DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.596e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.03208

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.9384	0.0513

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2643 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	3973974	3R_3973974_SNP [dm3] 3R_8148252_SNP [dm6]	T	C	2.545e^-8	0.048	UTR_3_PRIME grn
3L	9257788	3L_9257788_SNP [dm3] 3L_9264688_SNP [dm6]	C	T	4.460e^-7	0.413	INTRON GluRIB
2L	5856685	2L_5856685_SNP [dm3] 2L_5856685_SNP [dm6]	T	A	7.651e^-7	0.413	UTR_3_PRIME TrissinR
3L	5140285	3L_5140285_SNP [dm3] 3L_5147185_SNP [dm6]	G	A	1.380e^-6	0.413	SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	17684915	3L_17684915_SNP [dm3] 3L_17691815_SNP [dm6]	A	G	1.449e^-6	0.413	INTRON Ccn
2L	2447270	2L_2447270_SNP [dm3] 2L_2447270_SNP [dm6]	C	T	1.757e^-6	0.413	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
3L	9260825	3L_9260825_INS [dm3] 3L_9267725_INS [dm6]	T	TTTTCATGCAT...	2.087e^-6	0.413	INTRON GluRIB
3L	19236677	3L_19236677_SNP [dm3] 3L_19243577_SNP [dm6]	C	T	2.136e^-6	0.413	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16240641	2R_16240641_SNP [dm3] 2R_20353136_SNP [dm6]	C	A	2.228e^-6	0.413	DOWNSTREAM CG11192 INTERGENIC
3R	15648435	3R_15648435_SNP [dm3] 3R_19822713_SNP [dm6]	C	T	2.647e^-6	0.413	INTRON bnl	TF binding site mE1_TFBS_HSA
3L	4701541	3L_4701541_SNP [dm3] 3L_4701541_SNP [dm6]	A	G	2.833e^-6	0.413	INTRON RhoGEF64C
3L	5140468	3L_5140468_SNP [dm3] 3L_5147368_SNP [dm6]	G	A	3.141e^-6	0.413	SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	19220699	3L_19220699_SNP [dm3] 3L_19227599_SNP [dm6]	C	T	3.445e^-6	0.413	INTRON fz2
X	10416648	X_10416648_SNP [dm3] X_10522615_SNP [dm6]	A	G	3.477e^-6	0.413	INTRON spri
3L	5140192	3L_5140192_SNP [dm3] 3L_5147092_SNP [dm6]	C	T	4.267e^-6	0.413	INTRON Aats-ala-m	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_sens
3L	2810142	3L_2810142_SNP [dm3] 3L_2810142_SNP [dm6]	G	A	4.374e^-6	0.413	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	18038165	3L_18038165_DEL [dm3] 3L_18045065_DEL [dm6]	TGGCGTGACTTTGTGTCAAT...	T	4.434e^-6	0.413	DOWNSTREAM CG42393 INTRON Eip75B
3R	17178087	3R_17178087_SNP [dm3] 3R_21352365_SNP [dm6]	T	C	4.466e^-6	0.413	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
2R	16240823	2R_16240823_SNP [dm3] 2R_20353318_SNP [dm6]	C	A	4.534e^-6	0.413	DOWNSTREAM CG11192 INTERGENIC
3R	22985601	3R_22985601_SNP [dm3] 3R_27159879_SNP [dm6]	C	G	4.591e^-6	0.413	DOWNSTREAM grass INTERGENIC
3R	22991813	3R_22991813_SNP [dm3] 3R_27166091_SNP [dm6]	G	A	5.035e^-6	0.413	SYNONYMOUS_CODING spn-D UPSTREAM CG34293 DOWNSTREAM ppk31	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	17178090	3R_17178090_DEL [dm3] 3R_21352368_DEL [dm6]	CCATAGCC	TT	5.339e^-6	0.413	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
3L	4701581	3L_4701581_SNP [dm3] 3L_4701581_SNP [dm6]	A	T	5.345e^-6	0.413	INTRON RhoGEF64C
3L	9257319	3L_9257319_SNP [dm3] 3L_9264219_SNP [dm6]	A	G	5.705e^-6	0.413	INTRON GluRIB
3L	19235933	3L_19235933_DEL [dm3] 3L_19242833_DEL [dm6]	GG	G	5.710e^-6	0.413	INTERGENIC
3R	13568788	3R_13568788_SNP [dm3] 3R_17743066_SNP [dm6]	G	T	5.729e^-6	0.413	INTRON TyrRII
3R	11576004	3R_11576004_SNP [dm3] 3R_15750282_SNP [dm6]	T	G	6.721e^-6	0.438	INTERGENIC
2R	8790198	2R_8790198_SNP [dm3] 2R_12902693_SNP [dm6]	A	C	6.794e^-6	0.438	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	7337642	3R_7337642_DEL [dm3] 3R_11511920_DEL [dm6]	AA	A	6.813e^-6	0.438	INTERGENIC
2R	6603812	2R_6603812_SNP [dm3] 2R_10716307_SNP [dm6]	A	G	7.005e^-6	0.438	SYNONYMOUS_CODING stan
X	18453557	X_18453557_SNP [dm3] X_18559524_SNP [dm6]	T	A	7.814e^-6	0.464	INTRON Bx
2L	3598767	2L_3598767_SNP [dm3] 2L_3598767_SNP [dm6]	T	A	7.924e^-6	0.464	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18517368	2L_18517368_DEL [dm3] 2L_18517368_DEL [dm6]	CC	C	8.654e^-6	0.485	UPSTREAM CG10211 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	17178058	3R_17178058_SNP [dm3] 3R_21352336_SNP [dm6]	A	G	8.964e^-6	0.485	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
3L	1697260	3L_1697260_SNP [dm3] 3L_1697260_SNP [dm6]	A	G	9.908e^-6	0.485	DOWNSTREAM CG12011 INTRON CG7991
2R	16240552	2R_16240552_SNP [dm3] 2R_20353047_SNP [dm6]	T	A	1.032e^-5	0.485	INTERGENIC
3L	3695574	3L_3695574_SNP [dm3] 3L_3695574_SNP [dm6]	T	C	1.037e^-5	0.485	INTERGENIC
3L	9257335	3L_9257335_SNP [dm3] 3L_9264235_SNP [dm6]	T	C	1.095e^-5	0.485	INTRON GluRIB
X	2967488	X_2967488_SNP [dm3] X_3073455_SNP [dm6]	C	T	1.105e^-5	0.485	INTRON kirre
2R	16240549	2R_16240549_SNP [dm3] 2R_20353044_SNP [dm6]	C	A	1.134e^-5	0.485	INTERGENIC
3R	26945281	3R_26945281_SNP [dm3] 3R_31119559_SNP [dm6]	C	T	1.164e^-5	0.485	INTERGENIC
3L	16531253	3L_16531253_SNP [dm3] 3L_16538153_SNP [dm6]	C	T	1.174e^-5	0.485	INTRON CG43373
3L	16422783	3L_16422783_SNP [dm3] 3L_16429683_SNP [dm6]	A	G	1.176e^-5	0.485	INTRON CG33158 & 1 other
3L	19236703	3L_19236703_SNP [dm3] 3L_19243603_SNP [dm6]	T	C	1.190e^-5	0.485	INTERGENIC	TF binding site mE1_TFBS_cad
3L	19235876	3L_19235876_SNP [dm3] 3L_19242776_SNP [dm6]	C	A	1.214e^-5	0.485	INTERGENIC
3L	1030099	3L_1030099_SNP [dm3] 3L_1030099_SNP [dm6]	T	A	1.264e^-5	0.485	INTRON trio
3R	26129562	3R_26129562_SNP [dm3] 3R_30303840_SNP [dm6]	T	A	1.411e^-5	0.485	INTRON hdc
2L	7025374	2L_7025374_SNP [dm3] 2L_7025374_SNP [dm6]	G	A	1.452e^-5	0.485	SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
3R	1936657	3R_1936657_SNP [dm3] 3R_6110935_SNP [dm6]	T	A	1.484e^-5	0.485	DOWNSTREAM Obp83g INTRON Obp83ef
3R	15648374	3R_15648374_SNP [dm3] 3R_19822652_SNP [dm6]	G	A	1.512e^-5	0.485	INTRON bnl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13763673	2R_13763673_INS [dm3] 2R_17876168_INS [dm6]	T	TC	1.514e^-5	0.485	INTRON Elk
3R	19015766	3R_19015766_SNP [dm3] 3R_23190044_SNP [dm6]	A	T	1.536e^-5	0.485	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	3695581	3L_3695581_SNP [dm3] 3L_3695581_SNP [dm6]	G	T	1.538e^-5	0.485	INTERGENIC
3R	23652110	3R_23652110_SNP [dm3] 3R_27826388_SNP [dm6]	A	C	1.560e^-5	0.485	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	23652134	3R_23652134_SNP [dm3] 3R_27826412_SNP [dm6]	G	C	1.560e^-5	0.485	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	26945279	3R_26945279_SNP [dm3] 3R_31119557_SNP [dm6]	C	A	1.604e^-5	0.485	INTERGENIC
3R	25930742	3R_25930742_INS [dm3] 3R_30105020_INS [dm6]	G	GAG	1.627e^-5	0.485	INTRON sima
3R	22986490	3R_22986490_INS [dm3] 3R_27160768_INS [dm6]	C	TT	1.627e^-5	0.485	UPSTREAM CG5909 DOWNSTREAM grass INTERGENIC
X	10416660	X_10416660_SNP [dm3] X_10522627_SNP [dm6]	C	G	1.631e^-5	0.485	INTRON spri
3L	4636082	3L_4636082_SNP [dm3] 3L_4636082_SNP [dm6]	T	A	1.659e^-5	0.485	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
2R	12270752	2R_12270752_SNP [dm3] 2R_16383247_SNP [dm6]	T	C	1.686e^-5	0.485	UTR_3_PRIME CG43187	transposable element FlyBase
2L	1149407	2L_1149407_SNP [dm3] 2L_1149407_SNP [dm6]	A	G	1.700e^-5	0.485	UTR_3_PRIME CG4749 DOWNSTREAM Tfb4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1889010	3R_1889010_SNP [dm3] 3R_6063288_SNP [dm6]	G	T	1.735e^-5	0.485	INTERGENIC
2L	3553785	2L_3553785_SNP [dm3] 2L_3553785_SNP [dm6]	T	A	1.755e^-5	0.485	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10416647	X_10416647_SNP [dm3] X_10522614_SNP [dm6]	G	A	1.760e^-5	0.485	INTRON spri
3R	19015825	3R_19015825_SNP [dm3] 3R_23190103_SNP [dm6]	T	C	1.810e^-5	0.485	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	3599670	3L_3599670_SNP [dm3] 3L_3599670_SNP [dm6]	T	C	1.839e^-5	0.485	INTRON Eip63E
3R	1908418	3R_1908418_SNP [dm3] 3R_6082696_SNP [dm6]	G	A	1.848e^-5	0.485	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	17178027	3R_17178027_SNP [dm3] 3R_21352305_SNP [dm6]	T	G	1.862e^-5	0.485	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
2R	3612540	2R_3612540_SNP [dm3] 2R_7725035_SNP [dm6]	A	T	1.885e^-5	0.485	INTRON CG18812
2L	3553787	2L_3553787_SNP [dm3] 2L_3553787_SNP [dm6]	T	C	1.891e^-5	0.485	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16240590	2R_16240590_SNP [dm3] 2R_20353085_SNP [dm6]	T	A	1.899e^-5	0.485	INTERGENIC
2L	1596307	2L_1596307_SNP [dm3] 2L_1596307_SNP [dm6]	G	A	1.922e^-5	0.485	SYNONYMOUS_CODING CG31935 INTRON haf	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5694207	X_5694207_SNP [dm3] X_5800174_SNP [dm6]	T	G	1.933e^-5	0.485	INTERGENIC
3L	11392296	3L_11392296_SNP [dm3] 3L_11399196_SNP [dm6]	G	A	2.030e^-5	0.485	INTERGENIC
3L	19227847	3L_19227847_SNP [dm3] 3L_19234747_SNP [dm6]	A	G	2.051e^-5	0.485	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10051784	3R_10051784_SNP [dm3] 3R_14226062_SNP [dm6]	T	C	2.061e^-5	0.485	NON_SYNONYMOUS_CODING CG9631	TF binding site mE1_TFBS_cad
3L	2810144	3L_2810144_SNP [dm3] 3L_2810144_SNP [dm6]	A	T	2.078e^-5	0.485	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	3627684	3L_3627684_SNP [dm3] 3L_3627684_SNP [dm6]	G	T	2.091e^-5	0.485	INTRON dar1	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	9040609	3L_9040609_SNP [dm3] 3L_9047509_SNP [dm6]	T	C	2.113e^-5	0.485	NON_SYNONYMOUS_CODING CG5144	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_ttk
X	10431608	X_10431608_SNP [dm3] X_10537575_SNP [dm6]	G	A	2.222e^-5	0.485	INTRON spri	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14852038	2R_14852038_SNP [dm3] 2R_18964533_SNP [dm6]	T	C	2.239e^-5	0.485	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4696780	3L_4696780_SNP [dm3] 3L_4696780_SNP [dm6]	C	T	2.245e^-5	0.485	UPSTREAM CG13713 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	17178047	3R_17178047_SNP [dm3] 3R_21352325_SNP [dm6]	C	T	2.289e^-5	0.485	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
3R	3862100	3R_3862100_SNP [dm3] 3R_8036378_SNP [dm6]	C	G	2.305e^-5	0.485	SYNONYMOUS_CODING unc-45
3L	14595876	3L_14595876_SNP [dm3] 3L_14602776_SNP [dm6]	C	T	2.395e^-5	0.485	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	8581406	3L_8581406_SNP [dm3] 3L_8588306_SNP [dm6]	G	C	2.399e^-5	0.485	NON_SYNONYMOUS_CODING CG43078	TF binding site mE1_TFBS_chinmo
3R	24428597	3R_24428597_SNP [dm3] 3R_28602875_SNP [dm6]	T	A	2.422e^-5	0.485	SYNONYMOUS_CODING Hrb98DE UPSTREAM snoRNA:Psi28S-3305c DOWNSTREAM snoRNA:Psi28S-3405b & 3 others
3R	1940685	3R_1940685_SNP [dm3] 3R_6114963_SNP [dm6]	A	C	2.492e^-5	0.485	INTERGENIC
3L	2628044	3L_2628044_SNP [dm3] 3L_2628044_SNP [dm6]	T	G	2.502e^-5	0.485	INTRON Pxn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	13821597	3R_13821597_SNP [dm3] 3R_17995875_SNP [dm6]	G	T	2.528e^-5	0.485	INTRON cpo
2R	15940764	2R_15940764_SNP [dm3] 2R_20053259_SNP [dm6]	C	A	2.536e^-5	0.485	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3L	16090739	3L_16090739_SNP [dm3] 3L_16097639_SNP [dm6]	C	A	2.547e^-5	0.485	UPSTREAM ms_3_72Dt & 1 other INTERGENIC
2R	17150108	2R_17150108_INS [dm3] 2R_21262603_INS [dm6]	C	CGGGCC	2.608e^-5	0.485	INTRON Rgk3
X	18452574	X_18452574_SNP [dm3] X_18558541_SNP [dm6]	A	G	2.620e^-5	0.485	INTRON Bx
3R	1936866	3R_1936866_SNP [dm3] 3R_6111144_SNP [dm6]	T	A	2.629e^-5	0.485	UPSTREAM Obp83ef DOWNSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
3R	17178023	3R_17178023_SNP [dm3] 3R_21352301_SNP [dm6]	G	C	2.677e^-5	0.485	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
2R	6632095	2R_6632095_SNP [dm3] 2R_10744590_SNP [dm6]	A	G	2.689e^-5	0.485	INTRON CG33144
3R	23652019	3R_23652019_SNP [dm3] 3R_27826297_SNP [dm6]	C	T	2.695e^-5	0.485	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10452063	2L_10452063_SNP [dm3] 2L_10452063_SNP [dm6]	C	A	2.721e^-5	0.485	DOWNSTREAM CG5322 INTRON ppk10
2L	6844320	2L_6844320_SNP [dm3] 2L_6844320_SNP [dm6]	T	C	2.843e^-5	0.485	INTERGENIC
3R	27171452	3R_27171452_SNP [dm3] 3R_31345730_SNP [dm6]	G	A	2.855e^-5	0.485	INTRON CG34347	TF binding site mE1_TFBS_chinmo
2R	9153142	2R_9153142_SNP [dm3] 2R_13265637_SNP [dm6]	G	T	2.872e^-5	0.485	UTR_3_PRIME CG42319
2L	10825583	2L_10825583_SNP [dm3] 2L_10825583_SNP [dm6]	A	T	2.941e^-5	0.485	INTRON Nos
3L	17678020	3L_17678020_SNP [dm3] 3L_17684920_SNP [dm6]	C	T	2.958e^-5	0.485	INTERGENIC
3L	19269024	3L_19269024_SNP [dm3] 3L_19275924_SNP [dm6]	G	A	2.961e^-5	0.485	UTR_5_PRIME CG14086
X	8832675	X_8832675_SNP [dm3] X_8938642_SNP [dm6]	T	A	2.966e^-5	0.485	INTRON rdgA
3R	18651305	3R_18651305_SNP [dm3] 3R_22825583_SNP [dm6]	C	A	2.980e^-5	0.485	EXON CR44350
3L	1029977	3L_1029977_SNP [dm3] 3L_1029977_SNP [dm6]	A	T	2.986e^-5	0.485	INTRON trio
3L	4689735	3L_4689735_SNP [dm3] 3L_4689735_SNP [dm6]	C	G	3.023e^-5	0.485	SYNONYMOUS_CODING CG18418 UPSTREAM CG7514	TF binding site mE1_TFBS_HSA
2R	4674421	2R_4674421_SNP [dm3] 2R_8786916_SNP [dm6]	A	C	3.044e^-5	0.485	INTERGENIC
3R	1934454	3R_1934454_SNP [dm3] 3R_6108732_SNP [dm6]	C	A	3.074e^-5	0.485	DOWNSTREAM Obp83ef INTRON Obp83cd
3L	17574797	3L_17574797_SNP [dm3] 3L_17581697_SNP [dm6]	A	C	3.084e^-5	0.485	INTRON Eip74EF
2R	4188722	2R_4188722_SNP [dm3] 2R_8301217_SNP [dm6]	C	T	3.084e^-5	0.485	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11016118	3L_11016118_SNP [dm3] 3L_11023018_SNP [dm6]	T	C	3.092e^-5	0.485	UPSTREAM Fad2 INTERGENIC	TF binding site mE1_TFBS_cad
X	8776588	X_8776588_SNP [dm3] X_8882555_SNP [dm6]	T	C	3.119e^-5	0.485	UPSTREAM Moe INTRON Moe
3L	16419514	3L_16419514_SNP [dm3] 3L_16426414_SNP [dm6]	C	G	3.130e^-5	0.485	INTRON CG33158 & 1 other
2R	4673796	2R_4673796_SNP [dm3] 2R_8786291_SNP [dm6]	C	T	3.149e^-5	0.485	INTERGENIC
X	8776606	X_8776606_SNP [dm3] X_8882573_SNP [dm6]	T	A	3.160e^-5	0.485	UPSTREAM Moe INTRON Moe
2L	2167526	2L_2167526_SNP [dm3] 2L_2167526_SNP [dm6]	T	A	3.207e^-5	0.485	INTRON aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19015826	3R_19015826_SNP [dm3] 3R_23190104_SNP [dm6]	T	A	3.224e^-5	0.485	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	10107991	X_10107991_DEL [dm3] X_10213958_DEL [dm6]	TACAAACAAGT...	T	3.231e^-5	0.485	DOWNSTREAM CG2962 INTRON l_1_G0230	TF binding site mE1_TFBS_sens
3L	17685436	3L_17685436_SNP [dm3] 3L_17692336_SNP [dm6]	C	G	3.232e^-5	0.485	INTRON Ccn
3R	17177993	3R_17177993_INS [dm3] 3R_21352271_INS [dm6]	A	AA	3.275e^-5	0.485	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
2R	8796025	2R_8796025_SNP [dm3] 2R_12908520_SNP [dm6]	T	A	3.319e^-5	0.485	INTERGENIC
3R	15599529	3R_15599529_SNP [dm3] 3R_19773807_SNP [dm6]	A	G	3.422e^-5	0.485	UPSTREAM CG6300 INTRON GluClalpha	TF binding site mE1_TFBS_bab1
3R	15599531	3R_15599531_INS [dm3] 3R_19773809_INS [dm6]	A	AC	3.422e^-5	0.485	UPSTREAM CG6300 INTRON GluClalpha	TF binding site mE1_TFBS_bab1
2L	5376629	2L_5376629_SNP [dm3] 2L_5376629_SNP [dm6]	A	G	3.446e^-5	0.485	INTERGENIC
X	3059523	X_3059523_SNP [dm3] X_3165490_SNP [dm6]	G	A	3.451e^-5	0.485	SYNONYMOUS_CODING N	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16090736	3L_16090736_SNP [dm3] 3L_16097636_SNP [dm6]	A	T	3.462e^-5	0.485	UPSTREAM ms_3_72Dt & 1 other INTERGENIC
3L	16531244	3L_16531244_SNP [dm3] 3L_16538144_SNP [dm6]	A	T	3.483e^-5	0.485	INTRON CG43373
X	10416688	X_10416688_SNP [dm3] X_10522655_SNP [dm6]	A	T	3.486e^-5	0.485	INTRON spri
3R	8073961	3R_8073961_SNP [dm3] 3R_12248239_SNP [dm6]	G	T	3.489e^-5	0.485	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	7905145	2L_7905145_SNP [dm3] 2L_7905145_SNP [dm6]	T	A	3.556e^-5	0.485	INTRON Snoo	TF binding site mE1_TFBS_chinmo
3L	4701564	3L_4701564_SNP [dm3] 3L_4701564_SNP [dm6]	A	T	3.585e^-5	0.485	INTRON RhoGEF64C
3R	14308191	3R_14308191_INS [dm3] 3R_18482469_INS [dm6]	A	AA	3.599e^-5	0.485	INTRON fru
X	17524499	X_17524499_SNP [dm3] X_17630466_SNP [dm6]	T	G	3.605e^-5	0.485	NON_SYNONYMOUS_CODING CG8316 UPSTREAM CG8326	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2285109	X_2285109_SNP [dm3] X_2391076_SNP [dm6]	C	G	3.610e^-5	0.485	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	4670093	2L_4670093_SNP [dm3] 2L_4670093_SNP [dm6]	G	A	3.705e^-5	0.485	INTERGENIC
X	5694178	X_5694178_SNP [dm3] X_5800145_SNP [dm6]	A	T	3.719e^-5	0.485	INTERGENIC
X	13812428	X_13812428_SNP [dm3] X_13918395_SNP [dm6]	G	C	3.753e^-5	0.485	INTRON mamo
X	11103489	X_11103489_SNP [dm3] X_11209456_SNP [dm6]	G	T	3.796e^-5	0.485	INTERGENIC
2L	8605508	2L_8605508_SNP [dm3] 2L_8605508_SNP [dm6]	A	G	3.804e^-5	0.485	INTRON Sema-1a
3L	17685618	3L_17685618_INS [dm3] 3L_17692518_INS [dm6]	A	AG	3.848e^-5	0.485	INTRON Ccn
2L	3665423	2L_3665423_SNP [dm3] 2L_3665423_SNP [dm6]	T	C	3.854e^-5	0.485	INTRON CG34340
2R	4677050	2R_4677050_SNP [dm3] 2R_8789545_SNP [dm6]	G	A	3.859e^-5	0.485	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	17688512	3L_17688512_SNP [dm3] 3L_17695412_SNP [dm6]	C	G	3.898e^-5	0.485	INTRON Ccn
2L	3553776	2L_3553776_SNP [dm3] 2L_3553776_SNP [dm6]	T	A	3.898e^-5	0.485	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26945255	3R_26945255_SNP [dm3] 3R_31119533_SNP [dm6]	A	G	3.927e^-5	0.485	INTERGENIC
3L	15396537	3L_15396537_SNP [dm3] 3L_15403437_SNP [dm6]	G	T	3.927e^-5	0.485	INTERGENIC
2L	15969520	2L_15969520_SNP [dm3] 2L_15969520_SNP [dm6]	A	C	3.929e^-5	0.485	INTERGENIC
X	8774250	X_8774250_INS [dm3] X_8880217_INS [dm6]	A	AT	3.958e^-5	0.485	INTRON Moe	TF binding site mE1_TFBS_inv
2L	9817519	2L_9817519_SNP [dm3] 2L_9817519_SNP [dm6]	G	T	3.973e^-5	0.485	INTRON nAChRalpha6
3R	17177971	3R_17177971_SNP [dm3] 3R_21352249_SNP [dm6]	C	T	3.994e^-5	0.485	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
2L	1336822	2L_1336822_SNP [dm3] 2L_1336822_SNP [dm6]	T	A	4.006e^-5	0.485	INTERGENIC	TF binding site mE1_TFBS_inv
3L	18032458	3L_18032458_SNP [dm3] 3L_18039358_SNP [dm6]	C	T	4.044e^-5	0.486	UPSTREAM CG32192 INTRON Eip75B
3R	4368737	3R_4368737_SNP [dm3] 3R_8543015_SNP [dm6]	A	G	4.092e^-5	0.488	INTERGENIC
2L	4670113	2L_4670113_SNP [dm3] 2L_4670113_SNP [dm6]	C	T	4.124e^-5	0.488	INTERGENIC
2R	4876356	2R_4876356_SNP [dm3] 2R_8988851_SNP [dm6]	C	T	4.136e^-5	0.488	INTERGENIC
3L	11392297	3L_11392297_SNP [dm3] 3L_11399197_SNP [dm6]	C	T	4.176e^-5	0.49	INTERGENIC
2L	3517254	2L_3517254_SNP [dm3] 2L_3517254_SNP [dm6]	A	G	4.335e^-5	0.505	UTR_3_PRIME CG17593 DOWNSTREAM CG3213 & 1 other	TF binding site mE1_TFBS_cad
2R	19511494	2R_19511494_SNP [dm3] 2R_23623971_SNP [dm6]	T	G	4.368e^-5	0.505	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_disco
3R	1880974	3R_1880974_SNP [dm3] 3R_6055252_SNP [dm6]	T	C	4.412e^-5	0.505	SYNONYMOUS_CODING CG15580
2L	3553779	2L_3553779_SNP [dm3] 2L_3553779_SNP [dm6]	A	G	4.420e^-5	0.505	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13808371	2L_13808371_SNP [dm3] 2L_13808371_SNP [dm6]	C	T	4.497e^-5	0.506	UTR_3_PRIME adat INTRON CAH1
3L	12133134	3L_12133134_SNP [dm3] 3L_12140034_SNP [dm6]	A	T	4.497e^-5	0.506	UTR_5_PRIME RhoGAP68F
3R	17424525	3R_17424525_SNP [dm3] 3R_21598803_SNP [dm6]	A	C	4.516e^-5	0.506	INTRON InR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10472521	3L_10472521_INS [dm3] 3L_10479421_INS [dm6]	G	GTG	4.529e^-5	0.506	INTERGENIC
2R	15034536	2R_15034536_SNP [dm3] 2R_19147031_SNP [dm6]	C	G	4.627e^-5	0.514	INTRON ena
X	10427673	X_10427673_SNP [dm3] X_10533640_SNP [dm6]	G	A	4.722e^-5	0.521	INTRON spri
3R	5961143	3R_5961143_SNP [dm3] 3R_10135421_SNP [dm6]	C	G	4.818e^-5	0.524	UPSTREAM tws INTRON tws	TF binding site BDTNP1_TFBS_da
X	9859066	X_9859066_SNP [dm3] X_9965033_SNP [dm6]	G	T	4.897e^-5	0.524	UPSTREAM CG1889 & 1 other INTERGENIC
X	9859089	X_9859089_SNP [dm3] X_9965056_SNP [dm6]	T	A	4.897e^-5	0.524	UPSTREAM CG1889 & 1 other INTERGENIC
3R	6852352	3R_6852352_SNP [dm3] 3R_11026630_SNP [dm6]	C	T	4.925e^-5	0.524	INTRON CG34114
2R	15465243	2R_15465243_SNP [dm3] 2R_19577738_SNP [dm6]	T	C	4.946e^-5	0.524	INTRON sm
3R	26131482	3R_26131482_INS [dm3] 3R_30305760_INS [dm6]	C	CC	4.959e^-5	0.524	DOWNSTREAM CG34300 INTRON hdc
3L	10239909	3L_10239909_SNP [dm3] 3L_10246809_SNP [dm6]	C	T	4.984e^-5	0.524	DOWNSTREAM CR44540 EXON CR44539	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
X	10426286	X_10426286_SNP [dm3] X_10532253_SNP [dm6]	G	A	4.992e^-5	0.524	INTRON spri
3R	10852417	3R_10852417_SNP [dm3] 3R_15026695_SNP [dm6]	C	A	5.144e^-5	0.524	INTERGENIC
3L	9260611	3L_9260611_SNP [dm3] 3L_9267511_SNP [dm6]	T	C	5.146e^-5	0.524	INTRON GluRIB
X	10416659	X_10416659_SNP [dm3] X_10522626_SNP [dm6]	A	G	5.168e^-5	0.524	INTRON spri
3R	25187133	3R_25187133_SNP [dm3] 3R_29361411_SNP [dm6]	A	G	5.187e^-5	0.524	INTERGENIC
3R	10200704	3R_10200704_SNP [dm3] 3R_14374982_SNP [dm6]	T	G	5.195e^-5	0.524	DOWNSTREAM CR44943 INTERGENIC
3L	16531305	3L_16531305_SNP [dm3] 3L_16538205_SNP [dm6]	C	T	5.208e^-5	0.524	INTRON CG43373
2R	9441644	2R_9441644_DEL [dm3] 2R_13554139_DEL [dm6]	AA	A	5.236e^-5	0.524	UTR_5_PRIME Roe1 UPSTREAM CG33156	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens
X	5303073	X_5303073_SNP [dm3] X_5409040_SNP [dm6]	C	T	5.351e^-5	0.524	INTRON NAAT1	TF binding site BDTNP1_TFBS_twi
3L	812598	3L_812598_SNP [dm3] 3L_812598_SNP [dm6]	C	G	5.375e^-5	0.524	UPSTREAM CR44537 INTERGENIC
2R	19198369	2R_19198369_SNP [dm3] 2R_23310846_SNP [dm6]	C	T	5.377e^-5	0.524	INTERGENIC
2R	19111501	2R_19111501_SNP [dm3] 2R_23223978_SNP [dm6]	G	A	5.398e^-5	0.524	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	6603803	2R_6603803_SNP [dm3] 2R_10716298_SNP [dm6]	T	C	5.426e^-5	0.524	SYNONYMOUS_CODING stan
3L	11013236	3L_11013236_DEL [dm3] 3L_11020136_DEL [dm6]	CC	C	5.435e^-5	0.524	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5376632	2L_5376632_SNP [dm3] 2L_5376632_SNP [dm6]	G	C	5.440e^-5	0.524	INTERGENIC
2L	4670119	2L_4670119_SNP [dm3] 2L_4670119_SNP [dm6]	A	G	5.465e^-5	0.524	INTERGENIC
3R	27148910	3R_27148910_SNP [dm3] 3R_31323188_SNP [dm6]	G	A	5.517e^-5	0.524	INTRON CG34347
X	3348755	X_3348755_SNP [dm3] X_3454722_SNP [dm6]	A	C	5.528e^-5	0.524	INTRON CR44999
3L	9261767	3L_9261767_SNP [dm3] 3L_9268667_SNP [dm6]	T	A	5.556e^-5	0.524	INTRON GluRIB
2R	13419350	2R_13419350_SNP [dm3] 2R_17531845_SNP [dm6]	A	T	5.563e^-5	0.524	INTRON Patronin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19325192	2R_19325192_SNP [dm3] 2R_23437669_SNP [dm6]	A	G	5.572e^-5	0.524	INTERGENIC
2R	9667866	2R_9667866_SNP [dm3] 2R_13780361_SNP [dm6]	T	C	5.583e^-5	0.524	UPSTREAM S-Lap7 INTRON Cpr50Ca
3R	17747579	3R_17747579_SNP [dm3] 3R_21921857_SNP [dm6]	A	G	5.600e^-5	0.524	INTERGENIC
3R	1940608	3R_1940608_SNP [dm3] 3R_6114886_SNP [dm6]	A	G	5.619e^-5	0.524	INTERGENIC
3R	18651179	3R_18651179_SNP [dm3] 3R_22825457_SNP [dm6]	C	T	5.670e^-5	0.526	EXON CR44350
3L	4790638	3L_4790638_SNP [dm3] 3L_4790638_SNP [dm6]	G	A	5.728e^-5	0.526	SYNONYMOUS_CODING RhoGEF64C	TF binding site mE1_TFBS_chinmo
3L	10997025	3L_10997025_SNP [dm3] 3L_11003925_SNP [dm6]	C	G	5.765e^-5	0.526	INTRON klu
2R	18052034	2R_18052034_SNP [dm3] 2R_22164529_SNP [dm6]	G	C	5.768e^-5	0.526	SYNONYMOUS_CODING CG34206 INTRON a
2L	3433452	2L_3433452_INS [dm3] 2L_3433452_INS [dm6]	T	TT	5.777e^-5	0.526	INTERGENIC
3R	26945115	3R_26945115_SNP [dm3] 3R_31119393_SNP [dm6]	G	A	5.810e^-5	0.526	INTERGENIC
3L	9263055	3L_9263055_DEL [dm3] 3L_9269955_DEL [dm6]	AT	G	5.837e^-5	0.526	INTRON GluRIB
X	18452730	X_18452730_SNP [dm3] X_18558697_SNP [dm6]	A	G	5.909e^-5	0.527	INTRON Bx
3R	22519992	3R_22519992_SNP [dm3] 3R_26694270_SNP [dm6]	A	G	5.915e^-5	0.527	UPSTREAM TwdlQ INTERGENIC
X	10009270	X_10009270_SNP [dm3] X_10115237_SNP [dm6]	T	G	5.948e^-5	0.527	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	5339493	3R_5339493_SNP [dm3] 3R_9513771_SNP [dm6]	T	C	5.958e^-5	0.527	SYNONYMOUS_CODING Rlb1 UPSTREAM Ras85D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	20683419	2L_20683419_SNP [dm3] 2L_20683419_SNP [dm6]	C	T	6.039e^-5	0.53	UTR_3_PRIME CG2617 DOWNSTREAM Hr38	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	336730	2L_336730_SNP [dm3] 2L_336730_SNP [dm6]	A	G	6.063e^-5	0.53	INTRON Plc21C
3R	13570849	3R_13570849_SNP [dm3] 3R_17745127_SNP [dm6]	C	T	6.076e^-5	0.53	NON_SYNONYMOUS_CODING TyrRII	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4137893	3R_4137893_SNP [dm3] 3R_8312171_SNP [dm6]	G	A	6.106e^-5	0.53	UPSTREAM CG11698 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9223983	2L_9223983_SNP [dm3] 2L_9223983_SNP [dm6]	C	T	6.155e^-5	0.53	INTRON tai	TF binding site mE1_TFBS_Kr mE1_TFBS_Trl
X	9859087	X_9859087_SNP [dm3] X_9965054_SNP [dm6]	G	A	6.193e^-5	0.53	UPSTREAM CG1889 & 1 other INTERGENIC
3L	9260831	3L_9260831_SNP [dm3] 3L_9267731_SNP [dm6]	G	C	6.202e^-5	0.53	INTRON GluRIB
2R	15476371	2R_15476371_SNP [dm3] 2R_19588866_SNP [dm6]	A	T	6.276e^-5	0.53	INTRON sm
2L	4453133	2L_4453133_SNP [dm3] 2L_4453133_SNP [dm6]	C	T	6.306e^-5	0.53	UPSTREAM CG15439 DOWNSTREAM CG15440 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26116810	3R_26116810_SNP [dm3] 3R_30291088_SNP [dm6]	T	A	6.306e^-5	0.53	INTRON hdc
2L	3924259	2L_3924259_SNP [dm3] 2L_3924259_SNP [dm6]	A	T	6.344e^-5	0.53	INTRON fred
3L	11392299	3L_11392299_SNP [dm3] 3L_11399199_SNP [dm6]	C	A	6.352e^-5	0.53	INTERGENIC
3R	1949440	3R_1949440_SNP [dm3] 3R_6123718_SNP [dm6]	C	A	6.428e^-5	0.53	UTR_3_PRIME Vha14-2 DOWNSTREAM Vha14-2
3L	4689699	3L_4689699_SNP [dm3] 3L_4689699_SNP [dm6]	C	T	6.448e^-5	0.53	SYNONYMOUS_CODING CG18418 UPSTREAM CG7514	TF binding site mE1_TFBS_HSA
3R	1878662	3R_1878662_SNP [dm3] 3R_6052940_SNP [dm6]	A	C	6.448e^-5	0.53	DOWNSTREAM CR44921 INTERGENIC
3R	25856790	3R_25856790_SNP [dm3] 3R_30031068_SNP [dm6]	T	G	6.456e^-5	0.53	INTRON Axn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12060640	3L_12060640_SNP [dm3] 3L_12067540_SNP [dm6]	G	T	6.497e^-5	0.53	UTR_3_PRIME Sema-5c DOWNSTREAM Sema-5c	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	9257075	3L_9257075_SNP [dm3] 3L_9263975_SNP [dm6]	A	G	6.511e^-5	0.53	INTRON GluRIB
2L	2716071	2L_2716071_SNP [dm3] 2L_2716071_SNP [dm6]	A	G	6.531e^-5	0.53	INTRON CG31690
X	8776585	X_8776585_SNP [dm3] X_8882552_SNP [dm6]	A	G	6.633e^-5	0.53	UPSTREAM Moe INTRON Moe
X	8776608	X_8776608_SNP [dm3] X_8882575_SNP [dm6]	C	T	6.636e^-5	0.53	UPSTREAM Moe INTRON Moe
X	2896493	X_2896493_SNP [dm3] X_3002460_SNP [dm6]	T	A	6.646e^-5	0.53	INTRON kirre
3L	18491555	3L_18491555_SNP [dm3] 3L_18498455_SNP [dm6]	C	A	6.653e^-5	0.53	INTRON AstC-R2
3L	4689241	3L_4689241_SNP [dm3] 3L_4689241_SNP [dm6]	C	T	6.690e^-5	0.53	NON_SYNONYMOUS_CODING CG18418 UPSTREAM CG7514
X	20796627	X_20796627_SNP [dm3] X_20925600_SNP [dm6]	C	A	6.699e^-5	0.53	UPSTREAM shakB INTRON shakB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16566992	2R_16566992_SNP [dm3] 2R_20679487_SNP [dm6]	A	G	6.721e^-5	0.53	INTERGENIC
2L	4661304	2L_4661304_SNP [dm3] 2L_4661304_SNP [dm6]	C	T	6.747e^-5	0.53	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	1142756	2L_1142756_INS [dm3] 2L_1142756_INS [dm6]	G	GCTG	6.853e^-5	0.532	UPSTREAM CR45717 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	19292382	3L_19292382_SNP [dm3] 3L_19299282_SNP [dm6]	A	T	6.912e^-5	0.532	DOWNSTREAM fal INTRON pip
3L	661787	3L_661787_SNP [dm3] 3L_661787_SNP [dm6]	G	A	6.937e^-5	0.532	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	10604352	2L_10604352_SNP [dm3] 2L_10604352_SNP [dm6]	A	T	6.938e^-5	0.532	INTRON Trim9	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12133554	3L_12133554_INS [dm3] 3L_12140454_INS [dm6]	T	TATGAAAT	6.988e^-5	0.532	INTRON RhoGAP68F
3L	18036842	3L_18036842_SNP [dm3] 3L_18043742_SNP [dm6]	G	C	6.989e^-5	0.532	UTR_3_PRIME CG42393 INTRON Eip75B
3R	27148897	3R_27148897_SNP [dm3] 3R_31323175_SNP [dm6]	T	A	7.005e^-5	0.532	INTRON CG34347
3L	19235313	3L_19235313_SNP [dm3] 3L_19242213_SNP [dm6]	T	A	7.006e^-5	0.532	INTERGENIC
3R	1890832	3R_1890832_SNP [dm3] 3R_6065110_SNP [dm6]	A	T	7.074e^-5	0.535	INTERGENIC
3R	26119777	3R_26119777_SNP [dm3] 3R_30294055_SNP [dm6]	C	G	7.180e^-5	0.541	INTRON hdc	TF binding site BDTNP1_TFBS_dl
3R	1895263	3R_1895263_SNP [dm3] 3R_6069541_SNP [dm6]	A	C	7.225e^-5	0.542	INTERGENIC
3R	20992109	3R_20992109_SNP [dm3] 3R_25166387_SNP [dm6]	A	T	7.316e^-5	0.545	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10009261	X_10009261_SNP [dm3] X_10115228_SNP [dm6]	T	A	7.319e^-5	0.545	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	19198371	2R_19198371_SNP [dm3] 2R_23310848_SNP [dm6]	T	A	7.411e^-5	0.547	INTERGENIC
2R	6808873	2R_6808873_SNP [dm3] 2R_10921368_SNP [dm6]	G	C	7.423e^-5	0.547	INTERGENIC
X	10418031	X_10418031_SNP [dm3] X_10523998_SNP [dm6]	T	C	7.454e^-5	0.547	INTRON spri
