DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.181e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2621 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	10813001	X_10813001_SNP [dm3] X_10918968_SNP [dm6]	T	G	4.398e^-7	0.324	INTRON CG43901
3R	14499497	3R_14499497_SNP [dm3] 3R_18673775_SNP [dm6]	C	T	4.646e^-7	0.324	SYNONYMOUS_CODING CG7702 DOWNSTREAM CG7705	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11682743	2L_11682743_SNP [dm3] 2L_11682743_SNP [dm6]	A	G	5.179e^-7	0.324	INTERGENIC
3R	14499477	3R_14499477_SNP [dm3] 3R_18673755_SNP [dm6]	A	C	9.017e^-7	0.351	SYNONYMOUS_CODING CG7702 DOWNSTREAM CG7705	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17731428	3L_17731428_SNP [dm3] 3L_17738328_SNP [dm6]	G	T	1.042e^-6	0.351	INTRON Ccn
2L	6237493	2L_6237493_SNP [dm3] 2L_6237493_SNP [dm6]	T	A	1.124e^-6	0.351	INTERGENIC
2R	8194333	2R_8194333_SNP [dm3] 2R_12306828_SNP [dm6]	T	G	1.537e^-6	0.412	UPSTREAM SIP2 INTRON CG17739
3L	11798316	3L_11798316_SNP [dm3] 3L_11805216_SNP [dm6]	G	T	1.790e^-6	0.42	SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_chinmo
2L	10518662	2L_10518662_SNP [dm3] 2L_10518662_SNP [dm6]	G	A	2.019e^-6	0.421	SYNONYMOUS_CODING Lrr47
2L	465672	2L_465672_SNP [dm3] 2L_465672_SNP [dm6]	T	C	3.182e^-6	0.534	INTRON CG4297
2L	1620932	2L_1620932_SNP [dm3] 2L_1620932_SNP [dm6]	A	G	3.982e^-6	0.534	EXON CR44603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15151739	3L_15151739_SNP [dm3] 3L_15158639_SNP [dm6]	G	A	4.026e^-6	0.534	UPSTREAM Prp31 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
X	9208650	X_9208650_SNP [dm3] X_9314617_SNP [dm6]	G	C	4.831e^-6	0.534	UPSTREAM CR44534 INTERGENIC
3R	12568673	3R_12568673_INS [dm3] 3R_16742951_INS [dm6]	A	ATTAATA	4.923e^-6	0.534	DOWNSTREAM bxd INTRON bxd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	18543292	2R_18543292_SNP [dm3] 2R_22655787_SNP [dm6]	G	A	4.970e^-6	0.534	UPSTREAM CG30196 DOWNSTREAM CG43325 INTRON CG43325 & 1 other EXON CR45268	TF binding site mE1_TFBS_cad
3L	1381787	3L_1381787_SNP [dm3] 3L_1381787_SNP [dm6]	C	G	5.063e^-6	0.534	INTRON Ptp61F & 1 other
2R	18340603	2R_18340603_SNP [dm3] 2R_22453098_SNP [dm6]	A	G	5.074e^-6	0.534	INTERGENIC
3L	19209751	3L_19209751_SNP [dm3] 3L_19216651_SNP [dm6]	C	A	5.128e^-6	0.534	INTRON fz2
3L	20268644	3L_20268644_SNP [dm3] 3L_20275544_SNP [dm6]	C	T	5.621e^-6	0.539	UPSTREAM CG17122 INTRON gogo	TF binding site mE1_TFBS_HSA
X	8522208	X_8522208_INS [dm3] X_8628175_INS [dm6]	T	TCGGCCCAATCT...	6.214e^-6	0.539	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	20206877	3R_20206877_SNP [dm3] 3R_24381155_SNP [dm6]	A	G	6.349e^-6	0.539	INTERGENIC
2L	9558138	2L_9558138_SNP [dm3] 2L_9558138_SNP [dm6]	A	G	6.488e^-6	0.539	INTRON jp
2R	6609552	2R_6609552_SNP [dm3] 2R_10722047_SNP [dm6]	T	C	6.613e^-6	0.539	UTR_3_PRIME Rab3 DOWNSTREAM stan
3L	1726213	3L_1726213_SNP [dm3] 3L_1726213_SNP [dm6]	A	G	9.474e^-6	0.586	DOWNSTREAM CG12035 INTRON drpr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	9208655	X_9208655_DEL [dm3] X_9314622_DEL [dm6]	TT	T	9.584e^-6	0.586	UPSTREAM CR44534 INTERGENIC
2R	10570073	2R_10570073_SNP [dm3] 2R_14682568_SNP [dm6]	A	T	9.774e^-6	0.586	INTRON mspo
2L	14238552	2L_14238552_SNP [dm3] 2L_14238552_SNP [dm6]	T	C	1.019e^-5	0.586	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12804469	2L_12804469_SNP [dm3] 2L_12804469_SNP [dm6]	G	T	1.122e^-5	0.586	INTERGENIC
2L	14346731	2L_14346731_SNP [dm3] 2L_14346731_SNP [dm6]	T	A	1.139e^-5	0.586	UPSTREAM Send2 DOWNSTREAM CG33090 & 1 other INTERGENIC
3R	26365292	3R_26365292_SNP [dm3] 3R_30539570_SNP [dm6]	T	G	1.151e^-5	0.586	INTRON tmod
X	19357703	X_19357703_SNP [dm3] X_19463670_SNP [dm6]	A	T	1.241e^-5	0.586	INTRON kek5
3L	7555315	3L_7555315_SNP [dm3] 3L_7562215_SNP [dm6]	A	C	1.253e^-5	0.586	UPSTREAM frac INTERGENIC
3L	1726179	3L_1726179_SNP [dm3] 3L_1726179_SNP [dm6]	C	T	1.285e^-5	0.586	DOWNSTREAM CG12035 INTRON drpr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	3289180	3R_3289180_SNP [dm3] 3R_7463458_SNP [dm6]	T	C	1.317e^-5	0.586	INTERGENIC
X	9208680	X_9208680_SNP [dm3] X_9314647_SNP [dm6]	C	T	1.330e^-5	0.586	UPSTREAM CR44534 INTERGENIC
2L	11682666	2L_11682666_DEL [dm3] 2L_11682666_DEL [dm6]	TCCTAGGAATAGTT...	T	1.389e^-5	0.586	INTERGENIC
3L	1726184	3L_1726184_SNP [dm3] 3L_1726184_SNP [dm6]	A	G	1.415e^-5	0.586	DOWNSTREAM CG12035 INTRON drpr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	14346737	2L_14346737_INS [dm3] 2L_14346737_INS [dm6]	A	AA	1.429e^-5	0.586	UPSTREAM Send2 DOWNSTREAM CG33090 & 1 other INTERGENIC
3L	1837200	3L_1837200_SNP [dm3] 3L_1837200_SNP [dm6]	T	A	1.459e^-5	0.586	INTERGENIC
2R	18514719	2R_18514719_SNP [dm3] 2R_22627214_SNP [dm6]	G	C	1.467e^-5	0.586	INTRON CG33143
X	4365113	X_4365113_SNP [dm3] X_4471080_SNP [dm6]	C	T	1.520e^-5	0.586	INTRON bi & 1 other
2R	8194334	2R_8194334_SNP [dm3] 2R_12306829_SNP [dm6]	G	T	1.565e^-5	0.586	UPSTREAM SIP2 INTRON CG17739
3L	8621564	3L_8621564_SNP [dm3] 3L_8628464_SNP [dm6]	C	T	1.645e^-5	0.586	INTRON Zasp66	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	5778958	2L_5778958_SNP [dm3] 2L_5778958_SNP [dm6]	T	A	1.647e^-5	0.586	INTRON CG9171
3R	1751784	3R_1751784_SNP [dm3] 3R_5926062_SNP [dm6]	C	T	1.729e^-5	0.586	INTRON CG34113
3L	7554672	3L_7554672_SNP [dm3] 3L_7561572_SNP [dm6]	G	C	1.736e^-5	0.586	INTERGENIC
3L	7556373	3L_7556373_SNP [dm3] 3L_7563273_SNP [dm6]	T	G	1.756e^-5	0.586	INTRON frac	TF binding site BDTNP1_TFBS_twi
3L	13075771	3L_13075771_SNP [dm3] 3L_13082671_SNP [dm6]	G	A	1.783e^-5	0.586	UPSTREAM CR43652 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8142664	X_8142664_SNP [dm3] X_8248631_SNP [dm6]	G	A	1.792e^-5	0.586	DOWNSTREAM ND75 & 1 other INTERGENIC
2R	19258142	2R_19258142_SNP [dm3] 2R_23370619_SNP [dm6]	C	T	1.838e^-5	0.586	SYNONYMOUS_CODING Ice1 DOWNSTREAM Golgin245	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18765289	2L_18765289_SNP [dm3] 2L_18765289_SNP [dm6]	C	T	1.855e^-5	0.586	SYNONYMOUS_CODING ham	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	1726223	3L_1726223_SNP [dm3] 3L_1726223_SNP [dm6]	T	C	1.880e^-5	0.586	DOWNSTREAM CG12035 INTRON drpr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	7373644	X_7373644_DEL [dm3] X_7479611_DEL [dm6]	TGGCT	C	1.886e^-5	0.586	INTERGENIC
X	3849812	X_3849812_SNP [dm3] X_3955779_SNP [dm6]	G	A	1.932e^-5	0.586	UTR_3_PRIME lva DOWNSTREAM Vap-33A	TF binding site mE1_TFBS_cad
X	3849824	X_3849824_SNP [dm3] X_3955791_SNP [dm6]	T	A	1.932e^-5	0.586	UTR_3_PRIME lva DOWNSTREAM Vap-33A	TF binding site mE1_TFBS_cad
3R	18015464	3R_18015464_SNP [dm3] 3R_22189742_SNP [dm6]	A	C	1.939e^-5	0.586	INTRON SKIP
X	4366458	X_4366458_SNP [dm3] X_4472425_SNP [dm6]	C	T	1.987e^-5	0.586	INTRON bi & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	21038862	2L_21038862_SNP [dm3] 2L_21038862_SNP [dm6]	T	G	1.990e^-5	0.586	INTRON CG42238	TF binding site mE1_TFBS_cad
2R	19107548	2R_19107548_SNP [dm3] 2R_23220025_SNP [dm6]	G	C	2.044e^-5	0.586	INTERGENIC
X	8204825	X_8204825_SNP [dm3] X_8310792_SNP [dm6]	C	A	2.090e^-5	0.586	INTRON nAChRalpha3
3L	7556374	3L_7556374_SNP [dm3] 3L_7563274_SNP [dm6]	G	C	2.094e^-5	0.586	INTRON frac	TF binding site BDTNP1_TFBS_twi
3R	13869894	3R_13869894_INS [dm3] 3R_18044172_INS [dm6]	G	GAG	2.109e^-5	0.586	INTERGENIC
X	9208616	X_9208616_SNP [dm3] X_9314583_SNP [dm6]	T	A	2.122e^-5	0.586	UPSTREAM CR44534 INTERGENIC
3R	13095714	3R_13095714_SNP [dm3] 3R_17269992_SNP [dm6]	C	T	2.140e^-5	0.586	DOWNSTREAM CR44258 INTERGENIC
2L	15417357	2L_15417357_SNP [dm3] 2L_15417357_SNP [dm6]	A	G	2.170e^-5	0.586	DOWNSTREAM CG44869 INTERGENIC
3L	7554764	3L_7554764_SNP [dm3] 3L_7561664_SNP [dm6]	C	T	2.181e^-5	0.586	UPSTREAM frac INTERGENIC
2L	916144	2L_916144_SNP [dm3] 2L_916144_SNP [dm6]	C	T	2.209e^-5	0.586	SYNONYMOUS_CODING GluRIIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	8194330	2R_8194330_SNP [dm3] 2R_12306825_SNP [dm6]	C	T	2.275e^-5	0.586	UPSTREAM SIP2 INTRON CG17739
3L	2684898	3L_2684898_SNP [dm3] 3L_2684898_SNP [dm6]	A	C	2.296e^-5	0.586	INTRON Fife
X	8618271	X_8618271_SNP [dm3] X_8724238_SNP [dm6]	T	A	2.297e^-5	0.586	UPSTREAM CR43297 INTERGENIC
3L	12454046	3L_12454046_SNP [dm3] 3L_12460946_SNP [dm6]	A	T	2.361e^-5	0.586	INTERGENIC	TF binding site mE1_TFBS_inv
2R	7426851	2R_7426851_SNP [dm3] 2R_11539346_SNP [dm6]	C	A	2.363e^-5	0.586	INTERGENIC
3L	5881190	3L_5881190_SNP [dm3] 3L_5888090_SNP [dm6]	T	A	2.371e^-5	0.586	INTERGENIC
2L	6237484	2L_6237484_SNP [dm3] 2L_6237484_SNP [dm6]	A	C	2.459e^-5	0.586	INTERGENIC
2L	800973	2L_800973_DEL [dm3] 2L_800973_DEL [dm6]	TT	G	2.528e^-5	0.586	DOWNSTREAM CR45259 INTERGENIC
3L	11153837	3L_11153837_SNP [dm3] 3L_11160737_SNP [dm6]	A	T	2.558e^-5	0.586	INTRON CG32082
X	7376826	X_7376826_SNP [dm3] X_7482793_SNP [dm6]	T	G	2.565e^-5	0.586	INTERGENIC
2L	10498726	2L_10498726_SNP [dm3] 2L_10498726_SNP [dm6]	T	A	2.624e^-5	0.586	INTRON Myo31DF
3L	6939938	3L_6939938_SNP [dm3] 3L_6946838_SNP [dm6]	C	A	2.642e^-5	0.586	INTRON tow
2L	456513	2L_456513_SNP [dm3] 2L_456513_SNP [dm6]	T	A	2.649e^-5	0.586	INTRON CG4133	TF binding site mE1_TFBS_cad
2L	458606	2L_458606_SNP [dm3] 2L_458606_SNP [dm6]	G	A	2.649e^-5	0.586	UTR_3_PRIME CG4133 DOWNSTREAM CG4297	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12579652	2L_12579652_SNP [dm3] 2L_12579652_SNP [dm6]	T	C	2.689e^-5	0.586	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	7420891	3L_7420891_SNP [dm3] 3L_7427791_SNP [dm6]	G	A	2.749e^-5	0.586	INTRON CG42458
3R	1793949	3R_1793949_SNP [dm3] 3R_5968227_SNP [dm6]	T	G	2.783e^-5	0.586	INTERGENIC
3R	1793951	3R_1793951_SNP [dm3] 3R_5968229_SNP [dm6]	T	G	2.783e^-5	0.586	INTERGENIC
3R	1793952	3R_1793952_SNP [dm3] 3R_5968230_SNP [dm6]	C	T	2.783e^-5	0.586	INTERGENIC
2L	452915	2L_452915_SNP [dm3] 2L_452915_SNP [dm6]	G	A	2.785e^-5	0.586	UTR_5_PRIME crq UPSTREAM CG4164 & 1 other INTRON crq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14858715	3L_14858715_SNP [dm3] 3L_14865615_SNP [dm6]	T	C	2.816e^-5	0.586	INTRON CG17839
2R	19779401	2R_19779401_SNP [dm3] 2R_23891878_SNP [dm6]	T	C	2.872e^-5	0.586	SYNONYMOUS_CODING DNA-ligI
2L	20203997	2L_20203997_SNP [dm3] 2L_20203997_SNP [dm6]	G	T	2.929e^-5	0.586	INTERGENIC	transposable element FlyBase
3R	8082599	3R_8082599_SNP [dm3] 3R_12256877_SNP [dm6]	C	T	2.933e^-5	0.586	DOWNSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	15120052	X_15120052_INS [dm3] X_15226019_INS [dm6]	A	AGGAGCA	3.019e^-5	0.586	EXON CR44430
3L	19209722	3L_19209722_SNP [dm3] 3L_19216622_SNP [dm6]	A	G	3.038e^-5	0.586	INTRON fz2
2L	15380614	2L_15380614_SNP [dm3] 2L_15380614_SNP [dm6]	T	A	3.121e^-5	0.586	INTERGENIC
3R	17874087	3R_17874087_SNP [dm3] 3R_22048365_SNP [dm6]	C	A	3.133e^-5	0.586	INTRON how	TF binding site BDTNP1_TFBS_twi
2L	21037530	2L_21037530_SNP [dm3] 2L_21037530_SNP [dm6]	T	A	3.155e^-5	0.586	INTRON CG42238	TF binding site BDTNP1_TFBS_hb
3L	19209665	3L_19209665_SNP [dm3] 3L_19216565_SNP [dm6]	T	A	3.167e^-5	0.586	INTRON fz2
X	7373067	X_7373067_DEL [dm3] X_7479034_DEL [dm6]	GC	G	3.195e^-5	0.586	INTERGENIC
2L	8542815	2L_8542815_SNP [dm3] 2L_8542815_SNP [dm6]	G	A	3.204e^-5	0.586	UPSTREAM Sema-1a DOWNSTREAM tRNA:CR31603 INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10060251	2L_10060251_SNP [dm3] 2L_10060251_SNP [dm6]	G	A	3.281e^-5	0.586	UPSTREAM Spn31A DOWNSTREAM Pen INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	13095703	3R_13095703_INS [dm3] 3R_17269981_INS [dm6]	T	TTATTT	3.308e^-5	0.586	DOWNSTREAM CR44258 INTERGENIC
2R	12278317	2R_12278317_SNP [dm3] 2R_16390812_SNP [dm6]	T	C	3.340e^-5	0.586	INTRON Sema-2b
X	18432425	X_18432425_SNP [dm3] X_18538392_SNP [dm6]	A	T	3.495e^-5	0.586	INTRON Bx	TF binding site BDTNP1_TFBS_dl
X	7376784	X_7376784_SNP [dm3] X_7482751_SNP [dm6]	C	A	3.496e^-5	0.586	INTERGENIC
2L	469006	2L_469006_SNP [dm3] 2L_469006_SNP [dm6]	G	C	3.500e^-5	0.586	INTRON CG4297
2L	1620911	2L_1620911_SNP [dm3] 2L_1620911_SNP [dm6]	G	A	3.534e^-5	0.586	EXON CR44603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14858641	3L_14858641_SNP [dm3] 3L_14865541_SNP [dm6]	C	G	3.605e^-5	0.586	INTRON CG17839
X	15964909	X_15964909_SNP [dm3] X_16070876_SNP [dm6]	G	C	3.620e^-5	0.586	DOWNSTREAM dpr18 INTRON Nipsnap
X	3849802	X_3849802_SNP [dm3] X_3955769_SNP [dm6]	G	A	3.655e^-5	0.586	UTR_3_PRIME lva DOWNSTREAM Vap-33A	TF binding site mE1_TFBS_cad
3L	15906925	3L_15906925_SNP [dm3] 3L_15913825_SNP [dm6]	C	A	3.665e^-5	0.586	INTRON sff
2L	492811	2L_492811_SNP [dm3] 2L_492811_SNP [dm6]	A	G	3.683e^-5	0.586	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
X	7372911	X_7372911_SNP [dm3] X_7478878_SNP [dm6]	T	C	3.707e^-5	0.586	INTERGENIC
2L	2549871	2L_2549871_SNP [dm3] 2L_2549871_SNP [dm6]	A	T	3.772e^-5	0.586	INTERGENIC
3L	7559546	3L_7559546_SNP [dm3] 3L_7566446_SNP [dm6]	C	A	3.782e^-5	0.586	STOP_GAINED frac INTRON frac	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7559547	3L_7559547_SNP [dm3] 3L_7566447_SNP [dm6]	A	C	3.782e^-5	0.586	SYNONYMOUS_CODING frac INTRON frac	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	472690	2L_472690_SNP [dm3] 2L_472690_SNP [dm6]	A	G	3.802e^-5	0.586	UPSTREAM MED15 & 1 other INTRON CG4297	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25638327	3R_25638327_SNP [dm3] 3R_29812605_SNP [dm6]	T	C	3.811e^-5	0.586	SYNONYMOUS_CODING ca	TF binding site mE1_TFBS_chinmo
3L	5611866	3L_5611866_SNP [dm3] 3L_5618766_SNP [dm6]	T	A	3.845e^-5	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17171394	2R_17171394_SNP [dm3] 2R_21283889_SNP [dm6]	T	C	3.907e^-5	0.586	SYNONYMOUS_CODING MFS16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	5136156	3L_5136156_SNP [dm3] 3L_5143056_SNP [dm6]	C	A	3.940e^-5	0.586	INTRON CG4623
2L	477871	2L_477871_SNP [dm3] 2L_477871_SNP [dm6]	T	C	3.953e^-5	0.586	NON_SYNONYMOUS_CODING cbt INTRON ush	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7373251	X_7373251_DEL [dm3] X_7479218_DEL [dm6]	AA	A	4.014e^-5	0.586	INTERGENIC
2R	19036493	2R_19036493_SNP [dm3] 2R_23148970_SNP [dm6]	C	T	4.077e^-5	0.586	INTERGENIC
3R	1587511	3R_1587511_MNP [dm3] 3R_5761789_MNP [dm6]	GTG	AAA	4.116e^-5	0.586	INTRON CG2082
3R	1587515	3R_1587515_SNP [dm3] 3R_5761793_SNP [dm6]	G	A	4.116e^-5	0.586	INTRON CG2082
3R	1587516	3R_1587516_SNP [dm3] 3R_5761794_SNP [dm6]	C	T	4.116e^-5	0.586	INTRON CG2082
3R	10510392	3R_10510392_SNP [dm3] 3R_14684670_SNP [dm6]	T	G	4.210e^-5	0.586	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
3R	17874077	3R_17874077_SNP [dm3] 3R_22048355_SNP [dm6]	T	C	4.272e^-5	0.586	INTRON how	TF binding site BDTNP1_TFBS_twi
2L	11667236	2L_11667236_SNP [dm3] 2L_11667236_SNP [dm6]	C	G	4.281e^-5	0.586	INTERGENIC
2R	13329147	2R_13329147_SNP [dm3] 2R_17441642_SNP [dm6]	C	T	4.291e^-5	0.586	INTRON EDTP & 1 other
2L	3738720	2L_3738720_SNP [dm3] 2L_3738720_SNP [dm6]	C	T	4.303e^-5	0.586	INTRON CG10019
2L	12799708	2L_12799708_SNP [dm3] 2L_12799708_SNP [dm6]	G	A	4.324e^-5	0.586	INTERGENIC
3L	7557244	3L_7557244_SNP [dm3] 3L_7564144_SNP [dm6]	T	G	4.334e^-5	0.586	INTRON frac	TF binding site BDTNP1_TFBS_twi
3L	1727586	3L_1727586_SNP [dm3] 3L_1727586_SNP [dm6]	G	A	4.409e^-5	0.586	INTRON drpr	TF binding site BDTNP1_TFBS_twi
3R	1587520	3R_1587520_SNP [dm3] 3R_5761798_SNP [dm6]	T	A	4.415e^-5	0.586	INTRON CG2082
X	7373254	X_7373254_SNP [dm3] X_7479221_SNP [dm6]	C	A	4.417e^-5	0.586	INTERGENIC
2L	13136215	2L_13136215_SNP [dm3] 2L_13136215_SNP [dm6]	G	A	4.457e^-5	0.586	INTERGENIC
3R	10061754	3R_10061754_SNP [dm3] 3R_14236032_SNP [dm6]	C	T	4.522e^-5	0.586	DOWNSTREAM CG43291 INTERGENIC
2R	18857891	2R_18857891_SNP [dm3] 2R_22970368_SNP [dm6]	C	A	4.540e^-5	0.586	INTERGENIC
2R	19793107	2R_19793107_SNP [dm3] 2R_23905584_SNP [dm6]	A	G	4.541e^-5	0.586	DOWNSTREAM CG13562 INTRON Nap1	TF binding site mE1_TFBS_sens
3L	19209662	3L_19209662_SNP [dm3] 3L_19216562_SNP [dm6]	C	A	4.591e^-5	0.586	INTRON fz2
2L	21039356	2L_21039356_SNP [dm3] 2L_21039356_SNP [dm6]	A	G	4.637e^-5	0.586	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14347118	2L_14347118_SNP [dm3] 2L_14347118_SNP [dm6]	G	A	4.643e^-5	0.586	UPSTREAM Send2 DOWNSTREAM mTTF INTERGENIC
X	15497029	X_15497029_SNP [dm3] X_15602996_SNP [dm6]	A	T	4.697e^-5	0.586	DOWNSTREAM sog INTERGENIC
2L	9192118	2L_9192118_SNP [dm3] 2L_9192118_SNP [dm6]	A	G	4.716e^-5	0.586	INTRON tai
3L	14078128	3L_14078128_SNP [dm3] 3L_14085028_SNP [dm6]	C	A	4.749e^-5	0.586	SYNONYMOUS_CODING CG8100
2L	8139346	2L_8139346_SNP [dm3] 2L_8139346_SNP [dm6]	A	T	4.762e^-5	0.586	SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
3R	13672186	3R_13672186_SNP [dm3] 3R_17846464_SNP [dm6]	C	T	4.791e^-5	0.586	INTRON tinc
3L	12454073	3L_12454073_SNP [dm3] 3L_12460973_SNP [dm6]	T	C	4.800e^-5	0.586	INTERGENIC	TF binding site mE1_TFBS_inv
3L	15906931	3L_15906931_DEL [dm3] 3L_15913831_DEL [dm6]	GTAG	G	4.823e^-5	0.586	INTRON sff
3L	10385453	3L_10385453_SNP [dm3] 3L_10392353_SNP [dm6]	C	T	4.853e^-5	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	477754	2L_477754_SNP [dm3] 2L_477754_SNP [dm6]	G	A	4.895e^-5	0.586	NON_SYNONYMOUS_CODING cbt INTRON ush	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13132340	2R_13132340_SNP [dm3] 2R_17244835_SNP [dm6]	G	A	4.913e^-5	0.586	DOWNSTREAM CG18469 INTRON mbl	TF binding site mE1_TFBS_inv
3R	23077193	3R_23077193_SNP [dm3] 3R_27251471_SNP [dm6]	A	G	4.982e^-5	0.586	SYNONYMOUS_CODING pll UPSTREAM CG5987 INTRON TfIIA-L	TF binding site mE1_TFBS_chinmo
X	8437780	X_8437780_SNP [dm3] X_8543747_SNP [dm6]	C	A	4.988e^-5	0.586	INTRON Nrg
3R	9750677	3R_9750677_SNP [dm3] 3R_13924955_SNP [dm6]	T	C	5.018e^-5	0.586	INTERGENIC
2R	16312409	2R_16312409_SNP [dm3] 2R_20424904_SNP [dm6]	G	A	5.071e^-5	0.586	INTRON CG12484
2R	7423666	2R_7423666_SNP [dm3] 2R_11536161_SNP [dm6]	C	T	5.089e^-5	0.586	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14385713	2L_14385713_SNP [dm3] 2L_14385713_SNP [dm6]	C	T	5.090e^-5	0.586	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14858587	3L_14858587_SNP [dm3] 3L_14865487_SNP [dm6]	G	A	5.106e^-5	0.586	INTRON CG17839
X	7373190	X_7373190_DEL [dm3] X_7479157_DEL [dm6]	AA	A	5.132e^-5	0.586	INTERGENIC
2L	21039026	2L_21039026_SNP [dm3] 2L_21039026_SNP [dm6]	C	T	5.180e^-5	0.586	INTRON CG42238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13043792	3R_13043792_SNP [dm3] 3R_17218070_SNP [dm6]	T	C	5.181e^-5	0.586	INTRON CG31262
3L	7420894	3L_7420894_SNP [dm3] 3L_7427794_SNP [dm6]	G	A	5.181e^-5	0.586	INTRON CG42458
2L	12579659	2L_12579659_SNP [dm3] 2L_12579659_SNP [dm6]	A	G	5.183e^-5	0.586	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	459193	2L_459193_SNP [dm3] 2L_459193_SNP [dm6]	G	C	5.201e^-5	0.586	UTR_3_PRIME CG4297 DOWNSTREAM CG4133
3L	1837217	3L_1837217_SNP [dm3] 3L_1837217_SNP [dm6]	A	G	5.230e^-5	0.586	INTERGENIC
2L	485954	2L_485954_SNP [dm3] 2L_485954_SNP [dm6]	C	T	5.290e^-5	0.586	INTRON ush	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	16987373	2R_16987373_SNP [dm3] 2R_21099868_SNP [dm6]	T	A	5.391e^-5	0.586	INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	7420892	3L_7420892_SNP [dm3] 3L_7427792_SNP [dm6]	T	C	5.396e^-5	0.586	INTRON CG42458
3R	8215112	3R_8215112_SNP [dm3] 3R_12389390_SNP [dm6]	G	A	5.412e^-5	0.586	DOWNSTREAM CG33098 INTRON CG34402
3R	3230040	3R_3230040_SNP [dm3] 3R_7404318_SNP [dm6]	T	G	5.416e^-5	0.586	INTERGENIC
2R	16316078	2R_16316078_SNP [dm3] 2R_20428573_SNP [dm6]	C	G	5.531e^-5	0.586	INTRON CG12484
2L	5778995	2L_5778995_SNP [dm3] 2L_5778995_SNP [dm6]	C	T	5.679e^-5	0.586	INTRON CG9171
2R	18516598	2R_18516598_SNP [dm3] 2R_22629093_SNP [dm6]	C	T	5.682e^-5	0.586	INTRON CG33143
3R	10510394	3R_10510394_SNP [dm3] 3R_14684672_SNP [dm6]	G	C	5.697e^-5	0.586	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
3L	1725509	3L_1725509_SNP [dm3] 3L_1725509_SNP [dm6]	C	T	5.781e^-5	0.586	UTR_3_PRIME CG12035 INTRON drpr	TF binding site BDTNP1_TFBS_twi
2L	6237517	2L_6237517_SNP [dm3] 2L_6237517_SNP [dm6]	G	A	5.822e^-5	0.586	INTERGENIC
2R	12233587	2R_12233587_SNP [dm3] 2R_16346082_SNP [dm6]	T	C	5.840e^-5	0.586	SYNONYMOUS_CODING wcd DOWNSTREAM Nup62	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9847525	2L_9847525_SNP [dm3] 2L_9847525_SNP [dm6]	A	C	5.878e^-5	0.586	UPSTREAM CR43766 INTRON nAChRalpha6
2L	1622515	2L_1622515_SNP [dm3] 2L_1622515_SNP [dm6]	G	A	6.007e^-5	0.586	EXON CR44603
2L	458839	2L_458839_SNP [dm3] 2L_458839_SNP [dm6]	A	G	6.012e^-5	0.586	DOWNSTREAM CG4297 & 1 other INTERGENIC
2L	10672183	2L_10672183_SNP [dm3] 2L_10672183_SNP [dm6]	A	G	6.050e^-5	0.586	DOWNSTREAM CG31871 INTERGENIC
3R	8082579	3R_8082579_SNP [dm3] 3R_12256857_SNP [dm6]	C	T	6.065e^-5	0.586	DOWNSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	9847523	2L_9847523_SNP [dm3] 2L_9847523_SNP [dm6]	T	G	6.068e^-5	0.586	UPSTREAM CR43766 INTRON nAChRalpha6
3L	1837237	3L_1837237_SNP [dm3] 3L_1837237_SNP [dm6]	C	T	6.098e^-5	0.586	INTERGENIC
2R	10219418	2R_10219418_SNP [dm3] 2R_14331913_SNP [dm6]	C	T	6.124e^-5	0.586	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	18939174	2L_18939174_SNP [dm3] 2L_18939174_SNP [dm6]	A	T	6.126e^-5	0.586	SPLICE_SITE_REGION ssp3 INTRON ssp3	TF binding site mE1_TFBS_cad
3R	3277193	3R_3277193_SNP [dm3] 3R_7451471_SNP [dm6]	C	T	6.171e^-5	0.586	UPSTREAM mir-4950 & 1 other DOWNSTREAM tRNA:V3b:84Db EXON mir-4950
2L	483064	2L_483064_SNP [dm3] 2L_483064_SNP [dm6]	G	A	6.204e^-5	0.586	INTRON ush	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10570098	2R_10570098_SNP [dm3] 2R_14682593_SNP [dm6]	A	G	6.249e^-5	0.586	INTRON mspo
X	19210240	X_19210240_SNP [dm3] X_19316207_SNP [dm6]	G	A	6.258e^-5	0.586	INTRON out
X	3530648	X_3530648_SNP [dm3] X_3636615_SNP [dm6]	G	A	6.269e^-5	0.586	INTRON AstA-R1
2L	10347773	2L_10347773_SNP [dm3] 2L_10347773_SNP [dm6]	G	T	6.283e^-5	0.586	DOWNSTREAM CG34367 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4792336	3L_4792336_SNP [dm3] 3L_4792336_SNP [dm6]	T	C	6.296e^-5	0.586	SYNONYMOUS_CODING RhoGEF64C	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14238531	2L_14238531_SNP [dm3] 2L_14238531_SNP [dm6]	A	G	6.347e^-5	0.586	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14346725	2L_14346725_SNP [dm3] 2L_14346725_SNP [dm6]	A	C	6.393e^-5	0.586	UPSTREAM Send2 DOWNSTREAM CG33090 & 1 other INTERGENIC
3L	889320	3L_889320_SNP [dm3] 3L_889320_SNP [dm6]	G	A	6.409e^-5	0.586	NON_SYNONYMOUS_CODING CG32479 UPSTREAM snoRNA:CG32479-b	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14118302	2R_14118302_SNP [dm3] 2R_18230797_SNP [dm6]	T	C	6.423e^-5	0.586	EXON CR45311	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Kr mE1_TFBS_Trl
3L	14857915	3L_14857915_SNP [dm3] 3L_14864815_SNP [dm6]	T	G	6.426e^-5	0.586	INTRON CG17839
3R	10333474	3R_10333474_SNP [dm3] 3R_14507752_SNP [dm6]	T	C	6.446e^-5	0.586	INTRON CR44177
3L	5611930	3L_5611930_SNP [dm3] 3L_5618830_SNP [dm6]	G	A	6.476e^-5	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	1750425	3R_1750425_SNP [dm3] 3R_5924703_SNP [dm6]	C	A	6.493e^-5	0.586	INTRON CG34113
2L	9906467	2L_9906467_INS [dm3] 2L_9906467_INS [dm6]	A	AATTAATTA	6.507e^-5	0.586	INTRON CG13124	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	6670435	3R_6670435_SNP [dm3] 3R_10844713_SNP [dm6]	G	C	6.514e^-5	0.586	INTRON Cad86C
2R	9437286	2R_9437286_SNP [dm3] 2R_13549781_SNP [dm6]	G	A	6.525e^-5	0.586	SYNONYMOUS_CODING CG33156	TF binding site mE1_TFBS_inv
3R	23196435	3R_23196435_SNP [dm3] 3R_27370713_SNP [dm6]	T	C	6.548e^-5	0.586	SYNONYMOUS_CODING CG42534 UPSTREAM CR43476	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3917688	3L_3917688_SNP [dm3] 3L_3917688_SNP [dm6]	A	T	6.600e^-5	0.586	INTRON Eip63F-1
3L	342363	3L_342363_SNP [dm3] 3L_342363_SNP [dm6]	G	T	6.640e^-5	0.586	UPSTREAM mthl10 INTRON Ptpmeg & 1 other
3L	4791218	3L_4791218_SNP [dm3] 3L_4791218_SNP [dm6]	T	A	6.643e^-5	0.586	NON_SYNONYMOUS_CODING RhoGEF64C	TF binding site mE1_TFBS_chinmo
3L	342353	3L_342353_SNP [dm3] 3L_342353_SNP [dm6]	C	G	6.740e^-5	0.586	UPSTREAM mthl10 INTRON Ptpmeg & 1 other
X	5572426	X_5572426_SNP [dm3] X_5678393_SNP [dm6]	T	C	6.761e^-5	0.586	INTRON Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
2L	5538701	2L_5538701_SNP [dm3] 2L_5538701_SNP [dm6]	T	G	6.768e^-5	0.586	DOWNSTREAM Hel25E INTRON CG14015	TF binding site mE1_TFBS_chinmo
2L	6595130	2L_6595130_SNP [dm3] 2L_6595130_SNP [dm6]	A	C	6.779e^-5	0.586	INTRON CG11319	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1725668	3L_1725668_SNP [dm3] 3L_1725668_SNP [dm6]	C	T	6.824e^-5	0.586	DOWNSTREAM CG12035 INTRON drpr	TF binding site BDTNP1_TFBS_twi
3R	9750608	3R_9750608_DEL [dm3] 3R_13924886_DEL [dm6]	AATTGCCAAGTACCGAT...	A	6.868e^-5	0.586	INTERGENIC
3R	9750643	3R_9750643_SNP [dm3] 3R_13924921_SNP [dm6]	A	T	6.868e^-5	0.586	INTERGENIC
3R	9750655	3R_9750655_DEL [dm3] 3R_13924933_DEL [dm6]	AAAATG	A	6.868e^-5	0.586	INTERGENIC
3L	342354	3L_342354_SNP [dm3] 3L_342354_SNP [dm6]	C	G	6.878e^-5	0.586	UPSTREAM mthl10 INTRON Ptpmeg & 1 other
2L	11676447	2L_11676447_SNP [dm3] 2L_11676447_SNP [dm6]	A	G	6.979e^-5	0.586	INTERGENIC
2R	8494308	2R_8494308_SNP [dm3] 2R_12606803_SNP [dm6]	A	G	6.981e^-5	0.586	INTRON Amph
2L	6246172	2L_6246172_SNP [dm3] 2L_6246172_SNP [dm6]	G	C	6.984e^-5	0.586	INTERGENIC
3L	3339629	3L_3339629_SNP [dm3] 3L_3339629_SNP [dm6]	A	G	7.035e^-5	0.586	INTRON kst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3R	1587522	3R_1587522_SNP [dm3] 3R_5761800_SNP [dm6]	A	T	7.058e^-5	0.586	INTRON CG2082
2L	11682628	2L_11682628_SNP [dm3] 2L_11682628_SNP [dm6]	C	T	7.174e^-5	0.586	INTERGENIC
3L	12454090	3L_12454090_SNP [dm3] 3L_12460990_SNP [dm6]	T	G	7.206e^-5	0.586	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9675116	2L_9675116_SNP [dm3] 2L_9675116_SNP [dm6]	A	G	7.237e^-5	0.586	INTERGENIC
2R	8944216	2R_8944216_DEL [dm3] 2R_13056711_DEL [dm6]	CGTACACAAGC...	C	7.243e^-5	0.586	UTR_3_PRIME Drl-2
3L	11150089	3L_11150089_SNP [dm3] 3L_11156989_SNP [dm6]	A	G	7.265e^-5	0.586	INTRON CG32082	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10570125	2R_10570125_SNP [dm3] 2R_14682620_SNP [dm6]	A	T	7.279e^-5	0.586	INTRON mspo
2R	7713239	2R_7713239_SNP [dm3] 2R_11825734_SNP [dm6]	C	T	7.308e^-5	0.586	INTRON CG13192	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	3153742	X_3153742_SNP [dm3] X_3259709_SNP [dm6]	T	A	7.351e^-5	0.586	INTRON dnc
3L	1728164	3L_1728164_SNP [dm3] 3L_1728164_SNP [dm6]	T	A	7.389e^-5	0.586	INTRON drpr	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	19590134	X_19590134_SNP [dm3] X_19696101_SNP [dm6]	G	A	7.395e^-5	0.586	UPSTREAM CG14229 & 1 other INTERGENIC	transposable element FlyBase
2L	12685678	2L_12685678_SNP [dm3] 2L_12685678_SNP [dm6]	T	C	7.428e^-5	0.586	SYNONYMOUS_CODING pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	11676309	2L_11676309_SNP [dm3] 2L_11676309_SNP [dm6]	T	A	7.434e^-5	0.586	INTERGENIC
2L	10465673	2L_10465673_SNP [dm3] 2L_10465673_SNP [dm6]	T	C	7.446e^-5	0.586	INTRON RluA-1
X	20465716	X_20465716_SNP [dm3] X_20594689_SNP [dm6]	G	T	7.462e^-5	0.586	INTRON RunxA
X	4525425	X_4525425_SNP [dm3] X_4631392_SNP [dm6]	A	G	7.466e^-5	0.586	UTR_3_PRIME CG12179 UPSTREAM CG12184
2L	12579736	2L_12579736_SNP [dm3] 2L_12579736_SNP [dm6]	C	A	7.500e^-5	0.586	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	7556363	3L_7556363_SNP [dm3] 3L_7563263_SNP [dm6]	G	A	7.561e^-5	0.587	INTRON frac	TF binding site BDTNP1_TFBS_twi
2L	14346944	2L_14346944_SNP [dm3] 2L_14346944_SNP [dm6]	C	G	7.610e^-5	0.587	UPSTREAM Send2 DOWNSTREAM mTTF INTERGENIC
2R	14119803	2R_14119803_SNP [dm3] 2R_18232298_SNP [dm6]	C	T	7.640e^-5	0.587	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	15481816	2R_15481816_SNP [dm3] 2R_19594311_SNP [dm6]	C	T	7.651e^-5	0.587	SYNONYMOUS_CODING CG16716 INTRON sm
X	8356642	X_8356642_SNP [dm3] X_8462609_SNP [dm6]	G	C	7.665e^-5	0.587	SYNONYMOUS_CODING Es2 DOWNSTREAM Sptr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	21039919	2L_21039919_SNP [dm3] 2L_21039919_SNP [dm6]	T	C	7.696e^-5	0.587	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	3530672	X_3530672_SNP [dm3] X_3636639_SNP [dm6]	G	T	7.749e^-5	0.588	INTRON AstA-R1
2L	7757532	2L_7757532_SNP [dm3] 2L_7757532_SNP [dm6]	A	T	7.797e^-5	0.588	DOWNSTREAM CG14538 INTRON CG7196
2L	17772914	2L_17772914_SNP [dm3] 2L_17772914_SNP [dm6]	C	T	7.827e^-5	0.588	INTRON CadN
3R	12191472	3R_12191472_SNP [dm3] 3R_16365750_SNP [dm6]	G	A	7.866e^-5	0.588	INTRON CG14880	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8356635	X_8356635_SNP [dm3] X_8462602_SNP [dm6]	A	C	7.869e^-5	0.588	NON_SYNONYMOUS_CODING Es2 DOWNSTREAM Sptr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4791004	3L_4791004_SNP [dm3] 3L_4791004_SNP [dm6]	A	G	7.960e^-5	0.59	SYNONYMOUS_CODING RhoGEF64C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9208841	X_9208841_SNP [dm3] X_9314808_SNP [dm6]	C	T	8.006e^-5	0.59	EXON CR44534
3R	11585163	3R_11585163_SNP [dm3] 3R_15759441_SNP [dm6]	C	T	8.051e^-5	0.59	INTERGENIC
