DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.645e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.0407	0.0804

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2376 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	1819492	2L_1819492_SNP [dm3] 2L_1819492_SNP [dm6]	C	G	7.085e^-9	0.013	INTERGENIC
2L	1819570	2L_1819570_SNP [dm3] 2L_1819570_SNP [dm6]	G	T	1.182e^-7	0.065	INTERGENIC
2L	1819505	2L_1819505_SNP [dm3] 2L_1819505_SNP [dm6]	A	G	1.695e^-7	0.065	INTERGENIC
2L	1819507	2L_1819507_SNP [dm3] 2L_1819507_SNP [dm6]	A	C	1.695e^-7	0.065	INTERGENIC
X	22238981	X_22238981_SNP [dm3] X_22837145_SNP [dm6]	A	G	1.726e^-7	0.065	UPSTREAM fog INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1819455	2L_1819455_SNP [dm3] 2L_1819455_SNP [dm6]	A	G	3.124e^-7	0.098	INTERGENIC
2R	15042767	2R_15042767_SNP [dm3] 2R_19155262_SNP [dm6]	G	C	1.033e^-6	0.277	UTR_5_PRIME ena INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	5381650	X_5381650_SNP [dm3] X_5487617_SNP [dm6]	A	C	1.441e^-6	0.338	INTRON SPR
2L	1819239	2L_1819239_SNP [dm3] 2L_1819239_SNP [dm6]	T	A	2.103e^-6	0.438	INTERGENIC
3R	24438416	3R_24438416_SNP [dm3] 3R_28612694_SNP [dm6]	G	A	3.347e^-6	0.591	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	22238982	X_22238982_SNP [dm3] X_22837146_SNP [dm6]	A	C	3.466e^-6	0.591	UPSTREAM fog INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15042766	2R_15042766_SNP [dm3] 2R_19155261_SNP [dm6]	T	A	4.007e^-6	0.626	UTR_5_PRIME ena INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	24438412	3R_24438412_SNP [dm3] 3R_28612690_SNP [dm6]	A	G	4.356e^-6	0.628	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	7886215	2R_7886215_SNP [dm3] 2R_11998710_SNP [dm6]	C	A	5.431e^-6	0.691	INTERGENIC
3L	13123166	3L_13123166_SNP [dm3] 3L_13130066_SNP [dm6]	T	A	6.029e^-6	0.691	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6213965	2L_6213965_SNP [dm3] 2L_6213965_SNP [dm6]	T	C	6.501e^-6	0.691	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	22421438	3R_22421438_SNP [dm3] 3R_26595716_SNP [dm6]	C	A	6.756e^-6	0.691	UTR_3_PRIME scrib DOWNSTREAM scrib INTRON scrib
2R	15042781	2R_15042781_SNP [dm3] 2R_19155276_SNP [dm6]	A	G	7.092e^-6	0.691	UTR_5_PRIME ena INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	15022541	2L_15022541_SNP [dm3] 2L_15022541_SNP [dm6]	T	G	7.283e^-6	0.691	INTRON GABA-B-R1
2L	1819210	2L_1819210_SNP [dm3] 2L_1819210_SNP [dm6]	G	A	7.652e^-6	0.691	INTERGENIC
3L	8460174	3L_8460174_SNP [dm3] 3L_8467074_SNP [dm6]	G	T	9.068e^-6	0.691	SYNONYMOUS_CODING Gug	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1034963	2L_1034963_SNP [dm3] 2L_1034963_SNP [dm6]	A	G	9.259e^-6	0.691	UPSTREAM IA-2 INTRON IA-2
3R	22421362	3R_22421362_SNP [dm3] 3R_26595640_SNP [dm6]	T	C	9.511e^-6	0.691	UTR_3_PRIME scrib DOWNSTREAM scrib INTRON scrib
3R	22421387	3R_22421387_SNP [dm3] 3R_26595665_SNP [dm6]	C	T	9.511e^-6	0.691	UTR_3_PRIME scrib DOWNSTREAM scrib INTRON scrib
3R	24437651	3R_24437651_SNP [dm3] 3R_28611929_SNP [dm6]	G	A	9.907e^-6	0.691	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	21982681	X_21982681_SNP [dm3] X_22580845_SNP [dm6]	A	T	1.000e^-5	0.691	INTERGENIC
3L	11430803	3L_11430803_SNP [dm3] 3L_11437703_SNP [dm6]	A	T	1.054e^-5	0.691	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	8184815	X_8184815_DEL [dm3] X_8290782_DEL [dm6]	AA	A	1.064e^-5	0.691	INTRON nAChRalpha3	TF binding site mE1_TFBS_cad
2R	9416128	2R_9416128_SNP [dm3] 2R_13528623_SNP [dm6]	C	T	1.070e^-5	0.691	INTRON Vmat
3R	22418959	3R_22418959_SNP [dm3] 3R_26593237_SNP [dm6]	G	A	1.105e^-5	0.691	INTRON scrib
3R	22419500	3R_22419500_SNP [dm3] 3R_26593778_SNP [dm6]	A	G	1.163e^-5	0.697	INTRON scrib
2L	10723771	2L_10723771_SNP [dm3] 2L_10723771_SNP [dm6]	T	A	1.189e^-5	0.697	UPSTREAM CG6431 INTERGENIC
3L	3494256	3L_3494256_SNP [dm3] 3L_3494256_SNP [dm6]	A	T	1.244e^-5	0.697	INTRON CG42324	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20784156	2L_20784156_SNP [dm3] 2L_20784156_SNP [dm6]	A	G	1.264e^-5	0.697	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19974780	2R_19974780_SNP [dm3] 2R_24087257_SNP [dm6]	A	C	1.438e^-5	0.752	DOWNSTREAM CG16786 INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7886263	2R_7886263_SNP [dm3] 2R_11998758_SNP [dm6]	T	G	1.446e^-5	0.752	INTERGENIC
2L	9026235	2L_9026235_SNP [dm3] 2L_9026235_SNP [dm6]	G	T	1.494e^-5	0.752	UPSTREAM CG9582 INTRON CG9582 EXON CR44352	TF binding site BDTNP1_TFBS_twi
2R	7886273	2R_7886273_DEL [dm3] 2R_11998768_DEL [dm6]	TT	T	1.588e^-5	0.752	INTERGENIC
2R	8937416	2R_8937416_SNP [dm3] 2R_13049911_SNP [dm6]	C	A	1.598e^-5	0.752	UPSTREAM CG13324 INTERGENIC
2L	6617477	2L_6617477_SNP [dm3] 2L_6617477_SNP [dm6]	T	C	1.604e^-5	0.752	NON_SYNONYMOUS_CODING CG11320 DOWNSTREAM CG11050	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15119302	2L_15119302_SNP [dm3] 2L_15119302_SNP [dm6]	T	C	1.666e^-5	0.762	UPSTREAM CR43853 INTERGENIC
3L	9138631	3L_9138631_SNP [dm3] 3L_9145531_SNP [dm6]	A	G	1.718e^-5	0.766	UTR_3_PRIME nwk DOWNSTREAM mir-4940 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	7767273	X_7767273_SNP [dm3] X_7873240_SNP [dm6]	A	G	1.816e^-5	0.766	UPSTREAM dec-1 EXON CR43615	TF binding site mE1_TFBS_chinmo
2R	9910729	2R_9910729_INS [dm3] 2R_14023224_INS [dm6]	T	TT	2.016e^-5	0.766	INTRON mam
2L	4227958	2L_4227958_SNP [dm3] 2L_4227958_SNP [dm6]	T	A	2.099e^-5	0.766	UPSTREAM CG3702 & 1 other INTRON RpL40	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
3R	22419658	3R_22419658_SNP [dm3] 3R_26593936_SNP [dm6]	C	T	2.150e^-5	0.766	INTRON scrib
2R	17437181	2R_17437181_SNP [dm3] 2R_21549676_SNP [dm6]	T	A	2.162e^-5	0.766	INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	7429271	3L_7429271_SNP [dm3] 3L_7436171_SNP [dm6]	A	C	2.209e^-5	0.766	UPSTREAM Rac2 DOWNSTREAM CG14835 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	9911377	2R_9911377_SNP [dm3] 2R_14023872_SNP [dm6]	A	G	2.253e^-5	0.766	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	13085839	3L_13085839_DEL [dm3] 3L_13092739_DEL [dm6]	ACCGCTG	A	2.261e^-5	0.766	INTERGENIC
3L	6669465	3L_6669465_SNP [dm3] 3L_6676365_SNP [dm6]	T	G	2.323e^-5	0.766	INTERGENIC
3R	23496197	3R_23496197_SNP [dm3] 3R_27670475_SNP [dm6]	C	T	2.338e^-5	0.766	SYNONYMOUS_CODING unc80
3L	7429285	3L_7429285_SNP [dm3] 3L_7436185_SNP [dm6]	C	T	2.349e^-5	0.766	UPSTREAM Rac2 DOWNSTREAM CG14835 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	8009631	2R_8009631_SNP [dm3] 2R_12122126_SNP [dm6]	T	A	2.351e^-5	0.766	INTERGENIC
3R	25356341	3R_25356341_SNP [dm3] 3R_29530619_SNP [dm6]	G	A	2.363e^-5	0.766	INTERGENIC
3L	13249262	3L_13249262_SNP [dm3] 3L_13256162_SNP [dm6]	A	T	2.496e^-5	0.766	INTRON caps
3L	7558943	3L_7558943_SNP [dm3] 3L_7565843_SNP [dm6]	G	A	2.568e^-5	0.766	NON_SYNONYMOUS_CODING frac	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
X	22237505	X_22237505_SNP [dm3] X_22835669_SNP [dm6]	G	C	2.738e^-5	0.766	INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6767731	2R_6767731_SNP [dm3] 2R_10880226_SNP [dm6]	T	A	2.742e^-5	0.766	UTR_5_PRIME Pex6 UPSTREAM Taf5 INTRON Pex6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
2R	6769708	2R_6769708_SNP [dm3] 2R_10882203_SNP [dm6]	C	T	2.742e^-5	0.766	SYNONYMOUS_CODING Pex6	TF binding site mE1_TFBS_sens
2L	21607766	2L_21607766_SNP [dm3] 2L_21607766_SNP [dm6]	G	T	2.784e^-5	0.766	INTERGENIC
2L	19695783	2L_19695783_SNP [dm3] 2L_19695783_SNP [dm6]	G	A	2.811e^-5	0.766	INTRON Lar
2R	9671583	2R_9671583_SNP [dm3] 2R_13784078_SNP [dm6]	C	A	2.815e^-5	0.766	INTRON Cpr50Ca EXON CR43810
3L	16250996	3L_16250996_SNP [dm3] 3L_16257896_SNP [dm6]	A	T	2.830e^-5	0.766	UPSTREAM CG13054 INTERGENIC
3R	12742238	3R_12742238_SNP [dm3] 3R_16916516_SNP [dm6]	C	T	2.896e^-5	0.766	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2R	6657127	2R_6657127_SNP [dm3] 2R_10769622_SNP [dm6]	T	C	2.914e^-5	0.766	INTRON CG33144
2L	1083654	2L_1083654_SNP [dm3] 2L_1083654_SNP [dm6]	T	A	2.986e^-5	0.766	UTR_3_PRIME Atg4a & 1 other DOWNSTREAM Atg4a
2L	20601780	2L_20601780_SNP [dm3] 2L_20601780_SNP [dm6]	G	A	3.130e^-5	0.766	INTRON CR44909	TF binding site mE1_TFBS_HSA
2R	7886430	2R_7886430_INS [dm3] 2R_11998925_INS [dm6]	T	TCAAATGGTAAGATT...	3.130e^-5	0.766	INTERGENIC
2R	7886411	2R_7886411_SNP [dm3] 2R_11998906_SNP [dm6]	A	G	3.135e^-5	0.766	INTERGENIC
2L	4156141	2L_4156141_SNP [dm3] 2L_4156141_SNP [dm6]	G	T	3.139e^-5	0.766	INTERGENIC
2R	7892892	2R_7892892_SNP [dm3] 2R_12005387_SNP [dm6]	A	G	3.164e^-5	0.766	SYNONYMOUS_CODING otk	TF binding site mE1_TFBS_chinmo
3R	22421412	3R_22421412_SNP [dm3] 3R_26595690_SNP [dm6]	T	C	3.195e^-5	0.766	UTR_3_PRIME scrib DOWNSTREAM scrib INTRON scrib
2R	6917513	2R_6917513_SNP [dm3] 2R_11030008_SNP [dm6]	G	C	3.246e^-5	0.766	INTRON luna	insulator Insulator_Class_II.mE01
X	7767265	X_7767265_SNP [dm3] X_7873232_SNP [dm6]	C	A	3.289e^-5	0.766	UPSTREAM dec-1 EXON CR43615	TF binding site mE1_TFBS_chinmo
3R	11725755	3R_11725755_SNP [dm3] 3R_15900033_SNP [dm6]	C	G	3.383e^-5	0.766	INTRON glob1
3R	19231315	3R_19231315_SNP [dm3] 3R_23405593_SNP [dm6]	T	A	3.384e^-5	0.766	NON_SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
2L	8049648	2L_8049648_SNP [dm3] 2L_8049648_SNP [dm6]	C	T	3.402e^-5	0.766	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_cad
2R	7886396	2R_7886396_SNP [dm3] 2R_11998891_SNP [dm6]	A	G	3.451e^-5	0.766	INTERGENIC
2R	12342906	2R_12342906_SNP [dm3] 2R_16455401_SNP [dm6]	T	G	3.470e^-5	0.766	INTERGENIC
2R	7442440	2R_7442440_SNP [dm3] 2R_11554935_SNP [dm6]	C	G	3.516e^-5	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	24437441	3R_24437441_SNP [dm3] 3R_28611719_SNP [dm6]	A	C	3.539e^-5	0.766	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2907826	3L_2907826_SNP [dm3] 3L_2907826_SNP [dm6]	C	A	3.622e^-5	0.766	INTRON Shab
2R	7886336	2R_7886336_SNP [dm3] 2R_11998831_SNP [dm6]	G	A	3.676e^-5	0.766	INTERGENIC
3R	24437480	3R_24437480_SNP [dm3] 3R_28611758_SNP [dm6]	G	A	3.777e^-5	0.766	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17566481	3R_17566481_DEL [dm3] 3R_21740759_DEL [dm6]	GA	G	3.884e^-5	0.766	INTRON CG5849	TF binding site mE1_TFBS_HSA
X	16548649	X_16548649_SNP [dm3] X_16654616_SNP [dm6]	C	G	3.907e^-5	0.766	SYNONYMOUS_CODING CG9723 UPSTREAM r	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_sens
2L	19696476	2L_19696476_SNP [dm3] 2L_19696476_SNP [dm6]	A	T	3.916e^-5	0.766	INTRON Lar
2R	15839197	2R_15839197_SNP [dm3] 2R_19951692_SNP [dm6]	G	A	3.971e^-5	0.766	SYNONYMOUS_CODING CG10822
X	20520899	X_20520899_SNP [dm3] X_20649872_SNP [dm6]	T	A	4.044e^-5	0.766	INTERGENIC
2R	4791406	2R_4791406_SNP [dm3] 2R_8903901_SNP [dm6]	T	C	4.062e^-5	0.766	UTR_3_PRIME Ggamma1 DOWNSTREAM Ggamma1 & 1 other
3R	26107444	3R_26107444_SNP [dm3] 3R_30281722_SNP [dm6]	C	T	4.073e^-5	0.766	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	16250976	3L_16250976_SNP [dm3] 3L_16257876_SNP [dm6]	G	T	4.082e^-5	0.766	UPSTREAM CG13054 INTERGENIC
2R	7883760	2R_7883760_SNP [dm3] 2R_11996255_SNP [dm6]	G	T	4.208e^-5	0.766	UPSTREAM CR45319 DOWNSTREAM CR45318 INTERGENIC
2R	7883794	2R_7883794_SNP [dm3] 2R_11996289_SNP [dm6]	C	G	4.235e^-5	0.766	UPSTREAM CR45319 DOWNSTREAM CR45318 INTERGENIC
3L	7425049	3L_7425049_INS [dm3] 3L_7431949_INS [dm6]	G	GATGGGGGCGGTGG...	4.240e^-5	0.766	INTRON CG42458
X	14699685	X_14699685_SNP [dm3] X_14805652_SNP [dm6]	T	G	4.261e^-5	0.766	INTRON rut
2L	1083721	2L_1083721_SNP [dm3] 2L_1083721_SNP [dm6]	T	A	4.282e^-5	0.766	UTR_3_PRIME Atg4a & 1 other DOWNSTREAM Atg4a
X	8184820	X_8184820_SNP [dm3] X_8290787_SNP [dm6]	G	A	4.292e^-5	0.766	INTRON nAChRalpha3	TF binding site mE1_TFBS_cad
3R	24438278	3R_24438278_SNP [dm3] 3R_28612556_SNP [dm6]	G	C	4.296e^-5	0.766	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13249171	3L_13249171_SNP [dm3] 3L_13256071_SNP [dm6]	C	A	4.368e^-5	0.766	INTRON caps
2R	6121836	2R_6121836_SNP [dm3] 2R_10234331_SNP [dm6]	C	G	4.374e^-5	0.766	UTR_5_PRIME Hr46 & 1 other INTRON Hr46	TF binding site BDTNP1_TFBS_dl
2L	20584156	2L_20584156_SNP [dm3] 2L_20584156_SNP [dm6]	C	T	4.509e^-5	0.766	INTRON CR44909
2R	19974746	2R_19974746_DEL [dm3] 2R_24087223_DEL [dm6]	ATGATTTCTGAA...	A	4.540e^-5	0.766	DOWNSTREAM CG16786 INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14311532	2R_14311532_SNP [dm3] 2R_18424027_SNP [dm6]	C	A	4.622e^-5	0.766	INTRON CG5174
3L	23121169	3L_23121169_SNP [dm3] 3L_23128069_SNP [dm6]	A	C	4.826e^-5	0.766	INTRON CG33217
2L	20589231	2L_20589231_SNP [dm3] 2L_20589231_SNP [dm6]	C	G	4.845e^-5	0.766	INTRON CR44909
2L	1714959	2L_1714959_SNP [dm3] 2L_1714959_SNP [dm6]	A	G	4.870e^-5	0.766	INTRON frtz	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	8032907	3L_8032907_SNP [dm3] 3L_8039807_SNP [dm6]	A	C	4.872e^-5	0.766	INTRON nmo
2R	7886325	2R_7886325_SNP [dm3] 2R_11998820_SNP [dm6]	T	G	4.885e^-5	0.766	INTERGENIC
X	22241463	X_22241463_SNP [dm3] X_22839627_SNP [dm6]	G	A	4.886e^-5	0.766	INTRON fog & 1 other
3L	11464499	3L_11464499_SNP [dm3] 3L_11471399_SNP [dm6]	A	G	4.924e^-5	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7886438	2R_7886438_DEL [dm3] 2R_11998933_DEL [dm6]	TAAG	T	5.015e^-5	0.766	INTERGENIC
X	2421042	X_2421042_INS [dm3] X_2527009_INS [dm6]	A	AA	5.066e^-5	0.766	INTRON trol	TF binding site mE1_TFBS_bab1
2R	14311589	2R_14311589_SNP [dm3] 2R_18424084_SNP [dm6]	C	T	5.068e^-5	0.766	INTRON CG5174
2R	6781718	2R_6781718_SNP [dm3] 2R_10894213_SNP [dm6]	C	T	5.075e^-5	0.766	UTR_5_PRIME cag UPSTREAM CG12942 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	1035118	2L_1035118_SNP [dm3] 2L_1035118_SNP [dm6]	C	G	5.156e^-5	0.766	UPSTREAM IA-2 INTRON IA-2
2L	20625370	2L_20625370_SNP [dm3] 2L_20625370_SNP [dm6]	G	C	5.234e^-5	0.766	EXON CR44909
2L	2673120	2L_2673120_SNP [dm3] 2L_2673120_SNP [dm6]	T	A	5.235e^-5	0.766	DOWNSTREAM Gr23a INTERGENIC
3L	16948414	3L_16948414_SNP [dm3] 3L_16955314_SNP [dm6]	C	A	5.307e^-5	0.766	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl
2R	6781977	2R_6781977_SNP [dm3] 2R_10894472_SNP [dm6]	T	C	5.320e^-5	0.766	UTR_5_PRIME CG12942 UPSTREAM cag	TF binding site BDTNP1_TFBS_dl
3R	24417294	3R_24417294_DEL [dm3] 3R_28591572_DEL [dm6]	TTGGAGT	T	5.345e^-5	0.766	DOWNSTREAM MRE23 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	7886412	2R_7886412_SNP [dm3] 2R_11998907_SNP [dm6]	A	G	5.441e^-5	0.766	INTERGENIC
2L	20613460	2L_20613460_SNP [dm3] 2L_20613460_SNP [dm6]	A	T	5.492e^-5	0.766	INTRON CR44909
3R	19732163	3R_19732163_SNP [dm3] 3R_23906441_SNP [dm6]	C	G	5.532e^-5	0.766	INTRON sba
2R	6917959	2R_6917959_SNP [dm3] 2R_11030454_SNP [dm6]	C	T	5.565e^-5	0.766	INTRON luna
3R	27212638	3R_27212638_SNP [dm3] 3R_31386916_SNP [dm6]	A	T	5.583e^-5	0.766	INTRON CG1607
3R	27265726	3R_27265726_SNP [dm3] 3R_31440004_SNP [dm6]	G	A	5.593e^-5	0.766	INTRON Gprk2
3R	24427975	3R_24427975_SNP [dm3] 3R_28602253_SNP [dm6]	G	A	5.692e^-5	0.766	UPSTREAM snoRNA:Psi28S-3305b & 1 other DOWNSTREAM snoRNA:Psi28S-3405a & 2 others INTRON Hrb98DE EXON snoRNA:Psi28S-3405c	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	7886265	2R_7886265_SNP [dm3] 2R_11998760_SNP [dm6]	A	T	5.750e^-5	0.766	INTERGENIC
2R	19708514	2R_19708514_SNP [dm3] 2R_23820991_SNP [dm6]	A	G	5.770e^-5	0.766	INTRON CG5549	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12106831	2L_12106831_SNP [dm3] 2L_12106831_SNP [dm6]	G	A	5.846e^-5	0.766	UTR_3_PRIME Aats-thr DOWNSTREAM Rab6	TF binding site mE1_TFBS_cad
3R	24417205	3R_24417205_SNP [dm3] 3R_28591483_SNP [dm6]	G	A	5.955e^-5	0.766	DOWNSTREAM MRE23 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_cnc
3R	26113928	3R_26113928_SNP [dm3] 3R_30288206_SNP [dm6]	C	T	5.974e^-5	0.766	INTRON hdc
3L	2419365	3L_2419365_SNP [dm3] 3L_2419365_SNP [dm6]	T	A	5.976e^-5	0.766	INTRON CG45186
2L	3897202	2L_3897202_SNP [dm3] 2L_3897202_SNP [dm6]	C	A	6.018e^-5	0.766	INTRON capu
2L	6617117	2L_6617117_SNP [dm3] 2L_6617117_SNP [dm6]	C	T	6.026e^-5	0.766	UTR_3_PRIME CG11050 DOWNSTREAM CG11320
2R	12025748	2R_12025748_SNP [dm3] 2R_16138243_SNP [dm6]	T	A	6.044e^-5	0.766	UPSTREAM Got1 DOWNSTREAM spin INTERGENIC
2R	7886314	2R_7886314_SNP [dm3] 2R_11998809_SNP [dm6]	A	C	6.072e^-5	0.766	INTERGENIC
2L	21764585	2L_21764585_SNP [dm3] 2L_21764585_SNP [dm6]	G	A	6.076e^-5	0.766	INTRON CG31612
X	2503580	X_2503580_SNP [dm3] X_2609547_SNP [dm6]	T	C	6.104e^-5	0.766	SYNONYMOUS_CODING CG8636 UPSTREAM Bzd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	19973897	2R_19973897_SNP [dm3] 2R_24086374_SNP [dm6]	T	C	6.220e^-5	0.766	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	9910777	2R_9910777_SNP [dm3] 2R_14023272_SNP [dm6]	T	G	6.229e^-5	0.766	INTRON mam
2R	7884943	2R_7884943_SNP [dm3] 2R_11997438_SNP [dm6]	C	G	6.240e^-5	0.766	INTERGENIC
2R	17654081	2R_17654081_SNP [dm3] 2R_21766576_SNP [dm6]	C	T	6.289e^-5	0.766	NON_SYNONYMOUS_CODING CG30395 SPLICE_SITE_REGION CG30395 INTRON CG30395
2R	8721208	2R_8721208_SNP [dm3] 2R_12833703_SNP [dm6]	C	T	6.378e^-5	0.766	INTERGENIC
X	2565606	X_2565606_SNP [dm3] X_2671573_SNP [dm6]	T	C	6.380e^-5	0.766	INTRON sgg
2R	7886340	2R_7886340_MNP [dm3] 2R_11998835_MNP [dm6]	AGC	GTA	6.453e^-5	0.766	INTERGENIC
2R	9607020	2R_9607020_SNP [dm3] 2R_13719515_SNP [dm6]	C	A	6.458e^-5	0.766	INTRON fas
3L	13249159	3L_13249159_SNP [dm3] 3L_13256059_SNP [dm6]	G	T	6.490e^-5	0.766	INTRON caps
3R	24438275	3R_24438275_SNP [dm3] 3R_28612553_SNP [dm6]	T	C	6.508e^-5	0.766	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5611866	3L_5611866_SNP [dm3] 3L_5618766_SNP [dm6]	T	A	6.551e^-5	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4227824	2L_4227824_SNP [dm3] 2L_4227824_SNP [dm6]	T	G	6.668e^-5	0.766	UPSTREAM CG3702 INTRON RpL40	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2R	12342782	2R_12342782_DEL [dm3] 2R_16455277_DEL [dm6]	TATGGTTAT	T	6.674e^-5	0.766	INTERGENIC
2R	9634000	2R_9634000_SNP [dm3] 2R_13746495_SNP [dm6]	C	T	6.706e^-5	0.766	SYNONYMOUS_CODING fas	TF binding site mE1_TFBS_cad
2R	9910997	2R_9910997_SNP [dm3] 2R_14023492_SNP [dm6]	C	A	6.710e^-5	0.766	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	6773833	2R_6773833_SNP [dm3] 2R_10886328_SNP [dm6]	A	G	6.861e^-5	0.766	UTR_3_PRIME CG18004 UPSTREAM CG30020 DOWNSTREAM mir-1008	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2565616	X_2565616_SNP [dm3] X_2671583_SNP [dm6]	A	C	6.863e^-5	0.766	INTRON sgg
2R	9911395	2R_9911395_SNP [dm3] 2R_14023890_SNP [dm6]	G	T	6.914e^-5	0.766	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	9773394	2R_9773394_SNP [dm3] 2R_13885889_SNP [dm6]	C	T	6.940e^-5	0.766	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
2L	1487454	2L_1487454_SNP [dm3] 2L_1487454_SNP [dm6]	A	C	6.956e^-5	0.766	INTERGENIC
2L	9527248	2L_9527248_SNP [dm3] 2L_9527248_SNP [dm6]	G	A	7.072e^-5	0.766	INTRON Oatp30B
2R	7890694	2R_7890694_SNP [dm3] 2R_12003189_SNP [dm6]	G	C	7.119e^-5	0.766	SYNONYMOUS_CODING otk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7883722	2R_7883722_SNP [dm3] 2R_11996217_SNP [dm6]	T	A	7.174e^-5	0.766	UPSTREAM CR45319 DOWNSTREAM CR45318 INTERGENIC
2L	13916204	2L_13916204_INS [dm3] 2L_13916204_INS [dm6]	C	TG	7.270e^-5	0.766	INTRON Ance-3	TF binding site BDTNP1_TFBS_twi
2R	9607134	2R_9607134_SNP [dm3] 2R_13719629_SNP [dm6]	T	C	7.301e^-5	0.766	INTRON fas
3L	13249178	3L_13249178_INS [dm3] 3L_13256078_INS [dm6]	A	AGATCGGATTGCA...	7.376e^-5	0.766	INTRON caps
2R	7901686	2R_7901686_SNP [dm3] 2R_12014181_SNP [dm6]	C	G	7.402e^-5	0.766	UPSTREAM CR44306 INTRON otk
2R	7886368	2R_7886368_SNP [dm3] 2R_11998863_SNP [dm6]	A	T	7.405e^-5	0.766	INTERGENIC
3R	20699943	3R_20699943_SNP [dm3] 3R_24874221_SNP [dm6]	G	A	7.410e^-5	0.766	SYNONYMOUS_CODING CG3744	TF binding site mE1_TFBS_inv
2R	18919497	2R_18919497_SNP [dm3] 2R_23031974_SNP [dm6]	T	C	7.552e^-5	0.766	INTRON twi & 1 other
3L	3812157	3L_3812157_SNP [dm3] 3L_3812157_SNP [dm6]	C	T	7.568e^-5	0.766	SYNONYMOUS_CODING CG12006	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26110943	3R_26110943_SNP [dm3] 3R_30285221_SNP [dm6]	T	C	7.584e^-5	0.766	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	22443547	3R_22443547_SNP [dm3] 3R_26617825_SNP [dm6]	G	A	7.591e^-5	0.766	INTERGENIC
3R	18184962	3R_18184962_SNP [dm3] 3R_22359240_SNP [dm6]	C	G	7.897e^-5	0.766	INTRON Sar1
2R	17181181	2R_17181181_SNP [dm3] 2R_21293676_SNP [dm6]	C	T	7.938e^-5	0.766	UPSTREAM RpL29 & 1 other DOWNSTREAM CG9752 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
2L	9349936	2L_9349936_SNP [dm3] 2L_9349936_SNP [dm6]	C	T	7.949e^-5	0.766	UTR_3_PRIME CG43350 UPSTREAM CR44802 & 1 other DOWNSTREAM CG43350
2R	11588930	2R_11588930_SNP [dm3] 2R_15701425_SNP [dm6]	G	A	7.981e^-5	0.766	SYNONYMOUS_CODING CG30080 UTR_5_PRIME CG42662	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7883726	2R_7883726_SNP [dm3] 2R_11996221_SNP [dm6]	G	T	7.994e^-5	0.766	UPSTREAM CR45319 DOWNSTREAM CR45318 INTERGENIC
2L	14561425	2L_14561425_SNP [dm3] 2L_14561425_SNP [dm6]	T	C	7.998e^-5	0.766	DOWNSTREAM CR44855 INTERGENIC	TF binding site mE1_TFBS_cad
2R	7899437	2R_7899437_SNP [dm3] 2R_12011932_SNP [dm6]	T	A	8.125e^-5	0.766	INTRON otk
2L	10723790	2L_10723790_SNP [dm3] 2L_10723790_SNP [dm6]	C	G	8.215e^-5	0.766	UPSTREAM CG6431 INTERGENIC
3L	4175467	3L_4175467_SNP [dm3] 3L_4175467_SNP [dm6]	A	G	8.255e^-5	0.766	SYNONYMOUS_CODING Teh4 INTRON CG18675
2L	12395189	2L_12395189_SNP [dm3] 2L_12395189_SNP [dm6]	A	G	8.326e^-5	0.766	INTRON bru-2
2L	20469378	2L_20469378_SNP [dm3] 2L_20469378_SNP [dm6]	G	A	8.464e^-5	0.766	INTRON CR44980	TF binding site BDTNP1_TFBS_twi
2R	18919535	2R_18919535_SNP [dm3] 2R_23032012_SNP [dm6]	T	C	8.467e^-5	0.766	INTRON twi & 1 other
2L	5866419	2L_5866419_DEL [dm3] 2L_5866419_DEL [dm6]	CAGCTCAATTTGATATCCTA...	A	8.502e^-5	0.766	INTRON rau
2L	5867202	2L_5867202_SNP [dm3] 2L_5867202_SNP [dm6]	C	T	8.560e^-5	0.766	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sens
2L	9201577	2L_9201577_SNP [dm3] 2L_9201577_SNP [dm6]	C	T	8.579e^-5	0.766	INTRON tai
2R	7883694	2R_7883694_SNP [dm3] 2R_11996189_SNP [dm6]	A	G	8.607e^-5	0.766	UPSTREAM CR45319 EXON CR45318
3L	16269817	3L_16269817_SNP [dm3] 3L_16276717_SNP [dm6]	T	A	8.622e^-5	0.766	UPSTREAM CG13065 INTERGENIC
3R	25356383	3R_25356383_SNP [dm3] 3R_29530661_SNP [dm6]	G	A	8.664e^-5	0.766	INTERGENIC
3R	7271689	3R_7271689_SNP [dm3] 3R_11445967_SNP [dm6]	C	T	8.685e^-5	0.766	UTR_5_PRIME sals INTRON CG17230 & 1 other
2R	6887511	2R_6887511_SNP [dm3] 2R_11000006_SNP [dm6]	T	G	8.803e^-5	0.766	INTRON luna
3R	18984686	3R_18984686_SNP [dm3] 3R_23158964_SNP [dm6]	A	G	8.817e^-5	0.766	SYNONYMOUS_CODING VhaAC39-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	20819879	3R_20819879_SNP [dm3] 3R_24994157_SNP [dm6]	C	T	8.859e^-5	0.766	INTRON tnc
3L	6662214	3L_6662214_SNP [dm3] 3L_6669114_SNP [dm6]	G	A	8.882e^-5	0.766	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	11606565	2R_11606565_SNP [dm3] 2R_15719060_SNP [dm6]	G	T	8.976e^-5	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4156230	2L_4156230_SNP [dm3] 2L_4156230_SNP [dm6]	G	A	9.019e^-5	0.766	INTERGENIC
3L	2780909	3L_2780909_SNP [dm3] 3L_2780909_SNP [dm6]	C	G	9.137e^-5	0.766	UTR_5_PRIME mRpS35 DOWNSTREAM Atg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_ttk
2L	19696102	2L_19696102_SNP [dm3] 2L_19696102_SNP [dm6]	C	T	9.143e^-5	0.766	INTRON Lar
2L	14562249	2L_14562249_SNP [dm3] 2L_14562249_SNP [dm6]	C	T	9.194e^-5	0.766	DOWNSTREAM CR44855 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11606562	2R_11606562_SNP [dm3] 2R_15719057_SNP [dm6]	C	T	9.245e^-5	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11606564	2R_11606564_SNP [dm3] 2R_15719059_SNP [dm6]	C	T	9.245e^-5	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11606568	2R_11606568_SNP [dm3] 2R_15719063_SNP [dm6]	C	T	9.245e^-5	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22421361	3R_22421361_SNP [dm3] 3R_26595639_SNP [dm6]	A	T	9.410e^-5	0.766	UTR_3_PRIME scrib DOWNSTREAM scrib INTRON scrib
3R	22421391	3R_22421391_SNP [dm3] 3R_26595669_SNP [dm6]	G	A	9.410e^-5	0.766	UTR_3_PRIME scrib DOWNSTREAM scrib INTRON scrib
3R	27265660	3R_27265660_SNP [dm3] 3R_31439938_SNP [dm6]	G	A	9.437e^-5	0.766	INTRON Gprk2
2R	7886372	2R_7886372_SNP [dm3] 2R_11998867_SNP [dm6]	G	A	9.445e^-5	0.766	INTERGENIC
3L	16948412	3L_16948412_SNP [dm3] 3L_16955312_SNP [dm6]	T	G	9.534e^-5	0.766	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl
3R	22418917	3R_22418917_SNP [dm3] 3R_26593195_SNP [dm6]	C	T	9.544e^-5	0.766	INTRON scrib
2R	7883735	2R_7883735_INS [dm3] 2R_11996230_INS [dm6]	T	TAAAT	9.563e^-5	0.766	UPSTREAM CR45319 DOWNSTREAM CR45318 INTERGENIC
3L	16250935	3L_16250935_SNP [dm3] 3L_16257835_SNP [dm6]	T	C	9.594e^-5	0.766	UPSTREAM CG13054 INTERGENIC
3R	25236851	3R_25236851_SNP [dm3] 3R_29411129_SNP [dm6]	C	T	9.606e^-5	0.766	INTRON Ptp99A
3R	13207202	3R_13207202_SNP [dm3] 3R_17381480_SNP [dm6]	T	C	9.617e^-5	0.766	DOWNSTREAM CR43196 INTRON Brf & 1 other
3L	16251109	3L_16251109_SNP [dm3] 3L_16258009_SNP [dm6]	A	T	9.674e^-5	0.766	UPSTREAM CG13054 INTERGENIC
3R	17989301	3R_17989301_SNP [dm3] 3R_22163579_SNP [dm6]	A	T	9.726e^-5	0.766	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	7429272	3L_7429272_SNP [dm3] 3L_7436172_SNP [dm6]	A	C	9.761e^-5	0.766	UPSTREAM Rac2 DOWNSTREAM CG14835 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	5864395	2L_5864395_SNP [dm3] 2L_5864395_SNP [dm6]	C	A	9.771e^-5	0.766	INTRON rau
2L	3547535	2L_3547535_SNP [dm3] 2L_3547535_SNP [dm6]	T	C	9.774e^-5	0.766	UTR_3_PRIME drm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1963904	3L_1963904_SNP [dm3] 3L_1963904_SNP [dm6]	T	C	9.785e^-5	0.766	START_GAINED mv UTR_5_PRIME mv UPSTREAM SCOT INTRON SCOT	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7883724	2R_7883724_SNP [dm3] 2R_11996219_SNP [dm6]	A	C	9.820e^-5	0.766	UPSTREAM CR45319 DOWNSTREAM CR45318 INTERGENIC
3L	13545037	3L_13545037_SNP [dm3] 3L_13551937_SNP [dm6]	G	A	9.871e^-5	0.766	INTRON bru-3
2R	19975246	2R_19975246_SNP [dm3] 2R_24087723_SNP [dm6]	C	T	9.909e^-5	0.766	SPLICE_SITE_REGION snama INTRON snama
3L	13123257	3L_13123257_SNP [dm3] 3L_13130157_SNP [dm6]	G	A	9.922e^-5	0.766	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3577666	2L_3577666_SNP [dm3] 2L_3577666_SNP [dm6]	G	A	1.002e^-4	0.766	DOWNSTREAM sob INTERGENIC
3L	8413813	3L_8413813_SNP [dm3] 3L_8420713_SNP [dm6]	G	T	1.006e^-4	0.766	INTRON CG32354	TF binding site BDTNP1_TFBS_dl
2R	6093863	2R_6093863_SNP [dm3] 2R_10206358_SNP [dm6]	G	A	1.010e^-4	0.766	UTR_3_PRIME Hr46 & 1 other
3L	8413815	3L_8413815_SNP [dm3] 3L_8420715_SNP [dm6]	G	T	1.022e^-4	0.766	INTRON CG32354	TF binding site BDTNP1_TFBS_dl
2L	9489044	2L_9489044_SNP [dm3] 2L_9489044_SNP [dm6]	G	T	1.036e^-4	0.766	INTERGENIC
2L	3737240	2L_3737240_SNP [dm3] 2L_3737240_SNP [dm6]	A	G	1.038e^-4	0.766	INTRON CG10019
3L	12106804	3L_12106804_SNP [dm3] 3L_12113704_SNP [dm6]	G	A	1.042e^-4	0.766	INTERGENIC
3R	22493059	3R_22493059_SNP [dm3] 3R_26667337_SNP [dm6]	T	G	1.043e^-4	0.766	INTRON beat-VII
3L	7548772	3L_7548772_INS [dm3] 3L_7555672_INS [dm6]	A	AA	1.050e^-4	0.766	DOWNSTREAM CG14837 INTERGENIC
2R	6121834	2R_6121834_SNP [dm3] 2R_10234329_SNP [dm6]	T	C	1.050e^-4	0.766	UTR_5_PRIME Hr46 & 1 other INTRON Hr46	TF binding site BDTNP1_TFBS_dl
2L	14561404	2L_14561404_SNP [dm3] 2L_14561404_SNP [dm6]	T	C	1.057e^-4	0.766	DOWNSTREAM CR44855 INTERGENIC	TF binding site mE1_TFBS_cad
3L	16907265	3L_16907265_SNP [dm3] 3L_16914165_SNP [dm6]	T	G	1.063e^-4	0.766	INTRON Lmpt
3L	11670542	3L_11670542_DEL [dm3] 3L_11677442_DEL [dm6]	TATAC	T	1.068e^-4	0.766	INTRON CG32085
3L	11879395	3L_11879395_SNP [dm3] 3L_11886295_SNP [dm6]	T	C	1.073e^-4	0.766	DOWNSTREAM CG5897 INTRON CG44837
2R	7886334	2R_7886334_SNP [dm3] 2R_11998829_SNP [dm6]	C	T	1.076e^-4	0.766	INTERGENIC
2R	6778131	2R_6778131_SNP [dm3] 2R_10890626_SNP [dm6]	C	G	1.076e^-4	0.766	INTRON CG30020
2L	19732240	2L_19732240_SNP [dm3] 2L_19732240_SNP [dm6]	G	A	1.080e^-4	0.766	UTR_3_PRIME CG10462 DOWNSTREAM Lar
X	14752121	X_14752121_SNP [dm3] X_14858088_SNP [dm6]	G	T	1.093e^-4	0.766	INTRON Flo2
