DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.631e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2102 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	13561574	2R_13561574_SNP [dm3] 2R_17674069_SNP [dm6]	A	G	9.871e^-7	0.854	UTR_3_PRIME Sema-1b
3R	13810644	3R_13810644_DEL [dm3] 3R_17984922_DEL [dm6]	CGGTCCGAAATG...	C	1.656e^-6	0.854	INTRON cpo
3L	14081572	3L_14081572_SNP [dm3] 3L_14088472_SNP [dm6]	C	A	2.462e^-6	0.854	INTERGENIC
3L	14111118	3L_14111118_SNP [dm3] 3L_14118018_SNP [dm6]	G	A	3.619e^-6	0.854	INTRON Sox21b
3L	10653279	3L_10653279_SNP [dm3] 3L_10660179_SNP [dm6]	C	T	4.110e^-6	0.854	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9283250	3L_9283250_SNP [dm3] 3L_9290150_SNP [dm6]	T	G	5.009e^-6	0.854	INTERGENIC
3R	25613227	3R_25613227_SNP [dm3] 3R_29787505_SNP [dm6]	T	C	5.201e^-6	0.854	INTRON kay
3R	18997586	3R_18997586_SNP [dm3] 3R_23171864_SNP [dm6]	G	T	6.474e^-6	0.854	INTRON Irk1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14081579	3L_14081579_SNP [dm3] 3L_14088479_SNP [dm6]	T	C	6.550e^-6	0.854	INTERGENIC
3L	16207811	3L_16207811_SNP [dm3] 3L_16214711_SNP [dm6]	C	G	6.658e^-6	0.854	DOWNSTREAM CR43891 INTRON CG13073
3R	9288190	3R_9288190_SNP [dm3] 3R_13462468_SNP [dm6]	C	T	8.135e^-6	0.854	INTRON CR17025 & 1 other	TF binding site mE1_TFBS_cad
3R	4675435	3R_4675435_SNP [dm3] 3R_8849713_SNP [dm6]	A	C	9.617e^-6	0.854	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	12871337	2R_12871337_SNP [dm3] 2R_16983832_SNP [dm6]	C	T	9.708e^-6	0.854	INTRON Cbp53E
3L	2628044	3L_2628044_SNP [dm3] 3L_2628044_SNP [dm6]	T	G	9.841e^-6	0.854	INTRON Pxn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	17684104	3R_17684104_SNP [dm3] 3R_21858382_SNP [dm6]	G	C	1.015e^-5	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12947745	2L_12947745_SNP [dm3] 2L_12947745_SNP [dm6]	G	A	1.084e^-5	0.854	INTERGENIC
3L	9781587	3L_9781587_SNP [dm3] 3L_9788487_SNP [dm6]	A	G	1.092e^-5	0.854	UTR_3_PRIME Zasp67
3R	9425324	3R_9425324_SNP [dm3] 3R_13599602_SNP [dm6]	T	G	1.095e^-5	0.854	INTERGENIC
3R	23733511	3R_23733511_SNP [dm3] 3R_27907789_SNP [dm6]	C	T	1.104e^-5	0.854	INTERGENIC
X	15432276	X_15432276_SNP [dm3] X_15538243_SNP [dm6]	C	T	1.118e^-5	0.854	INTRON Ac13E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3082230	2R_3082230_SNP [dm3] 2R_7194725_SNP [dm6]	G	C	1.204e^-5	0.854	INTRON pk
2L	21321520	2L_21321520_SNP [dm3] 2L_21321520_SNP [dm6]	C	A	1.321e^-5	0.854	INTERGENIC
2L	3915988	2L_3915988_SNP [dm3] 2L_3915988_SNP [dm6]	C	T	1.338e^-5	0.854	INTRON fred
2R	17123050	2R_17123050_SNP [dm3] 2R_21235545_SNP [dm6]	A	G	1.448e^-5	0.854	INTRON ASPP
2L	3014626	2L_3014626_SNP [dm3] 2L_3014626_SNP [dm6]	A	T	1.530e^-5	0.854	INTRON CG17265
3R	9288094	3R_9288094_SNP [dm3] 3R_13462372_SNP [dm6]	C	T	1.531e^-5	0.854	INTRON CR17025 & 1 other	TF binding site mE1_TFBS_cad
3L	16207910	3L_16207910_SNP [dm3] 3L_16214810_SNP [dm6]	T	G	1.538e^-5	0.854	DOWNSTREAM CR43891 INTRON CG13073
3R	13810624	3R_13810624_SNP [dm3] 3R_17984902_SNP [dm6]	A	G	1.552e^-5	0.854	INTRON cpo
2L	3014628	2L_3014628_SNP [dm3] 2L_3014628_SNP [dm6]	A	T	1.563e^-5	0.854	INTRON CG17265
3R	18839607	3R_18839607_INS [dm3] 3R_23013885_INS [dm6]	T	TT	1.595e^-5	0.854	INTRON CG6688	TF binding site mE1_TFBS_zfh1
2R	3003748	2R_3003748_SNP [dm3] 2R_7116243_SNP [dm6]	C	A	1.652e^-5	0.854	INTRON esn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16207843	3L_16207843_SNP [dm3] 3L_16214743_SNP [dm6]	A	G	1.677e^-5	0.854	DOWNSTREAM CR43891 INTRON CG13073
2R	18767017	2R_18767017_SNP [dm3] 2R_22879494_SNP [dm6]	T	A	1.740e^-5	0.854	INTRON PIP5K59B	TF binding site mE1_TFBS_chinmo
2R	17896788	2R_17896788_SNP [dm3] 2R_22009283_SNP [dm6]	C	T	1.742e^-5	0.854	INTRON CG34370
3L	10653291	3L_10653291_SNP [dm3] 3L_10660191_SNP [dm6]	A	T	1.751e^-5	0.854	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10653268	3L_10653268_SNP [dm3] 3L_10660168_SNP [dm6]	T	A	1.777e^-5	0.854	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11787494	2L_11787494_SNP [dm3] 2L_11787494_SNP [dm6]	A	G	1.778e^-5	0.854	UPSTREAM CG14931 INTERGENIC
3R	9288121	3R_9288121_SNP [dm3] 3R_13462399_SNP [dm6]	T	C	1.837e^-5	0.854	INTRON CR17025 & 1 other	TF binding site mE1_TFBS_cad
3L	10653284	3L_10653284_SNP [dm3] 3L_10660184_SNP [dm6]	A	G	1.925e^-5	0.854	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16207787	3L_16207787_SNP [dm3] 3L_16214687_SNP [dm6]	G	T	2.072e^-5	0.854	DOWNSTREAM CR43891 INTRON CG13073
X	17808842	X_17808842_SNP [dm3] X_17914809_SNP [dm6]	G	A	2.073e^-5	0.854	INTRON CG6847
3L	16207785	3L_16207785_SNP [dm3] 3L_16214685_SNP [dm6]	C	T	2.077e^-5	0.854	DOWNSTREAM CR43891 INTRON CG13073
3L	16207805	3L_16207805_SNP [dm3] 3L_16214705_SNP [dm6]	A	G	2.083e^-5	0.854	DOWNSTREAM CR43891 INTRON CG13073
3L	1840816	3L_1840816_SNP [dm3] 3L_1840816_SNP [dm6]	A	G	2.088e^-5	0.854	SYNONYMOUS_CODING Cpr62Bc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18839610	3R_18839610_SNP [dm3] 3R_23013888_SNP [dm6]	A	C	2.109e^-5	0.854	INTRON CG6688	TF binding site mE1_TFBS_zfh1
X	21896520	X_21896520_SNP [dm3] X_22494684_SNP [dm6]	G	C	2.164e^-5	0.854	INTRON l_1_G0196	transposable element FlyBase
3L	10273929	3L_10273929_INS [dm3] 3L_10280829_INS [dm6]	G	GTAAG	2.199e^-5	0.854	INTERGENIC
3R	20985484	3R_20985484_SNP [dm3] 3R_25159762_SNP [dm6]	G	A	2.300e^-5	0.854	INTERGENIC
3R	9288187	3R_9288187_SNP [dm3] 3R_13462465_SNP [dm6]	T	C	2.306e^-5	0.854	INTRON CR17025 & 1 other	TF binding site mE1_TFBS_cad
3L	3044877	3L_3044877_SNP [dm3] 3L_3044877_SNP [dm6]	T	A	2.359e^-5	0.854	DOWNSTREAM Jafrac2 INTRON scramb2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6618615	2R_6618615_SNP [dm3] 2R_10731110_SNP [dm6]	C	A	2.451e^-5	0.854	UPSTREAM CG7220 & 1 other INTRON CG12338	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3915958	2L_3915958_SNP [dm3] 2L_3915958_SNP [dm6]	T	C	2.492e^-5	0.854	INTRON fred
3L	2810144	3L_2810144_SNP [dm3] 3L_2810144_SNP [dm6]	A	T	2.562e^-5	0.854	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	18449980	2R_18449980_SNP [dm3] 2R_22562475_SNP [dm6]	A	T	2.677e^-5	0.854	UPSTREAM px DOWNSTREAM dnr1 INTRON CG11362	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18449974	2R_18449974_DEL [dm3] 2R_22562469_DEL [dm6]	TAATG	T	2.683e^-5	0.854	UPSTREAM px DOWNSTREAM dnr1 INTRON CG11362	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12947726	2L_12947726_SNP [dm3] 2L_12947726_SNP [dm6]	G	A	2.718e^-5	0.854	INTERGENIC
3L	16308014	3L_16308014_SNP [dm3] 3L_16314914_SNP [dm6]	C	T	2.811e^-5	0.854	SYNONYMOUS_CODING CG13062	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14416611	2L_14416611_INS [dm3] 2L_14416611_INS [dm6]	A	TCAC	2.821e^-5	0.854	DOWNSTREAM Pburs INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8508300	2L_8508300_SNP [dm3] 2L_8508300_SNP [dm6]	T	G	2.905e^-5	0.854	DOWNSTREAM CG13096 INTERGENIC
3R	23199096	3R_23199096_SNP [dm3] 3R_27373374_SNP [dm6]	T	A	2.961e^-5	0.854	DOWNSTREAM CG42534 INTERGENIC
2L	15858518	2L_15858518_SNP [dm3] 2L_15858518_SNP [dm6]	C	G	3.032e^-5	0.854	INTERGENIC
3L	10653278	3L_10653278_SNP [dm3] 3L_10660178_SNP [dm6]	C	T	3.036e^-5	0.854	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10653161	3L_10653161_SNP [dm3] 3L_10660061_SNP [dm6]	C	A	3.143e^-5	0.854	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9287561	3R_9287561_SNP [dm3] 3R_13461839_SNP [dm6]	A	T	3.176e^-5	0.854	INTRON CR17025 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24551445	3R_24551445_SNP [dm3] 3R_28725723_SNP [dm6]	C	T	3.179e^-5	0.854	SYNONYMOUS_CODING htt
3L	10653214	3L_10653214_DEL [dm3] 3L_10660114_DEL [dm6]	ATTTTCATTTG...	A	3.285e^-5	0.854	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23158297	3R_23158297_SNP [dm3] 3R_27332575_SNP [dm6]	A	G	3.381e^-5	0.854	INTERGENIC
3R	10348692	3R_10348692_SNP [dm3] 3R_14522970_SNP [dm6]	G	A	3.407e^-5	0.854	NON_SYNONYMOUS_CODING Cyp313a1 INTRON Pde6
2R	17896781	2R_17896781_SNP [dm3] 2R_22009276_SNP [dm6]	T	C	3.453e^-5	0.854	INTRON CG34370
3R	26466103	3R_26466103_SNP [dm3] 3R_30640381_SNP [dm6]	G	T	3.471e^-5	0.854	INTERGENIC
3L	15776679	3L_15776679_SNP [dm3] 3L_15783579_SNP [dm6]	C	G	3.598e^-5	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	11046453	2L_11046453_SNP [dm3] 2L_11046453_SNP [dm6]	G	T	3.614e^-5	0.854	INTRON Samuel
2L	11046221	2L_11046221_SNP [dm3] 2L_11046221_SNP [dm6]	A	G	3.697e^-5	0.854	INTRON Samuel
2R	15431754	2R_15431754_SNP [dm3] 2R_19544249_SNP [dm6]	G	T	3.769e^-5	0.854	INTRON sm
2R	3007614	2R_3007614_SNP [dm3] 2R_7120109_SNP [dm6]	T	A	3.831e^-5	0.854	INTRON esn
2R	2999617	2R_2999617_DEL [dm3] 2R_7112112_DEL [dm6]	GCAGTG	G	3.845e^-5	0.854	INTRON esn	TF binding site mE1_TFBS_inv
3R	10694892	3R_10694892_SNP [dm3] 3R_14869170_SNP [dm6]	G	T	3.910e^-5	0.854	INTRON btsz
2R	12891597	2R_12891597_SNP [dm3] 2R_17004092_SNP [dm6]	C	T	3.938e^-5	0.854	SYNONYMOUS_CODING NiPp1 DOWNSTREAM CG6796	TF binding site mE1_TFBS_sens
2R	14494432	2R_14494432_SNP [dm3] 2R_18606927_SNP [dm6]	A	C	3.953e^-5	0.854	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	20371006	3R_20371006_SNP [dm3] 3R_24545284_SNP [dm6]	A	G	4.271e^-5	0.854	INTRON Esyt2	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	1515961	3R_1515961_SNP [dm3] 3R_5690239_SNP [dm6]	G	A	4.278e^-5	0.854	DOWNSTREAM CG2104 INTRON plx