3R	22991424	3R_22991424_SNP [dm3] 3R_27165702_SNP [dm6]	A	G	7.484e^-5	0.547	UPSTREAM spn-D & 1 other DOWNSTREAM ppk31 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3L	10436971	3L_10436971_SNP [dm3] 3L_10443871_SNP [dm6]	A	G	7.515e^-5	0.547	INTERGENIC
3L	13085438	3L_13085438_SNP [dm3] 3L_13092338_SNP [dm6]	C	A	7.541e^-5	0.547	INTERGENIC
3R	14803757	3R_14803757_SNP [dm3] 3R_18978035_SNP [dm6]	A	T	7.554e^-5	0.547	UTR_3_PRIME CG42613 DOWNSTREAM CG12269 & 1 other
3R	22985605	3R_22985605_SNP [dm3] 3R_27159883_SNP [dm6]	T	C	7.583e^-5	0.547	DOWNSTREAM grass INTERGENIC
2R	17684654	2R_17684654_DEL [dm3] 2R_21797149_DEL [dm6]	AA	A	7.723e^-5	0.555	DOWNSTREAM CG34204 & 1 other INTERGENIC
X	3202872	X_3202872_SNP [dm3] X_3308839_SNP [dm6]	G	A	7.776e^-5	0.556	INTRON dnc
2L	10602880	2L_10602880_SNP [dm3] 2L_10602880_SNP [dm6]	A	C	7.802e^-5	0.556	INTRON Trim9
3L	11951012	3L_11951012_SNP [dm3] 3L_11957912_SNP [dm6]	A	T	7.828e^-5	0.556	UPSTREAM CG43294 & 1 other DOWNSTREAM prc INTERGENIC
3L	8710580	3L_8710580_SNP [dm3] 3L_8717480_SNP [dm6]	A	T	7.948e^-5	0.563	INTERGENIC
2R	12329091	2R_12329091_SNP [dm3] 2R_16441586_SNP [dm6]	C	T	7.990e^-5	0.563	INTERGENIC
3L	8581631	3L_8581631_SNP [dm3] 3L_8588531_SNP [dm6]	A	G	8.074e^-5	0.566	SYNONYMOUS_CODING CG43078	TF binding site mE1_TFBS_chinmo
3L	17685726	3L_17685726_SNP [dm3] 3L_17692626_SNP [dm6]	C	T	8.147e^-5	0.566	INTRON Ccn
3R	26951317	3R_26951317_DEL [dm3] 3R_31125595_DEL [dm6]	TTAAAAAT	GG	8.157e^-5	0.566	UPSTREAM CG15554 INTERGENIC
3R	15599774	3R_15599774_SNP [dm3] 3R_19774052_SNP [dm6]	A	T	8.175e^-5	0.566	UPSTREAM CG6300 INTRON GluClalpha	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	20992126	3R_20992126_SNP [dm3] 3R_25166404_SNP [dm6]	T	A	8.179e^-5	0.566	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15688933	3L_15688933_SNP [dm3] 3L_15695833_SNP [dm6]	G	A	8.212e^-5	0.566	INTERGENIC
2L	4096783	2L_4096783_SNP [dm3] 2L_4096783_SNP [dm6]	T	C	8.240e^-5	0.566	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13900959	3R_13900959_SNP [dm3] 3R_18075237_SNP [dm6]	A	G	8.403e^-5	0.572	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10009263	X_10009263_SNP [dm3] X_10115230_SNP [dm6]	T	A	8.404e^-5	0.572	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	9104350	3L_9104350_SNP [dm3] 3L_9111250_SNP [dm6]	T	C	8.434e^-5	0.572	INTRON bol
2R	16241021	2R_16241021_SNP [dm3] 2R_20353516_SNP [dm6]	T	A	8.539e^-5	0.572	DOWNSTREAM CG11192 INTERGENIC
2L	8704267	2L_8704267_SNP [dm3] 2L_8704267_SNP [dm6]	A	G	8.552e^-5	0.572	INTRON Hnf4 EXON CR44992
3R	16690106	3R_16690106_SNP [dm3] 3R_20864384_SNP [dm6]	T	A	8.590e^-5	0.572	INTRON CG3822
3R	15599621	3R_15599621_SNP [dm3] 3R_19773899_SNP [dm6]	G	A	8.619e^-5	0.572	UPSTREAM CG6300 INTRON GluClalpha	TF binding site mE1_TFBS_bab1
2R	14417831	2R_14417831_SNP [dm3] 2R_18530326_SNP [dm6]	T	A	8.638e^-5	0.572	INTRON CG10924	TF binding site BDTNP1_TFBS_twi
3R	1981521	3R_1981521_DEL [dm3] 3R_6155799_DEL [dm6]	TA	T	8.664e^-5	0.572	INTRON CG31559
3L	18879273	3L_18879273_SNP [dm3] 3L_18886173_SNP [dm6]	T	C	8.686e^-5	0.572	INTRON CG3961
3L	11391924	3L_11391924_SNP [dm3] 3L_11398824_SNP [dm6]	T	A	8.696e^-5	0.572	DOWNSTREAM CG44362 INTERGENIC
2R	6453811	2R_6453811_SNP [dm3] 2R_10566306_SNP [dm6]	T	C	8.723e^-5	0.572	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	1331729	3L_1331729_SNP [dm3] 3L_1331729_SNP [dm6]	A	C	8.737e^-5	0.572	UPSTREAM msd1 DOWNSTREAM msd5 & 1 other INTERGENIC
2R	8796047	2R_8796047_SNP [dm3] 2R_12908542_SNP [dm6]	T	G	8.757e^-5	0.572	INTERGENIC
3L	1687817	3L_1687817_SNP [dm3] 3L_1687817_SNP [dm6]	G	T	8.836e^-5	0.574	UPSTREAM CG7991 INTRON CG7991
3L	5139951	3L_5139951_SNP [dm3] 3L_5146851_SNP [dm6]	T	A	8.870e^-5	0.574	SPLICE_SITE_REGION Aats-ala-m UPSTREAM CG10671 INTRON Aats-ala-m	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_sens
X	5954823	X_5954823_SNP [dm3] X_6060790_SNP [dm6]	C	G	8.886e^-5	0.574	SYNONYMOUS_CODING CG5921	TF binding site mE1_TFBS_chinmo
2L	3831189	2L_3831189_SNP [dm3] 2L_3831189_SNP [dm6]	G	A	8.903e^-5	0.574	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18451174	X_18451174_SNP [dm3] X_18557141_SNP [dm6]	T	G	8.959e^-5	0.575	INTRON Bx
2R	16725327	2R_16725327_SNP [dm3] 2R_20837822_SNP [dm6]	C	T	9.041e^-5	0.577	EXON CR44667	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	4115146	3L_4115146_SNP [dm3] 3L_4115146_SNP [dm6]	T	G	9.057e^-5	0.577	DOWNSTREAM Ack INTRON Chd64
X	5955606	X_5955606_SNP [dm3] X_6061573_SNP [dm6]	A	G	9.081e^-5	0.577	INTRON CG5921	TF binding site mE1_TFBS_chinmo
3R	20992138	3R_20992138_DEL [dm3] 3R_25166416_DEL [dm6]	GATAATTTAAAAACTTACAA...	G	9.271e^-5	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22993320	3R_22993320_SNP [dm3] 3R_27167598_SNP [dm6]	T	A	9.305e^-5	0.582	DOWNSTREAM spn-D INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3R	10365137	3R_10365137_SNP [dm3] 3R_14539415_SNP [dm6]	A	G	9.349e^-5	0.582	INTRON Pde6
3L	2733801	3L_2733801_SNP [dm3] 3L_2733801_SNP [dm6]	C	G	9.361e^-5	0.582	INTRON Mrtf
2R	4155546	2R_4155546_SNP [dm3] 2R_8268041_SNP [dm6]	G	A	9.364e^-5	0.582	SYNONYMOUS_CODING CG30371 UPSTREAM CG30375	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13632489	2L_13632489_SNP [dm3] 2L_13632489_SNP [dm6]	C	T	9.423e^-5	0.582	DOWNSTREAM CR43410 INTRON kuz
3R	12749971	3R_12749971_SNP [dm3] 3R_16924249_SNP [dm6]	T	G	9.443e^-5	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1602587	2L_1602587_SNP [dm3] 2L_1602587_SNP [dm6]	C	T	9.444e^-5	0.582	NON_SYNONYMOUS_CODING haf INTRON CG31935
3R	1882104	3R_1882104_SNP [dm3] 3R_6056382_SNP [dm6]	C	T	9.452e^-5	0.582	SYNONYMOUS_CODING CG15580
2L	3548482	2L_3548482_SNP [dm3] 2L_3548482_SNP [dm6]	A	T	9.500e^-5	0.582	DOWNSTREAM drm INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21288219	3R_21288219_SNP [dm3] 3R_25462497_SNP [dm6]	C	A	9.502e^-5	0.582	INTRON Fur1
3R	23745341	3R_23745341_SNP [dm3] 3R_27919619_SNP [dm6]	A	T	9.524e^-5	0.582	UPSTREAM CG33213 DOWNSTREAM CG12259 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	16566342	2R_16566342_SNP [dm3] 2R_20678837_SNP [dm6]	C	T	9.568e^-5	0.583	INTERGENIC
3R	8034703	3R_8034703_SNP [dm3] 3R_12208981_SNP [dm6]	C	A	9.674e^-5	0.585	SYNONYMOUS_CODING CG4830
2L	8731507	2L_8731507_SNP [dm3] 2L_8731507_SNP [dm6]	T	C	9.674e^-5	0.585	INTRON raw
3R	5940583	3R_5940583_SNP [dm3] 3R_10114861_SNP [dm6]	T	A	9.694e^-5	0.585	INTRON CG3940	TF binding site mE1_TFBS_HSA
2R	12153364	2R_12153364_SNP [dm3] 2R_16265859_SNP [dm6]	G	A	9.723e^-5	0.585	SPLICE_SITE_REGION csul INTRON csul
2R	6126889	2R_6126889_SNP [dm3] 2R_10239384_SNP [dm6]	T	A	9.810e^-5	0.587	UPSTREAM Hdc INTRON Hdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	18451410	X_18451410_SNP [dm3] X_18557377_SNP [dm6]	C	G	9.834e^-5	0.587	INTRON Bx
2L	1188923	2L_1188923_SNP [dm3] 2L_1188923_SNP [dm6]	G	A	9.879e^-5	0.588	INTRON CG5001
3L	9104303	3L_9104303_DEL [dm3] 3L_9111203_DEL [dm6]	TTTCTGTATAATTGCTCGAT...	T	9.917e^-5	0.589	INTRON bol
2R	14319262	2R_14319262_DEL [dm3] 2R_18431757_DEL [dm6]	AA	A	9.976e^-5	0.59	INTRON CG30118	TF binding site mE1_TFBS_chinmo
3R	19531355	3R_19531355_SNP [dm3] 3R_23705633_SNP [dm6]	T	C	1.007e^-4	0.593	SYNONYMOUS_CODING CG31414 DOWNSTREAM CR44052	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	19228175	3L_19228175_SNP [dm3] 3L_19235075_SNP [dm6]	G	A	1.010e^-4	0.593	UTR_5_PRIME fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	4678277	2R_4678277_SNP [dm3] 2R_8790772_SNP [dm6]	G	A	1.012e^-4	0.593	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	22991105	3R_22991105_SNP [dm3] 3R_27165383_SNP [dm6]	A	C	1.016e^-4	0.594	UPSTREAM spn-D DOWNSTREAM ppk31 INTRON CG34293	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2821682	3L_2821682_SNP [dm3] 3L_2821682_SNP [dm6]	G	C	1.021e^-4	0.595	UPSTREAM CG43444 INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	6851765	3R_6851765_SNP [dm3] 3R_11026043_SNP [dm6]	A	G	1.029e^-4	0.597	INTRON CG34114
X	2967800	X_2967800_SNP [dm3] X_3073767_SNP [dm6]	G	A	1.036e^-4	0.599	INTRON kirre
2R	19573963	2R_19573963_SNP [dm3] 2R_23686440_SNP [dm6]	C	T	1.041e^-4	0.599	UPSTREAM l_2_efl INTRON St3	TF binding site mE1_TFBS_cad
3L	10436972	3L_10436972_SNP [dm3] 3L_10443872_SNP [dm6]	C	A	1.044e^-4	0.599	INTERGENIC
3R	25738236	3R_25738236_SNP [dm3] 3R_29912514_SNP [dm6]	A	T	1.045e^-4	0.599	NON_SYNONYMOUS_CODING CG31036 DOWNSTREAM Capa
2L	3659799	2L_3659799_SNP [dm3] 2L_3659799_SNP [dm6]	A	T	1.049e^-4	0.6	INTERGENIC
3L	16217143	3L_16217143_SNP [dm3] 3L_16224043_SNP [dm6]	C	A	1.063e^-4	0.606	INTERGENIC
3L	9260810	3L_9260810_SNP [dm3] 3L_9267710_SNP [dm6]	C	A	1.066e^-4	0.606	INTRON GluRIB
3L	9260394	3L_9260394_SNP [dm3] 3L_9267294_SNP [dm6]	G	A	1.088e^-4	0.617	INTRON GluRIB
3R	17177965	3R_17177965_SNP [dm3] 3R_21352243_SNP [dm6]	T	A	1.092e^-4	0.617	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
3R	26943806	3R_26943806_INS [dm3] 3R_31118084_INS [dm6]	T	TT	1.097e^-4	0.618	INTERGENIC
3R	1940097	3R_1940097_DEL [dm3] 3R_6114375_DEL [dm6]	GTGAATGCAATTTTTGG...	G	1.101e^-4	0.618	INTERGENIC
3R	14297016	3R_14297016_SNP [dm3] 3R_18471294_SNP [dm6]	C	T	1.104e^-4	0.618	INTRON fru
X	3202877	X_3202877_SNP [dm3] X_3308844_SNP [dm6]	C	T	1.111e^-4	0.62	INTRON dnc
X	19583164	X_19583164_SNP [dm3] X_19689131_SNP [dm6]	T	G	1.117e^-4	0.622	UPSTREAM CG14227 DOWNSTREAM Mer INTERGENIC
3R	3147611	3R_3147611_SNP [dm3] 3R_7321889_SNP [dm6]	C	G	1.126e^-4	0.625	INTERGENIC
3R	4703557	3R_4703557_SNP [dm3] 3R_8877835_SNP [dm6]	A	T	1.142e^-4	0.63	INTRON pyd
3R	22983360	3R_22983360_SNP [dm3] 3R_27157638_SNP [dm6]	G	A	1.148e^-4	0.63	UPSTREAM grass DOWNSTREAM Men-b INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	27148906	3R_27148906_SNP [dm3] 3R_31323184_SNP [dm6]	A	T	1.149e^-4	0.63	INTRON CG34347
X	20976610	X_20976610_SNP [dm3] X_21105583_SNP [dm6]	C	A	1.149e^-4	0.63	INTRON stg1 & 2 others
X	10009294	X_10009294_SNP [dm3] X_10115261_SNP [dm6]	G	A	1.167e^-4	0.638	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	1915683	3R_1915683_SNP [dm3] 3R_6089961_SNP [dm6]	T	C	1.176e^-4	0.641	INTRON Gasp
X	21438931	X_21438931_SNP [dm3] X_21567904_SNP [dm6]	T	A	1.184e^-4	0.644	INTERGENIC
3L	1692241	3L_1692241_SNP [dm3] 3L_1692241_SNP [dm6]	T	C	1.192e^-4	0.645	INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9210715	X_9210715_SNP [dm3] X_9316682_SNP [dm6]	T	C	1.198e^-4	0.645	INTERGENIC
2L	6711258	2L_6711258_SNP [dm3] 2L_6711258_SNP [dm6]	T	C	1.201e^-4	0.645	DOWNSTREAM AkhR INTERGENIC
3R	26571160	3R_26571160_SNP [dm3] 3R_30745438_SNP [dm6]	T	G	1.202e^-4	0.645	UPSTREAM Npc2g DOWNSTREAM CG15543 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17768379	3R_17768379_SNP [dm3] 3R_21942657_SNP [dm6]	T	C	1.211e^-4	0.645	INTERGENIC
3L	11013516	3L_11013516_SNP [dm3] 3L_11020416_SNP [dm6]	A	T	1.217e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5953930	X_5953930_SNP [dm3] X_6059897_SNP [dm6]	G	A	1.219e^-4	0.645	UTR_5_PRIME CG5921
3R	21296405	3R_21296405_SNP [dm3] 3R_25470683_SNP [dm6]	C	T	1.222e^-4	0.645	INTRON Fur1	TF binding site BDTNP1_TFBS_twi
2L	6624158	2L_6624158_SNP [dm3] 2L_6624158_SNP [dm6]	C	T	1.222e^-4	0.645	SYNONYMOUS_CODING CG34345 DOWNSTREAM Oatp26F
3R	26951257	3R_26951257_SNP [dm3] 3R_31125535_SNP [dm6]	T	C	1.235e^-4	0.645	UPSTREAM CG15554 INTERGENIC
3L	10438590	3L_10438590_SNP [dm3] 3L_10445490_SNP [dm6]	A	G	1.236e^-4	0.645	INTERGENIC
3L	8245317	3L_8245317_SNP [dm3] 3L_8252217_SNP [dm6]	G	C	1.238e^-4	0.645	INTRON Dscam4
X	3625405	X_3625405_SNP [dm3] X_3731372_SNP [dm6]	C	T	1.241e^-4	0.645	INTRON tlk
3L	2267305	3L_2267305_SNP [dm3] 3L_2267305_SNP [dm6]	G	A	1.247e^-4	0.645	SYNONYMOUS_CODING CG13806 UPSTREAM obst-I	TF binding site mE1_TFBS_cad
3R	12027632	3R_12027632_SNP [dm3] 3R_16201910_SNP [dm6]	C	T	1.249e^-4	0.645	INTRON CG6126	TF binding site mE1_TFBS_inv
3R	22986407	3R_22986407_SNP [dm3] 3R_27160685_SNP [dm6]	G	C	1.249e^-4	0.645	UPSTREAM CG5909 DOWNSTREAM grass INTERGENIC
2R	6776310	2R_6776310_SNP [dm3] 2R_10888805_SNP [dm6]	C	T	1.255e^-4	0.645	SYNONYMOUS_CODING CG30020	TF binding site mE1_TFBS_cad
2L	5466966	2L_5466966_SNP [dm3] 2L_5466966_SNP [dm6]	A	T	1.257e^-4	0.645	UTR_3_PRIME mid DOWNSTREAM mid
2L	1175667	2L_1175667_SNP [dm3] 2L_1175667_SNP [dm6]	T	G	1.263e^-4	0.645	NON_SYNONYMOUS_CODING CG4887	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	10150734	3L_10150734_SNP [dm3] 3L_10157634_SNP [dm6]	A	G	1.264e^-4	0.645	INTRON dpr10
3L	4689279	3L_4689279_SNP [dm3] 3L_4689279_SNP [dm6]	T	G	1.264e^-4	0.645	SYNONYMOUS_CODING CG18418 UPSTREAM CG7514
3L	4689282	3L_4689282_SNP [dm3] 3L_4689282_SNP [dm6]	G	T	1.264e^-4	0.645	SYNONYMOUS_CODING CG18418 UPSTREAM CG7514
3L	1451398	3L_1451398_SNP [dm3] 3L_1451398_SNP [dm6]	G	T	1.269e^-4	0.645	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
3L	21801362	3L_21801362_SNP [dm3] 3L_21808262_SNP [dm6]	A	C	1.270e^-4	0.645	UPSTREAM eg INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17431796	2R_17431796_SNP [dm3] 2R_21544291_SNP [dm6]	C	T	1.276e^-4	0.647	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	14694285	3L_14694285_SNP [dm3] 3L_14701185_SNP [dm6]	A	C	1.287e^-4	0.647	NON_SYNONYMOUS_CODING CG17177 INTRON ome
2L	2075118	2L_2075118_SNP [dm3] 2L_2075118_SNP [dm6]	G	A	1.289e^-4	0.647	INTRON dpr3
3R	16214021	3R_16214021_SNP [dm3] 3R_20388299_SNP [dm6]	C	G	1.294e^-4	0.647	INTRON Gfrl
2L	7489420	2L_7489420_SNP [dm3] 2L_7489420_SNP [dm6]	G	C	1.296e^-4	0.647	INTRON Ziz
3R	25932755	3R_25932755_SNP [dm3] 3R_30107033_SNP [dm6]	A	T	1.298e^-4	0.647	INTRON sima
3R	23775075	3R_23775075_SNP [dm3] 3R_27949353_SNP [dm6]	T	C	1.306e^-4	0.647	SYNONYMOUS_CODING Gp93	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8704249	2L_8704249_SNP [dm3] 2L_8704249_SNP [dm6]	A	G	1.313e^-4	0.647	INTRON Hnf4 EXON CR44992
3R	10019764	3R_10019764_SNP [dm3] 3R_14194042_SNP [dm6]	C	A	1.315e^-4	0.647	INTRON Dop1R1
3R	15603682	3R_15603682_SNP [dm3] 3R_19777960_SNP [dm6]	T	C	1.316e^-4	0.647	UPSTREAM CG11659 & 1 other INTERGENIC
2L	3831087	2L_3831087_SNP [dm3] 2L_3831087_SNP [dm6]	C	G	1.330e^-4	0.647	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10191903	2L_10191903_SNP [dm3] 2L_10191903_SNP [dm6]	C	T	1.331e^-4	0.647	UPSTREAM CG31874 INTRON Sur
3L	7160301	3L_7160301_SNP [dm3] 3L_7167201_SNP [dm6]	T	A	1.333e^-4	0.647	INTRON Dscam2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17685319	3L_17685319_DEL [dm3] 3L_17692219_DEL [dm6]	AT	A	1.335e^-4	0.647	INTRON Ccn
3R	26943867	3R_26943867_SNP [dm3] 3R_31118145_SNP [dm6]	G	A	1.339e^-4	0.647	INTERGENIC
3L	9744979	3L_9744979_SNP [dm3] 3L_9751879_SNP [dm6]	A	T	1.348e^-4	0.647	UPSTREAM CG42268 INTRON CG42268	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	5303281	X_5303281_INS [dm3] X_5409248_INS [dm6]	G	GCCAAAG	1.351e^-4	0.647	INTRON NAAT1	TF binding site BDTNP1_TFBS_twi
2R	12854306	2R_12854306_SNP [dm3] 2R_16966801_SNP [dm6]	A	T	1.352e^-4	0.647	INTERGENIC
3L	10438589	3L_10438589_SNP [dm3] 3L_10445489_SNP [dm6]	C	A	1.355e^-4	0.647	INTERGENIC
3R	13573067	3R_13573067_SNP [dm3] 3R_17747345_SNP [dm6]	A	G	1.356e^-4	0.647	UTR_3_PRIME TyrRII
2L	2447323	2L_2447323_SNP [dm3] 2L_2447323_SNP [dm6]	T	C	1.356e^-4	0.647	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
3L	14227252	3L_14227252_SNP [dm3] 3L_14234152_SNP [dm6]	C	G	1.368e^-4	0.647	NON_SYNONYMOUS_CODING CG7924 DOWNSTREAM nuf & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	13468743	3R_13468743_SNP [dm3] 3R_17643021_SNP [dm6]	G	A	1.383e^-4	0.647	INTRON CG43175
X	6946662	X_6946662_SNP [dm3] X_7052629_SNP [dm6]	T	C	1.383e^-4	0.647	INTRON CG12541
3R	13569795	3R_13569795_SNP [dm3] 3R_17744073_SNP [dm6]	C	T	1.389e^-4	0.647	INTRON TyrRII	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4636094	3L_4636094_SNP [dm3] 3L_4636094_SNP [dm6]	G	A	1.391e^-4	0.647	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
3L	4689268	3L_4689268_SNP [dm3] 3L_4689268_SNP [dm6]	T	C	1.392e^-4	0.647	NON_SYNONYMOUS_CODING CG18418 UPSTREAM CG7514
2R	12854431	2R_12854431_SNP [dm3] 2R_16966926_SNP [dm6]	C	A	1.392e^-4	0.647	INTERGENIC
2L	17403357	2L_17403357_SNP [dm3] 2L_17403357_SNP [dm6]	G	T	1.396e^-4	0.647	INTRON CLIP-190
3R	15062239	3R_15062239_SNP [dm3] 3R_19236517_SNP [dm6]	C	T	1.404e^-4	0.647	INTRON unc79
3R	1937009	3R_1937009_INS [dm3] 3R_6111287_INS [dm6]	C	CGC	1.406e^-4	0.647	UPSTREAM Obp83ef DOWNSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
3R	1717983	3R_1717983_SNP [dm3] 3R_5892261_SNP [dm6]	G	A	1.414e^-4	0.647	SYNONYMOUS_CODING CG34113
2R	15385678	2R_15385678_SNP [dm3] 2R_19498173_SNP [dm6]	A	G	1.415e^-4	0.647	SYNONYMOUS_CODING CG15120	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27171498	3R_27171498_INS [dm3] 3R_31345776_INS [dm6]	G	GTAATGG	1.421e^-4	0.647	INTRON CG34347	TF binding site mE1_TFBS_chinmo
2L	10032297	2L_10032297_SNP [dm3] 2L_10032297_SNP [dm6]	C	G	1.422e^-4	0.647	UPSTREAM obst-B INTERGENIC
2R	17339288	2R_17339288_DEL [dm3] 2R_21451783_DEL [dm6]	AAAAA	A	1.429e^-4	0.647	INTRON Sdc
3R	26944290	3R_26944290_SNP [dm3] 3R_31118568_SNP [dm6]	G	A	1.436e^-4	0.647	INTERGENIC
2L	7914645	2L_7914645_SNP [dm3] 2L_7914645_SNP [dm6]	A	T	1.440e^-4	0.647	INTRON Snoo
2L	1943879	2L_1943879_DEL [dm3] 2L_1943879_DEL [dm6]	CAG	A	1.443e^-4	0.647	UTR_3_PRIME CG7337 DOWNSTREAM CG7337
2L	12163823	2L_12163823_SNP [dm3] 2L_12163823_SNP [dm6]	A	G	1.444e^-4	0.647	UPSTREAM ZnT33D INTRON CG31760
2R	17461585	2R_17461585_SNP [dm3] 2R_21574080_SNP [dm6]	C	T	1.446e^-4	0.647	INTRON CG10440
3L	9511642	3L_9511642_SNP [dm3] 3L_9518542_SNP [dm6]	T	C	1.447e^-4	0.647	INTRON CG33700
3L	4689498	3L_4689498_SNP [dm3] 3L_4689498_SNP [dm6]	C	T	1.450e^-4	0.647	SYNONYMOUS_CODING CG18418 UPSTREAM CG7514	TF binding site mE1_TFBS_HSA
3L	11773481	3L_11773481_SNP [dm3] 3L_11780381_SNP [dm6]	C	T	1.457e^-4	0.647	UTR_3_PRIME CG14131 INTRON Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8342522	3L_8342522_SNP [dm3] 3L_8349422_SNP [dm6]	A	G	1.466e^-4	0.647	SYNONYMOUS_CODING GAPcenA	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4344298	2L_4344298_SNP [dm3] 2L_4344298_SNP [dm6]	A	C	1.474e^-4	0.647	SYNONYMOUS_CODING Atet DOWNSTREAM mir-1005
3R	18834521	3R_18834521_SNP [dm3] 3R_23008799_SNP [dm6]	G	T	1.475e^-4	0.647	INTRON CG34375
3R	13572368	3R_13572368_DEL [dm3] 3R_17746646_DEL [dm6]	TTTG	T	1.477e^-4	0.647	UTR_3_PRIME TyrRII DOWNSTREAM TyrRII
3R	13572373	3R_13572373_DEL [dm3] 3R_17746651_DEL [dm6]	AGCTTCAAAAGCCGCATTTC...	A	1.477e^-4	0.647	UTR_3_PRIME TyrRII DOWNSTREAM TyrRII
3R	26569867	3R_26569867_SNP [dm3] 3R_30744145_SNP [dm6]	A	T	1.478e^-4	0.647	UTR_3_PRIME CG15543 DOWNSTREAM Npc2g & 1 other
3L	10167560	3L_10167560_SNP [dm3] 3L_10174460_SNP [dm6]	A	T	1.479e^-4	0.647	INTRON dpr10
3L	8927493	3L_8927493_SNP [dm3] 3L_8934393_SNP [dm6]	C	T	1.493e^-4	0.647	INTRON CG43783
2L	7914688	2L_7914688_SNP [dm3] 2L_7914688_SNP [dm6]	C	A	1.504e^-4	0.647	INTRON Snoo
2R	18356485	2R_18356485_SNP [dm3] 2R_22468980_SNP [dm6]	T	C	1.508e^-4	0.647	INTRON CG10384	TF binding site BDTNP1_TFBS_twi
2L	18917742	2L_18917742_SNP [dm3] 2L_18917742_SNP [dm6]	G	A	1.509e^-4	0.647	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3577872	2L_3577872_DEL [dm3] 2L_3577872_DEL [dm6]	CTCAAACAAC	C	1.512e^-4	0.647	DOWNSTREAM sob INTERGENIC
3R	1937093	3R_1937093_INS [dm3] 3R_6111371_INS [dm6]	T	TTACGT	1.514e^-4	0.647	UPSTREAM Obp83ef DOWNSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
3L	4700281	3L_4700281_SNP [dm3] 3L_4700281_SNP [dm6]	A	T	1.515e^-4	0.647	INTRON RhoGEF64C
3L	11012564	3L_11012564_SNP [dm3] 3L_11019464_SNP [dm6]	G	T	1.517e^-4	0.647	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	4079442	2R_4079442_SNP [dm3] 2R_8191937_SNP [dm6]	C	T	1.517e^-4	0.647	INTRON LRP1
2L	1597178	2L_1597178_SNP [dm3] 2L_1597178_SNP [dm6]	G	A	1.518e^-4	0.647	INTRON haf & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3636016	2R_3636016_SNP [dm3] 2R_7748511_SNP [dm6]	G	T	1.523e^-4	0.647	INTRON CG30497 & 1 other
3R	14914854	3R_14914854_SNP [dm3] 3R_19089132_SNP [dm6]	A	T	1.525e^-4	0.647	INTRON cdi
2R	17441516	2R_17441516_SNP [dm3] 2R_21554011_SNP [dm6]	C	T	1.530e^-4	0.647	INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18190294	2L_18190294_SNP [dm3] 2L_18190294_SNP [dm6]	A	T	1.531e^-4	0.647	INTRON CG42750
3L	17688470	3L_17688470_INS [dm3] 3L_17695370_INS [dm6]	T	TGGCTAT	1.532e^-4	0.647	INTRON Ccn
2R	6054792	2R_6054792_SNP [dm3] 2R_10167287_SNP [dm6]	T	C	1.532e^-4	0.647	INTRON KCNQ
3R	16214006	3R_16214006_SNP [dm3] 3R_20388284_SNP [dm6]	C	G	1.533e^-4	0.647	INTRON Gfrl
3L	7830355	3L_7830355_SNP [dm3] 3L_7837255_SNP [dm6]	C	A	1.534e^-4	0.647	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2L	4096809	2L_4096809_SNP [dm3] 2L_4096809_SNP [dm6]	T	C	1.540e^-4	0.647	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	16091092	3L_16091092_DEL [dm3] 3L_16097992_DEL [dm6]	TGT	T	1.547e^-4	0.647	SPLICE_SITE_REGION ms_3_72Dt UPSTREAM CG13074 INTRON ms_3_72Dt
3L	11013197	3L_11013197_SNP [dm3] 3L_11020097_SNP [dm6]	T	A	1.547e^-4	0.647	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	1892625	3R_1892625_SNP [dm3] 3R_6066903_SNP [dm6]	G	A	1.549e^-4	0.647	INTERGENIC
2R	19198350	2R_19198350_DEL [dm3] 2R_23310827_DEL [dm6]	TA	T	1.551e^-4	0.647	INTERGENIC
3L	3892777	3L_3892777_SNP [dm3] 3L_3892777_SNP [dm6]	C	T	1.553e^-4	0.647	UTR_5_PRIME Fie UPSTREAM CR45422 DOWNSTREAM snRNA:U11
X	10306606	X_10306606_SNP [dm3] X_10412573_SNP [dm6]	A	T	1.562e^-4	0.647	UTR_3_PRIME CG32683
3L	901094	3L_901094_SNP [dm3] 3L_901094_SNP [dm6]	T	C	1.563e^-4	0.647	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2R	19198325	2R_19198325_DEL [dm3] 2R_23310802_DEL [dm6]	ACT	A	1.565e^-4	0.647	UPSTREAM Prosbeta5R1 INTERGENIC
2R	19198335	2R_19198335_DEL [dm3] 2R_23310812_DEL [dm6]	TG	T	1.565e^-4	0.647	UPSTREAM Prosbeta5R1 INTERGENIC
3R	8091737	3R_8091737_SNP [dm3] 3R_12266015_SNP [dm6]	A	G	1.566e^-4	0.647	INTRON svp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10239878	3L_10239878_SNP [dm3] 3L_10246778_SNP [dm6]	C	T	1.571e^-4	0.647	UPSTREAM CR44539 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2R	11660921	2R_11660921_SNP [dm3] 2R_15773416_SNP [dm6]	G	T	1.571e^-4	0.647	DOWNSTREAM Zasp52 INTRON Zasp52
X	14659917	X_14659917_SNP [dm3] X_14765884_SNP [dm6]	G	C	1.575e^-4	0.647	UPSTREAM CG15890 INTERGENIC
2R	13547940	2R_13547940_SNP [dm3] 2R_17660435_SNP [dm6]	T	G	1.583e^-4	0.647	INTRON CCHa1-R
X	20924389	X_20924389_SNP [dm3] X_21053362_SNP [dm6]	C	T	1.585e^-4	0.647	UPSTREAM bves INTRON CG1518	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26961006	3R_26961006_DEL [dm3] 3R_31135284_DEL [dm6]	TT	T	1.589e^-4	0.647	INTRON Gycbeta100B
2L	1107783	2L_1107783_SNP [dm3] 2L_1107783_SNP [dm6]	T	A	1.589e^-4	0.647	UPSTREAM CG14339 INTRON mtRNApol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
2R	17695051	2R_17695051_SNP [dm3] 2R_21807546_SNP [dm6]	G	A	1.592e^-4	0.647	INTERGENIC
3L	4806028	3L_4806028_SNP [dm3] 3L_4806028_SNP [dm6]	C	T	1.592e^-4	0.647	UPSTREAM CG7509 DOWNSTREAM CG18808 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	4729833	2L_4729833_SNP [dm3] 2L_4729833_SNP [dm6]	C	T	1.593e^-4	0.647	INTERGENIC
3R	25597001	3R_25597001_SNP [dm3] 3R_29771279_SNP [dm6]	C	T	1.596e^-4	0.647	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	1930899	2L_1930899_SNP [dm3] 2L_1930899_SNP [dm6]	T	A	1.597e^-4	0.647	INTRON CG7337
3R	26943701	3R_26943701_SNP [dm3] 3R_31117979_SNP [dm6]	G	A	1.598e^-4	0.647	INTERGENIC
3R	1907151	3R_1907151_SNP [dm3] 3R_6081429_SNP [dm6]	T	G	1.598e^-4	0.647	INTERGENIC
3L	4700285	3L_4700285_SNP [dm3] 3L_4700285_SNP [dm6]	C	T	1.602e^-4	0.647	INTRON RhoGEF64C
3L	19231663	3L_19231663_SNP [dm3] 3L_19238563_SNP [dm6]	T	G	1.611e^-4	0.65	INTERGENIC
3R	26569379	3R_26569379_SNP [dm3] 3R_30743657_SNP [dm6]	T	C	1.616e^-4	0.65	SYNONYMOUS_CODING CG15543 DOWNSTREAM Npc2g	TF binding site mE1_TFBS_sens
X	19580033	X_19580033_SNP [dm3] X_19686000_SNP [dm6]	T	C	1.631e^-4	0.652	SYNONYMOUS_CODING Ubqn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	5482192	3L_5482192_SNP [dm3] 3L_5489092_SNP [dm6]	G	T	1.634e^-4	0.652	INTERGENIC
3R	9986800	3R_9986800_SNP [dm3] 3R_14161078_SNP [dm6]	A	T	1.636e^-4	0.652	UPSTREAM CG31327 INTERGENIC
3R	22988508	3R_22988508_SNP [dm3] 3R_27162786_SNP [dm6]	C	T	1.636e^-4	0.652	UTR_3_PRIME CG5909 UPSTREAM ppk31
3L	20059040	3L_20059040_SNP [dm3] 3L_20065940_SNP [dm6]	A	C	1.640e^-4	0.652	INTRON sNPF-R
3L	1728076	3L_1728076_SNP [dm3] 3L_1728076_SNP [dm6]	A	T	1.645e^-4	0.652	INTRON drpr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	18452896	X_18452896_SNP [dm3] X_18558863_SNP [dm6]	T	G	1.646e^-4	0.652	INTRON Bx
2R	1609816	2R_1609816_SNP [dm3] 2R_5722311_SNP [dm6]	T	G	1.648e^-4	0.652	INTRON ap	transposable element FlyBase
3R	1910410	3R_1910410_SNP [dm3] 3R_6084688_SNP [dm6]	G	A	1.656e^-4	0.654	INTERGENIC
3R	23745619	3R_23745619_DEL [dm3] 3R_27919897_DEL [dm6]	CAGAAACTGC	C	1.659e^-4	0.654	UTR_3_PRIME CG12259 UPSTREAM CG33213	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	23745489	3R_23745489_SNP [dm3] 3R_27919767_SNP [dm6]	C	G	1.669e^-4	0.656	UPSTREAM CG33213 DOWNSTREAM CG12259 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16614404	3R_16614404_SNP [dm3] 3R_20788682_SNP [dm6]	C	T	1.671e^-4	0.656	INTRON Syp
3R	18753240	3R_18753240_SNP [dm3] 3R_22927518_SNP [dm6]	T	C	1.680e^-4	0.656	INTRON klg
3R	18765811	3R_18765811_SNP [dm3] 3R_22940089_SNP [dm6]	G	T	1.680e^-4	0.656	INTRON klg
3R	19399371	3R_19399371_SNP [dm3] 3R_23573649_SNP [dm6]	A	C	1.682e^-4	0.656	SYNONYMOUS_CODING beat-IV	TF binding site mE1_TFBS_chinmo
2R	10211740	2R_10211740_SNP [dm3] 2R_14324235_SNP [dm6]	C	T	1.691e^-4	0.658	INTRON Shroom
3R	1892799	3R_1892799_SNP [dm3] 3R_6067077_SNP [dm6]	G	T	1.702e^-4	0.661	INTERGENIC
X	9200101	X_9200101_SNP [dm3] X_9306068_SNP [dm6]	T	C	1.710e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17747577	3R_17747577_SNP [dm3] 3R_21921855_SNP [dm6]	G	A	1.711e^-4	0.661	INTERGENIC
X	18975610	X_18975610_SNP [dm3] X_19081577_SNP [dm6]	T	A	1.712e^-4	0.661	UPSTREAM CG14191 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	5441874	2R_5441874_DEL [dm3] 2R_9554369_DEL [dm6]	TGTT	T	1.725e^-4	0.663	DOWNSTREAM CR43651 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	10224097	3L_10224097_SNP [dm3] 3L_10230997_SNP [dm6]	C	T	1.726e^-4	0.663	INTERGENIC
3R	9519886	3R_9519886_SNP [dm3] 3R_13694164_SNP [dm6]	T	G	1.733e^-4	0.664	DOWNSTREAM flfl INTRON CG14367
X	4075128	X_4075128_DEL [dm3] X_4181095_DEL [dm6]	CTTTATGCC	C	1.737e^-4	0.664	INTRON Fas2
3L	7834629	3L_7834629_SNP [dm3] 3L_7841529_SNP [dm6]	G	A	1.740e^-4	0.664	INTRON Pdp1	regulatory region REDfly_CRMs
3R	1895336	3R_1895336_SNP [dm3] 3R_6069614_SNP [dm6]	G	A	1.744e^-4	0.664	INTERGENIC
2L	10604311	2L_10604311_SNP [dm3] 2L_10604311_SNP [dm6]	C	T	1.748e^-4	0.664	INTRON Trim9	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25406633	3R_25406633_SNP [dm3] 3R_29580911_SNP [dm6]	A	G	1.748e^-4	0.664	INTERGENIC
3R	1939882	3R_1939882_SNP [dm3] 3R_6114160_SNP [dm6]	C	A	1.754e^-4	0.665	INTERGENIC
2L	1952640	2L_1952640_SNP [dm3] 2L_1952640_SNP [dm6]	G	A	1.763e^-4	0.666	SYNONYMOUS_CODING erm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12132495	3L_12132495_SNP [dm3] 3L_12139395_SNP [dm6]	T	C	1.771e^-4	0.666	UPSTREAM l_3_neo18 INTRON RhoGAP68F
2R	16479008	2R_16479008_SNP [dm3] 2R_20591503_SNP [dm6]	T	A	1.774e^-4	0.666	INTRON bl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7490357	2L_7490357_SNP [dm3] 2L_7490357_SNP [dm6]	A	G	1.781e^-4	0.666	INTRON Ziz
3L	20144226	3L_20144226_SNP [dm3] 3L_20151126_SNP [dm6]	T	C	1.785e^-4	0.666	UTR_3_PRIME CG42674
3L	12451606	3L_12451606_SNP [dm3] 3L_12458506_SNP [dm6]	G	A	1.785e^-4	0.666	INTERGENIC
3L	3908376	3L_3908376_SNP [dm3] 3L_3908376_SNP [dm6]	G	A	1.786e^-4	0.666	SYNONYMOUS_CODING mge UTR_3_PRIME mge DOWNSTREAM ida
2L	13863437	2L_13863437_INS [dm3] 2L_13863437_INS [dm6]	A	AA	1.786e^-4	0.666	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2R	12270822	2R_12270822_SNP [dm3] 2R_16383317_SNP [dm6]	A	G	1.794e^-4	0.668	UTR_3_PRIME CG43187
3L	19224104	3L_19224104_SNP [dm3] 3L_19231004_SNP [dm6]	C	T	1.807e^-4	0.67	DOWNSTREAM CR43893 INTRON fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	8046202	3L_8046202_SNP [dm3] 3L_8053102_SNP [dm6]	A	G	1.810e^-4	0.67	UTR_3_PRIME nmo DOWNSTREAM nmo