2R	18603872	2R_18603872_SNP [dm3] 2R_22716367_SNP [dm6]	T	C	1.095e^-4	0.766	SPLICE_SITE_REGION CG30268 DOWNSTREAM jbug INTRON CG30268	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13908168	2L_13908168_SNP [dm3] 2L_13908168_SNP [dm6]	T	G	1.096e^-4	0.766	SYNONYMOUS_CODING Ance	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4233689	2L_4233689_SNP [dm3] 2L_4233689_SNP [dm6]	G	T	1.098e^-4	0.766	INTERGENIC
2R	9910803	2R_9910803_DEL [dm3] 2R_14023298_DEL [dm6]	CCAAA	C	1.100e^-4	0.766	INTRON mam
2R	7267871	2R_7267871_SNP [dm3] 2R_11380366_SNP [dm6]	A	C	1.107e^-4	0.766	UTR_3_PRIME Sod3 DOWNSTREAM Sod3
X	2328033	X_2328033_SNP [dm3] X_2434000_SNP [dm6]	G	C	1.111e^-4	0.766	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
2R	9911026	2R_9911026_SNP [dm3] 2R_14023521_SNP [dm6]	A	C	1.111e^-4	0.766	INTRON mam	TF binding site BDTNP1_TFBS_dl
3L	4175476	3L_4175476_SNP [dm3] 3L_4175476_SNP [dm6]	T	A	1.118e^-4	0.766	NON_SYNONYMOUS_CODING Teh4 INTRON CG18675
2R	19133176	2R_19133176_SNP [dm3] 2R_23245653_SNP [dm6]	G	C	1.120e^-4	0.766	UPSTREAM yip3 DOWNSTREAM RpL22-like INTERGENIC
3R	17845134	3R_17845134_SNP [dm3] 3R_22019412_SNP [dm6]	A	T	1.121e^-4	0.766	UPSTREAM CG6439 DOWNSTREAM CG6455 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	4559805	X_4559805_SNP [dm3] X_4665772_SNP [dm6]	G	A	1.122e^-4	0.766	INTRON CG3009
3R	14467595	3R_14467595_SNP [dm3] 3R_18641873_SNP [dm6]	T	C	1.123e^-4	0.766	UPSTREAM CG14301 INTRON qin	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	5865468	2L_5865468_SNP [dm3] 2L_5865468_SNP [dm6]	G	T	1.124e^-4	0.766	INTRON rau
3R	10267295	3R_10267295_SNP [dm3] 3R_14441573_SNP [dm6]	G	A	1.126e^-4	0.766	INTRON cv-c
2R	8794982	2R_8794982_SNP [dm3] 2R_12907477_SNP [dm6]	A	T	1.128e^-4	0.766	DOWNSTREAM CR44461 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13330775	2L_13330775_SNP [dm3] 2L_13330775_SNP [dm6]	C	A	1.130e^-4	0.766	INTRON CG43778
3R	17443088	3R_17443088_SNP [dm3] 3R_21617366_SNP [dm6]	G	T	1.136e^-4	0.766	INTRON InR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	15758860	2L_15758860_SNP [dm3] 2L_15758860_SNP [dm6]	T	C	1.145e^-4	0.766	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21734582	2L_21734582_SNP [dm3] 2L_21734582_SNP [dm6]	G	A	1.150e^-4	0.766	INTERGENIC	transposable element FlyBase
2R	5822069	2R_5822069_SNP [dm3] 2R_9934564_SNP [dm6]	C	A	1.154e^-4	0.766	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6661370	3L_6661370_SNP [dm3] 3L_6668270_SNP [dm6]	T	A	1.169e^-4	0.766	UPSTREAM CG32395 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	4005145	3L_4005145_SNP [dm3] 3L_4005145_SNP [dm6]	C	T	1.172e^-4	0.766	UTR_3_PRIME CG14985	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3897279	2L_3897279_SNP [dm3] 2L_3897279_SNP [dm6]	G	A	1.183e^-4	0.766	INTRON capu
2L	5513701	2L_5513701_SNP [dm3] 2L_5513701_SNP [dm6]	G	A	1.183e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2L	4325156	2L_4325156_DEL [dm3] 2L_4325156_DEL [dm6]	GAAATCAAG	G	1.194e^-4	0.766	INTRON CG16857
3R	6591675	3R_6591675_SNP [dm3] 3R_10765953_SNP [dm6]	C	T	1.197e^-4	0.766	UTR_3_PRIME Cap-H2 DOWNSTREAM TfIIFbeta INTRON Cap-H2
2R	6774431	2R_6774431_SNP [dm3] 2R_10886926_SNP [dm6]	C	A	1.199e^-4	0.766	UTR_5_PRIME CG30020 DOWNSTREAM CG18004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
3R	23936277	3R_23936277_SNP [dm3] 3R_28110555_SNP [dm6]	G	A	1.206e^-4	0.766	INTERGENIC
2L	9283449	2L_9283449_SNP [dm3] 2L_9283449_SNP [dm6]	A	G	1.208e^-4	0.766	INTRON Ggamma30A
3L	1963902	3L_1963902_SNP [dm3] 3L_1963902_SNP [dm6]	C	T	1.210e^-4	0.766	UTR_5_PRIME mv UPSTREAM SCOT INTRON SCOT	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20754956	2L_20754956_SNP [dm3] 2L_20754956_SNP [dm6]	A	T	1.212e^-4	0.766	DOWNSTREAM Ns4 INTRON CG9323
2R	8647124	2R_8647124_SNP [dm3] 2R_12759619_SNP [dm6]	G	A	1.220e^-4	0.766	UTR_3_PRIME Dgkepsilon DOWNSTREAM Nacalpha
X	14605238	X_14605238_SNP [dm3] X_14711205_SNP [dm6]	G	A	1.224e^-4	0.766	INTRON NetB
3R	6321211	3R_6321211_SNP [dm3] 3R_10495489_SNP [dm6]	T	C	1.226e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20600483	2L_20600483_SNP [dm3] 2L_20600483_SNP [dm6]	G	C	1.234e^-4	0.766	INTRON CR44909	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16385862	2L_16385862_SNP [dm3] 2L_16385862_SNP [dm6]	C	T	1.235e^-4	0.766	INTERGENIC
2L	4961735	2L_4961735_SNP [dm3] 2L_4961735_SNP [dm6]	T	C	1.244e^-4	0.766	INTRON CG34124	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18984677	3R_18984677_SNP [dm3] 3R_23158955_SNP [dm6]	G	A	1.249e^-4	0.766	SYNONYMOUS_CODING VhaAC39-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	12264318	2R_12264318_SNP [dm3] 2R_16376813_SNP [dm6]	A	G	1.255e^-4	0.766	INTERGENIC
3L	6662974	3L_6662974_SNP [dm3] 3L_6669874_SNP [dm6]	T	C	1.264e^-4	0.766	INTERGENIC
2R	8795004	2R_8795004_DEL [dm3] 2R_12907499_DEL [dm6]	TTA	T	1.269e^-4	0.766	DOWNSTREAM CR44461 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6763151	2R_6763151_SNP [dm3] 2R_10875646_SNP [dm6]	G	T	1.270e^-4	0.766	UPSTREAM nclb & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_Ubx
2L	16430559	2L_16430559_SNP [dm3] 2L_16430559_SNP [dm6]	T	C	1.277e^-4	0.766	INTRON CG5888
2R	11795562	2R_11795562_SNP [dm3] 2R_15908057_SNP [dm6]	T	G	1.278e^-4	0.766	INTRON sli
3L	16302920	3L_16302920_SNP [dm3] 3L_16309820_SNP [dm6]	T	C	1.283e^-4	0.766	EXON CR32160
2R	9914207	2R_9914207_SNP [dm3] 2R_14026702_SNP [dm6]	G	C	1.289e^-4	0.766	INTRON mam	TF binding site BDTNP1_TFBS_dl
2L	20589232	2L_20589232_SNP [dm3] 2L_20589232_SNP [dm6]	G	A	1.292e^-4	0.766	INTRON CR44909
2L	12395190	2L_12395190_SNP [dm3] 2L_12395190_SNP [dm6]	T	G	1.298e^-4	0.766	INTRON bru-2
2R	7890600	2R_7890600_SNP [dm3] 2R_12003095_SNP [dm6]	G	A	1.300e^-4	0.766	SYNONYMOUS_CODING otk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20576044	2L_20576044_SNP [dm3] 2L_20576044_SNP [dm6]	T	C	1.301e^-4	0.766	DOWNSTREAM CR45347 INTERGENIC	transposable element FlyBase
2L	20575875	2L_20575875_SNP [dm3] 2L_20575875_SNP [dm6]	G	A	1.310e^-4	0.766	DOWNSTREAM CR45347 INTERGENIC
3L	3664434	3L_3664434_INS [dm3] 3L_3664434_INS [dm6]	A	AA	1.320e^-4	0.766	INTERGENIC
3R	18184958	3R_18184958_SNP [dm3] 3R_22359236_SNP [dm6]	C	A	1.322e^-4	0.766	INTRON Sar1
2L	7376296	2L_7376296_SNP [dm3] 2L_7376296_SNP [dm6]	G	A	1.323e^-4	0.766	INTRON Wnt10
2R	6914515	2R_6914515_SNP [dm3] 2R_11027010_SNP [dm6]	A	T	1.324e^-4	0.766	INTRON luna
2L	13673042	2L_13673042_SNP [dm3] 2L_13673042_SNP [dm6]	T	G	1.327e^-4	0.766	DOWNSTREAM CG18507 INTERGENIC
3L	16908527	3L_16908527_SNP [dm3] 3L_16915427_SNP [dm6]	G	T	1.340e^-4	0.766	UPSTREAM Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_z
2L	16576824	2L_16576824_SNP [dm3] 2L_16576824_SNP [dm6]	T	A	1.343e^-4	0.766	INTRON CG42389
3R	19759201	3R_19759201_SNP [dm3] 3R_23933479_SNP [dm6]	T	C	1.350e^-4	0.766	SPLICE_SITE_REGION RpS19b UTR_5_PRIME RpS19b UPSTREAM CG5854 DOWNSTREAM CG13599	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	25337700	3R_25337700_SNP [dm3] 3R_29511978_SNP [dm6]	A	G	1.355e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8904217	2R_8904217_SNP [dm3] 2R_13016712_SNP [dm6]	C	G	1.356e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13330661	2L_13330661_SNP [dm3] 2L_13330661_SNP [dm6]	C	A	1.356e^-4	0.766	INTRON CG43778
2L	16520504	2L_16520504_SNP [dm3] 2L_16520504_SNP [dm6]	G	T	1.367e^-4	0.766	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2R	6763150	2R_6763150_SNP [dm3] 2R_10875645_SNP [dm6]	C	T	1.368e^-4	0.766	UPSTREAM nclb & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_Ubx
3L	1963732	3L_1963732_SNP [dm3] 3L_1963732_SNP [dm6]	C	T	1.369e^-4	0.766	UPSTREAM SCOT INTRON mv & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7865345	3L_7865345_DEL [dm3] 3L_7872245_DEL [dm6]	CTGT	C	1.371e^-4	0.766	INTRON CG32365
X	17276858	X_17276858_SNP [dm3] X_17382825_SNP [dm6]	C	G	1.376e^-4	0.766	INTERGENIC
2L	5869363	2L_5869363_SNP [dm3] 2L_5869363_SNP [dm6]	C	G	1.379e^-4	0.766	INTRON rau
3L	5611855	3L_5611855_SNP [dm3] 3L_5618755_SNP [dm6]	A	G	1.381e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	23063406	3L_23063406_SNP [dm3] 3L_23070306_SNP [dm6]	C	T	1.388e^-4	0.766	INTERGENIC	transposable element FlyBase
3L	16266201	3L_16266201_SNP [dm3] 3L_16273101_SNP [dm6]	A	G	1.397e^-4	0.766	INTRON CG13066
3R	23936273	3R_23936273_INS [dm3] 3R_28110551_INS [dm6]	G	GG	1.402e^-4	0.766	INTERGENIC
2R	11604781	2R_11604781_SNP [dm3] 2R_15717276_SNP [dm6]	C	T	1.402e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	5864371	2L_5864371_SNP [dm3] 2L_5864371_SNP [dm6]	T	A	1.411e^-4	0.766	INTRON rau
2R	9790628	2R_9790628_SNP [dm3] 2R_13903123_SNP [dm6]	A	G	1.412e^-4	0.766	SYNONYMOUS_CODING shot	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
X	22239657	X_22239657_SNP [dm3] X_22837821_SNP [dm6]	G	A	1.414e^-4	0.766	INTRON fog & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22766667	3R_22766667_INS [dm3] 3R_26940945_INS [dm6]	T	TTACTTTTAATTGTAT...	1.425e^-4	0.766	INTRON sda
2R	19714171	2R_19714171_SNP [dm3] 2R_23826648_SNP [dm6]	T	A	1.432e^-4	0.766	INTRON CG5549
2L	4229071	2L_4229071_SNP [dm3] 2L_4229071_SNP [dm6]	T	C	1.432e^-4	0.766	DOWNSTREAM RpL40 EXON CR44608
2L	3737258	2L_3737258_SNP [dm3] 2L_3737258_SNP [dm6]	C	T	1.436e^-4	0.766	INTRON CG10019
3L	4175458	3L_4175458_SNP [dm3] 3L_4175458_SNP [dm6]	T	C	1.437e^-4	0.766	SYNONYMOUS_CODING Teh4 INTRON CG18675
3R	14661570	3R_14661570_SNP [dm3] 3R_18835848_SNP [dm6]	G	A	1.439e^-4	0.766	INTRON CG18208
3L	3812100	3L_3812100_SNP [dm3] 3L_3812100_SNP [dm6]	G	A	1.447e^-4	0.766	NON_SYNONYMOUS_CODING CG12006 UPSTREAM CG32263	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9911024	2R_9911024_SNP [dm3] 2R_14023519_SNP [dm6]	A	C	1.461e^-4	0.766	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	13831156	2R_13831156_SNP [dm3] 2R_17943651_SNP [dm6]	C	G	1.466e^-4	0.766	INTERGENIC
3L	12121998	3L_12121998_SNP [dm3] 3L_12128898_SNP [dm6]	G	C	1.466e^-4	0.766	UPSTREAM Lsp2 DOWNSTREAM CG34241 INTERGENIC
2L	6792635	2L_6792635_SNP [dm3] 2L_6792635_SNP [dm6]	A	T	1.469e^-4	0.766	INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	5149705	2L_5149705_SNP [dm3] 2L_5149705_SNP [dm6]	C	T	1.473e^-4	0.766	INTRON Msp300
2L	20584589	2L_20584589_SNP [dm3] 2L_20584589_SNP [dm6]	G	T	1.474e^-4	0.766	INTRON CR44909
3L	6668781	3L_6668781_SNP [dm3] 3L_6675681_SNP [dm6]	C	A	1.474e^-4	0.766	INTERGENIC
3R	18674289	3R_18674289_SNP [dm3] 3R_22848567_SNP [dm6]	T	C	1.478e^-4	0.766	INTERGENIC
3L	7420876	3L_7420876_SNP [dm3] 3L_7427776_SNP [dm6]	A	G	1.483e^-4	0.766	INTRON CG42458
2R	15691048	2R_15691048_SNP [dm3] 2R_19803543_SNP [dm6]	T	C	1.486e^-4	0.766	DOWNSTREAM tRNA:K2:56EF INTERGENIC	TF binding site mE1_TFBS_Kr
2L	13588786	2L_13588786_SNP [dm3] 2L_13588786_SNP [dm6]	C	T	1.487e^-4	0.766	INTRON kuz
2R	5704574	2R_5704574_SNP [dm3] 2R_9817069_SNP [dm6]	G	C	1.487e^-4	0.766	UPSTREAM lectin-46Ca DOWNSTREAM lectin-46Cb INTRON CG1648
2L	11403418	2L_11403418_SNP [dm3] 2L_11403418_SNP [dm6]	T	C	1.488e^-4	0.766	INTERGENIC	regulatory region REDfly_CRMs
2L	5869553	2L_5869553_SNP [dm3] 2L_5869553_SNP [dm6]	C	A	1.491e^-4	0.766	INTRON rau
3R	17785572	3R_17785572_SNP [dm3] 3R_21959850_SNP [dm6]	C	T	1.500e^-4	0.766	INTRON Eip93F	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2R	8519089	2R_8519089_SNP [dm3] 2R_12631584_SNP [dm6]	C	T	1.502e^-4	0.766	SYNONYMOUS_CODING muskelin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	6842125	X_6842125_SNP [dm3] X_6948092_SNP [dm6]	C	G	1.518e^-4	0.766	INTRON CG14431
2R	8010759	2R_8010759_SNP [dm3] 2R_12123254_SNP [dm6]	A	G	1.523e^-4	0.766	INTERGENIC
2L	3644493	2L_3644493_SNP [dm3] 2L_3644493_SNP [dm6]	C	T	1.529e^-4	0.766	INTRON for
2L	7114408	2L_7114408_SNP [dm3] 2L_7114408_SNP [dm6]	T	A	1.536e^-4	0.766	INTRON Pvf3
3L	6301896	3L_6301896_SNP [dm3] 3L_6308796_SNP [dm6]	G	A	1.539e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10752032	2L_10752032_SNP [dm3] 2L_10752032_SNP [dm6]	A	T	1.541e^-4	0.766	INTRON CG17124	TF binding site mE1_TFBS_cad
3L	14565929	3L_14565929_SNP [dm3] 3L_14572829_SNP [dm6]	T	A	1.556e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5692596	3L_5692596_SNP [dm3] 3L_5699496_SNP [dm6]	T	G	1.562e^-4	0.766	INTRON sif	TF binding site mE1_TFBS_chinmo
2L	12286774	2L_12286774_SNP [dm3] 2L_12286774_SNP [dm6]	A	G	1.564e^-4	0.766	UPSTREAM aret INTRON aret
3R	8221735	3R_8221735_SNP [dm3] 3R_12396013_SNP [dm6]	C	T	1.574e^-4	0.766	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
2L	16997294	2L_16997294_SNP [dm3] 2L_16997294_SNP [dm6]	A	G	1.576e^-4	0.766	INTERGENIC
2L	20625117	2L_20625117_SNP [dm3] 2L_20625117_SNP [dm6]	G	T	1.595e^-4	0.766	INTRON CR44909
2L	10472543	2L_10472543_INS [dm3] 2L_10472543_INS [dm6]	G	GTGTATAAAACTTG...	1.605e^-4	0.766	INTRON RluA-1
2R	14150108	2R_14150108_SNP [dm3] 2R_18262603_SNP [dm6]	C	G	1.607e^-4	0.766	INTERGENIC
3R	4441926	3R_4441926_SNP [dm3] 3R_8616204_SNP [dm6]	G	T	1.620e^-4	0.766	INTRON 5-HT2B
2L	21738484	2L_21738484_SNP [dm3] 2L_21738484_SNP [dm6]	C	T	1.622e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_inv
2L	20607300	2L_20607300_SNP [dm3] 2L_20607300_SNP [dm6]	C	T	1.635e^-4	0.766	INTRON CR44909 EXON CR43608
3L	22126622	3L_22126622_SNP [dm3] 3L_22133522_SNP [dm6]	C	T	1.637e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	12655726	X_12655726_SNP [dm3] X_12761693_SNP [dm6]	C	T	1.639e^-4	0.766	NON_SYNONYMOUS_CODING CG12717	TF binding site BDTNP1_TFBS_dl
3R	20727749	3R_20727749_SNP [dm3] 3R_24902027_SNP [dm6]	C	A	1.645e^-4	0.766	SYNONYMOUS_CODING CG10845 INTRON CG13643	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10595865	X_10595865_SNP [dm3] X_10701832_SNP [dm6]	G	A	1.646e^-4	0.766	SYNONYMOUS_CODING X11Lbeta INTRON X11Lbeta
3L	23063582	3L_23063582_SNP [dm3] 3L_23070482_SNP [dm6]	C	T	1.648e^-4	0.766	INTERGENIC	transposable element FlyBase
2L	1636411	2L_1636411_SNP [dm3] 2L_1636411_SNP [dm6]	A	G	1.651e^-4	0.766	INTERGENIC
2L	5149727	2L_5149727_SNP [dm3] 2L_5149727_SNP [dm6]	A	G	1.653e^-4	0.766	INTRON Msp300
2L	15884884	2L_15884884_SNP [dm3] 2L_15884884_SNP [dm6]	G	T	1.659e^-4	0.766	INTERGENIC
2L	3456689	2L_3456689_SNP [dm3] 2L_3456689_SNP [dm6]	A	G	1.661e^-4	0.766	SYNONYMOUS_CODING Cog3 UPSTREAM Sec5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	7904174	3L_7904174_SNP [dm3] 3L_7911074_SNP [dm6]	C	G	1.666e^-4	0.766	INTRON pbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14467762	3R_14467762_SNP [dm3] 3R_18642040_SNP [dm6]	A	C	1.672e^-4	0.766	UPSTREAM CG14301 INTRON qin	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	9973228	2R_9973228_SNP [dm3] 2R_14085723_SNP [dm6]	T	A	1.674e^-4	0.766	INTRON Prosap
3L	13544947	3L_13544947_SNP [dm3] 3L_13551847_SNP [dm6]	G	T	1.676e^-4	0.766	INTRON bru-3
2L	15903481	2L_15903481_SNP [dm3] 2L_15903481_SNP [dm6]	A	T	1.682e^-4	0.766	INTERGENIC
X	6881488	X_6881488_SNP [dm3] X_6987455_SNP [dm6]	T	A	1.683e^-4	0.766	DOWNSTREAM bou INTRON ogre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	20548285	2L_20548285_SNP [dm3] 2L_20548285_SNP [dm6]	A	C	1.684e^-4	0.766	INTERGENIC
3L	3812096	3L_3812096_SNP [dm3] 3L_3812096_SNP [dm6]	T	C	1.695e^-4	0.766	SYNONYMOUS_CODING CG12006 UPSTREAM CG32263	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24426096	3R_24426096_SNP [dm3] 3R_28600374_SNP [dm6]	T	C	1.697e^-4	0.766	UPSTREAM Hrb98DE INTRON Hrb98DE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_HSA
2L	5149724	2L_5149724_SNP [dm3] 2L_5149724_SNP [dm6]	C	T	1.697e^-4	0.766	INTRON Msp300
3R	21926793	3R_21926793_SNP [dm3] 3R_26101071_SNP [dm6]	T	C	1.703e^-4	0.766	INTERGENIC
2L	20603388	2L_20603388_SNP [dm3] 2L_20603388_SNP [dm6]	C	T	1.710e^-4	0.766	DOWNSTREAM CG31677 INTRON CR44909
2L	20574353	2L_20574353_SNP [dm3] 2L_20574353_SNP [dm6]	C	T	1.719e^-4	0.766	INTRON CR45347	TF binding site mE1_TFBS_inv
2L	12286759	2L_12286759_DEL [dm3] 2L_12286759_DEL [dm6]	AATGGC	A	1.720e^-4	0.766	UPSTREAM aret INTRON aret
2L	6618249	2L_6618249_SNP [dm3] 2L_6618249_SNP [dm6]	G	A	1.724e^-4	0.766	SYNONYMOUS_CODING CG11320 UPSTREAM CR44913	TF binding site mE1_TFBS_cad
X	20489924	X_20489924_SNP [dm3] X_20618897_SNP [dm6]	G	A	1.728e^-4	0.766	INTRON RunxA
2R	8009134	2R_8009134_SNP [dm3] 2R_12121629_SNP [dm6]	G	A	1.733e^-4	0.766	INTERGENIC
3R	23198555	3R_23198555_SNP [dm3] 3R_27372833_SNP [dm6]	C	A	1.737e^-4	0.766	DOWNSTREAM CG42534 INTERGENIC
2R	15019852	2R_15019852_SNP [dm3] 2R_19132347_SNP [dm6]	T	C	1.748e^-4	0.766	SYNONYMOUS_CODING botv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24417113	3R_24417113_SNP [dm3] 3R_28591391_SNP [dm6]	G	T	1.749e^-4	0.766	DOWNSTREAM MRE23 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_cnc
3R	22123768	3R_22123768_SNP [dm3] 3R_26298046_SNP [dm6]	A	G	1.754e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14712654	2R_14712654_SNP [dm3] 2R_18825149_SNP [dm6]	G	T	1.757e^-4	0.766	INTRON CG15097	TF binding site mE1_TFBS_chinmo
2L	9981354	2L_9981354_INS [dm3] 2L_9981354_INS [dm6]	G	CGGTT	1.758e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	14940077	3L_14940077_DEL [dm3] 3L_14946977_DEL [dm6]	TCAT	T	1.759e^-4	0.766	UPSTREAM BobA INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	11791339	2R_11791339_SNP [dm3] 2R_15903834_SNP [dm6]	G	A	1.760e^-4	0.766	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	16268365	3L_16268365_SNP [dm3] 3L_16275265_SNP [dm6]	C	T	1.762e^-4	0.766	INTERGENIC
2R	6751750	2R_6751750_SNP [dm3] 2R_10864245_SNP [dm6]	T	G	1.766e^-4	0.766	INTRON CG30015
X	16548652	X_16548652_SNP [dm3] X_16654619_SNP [dm6]	A	G	1.766e^-4	0.766	SYNONYMOUS_CODING CG9723 UPSTREAM r	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_sens
X	14268333	X_14268333_SNP [dm3] X_14374300_SNP [dm6]	G	A	1.768e^-4	0.766	INTRON dpr8
2L	6574468	2L_6574468_SNP [dm3] 2L_6574468_SNP [dm6]	G	A	1.768e^-4	0.766	SYNONYMOUS_CODING CG11319	TF binding site mE1_TFBS_cad
2L	19695806	2L_19695806_SNP [dm3] 2L_19695806_SNP [dm6]	C	G	1.772e^-4	0.766	INTRON Lar
2L	19696484	2L_19696484_DEL [dm3] 2L_19696484_DEL [dm6]	AGC	A	1.772e^-4	0.766	INTRON Lar
3R	25356405	3R_25356405_SNP [dm3] 3R_29530683_SNP [dm6]	T	C	1.773e^-4	0.766	INTERGENIC
X	5620422	X_5620422_SNP [dm3] X_5726389_SNP [dm6]	A	G	1.775e^-4	0.766	INTRON CG32758
3R	24437627	3R_24437627_SNP [dm3] 3R_28611905_SNP [dm6]	A	G	1.775e^-4	0.766	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9786675	2R_9786675_SNP [dm3] 2R_13899170_SNP [dm6]	G	A	1.775e^-4	0.766	INTRON shot	TF binding site mE1_TFBS_cad
2R	11857232	2R_11857232_SNP [dm3] 2R_15969727_SNP [dm6]	G	A	1.782e^-4	0.766	NON_SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_HSA
3L	9526296	3L_9526296_SNP [dm3] 3L_9533196_SNP [dm6]	G	A	1.789e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8417608	2L_8417608_SNP [dm3] 2L_8417608_SNP [dm6]	T	C	1.792e^-4	0.766	INTRON Akap200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	16250916	3L_16250916_SNP [dm3] 3L_16257816_SNP [dm6]	T	C	1.796e^-4	0.766	UPSTREAM CG13054 INTERGENIC
2R	6774153	2R_6774153_SNP [dm3] 2R_10886648_SNP [dm6]	C	A	1.799e^-4	0.766	UPSTREAM CG30020 DOWNSTREAM CG18004 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sbb
X	12738561	X_12738561_DEL [dm3] X_12844528_DEL [dm6]	AC	A	1.799e^-4	0.766	INTRON Pde9
3R	18744744	3R_18744744_SNP [dm3] 3R_22919022_SNP [dm6]	C	G	1.802e^-4	0.766	INTRON klg
2L	20342646	2L_20342646_SNP [dm3] 2L_20342646_SNP [dm6]	C	T	1.809e^-4	0.766	INTRON spir	TF binding site mE1_TFBS_cad
2R	19975260	2R_19975260_SNP [dm3] 2R_24087737_SNP [dm6]	A	G	1.812e^-4	0.766	INTRON snama
3L	16270103	3L_16270103_SNP [dm3] 3L_16277003_SNP [dm6]	C	A	1.815e^-4	0.766	UPSTREAM CG13065 INTERGENIC
2R	7892561	2R_7892561_SNP [dm3] 2R_12005056_SNP [dm6]	G	A	1.816e^-4	0.766	INTRON otk
2R	8941475	2R_8941475_SNP [dm3] 2R_13053970_SNP [dm6]	T	C	1.818e^-4	0.766	INTERGENIC
2R	17158674	2R_17158674_SNP [dm3] 2R_21271169_SNP [dm6]	C	T	1.818e^-4	0.766	INTRON Rgk3
X	20152219	X_20152219_SNP [dm3] X_20281192_SNP [dm6]	A	T	1.826e^-4	0.766	INTERGENIC
X	5758498	X_5758498_SNP [dm3] X_5864465_SNP [dm6]	A	T	1.828e^-4	0.766	DOWNSTREAM CG43137 INTERGENIC
2R	8010725	2R_8010725_SNP [dm3] 2R_12123220_SNP [dm6]	A	G	1.829e^-4	0.766	INTERGENIC
2R	14712592	2R_14712592_SNP [dm3] 2R_18825087_SNP [dm6]	C	T	1.836e^-4	0.766	INTRON CG15097	TF binding site mE1_TFBS_chinmo
3L	6669901	3L_6669901_SNP [dm3] 3L_6676801_SNP [dm6]	G	C	1.836e^-4	0.766	INTERGENIC
2R	6914511	2R_6914511_SNP [dm3] 2R_11027006_SNP [dm6]	G	T	1.840e^-4	0.766	INTRON luna
2L	5858489	2L_5858489_SNP [dm3] 2L_5858489_SNP [dm6]	A	G	1.841e^-4	0.766	INTERGENIC
2R	6376969	2R_6376969_SNP [dm3] 2R_10489464_SNP [dm6]	A	G	1.843e^-4	0.766	DOWNSTREAM lola INTRON lola	TF binding site mE1_TFBS_sens
2R	6540322	2R_6540322_SNP [dm3] 2R_10652817_SNP [dm6]	A	C	1.845e^-4	0.766	INTERGENIC
X	12114085	X_12114085_DEL [dm3] X_12220052_DEL [dm6]	TATCTGT	T	1.848e^-4	0.766	INTRON Ten-a
2L	12264605	2L_12264605_SNP [dm3] 2L_12264605_SNP [dm6]	G	A	1.860e^-4	0.766	INTRON aret
X	15656146	X_15656146_SNP [dm3] X_15762113_SNP [dm6]	C	T	1.861e^-4	0.766	SYNONYMOUS_CODING mRpL3 UPSTREAM CG17209	TF binding site mE1_TFBS_sens
3R	17690882	3R_17690882_SNP [dm3] 3R_21865160_SNP [dm6]	A	T	1.866e^-4	0.766	UPSTREAM lsn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16441943	2R_16441943_SNP [dm3] 2R_20554438_SNP [dm6]	C	T	1.885e^-4	0.766	INTERGENIC
3L	7232235	3L_7232235_SNP [dm3] 3L_7239135_SNP [dm6]	C	A	1.890e^-4	0.766	SYNONYMOUS_CODING BHD	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	10268458	3R_10268458_SNP [dm3] 3R_14442736_SNP [dm6]	T	C	1.894e^-4	0.766	INTRON cv-c
2L	20817331	2L_20817331_SNP [dm3] 2L_20817331_SNP [dm6]	A	G	1.907e^-4	0.766	UPSTREAM CheB38b DOWNSTREAM CheB38a INTERGENIC
2R	12191912	2R_12191912_SNP [dm3] 2R_16304407_SNP [dm6]	C	A	1.915e^-4	0.766	EXON CR45232
3L	3757048	3L_3757048_SNP [dm3] 3L_3757048_SNP [dm6]	G	A	1.918e^-4	0.766	INTRON CG32264	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	19975265	2R_19975265_INS [dm3] 2R_24087742_INS [dm6]	T	TA	1.920e^-4	0.766	INTRON snama
2L	4164627	2L_4164627_SNP [dm3] 2L_4164627_SNP [dm6]	T	A	1.920e^-4	0.766	DOWNSTREAM Or24a INTERGENIC
2L	2327081	2L_2327081_SNP [dm3] 2L_2327081_SNP [dm6]	G	C	1.924e^-4	0.766	INTRON CG9967 & 1 other	TF binding site mE1_TFBS_chinmo
3L	871163	3L_871163_SNP [dm3] 3L_871163_SNP [dm6]	C	T	1.928e^-4	0.766	UTR_3_PRIME CG12502 UPSTREAM CG32479 DOWNSTREAM CG12502	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	6103599	X_6103599_SNP [dm3] X_6209566_SNP [dm6]	T	C	1.928e^-4	0.766	INTERGENIC
2R	8794978	2R_8794978_SNP [dm3] 2R_12907473_SNP [dm6]	C	T	1.931e^-4	0.766	DOWNSTREAM CR44461 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20584590	2L_20584590_SNP [dm3] 2L_20584590_SNP [dm6]	G	T	1.931e^-4	0.766	INTRON CR44909
3R	10308503	3R_10308503_SNP [dm3] 3R_14482781_SNP [dm6]	A	T	1.939e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	17895930	X_17895930_DEL [dm3] X_18001897_DEL [dm6]	AAAATGGA	A	1.943e^-4	0.766	INTRON Sh
X	14128426	X_14128426_SNP [dm3] X_14234393_SNP [dm6]	G	A	1.957e^-4	0.766	UPSTREAM CG42271 DOWNSTREAM Fbxl4 INTERGENIC
3R	14467696	3R_14467696_SNP [dm3] 3R_18641974_SNP [dm6]	A	G	1.964e^-4	0.766	UPSTREAM CG14301 INTRON qin	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	3007206	2R_3007206_SNP [dm3] 2R_7119701_SNP [dm6]	C	A	1.966e^-4	0.766	INTRON esn
2L	3547814	2L_3547814_SNP [dm3] 2L_3547814_SNP [dm6]	G	A	1.971e^-4	0.766	UTR_3_PRIME drm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	8184791	X_8184791_SNP [dm3] X_8290758_SNP [dm6]	T	G	1.973e^-4	0.766	INTRON nAChRalpha3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5865076	2L_5865076_SNP [dm3] 2L_5865076_SNP [dm6]	A	G	1.974e^-4	0.766	INTRON rau	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10841152	X_10841152_SNP [dm3] X_10947119_SNP [dm6]	T	C	1.976e^-4	0.766	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2R	2989583	2R_2989583_SNP [dm3] 2R_7102078_SNP [dm6]	C	T	1.988e^-4	0.766	INTRON esn
2L	15998581	2L_15998581_SNP [dm3] 2L_15998581_SNP [dm6]	G	A	1.989e^-4	0.766	INTERGENIC
2R	7141415	2R_7141415_SNP [dm3] 2R_11253910_SNP [dm6]	A	G	1.994e^-4	0.766	UPSTREAM Cpr47Ea INTERGENIC
X	4559741	X_4559741_SNP [dm3] X_4665708_SNP [dm6]	G	T	2.000e^-4	0.766	INTRON CG3009
2R	7811962	2R_7811962_SNP [dm3] 2R_11924457_SNP [dm6]	C	T	2.001e^-4	0.766	INTERGENIC
3R	14500816	3R_14500816_SNP [dm3] 3R_18675094_SNP [dm6]	T	A	2.003e^-4	0.766	UTR_3_PRIME CG7705 DOWNSTREAM CG7702	TF binding site mE1_TFBS_cad
2L	1486901	2L_1486901_SNP [dm3] 2L_1486901_SNP [dm6]	T	C	2.003e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6876946	2R_6876946_SNP [dm3] 2R_10989441_SNP [dm6]	G	T	2.009e^-4	0.766	INTRON luna	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	6876947	2R_6876947_SNP [dm3] 2R_10989442_SNP [dm6]	C	G	2.009e^-4	0.766	INTRON luna	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	8195043	X_8195043_SNP [dm3] X_8301010_SNP [dm6]	A	C	2.012e^-4	0.766	INTRON nAChRalpha3
2L	3525076	2L_3525076_SNP [dm3] 2L_3525076_SNP [dm6]	G	A	2.020e^-4	0.766	UPSTREAM CG8852 INTERGENIC
3L	871164	3L_871164_SNP [dm3] 3L_871164_SNP [dm6]	A	T	2.023e^-4	0.766	UTR_3_PRIME CG12502 UPSTREAM CG32479 DOWNSTREAM CG12502	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	16957497	2R_16957497_DEL [dm3] 2R_21069992_DEL [dm6]	TA	T	2.024e^-4	0.766	UPSTREAM Cht9 & 1 other DOWNSTREAM CG10527 & 1 other INTERGENIC
2R	16438773	2R_16438773_SNP [dm3] 2R_20551268_SNP [dm6]	G	A	2.024e^-4	0.766	SYNONYMOUS_CODING CG13430 UTR_3_PRIME CG18065	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3R	24445885	3R_24445885_SNP [dm3] 3R_28620163_SNP [dm6]	G	A	2.033e^-4	0.766	INTRON CG10011
2L	14570653	2L_14570653_SNP [dm3] 2L_14570653_SNP [dm6]	A	T	2.034e^-4	0.766	INTERGENIC
2L	13822091	2L_13822091_SNP [dm3] 2L_13822091_SNP [dm6]	G	A	2.034e^-4	0.766	SYNONYMOUS_CODING b	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8312573	3L_8312573_SNP [dm3] 3L_8319473_SNP [dm6]	T	G	2.060e^-4	0.766	UPSTREAM CG43059 INTERGENIC
3R	15642930	3R_15642930_SNP [dm3] 3R_19817208_SNP [dm6]	G	A	2.071e^-4	0.766	INTRON bnl	TF binding site BDTNP1_TFBS_twi
X	20152220	X_20152220_SNP [dm3] X_20281193_SNP [dm6]	C	T	2.072e^-4	0.766	INTERGENIC
2R	9914191	2R_9914191_SNP [dm3] 2R_14026686_SNP [dm6]	G	T	2.073e^-4	0.766	INTRON mam	TF binding site BDTNP1_TFBS_dl
2L	16256588	2L_16256588_SNP [dm3] 2L_16256588_SNP [dm6]	C	T	2.077e^-4	0.766	UPSTREAM PRL-1 INTRON PRL-1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
3L	873758	3L_873758_SNP [dm3] 3L_873758_SNP [dm6]	T	C	2.090e^-4	0.766	SYNONYMOUS_CODING CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24417129	3R_24417129_SNP [dm3] 3R_28591407_SNP [dm6]	A	G	2.090e^-4	0.766	DOWNSTREAM MRE23 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2L	13924188	2L_13924188_SNP [dm3] 2L_13924188_SNP [dm6]	C	A	2.090e^-4	0.766	UPSTREAM CG16886 INTRON Ance-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5780533	3R_5780533_SNP [dm3] 3R_9954811_SNP [dm6]	A	G	2.094e^-4	0.766	UTR_3_PRIME Glut4EF INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14601324	2R_14601324_DEL [dm3] 2R_18713819_DEL [dm6]	CA	C	2.098e^-4	0.766	INTERGENIC
3L	16270127	3L_16270127_SNP [dm3] 3L_16277027_SNP [dm6]	A	C	2.103e^-4	0.766	UPSTREAM CG13065 INTERGENIC
2R	19473070	2R_19473070_SNP [dm3] 2R_23585547_SNP [dm6]	T	C	2.109e^-4	0.766	INTRON apt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3684469	2L_3684469_SNP [dm3] 2L_3684469_SNP [dm6]	T	C	2.112e^-4	0.766	SYNONYMOUS_CODING CG34340	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2302729	X_2302729_SNP [dm3] X_2408696_SNP [dm6]	C	A	2.116e^-4	0.766	DOWNSTREAM CG12496 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	14573482	2L_14573482_SNP [dm3] 2L_14573482_SNP [dm6]	A	C	2.116e^-4	0.766	INTERGENIC
3L	3756971	3L_3756971_SNP [dm3] 3L_3756971_SNP [dm6]	C	T	2.119e^-4	0.766	INTRON CG32264	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	11911983	X_11911983_SNP [dm3] X_12017950_SNP [dm6]	T	C	2.119e^-4	0.766	UTR_5_PRIME Chrac-16 UPSTREAM CG15735 DOWNSTREAM regucalcin	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7574113	2R_7574113_SNP [dm3] 2R_11686608_SNP [dm6]	A	T	2.119e^-4	0.766	UPSTREAM CG13196 INTRON Buffy	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	20595155	2L_20595155_DEL [dm3] 2L_20595155_DEL [dm6]	GG	G	2.128e^-4	0.766	INTRON CR44909