2R	11119735	2R_11119735_SNP [dm3] 2R_15232230_SNP [dm6]	T	G	4.331e^-5	0.854	INTRON Fs EXON CR44370	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	16495315	2L_16495315_SNP [dm3] 2L_16495315_SNP [dm6]	C	T	4.394e^-5	0.854	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	10653170	3L_10653170_DEL [dm3] 3L_10660070_DEL [dm6]	AGATTAAATTTAA...	A	4.413e^-5	0.854	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26118740	3R_26118740_SNP [dm3] 3R_30293018_SNP [dm6]	C	G	4.420e^-5	0.854	INTRON hdc
2R	18449987	2R_18449987_SNP [dm3] 2R_22562482_SNP [dm6]	C	T	4.529e^-5	0.854	UPSTREAM px DOWNSTREAM dnr1 INTRON CG11362	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4994420	3L_4994420_SNP [dm3] 3L_4994420_SNP [dm6]	G	A	4.564e^-5	0.854	SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18515860	2R_18515860_SNP [dm3] 2R_22628355_SNP [dm6]	G	T	4.574e^-5	0.854	SPLICE_SITE_REGION CG33143 INTRON CG33143
3L	10653293	3L_10653293_SNP [dm3] 3L_10660193_SNP [dm6]	T	A	4.616e^-5	0.854	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9350566	3R_9350566_SNP [dm3] 3R_13524844_SNP [dm6]	C	A	4.650e^-5	0.854	INTERGENIC
3R	10318496	3R_10318496_INS [dm3] 3R_14492774_INS [dm6]	T	TTAGATTAGATAGATAGATA...	4.746e^-5	0.854	INTERGENIC
2L	3915876	2L_3915876_SNP [dm3] 2L_3915876_SNP [dm6]	T	A	4.841e^-5	0.854	INTRON fred
2R	16325970	2R_16325970_SNP [dm3] 2R_20438465_SNP [dm6]	A	G	4.968e^-5	0.854	INTRON CG12484
2L	9138875	2L_9138875_SNP [dm3] 2L_9138875_SNP [dm6]	T	C	5.017e^-5	0.854	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6890138	2L_6890138_SNP [dm3] 2L_6890138_SNP [dm6]	A	G	5.074e^-5	0.854	INTRON Nlg2
2R	9843555	2R_9843555_INS [dm3] 2R_13956050_INS [dm6]	T	TTGAT	5.083e^-5	0.854	UPSTREAM AGO1 DOWNSTREAM mRpL53 & 1 other INTRON AGO1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3R	23199080	3R_23199080_SNP [dm3] 3R_27373358_SNP [dm6]	C	T	5.083e^-5	0.854	DOWNSTREAM CG42534 INTERGENIC
X	21896577	X_21896577_SNP [dm3] X_22494741_SNP [dm6]	T	C	5.106e^-5	0.854	INTRON l_1_G0196	transposable element FlyBase
2L	4432965	2L_4432965_SNP [dm3] 2L_4432965_SNP [dm6]	A	C	5.170e^-5	0.854	UPSTREAM CG34177 & 1 other INTRON CG15431
3R	18839629	3R_18839629_SNP [dm3] 3R_23013907_SNP [dm6]	T	A	5.251e^-5	0.854	INTRON CG6688	TF binding site mE1_TFBS_zfh1
3L	15776675	3L_15776675_SNP [dm3] 3L_15783575_SNP [dm6]	C	T	5.252e^-5	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	10318514	3R_10318514_SNP [dm3] 3R_14492792_SNP [dm6]	T	C	5.334e^-5	0.854	INTERGENIC
3R	20496111	3R_20496111_SNP [dm3] 3R_24670389_SNP [dm6]	G	C	5.488e^-5	0.854	INTRON slo	TF binding site mE1_TFBS_cad
3L	2810093	3L_2810093_SNP [dm3] 3L_2810093_SNP [dm6]	T	C	5.603e^-5	0.854	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	6618654	2R_6618654_SNP [dm3] 2R_10731149_SNP [dm6]	C	T	5.675e^-5	0.854	UPSTREAM CG7220 & 1 other INTRON CG12338	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9456879	3R_9456879_SNP [dm3] 3R_13631157_SNP [dm6]	G	C	5.676e^-5	0.854	UPSTREAM CG10841 EXON CR45594	TF binding site BDTNP1_TFBS_sna
2R	6618688	2R_6618688_SNP [dm3] 2R_10731183_SNP [dm6]	C	T	5.897e^-5	0.854	UPSTREAM CG7220 & 1 other INTRON CG12338	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4994426	3L_4994426_SNP [dm3] 3L_4994426_SNP [dm6]	A	T	5.917e^-5	0.854	NON_SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19756500	X_19756500_SNP [dm3] X_19862467_SNP [dm6]	C	A	5.940e^-5	0.854	SYNONYMOUS_CODING CG15618 UTR_3_PRIME CG15618	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9439340	3R_9439340_SNP [dm3] 3R_13613618_SNP [dm6]	T	C	6.002e^-5	0.854	INTERGENIC
2L	11046490	2L_11046490_DEL [dm3] 2L_11046490_DEL [dm6]	AGCATATA	A	6.037e^-5	0.854	INTRON Samuel
3L	13586322	3L_13586322_SNP [dm3] 3L_13593222_SNP [dm6]	A	T	6.071e^-5	0.854	INTRON bru-3
2L	16493517	2L_16493517_SNP [dm3] 2L_16493517_SNP [dm6]	T	G	6.073e^-5	0.854	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	13531785	2R_13531785_SNP [dm3] 2R_17644280_SNP [dm6]	A	G	6.175e^-5	0.854	INTERGENIC
3R	20803491	3R_20803491_SNP [dm3] 3R_24977769_SNP [dm6]	C	T	6.211e^-5	0.854	INTERGENIC	TF binding site mE1_TFBS_cad
2L	18817073	2L_18817073_SNP [dm3] 2L_18817073_SNP [dm6]	G	C	6.212e^-5	0.854	INTERGENIC
2L	12337251	2L_12337251_SNP [dm3] 2L_12337251_SNP [dm6]	G	A	6.283e^-5	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	15432132	X_15432132_INS [dm3] X_15538099_INS [dm6]	G	GCTGG	6.375e^-5	0.854	INTRON Ac13E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14084793	3L_14084793_SNP [dm3] 3L_14091693_SNP [dm6]	G	T	6.418e^-5	0.854	INTERGENIC
2L	11787526	2L_11787526_SNP [dm3] 2L_11787526_SNP [dm6]	A	T	6.614e^-5	0.854	UPSTREAM CG14931 INTERGENIC
2R	3009831	2R_3009831_SNP [dm3] 2R_7122326_SNP [dm6]	C	G	6.649e^-5	0.854	INTRON esn
3R	26057339	3R_26057339_SNP [dm3] 3R_30231617_SNP [dm6]	G	A	6.701e^-5	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2L	12337239	2L_12337239_SNP [dm3] 2L_12337239_SNP [dm6]	A	G	6.751e^-5	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10315953	3R_10315953_SNP [dm3] 3R_14490231_SNP [dm6]	A	C	6.767e^-5	0.854	INTERGENIC
2L	18885130	2L_18885130_SNP [dm3] 2L_18885130_SNP [dm6]	C	A	6.791e^-5	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	19027789	3L_19027789_SNP [dm3] 3L_19034689_SNP [dm6]	C	T	6.792e^-5	0.854	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17391225	2R_17391225_SNP [dm3] 2R_21503720_SNP [dm6]	T	A	6.830e^-5	0.854	INTRON MESK2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
2R	12977324	2R_12977324_SNP [dm3] 2R_17089819_SNP [dm6]	G	A	6.853e^-5	0.854	SYNONYMOUS_CODING Sply	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14416642	2L_14416642_SNP [dm3] 2L_14416642_SNP [dm6]	A	C	6.859e^-5	0.854	DOWNSTREAM Pburs INTERGENIC
3L	3009216	3L_3009216_SNP [dm3] 3L_3009216_SNP [dm6]	T	C	6.950e^-5	0.854	SYNONYMOUS_CODING FMRFaR	TF binding site mE1_TFBS_cad
3R	9331793	3R_9331793_SNP [dm3] 3R_13506071_SNP [dm6]	G	A	6.981e^-5	0.854	INTERGENIC
3R	8083723	3R_8083723_SNP [dm3] 3R_12258001_SNP [dm6]	C	T	7.023e^-5	0.854	UPSTREAM svp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	24268759	3R_24268759_SNP [dm3] 3R_28443037_SNP [dm6]	A	C	7.049e^-5	0.854	INTRON beat-VI
2L	8529738	2L_8529738_SNP [dm3] 2L_8529738_SNP [dm6]	A	C	7.081e^-5	0.854	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	16337378	3R_16337378_SNP [dm3] 3R_20511656_SNP [dm6]	T	A	7.101e^-5	0.854	INTRON CG4288	TF binding site mE1_TFBS_sbb
3L	15778740	3L_15778740_INS [dm3] 3L_15785640_INS [dm6]	A	AA	7.109e^-5	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_D mE1_TFBS_HSA
2R	4900119	2R_4900119_SNP [dm3] 2R_9012614_SNP [dm6]	A	G	7.178e^-5	0.854	UPSTREAM CG8172 INTRON CG8172	TF binding site mE1_TFBS_chinmo
2L	3545517	2L_3545517_SNP [dm3] 2L_3545517_SNP [dm6]	A	G	7.202e^-5	0.854	UTR_5_PRIME drm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2017412	2L_2017412_SNP [dm3] 2L_2017412_SNP [dm6]	C	T	7.252e^-5	0.854	UPSTREAM CG4238 INTRON CG4238
3L	15746190	3L_15746190_SNP [dm3] 3L_15753090_SNP [dm6]	A	T	7.280e^-5	0.854	INTERGENIC
2L	11046470	2L_11046470_SNP [dm3] 2L_11046470_SNP [dm6]	C	A	7.323e^-5	0.854	INTRON Samuel
3R	9442264	3R_9442264_SNP [dm3] 3R_13616542_SNP [dm6]	G	C	7.450e^-5	0.854	DOWNSTREAM CG9269 INTERGENIC
2L	11872253	2L_11872253_SNP [dm3] 2L_11872253_SNP [dm6]	C	T	7.554e^-5	0.854	INTRON Pde1c
2L	12337235	2L_12337235_SNP [dm3] 2L_12337235_SNP [dm6]	G	A	7.645e^-5	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16935169	2R_16935169_SNP [dm3] 2R_21047664_SNP [dm6]	C	T	7.649e^-5	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	12916091	2R_12916091_SNP [dm3] 2R_17028586_SNP [dm6]	A	C	7.689e^-5	0.854	INTRON RhoGEF2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	13607068	2R_13607068_SNP [dm3] 2R_17719563_SNP [dm6]	C	G	7.809e^-5	0.854	UPSTREAM CG6424 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3R	2471705	3R_2471705_SNP [dm3] 3R_6645983_SNP [dm6]	T	C	7.885e^-5	0.854	UPSTREAM Taf1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
3L	21193195	3L_21193195_SNP [dm3] 3L_21200095_SNP [dm6]	T	C	7.900e^-5	0.854	NON_SYNONYMOUS_CODING CG33056 INTRON CG33054
2R	17896824	2R_17896824_SNP [dm3] 2R_22009319_SNP [dm6]	A	G	7.930e^-5	0.854	INTRON CG34370
3L	2407718	3L_2407718_SNP [dm3] 3L_2407718_SNP [dm6]	T	C	7.978e^-5	0.854	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9387002	2L_9387002_SNP [dm3] 2L_9387002_SNP [dm6]	T	A	8.053e^-5	0.854	UPSTREAM Aldh INTRON Shawl
2R	17898418	2R_17898418_SNP [dm3] 2R_22010913_SNP [dm6]	T	A	8.094e^-5	0.854	INTRON CG34370
3R	20468113	3R_20468113_INS [dm3] 3R_24642391_INS [dm6]	C	CGATAC	8.178e^-5	0.854	INTRON puf	TF binding site mE1_TFBS_cad
3L	15031753	3L_15031753_SNP [dm3] 3L_15038653_SNP [dm6]	T	C	8.215e^-5	0.854	INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_hkb
3L	14081931	3L_14081931_INS [dm3] 3L_14088831_INS [dm6]	T	TA	8.233e^-5	0.854	INTERGENIC