3R	24202516	3R_24202516_SNP [dm3] 3R_28376794_SNP [dm6]	C	T	8.071e^-5	0.59	INTERGENIC
3L	13344708	3L_13344708_SNP [dm3] 3L_13351608_SNP [dm6]	T	G	8.097e^-5	0.59	SYNONYMOUS_CODING CG17687
3L	5848045	3L_5848045_SNP [dm3] 3L_5854945_SNP [dm6]	C	T	8.121e^-5	0.59	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20522674	2L_20522674_SNP [dm3] 2L_20522674_SNP [dm6]	G	A	8.122e^-5	0.59	INTERGENIC
2R	7423553	2R_7423553_SNP [dm3] 2R_11536048_SNP [dm6]	G	A	8.252e^-5	0.593	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11676316	2L_11676316_SNP [dm3] 2L_11676316_SNP [dm6]	C	A	8.294e^-5	0.593	INTERGENIC
2R	12233590	2R_12233590_SNP [dm3] 2R_16346085_SNP [dm6]	C	T	8.309e^-5	0.593	SYNONYMOUS_CODING wcd DOWNSTREAM Nup62	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10941436	3R_10941436_SNP [dm3] 3R_15115714_SNP [dm6]	C	T	8.338e^-5	0.593	INTRON CG42788
X	8357011	X_8357011_SNP [dm3] X_8462978_SNP [dm6]	G	T	8.339e^-5	0.593	SYNONYMOUS_CODING Es2 DOWNSTREAM Sptr	TF binding site mE1_TFBS_cad
2R	20297590	2R_20297590_SNP [dm3] 2R_24410067_SNP [dm6]	T	C	8.356e^-5	0.593	INTRON SerT	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	17547244	2L_17547244_SNP [dm3] 2L_17547244_SNP [dm6]	T	A	8.467e^-5	0.593	EXON CR45697
3R	9750644	3R_9750644_SNP [dm3] 3R_13924922_SNP [dm6]	A	C	8.513e^-5	0.593	INTERGENIC
X	7376850	X_7376850_SNP [dm3] X_7482817_SNP [dm6]	C	T	8.649e^-5	0.593	INTERGENIC
2L	11676419	2L_11676419_SNP [dm3] 2L_11676419_SNP [dm6]	G	A	8.651e^-5	0.593	INTERGENIC
2R	18515155	2R_18515155_SNP [dm3] 2R_22627650_SNP [dm6]	T	G	8.674e^-5	0.593	INTRON CG33143	TF binding site mE1_TFBS_chinmo
2L	2231571	2L_2231571_INS [dm3] 2L_2231571_INS [dm6]	A	AT	8.705e^-5	0.593	UTR_3_PRIME Sec24CD DOWNSTREAM Sec24CD & 1 other
X	3153711	X_3153711_SNP [dm3] X_3259678_SNP [dm6]	C	G	8.760e^-5	0.593	INTRON dnc
2R	14242984	2R_14242984_INS [dm3] 2R_18355479_INS [dm6]	A	AACCAAACGA	8.775e^-5	0.593	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	484008	2L_484008_SNP [dm3] 2L_484008_SNP [dm6]	C	A	8.834e^-5	0.593	INTRON ush	TF binding site mE1_TFBS_Trl
2R	18286289	2R_18286289_SNP [dm3] 2R_22398784_SNP [dm6]	G	A	8.840e^-5	0.593	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10795500	2R_10795500_DEL [dm3] 2R_14907995_DEL [dm6]	CC	C	8.843e^-5	0.593	UPSTREAM CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12586496	3L_12586496_DEL [dm3] 3L_12593396_DEL [dm6]	GG	G	8.887e^-5	0.593	INTRON ara	TF binding site mE1_TFBS_HSA
X	9208502	X_9208502_SNP [dm3] X_9314469_SNP [dm6]	G	A	8.904e^-5	0.593	UPSTREAM CR44534 INTERGENIC
2R	7671650	2R_7671650_SNP [dm3] 2R_11784145_SNP [dm6]	C	T	8.975e^-5	0.593	INTRON ths
3R	14499437	3R_14499437_SNP [dm3] 3R_18673715_SNP [dm6]	T	A	8.990e^-5	0.593	SYNONYMOUS_CODING CG7702 DOWNSTREAM CG7705	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	3276804	3R_3276804_DEL [dm3] 3R_7451082_DEL [dm6]	ATGGAAACTATTCA...	A	9.093e^-5	0.593	UPSTREAM tRNA:V3b:84Db & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA
2R	7040079	2R_7040079_INS [dm3] 2R_11152574_INS [dm6]	G	GCG	9.142e^-5	0.593	INTRON CG13229
2L	7860100	2L_7860100_DEL [dm3] 2L_7860100_DEL [dm6]	TTTTGT	T	9.178e^-5	0.593	UTR_3_PRIME lectin-28C INTRON TwdlE
2L	7860110	2L_7860110_INS [dm3] 2L_7860110_INS [dm6]	C	CC	9.178e^-5	0.593	UTR_3_PRIME lectin-28C INTRON TwdlE
3L	18033336	3L_18033336_SNP [dm3] 3L_18040236_SNP [dm6]	T	C	9.235e^-5	0.593	UPSTREAM CG32192 INTRON Eip75B
X	7373066	X_7373066_SNP [dm3] X_7479033_SNP [dm6]	A	G	9.264e^-5	0.593	INTERGENIC
3R	1750485	3R_1750485_SNP [dm3] 3R_5924763_SNP [dm6]	C	A	9.310e^-5	0.593	INTRON CG34113
2R	8949138	2R_8949138_SNP [dm3] 2R_13061633_SNP [dm6]	C	G	9.321e^-5	0.593	INTRON Drl-2
3L	250358	3L_250358_SNP [dm3] 3L_250358_SNP [dm6]	T	C	9.322e^-5	0.593	UTR_3_PRIME DIP2 DOWNSTREAM mthl14
3R	11528524	3R_11528524_SNP [dm3] 3R_15702802_SNP [dm6]	A	C	9.323e^-5	0.593	INTERGENIC
2R	13329182	2R_13329182_SNP [dm3] 2R_17441677_SNP [dm6]	A	C	9.411e^-5	0.593	SYNONYMOUS_CODING CG18467 INTRON EDTP
2R	18514826	2R_18514826_DEL [dm3] 2R_22627321_DEL [dm6]	TT	T	9.470e^-5	0.593	INTRON CG33143
2L	12799611	2L_12799611_SNP [dm3] 2L_12799611_SNP [dm6]	T	C	9.506e^-5	0.593	INTERGENIC
2L	20128863	2L_20128863_SNP [dm3] 2L_20128863_SNP [dm6]	A	G	9.572e^-5	0.593	INTERGENIC
3R	8083034	3R_8083034_SNP [dm3] 3R_12257312_SNP [dm6]	A	T	9.581e^-5	0.593	DOWNSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	9487660	X_9487660_SNP [dm3] X_9593627_SNP [dm6]	C	T	9.617e^-5	0.593	INTERGENIC
X	13734604	X_13734604_SNP [dm3] X_13840571_SNP [dm6]	A	T	9.646e^-5	0.593	UPSTREAM AMPdeam INTRON AMPdeam
2R	6881891	2R_6881891_SNP [dm3] 2R_10994386_SNP [dm6]	C	G	9.700e^-5	0.593	INTRON luna	TF binding site BDTNP1_TFBS_twi
3L	17723731	3L_17723731_SNP [dm3] 3L_17730631_SNP [dm6]	A	T	9.725e^-5	0.593	INTRON Ccn
2R	19777945	2R_19777945_SNP [dm3] 2R_23890422_SNP [dm6]	T	A	9.762e^-5	0.593	UPSTREAM DNA-ligI & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3L	8250841	3L_8250841_SNP [dm3] 3L_8257741_SNP [dm6]	C	G	9.801e^-5	0.593	INTRON Dscam4
2L	10184657	2L_10184657_SNP [dm3] 2L_10184657_SNP [dm6]	G	A	9.833e^-5	0.593	NON_SYNONYMOUS_CODING Sur	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	3849823	X_3849823_SNP [dm3] X_3955790_SNP [dm6]	G	A	9.845e^-5	0.593	UTR_3_PRIME lva DOWNSTREAM Vap-33A	TF binding site mE1_TFBS_cad
2L	17790394	2L_17790394_SNP [dm3] 2L_17790394_SNP [dm6]	T	A	9.887e^-5	0.593	INTRON CadN2
3L	7555006	3L_7555006_SNP [dm3] 3L_7561906_SNP [dm6]	C	T	9.927e^-5	0.593	UPSTREAM frac INTERGENIC
2L	9243747	2L_9243747_SNP [dm3] 2L_9243747_SNP [dm6]	G	A	9.945e^-5	0.593	NON_SYNONYMOUS_CODING tai	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4090012	3R_4090012_SNP [dm3] 3R_8264290_SNP [dm6]	G	A	9.947e^-5	0.593	UPSTREAM Mcm2 INTRON RpA-70	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
X	19626596	X_19626596_SNP [dm3] X_19732563_SNP [dm6]	A	T	9.954e^-5	0.593	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14396572	2R_14396572_SNP [dm3] 2R_18509067_SNP [dm6]	C	A	9.962e^-5	0.593	INTERGENIC
X	13278149	X_13278149_SNP [dm3] X_13384116_SNP [dm6]	G	A	9.971e^-5	0.593	INTRON Rbp1-like	TF binding site BDTNP1_TFBS_dl
2L	13908005	2L_13908005_SNP [dm3] 2L_13908005_SNP [dm6]	A	C	1.003e^-4	0.593	INTRON Ance	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	13332826	X_13332826_SNP [dm3] X_13438793_SNP [dm6]	C	A	1.036e^-4	0.593	INTERGENIC
2R	10570123	2R_10570123_SNP [dm3] 2R_14682618_SNP [dm6]	T	A	1.036e^-4	0.593	INTRON mspo
2L	14238573	2L_14238573_SNP [dm3] 2L_14238573_SNP [dm6]	T	C	1.041e^-4	0.593	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14262437	2L_14262437_SNP [dm3] 2L_14262437_SNP [dm6]	T	C	1.044e^-4	0.593	UPSTREAM wb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
X	19387378	X_19387378_SNP [dm3] X_19493345_SNP [dm6]	C	T	1.045e^-4	0.593	UTR_3_PRIME CG12204 DOWNSTREAM CG12203	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20146663	2L_20146663_SNP [dm3] 2L_20146663_SNP [dm6]	A	G	1.047e^-4	0.593	INTERGENIC
2L	7860070	2L_7860070_DEL [dm3] 2L_7860070_DEL [dm6]	CACTG	C	1.048e^-4	0.593	UTR_3_PRIME lectin-28C INTRON TwdlE	TF binding site BDTNP1_TFBS_twi
3L	7420953	3L_7420953_SNP [dm3] 3L_7427853_SNP [dm6]	A	G	1.049e^-4	0.593	INTRON CG42458
3R	1327072	3R_1327072_SNP [dm3] 3R_5501350_SNP [dm6]	C	T	1.050e^-4	0.593	INTRON CG31547
2R	17519294	2R_17519294_DEL [dm3] 2R_21631789_DEL [dm6]	AACT	A	1.051e^-4	0.593	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
3L	17723778	3L_17723778_DEL [dm3] 3L_17730678_DEL [dm6]	GAGGAAA	G	1.054e^-4	0.593	INTRON Ccn
3L	17723790	3L_17723790_SNP [dm3] 3L_17730690_SNP [dm6]	C	A	1.054e^-4	0.593	INTRON Ccn
X	10099487	X_10099487_SNP [dm3] X_10205454_SNP [dm6]	T	G	1.062e^-4	0.593	UTR_3_PRIME CG15309 DOWNSTREAM CR32690 INTRON CR44894
2L	20128969	2L_20128969_SNP [dm3] 2L_20128969_SNP [dm6]	A	C	1.065e^-4	0.593	INTERGENIC
2L	2235756	2L_2235756_SNP [dm3] 2L_2235756_SNP [dm6]	A	G	1.071e^-4	0.593	SYNONYMOUS_CODING Sec24CD UPSTREAM CR44115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	20128877	2L_20128877_SNP [dm3] 2L_20128877_SNP [dm6]	A	T	1.077e^-4	0.593	INTERGENIC
3R	745451	3R_745451_SNP [dm3] 3R_4919729_SNP [dm6]	C	A	1.088e^-4	0.593	INTRON Cdep
3R	11557084	3R_11557084_SNP [dm3] 3R_15731362_SNP [dm6]	G	A	1.095e^-4	0.593	UPSTREAM CG34274 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14262444	2L_14262444_SNP [dm3] 2L_14262444_SNP [dm6]	A	C	1.101e^-4	0.593	UPSTREAM wb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
X	2390262	X_2390262_SNP [dm3] X_2496229_SNP [dm6]	A	G	1.102e^-4	0.593	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5784895	2L_5784895_SNP [dm3] 2L_5784895_SNP [dm6]	C	G	1.102e^-4	0.593	DOWNSTREAM CG31913 INTRON CG9171
2R	10262362	2R_10262362_SNP [dm3] 2R_14374857_SNP [dm6]	G	A	1.105e^-4	0.593	SYNONYMOUS_CODING Obp50e UPSTREAM CG34185
X	2390352	X_2390352_SNP [dm3] X_2496319_SNP [dm6]	G	T	1.110e^-4	0.593	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20222314	2R_20222314_INS [dm3] 2R_24334791_INS [dm6]	T	TA	1.112e^-4	0.593	UPSTREAM slbo EXON CR44282	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	7429592	2R_7429592_SNP [dm3] 2R_11542087_SNP [dm6]	C	A	1.112e^-4	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5692007	3L_5692007_SNP [dm3] 3L_5698907_SNP [dm6]	G	T	1.113e^-4	0.593	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo
3L	7420959	3L_7420959_SNP [dm3] 3L_7427859_SNP [dm6]	C	G	1.115e^-4	0.593	INTRON CG42458
3R	11581903	3R_11581903_SNP [dm3] 3R_15756181_SNP [dm6]	T	C	1.116e^-4	0.593	INTERGENIC
2R	19107563	2R_19107563_SNP [dm3] 2R_23220040_SNP [dm6]	T	G	1.117e^-4	0.593	INTERGENIC
2R	17519305	2R_17519305_SNP [dm3] 2R_21631800_SNP [dm6]	G	A	1.119e^-4	0.593	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
2L	10348587	2L_10348587_SNP [dm3] 2L_10348587_SNP [dm6]	T	A	1.120e^-4	0.593	DOWNSTREAM CG5022 INTRON CG34367	TF binding site mE1_TFBS_cad
X	8356660	X_8356660_SNP [dm3] X_8462627_SNP [dm6]	T	C	1.121e^-4	0.593	SYNONYMOUS_CODING Es2 DOWNSTREAM Sptr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15840168	2R_15840168_SNP [dm3] 2R_19952663_SNP [dm6]	T	C	1.139e^-4	0.593	DOWNSTREAM CG10822 INTERGENIC
X	2163221	X_2163221_SNP [dm3] X_2269188_SNP [dm6]	C	G	1.139e^-4	0.593	UTR_5_PRIME CG2924 UPSTREAM CR45480	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13964137	3L_13964137_SNP [dm3] 3L_13971037_SNP [dm6]	G	A	1.141e^-4	0.593	SYNONYMOUS_CODING ssp2 UTR_3_PRIME Nxf3	TF binding site mE1_TFBS_cad
3R	13672132	3R_13672132_SNP [dm3] 3R_17846410_SNP [dm6]	A	T	1.148e^-4	0.593	INTRON tinc
2L	8576734	2L_8576734_SNP [dm3] 2L_8576734_SNP [dm6]	T	C	1.151e^-4	0.593	INTRON Sema-1a	TF binding site mE1_TFBS_HSA
3R	3328097	3R_3328097_SNP [dm3] 3R_7502375_SNP [dm6]	T	C	1.155e^-4	0.593	UTR_5_PRIME CG1287 INTRON alpha-Est9
3R	16617002	3R_16617002_SNP [dm3] 3R_20791280_SNP [dm6]	T	C	1.155e^-4	0.593	INTRON Syp	TF binding site BDTNP1_TFBS_twi
3R	2039482	3R_2039482_SNP [dm3] 3R_6213760_SNP [dm6]	G	T	1.161e^-4	0.593	DOWNSTREAM Osi2 INTERGENIC
2R	18424161	2R_18424161_SNP [dm3] 2R_22536656_SNP [dm6]	G	A	1.164e^-4	0.593	SYNONYMOUS_CODING px
2R	12233611	2R_12233611_SNP [dm3] 2R_16346106_SNP [dm6]	G	C	1.164e^-4	0.593	SYNONYMOUS_CODING wcd DOWNSTREAM Nup62	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	796130	3R_796130_DEL [dm3] 3R_4970408_DEL [dm6]	TT	T	1.170e^-4	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	7373802	X_7373802_SNP [dm3] X_7479769_SNP [dm6]	T	G	1.172e^-4	0.593	INTERGENIC
3R	17874146	3R_17874146_SNP [dm3] 3R_22048424_SNP [dm6]	T	G	1.173e^-4	0.593	INTRON how	TF binding site BDTNP1_TFBS_twi
2L	7149891	2L_7149891_SNP [dm3] 2L_7149891_SNP [dm6]	C	T	1.173e^-4	0.593	INTRON Pvf3
X	10332142	X_10332142_DEL [dm3] X_10438109_DEL [dm6]	AAG	A	1.177e^-4	0.593	INTRON CG32683
3R	16616982	3R_16616982_SNP [dm3] 3R_20791260_SNP [dm6]	T	A	1.183e^-4	0.593	INTRON Syp	TF binding site BDTNP1_TFBS_twi
3L	7635960	3L_7635960_SNP [dm3] 3L_7642860_SNP [dm6]	G	T	1.184e^-4	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	12189049	3R_12189049_SNP [dm3] 3R_16363327_SNP [dm6]	C	T	1.186e^-4	0.593	INTRON CG14880
2L	12797294	2L_12797294_SNP [dm3] 2L_12797294_SNP [dm6]	G	A	1.187e^-4	0.593	INTERGENIC
2L	13753467	2L_13753467_SNP [dm3] 2L_13753467_SNP [dm6]	C	A	1.187e^-4	0.593	INTRON CR44846 & 1 other EXON CR44846
3R	11581856	3R_11581856_SNP [dm3] 3R_15756134_SNP [dm6]	T	A	1.190e^-4	0.593	INTERGENIC
3L	740176	3L_740176_SNP [dm3] 3L_740176_SNP [dm6]	G	A	1.190e^-4	0.593	UPSTREAM hng3 INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1837239	3L_1837239_SNP [dm3] 3L_1837239_SNP [dm6]	T	A	1.193e^-4	0.593	INTERGENIC
2L	2257778	2L_2257778_SNP [dm3] 2L_2257778_SNP [dm6]	C	T	1.193e^-4	0.593	EXON CR44787	TF binding site BDTNP1_TFBS_twi
2L	20114033	2L_20114033_SNP [dm3] 2L_20114033_SNP [dm6]	G	T	1.197e^-4	0.593	INTERGENIC
2L	20106785	2L_20106785_SNP [dm3] 2L_20106785_SNP [dm6]	A	G	1.208e^-4	0.593	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	10429716	2L_10429716_SNP [dm3] 2L_10429716_SNP [dm6]	T	C	1.210e^-4	0.593	SPLICE_SITE_REGION CG5188 SYNONYMOUS_CODING CG5188 DOWNSTREAM CG5343	TF binding site mE1_TFBS_sens
3R	12330139	3R_12330139_SNP [dm3] 3R_16504417_SNP [dm6]	C	A	1.211e^-4	0.593	INTRON CG42342
3L	13667540	3L_13667540_SNP [dm3] 3L_13674440_SNP [dm6]	A	G	1.215e^-4	0.593	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	15115352	3L_15115352_SNP [dm3] 3L_15122252_SNP [dm6]	G	T	1.215e^-4	0.593	UTR_3_PRIME CG32847 INTRON Cep135 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	18016855	3R_18016855_SNP [dm3] 3R_22191133_SNP [dm6]	G	A	1.217e^-4	0.593	INTRON SKIP
X	19389219	X_19389219_SNP [dm3] X_19495186_SNP [dm6]	T	A	1.217e^-4	0.593	UPSTREAM CG12204 & 3 others DOWNSTREAM CR44340 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
2L	20053804	2L_20053804_SNP [dm3] 2L_20053804_SNP [dm6]	T	A	1.218e^-4	0.593	INTRON sNPF
3L	4790881	3L_4790881_SNP [dm3] 3L_4790881_SNP [dm6]	T	C	1.218e^-4	0.593	SYNONYMOUS_CODING RhoGEF64C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17172312	2R_17172312_SNP [dm3] 2R_21284807_SNP [dm6]	T	C	1.220e^-4	0.593	DOWNSTREAM CG10505 INTRON MFS16
3R	12056719	3R_12056719_SNP [dm3] 3R_16230997_SNP [dm6]	G	A	1.220e^-4	0.593	INTRON tara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2R	7884849	2R_7884849_SNP [dm3] 2R_11997344_SNP [dm6]	T	C	1.221e^-4	0.593	INTERGENIC
2L	8139551	2L_8139551_SNP [dm3] 2L_8139551_SNP [dm6]	A	T	1.222e^-4	0.593	NON_SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10570082	2R_10570082_SNP [dm3] 2R_14682577_SNP [dm6]	A	T	1.224e^-4	0.593	INTRON mspo
2L	2178809	2L_2178809_SNP [dm3] 2L_2178809_SNP [dm6]	C	G	1.225e^-4	0.593	UPSTREAM aop INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2231256	2L_2231256_SNP [dm3] 2L_2231256_SNP [dm6]	C	T	1.225e^-4	0.593	UTR_3_PRIME Sec24CD DOWNSTREAM rti & 1 other
2R	11748692	2R_11748692_INS [dm3] 2R_15861187_INS [dm6]	A	ACAATA	1.230e^-4	0.593	UTR_5_PRIME Gpo-1 INTRON Gpo-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6448796	2L_6448796_SNP [dm3] 2L_6448796_SNP [dm6]	G	A	1.233e^-4	0.593	UTR_3_PRIME retm UPSTREAM CG9527 DOWNSTREAM retm	TF binding site mE1_TFBS_kn
X	7376820	X_7376820_SNP [dm3] X_7482787_SNP [dm6]	A	C	1.233e^-4	0.593	INTERGENIC
3R	3277382	3R_3277382_SNP [dm3] 3R_7451660_SNP [dm6]	A	G	1.236e^-4	0.593	UPSTREAM tRNA:V3b:84Da DOWNSTREAM tRNA:V3b:84Db & 1 other INTERGENIC	transposable element FlyBase
3R	26036572	3R_26036572_SNP [dm3] 3R_30210850_SNP [dm6]	A	T	1.237e^-4	0.593	UPSTREAM CecA1 & 1 other DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
2L	12571151	2L_12571151_SNP [dm3] 2L_12571151_SNP [dm6]	G	T	1.242e^-4	0.593	DOWNSTREAM CR44597 EXON CR44598	TF binding site mE1_TFBS_sens
3R	11572403	3R_11572403_SNP [dm3] 3R_15746681_SNP [dm6]	T	C	1.242e^-4	0.593	DOWNSTREAM CG4520 INTERGENIC
X	7373640	X_7373640_SNP [dm3] X_7479607_SNP [dm6]	T	C	1.248e^-4	0.593	INTERGENIC
X	4364935	X_4364935_INS [dm3] X_4470902_INS [dm6]	T	TT	1.251e^-4	0.593	INTRON bi & 1 other
X	3153767	X_3153767_SNP [dm3] X_3259734_SNP [dm6]	G	A	1.251e^-4	0.593	INTRON dnc
3L	12533455	3L_12533455_SNP [dm3] 3L_12540355_SNP [dm6]	G	A	1.252e^-4	0.593	INTRON sowah
3L	12256151	3L_12256151_SNP [dm3] 3L_12263051_SNP [dm6]	T	C	1.257e^-4	0.593	INTRON app
3R	18016866	3R_18016866_SNP [dm3] 3R_22191144_SNP [dm6]	G	T	1.257e^-4	0.593	INTRON SKIP
3L	8876486	3L_8876486_SNP [dm3] 3L_8883386_SNP [dm6]	T	C	1.261e^-4	0.593	INTRON dally
3L	6349498	3L_6349498_SNP [dm3] 3L_6356398_SNP [dm6]	T	C	1.264e^-4	0.593	INTERGENIC
2R	18543853	2R_18543853_SNP [dm3] 2R_22656348_SNP [dm6]	T	A	1.274e^-4	0.593	UTR_5_PRIME CG43326 UTR_3_PRIME CG43325 UPSTREAM CG30196 & 1 other EXON CR45268	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10066549	2L_10066549_SNP [dm3] 2L_10066549_SNP [dm6]	G	T	1.281e^-4	0.593	INTRON CG44153
2R	5426177	2R_5426177_SNP [dm3] 2R_9538672_SNP [dm6]	G	A	1.284e^-4	0.593	UTR_3_PRIME brp
3L	342035	3L_342035_SNP [dm3] 3L_342035_SNP [dm6]	G	A	1.291e^-4	0.593	UPSTREAM mthl10 INTRON Ptpmeg & 1 other
2L	916147	2L_916147_SNP [dm3] 2L_916147_SNP [dm6]	C	T	1.295e^-4	0.593	SYNONYMOUS_CODING GluRIIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	466195	2L_466195_SNP [dm3] 2L_466195_SNP [dm6]	T	A	1.298e^-4	0.593	INTRON CG4297
2L	4474720	2L_4474720_SNP [dm3] 2L_4474720_SNP [dm6]	A	G	1.303e^-4	0.593	SYNONYMOUS_CODING ine	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20268641	3L_20268641_SNP [dm3] 3L_20275541_SNP [dm6]	G	A	1.314e^-4	0.593	UPSTREAM CG17122 INTRON gogo	TF binding site mE1_TFBS_HSA
2L	8573954	2L_8573954_SNP [dm3] 2L_8573954_SNP [dm6]	G	A	1.319e^-4	0.593	INTRON Sema-1a
2R	7526147	2R_7526147_DEL [dm3] 2R_11638642_DEL [dm6]	CAGAGCTTCTTTGTCTC...	C	1.319e^-4	0.593	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7186682	3L_7186682_SNP [dm3] 3L_7193582_SNP [dm6]	A	T	1.319e^-4	0.593	INTERGENIC
X	7376874	X_7376874_SNP [dm3] X_7482841_SNP [dm6]	A	T	1.328e^-4	0.593	INTERGENIC
X	20405317	X_20405317_SNP [dm3] X_20534290_SNP [dm6]	T	A	1.331e^-4	0.593	INTERGENIC
3L	4792339	3L_4792339_SNP [dm3] 3L_4792339_SNP [dm6]	A	G	1.333e^-4	0.593	SYNONYMOUS_CODING RhoGEF64C	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1081741	3L_1081741_INS [dm3] 3L_1081741_INS [dm6]	C	CGC	1.336e^-4	0.593	INTRON bab1
2L	1314987	2L_1314987_SNP [dm3] 2L_1314987_SNP [dm6]	C	T	1.336e^-4	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	7315802	X_7315802_SNP [dm3] X_7421769_SNP [dm6]	A	G	1.340e^-4	0.593	UTR_3_PRIME CG9657 DOWNSTREAM CG9657
3R	12330162	3R_12330162_SNP [dm3] 3R_16504440_SNP [dm6]	T	A	1.348e^-4	0.593	INTRON CG42342
3R	1527547	3R_1527547_SNP [dm3] 3R_5701825_SNP [dm6]	G	A	1.355e^-4	0.593	UPSTREAM plx INTRON plx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	476983	2L_476983_SNP [dm3] 2L_476983_SNP [dm6]	C	T	1.359e^-4	0.593	UTR_3_PRIME cbt DOWNSTREAM MED15 INTRON ush
3R	13959769	3R_13959769_SNP [dm3] 3R_18134047_SNP [dm6]	A	C	1.360e^-4	0.593	UTR_3_PRIME sr DOWNSTREAM sr
2L	11674981	2L_11674981_SNP [dm3] 2L_11674981_SNP [dm6]	T	A	1.367e^-4	0.593	INTERGENIC
3R	10939957	3R_10939957_SNP [dm3] 3R_15114235_SNP [dm6]	C	T	1.368e^-4	0.593	INTRON CG42788
2L	9670468	2L_9670468_SNP [dm3] 2L_9670468_SNP [dm6]	T	A	1.372e^-4	0.593	EXON CR44150
2L	12797735	2L_12797735_SNP [dm3] 2L_12797735_SNP [dm6]	A	T	1.373e^-4	0.593	INTERGENIC
3L	8875446	3L_8875446_SNP [dm3] 3L_8882346_SNP [dm6]	G	C	1.375e^-4	0.593	INTRON dally
2L	8331503	2L_8331503_SNP [dm3] 2L_8331503_SNP [dm6]	G	A	1.375e^-4	0.593	INTRON CG14275
3R	27089497	3R_27089497_SNP [dm3] 3R_31263775_SNP [dm6]	G	A	1.377e^-4	0.593	SYNONYMOUS_CODING CG18673
X	5628834	X_5628834_SNP [dm3] X_5734801_SNP [dm6]	C	T	1.378e^-4	0.593	DOWNSTREAM CG15773 INTRON CG32758
2R	14120023	2R_14120023_SNP [dm3] 2R_18232518_SNP [dm6]	C	T	1.379e^-4	0.593	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	13837428	2R_13837428_SNP [dm3] 2R_17949923_SNP [dm6]	A	T	1.380e^-4	0.593	INTERGENIC
3L	341993	3L_341993_SNP [dm3] 3L_341993_SNP [dm6]	T	C	1.382e^-4	0.593	UPSTREAM mthl10 INTRON Ptpmeg & 1 other
3L	9880273	3L_9880273_SNP [dm3] 3L_9887173_SNP [dm6]	C	A	1.382e^-4	0.593	SYNONYMOUS_CODING Taf2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9409742	2L_9409742_SNP [dm3] 2L_9409742_SNP [dm6]	G	C	1.385e^-4	0.593	INTRON Shawl
2L	6595188	2L_6595188_SNP [dm3] 2L_6595188_SNP [dm6]	A	T	1.394e^-4	0.593	INTRON CG11319	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19036488	2R_19036488_SNP [dm3] 2R_23148965_SNP [dm6]	A	T	1.395e^-4	0.593	INTERGENIC
2R	14120031	2R_14120031_SNP [dm3] 2R_18232526_SNP [dm6]	C	T	1.398e^-4	0.593	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	3614767	3L_3614767_SNP [dm3] 3L_3614767_SNP [dm6]	G	A	1.398e^-4	0.593	SYNONYMOUS_CODING CG10359 UPSTREAM CG10357
3L	11150098	3L_11150098_SNP [dm3] 3L_11156998_SNP [dm6]	A	T	1.399e^-4	0.593	INTRON CG32082	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14210174	3R_14210174_SNP [dm3] 3R_18384452_SNP [dm6]	G	T	1.402e^-4	0.593	SYNONYMOUS_CODING CG14309
3R	25785239	3R_25785239_SNP [dm3] 3R_29959517_SNP [dm6]	A	G	1.404e^-4	0.593	INTRON TkR99D
X	3153676	X_3153676_SNP [dm3] X_3259643_SNP [dm6]	A	G	1.404e^-4	0.593	INTRON dnc
2R	6879256	2R_6879256_SNP [dm3] 2R_10991751_SNP [dm6]	C	A	1.415e^-4	0.593	INTRON luna	TF binding site mE1_TFBS_chinmo
2L	3448410	2L_3448410_SNP [dm3] 2L_3448410_SNP [dm6]	T	C	1.422e^-4	0.593	DOWNSTREAM CG2772 INTERGENIC
3L	6631574	3L_6631574_SNP [dm3] 3L_6638474_SNP [dm6]	G	C	1.423e^-4	0.593	INTERGENIC
3L	7309602	3L_7309602_SNP [dm3] 3L_7316502_SNP [dm6]	C	T	1.424e^-4	0.593	INTERGENIC
X	3153732	X_3153732_SNP [dm3] X_3259699_SNP [dm6]	T	G	1.425e^-4	0.593	INTRON dnc
2L	16071097	2L_16071097_SNP [dm3] 2L_16071097_SNP [dm6]	C	T	1.441e^-4	0.593	INTRON beat-Ia
X	13010383	X_13010383_SNP [dm3] X_13116350_SNP [dm6]	C	A	1.442e^-4	0.593	INTRON CG42237
2R	10917298	2R_10917298_SNP [dm3] 2R_15029793_SNP [dm6]	A	G	1.442e^-4	0.593	INTRON hbs	TF binding site mE1_TFBS_cad
X	12222462	X_12222462_SNP [dm3] X_12328429_SNP [dm6]	T	C	1.449e^-4	0.593	SYNONYMOUS_CODING Ten-a	TF binding site mE1_TFBS_chinmo
X	8715095	X_8715095_SNP [dm3] X_8821062_SNP [dm6]	C	A	1.453e^-4	0.593	INTERGENIC
2L	12114011	2L_12114011_SNP [dm3] 2L_12114011_SNP [dm6]	T	G	1.454e^-4	0.593	UPSTREAM CG17211 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	20293649	2R_20293649_SNP [dm3] 2R_24406126_SNP [dm6]	G	C	1.457e^-4	0.593	INTRON SerT	TF binding site mE1_TFBS_chinmo
2R	7429486	2R_7429486_SNP [dm3] 2R_11541981_SNP [dm6]	C	A	1.464e^-4	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16140098	2R_16140098_SNP [dm3] 2R_20252593_SNP [dm6]	C	T	1.465e^-4	0.593	INTRON CG9864
2L	5861803	2L_5861803_SNP [dm3] 2L_5861803_SNP [dm6]	C	A	1.472e^-4	0.593	INTRON rau
2L	2502047	2L_2502047_SNP [dm3] 2L_2502047_SNP [dm6]	G	T	1.473e^-4	0.593	INTERGENIC
3L	11164313	3L_11164313_SNP [dm3] 3L_11171213_SNP [dm6]	C	A	1.476e^-4	0.593	NON_SYNONYMOUS_CODING CG7616	TF binding site mE1_TFBS_cad
3L	11160958	3L_11160958_SNP [dm3] 3L_11167858_SNP [dm6]	C	T	1.476e^-4	0.593	NON_SYNONYMOUS_CODING wls INTRON wls	TF binding site BDTNP1_TFBS_twi
3L	7685736	3L_7685736_SNP [dm3] 3L_7692636_SNP [dm6]	T	C	1.478e^-4	0.593	SYNONYMOUS_CODING Ank2 INTRON CG32373 & 2 others
3L	1751888	3L_1751888_SNP [dm3] 3L_1751888_SNP [dm6]	C	T	1.478e^-4	0.593	UTR_3_PRIME CG13921 DOWNSTREAM Cht2
2L	15640465	2L_15640465_INS [dm3] 2L_15640465_INS [dm6]	G	CTA	1.481e^-4	0.593	INTERGENIC
2L	7355153	2L_7355153_SNP [dm3] 2L_7355153_SNP [dm6]	A	G	1.484e^-4	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	14718375	X_14718375_SNP [dm3] X_14824342_SNP [dm6]	T	A	1.486e^-4	0.593	INTRON rut	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19777970	2R_19777970_SNP [dm3] 2R_23890447_SNP [dm6]	A	G	1.488e^-4	0.593	UPSTREAM DNA-ligI & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
2L	9192045	2L_9192045_SNP [dm3] 2L_9192045_SNP [dm6]	A	C	1.492e^-4	0.593	INTRON tai
3L	5876398	3L_5876398_SNP [dm3] 3L_5883298_SNP [dm6]	A	T	1.504e^-4	0.593	NON_SYNONYMOUS_CODING CG13287	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	21409971	3L_21409971_SNP [dm3] 3L_21416871_SNP [dm6]	A	G	1.505e^-4	0.593	INTRON rgn
2R	14223479	2R_14223479_SNP [dm3] 2R_18335974_SNP [dm6]	A	G	1.509e^-4	0.593	INTRON sbb	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	21940924	X_21940924_SNP [dm3] X_22539088_SNP [dm6]	T	G	1.509e^-4	0.593	INTRON CG17600 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	1923010	2L_1923010_SNP [dm3] 2L_1923010_SNP [dm6]	A	C	1.510e^-4	0.593	INTRON CG7337
3R	3329833	3R_3329833_DEL [dm3] 3R_7504111_DEL [dm6]	GAAATTAAAGG...	G	1.512e^-4	0.593	INTRON alpha-Est9
X	3153667	X_3153667_SNP [dm3] X_3259634_SNP [dm6]	G	A	1.512e^-4	0.593	INTRON dnc
2L	18767834	2L_18767834_DEL [dm3] 2L_18767834_DEL [dm6]	GG	G	1.517e^-4	0.593	INTRON ham
2L	20063014	2L_20063014_SNP [dm3] 2L_20063014_SNP [dm6]	C	T	1.519e^-4	0.593	SYNONYMOUS_CODING lok	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1728306	3L_1728306_SNP [dm3] 3L_1728306_SNP [dm6]	C	T	1.520e^-4	0.593	INTRON drpr	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	1135699	2L_1135699_SNP [dm3] 2L_1135699_SNP [dm6]	C	T	1.521e^-4	0.593	INTRON CG4577	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14012976	2R_14012976_DEL [dm3] 2R_18125471_DEL [dm6]	TTCCAT	T	1.523e^-4	0.593	UPSTREAM Spn55B INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4312213	2L_4312213_SNP [dm3] 2L_4312213_SNP [dm6]	T	C	1.524e^-4	0.593	INTRON tutl
3R	22639448	3R_22639448_SNP [dm3] 3R_26813726_SNP [dm6]	A	G	1.528e^-4	0.593	INTRON Tl
X	20760609	X_20760609_SNP [dm3] X_20889582_SNP [dm6]	A	G	1.529e^-4	0.593	INTRON shakB
X	10744311	X_10744311_SNP [dm3] X_10850278_SNP [dm6]	G	A	1.537e^-4	0.593	SYNONYMOUS_CODING CG2202	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15414121	2L_15414121_SNP [dm3] 2L_15414121_SNP [dm6]	C	G	1.541e^-4	0.593	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	12051710	3L_12051710_SNP [dm3] 3L_12058610_SNP [dm6]	C	A	1.545e^-4	0.593	INTRON rols
3R	13672192	3R_13672192_SNP [dm3] 3R_17846470_SNP [dm6]	A	G	1.546e^-4	0.593	INTRON tinc
2R	17519052	2R_17519052_SNP [dm3] 2R_21631547_SNP [dm6]	T	A	1.546e^-4	0.593	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
3L	11162923	3L_11162923_SNP [dm3] 3L_11169823_SNP [dm6]	C	G	1.550e^-4	0.593	UTR_5_PRIME CG7616 UPSTREAM CG7616 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	11554275	3L_11554275_INS [dm3] 3L_11561175_INS [dm6]	A	AGACA	1.553e^-4	0.593	UPSTREAM CG7394 INTRON Mob2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	13964233	3L_13964233_SNP [dm3] 3L_13971133_SNP [dm6]	G	A	1.559e^-4	0.593	INTRON ssp2 & 1 other	TF binding site mE1_TFBS_cad
2R	14406833	2R_14406833_SNP [dm3] 2R_18519328_SNP [dm6]	G	A	1.562e^-4	0.593	SYNONYMOUS_CODING CG43066	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14347158	2L_14347158_SNP [dm3] 2L_14347158_SNP [dm6]	A	G	1.565e^-4	0.593	UPSTREAM Send2 DOWNSTREAM mTTF INTERGENIC
2L	6237149	2L_6237149_SNP [dm3] 2L_6237149_SNP [dm6]	G	A	1.565e^-4	0.593	INTERGENIC
2R	20103103	2R_20103103_SNP [dm3] 2R_24215580_SNP [dm6]	C	T	1.568e^-4	0.593	SYNONYMOUS_CODING CG30419	TF binding site mE1_TFBS_chinmo
3R	3131436	3R_3131436_SNP [dm3] 3R_7305714_SNP [dm6]	G	C	1.572e^-4	0.593	DOWNSTREAM CG42544 INTRON rn
2L	20061540	2L_20061540_SNP [dm3] 2L_20061540_SNP [dm6]	A	G	1.572e^-4	0.593	UTR_5_PRIME lok UPSTREAM barr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	5526281	2L_5526281_SNP [dm3] 2L_5526281_SNP [dm6]	C	T	1.575e^-4	0.593	SYNONYMOUS_CODING Cap-D3 UPSTREAM CG31648 DOWNSTREAM CG6907 EXON CR44793	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	5349376	2L_5349376_SNP [dm3] 2L_5349376_SNP [dm6]	T	G	1.579e^-4	0.593	INTRON nompC
X	7315806	X_7315806_SNP [dm3] X_7421773_SNP [dm6]	C	G	1.580e^-4	0.593	UTR_3_PRIME CG9657 DOWNSTREAM CG9657
3L	3339172	3L_3339172_SNP [dm3] 3L_3339172_SNP [dm6]	T	C	1.588e^-4	0.593	INTRON kst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	20882541	3L_20882541_SNP [dm3] 3L_20889441_SNP [dm6]	G	A	1.590e^-4	0.593	INTERGENIC
2R	10570102	2R_10570102_SNP [dm3] 2R_14682597_SNP [dm6]	T	A	1.591e^-4	0.593	INTRON mspo
3L	20882540	3L_20882540_SNP [dm3] 3L_20889440_SNP [dm6]	C	G	1.591e^-4	0.593	INTERGENIC
2L	12796966	2L_12796966_SNP [dm3] 2L_12796966_SNP [dm6]	C	G	1.593e^-4	0.593	INTERGENIC
2L	7860163	2L_7860163_SNP [dm3] 2L_7860163_SNP [dm6]	T	G	1.594e^-4	0.593	DOWNSTREAM lectin-28C INTRON TwdlE	TF binding site BDTNP1_TFBS_twi
2R	15285063	2R_15285063_SNP [dm3] 2R_19397558_SNP [dm6]	T	C	1.598e^-4	0.593	UTR_3_PRIME hts UPSTREAM cer DOWNSTREAM hts
2L	13753512	2L_13753512_SNP [dm3] 2L_13753512_SNP [dm6]	T	G	1.600e^-4	0.593	INTRON CR44846 & 1 other EXON CR44846
3L	15646612	3L_15646612_SNP [dm3] 3L_15653512_SNP [dm6]	G	A	1.601e^-4	0.593	DOWNSTREAM Eig71Ed & 1 other INTERGENIC