3R	25173843	3R_25173843_SNP [dm3] 3R_29348121_SNP [dm6]	A	C	1.812e^-4	0.67	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17472669	2R_17472669_SNP [dm3] 2R_21585164_SNP [dm6]	T	C	1.819e^-4	0.671	UTR_3_PRIME CG30222	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22991559	3R_22991559_SNP [dm3] 3R_27165837_SNP [dm6]	A	G	1.832e^-4	0.671	UPSTREAM CG34293 DOWNSTREAM ppk31 INTRON spn-D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	17423731	2R_17423731_SNP [dm3] 2R_21536226_SNP [dm6]	C	T	1.838e^-4	0.671	NON_SYNONYMOUS_CODING CG30286 DOWNSTREAM CG30287 INTRON Egfr & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_sens
X	11103504	X_11103504_SNP [dm3] X_11209471_SNP [dm6]	A	G	1.844e^-4	0.671	INTERGENIC
2L	15385584	2L_15385584_SNP [dm3] 2L_15385584_SNP [dm6]	G	T	1.844e^-4	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	19287756	3L_19287756_DEL [dm3] 3L_19294656_DEL [dm6]	GTCTACG	G	1.849e^-4	0.671	UPSTREAM fal INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	10604295	2L_10604295_DEL [dm3] 2L_10604295_DEL [dm6]	TA	T	1.855e^-4	0.671	INTRON Trim9	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4687182	3L_4687182_SNP [dm3] 3L_4687182_SNP [dm6]	G	A	1.858e^-4	0.671	UTR_5_PRIME axo DOWNSTREAM CG7514
2R	19198248	2R_19198248_SNP [dm3] 2R_23310725_SNP [dm6]	G	C	1.860e^-4	0.671	UPSTREAM Prosbeta5R1 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	12688677	X_12688677_SNP [dm3] X_12794644_SNP [dm6]	A	G	1.861e^-4	0.671	INTRON Pde9
3R	21603965	3R_21603965_SNP [dm3] 3R_25778243_SNP [dm6]	A	G	1.866e^-4	0.671	UTR_5_PRIME CG4956
2R	12153362	2R_12153362_SNP [dm3] 2R_16265857_SNP [dm6]	T	A	1.867e^-4	0.671	SPLICE_SITE_REGION csul INTRON csul
3R	19449581	3R_19449581_SNP [dm3] 3R_23623859_SNP [dm6]	C	T	1.868e^-4	0.671	INTRON CG31145
2R	17179699	2R_17179699_SNP [dm3] 2R_21292194_SNP [dm6]	C	A	1.869e^-4	0.671	UPSTREAM CG30392 DOWNSTREAM Sgf29 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6889907	2L_6889907_SNP [dm3] 2L_6889907_SNP [dm6]	C	T	1.871e^-4	0.671	INTRON Nlg2
2R	1779067	2R_1779067_SNP [dm3] 2R_5891562_SNP [dm6]	T	C	1.874e^-4	0.671	INTERGENIC
X	10416678	X_10416678_SNP [dm3] X_10522645_SNP [dm6]	C	A	1.881e^-4	0.671	INTRON spri
3L	676943	3L_676943_SNP [dm3] 3L_676943_SNP [dm6]	G	T	1.890e^-4	0.671	DOWNSTREAM CG17129 INTERGENIC
3R	20561440	3R_20561440_SNP [dm3] 3R_24735718_SNP [dm6]	C	T	1.891e^-4	0.671	INTRON tok
2R	4868210	2R_4868210_SNP [dm3] 2R_8980705_SNP [dm6]	C	T	1.892e^-4	0.671	INTRON CG8213	TF binding site mE1_TFBS_inv
2L	3876513	2L_3876513_INS [dm3] 2L_3876513_INS [dm6]	A	AC	1.893e^-4	0.671	INTRON capu
X	2447639	X_2447639_SNP [dm3] X_2553606_SNP [dm6]	C	T	1.897e^-4	0.671	UPSTREAM Pdfr INTRON Pdfr
3R	7998700	3R_7998700_SNP [dm3] 3R_12172978_SNP [dm6]	T	A	1.897e^-4	0.671	INTERGENIC
2R	12623851	2R_12623851_SNP [dm3] 2R_16736346_SNP [dm6]	C	T	1.911e^-4	0.673	DOWNSTREAM CG43104 INTERGENIC
3R	6794200	3R_6794200_SNP [dm3] 3R_10968478_SNP [dm6]	G	T	1.920e^-4	0.673	INTERGENIC
3L	21801329	3L_21801329_SNP [dm3] 3L_21808229_SNP [dm6]	T	G	1.922e^-4	0.673	UPSTREAM eg INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10498335	2L_10498335_SNP [dm3] 2L_10498335_SNP [dm6]	T	A	1.922e^-4	0.673	INTRON Myo31DF
X	9492467	X_9492467_SNP [dm3] X_9598434_SNP [dm6]	G	A	1.929e^-4	0.673	INTERGENIC
3L	14217906	3L_14217906_SNP [dm3] 3L_14224806_SNP [dm6]	T	C	1.933e^-4	0.673	INTRON nuf
3L	1692325	3L_1692325_SNP [dm3] 3L_1692325_SNP [dm6]	A	G	1.934e^-4	0.673	INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	19287717	3L_19287717_SNP [dm3] 3L_19294617_SNP [dm6]	G	A	1.936e^-4	0.673	UPSTREAM fal INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	10416558	X_10416558_SNP [dm3] X_10522525_SNP [dm6]	G	A	1.937e^-4	0.673	INTRON spri
3L	13063911	3L_13063911_SNP [dm3] 3L_13070811_SNP [dm6]	G	T	1.942e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16243870	2R_16243870_SNP [dm3] 2R_20356365_SNP [dm6]	T	G	1.947e^-4	0.673	INTERGENIC
X	16669799	X_16669799_SNP [dm3] X_16775766_SNP [dm6]	G	A	1.950e^-4	0.673	INTRON if	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6793235	3R_6793235_SNP [dm3] 3R_10967513_SNP [dm6]	A	T	1.950e^-4	0.673	INTERGENIC
3L	21545334	3L_21545334_SNP [dm3] 3L_21552234_SNP [dm6]	A	C	1.953e^-4	0.673	SYNONYMOUS_CODING Wnk
3L	9577801	3L_9577801_SNP [dm3] 3L_9584701_SNP [dm6]	A	T	1.955e^-4	0.673	INTRON CG42673
2R	6126894	2R_6126894_SNP [dm3] 2R_10239389_SNP [dm6]	C	T	1.963e^-4	0.674	UPSTREAM Hdc INTRON Hdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	6627856	2L_6627856_SNP [dm3] 2L_6627856_SNP [dm6]	A	G	1.970e^-4	0.674	INTRON Oatp26F	TF binding site mE1_TFBS_cad
3L	4689630	3L_4689630_SNP [dm3] 3L_4689630_SNP [dm6]	C	A	1.971e^-4	0.674	SYNONYMOUS_CODING CG18418 UPSTREAM CG7514	TF binding site mE1_TFBS_HSA
2L	18189883	2L_18189883_SNP [dm3] 2L_18189883_SNP [dm6]	T	G	1.975e^-4	0.674	INTRON CG42750
3L	13869735	3L_13869735_SNP [dm3] 3L_13876635_SNP [dm6]	A	G	1.978e^-4	0.674	INTRON dysc
2R	17127698	2R_17127698_SNP [dm3] 2R_21240193_SNP [dm6]	A	T	1.988e^-4	0.676	INTRON ASPP
X	8716469	X_8716469_DEL [dm3] X_8822436_DEL [dm6]	AT	A	1.996e^-4	0.676	INTERGENIC
3R	18659212	3R_18659212_SNP [dm3] 3R_22833490_SNP [dm6]	C	T	1.996e^-4	0.676	INTERGENIC
2R	17127622	2R_17127622_SNP [dm3] 2R_21240117_SNP [dm6]	G	A	1.998e^-4	0.676	INTRON ASPP
3R	26569415	3R_26569415_SNP [dm3] 3R_30743693_SNP [dm6]	A	G	2.008e^-4	0.677	SYNONYMOUS_CODING CG15543 DOWNSTREAM Npc2g
X	11741355	X_11741355_SNP [dm3] X_11847322_SNP [dm6]	A	C	2.022e^-4	0.677	INTERGENIC
2R	9423740	2R_9423740_SNP [dm3] 2R_13536235_SNP [dm6]	G	A	2.023e^-4	0.677	UPSTREAM tRNA:K2:50C INTERGENIC
3R	5325603	3R_5325603_SNP [dm3] 3R_9499881_SNP [dm6]	G	T	2.025e^-4	0.677	INTRON RhoL
3R	1936333	3R_1936333_SNP [dm3] 3R_6110611_SNP [dm6]	C	A	2.027e^-4	0.677	DOWNSTREAM Obp83cd INTRON Obp83ef
3R	8009146	3R_8009146_SNP [dm3] 3R_12183424_SNP [dm6]	A	C	2.027e^-4	0.677	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1943447	2L_1943447_SNP [dm3] 2L_1943447_SNP [dm6]	G	A	2.039e^-4	0.677	UTR_3_PRIME CG7337
3R	8047999	3R_8047999_SNP [dm3] 3R_12222277_SNP [dm6]	G	A	2.041e^-4	0.677	UPSTREAM CG10014 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_zfh1
3R	9451755	3R_9451755_DEL [dm3] 3R_13626033_DEL [dm6]	AA	A	2.041e^-4	0.677	INTERGENIC
3L	5398330	3L_5398330_SNP [dm3] 3L_5405230_SNP [dm6]	C	G	2.049e^-4	0.677	INTERGENIC
2L	3845082	2L_3845082_SNP [dm3] 2L_3845082_SNP [dm6]	T	A	2.057e^-4	0.677	DOWNSTREAM CR44983 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19287718	3L_19287718_SNP [dm3] 3L_19294618_SNP [dm6]	T	A	2.061e^-4	0.677	UPSTREAM fal INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	5527019	X_5527019_DEL [dm3] X_5632986_DEL [dm6]	AGTAG	A	2.064e^-4	0.677	INTRON CG42492	TF binding site mE1_TFBS_HSA
X	5527025	X_5527025_DEL [dm3] X_5632992_DEL [dm6]	AGT	A	2.064e^-4	0.677	INTRON CG42492	TF binding site mE1_TFBS_HSA
3R	24903056	3R_24903056_SNP [dm3] 3R_29077334_SNP [dm6]	C	T	2.066e^-4	0.677	INTRON CG11873
3L	7055395	3L_7055395_SNP [dm3] 3L_7062295_SNP [dm6]	C	T	2.072e^-4	0.677	INTRON CG8641	TF binding site mE1_TFBS_cad
2R	19329982	2R_19329982_SNP [dm3] 2R_23442459_SNP [dm6]	C	T	2.077e^-4	0.677	INTERGENIC
3R	1908344	3R_1908344_SNP [dm3] 3R_6082622_SNP [dm6]	T	C	2.083e^-4	0.677	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	6099236	2R_6099236_SNP [dm3] 2R_10211731_SNP [dm6]	A	G	2.092e^-4	0.677	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	5789969	2R_5789969_SNP [dm3] 2R_9902464_SNP [dm6]	C	T	2.092e^-4	0.677	INTRON CG1441	TF binding site mE1_TFBS_cad
X	6884006	X_6884006_SNP [dm3] X_6989973_SNP [dm6]	A	G	2.097e^-4	0.677	INTRON ogre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	6884034	X_6884034_SNP [dm3] X_6990001_SNP [dm6]	C	T	2.097e^-4	0.677	INTRON ogre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Trl
X	9210792	X_9210792_SNP [dm3] X_9316759_SNP [dm6]	A	T	2.102e^-4	0.677	INTERGENIC
3L	19287227	3L_19287227_SNP [dm3] 3L_19294127_SNP [dm6]	T	A	2.102e^-4	0.677	UPSTREAM fal INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 transposable element FlyBase
3R	1970315	3R_1970315_SNP [dm3] 3R_6144593_SNP [dm6]	A	G	2.106e^-4	0.677	INTERGENIC
2L	1105144	2L_1105144_SNP [dm3] 2L_1105144_SNP [dm6]	C	G	2.107e^-4	0.677	INTRON mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15385675	2R_15385675_SNP [dm3] 2R_19498170_SNP [dm6]	C	A	2.109e^-4	0.677	SYNONYMOUS_CODING CG15120	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9682909	3L_9682909_SNP [dm3] 3L_9689809_SNP [dm6]	C	T	2.123e^-4	0.677	INTRON CG6767
3L	9511648	3L_9511648_SNP [dm3] 3L_9518548_SNP [dm6]	A	G	2.124e^-4	0.677	INTRON CG33700
2L	4640005	2L_4640005_SNP [dm3] 2L_4640005_SNP [dm6]	T	C	2.124e^-4	0.677	INTERGENIC
3L	4609225	3L_4609225_SNP [dm3] 3L_4609225_SNP [dm6]	T	C	2.124e^-4	0.677	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	20924522	X_20924522_SNP [dm3] X_21053495_SNP [dm6]	T	C	2.126e^-4	0.677	UPSTREAM bves INTRON CG1518	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	3897462	2L_3897462_SNP [dm3] 2L_3897462_SNP [dm6]	G	T	2.127e^-4	0.677	INTRON capu
3R	26115713	3R_26115713_SNP [dm3] 3R_30289991_SNP [dm6]	A	C	2.128e^-4	0.677	INTRON hdc
3R	15450827	3R_15450827_INS [dm3] 3R_19625105_INS [dm6]	A	ATA	2.132e^-4	0.677	UPSTREAM CG6231 INTRON CG6231
3L	7160306	3L_7160306_SNP [dm3] 3L_7167206_SNP [dm6]	A	T	2.134e^-4	0.677	INTRON Dscam2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25879174	3R_25879174_SNP [dm3] 3R_30053452_SNP [dm6]	G	C	2.138e^-4	0.677	SYNONYMOUS_CODING CG7946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	1882236	3R_1882236_SNP [dm3] 3R_6056514_SNP [dm6]	C	T	2.138e^-4	0.677	SYNONYMOUS_CODING CG15580
2R	6099021	2R_6099021_SNP [dm3] 2R_10211516_SNP [dm6]	A	T	2.153e^-4	0.678	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	9187695	X_9187695_SNP [dm3] X_9293662_SNP [dm6]	G	A	2.155e^-4	0.678	INTRON lz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17873037	2R_17873037_SNP [dm3] 2R_21985532_SNP [dm6]	C	A	2.161e^-4	0.678	DOWNSTREAM CG30401 INTERGENIC
2L	3947580	2L_3947580_SNP [dm3] 2L_3947580_SNP [dm6]	A	G	2.161e^-4	0.678	INTRON fred
2L	6850371	2L_6850371_SNP [dm3] 2L_6850371_SNP [dm6]	T	A	2.162e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	16213984	3R_16213984_SNP [dm3] 3R_20388262_SNP [dm6]	A	G	2.165e^-4	0.678	INTRON Gfrl
2L	6904102	2L_6904102_SNP [dm3] 2L_6904102_SNP [dm6]	C	T	2.166e^-4	0.678	INTRON Nlg2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	3059292	X_3059292_SNP [dm3] X_3165259_SNP [dm6]	A	G	2.183e^-4	0.681	SYNONYMOUS_CODING N	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9165942	3L_9165942_SNP [dm3] 3L_9172842_SNP [dm6]	G	A	2.190e^-4	0.681	INTRON Rdl
X	10416708	X_10416708_SNP [dm3] X_10522675_SNP [dm6]	G	C	2.192e^-4	0.681	INTRON spri
2L	10362383	2L_10362383_SNP [dm3] 2L_10362383_SNP [dm6]	G	A	2.193e^-4	0.681	SYNONYMOUS_CODING Cand1 UPSTREAM pim	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	16571911	2R_16571911_SNP [dm3] 2R_20684406_SNP [dm6]	A	G	2.196e^-4	0.681	INTERGENIC
3L	21796232	3L_21796232_SNP [dm3] 3L_21803132_SNP [dm6]	T	A	2.197e^-4	0.681	INTERGENIC
X	10416701	X_10416701_SNP [dm3] X_10522668_SNP [dm6]	T	A	2.201e^-4	0.681	INTRON spri
3R	13745039	3R_13745039_SNP [dm3] 3R_17919317_SNP [dm6]	A	T	2.218e^-4	0.682	UPSTREAM cpo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	1938063	3R_1938063_SNP [dm3] 3R_6112341_SNP [dm6]	A	C	2.218e^-4	0.682	UPSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
2L	3898840	2L_3898840_SNP [dm3] 2L_3898840_SNP [dm6]	T	G	2.222e^-4	0.682	INTRON capu
2L	3898841	2L_3898841_SNP [dm3] 2L_3898841_SNP [dm6]	T	A	2.222e^-4	0.682	INTRON capu
3R	14308618	3R_14308618_SNP [dm3] 3R_18482896_SNP [dm6]	G	T	2.225e^-4	0.682	INTRON fru
3L	9230748	3L_9230748_SNP [dm3] 3L_9237648_SNP [dm6]	A	C	2.227e^-4	0.682	UPSTREAM CG4483 INTERGENIC
2L	11484358	2L_11484358_SNP [dm3] 2L_11484358_SNP [dm6]	C	T	2.232e^-4	0.682	UPSTREAM CG43355 & 1 other INTERGENIC
2L	621803	2L_621803_SNP [dm3] 2L_621803_SNP [dm6]	C	T	2.239e^-4	0.682	UPSTREAM lectin-21Cb INTERGENIC
2L	6904814	2L_6904814_SNP [dm3] 2L_6904814_SNP [dm6]	A	G	2.248e^-4	0.682	SYNONYMOUS_CODING Nlg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10138864	3R_10138864_SNP [dm3] 3R_14313142_SNP [dm6]	C	T	2.259e^-4	0.682	INTRON CG31321
3L	7055423	3L_7055423_SNP [dm3] 3L_7062323_SNP [dm6]	A	G	2.279e^-4	0.682	INTRON CG8641	TF binding site mE1_TFBS_cad
3R	16204973	3R_16204973_SNP [dm3] 3R_20379251_SNP [dm6]	A	G	2.285e^-4	0.682	UTR_3_PRIME Gfrl
X	12876518	X_12876518_SNP [dm3] X_12982485_SNP [dm6]	A	T	2.298e^-4	0.682	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9261166	3L_9261166_SNP [dm3] 3L_9268066_SNP [dm6]	G	A	2.299e^-4	0.682	INTRON GluRIB
3R	1821640	3R_1821640_SNP [dm3] 3R_5995918_SNP [dm6]	T	A	2.302e^-4	0.682	UPSTREAM CR44928 INTERGENIC
3R	25738184	3R_25738184_SNP [dm3] 3R_29912462_SNP [dm6]	A	T	2.303e^-4	0.682	DOWNSTREAM Capa INTRON CG31036
3L	3088149	3L_3088149_SNP [dm3] 3L_3088149_SNP [dm6]	T	G	2.304e^-4	0.682	INTRON CG11486	TF binding site mE1_TFBS_sens
3L	1069442	3L_1069442_SNP [dm3] 3L_1069442_SNP [dm6]	G	A	2.306e^-4	0.682	INTRON bab1
X	10428455	X_10428455_SNP [dm3] X_10534422_SNP [dm6]	C	T	2.308e^-4	0.682	INTRON spri
3L	19287513	3L_19287513_SNP [dm3] 3L_19294413_SNP [dm6]	A	G	2.308e^-4	0.682	UPSTREAM fal INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	12163255	2L_12163255_SNP [dm3] 2L_12163255_SNP [dm6]	T	A	2.308e^-4	0.682	UPSTREAM ZnT33D DOWNSTREAM CG31861 INTRON CG31760
3R	5346538	3R_5346538_SNP [dm3] 3R_9520816_SNP [dm6]	T	A	2.312e^-4	0.682	NON_SYNONYMOUS_CODING JHDM2 INTRON CG8176	TF binding site mE1_TFBS_cad
2R	10274925	2R_10274925_SNP [dm3] 2R_14387420_SNP [dm6]	C	G	2.317e^-4	0.682	INTERGENIC
3L	19207388	3L_19207388_SNP [dm3] 3L_19214288_SNP [dm6]	C	A	2.319e^-4	0.682	INTRON fz2
3L	7055394	3L_7055394_SNP [dm3] 3L_7062294_SNP [dm6]	A	T	2.320e^-4	0.682	INTRON CG8641	TF binding site mE1_TFBS_cad
3L	9338923	3L_9338923_SNP [dm3] 3L_9345823_SNP [dm6]	C	T	2.330e^-4	0.682	INTRON PGRP-LC
3R	26569067	3R_26569067_SNP [dm3] 3R_30743345_SNP [dm6]	G	C	2.339e^-4	0.682	SYNONYMOUS_CODING CG15543	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11385982	3L_11385982_SNP [dm3] 3L_11392882_SNP [dm6]	A	C	2.347e^-4	0.682	INTERGENIC
3R	5346690	3R_5346690_SNP [dm3] 3R_9520968_SNP [dm6]	T	C	2.354e^-4	0.682	DOWNSTREAM JHDM2 INTRON CG8176
X	20977579	X_20977579_SNP [dm3] X_21106552_SNP [dm6]	T	A	2.359e^-4	0.682	UPSTREAM CG1503 INTRON stg1 & 1 other
3R	25054566	3R_25054566_SNP [dm3] 3R_29228844_SNP [dm6]	G	A	2.364e^-4	0.682	UPSTREAM CG15817 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3L	5753139	3L_5753139_SNP [dm3] 3L_5760039_SNP [dm6]	C	T	2.364e^-4	0.682	SYNONYMOUS_CODING Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3140205	2R_3140205_SNP [dm3] 2R_7252700_SNP [dm6]	G	T	2.370e^-4	0.682	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12900557	3L_12900557_DEL [dm3] 3L_12907457_DEL [dm6]	TT	T	2.380e^-4	0.682	INTERGENIC
2L	6991239	2L_6991239_SNP [dm3] 2L_6991239_SNP [dm6]	G	A	2.381e^-4	0.682	INTRON uif
2L	1177053	2L_1177053_SNP [dm3] 2L_1177053_SNP [dm6]	G	T	2.382e^-4	0.682	SYNONYMOUS_CODING CG4887 UPSTREAM CG4896	TF binding site mE1_TFBS_sens
2L	4670460	2L_4670460_SNP [dm3] 2L_4670460_SNP [dm6]	T	C	2.389e^-4	0.682	INTERGENIC
3R	10138734	3R_10138734_SNP [dm3] 3R_14313012_SNP [dm6]	A	G	2.390e^-4	0.682	SYNONYMOUS_CODING CG31321
2R	4868859	2R_4868859_INS [dm3] 2R_8981354_INS [dm6]	A	AGTAAT	2.391e^-4	0.682	INTRON CG8213	TF binding site mE1_TFBS_inv
3R	25602490	3R_25602490_SNP [dm3] 3R_29776768_SNP [dm6]	A	T	2.391e^-4	0.682	INTRON kay
3L	14074793	3L_14074793_SNP [dm3] 3L_14081693_SNP [dm6]	T	C	2.392e^-4	0.682	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_cad
3R	18263470	3R_18263470_SNP [dm3] 3R_22437748_SNP [dm6]	A	G	2.398e^-4	0.682	INTERGENIC
3L	10455865	3L_10455865_SNP [dm3] 3L_10462765_SNP [dm6]	T	C	2.402e^-4	0.682	SYNONYMOUS_CODING Gem3	TF binding site mE1_TFBS_bab1 mE1_TFBS_sens
3L	12759404	3L_12759404_SNP [dm3] 3L_12766304_SNP [dm6]	G	T	2.405e^-4	0.682	INTRON CG32113
3R	17384407	3R_17384407_SNP [dm3] 3R_21558685_SNP [dm6]	C	A	2.406e^-4	0.682	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	1947526	2L_1947526_SNP [dm3] 2L_1947526_SNP [dm6]	G	A	2.410e^-4	0.682	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	7328464	3R_7328464_SNP [dm3] 3R_11502742_SNP [dm6]	G	A	2.412e^-4	0.682	INTRON dpr5
X	8716511	X_8716511_SNP [dm3] X_8822478_SNP [dm6]	C	A	2.412e^-4	0.682	INTERGENIC
3L	9396473	3L_9396473_SNP [dm3] 3L_9403373_SNP [dm6]	C	A	2.415e^-4	0.682	UPSTREAM eIF-4E INTERGENIC
3R	12027744	3R_12027744_SNP [dm3] 3R_16202022_SNP [dm6]	C	A	2.419e^-4	0.682	INTRON CG6126	TF binding site mE1_TFBS_inv
3R	4514208	3R_4514208_SNP [dm3] 3R_8688486_SNP [dm6]	T	A	2.422e^-4	0.682	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1892890	3R_1892890_SNP [dm3] 3R_6067168_SNP [dm6]	T	G	2.424e^-4	0.682	INTERGENIC
3R	26571193	3R_26571193_SNP [dm3] 3R_30745471_SNP [dm6]	A	G	2.426e^-4	0.682	UPSTREAM Npc2g DOWNSTREAM CG15543 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9228173	2R_9228173_SNP [dm3] 2R_13340668_SNP [dm6]	T	C	2.426e^-4	0.682	INTRON CR44206	TF binding site mE1_TFBS_chinmo
2L	10825603	2L_10825603_DEL [dm3] 2L_10825603_DEL [dm6]	TCGCACTT	T	2.433e^-4	0.682	INTRON Nos
3R	8038282	3R_8038282_SNP [dm3] 3R_12212560_SNP [dm6]	A	T	2.434e^-4	0.682	INTERGENIC	transposable element FlyBase
2L	3434739	2L_3434739_SNP [dm3] 2L_3434739_SNP [dm6]	T	C	2.437e^-4	0.682	INTERGENIC
X	5954751	X_5954751_SNP [dm3] X_6060718_SNP [dm6]	G	A	2.456e^-4	0.682	SYNONYMOUS_CODING CG5921	TF binding site mE1_TFBS_chinmo
X	9492466	X_9492466_SNP [dm3] X_9598433_SNP [dm6]	G	A	2.458e^-4	0.682	INTERGENIC
3L	7055349	3L_7055349_SNP [dm3] 3L_7062249_SNP [dm6]	T	A	2.460e^-4	0.682	INTRON CG8641	TF binding site mE1_TFBS_cad
3L	19223903	3L_19223903_SNP [dm3] 3L_19230803_SNP [dm6]	A	G	2.461e^-4	0.682	DOWNSTREAM CR43893 INTRON fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	8774249	X_8774249_SNP [dm3] X_8880216_SNP [dm6]	G	T	2.466e^-4	0.682	INTRON Moe	TF binding site mE1_TFBS_inv
2L	6904079	2L_6904079_SNP [dm3] 2L_6904079_SNP [dm6]	C	T	2.468e^-4	0.682	SPLICE_SITE_REGION Nlg2 INTRON Nlg2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2822948	3L_2822948_SNP [dm3] 3L_2822948_SNP [dm6]	G	C	2.469e^-4	0.682	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4119245	2L_4119245_SNP [dm3] 2L_4119245_SNP [dm6]	G	T	2.475e^-4	0.682	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5084001	2L_5084001_SNP [dm3] 2L_5084001_SNP [dm6]	T	C	2.483e^-4	0.682	INTRON pgant5	TF binding site mE1_TFBS_cad
3L	7055352	3L_7055352_SNP [dm3] 3L_7062252_SNP [dm6]	T	G	2.490e^-4	0.682	INTRON CG8641	TF binding site mE1_TFBS_cad
3L	7833497	3L_7833497_SNP [dm3] 3L_7840397_SNP [dm6]	G	C	2.494e^-4	0.682	INTRON Pdp1	regulatory region REDfly_CRMs
2L	1095175	2L_1095175_SNP [dm3] 2L_1095175_SNP [dm6]	T	C	2.501e^-4	0.682	INTRON CG4629
3R	18263457	3R_18263457_SNP [dm3] 3R_22437735_SNP [dm6]	T	C	2.502e^-4	0.682	INTERGENIC
3R	19021172	3R_19021172_SNP [dm3] 3R_23195450_SNP [dm6]	G	A	2.502e^-4	0.682	INTRON cnc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2967734	X_2967734_SNP [dm3] X_3073701_SNP [dm6]	C	T	2.507e^-4	0.682	INTRON kirre
3L	21552503	3L_21552503_SNP [dm3] 3L_21559403_SNP [dm6]	A	G	2.524e^-4	0.682	INTRON CapaR
X	3424518	X_3424518_SNP [dm3] X_3530485_SNP [dm6]	G	A	2.528e^-4	0.682	START_GAINED CG32791 UTR_5_PRIME CG32791 INTRON CG32791	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1890677	3R_1890677_SNP [dm3] 3R_6064955_SNP [dm6]	A	G	2.531e^-4	0.682	INTERGENIC
2R	17399527	2R_17399527_SNP [dm3] 2R_21512022_SNP [dm6]	A	C	2.532e^-4	0.682	INTRON MESK2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17695750	2R_17695750_DEL [dm3] 2R_21808245_DEL [dm6]	TGGT	T	2.537e^-4	0.682	INTERGENIC
2R	9316948	2R_9316948_SNP [dm3] 2R_13429443_SNP [dm6]	T	C	2.537e^-4	0.682	UPSTREAM CG42321 DOWNSTREAM tRNA:I:49Fa INTRON CG42321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3136647	3L_3136647_INS [dm3] 3L_3136647_INS [dm6]	C	CGGC	2.544e^-4	0.682	INTRON CG11537
3R	7551153	3R_7551153_SNP [dm3] 3R_11725431_SNP [dm6]	T	G	2.545e^-4	0.682	INTRON CG12594	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	1937103	3R_1937103_SNP [dm3] 3R_6111381_SNP [dm6]	G	T	2.549e^-4	0.682	UPSTREAM Obp83ef DOWNSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
3R	20075801	3R_20075801_SNP [dm3] 3R_24250079_SNP [dm6]	G	A	2.551e^-4	0.682	UTR_3_PRIME mask DOWNSTREAM CG5706
2L	14750228	2L_14750228_SNP [dm3] 2L_14750228_SNP [dm6]	A	G	2.553e^-4	0.682	INTERGENIC
2L	2166859	2L_2166859_SNP [dm3] 2L_2166859_SNP [dm6]	T	C	2.554e^-4	0.682	INTRON aop	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	18149587	2R_18149587_SNP [dm3] 2R_22262082_SNP [dm6]	G	A	2.559e^-4	0.682	INTRON dve
3L	16090741	3L_16090741_SNP [dm3] 3L_16097641_SNP [dm6]	G	A	2.565e^-4	0.682	UPSTREAM ms_3_72Dt & 1 other INTERGENIC
2R	17437427	2R_17437427_SNP [dm3] 2R_21549922_SNP [dm6]	A	C	2.573e^-4	0.682	INTRON Egfr	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22985252	3R_22985252_SNP [dm3] 3R_27159530_SNP [dm6]	T	C	2.578e^-4	0.682	SYNONYMOUS_CODING grass	TF binding site mE1_TFBS_cad
2L	10604318	2L_10604318_SNP [dm3] 2L_10604318_SNP [dm6]	T	A	2.579e^-4	0.682	INTRON Trim9	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8789839	2R_8789839_SNP [dm3] 2R_12902334_SNP [dm6]	T	C	2.579e^-4	0.682	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	5362453	X_5362453_SNP [dm3] X_5468420_SNP [dm6]	C	G	2.581e^-4	0.682	INTRON SPR
3L	7055379	3L_7055379_SNP [dm3] 3L_7062279_SNP [dm6]	C	T	2.583e^-4	0.682	INTRON CG8641	TF binding site mE1_TFBS_cad
X	17911107	X_17911107_SNP [dm3] X_18017074_SNP [dm6]	A	G	2.588e^-4	0.682	INTRON Sh
3R	22741722	3R_22741722_SNP [dm3] 3R_26916000_SNP [dm6]	A	C	2.593e^-4	0.682	INTRON sda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	7358201	2L_7358201_SNP [dm3] 2L_7358201_SNP [dm6]	T	G	2.595e^-4	0.682	INTERGENIC
2L	3831184	2L_3831184_SNP [dm3] 2L_3831184_SNP [dm6]	T	G	2.601e^-4	0.682	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4661530	2L_4661530_DEL [dm3] 2L_4661530_DEL [dm6]	AAACAAGGGCTATTAGAGAG...	A	2.603e^-4	0.682	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	1936359	3R_1936359_SNP [dm3] 3R_6110637_SNP [dm6]	A	T	2.604e^-4	0.682	DOWNSTREAM Obp83cd INTRON Obp83ef
X	10283038	X_10283038_DEL [dm3] X_10389005_DEL [dm6]	CC	C	2.605e^-4	0.682	INTRON flw
2R	6776241	2R_6776241_SNP [dm3] 2R_10888736_SNP [dm6]	G	A	2.617e^-4	0.682	SYNONYMOUS_CODING CG30020	TF binding site mE1_TFBS_cad
2R	18356505	2R_18356505_SNP [dm3] 2R_22469000_SNP [dm6]	T	C	2.626e^-4	0.682	INTRON CG10384
3L	9040072	3L_9040072_SNP [dm3] 3L_9046972_SNP [dm6]	T	G	2.633e^-4	0.682	UPSTREAM CG5144 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_ttk
2L	15334900	2L_15334900_SNP [dm3] 2L_15334900_SNP [dm6]	G	A	2.634e^-4	0.682	SYNONYMOUS_CODING esg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	11013279	3L_11013279_SNP [dm3] 3L_11020179_SNP [dm6]	C	G	2.636e^-4	0.682	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26947697	3R_26947697_SNP [dm3] 3R_31121975_SNP [dm6]	A	C	2.637e^-4	0.682	DOWNSTREAM Prosalpha3T INTERGENIC
2R	19198299	2R_19198299_SNP [dm3] 2R_23310776_SNP [dm6]	A	G	2.645e^-4	0.682	UPSTREAM Prosbeta5R1 INTERGENIC
2L	20951936	2L_20951936_DEL [dm3] 2L_20951936_DEL [dm6]	AAATT	A	2.646e^-4	0.682	INTERGENIC
3L	10132474	3L_10132474_SNP [dm3] 3L_10139374_SNP [dm6]	A	G	2.649e^-4	0.682	DOWNSTREAM dpr6 INTERGENIC
3R	26569284	3R_26569284_SNP [dm3] 3R_30743562_SNP [dm6]	C	A	2.649e^-4	0.682	NON_SYNONYMOUS_CODING CG15543	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	1965025	3R_1965025_SNP [dm3] 3R_6139303_SNP [dm6]	G	C	2.651e^-4	0.682	INTERGENIC
2L	2979401	2L_2979401_INS [dm3] 2L_2979401_INS [dm6]	G	GA	2.652e^-4	0.682	UPSTREAM CG9643 DOWNSTREAM CG3165 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14396702	2R_14396702_SNP [dm3] 2R_18509197_SNP [dm6]	C	G	2.654e^-4	0.682	INTERGENIC
2L	16397115	2L_16397115_SNP [dm3] 2L_16397115_SNP [dm6]	C	T	2.659e^-4	0.682	INTERGENIC
3R	5949485	3R_5949485_SNP [dm3] 3R_10123763_SNP [dm6]	C	G	2.660e^-4	0.682	NON_SYNONYMOUS_CODING knk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9226606	2R_9226606_SNP [dm3] 2R_13339101_SNP [dm6]	G	A	2.667e^-4	0.682	INTRON CR44206	TF binding site BDTNP1_TFBS_twi
3R	10135587	3R_10135587_SNP [dm3] 3R_14309865_SNP [dm6]	C	A	2.669e^-4	0.682	UTR_3_PRIME RpII15 UPSTREAM CG31321 DOWNSTREAM RpII15
3L	9263680	3L_9263680_SNP [dm3] 3L_9270580_SNP [dm6]	C	T	2.669e^-4	0.682	INTRON GluRIB
2L	4796775	2L_4796775_SNP [dm3] 2L_4796775_SNP [dm6]	C	T	2.670e^-4	0.682	UTR_3_PRIME Clect27 DOWNSTREAM CG3294
3L	9263138	3L_9263138_SNP [dm3] 3L_9270038_SNP [dm6]	G	A	2.671e^-4	0.682	INTRON GluRIB
3L	5943923	3L_5943923_SNP [dm3] 3L_5950823_SNP [dm6]	A	C	2.673e^-4	0.682	UPSTREAM CG33993 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	15480735	2R_15480735_SNP [dm3] 2R_19593230_SNP [dm6]	G	A	2.675e^-4	0.682	UPSTREAM CG16716 INTRON sm
3L	10820411	3L_10820411_SNP [dm3] 3L_10827311_SNP [dm6]	T	C	2.686e^-4	0.682	INTERGENIC
2R	19573975	2R_19573975_SNP [dm3] 2R_23686452_SNP [dm6]	A	T	2.695e^-4	0.682	UPSTREAM l_2_efl INTRON St3	TF binding site mE1_TFBS_cad
3L	3558298	3L_3558298_SNP [dm3] 3L_3558298_SNP [dm6]	G	C	2.695e^-4	0.682	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	14659911	X_14659911_SNP [dm3] X_14765878_SNP [dm6]	A	G	2.702e^-4	0.682	UPSTREAM CG15890 INTERGENIC
3R	9447941	3R_9447941_DEL [dm3] 3R_13622219_DEL [dm6]	TT	T	2.709e^-4	0.682	INTERGENIC
3L	16412664	3L_16412664_SNP [dm3] 3L_16419564_SNP [dm6]	G	A	2.717e^-4	0.682	UPSTREAM CG33158 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	5955668	X_5955668_SNP [dm3] X_6061635_SNP [dm6]	C	T	2.719e^-4	0.682	INTRON CG5921	TF binding site mE1_TFBS_chinmo
2R	10171811	2R_10171811_SNP [dm3] 2R_14284306_SNP [dm6]	T	A	2.723e^-4	0.682	INTRON Ih	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26470577	3R_26470577_SNP [dm3] 3R_30644855_SNP [dm6]	G	T	2.731e^-4	0.682	NON_SYNONYMOUS_CODING CG31013
3R	14670366	3R_14670366_SNP [dm3] 3R_18844644_SNP [dm6]	G	A	2.732e^-4	0.682	INTRON CG18208
3L	19200762	3L_19200762_SNP [dm3] 3L_19207662_SNP [dm6]	C	G	2.737e^-4	0.682	INTRON fz2	TF binding site mE1_TFBS_cad
2R	6454396	2R_6454396_SNP [dm3] 2R_10566891_SNP [dm6]	C	T	2.738e^-4	0.682	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	7973465	2L_7973465_SNP [dm3] 2L_7973465_SNP [dm6]	G	T	2.739e^-4	0.682	INTRON Snoo
X	20959858	X_20959858_SNP [dm3] X_21088831_SNP [dm6]	T	A	2.742e^-4	0.682	INTERGENIC
2R	16243931	2R_16243931_SNP [dm3] 2R_20356426_SNP [dm6]	A	T	2.742e^-4	0.682	INTERGENIC
2L	5867432	2L_5867432_SNP [dm3] 2L_5867432_SNP [dm6]	T	A	2.747e^-4	0.682	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9885349	3L_9885349_SNP [dm3] 3L_9892249_SNP [dm6]	A	G	2.749e^-4	0.682	SYNONYMOUS_CODING CalpB DOWNSTREAM CG6709 & 1 other	TF binding site mE1_TFBS_cad
X	5954169	X_5954169_SNP [dm3] X_6060136_SNP [dm6]	T	C	2.757e^-4	0.682	NON_SYNONYMOUS_CODING CG5921	TF binding site mE1_TFBS_chinmo
3R	7334913	3R_7334913_SNP [dm3] 3R_11509191_SNP [dm6]	C	T	2.758e^-4	0.682	INTERGENIC
X	2766331	X_2766331_SNP [dm3] X_2872298_SNP [dm6]	C	G	2.759e^-4	0.682	NON_SYNONYMOUS_CODING CG14416 INTRON kirre
3L	13373255	3L_13373255_SNP [dm3] 3L_13380155_SNP [dm6]	G	A	2.760e^-4	0.682	SYNONYMOUS_CODING CG14111 DOWNSTREAM SNCF & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	20947595	2L_20947595_SNP [dm3] 2L_20947595_SNP [dm6]	T	A	2.767e^-4	0.682	EXON CR44606
3L	9259233	3L_9259233_SNP [dm3] 3L_9266133_SNP [dm6]	C	T	2.768e^-4	0.682	INTRON GluRIB
3L	19362541	3L_19362541_SNP [dm3] 3L_19369441_SNP [dm6]	G	T	2.768e^-4	0.682	INTRON CG32206
3R	4459185	3R_4459185_SNP [dm3] 3R_8633463_SNP [dm6]	C	T	2.774e^-4	0.682	DOWNSTREAM Or85e INTERGENIC