3R	14508677	3R_14508677_SNP [dm3] 3R_18682955_SNP [dm6]	A	G	8.254e^-5	0.854	SYNONYMOUS_CODING CG7708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3915869	2L_3915869_SNP [dm3] 2L_3915869_SNP [dm6]	A	G	8.276e^-5	0.854	INTRON fred
2R	19660436	2R_19660436_SNP [dm3] 2R_23772913_SNP [dm6]	T	A	8.311e^-5	0.854	INTRON CG9850
3R	9438289	3R_9438289_SNP [dm3] 3R_13612567_SNP [dm6]	T	A	8.343e^-5	0.854	UPSTREAM CG9757 INTERGENIC
2R	18515873	2R_18515873_SNP [dm3] 2R_22628368_SNP [dm6]	C	T	8.389e^-5	0.854	SYNONYMOUS_CODING CG33143
3L	12938237	3L_12938237_SNP [dm3] 3L_12945137_SNP [dm6]	C	G	8.462e^-5	0.854	INTERGENIC
2L	16490857	2L_16490857_SNP [dm3] 2L_16490857_SNP [dm6]	C	G	8.584e^-5	0.854	UPSTREAM Tpr2 DOWNSTREAM CG4580 EXON CR44994	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Ubx
2R	18236346	2R_18236346_SNP [dm3] 2R_22348841_SNP [dm6]	A	C	8.668e^-5	0.854	UTR_3_PRIME CG11298 INTRON Liprin-gamma
2L	16494548	2L_16494548_SNP [dm3] 2L_16494548_SNP [dm6]	G	C	8.768e^-5	0.854	INTRON Tpr2	TF binding site mE1_TFBS_bab1
3R	16337397	3R_16337397_DEL [dm3] 3R_20511675_DEL [dm6]	CG	C	8.838e^-5	0.854	INTRON CG4288	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8518074	3L_8518074_SNP [dm3] 3L_8524974_SNP [dm6]	T	G	8.839e^-5	0.854	UPSTREAM foi & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	1450630	3L_1450630_SNP [dm3] 3L_1450630_SNP [dm6]	T	A	8.892e^-5	0.854	INTRON Ptp61F
2L	12337252	2L_12337252_SNP [dm3] 2L_12337252_SNP [dm6]	C	A	8.979e^-5	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12976220	2R_12976220_SNP [dm3] 2R_17088715_SNP [dm6]	G	A	8.983e^-5	0.854	UTR_3_PRIME Sply
3L	8221156	3L_8221156_SNP [dm3] 3L_8228056_SNP [dm6]	G	T	9.008e^-5	0.854	INTERGENIC
X	10434227	X_10434227_SNP [dm3] X_10540194_SNP [dm6]	G	A	9.030e^-5	0.854	INTRON spri	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9134232	3R_9134232_SNP [dm3] 3R_13308510_SNP [dm6]	T	A	9.043e^-5	0.854	UTR_5_PRIME CG32473 UPSTREAM CG32473 INTRON CG32473
3R	9441901	3R_9441901_SNP [dm3] 3R_13616179_SNP [dm6]	T	A	9.078e^-5	0.854	NON_SYNONYMOUS_CODING CG9269
3R	14972226	3R_14972226_SNP [dm3] 3R_19146504_SNP [dm6]	G	A	9.119e^-5	0.854	INTRON Ppcs
3R	26807372	3R_26807372_DEL [dm3] 3R_30981650_DEL [dm6]	TATATTCAAGAGAAAT...	T	9.181e^-5	0.854	INTRON 5-HT7
2R	6618695	2R_6618695_SNP [dm3] 2R_10731190_SNP [dm6]	A	C	9.229e^-5	0.854	UPSTREAM CG7220 & 1 other INTRON CG12338	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	23871797	3R_23871797_SNP [dm3] 3R_28046075_SNP [dm6]	G	A	9.258e^-5	0.854	INTRON CG34362
3R	15042843	3R_15042843_SNP [dm3] 3R_19217121_SNP [dm6]	A	G	9.315e^-5	0.854	UTR_3_PRIME vib DOWNSTREAM vib	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6809477	X_6809477_SNP [dm3] X_6915444_SNP [dm6]	T	G	9.396e^-5	0.854	INTRON CG14431
3R	23199454	3R_23199454_SNP [dm3] 3R_27373732_SNP [dm6]	A	G	9.399e^-5	0.854	INTERGENIC
3R	4224635	3R_4224635_SNP [dm3] 3R_8398913_SNP [dm6]	T	A	9.553e^-5	0.854	INTRON CG45263
3L	16307733	3L_16307733_SNP [dm3] 3L_16314633_SNP [dm6]	A	G	9.567e^-5	0.854	NON_SYNONYMOUS_CODING CG13062	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2575648	3L_2575648_SNP [dm3] 3L_2575648_SNP [dm6]	C	T	9.611e^-5	0.854	INTRON msn	TF binding site mE1_TFBS_HSA
3L	16685270	3L_16685270_DEL [dm3] 3L_16692170_DEL [dm6]	AAGG	T	9.710e^-5	0.854	INTRON Lasp & 2 others	TF binding site mE1_TFBS_cad
3R	11231035	3R_11231035_INS [dm3] 3R_15405313_INS [dm6]	A	AGGGGGAAAA	9.725e^-5	0.854	SPLICE_SITE_REGION CG6125 INTRON CG6125
2R	12891581	2R_12891581_SNP [dm3] 2R_17004076_SNP [dm6]	T	C	9.728e^-5	0.854	NON_SYNONYMOUS_CODING NiPp1 DOWNSTREAM CG6796	TF binding site mE1_TFBS_sens
3R	17954302	3R_17954302_SNP [dm3] 3R_22128580_SNP [dm6]	A	C	9.766e^-5	0.854	INTRON CG42390	TF binding site mE1_TFBS_inv
X	11304155	X_11304155_SNP [dm3] X_11410122_SNP [dm6]	C	T	9.781e^-5	0.854	SYNONYMOUS_CODING CG15196 DOWNSTREAM dlg1
X	7118473	X_7118473_SNP [dm3] X_7224440_SNP [dm6]	C	G	9.831e^-5	0.854	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10510024	2R_10510024_SNP [dm3] 2R_14622519_SNP [dm6]	C	A	9.995e^-5	0.854	UPSTREAM snoRNA:Me28S-U1848 & 4 others DOWNSTREAM snoRNA:Me18S-C1366 & 2 others INTRON Uhg5 EXON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	15101089	2L_15101089_SNP [dm3] 2L_15101089_SNP [dm6]	T	G	1.001e^-4	0.854	INTERGENIC
3L	17427003	3L_17427003_SNP [dm3] 3L_17433903_SNP [dm6]	A	G	1.001e^-4	0.854	START_GAINED CG32176 UTR_5_PRIME CG32176 UPSTREAM frc & 1 other DOWNSTREAM CG12229	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26055553	3R_26055553_SNP [dm3] 3R_30229831_SNP [dm6]	A	T	1.001e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	6735946	3L_6735946_DEL [dm3] 3L_6742846_DEL [dm6]	TT	T	1.002e^-4	0.854	UPSTREAM dikar INTRON dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	9237308	3L_9237308_SNP [dm3] 3L_9244208_SNP [dm6]	C	T	1.008e^-4	0.854	INTERGENIC
3L	21256059	3L_21256059_SNP [dm3] 3L_21262959_SNP [dm6]	A	T	1.011e^-4	0.854	INTRON Eip78C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9313920	3R_9313920_SNP [dm3] 3R_13488198_SNP [dm6]	T	C	1.014e^-4	0.854	INTERGENIC
X	14292961	X_14292961_SNP [dm3] X_14398928_SNP [dm6]	G	A	1.026e^-4	0.854	INTRON dpr8
3R	9442267	3R_9442267_SNP [dm3] 3R_13616545_SNP [dm6]	G	A	1.035e^-4	0.854	DOWNSTREAM CG9269 INTERGENIC
3R	6302164	3R_6302164_SNP [dm3] 3R_10476442_SNP [dm6]	T	C	1.040e^-4	0.854	INTERGENIC
3L	6735916	3L_6735916_SNP [dm3] 3L_6742816_SNP [dm6]	C	T	1.051e^-4	0.854	UPSTREAM dikar INTRON dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	16502880	2L_16502880_SNP [dm3] 2L_16502880_SNP [dm6]	G	A	1.059e^-4	0.854	INTRON Tpr2
X	19877360	X_19877360_SNP [dm3] X_19983327_SNP [dm6]	T	G	1.069e^-4	0.854	INTERGENIC
2L	6890122	2L_6890122_SNP [dm3] 2L_6890122_SNP [dm6]	G	A	1.071e^-4	0.854	INTRON Nlg2
3R	25411737	3R_25411737_SNP [dm3] 3R_29586015_SNP [dm6]	C	A	1.082e^-4	0.854	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12944874	2L_12944874_SNP [dm3] 2L_12944874_SNP [dm6]	G	A	1.082e^-4	0.854	INTERGENIC
3L	23440523	3L_23440523_SNP [dm3] 3L_23447423_SNP [dm6]	A	G	1.084e^-4	0.854	INTERGENIC	transposable element FlyBase
2R	11577959	2R_11577959_SNP [dm3] 2R_15690454_SNP [dm6]	C	T	1.090e^-4	0.854	UPSTREAM CG30088 DOWNSTREAM CR44372 INTRON CG30090
2L	8508297	2L_8508297_SNP [dm3] 2L_8508297_SNP [dm6]	T	C	1.093e^-4	0.854	DOWNSTREAM CG13096 INTERGENIC
2L	5269057	2L_5269057_SNP [dm3] 2L_5269057_SNP [dm6]	A	G	1.099e^-4	0.854	NON_SYNONYMOUS_CODING Cyp4ac3 DOWNSTREAM Cyp4ac2 INTRON tkv
2R	18492759	2R_18492759_SNP [dm3] 2R_22605254_SNP [dm6]	A	G	1.101e^-4	0.854	UPSTREAM RpS16 INTRON CG4294	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	16494795	2L_16494795_SNP [dm3] 2L_16494795_SNP [dm6]	C	T	1.111e^-4	0.854	INTRON Tpr2	TF binding site mE1_TFBS_bab1
2L	5269051	2L_5269051_SNP [dm3] 2L_5269051_SNP [dm6]	T	C	1.118e^-4	0.854	SPLICE_SITE_REGION Cyp4ac3 DOWNSTREAM Cyp4ac2 INTRON tkv & 1 other
2R	12339744	2R_12339744_SNP [dm3] 2R_16452239_SNP [dm6]	G	T	1.121e^-4	0.854	INTERGENIC
2L	12337448	2L_12337448_SNP [dm3] 2L_12337448_SNP [dm6]	T	G	1.123e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8073244	X_8073244_SNP [dm3] X_8179211_SNP [dm6]	G	T	1.138e^-4	0.854	UTR_5_PRIME sdt INTRON sdt
3L	17319237	3L_17319237_SNP [dm3] 3L_17326137_SNP [dm6]	G	A	1.146e^-4	0.854	UPSTREAM CG13725 INTERGENIC
2R	12976219	2R_12976219_SNP [dm3] 2R_17088714_SNP [dm6]	A	G	1.160e^-4	0.854	UTR_3_PRIME Sply
2L	8529492	2L_8529492_SNP [dm3] 2L_8529492_SNP [dm6]	T	A	1.161e^-4	0.854	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
3L	12058930	3L_12058930_SNP [dm3] 3L_12065830_SNP [dm6]	T	C	1.166e^-4	0.854	UPSTREAM rols INTERGENIC
3R	9290930	3R_9290930_SNP [dm3] 3R_13465208_SNP [dm6]	C	T	1.173e^-4	0.854	UPSTREAM mir-252 DOWNSTREAM CR17025 INTRON CR17025
3R	9283658	3R_9283658_INS [dm3] 3R_13457936_INS [dm6]	A	AAAA	1.176e^-4	0.854	INTRON CG14372 EXON CR17025
3R	19882905	3R_19882905_SNP [dm3] 3R_24057183_SNP [dm6]	T	C	1.176e^-4	0.854	UTR_5_PRIME Hsp68	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_ttk
3R	8907001	3R_8907001_SNP [dm3] 3R_13081279_SNP [dm6]	G	T	1.179e^-4	0.854	INTERGENIC
3L	15776433	3L_15776433_SNP [dm3] 3L_15783333_SNP [dm6]	C	T	1.185e^-4	0.854	INTERGENIC
2R	3069716	2R_3069716_SNP [dm3] 2R_7182211_SNP [dm6]	G	C	1.185e^-4	0.854	SYNONYMOUS_CODING CG30385 UPSTREAM CG30384 INTRON pk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	21888625	X_21888625_SNP [dm3] X_22486789_SNP [dm6]	T	C	1.187e^-4	0.854	UPSTREAM l_1_G0196 DOWNSTREAM Cp110 INTRON Cp110
2R	12890404	2R_12890404_SNP [dm3] 2R_17002899_SNP [dm6]	T	C	1.190e^-4	0.854	SYNONYMOUS_CODING CG6796 UPSTREAM ste24a DOWNSTREAM NiPp1	TF binding site mE1_TFBS_sens
3L	3289480	3L_3289480_SNP [dm3] 3L_3289480_SNP [dm6]	G	A	1.192e^-4	0.854	INTRON CG12017
2R	18055946	2R_18055946_SNP [dm3] 2R_22168441_SNP [dm6]	G	A	1.193e^-4	0.854	INTRON a
2R	12845054	2R_12845054_SNP [dm3] 2R_16957549_SNP [dm6]	A	T	1.193e^-4	0.854	UTR_5_PRIME CG6665 DOWNSTREAM PIG-V	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	9091448	2L_9091448_SNP [dm3] 2L_9091448_SNP [dm6]	G	A	1.201e^-4	0.854	INTERGENIC
2L	6515493	2L_6515493_SNP [dm3] 2L_6515493_SNP [dm6]	A	G	1.202e^-4	0.854	INTRON CG31637