X	19232463	X_19232463_SNP [dm3] X_19338430_SNP [dm6]	T	A	2.130e^-4	0.766	INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_dl
3R	22123886	3R_22123886_SNP [dm3] 3R_26298164_SNP [dm6]	C	A	2.131e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_cad
X	10794310	X_10794310_INS [dm3] X_10900277_INS [dm6]	T	TT	2.131e^-4	0.766	UTR_5_PRIME CG15208 UPSTREAM CG1582 & 1 other
3L	7413955	3L_7413955_SNP [dm3] 3L_7420855_SNP [dm6]	A	T	2.134e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_run
3R	14723407	3R_14723407_SNP [dm3] 3R_18897685_SNP [dm6]	T	A	2.137e^-4	0.766	UPSTREAM CG14297 INTERGENIC
2R	8202531	2R_8202531_SNP [dm3] 2R_12315026_SNP [dm6]	C	A	2.150e^-4	0.766	SPLICE_SITE_REGION CG30046 INTRON CG30046
3R	15784916	3R_15784916_SNP [dm3] 3R_19959194_SNP [dm6]	T	C	2.155e^-4	0.766	INTRON Hs6st
2R	9910707	2R_9910707_SNP [dm3] 2R_14023202_SNP [dm6]	G	T	2.157e^-4	0.766	INTRON mam
2R	15839481	2R_15839481_SNP [dm3] 2R_19951976_SNP [dm6]	C	G	2.157e^-4	0.766	DOWNSTREAM CG10822 INTERGENIC
X	7916354	X_7916354_DEL [dm3] X_8022321_DEL [dm6]	TTAATCGGTAATATGTCAT...	T	2.158e^-4	0.766	UPSTREAM CG15333 INTRON Tbh	TF binding site mE1_TFBS_inv
2L	7875081	2L_7875081_SNP [dm3] 2L_7875081_SNP [dm6]	C	A	2.158e^-4	0.766	INTRON spz3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13249233	3L_13249233_SNP [dm3] 3L_13256133_SNP [dm6]	A	G	2.166e^-4	0.766	INTRON caps
2L	16576869	2L_16576869_SNP [dm3] 2L_16576869_SNP [dm6]	A	T	2.166e^-4	0.766	INTRON CG42389
2R	9319458	2R_9319458_SNP [dm3] 2R_13431953_SNP [dm6]	T	A	2.169e^-4	0.766	UPSTREAM tRNA:I:49Fe & 1 other DOWNSTREAM tRNA:I:49Fb & 2 others INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	12405090	2L_12405090_DEL [dm3] 2L_12405090_DEL [dm6]	AA	A	2.170e^-4	0.766	UPSTREAM vir-1 INTRON vir-1
3L	6666058	3L_6666058_SNP [dm3] 3L_6672958_SNP [dm6]	A	C	2.172e^-4	0.766	INTERGENIC	regulatory region REDfly_CRMs
3L	22107435	3L_22107435_SNP [dm3] 3L_22114335_SNP [dm6]	T	A	2.174e^-4	0.766	INTERGENIC
2R	7884659	2R_7884659_SNP [dm3] 2R_11997154_SNP [dm6]	T	G	2.182e^-4	0.766	DOWNSTREAM CR45318 INTERGENIC
2R	7574108	2R_7574108_SNP [dm3] 2R_11686603_SNP [dm6]	T	C	2.191e^-4	0.766	UPSTREAM CG13196 INTRON Buffy	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	2778722	3L_2778722_SNP [dm3] 3L_2778722_SNP [dm6]	T	C	2.192e^-4	0.766	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2418318	3L_2418318_SNP [dm3] 3L_2418318_SNP [dm6]	G	T	2.193e^-4	0.766	UTR_5_PRIME CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7783042	X_7783042_SNP [dm3] X_7889009_SNP [dm6]	A	G	2.193e^-4	0.766	UPSTREAM CG10932 DOWNSTREAM Nek2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6914507	2R_6914507_SNP [dm3] 2R_11027002_SNP [dm6]	T	G	2.194e^-4	0.766	INTRON luna
3R	17785789	3R_17785789_SNP [dm3] 3R_21960067_SNP [dm6]	T	A	2.200e^-4	0.766	INTRON Eip93F	TF binding site mE1_TFBS_ftz_f1
3L	6637055	3L_6637055_SNP [dm3] 3L_6643955_SNP [dm6]	G	A	2.204e^-4	0.766	INTERGENIC
3L	5076484	3L_5076484_SNP [dm3] 3L_5076484_SNP [dm6]	A	G	2.208e^-4	0.766	INTRON Con
2L	1930713	2L_1930713_SNP [dm3] 2L_1930713_SNP [dm6]	T	C	2.209e^-4	0.766	INTRON CG7337
3R	25448137	3R_25448137_SNP [dm3] 3R_29622415_SNP [dm6]	A	G	2.211e^-4	0.766	INTERGENIC
2L	9268588	2L_9268588_SNP [dm3] 2L_9268588_SNP [dm6]	A	G	2.217e^-4	0.766	INTRON Ggamma30A
3L	16907293	3L_16907293_SNP [dm3] 3L_16914193_SNP [dm6]	T	G	2.219e^-4	0.766	INTRON Lmpt
2R	17654101	2R_17654101_SNP [dm3] 2R_21766596_SNP [dm6]	A	T	2.220e^-4	0.766	INTRON CG30395
2R	13046001	2R_13046001_SNP [dm3] 2R_17158496_SNP [dm6]	G	A	2.222e^-4	0.766	SYNONYMOUS_CODING CG30458 UPSTREAM CG17287
3L	16949950	3L_16949950_SNP [dm3] 3L_16956850_SNP [dm6]	A	T	2.244e^-4	0.766	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl
3R	26039135	3R_26039135_SNP [dm3] 3R_30213413_SNP [dm6]	C	T	2.257e^-4	0.766	UTR_3_PRIME CecB DOWNSTREAM CecA2 & 1 other
X	12897930	X_12897930_SNP [dm3] X_13003897_SNP [dm6]	G	A	2.259e^-4	0.766	DOWNSTREAM CG15719 INTRON rad
2R	7890616	2R_7890616_SNP [dm3] 2R_12003111_SNP [dm6]	G	A	2.264e^-4	0.766	SYNONYMOUS_CODING otk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8570038	3L_8570038_SNP [dm3] 3L_8576938_SNP [dm6]	G	A	2.268e^-4	0.766	UTR_5_PRIME CG43078 UPSTREAM CG6638
2L	20047723	2L_20047723_SNP [dm3] 2L_20047723_SNP [dm6]	G	C	2.270e^-4	0.766	INTRON sNPF
3R	19449581	3R_19449581_SNP [dm3] 3R_23623859_SNP [dm6]	C	T	2.297e^-4	0.766	INTRON CG31145
2L	5864462	2L_5864462_SNP [dm3] 2L_5864462_SNP [dm6]	G	A	2.300e^-4	0.766	INTRON rau
2R	7890468	2R_7890468_SNP [dm3] 2R_12002963_SNP [dm6]	G	C	2.303e^-4	0.766	NON_SYNONYMOUS_CODING otk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22766677	3R_22766677_SNP [dm3] 3R_26940955_SNP [dm6]	T	G	2.305e^-4	0.766	INTRON sda
3R	19008237	3R_19008237_SNP [dm3] 3R_23182515_SNP [dm6]	C	A	2.316e^-4	0.766	UPSTREAM Irk1 INTRON Irk1
2L	14256773	2L_14256773_SNP [dm3] 2L_14256773_SNP [dm6]	C	A	2.322e^-4	0.766	INTERGENIC
2L	5662718	2L_5662718_SNP [dm3] 2L_5662718_SNP [dm6]	T	A	2.323e^-4	0.766	UPSTREAM Hsp60C & 1 other INTERGENIC
2L	1930600	2L_1930600_SNP [dm3] 2L_1930600_SNP [dm6]	C	T	2.339e^-4	0.766	INTRON CG7337
X	3135385	X_3135385_SNP [dm3] X_3241352_SNP [dm6]	T	G	2.345e^-4	0.766	UPSTREAM ng2 DOWNSTREAM ng3 INTRON dnc
2L	10719527	2L_10719527_SNP [dm3] 2L_10719527_SNP [dm6]	G	T	2.347e^-4	0.766	INTERGENIC
3R	22766676	3R_22766676_SNP [dm3] 3R_26940954_SNP [dm6]	T	A	2.348e^-4	0.766	INTRON sda
3R	22766679	3R_22766679_MNP [dm3] 3R_26940957_MNP [dm6]	TTA	GAT	2.348e^-4	0.766	INTRON sda
3R	22766695	3R_22766695_SNP [dm3] 3R_26940973_SNP [dm6]	A	T	2.348e^-4	0.766	INTRON sda
2L	8359037	2L_8359037_SNP [dm3] 2L_8359037_SNP [dm6]	T	G	2.349e^-4	0.766	SYNONYMOUS_CODING CG7627	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7366889	2L_7366889_SNP [dm3] 2L_7366889_SNP [dm6]	G	T	2.351e^-4	0.766	INTRON Wnt10	TF binding site mE1_TFBS_cad
2R	8631559	2R_8631559_SNP [dm3] 2R_12744054_SNP [dm6]	G	A	2.352e^-4	0.766	INTRON CG42663	TF binding site mE1_TFBS_Trl
3L	8382713	3L_8382713_SNP [dm3] 3L_8389613_SNP [dm6]	C	T	2.353e^-4	0.766	INTRON ImpE1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11484303	2L_11484303_SNP [dm3] 2L_11484303_SNP [dm6]	G	A	2.356e^-4	0.766	UPSTREAM CG43355 & 1 other INTERGENIC
3L	15119297	3L_15119297_SNP [dm3] 3L_15126197_SNP [dm6]	C	T	2.357e^-4	0.766	UPSTREAM CG16959 INTRON Cep135	TF binding site BDTNP1_TFBS_Med
3L	4168311	3L_4168311_SNP [dm3] 3L_4168311_SNP [dm6]	G	T	2.358e^-4	0.766	UPSTREAM mas EXON CR44529	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	2782784	3L_2782784_SNP [dm3] 3L_2782784_SNP [dm6]	C	G	2.363e^-4	0.766	UTR_5_PRIME pgant6 DOWNSTREAM mRpS35	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7820373	2R_7820373_SNP [dm3] 2R_11932868_SNP [dm6]	A	C	2.370e^-4	0.766	INTERGENIC
3L	11636462	3L_11636462_SNP [dm3] 3L_11643362_SNP [dm6]	T	A	2.378e^-4	0.766	SYNONYMOUS_CODING CG6071 DOWNSTREAM CG32091
3R	26108482	3R_26108482_SNP [dm3] 3R_30282760_SNP [dm6]	C	G	2.378e^-4	0.766	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8009582	2R_8009582_SNP [dm3] 2R_12122077_SNP [dm6]	G	A	2.381e^-4	0.766	INTERGENIC
3R	22886669	3R_22886669_SNP [dm3] 3R_27060947_SNP [dm6]	G	A	2.384e^-4	0.766	SYNONYMOUS_CODING Nep5
2R	6888857	2R_6888857_SNP [dm3] 2R_11001352_SNP [dm6]	C	T	2.384e^-4	0.766	INTRON luna
X	7783832	X_7783832_SNP [dm3] X_7889799_SNP [dm6]	T	A	2.385e^-4	0.766	NON_SYNONYMOUS_CODING Nek2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3L	8382707	3L_8382707_SNP [dm3] 3L_8389607_SNP [dm6]	G	A	2.386e^-4	0.766	INTRON ImpE1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19895704	2R_19895704_SNP [dm3] 2R_24008181_SNP [dm6]	T	A	2.387e^-4	0.766	INTRON Unc-89	TF binding site mE1_TFBS_cad
2R	19158705	2R_19158705_SNP [dm3] 2R_23271182_SNP [dm6]	G	C	2.393e^-4	0.766	DOWNSTREAM ord & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	5825072	3R_5825072_SNP [dm3] 3R_9999350_SNP [dm6]	G	A	2.395e^-4	0.766	SYNONYMOUS_CODING Spn85F DOWNSTREAM CG5359	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14503591	2L_14503591_SNP [dm3] 2L_14503591_SNP [dm6]	A	C	2.398e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_cad
X	12381002	X_12381002_SNP [dm3] X_12486969_SNP [dm6]	T	C	2.405e^-4	0.766	UPSTREAM Cpr11A INTERGENIC
3R	8214988	3R_8214988_INS [dm3] 3R_12389266_INS [dm6]	A	AA	2.409e^-4	0.766	DOWNSTREAM CG33098 INTRON CG34402
2R	19710794	2R_19710794_SNP [dm3] 2R_23823271_SNP [dm6]	T	A	2.413e^-4	0.766	DOWNSTREAM CG4763 INTRON CG5549	TF binding site mE1_TFBS_chinmo
X	1613945	X_1613945_SNP [dm3] X_1719912_SNP [dm6]	A	T	2.414e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	27212714	3R_27212714_SNP [dm3] 3R_31386992_SNP [dm6]	C	G	2.414e^-4	0.766	INTRON CG1607	TF binding site mE1_TFBS_cad
2R	12343542	2R_12343542_SNP [dm3] 2R_16456037_SNP [dm6]	T	C	2.416e^-4	0.766	INTERGENIC
3L	8460825	3L_8460825_SNP [dm3] 3L_8467725_SNP [dm6]	C	T	2.417e^-4	0.766	SYNONYMOUS_CODING Gug	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14467759	3R_14467759_INS [dm3] 3R_18642037_INS [dm6]	A	AA	2.418e^-4	0.766	UPSTREAM CG14301 INTRON qin	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	6102910	2R_6102910_SNP [dm3] 2R_10215405_SNP [dm6]	G	A	2.419e^-4	0.766	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl
X	19528801	X_19528801_SNP [dm3] X_19634768_SNP [dm6]	G	C	2.423e^-4	0.766	NON_SYNONYMOUS_CODING e_y_3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16877974	X_16877974_INS [dm3] X_16983941_INS [dm6]	A	AA	2.427e^-4	0.766	INTRON CG45002
2R	6915586	2R_6915586_SNP [dm3] 2R_11028081_SNP [dm6]	G	T	2.433e^-4	0.766	INTRON luna
3R	22766696	3R_22766696_SNP [dm3] 3R_26940974_SNP [dm6]	G	A	2.434e^-4	0.766	INTRON sda
2L	9283875	2L_9283875_SNP [dm3] 2L_9283875_SNP [dm6]	C	T	2.439e^-4	0.766	INTRON Ggamma30A
2L	13924202	2L_13924202_SNP [dm3] 2L_13924202_SNP [dm6]	T	A	2.439e^-4	0.766	UPSTREAM CG16886 INTRON Ance-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24445804	3R_24445804_SNP [dm3] 3R_28620082_SNP [dm6]	C	T	2.442e^-4	0.766	INTRON CG10011
X	20465019	X_20465019_SNP [dm3] X_20593992_SNP [dm6]	A	T	2.443e^-4	0.766	INTRON RunxA
3L	9149336	3L_9149336_SNP [dm3] 3L_9156236_SNP [dm6]	C	T	2.459e^-4	0.766	INTRON Rdl
2L	5868327	2L_5868327_SNP [dm3] 2L_5868327_SNP [dm6]	C	T	2.460e^-4	0.766	INTRON rau	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	5862491	2L_5862491_SNP [dm3] 2L_5862491_SNP [dm6]	C	T	2.463e^-4	0.766	INTRON rau
2R	11588565	2R_11588565_SNP [dm3] 2R_15701060_SNP [dm6]	T	G	2.471e^-4	0.766	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080 INTRON CG30080 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3302330	2R_3302330_SNP [dm3] 2R_7414825_SNP [dm6]	C	A	2.481e^-4	0.766	INTERGENIC
3R	27209984	3R_27209984_SNP [dm3] 3R_31384262_SNP [dm6]	A	G	2.482e^-4	0.766	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2419334	3L_2419334_SNP [dm3] 3L_2419334_SNP [dm6]	T	A	2.489e^-4	0.766	INTRON CG45186
2R	18192667	2R_18192667_SNP [dm3] 2R_22305162_SNP [dm6]	A	C	2.489e^-4	0.766	INTRON wdp
2R	14292486	2R_14292486_SNP [dm3] 2R_18404981_SNP [dm6]	C	T	2.491e^-4	0.766	SYNONYMOUS_CODING GstE5 DOWNSTREAM GstE4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5869615	2L_5869615_DEL [dm3] 2L_5869615_DEL [dm6]	CGGTTTTATGGCATG...	C	2.491e^-4	0.766	INTRON rau	TF binding site BDTNP1_TFBS_twi
3L	15728578	3L_15728578_SNP [dm3] 3L_15735478_SNP [dm6]	A	T	2.494e^-4	0.766	INTERGENIC
3R	27250858	3R_27250858_DEL [dm3] 3R_31425136_DEL [dm6]	CAGCTTC	C	2.498e^-4	0.766	INTRON Gprk2
2R	6917977	2R_6917977_SNP [dm3] 2R_11030472_SNP [dm6]	C	T	2.499e^-4	0.766	INTRON luna
3R	26394591	3R_26394591_SNP [dm3] 3R_30568869_SNP [dm6]	G	T	2.501e^-4	0.766	INTRON tmod	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6763152	2R_6763152_INS [dm3] 2R_10875647_INS [dm6]	T	TAAATA	2.515e^-4	0.766	UPSTREAM nclb & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_Ubx
2R	7882979	2R_7882979_SNP [dm3] 2R_11995474_SNP [dm6]	T	A	2.524e^-4	0.766	EXON CR45319 & 1 other
2R	9332483	2R_9332483_SNP [dm3] 2R_13444978_SNP [dm6]	A	G	2.525e^-4	0.766	SYNONYMOUS_CODING cnn DOWNSTREAM CG30062
X	5758545	X_5758545_SNP [dm3] X_5864512_SNP [dm6]	C	G	2.533e^-4	0.766	DOWNSTREAM CG43137 INTERGENIC
2R	16957488	2R_16957488_DEL [dm3] 2R_21069983_DEL [dm6]	ATATA	A	2.537e^-4	0.766	UPSTREAM Cht9 & 1 other DOWNSTREAM CG10527 & 1 other INTERGENIC
2L	19903028	2L_19903028_SNP [dm3] 2L_19903028_SNP [dm6]	C	A	2.547e^-4	0.766	INTRON sick	TF binding site BDTNP1_TFBS_da
2R	8314753	2R_8314753_SNP [dm3] 2R_12427248_SNP [dm6]	A	T	2.548e^-4	0.766	SYNONYMOUS_CODING CG13154 DOWNSTREAM CG8525	TF binding site mE1_TFBS_chinmo
3L	8776599	3L_8776599_DEL [dm3] 3L_8783499_DEL [dm6]	AC	A	2.551e^-4	0.766	INTRON Fhos
2L	13030083	2L_13030083_SNP [dm3] 2L_13030083_SNP [dm6]	T	C	2.563e^-4	0.766	SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4156095	2L_4156095_SNP [dm3] 2L_4156095_SNP [dm6]	G	A	2.566e^-4	0.766	INTERGENIC
2R	1260830	2R_1260830_SNP [dm3] 2R_5373325_SNP [dm6]	C	T	2.567e^-4	0.766	INTERGENIC	transposable element FlyBase
2R	6756780	2R_6756780_SNP [dm3] 2R_10869275_SNP [dm6]	G	C	2.570e^-4	0.766	INTRON CG30015
3L	22127795	3L_22127795_SNP [dm3] 3L_22134695_SNP [dm6]	A	C	2.571e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_Kr mE1_TFBS_Trl
2L	21884703	2L_21884703_SNP [dm3] 2L_21884703_SNP [dm6]	T	C	2.576e^-4	0.766	INTERGENIC
2L	16576819	2L_16576819_SNP [dm3] 2L_16576819_SNP [dm6]	T	A	2.578e^-4	0.766	INTRON CG42389
X	14018554	X_14018554_SNP [dm3] X_14124521_SNP [dm6]	G	T	2.578e^-4	0.766	INTERGENIC
2L	2561633	2L_2561633_SNP [dm3] 2L_2561633_SNP [dm6]	A	G	2.585e^-4	0.766	DOWNSTREAM Cyp309a1 INTERGENIC
2L	6737085	2L_6737085_SNP [dm3] 2L_6737085_SNP [dm6]	G	T	2.586e^-4	0.766	SYNONYMOUS_CODING TTLL3A DOWNSTREAM TTLL3B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	7890613	2R_7890613_SNP [dm3] 2R_12003108_SNP [dm6]	A	G	2.586e^-4	0.766	SYNONYMOUS_CODING otk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3547426	2L_3547426_SNP [dm3] 2L_3547426_SNP [dm6]	A	G	2.588e^-4	0.766	UTR_3_PRIME drm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1131203	3L_1131203_SNP [dm3] 3L_1131203_SNP [dm6]	A	C	2.590e^-4	0.766	INTERGENIC	regulatory region REDfly_CRMs
2R	8010674	2R_8010674_SNP [dm3] 2R_12123169_SNP [dm6]	G	T	2.593e^-4	0.766	INTERGENIC
3R	22122876	3R_22122876_SNP [dm3] 3R_26297154_SNP [dm6]	G	T	2.594e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11137760	2L_11137760_SNP [dm3] 2L_11137760_SNP [dm6]	T	C	2.596e^-4	0.766	SPLICE_SITE_REGION hgo DOWNSTREAM Gyc32E INTRON hgo
2R	17181164	2R_17181164_SNP [dm3] 2R_21293659_SNP [dm6]	A	T	2.598e^-4	0.766	UPSTREAM RpL29 & 1 other DOWNSTREAM CG9752 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
2L	20828685	2L_20828685_SNP [dm3] 2L_20828685_SNP [dm6]	C	T	2.599e^-4	0.766	UPSTREAM CG31673 DOWNSTREAM CG9331 INTERGENIC
3L	4735207	3L_4735207_SNP [dm3] 3L_4735207_SNP [dm6]	T	A	2.600e^-4	0.766	INTRON RhoGEF64C
3R	23936295	3R_23936295_SNP [dm3] 3R_28110573_SNP [dm6]	T	A	2.602e^-4	0.766	INTERGENIC
3L	6675067	3L_6675067_SNP [dm3] 3L_6681967_SNP [dm6]	G	A	2.604e^-4	0.766	INTERGENIC
2R	6781783	2R_6781783_SNP [dm3] 2R_10894278_SNP [dm6]	G	T	2.605e^-4	0.766	UTR_5_PRIME cag UPSTREAM CG12942 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	9317498	2R_9317498_SNP [dm3] 2R_13429993_SNP [dm6]	G	A	2.611e^-4	0.766	UPSTREAM CG42321 & 1 other DOWNSTREAM tRNA:I:49Fa & 1 other INTRON CG42321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8314660	2R_8314660_SNP [dm3] 2R_12427155_SNP [dm6]	G	A	2.612e^-4	0.766	SYNONYMOUS_CODING CG13154 DOWNSTREAM CG8525	TF binding site mE1_TFBS_chinmo
3L	23034892	3L_23034892_SNP [dm3] 3L_23041792_SNP [dm6]	T	C	2.617e^-4	0.766	INTERGENIC
3L	2890280	3L_2890280_SNP [dm3] 3L_2890280_SNP [dm6]	A	G	2.617e^-4	0.766	INTRON spz5
2L	13924224	2L_13924224_SNP [dm3] 2L_13924224_SNP [dm6]	C	T	2.626e^-4	0.766	UPSTREAM CG16886 INTRON Ance-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24417096	3R_24417096_SNP [dm3] 3R_28591374_SNP [dm6]	G	C	2.627e^-4	0.766	EXON MRE23	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_cnc
X	13246987	X_13246987_SNP [dm3] X_13352954_SNP [dm6]	G	A	2.631e^-4	0.766	INTERGENIC
2L	13882921	2L_13882921_SNP [dm3] 2L_13882921_SNP [dm6]	A	G	2.631e^-4	0.766	INTRON CenG1A
3R	22663320	3R_22663320_SNP [dm3] 3R_26837598_SNP [dm6]	T	C	2.634e^-4	0.766	INTRON Tl
2L	14254717	2L_14254717_DEL [dm3] 2L_14254717_DEL [dm6]	TC	T	2.636e^-4	0.766	INTERGENIC
X	5289897	X_5289897_SNP [dm3] X_5395864_SNP [dm6]	A	T	2.639e^-4	0.766	INTRON SK
3L	23048167	3L_23048167_SNP [dm3] 3L_23055067_SNP [dm6]	C	T	2.641e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
2R	13240346	2R_13240346_SNP [dm3] 2R_17352841_SNP [dm6]	T	C	2.652e^-4	0.766	UTR_3_PRIME mbl INTRON mbl
2R	19711507	2R_19711507_SNP [dm3] 2R_23823984_SNP [dm6]	C	G	2.661e^-4	0.766	INTRON CG5549 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8009988	2R_8009988_SNP [dm3] 2R_12122483_SNP [dm6]	C	T	2.662e^-4	0.766	INTERGENIC
3L	4168308	3L_4168308_SNP [dm3] 3L_4168308_SNP [dm6]	C	T	2.663e^-4	0.766	UPSTREAM mas EXON CR44529	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	12395159	2L_12395159_SNP [dm3] 2L_12395159_SNP [dm6]	A	G	2.667e^-4	0.766	INTRON bru-2
2R	12619597	2R_12619597_SNP [dm3] 2R_16732092_SNP [dm6]	C	T	2.667e^-4	0.766	UTR_5_PRIME CG30463 UPSTREAM CG30463	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3R	26399527	3R_26399527_SNP [dm3] 3R_30573805_SNP [dm6]	C	T	2.676e^-4	0.766	UTR_3_PRIME tmod INTRON tmod
2L	14566880	2L_14566880_SNP [dm3] 2L_14566880_SNP [dm6]	T	C	2.690e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12198803	2L_12198803_SNP [dm3] 2L_12198803_SNP [dm6]	G	A	2.694e^-4	0.766	INTRON aret
2R	14292249	2R_14292249_SNP [dm3] 2R_18404744_SNP [dm6]	G	T	2.697e^-4	0.766	SYNONYMOUS_CODING GstE5 DOWNSTREAM GstE4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5149689	2L_5149689_SNP [dm3] 2L_5149689_SNP [dm6]	G	A	2.698e^-4	0.766	INTRON Msp300
2R	16250886	2R_16250886_SNP [dm3] 2R_20363381_SNP [dm6]	A	T	2.699e^-4	0.766	INTERGENIC
3R	22766693	3R_22766693_SNP [dm3] 3R_26940971_SNP [dm6]	G	T	2.701e^-4	0.766	INTRON sda
2R	19710822	2R_19710822_SNP [dm3] 2R_23823299_SNP [dm6]	T	A	2.701e^-4	0.766	DOWNSTREAM CG4763 INTRON CG5549	TF binding site mE1_TFBS_chinmo
2L	3547615	2L_3547615_SNP [dm3] 2L_3547615_SNP [dm6]	C	A	2.713e^-4	0.766	UTR_3_PRIME drm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15287170	2R_15287170_SNP [dm3] 2R_19399665_SNP [dm6]	G	A	2.720e^-4	0.766	UTR_3_PRIME hts UPSTREAM CR43430 INTRON hts
3R	15754988	3R_15754988_SNP [dm3] 3R_19929266_SNP [dm6]	A	G	2.723e^-4	0.766	UPSTREAM CG4459 DOWNSTREAM Hs6st INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	3432924	X_3432924_SNP [dm3] X_3538891_SNP [dm6]	A	G	2.726e^-4	0.766	INTRON CG32791
3R	19067610	3R_19067610_SNP [dm3] 3R_23241888_SNP [dm6]	G	A	2.727e^-4	0.766	INTRON CG4467
2L	5868088	2L_5868088_SNP [dm3] 2L_5868088_SNP [dm6]	G	A	2.730e^-4	0.766	INTRON rau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13376784	3L_13376784_SNP [dm3] 3L_13383684_SNP [dm6]	A	C	2.740e^-4	0.766	NON_SYNONYMOUS_CODING ImpL1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2565595	X_2565595_SNP [dm3] X_2671562_SNP [dm6]	T	C	2.741e^-4	0.766	INTRON sgg
3L	13123133	3L_13123133_SNP [dm3] 3L_13130033_SNP [dm6]	A	G	2.746e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	23142968	3L_23142968_SNP [dm3] 3L_23149868_SNP [dm6]	T	C	2.761e^-4	0.766	NON_SYNONYMOUS_CODING CG32350 EXON CR45164	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_ttk
3R	22122934	3R_22122934_SNP [dm3] 3R_26297212_SNP [dm6]	G	A	2.763e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	7753155	3R_7753155_SNP [dm3] 3R_11927433_SNP [dm6]	C	T	2.763e^-4	0.766	INTRON Cad87A
X	12897964	X_12897964_SNP [dm3] X_13003931_SNP [dm6]	G	C	2.770e^-4	0.766	DOWNSTREAM CG15719 INTRON rad
3L	10565065	3L_10565065_SNP [dm3] 3L_10571965_SNP [dm6]	C	G	2.770e^-4	0.766	INTRON A2bp1
X	5543907	X_5543907_SNP [dm3] X_5649874_SNP [dm6]	A	C	2.784e^-4	0.766	DOWNSTREAM CG42265 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5868800	2L_5868800_SNP [dm3] 2L_5868800_SNP [dm6]	T	C	2.796e^-4	0.766	INTRON rau
2R	7882983	2R_7882983_SNP [dm3] 2R_11995478_SNP [dm6]	C	T	2.801e^-4	0.766	EXON CR45319 & 1 other
2R	7882985	2R_7882985_SNP [dm3] 2R_11995480_SNP [dm6]	C	G	2.801e^-4	0.766	EXON CR45319 & 1 other
3L	6675475	3L_6675475_SNP [dm3] 3L_6682375_SNP [dm6]	C	G	2.802e^-4	0.766	INTERGENIC
2L	3612868	2L_3612868_SNP [dm3] 2L_3612868_SNP [dm6]	A	G	2.803e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12418757	3R_12418757_INS [dm3] 3R_16593035_INS [dm6]	GGGTC	TATATATACGG...	2.807e^-4	0.766	INTERGENIC
3R	12418795	3R_12418795_SNP [dm3] 3R_16593073_SNP [dm6]	G	A	2.807e^-4	0.766	INTERGENIC
2R	17774166	2R_17774166_SNP [dm3] 2R_21886661_SNP [dm6]	A	T	2.812e^-4	0.766	INTRON Fili
2R	8721233	2R_8721233_DEL [dm3] 2R_12833728_DEL [dm6]	GGATGCAGCTG...	G	2.822e^-4	0.766	INTERGENIC
2R	2758378	2R_2758378_SNP [dm3] 2R_6870873_SNP [dm6]	C	A	2.823e^-4	0.766	INTRON coro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8795032	2R_8795032_SNP [dm3] 2R_12907527_SNP [dm6]	C	G	2.824e^-4	0.766	DOWNSTREAM CR44461 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16441949	2R_16441949_SNP [dm3] 2R_20554444_SNP [dm6]	T	A	2.830e^-4	0.766	INTERGENIC
3R	20804626	3R_20804626_SNP [dm3] 3R_24978904_SNP [dm6]	G	C	2.836e^-4	0.766	INTERGENIC
2R	9914200	2R_9914200_INS [dm3] 2R_14026695_INS [dm6]	T	TAGATGT	2.840e^-4	0.766	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9914217	2R_9914217_SNP [dm3] 2R_14026712_SNP [dm6]	C	G	2.840e^-4	0.766	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9914218	2R_9914218_SNP [dm3] 2R_14026713_SNP [dm6]	T	A	2.840e^-4	0.766	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9914221	2R_9914221_INS [dm3] 2R_14026716_INS [dm6]	A	AGACTAATTGGGGA...	2.840e^-4	0.766	INTRON mam	TF binding site BDTNP1_TFBS_dl
2L	16522437	2L_16522437_SNP [dm3] 2L_16522437_SNP [dm6]	T	A	2.850e^-4	0.766	INTRON CG5953	TF binding site BDTNP1_TFBS_dl
3L	7427146	3L_7427146_SNP [dm3] 3L_7434046_SNP [dm6]	C	T	2.852e^-4	0.766	SYNONYMOUS_CODING Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
2L	7081398	2L_7081398_SNP [dm3] 2L_7081398_SNP [dm6]	G	A	2.855e^-4	0.766	INTRON Pvf2
2L	20598171	2L_20598171_SNP [dm3] 2L_20598171_SNP [dm6]	G	T	2.856e^-4	0.766	INTRON CR44909
2R	18065519	2R_18065519_SNP [dm3] 2R_22178014_SNP [dm6]	G	A	2.858e^-4	0.766	SYNONYMOUS_CODING CG11170 DOWNSTREAM CG6758
3L	12111186	3L_12111186_SNP [dm3] 3L_12118086_SNP [dm6]	C	A	2.864e^-4	0.766	UPSTREAM ssp DOWNSTREAM l_3_j2D3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	6763145	2R_6763145_SNP [dm3] 2R_10875640_SNP [dm6]	A	T	2.873e^-4	0.766	UPSTREAM nclb & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_Ubx
3R	7089376	3R_7089376_SNP [dm3] 3R_11263654_SNP [dm6]	G	T	2.875e^-4	0.766	INTERGENIC
3L	13261826	3L_13261826_SNP [dm3] 3L_13268726_SNP [dm6]	T	G	2.879e^-4	0.766	INTRON caps
2L	3896018	2L_3896018_SNP [dm3] 2L_3896018_SNP [dm6]	A	T	2.880e^-4	0.766	UTR_5_PRIME capu INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	13376795	3L_13376795_SNP [dm3] 3L_13383695_SNP [dm6]	C	T	2.885e^-4	0.766	SYNONYMOUS_CODING ImpL1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2538204	2L_2538204_SNP [dm3] 2L_2538204_SNP [dm6]	T	A	2.885e^-4	0.766	INTERGENIC
2L	12986878	2L_12986878_SNP [dm3] 2L_12986878_SNP [dm6]	T	A	2.899e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23828744	3R_23828744_SNP [dm3] 3R_28003022_SNP [dm6]	A	T	2.899e^-4	0.766	INTERGENIC
2R	15839488	2R_15839488_DEL [dm3] 2R_19951983_DEL [dm6]	GC	G	2.904e^-4	0.766	DOWNSTREAM CG10822 INTERGENIC
2R	9914202	2R_9914202_SNP [dm3] 2R_14026697_SNP [dm6]	A	T	2.905e^-4	0.766	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	8795034	2R_8795034_SNP [dm3] 2R_12907529_SNP [dm6]	A	G	2.909e^-4	0.766	DOWNSTREAM CR44461 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9527249	2L_9527249_SNP [dm3] 2L_9527249_SNP [dm6]	T	A	2.919e^-4	0.766	INTRON Oatp30B
2L	5864230	2L_5864230_SNP [dm3] 2L_5864230_SNP [dm6]	G	T	2.922e^-4	0.766	INTRON rau
3R	7561628	3R_7561628_SNP [dm3] 3R_11735906_SNP [dm6]	C	G	2.925e^-4	0.766	DOWNSTREAM Blm INTRON CG14721	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	5856643	2L_5856643_INS [dm3] 2L_5856643_INS [dm6]	G	GG	2.931e^-4	0.766	UTR_3_PRIME TrissinR
3R	19535457	3R_19535457_SNP [dm3] 3R_23709735_SNP [dm6]	A	T	2.934e^-4	0.766	UPSTREAM CG10301 INTERGENIC
2L	9527161	2L_9527161_SNP [dm3] 2L_9527161_SNP [dm6]	A	T	2.934e^-4	0.766	INTRON Oatp30B
X	16164036	X_16164036_SNP [dm3] X_16270003_SNP [dm6]	G	A	2.935e^-4	0.766	SYNONYMOUS_CODING kat80 UPSTREAM Mfe2
2L	3897414	2L_3897414_SNP [dm3] 2L_3897414_SNP [dm6]	T	C	2.942e^-4	0.766	INTRON capu
3R	22719064	3R_22719064_INS [dm3] 3R_26893342_INS [dm6]	C	CC	2.943e^-4	0.766	INTRON T48	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8764932	3R_8764932_SNP [dm3] 3R_12939210_SNP [dm6]	T	A	2.950e^-4	0.766	INTERGENIC
3L	6659811	3L_6659811_SNP [dm3] 3L_6666711_SNP [dm6]	T	G	2.952e^-4	0.766	NON_SYNONYMOUS_CODING CG32395 UPSTREAM CR45173
3L	23178010	3L_23178010_SNP [dm3] 3L_23184910_SNP [dm6]	G	A	2.961e^-4	0.766	UPSTREAM CR43967 INTRON CG34031	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20703453	3R_20703453_SNP [dm3] 3R_24877731_SNP [dm6]	A	C	2.963e^-4	0.766	NON_SYNONYMOUS_CODING CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14570652	2L_14570652_SNP [dm3] 2L_14570652_SNP [dm6]	G	T	2.973e^-4	0.766	INTERGENIC
2L	3897175	2L_3897175_SNP [dm3] 2L_3897175_SNP [dm6]	G	A	2.988e^-4	0.766	INTRON capu
2L	5864670	2L_5864670_INS [dm3] 2L_5864670_INS [dm6]	CC	TGA	2.988e^-4	0.766	INTRON rau	TF binding site BDTNP1_TFBS_twi
2R	9434306	2R_9434306_SNP [dm3] 2R_13546801_SNP [dm6]	C	T	2.990e^-4	0.766	UTR_5_PRIME CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	19055674	3R_19055674_SNP [dm3] 3R_23229952_SNP [dm6]	T	A	2.994e^-4	0.766	UTR_3_PRIME CG4467
X	20899076	X_20899076_SNP [dm3] X_21028049_SNP [dm6]	G	A	2.995e^-4	0.766	DOWNSTREAM CG1529 INTRON CG1532	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	9981166	2L_9981166_INS [dm3] 2L_9981166_INS [dm6]	T	TT	2.999e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	24417099	3R_24417099_SNP [dm3] 3R_28591377_SNP [dm6]	G	A	2.999e^-4	0.766	EXON MRE23	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2L	21623286	2L_21623286_DEL [dm3] 2L_21623286_DEL [dm6]	GCG	G	2.999e^-4	0.766	INTRON CG2201	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	1262625	2R_1262625_SNP [dm3] 2R_5375120_SNP [dm6]	C	T	3.001e^-4	0.766	INTERGENIC	transposable element FlyBase
X	2192368	X_2192368_SNP [dm3] X_2298335_SNP [dm6]	T	A	3.002e^-4	0.766	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	17727678	2L_17727678_SNP [dm3] 2L_17727678_SNP [dm6]	A	T	3.003e^-4	0.766	INTRON CadN
2R	15304395	2R_15304395_SNP [dm3] 2R_19416890_SNP [dm6]	C	A	3.014e^-4	0.766	INTRON hts
2L	11200104	2L_11200104_SNP [dm3] 2L_11200104_SNP [dm6]	C	T	3.018e^-4	0.766	INTRON Ca-beta
3R	22122886	3R_22122886_SNP [dm3] 3R_26297164_SNP [dm6]	A	C	3.026e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22419623	3R_22419623_SNP [dm3] 3R_26593901_SNP [dm6]	A	T	3.027e^-4	0.766	INTRON scrib
3R	24417180	3R_24417180_SNP [dm3] 3R_28591458_SNP [dm6]	T	A	3.034e^-4	0.766	DOWNSTREAM MRE23 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2R	9435443	2R_9435443_SNP [dm3] 2R_13547938_SNP [dm6]	A	G	3.045e^-4	0.766	UPSTREAM CG6145 DOWNSTREAM CG33156 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16250887	2R_16250887_SNP [dm3] 2R_20363382_SNP [dm6]	T	A	3.049e^-4	0.766	INTERGENIC
X	16163802	X_16163802_SNP [dm3] X_16269769_SNP [dm6]	T	G	3.049e^-4	0.766	INTRON kat80
2R	6555264	2R_6555264_SNP [dm3] 2R_10667759_SNP [dm6]	G	T	3.050e^-4	0.766	INTERGENIC
2R	19710771	2R_19710771_SNP [dm3] 2R_23823248_SNP [dm6]	C	A	3.057e^-4	0.766	DOWNSTREAM CG4763 INTRON CG5549	TF binding site mE1_TFBS_chinmo