2L	20800009	2L_20800009_SNP [dm3] 2L_20800009_SNP [dm6]	T	A	2.775e^-4	0.682	INTRON CG9328	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3R	19167960	3R_19167960_SNP [dm3] 3R_23342238_SNP [dm6]	C	T	2.776e^-4	0.682	INTRON pnt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	19373096	X_19373096_SNP [dm3] X_19479063_SNP [dm6]	A	G	2.781e^-4	0.682	SYNONYMOUS_CODING CG32533 UPSTREAM Nat1 DOWNSTREAM mRpS14	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9444458	2R_9444458_SNP [dm3] 2R_13556953_SNP [dm6]	G	A	2.787e^-4	0.682	NON_SYNONYMOUS_CODING link DOWNSTREAM snoRNA:Psi28S-1153 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	9859018	X_9859018_SNP [dm3] X_9964985_SNP [dm6]	A	G	2.791e^-4	0.682	UPSTREAM CG1889 & 1 other INTERGENIC
3R	8083723	3R_8083723_SNP [dm3] 3R_12258001_SNP [dm6]	C	T	2.791e^-4	0.682	UPSTREAM svp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	9800879	X_9800879_INS [dm3] X_9906846_INS [dm6]	T	TGGAAGGTAAACTCG...	2.792e^-4	0.682	INTERGENIC
3L	10144226	3L_10144226_SNP [dm3] 3L_10151126_SNP [dm6]	G	A	2.794e^-4	0.682	UPSTREAM CG8072 DOWNSTREAM snoRNA:MeU2-A31 INTRON dpr10
X	12057984	X_12057984_SNP [dm3] X_12163951_SNP [dm6]	A	T	2.795e^-4	0.682	INTRON Ten-a
3R	13142322	3R_13142322_SNP [dm3] 3R_17316600_SNP [dm6]	G	T	2.798e^-4	0.682	INTERGENIC
3L	8342501	3L_8342501_SNP [dm3] 3L_8349401_SNP [dm6]	G	T	2.798e^-4	0.682	SYNONYMOUS_CODING GAPcenA	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	20438248	3R_20438248_SNP [dm3] 3R_24612526_SNP [dm6]	G	A	2.813e^-4	0.682	INTRON mld
3L	19237687	3L_19237687_SNP [dm3] 3L_19244587_SNP [dm6]	C	T	2.816e^-4	0.682	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9146125	2L_9146125_SNP [dm3] 2L_9146125_SNP [dm6]	T	C	2.822e^-4	0.682	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5083989	2L_5083989_SNP [dm3] 2L_5083989_SNP [dm6]	C	A	2.827e^-4	0.682	INTRON pgant5	TF binding site mE1_TFBS_cad
3R	7341005	3R_7341005_SNP [dm3] 3R_11515283_SNP [dm6]	G	A	2.831e^-4	0.682	INTERGENIC
3L	2372712	3L_2372712_SNP [dm3] 3L_2372712_SNP [dm6]	A	C	2.833e^-4	0.682	SYNONYMOUS_CODING CG8993 UPSTREAM CG1317 DOWNSTREAM mRpL23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	6099307	2R_6099307_SNP [dm3] 2R_10211802_SNP [dm6]	G	A	2.839e^-4	0.682	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	4609124	3L_4609124_SNP [dm3] 3L_4609124_SNP [dm6]	C	T	2.839e^-4	0.682	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	19198338	2R_19198338_SNP [dm3] 2R_23310815_SNP [dm6]	C	A	2.842e^-4	0.682	UPSTREAM Prosbeta5R1 INTERGENIC
2L	4465160	2L_4465160_SNP [dm3] 2L_4465160_SNP [dm6]	A	C	2.854e^-4	0.682	UPSTREAM CG17840 DOWNSTREAM CG15436 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	8159121	3R_8159121_SNP [dm3] 3R_12333399_SNP [dm6]	C	T	2.864e^-4	0.682	INTERGENIC
3L	4514486	3L_4514486_SNP [dm3] 3L_4514486_SNP [dm6]	C	T	2.867e^-4	0.682	SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_chinmo
2L	10273144	2L_10273144_SNP [dm3] 2L_10273144_SNP [dm6]	T	C	2.872e^-4	0.682	UPSTREAM trk INTRON Utx
3L	810706	3L_810706_SNP [dm3] 3L_810706_SNP [dm6]	C	A	2.883e^-4	0.682	INTERGENIC
3L	13398306	3L_13398306_SNP [dm3] 3L_13405206_SNP [dm6]	T	C	2.883e^-4	0.682	INTERGENIC	TF binding site mE1_TFBS_cad
2L	6715619	2L_6715619_SNP [dm3] 2L_6715619_SNP [dm6]	G	A	2.885e^-4	0.682	INTRON AkhR	TF binding site BDTNP1_TFBS_dl
3L	16304141	3L_16304141_SNP [dm3] 3L_16311041_SNP [dm6]	T	A	2.890e^-4	0.682	EXON CR32160
2R	9784569	2R_9784569_SNP [dm3] 2R_13897064_SNP [dm6]	C	T	2.894e^-4	0.682	INTRON shot	TF binding site mE1_TFBS_cnc
2L	20702122	2L_20702122_SNP [dm3] 2L_20702122_SNP [dm6]	G	A	2.895e^-4	0.682	INTRON Hr38
3L	676993	3L_676993_SNP [dm3] 3L_676993_SNP [dm6]	C	T	2.899e^-4	0.682	DOWNSTREAM CG17129 INTERGENIC
3L	13855598	3L_13855598_SNP [dm3] 3L_13862498_SNP [dm6]	A	C	2.900e^-4	0.682	INTRON CG8745	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	20803491	3R_20803491_SNP [dm3] 3R_24977769_SNP [dm6]	C	T	2.901e^-4	0.682	INTERGENIC	TF binding site mE1_TFBS_cad
3R	27650029	3R_27650029_SNP [dm3] 3R_31824307_SNP [dm6]	T	C	2.902e^-4	0.682	INTRON RhoGAP100F
3L	2364711	3L_2364711_SNP [dm3] 3L_2364711_SNP [dm6]	T	A	2.905e^-4	0.682	INTERGENIC
2L	1176207	2L_1176207_SNP [dm3] 2L_1176207_SNP [dm6]	C	T	2.910e^-4	0.682	SYNONYMOUS_CODING CG4887	TF binding site BDTNP1_TFBS_sna
3R	12748377	3R_12748377_SNP [dm3] 3R_16922655_SNP [dm6]	A	G	2.911e^-4	0.682	EXON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13085533	3L_13085533_SNP [dm3] 3L_13092433_SNP [dm6]	C	T	2.915e^-4	0.682	INTERGENIC
2L	1103471	2L_1103471_SNP [dm3] 2L_1103471_SNP [dm6]	T	A	2.921e^-4	0.682	UTR_3_PRIME mtRNApol UPSTREAM CG4629 DOWNSTREAM mtRNApol
3L	8507205	3L_8507205_SNP [dm3] 3L_8514105_SNP [dm6]	T	A	2.922e^-4	0.682	UTR_3_PRIME CG6683 INTRON CG6765	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19024363	3R_19024363_SNP [dm3] 3R_23198641_SNP [dm6]	C	A	2.924e^-4	0.682	INTRON cnc
3R	2870860	3R_2870860_DEL [dm3] 3R_7045138_DEL [dm6]	CAAGCAAC	C	2.931e^-4	0.682	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20587339	3L_20587339_SNP [dm3] 3L_20594239_SNP [dm6]	T	G	2.937e^-4	0.682	INTERGENIC
3R	1934497	3R_1934497_SNP [dm3] 3R_6108775_SNP [dm6]	C	G	2.939e^-4	0.682	DOWNSTREAM Obp83ef INTRON Obp83cd
3R	17384258	3R_17384258_SNP [dm3] 3R_21558536_SNP [dm6]	G	C	2.940e^-4	0.682	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2811037	3L_2811037_SNP [dm3] 3L_2811037_SNP [dm6]	A	T	2.942e^-4	0.682	INTRON CG43444
3R	14671203	3R_14671203_SNP [dm3] 3R_18845481_SNP [dm6]	A	G	2.943e^-4	0.682	INTRON CG18208
2R	16240581	2R_16240581_SNP [dm3] 2R_20353076_SNP [dm6]	C	T	2.945e^-4	0.682	INTERGENIC
2R	5343026	2R_5343026_SNP [dm3] 2R_9455521_SNP [dm6]	T	C	2.947e^-4	0.682	UPSTREAM CG33757 INTRON Camta
X	5703139	X_5703139_SNP [dm3] X_5809106_SNP [dm6]	G	A	2.957e^-4	0.682	INTRON Prosbeta2R1	TF binding site mE1_TFBS_chinmo
2R	17029070	2R_17029070_SNP [dm3] 2R_21141565_SNP [dm6]	G	A	2.959e^-4	0.682	UTR_5_PRIME Magi UPSTREAM CG9406	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
3L	13249734	3L_13249734_SNP [dm3] 3L_13256634_SNP [dm6]	T	C	2.962e^-4	0.682	INTRON caps
3R	7929435	3R_7929435_SNP [dm3] 3R_12103713_SNP [dm6]	A	T	2.966e^-4	0.682	INTRON dpr17
3R	17747584	3R_17747584_SNP [dm3] 3R_21921862_SNP [dm6]	T	G	2.967e^-4	0.682	INTERGENIC
3R	25904880	3R_25904880_SNP [dm3] 3R_30079158_SNP [dm6]	G	A	2.967e^-4	0.682	INTRON sima
2R	15469553	2R_15469553_SNP [dm3] 2R_19582048_SNP [dm6]	C	T	2.972e^-4	0.682	INTRON sm
2R	19198285	2R_19198285_SNP [dm3] 2R_23310762_SNP [dm6]	A	G	2.977e^-4	0.682	UPSTREAM Prosbeta5R1 INTERGENIC
2L	1937668	2L_1937668_SNP [dm3] 2L_1937668_SNP [dm6]	A	T	2.982e^-4	0.682	DOWNSTREAM tRNA:G3:22BCa INTRON CG7337	TF binding site BDTNP1_TFBS_z
2L	4344967	2L_4344967_SNP [dm3] 2L_4344967_SNP [dm6]	A	G	2.982e^-4	0.682	UTR_3_PRIME Atet	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	1677424	2L_1677424_SNP [dm3] 2L_1677424_SNP [dm6]	G	A	2.993e^-4	0.682	INTRON chinmo
2L	20778947	2L_20778947_SNP [dm3] 2L_20778947_SNP [dm6]	G	T	2.998e^-4	0.682	INTRON cad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
X	22239084	X_22239084_INS [dm3] X_22837248_INS [dm6]	A	AA	3.004e^-4	0.682	UPSTREAM fog INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26583156	3R_26583156_SNP [dm3] 3R_30757434_SNP [dm6]	C	T	3.008e^-4	0.682	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	20772048	2L_20772048_SNP [dm3] 2L_20772048_SNP [dm6]	G	A	3.014e^-4	0.682	INTRON cad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22991016	3R_22991016_SNP [dm3] 3R_27165294_SNP [dm6]	T	C	3.015e^-4	0.682	SYNONYMOUS_CODING CG34293 UPSTREAM spn-D DOWNSTREAM ppk31	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4796791	2L_4796791_SNP [dm3] 2L_4796791_SNP [dm6]	A	G	3.017e^-4	0.682	UTR_3_PRIME Clect27 DOWNSTREAM CG3294
2L	1933266	2L_1933266_SNP [dm3] 2L_1933266_SNP [dm6]	G	A	3.019e^-4	0.682	INTRON CG7337
2L	5469791	2L_5469791_INS [dm3] 2L_5469791_INS [dm6]	A	AA	3.022e^-4	0.682	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19287487	3L_19287487_SNP [dm3] 3L_19294387_SNP [dm6]	A	G	3.022e^-4	0.682	UPSTREAM fal INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	1594400	2L_1594400_SNP [dm3] 2L_1594400_SNP [dm6]	G	C	3.023e^-4	0.682	DOWNSTREAM CG31935 INTRON haf
3R	4259970	3R_4259970_SNP [dm3] 3R_8434248_SNP [dm6]	G	A	3.029e^-4	0.682	INTRON CG45263
3R	16043604	3R_16043604_SNP [dm3] 3R_20217882_SNP [dm6]	G	C	3.030e^-4	0.682	INTRON Nlg4
3L	16389658	3L_16389658_SNP [dm3] 3L_16396558_SNP [dm6]	A	C	3.033e^-4	0.682	UTR_3_PRIME Grp DOWNSTREAM Grp INTRON CG44836
3R	18457306	3R_18457306_SNP [dm3] 3R_22631584_SNP [dm6]	G	A	3.033e^-4	0.682	DOWNSTREAM CR43474 INTRON loco	regulatory region REDfly_CRMs
X	3112396	X_3112396_SNP [dm3] X_3218363_SNP [dm6]	T	C	3.040e^-4	0.682	INTRON dnc
3R	17249096	3R_17249096_SNP [dm3] 3R_21423374_SNP [dm6]	C	T	3.049e^-4	0.682	INTRON lbl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
3R	4289125	3R_4289125_SNP [dm3] 3R_8463403_SNP [dm6]	T	C	3.060e^-4	0.682	INTRON CG45263
3L	11946950	3L_11946950_SNP [dm3] 3L_11953850_SNP [dm6]	G	T	3.060e^-4	0.682	UPSTREAM CG7248 & 1 other INTERGENIC
2R	9444473	2R_9444473_SNP [dm3] 2R_13556968_SNP [dm6]	G	A	3.062e^-4	0.682	SYNONYMOUS_CODING link DOWNSTREAM snoRNA:Psi28S-1153 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	7055166	3L_7055166_SNP [dm3] 3L_7062066_SNP [dm6]	A	C	3.066e^-4	0.682	INTRON CG8641
3L	6946318	3L_6946318_SNP [dm3] 3L_6953218_SNP [dm6]	C	T	3.070e^-4	0.682	UTR_3_PRIME CG10077 INTRON CG10077
3R	22991010	3R_22991010_SNP [dm3] 3R_27165288_SNP [dm6]	T	C	3.071e^-4	0.682	SYNONYMOUS_CODING CG34293 UPSTREAM spn-D DOWNSTREAM ppk31	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	13908904	3L_13908904_SNP [dm3] 3L_13915804_SNP [dm6]	G	C	3.074e^-4	0.682	INTRON Rgl
3L	11070418	3L_11070418_SNP [dm3] 3L_11077318_SNP [dm6]	T	C	3.074e^-4	0.682	SYNONYMOUS_CODING CG7839	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17029069	2R_17029069_SNP [dm3] 2R_21141564_SNP [dm6]	A	G	3.078e^-4	0.682	UTR_5_PRIME Magi UPSTREAM CG9406	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
3R	1850636	3R_1850636_SNP [dm3] 3R_6024914_SNP [dm6]	T	C	3.079e^-4	0.682	DOWNSTREAM CG11459 INTERGENIC
2R	12314165	2R_12314165_SNP [dm3] 2R_16426660_SNP [dm6]	C	A	3.080e^-4	0.682	SYNONYMOUS_CODING Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	7006817	X_7006817_SNP [dm3] X_7112784_SNP [dm6]	T	C	3.085e^-4	0.682	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1692261	3L_1692261_SNP [dm3] 3L_1692261_SNP [dm6]	A	T	3.086e^-4	0.682	INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14695023	3L_14695023_SNP [dm3] 3L_14701923_SNP [dm6]	T	C	3.089e^-4	0.682	UPSTREAM CG17177 INTRON ome
3R	7340997	3R_7340997_SNP [dm3] 3R_11515275_SNP [dm6]	A	G	3.091e^-4	0.682	INTERGENIC
3L	7055092	3L_7055092_SNP [dm3] 3L_7061992_SNP [dm6]	C	A	3.091e^-4	0.682	SYNONYMOUS_CODING CG8641
3R	18040737	3R_18040737_SNP [dm3] 3R_22215015_SNP [dm6]	G	C	3.093e^-4	0.682	INTRON SKIP & 1 other	TF binding site mE1_TFBS_inv
3L	5140526	3L_5140526_SNP [dm3] 3L_5147426_SNP [dm6]	C	A	3.102e^-4	0.682	INTRON Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	9226378	2R_9226378_SNP [dm3] 2R_13338873_SNP [dm6]	T	A	3.103e^-4	0.682	INTRON CR44206	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	13171517	2L_13171517_SNP [dm3] 2L_13171517_SNP [dm6]	A	G	3.106e^-4	0.682	SYNONYMOUS_CODING Sfmbt
X	19581730	X_19581730_SNP [dm3] X_19687697_SNP [dm6]	A	T	3.108e^-4	0.682	DOWNSTREAM CG14227 & 1 other INTERGENIC
3L	12969414	3L_12969414_SNP [dm3] 3L_12976314_SNP [dm6]	T	C	3.109e^-4	0.682	INTERGENIC
X	13967790	X_13967790_SNP [dm3] X_14073757_SNP [dm6]	A	T	3.109e^-4	0.682	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3022566	X_3022566_SNP [dm3] X_3128533_SNP [dm6]	A	C	3.112e^-4	0.682	UPSTREAM kirre INTRON kirre
2R	14367268	2R_14367268_SNP [dm3] 2R_18479763_SNP [dm6]	A	G	3.113e^-4	0.682	INTRON CG30116
3R	2019412	3R_2019412_SNP [dm3] 3R_6193690_SNP [dm6]	G	C	3.114e^-4	0.682	SYNONYMOUS_CODING NPFR	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25457534	3R_25457534_SNP [dm3] 3R_29631812_SNP [dm6]	A	C	3.128e^-4	0.682	UTR_3_PRIME Dop1R2
3R	24043451	3R_24043451_SNP [dm3] 3R_28217729_SNP [dm6]	A	T	3.133e^-4	0.682	INTRON CG34354
3L	13153625	3L_13153625_SNP [dm3] 3L_13160525_SNP [dm6]	G	C	3.139e^-4	0.682	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19269033	3R_19269033_SNP [dm3] 3R_23443311_SNP [dm6]	A	G	3.142e^-4	0.682	INTRON CG4374	TF binding site mE1_TFBS_cad
2R	12153332	2R_12153332_SNP [dm3] 2R_16265827_SNP [dm6]	A	G	3.145e^-4	0.682	NON_SYNONYMOUS_CODING csul
2R	15964421	2R_15964421_SNP [dm3] 2R_20076916_SNP [dm6]	C	T	3.148e^-4	0.682	INTERGENIC
3R	18040466	3R_18040466_SNP [dm3] 3R_22214744_SNP [dm6]	G	C	3.153e^-4	0.682	NON_SYNONYMOUS_CODING Gld2 INTRON SKIP	TF binding site mE1_TFBS_inv
3R	1943362	3R_1943362_SNP [dm3] 3R_6117640_SNP [dm6]	A	T	3.154e^-4	0.682	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17651431	3L_17651431_SNP [dm3] 3L_17658331_SNP [dm6]	C	T	3.162e^-4	0.682	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1599537	2L_1599537_INS [dm3] 2L_1599537_INS [dm6]	C	CTGCTAGAC	3.163e^-4	0.682	INTRON haf & 1 other
3L	1786443	3L_1786443_SNP [dm3] 3L_1786443_SNP [dm6]	G	A	3.166e^-4	0.682	SYNONYMOUS_CODING alpha-Spec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
3R	1936812	3R_1936812_SNP [dm3] 3R_6111090_SNP [dm6]	T	G	3.169e^-4	0.682	UPSTREAM Obp83ef DOWNSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
2L	3435480	2L_3435480_SNP [dm3] 2L_3435480_SNP [dm6]	C	T	3.171e^-4	0.682	INTERGENIC
2R	4839406	2R_4839406_SNP [dm3] 2R_8951901_SNP [dm6]	T	C	3.173e^-4	0.682	UPSTREAM CG33199 & 2 others INTRON Tom7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	3633912	2R_3633912_SNP [dm3] 2R_7746407_SNP [dm6]	T	C	3.176e^-4	0.682	INTRON CG30497 & 1 other	TF binding site BDTNP1_TFBS_z
2R	3633916	2R_3633916_SNP [dm3] 2R_7746411_SNP [dm6]	T	A	3.176e^-4	0.682	INTRON CG30497 & 1 other	TF binding site BDTNP1_TFBS_z
2L	13205785	2L_13205785_SNP [dm3] 2L_13205785_SNP [dm6]	T	A	3.178e^-4	0.682	INTRON Pect	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	17936629	3L_17936629_SNP [dm3] 3L_17943529_SNP [dm6]	T	C	3.185e^-4	0.682	INTRON CG43174
3L	8245071	3L_8245071_INS [dm3] 3L_8251971_INS [dm6]	T	TCATACAT	3.185e^-4	0.682	INTRON Dscam4
X	5955629	X_5955629_SNP [dm3] X_6061596_SNP [dm6]	A	T	3.190e^-4	0.682	INTRON CG5921	TF binding site mE1_TFBS_chinmo
3R	4291403	3R_4291403_SNP [dm3] 3R_8465681_SNP [dm6]	G	A	3.191e^-4	0.682	INTRON CG45263	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14265020	3L_14265020_INS [dm3] 3L_14271920_INS [dm6]	A	AA	3.192e^-4	0.682	INTERGENIC
3R	26964150	3R_26964150_SNP [dm3] 3R_31138428_SNP [dm6]	A	G	3.193e^-4	0.682	SYNONYMOUS_CODING Gycbeta100B
2L	1095179	2L_1095179_SNP [dm3] 2L_1095179_SNP [dm6]	A	G	3.197e^-4	0.682	INTRON CG4629
3R	7551026	3R_7551026_SNP [dm3] 3R_11725304_SNP [dm6]	A	G	3.198e^-4	0.682	INTRON CG12594	TF binding site mE1_TFBS_inv
2R	10850954	2R_10850954_SNP [dm3] 2R_14963449_SNP [dm6]	T	A	3.213e^-4	0.684	UTR_5_PRIME ckn UPSTREAM aPKC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16319104	2R_16319104_SNP [dm3] 2R_20431599_SNP [dm6]	C	A	3.214e^-4	0.684	INTRON CG12484
2R	14506677	2R_14506677_SNP [dm3] 2R_18619172_SNP [dm6]	T	C	3.216e^-4	0.684	UTR_5_PRIME CG5493 DOWNSTREAM CG5327	TF binding site BDTNP1_TFBS_z
3L	21801607	3L_21801607_SNP [dm3] 3L_21808507_SNP [dm6]	C	T	3.219e^-4	0.684	UPSTREAM eg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13745032	3R_13745032_SNP [dm3] 3R_17919310_SNP [dm6]	G	A	3.229e^-4	0.685	UPSTREAM cpo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26970969	3R_26970969_SNP [dm3] 3R_31145247_SNP [dm6]	C	A	3.233e^-4	0.685	INTRON Gycbeta100B
2L	5715803	2L_5715803_SNP [dm3] 2L_5715803_SNP [dm6]	G	A	3.240e^-4	0.685	SYNONYMOUS_CODING CG14007 UPSTREAM CG34011 EXON CR44818
2L	2611303	2L_2611303_INS [dm3] 2L_2611303_INS [dm6]	T	TT	3.241e^-4	0.685	DOWNSTREAM CG15395 INTERGENIC
2R	14289692	2R_14289692_SNP [dm3] 2R_18402187_SNP [dm6]	T	C	3.250e^-4	0.686	UPSTREAM CR43688 DOWNSTREAM GstE3 EXON CR43687	TF binding site mE1_TFBS_Trl
2R	12270239	2R_12270239_DEL [dm3] 2R_16382734_DEL [dm6]	AAG	A	3.252e^-4	0.686	UTR_3_PRIME CG43187 DOWNSTREAM CG43187
2R	17360353	2R_17360353_SNP [dm3] 2R_21472848_SNP [dm6]	C	T	3.259e^-4	0.687	INTRON Sdc
3R	1895584	3R_1895584_SNP [dm3] 3R_6069862_SNP [dm6]	C	T	3.265e^-4	0.687	INTERGENIC
3L	17677747	3L_17677747_SNP [dm3] 3L_17684647_SNP [dm6]	T	C	3.273e^-4	0.687	INTERGENIC
2R	4919615	2R_4919615_SNP [dm3] 2R_9032110_SNP [dm6]	C	T	3.273e^-4	0.687	INTERGENIC
3R	17768352	3R_17768352_SNP [dm3] 3R_21942630_SNP [dm6]	T	C	3.274e^-4	0.687	INTERGENIC
3R	27598508	3R_27598508_SNP [dm3] 3R_31772786_SNP [dm6]	G	A	3.285e^-4	0.687	SYNONYMOUS_CODING sip3 UPSTREAM CG2135	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	1907532	3R_1907532_SNP [dm3] 3R_6081810_SNP [dm6]	G	T	3.291e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	20343282	3R_20343282_SNP [dm3] 3R_24517560_SNP [dm6]	G	A	3.302e^-4	0.687	UPSTREAM Pp1alpha-96A INTRON CG13617	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	13424559	3R_13424559_SNP [dm3] 3R_17598837_SNP [dm6]	G	A	3.303e^-4	0.687	INTERGENIC
3R	26969574	3R_26969574_SNP [dm3] 3R_31143852_SNP [dm6]	T	G	3.308e^-4	0.687	INTRON Gycbeta100B
3R	2010041	3R_2010041_SNP [dm3] 3R_6184319_SNP [dm6]	T	C	3.321e^-4	0.687	UPSTREAM CR31562 INTERGENIC
3R	18834446	3R_18834446_SNP [dm3] 3R_23008724_SNP [dm6]	A	T	3.321e^-4	0.687	INTRON CG34375
2L	4670186	2L_4670186_SNP [dm3] 2L_4670186_SNP [dm6]	A	G	3.325e^-4	0.687	INTERGENIC
2R	19028089	2R_19028089_SNP [dm3] 2R_23140566_SNP [dm6]	A	G	3.327e^-4	0.687	UTR_5_PRIME CG13544
2L	8449155	2L_8449155_SNP [dm3] 2L_8449155_SNP [dm6]	C	T	3.327e^-4	0.687	DOWNSTREAM fu12 INTRON U26
2L	4484248	2L_4484248_SNP [dm3] 2L_4484248_SNP [dm6]	T	C	3.331e^-4	0.687	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3603375	2L_3603375_SNP [dm3] 2L_3603375_SNP [dm6]	T	G	3.346e^-4	0.687	DOWNSTREAM odd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	3603384	2L_3603384_DEL [dm3] 2L_3603384_DEL [dm6]	TTGAGACAAAGA...	T	3.346e^-4	0.687	DOWNSTREAM odd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	3603400	2L_3603400_SNP [dm3] 2L_3603400_SNP [dm6]	A	G	3.346e^-4	0.687	DOWNSTREAM odd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	3603401	2L_3603401_DEL [dm3] 2L_3603401_DEL [dm6]	ATCTGAAATTGACA...	A	3.346e^-4	0.687	DOWNSTREAM odd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	16408629	X_16408629_SNP [dm3] X_16514596_SNP [dm6]	T	C	3.350e^-4	0.687	INTRON para
3R	17747545	3R_17747545_SNP [dm3] 3R_21921823_SNP [dm6]	T	C	3.354e^-4	0.687	INTERGENIC
2R	7027781	2R_7027781_SNP [dm3] 2R_11140276_SNP [dm6]	C	T	3.356e^-4	0.687	SYNONYMOUS_CODING CG13229 DOWNSTREAM BBS4
3L	14566460	3L_14566460_SNP [dm3] 3L_14573360_SNP [dm6]	T	A	3.363e^-4	0.687	INTERGENIC
3R	23745320	3R_23745320_SNP [dm3] 3R_27919598_SNP [dm6]	A	C	3.364e^-4	0.687	UPSTREAM CG33213 DOWNSTREAM CG12259 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	13406277	2R_13406277_SNP [dm3] 2R_17518772_SNP [dm6]	G	A	3.369e^-4	0.687	SYNONYMOUS_CODING CG4866 UPSTREAM APC10 DOWNSTREAM Patronin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	1958423	3R_1958423_SNP [dm3] 3R_6132701_SNP [dm6]	C	A	3.374e^-4	0.687	INTERGENIC
3L	1687828	3L_1687828_SNP [dm3] 3L_1687828_SNP [dm6]	G	T	3.375e^-4	0.687	UPSTREAM CG7991 INTRON CG7991
3R	1936196	3R_1936196_SNP [dm3] 3R_6110474_SNP [dm6]	T	C	3.376e^-4	0.687	DOWNSTREAM Obp83cd INTRON Obp83ef
3R	13432535	3R_13432535_SNP [dm3] 3R_17606813_SNP [dm6]	C	T	3.377e^-4	0.687	SYNONYMOUS_CODING sll	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	10013496	3R_10013496_SNP [dm3] 3R_14187774_SNP [dm6]	T	A	3.379e^-4	0.687	INTRON Dop1R1
X	22277267	X_22277267_SNP [dm3] X_22875431_SNP [dm6]	A	G	3.384e^-4	0.687	DOWNSTREAM CG34334 INTRON CG42346
3L	676950	3L_676950_DEL [dm3] 3L_676950_DEL [dm6]	CCC	C	3.388e^-4	0.687	DOWNSTREAM CG17129 INTERGENIC
3R	21288214	3R_21288214_SNP [dm3] 3R_25462492_SNP [dm6]	G	C	3.394e^-4	0.687	INTRON Fur1
2L	14809309	2L_14809309_SNP [dm3] 2L_14809309_SNP [dm6]	A	T	3.397e^-4	0.687	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9447928	3R_9447928_SNP [dm3] 3R_13622206_SNP [dm6]	T	C	3.398e^-4	0.687	INTERGENIC
X	21891784	X_21891784_SNP [dm3] X_22489948_SNP [dm6]	T	A	3.399e^-4	0.687	INTRON l_1_G0196 & 1 other
2L	1613883	2L_1613883_SNP [dm3] 2L_1613883_SNP [dm6]	G	A	3.405e^-4	0.687	INTRON RFeSP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	23159905	3R_23159905_SNP [dm3] 3R_27334183_SNP [dm6]	T	A	3.408e^-4	0.687	INTERGENIC
3L	17984703	3L_17984703_SNP [dm3] 3L_17991603_SNP [dm6]	A	G	3.411e^-4	0.687	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10217324	3R_10217324_SNP [dm3] 3R_14391602_SNP [dm6]	A	T	3.413e^-4	0.687	DOWNSTREAM cv-c INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
3L	11164970	3L_11164970_SNP [dm3] 3L_11171870_SNP [dm6]	G	T	3.418e^-4	0.687	SYNONYMOUS_CODING CG7616	TF binding site mE1_TFBS_cad
3L	3747045	3L_3747045_SNP [dm3] 3L_3747045_SNP [dm6]	G	T	3.420e^-4	0.687	UPSTREAM CG32264 INTRON CG32264
2L	3464017	2L_3464017_SNP [dm3] 2L_3464017_SNP [dm6]	A	G	3.421e^-4	0.687	SYNONYMOUS_CODING msl-2 UPSTREAM mir-4971	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	4457446	X_4457446_SNP [dm3] X_4563413_SNP [dm6]	T	A	3.423e^-4	0.687	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8083744	3R_8083744_SNP [dm3] 3R_12258022_SNP [dm6]	T	C	3.429e^-4	0.688	UPSTREAM svp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	14051390	3R_14051390_SNP [dm3] 3R_18225668_SNP [dm6]	G	A	3.433e^-4	0.688	SYNONYMOUS_CODING CG7168 UPSTREAM Mdh2 DOWNSTREAM CG7993	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3915869	2L_3915869_SNP [dm3] 2L_3915869_SNP [dm6]	A	G	3.441e^-4	0.689	INTRON fred
3R	14370005	3R_14370005_SNP [dm3] 3R_18544283_SNP [dm6]	T	G	3.449e^-4	0.689	INTRON fru
3R	10579778	3R_10579778_SNP [dm3] 3R_14754056_SNP [dm6]	C	G	3.450e^-4	0.689	NON_SYNONYMOUS_CODING CG7362 INTRON jvl	TF binding site mE1_TFBS_cad
3R	24094593	3R_24094593_SNP [dm3] 3R_28268871_SNP [dm6]	G	C	3.452e^-4	0.689	INTERGENIC
3R	13672261	3R_13672261_SNP [dm3] 3R_17846539_SNP [dm6]	T	C	3.457e^-4	0.689	INTRON tinc
3L	13398361	3L_13398361_SNP [dm3] 3L_13405261_SNP [dm6]	C	A	3.459e^-4	0.689	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12293059	3L_12293059_SNP [dm3] 3L_12299959_SNP [dm6]	G	A	3.465e^-4	0.689	INTERGENIC
3R	19399288	3R_19399288_SNP [dm3] 3R_23573566_SNP [dm6]	G	A	3.472e^-4	0.689	NON_SYNONYMOUS_CODING beat-IV	TF binding site mE1_TFBS_chinmo
3L	19209665	3L_19209665_SNP [dm3] 3L_19216565_SNP [dm6]	T	A	3.473e^-4	0.689	INTRON fz2
3L	2364761	3L_2364761_SNP [dm3] 3L_2364761_SNP [dm6]	T	G	3.476e^-4	0.689	INTERGENIC
3L	4516517	3L_4516517_SNP [dm3] 3L_4516517_SNP [dm6]	G	A	3.484e^-4	0.689	INTRON Tie	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	557032	3L_557032_SNP [dm3] 3L_557032_SNP [dm6]	C	G	3.485e^-4	0.689	INTRON hipk
2L	14750274	2L_14750274_SNP [dm3] 2L_14750274_SNP [dm6]	A	C	3.488e^-4	0.689	INTERGENIC
3L	5275011	3L_5275011_SNP [dm3] 3L_5281911_SNP [dm6]	C	A	3.491e^-4	0.689	INTERGENIC
X	9492453	X_9492453_SNP [dm3] X_9598420_SNP [dm6]	A	G	3.494e^-4	0.689	INTERGENIC
3R	7312907	3R_7312907_SNP [dm3] 3R_11487185_SNP [dm6]	A	G	3.507e^-4	0.691	EXON CR45581
3R	21380862	3R_21380862_SNP [dm3] 3R_25555140_SNP [dm6]	A	G	3.511e^-4	0.691	INTRON msi
3R	26972039	3R_26972039_SNP [dm3] 3R_31146317_SNP [dm6]	G	T	3.516e^-4	0.691	INTRON Gycbeta100B
X	10215572	X_10215572_SNP [dm3] X_10321539_SNP [dm6]	G	A	3.528e^-4	0.691	INTRON alpha-Man-I
X	11181864	X_11181864_SNP [dm3] X_11287831_SNP [dm6]	T	A	3.534e^-4	0.691	INTRON CG44422
3L	5872664	3L_5872664_SNP [dm3] 3L_5879564_SNP [dm6]	G	T	3.540e^-4	0.691	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27638099	3R_27638099_SNP [dm3] 3R_31812377_SNP [dm6]	T	C	3.541e^-4	0.691	UPSTREAM RhoGAP100F & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3R	7317376	3R_7317376_SNP [dm3] 3R_11491654_SNP [dm6]	G	T	3.545e^-4	0.691	INTERGENIC
2L	6458492	2L_6458492_SNP [dm3] 2L_6458492_SNP [dm6]	A	G	3.552e^-4	0.691	SYNONYMOUS_CODING frj DOWNSTREAM CG16947
3R	6748409	3R_6748409_SNP [dm3] 3R_10922687_SNP [dm6]	C	T	3.558e^-4	0.691	INTERGENIC
3L	13083549	3L_13083549_SNP [dm3] 3L_13090449_SNP [dm6]	T	C	3.560e^-4	0.691	UPSTREAM CG11251 INTERGENIC
3L	9507191	3L_9507191_SNP [dm3] 3L_9514091_SNP [dm6]	A	G	3.560e^-4	0.691	UPSTREAM CG33702 & 1 other DOWNSTREAM CG33700 INTERGENIC
3R	9447957	3R_9447957_SNP [dm3] 3R_13622235_SNP [dm6]	T	A	3.564e^-4	0.691	INTERGENIC
2R	10882909	2R_10882909_SNP [dm3] 2R_14995404_SNP [dm6]	A	T	3.568e^-4	0.691	DOWNSTREAM CR43830 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	22985711	3R_22985711_SNP [dm3] 3R_27159989_SNP [dm6]	T	C	3.575e^-4	0.691	DOWNSTREAM grass INTERGENIC
2L	3603398	2L_3603398_SNP [dm3] 2L_3603398_SNP [dm6]	A	T	3.577e^-4	0.691	DOWNSTREAM odd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	12270751	2R_12270751_SNP [dm3] 2R_16383246_SNP [dm6]	T	A	3.582e^-4	0.691	UTR_3_PRIME CG43187	transposable element FlyBase
X	5440364	X_5440364_SNP [dm3] X_5546331_SNP [dm6]	C	T	3.582e^-4	0.691	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	11625278	3R_11625278_SNP [dm3] 3R_15799556_SNP [dm6]	T	C	3.582e^-4	0.691	SYNONYMOUS_CODING nsl1 UTR_3_PRIME nsl1
2L	3848892	2L_3848892_SNP [dm3] 2L_3848892_SNP [dm6]	A	T	3.585e^-4	0.691	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2R	17315803	2R_17315803_SNP [dm3] 2R_21428298_SNP [dm6]	A	G	3.591e^-4	0.691	INTRON Sdc
3R	1882026	3R_1882026_SNP [dm3] 3R_6056304_SNP [dm6]	A	G	3.593e^-4	0.691	SYNONYMOUS_CODING CG15580
X	10416449	X_10416449_SNP [dm3] X_10522416_SNP [dm6]	C	G	3.602e^-4	0.691	INTRON spri
X	10428449	X_10428449_SNP [dm3] X_10534416_SNP [dm6]	A	G	3.619e^-4	0.691	INTRON spri
2R	19335861	2R_19335861_SNP [dm3] 2R_23448338_SNP [dm6]	C	G	3.621e^-4	0.691	INTRON CG43795	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3204455	3L_3204455_SNP [dm3] 3L_3204455_SNP [dm6]	T	A	3.624e^-4	0.691	UPSTREAM CG33159 DOWNSTREAM CG32277 INTRON gry	TF binding site mE1_TFBS_cad
2R	18323437	2R_18323437_SNP [dm3] 2R_22435932_SNP [dm6]	C	A	3.625e^-4	0.691	INTERGENIC
3R	6805252	3R_6805252_SNP [dm3] 3R_10979530_SNP [dm6]	C	T	3.627e^-4	0.691	INTRON CG34114
X	17078054	X_17078054_SNP [dm3] X_17184021_SNP [dm6]	C	T	3.628e^-4	0.691	UPSTREAM CR44026 INTRON baz
3R	14084011	3R_14084011_SNP [dm3] 3R_18258289_SNP [dm6]	G	T	3.632e^-4	0.691	DOWNSTREAM moi & 1 other INTERGENIC
3R	3837242	3R_3837242_SNP [dm3] 3R_8011520_SNP [dm6]	G	A	3.636e^-4	0.691	SYNONYMOUS_CODING CG10435 DOWNSTREAM CG3223
3L	10330796	3L_10330796_SNP [dm3] 3L_10337696_SNP [dm6]	C	T	3.638e^-4	0.691	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18138771	2R_18138771_SNP [dm3] 2R_22251266_SNP [dm6]	C	A	3.665e^-4	0.691	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4528517	2R_4528517_SNP [dm3] 2R_8641012_SNP [dm6]	C	T	3.665e^-4	0.691	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8700458	2L_8700458_SNP [dm3] 2L_8700458_SNP [dm6]	G	A	3.668e^-4	0.691	UPSTREAM Hnf4 INTRON Hnf4
2L	5856859	2L_5856859_SNP [dm3] 2L_5856859_SNP [dm6]	T	A	3.668e^-4	0.691	DOWNSTREAM TrissinR INTERGENIC
2L	6106536	2L_6106536_SNP [dm3] 2L_6106536_SNP [dm6]	A	G	3.670e^-4	0.691	INTRON stai
3L	21538772	3L_21538772_SNP [dm3] 3L_21545672_SNP [dm6]	T	A	3.671e^-4	0.691	SYNONYMOUS_CODING Wnk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16424484	2R_16424484_SNP [dm3] 2R_20536979_SNP [dm6]	C	T	3.678e^-4	0.691	SYNONYMOUS_CODING CG13423
X	5323384	X_5323384_SNP [dm3] X_5429351_SNP [dm6]	G	A	3.679e^-4	0.691	UPSTREAM CG15784 DOWNSTREAM CR45517 INTERGENIC
3L	4907962	3L_4907962_SNP [dm3] 3L_4907962_SNP [dm6]	T	A	3.680e^-4	0.691	INTERGENIC
3L	4699381	3L_4699381_SNP [dm3] 3L_4699381_SNP [dm6]	C	A	3.681e^-4	0.691	INTRON RhoGEF64C
3L	4687060	3L_4687060_SNP [dm3] 3L_4687060_SNP [dm6]	A	C	3.687e^-4	0.691	UTR_5_PRIME axo DOWNSTREAM CG7514
3L	811738	3L_811738_SNP [dm3] 3L_811738_SNP [dm6]	A	G	3.688e^-4	0.691	INTERGENIC
3R	8074661	3R_8074661_SNP [dm3] 3R_12248939_SNP [dm6]	T	C	3.693e^-4	0.691	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	8605927	2L_8605927_SNP [dm3] 2L_8605927_SNP [dm6]	A	T	3.693e^-4	0.691	INTRON Sema-1a