3R	1227249	3R_1227249_SNP [dm3] 3R_5401527_SNP [dm6]	T	G	1.205e^-4	0.854	SYNONYMOUS_CODING CG2663	TF binding site mE1_TFBS_cad
3R	9331765	3R_9331765_SNP [dm3] 3R_13506043_SNP [dm6]	C	A	1.207e^-4	0.854	INTERGENIC
3R	23727604	3R_23727604_SNP [dm3] 3R_27901882_SNP [dm6]	C	T	1.208e^-4	0.854	INTRON CG34353
3L	2810142	3L_2810142_SNP [dm3] 3L_2810142_SNP [dm6]	G	A	1.209e^-4	0.854	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	20222996	X_20222996_SNP [dm3] X_20351969_SNP [dm6]	C	T	1.219e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18236215	2R_18236215_SNP [dm3] 2R_22348710_SNP [dm6]	A	C	1.224e^-4	0.854	NON_SYNONYMOUS_CODING CG11298 INTRON Liprin-gamma
3R	25410811	3R_25410811_SNP [dm3] 3R_29585089_SNP [dm6]	T	A	1.228e^-4	0.854	INTERGENIC
3L	3047006	3L_3047006_SNP [dm3] 3L_3047006_SNP [dm6]	C	T	1.233e^-4	0.854	UPSTREAM Sk2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	12947560	2L_12947560_SNP [dm3] 2L_12947560_SNP [dm6]	G	A	1.234e^-4	0.854	INTERGENIC
2L	4432983	2L_4432983_SNP [dm3] 2L_4432983_SNP [dm6]	G	A	1.237e^-4	0.854	UPSTREAM CG34177 & 1 other INTRON CG15431
2L	11872256	2L_11872256_SNP [dm3] 2L_11872256_SNP [dm6]	T	A	1.239e^-4	0.854	INTRON Pde1c
X	15553004	X_15553004_SNP [dm3] X_15658971_SNP [dm6]	C	T	1.246e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
3L	14106439	3L_14106439_SNP [dm3] 3L_14113339_SNP [dm6]	C	T	1.247e^-4	0.854	SYNONYMOUS_CODING Sox21b
3R	20274845	3R_20274845_SNP [dm3] 3R_24449123_SNP [dm6]	A	T	1.253e^-4	0.854	INTRON nAChRalpha1
2L	11872243	2L_11872243_SNP [dm3] 2L_11872243_SNP [dm6]	C	G	1.256e^-4	0.854	INTRON Pde1c
3R	24202211	3R_24202211_SNP [dm3] 3R_28376489_SNP [dm6]	T	C	1.267e^-4	0.854	INTERGENIC
2L	7046464	2L_7046464_SNP [dm3] 2L_7046464_SNP [dm6]	T	C	1.272e^-4	0.854	NON_SYNONYMOUS_CODING milt INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16994239	3R_16994239_SNP [dm3] 3R_21168517_SNP [dm6]	C	T	1.275e^-4	0.854	UPSTREAM Snmp1 INTRON SNF4Agamma
3R	20496113	3R_20496113_SNP [dm3] 3R_24670391_SNP [dm6]	G	A	1.281e^-4	0.854	INTRON slo	TF binding site mE1_TFBS_cad
3R	10318540	3R_10318540_SNP [dm3] 3R_14492818_SNP [dm6]	A	C	1.282e^-4	0.854	INTERGENIC
3L	15746160	3L_15746160_SNP [dm3] 3L_15753060_SNP [dm6]	T	G	1.282e^-4	0.854	INTERGENIC
3R	10694893	3R_10694893_SNP [dm3] 3R_14869171_SNP [dm6]	T	G	1.285e^-4	0.854	INTRON btsz
3R	23329373	3R_23329373_SNP [dm3] 3R_27503651_SNP [dm6]	G	A	1.287e^-4	0.854	UPSTREAM CG5402 INTERGENIC
3R	9443387	3R_9443387_SNP [dm3] 3R_13617665_SNP [dm6]	T	A	1.291e^-4	0.854	DOWNSTREAM CR45680 INTERGENIC
X	15432268	X_15432268_SNP [dm3] X_15538235_SNP [dm6]	T	C	1.293e^-4	0.854	INTRON Ac13E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	1399095	2R_1399095_SNP [dm3] 2R_5511590_SNP [dm6]	A	T	1.298e^-4	0.854	INTRON CG30438	transposable element FlyBase
2R	12844922	2R_12844922_SNP [dm3] 2R_16957417_SNP [dm6]	T	C	1.300e^-4	0.854	UPSTREAM CG6665 DOWNSTREAM PIG-V INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sbb
2L	9387007	2L_9387007_DEL [dm3] 2L_9387007_DEL [dm6]	AA	A	1.309e^-4	0.854	UPSTREAM Aldh INTRON Shawl
2L	9088189	2L_9088189_SNP [dm3] 2L_9088189_SNP [dm6]	G	A	1.310e^-4	0.854	SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1440383	2L_1440383_SNP [dm3] 2L_1440383_SNP [dm6]	A	G	1.311e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2L	11461937	2L_11461937_SNP [dm3] 2L_11461937_SNP [dm6]	G	A	1.315e^-4	0.854	INTERGENIC
3R	26626230	3R_26626230_SNP [dm3] 3R_30800508_SNP [dm6]	A	T	1.315e^-4	0.854	UTR_5_PRIME wts
X	22153167	X_22153167_SNP [dm3] X_22751331_SNP [dm6]	T	C	1.329e^-4	0.854	INTRON CR44997	TF binding site BDTNP1_TFBS_twi
3L	12096108	3L_12096108_SNP [dm3] 3L_12103008_SNP [dm6]	C	T	1.347e^-4	0.854	INTERGENIC
2L	12337233	2L_12337233_SNP [dm3] 2L_12337233_SNP [dm6]	T	C	1.350e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14076479	3L_14076479_SNP [dm3] 3L_14083379_SNP [dm6]	C	A	1.352e^-4	0.854	UPSTREAM CG8100 DOWNSTREAM btl INTERGENIC
2L	6760755	2L_6760755_SNP [dm3] 2L_6760755_SNP [dm6]	T	A	1.364e^-4	0.854	INTRON CG11321	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25087514	3R_25087514_SNP [dm3] 3R_29261792_SNP [dm6]	C	A	1.370e^-4	0.854	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	9744803	3L_9744803_SNP [dm3] 3L_9751703_SNP [dm6]	A	T	1.382e^-4	0.854	UPSTREAM CG42268 INTRON CG42268	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	17427048	3L_17427048_SNP [dm3] 3L_17433948_SNP [dm6]	G	A	1.389e^-4	0.854	SYNONYMOUS_CODING CG32176 UPSTREAM frc & 1 other DOWNSTREAM CG12229	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15190090	2L_15190090_SNP [dm3] 2L_15190090_SNP [dm6]	C	A	1.396e^-4	0.854	INTRON CG4168
X	7758529	X_7758529_SNP [dm3] X_7864496_SNP [dm6]	A	G	1.396e^-4	0.854	DOWNSTREAM Ir7b INTERGENIC
2L	17411851	2L_17411851_SNP [dm3] 2L_17411851_SNP [dm6]	C	T	1.397e^-4	0.854	SYNONYMOUS_CODING CG31803 INTRON CG15141	TF binding site BDTNP1_TFBS_twi
2L	17411860	2L_17411860_SNP [dm3] 2L_17411860_SNP [dm6]	T	G	1.397e^-4	0.854	SYNONYMOUS_CODING CG31803 INTRON CG15141	TF binding site BDTNP1_TFBS_twi
2L	1921782	2L_1921782_SNP [dm3] 2L_1921782_SNP [dm6]	T	C	1.399e^-4	0.854	INTRON CG7337
2R	737387	2R_737387_SNP [dm3] 2R_4849882_SNP [dm6]	G	T	1.403e^-4	0.854	INTERGENIC	TF binding site mE1_TFBS_inv transposable element FlyBase
2L	14575883	2L_14575883_DEL [dm3] 2L_14575883_DEL [dm6]	CGGGGCATTTATCAAT...	C	1.408e^-4	0.854	UPSTREAM CR44856 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19165169	2R_19165169_SNP [dm3] 2R_23277646_SNP [dm6]	A	T	1.408e^-4	0.854	INTERGENIC
3L	15746193	3L_15746193_SNP [dm3] 3L_15753093_SNP [dm6]	C	A	1.410e^-4	0.854	INTERGENIC
3R	9150871	3R_9150871_SNP [dm3] 3R_13325149_SNP [dm6]	A	C	1.414e^-4	0.854	INTERGENIC
2L	3014218	2L_3014218_SNP [dm3] 2L_3014218_SNP [dm6]	A	T	1.414e^-4	0.854	SYNONYMOUS_CODING CG17265
2L	14059577	2L_14059577_INS [dm3] 2L_14059577_INS [dm6]	A	AA	1.420e^-4	0.854	INTRON nAChRalpha5
3L	3009237	3L_3009237_SNP [dm3] 3L_3009237_SNP [dm6]	C	A	1.420e^-4	0.854	SYNONYMOUS_CODING FMRFaR	TF binding site mE1_TFBS_cad
3L	15774982	3L_15774982_SNP [dm3] 3L_15781882_SNP [dm6]	A	C	1.421e^-4	0.854	INTERGENIC
X	702651	X_702651_SNP [dm3] X_808618_SNP [dm6]	G	T	1.425e^-4	0.854	UTR_3_PRIME CG43867 DOWNSTREAM Sec22
3R	9157896	3R_9157896_SNP [dm3] 3R_13332174_SNP [dm6]	A	G	1.426e^-4	0.854	SYNONYMOUS_CODING PK2-R2
3R	9290158	3R_9290158_SNP [dm3] 3R_13464436_SNP [dm6]	T	C	1.432e^-4	0.854	UPSTREAM mir-252 DOWNSTREAM CG14372 INTRON CR17025
2R	8815736	2R_8815736_SNP [dm3] 2R_12928231_SNP [dm6]	T	A	1.435e^-4	0.854	UPSTREAM sug INTRON sug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17411863	2L_17411863_SNP [dm3] 2L_17411863_SNP [dm6]	G	A	1.436e^-4	0.854	SYNONYMOUS_CODING CG31803 INTRON CG15141	TF binding site BDTNP1_TFBS_twi
2L	8507578	2L_8507578_SNP [dm3] 2L_8507578_SNP [dm6]	T	A	1.440e^-4	0.854	UPSTREAM Dh31 INTERGENIC
3L	13308923	3L_13308923_SNP [dm3] 3L_13315823_SNP [dm6]	G	A	1.440e^-4	0.854	INTERGENIC
2R	14398330	2R_14398330_SNP [dm3] 2R_18510825_SNP [dm6]	G	C	1.444e^-4	0.854	INTERGENIC
2L	6513328	2L_6513328_SNP [dm3] 2L_6513328_SNP [dm6]	A	G	1.455e^-4	0.854	INTRON CG31637	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17954273	3R_17954273_SNP [dm3] 3R_22128551_SNP [dm6]	C	T	1.457e^-4	0.854	INTRON CG42390	TF binding site mE1_TFBS_inv
2R	7281583	2R_7281583_SNP [dm3] 2R_11394078_SNP [dm6]	G	T	1.468e^-4	0.854	UPSTREAM tRNA:CR30257 INTRON sprt	TF binding site mE1_TFBS_HSA
3L	12061657	3L_12061657_SNP [dm3] 3L_12068557_SNP [dm6]	A	C	1.470e^-4	0.854	SYNONYMOUS_CODING Sema-5c
3R	10694863	3R_10694863_SNP [dm3] 3R_14869141_SNP [dm6]	G	A	1.477e^-4	0.854	INTRON btsz
2L	14576439	2L_14576439_SNP [dm3] 2L_14576439_SNP [dm6]	C	T	1.482e^-4	0.854	UPSTREAM CR44856 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	6736715	3L_6736715_SNP [dm3] 3L_6743615_SNP [dm6]	A	G	1.485e^-4	0.854	UPSTREAM dikar DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
2R	6545110	2R_6545110_SNP [dm3] 2R_10657605_SNP [dm6]	C	A	1.486e^-4	0.854	UPSTREAM CR44452 INTERGENIC
3R	10347864	3R_10347864_SNP [dm3] 3R_14522142_SNP [dm6]	A	T	1.486e^-4	0.854	INTRON Pde6 & 1 other
3L	5822406	3L_5822406_SNP [dm3] 3L_5829306_SNP [dm6]	G	T	1.490e^-4	0.854	INTRON vn
3R	11004639	3R_11004639_SNP [dm3] 3R_15178917_SNP [dm6]	T	C	1.499e^-4	0.854	INTRON Gyc88E & 1 other
3L	8774163	3L_8774163_SNP [dm3] 3L_8781063_SNP [dm6]	T	A	1.502e^-4	0.854	INTRON Fhos
3L	15776429	3L_15776429_SNP [dm3] 3L_15783329_SNP [dm6]	T	C	1.507e^-4	0.854	INTERGENIC
2L	9091556	2L_9091556_SNP [dm3] 2L_9091556_SNP [dm6]	G	T	1.507e^-4	0.854	INTERGENIC
3R	10318488	3R_10318488_SNP [dm3] 3R_14492766_SNP [dm6]	A	T	1.511e^-4	0.854	INTERGENIC
3R	9290039	3R_9290039_SNP [dm3] 3R_13464317_SNP [dm6]	G	A	1.514e^-4	0.854	UPSTREAM mir-252 DOWNSTREAM CG14372 INTRON CR17025
X	12541473	X_12541473_SNP [dm3] X_12647440_SNP [dm6]	T	C	1.516e^-4	0.854	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl
2L	5726249	2L_5726249_SNP [dm3] 2L_5726249_SNP [dm6]	C	A	1.518e^-4	0.854	DOWNSTREAM CG14006 INTRON CG11030