X	8142539	X_8142539_INS [dm3] X_8248506_INS [dm6]	G	GTATG	3.062e^-4	0.766	DOWNSTREAM ND75 & 1 other INTERGENIC
2R	11791357	2R_11791357_MNP [dm3] 2R_15903852_MNP [dm6]	GGA	ACG	3.065e^-4	0.766	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11856976	2R_11856976_SNP [dm3] 2R_15969471_SNP [dm6]	C	T	3.067e^-4	0.766	NON_SYNONYMOUS_CODING Strn-Mlck
2R	1261352	2R_1261352_SNP [dm3] 2R_5373847_SNP [dm6]	A	G	3.067e^-4	0.766	INTERGENIC	transposable element FlyBase
2R	1262895	2R_1262895_SNP [dm3] 2R_5375390_SNP [dm6]	T	G	3.067e^-4	0.766	INTERGENIC	transposable element FlyBase
X	14018709	X_14018709_SNP [dm3] X_14124676_SNP [dm6]	C	G	3.075e^-4	0.766	INTERGENIC
2L	3612869	2L_3612869_SNP [dm3] 2L_3612869_SNP [dm6]	G	C	3.087e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18913804	3R_18913804_SNP [dm3] 3R_23088082_SNP [dm6]	T	C	3.089e^-4	0.766	INTRON CG13830	TF binding site mE1_TFBS_cad
2R	6918194	2R_6918194_SNP [dm3] 2R_11030689_SNP [dm6]	C	T	3.090e^-4	0.766	INTRON luna
X	2826919	X_2826919_SNP [dm3] X_2932886_SNP [dm6]	C	T	3.091e^-4	0.766	DOWNSTREAM CG32793 INTRON kirre
2R	7895933	2R_7895933_SNP [dm3] 2R_12008428_SNP [dm6]	G	A	3.096e^-4	0.766	INTRON otk	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3L	13232286	3L_13232286_DEL [dm3] 3L_13239186_DEL [dm6]	TGGT	T	3.101e^-4	0.766	INTRON caps	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9914300	2R_9914300_SNP [dm3] 2R_14026795_SNP [dm6]	A	G	3.101e^-4	0.766	INTRON mam	TF binding site BDTNP1_TFBS_dl
2L	8359034	2L_8359034_SNP [dm3] 2L_8359034_SNP [dm6]	G	A	3.108e^-4	0.766	SYNONYMOUS_CODING CG7627	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	19305928	3L_19305928_SNP [dm3] 3L_19312828_SNP [dm6]	G	A	3.110e^-4	0.766	INTRON pip	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20532688	X_20532688_SNP [dm3] X_20661661_SNP [dm6]	A	C	3.111e^-4	0.766	UPSTREAM CG1835 DOWNSTREAM Cyp6v1 INTERGENIC
2R	7886371	2R_7886371_SNP [dm3] 2R_11998866_SNP [dm6]	A	G	3.112e^-4	0.766	INTERGENIC
2R	17475596	2R_17475596_SNP [dm3] 2R_21588091_SNP [dm6]	C	G	3.113e^-4	0.766	INTERGENIC
3R	26039142	3R_26039142_SNP [dm3] 3R_30213420_SNP [dm6]	A	T	3.119e^-4	0.766	UTR_3_PRIME CecB DOWNSTREAM CecA2 & 1 other
2L	2561434	2L_2561434_SNP [dm3] 2L_2561434_SNP [dm6]	G	A	3.122e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	16531661	X_16531661_SNP [dm3] X_16637628_SNP [dm6]	G	T	3.129e^-4	0.766	UPSTREAM RpS19a & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	27209842	3R_27209842_SNP [dm3] 3R_31384120_SNP [dm6]	C	T	3.139e^-4	0.766	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_Trl
2R	2746322	2R_2746322_SNP [dm3] 2R_6858817_SNP [dm6]	G	C	3.147e^-4	0.766	INTERGENIC
2R	3659431	2R_3659431_SNP [dm3] 2R_7771926_SNP [dm6]	G	A	3.152e^-4	0.766	INTRON CG30497 & 1 other
2R	9317781	2R_9317781_SNP [dm3] 2R_13430276_SNP [dm6]	G	T	3.158e^-4	0.766	UPSTREAM CG42321 & 1 other DOWNSTREAM tRNA:I:49Fa & 1 other INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3316763	3L_3316763_SNP [dm3] 3L_3316763_SNP [dm6]	T	C	3.171e^-4	0.766	UPSTREAM Drsl5 DOWNSTREAM Drsl4 INTERGENIC
3R	10269493	3R_10269493_SNP [dm3] 3R_14443771_SNP [dm6]	G	A	3.173e^-4	0.766	INTRON cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16429995	2L_16429995_SNP [dm3] 2L_16429995_SNP [dm6]	G	A	3.179e^-4	0.766	INTRON CG5888
3L	12589779	3L_12589779_SNP [dm3] 3L_12596679_SNP [dm6]	T	A	3.184e^-4	0.766	DOWNSTREAM ara INTERGENIC
2L	3645046	2L_3645046_SNP [dm3] 2L_3645046_SNP [dm6]	G	A	3.192e^-4	0.766	INTRON for
2L	14792600	2L_14792600_SNP [dm3] 2L_14792600_SNP [dm6]	G	C	3.193e^-4	0.766	INTERGENIC
2L	10428731	2L_10428731_SNP [dm3] 2L_10428731_SNP [dm6]	A	G	3.194e^-4	0.766	UPSTREAM CG5188 DOWNSTREAM KdelR INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20606892	2L_20606892_SNP [dm3] 2L_20606892_SNP [dm6]	A	T	3.199e^-4	0.766	DOWNSTREAM CR43608 INTRON CR44909
3L	11144558	3L_11144558_SNP [dm3] 3L_11151458_SNP [dm6]	A	C	3.205e^-4	0.766	UTR_5_PRIME CG32082 UPSTREAM CG6216
3L	16949957	3L_16949957_SNP [dm3] 3L_16956857_SNP [dm6]	T	G	3.205e^-4	0.766	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl
2L	5865178	2L_5865178_SNP [dm3] 2L_5865178_SNP [dm6]	G	A	3.212e^-4	0.766	INTRON rau	TF binding site BDTNP1_TFBS_twi
2L	21325541	2L_21325541_SNP [dm3] 2L_21325541_SNP [dm6]	A	G	3.214e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8618140	2R_8618140_SNP [dm3] 2R_12730635_SNP [dm6]	G	T	3.215e^-4	0.766	INTRON CG42663	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	23047116	3L_23047116_SNP [dm3] 3L_23054016_SNP [dm6]	A	G	3.218e^-4	0.766	INTERGENIC	transposable element FlyBase
X	19232452	X_19232452_SNP [dm3] X_19338419_SNP [dm6]	A	G	3.220e^-4	0.766	INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_dl
2R	8000886	2R_8000886_SNP [dm3] 2R_12113381_SNP [dm6]	A	G	3.225e^-4	0.766	INTRON jeb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3684457	2L_3684457_SNP [dm3] 2L_3684457_SNP [dm6]	A	C	3.234e^-4	0.766	SYNONYMOUS_CODING CG34340	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15412016	2L_15412016_SNP [dm3] 2L_15412016_SNP [dm6]	C	A	3.239e^-4	0.766	INTERGENIC
3R	24437711	3R_24437711_SNP [dm3] 3R_28611989_SNP [dm6]	C	G	3.240e^-4	0.766	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3048290	3L_3048290_INS [dm3] 3L_3048290_INS [dm6]	C	CTGAGC	3.244e^-4	0.766	INTRON Sk2	TF binding site mE1_TFBS_cad
2R	9914210	2R_9914210_SNP [dm3] 2R_14026705_SNP [dm6]	A	T	3.246e^-4	0.766	INTRON mam	TF binding site BDTNP1_TFBS_dl
3R	2619106	3R_2619106_SNP [dm3] 3R_6793384_SNP [dm6]	G	A	3.273e^-4	0.766	INTRON Dfd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14570706	2L_14570706_SNP [dm3] 2L_14570706_SNP [dm6]	C	A	3.275e^-4	0.766	INTERGENIC
2R	1309255	2R_1309255_INS [dm3] 2R_5421750_INS [dm6]	A	AA	3.275e^-4	0.766	INTRON laccase2	TF binding site mE1_TFBS_sens
3R	26111188	3R_26111188_SNP [dm3] 3R_30285466_SNP [dm6]	A	G	3.277e^-4	0.766	INTRON hdc	TF binding site mE1_TFBS_HSA
3R	22766700	3R_22766700_SNP [dm3] 3R_26940978_SNP [dm6]	G	A	3.282e^-4	0.766	INTRON sda
X	995160	X_995160_DEL [dm3] X_1101127_DEL [dm6]	GA	T	3.308e^-4	0.766	INTRON CG3655
3R	17220132	3R_17220132_SNP [dm3] 3R_21394410_SNP [dm6]	C	G	3.323e^-4	0.766	INTERGENIC	regulatory region REDfly_CRMs
3L	6307099	3L_6307099_SNP [dm3] 3L_6313999_SNP [dm6]	C	T	3.330e^-4	0.766	INTERGENIC
2L	15948317	2L_15948317_SNP [dm3] 2L_15948317_SNP [dm6]	T	G	3.334e^-4	0.766	INTRON beat-Ib
2R	8948003	2R_8948003_SNP [dm3] 2R_13060498_SNP [dm6]	A	C	3.347e^-4	0.766	INTRON Drl-2
3R	12742171	3R_12742171_SNP [dm3] 3R_16916449_SNP [dm6]	T	A	3.349e^-4	0.766	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	5383131	2L_5383131_MNP [dm3] 2L_5383131_MNP [dm6]	AAC	TTT	3.350e^-4	0.766	INTERGENIC
X	17276880	X_17276880_SNP [dm3] X_17382847_SNP [dm6]	G	A	3.351e^-4	0.766	INTERGENIC
2L	1258894	2L_1258894_SNP [dm3] 2L_1258894_SNP [dm6]	C	T	3.355e^-4	0.766	INTRON robo3
3R	25337722	3R_25337722_SNP [dm3] 3R_29512000_SNP [dm6]	A	G	3.356e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14857220	X_14857220_INS [dm3] X_14963187_INS [dm6]	T	TACTCAT	3.356e^-4	0.766	INTRON eag
X	5678481	X_5678481_SNP [dm3] X_5784448_SNP [dm6]	G	A	3.357e^-4	0.766	SYNONYMOUS_CODING CG42699
3L	7420889	3L_7420889_SNP [dm3] 3L_7427789_SNP [dm6]	A	T	3.360e^-4	0.766	INTRON CG42458
3R	13813911	3R_13813911_DEL [dm3] 3R_17988189_DEL [dm6]	TGCGG	T	3.364e^-4	0.766	INTRON cpo
3L	8042694	3L_8042694_SNP [dm3] 3L_8049594_SNP [dm6]	C	T	3.371e^-4	0.766	INTRON nmo	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	5720928	2L_5720928_SNP [dm3] 2L_5720928_SNP [dm6]	G	A	3.375e^-4	0.766	UPSTREAM sip1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med
3R	26399528	3R_26399528_SNP [dm3] 3R_30573806_SNP [dm6]	T	C	3.379e^-4	0.766	UTR_3_PRIME tmod INTRON tmod
3R	24437366	3R_24437366_SNP [dm3] 3R_28611644_SNP [dm6]	G	A	3.380e^-4	0.766	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20297290	2R_20297290_SNP [dm3] 2R_24409767_SNP [dm6]	T	G	3.382e^-4	0.766	UTR_5_PRIME SerT	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	13329316	2L_13329316_SNP [dm3] 2L_13329316_SNP [dm6]	A	G	3.383e^-4	0.766	INTRON CG43778
3R	25538547	3R_25538547_SNP [dm3] 3R_29712825_SNP [dm6]	G	A	3.387e^-4	0.766	DOWNSTREAM CR45569 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13823315	2L_13823315_SNP [dm3] 2L_13823315_SNP [dm6]	C	T	3.395e^-4	0.766	SYNONYMOUS_CODING b DOWNSTREAM tam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25876024	3R_25876024_SNP [dm3] 3R_30050302_SNP [dm6]	G	T	3.396e^-4	0.766	INTRON CG15528 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26394749	3R_26394749_SNP [dm3] 3R_30569027_SNP [dm6]	A	G	3.402e^-4	0.766	INTRON tmod	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12312661	2L_12312661_SNP [dm3] 2L_12312661_SNP [dm6]	G	A	3.404e^-4	0.766	UTR_3_PRIME aret DOWNSTREAM aret
3R	22650761	3R_22650761_SNP [dm3] 3R_26825039_SNP [dm6]	A	G	3.406e^-4	0.766	INTRON Tl
2R	8010375	2R_8010375_SNP [dm3] 2R_12122870_SNP [dm6]	T	G	3.412e^-4	0.766	INTERGENIC
2L	5872917	2L_5872917_SNP [dm3] 2L_5872917_SNP [dm6]	A	G	3.418e^-4	0.766	INTRON rau	TF binding site mE1_TFBS_sens
3R	14056479	3R_14056479_SNP [dm3] 3R_18230757_SNP [dm6]	G	A	3.422e^-4	0.766	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13246985	X_13246985_SNP [dm3] X_13352952_SNP [dm6]	G	T	3.424e^-4	0.766	INTERGENIC
3L	2559213	3L_2559213_SNP [dm3] 3L_2559213_SNP [dm6]	T	C	3.427e^-4	0.766	INTRON msn
3L	3756865	3L_3756865_SNP [dm3] 3L_3756865_SNP [dm6]	C	T	3.432e^-4	0.766	INTRON CG32264	TF binding site mE1_TFBS_Kr mE1_TFBS_Trl
3L	5008817	3L_5008817_SNP [dm3] 3L_5008817_SNP [dm6]	T	G	3.433e^-4	0.766	INTRON Con
3R	18984689	3R_18984689_SNP [dm3] 3R_23158967_SNP [dm6]	G	A	3.436e^-4	0.766	SYNONYMOUS_CODING VhaAC39-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	13054994	3L_13054994_SNP [dm3] 3L_13061894_SNP [dm6]	A	G	3.442e^-4	0.766	NON_SYNONYMOUS_CODING CG34428 UPSTREAM CG14115
X	16531659	X_16531659_SNP [dm3] X_16637626_SNP [dm6]	T	C	3.444e^-4	0.766	UPSTREAM RpS19a & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	16997074	2L_16997074_SNP [dm3] 2L_16997074_SNP [dm6]	T	G	3.449e^-4	0.766	INTERGENIC
2R	8002911	2R_8002911_SNP [dm3] 2R_12115406_SNP [dm6]	G	A	3.455e^-4	0.766	INTRON jeb	TF binding site BDTNP1_TFBS_twi
2R	7888893	2R_7888893_SNP [dm3] 2R_12001388_SNP [dm6]	G	T	3.462e^-4	0.766	DOWNSTREAM otk INTERGENIC
2R	13158304	2R_13158304_SNP [dm3] 2R_17270799_SNP [dm6]	C	T	3.465e^-4	0.766	INTRON mbl
3L	2419342	3L_2419342_SNP [dm3] 3L_2419342_SNP [dm6]	G	A	3.467e^-4	0.766	INTRON CG45186
2L	14792611	2L_14792611_SNP [dm3] 2L_14792611_SNP [dm6]	T	G	3.472e^-4	0.766	INTERGENIC
X	17440908	X_17440908_SNP [dm3] X_17546875_SNP [dm6]	T	C	3.474e^-4	0.766	INTRON CG43658
2L	8359022	2L_8359022_SNP [dm3] 2L_8359022_SNP [dm6]	C	T	3.474e^-4	0.766	SYNONYMOUS_CODING CG7627	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12376504	2L_12376504_SNP [dm3] 2L_12376504_SNP [dm6]	C	A	3.479e^-4	0.766	INTRON bru-2
2L	12376506	2L_12376506_SNP [dm3] 2L_12376506_SNP [dm6]	C	T	3.479e^-4	0.766	INTRON bru-2
2L	12376509	2L_12376509_INS [dm3] 2L_12376509_INS [dm6]	T	TTCGCATA	3.479e^-4	0.766	INTRON bru-2
3R	20402050	3R_20402050_SNP [dm3] 3R_24576328_SNP [dm6]	A	G	3.480e^-4	0.766	INTRON CG13624
2L	6618333	2L_6618333_SNP [dm3] 2L_6618333_SNP [dm6]	C	T	3.487e^-4	0.766	SYNONYMOUS_CODING CG11320 UPSTREAM CR44913	TF binding site mE1_TFBS_cad
2L	13132373	2L_13132373_SNP [dm3] 2L_13132373_SNP [dm6]	C	A	3.492e^-4	0.766	NON_SYNONYMOUS_CODING CG5122
2R	7890580	2R_7890580_SNP [dm3] 2R_12003075_SNP [dm6]	T	C	3.498e^-4	0.766	SYNONYMOUS_CODING otk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14258442	3R_14258442_SNP [dm3] 3R_18432720_SNP [dm6]	T	G	3.507e^-4	0.766	SYNONYMOUS_CODING fru
2R	19710799	2R_19710799_DEL [dm3] 2R_23823276_DEL [dm6]	GT	G	3.516e^-4	0.766	DOWNSTREAM CG4763 INTRON CG5549	TF binding site mE1_TFBS_chinmo
2R	16163955	2R_16163955_SNP [dm3] 2R_20276450_SNP [dm6]	T	G	3.518e^-4	0.766	DOWNSTREAM CG11788 INTRON CG9143
2L	15933353	2L_15933353_SNP [dm3] 2L_15933353_SNP [dm6]	A	G	3.518e^-4	0.766	INTRON beat-Ib
2L	21763249	2L_21763249_SNP [dm3] 2L_21763249_SNP [dm6]	C	T	3.521e^-4	0.766	INTRON CG31612
2L	9277513	2L_9277513_SNP [dm3] 2L_9277513_SNP [dm6]	T	A	3.522e^-4	0.766	INTRON Ggamma30A
3L	703200	3L_703200_SNP [dm3] 3L_703200_SNP [dm6]	A	G	3.529e^-4	0.766	INTERGENIC
2R	17182445	2R_17182445_SNP [dm3] 2R_21294940_SNP [dm6]	T	C	3.540e^-4	0.766	NON_SYNONYMOUS_CODING CG9752 UPSTREAM CG42672 DOWNSTREAM RpL29	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	9277514	2L_9277514_SNP [dm3] 2L_9277514_SNP [dm6]	A	C	3.543e^-4	0.766	INTRON Ggamma30A
2L	9077228	2L_9077228_SNP [dm3] 2L_9077228_SNP [dm6]	A	T	3.552e^-4	0.766	UTR_5_PRIME CG12439
3L	15609499	3L_15609499_SNP [dm3] 3L_15616399_SNP [dm6]	C	T	3.569e^-4	0.766	INTRON comm3
3R	25187133	3R_25187133_SNP [dm3] 3R_29361411_SNP [dm6]	A	G	3.583e^-4	0.766	INTERGENIC
2R	17398798	2R_17398798_SNP [dm3] 2R_21511293_SNP [dm6]	A	T	3.585e^-4	0.766	INTRON MESK2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	16570350	3R_16570350_SNP [dm3] 3R_20744628_SNP [dm6]	G	T	3.592e^-4	0.766	NON_SYNONYMOUS_CODING CG31200 UPSTREAM CG31199 INTRON CG42322	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18125863	3R_18125863_SNP [dm3] 3R_22300141_SNP [dm6]	A	T	3.594e^-4	0.766	UTR_5_PRIME CG7084
3L	4761284	3L_4761284_INS [dm3] 3L_4761284_INS [dm6]	G	GGCGAGGAGCAG...	3.600e^-4	0.766	INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
2L	20618735	2L_20618735_SNP [dm3] 2L_20618735_SNP [dm6]	T	C	3.606e^-4	0.766	UPSTREAM mir-288 INTRON CR44909
2R	4754048	2R_4754048_SNP [dm3] 2R_8866543_SNP [dm6]	C	A	3.617e^-4	0.766	INTRON RyR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10759052	3L_10759052_SNP [dm3] 3L_10765952_SNP [dm6]	C	A	3.624e^-4	0.766	INTERGENIC
3L	16631922	3L_16631922_SNP [dm3] 3L_16638822_SNP [dm6]	T	C	3.624e^-4	0.766	INTRON Abl
2R	7574102	2R_7574102_SNP [dm3] 2R_11686597_SNP [dm6]	A	T	3.627e^-4	0.766	UPSTREAM CG13196 INTRON Buffy	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	2418231	3L_2418231_SNP [dm3] 3L_2418231_SNP [dm6]	G	C	3.628e^-4	0.766	UTR_5_PRIME CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4519948	3L_4519948_SNP [dm3] 3L_4519948_SNP [dm6]	C	T	3.634e^-4	0.766	INTRON Tie
2R	6915744	2R_6915744_SNP [dm3] 2R_11028239_SNP [dm6]	C	T	3.635e^-4	0.766	INTRON luna
2R	11791363	2R_11791363_INS [dm3] 2R_15903858_INS [dm6]	A	AA	3.636e^-4	0.766	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8706462	2L_8706462_SNP [dm3] 2L_8706462_SNP [dm6]	G	A	3.643e^-4	0.766	SYNONYMOUS_CODING CG9314 INTRON Hnf4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17726295	2L_17726295_SNP [dm3] 2L_17726295_SNP [dm6]	A	G	3.646e^-4	0.766	INTRON CadN
3L	22127401	3L_22127401_SNP [dm3] 3L_22134301_SNP [dm6]	G	A	3.646e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	15839140	2R_15839140_SNP [dm3] 2R_19951635_SNP [dm6]	C	T	3.648e^-4	0.766	SYNONYMOUS_CODING CG10822
3R	25439397	3R_25439397_SNP [dm3] 3R_29613675_SNP [dm6]	G	C	3.652e^-4	0.766	INTRON alph
2R	17422852	2R_17422852_SNP [dm3] 2R_21535347_SNP [dm6]	C	A	3.658e^-4	0.766	DOWNSTREAM CG30286 INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
2L	5426989	2L_5426989_SNP [dm3] 2L_5426989_SNP [dm6]	C	G	3.659e^-4	0.766	INTERGENIC
2L	14059448	2L_14059448_INS [dm3] 2L_14059448_INS [dm6]	T	TTTG	3.659e^-4	0.766	INTRON nAChRalpha5
2L	5858923	2L_5858923_SNP [dm3] 2L_5858923_SNP [dm6]	A	C	3.666e^-4	0.766	DOWNSTREAM rau INTERGENIC
3R	14723380	3R_14723380_DEL [dm3] 3R_18897658_DEL [dm6]	TGGAC	T	3.671e^-4	0.766	UPSTREAM CG14297 INTERGENIC
3L	1424688	3L_1424688_DEL [dm3] 3L_1424688_DEL [dm6]	ATTTC	A	3.673e^-4	0.766	INTRON Ptp61F
2R	9244316	2R_9244316_SNP [dm3] 2R_13356811_SNP [dm6]	C	T	3.675e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26394712	3R_26394712_SNP [dm3] 3R_30568990_SNP [dm6]	T	A	3.678e^-4	0.766	INTRON tmod	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19588168	3R_19588168_SNP [dm3] 3R_23762446_SNP [dm6]	A	G	3.685e^-4	0.766	INTRON CG10217	TF binding site mE1_TFBS_sens
2L	10731430	2L_10731430_SNP [dm3] 2L_10731430_SNP [dm6]	T	A	3.690e^-4	0.766	UTR_3_PRIME CG6750 DOWNSTREAM CG17118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5671220	2L_5671220_SNP [dm3] 2L_5671220_SNP [dm6]	T	C	3.691e^-4	0.766	DOWNSTREAM Hsp60C INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9378788	2L_9378788_SNP [dm3] 2L_9378788_SNP [dm6]	A	C	3.693e^-4	0.766	INTRON Shawl
3L	10146634	3L_10146634_SNP [dm3] 3L_10153534_SNP [dm6]	A	T	3.700e^-4	0.766	DOWNSTREAM CG8072 INTRON dpr10
2L	1209552	2L_1209552_SNP [dm3] 2L_1209552_SNP [dm6]	T	C	3.702e^-4	0.766	INTERGENIC
3R	14660396	3R_14660396_SNP [dm3] 3R_18834674_SNP [dm6]	C	A	3.712e^-4	0.766	INTRON CG18208
2L	12443275	2L_12443275_SNP [dm3] 2L_12443275_SNP [dm6]	A	G	3.714e^-4	0.766	SYNONYMOUS_CODING Oatp33Ea
2L	5866602	2L_5866602_DEL [dm3] 2L_5866602_DEL [dm6]	TT	T	3.722e^-4	0.766	INTRON rau	TF binding site BDTNP1_TFBS_da
2L	15764094	2L_15764094_SNP [dm3] 2L_15764094_SNP [dm6]	T	G	3.723e^-4	0.766	UPSTREAM CG3793 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	2780747	2R_2780747_SNP [dm3] 2R_6893242_SNP [dm6]	A	G	3.726e^-4	0.766	INTRON CG30158
3R	17723475	3R_17723475_SNP [dm3] 3R_21897753_SNP [dm6]	G	A	3.729e^-4	0.766	INTRON CG6678
3R	17723476	3R_17723476_SNP [dm3] 3R_21897754_SNP [dm6]	A	T	3.729e^-4	0.766	INTRON CG6678
3L	16278753	3L_16278753_SNP [dm3] 3L_16285653_SNP [dm6]	T	A	3.732e^-4	0.766	UPSTREAM CG13047 INTERGENIC	TF binding site mE1_TFBS_cad
2R	9357617	2R_9357617_SNP [dm3] 2R_13470112_SNP [dm6]	G	C	3.755e^-4	0.766	INTRON arr
3R	27193025	3R_27193025_SNP [dm3] 3R_31367303_SNP [dm6]	A	C	3.755e^-4	0.766	NON_SYNONYMOUS_CODING CG34347
2R	15262379	2R_15262379_SNP [dm3] 2R_19374874_SNP [dm6]	T	G	3.756e^-4	0.766	UPSTREAM CG10062 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13107224	2L_13107224_SNP [dm3] 2L_13107224_SNP [dm6]	G	A	3.756e^-4	0.766	INTRON CG5142
2R	5805914	2R_5805914_SNP [dm3] 2R_9918409_SNP [dm6]	C	A	3.757e^-4	0.766	INTRON Mef2	TF binding site mE1_TFBS_chinmo
X	11911613	X_11911613_SNP [dm3] X_12017580_SNP [dm6]	T	C	3.757e^-4	0.766	SYNONYMOUS_CODING Chrac-16 DOWNSTREAM regucalcin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13924916	3R_13924916_SNP [dm3] 3R_18099194_SNP [dm6]	C	A	3.758e^-4	0.766	INTRON sr
2L	13822495	2L_13822495_SNP [dm3] 2L_13822495_SNP [dm6]	T	G	3.759e^-4	0.766	INTRON b
3L	8603324	3L_8603324_SNP [dm3] 3L_8610224_SNP [dm6]	C	T	3.762e^-4	0.766	SYNONYMOUS_CODING CG6282	TF binding site mE1_TFBS_cad
3L	21760257	3L_21760257_SNP [dm3] 3L_21767157_SNP [dm6]	T	A	3.766e^-4	0.766	UPSTREAM CG42689 INTRON Syn1
X	7917696	X_7917696_SNP [dm3] X_8023663_SNP [dm6]	A	T	3.769e^-4	0.766	INTRON Tbh
3R	22766686	3R_22766686_SNP [dm3] 3R_26940964_SNP [dm6]	G	A	3.781e^-4	0.766	INTRON sda
2L	5680283	2L_5680283_SNP [dm3] 2L_5680283_SNP [dm6]	C	A	3.783e^-4	0.766	DOWNSTREAM CG12511 INTERGENIC
2R	17024804	2R_17024804_SNP [dm3] 2R_21137299_SNP [dm6]	T	C	3.784e^-4	0.766	INTRON Magi
3L	5611836	3L_5611836_SNP [dm3] 3L_5618736_SNP [dm6]	C	T	3.785e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13822747	3R_13822747_INS [dm3] 3R_17997025_INS [dm6]	T	TGTATTATCGA...	3.796e^-4	0.766	INTRON cpo
2L	3635798	2L_3635798_SNP [dm3] 2L_3635798_SNP [dm6]	G	T	3.798e^-4	0.766	INTRON for
2L	8339286	2L_8339286_SNP [dm3] 2L_8339286_SNP [dm6]	G	T	3.798e^-4	0.766	INTRON CG14274
3R	22766642	3R_22766642_INS [dm3] 3R_26940920_INS [dm6]	A	AC	3.800e^-4	0.766	INTRON sda
2L	17727766	2L_17727766_SNP [dm3] 2L_17727766_SNP [dm6]	C	G	3.802e^-4	0.766	INTRON CadN
2L	20625302	2L_20625302_SNP [dm3] 2L_20625302_SNP [dm6]	T	A	3.806e^-4	0.766	EXON CR44909
3R	19847753	3R_19847753_SNP [dm3] 3R_24022031_SNP [dm6]	C	T	3.813e^-4	0.766	INTRON KrT95D
3R	26111772	3R_26111772_SNP [dm3] 3R_30286050_SNP [dm6]	T	C	3.816e^-4	0.766	INTRON hdc
3R	18989195	3R_18989195_SNP [dm3] 3R_23163473_SNP [dm6]	C	T	3.819e^-4	0.766	INTERGENIC
2L	6213939	2L_6213939_SNP [dm3] 2L_6213939_SNP [dm6]	C	T	3.842e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	10419540	3L_10419540_SNP [dm3] 3L_10426440_SNP [dm6]	T	G	3.845e^-4	0.766	INTERGENIC
2R	5093777	2R_5093777_SNP [dm3] 2R_9206272_SNP [dm6]	G	T	3.847e^-4	0.766	NON_SYNONYMOUS_CODING CG8027	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	18915903	2L_18915903_SNP [dm3] 2L_18915903_SNP [dm6]	G	A	3.850e^-4	0.766	DOWNSTREAM ssp3 INTERGENIC
3L	12200931	3L_12200931_SNP [dm3] 3L_12207831_SNP [dm6]	G	A	3.851e^-4	0.766	SYNONYMOUS_CODING app UTR_3_PRIME app	TF binding site mE1_TFBS_cad
3R	22285136	3R_22285136_SNP [dm3] 3R_26459414_SNP [dm6]	G	A	3.851e^-4	0.766	SYNONYMOUS_CODING CG14238
2L	12395281	2L_12395281_SNP [dm3] 2L_12395281_SNP [dm6]	T	A	3.852e^-4	0.766	INTRON bru-2
3R	8231349	3R_8231349_SNP [dm3] 3R_12405627_SNP [dm6]	T	C	3.852e^-4	0.766	UPSTREAM CG5167 INTRON Cyp9f2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16957463	2R_16957463_SNP [dm3] 2R_21069958_SNP [dm6]	C	T	3.857e^-4	0.766	UPSTREAM Cht9 & 1 other DOWNSTREAM CG10527 & 1 other INTERGENIC
2R	16250922	2R_16250922_SNP [dm3] 2R_20363417_SNP [dm6]	G	T	3.861e^-4	0.766	INTERGENIC
3R	19558313	3R_19558313_SNP [dm3] 3R_23732591_SNP [dm6]	T	G	3.867e^-4	0.766	UPSTREAM Hmgcr INTRON Rpn9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	6916442	2R_6916442_SNP [dm3] 2R_11028937_SNP [dm6]	A	T	3.876e^-4	0.766	INTRON luna
2L	11935125	2L_11935125_SNP [dm3] 2L_11935125_SNP [dm6]	G	A	3.877e^-4	0.766	SYNONYMOUS_CODING Or33a
2R	19158706	2R_19158706_SNP [dm3] 2R_23271183_SNP [dm6]	C	A	3.880e^-4	0.766	DOWNSTREAM ord & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25522714	3R_25522714_SNP [dm3] 3R_29696992_SNP [dm6]	T	A	3.884e^-4	0.766	UTR_3_PRIME dmrt99B	TF binding site BDTNP1_TFBS_twi
2L	5336035	2L_5336035_SNP [dm3] 2L_5336035_SNP [dm6]	G	C	3.885e^-4	0.766	UTR_5_PRIME fusl INTRON fusl
3R	7272025	3R_7272025_SNP [dm3] 3R_11446303_SNP [dm6]	G	T	3.888e^-4	0.766	UPSTREAM sals INTRON CG17230 & 1 other
3R	24568135	3R_24568135_SNP [dm3] 3R_28742413_SNP [dm6]	A	C	3.888e^-4	0.766	INTRON AstA-R2
3R	22935284	3R_22935284_SNP [dm3] 3R_27109562_SNP [dm6]	C	T	3.889e^-4	0.766	SYNONYMOUS_CODING gb EXON CR45209
3L	1258266	3L_1258266_SNP [dm3] 3L_1258266_SNP [dm6]	C	T	3.895e^-4	0.766	INTRON CG9134
2R	6915293	2R_6915293_SNP [dm3] 2R_11027788_SNP [dm6]	C	A	3.901e^-4	0.766	INTRON luna
3L	2703342	3L_2703342_SNP [dm3] 3L_2703342_SNP [dm6]	A	G	3.901e^-4	0.766	INTRON Fife
3R	8764209	3R_8764209_INS [dm3] 3R_12938487_INS [dm6]	A	AA	3.908e^-4	0.766	INTERGENIC
3L	5636411	3L_5636411_SNP [dm3] 3L_5643311_SNP [dm6]	A	G	3.912e^-4	0.766	UPSTREAM Blimp-1 INTRON Blimp-1
3L	13126691	3L_13126691_SNP [dm3] 3L_13133591_SNP [dm6]	G	A	3.921e^-4	0.766	INTERGENIC
2R	12023512	2R_12023512_SNP [dm3] 2R_16136007_SNP [dm6]	C	G	3.921e^-4	0.766	INTRON spin
2L	18908882	2L_18908882_SNP [dm3] 2L_18908882_SNP [dm6]	G	A	3.923e^-4	0.766	INTERGENIC
2L	13329343	2L_13329343_DEL [dm3] 2L_13329343_DEL [dm6]	AG	A	3.924e^-4	0.766	INTRON CG43778
X	14878004	X_14878004_SNP [dm3] X_14983971_SNP [dm6]	T	C	3.937e^-4	0.766	INTRON eag
2R	18512461	2R_18512461_SNP [dm3] 2R_22624956_SNP [dm6]	G	A	3.938e^-4	0.766	INTRON CG33143
3R	6306790	3R_6306790_SNP [dm3] 3R_10481068_SNP [dm6]	G	A	3.946e^-4	0.766	INTERGENIC
3R	26107837	3R_26107837_SNP [dm3] 3R_30282115_SNP [dm6]	C	T	3.950e^-4	0.766	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	22128044	3L_22128044_SNP [dm3] 3L_22134944_SNP [dm6]	T	A	3.953e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_Kr mE1_TFBS_Trl
3R	15972378	3R_15972378_SNP [dm3] 3R_20146656_SNP [dm6]	A	T	3.955e^-4	0.766	INTERGENIC
2R	11589107	2R_11589107_SNP [dm3] 2R_15701602_SNP [dm6]	G	T	3.957e^-4	0.766	INTRON CG30080 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6916413	2R_6916413_SNP [dm3] 2R_11028908_SNP [dm6]	T	G	3.959e^-4	0.766	INTRON luna
3L	7451067	3L_7451067_SNP [dm3] 3L_7457967_SNP [dm6]	G	A	3.963e^-4	0.766	SPLICE_SITE_REGION ppk26 INTRON ppk26
3L	2682405	3L_2682405_SNP [dm3] 3L_2682405_SNP [dm6]	G	A	3.968e^-4	0.766	NON_SYNONYMOUS_CODING Fife
2R	8646782	2R_8646782_SNP [dm3] 2R_12759277_SNP [dm6]	C	T	3.982e^-4	0.766	SYNONYMOUS_CODING Dgkepsilon DOWNSTREAM Nacalpha	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	13107227	2L_13107227_SNP [dm3] 2L_13107227_SNP [dm6]	A	G	3.982e^-4	0.766	INTRON CG5142	TF binding site mE1_TFBS_chinmo
2L	9278365	2L_9278365_SNP [dm3] 2L_9278365_SNP [dm6]	A	C	3.984e^-4	0.766	INTRON Ggamma30A
2L	14915869	2L_14915869_SNP [dm3] 2L_14915869_SNP [dm6]	C	G	3.999e^-4	0.766	INTRON CG42313
3R	27212691	3R_27212691_SNP [dm3] 3R_31386969_SNP [dm6]	G	T	4.006e^-4	0.766	INTRON CG1607	TF binding site mE1_TFBS_cad
2L	16576748	2L_16576748_SNP [dm3] 2L_16576748_SNP [dm6]	G	A	4.007e^-4	0.766	INTRON CG42389
2R	9904226	2R_9904226_SNP [dm3] 2R_14016721_SNP [dm6]	A	G	4.010e^-4	0.766	INTRON mam
3L	2841207	3L_2841207_INS [dm3] 3L_2841207_INS [dm6]	T	TT	4.013e^-4	0.766	INTRON CG43444
2L	12264606	2L_12264606_SNP [dm3] 2L_12264606_SNP [dm6]	G	A	4.018e^-4	0.766	INTRON aret
3R	14660439	3R_14660439_SNP [dm3] 3R_18834717_SNP [dm6]	C	A	4.036e^-4	0.766	INTRON CG18208
3L	16270089	3L_16270089_SNP [dm3] 3L_16276989_SNP [dm6]	T	A	4.038e^-4	0.766	UPSTREAM CG13065 INTERGENIC
3L	16192773	3L_16192773_SNP [dm3] 3L_16199673_SNP [dm6]	C	G	4.039e^-4	0.766	NON_SYNONYMOUS_CODING CG33688 UPSTREAM CG33689 DOWNSTREAM CG33687
3R	24417130	3R_24417130_SNP [dm3] 3R_28591408_SNP [dm6]	G	A	4.041e^-4	0.766	DOWNSTREAM MRE23 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2R	1321406	2R_1321406_SNP [dm3] 2R_5433901_SNP [dm6]	T	A	4.042e^-4	0.766	INTRON laccase2	transposable element FlyBase
X	9314767	X_9314767_SNP [dm3] X_9420734_SNP [dm6]	G	T	4.043e^-4	0.766	INTRON mgl
2L	3645050	2L_3645050_SNP [dm3] 2L_3645050_SNP [dm6]	G	C	4.048e^-4	0.766	INTRON for
2L	9241686	2L_9241686_SNP [dm3] 2L_9241686_SNP [dm6]	C	T	4.059e^-4	0.766	SYNONYMOUS_CODING tai	TF binding site mE1_TFBS_chinmo
2R	6757322	2R_6757322_SNP [dm3] 2R_10869817_SNP [dm6]	C	T	4.060e^-4	0.766	INTRON CG30015
3R	22766689	3R_22766689_SNP [dm3] 3R_26940967_SNP [dm6]	T	A	4.060e^-4	0.766	INTRON sda
2R	7886998	2R_7886998_SNP [dm3] 2R_11999493_SNP [dm6]	G	C	4.061e^-4	0.766	INTERGENIC
2R	6763169	2R_6763169_INS [dm3] 2R_10875664_INS [dm6]	C	TTTAAATATATAT...	4.073e^-4	0.766	UPSTREAM nclb & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_Ubx
3R	22014326	3R_22014326_SNP [dm3] 3R_26188604_SNP [dm6]	C	A	4.083e^-4	0.766	DOWNSTREAM CG34130 INTRON CG6073	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
2L	6715595	2L_6715595_SNP [dm3] 2L_6715595_SNP [dm6]	C	A	4.084e^-4	0.766	INTRON AkhR
2R	19491389	2R_19491389_SNP [dm3] 2R_23603866_SNP [dm6]	G	A	4.094e^-4	0.766	NON_SYNONYMOUS_CODING CG17664 DOWNSTREAM CG5398
X	7771311	X_7771311_SNP [dm3] X_7877278_SNP [dm6]	T	G	4.096e^-4	0.766	SYNONYMOUS_CODING Ir7d DOWNSTREAM Ir7c
2R	13587873	2R_13587873_SNP [dm3] 2R_17700368_SNP [dm6]	A	C	4.103e^-4	0.766	UPSTREAM snoRNA:U29:54Ec & 3 others DOWNSTREAM snoRNA:Me28S-A3407a & 2 others INTRON Uhg1
X	13844657	X_13844657_SNP [dm3] X_13950624_SNP [dm6]	A	C	4.109e^-4	0.766	INTRON mamo
2R	14956304	2R_14956304_SNP [dm3] 2R_19068799_SNP [dm6]	A	T	4.116e^-4	0.766	INTRON 5-HT1A
2R	9432313	2R_9432313_SNP [dm3] 2R_13544808_SNP [dm6]	T	C	4.128e^-4	0.766	INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
3R	7101467	3R_7101467_SNP [dm3] 3R_11275745_SNP [dm6]	G	A	4.131e^-4	0.766	INTRON CR31386
3R	26369965	3R_26369965_SNP [dm3] 3R_30544243_SNP [dm6]	C	T	4.131e^-4	0.766	INTRON tmod
2L	1551429	2L_1551429_SNP [dm3] 2L_1551429_SNP [dm6]	A	T	4.133e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_inv
2L	21325191	2L_21325191_SNP [dm3] 2L_21325191_SNP [dm6]	G	C	4.137e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