3R	22991663	3R_22991663_SNP [dm3] 3R_27165941_SNP [dm6]	C	T	3.696e^-4	0.691	SYNONYMOUS_CODING spn-D UPSTREAM CG34293 DOWNSTREAM ppk31	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	10377064	X_10377064_SNP [dm3] X_10483031_SNP [dm6]	C	G	3.700e^-4	0.691	SYNONYMOUS_CODING CG32687
3R	16395791	3R_16395791_SNP [dm3] 3R_20570069_SNP [dm6]	C	T	3.704e^-4	0.691	INTRON CG5191

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.017e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2268 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	16531253	3L_16531253_SNP [dm3] 3L_16538153_SNP [dm6]	C	T	2.156e^-7	0.404	INTRON CG43373
3L	16531244	3L_16531244_SNP [dm3] 3L_16538144_SNP [dm6]	A	T	1.417e^-6	0.446	INTRON CG43373
X	22277267	X_22277267_SNP [dm3] X_22875431_SNP [dm6]	A	G	1.808e^-6	0.446	DOWNSTREAM CG34334 INTRON CG42346
X	9187695	X_9187695_SNP [dm3] X_9293662_SNP [dm6]	G	A	1.835e^-6	0.446	INTRON lz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19111501	2R_19111501_SNP [dm3] 2R_23223978_SNP [dm6]	G	A	2.174e^-6	0.446	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	6392677	2R_6392677_SNP [dm3] 2R_10505172_SNP [dm6]	T	C	2.238e^-6	0.446	SYNONYMOUS_CODING lola INTRON lola	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25856790	3R_25856790_SNP [dm3] 3R_30031068_SNP [dm6]	T	G	2.253e^-6	0.446	INTRON Axn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23652110	3R_23652110_SNP [dm3] 3R_27826388_SNP [dm6]	A	C	2.461e^-6	0.446	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	23652134	3R_23652134_SNP [dm3] 3R_27826412_SNP [dm6]	G	C	2.461e^-6	0.446	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	8832675	X_8832675_SNP [dm3] X_8938642_SNP [dm6]	T	A	2.532e^-6	0.446	INTRON rdgA
3R	23652019	3R_23652019_SNP [dm3] 3R_27826297_SNP [dm6]	C	T	2.615e^-6	0.446	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22991813	3R_22991813_SNP [dm3] 3R_27166091_SNP [dm6]	G	A	3.927e^-6	0.574	SYNONYMOUS_CODING spn-D UPSTREAM CG34293 DOWNSTREAM ppk31	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	6808873	2R_6808873_SNP [dm3] 2R_10921368_SNP [dm6]	G	C	4.358e^-6	0.574	INTERGENIC
2L	2716071	2L_2716071_SNP [dm3] 2L_2716071_SNP [dm6]	A	G	4.574e^-6	0.574	INTRON CG31690
X	22277232	X_22277232_SNP [dm3] X_22875396_SNP [dm6]	T	A	4.592e^-6	0.574	DOWNSTREAM CG34334 INTRON CG42346
3R	17178090	3R_17178090_DEL [dm3] 3R_21352368_DEL [dm6]	CCATAGCC	TT	6.292e^-6	0.613	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
3R	14297016	3R_14297016_SNP [dm3] 3R_18471294_SNP [dm6]	C	T	6.391e^-6	0.613	INTRON fru
3L	16531305	3L_16531305_SNP [dm3] 3L_16538205_SNP [dm6]	C	T	6.409e^-6	0.613	INTRON CG43373
3R	3973974	3R_3973974_SNP [dm3] 3R_8148252_SNP [dm6]	T	C	6.530e^-6	0.613	UTR_3_PRIME grn
3R	17178087	3R_17178087_SNP [dm3] 3R_21352365_SNP [dm6]	T	C	6.769e^-6	0.613	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
2L	5862481	2L_5862481_SNP [dm3] 2L_5862481_SNP [dm6]	C	T	7.128e^-6	0.613	INTRON rau
3R	23659486	3R_23659486_SNP [dm3] 3R_27833764_SNP [dm6]	A	G	7.417e^-6	0.613	INTRON CG34353
3L	4609225	3L_4609225_SNP [dm3] 3L_4609225_SNP [dm6]	T	C	7.517e^-6	0.613	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	19450120	X_19450120_SNP [dm3] X_19556087_SNP [dm6]	C	T	7.971e^-6	0.62	UPSTREAM mir-2499 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23659487	3R_23659487_INS [dm3] 3R_27833765_INS [dm6]	A	ACTT	8.266e^-6	0.62	INTRON CG34353
3R	23659474	3R_23659474_SNP [dm3] 3R_27833752_SNP [dm6]	C	A	9.133e^-6	0.64	INTRON CG34353
3L	4609124	3L_4609124_SNP [dm3] 3L_4609124_SNP [dm6]	C	T	9.453e^-6	0.64	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	13898697	3R_13898697_SNP [dm3] 3R_18072975_SNP [dm6]	T	C	9.808e^-6	0.64	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
2L	10444724	2L_10444724_SNP [dm3] 2L_10444724_SNP [dm6]	A	C	9.916e^-6	0.64	INTRON loh
3R	14284634	3R_14284634_SNP [dm3] 3R_18458912_SNP [dm6]	A	G	1.045e^-5	0.64	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23659484	3R_23659484_SNP [dm3] 3R_27833762_SNP [dm6]	A	C	1.082e^-5	0.64	INTRON CG34353
3R	23659367	3R_23659367_INS [dm3] 3R_27833645_INS [dm6]	T	TAAGGATGCTAT...	1.094e^-5	0.64	INTRON CG34353
2L	5510193	2L_5510193_SNP [dm3] 2L_5510193_SNP [dm6]	A	C	1.138e^-5	0.64	INTERGENIC
3R	23659544	3R_23659544_SNP [dm3] 3R_27833822_SNP [dm6]	T	C	1.160e^-5	0.64	INTRON CG34353
3R	10292153	3R_10292153_SNP [dm3] 3R_14466431_SNP [dm6]	G	T	1.288e^-5	0.678	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19111486	2R_19111486_SNP [dm3] 2R_23223963_SNP [dm6]	T	C	1.344e^-5	0.678	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	7535277	X_7535277_INS [dm3] X_7641244_INS [dm6]	T	TCT	1.429e^-5	0.678	INTRON ct	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23657095	3R_23657095_SNP [dm3] 3R_27831373_SNP [dm6]	G	T	1.465e^-5	0.678	INTRON CG34353
3L	13908904	3L_13908904_SNP [dm3] 3L_13915804_SNP [dm6]	G	C	1.472e^-5	0.678	INTRON Rgl
3R	26116810	3R_26116810_SNP [dm3] 3R_30291088_SNP [dm6]	T	A	1.480e^-5	0.678	INTRON hdc
2L	2424610	2L_2424610_SNP [dm3] 2L_2424610_SNP [dm6]	C	T	1.510e^-5	0.678	UTR_3_PRIME CG9886 UPSTREAM CG44139
2L	5675914	2L_5675914_SNP [dm3] 2L_5675914_SNP [dm6]	A	C	1.541e^-5	0.678	INTERGENIC
3R	23659481	3R_23659481_SNP [dm3] 3R_27833759_SNP [dm6]	A	C	1.586e^-5	0.678	INTRON CG34353
3R	7337642	3R_7337642_DEL [dm3] 3R_11511920_DEL [dm6]	AA	A	1.651e^-5	0.678	INTERGENIC
3R	14284678	3R_14284678_SNP [dm3] 3R_18458956_SNP [dm6]	C	T	1.703e^-5	0.678	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	17178027	3R_17178027_SNP [dm3] 3R_21352305_SNP [dm6]	T	G	1.749e^-5	0.678	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
3R	17177993	3R_17177993_INS [dm3] 3R_21352271_INS [dm6]	A	AA	1.753e^-5	0.678	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
3L	8949609	3L_8949609_SNP [dm3] 3L_8956509_SNP [dm6]	C	T	1.896e^-5	0.678	UTR_3_PRIME GNBP3 UPSTREAM mRpL12
X	21347740	X_21347740_DEL [dm3] X_21476713_DEL [dm6]	CCGC	C	1.904e^-5	0.678	DOWNSTREAM Ir20a INTERGENIC
3L	1030099	3L_1030099_SNP [dm3] 3L_1030099_SNP [dm6]	T	A	1.929e^-5	0.678	INTRON trio
2L	5889664	2L_5889664_SNP [dm3] 2L_5889664_SNP [dm6]	G	A	2.018e^-5	0.678	INTERGENIC
3L	20621944	3L_20621944_SNP [dm3] 3L_20628844_SNP [dm6]	T	C	2.018e^-5	0.678	UPSTREAM CR44683 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	16882217	X_16882217_SNP [dm3] X_16988184_SNP [dm6]	C	T	2.048e^-5	0.678	INTRON CG45002
3R	13898699	3R_13898699_SNP [dm3] 3R_18072977_SNP [dm6]	T	A	2.053e^-5	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
3R	17177971	3R_17177971_SNP [dm3] 3R_21352249_SNP [dm6]	C	T	2.061e^-5	0.678	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
3L	8949645	3L_8949645_SNP [dm3] 3L_8956545_SNP [dm6]	A	T	2.085e^-5	0.678	UTR_3_PRIME GNBP3 UPSTREAM mRpL12
2R	18323437	2R_18323437_SNP [dm3] 2R_22435932_SNP [dm6]	C	A	2.118e^-5	0.678	INTERGENIC
3R	9171608	3R_9171608_SNP [dm3] 3R_13345886_SNP [dm6]	T	C	2.131e^-5	0.678	DOWNSTREAM PK2-R1 INTERGENIC
X	12688677	X_12688677_SNP [dm3] X_12794644_SNP [dm6]	A	G	2.152e^-5	0.678	INTRON Pde9
3R	17178023	3R_17178023_SNP [dm3] 3R_21352301_SNP [dm6]	G	C	2.188e^-5	0.678	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
3R	11576004	3R_11576004_SNP [dm3] 3R_15750282_SNP [dm6]	T	G	2.204e^-5	0.678	INTERGENIC
2R	10171811	2R_10171811_SNP [dm3] 2R_14284306_SNP [dm6]	T	A	2.326e^-5	0.699	INTRON Ih	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14595876	3L_14595876_SNP [dm3] 3L_14602776_SNP [dm6]	C	T	2.347e^-5	0.699	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	4609211	3L_4609211_SNP [dm3] 3L_4609211_SNP [dm6]	T	C	2.384e^-5	0.699	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	9257075	3L_9257075_SNP [dm3] 3L_9263975_SNP [dm6]	A	G	2.444e^-5	0.702	INTRON GluRIB
2L	4329695	2L_4329695_SNP [dm3] 2L_4329695_SNP [dm6]	C	T	2.482e^-5	0.702	SYNONYMOUS_CODING CG16857	TF binding site mE1_TFBS_chinmo
3R	8009146	3R_8009146_SNP [dm3] 3R_12183424_SNP [dm6]	A	C	2.509e^-5	0.702	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8949621	3L_8949621_SNP [dm3] 3L_8956521_SNP [dm6]	A	T	2.610e^-5	0.72	UTR_3_PRIME GNBP3 UPSTREAM mRpL12
3R	17178058	3R_17178058_SNP [dm3] 3R_21352336_SNP [dm6]	A	G	2.654e^-5	0.721	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
2L	12688160	2L_12688160_SNP [dm3] 2L_12688160_SNP [dm6]	C	T	2.778e^-5	0.744	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	19220699	3L_19220699_SNP [dm3] 3L_19227599_SNP [dm6]	C	T	2.901e^-5	0.753	INTRON fz2
2R	12270239	2R_12270239_DEL [dm3] 2R_16382734_DEL [dm6]	AAG	A	2.948e^-5	0.753	UTR_3_PRIME CG43187 DOWNSTREAM CG43187
3R	1960715	3R_1960715_SNP [dm3] 3R_6134993_SNP [dm6]	C	A	2.954e^-5	0.753	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18149587	2R_18149587_SNP [dm3] 2R_22262082_SNP [dm6]	G	A	2.970e^-5	0.753	INTRON dve
3L	9593901	3L_9593901_SNP [dm3] 3L_9600801_SNP [dm6]	A	G	3.069e^-5	0.768	NON_SYNONYMOUS_CODING CG3088 UPSTREAM CG3306 DOWNSTREAM CG3222
3R	17177965	3R_17177965_SNP [dm3] 3R_21352243_SNP [dm6]	T	A	3.165e^-5	0.778	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
3L	901287	3L_901287_SNP [dm3] 3L_901287_SNP [dm6]	C	A	3.194e^-5	0.778	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	23657606	3R_23657606_SNP [dm3] 3R_27831884_SNP [dm6]	G	A	3.237e^-5	0.778	INTRON CG34353
3R	23659490	3R_23659490_SNP [dm3] 3R_27833768_SNP [dm6]	A	T	3.309e^-5	0.785	INTRON CG34353
3R	20163317	3R_20163317_SNP [dm3] 3R_24337595_SNP [dm6]	G	C	3.396e^-5	0.785	DOWNSTREAM Dis3 INTRON CG6432	TF binding site mE1_TFBS_cad
3R	17178047	3R_17178047_SNP [dm3] 3R_21352325_SNP [dm6]	C	T	3.404e^-5	0.785	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
X	16782050	X_16782050_SNP [dm3] X_16888017_SNP [dm6]	C	A	3.434e^-5	0.785	NON_SYNONYMOUS_CODING CG4880 DOWNSTREAM CR43768
2L	5891313	2L_5891313_SNP [dm3] 2L_5891313_SNP [dm6]	A	T	3.474e^-5	0.785	DOWNSTREAM Acp26Ab INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	19325192	2R_19325192_SNP [dm3] 2R_23437669_SNP [dm6]	A	G	3.587e^-5	0.793	INTERGENIC
2R	16240641	2R_16240641_SNP [dm3] 2R_20353136_SNP [dm6]	C	A	3.608e^-5	0.793	DOWNSTREAM CG11192 INTERGENIC
3R	23842035	3R_23842035_SNP [dm3] 3R_28016313_SNP [dm6]	T	C	3.776e^-5	0.793	INTERGENIC
3R	8039164	3R_8039164_SNP [dm3] 3R_12213442_SNP [dm6]	T	C	3.793e^-5	0.793	DOWNSTREAM CG4848 INTERGENIC
3R	23842037	3R_23842037_DEL [dm3] 3R_28016315_DEL [dm6]	TG	T	3.844e^-5	0.793	INTERGENIC
3L	20618685	3L_20618685_DEL [dm3] 3L_20625585_DEL [dm6]	ATTGCTCCACAA...	A	3.893e^-5	0.793	DOWNSTREAM CR44683 INTERGENIC
2R	14716259	2R_14716259_SNP [dm3] 2R_18828754_SNP [dm6]	A	T	3.928e^-5	0.793	INTRON CG15097
2R	6442232	2R_6442232_SNP [dm3] 2R_10554727_SNP [dm6]	T	C	3.946e^-5	0.793	INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3R	8009153	3R_8009153_SNP [dm3] 3R_12183431_SNP [dm6]	C	A	3.983e^-5	0.793	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12270752	2R_12270752_SNP [dm3] 2R_16383247_SNP [dm6]	T	C	4.007e^-5	0.793	UTR_3_PRIME CG43187	transposable element FlyBase
2L	16713895	2L_16713895_INS [dm3] 2L_16713895_INS [dm6]	A	AAA	4.015e^-5	0.793	INTRON CG31808
2R	12153364	2R_12153364_SNP [dm3] 2R_16265859_SNP [dm6]	G	A	4.083e^-5	0.793	SPLICE_SITE_REGION csul INTRON csul
3L	16539804	3L_16539804_SNP [dm3] 3L_16546704_SNP [dm6]	A	T	4.088e^-5	0.793	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	18879273	3L_18879273_SNP [dm3] 3L_18886173_SNP [dm6]	T	C	4.145e^-5	0.793	INTRON CG3961
2L	5665968	2L_5665968_SNP [dm3] 2L_5665968_SNP [dm6]	G	A	4.186e^-5	0.793	INTRON Hsp60C
3R	10135587	3R_10135587_SNP [dm3] 3R_14309865_SNP [dm6]	C	A	4.187e^-5	0.793	UTR_3_PRIME RpII15 UPSTREAM CG31321 DOWNSTREAM RpII15
2R	6392641	2R_6392641_SNP [dm3] 2R_10505136_SNP [dm6]	T	A	4.262e^-5	0.795	SYNONYMOUS_CODING lola INTRON lola	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4876356	2R_4876356_SNP [dm3] 2R_8988851_SNP [dm6]	C	T	4.280e^-5	0.795	INTERGENIC
3R	23659421	3R_23659421_SNP [dm3] 3R_27833699_SNP [dm6]	G	A	4.392e^-5	0.795	INTRON CG34353
3L	9263055	3L_9263055_DEL [dm3] 3L_9269955_DEL [dm6]	AT	G	4.399e^-5	0.795	INTRON GluRIB
3L	5281405	3L_5281405_SNP [dm3] 3L_5288305_SNP [dm6]	A	T	4.411e^-5	0.795	INTERGENIC	TF binding site mE1_TFBS_inv
3L	9396473	3L_9396473_SNP [dm3] 3L_9403373_SNP [dm6]	C	A	4.597e^-5	0.813	UPSTREAM eIF-4E INTERGENIC
3R	23652245	3R_23652245_SNP [dm3] 3R_27826523_SNP [dm6]	T	A	4.620e^-5	0.813	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	17177914	3R_17177914_SNP [dm3] 3R_21352192_SNP [dm6]	T	A	4.750e^-5	0.813	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
3R	24806077	3R_24806077_SNP [dm3] 3R_28980355_SNP [dm6]	C	T	4.789e^-5	0.813	INTERGENIC
X	7487224	X_7487224_SNP [dm3] X_7593191_SNP [dm6]	T	C	4.807e^-5	0.813	INTERGENIC	regulatory region REDfly_CRMs
X	12688674	X_12688674_SNP [dm3] X_12794641_SNP [dm6]	T	A	4.841e^-5	0.813	INTRON Pde9
3L	3769186	3L_3769186_SNP [dm3] 3L_3769186_SNP [dm6]	A	T	4.851e^-5	0.813	INTRON CG32264
X	12688675	X_12688675_SNP [dm3] X_12794642_SNP [dm6]	C	T	4.914e^-5	0.813	INTRON Pde9
2R	17102753	2R_17102753_SNP [dm3] 2R_21215248_SNP [dm6]	G	T	4.939e^-5	0.813	UPSTREAM CG4302 DOWNSTREAM CG15661 INTERGENIC
3R	13821597	3R_13821597_SNP [dm3] 3R_17995875_SNP [dm6]	G	T	4.940e^-5	0.813	INTRON cpo
2R	12501789	2R_12501789_SNP [dm3] 2R_16614284_SNP [dm6]	A	T	5.026e^-5	0.82	INTRON CG5065
3R	22985601	3R_22985601_SNP [dm3] 3R_27159879_SNP [dm6]	C	G	5.146e^-5	0.821	DOWNSTREAM grass INTERGENIC
3R	20146020	3R_20146020_DEL [dm3] 3R_24320298_DEL [dm6]	TT	T	5.164e^-5	0.821	INTRON BRWD3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20665625	2L_20665625_SNP [dm3] 2L_20665625_SNP [dm6]	A	T	5.216e^-5	0.821	UPSTREAM CG31678 INTRON CG31678 EXON CR45004
3R	14297041	3R_14297041_SNP [dm3] 3R_18471319_SNP [dm6]	A	G	5.300e^-5	0.821	INTRON fru
3R	4121647	3R_4121647_SNP [dm3] 3R_8295925_SNP [dm6]	G	C	5.303e^-5	0.821	SYNONYMOUS_CODING CG9626	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	9210640	X_9210640_SNP [dm3] X_9316607_SNP [dm6]	G	A	5.381e^-5	0.821	INTERGENIC
3L	2326786	3L_2326786_SNP [dm3] 3L_2326786_SNP [dm6]	G	C	5.502e^-5	0.821	INTRON MsR1
3L	9257319	3L_9257319_SNP [dm3] 3L_9264219_SNP [dm6]	A	G	5.540e^-5	0.821	INTRON GluRIB
X	4441784	X_4441784_SNP [dm3] X_4547751_SNP [dm6]	A	T	5.559e^-5	0.821	SYNONYMOUS_CODING Usf INTRON CR32773
3L	20573939	3L_20573939_SNP [dm3] 3L_20580839_SNP [dm6]	T	G	5.632e^-5	0.821	INTERGENIC
2L	3553785	2L_3553785_SNP [dm3] 2L_3553785_SNP [dm6]	T	A	5.650e^-5	0.821	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3553787	2L_3553787_SNP [dm3] 2L_3553787_SNP [dm6]	T	C	5.689e^-5	0.821	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21798902	2L_21798902_SNP [dm3] 2L_21798902_SNP [dm6]	A	G	5.739e^-5	0.821	EXON CR44269
2R	4839406	2R_4839406_SNP [dm3] 2R_8951901_SNP [dm6]	T	C	5.753e^-5	0.821	UPSTREAM CG33199 & 2 others INTRON Tom7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	12580439	3L_12580439_SNP [dm3] 3L_12587339_SNP [dm6]	A	T	5.765e^-5	0.821	INTRON ara
2L	2424603	2L_2424603_SNP [dm3] 2L_2424603_SNP [dm6]	G	A	5.767e^-5	0.821	UTR_3_PRIME CG9886 UPSTREAM CG44139
X	2902039	X_2902039_SNP [dm3] X_3008006_SNP [dm6]	C	A	5.786e^-5	0.821	INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	19385140	2R_19385140_SNP [dm3] 2R_23497617_SNP [dm6]	A	C	5.841e^-5	0.821	INTERGENIC
3L	18115834	3L_18115834_SNP [dm3] 3L_18122734_SNP [dm6]	C	T	5.993e^-5	0.821	UPSTREAM CG42853 INTERGENIC
2L	11046490	2L_11046490_DEL [dm3] 2L_11046490_DEL [dm6]	AGCATATA	A	6.248e^-5	0.821	INTRON Samuel
3L	10436972	3L_10436972_SNP [dm3] 3L_10443872_SNP [dm6]	C	A	6.390e^-5	0.821	INTERGENIC
3R	16018328	3R_16018328_SNP [dm3] 3R_20192606_SNP [dm6]	A	C	6.421e^-5	0.821	INTERGENIC
2L	2424473	2L_2424473_SNP [dm3] 2L_2424473_SNP [dm6]	C	T	6.464e^-5	0.821	UTR_3_PRIME CG9886 UPSTREAM CG44139
2R	9014291	2R_9014291_SNP [dm3] 2R_13126786_SNP [dm6]	T	G	6.473e^-5	0.821	DOWNSTREAM CG13325 INTERGENIC
3R	17177907	3R_17177907_DEL [dm3] 3R_21352185_DEL [dm6]	TTTCT	AA	6.511e^-5	0.821	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
3L	13146206	3L_13146206_SNP [dm3] 3L_13153106_SNP [dm6]	G	A	6.518e^-5	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	20861179	2L_20861179_SNP [dm3] 2L_20861179_SNP [dm6]	T	C	6.604e^-5	0.821	DOWNSTREAM CG9336 INTERGENIC	TF binding site mE1_TFBS_inv
3L	15396537	3L_15396537_SNP [dm3] 3L_15403437_SNP [dm6]	G	T	6.669e^-5	0.821	INTERGENIC
3L	16539747	3L_16539747_SNP [dm3] 3L_16546647_SNP [dm6]	A	T	6.751e^-5	0.821	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	16539734	3L_16539734_DEL [dm3] 3L_16546634_DEL [dm6]	GTTAATAA	G	6.821e^-5	0.821	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	5891558	2L_5891558_SNP [dm3] 2L_5891558_SNP [dm6]	T	A	6.862e^-5	0.821	DOWNSTREAM Acp26Ab INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	5856685	2L_5856685_SNP [dm3] 2L_5856685_SNP [dm6]	T	A	6.863e^-5	0.821	UTR_3_PRIME TrissinR
3L	16090739	3L_16090739_SNP [dm3] 3L_16097639_SNP [dm6]	C	A	6.963e^-5	0.821	UPSTREAM ms_3_72Dt & 1 other INTERGENIC
3R	11595985	3R_11595985_SNP [dm3] 3R_15770263_SNP [dm6]	C	A	6.986e^-5	0.821	INTERGENIC
2R	15940870	2R_15940870_DEL [dm3] 2R_20053365_DEL [dm6]	ATTAGT	A	6.994e^-5	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2L	5891088	2L_5891088_SNP [dm3] 2L_5891088_SNP [dm6]	C	T	7.006e^-5	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	3770294	3L_3770294_SNP [dm3] 3L_3770294_SNP [dm6]	C	T	7.014e^-5	0.821	INTRON CG32264
3L	10436971	3L_10436971_SNP [dm3] 3L_10443871_SNP [dm6]	A	G	7.052e^-5	0.821	INTERGENIC
2L	5676188	2L_5676188_SNP [dm3] 2L_5676188_SNP [dm6]	C	T	7.156e^-5	0.821	INTERGENIC
2R	15315003	2R_15315003_SNP [dm3] 2R_19427498_SNP [dm6]	T	C	7.197e^-5	0.821	SYNONYMOUS_CODING CalpA
3R	25069899	3R_25069899_SNP [dm3] 3R_29244177_SNP [dm6]	A	T	7.200e^-5	0.821	DOWNSTREAM SP1029 INTRON CG31445
2R	12680261	2R_12680261_SNP [dm3] 2R_16792756_SNP [dm6]	G	T	7.282e^-5	0.821	NON_SYNONYMOUS_CODING CG15919 DOWNSTREAM CG15615 & 1 other
3R	16018246	3R_16018246_INS [dm3] 3R_20192524_INS [dm6]	T	AC	7.297e^-5	0.821	INTERGENIC
3L	3407247	3L_3407247_SNP [dm3] 3L_3407247_SNP [dm6]	A	G	7.309e^-5	0.821	INTRON sty
2L	5891631	2L_5891631_SNP [dm3] 2L_5891631_SNP [dm6]	C	T	7.392e^-5	0.821	DOWNSTREAM Acp26Ab INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	13143007	2R_13143007_SNP [dm3] 2R_17255502_SNP [dm6]	G	A	7.489e^-5	0.821	SYNONYMOUS_CODING CG43272 UPSTREAM CR43660 INTRON mbl
3R	25879174	3R_25879174_SNP [dm3] 3R_30053452_SNP [dm6]	G	C	7.523e^-5	0.821	SYNONYMOUS_CODING CG7946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	17663872	3R_17663872_SNP [dm3] 3R_21838150_SNP [dm6]	A	C	7.563e^-5	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18295899	2R_18295899_SNP [dm3] 2R_22408394_SNP [dm6]	G	C	7.627e^-5	0.821	UTR_3_PRIME CG6044 UPSTREAM ventrally-expressed-protein-D DOWNSTREAM qkr58E-3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	23660390	3R_23660390_SNP [dm3] 3R_27834668_SNP [dm6]	A	T	7.787e^-5	0.821	INTRON CG34353
X	21352537	X_21352537_SNP [dm3] X_21481510_SNP [dm6]	T	C	7.837e^-5	0.821	UPSTREAM CR45510 INTERGENIC
2L	3963572	2L_3963572_SNP [dm3] 2L_3963572_SNP [dm6]	T	C	7.935e^-5	0.821	INTRON fred	TF binding site mE1_TFBS_bab1
2L	12688312	2L_12688312_SNP [dm3] 2L_12688312_SNP [dm6]	G	C	7.947e^-5	0.821	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5202140	3L_5202140_SNP [dm3] 3L_5209040_SNP [dm6]	C	A	7.951e^-5	0.821	INTRON shep
3R	14394837	3R_14394837_SNP [dm3] 3R_18569115_SNP [dm6]	A	T	8.014e^-5	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8508308	2L_8508308_INS [dm3] 2L_8508308_INS [dm6]	A	AGA	8.014e^-5	0.821	DOWNSTREAM CG13096 INTERGENIC
2R	6449511	2R_6449511_SNP [dm3] 2R_10562006_SNP [dm6]	C	T	8.037e^-5	0.821	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2424590	2L_2424590_SNP [dm3] 2L_2424590_SNP [dm6]	G	A	8.148e^-5	0.821	UTR_3_PRIME CG9886 UPSTREAM CG44139
X	10311528	X_10311528_SNP [dm3] X_10417495_SNP [dm6]	G	A	8.177e^-5	0.821	UTR_5_PRIME RabX2 INTRON CG32683
2L	19677488	2L_19677488_SNP [dm3] 2L_19677488_SNP [dm6]	T	C	8.248e^-5	0.821	INTRON Lar	TF binding site mE1_TFBS_inv
2L	5674862	2L_5674862_SNP [dm3] 2L_5674862_SNP [dm6]	G	T	8.250e^-5	0.821	INTERGENIC
2L	4105226	2L_4105226_SNP [dm3] 2L_4105226_SNP [dm6]	C	T	8.261e^-5	0.821	INTRON ed
2R	6099236	2R_6099236_SNP [dm3] 2R_10211731_SNP [dm6]	A	G	8.323e^-5	0.821	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	4344298	2L_4344298_SNP [dm3] 2L_4344298_SNP [dm6]	A	C	8.419e^-5	0.821	SYNONYMOUS_CODING Atet DOWNSTREAM mir-1005
3L	14086012	3L_14086012_SNP [dm3] 3L_14092912_SNP [dm6]	T	C	8.455e^-5	0.821	INTERGENIC
2L	6715619	2L_6715619_SNP [dm3] 2L_6715619_SNP [dm6]	G	A	8.468e^-5	0.821	INTRON AkhR	TF binding site BDTNP1_TFBS_dl
3L	10680073	3L_10680073_SNP [dm3] 3L_10686973_SNP [dm6]	T	G	8.472e^-5	0.821	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8389470	3L_8389470_SNP [dm3] 3L_8396370_SNP [dm6]	A	G	8.486e^-5	0.821	INTRON CG7120	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7489420	2L_7489420_SNP [dm3] 2L_7489420_SNP [dm6]	G	C	8.551e^-5	0.821	INTRON Ziz
3L	2660874	3L_2660874_SNP [dm3] 3L_2660874_SNP [dm6]	T	C	8.607e^-5	0.821	SYNONYMOUS_CODING CG33233 UPSTREAM CG33234 DOWNSTREAM CG33233 INTRON Fife
X	2626954	X_2626954_SNP [dm3] X_2732921_SNP [dm6]	T	C	8.781e^-5	0.821	SYNONYMOUS_CODING CG2712 UPSTREAM ttm50	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	6918376	2R_6918376_SNP [dm3] 2R_11030871_SNP [dm6]	T	C	8.794e^-5	0.821	INTRON luna
3R	16018370	3R_16018370_SNP [dm3] 3R_20192648_SNP [dm6]	T	A	8.800e^-5	0.821	INTERGENIC
3R	10201032	3R_10201032_SNP [dm3] 3R_14375310_SNP [dm6]	A	T	8.850e^-5	0.821	DOWNSTREAM CR44943 INTERGENIC
2L	5666521	2L_5666521_SNP [dm3] 2L_5666521_SNP [dm6]	T	A	8.925e^-5	0.821	INTRON Hsp60C
3L	9009925	3L_9009925_SNP [dm3] 3L_9016825_SNP [dm6]	G	A	8.937e^-5	0.821	INTRON Doc2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14086064	3L_14086064_SNP [dm3] 3L_14092964_SNP [dm6]	G	A	8.982e^-5	0.821	INTERGENIC
3R	18524225	3R_18524225_SNP [dm3] 3R_22698503_SNP [dm6]	C	T	9.032e^-5	0.821	SYNONYMOUS_CODING Cyp6d4 DOWNSTREAM cd	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	13862381	2L_13862381_SNP [dm3] 2L_13862381_SNP [dm6]	G	A	9.061e^-5	0.821	INTRON CenG1A	TF binding site BDTNP1_TFBS_da mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
2L	5891130	2L_5891130_SNP [dm3] 2L_5891130_SNP [dm6]	C	T	9.070e^-5	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	3575102	2L_3575102_SNP [dm3] 2L_3575102_SNP [dm6]	C	A	9.073e^-5	0.821	UPSTREAM CR43822 INTERGENIC
3L	9257788	3L_9257788_SNP [dm3] 3L_9264688_SNP [dm6]	C	T	9.088e^-5	0.821	INTRON GluRIB
3L	10474222	3L_10474222_SNP [dm3] 3L_10481122_SNP [dm6]	T	G	9.096e^-5	0.821	UPSTREAM A2bp1 INTERGENIC
2L	5671492	2L_5671492_SNP [dm3] 2L_5671492_SNP [dm6]	C	T	9.107e^-5	0.821	DOWNSTREAM Hsp60C INTERGENIC
X	15269377	X_15269377_SNP [dm3] X_15375344_SNP [dm6]	A	G	9.112e^-5	0.821	INTRON acj6
3L	815331	3L_815331_SNP [dm3] 3L_815331_SNP [dm6]	A	G	9.138e^-5	0.821	DOWNSTREAM CR44537 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17748611	2L_17748611_DEL [dm3] 2L_17748611_DEL [dm6]	CC	C	9.219e^-5	0.821	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18149584	2R_18149584_SNP [dm3] 2R_22262079_SNP [dm6]	G	T	9.302e^-5	0.821	INTRON dve
3R	14284643	3R_14284643_INS [dm3] 3R_18458921_INS [dm6]	T	TACT	9.302e^-5	0.821	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25298807	3R_25298807_SNP [dm3] 3R_29473085_SNP [dm6]	A	T	9.344e^-5	0.821	INTRON Ptp99A
2L	5891984	2L_5891984_SNP [dm3] 2L_5891984_SNP [dm6]	G	A	9.348e^-5	0.821	DOWNSTREAM Acp26Ab & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	18227271	2R_18227271_SNP [dm3] 2R_22339766_SNP [dm6]	C	T	9.382e^-5	0.821	SYNONYMOUS_CODING Liprin-gamma	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14975304	2R_14975304_DEL [dm3] 2R_19087799_DEL [dm6]	TT	T	9.403e^-5	0.821	INTRON 5-HT1A
2R	9687016	2R_9687016_SNP [dm3] 2R_13799511_SNP [dm6]	C	T	9.483e^-5	0.821	INTRON Cpr50Cb
3R	23656411	3R_23656411_SNP [dm3] 3R_27830689_SNP [dm6]	T	C	9.485e^-5	0.821	INTRON CG34353
2L	12357273	2L_12357273_SNP [dm3] 2L_12357273_SNP [dm6]	C	G	9.489e^-5	0.821	SYNONYMOUS_CODING CG17010 INTRON bru-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6914049	2R_6914049_SNP [dm3] 2R_11026544_SNP [dm6]	T	G	9.566e^-5	0.821	INTRON luna
3L	4516517	3L_4516517_SNP [dm3] 3L_4516517_SNP [dm6]	G	A	9.643e^-5	0.821	INTRON Tie	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	8184084	X_8184084_SNP [dm3] X_8290051_SNP [dm6]	C	T	9.709e^-5	0.821	INTRON nAChRalpha3
X	4202075	X_4202075_SNP [dm3] X_4308042_SNP [dm6]	T	A	9.741e^-5	0.821	INTERGENIC
2L	5669968	2L_5669968_SNP [dm3] 2L_5669968_SNP [dm6]	C	T	9.795e^-5	0.821	SYNONYMOUS_CODING Hsp60C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12854431	2R_12854431_SNP [dm3] 2R_16966926_SNP [dm6]	C	A	9.811e^-5	0.821	INTERGENIC
2L	5662718	2L_5662718_SNP [dm3] 2L_5662718_SNP [dm6]	T	A	1.003e^-4	0.821	UPSTREAM Hsp60C & 1 other INTERGENIC
3L	9257335	3L_9257335_SNP [dm3] 3L_9264235_SNP [dm6]	T	C	1.004e^-4	0.821	INTRON GluRIB
3L	1069442	3L_1069442_SNP [dm3] 3L_1069442_SNP [dm6]	G	A	1.008e^-4	0.821	INTRON bab1
3L	3769439	3L_3769439_INS [dm3] 3L_3769439_INS [dm6]	A	AG	1.009e^-4	0.821	INTRON CG32264
2R	15940886	2R_15940886_SNP [dm3] 2R_20053381_SNP [dm6]	T	C	1.011e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2R	5009410	2R_5009410_SNP [dm3] 2R_9121905_SNP [dm6]	G	T	1.013e^-4	0.821	UTR_3_PRIME Su_var_2-10 UPSTREAM GstE13 DOWNSTREAM Su_var_2-10
3L	19287227	3L_19287227_SNP [dm3] 3L_19294127_SNP [dm6]	T	A	1.016e^-4	0.821	UPSTREAM fal INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 transposable element FlyBase
3R	8012845	3R_8012845_SNP [dm3] 3R_12187123_SNP [dm6]	C	A	1.019e^-4	0.821	INTERGENIC
2R	12153362	2R_12153362_SNP [dm3] 2R_16265857_SNP [dm6]	T	A	1.026e^-4	0.821	SPLICE_SITE_REGION csul INTRON csul
3R	8226419	3R_8226419_SNP [dm3] 3R_12400697_SNP [dm6]	G	A	1.032e^-4	0.821	SYNONYMOUS_CODING lig3 INTRON CG34402
3L	5753139	3L_5753139_SNP [dm3] 3L_5760039_SNP [dm6]	C	T	1.035e^-4	0.821	SYNONYMOUS_CODING Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13641789	3R_13641789_SNP [dm3] 3R_17816067_SNP [dm6]	A	G	1.036e^-4	0.821	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9822352	3R_9822352_SNP [dm3] 3R_13996630_SNP [dm6]	T	G	1.048e^-4	0.821	INTRON rdx
2R	4673755	2R_4673755_SNP [dm3] 2R_8786250_SNP [dm6]	C	G	1.049e^-4	0.821	INTERGENIC
3R	17240103	3R_17240103_SNP [dm3] 3R_21414381_SNP [dm6]	C	T	1.051e^-4	0.821	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16670184	2R_16670184_SNP [dm3] 2R_20782679_SNP [dm6]	A	T	1.052e^-4	0.821	INTERGENIC
2L	19900290	2L_19900290_SNP [dm3] 2L_19900290_SNP [dm6]	T	G	1.055e^-4	0.821	INTRON sick
2R	6099307	2R_6099307_SNP [dm3] 2R_10211802_SNP [dm6]	G	A	1.060e^-4	0.821	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	670554	2R_670554_SNP [dm3] 2R_4783049_SNP [dm6]	A	G	1.061e^-4	0.821	EXON CR43281
3R	10051784	3R_10051784_SNP [dm3] 3R_14226062_SNP [dm6]	T	C	1.071e^-4	0.821	NON_SYNONYMOUS_CODING CG9631	TF binding site mE1_TFBS_cad
3R	10919177	3R_10919177_SNP [dm3] 3R_15093455_SNP [dm6]	G	A	1.073e^-4	0.821	INTRON CG6966	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	11046453	2L_11046453_SNP [dm3] 2L_11046453_SNP [dm6]	G	T	1.074e^-4	0.821	INTRON Samuel
3L	3926060	3L_3926060_DEL [dm3] 3L_3926060_DEL [dm6]	ATAATGACTATCCAAACACT...	A	1.075e^-4	0.821	UPSTREAM Eip63F-1 INTRON Eip63F-1
3R	26951317	3R_26951317_DEL [dm3] 3R_31125595_DEL [dm6]	TTAAAAAT	GG	1.080e^-4	0.821	UPSTREAM CG15554 INTERGENIC
3R	5116856	3R_5116856_SNP [dm3] 3R_9291134_SNP [dm6]	T	C	1.089e^-4	0.821	INTERGENIC
X	10283526	X_10283526_SNP [dm3] X_10389493_SNP [dm6]	G	A	1.102e^-4	0.821	INTRON flw
3L	13082467	3L_13082467_SNP [dm3] 3L_13089367_SNP [dm6]	C	T	1.108e^-4	0.821	SYNONYMOUS_CODING CG11251 DOWNSTREAM CR45749	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13142230	2R_13142230_SNP [dm3] 2R_17254725_SNP [dm6]	A	C	1.108e^-4	0.821	UPSTREAM CG43272 INTRON mbl & 1 other
3R	7998700	3R_7998700_SNP [dm3] 3R_12172978_SNP [dm6]	T	A	1.112e^-4	0.821	INTERGENIC
3L	13855598	3L_13855598_SNP [dm3] 3L_13862498_SNP [dm6]	A	C	1.129e^-4	0.821	INTRON CG8745	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	812495	3L_812495_SNP [dm3] 3L_812495_SNP [dm6]	G	T	1.130e^-4	0.821	UPSTREAM CR44537 INTERGENIC