2R	15452659	2R_15452659_SNP [dm3] 2R_19565154_SNP [dm6]	A	T	1.604e^-4	0.593	UPSTREAM tRNA:CR33535 INTRON sm
2L	7355124	2L_7355124_SNP [dm3] 2L_7355124_SNP [dm6]	T	G	1.611e^-4	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	6448719	2L_6448719_SNP [dm3] 2L_6448719_SNP [dm6]	A	C	1.612e^-4	0.593	UTR_3_PRIME retm UPSTREAM CG9527 DOWNSTREAM retm	TF binding site mE1_TFBS_kn
2L	916326	2L_916326_SNP [dm3] 2L_916326_SNP [dm6]	A	G	1.613e^-4	0.593	SYNONYMOUS_CODING GluRIIC	TF binding site mE1_TFBS_inv
3R	5478605	3R_5478605_SNP [dm3] 3R_9652883_SNP [dm6]	A	C	1.618e^-4	0.594	SYNONYMOUS_CODING CG43441 INTRON CG9492
2L	21037950	2L_21037950_SNP [dm3] 2L_21037950_SNP [dm6]	G	A	1.629e^-4	0.596	INTRON CG42238	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
2L	12552283	2L_12552283_SNP [dm3] 2L_12552283_SNP [dm6]	A	G	1.642e^-4	0.596	INTERGENIC
3L	12461900	3L_12461900_SNP [dm3] 3L_12468800_SNP [dm6]	T	C	1.644e^-4	0.596	UPSTREAM eyg DOWNSTREAM CG32102 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
2L	485935	2L_485935_SNP [dm3] 2L_485935_SNP [dm6]	G	A	1.645e^-4	0.596	INTRON ush	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	5904696	3L_5904696_SNP [dm3] 3L_5911596_SNP [dm6]	T	G	1.653e^-4	0.596	INTRON CG13288
2R	6740279	2R_6740279_SNP [dm3] 2R_10852774_SNP [dm6]	T	A	1.653e^-4	0.596	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2L	9640698	2L_9640698_SNP [dm3] 2L_9640698_SNP [dm6]	A	T	1.654e^-4	0.596	INTRON Apoltp
2L	11685637	2L_11685637_SNP [dm3] 2L_11685637_SNP [dm6]	T	C	1.654e^-4	0.596	INTERGENIC
2R	10785668	2R_10785668_SNP [dm3] 2R_14898163_SNP [dm6]	C	G	1.654e^-4	0.596	UPSTREAM Cyp317a1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6349506	3L_6349506_SNP [dm3] 3L_6356406_SNP [dm6]	G	A	1.661e^-4	0.596	INTERGENIC
2L	7756056	2L_7756056_SNP [dm3] 2L_7756056_SNP [dm6]	G	T	1.663e^-4	0.596	UPSTREAM CG14538 INTRON CG7196	TF binding site mE1_TFBS_chinmo
3R	12089129	3R_12089129_SNP [dm3] 3R_16263407_SNP [dm6]	C	T	1.663e^-4	0.596	SYNONYMOUS_CODING bor UPSTREAM asun	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	13932143	2R_13932143_SNP [dm3] 2R_18044638_SNP [dm6]	G	A	1.676e^-4	0.596	SYNONYMOUS_CODING CG5770 UPSTREAM CG5773
3L	7637550	3L_7637550_SNP [dm3] 3L_7644450_SNP [dm6]	T	G	1.681e^-4	0.596	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	5686959	3L_5686959_SNP [dm3] 3L_5693859_SNP [dm6]	C	T	1.684e^-4	0.596	INTRON sif
3R	17363018	3R_17363018_SNP [dm3] 3R_21537296_SNP [dm6]	C	A	1.687e^-4	0.596	INTERGENIC	TF binding site mE1_TFBS_cad
X	20587994	X_20587994_SNP [dm3] X_20716967_SNP [dm6]	C	T	1.688e^-4	0.596	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3L	13964155	3L_13964155_SNP [dm3] 3L_13971055_SNP [dm6]	G	C	1.688e^-4	0.596	SYNONYMOUS_CODING ssp2 UTR_3_PRIME Nxf3	TF binding site mE1_TFBS_cad
3R	1778218	3R_1778218_SNP [dm3] 3R_5952496_SNP [dm6]	T	A	1.696e^-4	0.596	INTRON CG34113
2L	9778789	2L_9778789_SNP [dm3] 2L_9778789_SNP [dm6]	C	A	1.707e^-4	0.596	INTERGENIC
2L	17788913	2L_17788913_DEL [dm3] 2L_17788913_DEL [dm6]	TT	T	1.711e^-4	0.596	INTRON CadN2
2R	9742019	2R_9742019_SNP [dm3] 2R_13854514_SNP [dm6]	T	C	1.713e^-4	0.596	UPSTREAM CR44367 & 1 other DOWNSTREAM CG6553 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	16616991	3R_16616991_SNP [dm3] 3R_20791269_SNP [dm6]	A	T	1.715e^-4	0.596	INTRON Syp	TF binding site BDTNP1_TFBS_twi
3L	1837189	3L_1837189_SNP [dm3] 3L_1837189_SNP [dm6]	C	T	1.723e^-4	0.596	INTERGENIC
X	3539966	X_3539966_SNP [dm3] X_3645933_SNP [dm6]	A	T	1.724e^-4	0.596	INTRON AstA-R1
3L	6939789	3L_6939789_SNP [dm3] 3L_6946689_SNP [dm6]	A	G	1.724e^-4	0.596	INTRON tow
2R	14242977	2R_14242977_SNP [dm3] 2R_18355472_SNP [dm6]	A	G	1.735e^-4	0.596	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	24203714	3R_24203714_SNP [dm3] 3R_28377992_SNP [dm6]	T	A	1.749e^-4	0.596	INTERGENIC
3R	12189329	3R_12189329_SNP [dm3] 3R_16363607_SNP [dm6]	C	T	1.749e^-4	0.596	INTRON CG14880	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	18516749	2R_18516749_SNP [dm3] 2R_22629244_SNP [dm6]	A	G	1.751e^-4	0.596	INTRON CG33143	TF binding site mE1_TFBS_chinmo
2L	2602377	2L_2602377_SNP [dm3] 2L_2602377_SNP [dm6]	C	T	1.751e^-4	0.596	UPSTREAM CR44789 INTERGENIC
2R	12641030	2R_12641030_SNP [dm3] 2R_16753525_SNP [dm6]	C	T	1.754e^-4	0.596	SYNONYMOUS_CODING unc-104 UPSTREAM CG34189
2L	9772806	2L_9772806_SNP [dm3] 2L_9772806_SNP [dm6]	A	G	1.765e^-4	0.596	SYNONYMOUS_CODING ppk16 DOWNSTREAM ppk11
2R	10802875	2R_10802875_SNP [dm3] 2R_14915370_SNP [dm6]	G	A	1.768e^-4	0.596	INTRON CG10249
X	18910646	X_18910646_INS [dm3] X_19016613_INS [dm6]	CGTTTAAAT	AGCCAACAACA...	1.774e^-4	0.596	INTRON CG43759
2R	19567011	2R_19567011_SNP [dm3] 2R_23679488_SNP [dm6]	G	A	1.777e^-4	0.596	UTR_3_PRIME Pde8 DOWNSTREAM Pde8
X	7373152	X_7373152_SNP [dm3] X_7479119_SNP [dm6]	C	T	1.780e^-4	0.596	INTERGENIC
3R	1778213	3R_1778213_SNP [dm3] 3R_5952491_SNP [dm6]	A	T	1.782e^-4	0.596	INTRON CG34113
2L	17324983	2L_17324983_SNP [dm3] 2L_17324983_SNP [dm6]	G	T	1.785e^-4	0.596	INTERGENIC
3L	13129556	3L_13129556_SNP [dm3] 3L_13136456_SNP [dm6]	C	A	1.790e^-4	0.596	SPLICE_SITE_REGION CG33262 INTRON CG33262	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1148240	3R_1148240_SNP [dm3] 3R_5322518_SNP [dm6]	G	T	1.791e^-4	0.596	INTRON mtd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	2708807	2L_2708807_SNP [dm3] 2L_2708807_SNP [dm6]	C	T	1.793e^-4	0.596	INTRON CG31690
X	6349312	X_6349312_SNP [dm3] X_6455279_SNP [dm6]	C	G	1.793e^-4	0.596	INTRON CG42340
X	13332836	X_13332836_DEL [dm3] X_13438803_DEL [dm6]	GTGAAACGAATTGCTGC...	G	1.795e^-4	0.596	INTERGENIC
X	13332856	X_13332856_DEL [dm3] X_13438823_DEL [dm6]	GAAATTGAAGCAAATTGGAG...	G	1.795e^-4	0.596	INTERGENIC
2R	2405020	2R_2405020_SNP [dm3] 2R_6517515_SNP [dm6]	C	A	1.801e^-4	0.596	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14858012	X_14858012_SNP [dm3] X_14963979_SNP [dm6]	A	G	1.802e^-4	0.596	INTRON eag
2R	8941367	2R_8941367_SNP [dm3] 2R_13053862_SNP [dm6]	G	A	1.805e^-4	0.596	INTERGENIC
2R	6453811	2R_6453811_SNP [dm3] 2R_10566306_SNP [dm6]	T	C	1.815e^-4	0.596	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	18315191	2R_18315191_DEL [dm3] 2R_22427686_DEL [dm6]	TT	T	1.816e^-4	0.596	SPLICE_SITE_REGION ppk12 UPSTREAM CG10344 INTRON ppk12
3L	4792315	3L_4792315_SNP [dm3] 3L_4792315_SNP [dm6]	C	T	1.817e^-4	0.596	SYNONYMOUS_CODING RhoGEF64C	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8155849	3L_8155849_SNP [dm3] 3L_8162749_SNP [dm6]	A	T	1.818e^-4	0.596	INTRON CG13675
2R	6718570	2R_6718570_SNP [dm3] 2R_10831065_SNP [dm6]	G	T	1.820e^-4	0.596	INTRON CG12344	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	472697	2L_472697_SNP [dm3] 2L_472697_SNP [dm6]	G	C	1.828e^-4	0.596	UPSTREAM MED15 & 1 other INTRON CG4297	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16987163	3L_16987163_SNP [dm3] 3L_16994063_SNP [dm6]	G	C	1.830e^-4	0.596	SYNONYMOUS_CODING Exn DOWNSTREAM CG3764	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3643689	3L_3643689_SNP [dm3] 3L_3643689_SNP [dm6]	T	A	1.837e^-4	0.596	INTRON dar1
2L	13118792	2L_13118792_SNP [dm3] 2L_13118792_SNP [dm6]	A	G	1.839e^-4	0.596	UPSTREAM CG43050 DOWNSTREAM CR44198 INTERGENIC
2L	21039786	2L_21039786_SNP [dm3] 2L_21039786_SNP [dm6]	C	T	1.839e^-4	0.596	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	9174137	2R_9174137_SNP [dm3] 2R_13286632_SNP [dm6]	C	A	1.840e^-4	0.596	INTRON Dh31-R
2R	9444473	2R_9444473_SNP [dm3] 2R_13556968_SNP [dm6]	G	A	1.847e^-4	0.596	SYNONYMOUS_CODING link DOWNSTREAM snoRNA:Psi28S-1153 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	2811918	2R_2811918_SNP [dm3] 2R_6924413_SNP [dm6]	C	A	1.848e^-4	0.596	NON_SYNONYMOUS_CODING CG3358 DOWNSTREAM mim	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	20061292	2L_20061292_SNP [dm3] 2L_20061292_SNP [dm6]	C	T	1.852e^-4	0.596	UTR_5_PRIME barr UPSTREAM lok & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	9444458	2R_9444458_SNP [dm3] 2R_13556953_SNP [dm6]	G	A	1.852e^-4	0.596	NON_SYNONYMOUS_CODING link DOWNSTREAM snoRNA:Psi28S-1153 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	10504656	3R_10504656_SNP [dm3] 3R_14678934_SNP [dm6]	T	G	1.856e^-4	0.596	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	20760602	X_20760602_SNP [dm3] X_20889575_SNP [dm6]	A	G	1.861e^-4	0.596	INTRON shakB
2R	15482986	2R_15482986_SNP [dm3] 2R_19595481_SNP [dm6]	A	C	1.865e^-4	0.596	SYNONYMOUS_CODING CG16716 INTRON sm
2L	6595172	2L_6595172_SNP [dm3] 2L_6595172_SNP [dm6]	C	G	1.866e^-4	0.596	INTRON CG11319	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6444786	2R_6444786_SNP [dm3] 2R_10557281_SNP [dm6]	T	C	1.867e^-4	0.596	UPSTREAM psq INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26025784	3R_26025784_INS [dm3] 3R_30200062_INS [dm6]	A	AGGAAAA	1.870e^-4	0.596	INTRON CG9743
3L	2491566	3L_2491566_SNP [dm3] 3L_2491566_SNP [dm6]	A	G	1.874e^-4	0.596	SYNONYMOUS_CODING CG1146 INTRON CG45186	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13734570	X_13734570_SNP [dm3] X_13840537_SNP [dm6]	T	C	1.875e^-4	0.596	UPSTREAM AMPdeam INTRON AMPdeam
2L	17639711	2L_17639711_SNP [dm3] 2L_17639711_SNP [dm6]	A	G	1.878e^-4	0.596	INTERGENIC
X	8607067	X_8607067_SNP [dm3] X_8713034_SNP [dm6]	C	T	1.888e^-4	0.596	NON_SYNONYMOUS_CODING CG2004 DOWNSTREAM Hexo2
2R	14171771	2R_14171771_SNP [dm3] 2R_18284266_SNP [dm6]	A	C	1.888e^-4	0.596	NON_SYNONYMOUS_CODING sbb DOWNSTREAM sbb	TF binding site mE1_TFBS_cad
3L	6349528	3L_6349528_SNP [dm3] 3L_6356428_SNP [dm6]	C	T	1.890e^-4	0.596	INTERGENIC
2R	7422720	2R_7422720_SNP [dm3] 2R_11535215_SNP [dm6]	G	A	1.891e^-4	0.596	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11748689	2R_11748689_SNP [dm3] 2R_15861184_SNP [dm6]	G	A	1.892e^-4	0.596	START_GAINED Gpo-1 UTR_5_PRIME Gpo-1 INTRON Gpo-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8139878	3R_8139878_SNP [dm3] 3R_12314156_SNP [dm6]	G	A	1.898e^-4	0.596	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	540853	3L_540853_DEL [dm3] 3L_540853_DEL [dm6]	AA	A	1.901e^-4	0.596	UTR_5_PRIME CG17180 UPSTREAM CG17180 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	7559528	3L_7559528_SNP [dm3] 3L_7566428_SNP [dm6]	C	T	1.903e^-4	0.596	NON_SYNONYMOUS_CODING frac INTRON frac	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8356999	X_8356999_SNP [dm3] X_8462966_SNP [dm6]	C	T	1.908e^-4	0.596	SYNONYMOUS_CODING Es2 DOWNSTREAM Sptr	TF binding site mE1_TFBS_cad
3L	7552010	3L_7552010_SNP [dm3] 3L_7558910_SNP [dm6]	G	C	1.909e^-4	0.596	INTRON CG14837
2R	6127045	2R_6127045_SNP [dm3] 2R_10239540_SNP [dm6]	T	C	1.913e^-4	0.596	UPSTREAM Hdc INTRON Hdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	14721025	X_14721025_SNP [dm3] X_14826992_SNP [dm6]	T	G	1.913e^-4	0.596	UTR_3_PRIME CG14408 UPSTREAM rut DOWNSTREAM CG14408	TF binding site mE1_TFBS_HSA
2L	15412034	2L_15412034_SNP [dm3] 2L_15412034_SNP [dm6]	A	C	1.913e^-4	0.596	INTERGENIC
2R	7029098	2R_7029098_SNP [dm3] 2R_11141593_SNP [dm6]	A	T	1.915e^-4	0.596	INTRON CG13229
3L	21409953	3L_21409953_SNP [dm3] 3L_21416853_SNP [dm6]	A	G	1.925e^-4	0.596	INTRON rgn
2R	19258093	2R_19258093_SNP [dm3] 2R_23370570_SNP [dm6]	C	T	1.925e^-4	0.596	NON_SYNONYMOUS_CODING Ice1 DOWNSTREAM Golgin245	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9778766	2L_9778766_SNP [dm3] 2L_9778766_SNP [dm6]	T	C	1.926e^-4	0.596	INTERGENIC
2L	20053742	2L_20053742_SNP [dm3] 2L_20053742_SNP [dm6]	C	G	1.926e^-4	0.596	INTRON sNPF
2L	9576376	2L_9576376_SNP [dm3] 2L_9576376_SNP [dm6]	T	C	1.928e^-4	0.596	UTR_5_PRIME Mtpalpha INTRON Mtpalpha	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	11590173	3R_11590173_SNP [dm3] 3R_15764451_SNP [dm6]	C	T	1.933e^-4	0.596	DOWNSTREAM CG12784 INTERGENIC
3L	4790623	3L_4790623_SNP [dm3] 3L_4790623_SNP [dm6]	G	C	1.933e^-4	0.596	SYNONYMOUS_CODING RhoGEF64C	TF binding site mE1_TFBS_chinmo
2L	488487	2L_488487_SNP [dm3] 2L_488487_SNP [dm6]	C	T	1.935e^-4	0.596	INTRON ush	TF binding site mE1_TFBS_Trl
3L	5140526	3L_5140526_SNP [dm3] 3L_5147426_SNP [dm6]	C	A	1.938e^-4	0.596	INTRON Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	18015505	3R_18015505_SNP [dm3] 3R_22189783_SNP [dm6]	A	G	1.939e^-4	0.596	INTRON SKIP
3R	1765902	3R_1765902_SNP [dm3] 3R_5940180_SNP [dm6]	C	G	1.942e^-4	0.596	INTRON CG34113	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	1419870	3L_1419870_INS [dm3] 3L_1419870_INS [dm6]	C	CT	1.945e^-4	0.596	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	17790348	2L_17790348_SNP [dm3] 2L_17790348_SNP [dm6]	T	C	1.947e^-4	0.596	INTRON CadN2
3L	13345056	3L_13345056_SNP [dm3] 3L_13351956_SNP [dm6]	A	T	1.949e^-4	0.596	SYNONYMOUS_CODING CG17687
X	3153799	X_3153799_SNP [dm3] X_3259766_SNP [dm6]	G	C	1.950e^-4	0.596	INTRON dnc
2L	11682650	2L_11682650_SNP [dm3] 2L_11682650_SNP [dm6]	C	T	1.961e^-4	0.596	INTERGENIC
2L	8139374	2L_8139374_SNP [dm3] 2L_8139374_SNP [dm6]	C	G	1.963e^-4	0.596	NON_SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
2L	13122503	2L_13122503_SNP [dm3] 2L_13122503_SNP [dm6]	T	C	1.964e^-4	0.596	INTERGENIC
3L	15678575	3L_15678575_SNP [dm3] 3L_15685475_SNP [dm6]	C	T	1.965e^-4	0.596	SYNONYMOUS_CODING pgant8 DOWNSTREAM CG34452	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18015474	3R_18015474_SNP [dm3] 3R_22189752_SNP [dm6]	G	A	1.968e^-4	0.596	INTRON SKIP
2R	16361886	2R_16361886_INS [dm3] 2R_20474381_INS [dm6]	G	GATCTCA	1.968e^-4	0.596	INTRON CG12484
3R	11769208	3R_11769208_SNP [dm3] 3R_15943486_SNP [dm6]	T	G	1.971e^-4	0.596	INTRON Sap47	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	27088093	3R_27088093_SNP [dm3] 3R_31262371_SNP [dm6]	G	A	1.974e^-4	0.596	UPSTREAM CG18673 DOWNSTREAM CG18672 INTERGENIC
2L	20036725	2L_20036725_SNP [dm3] 2L_20036725_SNP [dm6]	C	A	1.978e^-4	0.596	INTRON sNPF
2R	18340822	2R_18340822_SNP [dm3] 2R_22453317_SNP [dm6]	T	C	1.981e^-4	0.596	INTERGENIC
3R	18015384	3R_18015384_SNP [dm3] 3R_22189662_SNP [dm6]	C	G	1.983e^-4	0.596	INTRON SKIP
2L	1585023	2L_1585023_SNP [dm3] 2L_1585023_SNP [dm6]	G	A	1.990e^-4	0.596	SYNONYMOUS_CODING CG10869 INTRON haf
2L	3381831	2L_3381831_SNP [dm3] 2L_3381831_SNP [dm6]	G	A	1.991e^-4	0.596	INTERGENIC
2L	20061703	2L_20061703_SNP [dm3] 2L_20061703_SNP [dm6]	G	A	1.997e^-4	0.596	UTR_5_PRIME lok UPSTREAM barr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	7559523	3L_7559523_SNP [dm3] 3L_7566423_SNP [dm6]	T	A	1.998e^-4	0.596	NON_SYNONYMOUS_CODING frac INTRON frac	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3341960	3L_3341960_SNP [dm3] 3L_3341960_SNP [dm6]	C	G	1.999e^-4	0.596	INTRON kst
2L	20025967	2L_20025967_SNP [dm3] 2L_20025967_SNP [dm6]	T	A	2.002e^-4	0.596	UPSTREAM CG10659 INTERGENIC	transposable element FlyBase
2L	5797038	2L_5797038_SNP [dm3] 2L_5797038_SNP [dm6]	A	G	2.003e^-4	0.596	INTRON CG9171
3R	11810983	3R_11810983_SNP [dm3] 3R_15985261_SNP [dm6]	G	A	2.006e^-4	0.596	UPSTREAM srp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9882370	3L_9882370_SNP [dm3] 3L_9889270_SNP [dm6]	A	G	2.007e^-4	0.596	UTR_5_PRIME CalpB UPSTREAM Taf2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11596388	3L_11596388_SNP [dm3] 3L_11603288_SNP [dm6]	A	C	2.020e^-4	0.598	INTRON CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1176661	2L_1176661_SNP [dm3] 2L_1176661_SNP [dm6]	G	C	2.030e^-4	0.599	NON_SYNONYMOUS_CODING CG4887	TF binding site mE1_TFBS_sens
3L	4281052	3L_4281052_SNP [dm3] 3L_4281052_SNP [dm6]	T	G	2.030e^-4	0.599	SYNONYMOUS_CODING CG1311 DOWNSTREAM CG11583
2L	5099236	2L_5099236_SNP [dm3] 2L_5099236_SNP [dm6]	C	T	2.031e^-4	0.599	UTR_3_PRIME CG4230 & 1 other DOWNSTREAM CG8680 & 1 other	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	2171337	2L_2171337_SNP [dm3] 2L_2171337_SNP [dm6]	T	A	2.037e^-4	0.6	INTRON aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	10940020	3R_10940020_SNP [dm3] 3R_15114298_SNP [dm6]	C	A	2.044e^-4	0.6	INTRON CG42788
X	2485767	X_2485767_SNP [dm3] X_2591734_SNP [dm6]	C	A	2.046e^-4	0.6	UPSTREAM egh INTRON egh
4	411917	4_411917_SNP [dm3] 4_391291_SNP [dm6]	A	T	2.053e^-4	0.6	NON_SYNONYMOUS_CODING Lin29	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	6444798	2R_6444798_SNP [dm3] 2R_10557293_SNP [dm6]	T	A	2.056e^-4	0.6	UPSTREAM psq INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18015446	3R_18015446_SNP [dm3] 3R_22189724_SNP [dm6]	C	T	2.058e^-4	0.6	INTRON SKIP
2R	17677773	2R_17677773_SNP [dm3] 2R_21790268_SNP [dm6]	C	A	2.060e^-4	0.6	INTRON lox2
2L	13094850	2L_13094850_SNP [dm3] 2L_13094850_SNP [dm6]	G	A	2.060e^-4	0.6	INTERGENIC
3L	21054881	3L_21054881_SNP [dm3] 3L_21061781_SNP [dm6]	T	G	2.069e^-4	0.602	INTRON siz	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8941366	2R_8941366_SNP [dm3] 2R_13053861_SNP [dm6]	A	T	2.078e^-4	0.603	INTERGENIC
2R	9069682	2R_9069682_SNP [dm3] 2R_13182177_SNP [dm6]	T	C	2.083e^-4	0.603	SYNONYMOUS_CODING seq START_GAINED CG17724 UTR_5_PRIME CG17724 INTRON CG17724 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
4	119386	4_119386_SNP [dm3] 4_98760_SNP [dm6]	T	A	2.093e^-4	0.603	INTRON pan
2L	17324984	2L_17324984_SNP [dm3] 2L_17324984_SNP [dm6]	T	C	2.096e^-4	0.603	INTERGENIC
2R	9975980	2R_9975980_SNP [dm3] 2R_14088475_SNP [dm6]	G	A	2.100e^-4	0.603	INTRON Prosap
2R	8942741	2R_8942741_SNP [dm3] 2R_13055236_SNP [dm6]	C	T	2.103e^-4	0.603	DOWNSTREAM Drl-2 INTERGENIC
3L	6303545	3L_6303545_SNP [dm3] 3L_6310445_SNP [dm6]	G	A	2.105e^-4	0.603	INTERGENIC	TF binding site mE1_TFBS_cad
3R	8216931	3R_8216931_SNP [dm3] 3R_12391209_SNP [dm6]	A	G	2.106e^-4	0.603	SYNONYMOUS_CODING CG10096 UTR_3_PRIME CG10097 INTRON CG34402
3R	3301969	3R_3301969_SNP [dm3] 3R_7476247_SNP [dm6]	C	T	2.113e^-4	0.603	UPSTREAM tRNA:V3b:84Dd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	6303515	3L_6303515_SNP [dm3] 3L_6310415_SNP [dm6]	A	G	2.114e^-4	0.603	INTERGENIC	TF binding site mE1_TFBS_cad
2L	10351338	2L_10351338_SNP [dm3] 2L_10351338_SNP [dm6]	T	C	2.115e^-4	0.603	INTRON CG34367	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9748814	3R_9748814_SNP [dm3] 3R_13923092_SNP [dm6]	C	G	2.123e^-4	0.603	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	13226548	X_13226548_SNP [dm3] X_13332515_SNP [dm6]	G	A	2.131e^-4	0.603	DOWNSTREAM Jafrac1 INTERGENIC
2L	16656265	2L_16656265_SNP [dm3] 2L_16656265_SNP [dm6]	A	T	2.138e^-4	0.603	UPSTREAM CG42389 INTRON CG42389
2L	16656278	2L_16656278_SNP [dm3] 2L_16656278_SNP [dm6]	T	A	2.138e^-4	0.603	UPSTREAM CG42389 INTRON CG42389
2L	13629346	2L_13629346_SNP [dm3] 2L_13629346_SNP [dm6]	G	T	2.142e^-4	0.603	INTRON kuz
3L	4611713	3L_4611713_SNP [dm3] 3L_4611713_SNP [dm6]	A	G	2.143e^-4	0.603	INTRON Src64B	TF binding site BDTNP1_TFBS_twi
2R	8652319	2R_8652319_SNP [dm3] 2R_12764814_SNP [dm6]	T	C	2.144e^-4	0.603	DOWNSTREAM CG12374 INTERGENIC
X	20020617	X_20020617_SNP [dm3] X_20126584_SNP [dm6]	A	G	2.151e^-4	0.603	INTERGENIC
2R	8949103	2R_8949103_SNP [dm3] 2R_13061598_SNP [dm6]	T	C	2.154e^-4	0.603	INTRON Drl-2
2L	7211591	2L_7211591_SNP [dm3] 2L_7211591_SNP [dm6]	T	G	2.157e^-4	0.603	INTRON CG13784	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14119939	2R_14119939_SNP [dm3] 2R_18232434_SNP [dm6]	C	A	2.161e^-4	0.603	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	2390435	X_2390435_SNP [dm3] X_2496402_SNP [dm6]	T	G	2.168e^-4	0.603	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17874254	3R_17874254_SNP [dm3] 3R_22048532_SNP [dm6]	A	G	2.168e^-4	0.603	INTRON how	TF binding site BDTNP1_TFBS_twi
2L	1581850	2L_1581850_SNP [dm3] 2L_1581850_SNP [dm6]	G	C	2.173e^-4	0.603	INTRON haf
3R	3325127	3R_3325127_SNP [dm3] 3R_7499405_SNP [dm6]	C	T	2.173e^-4	0.603	INTRON alpha-Est9
3R	18015396	3R_18015396_DEL [dm3] 3R_22189674_DEL [dm6]	AATGAA	A	2.177e^-4	0.603	INTRON SKIP
2R	12108382	2R_12108382_SNP [dm3] 2R_16220877_SNP [dm6]	G	T	2.178e^-4	0.603	UPSTREAM CR43898 DOWNSTREAM tRNA:CR30240 INTRON mrj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	3277404	3R_3277404_SNP [dm3] 3R_7451682_SNP [dm6]	T	G	2.179e^-4	0.603	UPSTREAM tRNA:V3b:84Da DOWNSTREAM tRNA:V3b:84Db & 1 other INTERGENIC	transposable element FlyBase
X	19389220	X_19389220_SNP [dm3] X_19495187_SNP [dm6]	A	G	2.186e^-4	0.603	UPSTREAM CG12204 & 3 others DOWNSTREAM CR44340 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
2L	15412016	2L_15412016_SNP [dm3] 2L_15412016_SNP [dm6]	C	A	2.187e^-4	0.603	INTERGENIC
2L	21039623	2L_21039623_SNP [dm3] 2L_21039623_SNP [dm6]	T	A	2.189e^-4	0.603	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	10290268	3R_10290268_SNP [dm3] 3R_14464546_SNP [dm6]	T	G	2.191e^-4	0.603	INTRON cv-c
2L	20269909	2L_20269909_SNP [dm3] 2L_20269909_SNP [dm6]	A	C	2.194e^-4	0.603	INTERGENIC
2L	20107655	2L_20107655_SNP [dm3] 2L_20107655_SNP [dm6]	T	A	2.195e^-4	0.603	INTERGENIC	transposable element FlyBase
2L	488405	2L_488405_SNP [dm3] 2L_488405_SNP [dm6]	A	G	2.196e^-4	0.603	INTRON ush	TF binding site mE1_TFBS_Trl
3L	5008208	3L_5008208_SNP [dm3] 3L_5008208_SNP [dm6]	A	T	2.198e^-4	0.603	INTRON Con
2L	8350496	2L_8350496_SNP [dm3] 2L_8350496_SNP [dm6]	C	T	2.199e^-4	0.603	UTR_3_PRIME CG7778 DOWNSTREAM CG7778	TF binding site mE1_TFBS_zfh1
2L	10349351	2L_10349351_INS [dm3] 2L_10349351_INS [dm6]	A	ACACTTAT	2.202e^-4	0.603	INTRON CG34367
2L	17790349	2L_17790349_SNP [dm3] 2L_17790349_SNP [dm6]	A	G	2.202e^-4	0.603	INTRON CadN2
3L	4791118	3L_4791118_SNP [dm3] 3L_4791118_SNP [dm6]	A	G	2.213e^-4	0.605	SYNONYMOUS_CODING RhoGEF64C	TF binding site mE1_TFBS_chinmo
X	7373806	X_7373806_SNP [dm3] X_7479773_SNP [dm6]	T	A	2.218e^-4	0.605	INTERGENIC
X	8577402	X_8577402_SNP [dm3] X_8683369_SNP [dm6]	G	T	2.225e^-4	0.605	INTRON CG11284	TF binding site mE1_TFBS_sens
2L	8786699	2L_8786699_SNP [dm3] 2L_8786699_SNP [dm6]	C	G	2.227e^-4	0.605	INTERGENIC
X	9385674	X_9385674_SNP [dm3] X_9491641_SNP [dm6]	A	G	2.227e^-4	0.605	INTRON mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22939803	3R_22939803_SNP [dm3] 3R_27114081_SNP [dm6]	C	T	2.236e^-4	0.606	SYNONYMOUS_CODING CG5815
2R	7039506	2R_7039506_SNP [dm3] 2R_11152001_SNP [dm6]	T	C	2.237e^-4	0.606	INTRON CG13229
X	8356666	X_8356666_SNP [dm3] X_8462633_SNP [dm6]	G	A	2.238e^-4	0.606	SYNONYMOUS_CODING Es2 DOWNSTREAM Sptr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11756334	3L_11756334_SNP [dm3] 3L_11763234_SNP [dm6]	C	T	2.244e^-4	0.606	INTRON CG6024
3L	5858643	3L_5858643_SNP [dm3] 3L_5865543_SNP [dm6]	T	C	2.244e^-4	0.606	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20106312	2L_20106312_SNP [dm3] 2L_20106312_SNP [dm6]	C	G	2.262e^-4	0.61	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
X	19723639	X_19723639_INS [dm3] X_19829606_INS [dm6]	T	TG	2.266e^-4	0.61	DOWNSTREAM pico INTERGENIC
X	9181007	X_9181007_INS [dm3] X_9286974_INS [dm6]	A	AA	2.276e^-4	0.61	INTRON lz
2L	20774916	2L_20774916_SNP [dm3] 2L_20774916_SNP [dm6]	G	A	2.284e^-4	0.61	INTRON cad	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	19780312	2R_19780312_SNP [dm3] 2R_23892789_SNP [dm6]	T	C	2.285e^-4	0.61	SYNONYMOUS_CODING DNA-ligI DOWNSTREAM Upf3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7420889	3L_7420889_SNP [dm3] 3L_7427789_SNP [dm6]	A	T	2.285e^-4	0.61	INTRON CG42458
3L	7635246	3L_7635246_SNP [dm3] 3L_7642146_SNP [dm6]	G	A	2.286e^-4	0.61	UPSTREAM CG7506 INTERGENIC	TF binding site mE1_TFBS_HSA
X	7376799	X_7376799_SNP [dm3] X_7482766_SNP [dm6]	C	T	2.292e^-4	0.61	INTERGENIC
2R	6452773	2R_6452773_SNP [dm3] 2R_10565268_SNP [dm6]	G	A	2.296e^-4	0.61	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
X	19340985	X_19340985_SNP [dm3] X_19446952_SNP [dm6]	T	C	2.298e^-4	0.61	INTRON kek5
X	14721030	X_14721030_SNP [dm3] X_14826997_SNP [dm6]	T	C	2.304e^-4	0.61	UTR_3_PRIME CG14408 UPSTREAM rut DOWNSTREAM CG14408	TF binding site mE1_TFBS_HSA
3L	7420956	3L_7420956_SNP [dm3] 3L_7427856_SNP [dm6]	G	C	2.313e^-4	0.61	INTRON CG42458
2L	2804474	2L_2804474_SNP [dm3] 2L_2804474_SNP [dm6]	C	A	2.319e^-4	0.61	UPSTREAM daw INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12191332	3R_12191332_SNP [dm3] 3R_16365610_SNP [dm6]	G	A	2.322e^-4	0.61	START_GAINED CG14880 UTR_5_PRIME CG14880	regulatory region REDfly_CRMs
2L	1289833	2L_1289833_SNP [dm3] 2L_1289833_SNP [dm6]	G	T	2.322e^-4	0.61	INTRON robo3
3L	21680507	3L_21680507_SNP [dm3] 3L_21687407_SNP [dm6]	T	C	2.330e^-4	0.61	INTERGENIC
X	2390294	X_2390294_SNP [dm3] X_2496261_SNP [dm6]	A	C	2.332e^-4	0.61	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8156303	3R_8156303_SNP [dm3] 3R_12330581_SNP [dm6]	T	A	2.333e^-4	0.61	DOWNSTREAM CR45583 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	19966252	3L_19966252_SNP [dm3] 3L_19973152_SNP [dm6]	T	C	2.335e^-4	0.61	INTRON Ac76E
2L	466416	2L_466416_SNP [dm3] 2L_466416_SNP [dm6]	A	G	2.336e^-4	0.61	INTRON CG4297
2L	9881957	2L_9881957_SNP [dm3] 2L_9881957_SNP [dm6]	A	C	2.338e^-4	0.61	INTRON nAChRalpha6
X	3539973	X_3539973_SNP [dm3] X_3645940_SNP [dm6]	T	C	2.344e^-4	0.61	INTRON AstA-R1
2L	21014272	2L_21014272_SNP [dm3] 2L_21014272_SNP [dm6]	G	T	2.345e^-4	0.61	INTRON CG42238
2L	15736188	2L_15736188_SNP [dm3] 2L_15736188_SNP [dm6]	G	C	2.345e^-4	0.61	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19703610	X_19703610_SNP [dm3] X_19809577_SNP [dm6]	G	C	2.348e^-4	0.61	INTERGENIC
2R	20297531	2R_20297531_SNP [dm3] 2R_24410008_SNP [dm6]	G	A	2.348e^-4	0.61	INTRON SerT	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	1289815	2L_1289815_INS [dm3] 2L_1289815_INS [dm6]	G	GT	2.351e^-4	0.61	INTRON robo3
3L	15907749	3L_15907749_SNP [dm3] 3L_15914649_SNP [dm6]	C	G	2.354e^-4	0.61	INTRON sff
X	8590249	X_8590249_SNP [dm3] X_8696216_SNP [dm6]	C	T	2.360e^-4	0.61	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12089204	3R_12089204_SNP [dm3] 3R_16263482_SNP [dm6]	G	A	2.366e^-4	0.61	SYNONYMOUS_CODING bor UPSTREAM asun	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	9675123	2L_9675123_SNP [dm3] 2L_9675123_SNP [dm6]	A	G	2.368e^-4	0.61	INTERGENIC
2L	2502115	2L_2502115_SNP [dm3] 2L_2502115_SNP [dm6]	G	A	2.378e^-4	0.61	INTERGENIC
3R	5013634	3R_5013634_SNP [dm3] 3R_9187912_SNP [dm6]	A	T	2.378e^-4	0.61	INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6492101	2R_6492101_SNP [dm3] 2R_10604596_SNP [dm6]	G	A	2.378e^-4	0.61	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	11855072	2R_11855072_SNP [dm3] 2R_15967567_SNP [dm6]	T	C	2.380e^-4	0.61	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
X	2484430	X_2484430_SNP [dm3] X_2590397_SNP [dm6]	A	G	2.386e^-4	0.61	INTRON egh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18516551	2R_18516551_SNP [dm3] 2R_22629046_SNP [dm6]	A	T	2.390e^-4	0.61	INTRON CG33143
2L	5524972	2L_5524972_SNP [dm3] 2L_5524972_SNP [dm6]	C	T	2.404e^-4	0.61	NON_SYNONYMOUS_CODING CG6907 UPSTREAM Cap-D3 DOWNSTREAM CR44793	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14242886	2R_14242886_SNP [dm3] 2R_18355381_SNP [dm6]	A	G	2.404e^-4	0.61	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	22096368	2L_22096368_SNP [dm3] 2L_22096368_SNP [dm6]	A	T	2.405e^-4	0.61	INTERGENIC
3L	4790980	3L_4790980_SNP [dm3] 3L_4790980_SNP [dm6]	G	T	2.405e^-4	0.61	SYNONYMOUS_CODING RhoGEF64C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9724641	2L_9724641_DEL [dm3] 2L_9724641_DEL [dm6]	GATGG	G	2.408e^-4	0.61	INTRON Nckx30C
2L	19600840	2L_19600840_SNP [dm3] 2L_19600840_SNP [dm6]	C	A	2.411e^-4	0.61	INTRON Lar & 1 other
2R	13329140	2R_13329140_SNP [dm3] 2R_17441635_SNP [dm6]	G	T	2.417e^-4	0.61	INTRON EDTP & 1 other
X	16709452	X_16709452_SNP [dm3] X_16815419_SNP [dm6]	A	T	2.421e^-4	0.61	DOWNSTREAM CR44129 INTRON CG4829
3R	4807200	3R_4807200_SNP [dm3] 3R_8981478_SNP [dm6]	A	G	2.423e^-4	0.61	INTRON CAHbeta	TF binding site mE1_TFBS_Trl
2R	20217809	2R_20217809_SNP [dm3] 2R_24330286_SNP [dm6]	G	A	2.425e^-4	0.61	DOWNSTREAM CR44810 INTERGENIC	TF binding site mE1_TFBS_Trl
X	2349883	X_2349883_INS [dm3] X_2455850_INS [dm6]	G	GAGAGACAACAGGAGCGCTG...	2.438e^-4	0.61	INTRON boi
2L	13922389	2L_13922389_SNP [dm3] 2L_13922389_SNP [dm6]	G	A	2.440e^-4	0.61	SYNONYMOUS_CODING CG16886 INTRON Ance-3	TF binding site mE1_TFBS_cad
3L	14104144	3L_14104144_SNP [dm3] 3L_14111044_SNP [dm6]	A	T	2.440e^-4	0.61	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	488456	2L_488456_SNP [dm3] 2L_488456_SNP [dm6]	A	T	2.441e^-4	0.61	INTRON ush	TF binding site mE1_TFBS_Trl
2R	19036487	2R_19036487_SNP [dm3] 2R_23148964_SNP [dm6]	T	A	2.442e^-4	0.61	INTERGENIC
2R	10570157	2R_10570157_SNP [dm3] 2R_14682652_SNP [dm6]	A	C	2.443e^-4	0.61	INTRON mspo
3R	19303923	3R_19303923_SNP [dm3] 3R_23478201_SNP [dm6]	T	G	2.450e^-4	0.61	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	6492159	2R_6492159_SNP [dm3] 2R_10604654_SNP [dm6]	G	A	2.450e^-4	0.61	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	492643	2L_492643_SNP [dm3] 2L_492643_SNP [dm6]	C	T	2.453e^-4	0.61	INTRON ush	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	13345650	3L_13345650_SNP [dm3] 3L_13352550_SNP [dm6]	G	A	2.453e^-4	0.61	SYNONYMOUS_CODING CG17687