2R	18558265	2R_18558265_SNP [dm3] 2R_22670760_SNP [dm6]	A	G	4.137e^-4	0.766	START_GAINED RYBP UTR_5_PRIME RYBP UPSTREAM RYBP DOWNSTREAM CG13516	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	22126373	3L_22126373_DEL [dm3] 3L_22133273_DEL [dm6]	TT	T	4.141e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14712987	2R_14712987_SNP [dm3] 2R_18825482_SNP [dm6]	T	G	4.142e^-4	0.766	INTRON CG15097
2R	6761091	2R_6761091_SNP [dm3] 2R_10873586_SNP [dm6]	C	A	4.143e^-4	0.766	INTRON CG30015	TF binding site BDTNP1_TFBS_dl
2L	9378778	2L_9378778_SNP [dm3] 2L_9378778_SNP [dm6]	A	T	4.144e^-4	0.766	INTRON Shawl
2R	1320257	2R_1320257_SNP [dm3] 2R_5432752_SNP [dm6]	A	T	4.144e^-4	0.766	INTRON laccase2	transposable element FlyBase
3L	3797125	3L_3797125_SNP [dm3] 3L_3797125_SNP [dm6]	G	A	4.151e^-4	0.766	INTRON CG32264
2L	13107247	2L_13107247_SNP [dm3] 2L_13107247_SNP [dm6]	T	A	4.158e^-4	0.766	INTRON CG5142	TF binding site mE1_TFBS_chinmo
2L	13107254	2L_13107254_SNP [dm3] 2L_13107254_SNP [dm6]	T	A	4.158e^-4	0.766	INTRON CG5142	TF binding site mE1_TFBS_chinmo
3L	3287678	3L_3287678_SNP [dm3] 3L_3287678_SNP [dm6]	T	A	4.158e^-4	0.766	INTRON CG12017	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9077216	2L_9077216_SNP [dm3] 2L_9077216_SNP [dm6]	C	A	4.161e^-4	0.766	UTR_5_PRIME CG12439 INTRON CG12439
3L	11431014	3L_11431014_SNP [dm3] 3L_11437914_SNP [dm6]	C	G	4.161e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	15688430	2R_15688430_SNP [dm3] 2R_19800925_SNP [dm6]	G	A	4.167e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6301903	3L_6301903_SNP [dm3] 3L_6308803_SNP [dm6]	T	C	4.175e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	16747254	X_16747254_SNP [dm3] X_16853221_SNP [dm6]	C	A	4.187e^-4	0.766	START_GAINED CG13003 UTR_5_PRIME CG13003 INTRON CG13003
3R	26762054	3R_26762054_SNP [dm3] 3R_30936332_SNP [dm6]	T	G	4.190e^-4	0.766	NON_SYNONYMOUS_CODING CG15549 DOWNSTREAM CG15550	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5864750	2L_5864750_SNP [dm3] 2L_5864750_SNP [dm6]	G	T	4.191e^-4	0.766	INTRON rau	TF binding site BDTNP1_TFBS_twi
3L	3812082	3L_3812082_SNP [dm3] 3L_3812082_SNP [dm6]	G	C	4.199e^-4	0.766	NON_SYNONYMOUS_CODING CG12006 UPSTREAM CG32263	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17440905	X_17440905_SNP [dm3] X_17546872_SNP [dm6]	A	C	4.209e^-4	0.766	INTRON CG43658
3R	9436839	3R_9436839_SNP [dm3] 3R_13611117_SNP [dm6]	G	T	4.210e^-4	0.766	DOWNSTREAM CG9757 INTERGENIC
2L	13240434	2L_13240434_SNP [dm3] 2L_13240434_SNP [dm6]	T	C	4.211e^-4	0.766	SYNONYMOUS_CODING CG5945	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.266e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1617 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	7886215	2R_7886215_SNP [dm3] 2R_11998710_SNP [dm6]	C	A	1.733e^-6	0.937	INTERGENIC
3L	5785371	3L_5785371_SNP [dm3] 3L_5792271_SNP [dm6]	G	C	1.976e^-6	0.937	SYNONYMOUS_CODING Bre1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12965609	3L_12965609_SNP [dm3] 3L_12972509_SNP [dm6]	A	T	2.585e^-6	0.937	UTR_5_PRIME CG10749 UPSTREAM CG10748
3R	24437651	3R_24437651_SNP [dm3] 3R_28611929_SNP [dm6]	G	A	2.917e^-6	0.937	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7886263	2R_7886263_SNP [dm3] 2R_11998758_SNP [dm6]	T	G	3.868e^-6	0.937	INTERGENIC
2R	17513715	2R_17513715_SNP [dm3] 2R_21626210_SNP [dm6]	T	G	4.547e^-6	0.937	SYNONYMOUS_CODING mahj	TF binding site mE1_TFBS_sens
3L	5636411	3L_5636411_SNP [dm3] 3L_5643311_SNP [dm6]	A	G	5.104e^-6	0.937	UPSTREAM Blimp-1 INTRON Blimp-1
3L	870068	3L_870068_SNP [dm3] 3L_870068_SNP [dm6]	G	T	5.907e^-6	0.937	SYNONYMOUS_CODING CG12502	TF binding site mE1_TFBS_chinmo
2R	7886273	2R_7886273_DEL [dm3] 2R_11998768_DEL [dm6]	TT	T	6.018e^-6	0.937	INTERGENIC
2L	13030083	2L_13030083_SNP [dm3] 2L_13030083_SNP [dm6]	T	C	6.038e^-6	0.937	SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16973783	2R_16973783_SNP [dm3] 2R_21086278_SNP [dm6]	C	T	6.078e^-6	0.937	SYNONYMOUS_CODING Treh	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	7886412	2R_7886412_SNP [dm3] 2R_11998907_SNP [dm6]	A	G	6.906e^-6	0.937	INTERGENIC
3R	24438412	3R_24438412_SNP [dm3] 3R_28612690_SNP [dm6]	A	G	6.958e^-6	0.937	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	24437366	3R_24437366_SNP [dm3] 3R_28611644_SNP [dm6]	G	A	8.184e^-6	0.937	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7886370	2R_7886370_SNP [dm3] 2R_11998865_SNP [dm6]	A	G	8.227e^-6	0.937	INTERGENIC
X	11849482	X_11849482_SNP [dm3] X_11955449_SNP [dm6]	T	C	8.991e^-6	0.937	INTRON cac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24438278	3R_24438278_SNP [dm3] 3R_28612556_SNP [dm6]	G	C	1.000e^-5	0.937	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24437627	3R_24437627_SNP [dm3] 3R_28611905_SNP [dm6]	A	G	1.027e^-5	0.937	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20600483	2L_20600483_SNP [dm3] 2L_20600483_SNP [dm6]	G	C	1.031e^-5	0.937	INTRON CR44909	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16929627	3L_16929627_SNP [dm3] 3L_16936527_SNP [dm6]	G	A	1.099e^-5	0.937	UPSTREAM CG11905 INTERGENIC
2L	20590834	2L_20590834_SNP [dm3] 2L_20590834_SNP [dm6]	C	A	1.104e^-5	0.937	INTRON CR44909
2L	20593927	2L_20593927_SNP [dm3] 2L_20593927_SNP [dm6]	C	A	1.129e^-5	0.937	INTRON CR44909
3R	24438416	3R_24438416_SNP [dm3] 3R_28612694_SNP [dm6]	G	A	1.228e^-5	0.937	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	5636308	3L_5636308_SNP [dm3] 3L_5643208_SNP [dm6]	A	C	1.249e^-5	0.937	UPSTREAM Blimp-1 INTRON Blimp-1
2R	7886265	2R_7886265_SNP [dm3] 2R_11998760_SNP [dm6]	A	T	1.249e^-5	0.937	INTERGENIC
3R	24438275	3R_24438275_SNP [dm3] 3R_28612553_SNP [dm6]	T	C	1.305e^-5	0.941	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12025748	2R_12025748_SNP [dm3] 2R_16138243_SNP [dm6]	T	A	1.404e^-5	0.975	UPSTREAM Got1 DOWNSTREAM spin INTERGENIC
2L	3737240	2L_3737240_SNP [dm3] 2L_3737240_SNP [dm6]	A	G	1.504e^-5	1	INTRON CG10019
2R	7886438	2R_7886438_DEL [dm3] 2R_11998933_DEL [dm6]	TAAG	T	1.604e^-5	1	INTERGENIC
2R	7886430	2R_7886430_INS [dm3] 2R_11998925_INS [dm6]	T	TCAAATGGTAAGATT...	1.645e^-5	1	INTERGENIC
3R	24234125	3R_24234125_SNP [dm3] 3R_28408403_SNP [dm6]	C	T	1.852e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14015777	3R_14015777_SNP [dm3] 3R_18190055_SNP [dm6]	G	T	2.131e^-5	1	SYNONYMOUS_CODING MED17	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9607936	2R_9607936_SNP [dm3] 2R_13720431_SNP [dm6]	A	G	2.152e^-5	1	INTRON fas
2R	12498276	2R_12498276_SNP [dm3] 2R_16610771_SNP [dm6]	G	A	2.250e^-5	1	INTRON CG5065
3L	5636307	3L_5636307_SNP [dm3] 3L_5643207_SNP [dm6]	T	A	2.263e^-5	1	UPSTREAM Blimp-1 INTRON Blimp-1
2R	7886411	2R_7886411_SNP [dm3] 2R_11998906_SNP [dm6]	A	G	2.338e^-5	1	INTERGENIC
X	5693481	X_5693481_SNP [dm3] X_5799448_SNP [dm6]	T	C	2.549e^-5	1	INTERGENIC
3L	4061172	3L_4061172_SNP [dm3] 3L_4061172_SNP [dm6]	A	G	2.694e^-5	1	SYNONYMOUS_CODING CG18869
3L	10421315	3L_10421315_SNP [dm3] 3L_10428215_SNP [dm6]	C	A	2.860e^-5	1	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	7886396	2R_7886396_SNP [dm3] 2R_11998891_SNP [dm6]	A	G	2.926e^-5	1	INTERGENIC
2R	11039144	2R_11039144_SNP [dm3] 2R_15151639_SNP [dm6]	T	C	3.044e^-5	1	INTERGENIC
3L	9322340	3L_9322340_SNP [dm3] 3L_9329240_SNP [dm6]	G	T	3.063e^-5	1	INTERGENIC
2R	15042767	2R_15042767_SNP [dm3] 2R_19155262_SNP [dm6]	G	C	3.094e^-5	1	UTR_5_PRIME ena INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	20601780	2L_20601780_SNP [dm3] 2L_20601780_SNP [dm6]	G	A	3.112e^-5	1	INTRON CR44909	TF binding site mE1_TFBS_HSA
3L	14447753	3L_14447753_SNP [dm3] 3L_14454653_SNP [dm6]	G	A	3.256e^-5	1	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24438002	3R_24438002_SNP [dm3] 3R_28612280_SNP [dm6]	C	T	3.333e^-5	1	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16973462	2R_16973462_SNP [dm3] 2R_21085957_SNP [dm6]	C	T	3.371e^-5	1	SYNONYMOUS_CODING Treh	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5536927	3R_5536927_SNP [dm3] 3R_9711205_SNP [dm6]	T	A	3.378e^-5	1	UTR_5_PRIME dmt UPSTREAM trbd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	24445804	3R_24445804_SNP [dm3] 3R_28620082_SNP [dm6]	C	T	3.459e^-5	1	INTRON CG10011
2L	9378776	2L_9378776_SNP [dm3] 2L_9378776_SNP [dm6]	T	A	3.480e^-5	1	INTRON Shawl
2L	11253343	2L_11253343_SNP [dm3] 2L_11253343_SNP [dm6]	G	C	3.648e^-5	1	INTRON ab
3L	5316334	3L_5316334_SNP [dm3] 3L_5323234_SNP [dm6]	A	G	3.651e^-5	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14430926	3L_14430926_SNP [dm3] 3L_14437826_SNP [dm6]	C	T	3.703e^-5	1	INTRON bbg
2L	6903387	2L_6903387_SNP [dm3] 2L_6903387_SNP [dm6]	A	G	3.737e^-5	1	INTRON Nlg2
3L	14943517	3L_14943517_SNP [dm3] 3L_14950417_SNP [dm6]	C	T	3.788e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	14437014	3L_14437014_SNP [dm3] 3L_14443914_SNP [dm6]	G	T	3.868e^-5	1	INTRON bbg
3R	2257879	3R_2257879_INS [dm3] 3R_6432157_INS [dm6]	C	CGTTC	4.048e^-5	1	INTRON gpp
3L	22127401	3L_22127401_SNP [dm3] 3L_22134301_SNP [dm6]	G	A	4.146e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	10177355	3L_10177355_SNP [dm3] 3L_10184255_SNP [dm6]	T	C	4.302e^-5	1	INTRON dpr10
2L	7297653	2L_7297653_DEL [dm3] 2L_7297653_DEL [dm6]	CA	C	4.360e^-5	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
2L	3714650	2L_3714650_SNP [dm3] 2L_3714650_SNP [dm6]	C	A	4.412e^-5	1	SYNONYMOUS_CODING CG2818 UTR_5_PRIME CG2818	TF binding site mE1_TFBS_sens
3R	14015726	3R_14015726_SNP [dm3] 3R_18190004_SNP [dm6]	C	T	4.437e^-5	1	SYNONYMOUS_CODING MED17	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24437711	3R_24437711_SNP [dm3] 3R_28611989_SNP [dm6]	C	G	4.460e^-5	1	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7802219	2R_7802219_SNP [dm3] 2R_11914714_SNP [dm6]	A	G	4.508e^-5	1	INTERGENIC
2R	2755004	2R_2755004_SNP [dm3] 2R_6867499_SNP [dm6]	C	T	4.699e^-5	1	UTR_5_PRIME coro UPSTREAM coro INTRON coro
X	16548649	X_16548649_SNP [dm3] X_16654616_SNP [dm6]	C	G	4.840e^-5	1	SYNONYMOUS_CODING CG9723 UPSTREAM r	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_sens
3R	15014561	3R_15014561_SNP [dm3] 3R_19188839_SNP [dm6]	G	T	4.852e^-5	1	INTRON CG31475
3L	9322308	3L_9322308_SNP [dm3] 3L_9329208_SNP [dm6]	T	C	4.859e^-5	1	INTERGENIC
3R	24234088	3R_24234088_SNP [dm3] 3R_28408366_SNP [dm6]	T	C	4.973e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	7886336	2R_7886336_SNP [dm3] 2R_11998831_SNP [dm6]	G	A	5.089e^-5	1	INTERGENIC
2L	3737258	2L_3737258_SNP [dm3] 2L_3737258_SNP [dm6]	C	T	5.112e^-5	1	INTRON CG10019
3R	15124424	3R_15124424_SNP [dm3] 3R_19298702_SNP [dm6]	T	C	5.164e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	20051894	2L_20051894_SNP [dm3] 2L_20051894_SNP [dm6]	A	C	5.287e^-5	1	INTRON sNPF
3L	11430803	3L_11430803_SNP [dm3] 3L_11437703_SNP [dm6]	A	T	5.296e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14500786	3R_14500786_INS [dm3] 3R_18675064_INS [dm6]	C	CAGATAA	5.481e^-5	1	UTR_3_PRIME CG7705 DOWNSTREAM CG7702	TF binding site mE1_TFBS_cad
2R	17740809	2R_17740809_DEL [dm3] 2R_21853304_DEL [dm6]	CC	C	5.547e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	24437749	3R_24437749_SNP [dm3] 3R_28612027_SNP [dm6]	A	G	5.699e^-5	1	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8173556	2R_8173556_SNP [dm3] 2R_12286051_SNP [dm6]	A	G	5.741e^-5	1	UTR_5_PRIME CG42700 INTRON CG42700
2R	7937544	2R_7937544_SNP [dm3] 2R_12050039_SNP [dm6]	T	A	5.744e^-5	1	UTR_3_PRIME Drep-1 DOWNSTREAM CG30039
X	4509620	X_4509620_SNP [dm3] X_4615587_SNP [dm6]	A	T	5.769e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7886371	2R_7886371_SNP [dm3] 2R_11998866_SNP [dm6]	A	G	5.838e^-5	1	INTERGENIC
X	18330142	X_18330142_SNP [dm3] X_18436109_SNP [dm6]	T	C	5.838e^-5	1	SYNONYMOUS_CODING CG32548	TF binding site mE1_TFBS_chinmo
2R	5009711	2R_5009711_SNP [dm3] 2R_9122206_SNP [dm6]	T	A	5.949e^-5	1	UTR_5_PRIME GstE13 UPSTREAM GstE13 DOWNSTREAM Su_var_2-10
X	4843663	X_4843663_SNP [dm3] X_4949630_SNP [dm6]	A	G	6.013e^-5	1	SYNONYMOUS_CODING Ptp4E	TF binding site mE1_TFBS_cad
2R	17508185	2R_17508185_SNP [dm3] 2R_21620680_SNP [dm6]	G	A	6.238e^-5	1	SYNONYMOUS_CODING PTP-ER	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13158108	2R_13158108_SNP [dm3] 2R_17270603_SNP [dm6]	A	T	6.324e^-5	1	INTRON mbl
3L	14430717	3L_14430717_SNP [dm3] 3L_14437617_SNP [dm6]	A	T	6.407e^-5	1	INTRON bbg
3R	9711748	3R_9711748_SNP [dm3] 3R_13886026_SNP [dm6]	A	G	6.476e^-5	1	INTERGENIC
3R	21646528	3R_21646528_SNP [dm3] 3R_25820806_SNP [dm6]	C	G	6.587e^-5	1	INTERGENIC
2R	17416903	2R_17416903_SNP [dm3] 2R_21529398_SNP [dm6]	T	G	6.610e^-5	1	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5223546	3L_5223546_SNP [dm3] 3L_5230446_SNP [dm6]	G	A	6.718e^-5	1	INTRON shep
2R	15042766	2R_15042766_SNP [dm3] 2R_19155261_SNP [dm6]	T	A	6.768e^-5	1	UTR_5_PRIME ena INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	9545841	3L_9545841_SNP [dm3] 3L_9552741_SNP [dm6]	T	C	6.777e^-5	1	INTRON CG42673
3R	24245569	3R_24245569_SNP [dm3] 3R_28419847_SNP [dm6]	C	T	6.797e^-5	1	INTRON beat-VI
3L	3814853	3L_3814853_SNP [dm3] 3L_3814853_SNP [dm6]	C	T	6.804e^-5	1	DOWNSTREAM CG12006 & 2 others INTRON Scsalpha EXON CR43932	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	26964043	3R_26964043_SNP [dm3] 3R_31138321_SNP [dm6]	G	A	6.915e^-5	1	INTRON Gycbeta100B
X	18330140	X_18330140_SNP [dm3] X_18436107_SNP [dm6]	C	T	7.057e^-5	1	NON_SYNONYMOUS_CODING CG32548	TF binding site mE1_TFBS_chinmo
2L	20037817	2L_20037817_DEL [dm3] 2L_20037817_DEL [dm6]	AAA	A	7.133e^-5	1	INTRON sNPF
3R	14306857	3R_14306857_INS [dm3] 3R_18481135_INS [dm6]	A	ACACA	7.135e^-5	1	UPSTREAM fru INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4140366	2L_4140366_SNP [dm3] 2L_4140366_SNP [dm6]	A	C	7.253e^-5	1	INTERGENIC
2L	2327756	2L_2327756_SNP [dm3] 2L_2327756_SNP [dm6]	T	G	7.302e^-5	1	INTRON CG9967 & 1 other
3R	24688097	3R_24688097_SNP [dm3] 3R_28862375_SNP [dm6]	T	C	7.326e^-5	1	INTRON spg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	7886546	2R_7886546_SNP [dm3] 2R_11999041_SNP [dm6]	C	T	7.348e^-5	1	INTERGENIC
X	18471895	X_18471895_SNP [dm3] X_18577862_SNP [dm6]	C	T	7.358e^-5	1	INTERGENIC
X	18453396	X_18453396_SNP [dm3] X_18559363_SNP [dm6]	G	A	7.547e^-5	1	INTRON Bx
3L	7309826	3L_7309826_SNP [dm3] 3L_7316726_SNP [dm6]	A	T	7.630e^-5	1	INTERGENIC
2R	12975158	2R_12975158_SNP [dm3] 2R_17087653_SNP [dm6]	A	G	7.631e^-5	1	UPSTREAM CG30460 DOWNSTREAM Sply INTERGENIC
3L	14446949	3L_14446949_SNP [dm3] 3L_14453849_SNP [dm6]	C	T	7.646e^-5	1	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18330144	X_18330144_SNP [dm3] X_18436111_SNP [dm6]	C	T	7.692e^-5	1	NON_SYNONYMOUS_CODING CG32548	TF binding site mE1_TFBS_chinmo
2R	9671583	2R_9671583_SNP [dm3] 2R_13784078_SNP [dm6]	C	A	7.723e^-5	1	INTRON Cpr50Ca EXON CR43810
3L	14446889	3L_14446889_DEL [dm3] 3L_14453789_DEL [dm6]	TCGAATTCGCT...	T	7.728e^-5	1	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14446912	3L_14446912_SNP [dm3] 3L_14453812_SNP [dm6]	T	A	7.728e^-5	1	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14446916	3L_14446916_MNP [dm3] 3L_14453816_MNP [dm6]	TAT	GTA	7.728e^-5	1	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20595155	2L_20595155_DEL [dm3] 2L_20595155_DEL [dm6]	GG	G	7.909e^-5	1	INTRON CR44909
3L	14431041	3L_14431041_SNP [dm3] 3L_14437941_SNP [dm6]	T	A	8.016e^-5	1	INTRON bbg	TF binding site BDTNP1_TFBS_hb
2L	20047142	2L_20047142_SNP [dm3] 2L_20047142_SNP [dm6]	T	G	8.029e^-5	1	INTRON sNPF
3R	14015870	3R_14015870_SNP [dm3] 3R_18190148_SNP [dm6]	G	A	8.036e^-5	1	SYNONYMOUS_CODING MED17	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	9314767	X_9314767_SNP [dm3] X_9420734_SNP [dm6]	G	T	8.076e^-5	1	INTRON mgl
3L	5611855	3L_5611855_SNP [dm3] 3L_5618755_SNP [dm6]	A	G	8.080e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18330139	X_18330139_SNP [dm3] X_18436106_SNP [dm6]	A	G	8.142e^-5	1	SYNONYMOUS_CODING CG32548	TF binding site mE1_TFBS_chinmo
X	4509621	X_4509621_SNP [dm3] X_4615588_SNP [dm6]	T	A	8.209e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20600472	2L_20600472_SNP [dm3] 2L_20600472_SNP [dm6]	A	C	8.268e^-5	1	INTRON CR44909	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16122357	2R_16122357_SNP [dm3] 2R_20234852_SNP [dm6]	A	G	8.270e^-5	1	UTR_3_PRIME CG11044 UPSTREAM CG44624 & 1 other
2L	9654862	2L_9654862_SNP [dm3] 2L_9654862_SNP [dm6]	C	T	8.341e^-5	1	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21300547	2L_21300547_SNP [dm3] 2L_21300547_SNP [dm6]	C	T	8.633e^-5	1	INTRON Mio
3L	15073690	3L_15073690_INS [dm3] 3L_15080590_INS [dm6]	A	ATTTA	8.695e^-5	1	INTRON cp309	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	21670113	3R_21670113_SNP [dm3] 3R_25844391_SNP [dm6]	G	C	8.732e^-5	1	DOWNSTREAM CR45653 INTERGENIC
3L	12475514	3L_12475514_SNP [dm3] 3L_12482414_SNP [dm6]	T	A	8.753e^-5	1	UPSTREAM CG33725 INTRON CG10663
2L	15465534	2L_15465534_DEL [dm3] 2L_15465534_DEL [dm6]	AA	A	8.779e^-5	1	INTERGENIC
3L	7860300	3L_7860300_SNP [dm3] 3L_7867200_SNP [dm6]	G	T	8.829e^-5	1	INTRON Pdp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8747831	X_8747831_SNP [dm3] X_8853798_SNP [dm6]	G	T	8.877e^-5	1	UTR_5_PRIME CG12075 INTRON CG12075
2R	15688430	2R_15688430_SNP [dm3] 2R_19800925_SNP [dm6]	G	A	8.903e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20625117	2L_20625117_SNP [dm3] 2L_20625117_SNP [dm6]	G	T	9.100e^-5	1	INTRON CR44909
2R	15690575	2R_15690575_SNP [dm3] 2R_19803070_SNP [dm6]	C	T	9.131e^-5	1	DOWNSTREAM tRNA:K2:56EF INTERGENIC
2R	12136512	2R_12136512_SNP [dm3] 2R_16249007_SNP [dm6]	G	T	9.134e^-5	1	INTRON CngA
3R	24438038	3R_24438038_SNP [dm3] 3R_28612316_SNP [dm6]	A	T	9.138e^-5	1	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24437480	3R_24437480_SNP [dm3] 3R_28611758_SNP [dm6]	G	A	9.259e^-5	1	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8173613	2R_8173613_SNP [dm3] 2R_12286108_SNP [dm6]	G	A	9.340e^-5	1	SYNONYMOUS_CODING CG42700 INTRON CG42700
3L	10393057	3L_10393057_SNP [dm3] 3L_10399957_SNP [dm6]	A	G	9.506e^-5	1	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10421308	3L_10421308_SNP [dm3] 3L_10428208_SNP [dm6]	A	G	9.524e^-5	1	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	19158665	2R_19158665_SNP [dm3] 2R_23271142_SNP [dm6]	G	C	9.565e^-5	1	DOWNSTREAM ord & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14447744	3L_14447744_SNP [dm3] 3L_14454644_SNP [dm6]	G	A	9.658e^-5	1	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5866560	2L_5866560_SNP [dm3] 2L_5866560_SNP [dm6]	C	G	9.948e^-5	1	INTRON rau	TF binding site BDTNP1_TFBS_da
2L	7081421	2L_7081421_SNP [dm3] 2L_7081421_SNP [dm6]	G	A	9.959e^-5	1	INTRON Pvf2
3L	5611852	3L_5611852_SNP [dm3] 3L_5618752_SNP [dm6]	G	T	9.980e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14113938	2R_14113938_SNP [dm3] 2R_18226433_SNP [dm6]	A	T	1.009e^-4	1	UPSTREAM CR45310 INTERGENIC
3R	19070234	3R_19070234_SNP [dm3] 3R_23244512_SNP [dm6]	A	G	1.010e^-4	1	INTRON CG4467
X	11155329	X_11155329_SNP [dm3] X_11261296_SNP [dm6]	T	C	1.018e^-4	1	INTRON CG44422
3L	13261903	3L_13261903_SNP [dm3] 3L_13268803_SNP [dm6]	T	C	1.021e^-4	1	INTRON caps
2R	20207687	2R_20207687_SNP [dm3] 2R_24320164_SNP [dm6]	T	G	1.024e^-4	1	INTERGENIC
3R	23638453	3R_23638453_SNP [dm3] 3R_27812731_SNP [dm6]	C	T	1.025e^-4	1	INTRON CG34353
2L	9654879	2L_9654879_SNP [dm3] 2L_9654879_SNP [dm6]	C	A	1.028e^-4	1	NON_SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19535457	3R_19535457_SNP [dm3] 3R_23709735_SNP [dm6]	A	T	1.048e^-4	1	UPSTREAM CG10301 INTERGENIC
2L	17259632	2L_17259632_SNP [dm3] 2L_17259632_SNP [dm6]	G	C	1.051e^-4	1	INTRON beat-IIIc
3L	22127365	3L_22127365_SNP [dm3] 3L_22134265_SNP [dm6]	C	T	1.067e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	6352974	2R_6352974_DEL [dm3] 2R_10465469_DEL [dm6]	AA	A	1.069e^-4	1	UTR_3_PRIME Galphao DOWNSTREAM Caf1-105	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1345699	2R_1345699_SNP [dm3] 2R_5458194_SNP [dm6]	A	G	1.069e^-4	1	INTERGENIC	transposable element FlyBase
2R	10382447	2R_10382447_SNP [dm3] 2R_14494942_SNP [dm6]	C	T	1.087e^-4	1	INTRON L
3L	10177371	3L_10177371_SNP [dm3] 3L_10184271_SNP [dm6]	A	T	1.089e^-4	1	INTRON dpr10
2L	20053996	2L_20053996_SNP [dm3] 2L_20053996_SNP [dm6]	A	T	1.095e^-4	1	INTRON sNPF
2R	15689153	2R_15689153_DEL [dm3] 2R_19801648_DEL [dm6]	TTATTCT	C	1.096e^-4	1	UPSTREAM tRNA:K2:56EF INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5901935	2L_5901935_SNP [dm3] 2L_5901935_SNP [dm6]	C	T	1.100e^-4	1	INTERGENIC
2L	7295211	2L_7295211_SNP [dm3] 2L_7295211_SNP [dm6]	A	T	1.100e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7883760	2R_7883760_SNP [dm3] 2R_11996255_SNP [dm6]	G	T	1.106e^-4	1	UPSTREAM CR45319 DOWNSTREAM CR45318 INTERGENIC
3L	1897726	3L_1897726_SNP [dm3] 3L_1897726_SNP [dm6]	T	G	1.115e^-4	1	UPSTREAM CG1887 INTRON CG1887	TF binding site BDTNP1_TFBS_prd
3R	16656706	3R_16656706_SNP [dm3] 3R_20830984_SNP [dm6]	G	A	1.120e^-4	1	UPSTREAM CG31223 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	16541867	2R_16541867_SNP [dm3] 2R_20654362_SNP [dm6]	G	A	1.123e^-4	1	INTRON Lrt & 1 other
2L	21325754	2L_21325754_SNP [dm3] 2L_21325754_SNP [dm6]	G	A	1.124e^-4	1	UPSTREAM CR42696 INTERGENIC
3L	14446974	3L_14446974_SNP [dm3] 3L_14453874_SNP [dm6]	A	G	1.125e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10262151	3R_10262151_SNP [dm3] 3R_14436429_SNP [dm6]	G	A	1.132e^-4	1	INTRON cv-c
3L	14446872	3L_14446872_SNP [dm3] 3L_14453772_SNP [dm6]	A	G	1.144e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5554029	X_5554029_SNP [dm3] X_5659996_SNP [dm6]	G	A	1.151e^-4	1	INTRON CG42265
2L	21325780	2L_21325780_SNP [dm3] 2L_21325780_SNP [dm6]	T	G	1.155e^-4	1	UPSTREAM CR42696 INTERGENIC
2R	16964453	2R_16964453_SNP [dm3] 2R_21076948_SNP [dm6]	A	G	1.156e^-4	1	UTR_5_PRIME Treh	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	21646470	3R_21646470_SNP [dm3] 3R_25820748_SNP [dm6]	A	G	1.161e^-4	1	INTERGENIC
2L	22025761	2L_22025761_SNP [dm3] 2L_22025761_SNP [dm6]	T	A	1.165e^-4	1	DOWNSTREAM tio INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	10382442	2R_10382442_DEL [dm3] 2R_14494937_DEL [dm6]	CCAG	C	1.167e^-4	1	INTRON L
3R	24437897	3R_24437897_SNP [dm3] 3R_28612175_SNP [dm6]	T	G	1.200e^-4	1	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4226349	X_4226349_INS [dm3] X_4332316_INS [dm6]	G	GCGGCAGCTGAAGCAGA...	1.223e^-4	1	INTRON norpA
3L	5611866	3L_5611866_SNP [dm3] 3L_5618766_SNP [dm6]	T	A	1.237e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15690713	2R_15690713_SNP [dm3] 2R_19803208_SNP [dm6]	C	G	1.242e^-4	1	DOWNSTREAM tRNA:K2:56EF INTERGENIC
2L	3737297	2L_3737297_SNP [dm3] 2L_3737297_SNP [dm6]	C	T	1.258e^-4	1	INTRON CG10019
3R	24230669	3R_24230669_SNP [dm3] 3R_28404947_SNP [dm6]	G	A	1.259e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18133142	3L_18133142_SNP [dm3] 3L_18140042_SNP [dm6]	C	T	1.260e^-4	1	INTRON gk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	12294261	2L_12294261_SNP [dm3] 2L_12294261_SNP [dm6]	A	G	1.264e^-4	1	INTRON aret
2R	13909829	2R_13909829_SNP [dm3] 2R_18022324_SNP [dm6]	G	A	1.267e^-4	1	UTR_3_PRIME CG10910	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	18181291	3R_18181291_SNP [dm3] 3R_22355569_SNP [dm6]	T	C	1.292e^-4	1	INTRON rdhB	TF binding site mE1_TFBS_cad
3L	14431005	3L_14431005_SNP [dm3] 3L_14437905_SNP [dm6]	G	A	1.306e^-4	1	INTRON bbg
X	11513173	X_11513173_SNP [dm3] X_11619140_SNP [dm6]	C	A	1.314e^-4	1	UTR_3_PRIME Met	TF binding site mE1_TFBS_cad
3L	1390461	3L_1390461_SNP [dm3] 3L_1390461_SNP [dm6]	A	T	1.327e^-4	1	INTRON Ptp61F	TF binding site mE1_TFBS_cad
2R	7886547	2R_7886547_SNP [dm3] 2R_11999042_SNP [dm6]	T	A	1.339e^-4	1	INTERGENIC
2R	17416902	2R_17416902_SNP [dm3] 2R_21529397_SNP [dm6]	G	A	1.341e^-4	1	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7886608	2R_7886608_SNP [dm3] 2R_11999103_SNP [dm6]	G	A	1.342e^-4	1	INTERGENIC
3L	2365643	3L_2365643_SNP [dm3] 3L_2365643_SNP [dm6]	C	G	1.344e^-4	1	INTERGENIC
2L	11254046	2L_11254046_SNP [dm3] 2L_11254046_SNP [dm6]	A	G	1.346e^-4	1	INTRON ab
2L	1688113	2L_1688113_SNP [dm3] 2L_1688113_SNP [dm6]	G	A	1.350e^-4	1	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24568634	3R_24568634_SNP [dm3] 3R_28742912_SNP [dm6]	T	G	1.352e^-4	1	INTRON AstA-R2
2R	7886613	2R_7886613_DEL [dm3] 2R_11999108_DEL [dm6]	TGTCCTTTGTTTTTGTTGCT...	T	1.353e^-4	1	INTERGENIC
3L	6101819	3L_6101819_SNP [dm3] 3L_6108719_SNP [dm6]	C	G	1.353e^-4	1	INTRON Ets65A
X	13197029	X_13197029_INS [dm3] X_13302996_INS [dm6]	T	TTATCAT	1.355e^-4	1	UPSTREAM CG1764 & 1 other INTERGENIC
2R	13907760	2R_13907760_SNP [dm3] 2R_18020255_SNP [dm6]	T	C	1.368e^-4	1	UPSTREAM CG10910 DOWNSTREAM CG5084 INTERGENIC
3R	25528386	3R_25528386_SNP [dm3] 3R_29702664_SNP [dm6]	C	G	1.369e^-4	1	INTERGENIC
3L	14446941	3L_14446941_SNP [dm3] 3L_14453841_SNP [dm6]	A	T	1.377e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16482244	2R_16482244_SNP [dm3] 2R_20594739_SNP [dm6]	G	T	1.381e^-4	1	INTRON bl
3R	9007861	3R_9007861_SNP [dm3] 3R_13182139_SNP [dm6]	A	G	1.381e^-4	1	UTR_3_PRIME CG8138
X	12059731	X_12059731_SNP [dm3] X_12165698_SNP [dm6]	A	C	1.383e^-4	1	INTRON Ten-a
3L	9322313	3L_9322313_SNP [dm3] 3L_9329213_SNP [dm6]	G	A	1.398e^-4	1	INTERGENIC
2R	2950302	2R_2950302_SNP [dm3] 2R_7062797_SNP [dm6]	T	G	1.400e^-4	1	INTRON Tsp42Eq	TF binding site mE1_TFBS_sens
3L	17922384	3L_17922384_SNP [dm3] 3L_17929284_SNP [dm6]	G	T	1.404e^-4	1	INTERGENIC
3L	10354775	3L_10354775_SNP [dm3] 3L_10361675_SNP [dm6]	A	C	1.406e^-4	1	EXON CR44327	TF binding site mE1_TFBS_cad
3L	8018609	3L_8018609_SNP [dm3] 3L_8025509_SNP [dm6]	C	T	1.408e^-4	1	INTRON nmo
3L	14437847	3L_14437847_SNP [dm3] 3L_14444747_SNP [dm6]	T	C	1.443e^-4	1	INTRON bbg	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	16488910	3R_16488910_SNP [dm3] 3R_20663188_SNP [dm6]	C	G	1.450e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	13075060	3L_13075060_SNP [dm3] 3L_13081960_SNP [dm6]	T	C	1.450e^-4	1	EXON CR43652	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	24547245	3R_24547245_SNP [dm3] 3R_28721523_SNP [dm6]	G	A	1.460e^-4	1	SYNONYMOUS_CODING htt	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	13074880	3L_13074880_SNP [dm3] 3L_13081780_SNP [dm6]	C	T	1.464e^-4	1	EXON CR43652	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	10050886	3R_10050886_SNP [dm3] 3R_14225164_SNP [dm6]	A	G	1.480e^-4	1	UTR_3_PRIME CG9631	TF binding site mE1_TFBS_cad
2R	20700564	2R_20700564_SNP [dm3] 2R_24813041_SNP [dm6]	G	A	1.483e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	12136518	2R_12136518_SNP [dm3] 2R_16249013_SNP [dm6]	T	C	1.484e^-4	1	INTRON CngA
2R	12136520	2R_12136520_SNP [dm3] 2R_16249015_SNP [dm6]	G	A	1.484e^-4	1	INTRON CngA
X	17819273	X_17819273_SNP [dm3] X_17925240_SNP [dm6]	A	T	1.485e^-4	1	UTR_3_PRIME Sh
3L	14446972	3L_14446972_SNP [dm3] 3L_14453872_SNP [dm6]	A	T	1.498e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21325721	2L_21325721_SNP [dm3] 2L_21325721_SNP [dm6]	C	A	1.502e^-4	1	UPSTREAM CR42696 INTERGENIC
2L	6213965	2L_6213965_SNP [dm3] 2L_6213965_SNP [dm6]	T	C	1.505e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	6292456	3L_6292456_SNP [dm3] 3L_6299356_SNP [dm6]	A	G	1.507e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24568571	3R_24568571_SNP [dm3] 3R_28742849_SNP [dm6]	G	C	1.515e^-4	1	INTRON AstA-R2
2L	1919656	2L_1919656_SNP [dm3] 2L_1919656_SNP [dm6]	G	A	1.518e^-4	1	INTRON CG7337
3R	16656717	3R_16656717_SNP [dm3] 3R_20830995_SNP [dm6]	T	A	1.532e^-4	1	UPSTREAM CG31223 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	14259948	3L_14259948_SNP [dm3] 3L_14266848_SNP [dm6]	G	T	1.537e^-4	1	INTERGENIC
X	7783161	X_7783161_DEL [dm3] X_7889128_DEL [dm6]	AA	A	1.544e^-4	1	UTR_3_PRIME Nek2 UPSTREAM CG10932	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15691048	2R_15691048_SNP [dm3] 2R_19803543_SNP [dm6]	T	C	1.546e^-4	1	DOWNSTREAM tRNA:K2:56EF INTERGENIC	TF binding site mE1_TFBS_Kr
2L	7522972	2L_7522972_SNP [dm3] 2L_7522972_SNP [dm6]	A	G	1.549e^-4	1	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14287937	3L_14287937_SNP [dm3] 3L_14294837_SNP [dm6]	G	C	1.550e^-4	1	INTRON fz
3R	19070230	3R_19070230_SNP [dm3] 3R_23244508_SNP [dm6]	G	A	1.554e^-4	1	INTRON CG4467