2L	6760750	2L_6760750_SNP [dm3] 2L_6760750_SNP [dm6]	T	G	1.524e^-4	0.854	INTRON CG11321	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6760751	2L_6760751_SNP [dm3] 2L_6760751_SNP [dm6]	T	A	1.524e^-4	0.854	INTRON CG11321	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25433843	3R_25433843_SNP [dm3] 3R_29608121_SNP [dm6]	C	G	1.534e^-4	0.854	UPSTREAM Diedel2 INTRON alph
2R	3009968	2R_3009968_SNP [dm3] 2R_7122463_SNP [dm6]	G	A	1.541e^-4	0.854	INTRON esn
3L	5339691	3L_5339691_DEL [dm3] 3L_5346591_DEL [dm6]	TATACA	T	1.544e^-4	0.854	INTRON lama
2R	14124645	2R_14124645_SNP [dm3] 2R_18237140_SNP [dm6]	A	T	1.546e^-4	0.854	DOWNSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	9986800	3R_9986800_SNP [dm3] 3R_14161078_SNP [dm6]	A	T	1.550e^-4	0.854	UPSTREAM CG31327 INTERGENIC
3R	25986348	3R_25986348_SNP [dm3] 3R_30160626_SNP [dm6]	C	T	1.552e^-4	0.854	UPSTREAM CG11498 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3044916	3L_3044916_SNP [dm3] 3L_3044916_SNP [dm6]	G	T	1.558e^-4	0.854	DOWNSTREAM Jafrac2 INTRON scramb2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23199029	3R_23199029_SNP [dm3] 3R_27373307_SNP [dm6]	C	A	1.564e^-4	0.854	DOWNSTREAM CG42534 INTERGENIC
3L	3044898	3L_3044898_SNP [dm3] 3L_3044898_SNP [dm6]	A	G	1.564e^-4	0.854	DOWNSTREAM Jafrac2 INTRON scramb2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8529430	2L_8529430_SNP [dm3] 2L_8529430_SNP [dm6]	T	A	1.567e^-4	0.854	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
2L	9592133	2L_9592133_SNP [dm3] 2L_9592133_SNP [dm6]	T	A	1.574e^-4	0.854	DOWNSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
2R	2764654	2R_2764654_SNP [dm3] 2R_6877149_SNP [dm6]	G	C	1.579e^-4	0.854	INTRON Spn42Da & 1 other
2L	21311013	2L_21311013_SNP [dm3] 2L_21311013_SNP [dm6]	G	A	1.581e^-4	0.854	UTR_5_PRIME crc UPSTREAM Mio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12337436	2L_12337436_SNP [dm3] 2L_12337436_SNP [dm6]	T	G	1.587e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4097741	3R_4097741_SNP [dm3] 3R_8272019_SNP [dm6]	T	C	1.588e^-4	0.854	INTERGENIC	regulatory region REDfly_CRMs
3L	492057	3L_492057_INS [dm3] 3L_492057_INS [dm6]	C	CTCC	1.588e^-4	0.854	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	15432124	X_15432124_INS [dm3] X_15538091_INS [dm6]	G	GGCTGG	1.590e^-4	0.854	INTRON Ac13E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16519172	2L_16519172_SNP [dm3] 2L_16519172_SNP [dm6]	A	T	1.591e^-4	0.854	INTRON CG5953
2R	13768314	2R_13768314_SNP [dm3] 2R_17880809_SNP [dm6]	G	T	1.593e^-4	0.854	NON_SYNONYMOUS_CODING CG30110 UPSTREAM CG30325 INTRON Elk	TF binding site mE1_TFBS_HSA
2R	17418772	2R_17418772_SNP [dm3] 2R_21531267_SNP [dm6]	C	T	1.599e^-4	0.854	DOWNSTREAM CR44725 INTRON Egfr	TF binding site mE1_TFBS_chinmo
3R	2639009	3R_2639009_SNP [dm3] 3R_6813287_SNP [dm6]	G	T	1.602e^-4	0.854	INTRON CR42651	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4905734	2R_4905734_SNP [dm3] 2R_9018229_SNP [dm6]	A	T	1.603e^-4	0.854	DOWNSTREAM CG8170 INTRON CG13747
2R	9898784	2R_9898784_SNP [dm3] 2R_14011279_SNP [dm6]	C	T	1.616e^-4	0.854	INTRON mam
3R	9446540	3R_9446540_SNP [dm3] 3R_13620818_SNP [dm6]	G	C	1.620e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8421916	X_8421916_SNP [dm3] X_8527883_SNP [dm6]	C	T	1.624e^-4	0.854	NON_SYNONYMOUS_CODING PIP82 INTRON Nrg	TF binding site mE1_TFBS_chinmo
3L	14210525	3L_14210525_INS [dm3] 3L_14217425_INS [dm6]	T	TT	1.641e^-4	0.854	UPSTREAM CG7768 INTRON nuf
2R	6618669	2R_6618669_SNP [dm3] 2R_10731164_SNP [dm6]	A	C	1.641e^-4	0.854	UPSTREAM CG7220 & 1 other INTRON CG12338	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	9885770	X_9885770_SNP [dm3] X_9991737_SNP [dm6]	T	C	1.642e^-4	0.854	INTRON CG32694
X	9885778	X_9885778_INS [dm3] X_9991745_INS [dm6]	T	TTAT	1.642e^-4	0.854	INTRON CG32694
3L	12061769	3L_12061769_SNP [dm3] 3L_12068669_SNP [dm6]	C	G	1.651e^-4	0.854	INTRON Sema-5c
3R	19449581	3R_19449581_SNP [dm3] 3R_23623859_SNP [dm6]	C	T	1.655e^-4	0.854	INTRON CG31145
2L	3435180	2L_3435180_SNP [dm3] 2L_3435180_SNP [dm6]	T	G	1.659e^-4	0.854	INTERGENIC
2L	21298956	2L_21298956_SNP [dm3] 2L_21298956_SNP [dm6]	G	T	1.664e^-4	0.854	INTRON Mio
2R	19325192	2R_19325192_SNP [dm3] 2R_23437669_SNP [dm6]	A	G	1.671e^-4	0.854	INTERGENIC
3L	14085150	3L_14085150_SNP [dm3] 3L_14092050_SNP [dm6]	T	G	1.687e^-4	0.854	INTERGENIC
2R	6545114	2R_6545114_DEL [dm3] 2R_10657609_DEL [dm6]	CTTTAAAAAGTT...	C	1.688e^-4	0.854	UPSTREAM CR44452 INTERGENIC
2R	3394895	2R_3394895_SNP [dm3] 2R_7507390_SNP [dm6]	T	A	1.692e^-4	0.854	INTRON didum	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2810162	3L_2810162_SNP [dm3] 3L_2810162_SNP [dm6]	A	T	1.692e^-4	0.854	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	10920177	3L_10920177_SNP [dm3] 3L_10927077_SNP [dm6]	A	G	1.697e^-4	0.854	INTERGENIC
2R	18236115	2R_18236115_SNP [dm3] 2R_22348610_SNP [dm6]	A	G	1.698e^-4	0.854	SYNONYMOUS_CODING CG11298 INTRON Liprin-gamma
2L	10903505	2L_10903505_SNP [dm3] 2L_10903505_SNP [dm6]	A	C	1.701e^-4	0.854	DOWNSTREAM CR45724 INTERGENIC
2R	12890344	2R_12890344_SNP [dm3] 2R_17002839_SNP [dm6]	T	C	1.744e^-4	0.854	SYNONYMOUS_CODING CG6796 UPSTREAM ste24a DOWNSTREAM NiPp1	TF binding site mE1_TFBS_sens
3R	15749070	3R_15749070_SNP [dm3] 3R_19923348_SNP [dm6]	A	G	1.746e^-4	0.854	SYNONYMOUS_CODING CG4462	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9295979	3R_9295979_SNP [dm3] 3R_13470257_SNP [dm6]	A	G	1.748e^-4	0.854	INTERGENIC	TF binding site mE1_TFBS_cad
2R	2999599	2R_2999599_SNP [dm3] 2R_7112094_SNP [dm6]	G	A	1.759e^-4	0.854	INTRON esn	TF binding site mE1_TFBS_inv
3R	17747579	3R_17747579_SNP [dm3] 3R_21921857_SNP [dm6]	A	G	1.767e^-4	0.854	INTERGENIC
3R	23199030	3R_23199030_SNP [dm3] 3R_27373308_SNP [dm6]	G	T	1.771e^-4	0.854	DOWNSTREAM CG42534 INTERGENIC
2L	15228333	2L_15228333_SNP [dm3] 2L_15228333_SNP [dm6]	T	C	1.776e^-4	0.854	DOWNSTREAM ZnT35C INTERGENIC
2L	3870261	2L_3870261_SNP [dm3] 2L_3870261_SNP [dm6]	T	A	1.781e^-4	0.854	SYNONYMOUS_CODING Cep97	TF binding site mE1_TFBS_sens
2R	16662064	2R_16662064_SNP [dm3] 2R_20774559_SNP [dm6]	C	T	1.782e^-4	0.854	NON_SYNONYMOUS_CODING CG13443	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10345789	2L_10345789_SNP [dm3] 2L_10345789_SNP [dm6]	C	T	1.783e^-4	0.854	SYNONYMOUS_CODING CG5022
3L	2821915	3L_2821915_SNP [dm3] 3L_2821915_SNP [dm6]	A	T	1.794e^-4	0.854	UPSTREAM CG43444 INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6736512	3L_6736512_SNP [dm3] 3L_6743412_SNP [dm6]	A	C	1.798e^-4	0.854	UPSTREAM dikar INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk
2R	17150108	2R_17150108_INS [dm3] 2R_21262603_INS [dm6]	C	CGGGCC	1.802e^-4	0.854	INTRON Rgk3
3R	17627839	3R_17627839_SNP [dm3] 3R_21802117_SNP [dm6]	G	T	1.820e^-4	0.854	INTRON CASK
3L	10201091	3L_10201091_SNP [dm3] 3L_10207991_SNP [dm6]	A	G	1.824e^-4	0.854	INTERGENIC
3L	13310162	3L_13310162_SNP [dm3] 3L_13317062_SNP [dm6]	C	T	1.827e^-4	0.854	INTERGENIC
3R	18470594	3R_18470594_SNP [dm3] 3R_22644872_SNP [dm6]	C	T	1.841e^-4	0.854	INTRON CG45058
3L	23255717	3L_23255717_SNP [dm3] 3L_23262617_SNP [dm6]	T	G	1.841e^-4	0.854	INTRON nAChRalpha4
2L	13666153	2L_13666153_SNP [dm3] 2L_13666153_SNP [dm6]	C	T	1.844e^-4	0.854	INTRON CG18507	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6760454	2L_6760454_SNP [dm3] 2L_6760454_SNP [dm6]	A	G	1.846e^-4	0.854	UPSTREAM CG11322 INTRON CG11321
2L	6360464	2L_6360464_SNP [dm3] 2L_6360464_SNP [dm6]	A	C	1.846e^-4	0.854	UPSTREAM CR44777 EXON CR44778
3L	9931745	3L_9931745_SNP [dm3] 3L_9938645_SNP [dm6]	C	T	1.847e^-4	0.854	INTRON CG34356
3R	15218268	3R_15218268_SNP [dm3] 3R_19392546_SNP [dm6]	G	T	1.867e^-4	0.854	UPSTREAM CG3739 DOWNSTREAM CG18493 INTRON Ino80	TF binding site mE1_TFBS_inv
2R	17557502	2R_17557502_INS [dm3] 2R_21669997_INS [dm6]	A	ATA	1.876e^-4	0.854	UPSTREAM NC2alpha & 4 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19597961	2R_19597961_SNP [dm3] 2R_23710438_SNP [dm6]	T	G	1.877e^-4	0.854	UPSTREAM l_2_not DOWNSTREAM CR45326 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	2789276	3R_2789276_SNP [dm3] 3R_6963554_SNP [dm6]	A	G	1.878e^-4	0.854	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	24529380	3L_24529380_DEL [dm3] 3L_24536281_DEL [dm6]	TT	T	1.879e^-4	0.854	UPSTREAM mRpS5 DOWNSTREAM CR12460 INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12337015	2L_12337015_SNP [dm3] 2L_12337015_SNP [dm6]	A	T	1.881e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2707291	2L_2707291_SNP [dm3] 2L_2707291_SNP [dm6]	T	A	1.889e^-4	0.854	INTRON CG31690
3R	9318044	3R_9318044_SNP [dm3] 3R_13492322_SNP [dm6]	T	A	1.889e^-4	0.854	INTERGENIC
3R	26118746	3R_26118746_SNP [dm3] 3R_30293024_SNP [dm6]	C	T	1.891e^-4	0.854	INTRON hdc
3L	2829183	3L_2829183_SNP [dm3] 3L_2829183_SNP [dm6]	G	T	1.891e^-4	0.854	INTRON CG43444
3R	9440915	3R_9440915_SNP [dm3] 3R_13615193_SNP [dm6]	T	C	1.899e^-4	0.854	UPSTREAM CG9269 INTERGENIC
3L	10773187	3L_10773187_SNP [dm3] 3L_10780087_SNP [dm6]	A	G	1.902e^-4	0.854	INTERGENIC
X	8073135	X_8073135_SNP [dm3] X_8179102_SNP [dm6]	C	T	1.905e^-4	0.854	UTR_5_PRIME sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl
2L	11896892	2L_11896892_SNP [dm3] 2L_11896892_SNP [dm6]	A	C	1.909e^-4	0.854	UPSTREAM Pde1c INTRON Pde1c