2R	9014290	2R_9014290_SNP [dm3] 2R_13126785_SNP [dm6]	A	G	1.141e^-4	0.821	DOWNSTREAM CG13325 INTERGENIC
3L	21475196	3L_21475196_SNP [dm3] 3L_21482096_SNP [dm6]	T	C	1.145e^-4	0.821	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13626819	3R_13626819_SNP [dm3] 3R_17801097_SNP [dm6]	G	T	1.146e^-4	0.821	DOWNSTREAM CG17806 INTRON CG17803
3R	4140180	3R_4140180_SNP [dm3] 3R_8314458_SNP [dm6]	G	A	1.153e^-4	0.821	SYNONYMOUS_CODING eIF4AIII DOWNSTREAM Coq2
3R	22989822	3R_22989822_SNP [dm3] 3R_27164100_SNP [dm6]	G	A	1.155e^-4	0.821	SYNONYMOUS_CODING ppk31 DOWNSTREAM CG34293
2R	11738107	2R_11738107_SNP [dm3] 2R_15850602_SNP [dm6]	T	G	1.158e^-4	0.821	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
3L	8954582	3L_8954582_SNP [dm3] 3L_8961482_SNP [dm6]	A	T	1.163e^-4	0.821	DOWNSTREAM CG13313 INTRON CG5660
3L	2134632	3L_2134632_SNP [dm3] 3L_2134632_SNP [dm6]	A	G	1.166e^-4	0.821	SYNONYMOUS_CODING zormin	TF binding site mE1_TFBS_chinmo
3L	7587572	3L_7587572_SNP [dm3] 3L_7594472_SNP [dm6]	C	T	1.166e^-4	0.821	INTRON CG33275
3R	17450965	3R_17450965_SNP [dm3] 3R_21625243_SNP [dm6]	C	T	1.166e^-4	0.821	SYNONYMOUS_CODING E2f	TF binding site mE1_TFBS_cad
3L	7896461	3L_7896461_SNP [dm3] 3L_7903361_SNP [dm6]	C	G	1.167e^-4	0.821	UTR_5_PRIME pbl INTRON pbl
2R	14682603	2R_14682603_SNP [dm3] 2R_18795098_SNP [dm6]	G	A	1.169e^-4	0.821	SYNONYMOUS_CODING MFS15 DOWNSTREAM CG15080
3L	19081852	3L_19081852_SNP [dm3] 3L_19088752_SNP [dm6]	C	G	1.182e^-4	0.821	INTERGENIC
2L	5891881	2L_5891881_SNP [dm3] 2L_5891881_SNP [dm6]	G	A	1.184e^-4	0.821	DOWNSTREAM Acp26Ab INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	8501581	X_8501581_SNP [dm3] X_8607548_SNP [dm6]	A	T	1.185e^-4	0.821	INTERGENIC
2L	3553779	2L_3553779_SNP [dm3] 2L_3553779_SNP [dm6]	A	G	1.185e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6126930	3L_6126930_SNP [dm3] 3L_6133830_SNP [dm6]	A	G	1.186e^-4	0.821	UPSTREAM Lcp65Ag2 DOWNSTREAM Lcp65Ag1 INTERGENIC
2L	1628894	2L_1628894_SNP [dm3] 2L_1628894_SNP [dm6]	C	G	1.191e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5858895	2L_5858895_SNP [dm3] 2L_5858895_SNP [dm6]	A	G	1.194e^-4	0.821	DOWNSTREAM rau INTERGENIC
2L	2462416	2L_2462416_SNP [dm3] 2L_2462416_SNP [dm6]	T	C	1.197e^-4	0.821	UPSTREAM tRNA:Y1:22Fa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20343282	3R_20343282_SNP [dm3] 3R_24517560_SNP [dm6]	G	A	1.199e^-4	0.821	UPSTREAM Pp1alpha-96A INTRON CG13617	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	23656824	3R_23656824_SNP [dm3] 3R_27831102_SNP [dm6]	A	C	1.203e^-4	0.821	INTRON CG34353
3R	23659592	3R_23659592_SNP [dm3] 3R_27833870_SNP [dm6]	G	C	1.208e^-4	0.821	INTRON CG34353
3R	8232610	3R_8232610_SNP [dm3] 3R_12406888_SNP [dm6]	C	G	1.228e^-4	0.821	SYNONYMOUS_CODING CG5167 UPSTREAM Cyp9f2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	20575036	3L_20575036_SNP [dm3] 3L_20581936_SNP [dm6]	G	A	1.229e^-4	0.821	INTERGENIC
3L	20587062	3L_20587062_SNP [dm3] 3L_20593962_SNP [dm6]	T	C	1.236e^-4	0.821	INTERGENIC
2L	3553776	2L_3553776_SNP [dm3] 2L_3553776_SNP [dm6]	T	A	1.237e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3699882	2L_3699882_SNP [dm3] 2L_3699882_SNP [dm6]	A	T	1.241e^-4	0.821	UPSTREAM CG10031 & 2 others DOWNSTREAM CG42464 INTERGENIC
2R	6449507	2R_6449507_SNP [dm3] 2R_10562002_SNP [dm6]	C	T	1.241e^-4	0.821	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1736393	3L_1736393_SNP [dm3] 3L_1736393_SNP [dm6]	C	T	1.242e^-4	0.821	SYNONYMOUS_CODING CG18173 UPSTREAM Oseg4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13641791	3R_13641791_SNP [dm3] 3R_17816069_SNP [dm6]	C	T	1.242e^-4	0.821	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10138864	3R_10138864_SNP [dm3] 3R_14313142_SNP [dm6]	C	T	1.245e^-4	0.821	INTRON CG31321
2L	8731507	2L_8731507_SNP [dm3] 2L_8731507_SNP [dm6]	T	C	1.248e^-4	0.821	INTRON raw
3R	26116531	3R_26116531_SNP [dm3] 3R_30290809_SNP [dm6]	A	G	1.255e^-4	0.821	INTRON hdc
X	10431608	X_10431608_SNP [dm3] X_10537575_SNP [dm6]	G	A	1.261e^-4	0.821	INTRON spri	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	21742234	3R_21742234_SNP [dm3] 3R_25916512_SNP [dm6]	G	C	1.261e^-4	0.821	SYNONYMOUS_CODING CG42235 INTRON CG42235
3L	14840573	3L_14840573_SNP [dm3] 3L_14847473_SNP [dm6]	T	A	1.267e^-4	0.821	INTRON CG17839
3R	25738236	3R_25738236_SNP [dm3] 3R_29912514_SNP [dm6]	A	T	1.273e^-4	0.821	NON_SYNONYMOUS_CODING CG31036 DOWNSTREAM Capa
3L	10883038	3L_10883038_SNP [dm3] 3L_10889938_SNP [dm6]	G	A	1.277e^-4	0.821	UPSTREAM Cpr67Fa1 INTERGENIC
X	11278151	X_11278151_SNP [dm3] X_11384118_SNP [dm6]	A	G	1.281e^-4	0.821	UPSTREAM dlg1 INTRON dlg1	TF binding site BDTNP1_TFBS_dl
3L	901094	3L_901094_SNP [dm3] 3L_901094_SNP [dm6]	T	C	1.288e^-4	0.821	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2L	5861779	2L_5861779_SNP [dm3] 2L_5861779_SNP [dm6]	A	G	1.291e^-4	0.821	INTRON rau	TF binding site mE1_TFBS_cad
2L	5663843	2L_5663843_INS [dm3] 2L_5663843_INS [dm6]	G	GAAAGTATAATCG...	1.294e^-4	0.821	INTRON Hsp60C
3R	25065716	3R_25065716_SNP [dm3] 3R_29239994_SNP [dm6]	G	A	1.295e^-4	0.821	DOWNSTREAM CG31445 INTRON CG31427
X	8799417	X_8799417_SNP [dm3] X_8905384_SNP [dm6]	T	A	1.298e^-4	0.821	SPLICE_SITE_REGION e_r_ UTR_5_PRIME e_r_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	7487598	X_7487598_SNP [dm3] X_7593565_SNP [dm6]	C	T	1.307e^-4	0.821	INTERGENIC	regulatory region REDfly_CRMs
2L	17523411	2L_17523411_SNP [dm3] 2L_17523411_SNP [dm6]	T	A	1.307e^-4	0.821	SYNONYMOUS_CODING CG15143 INTRON Dhc36C
2R	10087525	2R_10087525_SNP [dm3] 2R_14200020_SNP [dm6]	A	G	1.313e^-4	0.821	SYNONYMOUS_CODING VGAT	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	19287717	3L_19287717_SNP [dm3] 3L_19294617_SNP [dm6]	G	A	1.324e^-4	0.821	UPSTREAM fal INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	5577692	X_5577692_SNP [dm3] X_5683659_SNP [dm6]	G	A	1.328e^-4	0.821	SYNONYMOUS_CODING CG42449	TF binding site mE1_TFBS_chinmo
3R	23663024	3R_23663024_SNP [dm3] 3R_27837302_SNP [dm6]	G	C	1.330e^-4	0.821	INTRON CG34353
2L	5667950	2L_5667950_SNP [dm3] 2L_5667950_SNP [dm6]	T	A	1.334e^-4	0.821	INTRON Hsp60C
2R	16664970	2R_16664970_SNP [dm3] 2R_20777465_SNP [dm6]	T	A	1.344e^-4	0.821	SYNONYMOUS_CODING CG43710 DOWNSTREAM CG43711
3R	10150587	3R_10150587_SNP [dm3] 3R_14324865_SNP [dm6]	T	A	1.349e^-4	0.821	SYNONYMOUS_CODING Afti	TF binding site mE1_TFBS_sens
3L	4908021	3L_4908021_DEL [dm3] 3L_4908021_DEL [dm6]	TGACAATAAAACACGAATTT...	T	1.379e^-4	0.821	INTERGENIC
3R	26951257	3R_26951257_SNP [dm3] 3R_31125535_SNP [dm6]	T	C	1.384e^-4	0.821	UPSTREAM CG15554 INTERGENIC
3R	26921195	3R_26921195_SNP [dm3] 3R_31095473_SNP [dm6]	G	T	1.388e^-4	0.821	INTRON CG11317
2L	936011	2L_936011_SNP [dm3] 2L_936011_SNP [dm6]	G	A	1.415e^-4	0.821	INTRON CG4341	TF binding site mE1_TFBS_Trl
3L	1728898	3L_1728898_SNP [dm3] 3L_1728898_SNP [dm6]	A	T	1.419e^-4	0.821	INTRON drpr	TF binding site mE1_TFBS_sens
2L	20696217	2L_20696217_SNP [dm3] 2L_20696217_SNP [dm6]	C	T	1.420e^-4	0.821	INTRON Hr38
3R	13379492	3R_13379492_SNP [dm3] 3R_17553770_SNP [dm6]	T	A	1.425e^-4	0.821	INTERGENIC
X	10732412	X_10732412_INS [dm3] X_10838379_INS [dm6]	A	ACGA	1.439e^-4	0.821	UPSTREAM CG15210 INTRON sbr
3R	19746046	3R_19746046_SNP [dm3] 3R_23920324_SNP [dm6]	C	T	1.440e^-4	0.821	SYNONYMOUS_CODING sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1739246	3L_1739246_SNP [dm3] 3L_1739246_SNP [dm6]	T	A	1.443e^-4	0.821	UTR_5_PRIME Gk INTRON Gk	TF binding site BDTNP1_TFBS_hb
3R	13727314	3R_13727314_SNP [dm3] 3R_17901592_SNP [dm6]	C	A	1.448e^-4	0.821	INTRON Rim
2R	19179899	2R_19179899_SNP [dm3] 2R_23292376_SNP [dm6]	C	A	1.453e^-4	0.821	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	14284708	3R_14284708_SNP [dm3] 3R_18458986_SNP [dm6]	C	T	1.456e^-4	0.821	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8392246	3L_8392246_SNP [dm3] 3L_8399146_SNP [dm6]	T	A	1.457e^-4	0.821	INTRON CG7120
3R	1961707	3R_1961707_SNP [dm3] 3R_6135985_SNP [dm6]	T	G	1.462e^-4	0.821	INTERGENIC
2L	2424463	2L_2424463_INS [dm3] 2L_2424463_INS [dm6]	A	AA	1.465e^-4	0.821	UTR_3_PRIME CG9886 UPSTREAM CG44139
2R	7024252	2R_7024252_SNP [dm3] 2R_11136747_SNP [dm6]	T	C	1.466e^-4	0.821	INTRON BBS4
2R	17388029	2R_17388029_SNP [dm3] 2R_21500524_SNP [dm6]	T	A	1.467e^-4	0.821	NON_SYNONYMOUS_CODING TAF1C-like	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4608728	3L_4608728_SNP [dm3] 3L_4608728_SNP [dm6]	T	C	1.468e^-4	0.821	INTRON Src64B
3L	5928589	3L_5928589_SNP [dm3] 3L_5935489_SNP [dm6]	T	G	1.468e^-4	0.821	UPSTREAM CG33993 INTRON CG33993
3R	16018144	3R_16018144_SNP [dm3] 3R_20192422_SNP [dm6]	C	T	1.470e^-4	0.821	INTERGENIC
2R	10087495	2R_10087495_SNP [dm3] 2R_14199990_SNP [dm6]	A	G	1.473e^-4	0.821	SYNONYMOUS_CODING VGAT	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9223983	2L_9223983_SNP [dm3] 2L_9223983_SNP [dm6]	C	T	1.474e^-4	0.821	INTRON tai	TF binding site mE1_TFBS_Kr mE1_TFBS_Trl
3L	3558299	3L_3558299_SNP [dm3] 3L_3558299_SNP [dm6]	G	T	1.475e^-4	0.821	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15648374	3R_15648374_SNP [dm3] 3R_19822652_SNP [dm6]	G	A	1.476e^-4	0.821	INTRON bnl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2676096	3R_2676096_SNP [dm3] 3R_6850374_SNP [dm6]	G	T	1.483e^-4	0.821	UPSTREAM Scr INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25186213	3R_25186213_INS [dm3] 3R_29360491_INS [dm6]	G	GTCG	1.489e^-4	0.821	INTERGENIC
3L	3769188	3L_3769188_INS [dm3] 3L_3769188_INS [dm6]	T	TT	1.492e^-4	0.821	INTRON CG32264
2R	19663762	2R_19663762_SNP [dm3] 2R_23776239_SNP [dm6]	T	G	1.493e^-4	0.821	INTRON CG9850
3R	4291403	3R_4291403_SNP [dm3] 3R_8465681_SNP [dm6]	G	A	1.503e^-4	0.821	INTRON CG45263	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20164216	3R_20164216_SNP [dm3] 3R_24338494_SNP [dm6]	C	T	1.503e^-4	0.821	NON_SYNONYMOUS_CODING CG6432 UPSTREAM mir-1015	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10075669	3R_10075669_SNP [dm3] 3R_14249947_SNP [dm6]	T	A	1.507e^-4	0.821	INTERGENIC
3R	9916057	3R_9916057_DEL [dm3] 3R_14090335_DEL [dm6]	CTAA	C	1.515e^-4	0.821	UPSTREAM Npc2b INTRON Npc2b
X	19610156	X_19610156_SNP [dm3] X_19716123_SNP [dm6]	T	A	1.516e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14074793	3L_14074793_SNP [dm3] 3L_14081693_SNP [dm6]	T	C	1.520e^-4	0.821	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_cad
3R	11595989	3R_11595989_SNP [dm3] 3R_15770267_SNP [dm6]	T	C	1.527e^-4	0.821	INTERGENIC
3L	14437850	3L_14437850_SNP [dm3] 3L_14444750_SNP [dm6]	T	C	1.528e^-4	0.821	INTRON bbg	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	13870656	3L_13870656_SNP [dm3] 3L_13877556_SNP [dm6]	C	T	1.528e^-4	0.821	INTRON dysc
2R	3631015	2R_3631015_SNP [dm3] 2R_7743510_SNP [dm6]	C	T	1.538e^-4	0.821	INTRON CG30497 & 1 other
2R	12501441	2R_12501441_SNP [dm3] 2R_16613936_SNP [dm6]	G	A	1.541e^-4	0.821	INTRON CG5065
3L	8954248	3L_8954248_SNP [dm3] 3L_8961148_SNP [dm6]	C	T	1.553e^-4	0.821	DOWNSTREAM CG5660 & 1 other INTERGENIC
2L	5858923	2L_5858923_SNP [dm3] 2L_5858923_SNP [dm6]	A	C	1.559e^-4	0.821	DOWNSTREAM rau INTERGENIC
3L	16539634	3L_16539634_SNP [dm3] 3L_16546534_SNP [dm6]	A	G	1.566e^-4	0.821	UPSTREAM CG13033 INTERGENIC	TF binding site mE1_TFBS_cnc
X	16928515	X_16928515_SNP [dm3] X_17034482_SNP [dm6]	T	A	1.568e^-4	0.821	INTRON CG45002
2R	19179759	2R_19179759_SNP [dm3] 2R_23292236_SNP [dm6]	C	T	1.575e^-4	0.821	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5009662	2R_5009662_SNP [dm3] 2R_9122157_SNP [dm6]	T	A	1.579e^-4	0.821	UTR_5_PRIME GstE13 UPSTREAM GstE13 DOWNSTREAM Su_var_2-10
3R	13741192	3R_13741192_SNP [dm3] 3R_17915470_SNP [dm6]	C	A	1.587e^-4	0.821	INTRON Rim
3R	1954522	3R_1954522_SNP [dm3] 3R_6128800_SNP [dm6]	T	A	1.599e^-4	0.821	UPSTREAM CR43487 INTERGENIC
3R	20587125	3R_20587125_SNP [dm3] 3R_24761403_SNP [dm6]	T	A	1.599e^-4	0.821	SYNONYMOUS_CODING AstA DOWNSTREAM asp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5665797	2L_5665797_SNP [dm3] 2L_5665797_SNP [dm6]	G	A	1.604e^-4	0.821	INTRON Hsp60C
2R	19649882	2R_19649882_SNP [dm3] 2R_23762359_SNP [dm6]	C	T	1.604e^-4	0.821	INTRON CG9850
3R	15648435	3R_15648435_SNP [dm3] 3R_19822713_SNP [dm6]	C	T	1.605e^-4	0.821	INTRON bnl	TF binding site mE1_TFBS_HSA
2L	17214212	2L_17214212_SNP [dm3] 2L_17214212_SNP [dm6]	A	T	1.621e^-4	0.821	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15940859	2R_15940859_SNP [dm3] 2R_20053354_SNP [dm6]	C	T	1.624e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3R	26919329	3R_26919329_SNP [dm3] 3R_31093607_SNP [dm6]	T	C	1.626e^-4	0.821	INTRON CG11317
2R	17102759	2R_17102759_SNP [dm3] 2R_21215254_SNP [dm6]	C	A	1.631e^-4	0.821	UPSTREAM CG4302 DOWNSTREAM CG15661 INTERGENIC
2L	6292507	2L_6292507_SNP [dm3] 2L_6292507_SNP [dm6]	C	A	1.648e^-4	0.821	DOWNSTREAM Ddr INTRON Ddr
2L	7972030	2L_7972030_INS [dm3] 2L_7972030_INS [dm6]	G	GAAAGAGCGCAGGG...	1.650e^-4	0.821	INTRON Snoo
3L	12580390	3L_12580390_SNP [dm3] 3L_12587290_SNP [dm6]	T	A	1.651e^-4	0.821	INTRON ara
2L	5670445	2L_5670445_SNP [dm3] 2L_5670445_SNP [dm6]	T	C	1.660e^-4	0.821	SYNONYMOUS_CODING Hsp60C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27612212	3R_27612212_SNP [dm3] 3R_31786490_SNP [dm6]	T	C	1.663e^-4	0.821	SYNONYMOUS_CODING faf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4620261	X_4620261_DEL [dm3] X_4726228_DEL [dm6]	CC	C	1.668e^-4	0.821	SPLICE_SITE_REGION Proc-R INTRON Proc-R	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3565057	2L_3565057_SNP [dm3] 2L_3565057_SNP [dm6]	G	A	1.668e^-4	0.821	INTERGENIC
3R	18834446	3R_18834446_SNP [dm3] 3R_23008724_SNP [dm6]	A	T	1.682e^-4	0.821	INTRON CG34375
3L	10299931	3L_10299931_SNP [dm3] 3L_10306831_SNP [dm6]	T	C	1.684e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	14971437	3R_14971437_SNP [dm3] 3R_19145715_SNP [dm6]	G	A	1.687e^-4	0.821	SYNONYMOUS_CODING Ppcs
3R	10151042	3R_10151042_SNP [dm3] 3R_14325320_SNP [dm6]	G	C	1.709e^-4	0.821	NON_SYNONYMOUS_CODING Afti	TF binding site mE1_TFBS_sens
3R	1936866	3R_1936866_SNP [dm3] 3R_6111144_SNP [dm6]	T	A	1.711e^-4	0.821	UPSTREAM Obp83ef DOWNSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
3R	25738184	3R_25738184_SNP [dm3] 3R_29912462_SNP [dm6]	A	T	1.716e^-4	0.821	DOWNSTREAM Capa INTRON CG31036
3L	3407237	3L_3407237_SNP [dm3] 3L_3407237_SNP [dm6]	G	C	1.719e^-4	0.821	INTRON sty
X	7331771	X_7331771_SNP [dm3] X_7437738_SNP [dm6]	C	G	1.719e^-4	0.821	INTERGENIC
3L	13840339	3L_13840339_SNP [dm3] 3L_13847239_SNP [dm6]	C	G	1.720e^-4	0.821	INTRON Hml
2R	17445642	2R_17445642_SNP [dm3] 2R_21558137_SNP [dm6]	T	C	1.721e^-4	0.821	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	14078837	3L_14078837_SNP [dm3] 3L_14085737_SNP [dm6]	A	G	1.723e^-4	0.821	UTR_3_PRIME CG8100 DOWNSTREAM CG8100
3R	9170570	3R_9170570_SNP [dm3] 3R_13344848_SNP [dm6]	C	A	1.737e^-4	0.821	UTR_3_PRIME PK2-R1
3R	25069988	3R_25069988_SNP [dm3] 3R_29244266_SNP [dm6]	A	C	1.738e^-4	0.821	DOWNSTREAM SP1029 INTRON CG31445
2L	6599983	2L_6599983_DEL [dm3] 2L_6599983_DEL [dm6]	CA	C	1.738e^-4	0.821	INTRON CG11319
3L	2733801	3L_2733801_SNP [dm3] 3L_2733801_SNP [dm6]	C	G	1.740e^-4	0.821	INTRON Mrtf
3L	18411419	3L_18411419_SNP [dm3] 3L_18418319_SNP [dm6]	A	T	1.740e^-4	0.821	INTERGENIC
2L	13863315	2L_13863315_SNP [dm3] 2L_13863315_SNP [dm6]	A	T	1.752e^-4	0.821	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2R	15940885	2R_15940885_SNP [dm3] 2R_20053380_SNP [dm6]	C	T	1.758e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3L	20621956	3L_20621956_SNP [dm3] 3L_20628856_SNP [dm6]	C	A	1.759e^-4	0.821	UPSTREAM CR44683 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	23665006	3R_23665006_SNP [dm3] 3R_27839284_SNP [dm6]	T	C	1.761e^-4	0.821	INTRON CG34353
3L	4632008	3L_4632008_SNP [dm3] 3L_4632008_SNP [dm6]	A	C	1.773e^-4	0.821	INTRON axo
2R	20060987	2R_20060987_SNP [dm3] 2R_24173464_SNP [dm6]	C	T	1.794e^-4	0.821	UTR_3_PRIME CG3328 DOWNSTREAM mRpS17	TF binding site mE1_TFBS_chinmo
X	18404675	X_18404675_SNP [dm3] X_18510642_SNP [dm6]	G	A	1.796e^-4	0.821	INTRON Ggt-1	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	4924610	3R_4924610_SNP [dm3] 3R_9098888_SNP [dm6]	T	A	1.799e^-4	0.821	INTRON pum
3R	10154323	3R_10154323_SNP [dm3] 3R_14328601_SNP [dm6]	T	C	1.807e^-4	0.821	SYNONYMOUS_CODING spn-B DOWNSTREAM CG3321 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23652323	3R_23652323_SNP [dm3] 3R_27826601_SNP [dm6]	C	A	1.814e^-4	0.821	INTRON CG34353	TF binding site BDTNP1_TFBS_da
2R	10850954	2R_10850954_SNP [dm3] 2R_14963449_SNP [dm6]	T	A	1.815e^-4	0.821	UTR_5_PRIME ckn UPSTREAM aPKC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	23745341	3R_23745341_SNP [dm3] 3R_27919619_SNP [dm6]	A	T	1.825e^-4	0.821	UPSTREAM CG33213 DOWNSTREAM CG12259 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	21349043	X_21349043_SNP [dm3] X_21478016_SNP [dm6]	C	T	1.830e^-4	0.821	SYNONYMOUS_CODING Ir20a
2R	6603812	2R_6603812_SNP [dm3] 2R_10716307_SNP [dm6]	A	G	1.834e^-4	0.821	SYNONYMOUS_CODING stan
2L	6715604	2L_6715604_SNP [dm3] 2L_6715604_SNP [dm6]	A	G	1.837e^-4	0.821	INTRON AkhR
2R	16243870	2R_16243870_SNP [dm3] 2R_20356365_SNP [dm6]	T	G	1.838e^-4	0.821	INTERGENIC
2R	715288	2R_715288_SNP [dm3] 2R_4827783_SNP [dm6]	G	C	1.845e^-4	0.821	INTERGENIC	transposable element FlyBase
2L	4702230	2L_4702230_SNP [dm3] 2L_4702230_SNP [dm6]	T	G	1.848e^-4	0.821	UPSTREAM Taf12L INTRON CG34351
3L	10728342	3L_10728342_INS [dm3] 3L_10735242_INS [dm6]	T	TTAT	1.855e^-4	0.821	INTERGENIC
2L	5676235	2L_5676235_SNP [dm3] 2L_5676235_SNP [dm6]	A	G	1.856e^-4	0.821	INTERGENIC
2L	5670692	2L_5670692_INS [dm3] 2L_5670692_INS [dm6]	T	TT	1.859e^-4	0.821	UTR_3_PRIME Hsp60C	TF binding site mE1_TFBS_chinmo
2L	10092944	2L_10092944_SNP [dm3] 2L_10092944_SNP [dm6]	G	A	1.859e^-4	0.821	UPSTREAM CG13133 INTRON CG44153
3L	14695023	3L_14695023_SNP [dm3] 3L_14701923_SNP [dm6]	T	C	1.863e^-4	0.821	UPSTREAM CG17177 INTRON ome
3R	27612149	3R_27612149_SNP [dm3] 3R_31786427_SNP [dm6]	C	T	1.865e^-4	0.821	SYNONYMOUS_CODING faf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22991424	3R_22991424_SNP [dm3] 3R_27165702_SNP [dm6]	A	G	1.879e^-4	0.821	UPSTREAM spn-D & 1 other DOWNSTREAM ppk31 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3R	4924611	3R_4924611_DEL [dm3] 3R_9098889_DEL [dm6]	TC	T	1.883e^-4	0.821	INTRON pum
3R	25298760	3R_25298760_SNP [dm3] 3R_29473038_SNP [dm6]	T	C	1.887e^-4	0.821	INTRON Ptp99A
3R	16018277	3R_16018277_SNP [dm3] 3R_20192555_SNP [dm6]	T	A	1.888e^-4	0.821	INTERGENIC
2R	18572060	2R_18572060_SNP [dm3] 2R_22684555_SNP [dm6]	A	G	1.888e^-4	0.821	DOWNSTREAM ppa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15990442	2L_15990442_SNP [dm3] 2L_15990442_SNP [dm6]	C	A	1.894e^-4	0.821	DOWNSTREAM CR43412 INTERGENIC
3R	23653741	3R_23653741_SNP [dm3] 3R_27828019_SNP [dm6]	A	G	1.900e^-4	0.821	INTRON CG34353
3R	9271527	3R_9271527_SNP [dm3] 3R_13445805_SNP [dm6]	G	A	1.901e^-4	0.821	INTERGENIC
2L	3870261	2L_3870261_SNP [dm3] 2L_3870261_SNP [dm6]	T	A	1.903e^-4	0.821	SYNONYMOUS_CODING Cep97	TF binding site mE1_TFBS_sens
X	5573289	X_5573289_SNP [dm3] X_5679256_SNP [dm6]	A	C	1.903e^-4	0.821	INTRON Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3L	812546	3L_812546_SNP [dm3] 3L_812546_SNP [dm6]	C	T	1.908e^-4	0.821	UPSTREAM CR44537 INTERGENIC
3R	9178100	3R_9178100_SNP [dm3] 3R_13352378_SNP [dm6]	C	A	1.922e^-4	0.821	INTERGENIC
3L	13870278	3L_13870278_DEL [dm3] 3L_13877178_DEL [dm6]	TC	T	1.935e^-4	0.821	INTRON dysc
3L	2326702	3L_2326702_SNP [dm3] 3L_2326702_SNP [dm6]	C	T	1.947e^-4	0.821	INTRON MsR1
3R	4924608	3R_4924608_SNP [dm3] 3R_9098886_SNP [dm6]	T	C	1.950e^-4	0.821	INTRON pum
X	10283532	X_10283532_SNP [dm3] X_10389499_SNP [dm6]	A	G	1.951e^-4	0.821	INTRON flw
2R	16240823	2R_16240823_SNP [dm3] 2R_20353318_SNP [dm6]	C	A	1.956e^-4	0.821	DOWNSTREAM CG11192 INTERGENIC
3R	26119777	3R_26119777_SNP [dm3] 3R_30294055_SNP [dm6]	C	G	1.957e^-4	0.821	INTRON hdc	TF binding site BDTNP1_TFBS_dl
X	9136861	X_9136861_SNP [dm3] X_9242828_SNP [dm6]	G	T	1.964e^-4	0.821	NON_SYNONYMOUS_CODING mxc UPSTREAM Larp7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	24043451	3R_24043451_SNP [dm3] 3R_28217729_SNP [dm6]	A	T	1.965e^-4	0.821	INTRON CG34354
2R	6814712	2R_6814712_SNP [dm3] 2R_10927207_SNP [dm6]	C	A	1.994e^-4	0.821	INTERGENIC
3R	27003046	3R_27003046_SNP [dm3] 3R_31177324_SNP [dm6]	A	G	1.994e^-4	0.821	UTR_3_PRIME Gycbeta100B
3R	4659343	3R_4659343_SNP [dm3] 3R_8833621_SNP [dm6]	G	A	1.997e^-4	0.821	SYNONYMOUS_CODING pyd INTRON pyd	TF binding site mE1_TFBS_cad
3R	23664223	3R_23664223_SNP [dm3] 3R_27838501_SNP [dm6]	C	T	1.999e^-4	0.821	INTRON CG34353
2R	15087938	2R_15087938_SNP [dm3] 2R_19200433_SNP [dm6]	G	T	2.005e^-4	0.821	INTRON hppy
3R	23658768	3R_23658768_SNP [dm3] 3R_27833046_SNP [dm6]	A	T	2.005e^-4	0.821	INTRON CG34353
3L	4614939	3L_4614939_SNP [dm3] 3L_4614939_SNP [dm6]	T	A	2.007e^-4	0.821	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19287756	3L_19287756_DEL [dm3] 3L_19294656_DEL [dm6]	GTCTACG	G	2.011e^-4	0.821	UPSTREAM fal INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	5902794	2L_5902794_SNP [dm3] 2L_5902794_SNP [dm6]	T	C	2.017e^-4	0.821	DOWNSTREAM CG9021 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	17214214	2L_17214214_SNP [dm3] 2L_17214214_SNP [dm6]	T	A	2.026e^-4	0.821	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8395126	2R_8395126_SNP [dm3] 2R_12507621_SNP [dm6]	T	G	2.028e^-4	0.821	UPSTREAM fdl DOWNSTREAM vis INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
X	19360851	X_19360851_SNP [dm3] X_19466818_SNP [dm6]	T	G	2.031e^-4	0.821	INTRON kek5
2L	3517254	2L_3517254_SNP [dm3] 2L_3517254_SNP [dm6]	A	G	2.042e^-4	0.821	UTR_3_PRIME CG17593 DOWNSTREAM CG3213 & 1 other	TF binding site mE1_TFBS_cad
2L	5663848	2L_5663848_SNP [dm3] 2L_5663848_SNP [dm6]	T	A	2.043e^-4	0.821	INTRON Hsp60C
3R	10013601	3R_10013601_SNP [dm3] 3R_14187879_SNP [dm6]	C	T	2.045e^-4	0.821	INTRON Dop1R1
2L	5665744	2L_5665744_SNP [dm3] 2L_5665744_SNP [dm6]	G	A	2.047e^-4	0.821	INTRON Hsp60C
X	21329313	X_21329313_SNP [dm3] X_21458286_SNP [dm6]	T	A	2.060e^-4	0.821	UPSTREAM CG42343 INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	24043646	3R_24043646_SNP [dm3] 3R_28217924_SNP [dm6]	T	C	2.062e^-4	0.821	INTRON CG34354
3L	2733551	3L_2733551_SNP [dm3] 3L_2733551_SNP [dm6]	C	T	2.063e^-4	0.821	INTRON Mrtf
3R	19464336	3R_19464336_SNP [dm3] 3R_23638614_SNP [dm6]	A	C	2.065e^-4	0.821	INTRON CG31145
3L	21843689	3L_21843689_SNP [dm3] 3L_21850589_SNP [dm6]	G	A	2.066e^-4	0.821	INTRON mub
2L	7147960	2L_7147960_SNP [dm3] 2L_7147960_SNP [dm6]	T	G	2.067e^-4	0.821	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	6814760	2R_6814760_SNP [dm3] 2R_10927255_SNP [dm6]	C	A	2.074e^-4	0.821	INTERGENIC
3L	8224538	3L_8224538_DEL [dm3] 3L_8231438_DEL [dm6]	GCAAATAGCTTACGCCCCGT...	A	2.075e^-4	0.821	DOWNSTREAM eIF4E-3 & 1 other EXON CR43953
2R	16241021	2R_16241021_SNP [dm3] 2R_20353516_SNP [dm6]	T	A	2.078e^-4	0.821	DOWNSTREAM CG11192 INTERGENIC
2L	4014493	2L_4014493_SNP [dm3] 2L_4014493_SNP [dm6]	A	G	2.082e^-4	0.821	INTERGENIC
2R	710968	2R_710968_SNP [dm3] 2R_4823463_SNP [dm6]	T	A	2.082e^-4	0.821	INTRON CG17528	TF binding site mE1_TFBS_zfh1
3L	12566114	3L_12566114_SNP [dm3] 3L_12573014_SNP [dm6]	C	A	2.085e^-4	0.821	UPSTREAM sowah INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA
2R	9690762	2R_9690762_SNP [dm3] 2R_13803257_SNP [dm6]	T	C	2.086e^-4	0.821	INTRON Cpr50Cb	TF binding site mE1_TFBS_cad
2R	6449501	2R_6449501_SNP [dm3] 2R_10561996_SNP [dm6]	G	A	2.087e^-4	0.821	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16531273	3L_16531273_DEL [dm3] 3L_16538173_DEL [dm6]	ATGAA	A	2.091e^-4	0.821	INTRON CG43373
3R	25157860	3R_25157860_SNP [dm3] 3R_29332138_SNP [dm6]	T	A	2.097e^-4	0.821	INTERGENIC
2L	7971071	2L_7971071_SNP [dm3] 2L_7971071_SNP [dm6]	A	G	2.097e^-4	0.821	INTRON Snoo
2L	7490346	2L_7490346_SNP [dm3] 2L_7490346_SNP [dm6]	C	T	2.098e^-4	0.821	INTRON Ziz
2L	5170036	2L_5170036_SNP [dm3] 2L_5170036_SNP [dm6]	C	T	2.100e^-4	0.821	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	7025374	2L_7025374_SNP [dm3] 2L_7025374_SNP [dm6]	G	A	2.106e^-4	0.821	SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
2R	13239832	2R_13239832_SNP [dm3] 2R_17352327_SNP [dm6]	A	C	2.110e^-4	0.821	NON_SYNONYMOUS_CODING mbl INTRON mbl
2R	14595440	2R_14595440_SNP [dm3] 2R_18707935_SNP [dm6]	C	T	2.112e^-4	0.821	SYNONYMOUS_CODING CG15073 DOWNSTREAM CG15087
X	2447639	X_2447639_SNP [dm3] X_2553606_SNP [dm6]	C	T	2.117e^-4	0.821	UPSTREAM Pdfr INTRON Pdfr
X	21863317	X_21863317_SNP [dm3] X_22461481_SNP [dm6]	A	C	2.118e^-4	0.821	INTRON CG14619	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3L	21790512	3L_21790512_SNP [dm3] 3L_21797412_SNP [dm6]	T	A	2.122e^-4	0.821	INTERGENIC
2R	3631012	2R_3631012_SNP [dm3] 2R_7743507_SNP [dm6]	T	A	2.123e^-4	0.821	INTRON CG30497 & 1 other
2R	13559358	2R_13559358_SNP [dm3] 2R_17671853_SNP [dm6]	C	T	2.126e^-4	0.821	DOWNSTREAM CR44404 & 1 other INTRON P32	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5610729	2L_5610729_SNP [dm3] 2L_5610729_SNP [dm6]	C	G	2.128e^-4	0.821	INTRON CG14010
3R	23660160	3R_23660160_SNP [dm3] 3R_27834438_SNP [dm6]	G	A	2.132e^-4	0.821	UTR_5_PRIME CG34353
2R	17469393	2R_17469393_SNP [dm3] 2R_21581888_SNP [dm6]	C	A	2.145e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	4188722	2R_4188722_SNP [dm3] 2R_8301217_SNP [dm6]	C	T	2.150e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22057392	3R_22057392_SNP [dm3] 3R_26231670_SNP [dm6]	A	G	2.152e^-4	0.821	SYNONYMOUS_CODING CG12290	TF binding site mE1_TFBS_chinmo
3L	17596909	3L_17596909_DEL [dm3] 3L_17603809_DEL [dm6]	TC	A	2.156e^-4	0.821	INTRON Eip74EF
2R	19325503	2R_19325503_SNP [dm3] 2R_23437980_SNP [dm6]	C	T	2.159e^-4	0.821	INTERGENIC
2R	3564727	2R_3564727_SNP [dm3] 2R_7677222_SNP [dm6]	A	T	2.167e^-4	0.821	UTR_3_PRIME CG1399 UPSTREAM U2A	TF binding site BDTNP1_TFBS_dl
3L	19287718	3L_19287718_SNP [dm3] 3L_19294618_SNP [dm6]	T	A	2.168e^-4	0.821	UPSTREAM fal INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	8957870	3L_8957870_DEL [dm3] 3L_8964770_DEL [dm6]	TT	T	2.168e^-4	0.821	UPSTREAM CG5660 DOWNSTREAM CG5653 INTERGENIC
3R	10044668	3R_10044668_SNP [dm3] 3R_14218946_SNP [dm6]	G	A	2.172e^-4	0.821	SYNONYMOUS_CODING CG31326
3L	3926109	3L_3926109_SNP [dm3] 3L_3926109_SNP [dm6]	T	G	2.182e^-4	0.821	UPSTREAM Eip63F-1 INTRON Eip63F-1
2R	10029224	2R_10029224_INS [dm3] 2R_14141719_INS [dm6]	G	GCTG	2.188e^-4	0.821	UPSTREAM Prosap INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19329982	2R_19329982_SNP [dm3] 2R_23442459_SNP [dm6]	C	T	2.188e^-4	0.821	INTERGENIC
X	14350193	X_14350193_SNP [dm3] X_14456160_SNP [dm6]	A	G	2.189e^-4	0.821	INTRON dpr8
3R	7028351	3R_7028351_DEL [dm3] 3R_11202629_DEL [dm6]	AAGTTTAAAGTCA...	A	2.202e^-4	0.821	UPSTREAM cu INTRON cu
X	8709624	X_8709624_SNP [dm3] X_8815591_SNP [dm6]	A	G	2.203e^-4	0.821	INTERGENIC
3R	23664993	3R_23664993_SNP [dm3] 3R_27839271_SNP [dm6]	G	A	2.206e^-4	0.821	INTRON CG34353
X	18453557	X_18453557_SNP [dm3] X_18559524_SNP [dm6]	T	A	2.206e^-4	0.821	INTRON Bx
X	19373096	X_19373096_SNP [dm3] X_19479063_SNP [dm6]	A	G	2.211e^-4	0.821	SYNONYMOUS_CODING CG32533 UPSTREAM Nat1 DOWNSTREAM mRpS14	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10445307	2L_10445307_DEL [dm3] 2L_10445307_DEL [dm6]	TACGTTCAATGCCCATT...	T	2.221e^-4	0.821	INTRON loh
3L	4707613	3L_4707613_SNP [dm3] 3L_4707613_SNP [dm6]	T	C	2.226e^-4	0.821	SPLICE_SITE_REGION RhoGEF64C INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl
3R	8232154	3R_8232154_SNP [dm3] 3R_12406432_SNP [dm6]	A	C	2.226e^-4	0.821	UPSTREAM CG5167 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_jumu
2L	15385584	2L_15385584_SNP [dm3] 2L_15385584_SNP [dm6]	G	T	2.230e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	4609100	3L_4609100_SNP [dm3] 3L_4609100_SNP [dm6]	C	G	2.255e^-4	0.821	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	16018369	3R_16018369_SNP [dm3] 3R_20192647_SNP [dm6]	C	A	2.255e^-4	0.821	INTERGENIC
X	18452574	X_18452574_SNP [dm3] X_18558541_SNP [dm6]	A	G	2.259e^-4	0.821	INTRON Bx
2L	3963540	2L_3963540_SNP [dm3] 2L_3963540_SNP [dm6]	G	T	2.263e^-4	0.821	INTRON fred	TF binding site mE1_TFBS_bab1