3R	885287	3R_885287_SNP [dm3] 3R_5059565_SNP [dm6]	G	C	2.455e^-4	0.61	INTERGENIC
X	12222633	X_12222633_SNP [dm3] X_12328600_SNP [dm6]	G	A	2.456e^-4	0.61	SYNONYMOUS_CODING Ten-a	TF binding site mE1_TFBS_chinmo
3R	8137028	3R_8137028_SNP [dm3] 3R_12311306_SNP [dm6]	A	G	2.457e^-4	0.61	UPSTREAM CG4066 INTERGENIC
3R	25638474	3R_25638474_SNP [dm3] 3R_29812752_SNP [dm6]	A	C	2.460e^-4	0.61	SYNONYMOUS_CODING ca	TF binding site mE1_TFBS_chinmo
3L	4160560	3L_4160560_SNP [dm3] 3L_4160560_SNP [dm6]	G	A	2.460e^-4	0.61	SYNONYMOUS_CODING nab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
2L	5796463	2L_5796463_SNP [dm3] 2L_5796463_SNP [dm6]	C	T	2.464e^-4	0.61	INTRON CG9171
2L	16247861	2L_16247861_SNP [dm3] 2L_16247861_SNP [dm6]	A	T	2.469e^-4	0.61	INTRON PRL-1
3L	13667581	3L_13667581_SNP [dm3] 3L_13674481_SNP [dm6]	T	C	2.470e^-4	0.61	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14111647	2R_14111647_SNP [dm3] 2R_18224142_SNP [dm6]	C	T	2.478e^-4	0.611	INTERGENIC
3R	23199050	3R_23199050_SNP [dm3] 3R_27373328_SNP [dm6]	A	T	2.489e^-4	0.611	DOWNSTREAM CG42534 INTERGENIC
3L	20748903	3L_20748903_SNP [dm3] 3L_20755803_SNP [dm6]	T	G	2.495e^-4	0.611	UPSTREAM CG33912 INTERGENIC	TF binding site mE1_TFBS_inv
2L	10498751	2L_10498751_INS [dm3] 2L_10498751_INS [dm6]	A	GTTG	2.496e^-4	0.611	INTRON Myo31DF
2L	492605	2L_492605_SNP [dm3] 2L_492605_SNP [dm6]	C	A	2.496e^-4	0.611	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	8139383	2L_8139383_SNP [dm3] 2L_8139383_SNP [dm6]	G	C	2.496e^-4	0.611	NON_SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
3R	3267809	3R_3267809_SNP [dm3] 3R_7442087_SNP [dm6]	A	G	2.499e^-4	0.611	DOWNSTREAM CG14598 INTERGENIC
2L	13140328	2L_13140328_DEL [dm3] 2L_13140328_DEL [dm6]	AGGGG	C	2.506e^-4	0.611	INTERGENIC
3L	13669506	3L_13669506_SNP [dm3] 3L_13676406_SNP [dm6]	G	A	2.507e^-4	0.611	INTRON bru-3	TF binding site mE1_TFBS_chinmo
3R	12191350	3R_12191350_SNP [dm3] 3R_16365628_SNP [dm6]	T	C	2.512e^-4	0.611	UTR_5_PRIME CG14880	regulatory region REDfly_CRMs
3R	19937073	3R_19937073_SNP [dm3] 3R_24111351_SNP [dm6]	T	A	2.514e^-4	0.611	SYNONYMOUS_CODING CG13605	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7552013	3L_7552013_SNP [dm3] 3L_7558913_SNP [dm6]	T	A	2.520e^-4	0.611	INTRON CG14837
2R	14617637	2R_14617637_SNP [dm3] 2R_18730132_SNP [dm6]	C	A	2.522e^-4	0.611	SYNONYMOUS_CODING List INTRON Hs3st-A
X	8437837	X_8437837_DEL [dm3] X_8543804_DEL [dm6]	CC	C	2.524e^-4	0.611	INTRON Nrg
2R	13953446	2R_13953446_SNP [dm3] 2R_18065941_SNP [dm6]	T	C	2.527e^-4	0.611	INTRON CG34386
3L	7640580	3L_7640580_SNP [dm3] 3L_7647480_SNP [dm6]	G	A	2.530e^-4	0.611	INTERGENIC
3R	8173333	3R_8173333_SNP [dm3] 3R_12347611_SNP [dm6]	T	A	2.532e^-4	0.611	INTERGENIC
2L	13123062	2L_13123062_SNP [dm3] 2L_13123062_SNP [dm6]	T	A	2.536e^-4	0.611	INTERGENIC
3R	9741081	3R_9741081_SNP [dm3] 3R_13915359_SNP [dm6]	T	A	2.543e^-4	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14762164	X_14762164_SNP [dm3] X_14868131_SNP [dm6]	A	G	2.548e^-4	0.611	INTRON Flo2 & 1 other
2L	19161257	2L_19161257_SNP [dm3] 2L_19161257_SNP [dm6]	G	A	2.553e^-4	0.611	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	18037938	2R_18037938_SNP [dm3] 2R_22150433_SNP [dm6]	A	G	2.557e^-4	0.611	INTRON a
3R	10059858	3R_10059858_SNP [dm3] 3R_14234136_SNP [dm6]	A	G	2.557e^-4	0.611	INTERGENIC
2L	6248476	2L_6248476_SNP [dm3] 2L_6248476_SNP [dm6]	C	T	2.560e^-4	0.611	INTERGENIC
3R	25909570	3R_25909570_SNP [dm3] 3R_30083848_SNP [dm6]	C	G	2.565e^-4	0.611	INTRON sima	TF binding site mE1_TFBS_Trl
3L	9291754	3L_9291754_SNP [dm3] 3L_9298654_SNP [dm6]	G	C	2.568e^-4	0.611	INTERGENIC
X	9530780	X_9530780_SNP [dm3] X_9636747_SNP [dm6]	A	T	2.569e^-4	0.611	INTRON l_1_G0232
2R	14119993	2R_14119993_SNP [dm3] 2R_18232488_SNP [dm6]	T	A	2.572e^-4	0.611	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	18079995	X_18079995_SNP [dm3] X_18185962_SNP [dm6]	G	A	2.572e^-4	0.611	UPSTREAM Frq2 INTRON Frq2
2L	14262588	2L_14262588_SNP [dm3] 2L_14262588_SNP [dm6]	G	A	2.578e^-4	0.612	UPSTREAM wb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	27004987	3R_27004987_SNP [dm3] 3R_31179265_SNP [dm6]	G	T	2.583e^-4	0.612	DOWNSTREAM Gycbeta100B & 1 other INTRON mesh
X	7373788	X_7373788_SNP [dm3] X_7479755_SNP [dm6]	T	C	2.585e^-4	0.612	INTERGENIC
2L	2234551	2L_2234551_SNP [dm3] 2L_2234551_SNP [dm6]	C	T	2.601e^-4	0.614	SYNONYMOUS_CODING Sec24CD
3R	14051423	3R_14051423_SNP [dm3] 3R_18225701_SNP [dm6]	A	T	2.601e^-4	0.614	UPSTREAM Mdh2 DOWNSTREAM CG7993 INTRON CG7168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9452027	2R_9452027_SNP [dm3] 2R_13564522_SNP [dm6]	T	A	2.602e^-4	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	15061647	3L_15061647_SNP [dm3] 3L_15068547_SNP [dm6]	C	A	2.605e^-4	0.614	SYNONYMOUS_CODING cp309	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	2402449	2R_2402449_SNP [dm3] 2R_6514944_SNP [dm6]	G	T	2.614e^-4	0.615	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15115377	3L_15115377_SNP [dm3] 3L_15122277_SNP [dm6]	A	T	2.628e^-4	0.617	UTR_3_PRIME CG32847 INTRON Cep135 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	25904671	3R_25904671_SNP [dm3] 3R_30078949_SNP [dm6]	G	A	2.633e^-4	0.617	INTRON sima
2R	5931673	2R_5931673_SNP [dm3] 2R_10044168_SNP [dm6]	A	G	2.639e^-4	0.617	UPSTREAM CG34220 INTRON oys EXON CR44295
3L	10357279	3L_10357279_SNP [dm3] 3L_10364179_SNP [dm6]	A	C	2.645e^-4	0.617	UPSTREAM CR44327 EXON CR44327	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6373723	2R_6373723_SNP [dm3] 2R_10486218_SNP [dm6]	G	C	2.649e^-4	0.617	UPSTREAM pre-lola-G INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1585074	2L_1585074_SNP [dm3] 2L_1585074_SNP [dm6]	G	A	2.651e^-4	0.617	SYNONYMOUS_CODING CG10869 INTRON haf
2R	19763286	2R_19763286_SNP [dm3] 2R_23875763_SNP [dm6]	T	C	2.657e^-4	0.617	SYNONYMOUS_CODING ken	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10239588	2R_10239588_DEL [dm3] 2R_14352083_DEL [dm6]	AA	A	2.659e^-4	0.617	UPSTREAM CG8613 DOWNSTREAM Shroom INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
2R	14372243	2R_14372243_SNP [dm3] 2R_18484738_SNP [dm6]	A	T	2.669e^-4	0.617	INTRON CG30116
2L	8331508	2L_8331508_SNP [dm3] 2L_8331508_SNP [dm6]	T	C	2.677e^-4	0.617	INTRON CG14275
X	16587559	X_16587559_INS [dm3] X_16693526_INS [dm6]	T	TAT	2.679e^-4	0.617	INTRON Sep4
2R	9741978	2R_9741978_SNP [dm3] 2R_13854473_SNP [dm6]	A	T	2.680e^-4	0.617	UPSTREAM CR44367 & 1 other DOWNSTREAM CG6553 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	9742086	2R_9742086_SNP [dm3] 2R_13854581_SNP [dm6]	A	T	2.680e^-4	0.617	UTR_3_PRIME CG6553 UPSTREAM CR44367 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	7728390	2L_7728390_SNP [dm3] 2L_7728390_SNP [dm6]	A	G	2.685e^-4	0.617	SYNONYMOUS_CODING CG13796
3R	23121374	3R_23121374_SNP [dm3] 3R_27295652_SNP [dm6]	C	A	2.687e^-4	0.617	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5136633	2R_5136633_SNP [dm3] 2R_9249128_SNP [dm6]	T	C	2.690e^-4	0.617	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13326025	X_13326025_SNP [dm3] X_13431992_SNP [dm6]	C	G	2.691e^-4	0.617	INTERGENIC
3L	6349520	3L_6349520_SNP [dm3] 3L_6356420_SNP [dm6]	G	T	2.695e^-4	0.617	INTERGENIC
2L	9773609	2L_9773609_SNP [dm3] 2L_9773609_SNP [dm6]	T	A	2.700e^-4	0.617	UPSTREAM ppk16 INTRON ppk11
2L	12804984	2L_12804984_SNP [dm3] 2L_12804984_SNP [dm6]	A	G	2.702e^-4	0.617	INTERGENIC
2R	10785678	2R_10785678_SNP [dm3] 2R_14898173_SNP [dm6]	C	A	2.703e^-4	0.617	UPSTREAM Cyp317a1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	20232328	2L_20232328_SNP [dm3] 2L_20232328_SNP [dm6]	T	C	2.703e^-4	0.617	INTERGENIC
2R	6956084	2R_6956084_SNP [dm3] 2R_11068579_SNP [dm6]	C	T	2.703e^-4	0.617	INTRON luna
2L	437247	2L_437247_SNP [dm3] 2L_437247_SNP [dm6]	T	G	2.703e^-4	0.617	INTRON ex
3R	17874237	3R_17874237_SNP [dm3] 3R_22048515_SNP [dm6]	T	A	2.706e^-4	0.617	INTRON how	TF binding site BDTNP1_TFBS_twi
2R	7429508	2R_7429508_SNP [dm3] 2R_11542003_SNP [dm6]	A	T	2.717e^-4	0.618	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16466944	2R_16466944_SNP [dm3] 2R_20579439_SNP [dm6]	A	G	2.718e^-4	0.618	INTRON qsm
2L	16042004	2L_16042004_SNP [dm3] 2L_16042004_SNP [dm6]	T	G	2.720e^-4	0.618	UPSTREAM BicC & 1 other DOWNSTREAM beat-Ic INTERGENIC
2R	1574703	2R_1574703_SNP [dm3] 2R_5687198_SNP [dm6]	C	T	2.727e^-4	0.619	INTRON scaf
3R	901389	3R_901389_SNP [dm3] 3R_5075667_SNP [dm6]	C	T	2.729e^-4	0.619	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
3R	1821526	3R_1821526_SNP [dm3] 3R_5995804_SNP [dm6]	T	C	2.735e^-4	0.62	EXON CR44928
3L	11158929	3L_11158929_SNP [dm3] 3L_11165829_SNP [dm6]	T	C	2.742e^-4	0.62	SYNONYMOUS_CODING Alg10 DOWNSTREAM wls	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	464390	2L_464390_SNP [dm3] 2L_464390_SNP [dm6]	G	C	2.742e^-4	0.62	NON_SYNONYMOUS_CODING CG4297	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5784927	3L_5784927_SNP [dm3] 3L_5791827_SNP [dm6]	G	A	2.748e^-4	0.62	SYNONYMOUS_CODING Bre1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4763743	X_4763743_SNP [dm3] X_4869710_SNP [dm6]	A	T	2.748e^-4	0.62	INTRON CG42594	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7423508	2R_7423508_SNP [dm3] 2R_11536003_SNP [dm6]	G	A	2.762e^-4	0.622	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	493080	3L_493080_SNP [dm3] 3L_493080_SNP [dm6]	T	A	2.777e^-4	0.623	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17981926	3R_17981926_SNP [dm3] 3R_22156204_SNP [dm6]	C	A	2.778e^-4	0.623	INTRON SKIP
2L	2231117	2L_2231117_SNP [dm3] 2L_2231117_SNP [dm6]	G	A	2.781e^-4	0.623	UTR_3_PRIME Sec24CD DOWNSTREAM rti & 1 other
2L	13908000	2L_13908000_SNP [dm3] 2L_13908000_SNP [dm6]	C	T	2.787e^-4	0.623	INTRON Ance	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	480968	2L_480968_SNP [dm3] 2L_480968_SNP [dm6]	G	A	2.791e^-4	0.623	INTRON ush	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	1314383	2L_1314383_SNP [dm3] 2L_1314383_SNP [dm6]	G	C	2.795e^-4	0.623	INTERGENIC
X	3477897	X_3477897_SNP [dm3] X_3583864_SNP [dm6]	C	G	2.796e^-4	0.623	INTRON AstA-R1
2L	6019892	2L_6019892_SNP [dm3] 2L_6019892_SNP [dm6]	G	A	2.801e^-4	0.623	UPSTREAM H2.0 & 1 other INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10504662	3R_10504662_SNP [dm3] 3R_14678940_SNP [dm6]	G	A	2.804e^-4	0.623	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	21039797	2L_21039797_SNP [dm3] 2L_21039797_SNP [dm6]	A	T	2.807e^-4	0.623	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	5410634	3L_5410634_SNP [dm3] 3L_5417534_SNP [dm6]	G	T	2.808e^-4	0.623	INTERGENIC
X	7373184	X_7373184_SNP [dm3] X_7479151_SNP [dm6]	C	G	2.811e^-4	0.623	INTERGENIC
X	12655469	X_12655469_SNP [dm3] X_12761436_SNP [dm6]	A	T	2.815e^-4	0.623	SYNONYMOUS_CODING CG12717 UPSTREAM ade5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18517890	2R_18517890_SNP [dm3] 2R_22630385_SNP [dm6]	T	G	2.817e^-4	0.623	NON_SYNONYMOUS_CODING CG33143 INTRON CG33143	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13094856	2L_13094856_SNP [dm3] 2L_13094856_SNP [dm6]	T	C	2.822e^-4	0.623	INTERGENIC
3L	12647658	3L_12647658_INS [dm3] 3L_12654558_INS [dm6]	T	TT	2.828e^-4	0.623	INTERGENIC
3R	12330164	3R_12330164_SNP [dm3] 3R_16504442_SNP [dm6]	C	T	2.834e^-4	0.623	INTRON CG42342
2R	6642194	2R_6642194_SNP [dm3] 2R_10754689_SNP [dm6]	G	A	2.836e^-4	0.623	INTRON CG33144
2L	16071060	2L_16071060_SNP [dm3] 2L_16071060_SNP [dm6]	T	A	2.836e^-4	0.623	INTRON beat-Ia
X	8657661	X_8657661_SNP [dm3] X_8763628_SNP [dm6]	C	A	2.845e^-4	0.623	INTRON Lim1	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	17396749	2R_17396749_SNP [dm3] 2R_21509244_SNP [dm6]	T	C	2.845e^-4	0.623	INTRON MESK2
2L	17790314	2L_17790314_SNP [dm3] 2L_17790314_SNP [dm6]	T	G	2.848e^-4	0.623	INTRON CadN2
X	6534899	X_6534899_SNP [dm3] X_6640866_SNP [dm6]	T	C	2.853e^-4	0.623	INTRON pigs
X	4807883	X_4807883_SNP [dm3] X_4913850_SNP [dm6]	G	A	2.855e^-4	0.623	SYNONYMOUS_CODING CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15065967	2R_15065967_SNP [dm3] 2R_19178462_SNP [dm6]	A	T	2.858e^-4	0.623	UPSTREAM hppy DOWNSTREAM CG10737 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	10061086	2L_10061086_SNP [dm3] 2L_10061086_SNP [dm6]	A	G	2.858e^-4	0.623	DOWNSTREAM Pen INTRON Spn31A
2L	4196838	2L_4196838_SNP [dm3] 2L_4196838_SNP [dm6]	T	A	2.859e^-4	0.623	INTRON CG3714	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2R	11447079	2R_11447079_SNP [dm3] 2R_15559574_SNP [dm6]	T	C	2.861e^-4	0.623	SYNONYMOUS_CODING CG12963 UPSTREAM CG12963 INTRON CG12963	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8663582	X_8663582_SNP [dm3] X_8769549_SNP [dm6]	C	T	2.865e^-4	0.623	INTRON Lim1	TF binding site BDTNP1_TFBS_twi
X	7373779	X_7373779_SNP [dm3] X_7479746_SNP [dm6]	C	T	2.867e^-4	0.623	INTERGENIC
X	3862346	X_3862346_SNP [dm3] X_3968313_SNP [dm6]	G	A	2.871e^-4	0.623	UTR_5_PRIME CG6428 UPSTREAM CR45481 DOWNSTREAM CG6414	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	10941155	3R_10941155_SNP [dm3] 3R_15115433_SNP [dm6]	G	A	2.874e^-4	0.623	INTRON CG42788
X	8357061	X_8357061_SNP [dm3] X_8463028_SNP [dm6]	G	C	2.894e^-4	0.624	NON_SYNONYMOUS_CODING Es2 DOWNSTREAM Sptr	TF binding site mE1_TFBS_cad
2L	1190369	2L_1190369_SNP [dm3] 2L_1190369_SNP [dm6]	C	A	2.894e^-4	0.624	INTRON CG5001
3R	17028484	3R_17028484_SNP [dm3] 3R_21202762_SNP [dm6]	T	G	2.896e^-4	0.624	INTRON SNF4Agamma
2L	21003924	2L_21003924_SNP [dm3] 2L_21003924_SNP [dm6]	G	A	2.903e^-4	0.624	INTRON CG42238	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2R	10239630	2R_10239630_INS [dm3] 2R_14352125_INS [dm6]	A	AA	2.903e^-4	0.624	UPSTREAM CG8613 DOWNSTREAM Shroom INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
2L	12441389	2L_12441389_SNP [dm3] 2L_12441389_SNP [dm6]	A	G	2.906e^-4	0.624	DOWNSTREAM Oatp33Ea & 1 other INTERGENIC
2L	9847564	2L_9847564_SNP [dm3] 2L_9847564_SNP [dm6]	T	C	2.907e^-4	0.624	UPSTREAM CR43766 INTRON nAChRalpha6
2R	10785673	2R_10785673_SNP [dm3] 2R_14898168_SNP [dm6]	G	T	2.908e^-4	0.624	UPSTREAM Cyp317a1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11153854	3L_11153854_SNP [dm3] 3L_11160754_SNP [dm6]	C	G	2.909e^-4	0.624	INTRON CG32082
2L	12144800	2L_12144800_SNP [dm3] 2L_12144800_SNP [dm6]	G	A	2.910e^-4	0.624	UPSTREAM CG31760 INTRON CG31760
2L	9191988	2L_9191988_SNP [dm3] 2L_9191988_SNP [dm6]	A	T	2.934e^-4	0.624	INTRON tai
2R	19366143	2R_19366143_SNP [dm3] 2R_23478620_SNP [dm6]	G	C	2.936e^-4	0.624	INTRON CG43795
X	19597685	X_19597685_SNP [dm3] X_19703652_SNP [dm6]	C	T	2.939e^-4	0.624	SYNONYMOUS_CODING CG14232 UPSTREAM CG14230	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7122379	3L_7122379_SNP [dm3] 3L_7129279_SNP [dm6]	T	C	2.939e^-4	0.624	UTR_3_PRIME CG15829
3R	12191348	3R_12191348_SNP [dm3] 3R_16365626_SNP [dm6]	A	T	2.943e^-4	0.624	UTR_5_PRIME CG14880	regulatory region REDfly_CRMs
2L	6750578	2L_6750578_SNP [dm3] 2L_6750578_SNP [dm6]	C	A	2.943e^-4	0.624	INTRON CG11221
2R	8950127	2R_8950127_SNP [dm3] 2R_13062622_SNP [dm6]	A	G	2.948e^-4	0.624	INTRON Drl-2
2L	5789083	2L_5789083_SNP [dm3] 2L_5789083_SNP [dm6]	T	C	2.951e^-4	0.624	INTRON CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11568766	3R_11568766_SNP [dm3] 3R_15743044_SNP [dm6]	A	G	2.952e^-4	0.624	INTERGENIC
2R	18858321	2R_18858321_SNP [dm3] 2R_22970798_SNP [dm6]	A	C	2.967e^-4	0.624	INTERGENIC
2L	10717978	2L_10717978_SNP [dm3] 2L_10717978_SNP [dm6]	T	G	2.968e^-4	0.624	INTERGENIC
2L	8664324	2L_8664324_SNP [dm3] 2L_8664324_SNP [dm6]	T	C	2.976e^-4	0.624	INTRON Sema-1a	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14262515	2L_14262515_SNP [dm3] 2L_14262515_SNP [dm6]	C	T	2.978e^-4	0.624	UPSTREAM wb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	10173631	2L_10173631_SNP [dm3] 2L_10173631_SNP [dm6]	G	A	2.980e^-4	0.624	NON_SYNONYMOUS_CODING CG13137 INTRON CG44153	TF binding site mE1_TFBS_cad
3L	4986033	3L_4986033_SNP [dm3] 3L_4986033_SNP [dm6]	A	G	2.982e^-4	0.624	INTRON Con
3R	11789379	3R_11789379_SNP [dm3] 3R_15963657_SNP [dm6]	T	C	2.984e^-4	0.624	UTR_5_PRIME CG4287 UPSTREAM CG5516	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12045743	3L_12045743_SNP [dm3] 3L_12052643_SNP [dm6]	A	G	2.984e^-4	0.624	INTRON rols	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	12045754	3L_12045754_SNP [dm3] 3L_12052654_SNP [dm6]	C	T	2.984e^-4	0.624	INTRON rols	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	15298482	3R_15298482_SNP [dm3] 3R_19472760_SNP [dm6]	C	A	2.995e^-4	0.624	INTRON Dys	TF binding site mE1_TFBS_cad
3R	3223682	3R_3223682_SNP [dm3] 3R_7397960_SNP [dm6]	C	T	2.996e^-4	0.624	INTERGENIC
3R	25065997	3R_25065997_SNP [dm3] 3R_29240275_SNP [dm6]	G	T	2.997e^-4	0.624	UTR_5_PRIME CG31427 DOWNSTREAM CG31445 INTRON CG31427
3L	15901798	3L_15901798_SNP [dm3] 3L_15908698_SNP [dm6]	C	T	2.999e^-4	0.624	INTRON sff
2R	15278643	2R_15278643_SNP [dm3] 2R_19391138_SNP [dm6]	C	T	3.000e^-4	0.624	SYNONYMOUS_CODING CG11257 DOWNSTREAM SdhA	TF binding site mE1_TFBS_sens
2L	20115145	2L_20115145_SNP [dm3] 2L_20115145_SNP [dm6]	G	C	3.001e^-4	0.624	INTERGENIC
3R	26526089	3R_26526089_SNP [dm3] 3R_30700367_SNP [dm6]	T	A	3.001e^-4	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8605667	X_8605667_SNP [dm3] X_8711634_SNP [dm6]	T	G	3.006e^-4	0.624	SYNONYMOUS_CODING Hexo2 DOWNSTREAM CG2004	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7662346	2R_7662346_SNP [dm3] 2R_11774841_SNP [dm6]	G	T	3.007e^-4	0.624	INTRON ths
2L	16071337	2L_16071337_SNP [dm3] 2L_16071337_SNP [dm6]	G	A	3.008e^-4	0.624	INTRON beat-Ia
2R	13297390	2R_13297390_SNP [dm3] 2R_17409885_SNP [dm6]	A	G	3.012e^-4	0.624	SYNONYMOUS_CODING CG30101
X	2811173	X_2811173_SNP [dm3] X_2917140_SNP [dm6]	C	A	3.016e^-4	0.624	INTRON kirre
3L	21052124	3L_21052124_INS [dm3] 3L_21059024_INS [dm6]	A	AA	3.017e^-4	0.624	UTR_5_PRIME siz INTRON siz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10498696	2L_10498696_SNP [dm3] 2L_10498696_SNP [dm6]	C	T	3.020e^-4	0.624	INTRON Myo31DF
3L	8879747	3L_8879747_SNP [dm3] 3L_8886647_SNP [dm6]	C	T	3.024e^-4	0.624	SYNONYMOUS_CODING dally
3L	12605086	3L_12605086_SNP [dm3] 3L_12611986_SNP [dm6]	C	T	3.025e^-4	0.624	INTRON caup
3R	23587244	3R_23587244_SNP [dm3] 3R_27761522_SNP [dm6]	G	C	3.030e^-4	0.624	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	3235830	3R_3235830_SNP [dm3] 3R_7410108_SNP [dm6]	C	G	3.033e^-4	0.624	DOWNSTREAM Ir84a INTERGENIC
3L	11180641	3L_11180641_SNP [dm3] 3L_11187541_SNP [dm6]	A	T	3.047e^-4	0.625	INTRON GlcAT-P
3R	22508874	3R_22508874_SNP [dm3] 3R_26683152_SNP [dm6]	C	T	3.050e^-4	0.625	INTERGENIC
3L	838014	3L_838014_SNP [dm3] 3L_838014_SNP [dm6]	C	A	3.051e^-4	0.625	UTR_5_PRIME CG13887 UPSTREAM CG13901 INTRON CG13887	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	18296884	2R_18296884_SNP [dm3] 2R_22409379_SNP [dm6]	G	C	3.052e^-4	0.625	UTR_3_PRIME qkr58E-3 DOWNSTREAM qkr58E-3 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1289820	2L_1289820_SNP [dm3] 2L_1289820_SNP [dm6]	G	A	3.057e^-4	0.625	INTRON robo3
3L	7551952	3L_7551952_SNP [dm3] 3L_7558852_SNP [dm6]	A	T	3.059e^-4	0.625	INTRON CG14837
3R	16942271	3R_16942271_SNP [dm3] 3R_21116549_SNP [dm6]	G	C	3.060e^-4	0.625	SYNONYMOUS_CODING ppan DOWNSTREAM Rab11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20990449	2L_20990449_SNP [dm3] 2L_20990449_SNP [dm6]	C	T	3.062e^-4	0.625	INTRON CG42238
3R	4807245	3R_4807245_SNP [dm3] 3R_8981523_SNP [dm6]	G	A	3.064e^-4	0.625	INTRON CAHbeta	TF binding site mE1_TFBS_Trl
3L	7559256	3L_7559256_SNP [dm3] 3L_7566156_SNP [dm6]	A	T	3.067e^-4	0.625	SYNONYMOUS_CODING frac	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	5097367	2R_5097367_SNP [dm3] 2R_9209862_SNP [dm6]	T	C	3.078e^-4	0.625	DOWNSTREAM VhaAC45 INTERGENIC
3L	4164984	3L_4164984_SNP [dm3] 3L_4164984_SNP [dm6]	C	G	3.080e^-4	0.625	NON_SYNONYMOUS_CODING mas
2R	9450584	2R_9450584_SNP [dm3] 2R_13563079_SNP [dm6]	T	C	3.084e^-4	0.625	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	4986159	3L_4986159_SNP [dm3] 3L_4986159_SNP [dm6]	C	G	3.085e^-4	0.625	INTRON Con
X	3530846	X_3530846_SNP [dm3] X_3636813_SNP [dm6]	T	A	3.086e^-4	0.625	INTRON AstA-R1
3L	7556087	3L_7556087_SNP [dm3] 3L_7562987_SNP [dm6]	T	G	3.106e^-4	0.625	START_GAINED frac UTR_5_PRIME frac INTRON frac	TF binding site BDTNP1_TFBS_twi
2R	15479761	2R_15479761_SNP [dm3] 2R_19592256_SNP [dm6]	A	G	3.112e^-4	0.625	INTRON sm
2R	9451463	2R_9451463_SNP [dm3] 2R_13563958_SNP [dm6]	C	T	3.113e^-4	0.625	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
2R	9229832	2R_9229832_MNP [dm3] 2R_13342327_MNP [dm6]	GGT	ATA	3.115e^-4	0.625	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	17670867	X_17670867_SNP [dm3] X_17776834_SNP [dm6]	C	T	3.115e^-4	0.625	INTRON unc-4
2L	4209788	2L_4209788_SNP [dm3] 2L_4209788_SNP [dm6]	A	C	3.119e^-4	0.625	INTRON ft	TF binding site mE1_TFBS_inv
2L	5784524	2L_5784524_SNP [dm3] 2L_5784524_SNP [dm6]	G	A	3.127e^-4	0.625	SYNONYMOUS_CODING CG31913 INTRON CG9171	TF binding site mE1_TFBS_chinmo
3R	21129344	3R_21129344_SNP [dm3] 3R_25303622_SNP [dm6]	G	C	3.135e^-4	0.625	SYNONYMOUS_CODING CG31370 UPSTREAM CG31436
2L	13053931	2L_13053931_SNP [dm3] 2L_13053931_SNP [dm6]	T	C	3.136e^-4	0.625	INTRON CG9932
3L	8877374	3L_8877374_SNP [dm3] 3L_8884274_SNP [dm6]	G	T	3.141e^-4	0.625	INTRON dally
3R	24203548	3R_24203548_SNP [dm3] 3R_28377826_SNP [dm6]	A	T	3.142e^-4	0.625	INTERGENIC
2R	9229809	2R_9229809_SNP [dm3] 2R_13342304_SNP [dm6]	T	A	3.159e^-4	0.625	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9229812	2R_9229812_SNP [dm3] 2R_13342307_SNP [dm6]	G	A	3.159e^-4	0.625	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9229813	2R_9229813_SNP [dm3] 2R_13342308_SNP [dm6]	C	A	3.159e^-4	0.625	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9229814	2R_9229814_INS [dm3] 2R_13342309_INS [dm6]	C	CATATTA	3.159e^-4	0.625	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9229819	2R_9229819_MNP [dm3] 2R_13342314_MNP [dm6]	TGG	ATA	3.159e^-4	0.625	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9229824	2R_9229824_MNP [dm3] 2R_13342319_MNP [dm6]	GCT	ATA	3.159e^-4	0.625	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9229829	2R_9229829_SNP [dm3] 2R_13342324_SNP [dm6]	T	A	3.159e^-4	0.625	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9229830	2R_9229830_SNP [dm3] 2R_13342325_SNP [dm6]	C	T	3.159e^-4	0.625	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	7662415	2R_7662415_SNP [dm3] 2R_11774910_SNP [dm6]	A	C	3.161e^-4	0.625	INTRON ths
2L	10672098	2L_10672098_SNP [dm3] 2L_10672098_SNP [dm6]	A	G	3.168e^-4	0.625	DOWNSTREAM CG31871 INTERGENIC
X	7373660	X_7373660_DEL [dm3] X_7479627_DEL [dm6]	CTTAAC	C	3.173e^-4	0.625	INTERGENIC
3L	14363210	3L_14363210_SNP [dm3] 3L_14370110_SNP [dm6]	C	T	3.176e^-4	0.625	UPSTREAM CG13481 INTERGENIC
2L	6750560	2L_6750560_DEL [dm3] 2L_6750560_DEL [dm6]	TT	T	3.176e^-4	0.625	INTRON CG11221
2L	5776022	2L_5776022_SNP [dm3] 2L_5776022_SNP [dm6]	A	G	3.180e^-4	0.625	INTRON CG9171
2R	8920385	2R_8920385_SNP [dm3] 2R_13032880_SNP [dm6]	A	C	3.183e^-4	0.625	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	10351358	2L_10351358_SNP [dm3] 2L_10351358_SNP [dm6]	A	C	3.184e^-4	0.625	INTRON CG34367	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	4817823	3R_4817823_SNP [dm3] 3R_8992101_SNP [dm6]	G	A	3.188e^-4	0.625	NON_SYNONYMOUS_CODING E_var_3-9	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
3L	17598297	3L_17598297_SNP [dm3] 3L_17605197_SNP [dm6]	G	A	3.190e^-4	0.625	INTRON Eip74EF
2L	397274	2L_397274_SNP [dm3] 2L_397274_SNP [dm6]	C	T	3.193e^-4	0.625	SYNONYMOUS_CODING CG4213 DOWNSTREAM CR43718	TF binding site mE1_TFBS_cad
2L	6770049	2L_6770049_SNP [dm3] 2L_6770049_SNP [dm6]	T	C	3.196e^-4	0.625	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10184866	2L_10184866_SNP [dm3] 2L_10184866_SNP [dm6]	T	C	3.197e^-4	0.625	SYNONYMOUS_CODING Sur	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	7641233	3L_7641233_INS [dm3] 3L_7648133_INS [dm6]	T	ACA	3.197e^-4	0.625	INTERGENIC
3R	1793388	3R_1793388_SNP [dm3] 3R_5967666_SNP [dm6]	C	A	3.201e^-4	0.625	INTERGENIC
3R	4810104	3R_4810104_SNP [dm3] 3R_8984382_SNP [dm6]	A	T	3.202e^-4	0.625	UPSTREAM CG11970 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	19393718	X_19393718_SNP [dm3] X_19499685_SNP [dm6]	G	A	3.205e^-4	0.625	INTRON Pfrx & 1 other
3R	14718819	3R_14718819_SNP [dm3] 3R_18893097_SNP [dm6]	A	G	3.209e^-4	0.625	INTERGENIC
2R	7962348	2R_7962348_SNP [dm3] 2R_12074843_SNP [dm6]	G	C	3.210e^-4	0.625	INTRON CG8888
3L	14245817	3L_14245817_SNP [dm3] 3L_14252717_SNP [dm6]	G	T	3.222e^-4	0.626	INTERGENIC
2R	17132054	2R_17132054_SNP [dm3] 2R_21244549_SNP [dm6]	G	C	3.234e^-4	0.626	INTRON ASPP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10499147	2L_10499147_SNP [dm3] 2L_10499147_SNP [dm6]	A	G	3.236e^-4	0.626	INTRON Myo31DF
3L	14967415	3L_14967415_DEL [dm3] 3L_14974315_DEL [dm6]	CT	C	3.252e^-4	0.626	UPSTREAM Ocho INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	15477778	2R_15477778_SNP [dm3] 2R_19590273_SNP [dm6]	C	A	3.253e^-4	0.626	INTRON sm
X	21940609	X_21940609_SNP [dm3] X_22538773_SNP [dm6]	A	T	3.254e^-4	0.626	INTRON CG17600 & 1 other
2R	13329171	2R_13329171_DEL [dm3] 2R_17441666_DEL [dm6]	AA	A	3.255e^-4	0.626	INTRON EDTP & 1 other
2R	10993333	2R_10993333_SNP [dm3] 2R_15105828_SNP [dm6]	C	T	3.256e^-4	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19256010	2R_19256010_SNP [dm3] 2R_23368487_SNP [dm6]	G	C	3.262e^-4	0.626	NON_SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad
3L	14153749	3L_14153749_SNP [dm3] 3L_14160649_SNP [dm6]	T	C	3.266e^-4	0.626	INTERGENIC	regulatory region REDfly_CRMs
2L	16071338	2L_16071338_SNP [dm3] 2L_16071338_SNP [dm6]	T	C	3.272e^-4	0.626	INTRON beat-Ia
2L	20040584	2L_20040584_DEL [dm3] 2L_20040584_DEL [dm6]	GG	G	3.274e^-4	0.626	INTRON sNPF	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7662386	2R_7662386_SNP [dm3] 2R_11774881_SNP [dm6]	T	G	3.278e^-4	0.626	INTRON ths
3L	6349535	3L_6349535_DEL [dm3] 3L_6356435_DEL [dm6]	AT	C	3.280e^-4	0.626	INTERGENIC
2L	12441386	2L_12441386_DEL [dm3] 2L_12441386_DEL [dm6]	TA	G	3.280e^-4	0.626	DOWNSTREAM Oatp33Ea & 1 other INTERGENIC
2L	1296331	2L_1296331_SNP [dm3] 2L_1296331_SNP [dm6]	C	T	3.283e^-4	0.626	UTR_3_PRIME robo3
X	18918231	X_18918231_SNP [dm3] X_19024198_SNP [dm6]	G	A	3.286e^-4	0.626	INTRON CG43759
X	18361274	X_18361274_SNP [dm3] X_18467241_SNP [dm6]	T	C	3.286e^-4	0.626	INTRON CG32547
3L	13129605	3L_13129605_SNP [dm3] 3L_13136505_SNP [dm6]	C	A	3.290e^-4	0.626	SYNONYMOUS_CODING CG33262	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2234283	2L_2234283_SNP [dm3] 2L_2234283_SNP [dm6]	C	T	3.293e^-4	0.626	SYNONYMOUS_CODING Sec24CD
2R	6213425	2R_6213425_SNP [dm3] 2R_10325920_SNP [dm6]	C	A	3.296e^-4	0.626	INTRON CG42732
3R	11781453	3R_11781453_SNP [dm3] 3R_15955731_SNP [dm6]	C	T	3.296e^-4	0.626	INTRON Sap47
3L	1727903	3L_1727903_SNP [dm3] 3L_1727903_SNP [dm6]	G	A	3.301e^-4	0.626	INTRON drpr	TF binding site BDTNP1_TFBS_twi
X	6311282	X_6311282_SNP [dm3] X_6417249_SNP [dm6]	G	T	3.301e^-4	0.626	INTERGENIC
2L	2234464	2L_2234464_SNP [dm3] 2L_2234464_SNP [dm6]	C	T	3.303e^-4	0.626	SYNONYMOUS_CODING Sec24CD
3R	2357337	3R_2357337_INS [dm3] 3R_6531615_INS [dm6]	C	CGTC	3.304e^-4	0.626	UTR_3_PRIME dpr11
2L	8350551	2L_8350551_SNP [dm3] 2L_8350551_SNP [dm6]	A	C	3.322e^-4	0.626	UTR_3_PRIME CG7778 DOWNSTREAM CG7778	TF binding site mE1_TFBS_zfh1
3R	25909568	3R_25909568_SNP [dm3] 3R_30083846_SNP [dm6]	T	A	3.325e^-4	0.626	INTRON sima	TF binding site mE1_TFBS_Trl
3R	25168819	3R_25168819_SNP [dm3] 3R_29343097_SNP [dm6]	C	T	3.328e^-4	0.626	INTERGENIC
X	5700434	X_5700434_SNP [dm3] X_5806401_SNP [dm6]	G	T	3.332e^-4	0.626	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1781894	3R_1781894_SNP [dm3] 3R_5956172_SNP [dm6]	A	C	3.336e^-4	0.626	INTRON CG34113
2L	14262938	2L_14262938_SNP [dm3] 2L_14262938_SNP [dm6]	C	A	3.338e^-4	0.626	UPSTREAM wb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3R	9750700	3R_9750700_DEL [dm3] 3R_13924978_DEL [dm6]	TAA	T	3.341e^-4	0.626	INTERGENIC
2R	13538314	2R_13538314_SNP [dm3] 2R_17650809_SNP [dm6]	A	C	3.348e^-4	0.626	INTRON CCHa1-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10239606	2R_10239606_SNP [dm3] 2R_14352101_SNP [dm6]	T	G	3.353e^-4	0.626	UPSTREAM CG8613 DOWNSTREAM Shroom INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
2L	11673733	2L_11673733_SNP [dm3] 2L_11673733_SNP [dm6]	G	A	3.355e^-4	0.626	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.499e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2548 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	9646706	2R_9646706_SNP [dm3] 2R_13759201_SNP [dm6]	G	C	5.368e^-8	0.101	DOWNSTREAM CG6280 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	10079404	3R_10079404_SNP [dm3] 3R_14253682_SNP [dm6]	A	G	2.308e^-7	0.216	INTRON Aats-met