2L	3796820	2L_3796820_SNP [dm3] 2L_3796820_SNP [dm6]	G	A	1.925e^-4	0.854	SYNONYMOUS_CODING CG3921
3L	21061106	3L_21061106_DEL [dm3] 3L_21068006_DEL [dm6]	AAATTCAATTTGAATATCAT...	A	1.938e^-4	0.854	UTR_5_PRIME siz INTRON siz	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10292153	3R_10292153_SNP [dm3] 3R_14466431_SNP [dm6]	G	T	1.939e^-4	0.854	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9440237	3R_9440237_DEL [dm3] 3R_13614515_DEL [dm6]	GTT	G	1.942e^-4	0.854	INTERGENIC
2R	12871345	2R_12871345_SNP [dm3] 2R_16983840_SNP [dm6]	A	G	1.945e^-4	0.854	INTRON Cbp53E
3R	6728230	3R_6728230_SNP [dm3] 3R_10902508_SNP [dm6]	C	A	1.953e^-4	0.854	INTERGENIC
2L	16506197	2L_16506197_SNP [dm3] 2L_16506197_SNP [dm6]	C	T	1.956e^-4	0.854	SYNONYMOUS_CODING Tpr2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8339153	X_8339153_SNP [dm3] X_8445120_SNP [dm6]	C	G	1.961e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5269182	2L_5269182_SNP [dm3] 2L_5269182_SNP [dm6]	G	A	1.963e^-4	0.854	DOWNSTREAM Cyp4ac2 INTRON tkv & 1 other
2R	17734770	2R_17734770_SNP [dm3] 2R_21847265_SNP [dm6]	A	G	1.965e^-4	0.854	INTERGENIC
2L	9090298	2L_9090298_SNP [dm3] 2L_9090298_SNP [dm6]	T	A	1.969e^-4	0.854	DOWNSTREAM Toll-4 INTERGENIC
3L	6270223	3L_6270223_SNP [dm3] 3L_6277123_SNP [dm6]	T	C	1.976e^-4	0.854	DOWNSTREAM CG43168 INTERGENIC
2R	17796779	2R_17796779_SNP [dm3] 2R_21909274_SNP [dm6]	C	T	1.980e^-4	0.854	INTRON Fili
3R	6280314	3R_6280314_SNP [dm3] 3R_10454592_SNP [dm6]	T	C	1.981e^-4	0.854	INTERGENIC
2L	6360499	2L_6360499_SNP [dm3] 2L_6360499_SNP [dm6]	A	G	1.983e^-4	0.854	UPSTREAM CR44777 EXON CR44778
3R	9251323	3R_9251323_SNP [dm3] 3R_13425601_SNP [dm6]	T	C	1.987e^-4	0.854	UPSTREAM Act87E DOWNSTREAM CR45591 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16507942	2L_16507942_SNP [dm3] 2L_16507942_SNP [dm6]	A	G	1.988e^-4	0.854	DOWNSTREAM CG5953 & 1 other INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
X	17051045	X_17051045_SNP [dm3] X_17157012_SNP [dm6]	C	T	1.994e^-4	0.854	SYNONYMOUS_CODING xmas-2	TF binding site mE1_TFBS_chinmo
2R	17391276	2R_17391276_DEL [dm3] 2R_21503771_DEL [dm6]	GATGTTTAACTTTCCTG...	G	1.995e^-4	0.854	INTRON MESK2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	17734780	2R_17734780_SNP [dm3] 2R_21847275_SNP [dm6]	A	T	2.001e^-4	0.854	INTERGENIC
3R	9441165	3R_9441165_SNP [dm3] 3R_13615443_SNP [dm6]	T	A	2.008e^-4	0.854	UPSTREAM CG9269 INTERGENIC
3L	2773088	3L_2773088_SNP [dm3] 3L_2773088_SNP [dm6]	A	G	2.011e^-4	0.854	UPSTREAM CG9977 INTRON CG12093	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13236888	2L_13236888_SNP [dm3] 2L_13236888_SNP [dm6]	C	T	2.013e^-4	0.854	INTRON CG5867
2L	14416691	2L_14416691_INS [dm3] 2L_14416691_INS [dm6]	T	TATTAAAGAGATCGCGTCT...	2.023e^-4	0.854	DOWNSTREAM Pburs INTERGENIC
3R	15147446	3R_15147446_DEL [dm3] 3R_19321724_DEL [dm6]	AG	A	2.038e^-4	0.854	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	17292614	3R_17292614_INS [dm3] 3R_21466892_INS [dm6]	C	CC	2.042e^-4	0.854	DOWNSTREAM CR43453 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	14417139	2L_14417139_SNP [dm3] 2L_14417139_SNP [dm6]	G	A	2.068e^-4	0.854	SYNONYMOUS_CODING Pburs	TF binding site mE1_TFBS_HSA
3R	26150747	3R_26150747_SNP [dm3] 3R_30325025_SNP [dm6]	G	T	2.069e^-4	0.854	INTRON hdc
3L	4314528	3L_4314528_SNP [dm3] 3L_4314528_SNP [dm6]	G	A	2.076e^-4	0.854	SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_sens
3L	21197778	3L_21197778_INS [dm3] 3L_21204678_INS [dm6]	A	AA	2.082e^-4	0.854	UPSTREAM CG10512 INTRON CG10512
X	20234318	X_20234318_SNP [dm3] X_20363291_SNP [dm6]	G	T	2.086e^-4	0.854	INTERGENIC
3L	5460205	3L_5460205_SNP [dm3] 3L_5467105_SNP [dm6]	T	C	2.091e^-4	0.854	INTERGENIC
3R	26211177	3R_26211177_SNP [dm3] 3R_30385455_SNP [dm6]	T	A	2.095e^-4	0.854	DOWNSTREAM Fer1HCH INTERGENIC
2R	18272673	2R_18272673_SNP [dm3] 2R_22385168_SNP [dm6]	C	A	2.101e^-4	0.854	INTRON CG13506
3L	23934850	3L_23934850_SNP [dm3] 3L_23941750_SNP [dm6]	A	C	2.117e^-4	0.854	INTRON CG40470
3R	3700206	3R_3700206_SNP [dm3] 3R_7874484_SNP [dm6]	A	G	2.121e^-4	0.854	INTRON CG17816
2R	19113986	2R_19113986_SNP [dm3] 2R_23226463_SNP [dm6]	C	A	2.132e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13019814	3L_13019814_SNP [dm3] 3L_13026714_SNP [dm6]	T	G	2.134e^-4	0.854	UPSTREAM Zmynd10 INTERGENIC
3L	9931797	3L_9931797_SNP [dm3] 3L_9938697_SNP [dm6]	A	C	2.136e^-4	0.854	INTRON CG34356
2R	6983406	2R_6983406_SNP [dm3] 2R_11095901_SNP [dm6]	A	G	2.145e^-4	0.854	INTRON luna	TF binding site BDTNP1_TFBS_twi
3R	17747602	3R_17747602_SNP [dm3] 3R_21921880_SNP [dm6]	C	A	2.153e^-4	0.854	INTERGENIC
2L	9885414	2L_9885414_SNP [dm3] 2L_9885414_SNP [dm6]	C	A	2.176e^-4	0.854	INTRON nAChRalpha6
2L	4434203	2L_4434203_SNP [dm3] 2L_4434203_SNP [dm6]	C	A	2.179e^-4	0.854	SYNONYMOUS_CODING CG34177 UTR_5_PRIME CG34178 UPSTREAM CG34178 INTRON CG15431
3L	9744799	3L_9744799_SNP [dm3] 3L_9751699_SNP [dm6]	C	A	2.181e^-4	0.854	UPSTREAM CG42268 INTRON CG42268	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	9454342	2L_9454342_SNP [dm3] 2L_9454342_SNP [dm6]	T	C	2.187e^-4	0.854	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	13310157	3L_13310157_SNP [dm3] 3L_13317057_SNP [dm6]	G	A	2.192e^-4	0.854	INTERGENIC
3R	10052747	3R_10052747_SNP [dm3] 3R_14227025_SNP [dm6]	C	A	2.197e^-4	0.854	UPSTREAM CG9631 INTERGENIC
3R	26684250	3R_26684250_SNP [dm3] 3R_30858528_SNP [dm6]	G	T	2.199e^-4	0.854	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	16507951	2L_16507951_SNP [dm3] 2L_16507951_SNP [dm6]	A	G	2.201e^-4	0.854	DOWNSTREAM CG5953 & 1 other INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2R	12977177	2R_12977177_SNP [dm3] 2R_17089672_SNP [dm6]	C	A	2.205e^-4	0.854	INTRON Sply	TF binding site mE1_TFBS_sens
X	13321114	X_13321114_SNP [dm3] X_13427081_SNP [dm6]	T	A	2.207e^-4	0.854	INTERGENIC
2L	9592134	2L_9592134_SNP [dm3] 2L_9592134_SNP [dm6]	A	T	2.208e^-4	0.854	DOWNSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3L	16325335	3L_16325335_SNP [dm3] 3L_16332235_SNP [dm6]	A	T	2.223e^-4	0.854	NON_SYNONYMOUS_CODING retinin DOWNSTREAM CG33060	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9443361	3R_9443361_SNP [dm3] 3R_13617639_SNP [dm6]	T	A	2.237e^-4	0.854	DOWNSTREAM CR45680 INTERGENIC
3L	6603369	3L_6603369_SNP [dm3] 3L_6610269_SNP [dm6]	G	A	2.245e^-4	0.854	INTRON CG8398	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6041504	2R_6041504_SNP [dm3] 2R_10153999_SNP [dm6]	A	C	2.245e^-4	0.854	INTRON CR45133 & 1 other
2R	12037149	2R_12037149_INS [dm3] 2R_16149644_INS [dm6]	T	TTGT	2.260e^-4	0.854	UTR_5_PRIME CG10731 UPSTREAM Ext2 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
X	3705419	X_3705419_SNP [dm3] X_3811386_SNP [dm6]	T	C	2.262e^-4	0.854	UPSTREAM ec DOWNSTREAM fd3F INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4314524	3L_4314524_SNP [dm3] 3L_4314524_SNP [dm6]	A	T	2.273e^-4	0.854	NON_SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_sens
2L	5269081	2L_5269081_SNP [dm3] 2L_5269081_SNP [dm6]	C	T	2.279e^-4	0.854	NON_SYNONYMOUS_CODING Cyp4ac3 DOWNSTREAM Cyp4ac2 INTRON tkv
2L	11293796	2L_11293796_SNP [dm3] 2L_11293796_SNP [dm6]	A	T	2.283e^-4	0.854	INTERGENIC
3L	4994464	3L_4994464_SNP [dm3] 3L_4994464_SNP [dm6]	T	C	2.289e^-4	0.854	NON_SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	9436839	3R_9436839_SNP [dm3] 3R_13611117_SNP [dm6]	G	T	2.290e^-4	0.854	DOWNSTREAM CG9757 INTERGENIC
2L	4432957	2L_4432957_INS [dm3] 2L_4432957_INS [dm6]	T	TAAAACACT	2.295e^-4	0.854	UPSTREAM CG34177 & 1 other INTRON CG15431
2L	6085254	2L_6085254_SNP [dm3] 2L_6085254_SNP [dm6]	T	G	2.300e^-4	0.854	INTRON Kr-h1
2L	10602880	2L_10602880_SNP [dm3] 2L_10602880_SNP [dm6]	A	C	2.303e^-4	0.854	INTRON Trim9
2R	18226508	2R_18226508_SNP [dm3] 2R_22339003_SNP [dm6]	G	A	2.307e^-4	0.854	INTRON Liprin-gamma
2R	18056515	2R_18056515_SNP [dm3] 2R_22169010_SNP [dm6]	T	C	2.307e^-4	0.854	INTRON a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14029584	3R_14029584_SNP [dm3] 3R_18203862_SNP [dm6]	A	C	2.312e^-4	0.854	INTRON CG7985
2R	9139976	2R_9139976_SNP [dm3] 2R_13252471_SNP [dm6]	G	C	2.323e^-4	0.854	UPSTREAM CG4712 INTRON CG4714	TF binding site mE1_TFBS_cad
2R	19389179	2R_19389179_SNP [dm3] 2R_23501656_SNP [dm6]	T	A	2.329e^-4	0.854	DOWNSTREAM CG13558 INTERGENIC
3L	3009240	3L_3009240_SNP [dm3] 3L_3009240_SNP [dm6]	T	C	2.329e^-4	0.854	SYNONYMOUS_CODING FMRFaR	TF binding site mE1_TFBS_cad
3L	9781535	3L_9781535_SNP [dm3] 3L_9788435_SNP [dm6]	A	C	2.333e^-4	0.854	UTR_3_PRIME Zasp67
3R	9439832	3R_9439832_SNP [dm3] 3R_13614110_SNP [dm6]	A	C	2.336e^-4	0.854	INTERGENIC
3L	8357215	3L_8357215_SNP [dm3] 3L_8364115_SNP [dm6]	G	A	2.337e^-4	0.854	INTERGENIC
3L	3009309	3L_3009309_SNP [dm3] 3L_3009309_SNP [dm6]	T	A	2.351e^-4	0.854	SYNONYMOUS_CODING FMRFaR	TF binding site mE1_TFBS_cad
3L	14109883	3L_14109883_SNP [dm3] 3L_14116783_SNP [dm6]	C	T	2.363e^-4	0.854	INTRON Sox21b
X	11304137	X_11304137_SNP [dm3] X_11410104_SNP [dm6]	C	T	2.367e^-4	0.854	SYNONYMOUS_CODING CG15196 DOWNSTREAM dlg1
3R	13626942	3R_13626942_SNP [dm3] 3R_17801220_SNP [dm6]	T	A	2.376e^-4	0.854	UTR_5_PRIME CG17803 DOWNSTREAM CG17806