2R	6917215	2R_6917215_SNP [dm3] 2R_11029710_SNP [dm6]	G	T	2.267e^-4	0.821	INTRON luna
2R	18149579	2R_18149579_SNP [dm3] 2R_22262074_SNP [dm6]	A	G	2.274e^-4	0.821	INTRON dve
3R	25097608	3R_25097608_SNP [dm3] 3R_29271886_SNP [dm6]	A	T	2.274e^-4	0.821	INTERGENIC	regulatory region REDfly_CRMs
X	3263054	X_3263054_SNP [dm3] X_3369021_SNP [dm6]	A	G	2.288e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
2R	19988054	2R_19988054_SNP [dm3] 2R_24100531_SNP [dm6]	C	T	2.289e^-4	0.821	SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15465243	2R_15465243_SNP [dm3] 2R_19577738_SNP [dm6]	T	C	2.292e^-4	0.821	INTRON sm
2L	3685668	2L_3685668_SNP [dm3] 2L_3685668_SNP [dm6]	G	A	2.292e^-4	0.821	INTRON CG34340
2L	5169597	2L_5169597_SNP [dm3] 2L_5169597_SNP [dm6]	G	C	2.292e^-4	0.821	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	13881921	2L_13881921_SNP [dm3] 2L_13881921_SNP [dm6]	T	C	2.303e^-4	0.821	INTRON CenG1A
3L	3923754	3L_3923754_SNP [dm3] 3L_3923754_SNP [dm6]	C	T	2.315e^-4	0.821	INTRON Eip63F-1
3R	26700127	3R_26700127_SNP [dm3] 3R_30874405_SNP [dm6]	C	T	2.318e^-4	0.821	UTR_3_PRIME CG15546	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18173839	2R_18173839_SNP [dm3] 2R_22286334_SNP [dm6]	A	C	2.321e^-4	0.821	UTR_3_PRIME dve
3R	8159558	3R_8159558_SNP [dm3] 3R_12333836_SNP [dm6]	T	C	2.323e^-4	0.821	INTERGENIC
2L	5169761	2L_5169761_SNP [dm3] 2L_5169761_SNP [dm6]	T	C	2.335e^-4	0.821	SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	6099021	2R_6099021_SNP [dm3] 2R_10211516_SNP [dm6]	A	T	2.338e^-4	0.821	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	19649931	2R_19649931_SNP [dm3] 2R_23762408_SNP [dm6]	G	T	2.340e^-4	0.821	INTRON CG9850
2R	7016022	2R_7016022_SNP [dm3] 2R_11128517_SNP [dm6]	C	T	2.340e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	7535737	2L_7535737_SNP [dm3] 2L_7535737_SNP [dm6]	A	G	2.343e^-4	0.821	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_cad
3L	13083499	3L_13083499_SNP [dm3] 3L_13090399_SNP [dm6]	A	G	2.345e^-4	0.821	UPSTREAM CG11251 INTERGENIC
X	7331220	X_7331220_SNP [dm3] X_7437187_SNP [dm6]	C	A	2.348e^-4	0.821	INTERGENIC
2R	16479008	2R_16479008_SNP [dm3] 2R_20591503_SNP [dm6]	T	A	2.350e^-4	0.821	INTRON bl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18130173	X_18130173_SNP [dm3] X_18236140_SNP [dm6]	T	A	2.356e^-4	0.821	INTERGENIC
3R	7340997	3R_7340997_SNP [dm3] 3R_11515275_SNP [dm6]	A	G	2.358e^-4	0.821	INTERGENIC
3R	9267290	3R_9267290_SNP [dm3] 3R_13441568_SNP [dm6]	C	T	2.364e^-4	0.821	INTERGENIC
2L	3690640	2L_3690640_SNP [dm3] 2L_3690640_SNP [dm6]	A	T	2.375e^-4	0.821	INTRON CG34340
2L	4105190	2L_4105190_SNP [dm3] 2L_4105190_SNP [dm6]	A	C	2.382e^-4	0.821	INTRON ed
2L	12253880	2L_12253880_SNP [dm3] 2L_12253880_SNP [dm6]	G	A	2.382e^-4	0.821	INTRON aret
2R	16020586	2R_16020586_SNP [dm3] 2R_20133081_SNP [dm6]	T	C	2.382e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_inv
2L	13866273	2L_13866273_SNP [dm3] 2L_13866273_SNP [dm6]	C	T	2.389e^-4	0.821	INTRON CenG1A EXON CR44848	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
X	22239084	X_22239084_INS [dm3] X_22837248_INS [dm6]	A	AA	2.393e^-4	0.821	UPSTREAM fog INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2447119	2L_2447119_SNP [dm3] 2L_2447119_SNP [dm6]	C	G	2.395e^-4	0.821	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
2R	13052123	2R_13052123_SNP [dm3] 2R_17164618_SNP [dm6]	C	T	2.398e^-4	0.821	DOWNSTREAM CG10953 INTERGENIC
3L	3709916	3L_3709916_SNP [dm3] 3L_3709916_SNP [dm6]	A	G	2.410e^-4	0.821	DOWNSTREAM CR45675 INTERGENIC
3L	4907962	3L_4907962_SNP [dm3] 3L_4907962_SNP [dm6]	T	A	2.414e^-4	0.821	INTERGENIC
X	3263105	X_3263105_SNP [dm3] X_3369072_SNP [dm6]	G	C	2.424e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
2L	948785	2L_948785_SNP [dm3] 2L_948785_SNP [dm6]	G	A	2.429e^-4	0.821	INTRON CG4341
3R	24043599	3R_24043599_SNP [dm3] 3R_28217877_SNP [dm6]	C	T	2.433e^-4	0.821	INTRON CG34354
3R	5835692	3R_5835692_SNP [dm3] 3R_10009970_SNP [dm6]	G	A	2.434e^-4	0.821	SYNONYMOUS_CODING Mical INTRON Mical	TF binding site mE1_TFBS_cad
3L	11016118	3L_11016118_SNP [dm3] 3L_11023018_SNP [dm6]	T	C	2.435e^-4	0.821	UPSTREAM Fad2 INTERGENIC	TF binding site mE1_TFBS_cad
2L	17416341	2L_17416341_SNP [dm3] 2L_17416341_SNP [dm6]	T	C	2.437e^-4	0.821	NON_SYNONYMOUS_CODING Dif INTRON Dif	TF binding site mE1_TFBS_inv
3L	5277916	3L_5277916_SNP [dm3] 3L_5284816_SNP [dm6]	C	T	2.438e^-4	0.821	INTERGENIC
2R	10469725	2R_10469725_SNP [dm3] 2R_14582220_SNP [dm6]	A	C	2.438e^-4	0.821	INTRON ttv
3R	23660489	3R_23660489_SNP [dm3] 3R_27834767_SNP [dm6]	A	T	2.451e^-4	0.821	INTRON CG34353
3L	1263635	3L_1263635_SNP [dm3] 3L_1263635_SNP [dm6]	T	G	2.459e^-4	0.821	INTRON CG9134
2L	7490357	2L_7490357_SNP [dm3] 2L_7490357_SNP [dm6]	A	G	2.469e^-4	0.821	INTRON Ziz
3L	10042576	3L_10042576_SNP [dm3] 3L_10049476_SNP [dm6]	T	C	2.474e^-4	0.821	INTRON dpr6
3R	13372232	3R_13372232_SNP [dm3] 3R_17546510_SNP [dm6]	C	T	2.477e^-4	0.821	UTR_5_PRIME Prx3	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	9745898	X_9745898_SNP [dm3] X_9851865_SNP [dm6]	G	A	2.506e^-4	0.821	UTR_3_PRIME CG32698
2L	5861888	2L_5861888_SNP [dm3] 2L_5861888_SNP [dm6]	A	T	2.508e^-4	0.821	INTRON rau
3R	4138430	3R_4138430_SNP [dm3] 3R_8312708_SNP [dm6]	A	T	2.523e^-4	0.821	SYNONYMOUS_CODING CG11698 UPSTREAM CG11694 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo
3L	9597525	3L_9597525_SNP [dm3] 3L_9604425_SNP [dm6]	A	C	2.529e^-4	0.821	NON_SYNONYMOUS_CODING CG3280
3L	4632007	3L_4632007_SNP [dm3] 3L_4632007_SNP [dm6]	T	C	2.530e^-4	0.821	INTRON axo
3R	5742585	3R_5742585_SNP [dm3] 3R_9916863_SNP [dm6]	C	T	2.531e^-4	0.821	INTRON Glut4EF
3L	1728895	3L_1728895_SNP [dm3] 3L_1728895_SNP [dm6]	G	A	2.544e^-4	0.821	INTRON drpr	TF binding site mE1_TFBS_sens
3R	10918484	3R_10918484_SNP [dm3] 3R_15092762_SNP [dm6]	A	T	2.550e^-4	0.821	INTRON CG6966	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14832297	2R_14832297_DEL [dm3] 2R_18944792_DEL [dm6]	TT	T	2.553e^-4	0.821	INTRON sano
3L	13208171	3L_13208171_SNP [dm3] 3L_13215071_SNP [dm6]	T	C	2.555e^-4	0.821	DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	10732415	X_10732415_INS [dm3] X_10838382_INS [dm6]	A	AA	2.579e^-4	0.821	UPSTREAM CG15210 INTRON sbr
3L	9258031	3L_9258031_SNP [dm3] 3L_9264931_SNP [dm6]	A	C	2.581e^-4	0.821	INTRON GluRIB
2R	6781740	2R_6781740_SNP [dm3] 2R_10894235_SNP [dm6]	A	T	2.581e^-4	0.821	UTR_5_PRIME cag UPSTREAM CG12942 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	17281960	2R_17281960_SNP [dm3] 2R_21394455_SNP [dm6]	A	T	2.584e^-4	0.821	UTR_3_PRIME Sdc
3R	23663026	3R_23663026_DEL [dm3] 3R_27837304_DEL [dm6]	AAG	A	2.595e^-4	0.821	INTRON CG34353
2L	3565036	2L_3565036_DEL [dm3] 2L_3565036_DEL [dm6]	TTCATCTCCAACCCAGACT...	T	2.598e^-4	0.821	INTERGENIC
2R	13832202	2R_13832202_SNP [dm3] 2R_17944697_SNP [dm6]	T	C	2.611e^-4	0.821	INTERGENIC
X	5303658	X_5303658_DEL [dm3] X_5409625_DEL [dm6]	TGTAT	T	2.611e^-4	0.821	INTRON NAAT1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14284622	3R_14284622_SNP [dm3] 3R_18458900_SNP [dm6]	T	C	2.618e^-4	0.821	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5860824	2L_5860824_SNP [dm3] 2L_5860824_SNP [dm6]	A	G	2.618e^-4	0.821	SYNONYMOUS_CODING rau	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12243841	X_12243841_SNP [dm3] X_12349808_SNP [dm6]	G	T	2.620e^-4	0.821	INTERGENIC
3R	23654147	3R_23654147_SNP [dm3] 3R_27828425_SNP [dm6]	C	G	2.626e^-4	0.821	INTRON CG34353	TF binding site mE1_TFBS_chinmo
3L	16090736	3L_16090736_SNP [dm3] 3L_16097636_SNP [dm6]	A	T	2.628e^-4	0.821	UPSTREAM ms_3_72Dt & 1 other INTERGENIC
X	3263170	X_3263170_SNP [dm3] X_3369137_SNP [dm6]	T	A	2.631e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
3R	22985605	3R_22985605_SNP [dm3] 3R_27159883_SNP [dm6]	T	C	2.632e^-4	0.821	DOWNSTREAM grass INTERGENIC
3R	9170577	3R_9170577_SNP [dm3] 3R_13344855_SNP [dm6]	A	C	2.634e^-4	0.821	UTR_3_PRIME PK2-R1
2L	9986368	2L_9986368_SNP [dm3] 2L_9986368_SNP [dm6]	A	C	2.635e^-4	0.821	INTRON bib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	10013496	3R_10013496_SNP [dm3] 3R_14187774_SNP [dm6]	T	A	2.636e^-4	0.821	INTRON Dop1R1
2L	5169652	2L_5169652_DEL [dm3] 2L_5169652_DEL [dm6]	TATC	T	2.636e^-4	0.821	CODON_DELETION Msp300 INTRON Msp300
3R	26700144	3R_26700144_SNP [dm3] 3R_30874422_SNP [dm6]	T	A	2.649e^-4	0.821	UTR_3_PRIME CG15546	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2047462	2L_2047462_SNP [dm3] 2L_2047462_SNP [dm6]	A	G	2.652e^-4	0.821	NON_SYNONYMOUS_CODING Kebab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	4924604	3R_4924604_SNP [dm3] 3R_9098882_SNP [dm6]	T	G	2.653e^-4	0.821	INTRON pum
3L	14447744	3L_14447744_SNP [dm3] 3L_14454644_SNP [dm6]	G	A	2.654e^-4	0.821	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15329008	2R_15329008_SNP [dm3] 2R_19441503_SNP [dm6]	G	C	2.655e^-4	0.821	SYNONYMOUS_CODING Spt5 UPSTREAM RpL11	TF binding site mE1_TFBS_sens
3R	21760215	3R_21760215_SNP [dm3] 3R_25934493_SNP [dm6]	G	C	2.655e^-4	0.821	INTRON CCAP-R
3L	19081986	3L_19081986_SNP [dm3] 3L_19088886_SNP [dm6]	T	A	2.659e^-4	0.821	INTERGENIC
3L	16929539	3L_16929539_INS [dm3] 3L_16936439_INS [dm6]	A	AAA	2.663e^-4	0.821	UPSTREAM CG11905 INTERGENIC
X	1783154	X_1783154_SNP [dm3] X_1889121_SNP [dm6]	A	C	2.665e^-4	0.821	NON_SYNONYMOUS_CODING trr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	5325603	3R_5325603_SNP [dm3] 3R_9499881_SNP [dm6]	G	T	2.673e^-4	0.821	INTRON RhoL
3L	4609298	3L_4609298_SNP [dm3] 3L_4609298_SNP [dm6]	A	G	2.679e^-4	0.821	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26568251	3R_26568251_SNP [dm3] 3R_30742529_SNP [dm6]	C	T	2.686e^-4	0.821	UPSTREAM CG15543 INTERGENIC
2R	17300865	2R_17300865_SNP [dm3] 2R_21413360_SNP [dm6]	T	G	2.692e^-4	0.821	INTRON Sdc
2L	1095175	2L_1095175_SNP [dm3] 2L_1095175_SNP [dm6]	T	C	2.693e^-4	0.821	INTRON CG4629
3R	8224594	3R_8224594_SNP [dm3] 3R_12398872_SNP [dm6]	G	A	2.700e^-4	0.821	DOWNSTREAM lig3 INTRON CG34402 EXON Cyp9f3Psi
3L	9595047	3L_9595047_SNP [dm3] 3L_9601947_SNP [dm6]	C	A	2.700e^-4	0.821	SYNONYMOUS_CODING CG3306 UPSTREAM CG3088
3L	9257243	3L_9257243_INS [dm3] 3L_9264143_INS [dm6]	T	TT	2.701e^-4	0.821	INTRON GluRIB
2L	5670409	2L_5670409_SNP [dm3] 2L_5670409_SNP [dm6]	T	A	2.706e^-4	0.821	SYNONYMOUS_CODING Hsp60C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17420847	2R_17420847_SNP [dm3] 2R_21533342_SNP [dm6]	T	C	2.707e^-4	0.821	INTRON Egfr
2R	12875536	2R_12875536_SNP [dm3] 2R_16988031_SNP [dm6]	A	G	2.709e^-4	0.821	INTRON Cbp53E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16243931	2R_16243931_SNP [dm3] 2R_20356426_SNP [dm6]	A	T	2.712e^-4	0.821	INTERGENIC
3L	20568975	3L_20568975_SNP [dm3] 3L_20575875_SNP [dm6]	G	A	2.713e^-4	0.821	INTERGENIC
3R	23663025	3R_23663025_SNP [dm3] 3R_27837303_SNP [dm6]	A	C	2.714e^-4	0.821	INTRON CG34353
3R	23670265	3R_23670265_SNP [dm3] 3R_27844543_SNP [dm6]	C	T	2.714e^-4	0.821	UPSTREAM Or98P INTRON CG34353
2L	7369516	2L_7369516_SNP [dm3] 2L_7369516_SNP [dm6]	G	A	2.732e^-4	0.821	DOWNSTREAM CR44063 INTRON Wnt10
2R	6814744	2R_6814744_SNP [dm3] 2R_10927239_SNP [dm6]	T	C	2.733e^-4	0.821	INTERGENIC
2L	5610555	2L_5610555_SNP [dm3] 2L_5610555_SNP [dm6]	G	C	2.735e^-4	0.821	INTRON CG14010
X	15211080	X_15211080_SNP [dm3] X_15317047_SNP [dm6]	A	G	2.735e^-4	0.821	NON_SYNONYMOUS_CODING gce EXON CR44961	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	16539606	3L_16539606_SNP [dm3] 3L_16546506_SNP [dm6]	C	G	2.737e^-4	0.821	UPSTREAM CG13033 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	15034536	2R_15034536_SNP [dm3] 2R_19147031_SNP [dm6]	C	G	2.747e^-4	0.821	INTRON ena
3R	20992109	3R_20992109_SNP [dm3] 3R_25166387_SNP [dm6]	A	T	2.751e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6715595	2L_6715595_SNP [dm3] 2L_6715595_SNP [dm6]	C	A	2.757e^-4	0.821	INTRON AkhR
3L	8927493	3L_8927493_SNP [dm3] 3L_8934393_SNP [dm6]	C	T	2.764e^-4	0.821	INTRON CG43783
3L	3769460	3L_3769460_SNP [dm3] 3L_3769460_SNP [dm6]	T	C	2.770e^-4	0.821	INTRON CG32264
3L	20574920	3L_20574920_SNP [dm3] 3L_20581820_SNP [dm6]	T	A	2.770e^-4	0.821	INTERGENIC
3R	25178678	3R_25178678_SNP [dm3] 3R_29352956_SNP [dm6]	C	T	2.774e^-4	0.821	INTERGENIC
2R	11587710	2R_11587710_SNP [dm3] 2R_15700205_SNP [dm6]	T	G	2.784e^-4	0.821	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080 UPSTREAM CG42662 INTRON CG30080 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9880393	3R_9880393_SNP [dm3] 3R_14054671_SNP [dm6]	T	C	2.785e^-4	0.821	INTERGENIC
3L	18905446	3L_18905446_SNP [dm3] 3L_18912346_SNP [dm6]	C	A	2.798e^-4	0.821	DOWNSTREAM CG14077 INTRON CG14077
3R	2040305	3R_2040305_SNP [dm3] 3R_6214583_SNP [dm6]	C	A	2.811e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	4696780	3L_4696780_SNP [dm3] 3L_4696780_SNP [dm6]	C	T	2.814e^-4	0.821	UPSTREAM CG13713 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	13127933	3L_13127933_SNP [dm3] 3L_13134833_SNP [dm6]	T	G	2.817e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	15940855	2R_15940855_SNP [dm3] 2R_20053350_SNP [dm6]	G	A	2.817e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2R	3633912	2R_3633912_SNP [dm3] 2R_7746407_SNP [dm6]	T	C	2.823e^-4	0.821	INTRON CG30497 & 1 other	TF binding site BDTNP1_TFBS_z
2R	3633916	2R_3633916_SNP [dm3] 2R_7746411_SNP [dm6]	T	A	2.823e^-4	0.821	INTRON CG30497 & 1 other	TF binding site BDTNP1_TFBS_z
2R	18985649	2R_18985649_SNP [dm3] 2R_23098126_SNP [dm6]	C	T	2.826e^-4	0.821	INTERGENIC
3R	22720215	3R_22720215_SNP [dm3] 3R_26894493_SNP [dm6]	G	A	2.829e^-4	0.821	INTRON T48	regulatory region REDfly_CRMs
3R	9916064	3R_9916064_INS [dm3] 3R_14090342_INS [dm6]	T	TCATTTTTGTGT...	2.832e^-4	0.821	UPSTREAM Npc2b INTRON Npc2b
3L	13083549	3L_13083549_SNP [dm3] 3L_13090449_SNP [dm6]	T	C	2.833e^-4	0.821	UPSTREAM CG11251 INTERGENIC
3R	25879412	3R_25879412_SNP [dm3] 3R_30053690_SNP [dm6]	C	G	2.835e^-4	0.821	SYNONYMOUS_CODING CG7946	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21344693	X_21344693_SNP [dm3] X_21473666_SNP [dm6]	C	T	2.839e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9902127	3R_9902127_SNP [dm3] 3R_14076405_SNP [dm6]	A	G	2.841e^-4	0.821	INTRON foxo
2L	20951998	2L_20951998_SNP [dm3] 2L_20951998_SNP [dm6]	A	T	2.843e^-4	0.821	INTERGENIC
2R	18636496	2R_18636496_SNP [dm3] 2R_22748991_SNP [dm6]	G	C	2.866e^-4	0.821	INTRON CG42260
2L	4105171	2L_4105171_SNP [dm3] 2L_4105171_SNP [dm6]	G	A	2.873e^-4	0.821	INTRON ed
3R	16616026	3R_16616026_SNP [dm3] 3R_20790304_SNP [dm6]	G	A	2.879e^-4	0.821	SYNONYMOUS_CODING Syp INTRON Syp
2R	16444370	2R_16444370_SNP [dm3] 2R_20556865_SNP [dm6]	C	T	2.886e^-4	0.821	UPSTREAM lms INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13258474	3L_13258474_SNP [dm3] 3L_13265374_SNP [dm6]	G	A	2.902e^-4	0.821	UTR_5_PRIME caps INTRON caps
2R	11851404	2R_11851404_SNP [dm3] 2R_15963899_SNP [dm6]	G	C	2.908e^-4	0.821	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3L	4632005	3L_4632005_SNP [dm3] 3L_4632005_SNP [dm6]	A	T	2.912e^-4	0.821	INTRON axo
2L	3433452	2L_3433452_INS [dm3] 2L_3433452_INS [dm6]	T	TT	2.914e^-4	0.821	INTERGENIC
X	11907525	X_11907525_SNP [dm3] X_12013492_SNP [dm6]	A	G	2.916e^-4	0.821	UPSTREAM regucalcin INTRON regucalcin
2L	13694421	2L_13694421_DEL [dm3] 2L_13694421_DEL [dm6]	TGTCTAGCT	T	2.918e^-4	0.821	INTRON CG31814
X	12057984	X_12057984_SNP [dm3] X_12163951_SNP [dm6]	A	T	2.921e^-4	0.821	INTRON Ten-a
2R	12853757	2R_12853757_DEL [dm3] 2R_16966252_DEL [dm6]	ATAAA	A	2.924e^-4	0.821	INTERGENIC
3R	14834112	3R_14834112_SNP [dm3] 3R_19008390_SNP [dm6]	T	A	2.925e^-4	0.821	INTRON gukh	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	11907531	X_11907531_INS [dm3] X_12013498_INS [dm6]	A	AA	2.926e^-4	0.821	UPSTREAM regucalcin INTRON regucalcin
3L	4190870	3L_4190870_SNP [dm3] 3L_4190870_SNP [dm6]	G	A	2.927e^-4	0.821	SYNONYMOUS_CODING tipE INTRON CG18675	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7490336	2L_7490336_SNP [dm3] 2L_7490336_SNP [dm6]	C	T	2.930e^-4	0.821	INTRON Ziz
X	2901963	X_2901963_SNP [dm3] X_3007930_SNP [dm6]	T	A	2.934e^-4	0.821	INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	3664333	3L_3664333_SNP [dm3] 3L_3664333_SNP [dm6]	G	T	2.935e^-4	0.821	INTERGENIC
3R	23822177	3R_23822177_SNP [dm3] 3R_27996455_SNP [dm6]	G	T	2.937e^-4	0.821	INTERGENIC
2R	6918248	2R_6918248_SNP [dm3] 2R_11030743_SNP [dm6]	G	A	2.942e^-4	0.821	INTRON luna
X	16914723	X_16914723_SNP [dm3] X_17020690_SNP [dm6]	G	C	2.946e^-4	0.821	INTRON CG45002
2R	14682526	2R_14682526_SNP [dm3] 2R_18795021_SNP [dm6]	G	A	2.951e^-4	0.821	DOWNSTREAM CG15080 INTRON MFS15
X	19452207	X_19452207_SNP [dm3] X_19558174_SNP [dm6]	C	T	2.956e^-4	0.821	UPSTREAM mir-4966 & 3 others INTERGENIC
3R	7968923	3R_7968923_SNP [dm3] 3R_12143201_SNP [dm6]	T	C	2.960e^-4	0.821	INTRON dpr15
3L	3709946	3L_3709946_SNP [dm3] 3L_3709946_SNP [dm6]	T	G	2.964e^-4	0.821	DOWNSTREAM CR45675 INTERGENIC
2R	17652433	2R_17652433_SNP [dm3] 2R_21764928_SNP [dm6]	G	T	2.968e^-4	0.821	UPSTREAM CR43983 & 1 other DOWNSTREAM CR43984 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13083521	3L_13083521_INS [dm3] 3L_13090421_INS [dm6]	T	TTGGGGGCGT	2.978e^-4	0.821	UPSTREAM CG11251 INTERGENIC
2L	12132543	2L_12132543_SNP [dm3] 2L_12132543_SNP [dm6]	C	T	2.980e^-4	0.821	INTRON rho-6
2R	14637040	2R_14637040_DEL [dm3] 2R_18749535_DEL [dm6]	GG	G	2.987e^-4	0.821	INTRON Hs3st-A
2L	5083835	2L_5083835_SNP [dm3] 2L_5083835_SNP [dm6]	G	A	3.001e^-4	0.821	INTRON pgant5
3L	9635481	3L_9635481_SNP [dm3] 3L_9642381_SNP [dm6]	A	C	3.008e^-4	0.821	DOWNSTREAM CG18180 INTRON fry
X	8330993	X_8330993_SNP [dm3] X_8436960_SNP [dm6]	A	T	3.015e^-4	0.821	UTR_5_PRIME CG12125 UPSTREAM CG1440 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	5138556	3R_5138556_SNP [dm3] 3R_9312834_SNP [dm6]	T	A	3.019e^-4	0.821	INTRON CG8861	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16777836	X_16777836_SNP [dm3] X_16883803_SNP [dm6]	G	T	3.022e^-4	0.821	SYNONYMOUS_CODING CG9104 UPSTREAM Rcp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17624927	3L_17624927_SNP [dm3] 3L_17631827_SNP [dm6]	T	A	3.026e^-4	0.821	DOWNSTREAM CG7510 EXON CR44566
3L	5202180	3L_5202180_DEL [dm3] 3L_5209080_DEL [dm6]	TA	T	3.026e^-4	0.821	INTRON shep
2L	7970074	2L_7970074_SNP [dm3] 2L_7970074_SNP [dm6]	A	T	3.027e^-4	0.821	INTRON Snoo
3R	26117499	3R_26117499_SNP [dm3] 3R_30291777_SNP [dm6]	G	A	3.031e^-4	0.821	INTRON hdc
3L	8046136	3L_8046136_SNP [dm3] 3L_8053036_SNP [dm6]	T	G	3.038e^-4	0.821	UTR_3_PRIME nmo DOWNSTREAM nmo
3R	23663001	3R_23663001_DEL [dm3] 3R_27837279_DEL [dm6]	GCTATCCG	G	3.042e^-4	0.821	INTRON CG34353
2L	5666075	2L_5666075_SNP [dm3] 2L_5666075_SNP [dm6]	G	A	3.046e^-4	0.821	INTRON Hsp60C
X	18075906	X_18075906_SNP [dm3] X_18181873_SNP [dm6]	C	T	3.052e^-4	0.821	INTRON Frq2
2L	5885798	2L_5885798_SNP [dm3] 2L_5885798_SNP [dm6]	T	C	3.052e^-4	0.821	UPSTREAM CG9029 DOWNSTREAM CG43185 INTERGENIC	TF binding site mE1_TFBS_cad
X	5351321	X_5351321_SNP [dm3] X_5457288_SNP [dm6]	C	A	3.074e^-4	0.821	INTRON SPR
3R	26923515	3R_26923515_DEL [dm3] 3R_31097793_DEL [dm6]	CT	C	3.076e^-4	0.821	UPSTREAM CG11317 INTERGENIC
2L	5676093	2L_5676093_SNP [dm3] 2L_5676093_SNP [dm6]	A	G	3.087e^-4	0.821	INTERGENIC
3L	4908087	3L_4908087_SNP [dm3] 3L_4908087_SNP [dm6]	T	C	3.089e^-4	0.821	INTERGENIC
3L	10831386	3L_10831386_DEL [dm3] 3L_10838286_DEL [dm6]	TGAT	T	3.092e^-4	0.821	INTERGENIC	enhancer mE1_CBP_Enhancers
3R	4948178	3R_4948178_SNP [dm3] 3R_9122456_SNP [dm6]	A	G	3.098e^-4	0.821	INTRON pum
3R	24428597	3R_24428597_SNP [dm3] 3R_28602875_SNP [dm6]	T	A	3.103e^-4	0.821	SYNONYMOUS_CODING Hrb98DE UPSTREAM snoRNA:Psi28S-3305c DOWNSTREAM snoRNA:Psi28S-3405b & 3 others
X	17861926	X_17861926_SNP [dm3] X_17967893_SNP [dm6]	T	C	3.106e^-4	0.821	UPSTREAM Sh INTRON Sh
2L	14094423	2L_14094423_SNP [dm3] 2L_14094423_SNP [dm6]	T	A	3.108e^-4	0.821	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	13863269	2L_13863269_SNP [dm3] 2L_13863269_SNP [dm6]	G	C	3.110e^-4	0.821	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	21325126	X_21325126_SNP [dm3] X_21454099_SNP [dm6]	A	C	3.110e^-4	0.821	INTRON CG42343
3R	19148882	3R_19148882_SNP [dm3] 3R_23323160_SNP [dm6]	G	A	3.111e^-4	0.821	INTRON pnt
2R	18142511	2R_18142511_SNP [dm3] 2R_22255006_SNP [dm6]	C	G	3.118e^-4	0.821	INTRON dve	TF binding site mE1_TFBS_chinmo
2R	19317387	2R_19317387_SNP [dm3] 2R_23429864_SNP [dm6]	T	A	3.121e^-4	0.821	INTRON CG9815
3L	377225	3L_377225_SNP [dm3] 3L_377225_SNP [dm6]	G	C	3.125e^-4	0.821	START_GAINED trh UTR_5_PRIME trh INTRON trh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	7153758	2L_7153758_SNP [dm3] 2L_7153758_SNP [dm6]	A	C	3.137e^-4	0.821	INTRON Pvf3
3R	20584390	3R_20584390_SNP [dm3] 3R_24758668_SNP [dm6]	A	G	3.138e^-4	0.821	SYNONYMOUS_CODING asp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17457206	3L_17457206_SNP [dm3] 3L_17464106_SNP [dm6]	G	C	3.138e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	6436686	2R_6436686_INS [dm3] 2R_10549181_INS [dm6]	A	AT	3.148e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17076205	2R_17076205_SNP [dm3] 2R_21188700_SNP [dm6]	C	T	3.149e^-4	0.821	SYNONYMOUS_CODING tud
2L	13757213	2L_13757213_SNP [dm3] 2L_13757213_SNP [dm6]	G	A	3.152e^-4	0.821	DOWNSTREAM CR44846 INTRON TM9SF4
3R	4921354	3R_4921354_SNP [dm3] 3R_9095632_SNP [dm6]	T	G	3.156e^-4	0.821	INTRON pum
2R	19403306	2R_19403306_SNP [dm3] 2R_23515783_SNP [dm6]	C	A	3.172e^-4	0.821	INTERGENIC
X	11181864	X_11181864_SNP [dm3] X_11287831_SNP [dm6]	T	A	3.175e^-4	0.821	INTRON CG44422
3R	4138989	3R_4138989_INS [dm3] 3R_8313267_INS [dm6]	A	AG	3.176e^-4	0.821	UTR_5_PRIME eIF4AIII DOWNSTREAM CG11698	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	23661954	3R_23661954_SNP [dm3] 3R_27836232_SNP [dm6]	C	T	3.185e^-4	0.821	INTRON CG34353
3L	6154077	3L_6154077_SNP [dm3] 3L_6160977_SNP [dm6]	G	T	3.187e^-4	0.821	NON_SYNONYMOUS_CODING Cpr65Az
2L	3565786	2L_3565786_SNP [dm3] 2L_3565786_SNP [dm6]	T	C	3.201e^-4	0.821	INTERGENIC
2L	5665969	2L_5665969_SNP [dm3] 2L_5665969_SNP [dm6]	G	A	3.203e^-4	0.821	INTRON Hsp60C
2R	14682440	2R_14682440_SNP [dm3] 2R_18794935_SNP [dm6]	A	G	3.208e^-4	0.821	SYNONYMOUS_CODING MFS15 DOWNSTREAM CG15080
2L	2424716	2L_2424716_SNP [dm3] 2L_2424716_SNP [dm6]	A	C	3.209e^-4	0.821	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
3L	2370628	3L_2370628_SNP [dm3] 3L_2370628_SNP [dm6]	G	A	3.211e^-4	0.821	SYNONYMOUS_CODING CG1317	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15940863	2R_15940863_SNP [dm3] 2R_20053358_SNP [dm6]	T	C	3.212e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3L	14504066	3L_14504066_SNP [dm3] 3L_14510966_SNP [dm6]	C	T	3.222e^-4	0.821	SYNONYMOUS_CODING bbg UPSTREAM bbg
2R	17353598	2R_17353598_SNP [dm3] 2R_21466093_SNP [dm6]	G	C	3.223e^-4	0.821	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19772604	3L_19772604_SNP [dm3] 3L_19779504_SNP [dm6]	G	A	3.235e^-4	0.821	INTRON CG42637 & 1 other
3L	812536	3L_812536_SNP [dm3] 3L_812536_SNP [dm6]	G	T	3.238e^-4	0.821	UPSTREAM CR44537 INTERGENIC
3L	8011083	3L_8011083_SNP [dm3] 3L_8017983_SNP [dm6]	A	T	3.244e^-4	0.821	INTRON nmo
3R	17108491	3R_17108491_SNP [dm3] 3R_21282769_SNP [dm6]	T	C	3.244e^-4	0.821	UPSTREAM CG17298 INTRON SIFaR
2L	6715603	2L_6715603_SNP [dm3] 2L_6715603_SNP [dm6]	T	A	3.244e^-4	0.821	INTRON AkhR
3R	23657781	3R_23657781_SNP [dm3] 3R_27832059_SNP [dm6]	C	T	3.247e^-4	0.821	INTRON CG34353
2R	12501790	2R_12501790_SNP [dm3] 2R_16614285_SNP [dm6]	G	A	3.248e^-4	0.821	INTRON CG5065
2R	8857092	2R_8857092_SNP [dm3] 2R_12969587_SNP [dm6]	A	C	3.252e^-4	0.821	SYNONYMOUS_CODING Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10283462	X_10283462_SNP [dm3] X_10389429_SNP [dm6]	C	A	3.253e^-4	0.821	INTRON flw
X	19374073	X_19374073_SNP [dm3] X_19480040_SNP [dm6]	T	A	3.256e^-4	0.821	UTR_5_PRIME mRpS14 & 1 other UPSTREAM Nat1 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
X	3263231	X_3263231_DEL [dm3] X_3369198_DEL [dm6]	CTGGGGAGGC	C	3.259e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
3R	5116896	3R_5116896_SNP [dm3] 3R_9291174_SNP [dm6]	C	T	3.268e^-4	0.821	INTERGENIC
3L	5672900	3L_5672900_SNP [dm3] 3L_5679800_SNP [dm6]	T	A	3.285e^-4	0.821	INTRON sif
3R	10138734	3R_10138734_SNP [dm3] 3R_14313012_SNP [dm6]	A	G	3.289e^-4	0.821	SYNONYMOUS_CODING CG31321
2L	2462414	2L_2462414_SNP [dm3] 2L_2462414_SNP [dm6]	C	T	3.291e^-4	0.821	UPSTREAM tRNA:Y1:22Fa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7369171	2L_7369171_SNP [dm3] 2L_7369171_SNP [dm6]	A	G	3.295e^-4	0.821	DOWNSTREAM CR44063 INTRON Wnt10
3R	22754257	3R_22754257_DEL [dm3] 3R_26928535_DEL [dm6]	AA	A	3.299e^-4	0.821	INTRON sda
2R	6800691	2R_6800691_DEL [dm3] 2R_10913186_DEL [dm6]	GGTATG	G	3.307e^-4	0.821	INTERGENIC
X	19756524	X_19756524_SNP [dm3] X_19862491_SNP [dm6]	C	G	3.317e^-4	0.821	NON_SYNONYMOUS_CODING CG15618 UTR_3_PRIME CG15618	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	13764405	X_13764405_SNP [dm3] X_13870372_SNP [dm6]	G	A	3.317e^-4	0.821	SYNONYMOUS_CODING mamo INTRON mamo
X	16780142	X_16780142_SNP [dm3] X_16886109_SNP [dm6]	G	A	3.327e^-4	0.821	SYNONYMOUS_CODING CG9099 UPSTREAM CG4880 DOWNSTREAM Rcp INTRON Rcp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	13603047	2L_13603047_SNP [dm3] 2L_13603047_SNP [dm6]	A	T	3.328e^-4	0.821	INTRON kuz
3L	12566141	3L_12566141_SNP [dm3] 3L_12573041_SNP [dm6]	C	A	3.341e^-4	0.821	UPSTREAM sowah INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9013173	2L_9013173_SNP [dm3] 2L_9013173_SNP [dm6]	C	G	3.343e^-4	0.821	SYNONYMOUS_CODING Rcd-1r UTR_3_PRIME CG13102 DOWNSTREAM CG13102	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6777025	2L_6777025_SNP [dm3] 2L_6777025_SNP [dm6]	T	C	3.344e^-4	0.821	SYNONYMOUS_CODING CG17378	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	661787	3L_661787_SNP [dm3] 3L_661787_SNP [dm6]	G	A	3.345e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	6634768	2R_6634768_SNP [dm3] 2R_10747263_SNP [dm6]	T	C	3.345e^-4	0.821	INTRON CG33144
3R	10017190	3R_10017190_SNP [dm3] 3R_14191468_SNP [dm6]	G	C	3.352e^-4	0.821	INTRON Dop1R1
3R	10622706	3R_10622706_SNP [dm3] 3R_14796984_SNP [dm6]	A	C	3.352e^-4	0.821	SYNONYMOUS_CODING CG14855
3R	3783966	3R_3783966_SNP [dm3] 3R_7958244_SNP [dm6]	T	C	3.380e^-4	0.821	INTRON dsx
3L	4908047	3L_4908047_SNP [dm3] 3L_4908047_SNP [dm6]	A	C	3.395e^-4	0.821	INTERGENIC
3L	1736445	3L_1736445_SNP [dm3] 3L_1736445_SNP [dm6]	C	T	3.397e^-4	0.821	NON_SYNONYMOUS_CODING CG18173 UPSTREAM Oseg4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22312916	3R_22312916_SNP [dm3] 3R_26487194_SNP [dm6]	A	G	3.398e^-4	0.821	INTRON plum	TF binding site mE1_TFBS_inv
2R	20060982	2R_20060982_SNP [dm3] 2R_24173459_SNP [dm6]	C	T	3.398e^-4	0.821	UTR_3_PRIME CG3328 DOWNSTREAM mRpS17	TF binding site mE1_TFBS_chinmo
3L	9260810	3L_9260810_SNP [dm3] 3L_9267710_SNP [dm6]	C	A	3.408e^-4	0.821	INTRON GluRIB
2R	16240590	2R_16240590_SNP [dm3] 2R_20353085_SNP [dm6]	T	A	3.410e^-4	0.821	INTERGENIC
2R	16634191	2R_16634191_SNP [dm3] 2R_20746686_SNP [dm6]	T	C	3.412e^-4	0.821	INTRON dpr
3R	14741990	3R_14741990_SNP [dm3] 3R_18916268_SNP [dm6]	A	G	3.412e^-4	0.821	INTRON Xrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc
X	8204825	X_8204825_SNP [dm3] X_8310792_SNP [dm6]	C	A	3.415e^-4	0.821	INTRON nAChRalpha3
3R	8074661	3R_8074661_SNP [dm3] 3R_12248939_SNP [dm6]	T	C	3.417e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	19316692	2R_19316692_SNP [dm3] 2R_23429169_SNP [dm6]	G	A	3.422e^-4	0.821	INTRON CG9815
X	17895535	X_17895535_SNP [dm3] X_18001502_SNP [dm6]	T	G	3.428e^-4	0.821	INTRON Sh
2L	7365474	2L_7365474_INS [dm3] 2L_7365474_INS [dm6]	A	ACAAACAAAGGTGTTCCTAT...	3.432e^-4	0.821	INTRON Wnt10
X	17524499	X_17524499_SNP [dm3] X_17630466_SNP [dm6]	T	G	3.434e^-4	0.821	NON_SYNONYMOUS_CODING CG8316 UPSTREAM CG8326	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18075903	X_18075903_SNP [dm3] X_18181870_SNP [dm6]	A	C	3.436e^-4	0.821	INTRON Frq2
3R	9451755	3R_9451755_DEL [dm3] 3R_13626033_DEL [dm6]	AA	A	3.438e^-4	0.821	INTERGENIC
3L	4908050	3L_4908050_SNP [dm3] 3L_4908050_SNP [dm6]	A	C	3.444e^-4	0.821	INTERGENIC
2L	20951928	2L_20951928_SNP [dm3] 2L_20951928_SNP [dm6]	A	C	3.455e^-4	0.821	INTERGENIC