3L	5855282	3L_5855282_SNP [dm3] 3L_5862182_SNP [dm6]	C	T	4.687e^-7	0.293	INTERGENIC
3L	14989083	3L_14989083_SNP [dm3] 3L_14995983_SNP [dm6]	C	G	6.248e^-7	0.293	INTRON Zip71B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15578241	X_15578241_SNP [dm3] X_15684208_SNP [dm6]	T	C	8.442e^-7	0.298	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18514719	2R_18514719_SNP [dm3] 2R_22627214_SNP [dm6]	G	C	9.523e^-7	0.298	INTRON CG33143
3L	14989094	3L_14989094_SNP [dm3] 3L_14995994_SNP [dm6]	A	T	1.975e^-6	0.474	INTRON Zip71B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12035128	2R_12035128_SNP [dm3] 2R_16147623_SNP [dm6]	C	T	2.022e^-6	0.474	SYNONYMOUS_CODING Ext2	TF binding site mE1_TFBS_sens
2R	18589389	2R_18589389_SNP [dm3] 2R_22701884_SNP [dm6]	C	A	2.609e^-6	0.544	UPSTREAM robo & 1 other INTRON CG30259	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	15578250	X_15578250_SNP [dm3] X_15684217_SNP [dm6]	G	A	2.915e^-6	0.544	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	22150622	X_22150622_SNP [dm3] X_22748786_SNP [dm6]	G	A	3.188e^-6	0.544	INTRON CR44997
X	18986287	X_18986287_SNP [dm3] X_19092254_SNP [dm6]	A	T	4.100e^-6	0.612	INTERGENIC
3R	10432689	3R_10432689_SNP [dm3] 3R_14606967_SNP [dm6]	G	C	4.245e^-6	0.612	SYNONYMOUS_CODING stumps	TF binding site mE1_TFBS_HSA
2L	19577045	2L_19577045_INS [dm3] 2L_19577045_INS [dm6]	A	AA	7.014e^-6	0.703	UPSTREAM msb1l INTRON spi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	6956084	2R_6956084_SNP [dm3] 2R_11068579_SNP [dm6]	C	T	7.958e^-6	0.703	INTRON luna
3L	11822667	3L_11822667_SNP [dm3] 3L_11829567_SNP [dm6]	A	G	8.181e^-6	0.703	SPLICE_SITE_REGION CG7264 INTRON CycA & 1 other
3L	5284800	3L_5284800_SNP [dm3] 3L_5291700_SNP [dm6]	C	G	8.503e^-6	0.703	INTERGENIC	TF binding site mE1_TFBS_inv
3R	10434593	3R_10434593_SNP [dm3] 3R_14608871_SNP [dm6]	A	G	9.177e^-6	0.703	UPSTREAM CG14853 DOWNSTREAM stumps INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18516551	2R_18516551_SNP [dm3] 2R_22629046_SNP [dm6]	A	T	9.183e^-6	0.703	INTRON CG33143
2R	5824862	2R_5824862_SNP [dm3] 2R_9937357_SNP [dm6]	C	A	9.426e^-6	0.703	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	17882211	2L_17882211_SNP [dm3] 2L_17882211_SNP [dm6]	C	T	9.544e^-6	0.703	INTERGENIC
3L	11822686	3L_11822686_SNP [dm3] 3L_11829586_SNP [dm6]	G	T	9.955e^-6	0.703	INTRON CycA & 1 other
3R	708538	3R_708538_SNP [dm3] 3R_4882816_SNP [dm6]	A	G	1.052e^-5	0.703	INTERGENIC
3L	12661220	3L_12661220_DEL [dm3] 3L_12668120_DEL [dm6]	TGATGGCACTATTAGCATTT...	T	1.098e^-5	0.703	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11822670	3L_11822670_SNP [dm3] 3L_11829570_SNP [dm6]	C	G	1.099e^-5	0.703	INTRON CycA & 1 other
3R	9969030	3R_9969030_SNP [dm3] 3R_14143308_SNP [dm6]	G	A	1.261e^-5	0.703	INTERGENIC
X	11823387	X_11823387_SNP [dm3] X_11929354_SNP [dm6]	T	C	1.292e^-5	0.703	SYNONYMOUS_CODING CG10362
X	2758677	X_2758677_SNP [dm3] X_2864644_SNP [dm6]	C	G	1.303e^-5	0.703	INTRON kirre
2R	12277340	2R_12277340_SNP [dm3] 2R_16389835_SNP [dm6]	T	A	1.309e^-5	0.703	INTRON Sema-2b
2L	445650	2L_445650_DEL [dm3] 2L_445650_DEL [dm6]	CCGCACC	C	1.335e^-5	0.703		TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	8579402	3L_8579402_SNP [dm3] 3L_8586302_SNP [dm6]	A	G	1.337e^-5	0.703	SYNONYMOUS_CODING CG43078 UTR_5_PRIME CG43078	TF binding site mE1_TFBS_chinmo
2L	13145131	2L_13145131_SNP [dm3] 2L_13145131_SNP [dm6]	C	T	1.344e^-5	0.703	INTERGENIC	TF binding site mE1_TFBS_inv
3L	12659064	3L_12659064_SNP [dm3] 3L_12665964_SNP [dm6]	A	T	1.345e^-5	0.703	INTERGENIC
2L	7103525	2L_7103525_SNP [dm3] 2L_7103525_SNP [dm6]	C	T	1.413e^-5	0.703	INTRON Pvf3
3R	25363151	3R_25363151_INS [dm3] 3R_29537429_INS [dm6]	A	ATTGTA	1.423e^-5	0.703	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14362182	2R_14362182_SNP [dm3] 2R_18474677_SNP [dm6]	C	T	1.442e^-5	0.703	SYNONYMOUS_CODING CG30116
3L	10532114	3L_10532114_SNP [dm3] 3L_10539014_SNP [dm6]	A	C	1.575e^-5	0.703	INTRON A2bp1
X	1607103	X_1607103_SNP [dm3] X_1713070_SNP [dm6]	C	G	1.576e^-5	0.703	INTERGENIC
2L	10523229	2L_10523229_SNP [dm3] 2L_10523229_SNP [dm6]	G	A	1.866e^-5	0.703	INTERGENIC
X	1611801	X_1611801_SNP [dm3] X_1717768_SNP [dm6]	C	T	1.917e^-5	0.703	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	4845174	2R_4845174_SNP [dm3] 2R_8957669_SNP [dm6]	T	G	2.013e^-5	0.703	INTRON babo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18586602	2R_18586602_SNP [dm3] 2R_22699097_SNP [dm6]	A	C	2.092e^-5	0.703	INTRON robo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8851959	3L_8851959_SNP [dm3] 3L_8858859_SNP [dm6]	A	G	2.171e^-5	0.703	INTRON dally
3L	4741889	3L_4741889_SNP [dm3] 3L_4741889_SNP [dm6]	C	T	2.225e^-5	0.703	INTRON RhoGEF64C
2R	5826045	2R_5826045_SNP [dm3] 2R_9938540_SNP [dm6]	A	C	2.241e^-5	0.703	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18807566	X_18807566_SNP [dm3] X_18913533_SNP [dm6]	A	T	2.255e^-5	0.703	DOWNSTREAM CR44708 INTERGENIC
X	19357366	X_19357366_SNP [dm3] X_19463333_SNP [dm6]	A	G	2.276e^-5	0.703	INTRON kek5
2L	4790150	2L_4790150_SNP [dm3] 2L_4790150_SNP [dm6]	C	G	2.478e^-5	0.703	INTRON CG15630
3L	20974359	3L_20974359_SNP [dm3] 3L_20981259_SNP [dm6]	C	A	2.501e^-5	0.703	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12685678	2L_12685678_SNP [dm3] 2L_12685678_SNP [dm6]	T	C	2.559e^-5	0.703	SYNONYMOUS_CODING pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	11778696	2R_11778696_SNP [dm3] 2R_15891191_SNP [dm6]	T	G	2.560e^-5	0.703	START_GAINED sli UTR_5_PRIME sli UPSTREAM sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18514826	2R_18514826_DEL [dm3] 2R_22627321_DEL [dm6]	TT	T	2.563e^-5	0.703	INTRON CG33143
3R	18714664	3R_18714664_SNP [dm3] 3R_22888942_SNP [dm6]	C	G	2.763e^-5	0.703	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	1604038	X_1604038_SNP [dm3] X_1710005_SNP [dm6]	G	A	2.802e^-5	0.703	SYNONYMOUS_CODING CG3795	TF binding site mE1_TFBS_chinmo
2L	12804353	2L_12804353_SNP [dm3] 2L_12804353_SNP [dm6]	T	C	2.817e^-5	0.703	INTERGENIC
2L	14209692	2L_14209692_SNP [dm3] 2L_14209692_SNP [dm6]	C	T	2.860e^-5	0.703	INTRON Dyrk2
3R	10510392	3R_10510392_SNP [dm3] 3R_14684670_SNP [dm6]	T	G	2.862e^-5	0.703	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
X	19357703	X_19357703_SNP [dm3] X_19463670_SNP [dm6]	A	T	2.911e^-5	0.703	INTRON kek5
2L	14213642	2L_14213642_INS [dm3] 2L_14213642_INS [dm6]	T	TCGT	2.950e^-5	0.703	INTRON Dyrk2
3R	11864109	3R_11864109_SNP [dm3] 3R_16038387_SNP [dm6]	C	T	2.960e^-5	0.703	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15458291	2R_15458291_SNP [dm3] 2R_19570786_SNP [dm6]	T	G	2.979e^-5	0.703	INTRON sm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18797093	3L_18797093_SNP [dm3] 3L_18803993_SNP [dm6]	C	G	2.990e^-5	0.703	INTRON CG14073
2R	18515466	2R_18515466_SNP [dm3] 2R_22627961_SNP [dm6]	C	A	3.034e^-5	0.703	INTRON CG33143	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17866154	3R_17866154_SNP [dm3] 3R_22040432_SNP [dm6]	C	T	3.040e^-5	0.703	INTERGENIC
X	1609970	X_1609970_SNP [dm3] X_1715937_SNP [dm6]	G	T	3.105e^-5	0.703	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	18589434	2R_18589434_SNP [dm3] 2R_22701929_SNP [dm6]	A	G	3.106e^-5	0.703	SYNONYMOUS_CODING CG30259 UPSTREAM robo & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	8841083	2R_8841083_SNP [dm3] 2R_12953578_SNP [dm6]	A	C	3.236e^-5	0.703	UTR_5_PRIME CG13321	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16482562	2L_16482562_SNP [dm3] 2L_16482562_SNP [dm6]	A	G	3.245e^-5	0.703	INTRON dac	regulatory region REDfly_CRMs
3R	20038067	3R_20038067_SNP [dm3] 3R_24212345_SNP [dm6]	G	A	3.338e^-5	0.703	INTRON twin
3L	7179134	3L_7179134_SNP [dm3] 3L_7186034_SNP [dm6]	G	A	3.364e^-5	0.703	INTRON Dscam2
3L	1914686	3L_1914686_SNP [dm3] 3L_1914686_SNP [dm6]	C	A	3.381e^-5	0.703	INTERGENIC
2L	6237493	2L_6237493_SNP [dm3] 2L_6237493_SNP [dm6]	T	A	3.383e^-5	0.703	INTERGENIC
2R	8841099	2R_8841099_SNP [dm3] 2R_12953594_SNP [dm6]	G	T	3.403e^-5	0.703	UTR_5_PRIME CG13321	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8776013	3R_8776013_SNP [dm3] 3R_12950291_SNP [dm6]	A	G	3.425e^-5	0.703	SYNONYMOUS_CODING grsm
3R	8783748	3R_8783748_SNP [dm3] 3R_12958026_SNP [dm6]	C	T	3.430e^-5	0.703	INTRON grsm	TF binding site mE1_TFBS_inv
X	6881923	X_6881923_SNP [dm3] X_6987890_SNP [dm6]	G	A	3.614e^-5	0.703	DOWNSTREAM bou INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26081142	3R_26081142_INS [dm3] 3R_30255420_INS [dm6]	A	AA	3.647e^-5	0.703	INTERGENIC
2R	12392261	2R_12392261_SNP [dm3] 2R_16504756_SNP [dm6]	G	A	3.667e^-5	0.703	INTRON Sema-2a
2R	9045381	2R_9045381_SNP [dm3] 2R_13157876_SNP [dm6]	A	G	3.670e^-5	0.703	UPSTREAM CG34439 INTRON TppII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	13145125	2L_13145125_SNP [dm3] 2L_13145125_SNP [dm6]	C	T	3.690e^-5	0.703	INTERGENIC	TF binding site mE1_TFBS_inv
2L	7757226	2L_7757226_SNP [dm3] 2L_7757226_SNP [dm6]	A	G	3.717e^-5	0.703	DOWNSTREAM CG14538 INTRON CG7196
2L	8048980	2L_8048980_SNP [dm3] 2L_8048980_SNP [dm6]	C	T	3.738e^-5	0.703	SYNONYMOUS_CODING CG7466
3L	11735390	3L_11735390_SNP [dm3] 3L_11742290_SNP [dm6]	A	T	3.752e^-5	0.703	INTRON CG6024
3R	12326543	3R_12326543_SNP [dm3] 3R_16500821_SNP [dm6]	C	T	3.769e^-5	0.703	SYNONYMOUS_CODING decay	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	16936302	2L_16936302_SNP [dm3] 2L_16936302_SNP [dm6]	T	C	3.782e^-5	0.703	INTERGENIC
2L	14209641	2L_14209641_SNP [dm3] 2L_14209641_SNP [dm6]	G	A	3.868e^-5	0.703	INTRON Dyrk2
2R	16986639	2R_16986639_SNP [dm3] 2R_21099134_SNP [dm6]	A	G	3.907e^-5	0.703	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo
3L	11876838	3L_11876838_SNP [dm3] 3L_11883738_SNP [dm6]	T	G	3.939e^-5	0.703	DOWNSTREAM CCDC151 INTRON CG44837
2R	6890133	2R_6890133_SNP [dm3] 2R_11002628_SNP [dm6]	G	A	3.973e^-5	0.703	INTRON luna
X	18807591	X_18807591_SNP [dm3] X_18913558_SNP [dm6]	T	A	3.978e^-5	0.703	DOWNSTREAM CR44708 INTERGENIC
3L	7951346	3L_7951346_SNP [dm3] 3L_7958246_SNP [dm6]	G	T	3.994e^-5	0.703	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12597491	3L_12597491_SNP [dm3] 3L_12604391_SNP [dm6]	T	G	4.013e^-5	0.703	INTERGENIC
X	12232584	X_12232584_SNP [dm3] X_12338551_SNP [dm6]	G	T	4.181e^-5	0.703	INTERGENIC
2R	9045363	2R_9045363_SNP [dm3] 2R_13157858_SNP [dm6]	T	C	4.225e^-5	0.703	UPSTREAM CG34439 INTRON TppII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	2811178	X_2811178_DEL [dm3] X_2917145_DEL [dm6]	GTATCGTGCGAAAAACATAC...	T	4.466e^-5	0.703	INTRON kirre
3L	3947757	3L_3947757_SNP [dm3] 3L_3947757_SNP [dm6]	G	A	4.503e^-5	0.703	UPSTREAM CG10853 DOWNSTREAM CG14982 & 1 other INTERGENIC
3R	18459971	3R_18459971_SNP [dm3] 3R_22634249_SNP [dm6]	G	A	4.521e^-5	0.703	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	1611792	X_1611792_SNP [dm3] X_1717759_SNP [dm6]	C	T	4.534e^-5	0.703	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8579414	3L_8579414_SNP [dm3] 3L_8586314_SNP [dm6]	A	T	4.558e^-5	0.703	SYNONYMOUS_CODING CG43078 START_GAINED CG43078 UTR_5_PRIME CG43078	TF binding site mE1_TFBS_chinmo
3L	15316426	3L_15316426_INS [dm3] 3L_15323326_INS [dm6]	G	GCTCACGG	4.575e^-5	0.703	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	1607086	X_1607086_SNP [dm3] X_1713053_SNP [dm6]	C	A	4.660e^-5	0.703	INTERGENIC
2R	5380416	2R_5380416_INS [dm3] 2R_9492911_INS [dm6]	A	AAGGTTTAAGCCA...	4.735e^-5	0.703	INTERGENIC	TF binding site mE1_TFBS_sens
2R	12584785	2R_12584785_SNP [dm3] 2R_16697280_SNP [dm6]	T	C	4.757e^-5	0.703	INTRON CG30463
2R	14363281	2R_14363281_SNP [dm3] 2R_18475776_SNP [dm6]	C	T	4.956e^-5	0.703	INTRON CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6956079	2R_6956079_SNP [dm3] 2R_11068574_SNP [dm6]	T	A	4.971e^-5	0.703	INTRON luna
3R	22052593	3R_22052593_SNP [dm3] 3R_26226871_SNP [dm6]	C	G	5.013e^-5	0.703	INTERGENIC
3R	22052601	3R_22052601_SNP [dm3] 3R_26226879_SNP [dm6]	C	G	5.013e^-5	0.703	INTERGENIC
2R	18512495	2R_18512495_SNP [dm3] 2R_22624990_SNP [dm6]	A	G	5.022e^-5	0.703	INTRON CG33143
3L	11347848	3L_11347848_SNP [dm3] 3L_11354748_SNP [dm6]	C	A	5.028e^-5	0.703	INTERGENIC
X	1604268	X_1604268_SNP [dm3] X_1710235_SNP [dm6]	A	G	5.031e^-5	0.703	UPSTREAM CG3795 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	2932745	3R_2932745_SNP [dm3] 3R_7107023_SNP [dm6]	A	T	5.061e^-5	0.703	INTRON Alh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	26634040	3R_26634040_SNP [dm3] 3R_30808318_SNP [dm6]	T	A	5.072e^-5	0.703	UPSTREAM cindr DOWNSTREAM dj-1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3R	13661136	3R_13661136_SNP [dm3] 3R_17835414_SNP [dm6]	A	T	5.110e^-5	0.703	INTRON tinc
2R	18518923	2R_18518923_SNP [dm3] 2R_22631418_SNP [dm6]	T	C	5.258e^-5	0.703	INTRON CG33143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5826362	2R_5826362_SNP [dm3] 2R_9938857_SNP [dm6]	G	A	5.272e^-5	0.703	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	10732091	X_10732091_SNP [dm3] X_10838058_SNP [dm6]	G	A	5.275e^-5	0.703	INTRON sbr
2R	18515235	2R_18515235_SNP [dm3] 2R_22627730_SNP [dm6]	T	C	5.301e^-5	0.703	INTRON CG33143	TF binding site mE1_TFBS_chinmo
3L	19015978	3L_19015978_SNP [dm3] 3L_19022878_SNP [dm6]	C	A	5.313e^-5	0.703	INTRON nkd	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
2R	18589427	2R_18589427_SNP [dm3] 2R_22701922_SNP [dm6]	T	C	5.371e^-5	0.703	SPLICE_SITE_REGION CG30259 UPSTREAM robo & 1 other INTRON CG30259	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	18714490	3R_18714490_SNP [dm3] 3R_22888768_SNP [dm6]	C	T	5.389e^-5	0.703	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	23187826	3R_23187826_SNP [dm3] 3R_27362104_SNP [dm6]	C	T	5.423e^-5	0.703	SYNONYMOUS_CODING CG42534	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22639448	3R_22639448_SNP [dm3] 3R_26813726_SNP [dm6]	A	G	5.442e^-5	0.703	INTRON Tl
3L	10532110	3L_10532110_SNP [dm3] 3L_10539010_SNP [dm6]	A	T	5.544e^-5	0.703	INTRON A2bp1
3R	22372493	3R_22372493_SNP [dm3] 3R_26546771_SNP [dm6]	T	C	5.604e^-5	0.703	INTRON scrib	TF binding site BDTNP1_TFBS_da
3L	18797084	3L_18797084_SNP [dm3] 3L_18803984_SNP [dm6]	C	A	5.627e^-5	0.703	INTRON CG14073
X	2811219	X_2811219_SNP [dm3] X_2917186_SNP [dm6]	T	C	5.631e^-5	0.703	INTRON kirre
3L	7165954	3L_7165954_SNP [dm3] 3L_7172854_SNP [dm6]	T	C	5.639e^-5	0.703	INTRON Dscam2
3L	7165956	3L_7165956_INS [dm3] 3L_7172856_INS [dm6]	T	CCTTCAGC	5.639e^-5	0.703	INTRON Dscam2
2R	18515446	2R_18515446_SNP [dm3] 2R_22627941_SNP [dm6]	A	G	5.658e^-5	0.703	SYNONYMOUS_CODING CG33143	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6488134	3L_6488134_SNP [dm3] 3L_6495034_SNP [dm6]	G	A	5.661e^-5	0.703	UPSTREAM sfl INTRON CG10144	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	22762183	3R_22762183_SNP [dm3] 3R_26936461_SNP [dm6]	C	T	5.677e^-5	0.703	INTRON sda
3R	14829901	3R_14829901_SNP [dm3] 3R_19004179_SNP [dm6]	G	T	5.699e^-5	0.703	INTRON gukh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1671705	2L_1671705_SNP [dm3] 2L_1671705_SNP [dm6]	A	G	5.746e^-5	0.703	INTRON chinmo
3R	26633539	3R_26633539_SNP [dm3] 3R_30807817_SNP [dm6]	A	G	5.759e^-5	0.703	NON_SYNONYMOUS_CODING dj-1beta UPSTREAM cindr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8151739	3L_8151739_SNP [dm3] 3L_8158639_SNP [dm6]	C	T	5.804e^-5	0.703	UTR_5_PRIME CG42445 DOWNSTREAM CG43886 INTRON CG42445
2L	14213646	2L_14213646_SNP [dm3] 2L_14213646_SNP [dm6]	T	C	5.843e^-5	0.703	INTRON Dyrk2
3L	9524027	3L_9524027_SNP [dm3] 3L_9530927_SNP [dm6]	G	A	5.855e^-5	0.703	SYNONYMOUS_CODING Or67a
3R	14085447	3R_14085447_SNP [dm3] 3R_18259725_SNP [dm6]	C	T	5.858e^-5	0.703	INTERGENIC
2R	7077124	2R_7077124_SNP [dm3] 2R_11189619_SNP [dm6]	G	T	5.887e^-5	0.703	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17843199	2R_17843199_SNP [dm3] 2R_21955694_SNP [dm6]	A	T	5.982e^-5	0.703	UPSTREAM CG13494 INTERGENIC
2L	13443450	2L_13443450_SNP [dm3] 2L_13443450_SNP [dm6]	C	A	6.041e^-5	0.703	DOWNSTREAM CG9267 INTRON CG42784	TF binding site mE1_TFBS_cad
2R	5826799	2R_5826799_SNP [dm3] 2R_9939294_SNP [dm6]	T	A	6.061e^-5	0.703	INTRON Mef2	regulatory region REDfly_CRMs
2L	9046742	2L_9046742_SNP [dm3] 2L_9046742_SNP [dm6]	T	C	6.090e^-5	0.703	INTERGENIC
X	2358279	X_2358279_SNP [dm3] X_2464246_SNP [dm6]	G	A	6.122e^-5	0.703	INTRON boi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	439568	2L_439568_SNP [dm3] 2L_439568_SNP [dm6]	G	A	6.160e^-5	0.703	INTRON ex EXON CR43717
3L	6488539	3L_6488539_SNP [dm3] 3L_6495439_SNP [dm6]	G	T	6.162e^-5	0.703	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
3L	6488624	3L_6488624_SNP [dm3] 3L_6495524_SNP [dm6]	T	A	6.162e^-5	0.703	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	10082186	3R_10082186_SNP [dm3] 3R_14256464_SNP [dm6]	A	C	6.177e^-5	0.703	NON_SYNONYMOUS_CODING CG43179 INTRON Aats-met
3R	8783741	3R_8783741_SNP [dm3] 3R_12958019_SNP [dm6]	T	A	6.246e^-5	0.703	INTRON grsm	TF binding site mE1_TFBS_inv
3L	12659391	3L_12659391_SNP [dm3] 3L_12666291_SNP [dm6]	C	T	6.287e^-5	0.703	INTERGENIC
2R	5834980	2R_5834980_SNP [dm3] 2R_9947475_SNP [dm6]	A	C	6.290e^-5	0.703	INTRON Mef2	TF binding site mE1_TFBS_sens
2L	10551066	2L_10551066_SNP [dm3] 2L_10551066_SNP [dm6]	G	A	6.298e^-5	0.703	INTRON Trim9
X	1604221	X_1604221_SNP [dm3] X_1710188_SNP [dm6]	C	T	6.324e^-5	0.703	UPSTREAM CG3795 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	6468115	2R_6468115_INS [dm3] 2R_10580610_INS [dm6]	C	CC	6.369e^-5	0.703	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	18518060	2R_18518060_SNP [dm3] 2R_22630555_SNP [dm6]	T	C	6.373e^-5	0.703	SYNONYMOUS_CODING CG33143 INTRON CG33143	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18537403	2R_18537403_SNP [dm3] 2R_22649898_SNP [dm6]	T	C	6.385e^-5	0.703	UPSTREAM nsr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13754075	2L_13754075_SNP [dm3] 2L_13754075_SNP [dm6]	G	A	6.466e^-5	0.703	INTRON CR44846 & 1 other EXON CR44846
X	1614597	X_1614597_SNP [dm3] X_1720564_SNP [dm6]	T	A	6.510e^-5	0.703	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	22149054	X_22149054_SNP [dm3] X_22747218_SNP [dm6]	G	T	6.528e^-5	0.703	INTRON CR44997
2L	1487462	2L_1487462_SNP [dm3] 2L_1487462_SNP [dm6]	C	T	6.616e^-5	0.703	INTERGENIC
3R	20275646	3R_20275646_SNP [dm3] 3R_24449924_SNP [dm6]	C	A	6.682e^-5	0.703	INTRON nAChRalpha1
2L	13503318	2L_13503318_SNP [dm3] 2L_13503318_SNP [dm6]	A	G	6.745e^-5	0.703	UTR_3_PRIME B4
2R	5847549	2R_5847549_SNP [dm3] 2R_9960044_SNP [dm6]	A	T	6.755e^-5	0.703	UTR_5_PRIME Pal1 UPSTREAM Pal1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	4561269	2R_4561269_SNP [dm3] 2R_8673764_SNP [dm6]	T	A	6.825e^-5	0.703	INTRON Acsl	TF binding site mE1_TFBS_Trl
2R	18591522	2R_18591522_SNP [dm3] 2R_22704017_SNP [dm6]	G	A	6.839e^-5	0.703	SYNONYMOUS_CODING CG30259 UPSTREAM Obp58b DOWNSTREAM Obp59a
2R	5834927	2R_5834927_SNP [dm3] 2R_9947422_SNP [dm6]	A	G	6.853e^-5	0.703	INTRON Mef2	TF binding site mE1_TFBS_sens
3R	2932744	3R_2932744_SNP [dm3] 3R_7107022_SNP [dm6]	G	A	6.932e^-5	0.703	INTRON Alh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
X	6332899	X_6332899_SNP [dm3] X_6438866_SNP [dm6]	C	T	6.956e^-5	0.703	INTRON CG42340
2R	5837819	2R_5837819_SNP [dm3] 2R_9950314_SNP [dm6]	T	C	6.958e^-5	0.703	INTRON Mef2
3R	17866997	3R_17866997_SNP [dm3] 3R_22041275_SNP [dm6]	C	A	6.970e^-5	0.703	UPSTREAM how INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4741696	3L_4741696_SNP [dm3] 3L_4741696_SNP [dm6]	C	A	6.987e^-5	0.703	INTRON RhoGEF64C
3L	9482814	3L_9482814_SNP [dm3] 3L_9489714_SNP [dm6]	T	A	7.061e^-5	0.703	UTR_3_PRIME CG32037 UPSTREAM CG32036 DOWNSTREAM CG32037
2R	5826402	2R_5826402_SNP [dm3] 2R_9938897_SNP [dm6]	T	A	7.064e^-5	0.703	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	15115352	3L_15115352_SNP [dm3] 3L_15122252_SNP [dm6]	G	T	7.065e^-5	0.703	UTR_3_PRIME CG32847 INTRON Cep135 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	18240429	2R_18240429_SNP [dm3] 2R_22352924_SNP [dm6]	C	T	7.069e^-5	0.703	INTRON Liprin-gamma
2L	21382557	2L_21382557_SNP [dm3] 2L_21382557_SNP [dm6]	G	A	7.136e^-5	0.703	INTRON nrv3
3R	12854934	3R_12854934_SNP [dm3] 3R_17029212_SNP [dm6]	C	T	7.184e^-5	0.703	NON_SYNONYMOUS_CODING CG5225	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6488565	3L_6488565_SNP [dm3] 3L_6495465_SNP [dm6]	T	C	7.185e^-5	0.703	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
2L	6748024	2L_6748024_SNP [dm3] 2L_6748024_SNP [dm6]	G	C	7.226e^-5	0.703	UPSTREAM CG44271 INTRON CG11221
X	3055590	X_3055590_SNP [dm3] X_3161557_SNP [dm6]	T	A	7.262e^-5	0.703	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	13953453	3L_13953453_INS [dm3] 3L_13960353_INS [dm6]	A	ATGTA	7.323e^-5	0.703	INTRON CG32137
2L	5540481	2L_5540481_SNP [dm3] 2L_5540481_SNP [dm6]	T	C	7.347e^-5	0.703	UTR_3_PRIME Hel25E INTRON Hel25E	TF binding site mE1_TFBS_sens
2R	5834955	2R_5834955_SNP [dm3] 2R_9947450_SNP [dm6]	G	T	7.370e^-5	0.703	INTRON Mef2	TF binding site mE1_TFBS_sens
X	2811173	X_2811173_SNP [dm3] X_2917140_SNP [dm6]	C	A	7.401e^-5	0.703	INTRON kirre
3L	6488526	3L_6488526_SNP [dm3] 3L_6495426_SNP [dm6]	T	G	7.442e^-5	0.703	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
2L	9629119	2L_9629119_SNP [dm3] 2L_9629119_SNP [dm6]	T	C	7.463e^-5	0.703	INTERGENIC
X	18413295	X_18413295_SNP [dm3] X_18519262_SNP [dm6]	A	C	7.480e^-5	0.703	INTRON Bx & 1 other	TF binding site mE1_TFBS_chinmo
2R	5826403	2R_5826403_SNP [dm3] 2R_9938898_SNP [dm6]	T	A	7.542e^-5	0.703	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	6492072	2R_6492072_SNP [dm3] 2R_10604567_SNP [dm6]	T	G	7.606e^-5	0.703	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	2146002	3L_2146002_SNP [dm3] 3L_2146002_SNP [dm6]	T	G	7.626e^-5	0.703	INTRON zormin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2753038	X_2753038_SNP [dm3] X_2859005_SNP [dm6]	A	T	7.671e^-5	0.703	INTRON kirre
2L	10105667	2L_10105667_SNP [dm3] 2L_10105667_SNP [dm6]	G	A	7.706e^-5	0.703	INTRON CG44153 & 1 other
2R	5515671	2R_5515671_SNP [dm3] 2R_9628166_SNP [dm6]	G	A	7.707e^-5	0.703	INTRON Mmp2
2L	16947205	2L_16947205_SNP [dm3] 2L_16947205_SNP [dm6]	T	C	7.707e^-5	0.703	DOWNSTREAM CR44393 INTERGENIC
3R	11793187	3R_11793187_SNP [dm3] 3R_15967465_SNP [dm6]	G	A	7.742e^-5	0.703	SYNONYMOUS_CODING Rbf2 DOWNSTREAM mor	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	22269193	X_22269193_SNP [dm3] X_22867357_SNP [dm6]	T	C	7.759e^-5	0.703	INTRON CG42346	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	16095767	2L_16095767_SNP [dm3] 2L_16095767_SNP [dm6]	A	G	7.771e^-5	0.703	SYNONYMOUS_CODING CG4891
2L	16031155	2L_16031155_INS [dm3] 2L_16031155_INS [dm6]	T	TTTCAT	7.772e^-5	0.703	INTRON beat-Ic
3L	15647309	3L_15647309_SNP [dm3] 3L_15654209_SNP [dm6]	A	T	7.856e^-5	0.703	DOWNSTREAM Eig71Ee INTERGENIC
2L	439486	2L_439486_SNP [dm3] 2L_439486_SNP [dm6]	C	T	7.933e^-5	0.703	UPSTREAM CR43717 INTRON ex
2R	8841394	2R_8841394_SNP [dm3] 2R_12953889_SNP [dm6]	G	C	7.936e^-5	0.703	INTRON CG13321
3R	26151474	3R_26151474_SNP [dm3] 3R_30325752_SNP [dm6]	G	A	7.994e^-5	0.703	INTRON hdc	TF binding site mE1_TFBS_chinmo
3L	16426118	3L_16426118_SNP [dm3] 3L_16433018_SNP [dm6]	T	A	8.006e^-5	0.703	INTRON CG33158 & 1 other
3L	21228103	3L_21228103_SNP [dm3] 3L_21235003_SNP [dm6]	T	C	8.027e^-5	0.703	INTRON Eip78C
X	6332908	X_6332908_SNP [dm3] X_6438875_SNP [dm6]	G	T	8.058e^-5	0.703	INTRON CG42340
2R	18535652	2R_18535652_SNP [dm3] 2R_22648147_SNP [dm6]	T	C	8.071e^-5	0.703	UPSTREAM CG30195 & 1 other DOWNSTREAM CG3746 INTRON CG34445
X	18982699	X_18982699_SNP [dm3] X_19088666_SNP [dm6]	C	A	8.099e^-5	0.703	INTERGENIC
2L	10446054	2L_10446054_SNP [dm3] 2L_10446054_SNP [dm6]	G	T	8.161e^-5	0.703	INTRON loh
2R	13654460	2R_13654460_SNP [dm3] 2R_17766955_SNP [dm6]	T	G	8.250e^-5	0.703	UTR_5_PRIME OstDelta UPSTREAM mir-3643 DOWNSTREAM CG14488 & 1 other EXON CR44416	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	2358306	X_2358306_SNP [dm3] X_2464273_SNP [dm6]	A	G	8.269e^-5	0.703	INTRON boi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	13754093	2L_13754093_SNP [dm3] 2L_13754093_SNP [dm6]	A	C	8.293e^-5	0.703	INTRON CR44846 & 1 other EXON CR44846
3L	4345958	3L_4345958_SNP [dm3] 3L_4345958_SNP [dm6]	C	T	8.399e^-5	0.703	UPSTREAM Cip4 INTRON Cip4 EXON CR45156
3R	25353757	3R_25353757_SNP [dm3] 3R_29528035_SNP [dm6]	A	T	8.479e^-5	0.703	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6492101	2R_6492101_SNP [dm3] 2R_10604596_SNP [dm6]	G	A	8.484e^-5	0.703	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	1604161	X_1604161_SNP [dm3] X_1710128_SNP [dm6]	C	G	8.494e^-5	0.703	SYNONYMOUS_CODING CG3795	TF binding site mE1_TFBS_chinmo
2R	5834956	2R_5834956_SNP [dm3] 2R_9947451_SNP [dm6]	T	A	8.521e^-5	0.703	INTRON Mef2	TF binding site mE1_TFBS_sens
3R	12046155	3R_12046155_SNP [dm3] 3R_16220433_SNP [dm6]	C	T	8.587e^-5	0.703	INTERGENIC
2L	14213623	2L_14213623_SNP [dm3] 2L_14213623_SNP [dm6]	T	A	8.614e^-5	0.703	INTRON Dyrk2
X	4367164	X_4367164_INS [dm3] X_4473131_INS [dm6]	T	TAACGAACTAACTT...	8.629e^-5	0.703	INTRON bi & 1 other
3L	6488523	3L_6488523_SNP [dm3] 3L_6495423_SNP [dm6]	G	A	8.631e^-5	0.703	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
2L	14208352	2L_14208352_SNP [dm3] 2L_14208352_SNP [dm6]	C	T	8.663e^-5	0.703	INTRON Dyrk2
2L	4786646	2L_4786646_SNP [dm3] 2L_4786646_SNP [dm6]	A	T	8.680e^-5	0.703	INTRON CG15630
3L	5648686	3L_5648686_SNP [dm3] 3L_5655586_SNP [dm6]	A	G	8.704e^-5	0.703	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6488469	3L_6488469_SNP [dm3] 3L_6495369_SNP [dm6]	G	T	8.730e^-5	0.703	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
3L	2952157	3L_2952157_SNP [dm3] 3L_2952157_SNP [dm6]	A	T	8.741e^-5	0.703	UPSTREAM CG32846 INTRON Shab	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	19525551	3R_19525551_SNP [dm3] 3R_23699829_SNP [dm6]	G	A	8.759e^-5	0.703	UTR_3_PRIME CG31468 UPSTREAM prt & 1 other DOWNSTREAM CG31468
2L	9203180	2L_9203180_SNP [dm3] 2L_9203180_SNP [dm6]	G	A	8.855e^-5	0.703	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	15432060	2R_15432060_SNP [dm3] 2R_19544555_SNP [dm6]	C	T	8.870e^-5	0.703	INTRON sm	TF binding site BDTNP1_TFBS_twi
3R	1710820	3R_1710820_SNP [dm3] 3R_5885098_SNP [dm6]	A	T	9.004e^-5	0.703	INTRON CG34113
2L	7757214	2L_7757214_SNP [dm3] 2L_7757214_SNP [dm6]	C	T	9.039e^-5	0.703	DOWNSTREAM CG14538 INTRON CG7196
2L	6001104	2L_6001104_SNP [dm3] 2L_6001104_SNP [dm6]	C	A	9.063e^-5	0.703	INTRON Tsp26A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12685685	2L_12685685_SNP [dm3] 2L_12685685_SNP [dm6]	C	T	9.083e^-5	0.703	SYNONYMOUS_CODING pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	1609634	X_1609634_SNP [dm3] X_1715601_SNP [dm6]	G	A	9.104e^-5	0.703	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14973157	3L_14973157_SNP [dm3] 3L_14980057_SNP [dm6]	T	G	9.115e^-5	0.703	INTRON CG3349	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sbb
2L	5539607	2L_5539607_INS [dm3] 2L_5539607_INS [dm6]	C	CTGGTT	9.116e^-5	0.703	UTR_3_PRIME Hel25E UPSTREAM CG14015
X	9216506	X_9216506_SNP [dm3] X_9322473_SNP [dm6]	C	T	9.135e^-5	0.703	SYNONYMOUS_CODING c12.2	TF binding site mE1_TFBS_chinmo
2L	16944653	2L_16944653_SNP [dm3] 2L_16944653_SNP [dm6]	C	T	9.160e^-5	0.703	DOWNSTREAM CR43053 INTERGENIC
2R	5842008	2R_5842008_SNP [dm3] 2R_9954503_SNP [dm6]	C	T	9.181e^-5	0.703	INTRON Mef2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12384085	3L_12384085_SNP [dm3] 3L_12390985_SNP [dm6]	C	T	9.208e^-5	0.703	UTR_5_PRIME Ncc69 INTRON Ncc69	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12442165	3R_12442165_SNP [dm3] 3R_16616443_SNP [dm6]	C	G	9.270e^-5	0.703	NON_SYNONYMOUS_CODING CG17562
3R	20254870	3R_20254870_DEL [dm3] 3R_24429148_DEL [dm6]	AA	A	9.277e^-5	0.703	INTRON nAChRalpha1	TF binding site mE1_TFBS_chinmo
3L	8151378	3L_8151378_SNP [dm3] 3L_8158278_SNP [dm6]	C	T	9.300e^-5	0.703	INTRON CG42445
3R	7365104	3R_7365104_SNP [dm3] 3R_11539382_SNP [dm6]	G	A	9.311e^-5	0.703	INTRON dpr4	TF binding site mE1_TFBS_inv
3L	2858312	3L_2858312_DEL [dm3] 3L_2858312_DEL [dm6]	TA	T	9.354e^-5	0.703	INTRON CG43444
2R	14457867	2R_14457867_SNP [dm3] 2R_18570362_SNP [dm6]	C	T	9.358e^-5	0.703	INTRON GEFmeso
3L	9709931	3L_9709931_SNP [dm3] 3L_9716831_SNP [dm6]	G	A	9.361e^-5	0.703	UTR_3_PRIME vsg DOWNSTREAM CG18178 EXON snmRNA:838
2R	15827944	2R_15827944_SNP [dm3] 2R_19940439_SNP [dm6]	G	A	9.366e^-5	0.703	EXON CR43421	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	10447441	3L_10447441_SNP [dm3] 3L_10454341_SNP [dm6]	G	A	9.405e^-5	0.703	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10465673	2L_10465673_SNP [dm3] 2L_10465673_SNP [dm6]	T	C	9.425e^-5	0.703	INTRON RluA-1
2L	15115080	2L_15115080_SNP [dm3] 2L_15115080_SNP [dm6]	G	A	9.448e^-5	0.703	NON_SYNONYMOUS_CODING stc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18383848	2R_18383848_SNP [dm3] 2R_22496343_SNP [dm6]	A	G	9.449e^-5	0.703	SYNONYMOUS_CODING px DOWNSTREAM px