2R	18226582	2R_18226582_SNP [dm3] 2R_22339077_SNP [dm6]	G	A	2.380e^-4	0.854	SYNONYMOUS_CODING Liprin-gamma	TF binding site mE1_TFBS_chinmo
2L	1917331	2L_1917331_SNP [dm3] 2L_1917331_SNP [dm6]	G	C	2.384e^-4	0.854	INTRON CG7337
3L	15765920	3L_15765920_SNP [dm3] 3L_15772820_SNP [dm6]	T	G	2.404e^-4	0.854	INTERGENIC	TF binding site mE1_TFBS_cad
3R	10694930	3R_10694930_SNP [dm3] 3R_14869208_SNP [dm6]	C	A	2.406e^-4	0.854	INTRON btsz
3L	3046961	3L_3046961_SNP [dm3] 3L_3046961_SNP [dm6]	G	A	2.408e^-4	0.854	UPSTREAM Sk2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	20422492	3R_20422492_SNP [dm3] 3R_24596770_SNP [dm6]	A	G	2.409e^-4	0.854	INTRON mld
2R	17897355	2R_17897355_SNP [dm3] 2R_22009850_SNP [dm6]	G	T	2.410e^-4	0.854	INTRON CG34370
2L	3440659	2L_3440659_SNP [dm3] 2L_3440659_SNP [dm6]	C	T	2.414e^-4	0.854	INTERGENIC
2R	4879191	2R_4879191_SNP [dm3] 2R_8991686_SNP [dm6]	T	C	2.417e^-4	0.854	INTERGENIC
3L	1903380	3L_1903380_INS [dm3] 3L_1903380_INS [dm6]	A	AA	2.421e^-4	0.854	INTRON CG1887
2R	13607417	2R_13607417_SNP [dm3] 2R_17719912_SNP [dm6]	G	C	2.426e^-4	0.854	UPSTREAM CG6424 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2R	13607421	2R_13607421_SNP [dm3] 2R_17719916_SNP [dm6]	G	A	2.426e^-4	0.854	UPSTREAM CG6424 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2L	11882790	2L_11882790_SNP [dm3] 2L_11882790_SNP [dm6]	T	A	2.427e^-4	0.854	INTRON Pde1c
3R	20628216	3R_20628216_SNP [dm3] 3R_24802494_SNP [dm6]	T	C	2.428e^-4	0.854	NON_SYNONYMOUS_CODING polybromo
2L	16507932	2L_16507932_SNP [dm3] 2L_16507932_SNP [dm6]	A	G	2.429e^-4	0.854	DOWNSTREAM CG5953 & 1 other INTERGENIC	insulator Insulator_Class_II.mE01 Insulator_Class_I.mE01 TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	9089047	2L_9089047_SNP [dm3] 2L_9089047_SNP [dm6]	A	G	2.429e^-4	0.854	SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10907907	X_10907907_DEL [dm3] X_11013874_DEL [dm6]	GGGAAGAG	G	2.433e^-4	0.854	INTRON CG42339
3L	3047055	3L_3047055_SNP [dm3] 3L_3047055_SNP [dm6]	A	C	2.452e^-4	0.854	UPSTREAM Sk2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	2980306	3L_2980306_SNP [dm3] 3L_2980306_SNP [dm6]	A	G	2.452e^-4	0.854	UPSTREAM CG2107 INTERGENIC
2L	4699252	2L_4699252_DEL [dm3] 2L_4699252_DEL [dm6]	ATT	A	2.459e^-4	0.854	INTRON CG34351
2R	12880646	2R_12880646_SNP [dm3] 2R_16993141_SNP [dm6]	C	A	2.459e^-4	0.854	INTRON Cbp53E
3L	10650606	3L_10650606_SNP [dm3] 3L_10657506_SNP [dm6]	T	G	2.464e^-4	0.854	INTRON CG32066	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	5269055	2L_5269055_SNP [dm3] 2L_5269055_SNP [dm6]	C	T	2.467e^-4	0.854	SPLICE_SITE_REGION Cyp4ac3 SYNONYMOUS_CODING Cyp4ac3 DOWNSTREAM Cyp4ac2 INTRON tkv
2L	4699426	2L_4699426_SNP [dm3] 2L_4699426_SNP [dm6]	A	C	2.468e^-4	0.854	INTRON CG34351
3R	4950391	3R_4950391_SNP [dm3] 3R_9124669_SNP [dm6]	A	G	2.468e^-4	0.854	INTRON pum
3R	9203933	3R_9203933_SNP [dm3] 3R_13378211_SNP [dm6]	G	A	2.471e^-4	0.854	SYNONYMOUS_CODING CG9813 DOWNSTREAM CR44138 INTRON CG9813
3L	13019809	3L_13019809_SNP [dm3] 3L_13026709_SNP [dm6]	A	T	2.471e^-4	0.854	UPSTREAM Zmynd10 INTERGENIC
3L	4314521	3L_4314521_SNP [dm3] 3L_4314521_SNP [dm6]	C	T	2.477e^-4	0.854	NON_SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_sens
3L	3627236	3L_3627236_DEL [dm3] 3L_3627236_DEL [dm6]	ATAAATAAAATCCA...	A	2.482e^-4	0.854	INTRON dar1
3L	17825136	3L_17825136_SNP [dm3] 3L_17832036_SNP [dm6]	T	C	2.495e^-4	0.854	INTRON Grd	TF binding site mE1_TFBS_cad
3L	17825409	3L_17825409_SNP [dm3] 3L_17832309_SNP [dm6]	C	A	2.495e^-4	0.854	DOWNSTREAM CG32188 INTRON Grd
2R	16025841	2R_16025841_SNP [dm3] 2R_20138336_SNP [dm6]	A	T	2.496e^-4	0.854	DOWNSTREAM CR44635 & 1 other INTERGENIC
3R	19449576	3R_19449576_SNP [dm3] 3R_23623854_SNP [dm6]	C	A	2.501e^-4	0.854	INTRON CG31145
2R	19383161	2R_19383161_SNP [dm3] 2R_23495638_SNP [dm6]	C	T	2.505e^-4	0.854	INTERGENIC
3L	4994460	3L_4994460_SNP [dm3] 3L_4994460_SNP [dm6]	T	G	2.507e^-4	0.854	NON_SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	9442222	3R_9442222_SNP [dm3] 3R_13616500_SNP [dm6]	T	C	2.512e^-4	0.854	DOWNSTREAM CG9269 INTERGENIC
2R	16947982	2R_16947982_SNP [dm3] 2R_21060477_SNP [dm6]	C	G	2.516e^-4	0.854	UTR_5_PRIME CG15653 UPSTREAM mRpL54 DOWNSTREAM cpa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20985560	3R_20985560_SNP [dm3] 3R_25159838_SNP [dm6]	T	A	2.517e^-4	0.854	INTERGENIC
2R	19001080	2R_19001080_SNP [dm3] 2R_23113557_SNP [dm6]	T	G	2.522e^-4	0.854	DOWNSTREAM CR44782 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9309192	2L_9309192_SNP [dm3] 2L_9309192_SNP [dm6]	A	T	2.526e^-4	0.854	INTERGENIC
3L	13310154	3L_13310154_SNP [dm3] 3L_13317054_SNP [dm6]	G	C	2.527e^-4	0.854	INTERGENIC
3L	9283304	3L_9283304_SNP [dm3] 3L_9290204_SNP [dm6]	C	T	2.528e^-4	0.854	INTERGENIC
3R	26150738	3R_26150738_SNP [dm3] 3R_30325016_SNP [dm6]	T	A	2.528e^-4	0.854	INTRON hdc
3L	9781461	3L_9781461_SNP [dm3] 3L_9788361_SNP [dm6]	A	C	2.529e^-4	0.854	UTR_3_PRIME Zasp67
2R	18229376	2R_18229376_SNP [dm3] 2R_22341871_SNP [dm6]	T	C	2.537e^-4	0.854	INTRON Liprin-gamma	TF binding site mE1_TFBS_cad
2L	11046457	2L_11046457_SNP [dm3] 2L_11046457_SNP [dm6]	C	G	2.542e^-4	0.854	INTRON Samuel
3L	5853188	3L_5853188_SNP [dm3] 3L_5860088_SNP [dm6]	A	G	2.542e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	19384341	2R_19384341_SNP [dm3] 2R_23496818_SNP [dm6]	T	C	2.543e^-4	0.854	INTERGENIC
2R	18228457	2R_18228457_SNP [dm3] 2R_22340952_SNP [dm6]	C	T	2.547e^-4	0.854	SYNONYMOUS_CODING Liprin-gamma	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3009252	3L_3009252_SNP [dm3] 3L_3009252_SNP [dm6]	T	C	2.547e^-4	0.854	SYNONYMOUS_CODING FMRFaR	TF binding site mE1_TFBS_cad
2R	19392582	2R_19392582_INS [dm3] 2R_23505059_INS [dm6]	T	TT	2.548e^-4	0.854	INTERGENIC
3R	20999496	3R_20999496_SNP [dm3] 3R_25173774_SNP [dm6]	C	T	2.549e^-4	0.854	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	17147878	3R_17147878_SNP [dm3] 3R_21322156_SNP [dm6]	A	G	2.549e^-4	0.854	INTRON CG16791	TF binding site mE1_TFBS_cad
2R	13607213	2R_13607213_SNP [dm3] 2R_17719708_SNP [dm6]	A	G	2.551e^-4	0.854	UPSTREAM CG6424 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2R	5681846	2R_5681846_SNP [dm3] 2R_9794341_SNP [dm6]	A	G	2.575e^-4	0.854	UTR_5_PRIME CG1698 INTRON CG1688 & 1 other
3L	16266201	3L_16266201_SNP [dm3] 3L_16273101_SNP [dm6]	A	G	2.575e^-4	0.854	INTRON CG13066
3L	5885831	3L_5885831_INS [dm3] 3L_5892731_INS [dm6]	T	AGGATCC	2.585e^-4	0.854	INTERGENIC
2L	6760745	2L_6760745_SNP [dm3] 2L_6760745_SNP [dm6]	G	A	2.590e^-4	0.854	INTRON CG11321	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3420811	2R_3420811_SNP [dm3] 2R_7533306_SNP [dm6]	C	T	2.592e^-4	0.854	UPSTREAM Cyt-b5 & 1 other EXON CR44209	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	4879226	2R_4879226_SNP [dm3] 2R_8991721_SNP [dm6]	C	T	2.598e^-4	0.854	INTERGENIC
3L	6737420	3L_6737420_SNP [dm3] 3L_6744320_SNP [dm6]	T	A	2.599e^-4	0.854	DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
2R	6078098	2R_6078098_SNP [dm3] 2R_10190593_SNP [dm6]	T	C	2.600e^-4	0.854	INTRON KCNQ	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24268860	3R_24268860_SNP [dm3] 3R_28443138_SNP [dm6]	T	C	2.604e^-4	0.854	INTRON beat-VI
3R	3700207	3R_3700207_SNP [dm3] 3R_7874485_SNP [dm6]	A	C	2.604e^-4	0.854	INTRON CG17816
3L	13310160	3L_13310160_SNP [dm3] 3L_13317060_SNP [dm6]	C	A	2.608e^-4	0.854	INTERGENIC
3R	9285405	3R_9285405_SNP [dm3] 3R_13459683_SNP [dm6]	T	A	2.617e^-4	0.854	INTRON CR17025 & 1 other	TF binding site mE1_TFBS_HSA
2L	21305593	2L_21305593_SNP [dm3] 2L_21305593_SNP [dm6]	A	T	2.632e^-4	0.854	INTRON Mio
3L	23255804	3L_23255804_SNP [dm3] 3L_23262704_SNP [dm6]	G	C	2.636e^-4	0.854	SPLICE_SITE_REGION nAChRalpha4 INTRON nAChRalpha4
3L	23025109	3L_23025109_SNP [dm3] 3L_23032009_SNP [dm6]	C	T	2.641e^-4	0.854	SYNONYMOUS_CODING nrm INTRON nrm	TF binding site mE1_TFBS_sens
3R	9438570	3R_9438570_SNP [dm3] 3R_13612848_SNP [dm6]	G	T	2.655e^-4	0.854	UPSTREAM CG9757 INTERGENIC
3L	23389040	3L_23389040_SNP [dm3] 3L_23395940_SNP [dm6]	A	T	2.659e^-4	0.854	INTERGENIC
3L	14219901	3L_14219901_SNP [dm3] 3L_14226801_SNP [dm6]	T	C	2.664e^-4	0.854	INTRON nuf	TF binding site mE1_TFBS_bab1
3R	25992644	3R_25992644_SNP [dm3] 3R_30166922_SNP [dm6]	A	G	2.664e^-4	0.854	UPSTREAM CG31030 INTRON CG31028	TF binding site BDTNP1_TFBS_twi
2R	6214277	2R_6214277_SNP [dm3] 2R_10326772_SNP [dm6]	C	T	2.666e^-4	0.854	INTRON CG42732
2R	12486015	2R_12486015_SNP [dm3] 2R_16598510_SNP [dm6]	T	C	2.675e^-4	0.854	UPSTREAM CG5089 INTRON CG8303
2R	19383167	2R_19383167_SNP [dm3] 2R_23495644_SNP [dm6]	C	A	2.675e^-4	0.854	INTERGENIC
3R	8908619	3R_8908619_SNP [dm3] 3R_13082897_SNP [dm6]	A	G	2.678e^-4	0.854	INTERGENIC
3R	25404840	3R_25404840_SNP [dm3] 3R_29579118_SNP [dm6]	T	A	2.679e^-4	0.854	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	15773753	3L_15773753_SNP [dm3] 3L_15780653_SNP [dm6]	C	T	2.679e^-4	0.854	INTERGENIC
3L	15029350	3L_15029350_SNP [dm3] 3L_15036250_SNP [dm6]	T	C	2.684e^-4	0.854	INTRON Sytbeta
3L	9236179	3L_9236179_SNP [dm3] 3L_9243079_SNP [dm6]	T	C	2.686e^-4	0.854	INTERGENIC
3R	11424569	3R_11424569_SNP [dm3] 3R_15598847_SNP [dm6]	A	G	2.692e^-4	0.854	INTERGENIC