X	11184510	X_11184510_DEL [dm3] X_11290477_DEL [dm6]	ATA	A	3.456e^-4	0.821	INTRON CG44422
2L	6139269	2L_6139269_SNP [dm3] 2L_6139269_SNP [dm6]	A	G	3.458e^-4	0.821	UPSTREAM CG13991 EXON CR44824
3R	9279889	3R_9279889_SNP [dm3] 3R_13454167_SNP [dm6]	A	G	3.458e^-4	0.821	INTRON CG14372
2L	4819302	2L_4819302_SNP [dm3] 2L_4819302_SNP [dm6]	C	T	3.461e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5686831	2L_5686831_SNP [dm3] 2L_5686831_SNP [dm6]	T	C	3.474e^-4	0.821	INTERGENIC
3R	3959745	3R_3959745_SNP [dm3] 3R_8134023_SNP [dm6]	G	T	3.486e^-4	0.821	INTERGENIC
3R	5339493	3R_5339493_SNP [dm3] 3R_9513771_SNP [dm6]	T	C	3.486e^-4	0.821	SYNONYMOUS_CODING Rlb1 UPSTREAM Ras85D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	14832649	2R_14832649_SNP [dm3] 2R_18945144_SNP [dm6]	T	C	3.487e^-4	0.821	INTRON sano
2L	9873831	2L_9873831_SNP [dm3] 2L_9873831_SNP [dm6]	T	A	3.492e^-4	0.821	INTRON nAChRalpha6
3R	9451738	3R_9451738_SNP [dm3] 3R_13626016_SNP [dm6]	T	A	3.492e^-4	0.821	INTERGENIC
2L	2424776	2L_2424776_SNP [dm3] 2L_2424776_SNP [dm6]	A	G	3.495e^-4	0.821	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
3R	23587244	3R_23587244_SNP [dm3] 3R_27761522_SNP [dm6]	G	C	3.496e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4845069	3L_4845069_SNP [dm3] 3L_4845069_SNP [dm6]	A	G	3.496e^-4	0.821	INTERGENIC
2L	4053198	2L_4053198_SNP [dm3] 2L_4053198_SNP [dm6]	C	T	3.507e^-4	0.821	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18452896	X_18452896_SNP [dm3] X_18558863_SNP [dm6]	T	G	3.509e^-4	0.821	INTRON Bx
3L	5277913	3L_5277913_SNP [dm3] 3L_5284813_SNP [dm6]	A	C	3.515e^-4	0.821	INTERGENIC
2R	20126225	2R_20126225_SNP [dm3] 2R_24238702_SNP [dm6]	G	A	3.520e^-4	0.821	UPSTREAM CR44827 INTERGENIC
3L	12372621	3L_12372621_SNP [dm3] 3L_12379521_SNP [dm6]	A	T	3.525e^-4	0.821	UTR_5_PRIME Ncc69	TF binding site BDTNP1_TFBS_twi
2R	16078843	2R_16078843_SNP [dm3] 2R_20191338_SNP [dm6]	G	A	3.526e^-4	0.821	INTERGENIC
3L	4614948	3L_4614948_SNP [dm3] 3L_4614948_SNP [dm6]	C	T	3.528e^-4	0.821	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10220911	3L_10220911_SNP [dm3] 3L_10227811_SNP [dm6]	A	T	3.544e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	13314048	2R_13314048_SNP [dm3] 2R_17426543_SNP [dm6]	G	A	3.548e^-4	0.821	SYNONYMOUS_CODING CG6550 DOWNSTREAM l_2_k01209	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17522943	2L_17522943_SNP [dm3] 2L_17522943_SNP [dm6]	G	A	3.551e^-4	0.821	SYNONYMOUS_CODING CG15143 INTRON Dhc36C	TF binding site mE1_TFBS_sens
3R	15466692	3R_15466692_SNP [dm3] 3R_19640970_SNP [dm6]	G	A	3.557e^-4	0.821	INTRON subdued	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	11046470	2L_11046470_SNP [dm3] 2L_11046470_SNP [dm6]	C	A	3.569e^-4	0.821	INTRON Samuel
2L	3901901	2L_3901901_SNP [dm3] 2L_3901901_SNP [dm6]	T	C	3.576e^-4	0.821	INTRON capu
2L	18466686	2L_18466686_SNP [dm3] 2L_18466686_SNP [dm6]	C	T	3.577e^-4	0.821	INTRON let-7-C
2R	18990462	2R_18990462_SNP [dm3] 2R_23102939_SNP [dm6]	A	G	3.592e^-4	0.821	SYNONYMOUS_CODING Gr59c
2R	2770402	2R_2770402_SNP [dm3] 2R_6882897_SNP [dm6]	T	C	3.594e^-4	0.821	UPSTREAM Spn42Dd INTRON Spn42Dc
3L	2326864	3L_2326864_SNP [dm3] 3L_2326864_SNP [dm6]	G	A	3.597e^-4	0.821	INTRON MsR1
3R	1931081	3R_1931081_SNP [dm3] 3R_6105359_SNP [dm6]	G	A	3.602e^-4	0.821	UPSTREAM CR44929 INTERGENIC	regulatory region REDfly_CRMs
X	18075902	X_18075902_SNP [dm3] X_18181869_SNP [dm6]	G	C	3.608e^-4	0.821	INTRON Frq2
3R	25298809	3R_25298809_SNP [dm3] 3R_29473087_SNP [dm6]	T	A	3.615e^-4	0.821	INTRON Ptp99A
2L	5656278	2L_5656278_SNP [dm3] 2L_5656278_SNP [dm6]	T	C	3.616e^-4	0.821	INTRON CG31646
2L	5885768	2L_5885768_SNP [dm3] 2L_5885768_SNP [dm6]	G	T	3.620e^-4	0.821	UPSTREAM Sfp26Ac & 1 other DOWNSTREAM CG43185 INTERGENIC
2R	11587703	2R_11587703_SNP [dm3] 2R_15700198_SNP [dm6]	C	A	3.624e^-4	0.821	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080 UPSTREAM CG42662 INTRON CG30080 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6494021	2L_6494021_SNP [dm3] 2L_6494021_SNP [dm6]	C	T	3.642e^-4	0.821	NON_SYNONYMOUS_CODING CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7367965	2L_7367965_SNP [dm3] 2L_7367965_SNP [dm6]	T	A	3.643e^-4	0.821	INTRON Wnt10
3L	4513460	3L_4513460_SNP [dm3] 3L_4513460_SNP [dm6]	G	A	3.649e^-4	0.821	SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14297183	3R_14297183_SNP [dm3] 3R_18471461_SNP [dm6]	A	G	3.653e^-4	0.821	INTRON fru
2R	16566342	2R_16566342_SNP [dm3] 2R_20678837_SNP [dm6]	C	T	3.654e^-4	0.821	INTERGENIC
3L	4109804	3L_4109804_DEL [dm3] 3L_4109804_DEL [dm6]	ATATG	A	3.657e^-4	0.821	INTRON Ack	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13738787	3R_13738787_SNP [dm3] 3R_17913065_SNP [dm6]	A	C	3.657e^-4	0.821	INTRON Rim
2R	14832258	2R_14832258_SNP [dm3] 2R_18944753_SNP [dm6]	C	T	3.665e^-4	0.821	INTRON sano
X	19755255	X_19755255_SNP [dm3] X_19861222_SNP [dm6]	G	A	3.672e^-4	0.821	INTRON CG15618	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	26899420	3R_26899420_SNP [dm3] 3R_31073698_SNP [dm6]	G	A	3.677e^-4	0.821	INTRON Sox100B
3L	11776739	3L_11776739_SNP [dm3] 3L_11783639_SNP [dm6]	A	G	3.683e^-4	0.821	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	21348815	X_21348815_SNP [dm3] X_21477788_SNP [dm6]	G	A	3.683e^-4	0.821	SYNONYMOUS_CODING Ir20a
3L	13254964	3L_13254964_SNP [dm3] 3L_13261864_SNP [dm6]	G	C	3.693e^-4	0.821	INTRON caps
3R	23828076	3R_23828076_SNP [dm3] 3R_28002354_SNP [dm6]	T	G	3.696e^-4	0.821	INTERGENIC
3R	8073961	3R_8073961_SNP [dm3] 3R_12248239_SNP [dm6]	G	T	3.698e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	17403357	2L_17403357_SNP [dm3] 2L_17403357_SNP [dm6]	G	T	3.701e^-4	0.821	INTRON CLIP-190
2L	7367987	2L_7367987_SNP [dm3] 2L_7367987_SNP [dm6]	T	A	3.706e^-4	0.821	INTRON Wnt10
2R	7070095	2R_7070095_SNP [dm3] 2R_11182590_SNP [dm6]	A	G	3.721e^-4	0.821	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6781742	2R_6781742_SNP [dm3] 2R_10894237_SNP [dm6]	G	T	3.736e^-4	0.821	UTR_5_PRIME cag UPSTREAM CG12942 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	17684654	2R_17684654_DEL [dm3] 2R_21797149_DEL [dm6]	AA	A	3.738e^-4	0.821	DOWNSTREAM CG34204 & 1 other INTERGENIC
3R	27015908	3R_27015908_SNP [dm3] 3R_31190186_SNP [dm6]	A	T	3.742e^-4	0.821	INTRON mesh
3R	22856194	3R_22856194_SNP [dm3] 3R_27030472_SNP [dm6]	A	C	3.745e^-4	0.821	INTRON RYa-R
3R	20309299	3R_20309299_SNP [dm3] 3R_24483577_SNP [dm6]	T	A	3.746e^-4	0.821	INTERGENIC
3R	17938955	3R_17938955_SNP [dm3] 3R_22113233_SNP [dm6]	C	T	3.752e^-4	0.821	UPSTREAM Ir94a INTERGENIC
3L	12580419	3L_12580419_SNP [dm3] 3L_12587319_SNP [dm6]	T	C	3.760e^-4	0.821	INTRON ara
3L	2372712	3L_2372712_SNP [dm3] 3L_2372712_SNP [dm6]	A	C	3.765e^-4	0.821	SYNONYMOUS_CODING CG8993 UPSTREAM CG1317 DOWNSTREAM mRpL23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	19122488	3R_19122488_INS [dm3] 3R_23296766_INS [dm6]	A	ACATA	3.779e^-4	0.821	INTRON pnt	TF binding site BDTNP1_TFBS_dl
2R	14319262	2R_14319262_DEL [dm3] 2R_18431757_DEL [dm6]	AA	A	3.784e^-4	0.821	INTRON CG30118	TF binding site mE1_TFBS_chinmo
3L	4636071	3L_4636071_SNP [dm3] 3L_4636071_SNP [dm6]	A	G	3.785e^-4	0.821	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
3L	20574893	3L_20574893_SNP [dm3] 3L_20581793_SNP [dm6]	T	C	3.790e^-4	0.821	INTERGENIC
3L	21538772	3L_21538772_SNP [dm3] 3L_21545672_SNP [dm6]	T	A	3.795e^-4	0.821	SYNONYMOUS_CODING Wnk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13347631	2R_13347631_SNP [dm3] 2R_17460126_SNP [dm6]	C	T	3.800e^-4	0.821	UPSTREAM CG14478 INTRON CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9347733	2R_9347733_SNP [dm3] 2R_13460228_SNP [dm6]	T	A	3.806e^-4	0.821	INTRON arr	TF binding site mE1_TFBS_chinmo
2L	19679751	2L_19679751_SNP [dm3] 2L_19679751_SNP [dm6]	C	A	3.808e^-4	0.821	INTRON Lar
3R	23745320	3R_23745320_SNP [dm3] 3R_27919598_SNP [dm6]	A	C	3.811e^-4	0.821	UPSTREAM CG33213 DOWNSTREAM CG12259 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	18624060	3R_18624060_SNP [dm3] 3R_22798338_SNP [dm6]	G	A	3.812e^-4	0.821	INTERGENIC
2L	8549272	2L_8549272_SNP [dm3] 2L_8549272_SNP [dm6]	C	T	3.821e^-4	0.821	INTRON Sema-1a
2R	15940860	2R_15940860_SNP [dm3] 2R_20053355_SNP [dm6]	T	A	3.823e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
X	7329519	X_7329519_SNP [dm3] X_7435486_SNP [dm6]	A	G	3.830e^-4	0.821	INTERGENIC
3R	5812754	3R_5812754_SNP [dm3] 3R_9987032_SNP [dm6]	A	G	3.831e^-4	0.821	SYNONYMOUS_CODING Glut4EF UPSTREAM Art4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1728161	3L_1728161_SNP [dm3] 3L_1728161_SNP [dm6]	C	G	3.831e^-4	0.821	INTRON drpr	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	21896528	3R_21896528_SNP [dm3] 3R_26070806_SNP [dm6]	T	A	3.838e^-4	0.821	EXON CR44950	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9927739	2L_9927739_SNP [dm3] 2L_9927739_SNP [dm6]	G	A	3.842e^-4	0.821	SYNONYMOUS_CODING CG42366	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2326753	3L_2326753_SNP [dm3] 3L_2326753_SNP [dm6]	T	C	3.842e^-4	0.821	INTRON MsR1
2L	6298290	2L_6298290_SNP [dm3] 2L_6298290_SNP [dm6]	A	G	3.847e^-4	0.821	INTRON Ddr
2L	6139374	2L_6139374_SNP [dm3] 2L_6139374_SNP [dm6]	C	A	3.848e^-4	0.821	UPSTREAM CG13991 & 1 other INTERGENIC
3R	8363811	3R_8363811_SNP [dm3] 3R_12538089_SNP [dm6]	G	A	3.862e^-4	0.821	INTRON Octbeta3R
3L	16543412	3L_16543412_SNP [dm3] 3L_16550312_SNP [dm6]	T	A	3.868e^-4	0.821	INTERGENIC
2L	3876513	2L_3876513_INS [dm3] 2L_3876513_INS [dm6]	A	AC	3.877e^-4	0.821	INTRON capu
3L	2628044	3L_2628044_SNP [dm3] 3L_2628044_SNP [dm6]	T	G	3.881e^-4	0.821	INTRON Pxn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	5885779	2L_5885779_SNP [dm3] 2L_5885779_SNP [dm6]	G	A	3.883e^-4	0.821	UPSTREAM CG9029 DOWNSTREAM CG43185 INTERGENIC
3L	11123139	3L_11123139_SNP [dm3] 3L_11130039_SNP [dm6]	G	A	3.884e^-4	0.821	NON_SYNONYMOUS_CODING CG42575 UPSTREAM nol	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2573085	3L_2573085_SNP [dm3] 3L_2573085_SNP [dm6]	C	G	3.885e^-4	0.821	INTRON msn	TF binding site mE1_TFBS_inv
2L	9651786	2L_9651786_SNP [dm3] 2L_9651786_SNP [dm6]	C	T	3.887e^-4	0.821	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_sens
X	4134922	X_4134922_SNP [dm3] X_4240889_SNP [dm6]	A	G	3.889e^-4	0.821	DOWNSTREAM Femcoat INTERGENIC
X	8332813	X_8332813_SNP [dm3] X_8438780_SNP [dm6]	A	T	3.902e^-4	0.821	UTR_5_PRIME CG1440 UPSTREAM CG12125 INTRON CG1440	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8955039	3L_8955039_SNP [dm3] 3L_8961939_SNP [dm6]	T	C	3.904e^-4	0.821	NON_SYNONYMOUS_CODING CG5660
3L	12580429	3L_12580429_SNP [dm3] 3L_12587329_SNP [dm6]	A	T	3.907e^-4	0.821	INTRON ara
2R	17030951	2R_17030951_SNP [dm3] 2R_21143446_SNP [dm6]	A	G	3.915e^-4	0.821	UPSTREAM Xbp1 DOWNSTREAM CG9406 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	23664651	3R_23664651_SNP [dm3] 3R_27838929_SNP [dm6]	T	C	3.917e^-4	0.821	INTRON CG34353
2R	19649909	2R_19649909_SNP [dm3] 2R_23762386_SNP [dm6]	T	C	3.924e^-4	0.821	INTRON CG9850
2L	14585017	2L_14585017_SNP [dm3] 2L_14585017_SNP [dm6]	C	T	3.926e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	9592677	3R_9592677_SNP [dm3] 3R_13766955_SNP [dm6]	C	T	3.928e^-4	0.821	SYNONYMOUS_CODING CG9312 UPSTREAM Cht5
3R	14394897	3R_14394897_SNP [dm3] 3R_18569175_SNP [dm6]	A	T	3.931e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	9666419	2L_9666419_SNP [dm3] 2L_9666419_SNP [dm6]	A	C	3.935e^-4	0.821	INTERGENIC
3L	9744803	3L_9744803_SNP [dm3] 3L_9751703_SNP [dm6]	A	T	3.949e^-4	0.821	UPSTREAM CG42268 INTRON CG42268	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	6773921	2R_6773921_SNP [dm3] 2R_10886416_SNP [dm6]	C	T	3.951e^-4	0.821	UPSTREAM CG30020 DOWNSTREAM mir-1008 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17952835	3R_17952835_SNP [dm3] 3R_22127113_SNP [dm6]	C	A	3.952e^-4	0.821	INTRON CG42390
3L	21883192	3L_21883192_SNP [dm3] 3L_21890092_SNP [dm6]	G	T	3.952e^-4	0.821	INTRON mub	TF binding site mE1_TFBS_Trl
3R	10372475	3R_10372475_SNP [dm3] 3R_14546753_SNP [dm6]	A	T	3.956e^-4	0.821	INTRON Pde6
3R	22983360	3R_22983360_SNP [dm3] 3R_27157638_SNP [dm6]	G	A	3.957e^-4	0.821	UPSTREAM grass DOWNSTREAM Men-b INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	7356141	2L_7356141_SNP [dm3] 2L_7356141_SNP [dm6]	G	C	3.957e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	20108638	2R_20108638_SNP [dm3] 2R_24221115_SNP [dm6]	C	T	3.960e^-4	0.821	INTRON CG30419
X	16928557	X_16928557_SNP [dm3] X_17034524_SNP [dm6]	T	C	3.962e^-4	0.821	INTRON CG45002
X	18453479	X_18453479_SNP [dm3] X_18559446_SNP [dm6]	A	C	3.962e^-4	0.821	INTRON Bx
3R	14803757	3R_14803757_SNP [dm3] 3R_18978035_SNP [dm6]	A	T	3.964e^-4	0.821	UTR_3_PRIME CG42613 DOWNSTREAM CG12269 & 1 other
X	10312484	X_10312484_SNP [dm3] X_10418451_SNP [dm6]	A	T	3.969e^-4	0.821	DOWNSTREAM RabX2 INTRON CG32683
X	19283485	X_19283485_SNP [dm3] X_19389452_SNP [dm6]	G	T	3.970e^-4	0.821	INTRON kek5
3R	6739065	3R_6739065_SNP [dm3] 3R_10913343_SNP [dm6]	G	T	3.972e^-4	0.821	INTERGENIC
2L	18530670	2L_18530670_SNP [dm3] 2L_18530670_SNP [dm6]	C	T	3.978e^-4	0.821	INTRON CG10211
X	21348785	X_21348785_SNP [dm3] X_21477758_SNP [dm6]	A	T	3.985e^-4	0.821	NON_SYNONYMOUS_CODING Ir20a
X	1043573	X_1043573_SNP [dm3] X_1149540_SNP [dm6]	T	C	3.988e^-4	0.821	INTERGENIC
3L	899757	3L_899757_SNP [dm3] 3L_899757_SNP [dm6]	T	C	3.993e^-4	0.821	DOWNSTREAM CG34057 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3558298	3L_3558298_SNP [dm3] 3L_3558298_SNP [dm6]	G	C	3.999e^-4	0.821	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	9814552	X_9814552_SNP [dm3] X_9920519_SNP [dm6]	T	A	4.004e^-4	0.821	INTERGENIC
3L	16929487	3L_16929487_SNP [dm3] 3L_16936387_SNP [dm6]	G	C	4.006e^-4	0.821	UPSTREAM CG11905 INTERGENIC
3L	3926122	3L_3926122_DEL [dm3] 3L_3926122_DEL [dm6]	ATA	A	4.010e^-4	0.821	UPSTREAM Eip63F-1 INTRON Eip63F-1
3R	23828651	3R_23828651_SNP [dm3] 3R_28002929_SNP [dm6]	C	T	4.029e^-4	0.821	INTERGENIC
3R	23339078	3R_23339078_SNP [dm3] 3R_27513356_SNP [dm6]	T	C	4.032e^-4	0.821	INTERGENIC
3L	12580396	3L_12580396_DEL [dm3] 3L_12587296_DEL [dm6]	AT	A	4.041e^-4	0.821	INTRON ara
X	18975610	X_18975610_SNP [dm3] X_19081577_SNP [dm6]	T	A	4.050e^-4	0.821	UPSTREAM CG14191 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	20308758	3R_20308758_SNP [dm3] 3R_24483036_SNP [dm6]	A	T	4.052e^-4	0.821	INTERGENIC
2L	4043112	2L_4043112_SNP [dm3] 2L_4043112_SNP [dm6]	A	C	4.053e^-4	0.821	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2370268	3L_2370268_SNP [dm3] 3L_2370268_SNP [dm6]	C	A	4.054e^-4	0.821	SYNONYMOUS_CODING CG1317	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1736501	3L_1736501_SNP [dm3] 3L_1736501_SNP [dm6]	C	A	4.056e^-4	0.821	SYNONYMOUS_CODING CG18173 UPSTREAM Oseg4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	11342835	X_11342835_INS [dm3] X_11448802_INS [dm6]	G	GGG	4.056e^-4	0.821	INTRON Evi5	TF binding site BDTNP1_TFBS_dl
2L	5169728	2L_5169728_SNP [dm3] 2L_5169728_SNP [dm6]	T	A	4.059e^-4	0.821	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	13024031	3L_13024031_SNP [dm3] 3L_13030931_SNP [dm6]	G	A	4.084e^-4	0.821	INTRON CG17672	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	3709878	3L_3709878_SNP [dm3] 3L_3709878_SNP [dm6]	G	A	4.085e^-4	0.821	DOWNSTREAM CR45675 INTERGENIC
X	1042632	X_1042632_SNP [dm3] X_1148599_SNP [dm6]	G	T	4.086e^-4	0.821	INTERGENIC
3L	15900560	3L_15900560_SNP [dm3] 3L_15907460_SNP [dm6]	C	T	4.096e^-4	0.821	INTRON sff
3R	7334913	3R_7334913_SNP [dm3] 3R_11509191_SNP [dm6]	C	T	4.099e^-4	0.821	INTERGENIC
X	18075897	X_18075897_SNP [dm3] X_18181864_SNP [dm6]	T	A	4.109e^-4	0.821	INTRON Frq2
3R	9986800	3R_9986800_SNP [dm3] 3R_14161078_SNP [dm6]	A	T	4.110e^-4	0.821	UPSTREAM CG31327 INTERGENIC
2L	17568364	2L_17568364_SNP [dm3] 2L_17568364_SNP [dm6]	C	A	4.113e^-4	0.821	INTERGENIC
3L	4609299	3L_4609299_SNP [dm3] 3L_4609299_SNP [dm6]	A	G	4.117e^-4	0.821	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5563717	2L_5563717_SNP [dm3] 2L_5563717_SNP [dm6]	G	C	4.117e^-4	0.821	DOWNSTREAM GluRIIB INTERGENIC
2R	12507616	2R_12507616_SNP [dm3] 2R_16620111_SNP [dm6]	T	C	4.117e^-4	0.821	INTRON CG5065
2L	1098678	2L_1098678_SNP [dm3] 2L_1098678_SNP [dm6]	G	A	4.129e^-4	0.821	INTRON CG4629
2R	5948283	2R_5948283_SNP [dm3] 2R_10060778_SNP [dm6]	G	A	4.130e^-4	0.821	SYNONYMOUS_CODING magu
2R	17353848	2R_17353848_SNP [dm3] 2R_21466343_SNP [dm6]	A	C	4.132e^-4	0.821	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17428586	X_17428586_SNP [dm3] X_17534553_SNP [dm6]	C	G	4.137e^-4	0.821	SYNONYMOUS_CODING CG43658	TF binding site mE1_TFBS_chinmo
2L	2424778	2L_2424778_SNP [dm3] 2L_2424778_SNP [dm6]	A	G	4.149e^-4	0.821	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
2R	8854863	2R_8854863_SNP [dm3] 2R_12967358_SNP [dm6]	G	A	4.151e^-4	0.821	SYNONYMOUS_CODING Psc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16617330	X_16617330_SNP [dm3] X_16723297_SNP [dm6]	A	T	4.154e^-4	0.821	INTRON CG32572	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23477390	3R_23477390_SNP [dm3] 3R_27651668_SNP [dm6]	T	C	4.157e^-4	0.821	UPSTREAM tau INTRON tau	TF binding site mE1_TFBS_bab1
2L	5675944	2L_5675944_SNP [dm3] 2L_5675944_SNP [dm6]	C	T	4.159e^-4	0.821	INTERGENIC
2L	9451591	2L_9451591_SNP [dm3] 2L_9451591_SNP [dm6]	T	C	4.162e^-4	0.821	INTRON numb
3R	13375947	3R_13375947_SNP [dm3] 3R_17550225_SNP [dm6]	A	C	4.162e^-4	0.821	INTERGENIC
2L	5670355	2L_5670355_SNP [dm3] 2L_5670355_SNP [dm6]	A	T	4.164e^-4	0.821	SYNONYMOUS_CODING Hsp60C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12877479	2R_12877479_SNP [dm3] 2R_16989974_SNP [dm6]	G	C	4.165e^-4	0.821	INTRON Cbp53E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3263042	X_3263042_SNP [dm3] X_3369009_SNP [dm6]	A	T	4.176e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
X	3263044	X_3263044_SNP [dm3] X_3369011_SNP [dm6]	C	T	4.176e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
3L	15900578	3L_15900578_SNP [dm3] 3L_15907478_SNP [dm6]	C	T	4.182e^-4	0.821	INTRON sff
2R	13132534	2R_13132534_SNP [dm3] 2R_17245029_SNP [dm6]	T	C	4.184e^-4	0.821	DOWNSTREAM CG18469 INTRON mbl
2R	13132539	2R_13132539_SNP [dm3] 2R_17245034_SNP [dm6]	G	T	4.184e^-4	0.821	DOWNSTREAM CG18469 INTRON mbl
2L	17568357	2L_17568357_SNP [dm3] 2L_17568357_SNP [dm6]	C	T	4.197e^-4	0.821	INTERGENIC
2L	7490284	2L_7490284_SNP [dm3] 2L_7490284_SNP [dm6]	T	A	4.198e^-4	0.821	INTRON Ziz
3R	20343783	3R_20343783_INS [dm3] 3R_24518061_INS [dm6]	A	ATAAACTCAATA...	4.199e^-4	0.821	UTR_3_PRIME CG13617 UPSTREAM Pp1alpha-96A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14458675	X_14458675_INS [dm3] X_14564642_INS [dm6]	A	AATATATATATATTA...	4.200e^-4	0.821	INTERGENIC
3L	12934145	3L_12934145_DEL [dm3] 3L_12941045_DEL [dm6]	TTTA	T	4.214e^-4	0.821	INTERGENIC
2R	7446797	2R_7446797_SNP [dm3] 2R_11559292_SNP [dm6]	A	G	4.216e^-4	0.821	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	12113258	X_12113258_SNP [dm3] X_12219225_SNP [dm6]	G	T	4.218e^-4	0.821	INTRON Ten-a	TF binding site mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
2L	5670328	2L_5670328_SNP [dm3] 2L_5670328_SNP [dm6]	T	C	4.230e^-4	0.821	SYNONYMOUS_CODING Hsp60C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7998254	3R_7998254_SNP [dm3] 3R_12172532_SNP [dm6]	A	G	4.233e^-4	0.821	INTERGENIC
X	12688725	X_12688725_SNP [dm3] X_12794692_SNP [dm6]	T	G	4.235e^-4	0.821	INTRON Pde9
3L	8357795	3L_8357795_SNP [dm3] 3L_8364695_SNP [dm6]	T	G	4.239e^-4	0.821	INTERGENIC
3L	6493990	3L_6493990_SNP [dm3] 3L_6500890_SNP [dm6]	T	A	4.245e^-4	0.821	INTRON sfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2L	6998917	2L_6998917_SNP [dm3] 2L_6998917_SNP [dm6]	G	C	4.246e^-4	0.821	INTRON uif
3R	14141125	3R_14141125_SNP [dm3] 3R_18315403_SNP [dm6]	A	T	4.263e^-4	0.821	UPSTREAM PKD DOWNSTREAM CG31235 INTERGENIC
3L	11150089	3L_11150089_SNP [dm3] 3L_11156989_SNP [dm6]	A	G	4.265e^-4	0.821	INTRON CG32082	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6745720	2R_6745720_SNP [dm3] 2R_10858215_SNP [dm6]	G	T	4.266e^-4	0.821	INTRON CG30015	TF binding site mE1_TFBS_HSA
2R	16240552	2R_16240552_SNP [dm3] 2R_20353047_SNP [dm6]	T	A	4.269e^-4	0.821	INTERGENIC
3R	23663059	3R_23663059_SNP [dm3] 3R_27837337_SNP [dm6]	T	G	4.270e^-4	0.821	INTRON CG34353
3L	21788953	3L_21788953_SNP [dm3] 3L_21795853_SNP [dm6]	G	T	4.277e^-4	0.821	INTERGENIC
3R	17384407	3R_17384407_SNP [dm3] 3R_21558685_SNP [dm6]	C	A	4.281e^-4	0.821	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2R	6211608	2R_6211608_SNP [dm3] 2R_10324103_SNP [dm6]	G	A	4.285e^-4	0.821	INTRON CG42732
3L	16929443	3L_16929443_SNP [dm3] 3L_16936343_SNP [dm6]	A	G	4.287e^-4	0.821	UPSTREAM CG11905 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	18154426	2R_18154426_SNP [dm3] 2R_22266921_SNP [dm6]	C	T	4.289e^-4	0.821	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3263052	X_3263052_SNP [dm3] X_3369019_SNP [dm6]	A	G	4.294e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
X	19755251	X_19755251_SNP [dm3] X_19861218_SNP [dm6]	A	C	4.297e^-4	0.821	INTRON CG15618	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	5542022	2L_5542022_SNP [dm3] 2L_5542022_SNP [dm6]	T	A	4.297e^-4	0.821	UPSTREAM Lam & 1 other INTRON Hel25E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	3768380	3L_3768380_SNP [dm3] 3L_3768380_SNP [dm6]	G	A	4.298e^-4	0.821	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	6914760	2R_6914760_SNP [dm3] 2R_11027255_SNP [dm6]	C	T	4.302e^-4	0.821	INTRON luna
3L	3769571	3L_3769571_SNP [dm3] 3L_3769571_SNP [dm6]	G	A	4.303e^-4	0.821	INTRON CG32264
X	14350351	X_14350351_SNP [dm3] X_14456318_SNP [dm6]	G	T	4.304e^-4	0.821	INTRON dpr8	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	2447270	2L_2447270_SNP [dm3] 2L_2447270_SNP [dm6]	C	T	4.307e^-4	0.821	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
2L	5676218	2L_5676218_SNP [dm3] 2L_5676218_SNP [dm6]	C	T	4.309e^-4	0.821	INTERGENIC
3R	21904146	3R_21904146_SNP [dm3] 3R_26078424_SNP [dm6]	G	A	4.312e^-4	0.821	SYNONYMOUS_CODING dys	TF binding site mE1_TFBS_cad
2L	13341979	2L_13341979_SNP [dm3] 2L_13341979_SNP [dm6]	A	T	4.314e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	3204455	3L_3204455_SNP [dm3] 3L_3204455_SNP [dm6]	T	A	4.318e^-4	0.821	UPSTREAM CG33159 DOWNSTREAM CG32277 INTRON gry	TF binding site mE1_TFBS_cad
3L	4907958	3L_4907958_SNP [dm3] 3L_4907958_SNP [dm6]	A	T	4.318e^-4	0.821	INTERGENIC
2L	5498690	2L_5498690_SNP [dm3] 2L_5498690_SNP [dm6]	A	G	4.333e^-4	0.821	INTERGENIC
3L	8046202	3L_8046202_SNP [dm3] 3L_8053102_SNP [dm6]	A	G	4.340e^-4	0.821	UTR_3_PRIME nmo DOWNSTREAM nmo
X	5955629	X_5955629_SNP [dm3] X_6061596_SNP [dm6]	A	T	4.342e^-4	0.821	INTRON CG5921	TF binding site mE1_TFBS_chinmo
2R	19507262	2R_19507262_SNP [dm3] 2R_23619739_SNP [dm6]	T	A	4.343e^-4	0.821	INTERGENIC
3L	3204480	3L_3204480_SNP [dm3] 3L_3204480_SNP [dm6]	C	T	4.343e^-4	0.821	UPSTREAM CG33159 DOWNSTREAM CG32277 INTRON gry	TF binding site mE1_TFBS_cad
2L	14850057	2L_14850057_SNP [dm3] 2L_14850057_SNP [dm6]	T	C	4.344e^-4	0.821	UPSTREAM CG15279 INTRON CG15279
3R	8091737	3R_8091737_SNP [dm3] 3R_12266015_SNP [dm6]	A	G	4.374e^-4	0.821	INTRON svp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3047984	2L_3047984_SNP [dm3] 2L_3047984_SNP [dm6]	C	A	4.377e^-4	0.821	NON_SYNONYMOUS_CODING v_2_k05816 UPSTREAM snRNA:U5:23D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5357353	3L_5357353_SNP [dm3] 3L_5364253_SNP [dm6]	T	C	4.377e^-4	0.821	INTRON Uev1A
2R	3631014	2R_3631014_SNP [dm3] 2R_7743509_SNP [dm6]	A	T	4.377e^-4	0.821	INTRON CG30497 & 1 other
X	8330858	X_8330858_SNP [dm3] X_8436825_SNP [dm6]	A	G	4.394e^-4	0.821	UTR_5_PRIME CG12125 UPSTREAM CG1440 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	15466691	3R_15466691_SNP [dm3] 3R_19640969_SNP [dm6]	T	C	4.394e^-4	0.821	INTRON subdued	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	21916836	3L_21916836_SNP [dm3] 3L_21923736_SNP [dm6]	A	T	4.406e^-4	0.821	UTR_3_PRIME mub INTRON mub
3R	26998247	3R_26998247_SNP [dm3] 3R_31172525_SNP [dm6]	G	A	4.406e^-4	0.821	INTRON Gycbeta100B
3L	812511	3L_812511_SNP [dm3] 3L_812511_SNP [dm6]	A	G	4.408e^-4	0.821	UPSTREAM CR44537 INTERGENIC
X	3643670	X_3643670_SNP [dm3] X_3749637_SNP [dm6]	G	T	4.410e^-4	0.821	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26131482	3R_26131482_INS [dm3] 3R_30305760_INS [dm6]	C	CC	4.415e^-4	0.821	DOWNSTREAM CG34300 INTRON hdc
2R	7446794	2R_7446794_SNP [dm3] 2R_11559289_SNP [dm6]	A	T	4.419e^-4	0.821	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	3207364	X_3207364_SNP [dm3] X_3313331_SNP [dm6]	T	A	4.424e^-4	0.821	UPSTREAM dnc DOWNSTREAM CR44886 INTRON dnc
2L	10901222	2L_10901222_SNP [dm3] 2L_10901222_SNP [dm6]	C	A	4.430e^-4	0.821	INTRON CG14070
3R	1954109	3R_1954109_SNP [dm3] 3R_6128387_SNP [dm6]	G	A	4.441e^-4	0.821	UPSTREAM CR43487 INTERGENIC
X	14914517	X_14914517_SNP [dm3] X_15020484_SNP [dm6]	G	A	4.453e^-4	0.821	INTRON hiw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
2R	673356	2R_673356_SNP [dm3] 2R_4785851_SNP [dm6]	C	A	4.473e^-4	0.821	DOWNSTREAM CG12547 INTERGENIC	transposable element FlyBase
3R	7341005	3R_7341005_SNP [dm3] 3R_11515283_SNP [dm6]	G	A	4.474e^-4	0.821	INTERGENIC
2L	14850058	2L_14850058_SNP [dm3] 2L_14850058_SNP [dm6]	T	G	4.484e^-4	0.821	UPSTREAM CG15279 INTRON CG15279
3L	15346574	3L_15346574_SNP [dm3] 3L_15353474_SNP [dm6]	G	C	4.486e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18433250	2L_18433250_SNP [dm3] 2L_18433250_SNP [dm6]	G	C	4.492e^-4	0.821	UPSTREAM CR44488 INTERGENIC
3R	24800516	3R_24800516_SNP [dm3] 3R_28974794_SNP [dm6]	C	A	4.492e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3263109	X_3263109_SNP [dm3] X_3369076_SNP [dm6]	T	C	4.500e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
3L	19287233	3L_19287233_SNP [dm3] 3L_19294133_SNP [dm6]	G	C	4.504e^-4	0.821	UPSTREAM fal INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 transposable element FlyBase
X	11343037	X_11343037_SNP [dm3] X_11449004_SNP [dm6]	G	T	4.517e^-4	0.821	INTRON Evi5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15900552	3L_15900552_SNP [dm3] 3L_15907452_SNP [dm6]	G	A	4.518e^-4	0.821	INTRON sff
3R	27634216	3R_27634216_SNP [dm3] 3R_31808494_SNP [dm6]	C	G	4.521e^-4	0.821	INTRON CG11576	TF binding site mE1_TFBS_cad
X	3263060	X_3263060_SNP [dm3] X_3369027_SNP [dm6]	G	T	4.528e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
3R	8239356	3R_8239356_SNP [dm3] 3R_12413634_SNP [dm6]	A	C	4.531e^-4	0.821	START_GAINED Dip-C UTR_5_PRIME Dip-C UPSTREAM pps & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_ttk
2L	1095151	2L_1095151_SNP [dm3] 2L_1095151_SNP [dm6]	G	A	4.543e^-4	0.821	INTRON CG4629
2L	14462237	2L_14462237_SNP [dm3] 2L_14462237_SNP [dm6]	C	T	4.545e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	6280620	2R_6280620_SNP [dm3] 2R_10393115_SNP [dm6]	T	C	4.549e^-4	0.821	INTRON CG42732
3L	4016870	3L_4016870_SNP [dm3] 3L_4016870_SNP [dm6]	A	T	4.551e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	21862624	3L_21862624_SNP [dm3] 3L_21869524_SNP [dm6]	A	T	4.562e^-4	0.821	INTRON mub
3L	12580424	3L_12580424_SNP [dm3] 3L_12587324_SNP [dm6]	A	T	4.562e^-4	0.821	INTRON ara
3R	1955264	3R_1955264_DEL [dm3] 3R_6129542_DEL [dm6]	AA	A	4.571e^-4	0.821	INTERGENIC
2L	3566200	2L_3566200_SNP [dm3] 2L_3566200_SNP [dm6]	C	T	4.574e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	17102771	2R_17102771_SNP [dm3] 2R_21215266_SNP [dm6]	T	G	4.578e^-4	0.821	UPSTREAM CG4302 DOWNSTREAM CG15661 INTERGENIC
2L	17060229	2L_17060229_SNP [dm3] 2L_17060229_SNP [dm6]	G	A	4.581e^-4	0.821	INTERGENIC
3R	26113462	3R_26113462_SNP [dm3] 3R_30287740_SNP [dm6]	T	C	4.583e^-4	0.821	INTRON hdc
3L	5202141	3L_5202141_DEL [dm3] 3L_5209041_DEL [dm6]	CA	C	4.595e^-4	0.821	INTRON shep
3R	15098116	3R_15098116_DEL [dm3] 3R_19272394_DEL [dm6]	ATATAAA	A	4.602e^-4	0.821	INTERGENIC
3L	17677747	3L_17677747_SNP [dm3] 3L_17684647_SNP [dm6]	T	C	4.607e^-4	0.821	INTERGENIC
3R	20208796	3R_20208796_SNP [dm3] 3R_24383074_SNP [dm6]	C	T	4.617e^-4	0.821	UTR_3_PRIME CG17780
3R	4932254	3R_4932254_SNP [dm3] 3R_9106532_SNP [dm6]	A	C	4.619e^-4	0.821	INTRON pum

By genomic position
Variant impact
Gene name

mn_Resp_2_Heptanone phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results