2R	7881839	2R_7881839_SNP [dm3] 2R_11994334_SNP [dm6]	A	T	9.510e^-5	0.703	UPSTREAM CR45318 DOWNSTREAM CR45319 EXON CR45319
3L	7275670	3L_7275670_SNP [dm3] 3L_7282570_SNP [dm6]	A	C	9.618e^-5	0.703	INTRON unc-13-4A
3R	15008179	3R_15008179_SNP [dm3] 3R_19182457_SNP [dm6]	G	T	9.652e^-5	0.703	INTRON CG31475
3L	4482439	3L_4482439_SNP [dm3] 3L_4482439_SNP [dm6]	A	G	9.659e^-5	0.703	UPSTREAM CG11350 DOWNSTREAM CG7465 INTERGENIC
2L	16488974	2L_16488974_SNP [dm3] 2L_16488974_SNP [dm6]	G	A	9.671e^-5	0.703	NON_SYNONYMOUS_CODING CG4580	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
2R	9045349	2R_9045349_SNP [dm3] 2R_13157844_SNP [dm6]	G	A	9.690e^-5	0.703	UPSTREAM CG34439 INTRON TppII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	14966659	3L_14966659_SNP [dm3] 3L_14973559_SNP [dm6]	C	A	9.691e^-5	0.703	DOWNSTREAM Brd INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	17843102	2R_17843102_INS [dm3] 2R_21955597_INS [dm6]	T	TGCATCATCTA...	9.704e^-5	0.703	UPSTREAM CG13494 INTERGENIC
2R	20090714	2R_20090714_SNP [dm3] 2R_24203191_SNP [dm6]	C	G	9.812e^-5	0.703	UTR_3_PRIME CG11406 INTRON CG11406
2R	9437518	2R_9437518_SNP [dm3] 2R_13550013_SNP [dm6]	C	T	9.831e^-5	0.703	SYNONYMOUS_CODING CG33156 INTRON CG33156	TF binding site mE1_TFBS_inv
X	7373644	X_7373644_DEL [dm3] X_7479611_DEL [dm6]	TGGCT	C	9.843e^-5	0.703	INTERGENIC
3L	6488556	3L_6488556_SNP [dm3] 3L_6495456_SNP [dm6]	T	G	9.852e^-5	0.703	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
2L	7757230	2L_7757230_DEL [dm3] 2L_7757230_DEL [dm6]	TT	T	1.006e^-4	0.704	DOWNSTREAM CG14538 INTRON CG7196
3L	12610325	3L_12610325_SNP [dm3] 3L_12617225_SNP [dm6]	C	A	1.009e^-4	0.704	SYNONYMOUS_CODING caup	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11173732	2L_11173732_SNP [dm3] 2L_11173732_SNP [dm6]	T	A	1.019e^-4	0.704	INTRON Ca-beta	TF binding site mE1_TFBS_HSA
3L	14710203	3L_14710203_SNP [dm3] 3L_14717103_SNP [dm6]	C	A	1.026e^-4	0.704	INTRON ome	regulatory region REDfly_CRMs
2R	10576914	2R_10576914_SNP [dm3] 2R_14689409_SNP [dm6]	C	T	1.028e^-4	0.704	INTRON mspo
3L	16900417	3L_16900417_SNP [dm3] 3L_16907317_SNP [dm6]	G	A	1.039e^-4	0.704	DOWNSTREAM Lmpt INTRON Lmpt
2L	445467	2L_445467_SNP [dm3] 2L_445467_SNP [dm6]	A	C	1.043e^-4	0.704	SYNONYMOUS_CODING ex	TF binding site mE1_TFBS_sens
3R	9961938	3R_9961938_SNP [dm3] 3R_14136216_SNP [dm6]	G	A	1.044e^-4	0.704	INTERGENIC
3L	5639326	3L_5639326_SNP [dm3] 3L_5646226_SNP [dm6]	C	T	1.046e^-4	0.704	SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12661257	3L_12661257_SNP [dm3] 3L_12668157_SNP [dm6]	G	T	1.046e^-4	0.704	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22184623	X_22184623_SNP [dm3] X_22782787_SNP [dm6]	T	C	1.055e^-4	0.704	INTRON CR44997
2L	13754116	2L_13754116_SNP [dm3] 2L_13754116_SNP [dm6]	G	C	1.055e^-4	0.704	INTRON CR44846 & 1 other EXON CR44846
2L	6401192	2L_6401192_SNP [dm3] 2L_6401192_SNP [dm6]	G	T	1.055e^-4	0.704	INTRON CG42368
2R	6492065	2R_6492065_SNP [dm3] 2R_10604560_SNP [dm6]	A	T	1.066e^-4	0.704	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	439541	2L_439541_SNP [dm3] 2L_439541_SNP [dm6]	T	A	1.072e^-4	0.704	INTRON ex EXON CR43717
2L	7994944	2L_7994944_SNP [dm3] 2L_7994944_SNP [dm6]	C	T	1.073e^-4	0.704	UTR_3_PRIME CG7227 UPSTREAM pes EXON CR44996	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
2L	6738220	2L_6738220_SNP [dm3] 2L_6738220_SNP [dm6]	C	T	1.076e^-4	0.704	INTRON TTLL3A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16325197	3R_16325197_SNP [dm3] 3R_20499475_SNP [dm6]	A	G	1.077e^-4	0.704	DOWNSTREAM Dic2 INTERGENIC
3R	11793211	3R_11793211_SNP [dm3] 3R_15967489_SNP [dm6]	G	C	1.079e^-4	0.704	SYNONYMOUS_CODING Rbf2 DOWNSTREAM mor	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	1611964	X_1611964_SNP [dm3] X_1717931_SNP [dm6]	G	A	1.081e^-4	0.704	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	11483880	3R_11483880_SNP [dm3] 3R_15658158_SNP [dm6]	C	T	1.084e^-4	0.704	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	14209110	2L_14209110_SNP [dm3] 2L_14209110_SNP [dm6]	T	C	1.091e^-4	0.704	INTRON Dyrk2
2L	11610263	2L_11610263_SNP [dm3] 2L_11610263_SNP [dm6]	T	C	1.095e^-4	0.704	DOWNSTREAM spag4 INTRON kek2
3L	9018506	3L_9018506_SNP [dm3] 3L_9025406_SNP [dm6]	G	C	1.095e^-4	0.704	INTERGENIC
2R	18587646	2R_18587646_SNP [dm3] 2R_22700141_SNP [dm6]	T	G	1.096e^-4	0.704	INTRON robo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	6488591	3L_6488591_SNP [dm3] 3L_6495491_SNP [dm6]	G	A	1.098e^-4	0.704	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
3R	14153921	3R_14153921_SNP [dm3] 3R_18328199_SNP [dm6]	C	A	1.099e^-4	0.704	INTRON CG31235
X	1609628	X_1609628_SNP [dm3] X_1715595_SNP [dm6]	T	A	1.107e^-4	0.704	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12442086	3R_12442086_SNP [dm3] 3R_16616364_SNP [dm6]	T	C	1.113e^-4	0.704	SYNONYMOUS_CODING CG17562
2L	256339	2L_256339_SNP [dm3] 2L_256339_SNP [dm6]	G	A	1.119e^-4	0.704	INTRON CG3645
3L	16417438	3L_16417438_SNP [dm3] 3L_16424338_SNP [dm6]	C	A	1.119e^-4	0.704	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	12063931	2R_12063931_SNP [dm3] 2R_16176426_SNP [dm6]	T	C	1.128e^-4	0.704	INTRON Ptp52F
2L	7340708	2L_7340708_SNP [dm3] 2L_7340708_SNP [dm6]	G	T	1.129e^-4	0.704	INTRON Wnt6	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	5834978	2R_5834978_SNP [dm3] 2R_9947473_SNP [dm6]	A	T	1.130e^-4	0.704	INTRON Mef2	TF binding site mE1_TFBS_sens
3L	13012198	3L_13012198_SNP [dm3] 3L_13019098_SNP [dm6]	T	A	1.131e^-4	0.704	DOWNSTREAM AdenoK INTRON ste14 EXON CR45445
3L	6488553	3L_6488553_SNP [dm3] 3L_6495453_SNP [dm6]	A	C	1.132e^-4	0.704	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
2R	18518495	2R_18518495_SNP [dm3] 2R_22630990_SNP [dm6]	T	C	1.134e^-4	0.704	INTRON CG33143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7116390	2L_7116390_SNP [dm3] 2L_7116390_SNP [dm6]	C	T	1.142e^-4	0.704	INTRON Pvf3
2L	4365310	2L_4365310_SNP [dm3] 2L_4365310_SNP [dm6]	T	C	1.143e^-4	0.704	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	10532404	2L_10532404_SNP [dm3] 2L_10532404_SNP [dm6]	T	C	1.150e^-4	0.704	SYNONYMOUS_CODING CG18301 DOWNSTREAM Lip4
2R	11998634	2R_11998634_SNP [dm3] 2R_16111129_SNP [dm6]	T	C	1.155e^-4	0.704	INTRON Asph	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25353794	3R_25353794_SNP [dm3] 3R_29528072_SNP [dm6]	C	T	1.163e^-4	0.704	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6881891	2R_6881891_SNP [dm3] 2R_10994386_SNP [dm6]	C	G	1.165e^-4	0.704	INTRON luna	TF binding site BDTNP1_TFBS_twi
2R	12063887	2R_12063887_SNP [dm3] 2R_16176382_SNP [dm6]	A	T	1.166e^-4	0.704	INTRON Ptp52F
3L	14966812	3L_14966812_SNP [dm3] 3L_14973712_SNP [dm6]	G	T	1.168e^-4	0.704	DOWNSTREAM Brd INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10537521	2L_10537521_SNP [dm3] 2L_10537521_SNP [dm6]	T	C	1.168e^-4	0.704	DOWNSTREAM CG18302 INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	23005088	3R_23005088_SNP [dm3] 3R_27179366_SNP [dm6]	G	A	1.173e^-4	0.704	SPLICE_SITE_REGION Ser INTRON Ser
3L	6488571	3L_6488571_SNP [dm3] 3L_6495471_SNP [dm6]	T	A	1.177e^-4	0.704	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
3L	6488573	3L_6488573_SNP [dm3] 3L_6495473_SNP [dm6]	A	C	1.177e^-4	0.704	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
2L	9203208	2L_9203208_DEL [dm3] 2L_9203208_DEL [dm6]	CA	T	1.177e^-4	0.704	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	16953959	2L_16953959_INS [dm3] 2L_16953959_INS [dm6]	G	GTAAGTTATCAG...	1.178e^-4	0.704	INTERGENIC
3L	7818836	3L_7818836_SNP [dm3] 3L_7825736_SNP [dm6]	T	C	1.184e^-4	0.705	NON_SYNONYMOUS_CODING Pdp1 INTRON Pdp1
3R	16433690	3R_16433690_SNP [dm3] 3R_20607968_SNP [dm6]	T	G	1.193e^-4	0.706	INTRON bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16944724	2L_16944724_SNP [dm3] 2L_16944724_SNP [dm6]	T	A	1.194e^-4	0.706	EXON CR43053
2R	5835084	2R_5835084_SNP [dm3] 2R_9947579_SNP [dm6]	C	T	1.202e^-4	0.706	INTRON Mef2
3R	23276859	3R_23276859_SNP [dm3] 3R_27451137_SNP [dm6]	G	A	1.204e^-4	0.706	INTERGENIC
2R	11653281	2R_11653281_SNP [dm3] 2R_15765776_SNP [dm6]	T	C	1.209e^-4	0.706	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6492159	2R_6492159_SNP [dm3] 2R_10604654_SNP [dm6]	G	A	1.210e^-4	0.706	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	12646996	2R_12646996_SNP [dm3] 2R_16759491_SNP [dm6]	T	A	1.213e^-4	0.706	INTRON unc-104
3L	10223317	3L_10223317_SNP [dm3] 3L_10230217_SNP [dm6]	G	T	1.216e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
X	2594261	X_2594261_SNP [dm3] X_2700228_SNP [dm6]	G	C	1.225e^-4	0.708	NON_SYNONYMOUS_CODING CG2662 DOWNSTREAM Csat	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15831090	3L_15831090_SNP [dm3] 3L_15837990_SNP [dm6]	C	T	1.227e^-4	0.708	NON_SYNONYMOUS_CODING CG32150 UTR_3_PRIME CG32150 UPSTREAM CG15715	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	11823366	X_11823366_SNP [dm3] X_11929333_SNP [dm6]	A	C	1.233e^-4	0.71	SYNONYMOUS_CODING CG10362
2L	120630	2L_120630_DEL [dm3] 2L_120630_DEL [dm6]	AT	C	1.238e^-4	0.71	UTR_5_PRIME CG4822 INTRON CG11455 & 1 other
2R	12035136	2R_12035136_SNP [dm3] 2R_16147631_SNP [dm6]	T	C	1.255e^-4	0.712	NON_SYNONYMOUS_CODING Ext2	TF binding site mE1_TFBS_sens
2L	7469272	2L_7469272_SNP [dm3] 2L_7469272_SNP [dm6]	G	T	1.257e^-4	0.712	INTRON CG6055
2L	7992870	2L_7992870_SNP [dm3] 2L_7992870_SNP [dm6]	T	C	1.264e^-4	0.712	INTRON pes	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	6616165	2L_6616165_SNP [dm3] 2L_6616165_SNP [dm6]	G	T	1.267e^-4	0.712	DOWNSTREAM CG11320 INTRON CG11050	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18580602	2R_18580602_SNP [dm3] 2R_22693097_SNP [dm6]	G	C	1.274e^-4	0.712	UTR_3_PRIME robo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11574068	3R_11574068_SNP [dm3] 3R_15748346_SNP [dm6]	C	T	1.280e^-4	0.712	INTERGENIC
2R	5826290	2R_5826290_SNP [dm3] 2R_9938785_SNP [dm6]	T	G	1.283e^-4	0.712	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	7881780	2R_7881780_SNP [dm3] 2R_11994275_SNP [dm6]	T	A	1.287e^-4	0.712	UPSTREAM CR45318 DOWNSTREAM CR45319 EXON CR45319
2R	16935485	2R_16935485_SNP [dm3] 2R_21047980_SNP [dm6]	A	G	1.305e^-4	0.712	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	16915925	2L_16915925_SNP [dm3] 2L_16915925_SNP [dm6]	A	G	1.308e^-4	0.712	SYNONYMOUS_CODING tweek
2L	20438418	2L_20438418_SNP [dm3] 2L_20438418_SNP [dm6]	T	C	1.313e^-4	0.712	UPSTREAM CR43607 INTRON CG31688 EXON CR43607
3R	3831486	3R_3831486_SNP [dm3] 3R_8005764_SNP [dm6]	C	A	1.318e^-4	0.712	NON_SYNONYMOUS_CODING CG2698 DOWNSTREAM CG2767 & 1 other
2R	12859934	2R_12859934_SNP [dm3] 2R_16972429_SNP [dm6]	T	A	1.320e^-4	0.712	DOWNSTREAM CR44377 INTERGENIC
X	10041442	X_10041442_DEL [dm3] X_10147409_DEL [dm6]	AA	A	1.320e^-4	0.712	INTRON CR44894 & 1 other
2L	16944697	2L_16944697_DEL [dm3] 2L_16944697_DEL [dm6]	CGG	C	1.334e^-4	0.712	DOWNSTREAM CR43053 INTERGENIC
2R	18516585	2R_18516585_SNP [dm3] 2R_22629080_SNP [dm6]	G	A	1.336e^-4	0.712	INTRON CG33143
3L	10389807	3L_10389807_SNP [dm3] 3L_10396707_SNP [dm6]	A	G	1.343e^-4	0.712	INTERGENIC
X	5483662	X_5483662_SNP [dm3] X_5589629_SNP [dm6]	G	A	1.345e^-4	0.712	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1870844	2L_1870844_SNP [dm3] 2L_1870844_SNP [dm6]	G	A	1.349e^-4	0.712	UTR_3_PRIME CG7295 INTRON CG31663
2L	11200154	2L_11200154_SNP [dm3] 2L_11200154_SNP [dm6]	C	T	1.354e^-4	0.712	INTRON Ca-beta
3L	7724585	3L_7724585_SNP [dm3] 3L_7731485_SNP [dm6]	C	T	1.356e^-4	0.712	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	19201268	X_19201268_SNP [dm3] X_19307235_SNP [dm6]	C	A	1.358e^-4	0.712	INTRON CG8051
2R	5862613	2R_5862613_SNP [dm3] 2R_9975108_SNP [dm6]	G	A	1.364e^-4	0.712	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	10532079	3L_10532079_SNP [dm3] 3L_10538979_SNP [dm6]	C	A	1.365e^-4	0.712	INTRON A2bp1
X	18986147	X_18986147_SNP [dm3] X_19092114_SNP [dm6]	T	A	1.366e^-4	0.712	INTERGENIC
2L	15139763	2L_15139763_SNP [dm3] 2L_15139763_SNP [dm6]	G	T	1.367e^-4	0.712	INTERGENIC
2L	7271024	2L_7271024_SNP [dm3] 2L_7271024_SNP [dm6]	G	T	1.370e^-4	0.712	INTRON Wnt4
2L	11610257	2L_11610257_SNP [dm3] 2L_11610257_SNP [dm6]	G	T	1.370e^-4	0.712	DOWNSTREAM spag4 INTRON kek2
3R	9902705	3R_9902705_SNP [dm3] 3R_14076983_SNP [dm6]	T	A	1.373e^-4	0.712	INTRON foxo
3L	11822725	3L_11822725_SNP [dm3] 3L_11829625_SNP [dm6]	A	C	1.375e^-4	0.712	SYNONYMOUS_CODING CG7264 INTRON CycA
2L	13443018	2L_13443018_SNP [dm3] 2L_13443018_SNP [dm6]	G	C	1.380e^-4	0.712	UPSTREAM CR45683 INTRON CG42784	TF binding site mE1_TFBS_cad
3L	10558049	3L_10558049_SNP [dm3] 3L_10564949_SNP [dm6]	G	A	1.383e^-4	0.712	INTRON A2bp1
2L	5539614	2L_5539614_SNP [dm3] 2L_5539614_SNP [dm6]	A	T	1.384e^-4	0.712	UTR_3_PRIME Hel25E UPSTREAM CG14015
2L	120639	2L_120639_INS [dm3] 2L_120639_INS [dm6]	C	CA	1.385e^-4	0.712	UTR_5_PRIME CG4822 UPSTREAM CG4822 INTRON CG11455 & 1 other
2R	16573867	2R_16573867_SNP [dm3] 2R_20686362_SNP [dm6]	A	T	1.387e^-4	0.712	SYNONYMOUS_CODING Gr57a
3R	25251485	3R_25251485_SNP [dm3] 3R_29425763_SNP [dm6]	C	T	1.388e^-4	0.712	INTRON Ptp99A
3L	13516181	3L_13516181_SNP [dm3] 3L_13523081_SNP [dm6]	T	A	1.392e^-4	0.712	UTR_3_PRIME bru-3
3L	12967342	3L_12967342_SNP [dm3] 3L_12974242_SNP [dm6]	T	G	1.397e^-4	0.712	DOWNSTREAM CG10749 INTERGENIC
2R	18516749	2R_18516749_SNP [dm3] 2R_22629244_SNP [dm6]	A	G	1.397e^-4	0.712	INTRON CG33143	TF binding site mE1_TFBS_chinmo
2R	16104484	2R_16104484_SNP [dm3] 2R_20216979_SNP [dm6]	G	A	1.398e^-4	0.712	INTERGENIC
3L	1412397	3L_1412397_SNP [dm3] 3L_1412397_SNP [dm6]	C	A	1.414e^-4	0.712	SYNONYMOUS_CODING CG9168 INTRON Ptp61F
2L	6092407	2L_6092407_SNP [dm3] 2L_6092407_SNP [dm6]	G	C	1.414e^-4	0.712	INTRON Kr-h1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	12646988	2R_12646988_SNP [dm3] 2R_16759483_SNP [dm6]	A	G	1.422e^-4	0.712	INTRON unc-104
2R	12847385	2R_12847385_SNP [dm3] 2R_16959880_SNP [dm6]	G	A	1.432e^-4	0.712	SYNONYMOUS_CODING CG9010 DOWNSTREAM CG6665
3L	14973147	3L_14973147_SNP [dm3] 3L_14980047_SNP [dm6]	A	G	1.434e^-4	0.712	INTRON CG3349	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sbb
2L	5264688	2L_5264688_SNP [dm3] 2L_5264688_SNP [dm6]	T	C	1.436e^-4	0.712	SPLICE_SITE_REGION Cyp4ac1 INTRON tkv & 1 other
X	5974058	X_5974058_SNP [dm3] X_6080025_SNP [dm6]	C	T	1.440e^-4	0.712	INTRON CG4660	TF binding site BDTNP1_TFBS_dl
2L	6237484	2L_6237484_SNP [dm3] 2L_6237484_SNP [dm6]	A	C	1.443e^-4	0.712	INTERGENIC
3L	11822576	3L_11822576_SNP [dm3] 3L_11829476_SNP [dm6]	C	T	1.450e^-4	0.712	SYNONYMOUS_CODING CG7264 INTRON CycA
3L	10532063	3L_10532063_DEL [dm3] 3L_10538963_DEL [dm6]	ACTTACT	A	1.452e^-4	0.712	INTRON A2bp1
2R	18580605	2R_18580605_DEL [dm3] 2R_22693100_DEL [dm6]	TATCCACAGCTCGTAT...	C	1.457e^-4	0.712	UTR_3_PRIME robo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10510394	3R_10510394_SNP [dm3] 3R_14684672_SNP [dm6]	G	C	1.459e^-4	0.712	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
3R	21722833	3R_21722833_SNP [dm3] 3R_25897111_SNP [dm6]	T	G	1.465e^-4	0.712	UTR_3_PRIME CG5948 UPSTREAM MCO3
3L	20455706	3L_20455706_SNP [dm3] 3L_20462606_SNP [dm6]	C	A	1.474e^-4	0.712	DOWNSTREAM mag INTRON CG5195
2L	9203173	2L_9203173_SNP [dm3] 2L_9203173_SNP [dm6]	G	A	1.477e^-4	0.712	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	5826396	2R_5826396_SNP [dm3] 2R_9938891_SNP [dm6]	A	T	1.482e^-4	0.712	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	21842533	3R_21842533_SNP [dm3] 3R_26016811_SNP [dm6]	G	A	1.486e^-4	0.712	SYNONYMOUS_CODING E_spl_m2-BFM DOWNSTREAM Kaz-m1 & 1 other	TF binding site BDTNP1_TFBS_da
3R	21842536	3R_21842536_SNP [dm3] 3R_26016814_SNP [dm6]	C	G	1.486e^-4	0.712	SYNONYMOUS_CODING E_spl_m2-BFM DOWNSTREAM Kaz-m1 & 1 other	TF binding site BDTNP1_TFBS_da
2L	9046794	2L_9046794_SNP [dm3] 2L_9046794_SNP [dm6]	T	C	1.488e^-4	0.712	INTERGENIC
2L	1943879	2L_1943879_DEL [dm3] 2L_1943879_DEL [dm6]	CAG	A	1.488e^-4	0.712	UTR_3_PRIME CG7337 DOWNSTREAM CG7337
3R	11574121	3R_11574121_DEL [dm3] 3R_15748399_DEL [dm6]	ACATCATTCACAGAGCCA...	A	1.497e^-4	0.712	INTERGENIC
2R	14529307	2R_14529307_SNP [dm3] 2R_18641802_SNP [dm6]	A	G	1.498e^-4	0.712	SPLICE_SITE_REGION SP2637 DOWNSTREAM CheA56a INTRON SP2637	TF binding site mE1_TFBS_cad
3L	10532113	3L_10532113_SNP [dm3] 3L_10539013_SNP [dm6]	A	C	1.508e^-4	0.712	INTRON A2bp1
2L	10465602	2L_10465602_SNP [dm3] 2L_10465602_SNP [dm6]	A	G	1.509e^-4	0.712	INTRON RluA-1
2L	10465606	2L_10465606_SNP [dm3] 2L_10465606_SNP [dm6]	C	G	1.509e^-4	0.712	INTRON RluA-1
2R	5858509	2R_5858509_SNP [dm3] 2R_9971004_SNP [dm6]	T	A	1.512e^-4	0.712	UPSTREAM CG12134 DOWNSTREAM Adam INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	15137897	2L_15137897_SNP [dm3] 2L_15137897_SNP [dm6]	T	G	1.518e^-4	0.712	INTERGENIC
2L	1513600	2L_1513600_SNP [dm3] 2L_1513600_SNP [dm6]	A	T	1.519e^-4	0.712	INTERGENIC
3L	741987	3L_741987_SNP [dm3] 3L_741987_SNP [dm6]	C	G	1.522e^-4	0.712	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10582511	2L_10582511_SNP [dm3] 2L_10582511_SNP [dm6]	A	T	1.528e^-4	0.712	UPSTREAM CG34161 INTRON Trim9
3R	11230472	3R_11230472_SNP [dm3] 3R_15404750_SNP [dm6]	T	C	1.531e^-4	0.712	SYNONYMOUS_CODING CG6125	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11336934	3L_11336934_SNP [dm3] 3L_11343834_SNP [dm6]	T	C	1.532e^-4	0.712	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA
3L	8087616	3L_8087616_SNP [dm3] 3L_8094516_SNP [dm6]	A	T	1.534e^-4	0.712	INTRON Ect4
2L	12680725	2L_12680725_SNP [dm3] 2L_12680725_SNP [dm6]	A	G	1.534e^-4	0.712	INTRON pdm2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14838992	3R_14838992_SNP [dm3] 3R_19013270_SNP [dm6]	C	T	1.551e^-4	0.712	SYNONYMOUS_CODING gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	13292343	X_13292343_SNP [dm3] X_13398310_SNP [dm6]	A	G	1.551e^-4	0.712	INTRON CG1673
3L	20976307	3L_20976307_SNP [dm3] 3L_20983207_SNP [dm6]	G	A	1.553e^-4	0.712	INTERGENIC
2R	19915453	2R_19915453_SNP [dm3] 2R_24027930_SNP [dm6]	T	C	1.555e^-4	0.712	UTR_3_PRIME HSPC300 DOWNSTREAM HSPC300 & 1 other
2L	13061567	2L_13061567_SNP [dm3] 2L_13061567_SNP [dm6]	C	T	1.558e^-4	0.712	INTERGENIC
2R	20562698	2R_20562698_SNP [dm3] 2R_24675175_SNP [dm6]	A	G	1.564e^-4	0.712	INTRON Mmp1	TF binding site mE1_TFBS_cad
2R	4910397	2R_4910397_SNP [dm3] 2R_9022892_SNP [dm6]	A	C	1.565e^-4	0.712	SYNONYMOUS_CODING CG8170	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14843632	3L_14843632_SNP [dm3] 3L_14850532_SNP [dm6]	A	G	1.576e^-4	0.712	INTRON CG17839
2R	8840116	2R_8840116_SNP [dm3] 2R_12952611_SNP [dm6]	A	G	1.585e^-4	0.712	UPSTREAM CG13321 & 2 others INTERGENIC
2L	4516472	2L_4516472_SNP [dm3] 2L_4516472_SNP [dm6]	G	A	1.593e^-4	0.712	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	1610994	X_1610994_SNP [dm3] X_1716961_SNP [dm6]	G	A	1.593e^-4	0.712	INTERGENIC
3L	12967347	3L_12967347_SNP [dm3] 3L_12974247_SNP [dm6]	C	A	1.596e^-4	0.712	DOWNSTREAM CG10749 INTERGENIC
3R	17462385	3R_17462385_SNP [dm3] 3R_21636663_SNP [dm6]	A	G	1.600e^-4	0.712	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	11510781	3L_11510781_SNP [dm3] 3L_11517681_SNP [dm6]	T	G	1.601e^-4	0.712	NON_SYNONYMOUS_CODING CG7512	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	10551063	2L_10551063_SNP [dm3] 2L_10551063_SNP [dm6]	C	T	1.601e^-4	0.712	INTRON Trim9
3L	14227628	3L_14227628_SNP [dm3] 3L_14234528_SNP [dm6]	C	T	1.605e^-4	0.712	UTR_3_PRIME CG7924 DOWNSTREAM CG34244	TF binding site mE1_TFBS_cad
2L	10551065	2L_10551065_SNP [dm3] 2L_10551065_SNP [dm6]	T	C	1.607e^-4	0.712	INTRON Trim9
2R	9437086	2R_9437086_SNP [dm3] 2R_13549581_SNP [dm6]	C	A	1.609e^-4	0.712	INTRON CG33156	TF binding site mE1_TFBS_inv
3L	6792307	3L_6792307_SNP [dm3] 3L_6799207_SNP [dm6]	A	G	1.618e^-4	0.712	INTERGENIC	enhancer mE1_CBP_Enhancers
2R	9429332	2R_9429332_SNP [dm3] 2R_13541827_SNP [dm6]	G	T	1.619e^-4	0.712	INTRON CG6145	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	4843706	2L_4843706_SNP [dm3] 2L_4843706_SNP [dm6]	T	C	1.620e^-4	0.712	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	17882202	2L_17882202_SNP [dm3] 2L_17882202_SNP [dm6]	T	C	1.635e^-4	0.712	INTERGENIC
2R	19107548	2R_19107548_SNP [dm3] 2R_23220025_SNP [dm6]	G	C	1.637e^-4	0.712	INTERGENIC
3L	6488513	3L_6488513_SNP [dm3] 3L_6495413_SNP [dm6]	G	C	1.637e^-4	0.712	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
2R	11998624	2R_11998624_INS [dm3] 2R_16111119_INS [dm6]	T	CCTCTC	1.638e^-4	0.712	INTRON Asph	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22518824	3R_22518824_SNP [dm3] 3R_26693102_SNP [dm6]	C	T	1.640e^-4	0.712	SYNONYMOUS_CODING TwdlQ	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8139374	2L_8139374_SNP [dm3] 2L_8139374_SNP [dm6]	C	G	1.645e^-4	0.712	NON_SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
3L	6488515	3L_6488515_SNP [dm3] 3L_6495415_SNP [dm6]	G	A	1.649e^-4	0.712	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
2R	6468475	2R_6468475_DEL [dm3] 2R_10580970_DEL [dm6]	AAATATATG	A	1.651e^-4	0.712	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	5220472	3L_5220472_SNP [dm3] 3L_5227372_SNP [dm6]	C	A	1.652e^-4	0.712	INTRON shep
3R	26199625	3R_26199625_SNP [dm3] 3R_30373903_SNP [dm6]	G	T	1.659e^-4	0.712	INTERGENIC
2R	16072489	2R_16072489_SNP [dm3] 2R_20184984_SNP [dm6]	G	T	1.660e^-4	0.712	INTERGENIC
2L	5349376	2L_5349376_SNP [dm3] 2L_5349376_SNP [dm6]	T	G	1.665e^-4	0.712	INTRON nompC
2L	446629	2L_446629_DEL [dm3] 2L_446629_DEL [dm6]	CT	C	1.665e^-4	0.712	INTRON ex	TF binding site mE1_TFBS_chinmo
3L	10186724	3L_10186724_SNP [dm3] 3L_10193624_SNP [dm6]	T	C	1.667e^-4	0.712	UTR_3_PRIME ect INTRON ect	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19654144	2R_19654144_SNP [dm3] 2R_23766621_SNP [dm6]	T	C	1.667e^-4	0.712	INTRON CG9850
X	18024886	X_18024886_SNP [dm3] X_18130853_SNP [dm6]	T	A	1.674e^-4	0.712	UTR_3_PRIME ari-1 UPSTREAM CG43133 DOWNSTREAM ari-1
3R	8438046	3R_8438046_SNP [dm3] 3R_12612324_SNP [dm6]	G	T	1.678e^-4	0.712	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	11938984	2L_11938984_SNP [dm3] 2L_11938984_SNP [dm6]	T	G	1.681e^-4	0.712	NON_SYNONYMOUS_CODING Or33c	TF binding site mE1_TFBS_cad
3R	12046172	3R_12046172_SNP [dm3] 3R_16220450_SNP [dm6]	G	A	1.688e^-4	0.712	INTERGENIC
X	13292345	X_13292345_SNP [dm3] X_13398312_SNP [dm6]	G	A	1.689e^-4	0.712	INTRON CG1673
2L	17089175	2L_17089175_SNP [dm3] 2L_17089175_SNP [dm6]	T	C	1.689e^-4	0.712	UTR_3_PRIME CG12620 DOWNSTREAM CG12620
2L	15137864	2L_15137864_SNP [dm3] 2L_15137864_SNP [dm6]	T	G	1.689e^-4	0.712	INTERGENIC
X	22269190	X_22269190_SNP [dm3] X_22867354_SNP [dm6]	T	A	1.690e^-4	0.712	INTRON CG42346	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	6000969	2L_6000969_SNP [dm3] 2L_6000969_SNP [dm6]	T	C	1.692e^-4	0.712	SYNONYMOUS_CODING Tsp26A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5855897	2L_5855897_SNP [dm3] 2L_5855897_SNP [dm6]	C	T	1.706e^-4	0.715	INTRON TrissinR
3R	27212638	3R_27212638_SNP [dm3] 3R_31386916_SNP [dm6]	A	T	1.707e^-4	0.715	INTRON CG1607
3L	14647028	3L_14647028_SNP [dm3] 3L_14653928_SNP [dm6]	T	C	1.728e^-4	0.721	INTRON dlp
2R	12063889	2R_12063889_SNP [dm3] 2R_16176384_SNP [dm6]	T	A	1.730e^-4	0.721	INTRON Ptp52F
2R	10689731	2R_10689731_DEL [dm3] 2R_14802226_DEL [dm6]	GG	G	1.745e^-4	0.724	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16482589	2L_16482589_SNP [dm3] 2L_16482589_SNP [dm6]	T	A	1.747e^-4	0.724	INTRON dac	regulatory region REDfly_CRMs
3R	22220380	3R_22220380_SNP [dm3] 3R_26394658_SNP [dm6]	A	G	1.759e^-4	0.724	INTERGENIC
2R	19915423	2R_19915423_SNP [dm3] 2R_24027900_SNP [dm6]	G	A	1.762e^-4	0.724	UTR_3_PRIME HSPC300 DOWNSTREAM HSPC300 & 1 other
2L	4184364	2L_4184364_SNP [dm3] 2L_4184364_SNP [dm6]	T	C	1.766e^-4	0.724	INTERGENIC
3R	15332427	3R_15332427_SNP [dm3] 3R_19506705_SNP [dm6]	G	A	1.771e^-4	0.724	SYNONYMOUS_CODING Dys
X	17680893	X_17680893_SNP [dm3] X_17786860_SNP [dm6]	A	G	1.774e^-4	0.724	INTERGENIC
3R	16325192	3R_16325192_SNP [dm3] 3R_20499470_SNP [dm6]	T	C	1.775e^-4	0.724	DOWNSTREAM Dic2 INTERGENIC
2R	12256328	2R_12256328_SNP [dm3] 2R_16368823_SNP [dm6]	T	A	1.778e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_inv
3L	1548957	3L_1548957_SNP [dm3] 3L_1548957_SNP [dm6]	G	A	1.779e^-4	0.724	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11336731	3L_11336731_SNP [dm3] 3L_11343631_SNP [dm6]	C	T	1.785e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA
2R	13624545	2R_13624545_DEL [dm3] 2R_17737040_DEL [dm6]	AG	A	1.797e^-4	0.724	SPLICE_SITE_REGION CG6406 DOWNSTREAM CG6401 INTRON CG6406	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	11173731	2L_11173731_SNP [dm3] 2L_11173731_SNP [dm6]	A	C	1.803e^-4	0.724	INTRON Ca-beta	TF binding site mE1_TFBS_HSA
3L	6792332	3L_6792332_SNP [dm3] 3L_6799232_SNP [dm6]	C	T	1.806e^-4	0.724	INTERGENIC	enhancer mE1_CBP_Enhancers
3R	11574034	3R_11574034_SNP [dm3] 3R_15748312_SNP [dm6]	A	G	1.807e^-4	0.724	INTERGENIC
3L	1323551	3L_1323551_SNP [dm3] 3L_1323551_SNP [dm6]	C	T	1.808e^-4	0.724	UPSTREAM CG9184 INTRON Myo61F EXON CR45166	TF binding site mE1_TFBS_HSA
3L	11838128	3L_11838128_SNP [dm3] 3L_11845028_SNP [dm6]	C	T	1.812e^-4	0.724	INTERGENIC
2L	464034	2L_464034_SNP [dm3] 2L_464034_SNP [dm6]	C	A	1.822e^-4	0.724	SYNONYMOUS_CODING CG4297	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4843704	2L_4843704_SNP [dm3] 2L_4843704_SNP [dm6]	G	C	1.829e^-4	0.724	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	12046210	3R_12046210_SNP [dm3] 3R_16220488_SNP [dm6]	G	A	1.841e^-4	0.724	INTERGENIC
3L	6488561	3L_6488561_SNP [dm3] 3L_6495461_SNP [dm6]	C	G	1.858e^-4	0.724	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
3L	9526504	3L_9526504_SNP [dm3] 3L_9533404_SNP [dm6]	A	G	1.863e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4337080	3L_4337080_SNP [dm3] 3L_4337080_SNP [dm6]	G	A	1.871e^-4	0.724	INTRON Cip4
3R	14153920	3R_14153920_SNP [dm3] 3R_18328198_SNP [dm6]	C	T	1.872e^-4	0.724	INTRON CG31235
2L	16952841	2L_16952841_SNP [dm3] 2L_16952841_SNP [dm6]	T	G	1.886e^-4	0.724	INTERGENIC
3R	25353759	3R_25353759_DEL [dm3] 3R_29528037_DEL [dm6]	ACCCATATTT	A	1.888e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12659163	3L_12659163_SNP [dm3] 3L_12666063_SNP [dm6]	C	A	1.892e^-4	0.724	INTERGENIC
3R	23187682	3R_23187682_SNP [dm3] 3R_27361960_SNP [dm6]	T	C	1.895e^-4	0.724	SYNONYMOUS_CODING CG42534	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16539784	3L_16539784_SNP [dm3] 3L_16546684_SNP [dm6]	A	T	1.895e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_cnc
X	3135589	X_3135589_SNP [dm3] X_3241556_SNP [dm6]	A	G	1.899e^-4	0.724	UTR_3_PRIME ng3 UPSTREAM ng2 & 1 other INTRON dnc
2R	12584774	2R_12584774_SNP [dm3] 2R_16697269_SNP [dm6]	C	G	1.903e^-4	0.724	INTRON CG30463
3R	1750485	3R_1750485_SNP [dm3] 3R_5924763_SNP [dm6]	C	A	1.913e^-4	0.724	INTRON CG34113
3R	16325008	3R_16325008_SNP [dm3] 3R_20499286_SNP [dm6]	G	A	1.916e^-4	0.724	DOWNSTREAM Dic2 INTERGENIC
X	6561142	X_6561142_SNP [dm3] X_6667109_SNP [dm6]	A	G	1.920e^-4	0.724	UTR_3_PRIME Ctr1A
3R	23210491	3R_23210491_SNP [dm3] 3R_27384769_SNP [dm6]	G	T	1.920e^-4	0.724	INTRON side
3R	12952395	3R_12952395_SNP [dm3] 3R_17126673_SNP [dm6]	G	A	1.922e^-4	0.724	SYNONYMOUS_CODING CG17477 UPSTREAM CG31269 DOWNSTREAM CR44238	TF binding site mE1_TFBS_inv
2L	5693278	2L_5693278_SNP [dm3] 2L_5693278_SNP [dm6]	A	G	1.929e^-4	0.724	INTERGENIC
2R	20832455	2R_20832455_SNP [dm3] 2R_24944932_SNP [dm6]	A	T	1.940e^-4	0.724	UPSTREAM CG3770 & 1 other INTRON CG15861	TF binding site mE1_TFBS_Trl
2R	10775901	2R_10775901_SNP [dm3] 2R_14888396_SNP [dm6]	C	T	1.943e^-4	0.724	SYNONYMOUS_CODING Cyp6a8
2L	13136215	2L_13136215_SNP [dm3] 2L_13136215_SNP [dm6]	G	A	1.944e^-4	0.724	INTERGENIC
2L	10524841	2L_10524841_SNP [dm3] 2L_10524841_SNP [dm6]	G	A	1.949e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	14807940	3R_14807940_SNP [dm3] 3R_18982218_SNP [dm6]	T	C	1.949e^-4	0.724	SYNONYMOUS_CODING dnk UPSTREAM Smu1 DOWNSTREAM snRNP-U1-C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14210177	2L_14210177_SNP [dm3] 2L_14210177_SNP [dm6]	C	T	1.962e^-4	0.724	INTRON Dyrk2
3R	14838998	3R_14838998_SNP [dm3] 3R_19013276_SNP [dm6]	C	G	1.965e^-4	0.724	SYNONYMOUS_CODING gukh	TF binding site mE1_TFBS_cad
2L	6552420	2L_6552420_DEL [dm3] 2L_6552420_DEL [dm6]	ACATA	A	1.977e^-4	0.724	EXON CR44776
3R	25353813	3R_25353813_SNP [dm3] 3R_29528091_SNP [dm6]	T	C	1.982e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3656490	3L_3656490_SNP [dm3] 3L_3656490_SNP [dm6]	C	A	1.986e^-4	0.724	INTERGENIC
2R	13632095	2R_13632095_SNP [dm3] 2R_17744590_SNP [dm6]	T	G	1.987e^-4	0.724	NON_SYNONYMOUS_CODING Ir54a DOWNSTREAM CG4996 & 1 other	TF binding site mE1_TFBS_sens