X	11155370	X_11155370_SNP [dm3] X_11261337_SNP [dm6]	G	A	1.556e^-4	1	INTRON CG44422
X	10596324	X_10596324_DEL [dm3] X_10702291_DEL [dm6]	TAT	T	1.565e^-4	1	INTRON X11Lbeta
3L	10177305	3L_10177305_SNP [dm3] 3L_10184205_SNP [dm6]	A	G	1.566e^-4	1	INTRON dpr10
2L	7899009	2L_7899009_SNP [dm3] 2L_7899009_SNP [dm6]	A	G	1.572e^-4	1	INTRON Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11572616	3L_11572616_SNP [dm3] 3L_11579516_SNP [dm6]	G	C	1.573e^-4	1	UPSTREAM CG33270 DOWNSTREAM CG43390 INTERGENIC
3R	4452062	3R_4452062_SNP [dm3] 3R_8626340_SNP [dm6]	G	C	1.576e^-4	1	SYNONYMOUS_CODING 5-HT2B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19204620	2R_19204620_SNP [dm3] 2R_23317097_SNP [dm6]	A	G	1.587e^-4	1	INTERGENIC
3L	8262452	3L_8262452_SNP [dm3] 3L_8269352_SNP [dm6]	A	C	1.587e^-4	1	INTRON Dscam4
3L	21836999	3L_21836999_SNP [dm3] 3L_21843899_SNP [dm6]	C	T	1.600e^-4	1	UPSTREAM mub INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11431043	3L_11431043_SNP [dm3] 3L_11437943_SNP [dm6]	T	C	1.608e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	18410903	3R_18410903_SNP [dm3] 3R_22585181_SNP [dm6]	T	C	1.627e^-4	1	SYNONYMOUS_CODING CG6937 UPSTREAM CG33107 DOWNSTREAM btn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	24687915	3R_24687915_DEL [dm3] 3R_28862193_DEL [dm6]	CTATATAT	C	1.628e^-4	1	INTRON spg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14447041	3L_14447041_SNP [dm3] 3L_14453941_SNP [dm6]	G	A	1.636e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24567993	3R_24567993_SNP [dm3] 3R_28742271_SNP [dm6]	C	A	1.642e^-4	1	INTRON AstA-R2
2L	21325541	2L_21325541_SNP [dm3] 2L_21325541_SNP [dm6]	A	G	1.643e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	10376141	3R_10376141_SNP [dm3] 3R_14550419_SNP [dm6]	A	C	1.647e^-4	1	INTRON Pde6
X	13784771	X_13784771_SNP [dm3] X_13890738_SNP [dm6]	C	G	1.651e^-4	1	INTRON mamo	TF binding site BDTNP1_TFBS_dl
2R	6487762	2R_6487762_SNP [dm3] 2R_10600257_SNP [dm6]	G	T	1.653e^-4	1	INTRON psq
2R	3667064	2R_3667064_SNP [dm3] 2R_7779559_SNP [dm6]	A	T	1.654e^-4	1	UTR_5_PRIME CG45093 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2L	11189341	2L_11189341_SNP [dm3] 2L_11189341_SNP [dm6]	G	T	1.654e^-4	1	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4638401	3L_4638401_SNP [dm3] 3L_4638401_SNP [dm6]	T	A	1.661e^-4	1	INTRON axo
2R	8411499	2R_8411499_SNP [dm3] 2R_12523994_SNP [dm6]	A	C	1.666e^-4	1	INTERGENIC
2L	11600601	2L_11600601_SNP [dm3] 2L_11600601_SNP [dm6]	A	G	1.670e^-4	1	INTRON kek2
3L	14287946	3L_14287946_SNP [dm3] 3L_14294846_SNP [dm6]	G	A	1.673e^-4	1	INTRON fz
3L	16907293	3L_16907293_SNP [dm3] 3L_16914193_SNP [dm6]	T	G	1.679e^-4	1	INTRON Lmpt
3L	4060527	3L_4060527_SNP [dm3] 3L_4060527_SNP [dm6]	T	G	1.680e^-4	1	SYNONYMOUS_CODING CG18869 DOWNSTREAM CG1136	TF binding site mE1_TFBS_sens
3L	2365650	3L_2365650_SNP [dm3] 3L_2365650_SNP [dm6]	C	A	1.686e^-4	1	INTERGENIC
2R	6354560	2R_6354560_SNP [dm3] 2R_10467055_SNP [dm6]	C	T	1.688e^-4	1	SYNONYMOUS_CODING Caf1-105	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7887190	2R_7887190_SNP [dm3] 2R_11999685_SNP [dm6]	C	T	1.692e^-4	1	INTERGENIC
2R	7886314	2R_7886314_SNP [dm3] 2R_11998809_SNP [dm6]	A	C	1.692e^-4	1	INTERGENIC
3R	20613221	3R_20613221_DEL [dm3] 3R_24787499_DEL [dm6]	TG	T	1.717e^-4	1	UPSTREAM CG5805 & 1 other DOWNSTREAM CG13634 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8411121	2L_8411121_SNP [dm3] 2L_8411121_SNP [dm6]	A	G	1.717e^-4	1	SYNONYMOUS_CODING CG13397
2R	10874784	2R_10874784_SNP [dm3] 2R_14987279_SNP [dm6]	G	A	1.719e^-4	1	DOWNSTREAM CG7639 INTRON pcs	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2L	8808561	2L_8808561_DEL [dm3] 2L_8808561_DEL [dm6]	TGCAGG	T	1.730e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	19733730	2L_19733730_SNP [dm3] 2L_19733730_SNP [dm6]	C	T	1.741e^-4	1	SYNONYMOUS_CODING CG10462	TF binding site mE1_TFBS_sens
2R	9262078	2R_9262078_SNP [dm3] 2R_13374573_SNP [dm6]	C	A	1.743e^-4	1	INTERGENIC
3L	13261792	3L_13261792_SNP [dm3] 3L_13268692_SNP [dm6]	T	G	1.763e^-4	1	INTRON caps
2R	7886372	2R_7886372_SNP [dm3] 2R_11998867_SNP [dm6]	G	A	1.764e^-4	1	INTERGENIC
2L	6084954	2L_6084954_SNP [dm3] 2L_6084954_SNP [dm6]	C	A	1.767e^-4	1	INTRON Kr-h1
2L	4277441	2L_4277441_SNP [dm3] 2L_4277441_SNP [dm6]	A	C	1.777e^-4	1	DOWNSTREAM Art2 INTERGENIC
2L	1819505	2L_1819505_SNP [dm3] 2L_1819505_SNP [dm6]	A	G	1.777e^-4	1	INTERGENIC
2L	1819507	2L_1819507_SNP [dm3] 2L_1819507_SNP [dm6]	A	C	1.777e^-4	1	INTERGENIC
3L	14446959	3L_14446959_SNP [dm3] 3L_14453859_SNP [dm6]	C	G	1.778e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23277649	3R_23277649_SNP [dm3] 3R_27451927_SNP [dm6]	C	A	1.783e^-4	1	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	10777921	3L_10777921_SNP [dm3] 3L_10784821_SNP [dm6]	T	G	1.791e^-4	1	INTRON CR44544
2L	20589231	2L_20589231_SNP [dm3] 2L_20589231_SNP [dm6]	C	G	1.792e^-4	1	INTRON CR44909
2L	20625370	2L_20625370_SNP [dm3] 2L_20625370_SNP [dm6]	G	C	1.794e^-4	1	EXON CR44909
3R	4459333	3R_4459333_SNP [dm3] 3R_8633611_SNP [dm6]	T	G	1.837e^-4	1	DOWNSTREAM Or85e INTERGENIC
3R	26319022	3R_26319022_SNP [dm3] 3R_30493300_SNP [dm6]	T	A	1.853e^-4	1	INTRON PH4alphaMP	TF binding site mE1_TFBS_cad
3R	16657568	3R_16657568_SNP [dm3] 3R_20831846_SNP [dm6]	C	T	1.856e^-4	1	SYNONYMOUS_CODING CG31223 UPSTREAM Synd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	14446927	3L_14446927_SNP [dm3] 3L_14453827_SNP [dm6]	G	T	1.861e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2562566	2L_2562566_SNP [dm3] 2L_2562566_SNP [dm6]	A	C	1.863e^-4	1	UTR_3_PRIME Cyp309a1 DOWNSTREAM Cyp309a1
2R	7886368	2R_7886368_SNP [dm3] 2R_11998863_SNP [dm6]	A	T	1.864e^-4	1	INTERGENIC
3R	25957001	3R_25957001_SNP [dm3] 3R_30131279_SNP [dm6]	A	G	1.864e^-4	1	SYNONYMOUS_CODING CG31029	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8141922	3L_8141922_SNP [dm3] 3L_8148822_SNP [dm6]	C	A	1.864e^-4	1	INTRON CG13676
3L	13261826	3L_13261826_SNP [dm3] 3L_13268726_SNP [dm6]	T	G	1.887e^-4	1	INTRON caps
3R	24201357	3R_24201357_INS [dm3] 3R_28375635_INS [dm6]	T	GC	1.898e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11253354	2L_11253354_SNP [dm3] 2L_11253354_SNP [dm6]	C	G	1.906e^-4	1	INTRON ab
2L	2327753	2L_2327753_SNP [dm3] 2L_2327753_SNP [dm6]	A	T	1.908e^-4	1	INTRON CG9967 & 1 other
2R	15689205	2R_15689205_SNP [dm3] 2R_19801700_SNP [dm6]	G	T	1.910e^-4	1	UPSTREAM tRNA:K2:56EF INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14430742	3L_14430742_SNP [dm3] 3L_14437642_SNP [dm6]	C	T	1.911e^-4	1	INTRON bbg
3L	10999784	3L_10999784_SNP [dm3] 3L_11006684_SNP [dm6]	A	T	1.919e^-4	1	INTRON klu
2R	12527876	2R_12527876_SNP [dm3] 2R_16640371_SNP [dm6]	G	A	1.922e^-4	1	UPSTREAM Alk & 1 other INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_HSA
2L	1819570	2L_1819570_SNP [dm3] 2L_1819570_SNP [dm6]	G	T	1.928e^-4	1	INTERGENIC
3R	10446640	3R_10446640_SNP [dm3] 3R_14620918_SNP [dm6]	A	C	1.947e^-4	1	UTR_3_PRIME put
2R	2989481	2R_2989481_SNP [dm3] 2R_7101976_SNP [dm6]	G	A	1.950e^-4	1	INTRON esn
3L	1868734	3L_1868734_SNP [dm3] 3L_1868734_SNP [dm6]	A	G	1.951e^-4	1	UTR_3_PRIME CG12025 DOWNSTREAM CG12025
2L	7102874	2L_7102874_SNP [dm3] 2L_7102874_SNP [dm6]	C	G	1.961e^-4	1	INTRON Pvf3
3R	24547320	3R_24547320_SNP [dm3] 3R_28721598_SNP [dm6]	C	T	1.965e^-4	1	SYNONYMOUS_CODING htt	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	6111965	2L_6111965_SNP [dm3] 2L_6111965_SNP [dm6]	T	C	1.967e^-4	1	INTRON stai
2L	21325762	2L_21325762_SNP [dm3] 2L_21325762_SNP [dm6]	G	C	1.969e^-4	1	UPSTREAM CR42696 INTERGENIC
3L	12928853	3L_12928853_SNP [dm3] 3L_12935753_SNP [dm6]	C	T	1.971e^-4	1	INTERGENIC
2L	21325188	2L_21325188_SNP [dm3] 2L_21325188_SNP [dm6]	T	C	1.971e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
3R	23287278	3R_23287278_SNP [dm3] 3R_27461556_SNP [dm6]	T	A	1.972e^-4	1	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	21396143	2L_21396143_SNP [dm3] 2L_21396143_SNP [dm6]	C	A	1.982e^-4	1	INTERGENIC	transposable element FlyBase
2R	6557540	2R_6557540_SNP [dm3] 2R_10670035_SNP [dm6]	T	A	1.988e^-4	1	INTERGENIC
2L	4277440	2L_4277440_SNP [dm3] 2L_4277440_SNP [dm6]	A	T	1.989e^-4	1	DOWNSTREAM Art2 INTERGENIC
3L	9397315	3L_9397315_SNP [dm3] 3L_9404215_SNP [dm6]	T	A	1.990e^-4	1	UPSTREAM Cpr67B INTERGENIC
3R	25239890	3R_25239890_INS [dm3] 3R_29414168_INS [dm6]	C	CAACA	1.994e^-4	1	INTRON Ptp99A
X	11155430	X_11155430_SNP [dm3] X_11261397_SNP [dm6]	T	C	1.995e^-4	1	INTRON CG44422
X	11155424	X_11155424_SNP [dm3] X_11261391_SNP [dm6]	G	T	2.031e^-4	1	INTRON CG44422
2R	15689971	2R_15689971_SNP [dm3] 2R_19802466_SNP [dm6]	A	T	2.031e^-4	1	UPSTREAM tRNA:K2:56EF INTERGENIC
2L	3630581	2L_3630581_SNP [dm3] 2L_3630581_SNP [dm6]	G	A	2.041e^-4	1	INTRON for
X	7647023	X_7647023_SNP [dm3] X_7752990_SNP [dm6]	A	G	2.042e^-4	1	INTERGENIC
2R	5008117	2R_5008117_SNP [dm3] 2R_9120612_SNP [dm6]	T	C	2.053e^-4	1	UTR_3_PRIME Su_var_2-10 DOWNSTREAM Su_var_2-10 INTRON Su_var_2-10
2L	20600407	2L_20600407_SNP [dm3] 2L_20600407_SNP [dm6]	A	T	2.069e^-4	1	INTRON CR44909	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20680584	3L_20680584_INS [dm3] 3L_20687484_INS [dm6]	A	AGATGTCAACC...	2.071e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10399491	3L_10399491_SNP [dm3] 3L_10406391_SNP [dm6]	A	G	2.096e^-4	1	INTERGENIC
3L	14446982	3L_14446982_SNP [dm3] 3L_14453882_SNP [dm6]	A	C	2.098e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7937219	2R_7937219_SNP [dm3] 2R_12049714_SNP [dm6]	T	A	2.100e^-4	1	UTR_3_PRIME Drep-1
3R	19070239	3R_19070239_SNP [dm3] 3R_23244517_SNP [dm6]	A	G	2.100e^-4	1	INTRON CG4467
3L	22127468	3L_22127468_SNP [dm3] 3L_22134368_SNP [dm6]	C	G	2.124e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_inv mE1_TFBS_Trl
2R	6557545	2R_6557545_SNP [dm3] 2R_10670040_SNP [dm6]	C	T	2.132e^-4	1	INTERGENIC
2L	13908168	2L_13908168_SNP [dm3] 2L_13908168_SNP [dm6]	T	G	2.136e^-4	1	SYNONYMOUS_CODING Ance	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17514314	2R_17514314_SNP [dm3] 2R_21626809_SNP [dm6]	T	C	2.136e^-4	1	SPLICE_SITE_REGION mahj INTRON mahj
3L	11431036	3L_11431036_SNP [dm3] 3L_11437936_SNP [dm6]	T	C	2.146e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14171255	2R_14171255_SNP [dm3] 2R_18283750_SNP [dm6]	A	G	2.149e^-4	1	NON_SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18500928	2L_18500928_SNP [dm3] 2L_18500928_SNP [dm6]	T	C	2.164e^-4	1	UTR_5_PRIME kon UPSTREAM kon	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	11763896	3R_11763896_SNP [dm3] 3R_15938174_SNP [dm6]	G	T	2.167e^-4	1	INTRON Sap47
3L	18036279	3L_18036279_SNP [dm3] 3L_18043179_SNP [dm6]	A	G	2.167e^-4	1	SPLICE_SITE_REGION CG42393 INTRON Eip75B & 1 other
3L	18011625	3L_18011625_SNP [dm3] 3L_18018525_SNP [dm6]	C	T	2.167e^-4	1	INTRON Eip75B
X	4633856	X_4633856_DEL [dm3] X_4739823_DEL [dm6]	TGTGTGCCGGTTGTGTGTGT...	T	2.177e^-4	1	INTERGENIC
2R	8948003	2R_8948003_SNP [dm3] 2R_13060498_SNP [dm6]	A	C	2.187e^-4	1	INTRON Drl-2
2R	13590374	2R_13590374_SNP [dm3] 2R_17702869_SNP [dm6]	A	G	2.192e^-4	1	UPSTREAM snoRNA:snR38:54Ec & 1 other DOWNSTREAM snoRNA:U31:54Eb & 4 others INTRON Uhg1
2L	22423028	2L_22423028_SNP [dm3] 2L_22530296_SNP [dm6]	A	G	2.214e^-4	1	INTERGENIC
3R	17696829	3R_17696829_SNP [dm3] 3R_21871107_SNP [dm6]	G	A	2.216e^-4	1	UPSTREAM CG31431 INTRON CG31431	TF binding site mE1_TFBS_cad
X	17163261	X_17163261_SNP [dm3] X_17269228_SNP [dm6]	G	T	2.236e^-4	1	INTRON f
X	14481828	X_14481828_INS [dm3] X_14587795_INS [dm6]	T	TAATAT	2.244e^-4	1	INTRON CG9413
2R	6557549	2R_6557549_SNP [dm3] 2R_10670044_SNP [dm6]	A	G	2.253e^-4	1	INTERGENIC
3R	16659075	3R_16659075_SNP [dm3] 3R_20833353_SNP [dm6]	A	G	2.257e^-4	1	DOWNSTREAM CG31223 INTRON Synd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	11057037	2R_11057037_SNP [dm3] 2R_15169532_SNP [dm6]	C	T	2.263e^-4	1	INTRON igl
3R	16657290	3R_16657290_SNP [dm3] 3R_20831568_SNP [dm6]	T	C	2.270e^-4	1	NON_SYNONYMOUS_CODING CG31223 UPSTREAM AdSS	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	18596075	3R_18596075_SNP [dm3] 3R_22770353_SNP [dm6]	A	C	2.281e^-4	1	UPSTREAM CG43092 & 1 other DOWNSTREAM CG43094 & 1 other INTRON Usp12-46 & 1 other
X	3659557	X_3659557_SNP [dm3] X_3765524_SNP [dm6]	T	A	2.283e^-4	1	INTRON tlk
3R	25529487	3R_25529487_SNP [dm3] 3R_29703765_SNP [dm6]	A	C	2.283e^-4	1	INTERGENIC
3R	24567621	3R_24567621_SNP [dm3] 3R_28741899_SNP [dm6]	G	C	2.295e^-4	1	INTRON AstA-R2
3R	25743853	3R_25743853_SNP [dm3] 3R_29918131_SNP [dm6]	G	A	2.301e^-4	1	INTRON trp
X	14261005	X_14261005_SNP [dm3] X_14366972_SNP [dm6]	A	T	2.305e^-4	1	INTRON dpr8
X	7647097	X_7647097_SNP [dm3] X_7753064_SNP [dm6]	A	C	2.308e^-4	1	INTERGENIC
2L	21325191	2L_21325191_SNP [dm3] 2L_21325191_SNP [dm6]	G	C	2.325e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	11155418	X_11155418_SNP [dm3] X_11261385_SNP [dm6]	A	T	2.328e^-4	1	INTRON CG44422
3R	26815178	3R_26815178_SNP [dm3] 3R_30989456_SNP [dm6]	A	C	2.329e^-4	1	DOWNSTREAM CG31008 INTRON 5-HT7
X	14483388	X_14483388_SNP [dm3] X_14589355_SNP [dm6]	T	G	2.332e^-4	1	INTRON CG9413
2R	7886325	2R_7886325_SNP [dm3] 2R_11998820_SNP [dm6]	T	G	2.341e^-4	1	INTERGENIC
X	7783832	X_7783832_SNP [dm3] X_7889799_SNP [dm6]	T	A	2.376e^-4	1	NON_SYNONYMOUS_CODING Nek2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2L	10913181	2L_10913181_INS [dm3] 2L_10913181_INS [dm6]	G	GGCG	2.380e^-4	1	INTERGENIC
X	16747254	X_16747254_SNP [dm3] X_16853221_SNP [dm6]	C	A	2.383e^-4	1	START_GAINED CG13003 UTR_5_PRIME CG13003 INTRON CG13003
2L	7295741	2L_7295741_SNP [dm3] 2L_7295741_SNP [dm6]	C	T	2.386e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25529472	3R_25529472_INS [dm3] 3R_29703750_INS [dm6]	T	TTGCTGT	2.387e^-4	1	INTERGENIC
3L	14442957	3L_14442957_SNP [dm3] 3L_14449857_SNP [dm6]	A	T	2.394e^-4	1	INTRON bbg	TF binding site mE1_TFBS_sens
X	17222704	X_17222704_DEL [dm3] X_17328671_DEL [dm6]	CA	T	2.418e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	21301264	2L_21301264_SNP [dm3] 2L_21301264_SNP [dm6]	A	C	2.426e^-4	1	INTRON Mio
2R	6357745	2R_6357745_SNP [dm3] 2R_10470240_SNP [dm6]	G	T	2.447e^-4	1	SYNONYMOUS_CODING whd DOWNSTREAM CG11777	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10874613	2R_10874613_SNP [dm3] 2R_14987108_SNP [dm6]	C	T	2.454e^-4	1	DOWNSTREAM CG7639 INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	16666002	3R_16666002_INS [dm3] 3R_20840280_INS [dm6]	A	AA	2.454e^-4	1	DOWNSTREAM Synd INTERGENIC
X	14483443	X_14483443_SNP [dm3] X_14589410_SNP [dm6]	T	A	2.456e^-4	1	INTRON CG9413
2L	5864462	2L_5864462_SNP [dm3] 2L_5864462_SNP [dm6]	G	A	2.459e^-4	1	INTRON rau
3L	14444926	3L_14444926_SNP [dm3] 3L_14451826_SNP [dm6]	A	T	2.470e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8416551	2L_8416551_SNP [dm3] 2L_8416551_SNP [dm6]	T	C	2.473e^-4	1	INTRON Akap200	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	11687968	X_11687968_SNP [dm3] X_11793935_SNP [dm6]	A	G	2.484e^-4	1	INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_sens
2R	7888893	2R_7888893_SNP [dm3] 2R_12001388_SNP [dm6]	G	T	2.491e^-4	1	DOWNSTREAM otk INTERGENIC
2L	3712551	2L_3712551_SNP [dm3] 2L_3712551_SNP [dm6]	T	A	2.499e^-4	1	NON_SYNONYMOUS_CODING CG31955 UPSTREAM cutlet & 1 other INTRON CG31955	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2L	9469991	2L_9469991_SNP [dm3] 2L_9469991_SNP [dm6]	T	G	2.500e^-4	1	UPSTREAM CR43769 INTERGENIC
2R	6357346	2R_6357346_SNP [dm3] 2R_10469841_SNP [dm6]	G	A	2.502e^-4	1	SYNONYMOUS_CODING whd DOWNSTREAM CG11777
2R	19639516	2R_19639516_SNP [dm3] 2R_23751993_SNP [dm6]	A	T	2.510e^-4	1	SYNONYMOUS_CODING CG11300 UPSTREAM CG5532 DOWNSTREAM CG12491	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	5702569	X_5702569_SNP [dm3] X_5808536_SNP [dm6]	A	T	2.511e^-4	1	UPSTREAM Prosbeta2R1 INTERGENIC
2R	6113438	2R_6113438_SNP [dm3] 2R_10225933_SNP [dm6]	A	T	2.515e^-4	1	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14998509	3R_14998509_SNP [dm3] 3R_19172787_SNP [dm6]	A	T	2.545e^-4	1	INTERGENIC
2R	9676944	2R_9676944_SNP [dm3] 2R_13789439_SNP [dm6]	C	G	2.545e^-4	1	INTERGENIC
3R	19070219	3R_19070219_SNP [dm3] 3R_23244497_SNP [dm6]	T	C	2.547e^-4	1	INTRON CG4467
3L	11483389	3L_11483389_SNP [dm3] 3L_11490289_SNP [dm6]	T	G	2.551e^-4	1	INTRON chrb	TF binding site BDTNP1_TFBS_twi
2L	2327729	2L_2327729_SNP [dm3] 2L_2327729_SNP [dm6]	G	A	2.561e^-4	1	INTRON CG9967 & 1 other
2R	6353017	2R_6353017_SNP [dm3] 2R_10465512_SNP [dm6]	C	T	2.566e^-4	1	UTR_3_PRIME Galphao DOWNSTREAM Caf1-105	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16618705	3R_16618705_SNP [dm3] 3R_20792983_SNP [dm6]	T	A	2.573e^-4	1	INTRON Syp	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	14871284	3R_14871284_SNP [dm3] 3R_19045562_SNP [dm6]	A	C	2.575e^-4	1	UTR_3_PRIME cdi DOWNSTREAM cdi & 1 other
2L	2012422	2L_2012422_SNP [dm3] 2L_2012422_SNP [dm6]	G	A	2.580e^-4	1	DOWNSTREAM tRNA:CR31669 INTRON CG4238
2R	6348172	2R_6348172_SNP [dm3] 2R_10460667_SNP [dm6]	C	T	2.581e^-4	1	INTRON Galphao	TF binding site mE1_TFBS_HSA
3R	25127947	3R_25127947_SNP [dm3] 3R_29302225_SNP [dm6]	A	T	2.595e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8141914	3L_8141914_SNP [dm3] 3L_8148814_SNP [dm6]	G	A	2.595e^-4	1	INTRON CG13676
3L	6301896	3L_6301896_SNP [dm3] 3L_6308796_SNP [dm6]	G	A	2.597e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10156634	3R_10156634_SNP [dm3] 3R_14330912_SNP [dm6]	G	A	2.608e^-4	1	NON_SYNONYMOUS_CODING NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	5011095	2R_5011095_SNP [dm3] 2R_9123590_SNP [dm6]	C	G	2.609e^-4	1	UTR_3_PRIME CG18659 DOWNSTREAM GstE13
2R	11039680	2R_11039680_SNP [dm3] 2R_15152175_SNP [dm6]	A	T	2.612e^-4	1	INTERGENIC
3R	19070213	3R_19070213_SNP [dm3] 3R_23244491_SNP [dm6]	T	C	2.615e^-4	1	INTRON CG4467
3L	8532818	3L_8532818_SNP [dm3] 3L_8539718_SNP [dm6]	A	C	2.623e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	16171027	3R_16171027_INS [dm3] 3R_20345305_INS [dm6]	A	ACGACATA	2.634e^-4	1	INTERGENIC
2R	18570111	2R_18570111_SNP [dm3] 2R_22682606_SNP [dm6]	A	G	2.637e^-4	1	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14437544	3L_14437544_SNP [dm3] 3L_14444444_SNP [dm6]	C	T	2.643e^-4	1	INTRON bbg	TF binding site mE1_TFBS_cnc
3L	5338738	3L_5338738_SNP [dm3] 3L_5345638_SNP [dm6]	G	A	2.651e^-4	1	INTRON lama
X	18630545	X_18630545_INS [dm3] X_18736512_INS [dm6]	T	TT	2.658e^-4	1	INTERGENIC
2R	7883722	2R_7883722_SNP [dm3] 2R_11996217_SNP [dm6]	T	A	2.663e^-4	1	UPSTREAM CR45319 DOWNSTREAM CR45318 INTERGENIC
3R	17851486	3R_17851486_SNP [dm3] 3R_22025764_SNP [dm6]	A	C	2.666e^-4	1	UPSTREAM CG6028 DOWNSTREAM Cchl INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6113434	2R_6113434_SNP [dm3] 2R_10225929_SNP [dm6]	G	T	2.675e^-4	1	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19492259	3R_19492259_SNP [dm3] 3R_23666537_SNP [dm6]	T	C	2.677e^-4	1	INTRON CG31145	TF binding site mE1_TFBS_inv
2R	10874771	2R_10874771_SNP [dm3] 2R_14987266_SNP [dm6]	T	C	2.679e^-4	1	DOWNSTREAM CG7639 INTRON pcs	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	7883662	2R_7883662_SNP [dm3] 2R_11996157_SNP [dm6]	G	A	2.681e^-4	1	UPSTREAM CR45319 EXON CR45318
2L	11253256	2L_11253256_SNP [dm3] 2L_11253256_SNP [dm6]	A	T	2.709e^-4	1	INTRON ab
2L	11253269	2L_11253269_SNP [dm3] 2L_11253269_SNP [dm6]	T	G	2.709e^-4	1	INTRON ab
X	17222593	X_17222593_SNP [dm3] X_17328560_SNP [dm6]	G	T	2.713e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	2327760	2L_2327760_SNP [dm3] 2L_2327760_SNP [dm6]	G	A	2.722e^-4	1	INTRON CG9967 & 1 other
3L	10996115	3L_10996115_SNP [dm3] 3L_11003015_SNP [dm6]	A	G	2.726e^-4	1	INTRON klu
3R	24499219	3R_24499219_SNP [dm3] 3R_28673497_SNP [dm6]	A	G	2.736e^-4	1	INTERGENIC
2R	19649299	2R_19649299_SNP [dm3] 2R_23761776_SNP [dm6]	T	C	2.751e^-4	1	INTRON CG9850
3R	18400396	3R_18400396_SNP [dm3] 3R_22574674_SNP [dm6]	T	A	2.760e^-4	1	INTRON CG33110
3R	12651492	3R_12651492_SNP [dm3] 3R_16825770_SNP [dm6]	A	G	2.766e^-4	1	INTRON abd-A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5397685	2R_5397685_SNP [dm3] 2R_9510180_SNP [dm6]	A	C	2.771e^-4	1	INTRON brp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	14288079	3L_14288079_SNP [dm3] 3L_14294979_SNP [dm6]	T	C	2.792e^-4	1	INTRON fz
3L	14446480	3L_14446480_SNP [dm3] 3L_14453380_SNP [dm6]	T	A	2.795e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	20589232	2L_20589232_SNP [dm3] 2L_20589232_SNP [dm6]	G	A	2.801e^-4	1	INTRON CR44909
2R	16957463	2R_16957463_SNP [dm3] 2R_21069958_SNP [dm6]	C	T	2.803e^-4	1	UPSTREAM Cht9 & 1 other DOWNSTREAM CG10527 & 1 other INTERGENIC
2L	22533984	2L_22533984_DEL [dm3] 2L_22641252_DEL [dm6]	ACGTTTTGTTTGTGCCTGAA...	G	2.814e^-4	1	INTRON CG40006
3L	18011721	3L_18011721_SNP [dm3] 3L_18018621_SNP [dm6]	G	T	2.821e^-4	1	INTRON Eip75B
2R	13869663	2R_13869663_SNP [dm3] 2R_17982158_SNP [dm6]	A	G	2.826e^-4	1	INTRON dpr13
3R	18400390	3R_18400390_SNP [dm3] 3R_22574668_SNP [dm6]	T	A	2.834e^-4	1	INTRON CG33110
2R	5130505	2R_5130505_SNP [dm3] 2R_9243000_SNP [dm6]	T	C	2.834e^-4	1	DOWNSTREAM Cyp4p1 INTRON hig & 1 other
3L	20307546	3L_20307546_SNP [dm3] 3L_20314446_SNP [dm6]	G	A	2.840e^-4	1	DOWNSTREAM polo & 1 other INTRON alphaSnap	TF binding site mE1_TFBS_HSA
2R	10959872	2R_10959872_SNP [dm3] 2R_15072367_SNP [dm6]	C	A	2.850e^-4	1	INTERGENIC
3R	7673894	3R_7673894_SNP [dm3] 3R_11848172_SNP [dm6]	C	T	2.853e^-4	1	INTRON CG6959	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2510900	2L_2510900_SNP [dm3] 2L_2510900_SNP [dm6]	C	A	2.857e^-4	1	INTERGENIC
2R	12035665	2R_12035665_SNP [dm3] 2R_16148160_SNP [dm6]	T	C	2.857e^-4	1	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_sens
2R	6113443	2R_6113443_SNP [dm3] 2R_10225938_SNP [dm6]	G	T	2.858e^-4	1	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	11218282	X_11218282_DEL [dm3] X_11324249_DEL [dm6]	AA	A	2.859e^-4	1	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	17921587	3L_17921587_SNP [dm3] 3L_17928487_SNP [dm6]	A	T	2.868e^-4	1	INTERGENIC
3R	18984689	3R_18984689_SNP [dm3] 3R_23158967_SNP [dm6]	G	A	2.874e^-4	1	SYNONYMOUS_CODING VhaAC39-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	3389337	2L_3389337_SNP [dm3] 2L_3389337_SNP [dm6]	A	T	2.874e^-4	1	UPSTREAM CR44791 & 1 other INTERGENIC
2L	3389339	2L_3389339_SNP [dm3] 2L_3389339_SNP [dm6]	T	A	2.874e^-4	1	UPSTREAM CR44791 & 1 other INTERGENIC
3L	15512485	3L_15512485_SNP [dm3] 3L_15519385_SNP [dm6]	G	A	2.878e^-4	1	UPSTREAM mex1 DOWNSTREAM CR43159 INTRON mex1
2L	7899016	2L_7899016_SNP [dm3] 2L_7899016_SNP [dm6]	C	T	2.880e^-4	1	INTRON Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25439964	3R_25439964_SNP [dm3] 3R_29614242_SNP [dm6]	G	A	2.882e^-4	1	INTRON alph
2R	12136546	2R_12136546_SNP [dm3] 2R_16249041_SNP [dm6]	T	A	2.888e^-4	1	INTRON CngA
2L	7177160	2L_7177160_SNP [dm3] 2L_7177160_SNP [dm6]	T	C	2.888e^-4	1	DOWNSTREAM CR44613 INTERGENIC
X	11357004	X_11357004_SNP [dm3] X_11462971_SNP [dm6]	G	A	2.889e^-4	1	INTRON CG43155
2L	3418551	2L_3418551_SNP [dm3] 2L_3418551_SNP [dm6]	A	C	2.893e^-4	1	DOWNSTREAM CG31952 INTRON pgant2
3L	18428092	3L_18428092_SNP [dm3] 3L_18434992_SNP [dm6]	T	G	2.898e^-4	1	INTERGENIC
3R	24535812	3R_24535812_SNP [dm3] 3R_28710090_SNP [dm6]	C	T	2.903e^-4	1	INTRON htt
2L	7295266	2L_7295266_SNP [dm3] 2L_7295266_SNP [dm6]	C	A	2.917e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	11218320	X_11218320_SNP [dm3] X_11324287_SNP [dm6]	G	A	2.920e^-4	1	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_Med
3L	16299621	3L_16299621_SNP [dm3] 3L_16306521_SNP [dm6]	C	T	2.921e^-4	1	UPSTREAM CG13063 & 1 other INTERGENIC
3L	8372130	3L_8372130_SNP [dm3] 3L_8379030_SNP [dm6]	T	C	2.922e^-4	1	INTRON ImpE1
X	10017589	X_10017589_SNP [dm3] X_10123556_SNP [dm6]	T	A	2.925e^-4	1	UPSTREAM snoRNA:Me18S-A627 INTRON CR44894 & 1 other
X	10651890	X_10651890_SNP [dm3] X_10757857_SNP [dm6]	A	G	2.928e^-4	1	UPSTREAM Rph INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4058097	3L_4058097_SNP [dm3] 3L_4058097_SNP [dm6]	T	A	2.930e^-4	1	NON_SYNONYMOUS_CODING CG1136	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	17851487	3R_17851487_INS [dm3] 3R_22025765_INS [dm6]	A	AAC	2.934e^-4	1	UPSTREAM CG6028 DOWNSTREAM Cchl INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18984686	3R_18984686_SNP [dm3] 3R_23158964_SNP [dm6]	A	G	2.943e^-4	1	SYNONYMOUS_CODING VhaAC39-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	14791832	2L_14791832_SNP [dm3] 2L_14791832_SNP [dm6]	C	A	2.947e^-4	1	INTERGENIC
2L	2924156	2L_2924156_SNP [dm3] 2L_2924156_SNP [dm6]	C	A	2.949e^-4	1	INTRON lilli
3R	19070224	3R_19070224_SNP [dm3] 3R_23244502_SNP [dm6]	T	C	2.949e^-4	1	INTRON CG4467
3R	19070227	3R_19070227_SNP [dm3] 3R_23244505_SNP [dm6]	T	C	2.949e^-4	1	INTRON CG4467
3R	26696891	3R_26696891_SNP [dm3] 3R_30871169_SNP [dm6]	C	T	2.956e^-4	1	SYNONYMOUS_CODING CG15545	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	6354527	2R_6354527_SNP [dm3] 2R_10467022_SNP [dm6]	G	T	2.956e^-4	1	SYNONYMOUS_CODING Caf1-105	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20607300	2L_20607300_SNP [dm3] 2L_20607300_SNP [dm6]	C	T	2.957e^-4	1	INTRON CR44909 EXON CR43608
2R	7883794	2R_7883794_SNP [dm3] 2R_11996289_SNP [dm6]	C	G	2.959e^-4	1	UPSTREAM CR45319 DOWNSTREAM CR45318 INTERGENIC
2R	11077430	2R_11077430_SNP [dm3] 2R_15189925_SNP [dm6]	G	A	2.961e^-4	1	UTR_3_PRIME igl
3R	14306867	3R_14306867_SNP [dm3] 3R_18481145_SNP [dm6]	G	A	2.968e^-4	1	UPSTREAM fru INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16657277	3R_16657277_SNP [dm3] 3R_20831555_SNP [dm6]	C	T	2.982e^-4	1	SYNONYMOUS_CODING CG31223 UPSTREAM AdSS	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	5469944	3L_5469944_SNP [dm3] 3L_5476844_SNP [dm6]	G	C	2.985e^-4	1	INTERGENIC
2R	16964365	2R_16964365_SNP [dm3] 2R_21076860_SNP [dm6]	C	T	2.989e^-4	1	UTR_5_PRIME Treh	TF binding site mE1_TFBS_Trl
2R	9783311	2R_9783311_SNP [dm3] 2R_13895806_SNP [dm6]	T	G	2.994e^-4	1	INTRON shot
3R	19231315	3R_19231315_SNP [dm3] 3R_23405593_SNP [dm6]	T	A	2.997e^-4	1	NON_SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
3R	13911398	3R_13911398_SNP [dm3] 3R_18085676_SNP [dm6]	G	T	2.998e^-4	1	INTERGENIC
X	7647219	X_7647219_SNP [dm3] X_7753186_SNP [dm6]	C	T	3.009e^-4	1	INTERGENIC
2L	6574468	2L_6574468_SNP [dm3] 2L_6574468_SNP [dm6]	G	A	3.011e^-4	1	SYNONYMOUS_CODING CG11319	TF binding site mE1_TFBS_cad
2L	3344282	2L_3344282_SNP [dm3] 2L_3344282_SNP [dm6]	A	G	3.013e^-4	1	INTRON E23
3R	9722944	3R_9722944_SNP [dm3] 3R_13897222_SNP [dm6]	G	A	3.018e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	14287943	3L_14287943_SNP [dm3] 3L_14294843_SNP [dm6]	T	C	3.025e^-4	1	INTRON fz
3R	9089340	3R_9089340_SNP [dm3] 3R_13263618_SNP [dm6]	C	T	3.039e^-4	1	SYNONYMOUS_CODING Ravus UPSTREAM Su_var_3-7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	5975025	2R_5975025_SNP [dm3] 2R_10087520_SNP [dm6]	C	T	3.042e^-4	1	UPSTREAM CG2269 & 1 other INTRON CG2269
2R	18981070	2R_18981070_SNP [dm3] 2R_23093547_SNP [dm6]	T	C	3.043e^-4	1	INTRON CG9876
3R	9749922	3R_9749922_INS [dm3] 3R_13924200_INS [dm6]	A	AA	3.051e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17370598	3R_17370598_SNP [dm3] 3R_21544876_SNP [dm6]	T	C	3.060e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	21915862	3R_21915862_SNP [dm3] 3R_26090140_SNP [dm6]	T	C	3.074e^-4	1	INTRON dys	regulatory region REDfly_CRMs
2R	6763151	2R_6763151_SNP [dm3] 2R_10875646_SNP [dm6]	G	T	3.096e^-4	1	UPSTREAM nclb & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_Ubx
3L	11536384	3L_11536384_SNP [dm3] 3L_11543284_SNP [dm6]	T	C	3.100e^-4	1	INTRON Mob2
3L	14235745	3L_14235745_SNP [dm3] 3L_14242645_SNP [dm6]	T	A	3.108e^-4	1	INTERGENIC
3L	11537693	3L_11537693_SNP [dm3] 3L_11544593_SNP [dm6]	T	C	3.116e^-4	1	INTRON Mob2
2R	7886340	2R_7886340_MNP [dm3] 2R_11998835_MNP [dm6]	AGC	GTA	3.122e^-4	1	INTERGENIC
2R	6108339	2R_6108339_SNP [dm3] 2R_10220834_SNP [dm6]	C	T	3.129e^-4	1	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	2395484	2L_2395484_SNP [dm3] 2L_2395484_SNP [dm6]	G	A	3.136e^-4	1	INTRON VGlut
2L	5522231	2L_5522231_SNP [dm3] 2L_5522231_SNP [dm6]	G	A	3.143e^-4	1	SYNONYMOUS_CODING CG7371 DOWNSTREAM cl