2L	6001044	2L_6001044_SNP [dm3] 2L_6001044_SNP [dm6]	G	A	1.993e^-4	0.724	SYNONYMOUS_CODING Tsp26A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20275624	3R_20275624_SNP [dm3] 3R_24449902_SNP [dm6]	T	A	1.995e^-4	0.724	INTRON nAChRalpha1
2L	4843699	2L_4843699_SNP [dm3] 2L_4843699_SNP [dm6]	A	G	1.996e^-4	0.724	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	14886962	3L_14886962_SNP [dm3] 3L_14893862_SNP [dm6]	A	G	1.999e^-4	0.724	SYNONYMOUS_CODING CG34245
X	16978790	X_16978790_SNP [dm3] X_17084757_SNP [dm6]	C	T	2.001e^-4	0.724	INTRON CG8945
2L	10465626	2L_10465626_SNP [dm3] 2L_10465626_SNP [dm6]	T	G	2.003e^-4	0.724	INTRON RluA-1
3L	14973168	3L_14973168_SNP [dm3] 3L_14980068_SNP [dm6]	A	T	2.004e^-4	0.724	INTRON CG3349	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sbb
2R	8827603	2R_8827603_SNP [dm3] 2R_12940098_SNP [dm6]	A	C	2.005e^-4	0.724	DOWNSTREAM Mdr49 INTRON Sans	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8827609	2R_8827609_SNP [dm3] 2R_12940104_SNP [dm6]	G	A	2.005e^-4	0.724	DOWNSTREAM Mdr49 INTRON Sans	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14861969	3L_14861969_SNP [dm3] 3L_14868869_SNP [dm6]	G	A	2.005e^-4	0.724	INTRON CG17839
2R	12035674	2R_12035674_SNP [dm3] 2R_16148169_SNP [dm6]	G	C	2.010e^-4	0.724	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_sens
3L	11342467	3L_11342467_SNP [dm3] 3L_11349367_SNP [dm6]	G	A	2.017e^-4	0.724	DOWNSTREAM CR45251 INTERGENIC
2L	8191121	2L_8191121_SNP [dm3] 2L_8191121_SNP [dm6]	A	G	2.029e^-4	0.724	UTR_3_PRIME CG8475 UPSTREAM CG34134 DOWNSTREAM Piezo	TF binding site mE1_TFBS_cad
2L	12684735	2L_12684735_SNP [dm3] 2L_12684735_SNP [dm6]	C	G	2.030e^-4	0.724	NON_SYNONYMOUS_CODING pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14699239	2L_14699239_SNP [dm3] 2L_14699239_SNP [dm6]	T	G	2.031e^-4	0.724	INTERGENIC
3L	7083178	3L_7083178_DEL [dm3] 3L_7090078_DEL [dm6]	ATTTGTCCAGAGCCCCAATA...	A	2.048e^-4	0.724	INTERGENIC
2R	5826398	2R_5826398_SNP [dm3] 2R_9938893_SNP [dm6]	C	A	2.048e^-4	0.724	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	8841080	2R_8841080_SNP [dm3] 2R_12953575_SNP [dm6]	C	T	2.050e^-4	0.724	UTR_5_PRIME CG13321	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10537453	3L_10537453_SNP [dm3] 3L_10544353_SNP [dm6]	T	C	2.052e^-4	0.724	INTRON A2bp1
2R	16766680	2R_16766680_SNP [dm3] 2R_20879175_SNP [dm6]	G	A	2.053e^-4	0.724	UPSTREAM Cib2 DOWNSTREAM Ipk1 INTERGENIC
2R	9044730	2R_9044730_SNP [dm3] 2R_13157225_SNP [dm6]	G	C	2.054e^-4	0.724	SYNONYMOUS_CODING TppII
X	6561126	X_6561126_SNP [dm3] X_6667093_SNP [dm6]	C	A	2.055e^-4	0.724	UTR_3_PRIME Ctr1A
2R	14892693	2R_14892693_SNP [dm3] 2R_19005188_SNP [dm6]	A	T	2.059e^-4	0.724	INTRON tn
2L	9737991	2L_9737991_SNP [dm3] 2L_9737991_SNP [dm6]	A	C	2.060e^-4	0.724	DOWNSTREAM CG13117 INTRON Nckx30C
2L	17089381	2L_17089381_SNP [dm3] 2L_17089381_SNP [dm6]	A	T	2.060e^-4	0.724	DOWNSTREAM CG12620 INTERGENIC
X	5483671	X_5483671_SNP [dm3] X_5589638_SNP [dm6]	C	A	2.063e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13011831	X_13011831_INS [dm3] X_13117798_INS [dm6]	A	ACTCTTTTTGTGTGACTACA...	2.067e^-4	0.724	INTRON CG42237
X	1611948	X_1611948_SNP [dm3] X_1717915_SNP [dm6]	G	A	2.070e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	6593907	2L_6593907_SNP [dm3] 2L_6593907_SNP [dm6]	G	A	2.073e^-4	0.724	INTRON CG11319
2L	73974	2L_73974_SNP [dm3] 2L_73974_SNP [dm6]	A	G	2.075e^-4	0.724	UPSTREAM galectin & 1 other INTRON galectin
3R	21433084	3R_21433084_SNP [dm3] 3R_25607362_SNP [dm6]	T	C	2.081e^-4	0.724	UTR_3_PRIME msi INTRON ymp
2L	16944772	2L_16944772_SNP [dm3] 2L_16944772_SNP [dm6]	G	A	2.083e^-4	0.724	EXON CR43053
3R	22515077	3R_22515077_SNP [dm3] 3R_26689355_SNP [dm6]	A	G	2.096e^-4	0.724	INTERGENIC
2L	10465623	2L_10465623_INS [dm3] 2L_10465623_INS [dm6]	G	GTAA	2.099e^-4	0.724	INTRON RluA-1
2L	10672183	2L_10672183_SNP [dm3] 2L_10672183_SNP [dm6]	A	G	2.099e^-4	0.724	DOWNSTREAM CG31871 INTERGENIC
2L	16953954	2L_16953954_SNP [dm3] 2L_16953954_SNP [dm6]	T	A	2.100e^-4	0.724	INTERGENIC
3L	8036280	3L_8036280_SNP [dm3] 3L_8043180_SNP [dm6]	C	A	2.101e^-4	0.724	INTRON nmo
2R	19779994	2R_19779994_SNP [dm3] 2R_23892471_SNP [dm6]	C	A	2.101e^-4	0.724	DOWNSTREAM Upf3 INTRON DNA-ligI	TF binding site mE1_TFBS_sens
2L	6106251	2L_6106251_SNP [dm3] 2L_6106251_SNP [dm6]	A	T	2.103e^-4	0.724	INTRON stai
2R	5826508	2R_5826508_SNP [dm3] 2R_9939003_SNP [dm6]	C	G	2.109e^-4	0.724	INTRON Mef2	regulatory region REDfly_CRMs
3R	11242370	3R_11242370_SNP [dm3] 3R_15416648_SNP [dm6]	C	T	2.114e^-4	0.724	UTR_3_PRIME Atx2 DOWNSTREAM Atx2 & 2 others
3L	6488479	3L_6488479_SNP [dm3] 3L_6495379_SNP [dm6]	C	T	2.116e^-4	0.724	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
2L	9046765	2L_9046765_SNP [dm3] 2L_9046765_SNP [dm6]	A	C	2.129e^-4	0.724	INTERGENIC
3R	14051423	3R_14051423_SNP [dm3] 3R_18225701_SNP [dm6]	A	T	2.131e^-4	0.724	UPSTREAM Mdh2 DOWNSTREAM CG7993 INTRON CG7168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22745959	3R_22745959_SNP [dm3] 3R_26920237_SNP [dm6]	C	T	2.134e^-4	0.724	INTRON sda
2R	17062679	2R_17062679_SNP [dm3] 2R_21175174_SNP [dm6]	C	T	2.136e^-4	0.724	UPSTREAM Pu DOWNSTREAM Xpd INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	43102	2L_43102_SNP [dm3] 2L_43102_SNP [dm6]	A	G	2.136e^-4	0.724	INTRON Cda5	TF binding site BDTNP1_TFBS_dl
2L	13036150	2L_13036150_SNP [dm3] 2L_13036150_SNP [dm6]	A	G	2.141e^-4	0.724	INTRON CG9932	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	8191122	2L_8191122_SNP [dm3] 2L_8191122_SNP [dm6]	G	A	2.143e^-4	0.724	UTR_3_PRIME CG8475 UPSTREAM CG34134 DOWNSTREAM Piezo	TF binding site mE1_TFBS_cad
2R	18419844	2R_18419844_SNP [dm3] 2R_22532339_SNP [dm6]	G	A	2.144e^-4	0.724	INTRON px	TF binding site mE1_TFBS_cad
X	12805364	X_12805364_SNP [dm3] X_12911331_SNP [dm6]	G	A	2.146e^-4	0.724	INTRON CG4645
2L	19577075	2L_19577075_SNP [dm3] 2L_19577075_SNP [dm6]	C	T	2.147e^-4	0.724	UPSTREAM msb1l INTRON spi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	17634872	2L_17634872_SNP [dm3] 2L_17634872_SNP [dm6]	T	A	2.152e^-4	0.724	INTERGENIC
3R	11001751	3R_11001751_SNP [dm3] 3R_15176029_SNP [dm6]	T	C	2.154e^-4	0.724	UTR_3_PRIME Mf INTRON Mf & 1 other
2R	19447437	2R_19447437_SNP [dm3] 2R_23559914_SNP [dm6]	A	C	2.165e^-4	0.724	SYNONYMOUS_CODING ItgalphaPS5 UPSTREAM Pi3K59F
2R	9429220	2R_9429220_SNP [dm3] 2R_13541715_SNP [dm6]	T	A	2.167e^-4	0.724	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	11178292	3L_11178292_SNP [dm3] 3L_11185192_SNP [dm6]	G	A	2.168e^-4	0.724	INTRON GlcAT-P
2R	18543292	2R_18543292_SNP [dm3] 2R_22655787_SNP [dm6]	G	A	2.168e^-4	0.724	UPSTREAM CG30196 DOWNSTREAM CG43325 INTRON CG43325 & 1 other EXON CR45268	TF binding site mE1_TFBS_cad
X	1540988	X_1540988_SNP [dm3] X_1646955_SNP [dm6]	C	T	2.185e^-4	0.724	INTRON Mur2B & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	14458577	2R_14458577_SNP [dm3] 2R_18571072_SNP [dm6]	C	A	2.191e^-4	0.724	INTRON GEFmeso
2L	12800357	2L_12800357_SNP [dm3] 2L_12800357_SNP [dm6]	A	G	2.191e^-4	0.724	INTERGENIC
X	8507590	X_8507590_DEL [dm3] X_8613557_DEL [dm6]	ATAAAATAATTACAGTTTTG...	CCTT	2.194e^-4	0.724	INTERGENIC
2R	17843141	2R_17843141_SNP [dm3] 2R_21955636_SNP [dm6]	A	T	2.199e^-4	0.724	UPSTREAM CG13494 INTERGENIC
3R	26199627	3R_26199627_SNP [dm3] 3R_30373905_SNP [dm6]	G	A	2.204e^-4	0.724	INTERGENIC
3L	6828133	3L_6828133_SNP [dm3] 3L_6835033_SNP [dm6]	G	C	2.206e^-4	0.724	INTERGENIC
2R	10688718	2R_10688718_SNP [dm3] 2R_14801213_SNP [dm6]	G	T	2.215e^-4	0.724	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
X	17680766	X_17680766_SNP [dm3] X_17786733_SNP [dm6]	C	T	2.223e^-4	0.724	INTERGENIC
2L	14208775	2L_14208775_SNP [dm3] 2L_14208775_SNP [dm6]	C	T	2.246e^-4	0.724	INTRON Dyrk2
3R	11311568	3R_11311568_SNP [dm3] 3R_15485846_SNP [dm6]	A	C	2.246e^-4	0.724	UPSTREAM CG5205 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
2R	18588945	2R_18588945_SNP [dm3] 2R_22701440_SNP [dm6]	C	A	2.249e^-4	0.724	UTR_3_PRIME CG30259 UPSTREAM robo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn
2L	10582500	2L_10582500_SNP [dm3] 2L_10582500_SNP [dm6]	T	G	2.250e^-4	0.724	UPSTREAM CG34161 INTRON Trim9
2L	5762	2L_5762_SNP [dm3] 2L_5762_SNP [dm6]	T	C	2.253e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18518143	2R_18518143_SNP [dm3] 2R_22630638_SNP [dm6]	C	A	2.254e^-4	0.724	INTRON CG33143	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10529892	2L_10529892_SNP [dm3] 2L_10529892_SNP [dm6]	G	T	2.266e^-4	0.724	INTRON Lip4
2L	11938974	2L_11938974_SNP [dm3] 2L_11938974_SNP [dm6]	A	G	2.268e^-4	0.724	SYNONYMOUS_CODING Or33c	TF binding site mE1_TFBS_cad
3L	12678489	3L_12678489_SNP [dm3] 3L_12685389_SNP [dm6]	C	A	2.272e^-4	0.724	INTERGENIC
2L	13033052	2L_13033052_SNP [dm3] 2L_13033052_SNP [dm6]	G	T	2.274e^-4	0.724	INTRON CG9932
3R	18835676	3R_18835676_SNP [dm3] 3R_23009954_SNP [dm6]	G	A	2.275e^-4	0.724	UPSTREAM CG34375 INTRON CG34375	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2098012	3R_2098012_SNP [dm3] 3R_6272290_SNP [dm6]	T	C	2.276e^-4	0.724	INTERGENIC
X	6881488	X_6881488_SNP [dm3] X_6987455_SNP [dm6]	T	A	2.283e^-4	0.724	DOWNSTREAM bou INTRON ogre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	4367115	X_4367115_SNP [dm3] X_4473082_SNP [dm6]	C	A	2.284e^-4	0.724	INTRON bi & 1 other	TF binding site mE1_TFBS_cad
2R	14266931	2R_14266931_SNP [dm3] 2R_18379426_SNP [dm6]	A	T	2.293e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16987242	2R_16987242_SNP [dm3] 2R_21099737_SNP [dm6]	C	T	2.298e^-4	0.724	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	15137902	2L_15137902_SNP [dm3] 2L_15137902_SNP [dm6]	A	T	2.308e^-4	0.724	INTERGENIC
3L	4740104	3L_4740104_SNP [dm3] 3L_4740104_SNP [dm6]	T	A	2.309e^-4	0.724	INTRON RhoGEF64C	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	12046187	3R_12046187_INS [dm3] 3R_16220465_INS [dm6]	A	AATGTAA	2.315e^-4	0.724	INTERGENIC
X	3031195	X_3031195_INS [dm3] X_3137162_INS [dm6]	A	AACCATCAA	2.318e^-4	0.724	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	11683527	3R_11683527_SNP [dm3] 3R_15857805_SNP [dm6]	A	C	2.324e^-4	0.724	UPSTREAM Hmt-1 DOWNSTREAM CG31183 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
X	1611231	X_1611231_SNP [dm3] X_1717198_SNP [dm6]	G	A	2.326e^-4	0.724	INTERGENIC
2L	17583629	2L_17583629_SNP [dm3] 2L_17583629_SNP [dm6]	C	T	2.331e^-4	0.724	UPSTREAM CR45111 INTERGENIC
3R	22371899	3R_22371899_SNP [dm3] 3R_26546177_SNP [dm6]	T	C	2.346e^-4	0.724	INTRON scrib
3L	11510951	3L_11510951_SNP [dm3] 3L_11517851_SNP [dm6]	C	A	2.346e^-4	0.724	SYNONYMOUS_CODING CG7512 DOWNSTREAM Fuca	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	22962028	3L_22962028_SNP [dm3] 3L_22968928_SNP [dm6]	A	T	2.349e^-4	0.724	INTERGENIC	transposable element FlyBase
3L	7818588	3L_7818588_SNP [dm3] 3L_7825488_SNP [dm6]	T	C	2.351e^-4	0.724	INTRON Pdp1
2L	16944749	2L_16944749_SNP [dm3] 2L_16944749_SNP [dm6]	A	C	2.353e^-4	0.724	EXON CR43053
3L	5229989	3L_5229989_SNP [dm3] 3L_5236889_SNP [dm6]	A	G	2.354e^-4	0.724	DOWNSTREAM CG4669 INTRON shep
3L	12008179	3L_12008179_SNP [dm3] 3L_12015079_SNP [dm6]	G	A	2.358e^-4	0.724	INTRON rols
3L	3026878	3L_3026878_SNP [dm3] 3L_3026878_SNP [dm6]	C	A	2.358e^-4	0.724	UPSTREAM aly INTERGENIC
2R	18589339	2R_18589339_SNP [dm3] 2R_22701834_SNP [dm6]	G	A	2.360e^-4	0.724	SYNONYMOUS_CODING CG30259 UPSTREAM robo & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	18416107	X_18416107_SNP [dm3] X_18522074_SNP [dm6]	C	T	2.363e^-4	0.724	NON_SYNONYMOUS_CODING CG6481 INTRON Bx
3L	8151391	3L_8151391_SNP [dm3] 3L_8158291_SNP [dm6]	T	A	2.364e^-4	0.724	INTRON CG42445
2L	2040090	2L_2040090_SNP [dm3] 2L_2040090_SNP [dm6]	C	T	2.364e^-4	0.724	SYNONYMOUS_CODING Su_dx_
3R	22739844	3R_22739844_SNP [dm3] 3R_26914122_SNP [dm6]	A	G	2.368e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6626834	X_6626834_SNP [dm3] X_6732801_SNP [dm6]	C	G	2.370e^-4	0.724	INTRON CG3168 EXON CR43461	TF binding site mE1_TFBS_zfh1
2L	7187869	2L_7187869_SNP [dm3] 2L_7187869_SNP [dm6]	G	T	2.380e^-4	0.724	INTRON CG4496	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	21998763	3R_21998763_DEL [dm3] 3R_26173041_DEL [dm6]	TT	T	2.383e^-4	0.724	INTRON CG31323
3R	22719820	3R_22719820_SNP [dm3] 3R_26894098_SNP [dm6]	T	C	2.389e^-4	0.724	INTRON T48	regulatory region REDfly_CRMs
X	9599027	X_9599027_SNP [dm3] X_9704994_SNP [dm6]	A	G	2.391e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9437526	2R_9437526_SNP [dm3] 2R_13550021_SNP [dm6]	T	C	2.395e^-4	0.724	NON_SYNONYMOUS_CODING CG33156 INTRON CG33156	TF binding site mE1_TFBS_inv
X	4367122	X_4367122_SNP [dm3] X_4473089_SNP [dm6]	A	T	2.398e^-4	0.724	INTRON bi & 1 other	TF binding site mE1_TFBS_cad
X	4367123	X_4367123_INS [dm3] X_4473090_INS [dm6]	T	TTATTACTT	2.398e^-4	0.724	INTRON bi & 1 other	TF binding site mE1_TFBS_cad
2L	16792592	2L_16792592_SNP [dm3] 2L_16792592_SNP [dm6]	G	A	2.399e^-4	0.724	NON_SYNONYMOUS_CODING CG17928
2L	8120648	2L_8120648_SNP [dm3] 2L_8120648_SNP [dm6]	G	A	2.411e^-4	0.724	INTRON mon2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4196349	2L_4196349_SNP [dm3] 2L_4196349_SNP [dm6]	G	A	2.413e^-4	0.724	INTRON CG3714	TF binding site mE1_TFBS_inv
X	21940341	X_21940341_SNP [dm3] X_22538505_SNP [dm6]	A	C	2.414e^-4	0.724	SYNONYMOUS_CODING CG17598 INTRON CG17600	TF binding site mE1_TFBS_chinmo
3L	10389826	3L_10389826_SNP [dm3] 3L_10396726_SNP [dm6]	T	A	2.420e^-4	0.724	INTERGENIC
2R	18419825	2R_18419825_DEL [dm3] 2R_22532320_DEL [dm6]	AA	A	2.430e^-4	0.724	INTRON px	TF binding site mE1_TFBS_cad
3L	8151392	3L_8151392_SNP [dm3] 3L_8158292_SNP [dm6]	T	G	2.431e^-4	0.724	INTRON CG42445
2R	8841060	2R_8841060_SNP [dm3] 2R_12953555_SNP [dm6]	C	A	2.438e^-4	0.724	UTR_5_PRIME CG13321	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8263	2L_8263_SNP [dm3] 2L_8263_SNP [dm6]	G	A	2.440e^-4	0.724	NON_SYNONYMOUS_CODING CG11023
X	22269166	X_22269166_SNP [dm3] X_22867330_SNP [dm6]	A	G	2.448e^-4	0.724	INTRON CG42346	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	10539453	2R_10539453_SNP [dm3] 2R_14651948_SNP [dm6]	A	G	2.449e^-4	0.724	INTERGENIC
2R	18518483	2R_18518483_INS [dm3] 2R_22630978_INS [dm6]	A	AA	2.456e^-4	0.724	INTRON CG33143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4079382	2L_4079382_SNP [dm3] 2L_4079382_SNP [dm6]	T	C	2.463e^-4	0.724	INTRON ed
3R	27004559	3R_27004559_SNP [dm3] 3R_31178837_SNP [dm6]	A	G	2.468e^-4	0.724	DOWNSTREAM Gycbeta100B & 1 other INTRON mesh
X	1610654	X_1610654_SNP [dm3] X_1716621_SNP [dm6]	A	G	2.482e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7951350	3L_7951350_SNP [dm3] 3L_7958250_SNP [dm6]	T	G	2.483e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5350981	2R_5350981_SNP [dm3] 2R_9463476_SNP [dm6]	A	C	2.485e^-4	0.724	UPSTREAM Camta INTRON Camta
3L	11336660	3L_11336660_SNP [dm3] 3L_11343560_SNP [dm6]	T	C	2.488e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA
X	1601052	X_1601052_SNP [dm3] X_1707019_SNP [dm6]	A	G	2.498e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	17985948	3R_17985948_SNP [dm3] 3R_22160226_SNP [dm6]	T	C	2.502e^-4	0.724	INTRON SKIP	TF binding site mE1_TFBS_Kr
2R	17843143	2R_17843143_SNP [dm3] 2R_21955638_SNP [dm6]	A	G	2.505e^-4	0.724	UPSTREAM CG13494 INTERGENIC
3L	10447467	3L_10447467_SNP [dm3] 3L_10454367_SNP [dm6]	C	T	2.505e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24034553	3R_24034553_DEL [dm3] 3R_28208831_DEL [dm6]	TCCGTTTGT	T	2.506e^-4	0.724	INTRON CG34354	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	17680888	X_17680888_SNP [dm3] X_17786855_SNP [dm6]	G	A	2.507e^-4	0.724	INTERGENIC
3L	11511196	3L_11511196_SNP [dm3] 3L_11518096_SNP [dm6]	G	C	2.511e^-4	0.724	SYNONYMOUS_CODING CG7512 DOWNSTREAM Fuca	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	6386603	3L_6386603_SNP [dm3] 3L_6393503_SNP [dm6]	A	G	2.515e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	9749411	2L_9749411_SNP [dm3] 2L_9749411_SNP [dm6]	A	T	2.520e^-4	0.724	NON_SYNONYMOUS_CODING Cyp4e3
X	22182524	X_22182524_SNP [dm3] X_22780688_SNP [dm6]	T	C	2.521e^-4	0.724	INTRON CR44997	transposable element FlyBase
2R	18515857	2R_18515857_SNP [dm3] 2R_22628352_SNP [dm6]	T	C	2.521e^-4	0.724	INTRON CG33143
2R	20562696	2R_20562696_SNP [dm3] 2R_24675173_SNP [dm6]	T	C	2.540e^-4	0.724	INTRON Mmp1	TF binding site mE1_TFBS_cad
2R	10995392	2R_10995392_SNP [dm3] 2R_15107887_SNP [dm6]	C	T	2.547e^-4	0.724	INTERGENIC
2R	5826261	2R_5826261_SNP [dm3] 2R_9938756_SNP [dm6]	C	A	2.549e^-4	0.724	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	15767674	3R_15767674_SNP [dm3] 3R_19941952_SNP [dm6]	A	T	2.552e^-4	0.724	INTRON Hs6st
2L	1513464	2L_1513464_SNP [dm3] 2L_1513464_SNP [dm6]	G	A	2.553e^-4	0.724	INTERGENIC
2R	12035665	2R_12035665_SNP [dm3] 2R_16148160_SNP [dm6]	T	C	2.566e^-4	0.724	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_sens
3L	5223635	3L_5223635_SNP [dm3] 3L_5230535_SNP [dm6]	A	T	2.569e^-4	0.724	INTRON shep
2R	17843111	2R_17843111_SNP [dm3] 2R_21955606_SNP [dm6]	A	C	2.569e^-4	0.724	UPSTREAM CG13494 INTERGENIC
2R	17843136	2R_17843136_SNP [dm3] 2R_21955631_SNP [dm6]	C	T	2.569e^-4	0.724	UPSTREAM CG13494 INTERGENIC
2R	17843163	2R_17843163_SNP [dm3] 2R_21955658_SNP [dm6]	G	T	2.569e^-4	0.724	UPSTREAM CG13494 INTERGENIC
X	13715064	X_13715064_SNP [dm3] X_13821031_SNP [dm6]	T	C	2.569e^-4	0.724	INTRON Clic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4910322	2R_4910322_SNP [dm3] 2R_9022817_SNP [dm6]	T	C	2.575e^-4	0.724	SYNONYMOUS_CODING CG8170	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	13292009	3R_13292009_SNP [dm3] 3R_17466287_SNP [dm6]	G	A	2.575e^-4	0.724	INTERGENIC
3L	13906933	3L_13906933_SNP [dm3] 3L_13913833_SNP [dm6]	T	G	2.579e^-4	0.724	INTRON Rgl
3L	6488959	3L_6488959_SNP [dm3] 3L_6495859_SNP [dm6]	C	G	2.584e^-4	0.724	UTR_5_PRIME sfl UPSTREAM CG10144	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
X	1540367	X_1540367_SNP [dm3] X_1646334_SNP [dm6]	T	A	2.589e^-4	0.724	INTRON Mur2B & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13906943	3L_13906943_SNP [dm3] 3L_13913843_SNP [dm6]	T	C	2.593e^-4	0.724	INTRON Rgl
2L	6746987	2L_6746987_SNP [dm3] 2L_6746987_SNP [dm6]	A	T	2.596e^-4	0.724	DOWNSTREAM CG44271 INTRON CG11221
3L	7818991	3L_7818991_SNP [dm3] 3L_7825891_SNP [dm6]	A	G	2.598e^-4	0.724	SYNONYMOUS_CODING Pdp1 INTRON Pdp1	TF binding site mE1_TFBS_cad
2L	13154094	2L_13154094_SNP [dm3] 2L_13154094_SNP [dm6]	C	T	2.600e^-4	0.724	INTERGENIC
X	17486925	X_17486925_DEL [dm3] X_17592892_DEL [dm6]	AGGGCGATGCAATCGTCTAG...	A	2.603e^-4	0.724	INTRON CG12991
2R	8836156	2R_8836156_SNP [dm3] 2R_12948651_SNP [dm6]	T	A	2.609e^-4	0.724	UTR_3_PRIME CG44251	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16279632	3R_16279632_SNP [dm3] 3R_20453910_SNP [dm6]	G	C	2.612e^-4	0.724	INTRON Gfrl
X	5331614	X_5331614_SNP [dm3] X_5437581_SNP [dm6]	A	C	2.614e^-4	0.724	INTERGENIC
2R	9431059	2R_9431059_SNP [dm3] 2R_13543554_SNP [dm6]	G	A	2.614e^-4	0.724	INTRON CG6145
2R	19374337	2R_19374337_SNP [dm3] 2R_23486814_SNP [dm6]	G	A	2.618e^-4	0.724	INTRON CG43795	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18412735	2R_18412735_INS [dm3] 2R_22525230_INS [dm6]	G	GG	2.620e^-4	0.724	INTRON px
3R	12857535	3R_12857535_SNP [dm3] 3R_17031813_SNP [dm6]	T	G	2.623e^-4	0.724	START_GAINED CG31268 UTR_5_PRIME CG31268
2R	18505873	2R_18505873_SNP [dm3] 2R_22618368_SNP [dm6]	C	T	2.629e^-4	0.724	INTRON CG33143
3R	25532453	3R_25532453_SNP [dm3] 3R_29706731_SNP [dm6]	A	G	2.634e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7469298	2L_7469298_SNP [dm3] 2L_7469298_SNP [dm6]	A	T	2.642e^-4	0.724	INTRON CG6055
2R	10995254	2R_10995254_SNP [dm3] 2R_15107749_SNP [dm6]	T	G	2.647e^-4	0.724	INTERGENIC
X	6155678	X_6155678_SNP [dm3] X_6261645_SNP [dm6]	T	C	2.648e^-4	0.724	NON_SYNONYMOUS_CODING CG3781 INTRON schlank	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11462784	2R_11462784_SNP [dm3] 2R_15575279_SNP [dm6]	C	T	2.653e^-4	0.724	INTERGENIC
2R	14529309	2R_14529309_SNP [dm3] 2R_18641804_SNP [dm6]	G	A	2.654e^-4	0.724	SPLICE_SITE_REGION SP2637 INTRON SP2637	TF binding site mE1_TFBS_cad
3R	21722835	3R_21722835_SNP [dm3] 3R_25897113_SNP [dm6]	C	T	2.654e^-4	0.724	UTR_3_PRIME CG5948 UPSTREAM MCO3
3L	12463397	3L_12463397_SNP [dm3] 3L_12470297_SNP [dm6]	T	G	2.656e^-4	0.724	UPSTREAM CG32102 INTERGENIC
3L	20591000	3L_20591000_SNP [dm3] 3L_20597900_SNP [dm6]	A	G	2.656e^-4	0.724	UTR_3_PRIME knrl
X	13254803	X_13254803_SNP [dm3] X_13360770_SNP [dm6]	A	G	2.661e^-4	0.724	INTRON Syt12
X	21297351	X_21297351_SNP [dm3] X_21426324_SNP [dm6]	A	C	2.666e^-4	0.724	INTRON CG42343
3L	13459775	3L_13459775_SNP [dm3] 3L_13466675_SNP [dm6]	C	T	2.669e^-4	0.724	UTR_3_PRIME CG10089
2L	12681229	2L_12681229_SNP [dm3] 2L_12681229_SNP [dm6]	T	G	2.672e^-4	0.724	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15543274	2L_15543274_SNP [dm3] 2L_15543274_SNP [dm6]	G	T	2.672e^-4	0.724	INTERGENIC
2L	4007915	2L_4007915_SNP [dm3] 2L_4007915_SNP [dm6]	T	A	2.675e^-4	0.724	SYNONYMOUS_CODING CG43773 UPSTREAM CG43774
3R	7947615	3R_7947615_SNP [dm3] 3R_12121893_SNP [dm6]	A	G	2.678e^-4	0.724	INTRON CG4702
2L	9046748	2L_9046748_SNP [dm3] 2L_9046748_SNP [dm6]	C	T	2.683e^-4	0.724	INTERGENIC
3R	17737822	3R_17737822_SNP [dm3] 3R_21912100_SNP [dm6]	G	T	2.686e^-4	0.724	SYNONYMOUS_CODING CG6690
3L	7813448	3L_7813448_SNP [dm3] 3L_7820348_SNP [dm6]	A	G	2.696e^-4	0.724	INTRON Pdp1
3R	26152339	3R_26152339_SNP [dm3] 3R_30326617_SNP [dm6]	T	G	2.706e^-4	0.724	INTRON hdc
2L	16165933	2L_16165933_DEL [dm3] 2L_16165933_DEL [dm6]	TC	T	2.710e^-4	0.724	SPLICE_SITE_REGION Ca-alpha1D UTR_5_PRIME Ca-alpha1D
2L	13476901	2L_13476901_INS [dm3] 2L_13476901_INS [dm6]	T	TGTGATAAAAT...	2.717e^-4	0.724	INTRON CG42784
2L	7757273	2L_7757273_SNP [dm3] 2L_7757273_SNP [dm6]	T	G	2.724e^-4	0.724	DOWNSTREAM CG14538 INTRON CG7196
2R	4561273	2R_4561273_INS [dm3] 2R_8673768_INS [dm6]	C	CC	2.726e^-4	0.724	INTRON Acsl	TF binding site mE1_TFBS_Trl
3L	5834612	3L_5834612_SNP [dm3] 3L_5841512_SNP [dm6]	G	A	2.727e^-4	0.724	INTRON vn	TF binding site BDTNP1_TFBS_dl
3L	17218940	3L_17218940_SNP [dm3] 3L_17225840_SNP [dm6]	T	A	2.736e^-4	0.724	INTRON Rbp6
2R	11998622	2R_11998622_SNP [dm3] 2R_16111117_SNP [dm6]	A	T	2.756e^-4	0.724	INTRON Asph	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4588067	2L_4588067_SNP [dm3] 2L_4588067_SNP [dm6]	G	T	2.763e^-4	0.724	INTRON dp
2R	6492077	2R_6492077_SNP [dm3] 2R_10604572_SNP [dm6]	A	T	2.768e^-4	0.724	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	15538220	2L_15538220_SNP [dm3] 2L_15538220_SNP [dm6]	C	A	2.783e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9203144	2L_9203144_INS [dm3] 2L_9203144_INS [dm6]	AA	TTT	2.784e^-4	0.724	INTRON tai	TF binding site mE1_TFBS_Trl
2L	58825	2L_58825_SNP [dm3] 2L_58825_SNP [dm6]	G	A	2.785e^-4	0.724	INTRON Cda5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12332950	2L_12332950_SNP [dm3] 2L_12332950_SNP [dm6]	T	C	2.786e^-4	0.724	INTERGENIC
2L	9203147	2L_9203147_SNP [dm3] 2L_9203147_SNP [dm6]	C	A	2.788e^-4	0.724	INTRON tai	TF binding site mE1_TFBS_Trl
3R	19604336	3R_19604336_SNP [dm3] 3R_23778614_SNP [dm6]	C	T	2.792e^-4	0.724	NON_SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_sens
3R	3328097	3R_3328097_SNP [dm3] 3R_7502375_SNP [dm6]	T	C	2.798e^-4	0.724	UTR_5_PRIME CG1287 INTRON alpha-Est9
3L	14887144	3L_14887144_SNP [dm3] 3L_14894044_SNP [dm6]	T	A	2.805e^-4	0.724	INTRON CG34245
2L	6990626	2L_6990626_SNP [dm3] 2L_6990626_SNP [dm6]	T	C	2.807e^-4	0.724	INTRON uif
2L	4676407	2L_4676407_SNP [dm3] 2L_4676407_SNP [dm6]	T	G	2.821e^-4	0.724	INTERGENIC
2R	18109481	2R_18109481_SNP [dm3] 2R_22221976_SNP [dm6]	A	T	2.825e^-4	0.724	NON_SYNONYMOUS_CODING Oatp58Db	TF binding site mE1_TFBS_sens
3R	2917317	3R_2917317_SNP [dm3] 3R_7091595_SNP [dm6]	G	A	2.832e^-4	0.724	DOWNSTREAM CR43685 INTERGENIC	TF binding site mE1_TFBS_cad
3R	7947742	3R_7947742_SNP [dm3] 3R_12122020_SNP [dm6]	T	C	2.834e^-4	0.724	INTRON CG4702
3L	7951352	3L_7951352_INS [dm3] 3L_7958252_INS [dm6]	T	TTAG	2.837e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11336864	3L_11336864_DEL [dm3] 3L_11343764_DEL [dm6]	AAGCGGTGCGG...	A	2.844e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA
3R	21441611	3R_21441611_SNP [dm3] 3R_25615889_SNP [dm6]	T	A	2.846e^-4	0.724	INTRON Npl4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13754079	2L_13754079_SNP [dm3] 2L_13754079_SNP [dm6]	G	T	2.853e^-4	0.724	INTRON CR44846 & 1 other EXON CR44846
2R	18423350	2R_18423350_SNP [dm3] 2R_22535845_SNP [dm6]	T	A	2.853e^-4	0.724	INTRON px
2R	4910385	2R_4910385_SNP [dm3] 2R_9022880_SNP [dm6]	C	G	2.857e^-4	0.724	SYNONYMOUS_CODING CG8170	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8576734	2L_8576734_SNP [dm3] 2L_8576734_SNP [dm6]	T	C	2.857e^-4	0.724	INTRON Sema-1a	TF binding site mE1_TFBS_HSA
3L	16380869	3L_16380869_SNP [dm3] 3L_16387769_SNP [dm6]	C	A	2.859e^-4	0.724	NON_SYNONYMOUS_CODING RAF2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	10530281	2L_10530281_SNP [dm3] 2L_10530281_SNP [dm6]	G	A	2.861e^-4	0.724	INTRON Lip4
2R	8836441	2R_8836441_SNP [dm3] 2R_12948936_SNP [dm6]	T	G	2.866e^-4	0.724	SYNONYMOUS_CODING CG44251	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	27566945	3R_27566945_SNP [dm3] 3R_31741223_SNP [dm6]	C	A	2.867e^-4	0.724	INTRON Ef1alpha100E	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo
2R	13089764	2R_13089764_SNP [dm3] 2R_17202259_SNP [dm6]	A	C	2.869e^-4	0.724	INTERGENIC
X	6623499	X_6623499_SNP [dm3] X_6729466_SNP [dm6]	A	T	2.870e^-4	0.724	INTRON CG3168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7886209	3L_7886209_SNP [dm3] 3L_7893109_SNP [dm6]	C	T	2.872e^-4	0.724	INTRON CG32365
2R	16682027	2R_16682027_SNP [dm3] 2R_20794522_SNP [dm6]	T	C	2.873e^-4	0.724	DOWNSTREAM CG15225 INTERGENIC
3L	13906945	3L_13906945_SNP [dm3] 3L_13913845_SNP [dm6]	T	A	2.874e^-4	0.724	INTRON Rgl
2L	6593870	2L_6593870_SNP [dm3] 2L_6593870_SNP [dm6]	G	A	2.877e^-4	0.724	INTRON CG11319
3L	6580566	3L_6580566_SNP [dm3] 3L_6587466_SNP [dm6]	T	A	2.878e^-4	0.724	INTRON CG18769 & 1 other
2L	9046718	2L_9046718_DEL [dm3] 2L_9046718_DEL [dm6]	AAAAAGTAGA	A	2.881e^-4	0.724	INTERGENIC
2L	7184424	2L_7184424_SNP [dm3] 2L_7184424_SNP [dm6]	A	C	2.882e^-4	0.724	INTRON CG4495	TF binding site BDTNP1_TFBS_twi
3R	20254884	3R_20254884_SNP [dm3] 3R_24429162_SNP [dm6]	G	C	2.883e^-4	0.724	INTRON nAChRalpha1	TF binding site mE1_TFBS_chinmo
2R	13622517	2R_13622517_SNP [dm3] 2R_17735012_SNP [dm6]	A	T	2.899e^-4	0.724	UTR_3_PRIME CG6406 DOWNSTREAM CG34195
X	22183044	X_22183044_SNP [dm3] X_22781208_SNP [dm6]	T	G	2.900e^-4	0.724	INTRON CR44997
X	16580513	X_16580513_SNP [dm3] X_16686480_SNP [dm6]	G	T	2.900e^-4	0.724	SYNONYMOUS_CODING Sep4
3R	16328620	3R_16328620_SNP [dm3] 3R_20502898_SNP [dm6]	G	A	2.902e^-4	0.724	UPSTREAM Dic2 DOWNSTREAM MtnB INTERGENIC
2L	10851481	2L_10851481_SNP [dm3] 2L_10851481_SNP [dm6]	C	T	2.911e^-4	0.724	SYNONYMOUS_CODING CG43129 UTR_5_PRIME CG43129 UPSTREAM porin	TF binding site BDTNP1_TFBS_dl
X	1616708	X_1616708_SNP [dm3] X_1722675_SNP [dm6]	G	T	2.922e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19579060	2R_19579060_SNP [dm3] 2R_23691537_SNP [dm6]	C	T	2.931e^-4	0.724	DOWNSTREAM Pal2 INTRON CG30183	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13846323	3R_13846323_SNP [dm3] 3R_18020601_SNP [dm6]	G	T	2.935e^-4	0.724	SYNONYMOUS_CODING DNaseII UPSTREAM CG7785	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7881789	2R_7881789_SNP [dm3] 2R_11994284_SNP [dm6]	G	A	2.936e^-4	0.724	UPSTREAM CR45318 DOWNSTREAM CR45319 EXON CR45319
2R	12026171	2R_12026171_SNP [dm3] 2R_16138666_SNP [dm6]	A	G	2.951e^-4	0.724	UPSTREAM Got1 DOWNSTREAM spin INTRON Got1	TF binding site BDTNP1_TFBS_dl
2L	16998075	2L_16998075_SNP [dm3] 2L_16998075_SNP [dm6]	C	G	2.957e^-4	0.724	UPSTREAM CR45356 & 1 other INTERGENIC
2L	13032958	2L_13032958_SNP [dm3] 2L_13032958_SNP [dm6]	A	C	2.959e^-4	0.724	INTRON CG9932
2R	18514016	2R_18514016_SNP [dm3] 2R_22626511_SNP [dm6]	T	C	2.965e^-4	0.724	INTRON CG33143
3R	14133164	3R_14133164_SNP [dm3] 3R_18307442_SNP [dm6]	T	C	2.966e^-4	0.724	INTRON PKD
3L	7275656	3L_7275656_SNP [dm3] 3L_7282556_SNP [dm6]	C	T	2.971e^-4	0.724	INTRON unc-13-4A
3R	1746030	3R_1746030_SNP [dm3] 3R_5920308_SNP [dm6]	G	T	2.972e^-4	0.724	INTRON CG34113
3L	17218920	3L_17218920_SNP [dm3] 3L_17225820_SNP [dm6]	C	T	2.974e^-4	0.724	INTRON Rbp6
X	19388299	X_19388299_SNP [dm3] X_19494266_SNP [dm6]	C	T	2.979e^-4	0.724	SYNONYMOUS_CODING CG12204 DOWNSTREAM CG12203 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
2L	12685024	2L_12685024_SNP [dm3] 2L_12685024_SNP [dm6]	G	A	2.980e^-4	0.724	SYNONYMOUS_CODING pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11574036	3R_11574036_SNP [dm3] 3R_15748314_SNP [dm6]	G	A	2.981e^-4	0.724	INTERGENIC