2L	8895156	2L_8895156_DEL [dm3] 2L_8895156_DEL [dm6]	TT	T	3.156e^-4	1	INTERGENIC
2R	4412191	2R_4412191_SNP [dm3] 2R_8524686_SNP [dm6]	G	A	3.156e^-4	1	INTRON mtt
2R	15310115	2R_15310115_SNP [dm3] 2R_19422610_SNP [dm6]	C	A	3.162e^-4	1	INTRON hts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22126212	3L_22126212_SNP [dm3] 3L_22133112_SNP [dm6]	G	T	3.169e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16365036	3L_16365036_SNP [dm3] 3L_16371936_SNP [dm6]	G	A	3.172e^-4	1	UTR_3_PRIME roq DOWNSTREAM CG18814 & 1 other
X	10652972	X_10652972_SNP [dm3] X_10758939_SNP [dm6]	C	T	3.184e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17090370	2R_17090370_SNP [dm3] 2R_21202865_SNP [dm6]	C	T	3.186e^-4	1	UPSTREAM Glycogenin INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2L	4228724	2L_4228724_SNP [dm3] 2L_4228724_SNP [dm6]	C	A	3.199e^-4	1	UPSTREAM CR44608 DOWNSTREAM RpL40 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19138140	3R_19138140_SNP [dm3] 3R_23312418_SNP [dm6]	A	G	3.200e^-4	1	INTRON pnt
3R	16657314	3R_16657314_SNP [dm3] 3R_20831592_SNP [dm6]	A	G	3.209e^-4	1	NON_SYNONYMOUS_CODING CG31223	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	17690345	3L_17690345_SNP [dm3] 3L_17697245_SNP [dm6]	G	A	3.211e^-4	1	INTRON Ccn
2L	6904693	2L_6904693_SNP [dm3] 2L_6904693_SNP [dm6]	T	A	3.212e^-4	1	INTRON Nlg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19717735	2L_19717735_SNP [dm3] 2L_19717735_SNP [dm6]	G	A	3.218e^-4	1	INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9936967	3L_9936967_DEL [dm3] 3L_9943867_DEL [dm6]	TTTGT	T	3.242e^-4	1	INTRON CG34356
2L	20483619	2L_20483619_SNP [dm3] 2L_20483619_SNP [dm6]	T	A	3.246e^-4	1	INTRON CR44980	TF binding site BDTNP1_TFBS_twi
3L	16266201	3L_16266201_SNP [dm3] 3L_16273101_SNP [dm6]	A	G	3.248e^-4	1	INTRON CG13066
3L	5611856	3L_5611856_SNP [dm3] 3L_5618756_SNP [dm6]	T	A	3.249e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8415371	2L_8415371_SNP [dm3] 2L_8415371_SNP [dm6]	T	C	3.253e^-4	1	UPSTREAM Akap200 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Ubx
2R	6352410	2R_6352410_SNP [dm3] 2R_10464905_SNP [dm6]	C	T	3.268e^-4	1	UTR_3_PRIME Galphao
2R	16957488	2R_16957488_DEL [dm3] 2R_21069983_DEL [dm6]	ATATA	A	3.272e^-4	1	UPSTREAM Cht9 & 1 other DOWNSTREAM CG10527 & 1 other INTERGENIC
3L	8112986	3L_8112986_SNP [dm3] 3L_8119886_SNP [dm6]	A	C	3.283e^-4	1	INTRON msk
2R	6354626	2R_6354626_SNP [dm3] 2R_10467121_SNP [dm6]	C	T	3.285e^-4	1	SYNONYMOUS_CODING Caf1-105	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18792515	X_18792515_SNP [dm3] X_18898482_SNP [dm6]	G	A	3.292e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	6763150	2R_6763150_SNP [dm3] 2R_10875645_SNP [dm6]	C	T	3.298e^-4	1	UPSTREAM nclb & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_Ubx
3R	9722362	3R_9722362_INS [dm3] 3R_13896640_INS [dm6]	A	TTG	3.299e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2R	10751035	2R_10751035_SNP [dm3] 2R_14863530_SNP [dm6]	A	G	3.300e^-4	1	SYNONYMOUS_CODING Inr-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16973744	2R_16973744_SNP [dm3] 2R_21086239_SNP [dm6]	C	T	3.304e^-4	1	SYNONYMOUS_CODING Treh	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18453439	X_18453439_INS [dm3] X_18559406_INS [dm6]	G	GAGCATGG	3.305e^-4	1	INTRON Bx
3R	16655800	3R_16655800_SNP [dm3] 3R_20830078_SNP [dm6]	G	A	3.307e^-4	1	INTRON AdSS	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6111501	2R_6111501_SNP [dm3] 2R_10223996_SNP [dm6]	G	A	3.308e^-4	1	UTR_5_PRIME Hr46 INTRON Hr46 & 1 other
2R	16938611	2R_16938611_SNP [dm3] 2R_21051106_SNP [dm6]	C	A	3.319e^-4	1	SYNONYMOUS_CODING shg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10777949	3L_10777949_SNP [dm3] 3L_10784849_SNP [dm6]	T	G	3.325e^-4	1	INTRON CR44544
X	16160485	X_16160485_SNP [dm3] X_16266452_SNP [dm6]	T	C	3.327e^-4	1	NON_SYNONYMOUS_CODING CG12507 DOWNSTREAM kat80
3L	5223530	3L_5223530_DEL [dm3] 3L_5230430_DEL [dm6]	CAGCAGC	C	3.334e^-4	1	INTRON shep
3L	17918161	3L_17918161_SNP [dm3] 3L_17925061_SNP [dm6]	A	C	3.344e^-4	1	INTERGENIC
2R	3667344	2R_3667344_DEL [dm3] 2R_7779839_DEL [dm6]	TT	T	3.347e^-4	1	UTR_5_PRIME CG45093 & 1 other	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	20718986	2L_20718986_SNP [dm3] 2L_20718986_SNP [dm6]	G	C	3.357e^-4	1	INTERGENIC
3R	10904205	3R_10904205_SNP [dm3] 3R_15078483_SNP [dm6]	A	T	3.379e^-4	1	DOWNSTREAM CG6974 & 1 other INTERGENIC
2L	6511625	2L_6511625_SNP [dm3] 2L_6511625_SNP [dm6]	C	T	3.379e^-4	1	INTRON CG31637
2L	11253262	2L_11253262_SNP [dm3] 2L_11253262_SNP [dm6]	T	A	3.379e^-4	1	INTRON ab
2R	4663094	2R_4663094_SNP [dm3] 2R_8775589_SNP [dm6]	T	C	3.389e^-4	1	INTERGENIC
2L	4749379	2L_4749379_SNP [dm3] 2L_4749379_SNP [dm6]	T	G	3.391e^-4	1	INTRON CG15630
3L	22127492	3L_22127492_SNP [dm3] 3L_22134392_SNP [dm6]	C	G	3.392e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_inv mE1_TFBS_Trl
3R	24427975	3R_24427975_SNP [dm3] 3R_28602253_SNP [dm6]	G	A	3.404e^-4	1	UPSTREAM snoRNA:Psi28S-3305b & 1 other DOWNSTREAM snoRNA:Psi28S-3405a & 2 others INTRON Hrb98DE EXON snoRNA:Psi28S-3405c	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	16075470	3L_16075470_SNP [dm3] 3L_16082370_SNP [dm6]	C	T	3.404e^-4	1	UPSTREAM CG33258 DOWNSTREAM Mbs INTERGENIC
2R	7476394	2R_7476394_INS [dm3] 2R_11588889_INS [dm6]	C	CACC	3.405e^-4	1	CODON_INSERTION tou UPSTREAM snoRNA:Psi28S-1936	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	24684088	3R_24684088_SNP [dm3] 3R_28858366_SNP [dm6]	A	G	3.407e^-4	1	INTRON spg & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Kr mE1_TFBS_Trl
3L	10772435	3L_10772435_SNP [dm3] 3L_10779335_SNP [dm6]	T	C	3.412e^-4	1	INTERGENIC
2L	15610137	2L_15610137_SNP [dm3] 2L_15610137_SNP [dm6]	C	A	3.418e^-4	1	UPSTREAM CR44865 DOWNSTREAM CG15255 INTERGENIC
3R	14033325	3R_14033325_SNP [dm3] 3R_18207603_SNP [dm6]	T	C	3.421e^-4	1	INTRON CG7985
2L	11570918	2L_11570918_SNP [dm3] 2L_11570918_SNP [dm6]	C	T	3.422e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9861049	3R_9861049_SNP [dm3] 3R_14035327_SNP [dm6]	A	G	3.430e^-4	1	DOWNSTREAM CG3061 INTRON CG9922
2L	1819455	2L_1819455_SNP [dm3] 2L_1819455_SNP [dm6]	A	G	3.454e^-4	1	INTERGENIC
3R	18411224	3R_18411224_SNP [dm3] 3R_22585502_SNP [dm6]	C	T	3.468e^-4	1	SYNONYMOUS_CODING CG6937 UPSTREAM CG33107 DOWNSTREAM btn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	8111873	3L_8111873_SNP [dm3] 3L_8118773_SNP [dm6]	A	G	3.468e^-4	1	SYNONYMOUS_CODING msk
X	12339705	X_12339705_SNP [dm3] X_12445672_SNP [dm6]	A	T	3.468e^-4	1	NON_SYNONYMOUS_CODING Pkcdelta INTRON Pkcdelta	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19759201	3R_19759201_SNP [dm3] 3R_23933479_SNP [dm6]	T	C	3.474e^-4	1	SPLICE_SITE_REGION RpS19b UTR_5_PRIME RpS19b UPSTREAM CG5854 DOWNSTREAM CG13599	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	10983261	3L_10983261_SNP [dm3] 3L_10990161_SNP [dm6]	G	A	3.478e^-4	1	INTRON klu
2R	6734062	2R_6734062_SNP [dm3] 2R_10846557_SNP [dm6]	T	C	3.480e^-4	1	INTRON CG30015
3L	8484637	3L_8484637_SNP [dm3] 3L_8491537_SNP [dm6]	C	G	3.481e^-4	1	INTRON CG43163	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26159917	3R_26159917_SNP [dm3] 3R_30334195_SNP [dm6]	C	T	3.482e^-4	1	INTRON hdc
X	10287366	X_10287366_SNP [dm3] X_10393333_SNP [dm6]	G	A	3.494e^-4	1	INTRON flw
X	5144900	X_5144900_SNP [dm3] X_5250867_SNP [dm6]	A	G	3.495e^-4	1	UTR_3_PRIME CG15465 & 1 other
X	6332964	X_6332964_SNP [dm3] X_6438931_SNP [dm6]	G	T	3.498e^-4	1	INTRON CG42340
3L	7864540	3L_7864540_SNP [dm3] 3L_7871440_SNP [dm6]	T	C	3.501e^-4	1	INTRON CG32365
3R	8597376	3R_8597376_SNP [dm3] 3R_12771654_SNP [dm6]	C	G	3.526e^-4	1	INTRON beat-Vc
X	5554116	X_5554116_SNP [dm3] X_5660083_SNP [dm6]	G	A	3.541e^-4	1	INTRON CG42265
3R	21410221	3R_21410221_SNP [dm3] 3R_25584499_SNP [dm6]	A	G	3.543e^-4	1	UTR_5_PRIME msi INTRON msi
2R	3667118	2R_3667118_SNP [dm3] 2R_7779613_SNP [dm6]	C	T	3.544e^-4	1	UTR_5_PRIME CG45093 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3L	17666215	3L_17666215_SNP [dm3] 3L_17673115_SNP [dm6]	G	A	3.550e^-4	1	INTRON CG34251
2R	5397687	2R_5397687_SNP [dm3] 2R_9510182_SNP [dm6]	A	G	3.550e^-4	1	INTRON brp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	10777932	3L_10777932_SNP [dm3] 3L_10784832_SNP [dm6]	C	T	3.550e^-4	1	INTRON CR44544
X	5450650	X_5450650_DEL [dm3] X_5556617_DEL [dm6]	CG	C	3.552e^-4	1	INTRON Vsx2	TF binding site mE1_TFBS_Kr
3L	11036559	3L_11036559_SNP [dm3] 3L_11043459_SNP [dm6]	A	C	3.552e^-4	1	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2L	6213939	2L_6213939_SNP [dm3] 2L_6213939_SNP [dm6]	C	T	3.552e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	8411016	2L_8411016_SNP [dm3] 2L_8411016_SNP [dm6]	G	A	3.563e^-4	1	SYNONYMOUS_CODING CG13397
3R	16985279	3R_16985279_SNP [dm3] 3R_21159557_SNP [dm6]	C	T	3.564e^-4	1	NON_SYNONYMOUS_CODING CG10824 INTRON SNF4Agamma
2R	9229832	2R_9229832_MNP [dm3] 2R_13342327_MNP [dm6]	GGT	ATA	3.564e^-4	1	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	9715670	3L_9715670_SNP [dm3] 3L_9722570_SNP [dm6]	G	A	3.568e^-4	1	SYNONYMOUS_CODING nbs UPSTREAM defl	TF binding site mE1_TFBS_sens
X	11356986	X_11356986_SNP [dm3] X_11462953_SNP [dm6]	A	G	3.569e^-4	1	INTRON CG43155
2R	9598485	2R_9598485_SNP [dm3] 2R_13710980_SNP [dm6]	G	C	3.571e^-4	1	INTRON fas	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	7890694	2R_7890694_SNP [dm3] 2R_12003189_SNP [dm6]	G	C	3.572e^-4	1	SYNONYMOUS_CODING otk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2524130	3L_2524130_SNP [dm3] 3L_2524130_SNP [dm6]	G	A	3.574e^-4	1	INTRON Spn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	4588217	2R_4588217_DEL [dm3] 2R_8700712_DEL [dm6]	TTTAT	T	3.595e^-4	1	UTR_3_PRIME CG8584
3R	26615981	3R_26615981_SNP [dm3] 3R_30790259_SNP [dm6]	A	T	3.598e^-4	1	UTR_3_PRIME wts
2R	19880924	2R_19880924_SNP [dm3] 2R_23993401_SNP [dm6]	C	T	3.599e^-4	1	SYNONYMOUS_CODING CG3860 UPSTREAM mir-1009
2L	20044619	2L_20044619_SNP [dm3] 2L_20044619_SNP [dm6]	G	T	3.618e^-4	1	INTRON sNPF
3R	22987367	3R_22987367_SNP [dm3] 3R_27161645_SNP [dm6]	A	T	3.621e^-4	1	INTRON CG5909
2R	19158693	2R_19158693_SNP [dm3] 2R_23271170_SNP [dm6]	A	C	3.630e^-4	1	DOWNSTREAM ord & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14500790	3R_14500790_SNP [dm3] 3R_18675068_SNP [dm6]	T	C	3.631e^-4	1	UTR_3_PRIME CG7705 DOWNSTREAM CG7702	TF binding site mE1_TFBS_cad
3R	14500816	3R_14500816_SNP [dm3] 3R_18675094_SNP [dm6]	T	A	3.636e^-4	1	UTR_3_PRIME CG7705 DOWNSTREAM CG7702	TF binding site mE1_TFBS_cad
2R	7884943	2R_7884943_SNP [dm3] 2R_11997438_SNP [dm6]	C	G	3.638e^-4	1	INTERGENIC
X	12059633	X_12059633_SNP [dm3] X_12165600_SNP [dm6]	T	A	3.641e^-4	1	INTRON Ten-a
2L	4271304	2L_4271304_SNP [dm3] 2L_4271304_SNP [dm6]	G	A	3.650e^-4	1	INTERGENIC
2L	4271305	2L_4271305_SNP [dm3] 2L_4271305_SNP [dm6]	T	G	3.650e^-4	1	INTERGENIC
3L	5122485	3L_5122485_SNP [dm3] 3L_5129385_SNP [dm6]	T	C	3.654e^-4	1	UPSTREAM CG4597 INTERGENIC
3R	9547519	3R_9547519_SNP [dm3] 3R_13721797_SNP [dm6]	T	C	3.658e^-4	1	INTRON CG34383
3R	13409900	3R_13409900_SNP [dm3] 3R_17584178_SNP [dm6]	C	A	3.669e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	13261943	3L_13261943_SNP [dm3] 3L_13268843_SNP [dm6]	T	A	3.671e^-4	1	INTRON caps
3L	22126221	3L_22126221_SNP [dm3] 3L_22133121_SNP [dm6]	A	T	3.671e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5788607	3L_5788607_MNP [dm3] 3L_5795507_MNP [dm6]	AACATG	TGGCAT	3.673e^-4	1	INTRON Tektin-C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	2754872	2R_2754872_SNP [dm3] 2R_6867367_SNP [dm6]	T	C	3.693e^-4	1	UPSTREAM coro INTRON coro
2L	9654992	2L_9654992_SNP [dm3] 2L_9654992_SNP [dm6]	G	T	3.693e^-4	1	NON_SYNONYMOUS_CODING Apoltp
2L	17044312	2L_17044312_INS [dm3] 2L_17044312_INS [dm6]	AGA	GTTCT	3.699e^-4	1	INTERGENIC
X	6206521	X_6206521_SNP [dm3] X_6312488_SNP [dm6]	T	G	3.702e^-4	1	INTRON CG15894
X	18924312	X_18924312_INS [dm3] X_19030279_INS [dm6]	T	TATATGT	3.707e^-4	1	INTERGENIC
3L	13198738	3L_13198738_SNP [dm3] 3L_13205638_SNP [dm6]	A	G	3.722e^-4	1	INTERGENIC
X	5620422	X_5620422_SNP [dm3] X_5726389_SNP [dm6]	A	G	3.725e^-4	1	INTRON CG32758
2R	6804959	2R_6804959_SNP [dm3] 2R_10917454_SNP [dm6]	G	A	3.733e^-4	1	INTERGENIC
3R	10166788	3R_10166788_SNP [dm3] 3R_14341066_SNP [dm6]	C	A	3.746e^-4	1	INTRON NK7.1
3R	15307464	3R_15307464_SNP [dm3] 3R_19481742_SNP [dm6]	C	G	3.747e^-4	1	INTRON Dys
3L	3784491	3L_3784491_SNP [dm3] 3L_3784491_SNP [dm6]	T	C	3.755e^-4	1	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19493098	2R_19493098_SNP [dm3] 2R_23605575_SNP [dm6]	A	T	3.762e^-4	1	UPSTREAM CG17664 DOWNSTREAM CG17662 INTRON CG17664
2L	10274390	2L_10274390_SNP [dm3] 2L_10274390_SNP [dm6]	T	C	3.762e^-4	1	SYNONYMOUS_CODING Utx
X	5225035	X_5225035_SNP [dm3] X_5331002_SNP [dm6]	T	C	3.766e^-4	1	SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_HSA
2R	13741372	2R_13741372_SNP [dm3] 2R_17853867_SNP [dm6]	C	T	3.769e^-4	1	NON_SYNONYMOUS_CODING CG30323 INTRON olf186-F & 1 other
2L	12443335	2L_12443335_SNP [dm3] 2L_12443335_SNP [dm6]	T	G	3.772e^-4	1	SYNONYMOUS_CODING Oatp33Ea
3L	9526296	3L_9526296_SNP [dm3] 3L_9533196_SNP [dm6]	G	A	3.786e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3582678	3L_3582678_SNP [dm3] 3L_3582678_SNP [dm6]	C	G	3.789e^-4	1	INTRON Eip63E	TF binding site mE1_TFBS_inv
2L	17283437	2L_17283437_SNP [dm3] 2L_17283437_SNP [dm6]	T	A	3.792e^-4	1	INTERGENIC
X	3643947	X_3643947_SNP [dm3] X_3749914_SNP [dm6]	C	T	3.796e^-4	1	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7661142	2L_7661142_SNP [dm3] 2L_7661142_SNP [dm6]	G	A	3.803e^-4	1	INTRON Slob
3L	10235376	3L_10235376_SNP [dm3] 3L_10242276_SNP [dm6]	A	G	3.804e^-4	1	DOWNSTREAM CR44541 INTERGENIC
3L	10146634	3L_10146634_SNP [dm3] 3L_10153534_SNP [dm6]	A	T	3.805e^-4	1	DOWNSTREAM CG8072 INTRON dpr10
2L	10477559	2L_10477559_SNP [dm3] 2L_10477559_SNP [dm6]	G	A	3.808e^-4	1	SYNONYMOUS_CODING RluA-2	TF binding site mE1_TFBS_ttk
2L	5111978	2L_5111978_SNP [dm3] 2L_5111978_SNP [dm6]	C	T	3.812e^-4	1	INTRON Msp300
2L	3635798	2L_3635798_SNP [dm3] 2L_3635798_SNP [dm6]	G	T	3.816e^-4	1	INTRON for
3R	8966118	3R_8966118_SNP [dm3] 3R_13140396_SNP [dm6]	C	T	3.816e^-4	1	INTRON timeout & 2 others
X	14340821	X_14340821_SNP [dm3] X_14446788_SNP [dm6]	T	C	3.820e^-4	1	INTRON dpr8
3L	3814032	3L_3814032_DEL [dm3] 3L_3814032_DEL [dm6]	TT	A	3.822e^-4	1	UPSTREAM Scsalpha DOWNSTREAM CR43932 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
X	18014073	X_18014073_SNP [dm3] X_18120040_SNP [dm6]	T	A	3.824e^-4	1	DOWNSTREAM CR45605 INTERGENIC
X	4714340	X_4714340_SNP [dm3] X_4820307_SNP [dm6]	G	T	3.826e^-4	1	INTERGENIC
2L	20049970	2L_20049970_SNP [dm3] 2L_20049970_SNP [dm6]	C	A	3.847e^-4	1	INTRON sNPF
3L	14498863	3L_14498863_SNP [dm3] 3L_14505763_SNP [dm6]	A	T	3.854e^-4	1	INTRON bbg
2L	21969359	2L_21969359_SNP [dm3] 2L_21969359_SNP [dm6]	G	T	3.858e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	18395622	2R_18395622_SNP [dm3] 2R_22508117_SNP [dm6]	A	T	3.863e^-4	1	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4633835	X_4633835_SNP [dm3] X_4739802_SNP [dm6]	C	T	3.868e^-4	1	INTERGENIC
2L	14791078	2L_14791078_DEL [dm3] 2L_14791078_DEL [dm6]	GC	G	3.875e^-4	1	INTERGENIC
3L	10112543	3L_10112543_SNP [dm3] 3L_10119443_SNP [dm6]	A	G	3.877e^-4	1	INTRON dpr6
2R	17028401	2R_17028401_SNP [dm3] 2R_21140896_SNP [dm6]	G	A	3.883e^-4	1	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
X	4290921	X_4290921_SNP [dm3] X_4396888_SNP [dm6]	A	G	3.883e^-4	1	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9451386	2R_9451386_SNP [dm3] 2R_13563881_SNP [dm6]	C	A	3.891e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
3R	15307070	3R_15307070_SNP [dm3] 3R_19481348_SNP [dm6]	G	C	3.895e^-4	1	INTRON Dys
X	7066015	X_7066015_SNP [dm3] X_7171982_SNP [dm6]	A	G	3.897e^-4	1	INTRON CG9650 & 1 other
3R	25640067	3R_25640067_SNP [dm3] 3R_29814345_SNP [dm6]	G	A	3.913e^-4	1	NON_SYNONYMOUS_CODING ca DOWNSTREAM Vps16B	TF binding site mE1_TFBS_chinmo
3L	22127795	3L_22127795_SNP [dm3] 3L_22134695_SNP [dm6]	A	C	3.916e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_Kr mE1_TFBS_Trl
2L	10267767	2L_10267767_SNP [dm3] 2L_10267767_SNP [dm6]	A	C	3.920e^-4	1	INTRON CG4953
3L	1384331	3L_1384331_DEL [dm3] 3L_1384331_DEL [dm6]	AAAGAAAGAAA...	A	3.923e^-4	1	INTRON Ptp61F & 1 other
2L	3928161	2L_3928161_SNP [dm3] 2L_3928161_SNP [dm6]	A	C	3.936e^-4	1	INTRON fred	TF binding site mE1_TFBS_bab1
2R	7427948	2R_7427948_SNP [dm3] 2R_11540443_SNP [dm6]	T	A	3.938e^-4	1	INTERGENIC
3R	21670112	3R_21670112_SNP [dm3] 3R_25844390_SNP [dm6]	T	G	3.960e^-4	1	DOWNSTREAM CR45653 INTERGENIC
3L	13261960	3L_13261960_SNP [dm3] 3L_13268860_SNP [dm6]	C	A	3.960e^-4	1	INTRON caps
2R	19708514	2R_19708514_SNP [dm3] 2R_23820991_SNP [dm6]	A	G	3.962e^-4	1	INTRON CG5549	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12412238	3L_12412238_SNP [dm3] 3L_12419138_SNP [dm6]	C	T	3.964e^-4	1	INTERGENIC
3L	14500057	3L_14500057_SNP [dm3] 3L_14506957_SNP [dm6]	A	C	3.965e^-4	1	INTRON bbg
2L	20590706	2L_20590706_SNP [dm3] 2L_20590706_SNP [dm6]	A	C	3.969e^-4	1	INTRON CR44909
3L	10777943	3L_10777943_SNP [dm3] 3L_10784843_SNP [dm6]	C	T	3.970e^-4	1	INTRON CR44544
3R	26815018	3R_26815018_SNP [dm3] 3R_30989296_SNP [dm6]	A	G	3.971e^-4	1	DOWNSTREAM CG31008 INTRON 5-HT7
2R	9451405	2R_9451405_SNP [dm3] 2R_13563900_SNP [dm6]	C	T	3.985e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
3R	14154874	3R_14154874_SNP [dm3] 3R_18329152_SNP [dm6]	A	T	3.985e^-4	1	UPSTREAM CG31235 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	3328243	3R_3328243_SNP [dm3] 3R_7502521_SNP [dm6]	T	G	3.987e^-4	1	UPSTREAM CG1287 INTRON alpha-Est9
X	13349348	X_13349348_SNP [dm3] X_13455315_SNP [dm6]	T	C	3.997e^-4	1	INTRON Neto
2R	12158898	2R_12158898_SNP [dm3] 2R_16271393_SNP [dm6]	G	A	4.002e^-4	1	SYNONYMOUS_CODING Khc UPSTREAM CG33017	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	8143464	2L_8143464_SNP [dm3] 2L_8143464_SNP [dm6]	T	G	4.003e^-4	1	UTR_3_PRIME CG42762 DOWNSTREAM CG42763 INTRON CG8552	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8637651	2L_8637651_SNP [dm3] 2L_8637651_SNP [dm6]	C	G	4.005e^-4	1	INTRON Sema-1a
2L	20769140	2L_20769140_SNP [dm3] 2L_20769140_SNP [dm6]	G	A	4.005e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	16819229	2R_16819229_DEL [dm3] 2R_20931724_DEL [dm6]	ACTTAATTTCCT...	A	4.006e^-4	1	INTRON Rx
2R	16819244	2R_16819244_DEL [dm3] 2R_20931739_DEL [dm6]	AA	A	4.006e^-4	1	INTRON Rx
3R	10994597	3R_10994597_SNP [dm3] 3R_15168875_SNP [dm6]	C	G	4.006e^-4	1	INTRON Gyc88E
3L	10999700	3L_10999700_SNP [dm3] 3L_11006600_SNP [dm6]	T	C	4.007e^-4	1	INTRON klu
2R	7883724	2R_7883724_SNP [dm3] 2R_11996219_SNP [dm6]	A	C	4.011e^-4	1	UPSTREAM CR45319 DOWNSTREAM CR45318 INTERGENIC
2R	16421375	2R_16421375_DEL [dm3] 2R_20533870_DEL [dm6]	ACTATACT	A	4.015e^-4	1	UTR_3_PRIME CG30154 UPSTREAM CG18067 DOWNSTREAM CR44651
3R	22758421	3R_22758421_DEL [dm3] 3R_26932699_DEL [dm6]	TCGCGCT	T	4.016e^-4	1	INTRON sda
2R	9127248	2R_9127248_SNP [dm3] 2R_13239743_SNP [dm6]	T	A	4.017e^-4	1	UTR_5_PRIME GstE14 UPSTREAM CG4679	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17028286	2R_17028286_SNP [dm3] 2R_21140781_SNP [dm6]	C	A	4.034e^-4	1	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	7863509	3L_7863509_SNP [dm3] 3L_7870409_SNP [dm6]	G	A	4.034e^-4	1	INTRON CG32365
2L	708179	2L_708179_SNP [dm3] 2L_708179_SNP [dm6]	T	A	4.047e^-4	1	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19992918	X_19992918_SNP [dm3] X_20098885_SNP [dm6]	T	G	4.055e^-4	1	INTERGENIC
X	8011615	X_8011615_SNP [dm3] X_8117582_SNP [dm6]	C	T	4.055e^-4	1	SYNONYMOUS_CODING CG1575	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5151133	X_5151133_SNP [dm3] X_5257100_SNP [dm6]	C	G	4.069e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8184815	X_8184815_DEL [dm3] X_8290782_DEL [dm6]	AA	A	4.083e^-4	1	INTRON nAChRalpha3	TF binding site mE1_TFBS_cad
2R	13907939	2R_13907939_SNP [dm3] 2R_18020434_SNP [dm6]	T	C	4.088e^-4	1	SYNONYMOUS_CODING CG10910 DOWNSTREAM CG5084
X	5680794	X_5680794_SNP [dm3] X_5786761_SNP [dm6]	T	G	4.091e^-4	1	INTRON CG42699
2R	9321141	2R_9321141_SNP [dm3] 2R_13433636_SNP [dm6]	G	T	4.097e^-4	1	UTR_3_PRIME CG30065 UPSTREAM Ser8 DOWNSTREAM tRNA:L3:49Fb INTRON CG42321
2L	16043708	2L_16043708_SNP [dm3] 2L_16043708_SNP [dm6]	G	A	4.106e^-4	1	UPSTREAM BicC INTRON BicC & 1 other
3R	9861079	3R_9861079_SNP [dm3] 3R_14035357_SNP [dm6]	A	T	4.113e^-4	1	DOWNSTREAM CG3061 INTRON CG9922
3L	3691254	3L_3691254_SNP [dm3] 3L_3691254_SNP [dm6]	A	G	4.117e^-4	1	INTERGENIC
3L	3251770	3L_3251770_SNP [dm3] 3L_3251770_SNP [dm6]	G	A	4.120e^-4	1	DOWNSTREAM mir-282 EXON CR43626
3R	24375834	3R_24375834_SNP [dm3] 3R_28550112_SNP [dm6]	A	G	4.131e^-4	1	INTERGENIC
2R	7883726	2R_7883726_SNP [dm3] 2R_11996221_SNP [dm6]	G	T	4.134e^-4	1	UPSTREAM CR45319 DOWNSTREAM CR45318 INTERGENIC
3L	4790638	3L_4790638_SNP [dm3] 3L_4790638_SNP [dm6]	G	A	4.141e^-4	1	SYNONYMOUS_CODING RhoGEF64C	TF binding site mE1_TFBS_chinmo
3R	14501992	3R_14501992_SNP [dm3] 3R_18676270_SNP [dm6]	G	A	4.142e^-4	1	UTR_3_PRIME CG7705 INTRON CG7705	TF binding site mE1_TFBS_cad
3L	14416265	3L_14416265_SNP [dm3] 3L_14423165_SNP [dm6]	G	T	4.144e^-4	1	INTRON bbg
3L	8628099	3L_8628099_SNP [dm3] 3L_8634999_SNP [dm6]	T	C	4.152e^-4	1	SPLICE_SITE_REGION Zasp66 UPSTREAM Cdc6 INTRON Zasp66
2L	13030458	2L_13030458_SNP [dm3] 2L_13030458_SNP [dm6]	T	G	4.175e^-4	1	SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7660850	2L_7660850_SNP [dm3] 2L_7660850_SNP [dm6]	C	A	4.178e^-4	1	INTRON Slob
2R	9229809	2R_9229809_SNP [dm3] 2R_13342304_SNP [dm6]	T	A	4.180e^-4	1	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9229812	2R_9229812_SNP [dm3] 2R_13342307_SNP [dm6]	G	A	4.180e^-4	1	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9229813	2R_9229813_SNP [dm3] 2R_13342308_SNP [dm6]	C	A	4.180e^-4	1	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9229814	2R_9229814_INS [dm3] 2R_13342309_INS [dm6]	C	CATATTA	4.180e^-4	1	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9229819	2R_9229819_MNP [dm3] 2R_13342314_MNP [dm6]	TGG	ATA	4.180e^-4	1	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9229824	2R_9229824_MNP [dm3] 2R_13342319_MNP [dm6]	GCT	ATA	4.180e^-4	1	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9229829	2R_9229829_SNP [dm3] 2R_13342324_SNP [dm6]	T	A	4.180e^-4	1	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9229830	2R_9229830_SNP [dm3] 2R_13342325_SNP [dm6]	C	T	4.180e^-4	1	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	21301298	2L_21301298_SNP [dm3] 2L_21301298_SNP [dm6]	C	A	4.187e^-4	1	INTRON Mio
2L	3160350	2L_3160350_SNP [dm3] 2L_3160350_SNP [dm6]	C	G	4.189e^-4	1	NON_SYNONYMOUS_CODING gkt UPSTREAM Mad	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6206470	X_6206470_DEL [dm3] X_6312437_DEL [dm6]	CC	C	4.191e^-4	1	INTRON CG15894
2L	7489584	2L_7489584_SNP [dm3] 2L_7489584_SNP [dm6]	T	G	4.207e^-4	1	INTRON Ziz
3R	19070240	3R_19070240_SNP [dm3] 3R_23244518_SNP [dm6]	C	T	4.207e^-4	1	INTRON CG4467
X	4560398	X_4560398_SNP [dm3] X_4666365_SNP [dm6]	G	A	4.209e^-4	1	DOWNSTREAM rap INTRON CG3009
2L	4276509	2L_4276509_SNP [dm3] 2L_4276509_SNP [dm6]	A	T	4.209e^-4	1	INTERGENIC
2R	19675826	2R_19675826_SNP [dm3] 2R_23788303_SNP [dm6]	G	A	4.211e^-4	1	INTRON CG9850
X	702651	X_702651_SNP [dm3] X_808618_SNP [dm6]	G	T	4.214e^-4	1	UTR_3_PRIME CG43867 DOWNSTREAM Sec22
2L	16414318	2L_16414318_SNP [dm3] 2L_16414318_SNP [dm6]	A	T	4.215e^-4	1	INTRON CG5888	TF binding site BDTNP1_TFBS_twi
2R	9523825	2R_9523825_SNP [dm3] 2R_13636320_SNP [dm6]	A	G	4.217e^-4	1	INTRON fas
2L	20593404	2L_20593404_SNP [dm3] 2L_20593404_SNP [dm6]	A	C	4.217e^-4	1	INTRON CR44909
X	5554370	X_5554370_SNP [dm3] X_5660337_SNP [dm6]	T	C	4.227e^-4	1	SYNONYMOUS_CODING CG42265	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	2258237	3R_2258237_SNP [dm3] 3R_6432515_SNP [dm6]	A	T	4.229e^-4	1	INTRON gpp
3R	25337700	3R_25337700_SNP [dm3] 3R_29511978_SNP [dm6]	A	G	4.230e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10777936	3L_10777936_SNP [dm3] 3L_10784836_SNP [dm6]	C	A	4.235e^-4	1	INTRON CR44544
2R	16421515	2R_16421515_SNP [dm3] 2R_20534010_SNP [dm6]	C	T	4.241e^-4	1	UPSTREAM CG18067 DOWNSTREAM CG30154 INTERGENIC
2L	11929809	2L_11929809_SNP [dm3] 2L_11929809_SNP [dm6]	C	A	4.250e^-4	1	INTERGENIC
2R	18992414	2R_18992414_SNP [dm3] 2R_23104891_SNP [dm6]	C	A	4.254e^-4	1	NON_SYNONYMOUS_CODING Gr59d	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20308907	3L_20308907_SNP [dm3] 3L_20315807_SNP [dm6]	A	C	4.254e^-4	1	UTR_3_PRIME alphaSnap INTRON CR43875
3L	4619278	3L_4619278_DEL [dm3] 3L_4619278_DEL [dm6]	GCTGGATTGCTTATAAAG...	G	4.257e^-4	1	INTRON Src64B
2L	708205	2L_708205_SNP [dm3] 2L_708205_SNP [dm6]	T	C	4.264e^-4	1	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7071278	3L_7071278_SNP [dm3] 3L_7078178_SNP [dm6]	T	A	4.268e^-4	1	UPSTREAM CG8641 INTERGENIC
3R	21328779	3R_21328779_SNP [dm3] 3R_25503057_SNP [dm6]	T	C	4.272e^-4	1	UPSTREAM CR45651 & 1 other EXON CR43457	TF binding site mE1_TFBS_HSA
3L	8848822	3L_8848822_SNP [dm3] 3L_8855722_SNP [dm6]	G	A	4.280e^-4	1	INTRON dally
3L	8895277	3L_8895277_SNP [dm3] 3L_8902177_SNP [dm6]	G	A	4.285e^-4	1	UPSTREAM TrpA1 INTRON TrpA1
3L	8178778	3L_8178778_SNP [dm3] 3L_8185678_SNP [dm6]	C	T	4.286e^-4	1	UPSTREAM ERR INTRON ERR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
X	10596139	X_10596139_SNP [dm3] X_10702106_SNP [dm6]	G	C	4.294e^-4	1	INTRON X11Lbeta
X	8012048	X_8012048_SNP [dm3] X_8118015_SNP [dm6]	T	C	4.299e^-4	1	SYNONYMOUS_CODING CG1575	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8184820	X_8184820_SNP [dm3] X_8290787_SNP [dm6]	G	A	4.306e^-4	1	INTRON nAChRalpha3	TF binding site mE1_TFBS_cad
2L	4276737	2L_4276737_SNP [dm3] 2L_4276737_SNP [dm6]	A	G	4.306e^-4	1	DOWNSTREAM Art2 INTERGENIC
3R	18181073	3R_18181073_SNP [dm3] 3R_22355351_SNP [dm6]	T	A	4.310e^-4	1	INTRON rdhB	TF binding site mE1_TFBS_cad
3L	14446981	3L_14446981_SNP [dm3] 3L_14453881_SNP [dm6]	G	A	4.314e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	22025766	2L_22025766_SNP [dm3] 2L_22025766_SNP [dm6]	A	G	4.315e^-4	1	DOWNSTREAM tio INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	14873793	2L_14873793_SNP [dm3] 2L_14873793_SNP [dm6]	T	C	4.318e^-4	1	DOWNSTREAM CG15278 INTERGENIC
2L	12746729	2L_12746729_INS [dm3] 2L_12746729_INS [dm6]	T	CTCAGTAATAAAAACAAACT...	4.336e^-4	1	INTERGENIC
3L	13261961	3L_13261961_DEL [dm3] 3L_13268861_DEL [dm6]	AAGGATATCAATAAGAT...	A	4.344e^-4	1	INTRON caps
3L	5316350	3L_5316350_SNP [dm3] 3L_5323250_SNP [dm6]	A	T	4.368e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7886334	2R_7886334_SNP [dm3] 2R_11998829_SNP [dm6]	C	T	4.369e^-4	1	INTERGENIC
3L	10777945	3L_10777945_SNP [dm3] 3L_10784845_SNP [dm6]	T	C	4.374e^-4	1	INTRON CR44544
X	16535728	X_16535728_SNP [dm3] X_16641695_SNP [dm6]	C	A	4.396e^-4	1	SYNONYMOUS_CODING mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3L	3494469	3L_3494469_SNP [dm3] 3L_3494469_SNP [dm6]	A	G	4.407e^-4	1	INTRON CG42324	TF binding site mE1_TFBS_inv
3R	25705227	3R_25705227_SNP [dm3] 3R_29879505_SNP [dm6]	A	G	4.412e^-4	1	SYNONYMOUS_CODING CG31038	TF binding site mE1_TFBS_chinmo
3L	6001341	3L_6001341_SNP [dm3] 3L_6008241_SNP [dm6]	T	C	4.431e^-4	1	INTRON PVRAP
3L	12928845	3L_12928845_SNP [dm3] 3L_12935745_SNP [dm6]	A	T	4.432e^-4	1	INTERGENIC
3R	24437888	3R_24437888_SNP [dm3] 3R_28612166_SNP [dm6]	C	A	4.440e^-4	1	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21915869	3R_21915869_SNP [dm3] 3R_26090147_SNP [dm6]	T	C	4.443e^-4	1	INTRON dys	regulatory region REDfly_CRMs
3R	16344307	3R_16344307_SNP [dm3] 3R_20518585_SNP [dm6]	A	C	4.444e^-4	1	INTERGENIC
2R	14924792	2R_14924792_SNP [dm3] 2R_19037287_SNP [dm6]	G	A	4.455e^-4	1	UPSTREAM CG15115 INTERGENIC
2R	14924795	2R_14924795_SNP [dm3] 2R_19037290_SNP [dm6]	T	C	4.455e^-4	1	UPSTREAM CG15115 INTERGENIC
2R	11039051	2R_11039051_SNP [dm3] 2R_15151546_SNP [dm6]	A	T	4.470e^-4	1	INTERGENIC