2L	12681409	2L_12681409_SNP [dm3] 2L_12681409_SNP [dm6]	A	T	2.988e^-4	0.724	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	12681223	2L_12681223_SNP [dm3] 2L_12681223_SNP [dm6]	G	C	2.988e^-4	0.724	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3448410	2L_3448410_SNP [dm3] 2L_3448410_SNP [dm6]	T	C	2.989e^-4	0.724	DOWNSTREAM CG2772 INTERGENIC
2R	18516918	2R_18516918_DEL [dm3] 2R_22629413_DEL [dm6]	AGTGTTTATTTA...	A	2.991e^-4	0.724	INTRON CG33143	TF binding site mE1_TFBS_chinmo
3L	5609954	3L_5609954_SNP [dm3] 3L_5616854_SNP [dm6]	C	A	3.006e^-4	0.724	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	22961179	3L_22961179_SNP [dm3] 3L_22968079_SNP [dm6]	A	G	3.011e^-4	0.724	INTERGENIC	transposable element FlyBase
3L	10558039	3L_10558039_SNP [dm3] 3L_10564939_SNP [dm6]	C	T	3.012e^-4	0.724	INTRON A2bp1
2R	1958661	2R_1958661_SNP [dm3] 2R_6071156_SNP [dm6]	T	C	3.015e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22070268	3R_22070268_SNP [dm3] 3R_26244546_SNP [dm6]	C	G	3.016e^-4	0.724	INTRON CR42745
3L	22962027	3L_22962027_SNP [dm3] 3L_22968927_SNP [dm6]	C	T	3.019e^-4	0.724	INTERGENIC	transposable element FlyBase
3R	2098548	3R_2098548_SNP [dm3] 3R_6272826_SNP [dm6]	A	G	3.019e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_cad
X	1610444	X_1610444_SNP [dm3] X_1716411_SNP [dm6]	C	T	3.029e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	5858483	2R_5858483_SNP [dm3] 2R_9970978_SNP [dm6]	T	A	3.031e^-4	0.724	UPSTREAM CG12134 DOWNSTREAM Adam INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	20494171	3R_20494171_SNP [dm3] 3R_24668449_SNP [dm6]	C	T	3.035e^-4	0.724	UTR_5_PRIME slo INTRON slo	regulatory region REDfly_CRMs
3L	11336730	3L_11336730_SNP [dm3] 3L_11343630_SNP [dm6]	T	C	3.039e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA
3R	13291971	3R_13291971_SNP [dm3] 3R_17466249_SNP [dm6]	A	G	3.039e^-4	0.724	INTERGENIC
3R	14154028	3R_14154028_SNP [dm3] 3R_18328306_SNP [dm6]	G	T	3.042e^-4	0.724	INTRON CG31235
2R	9230732	2R_9230732_SNP [dm3] 2R_13343227_SNP [dm6]	C	T	3.045e^-4	0.724	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7870975	X_7870975_SNP [dm3] X_7976942_SNP [dm6]	A	G	3.050e^-4	0.724	INTRON sn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18513137	2R_18513137_SNP [dm3] 2R_22625632_SNP [dm6]	T	G	3.054e^-4	0.724	INTRON CG33143
2L	15137901	2L_15137901_SNP [dm3] 2L_15137901_SNP [dm6]	A	T	3.055e^-4	0.724	INTERGENIC
2R	17843154	2R_17843154_SNP [dm3] 2R_21955649_SNP [dm6]	G	A	3.055e^-4	0.724	UPSTREAM CG13494 INTERGENIC
X	21225311	X_21225311_SNP [dm3] X_21354284_SNP [dm6]	C	A	3.056e^-4	0.724	SYNONYMOUS_CODING sol UTR_3_PRIME sol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9910865	3R_9910865_SNP [dm3] 3R_14085143_SNP [dm6]	G	A	3.062e^-4	0.724	INTRON foxo
2L	6370525	2L_6370525_SNP [dm3] 2L_6370525_SNP [dm6]	C	T	3.064e^-4	0.724	DOWNSTREAM CG9505 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	14696471	3R_14696471_SNP [dm3] 3R_18870749_SNP [dm6]	G	A	3.066e^-4	0.724	INTERGENIC
2R	14043146	2R_14043146_SNP [dm3] 2R_18155641_SNP [dm6]	C	A	3.069e^-4	0.724	INTRON lolal	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe
2R	19854651	2R_19854651_SNP [dm3] 2R_23967128_SNP [dm6]	A	T	3.074e^-4	0.724	UTR_3_PRIME CG34213 UPSTREAM or DOWNSTREAM Alas
3L	1948114	3L_1948114_SNP [dm3] 3L_1948114_SNP [dm6]	C	T	3.074e^-4	0.724	SYNONYMOUS_CODING Cnb UPSTREAM mu2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1662241	2L_1662241_SNP [dm3] 2L_1662241_SNP [dm6]	A	G	3.084e^-4	0.724	INTRON chinmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10670161	2R_10670161_SNP [dm3] 2R_14782656_SNP [dm6]	C	T	3.084e^-4	0.724	INTRON kn
2L	16584562	2L_16584562_SNP [dm3] 2L_16584562_SNP [dm6]	A	C	3.084e^-4	0.724	INTRON CG42389
X	1981530	X_1981530_SNP [dm3] X_2087497_SNP [dm6]	G	A	3.087e^-4	0.724	INTRON Unc-76	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18505928	2R_18505928_SNP [dm3] 2R_22618423_SNP [dm6]	A	G	3.091e^-4	0.724	INTRON CG33143
3R	3925949	3R_3925949_SNP [dm3] 3R_8100227_SNP [dm6]	C	T	3.099e^-4	0.724	SYNONYMOUS_CODING CG7900
3L	14988918	3L_14988918_SNP [dm3] 3L_14995818_SNP [dm6]	A	T	3.101e^-4	0.724	INTRON Zip71B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18657666	2L_18657666_INS [dm3] 2L_18657666_INS [dm6]	T	TA	3.103e^-4	0.724	INTRON MESR3
2L	13754028	2L_13754028_SNP [dm3] 2L_13754028_SNP [dm6]	A	T	3.105e^-4	0.724	INTRON CR44846 & 1 other EXON CR44846
3R	9963368	3R_9963368_SNP [dm3] 3R_14137646_SNP [dm6]	T	A	3.127e^-4	0.724	INTERGENIC
X	7373152	X_7373152_SNP [dm3] X_7479119_SNP [dm6]	C	T	3.134e^-4	0.724	INTERGENIC
3L	12586860	3L_12586860_SNP [dm3] 3L_12593760_SNP [dm6]	G	C	3.140e^-4	0.724	INTRON ara
X	19388198	X_19388198_SNP [dm3] X_19494165_SNP [dm6]	T	G	3.142e^-4	0.724	NON_SYNONYMOUS_CODING CG12204 DOWNSTREAM CG12203 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
3R	22639413	3R_22639413_SNP [dm3] 3R_26813691_SNP [dm6]	C	A	3.167e^-4	0.724	INTRON Tl
3L	8169613	3L_8169613_SNP [dm3] 3L_8176513_SNP [dm6]	G	T	3.174e^-4	0.724	SYNONYMOUS_CODING Nmt UPSTREAM RecQ4	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15767676	3R_15767676_SNP [dm3] 3R_19941954_SNP [dm6]	A	T	3.176e^-4	0.724	INTRON Hs6st
2R	6990784	2R_6990784_SNP [dm3] 2R_11103279_SNP [dm6]	G	C	3.182e^-4	0.724	INTRON luna	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	7373067	X_7373067_DEL [dm3] X_7479034_DEL [dm6]	GC	G	3.183e^-4	0.724	INTERGENIC
2R	10995295	2R_10995295_SNP [dm3] 2R_15107790_SNP [dm6]	A	T	3.187e^-4	0.724	INTERGENIC
3R	7947830	3R_7947830_SNP [dm3] 3R_12122108_SNP [dm6]	T	G	3.190e^-4	0.724	INTRON CG4702	TF binding site mE1_TFBS_cad
2L	4382305	2L_4382305_SNP [dm3] 2L_4382305_SNP [dm6]	T	G	3.191e^-4	0.724	NON_SYNONYMOUS_CODING CG17612 DOWNSTREAM CG3338	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	12008047	3L_12008047_SNP [dm3] 3L_12014947_SNP [dm6]	A	T	3.193e^-4	0.724	INTRON rols
2L	21618247	2L_21618247_SNP [dm3] 2L_21618247_SNP [dm6]	T	G	3.194e^-4	0.724	INTRON CG2201	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24561909	3R_24561909_SNP [dm3] 3R_28736187_SNP [dm6]	C	T	3.198e^-4	0.724	DOWNSTREAM AstA-R2 INTERGENIC
3L	5640334	3L_5640334_SNP [dm3] 3L_5647234_SNP [dm6]	C	A	3.205e^-4	0.724	SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5324264	3R_5324264_SNP [dm3] 3R_9498542_SNP [dm6]	A	T	3.205e^-4	0.724	UPSTREAM RhoL INTRON RhoL	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	12442260	3R_12442260_SNP [dm3] 3R_16616538_SNP [dm6]	A	G	3.208e^-4	0.724	SYNONYMOUS_CODING CG17562
X	17680969	X_17680969_SNP [dm3] X_17786936_SNP [dm6]	T	A	3.213e^-4	0.724	INTERGENIC
2L	19123059	2L_19123059_SNP [dm3] 2L_19123059_SNP [dm6]	A	T	3.214e^-4	0.724	DOWNSTREAM l_2_37Cb INTRON l_2_37Cc
2R	5827036	2R_5827036_SNP [dm3] 2R_9939531_SNP [dm6]	G	C	3.219e^-4	0.724	INTRON Mef2	regulatory region REDfly_CRMs
3R	13754324	3R_13754324_DEL [dm3] 3R_17928602_DEL [dm6]	GC	G	3.223e^-4	0.724	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3846852	3L_3846852_SNP [dm3] 3L_3846852_SNP [dm6]	C	G	3.228e^-4	0.724	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3R	3930993	3R_3930993_SNP [dm3] 3R_8105271_SNP [dm6]	C	A	3.229e^-4	0.724	UPSTREAM puc DOWNSTREAM CG7900 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad
3L	14989277	3L_14989277_SNP [dm3] 3L_14996177_SNP [dm6]	T	G	3.240e^-4	0.724	SYNONYMOUS_CODING Zip71B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9969705	3R_9969705_SNP [dm3] 3R_14143983_SNP [dm6]	C	T	3.245e^-4	0.724	INTERGENIC
X	3544058	X_3544058_SNP [dm3] X_3650025_SNP [dm6]	G	A	3.245e^-4	0.724	INTRON AstA-R1
X	18807336	X_18807336_SNP [dm3] X_18913303_SNP [dm6]	T	G	3.246e^-4	0.724	DOWNSTREAM CR44708 INTERGENIC
X	16596480	X_16596480_DEL [dm3] X_16702447_DEL [dm6]	TTATCAACGTATTTAGT...	T	3.249e^-4	0.724	UPSTREAM spheroide DOWNSTREAM CG9673 INTRON CG4678
3L	20993397	3L_20993397_SNP [dm3] 3L_21000297_SNP [dm6]	A	T	3.254e^-4	0.724	SYNONYMOUS_CODING skd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16353263	3R_16353263_SNP [dm3] 3R_20527541_SNP [dm6]	A	G	3.263e^-4	0.724	INTERGENIC
2R	18584646	2R_18584646_SNP [dm3] 2R_22697141_SNP [dm6]	G	A	3.265e^-4	0.724	INTRON robo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	11510814	3L_11510814_SNP [dm3] 3L_11517714_SNP [dm6]	A	G	3.271e^-4	0.724	NON_SYNONYMOUS_CODING CG7512	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	16279708	3R_16279708_SNP [dm3] 3R_20453986_SNP [dm6]	G	A	3.279e^-4	0.724	INTRON Gfrl
2R	18516931	2R_18516931_SNP [dm3] 2R_22629426_SNP [dm6]	G	A	3.285e^-4	0.724	INTRON CG33143	TF binding site mE1_TFBS_chinmo
2R	18516933	2R_18516933_SNP [dm3] 2R_22629428_SNP [dm6]	C	T	3.285e^-4	0.724	INTRON CG33143	TF binding site mE1_TFBS_chinmo
2R	18516965	2R_18516965_DEL [dm3] 2R_22629460_DEL [dm6]	GATTGAACC	G	3.285e^-4	0.724	INTRON CG33143	TF binding site mE1_TFBS_chinmo
2R	18516988	2R_18516988_SNP [dm3] 2R_22629483_SNP [dm6]	G	A	3.285e^-4	0.724	INTRON CG33143	TF binding site mE1_TFBS_chinmo
2R	14848689	2R_14848689_SNP [dm3] 2R_18961184_SNP [dm6]	T	C	3.286e^-4	0.724	INTERGENIC
3L	8169871	3L_8169871_SNP [dm3] 3L_8176771_SNP [dm6]	G	A	3.297e^-4	0.724	SYNONYMOUS_CODING Nmt UPSTREAM RecQ4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4482582	3L_4482582_SNP [dm3] 3L_4482582_SNP [dm6]	G	A	3.300e^-4	0.724	UPSTREAM CG11350 INTERGENIC
3L	16183821	3L_16183821_SNP [dm3] 3L_16190721_SNP [dm6]	A	C	3.301e^-4	0.724	INTERGENIC
3L	13877460	3L_13877460_SNP [dm3] 3L_13884360_SNP [dm6]	G	T	3.306e^-4	0.724	INTRON dysc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1482690	3L_1482690_SNP [dm3] 3L_1482690_SNP [dm6]	C	G	3.307e^-4	0.724	INTRON stet	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18637389	2R_18637389_SNP [dm3] 2R_22749884_SNP [dm6]	C	T	3.310e^-4	0.724	INTRON CG42260
2R	10316998	2R_10316998_SNP [dm3] 2R_14429493_SNP [dm6]	C	G	3.312e^-4	0.724	INTRON phyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14192208	X_14192208_INS [dm3] X_14298175_INS [dm6]	T	TT	3.314e^-4	0.724	INTERGENIC
3L	4475321	3L_4475321_DEL [dm3] 3L_4475321_DEL [dm6]	TT	T	3.316e^-4	0.724	DOWNSTREAM CG11349 INTERGENIC
2R	13624623	2R_13624623_SNP [dm3] 2R_17737118_SNP [dm6]	G	A	3.317e^-4	0.724	UTR_5_PRIME CG6406 DOWNSTREAM CG6401	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	12851084	3R_12851084_SNP [dm3] 3R_17025362_SNP [dm6]	A	G	3.321e^-4	0.724	INTRON Pxd
X	15550288	X_15550288_INS [dm3] X_15656255_INS [dm6]	T	TTTGG	3.322e^-4	0.724	INTERGENIC
3L	11178227	3L_11178227_SNP [dm3] 3L_11185127_SNP [dm6]	A	T	3.326e^-4	0.724	INTRON GlcAT-P
2R	5854594	2R_5854594_SNP [dm3] 2R_9967089_SNP [dm6]	C	T	3.328e^-4	0.724	UPSTREAM CG12133 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	21441606	3R_21441606_SNP [dm3] 3R_25615884_SNP [dm6]	T	A	3.333e^-4	0.724	INTRON Npl4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6468126	2R_6468126_SNP [dm3] 2R_10580621_SNP [dm6]	C	G	3.335e^-4	0.724	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	10821774	3L_10821774_DEL [dm3] 3L_10828674_DEL [dm6]	AA	A	3.339e^-4	0.724	INTERGENIC
2R	19862432	2R_19862432_SNP [dm3] 2R_23974909_SNP [dm6]	G	A	3.350e^-4	0.724	SYNONYMOUS_CODING mr DOWNSTREAM Gadd34
2L	7107061	2L_7107061_SNP [dm3] 2L_7107061_SNP [dm6]	C	A	3.351e^-4	0.724	INTRON Pvf3
3R	1751784	3R_1751784_SNP [dm3] 3R_5926062_SNP [dm6]	C	T	3.360e^-4	0.724	INTRON CG34113
3L	10532446	3L_10532446_SNP [dm3] 3L_10539346_SNP [dm6]	A	T	3.361e^-4	0.724	INTRON A2bp1
3R	22639544	3R_22639544_SNP [dm3] 3R_26813822_SNP [dm6]	G	A	3.363e^-4	0.724	INTRON Tl
2R	6468157	2R_6468157_SNP [dm3] 2R_10580652_SNP [dm6]	G	A	3.364e^-4	0.724	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	12026796	2L_12026796_SNP [dm3] 2L_12026796_SNP [dm6]	G	T	3.364e^-4	0.724	UPSTREAM dmGlut INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	155547	2L_155547_INS [dm3] 2L_155547_INS [dm6]	G	GGTGTATCCAAATTGAACTG...	3.365e^-4	0.724	SPLICE_SITE_REGION CG11455 UTR_5_PRIME CG11455 UPSTREAM CG3436 & 1 other INTRON CG11455	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	10582505	2L_10582505_SNP [dm3] 2L_10582505_SNP [dm6]	A	C	3.365e^-4	0.724	UPSTREAM CG34161 INTRON Trim9
3R	27169681	3R_27169681_SNP [dm3] 3R_31343959_SNP [dm6]	A	G	3.366e^-4	0.724	INTRON CG34347
2L	13154102	2L_13154102_SNP [dm3] 2L_13154102_SNP [dm6]	T	A	3.370e^-4	0.724	INTERGENIC
2L	6392840	2L_6392840_SNP [dm3] 2L_6392840_SNP [dm6]	T	G	3.370e^-4	0.724	INTRON CG42368
2R	19271266	2R_19271266_SNP [dm3] 2R_23383743_SNP [dm6]	A	G	3.379e^-4	0.724	UPSTREAM CG13551 DOWNSTREAM CG30414 EXON CR44784	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
3L	8315129	3L_8315129_SNP [dm3] 3L_8322029_SNP [dm6]	T	A	3.382e^-4	0.724	NON_SYNONYMOUS_CODING CG13670
3L	18215159	3L_18215159_SNP [dm3] 3L_18222059_SNP [dm6]	A	T	3.388e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1603822	2L_1603822_DEL [dm3] 2L_1603822_DEL [dm6]	GG	G	3.391e^-4	0.724	INTRON CG31935 & 1 other
3R	22082166	3R_22082166_SNP [dm3] 3R_26256444_SNP [dm6]	G	A	3.393e^-4	0.724	INTRON Ald	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17583615	2L_17583615_SNP [dm3] 2L_17583615_SNP [dm6]	G	T	3.394e^-4	0.724	UPSTREAM CR45111 INTERGENIC
2L	6392837	2L_6392837_SNP [dm3] 2L_6392837_SNP [dm6]	A	G	3.395e^-4	0.724	INTRON CG42368
3L	11695574	3L_11695574_SNP [dm3] 3L_11702474_SNP [dm6]	C	T	3.397e^-4	0.724	INTRON CG11658
3L	11999442	3L_11999442_SNP [dm3] 3L_12006342_SNP [dm6]	T	A	3.398e^-4	0.724	INTRON CG6928
2L	1095226	2L_1095226_SNP [dm3] 2L_1095226_SNP [dm6]	T	C	3.401e^-4	0.724	INTRON CG4629
3L	3714493	3L_3714493_SNP [dm3] 3L_3714493_SNP [dm6]	C	A	3.416e^-4	0.724	NON_SYNONYMOUS_CODING CG43089 DOWNSTREAM CG32264
X	1611956	X_1611956_SNP [dm3] X_1717923_SNP [dm6]	T	C	3.422e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3697174	2L_3697174_SNP [dm3] 2L_3697174_SNP [dm6]	G	A	3.424e^-4	0.724	UPSTREAM CG16712 DOWNSTREAM CG3604 INTERGENIC
3L	20660803	3L_20660803_SNP [dm3] 3L_20667703_SNP [dm6]	G	C	3.424e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8838049	2R_8838049_SNP [dm3] 2R_12950544_SNP [dm6]	G	A	3.426e^-4	0.724	SYNONYMOUS_CODING CG44250 UPSTREAM CG44251 INTRON CG44251	TF binding site mE1_TFBS_cad
2L	15412016	2L_15412016_SNP [dm3] 2L_15412016_SNP [dm6]	C	A	3.429e^-4	0.724	INTERGENIC
2L	16944735	2L_16944735_SNP [dm3] 2L_16944735_SNP [dm6]	A	T	3.429e^-4	0.724	EXON CR43053
3L	15635195	3L_15635195_SNP [dm3] 3L_15642095_SNP [dm6]	T	C	3.431e^-4	0.724	INTRON comm3	insulator Insulator_Class_I.mE01
3R	23402829	3R_23402829_SNP [dm3] 3R_27577107_SNP [dm6]	T	C	3.435e^-4	0.724	INTRON wdb
2L	60530	2L_60530_SNP [dm3] 2L_60530_SNP [dm6]	T	A	3.437e^-4	0.724	INTRON Cda5	transposable element FlyBase
2R	5387846	2R_5387846_SNP [dm3] 2R_9500341_SNP [dm6]	G	T	3.442e^-4	0.724	INTRON Wnt2
3L	14989502	3L_14989502_SNP [dm3] 3L_14996402_SNP [dm6]	A	G	3.460e^-4	0.724	SYNONYMOUS_CODING Zip71B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	22012796	3R_22012796_SNP [dm3] 3R_26187074_SNP [dm6]	T	C	3.462e^-4	0.724	UTR_3_PRIME CG31323 & 1 other DOWNSTREAM CG31086 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7107060	2L_7107060_SNP [dm3] 2L_7107060_SNP [dm6]	A	T	3.463e^-4	0.724	INTRON Pvf3
3R	22437391	3R_22437391_SNP [dm3] 3R_26611669_SNP [dm6]	G	C	3.464e^-4	0.724	INTERGENIC
3L	22827648	3L_22827648_SNP [dm3] 3L_22834548_SNP [dm6]	G	T	3.466e^-4	0.724	INTRON jim	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6349312	X_6349312_SNP [dm3] X_6455279_SNP [dm6]	C	G	3.467e^-4	0.724	INTRON CG42340
3L	14973151	3L_14973151_SNP [dm3] 3L_14980051_SNP [dm6]	G	C	3.467e^-4	0.724	INTRON CG3349	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sbb
3L	16379635	3L_16379635_DEL [dm3] 3L_16386535_DEL [dm6]	AT	C	3.468e^-4	0.724	UTR_5_PRIME RAF2 UPSTREAM CG4729 INTRON RAF2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3R	3844339	3R_3844339_SNP [dm3] 3R_8018617_SNP [dm6]	T	C	3.478e^-4	0.724	SYNONYMOUS_CODING CG2747	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10993333	2R_10993333_SNP [dm3] 2R_15105828_SNP [dm6]	C	T	3.478e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16596408	X_16596408_SNP [dm3] X_16702375_SNP [dm6]	G	T	3.479e^-4	0.724	UPSTREAM spheroide DOWNSTREAM CG9673 INTRON CG4678
3L	19333850	3L_19333850_SNP [dm3] 3L_19340750_SNP [dm6]	G	A	3.483e^-4	0.724	UTR_3_PRIME CG32206
2R	18424161	2R_18424161_SNP [dm3] 2R_22536656_SNP [dm6]	G	A	3.491e^-4	0.724	SYNONYMOUS_CODING px
2R	15305031	2R_15305031_SNP [dm3] 2R_19417526_SNP [dm6]	C	A	3.492e^-4	0.724	INTRON hts
3L	10532056	3L_10532056_SNP [dm3] 3L_10538956_SNP [dm6]	C	G	3.493e^-4	0.724	INTRON A2bp1
2R	17786108	2R_17786108_SNP [dm3] 2R_21898603_SNP [dm6]	G	C	3.495e^-4	0.724	INTRON Fili
3L	12056988	3L_12056988_SNP [dm3] 3L_12063888_SNP [dm6]	A	G	3.496e^-4	0.724	INTRON rols
3R	22514633	3R_22514633_SNP [dm3] 3R_26688911_SNP [dm6]	A	C	3.508e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13877463	3L_13877463_SNP [dm3] 3L_13884363_SNP [dm6]	T	G	3.508e^-4	0.724	INTRON dysc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9785236	2R_9785236_SNP [dm3] 2R_13897731_SNP [dm6]	A	T	3.509e^-4	0.724	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	7457953	2L_7457953_SNP [dm3] 2L_7457953_SNP [dm6]	T	C	3.511e^-4	0.724	UPSTREAM Gr28b INTRON Gr28b
2L	13036097	2L_13036097_SNP [dm3] 2L_13036097_SNP [dm6]	G	C	3.516e^-4	0.724	INTRON CG9932	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	4047208	3R_4047208_SNP [dm3] 3R_8221486_SNP [dm6]	C	T	3.519e^-4	0.724	NON_SYNONYMOUS_CODING CG18249	TF binding site mE1_TFBS_sens
2L	17882455	2L_17882455_SNP [dm3] 2L_17882455_SNP [dm6]	T	C	3.525e^-4	0.724	INTERGENIC
X	3605854	X_3605854_SNP [dm3] X_3711821_SNP [dm6]	T	C	3.529e^-4	0.724	INTRON Rala
2R	6468128	2R_6468128_SNP [dm3] 2R_10580623_SNP [dm6]	G	T	3.536e^-4	0.724	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	15767635	3R_15767635_INS [dm3] 3R_19941913_INS [dm6]	G	TTTCTGT	3.541e^-4	0.724	INTRON Hs6st
X	5654925	X_5654925_SNP [dm3] X_5760892_SNP [dm6]	G	A	3.541e^-4	0.724	INTRON MAPk-Ak2	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3L	11547652	3L_11547652_SNP [dm3] 3L_11554552_SNP [dm6]	C	A	3.543e^-4	0.724	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	17868075	3R_17868075_SNP [dm3] 3R_22042353_SNP [dm6]	A	G	3.554e^-4	0.724	SPLICE_SITE_REGION how UTR_5_PRIME how	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2L	4675967	2L_4675967_SNP [dm3] 2L_4675967_SNP [dm6]	T	A	3.561e^-4	0.724	INTERGENIC
3R	17737762	3R_17737762_SNP [dm3] 3R_21912040_SNP [dm6]	A	T	3.565e^-4	0.724	NON_SYNONYMOUS_CODING CG6690
2L	7707584	2L_7707584_SNP [dm3] 2L_7707584_SNP [dm6]	G	T	3.567e^-4	0.724	NON_SYNONYMOUS_CODING Tep3 DOWNSTREAM CR44990
2L	21061116	2L_21061116_SNP [dm3] 2L_21061116_SNP [dm6]	C	G	3.571e^-4	0.724	INTRON CG9265
3R	16279681	3R_16279681_SNP [dm3] 3R_20453959_SNP [dm6]	G	T	3.573e^-4	0.724	INTRON Gfrl
3R	21703537	3R_21703537_SNP [dm3] 3R_25877815_SNP [dm6]	G	A	3.576e^-4	0.724	INTRON Tsp96F	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	10938741	X_10938741_SNP [dm3] X_11044708_SNP [dm6]	A	G	3.579e^-4	0.724	UPSTREAM CG11160 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1613403	X_1613403_SNP [dm3] X_1719370_SNP [dm6]	C	T	3.580e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	15831028	3L_15831028_SNP [dm3] 3L_15837928_SNP [dm6]	A	G	3.583e^-4	0.724	SYNONYMOUS_CODING CG32150 UTR_3_PRIME CG32150 UPSTREAM CG15715	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7152254	2L_7152254_SNP [dm3] 2L_7152254_SNP [dm6]	C	A	3.584e^-4	0.724	INTRON Pvf3
2R	5516197	2R_5516197_SNP [dm3] 2R_9628692_SNP [dm6]	A	T	3.585e^-4	0.724	INTRON Mmp2	TF binding site mE1_TFBS_inv
3R	15334577	3R_15334577_SNP [dm3] 3R_19508855_SNP [dm6]	C	T	3.586e^-4	0.724	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	5696125	3R_5696125_SNP [dm3] 3R_9870403_SNP [dm6]	G	A	3.596e^-4	0.724	INTERGENIC
X	1604420	X_1604420_SNP [dm3] X_1710387_SNP [dm6]	C	G	3.598e^-4	0.724	UPSTREAM CG3795 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	2097907	3R_2097907_SNP [dm3] 3R_6272185_SNP [dm6]	G	A	3.612e^-4	0.724	INTERGENIC
2R	19774018	2R_19774018_SNP [dm3] 2R_23886495_SNP [dm6]	A	T	3.613e^-4	0.724	UPSTREAM CG5597 INTERGENIC
3R	26151961	3R_26151961_SNP [dm3] 3R_30326239_SNP [dm6]	C	T	3.617e^-4	0.724	INTRON hdc	TF binding site mE1_TFBS_chinmo
X	14089552	X_14089552_SNP [dm3] X_14195519_SNP [dm6]	G	A	3.621e^-4	0.724	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	16325196	3R_16325196_SNP [dm3] 3R_20499474_SNP [dm6]	G	A	3.625e^-4	0.724	DOWNSTREAM Dic2 INTERGENIC
2R	5853354	2R_5853354_SNP [dm3] 2R_9965849_SNP [dm6]	C	A	3.629e^-4	0.724	UPSTREAM CG1418 INTERGENIC
3L	13877458	3L_13877458_SNP [dm3] 3L_13884358_SNP [dm6]	A	G	3.650e^-4	0.724	INTRON dysc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24563980	3R_24563980_SNP [dm3] 3R_28738258_SNP [dm6]	G	A	3.656e^-4	0.724	INTRON AstA-R2
2R	12119079	2R_12119079_SNP [dm3] 2R_16231574_SNP [dm6]	C	A	3.656e^-4	0.724	NON_SYNONYMOUS_CODING CG15701 UPSTREAM CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	7947822	3R_7947822_SNP [dm3] 3R_12122100_SNP [dm6]	C	A	3.658e^-4	0.724	INTRON CG4702	TF binding site mE1_TFBS_cad
2R	18376223	2R_18376223_SNP [dm3] 2R_22488718_SNP [dm6]	T	C	3.659e^-4	0.724	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_cad
2L	1957011	2L_1957011_SNP [dm3] 2L_1957011_SNP [dm6]	A	G	3.662e^-4	0.724	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	18267546	3L_18267546_SNP [dm3] 3L_18274446_SNP [dm6]	T	C	3.673e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	1234131	3L_1234131_SNP [dm3] 3L_1234131_SNP [dm6]	A	T	3.675e^-4	0.724	UTR_5_PRIME CG33966 DOWNSTREAM CG33965
2R	14193913	2R_14193913_SNP [dm3] 2R_18306408_SNP [dm6]	T	A	3.681e^-4	0.724	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	1134957	2L_1134957_SNP [dm3] 2L_1134957_SNP [dm6]	C	T	3.685e^-4	0.724	SYNONYMOUS_CODING CG4577 UPSTREAM Iris	TF binding site mE1_TFBS_chinmo
2L	13068887	2L_13068887_SNP [dm3] 2L_13068887_SNP [dm6]	T	G	3.685e^-4	0.724	INTERGENIC
2L	6000885	2L_6000885_SNP [dm3] 2L_6000885_SNP [dm6]	T	C	3.686e^-4	0.724	SYNONYMOUS_CODING Tsp26A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	8664702	3L_8664702_SNP [dm3] 3L_8671602_SNP [dm6]	A	G	3.686e^-4	0.724	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	17585823	X_17585823_INS [dm3] X_17691790_INS [dm6]	T	TAGT	3.690e^-4	0.724	INTRON chas
3L	8906746	3L_8906746_INS [dm3] 3L_8913646_INS [dm6]	T	TGT	3.691e^-4	0.724	UPSTREAM mfr INTRON Tsp66E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10331887	3L_10331887_SNP [dm3] 3L_10338787_SNP [dm6]	A	T	3.695e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_inv
2R	18580906	2R_18580906_SNP [dm3] 2R_22693401_SNP [dm6]	A	T	3.700e^-4	0.724	UTR_3_PRIME robo
3L	2828944	3L_2828944_SNP [dm3] 3L_2828944_SNP [dm6]	T	C	3.700e^-4	0.724	INTRON CG43444
3L	10389817	3L_10389817_SNP [dm3] 3L_10396717_SNP [dm6]	A	T	3.707e^-4	0.724	INTERGENIC
X	8228098	X_8228098_SNP [dm3] X_8334065_SNP [dm6]	C	T	3.711e^-4	0.724	INTRON nAChRalpha3	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	1981563	X_1981563_SNP [dm3] X_2087530_SNP [dm6]	T	C	3.713e^-4	0.724	INTRON Unc-76	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12725146	2L_12725146_SNP [dm3] 2L_12725146_SNP [dm6]	T	A	3.715e^-4	0.724	INTRON MRP
2R	7002014	2R_7002014_SNP [dm3] 2R_11114509_SNP [dm6]	C	G	3.717e^-4	0.724	INTRON luna
2L	468431	2L_468431_SNP [dm3] 2L_468431_SNP [dm6]	T	C	3.718e^-4	0.724	INTRON CG4297
X	4763812	X_4763812_SNP [dm3] X_4869779_SNP [dm6]	T	C	3.719e^-4	0.724	INTRON CG42594	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	3240976	X_3240976_SNP [dm3] X_3346943_SNP [dm6]	A	G	3.727e^-4	0.724	INTRON CR44886	TF binding site BDTNP1_TFBS_twi
2L	5790636	2L_5790636_SNP [dm3] 2L_5790636_SNP [dm6]	C	T	3.733e^-4	0.724	INTRON CG9171	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15266289	2R_15266289_SNP [dm3] 2R_19378784_SNP [dm6]	T	C	3.735e^-4	0.724	INTRON CG10062	TF binding site mE1_TFBS_cad
2R	18584511	2R_18584511_SNP [dm3] 2R_22697006_SNP [dm6]	T	C	3.736e^-4	0.724	INTRON robo	TF binding site BDTNP1_TFBS_twi
2L	12839366	2L_12839366_SNP [dm3] 2L_12839366_SNP [dm6]	G	T	3.736e^-4	0.724	INTERGENIC
2L	6593802	2L_6593802_SNP [dm3] 2L_6593802_SNP [dm6]	G	C	3.746e^-4	0.724	INTRON CG11319
3L	9526641	3L_9526641_SNP [dm3] 3L_9533541_SNP [dm6]	C	G	3.753e^-4	0.724	INTERGENIC
X	1605933	X_1605933_SNP [dm3] X_1711900_SNP [dm6]	A	G	3.753e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7440905	2L_7440905_SNP [dm3] 2L_7440905_SNP [dm6]	C	A	3.770e^-4	0.724	UTR_5_PRIME CG5973 INTRON CG5973
3L	22967122	3L_22967122_SNP [dm3] 3L_22974022_SNP [dm6]	C	A	3.771e^-4	0.724	INTERGENIC	transposable element FlyBase
3R	15089474	3R_15089474_SNP [dm3] 3R_19263752_SNP [dm6]	C	T	3.779e^-4	0.724	INTERGENIC
2R	9785283	2R_9785283_DEL [dm3] 2R_13897778_DEL [dm6]	AG	A	3.783e^-4	0.724	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	3027590	3L_3027590_SNP [dm3] 3L_3027590_SNP [dm6]	A	G	3.784e^-4	0.724	INTERGENIC
2R	15285922	2R_15285922_DEL [dm3] 2R_19398417_DEL [dm6]	TT	T	3.787e^-4	0.724	UTR_3_PRIME hts DOWNSTREAM hts
3L	14989650	3L_14989650_SNP [dm3] 3L_14996550_SNP [dm6]	C	T	3.809e^-4	0.724	SYNONYMOUS_CODING Zip71B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17487005	X_17487005_SNP [dm3] X_17592972_SNP [dm6]	G	A	3.811e^-4	0.724	INTRON CG12991
3L	18795494	3L_18795494_SNP [dm3] 3L_18802394_SNP [dm6]	C	G	3.811e^-4	0.724	UTR_3_PRIME CG14073
2L	150932	2L_150932_SNP [dm3] 2L_150932_SNP [dm6]	T	G	3.813e^-4	0.724	INTRON CG11455 & 1 other
2R	5316385	2R_5316385_SNP [dm3] 2R_9428880_SNP [dm6]	C	A	3.815e^-4	0.724	INTRON Pdk
2R	10688716	2R_10688716_SNP [dm3] 2R_14801211_SNP [dm6]	G	T	3.816e^-4	0.724	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	11735628	3L_11735628_SNP [dm3] 3L_11742528_SNP [dm6]	T	C	3.823e^-4	0.724	INTRON CG6024
3L	1909694	3L_1909694_SNP [dm3] 3L_1909694_SNP [dm6]	G	T	3.824e^-4	0.724	INTRON CG1887
X	17680887	X_17680887_SNP [dm3] X_17786854_SNP [dm6]	C	T	3.846e^-4	0.724	INTERGENIC
2L	9046750	2L_9046750_SNP [dm3] 2L_9046750_SNP [dm6]	C	T	3.850e^-4	0.724	INTERGENIC
3L	14989507	3L_14989507_SNP [dm3] 3L_14996407_SNP [dm6]	T	C	3.868e^-4	0.724	NON_SYNONYMOUS_CODING Zip71B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	19552037	3R_19552037_SNP [dm3] 3R_23726315_SNP [dm6]	G	A	3.880e^-4	0.724	INTRON CG10365
3R	500404	3R_500404_SNP [dm3] 3R_4674682_SNP [dm6]	A	G	3.886e^-4	0.724	DOWNSTREAM CR44157 INTRON CG43427
X	19357718	X_19357718_SNP [dm3] X_19463685_SNP [dm6]	A	G	3.890e^-4	0.724	INTRON kek5
2L	16915649	2L_16915649_SNP [dm3] 2L_16915649_SNP [dm6]	A	T	3.893e^-4	0.724	INTRON tweek
3R	21410221	3R_21410221_SNP [dm3] 3R_25584499_SNP [dm6]	A	G	3.896e^-4	0.724	UTR_5_PRIME msi INTRON msi
X	12584850	X_12584850_SNP [dm3] X_12690817_SNP [dm6]	C	A	3.901e^-4	0.724	SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12800142	2L_12800142_DEL [dm3] 2L_12800142_DEL [dm6]	GC	G	3.903e^-4	0.724	INTERGENIC
3R	17874087	3R_17874087_SNP [dm3] 3R_22048365_SNP [dm6]	C	A	3.909e^-4	0.724	INTRON how	TF binding site BDTNP1_TFBS_twi
3R	17737798	3R_17737798_SNP [dm3] 3R_21912076_SNP [dm6]	G	C	3.921e^-4	0.724	SYNONYMOUS_CODING CG6690
2L	21951288	2L_21951288_SNP [dm3] 2L_21951288_SNP [dm6]	C	T	3.926e^-4	0.724	UPSTREAM CR45704 DOWNSTREAM CR45703 INTERGENIC
3R	632820	3R_632820_SNP [dm3] 3R_4807098_SNP [dm6]	T	C	3.929e^-4	0.724	UPSTREAM ctrip INTRON ctrip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	23178852	3R_23178852_DEL [dm3] 3R_27353130_DEL [dm6]	CTT	C	3.931e^-4	0.724	INTRON CG42534
2R	5316383	2R_5316383_SNP [dm3] 2R_9428878_SNP [dm6]	A	G	3.932e^-4	0.724	INTRON Pdk
3R	25110282	3R_25110282_SNP [dm3] 3R_29284560_SNP [dm6]	G	C	3.937e^-4	0.724	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2L	13983734	2L_13983734_SNP [dm3] 2L_13983734_SNP [dm6]	G	A	3.941e^-4	0.724	SYNONYMOUS_CODING rk DOWNSTREAM NimC2
X	3602882	X_3602882_SNP [dm3] X_3708849_SNP [dm6]	C	T	3.944e^-4	0.724	SYNONYMOUS_CODING Rala
3R	19111378	3R_19111378_SNP [dm3] 3R_23285656_SNP [dm6]	T	C	3.948e^-4	0.724	DOWNSTREAM CG17083 INTRON CG6763	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1923010	2L_1923010_SNP [dm3] 2L_1923010_SNP [dm6]	A	C	3.962e^-4	0.724	INTRON CG7337
2L	5796624	2L_5796624_SNP [dm3] 2L_5796624_SNP [dm6]	C	A	3.965e^-4	0.724	INTRON CG9171
3R	22082168	3R_22082168_SNP [dm3] 3R_26256446_SNP [dm6]	T	C	3.967e^-4	0.724	INTRON Ald	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10558045	3L_10558045_SNP [dm3] 3L_10564945_SNP [dm6]	C	T	3.971e^-4	0.724	INTRON A2bp1
X	4915567	X_4915567_SNP [dm3] X_5021534_SNP [dm6]	G	A	3.986e^-4	0.724	INTRON CR44833	regulatory region REDfly_CRMs
2L	11154728	2L_11154728_SNP [dm3] 2L_11154728_SNP [dm6]	C	A	3.990e^-4	0.724	INTRON CG6287

By genomic position
Variant impact
Gene name

mn_Resp_MethylSalicy phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results