3R	24642518	3R_24642518_SNP [dm3] 3R_28816796_SNP [dm6]	A	G	4.475e^-4	1	SPLICE_SITE_REGION CG1646 SYNONYMOUS_CODING CG1646 UTR_3_PRIME CG1646 DOWNSTREAM CG1523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9322763	3L_9322763_SNP [dm3] 3L_9329663_SNP [dm6]	C	G	4.487e^-4	1	INTERGENIC
2L	21333362	2L_21333362_SNP [dm3] 2L_21333362_SNP [dm6]	T	G	4.495e^-4	1	INTRON dimm	TF binding site mE1_TFBS_inv
3R	14987040	3R_14987040_SNP [dm3] 3R_19161318_SNP [dm6]	C	T	4.508e^-4	1	UTR_3_PRIME CG42359 INTRON CG42358	TF binding site BDTNP1_TFBS_hb
2L	11475833	2L_11475833_SNP [dm3] 2L_11475833_SNP [dm6]	G	C	4.518e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
2L	17044316	2L_17044316_SNP [dm3] 2L_17044316_SNP [dm6]	C	G	4.520e^-4	1	INTERGENIC
2L	17044317	2L_17044317_SNP [dm3] 2L_17044317_SNP [dm6]	C	T	4.520e^-4	1	INTERGENIC
3L	5337336	3L_5337336_SNP [dm3] 3L_5344236_SNP [dm6]	G	A	4.526e^-4	1	SYNONYMOUS_CODING lama	TF binding site mE1_TFBS_cad
3R	24375138	3R_24375138_SNP [dm3] 3R_28549416_SNP [dm6]	A	T	4.528e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	21325292	2L_21325292_SNP [dm3] 2L_21325292_SNP [dm6]	T	G	4.529e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
2L	9981551	2L_9981551_SNP [dm3] 2L_9981551_SNP [dm6]	T	G	4.555e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	2522317	2L_2522317_SNP [dm3] 2L_2522317_SNP [dm6]	C	T	4.558e^-4	1	INTERGENIC
2R	9127209	2R_9127209_SNP [dm3] 2R_13239704_SNP [dm6]	T	C	4.561e^-4	1	UPSTREAM GstE14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12086806	2R_12086806_SNP [dm3] 2R_16199301_SNP [dm6]	G	T	4.577e^-4	1	UTR_3_PRIME CG42837 & 1 other DOWNSTREAM shark	TF binding site mE1_TFBS_cad
2L	3928228	2L_3928228_SNP [dm3] 2L_3928228_SNP [dm6]	T	A	4.580e^-4	1	INTRON fred	TF binding site mE1_TFBS_bab1
2L	5128017	2L_5128017_SNP [dm3] 2L_5128017_SNP [dm6]	G	A	4.584e^-4	1	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad
2R	17317990	2R_17317990_SNP [dm3] 2R_21430485_SNP [dm6]	G	A	4.586e^-4	1	INTRON Sdc
2R	16422163	2R_16422163_SNP [dm3] 2R_20534658_SNP [dm6]	G	C	4.593e^-4	1	SYNONYMOUS_CODING CG18067 DOWNSTREAM CG30154
2L	2524708	2L_2524708_SNP [dm3] 2L_2524708_SNP [dm6]	A	T	4.596e^-4	1	INTERGENIC
3R	14740040	3R_14740040_SNP [dm3] 3R_18914318_SNP [dm6]	C	T	4.599e^-4	1	UPSTREAM Xrp1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	7295242	2L_7295242_INS [dm3] 2L_7295242_INS [dm6]	A	AGTT	4.606e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7295246	2L_7295246_DEL [dm3] 2L_7295246_DEL [dm6]	TAACTAGCT	T	4.606e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24437630	3R_24437630_SNP [dm3] 3R_28611908_SNP [dm6]	A	C	4.610e^-4	1	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5861912	2L_5861912_SNP [dm3] 2L_5861912_SNP [dm6]	C	A	4.622e^-4	1	INTRON rau
3R	16003575	3R_16003575_SNP [dm3] 3R_20177853_SNP [dm6]	A	C	4.645e^-4	1	INTERGENIC
X	2793703	X_2793703_SNP [dm3] X_2899670_SNP [dm6]	G	A	4.647e^-4	1	INTRON kirre
3R	23402384	3R_23402384_SNP [dm3] 3R_27576662_SNP [dm6]	A	T	4.652e^-4	1	INTRON wdb
2R	10959869	2R_10959869_SNP [dm3] 2R_15072364_SNP [dm6]	A	C	4.655e^-4	1	INTERGENIC
2L	3587541	2L_3587541_SNP [dm3] 2L_3587541_SNP [dm6]	A	C	4.659e^-4	1	DOWNSTREAM CR43823 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med
2R	2851400	2R_2851400_SNP [dm3] 2R_6963895_SNP [dm6]	C	T	4.671e^-4	1	INTRON mim & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21333465	2L_21333465_SNP [dm3] 2L_21333465_SNP [dm6]	G	T	4.672e^-4	1	INTRON dimm	TF binding site mE1_TFBS_inv
2R	13907959	2R_13907959_SNP [dm3] 2R_18020454_SNP [dm6]	G	A	4.674e^-4	1	NON_SYNONYMOUS_CODING CG10910 DOWNSTREAM CG5084
X	7647216	X_7647216_SNP [dm3] X_7753183_SNP [dm6]	A	T	4.678e^-4	1	INTERGENIC
3R	20338183	3R_20338183_SNP [dm3] 3R_24512461_SNP [dm6]	T	C	4.690e^-4	1	UTR_3_PRIME nAChRbeta2 INTRON nAChRbeta2	TF binding site BDTNP1_TFBS_dl
2L	20621517	2L_20621517_SNP [dm3] 2L_20621517_SNP [dm6]	G	C	4.706e^-4	1	INTRON CR44909
3R	23836064	3R_23836064_SNP [dm3] 3R_28010342_SNP [dm6]	A	T	4.709e^-4	1	INTERGENIC
3L	13266687	3L_13266687_SNP [dm3] 3L_13273587_SNP [dm6]	A	G	4.711e^-4	1	INTRON caps
X	10085425	X_10085425_SNP [dm3] X_10191392_SNP [dm6]	G	A	4.724e^-4	1	SYNONYMOUS_CODING CG43902 INTRON CR44894
3L	2907826	3L_2907826_SNP [dm3] 3L_2907826_SNP [dm6]	C	A	4.730e^-4	1	INTRON Shab
2R	18777408	2R_18777408_SNP [dm3] 2R_22889885_SNP [dm6]	T	C	4.738e^-4	1	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	13266657	3L_13266657_SNP [dm3] 3L_13273557_SNP [dm6]	T	A	4.740e^-4	1	INTRON caps
2R	8157020	2R_8157020_SNP [dm3] 2R_12269515_SNP [dm6]	T	C	4.741e^-4	1	INTRON Cam
2L	5334568	2L_5334568_SNP [dm3] 2L_5334568_SNP [dm6]	A	G	4.742e^-4	1	INTRON fusl
2R	18570426	2R_18570426_INS [dm3] 2R_22682921_INS [dm6]	T	TACATCGTTTTTCT...	4.742e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	14500711	3R_14500711_SNP [dm3] 3R_18674989_SNP [dm6]	T	G	4.743e^-4	1	UTR_3_PRIME CG7705 DOWNSTREAM CG7702	TF binding site mE1_TFBS_cad
2L	20622309	2L_20622309_SNP [dm3] 2L_20622309_SNP [dm6]	G	A	4.747e^-4	1	INTRON CR44909
2R	7883735	2R_7883735_INS [dm3] 2R_11996230_INS [dm6]	T	TAAAT	4.761e^-4	1	UPSTREAM CR45319 DOWNSTREAM CR45318 INTERGENIC
3L	1981631	3L_1981631_DEL [dm3] 3L_1981631_DEL [dm6]	CTTACAAATTGCTAGC...	C	4.763e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3786960	3L_3786960_SNP [dm3] 3L_3786960_SNP [dm6]	T	C	4.779e^-4	1	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	13131604	2R_13131604_SNP [dm3] 2R_17244099_SNP [dm6]	C	T	4.783e^-4	1	INTRON mbl	TF binding site mE1_TFBS_inv
3L	11793676	3L_11793676_SNP [dm3] 3L_11800576_SNP [dm6]	A	G	4.783e^-4	1	DOWNSTREAM tRNA:CR32093 INTRON CG10361
X	16548652	X_16548652_SNP [dm3] X_16654619_SNP [dm6]	A	G	4.794e^-4	1	SYNONYMOUS_CODING CG9723 UPSTREAM r	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_sens
2L	12065167	2L_12065167_SNP [dm3] 2L_12065167_SNP [dm6]	A	C	4.798e^-4	1	INTRON CG14946	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6349010	2R_6349010_SNP [dm3] 2R_10461505_SNP [dm6]	C	T	4.803e^-4	1	INTRON Galphao	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12059668	X_12059668_SNP [dm3] X_12165635_SNP [dm6]	G	T	4.806e^-4	1	INTRON Ten-a
X	8976612	X_8976612_SNP [dm3] X_9082579_SNP [dm6]	T	A	4.812e^-4	1	UTR_3_PRIME HP1b UPSTREAM APC4 DOWNSTREAM HP1b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
2R	8875744	2R_8875744_SNP [dm3] 2R_12988239_SNP [dm6]	C	T	4.827e^-4	1	INTERGENIC
2R	4588231	2R_4588231_DEL [dm3] 2R_8700726_DEL [dm6]	ATA	GC	4.837e^-4	1	UTR_3_PRIME CG8584
3L	7898559	3L_7898559_SNP [dm3] 3L_7905459_SNP [dm6]	G	A	4.844e^-4	1	INTRON pbl
3R	9093321	3R_9093321_SNP [dm3] 3R_13267599_SNP [dm6]	C	T	4.850e^-4	1	SYNONYMOUS_CODING Su_var_3-7	TF binding site mE1_TFBS_chinmo
3L	13289664	3L_13289664_SNP [dm3] 3L_13296564_SNP [dm6]	T	A	4.851e^-4	1	UTR_3_PRIME Sfp70A4 UPSTREAM CR45253 DOWNSTREAM Sfp70A4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20207685	2R_20207685_SNP [dm3] 2R_24320162_SNP [dm6]	T	C	4.852e^-4	1	INTERGENIC
3L	10519178	3L_10519178_SNP [dm3] 3L_10526078_SNP [dm6]	C	G	4.852e^-4	1	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3960562	3L_3960562_SNP [dm3] 3L_3960562_SNP [dm6]	A	G	4.879e^-4	1	UPSTREAM CG12605 INTRON CG12605
3L	14724015	3L_14724015_SNP [dm3] 3L_14730915_SNP [dm6]	G	A	4.885e^-4	1	INTRON ome
2L	20625302	2L_20625302_SNP [dm3] 2L_20625302_SNP [dm6]	T	A	4.890e^-4	1	EXON CR44909
2R	15264536	2R_15264536_SNP [dm3] 2R_19377031_SNP [dm6]	A	G	4.893e^-4	1	SYNONYMOUS_CODING CG10062 UTR_5_PRIME CG10062	TF binding site mE1_TFBS_cad
3L	9321976	3L_9321976_SNP [dm3] 3L_9328876_SNP [dm6]	A	T	4.900e^-4	1	INTERGENIC
2R	19676000	2R_19676000_SNP [dm3] 2R_23788477_SNP [dm6]	T	A	4.916e^-4	1	INTRON CG9850
3R	23987243	3R_23987243_DEL [dm3] 3R_28161521_DEL [dm6]	TT	T	4.918e^-4	1	INTRON CG34354
3R	12976317	3R_12976317_SNP [dm3] 3R_17150595_SNP [dm6]	C	T	4.922e^-4	1	UTR_5_PRIME CG5285 DOWNSTREAM Det	TF binding site mE1_TFBS_ttk
3R	17851459	3R_17851459_SNP [dm3] 3R_22025737_SNP [dm6]	T	A	4.923e^-4	1	UPSTREAM CG6028 DOWNSTREAM Cchl INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3613473	3L_3613473_INS [dm3] 3L_3613473_INS [dm6]	A	ATCCGGAGAGT...	4.938e^-4	1	INTRON CG10359
3R	10031156	3R_10031156_SNP [dm3] 3R_14205434_SNP [dm6]	G	A	4.954e^-4	1	INTRON Dop1R1
2R	17078719	2R_17078719_SNP [dm3] 2R_21191214_SNP [dm6]	A	G	4.954e^-4	1	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5976404	2R_5976404_SNP [dm3] 2R_10088899_SNP [dm6]	G	A	4.960e^-4	1	INTRON CG2269
3L	6001348	3L_6001348_SNP [dm3] 3L_6008248_SNP [dm6]	T	C	4.967e^-4	1	INTRON PVRAP
2L	6111942	2L_6111942_SNP [dm3] 2L_6111942_SNP [dm6]	C	G	4.969e^-4	1	INTRON stai
3R	14467156	3R_14467156_SNP [dm3] 3R_18641434_SNP [dm6]	A	C	4.972e^-4	1	START_GAINED CG14301 UTR_5_PRIME CG14301 INTRON qin	TF binding site BDTNP1_TFBS_z
3R	17991136	3R_17991136_INS [dm3] 3R_22165414_INS [dm6]	G	ATTT	4.972e^-4	1	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13716175	2R_13716175_SNP [dm3] 2R_17828670_SNP [dm6]	T	A	4.978e^-4	1	INTRON grh
3L	11221587	3L_11221587_SNP [dm3] 3L_11228487_SNP [dm6]	T	G	4.984e^-4	1	UTR_3_PRIME CG42671 INTRON CG42671	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	16421528	2R_16421528_SNP [dm3] 2R_20534023_SNP [dm6]	C	T	4.998e^-4	1	UPSTREAM CG18067 DOWNSTREAM CG30154 INTERGENIC
3L	10937369	3L_10937369_SNP [dm3] 3L_10944269_SNP [dm6]	C	A	5.015e^-4	1	UPSTREAM CG34050 INTERGENIC
3L	960520	3L_960520_SNP [dm3] 3L_960520_SNP [dm6]	A	G	5.020e^-4	1	INTRON Glut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
3L	13266692	3L_13266692_SNP [dm3] 3L_13273592_SNP [dm6]	A	G	5.022e^-4	1	INTRON caps
X	10088607	X_10088607_SNP [dm3] X_10194574_SNP [dm6]	G	A	5.024e^-4	1	UTR_3_PRIME CG43902 INTRON CR44894
3L	13198605	3L_13198605_INS [dm3] 3L_13205505_INS [dm6]	G	GGA	5.028e^-4	1	INTERGENIC
3R	19492275	3R_19492275_SNP [dm3] 3R_23666553_SNP [dm6]	A	T	5.031e^-4	1	INTRON CG31145	TF binding site mE1_TFBS_inv
3L	3784732	3L_3784732_SNP [dm3] 3L_3784732_SNP [dm6]	C	T	5.034e^-4	1	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	8971035	X_8971035_SNP [dm3] X_9077002_SNP [dm6]	G	C	5.039e^-4	1	INTRON CG44325	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6361916	2R_6361916_SNP [dm3] 2R_10474411_SNP [dm6]	A	G	5.041e^-4	1	INTRON whd
3R	15307378	3R_15307378_SNP [dm3] 3R_19481656_SNP [dm6]	G	A	5.047e^-4	1	SYNONYMOUS_CODING Dys
3L	8735173	3L_8735173_SNP [dm3] 3L_8742073_SNP [dm6]	G	A	5.051e^-4	1	INTRON Prm
2R	12035674	2R_12035674_SNP [dm3] 2R_16148169_SNP [dm6]	G	C	5.074e^-4	1	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_sens
3L	10995549	3L_10995549_SNP [dm3] 3L_11002449_SNP [dm6]	C	T	5.077e^-4	1	UPSTREAM snoRNA:Me18S-G962 INTRON klu
3L	2133516	3L_2133516_SNP [dm3] 3L_2133516_SNP [dm6]	A	T	5.086e^-4	1	INTRON zormin
2L	7370100	2L_7370100_SNP [dm3] 2L_7370100_SNP [dm6]	T	C	5.112e^-4	1	SYNONYMOUS_CODING Wnt10 INTRON CR44063
2R	12343588	2R_12343588_SNP [dm3] 2R_16456083_SNP [dm6]	G	A	5.114e^-4	1	INTERGENIC
2L	7860078	2L_7860078_SNP [dm3] 2L_7860078_SNP [dm6]	T	A	5.117e^-4	1	UTR_3_PRIME lectin-28C INTRON TwdlE	TF binding site BDTNP1_TFBS_twi
3L	3487496	3L_3487496_SNP [dm3] 3L_3487496_SNP [dm6]	G	A	5.121e^-4	1	INTRON CG42324
2L	12546780	2L_12546780_SNP [dm3] 2L_12546780_SNP [dm6]	G	A	5.124e^-4	1	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7944574	3L_7944574_SNP [dm3] 3L_7951474_SNP [dm6]	G	A	5.127e^-4	1	UTR_3_PRIME exex
2R	18570372	2R_18570372_SNP [dm3] 2R_22682867_SNP [dm6]	T	G	5.128e^-4	1	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	15682498	X_15682498_SNP [dm3] X_15788465_SNP [dm6]	T	A	5.134e^-4	1	UPSTREAM Rhp DOWNSTREAM mRpS30 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10488900	3L_10488900_SNP [dm3] 3L_10495800_SNP [dm6]	A	G	5.138e^-4	1	INTRON A2bp1
3R	24205532	3R_24205532_SNP [dm3] 3R_28379810_SNP [dm6]	T	G	5.139e^-4	1	INTERGENIC
3L	4110035	3L_4110035_SNP [dm3] 3L_4110035_SNP [dm6]	G	A	5.145e^-4	1	INTRON Ack	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	14483394	X_14483394_SNP [dm3] X_14589361_SNP [dm6]	T	A	5.148e^-4	1	INTRON CG9413
3L	3122564	3L_3122564_SNP [dm3] 3L_3122564_SNP [dm6]	A	G	5.169e^-4	1	UPSTREAM tRNA:CR32273 INTRON prominin-like
2L	8391407	2L_8391407_SNP [dm3] 2L_8391407_SNP [dm6]	T	A	5.169e^-4	1	SYNONYMOUS_CODING CG42820
2L	20606892	2L_20606892_SNP [dm3] 2L_20606892_SNP [dm6]	A	T	5.172e^-4	1	DOWNSTREAM CR43608 INTRON CR44909
3L	12966054	3L_12966054_SNP [dm3] 3L_12972954_SNP [dm6]	C	A	5.181e^-4	1	SYNONYMOUS_CODING CG10749 UPSTREAM CG10748
3R	14869014	3R_14869014_SNP [dm3] 3R_19043292_SNP [dm6]	T	G	5.182e^-4	1	SYNONYMOUS_CODING CG6026	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3457720	X_3457720_SNP [dm3] X_3563687_SNP [dm6]	T	C	5.190e^-4	1	INTRON CG32791 & 1 other
2L	16372991	2L_16372991_SNP [dm3] 2L_16372991_SNP [dm6]	A	G	5.193e^-4	1	INTERGENIC
X	5675166	X_5675166_SNP [dm3] X_5781133_SNP [dm6]	G	T	5.198e^-4	1	NON_SYNONYMOUS_CODING CG3108 INTRON CG42699	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16436820	2R_16436820_SNP [dm3] 2R_20549315_SNP [dm6]	G	C	5.200e^-4	1	UTR_5_PRIME Obp57d UTR_3_PRIME Cpr57A DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	8966113	3R_8966113_INS [dm3] 3R_13140391_INS [dm6]	T	TATATCACATATATCACATA...	5.202e^-4	1	INTRON timeout & 2 others
2L	5867202	2L_5867202_SNP [dm3] 2L_5867202_SNP [dm6]	C	T	5.206e^-4	1	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sens
X	2999308	X_2999308_SNP [dm3] X_3105275_SNP [dm6]	A	T	5.207e^-4	1	INTRON kirre
2L	21325748	2L_21325748_SNP [dm3] 2L_21325748_SNP [dm6]	A	T	5.207e^-4	1	UPSTREAM CR42696 INTERGENIC
2R	8566496	2R_8566496_SNP [dm3] 2R_12678991_SNP [dm6]	C	T	5.218e^-4	1	DOWNSTREAM CG8771 INTRON CG42708
3L	9495933	3L_9495933_SNP [dm3] 3L_9502833_SNP [dm6]	G	A	5.223e^-4	1	INTRON path	TF binding site BDTNP1_TFBS_twi
2L	16162617	2L_16162617_SNP [dm3] 2L_16162617_SNP [dm6]	T	G	5.231e^-4	1	INTERGENIC
3L	13145353	3L_13145353_SNP [dm3] 3L_13152253_SNP [dm6]	G	C	5.233e^-4	1	INTERGENIC
3R	18411266	3R_18411266_SNP [dm3] 3R_22585544_SNP [dm6]	C	T	5.234e^-4	1	SYNONYMOUS_CODING CG6937 UPSTREAM CG33107 DOWNSTREAM btn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	24567627	3R_24567627_SNP [dm3] 3R_28741905_SNP [dm6]	C	T	5.244e^-4	1	INTRON AstA-R2
3L	4062489	3L_4062489_SNP [dm3] 3L_4062489_SNP [dm6]	A	G	5.254e^-4	1	SYNONYMOUS_CODING dib DOWNSTREAM CG18869	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7297381	2L_7297381_SNP [dm3] 2L_7297381_SNP [dm6]	C	G	5.265e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16907265	3L_16907265_SNP [dm3] 3L_16914165_SNP [dm6]	T	G	5.270e^-4	1	INTRON Lmpt
2R	7883694	2R_7883694_SNP [dm3] 2R_11996189_SNP [dm6]	A	G	5.279e^-4	1	UPSTREAM CR45319 EXON CR45318
2L	3565786	2L_3565786_SNP [dm3] 2L_3565786_SNP [dm6]	T	C	5.289e^-4	1	INTERGENIC
X	19994545	X_19994545_SNP [dm3] X_20100512_SNP [dm6]	C	T	5.289e^-4	1	INTERGENIC	transposable element FlyBase
3R	24026831	3R_24026831_SNP [dm3] 3R_28201109_SNP [dm6]	A	C	5.292e^-4	1	INTRON CG34354
3L	15728578	3L_15728578_SNP [dm3] 3L_15735478_SNP [dm6]	A	T	5.293e^-4	1	INTERGENIC
2R	7441124	2R_7441124_SNP [dm3] 2R_11553619_SNP [dm6]	A	T	5.300e^-4	1	INTERGENIC
3R	26455937	3R_26455937_SNP [dm3] 3R_30630215_SNP [dm6]	G	T	5.301e^-4	1	INTERGENIC
2L	2558247	2L_2558247_SNP [dm3] 2L_2558247_SNP [dm6]	C	G	5.322e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15606087	3L_15606087_SNP [dm3] 3L_15612987_SNP [dm6]	A	T	5.324e^-4	1	UPSTREAM CG13449 DOWNSTREAM comm3 INTERGENIC
2L	7086433	2L_7086433_SNP [dm3] 2L_7086433_SNP [dm6]	G	C	5.327e^-4	1	INTERGENIC
2L	20598171	2L_20598171_SNP [dm3] 2L_20598171_SNP [dm6]	G	T	5.331e^-4	1	INTRON CR44909
3L	5788596	3L_5788596_DEL [dm3] 3L_5795496_DEL [dm6]	AA	A	5.334e^-4	1	INTRON Tektin-C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13907567	2R_13907567_SNP [dm3] 2R_18020062_SNP [dm6]	T	G	5.334e^-4	1	UTR_3_PRIME CG5084 UPSTREAM CG10910 DOWNSTREAM CG5084
2L	16468341	2L_16468341_SNP [dm3] 2L_16468341_SNP [dm6]	A	C	5.340e^-4	1	INTRON dac	TF binding site mE1_TFBS_HSA
2L	6482581	2L_6482581_SNP [dm3] 2L_6482581_SNP [dm6]	C	G	5.350e^-4	1	NON_SYNONYMOUS_CODING DLP	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	3160687	2L_3160687_SNP [dm3] 2L_3160687_SNP [dm6]	C	T	5.352e^-4	1	SYNONYMOUS_CODING gkt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	11276278	X_11276278_DEL [dm3] X_11382245_DEL [dm6]	CC	C	5.352e^-4	1	INTRON dlg1
2L	9846308	2L_9846308_SNP [dm3] 2L_9846308_SNP [dm6]	A	G	5.362e^-4	1	INTRON nAChRalpha6
3L	20044798	3L_20044798_SNP [dm3] 3L_20051698_SNP [dm6]	C	T	5.377e^-4	1	INTERGENIC
3R	4272468	3R_4272468_SNP [dm3] 3R_8446746_SNP [dm6]	A	T	5.386e^-4	1	INTRON CG45263
2L	13950814	2L_13950814_SNP [dm3] 2L_13950814_SNP [dm6]	A	G	5.400e^-4	1	INTRON Ance-3
2R	16686860	2R_16686860_SNP [dm3] 2R_20799355_SNP [dm6]	G	A	5.408e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9930041	2L_9930041_SNP [dm3] 2L_9930041_SNP [dm6]	A	G	5.422e^-4	1	UTR_3_PRIME CG42366 UPSTREAM CG42367 INTRON CG42366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10477475	2L_10477475_SNP [dm3] 2L_10477475_SNP [dm6]	T	C	5.424e^-4	1	SYNONYMOUS_CODING RluA-2	TF binding site mE1_TFBS_ttk
2L	7295057	2L_7295057_SNP [dm3] 2L_7295057_SNP [dm6]	A	G	5.429e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16957481	2R_16957481_SNP [dm3] 2R_21069976_SNP [dm6]	T	G	5.439e^-4	1	UPSTREAM Cht9 & 1 other DOWNSTREAM CG10527 & 1 other INTERGENIC
3L	3811131	3L_3811131_SNP [dm3] 3L_3811131_SNP [dm6]	G	T	5.451e^-4	1	UPSTREAM CG32262 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	19989325	2R_19989325_SNP [dm3] 2R_24101802_SNP [dm6]	G	A	5.454e^-4	1	SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8111822	3L_8111822_SNP [dm3] 3L_8118722_SNP [dm6]	A	T	5.458e^-4	1	INTRON msk
3L	8111882	3L_8111882_SNP [dm3] 3L_8118782_SNP [dm6]	C	T	5.458e^-4	1	SYNONYMOUS_CODING msk
3R	19070181	3R_19070181_SNP [dm3] 3R_23244459_SNP [dm6]	G	A	5.463e^-4	1	INTRON CG4467
2R	10112270	2R_10112270_INS [dm3] 2R_14224765_INS [dm6]	G	GAAG	5.470e^-4	1	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	842665	2L_842665_INS [dm3] 2L_842665_INS [dm6]	A	AGGGATTGGGA...	5.480e^-4	1	UTR_5_PRIME drongo INTRON drongo
2L	16588442	2L_16588442_SNP [dm3] 2L_16588442_SNP [dm6]	A	G	5.482e^-4	1	INTRON CG42389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	18411099	3R_18411099_SNP [dm3] 3R_22585377_SNP [dm6]	T	G	5.484e^-4	1	SPLICE_SITE_REGION CG6937 UPSTREAM CG33107 DOWNSTREAM btn INTRON CG6937	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	4638403	3L_4638403_SNP [dm3] 3L_4638403_SNP [dm6]	C	G	5.485e^-4	1	INTRON axo
3L	2401774	3L_2401774_SNP [dm3] 3L_2401774_SNP [dm6]	G	A	5.489e^-4	1	INTRON CG45186
3L	15503576	3L_15503576_SNP [dm3] 3L_15510476_SNP [dm6]	C	G	5.493e^-4	1	UPSTREAM Eip71CD DOWNSTREAM Z600 INTRON gdl-ORF39 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	15689793	2R_15689793_SNP [dm3] 2R_19802288_SNP [dm6]	G	T	5.505e^-4	1	UPSTREAM tRNA:K2:56EF INTERGENIC
3L	3577113	3L_3577113_SNP [dm3] 3L_3577113_SNP [dm6]	T	A	5.510e^-4	1	INTRON Eip63E
2R	17514312	2R_17514312_SNP [dm3] 2R_21626807_SNP [dm6]	T	A	5.510e^-4	1	INTRON mahj
2R	11792382	2R_11792382_SNP [dm3] 2R_15904877_SNP [dm6]	G	A	5.524e^-4	1	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3L	5735001	3L_5735001_SNP [dm3] 3L_5741901_SNP [dm6]	G	A	5.557e^-4	1	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo
3L	3589126	3L_3589126_SNP [dm3] 3L_3589126_SNP [dm6]	G	A	5.566e^-4	1	INTRON Eip63E
3R	14016053	3R_14016053_SNP [dm3] 3R_18190331_SNP [dm6]	G	A	5.570e^-4	1	SYNONYMOUS_CODING MED17 DOWNSTREAM CG14313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1819239	2L_1819239_SNP [dm3] 2L_1819239_SNP [dm6]	T	A	5.571e^-4	1	INTERGENIC
2L	11189346	2L_11189346_SNP [dm3] 2L_11189346_SNP [dm6]	C	T	5.587e^-4	1	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10983275	3L_10983275_SNP [dm3] 3L_10990175_SNP [dm6]	A	G	5.603e^-4	1	INTRON klu
3R	18411115	3R_18411115_SNP [dm3] 3R_22585393_SNP [dm6]	C	A	5.605e^-4	1	UPSTREAM CG33107 DOWNSTREAM btn INTRON CG6937	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	8966116	3R_8966116_SNP [dm3] 3R_13140394_SNP [dm6]	A	C	5.611e^-4	1	INTRON timeout & 2 others
2L	6482546	2L_6482546_SNP [dm3] 2L_6482546_SNP [dm6]	C	A	5.615e^-4	1	SYNONYMOUS_CODING DLP	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	14437341	3L_14437341_SNP [dm3] 3L_14444241_SNP [dm6]	G	A	5.635e^-4	1	INTRON bbg
2R	5307825	2R_5307825_SNP [dm3] 2R_9420320_SNP [dm6]	T	C	5.642e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	16421407	2R_16421407_SNP [dm3] 2R_20533902_SNP [dm6]	A	C	5.642e^-4	1	UTR_3_PRIME CG30154 UPSTREAM CG18067 DOWNSTREAM CR44651
3R	24573270	3R_24573270_SNP [dm3] 3R_28747548_SNP [dm6]	A	G	5.646e^-4	1	DOWNSTREAM CG10000 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	24577366	3R_24577366_SNP [dm3] 3R_28751644_SNP [dm6]	G	A	5.651e^-4	1	UTR_5_PRIME CG10000
2R	6852243	2R_6852243_SNP [dm3] 2R_10964738_SNP [dm6]	A	G	5.652e^-4	1	INTERGENIC
2R	18569724	2R_18569724_SNP [dm3] 2R_22682219_SNP [dm6]	A	G	5.667e^-4	1	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2562640	2L_2562640_SNP [dm3] 2L_2562640_SNP [dm6]	G	A	5.671e^-4	1	UTR_3_PRIME Cyp309a1 DOWNSTREAM Cyp309a1
2L	11254042	2L_11254042_SNP [dm3] 2L_11254042_SNP [dm6]	G	T	5.672e^-4	1	INTRON ab
3L	5338886	3L_5338886_SNP [dm3] 3L_5345786_SNP [dm6]	A	G	5.678e^-4	1	INTRON lama
2L	13606357	2L_13606357_SNP [dm3] 2L_13606357_SNP [dm6]	A	G	5.680e^-4	1	INTRON kuz
3R	25701768	3R_25701768_SNP [dm3] 3R_29876046_SNP [dm6]	A	G	5.693e^-4	1	DOWNSTREAM CG34133 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	10684522	2L_10684522_SNP [dm3] 2L_10684522_SNP [dm6]	A	G	5.700e^-4	1	UPSTREAM CG7299 INTERGENIC
2R	11738107	2R_11738107_SNP [dm3] 2R_15850602_SNP [dm6]	T	G	5.706e^-4	1	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
3L	11597956	3L_11597956_SNP [dm3] 3L_11604856_SNP [dm6]	G	A	5.734e^-4	1	UTR_3_PRIME CG7368 DOWNSTREAM CG6091
3L	13075476	3L_13075476_SNP [dm3] 3L_13082376_SNP [dm6]	A	G	5.734e^-4	1	EXON CR43652	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	4001388	3L_4001388_INS [dm3] 3L_4001388_INS [dm6]	A	AA	5.748e^-4	1	INTERGENIC
X	6158968	X_6158968_INS [dm3] X_6264935_INS [dm6]	A	ATA	5.753e^-4	1	INTRON schlank	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21920258	2L_21920258_SNP [dm3] 2L_21920258_SNP [dm6]	C	T	5.765e^-4	1	UTR_3_PRIME CG11634
3R	22828152	3R_22828152_SNP [dm3] 3R_27002430_SNP [dm6]	C	G	5.769e^-4	1	NON_SYNONYMOUS_CODING CG31077 DOWNSTREAM CG6296 INTRON RYa-R
3R	19069734	3R_19069734_SNP [dm3] 3R_23244012_SNP [dm6]	C	T	5.769e^-4	1	INTRON CG4467
2L	12264759	2L_12264759_SNP [dm3] 2L_12264759_SNP [dm6]	A	G	5.775e^-4	1	INTRON aret
2R	17078720	2R_17078720_SNP [dm3] 2R_21191215_SNP [dm6]	A	C	5.775e^-4	1	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13046418	2R_13046418_DEL [dm3] 2R_17158913_DEL [dm6]	TTT	T	5.791e^-4	1	UPSTREAM CG17287 INTRON CG30458	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24600900	3R_24600900_SNP [dm3] 3R_28775178_SNP [dm6]	T	G	5.792e^-4	1	INTERGENIC
2R	18570359	2R_18570359_INS [dm3] 2R_22682854_INS [dm6]	GT	CCTC	5.792e^-4	1	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	4261534	2L_4261534_SNP [dm3] 2L_4261534_SNP [dm6]	T	C	5.792e^-4	1	UPSTREAM CR44080 INTERGENIC
2L	11203823	2L_11203823_SNP [dm3] 2L_11203823_SNP [dm6]	T	G	5.804e^-4	1	UPSTREAM Ca-beta INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24207712	3R_24207712_SNP [dm3] 3R_28381990_SNP [dm6]	C	T	5.812e^-4	1	INTERGENIC
2R	14007940	2R_14007940_SNP [dm3] 2R_18120435_SNP [dm6]	G	A	5.815e^-4	1	INTRON stau	TF binding site mE1_TFBS_cad
3L	10463495	3L_10463495_SNP [dm3] 3L_10470395_SNP [dm6]	A	C	5.823e^-4	1	INTERGENIC
3R	20272920	3R_20272920_SNP [dm3] 3R_24447198_SNP [dm6]	T	C	5.836e^-4	1	INTRON nAChRalpha1
3R	9948169	3R_9948169_SNP [dm3] 3R_14122447_SNP [dm6]	A	G	5.848e^-4	1	UPSTREAM twf & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	17411284	2L_17411284_SNP [dm3] 2L_17411284_SNP [dm6]	C	A	5.868e^-4	1	SYNONYMOUS_CODING CG15141 UPSTREAM Rpb11 DOWNSTREAM CG31803	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	6986485	2R_6986485_SNP [dm3] 2R_11098980_SNP [dm6]	C	T	5.874e^-4	1	INTRON luna
3L	6292451	3L_6292451_SNP [dm3] 3L_6299351_SNP [dm6]	T	A	5.884e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2510808	2L_2510808_SNP [dm3] 2L_2510808_SNP [dm6]	C	A	5.887e^-4	1	INTERGENIC
3R	17717086	3R_17717086_SNP [dm3] 3R_21891364_SNP [dm6]	G	C	5.893e^-4	1	INTRON CG6678
3R	23501613	3R_23501613_SNP [dm3] 3R_27675891_SNP [dm6]	A	G	5.900e^-4	1	INTRON unc80	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3960545	3L_3960545_SNP [dm3] 3L_3960545_SNP [dm6]	G	T	5.904e^-4	1	UPSTREAM CG12605 INTRON CG12605
3L	3691255	3L_3691255_SNP [dm3] 3L_3691255_SNP [dm6]	C	T	5.904e^-4	1	INTERGENIC
3L	11786806	3L_11786806_SNP [dm3] 3L_11793706_SNP [dm6]	T	C	5.907e^-4	1	SYNONYMOUS_CODING CG10907 UPSTREAM CG5964	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	5278385	3L_5278385_SNP [dm3] 3L_5285285_SNP [dm6]	C	A	5.911e^-4	1	INTERGENIC
2L	7299948	2L_7299948_DEL [dm3] 2L_7299948_DEL [dm6]	GT	G	5.911e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10088952	3L_10088952_SNP [dm3] 3L_10095852_SNP [dm6]	C	T	5.923e^-4	1	NON_SYNONYMOUS_CODING CG42825 INTRON dpr6
2L	9378511	2L_9378511_SNP [dm3] 2L_9378511_SNP [dm6]	C	A	5.943e^-4	1	INTRON Shawl
3L	14036162	3L_14036162_SNP [dm3] 3L_14043062_SNP [dm6]	A	T	5.964e^-4	1	NON_SYNONYMOUS_CODING Hsc70Cb DOWNSTREAM blue	TF binding site mE1_TFBS_cad
2L	4527887	2L_4527887_SNP [dm3] 2L_4527887_SNP [dm6]	G	T	5.965e^-4	1	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	1994519	3R_1994519_SNP [dm3] 3R_6168797_SNP [dm6]	T	A	5.968e^-4	1	INTRON CG1077
2R	9904226	2R_9904226_SNP [dm3] 2R_14016721_SNP [dm6]	A	G	5.972e^-4	1	INTRON mam
3R	14467812	3R_14467812_SNP [dm3] 3R_18642090_SNP [dm6]	A	G	5.976e^-4	1	UPSTREAM CG14301 INTRON qin	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	6001363	3L_6001363_SNP [dm3] 3L_6008263_SNP [dm6]	T	A	5.996e^-4	1	INTRON PVRAP
2R	9488661	2R_9488661_SNP [dm3] 2R_13601156_SNP [dm6]	T	A	6.000e^-4	1	UPSTREAM CG43058 INTERGENIC
3R	17865649	3R_17865649_SNP [dm3] 3R_22039927_SNP [dm6]	T	C	6.017e^-4	1	INTERGENIC
3L	10193033	3L_10193033_SNP [dm3] 3L_10199933_SNP [dm6]	C	A	6.020e^-4	1	INTRON ect
X	11281125	X_11281125_SNP [dm3] X_11387092_SNP [dm6]	C	T	6.022e^-4	1	INTRON dlg1
3L	14115478	3L_14115478_SNP [dm3] 3L_14122378_SNP [dm6]	A	G	6.031e^-4	1	INTRON Sox21b	TF binding site BDTNP1_TFBS_dl
3R	19488020	3R_19488020_SNP [dm3] 3R_23662298_SNP [dm6]	C	A	6.034e^-4	1	INTRON CG31145	TF binding site mE1_TFBS_HSA
3R	4094869	3R_4094869_SNP [dm3] 3R_8269147_SNP [dm6]	G	A	6.038e^-4	1	SYNONYMOUS_CODING CG9630	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	16420895	2R_16420895_SNP [dm3] 2R_20533390_SNP [dm6]	T	C	6.040e^-4	1	UTR_5_PRIME CG30154 UPSTREAM CG18067 DOWNSTREAM CR44651	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	20603388	2L_20603388_SNP [dm3] 2L_20603388_SNP [dm6]	C	T	6.058e^-4	1	DOWNSTREAM CG31677 INTRON CR44909
3R	22095645	3R_22095645_SNP [dm3] 3R_26269923_SNP [dm6]	G	C	6.065e^-4	1	INTRON CG6154
2L	4749113	2L_4749113_SNP [dm3] 2L_4749113_SNP [dm6]	G	A	6.073e^-4	1	INTRON CG15630
3L	4619440	3L_4619440_SNP [dm3] 3L_4619440_SNP [dm6]	A	T	6.075e^-4	1	INTRON Src64B
2L	5864395	2L_5864395_SNP [dm3] 2L_5864395_SNP [dm6]	C	A	6.077e^-4	1	INTRON rau
3R	18181061	3R_18181061_SNP [dm3] 3R_22355339_SNP [dm6]	A	T	6.079e^-4	1	INTRON rdhB	TF binding site mE1_TFBS_cad
2L	7294615	2L_7294615_SNP [dm3] 2L_7294615_SNP [dm6]	C	T	6.081e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	8112984	3L_8112984_SNP [dm3] 3L_8119884_SNP [dm6]	T	A	6.084e^-4	1	INTRON msk
2R	19676396	2R_19676396_SNP [dm3] 2R_23788873_SNP [dm6]	T	A	6.088e^-4	1	INTRON CG9850	TF binding site mE1_TFBS_HSA
2L	13346923	2L_13346923_SNP [dm3] 2L_13346923_SNP [dm6]	C	G	6.089e^-4	1	UPSTREAM CG16826 INTERGENIC

By genomic position
Variant impact
Gene name

mn_Resp_2_PhenylEthy phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results