3L	15778449	3L_15778449_SNP [dm3] 3L_15785349_SNP [dm6]	C	G	2.696e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
3R	9290019	3R_9290019_SNP [dm3] 3R_13464297_SNP [dm6]	G	T	2.700e^-4	0.854	UPSTREAM mir-252 DOWNSTREAM CG14372 INTRON CR17025 EXON mir-252
2R	18236344	2R_18236344_SNP [dm3] 2R_22348839_SNP [dm6]	C	G	2.705e^-4	0.854	UTR_3_PRIME CG11298 INTRON Liprin-gamma
2R	8815733	2R_8815733_SNP [dm3] 2R_12928228_SNP [dm6]	A	G	2.710e^-4	0.854	UPSTREAM sug INTRON sug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2470846	3R_2470846_SNP [dm3] 3R_6645124_SNP [dm6]	A	T	2.713e^-4	0.854	UPSTREAM CG1315 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18423537	2R_18423537_SNP [dm3] 2R_22536032_SNP [dm6]	A	G	2.713e^-4	0.854	INTRON px
2L	8662773	2L_8662773_SNP [dm3] 2L_8662773_SNP [dm6]	C	T	2.714e^-4	0.854	INTRON Sema-1a
3L	9233663	3L_9233663_SNP [dm3] 3L_9240563_SNP [dm6]	A	C	2.725e^-4	0.854	INTERGENIC
2L	9383490	2L_9383490_SNP [dm3] 2L_9383490_SNP [dm6]	G	T	2.726e^-4	0.854	INTRON Shawl
3L	9597366	3L_9597366_SNP [dm3] 3L_9604266_SNP [dm6]	T	A	2.729e^-4	0.854	INTRON CG3280
2R	12901611	2R_12901611_SNP [dm3] 2R_17014106_SNP [dm6]	C	G	2.736e^-4	0.854	INTRON Ehbp1
3L	16266157	3L_16266157_SNP [dm3] 3L_16273057_SNP [dm6]	C	A	2.739e^-4	0.854	INTRON CG13066
3R	25977676	3R_25977676_SNP [dm3] 3R_30151954_SNP [dm6]	G	C	2.739e^-4	0.854	UPSTREAM CG15529 INTERGENIC	TF binding site mE1_TFBS_cad
2R	10676826	2R_10676826_SNP [dm3] 2R_14789321_SNP [dm6]	A	G	2.767e^-4	0.854	INTRON kn	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	15216909	2R_15216909_SNP [dm3] 2R_19329404_SNP [dm6]	A	T	2.768e^-4	0.854	INTRON Rgk1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	2804012	3R_2804012_SNP [dm3] 3R_6978290_SNP [dm6]	C	T	2.775e^-4	0.854	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	1420187	X_1420187_SNP [dm3] X_1526154_SNP [dm6]	C	G	2.777e^-4	0.854	INTRON Mur2B
3R	21384765	3R_21384765_SNP [dm3] 3R_25559043_SNP [dm6]	A	C	2.780e^-4	0.854	INTRON msi
3R	24268844	3R_24268844_SNP [dm3] 3R_28443122_SNP [dm6]	T	C	2.784e^-4	0.854	INTRON beat-VI
3L	3046807	3L_3046807_SNP [dm3] 3L_3046807_SNP [dm6]	A	G	2.789e^-4	0.854	UTR_5_PRIME scramb2 UPSTREAM Sk2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	15746582	3L_15746582_SNP [dm3] 3L_15753482_SNP [dm6]	C	G	2.799e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16507686	2L_16507686_SNP [dm3] 2L_16507686_SNP [dm6]	T	A	2.799e^-4	0.854	DOWNSTREAM CG5953 & 1 other INTERGENIC
2L	3672264	2L_3672264_SNP [dm3] 2L_3672264_SNP [dm6]	G	A	2.804e^-4	0.854	INTRON CG34340
3L	16221259	3L_16221259_SNP [dm3] 3L_16228159_SNP [dm6]	C	T	2.811e^-4	0.854	SYNONYMOUS_CODING l_3_72Dn UPSTREAM CG5027	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	5289871	X_5289871_SNP [dm3] X_5395838_SNP [dm6]	C	T	2.811e^-4	0.854	INTRON SK
2L	2531384	2L_2531384_SNP [dm3] 2L_2531384_SNP [dm6]	A	T	2.815e^-4	0.854	INTERGENIC
3L	17433383	3L_17433383_SNP [dm3] 3L_17440283_SNP [dm6]	T	A	2.819e^-4	0.854	INTRON CG18265
X	22359715	X_22359715_SNP [dm3] X_22957879_SNP [dm6]	A	C	2.838e^-4	0.854	DOWNSTREAM CR45502 & 1 other INTERGENIC
3L	507276	3L_507276_SNP [dm3] 3L_507276_SNP [dm6]	A	G	2.848e^-4	0.854	INTRON klar
3R	8144527	3R_8144527_SNP [dm3] 3R_12318805_SNP [dm6]	A	G	2.856e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	21965398	2L_21965398_SNP [dm3] 2L_21965398_SNP [dm6]	C	A	2.860e^-4	0.854	INTERGENIC
2L	6600187	2L_6600187_SNP [dm3] 2L_6600187_SNP [dm6]	C	G	2.863e^-4	0.854	INTRON CG11319
2L	1917308	2L_1917308_SNP [dm3] 2L_1917308_SNP [dm6]	C	T	2.868e^-4	0.854	INTRON CG7337
2R	6089419	2R_6089419_SNP [dm3] 2R_10201914_SNP [dm6]	G	A	2.881e^-4	0.854	INTERGENIC
3L	17431892	3L_17431892_SNP [dm3] 3L_17438792_SNP [dm6]	A	C	2.886e^-4	0.854	UPSTREAM CG18265 DOWNSTREAM CG32176 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	13310140	3L_13310140_SNP [dm3] 3L_13317040_SNP [dm6]	T	C	2.892e^-4	0.854	INTERGENIC
3R	21384507	3R_21384507_SNP [dm3] 3R_25558785_SNP [dm6]	T	G	2.900e^-4	0.854	INTRON msi
3R	21383537	3R_21383537_SNP [dm3] 3R_25557815_SNP [dm6]	A	T	2.906e^-4	0.854	INTRON msi
3L	12371916	3L_12371916_SNP [dm3] 3L_12378816_SNP [dm6]	A	C	2.910e^-4	0.854	INTRON Ncc69
X	5811675	X_5811675_SNP [dm3] X_5917642_SNP [dm6]	T	A	2.911e^-4	0.854	UPSTREAM CG3011 INTRON CG3726	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5811677	X_5811677_INS [dm3] X_5917644_INS [dm6]	T	AGGTGAGAAAACAACAATAA...	2.911e^-4	0.854	UPSTREAM CG3011 INTRON CG3726	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10112707	3R_10112707_SNP [dm3] 3R_14286985_SNP [dm6]	C	T	2.912e^-4	0.854	UPSTREAM trx INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	4275313	2R_4275313_SNP [dm3] 2R_8387808_SNP [dm6]	G	T	2.921e^-4	0.854	NON_SYNONYMOUS_CODING pdm3 UTR_5_PRIME pdm3
3R	11424566	3R_11424566_SNP [dm3] 3R_15598844_SNP [dm6]	T	C	2.933e^-4	0.854	INTERGENIC
X	7733433	X_7733433_SNP [dm3] X_7839400_SNP [dm6]	G	T	2.934e^-4	0.854	INTRON CG1402
2R	422308	2R_422308_SNP [dm3] 2R_4534803_SNP [dm6]	G	A	2.953e^-4	0.854	INTERGENIC	transposable element FlyBase
3R	9439594	3R_9439594_SNP [dm3] 3R_13613872_SNP [dm6]	A	T	2.954e^-4	0.854	INTERGENIC
X	5423242	X_5423242_SNP [dm3] X_5529209_SNP [dm6]	T	C	2.954e^-4	0.854	NON_SYNONYMOUS_CODING Vsx2	TF binding site mE1_TFBS_cad
X	3705492	X_3705492_SNP [dm3] X_3811459_SNP [dm6]	G	C	2.955e^-4	0.854	UPSTREAM ec DOWNSTREAM fd3F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	15488586	X_15488586_SNP [dm3] X_15594553_SNP [dm6]	A	G	2.957e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	10907750	3R_10907750_SNP [dm3] 3R_15082028_SNP [dm6]	G	A	2.962e^-4	0.854	SYNONYMOUS_CODING CG6966	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7829902	3L_7829902_INS [dm3] 3L_7836802_INS [dm6]	T	TAT	2.967e^-4	0.854	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2L	5269233	2L_5269233_SNP [dm3] 2L_5269233_SNP [dm6]	C	T	2.971e^-4	0.854	SYNONYMOUS_CODING Cyp4ac3 DOWNSTREAM Cyp4ac2 INTRON tkv
2L	9111346	2L_9111346_SNP [dm3] 2L_9111346_SNP [dm6]	G	T	2.971e^-4	0.854	UPSTREAM Or30a INTERGENIC
2R	9250047	2R_9250047_SNP [dm3] 2R_13362542_SNP [dm6]	C	A	2.975e^-4	0.854	EXON CR45312	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	5811681	X_5811681_MNP [dm3] X_5917648_MNP [dm6]	TTT	GCA	2.996e^-4	0.854	UPSTREAM CG3011 INTRON CG3726	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6545135	2R_6545135_SNP [dm3] 2R_10657630_SNP [dm6]	A	G	2.997e^-4	0.854	UPSTREAM CR44452 INTERGENIC
X	6884037	X_6884037_SNP [dm3] X_6990004_SNP [dm6]	C	A	2.999e^-4	0.854	INTRON ogre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	16702726	2R_16702726_SNP [dm3] 2R_20815221_SNP [dm6]	C	T	3.005e^-4	0.854	INTERGENIC
3R	9443609	3R_9443609_SNP [dm3] 3R_13617887_SNP [dm6]	C	T	3.006e^-4	0.854	EXON CR45680
3R	21383093	3R_21383093_SNP [dm3] 3R_25557371_SNP [dm6]	C	T	3.008e^-4	0.854	INTRON msi
3R	21384750	3R_21384750_SNP [dm3] 3R_25559028_SNP [dm6]	T	C	3.011e^-4	0.854	INTRON msi
3L	5344366	3L_5344366_SNP [dm3] 3L_5351266_SNP [dm6]	G	T	3.020e^-4	0.854	INTRON lama
3L	12307963	3L_12307963_SNP [dm3] 3L_12314863_SNP [dm6]	A	G	3.021e^-4	0.854	INTERGENIC	regulatory region REDfly_CRMs
2L	13896764	2L_13896764_SNP [dm3] 2L_13896764_SNP [dm6]	G	A	3.028e^-4	0.854	INTRON CenG1A	TF binding site mE1_TFBS_cad
2L	16507969	2L_16507969_SNP [dm3] 2L_16507969_SNP [dm6]	G	T	3.033e^-4	0.854	DOWNSTREAM CG5953 & 1 other INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	9396292	3R_9396292_SNP [dm3] 3R_13570570_SNP [dm6]	C	A	3.033e^-4	0.854	INTERGENIC
2R	12338836	2R_12338836_SNP [dm3] 2R_16451331_SNP [dm6]	T	G	3.046e^-4	0.854	INTERGENIC
3L	16313092	3L_16313092_SNP [dm3] 3L_16319992_SNP [dm6]	G	C	3.054e^-4	0.854	UPSTREAM CG13041 & 1 other DOWNSTREAM CR45663 & 1 other INTRON CG13060
2L	13881394	2L_13881394_SNP [dm3] 2L_13881394_SNP [dm6]	C	T	3.058e^-4	0.854	INTRON CenG1A
2L	18014473	2L_18014473_SNP [dm3] 2L_18014473_SNP [dm6]	C	T	3.058e^-4	0.854	INTRON rdo	regulatory region REDfly_CRMs
2R	12914452	2R_12914452_SNP [dm3] 2R_17026947_SNP [dm6]	A	T	3.065e^-4	0.854	UPSTREAM RhoGEF2 DOWNSTREAM Ark EXON CR44390	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3R	10349932	3R_10349932_SNP [dm3] 3R_14524210_SNP [dm6]	A	G	3.068e^-4	0.854	INTRON Pde6
3R	21383193	3R_21383193_SNP [dm3] 3R_25557471_SNP [dm6]	C	A	3.074e^-4	0.854	INTRON msi
2R	12891348	2R_12891348_SNP [dm3] 2R_17003843_SNP [dm6]	A	G	3.077e^-4	0.854	SPLICE_SITE_REGION NiPp1 DOWNSTREAM CG6796 INTRON NiPp1
3L	5853107	3L_5853107_SNP [dm3] 3L_5860007_SNP [dm6]	T	A	3.079e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	17708353	X_17708353_DEL [dm3] X_17814320_DEL [dm6]	TAAAG	T	3.091e^-4	0.854	DOWNSTREAM OdsH INTERGENIC
2L	5563916	2L_5563916_DEL [dm3] 2L_5563916_DEL [dm6]	GT	G	3.096e^-4	0.854	DOWNSTREAM GluRIIB & 1 other INTERGENIC
2R	18226280	2R_18226280_SNP [dm3] 2R_22338775_SNP [dm6]	G	T	3.098e^-4	0.854	INTRON Liprin-gamma
3L	10393057	3L_10393057_SNP [dm3] 3L_10399957_SNP [dm6]	A	G	3.100e^-4	0.854	INTERGENIC	TF binding site mE1_TFBS_inv
3R	9435898	3R_9435898_SNP [dm3] 3R_13610176_SNP [dm6]	T	C	3.101e^-4	0.854	UPSTREAM CG9759 INTERGENIC
3L	9759749	3L_9759749_SNP [dm3] 3L_9766649_SNP [dm6]	A	G	3.104e^-4	0.854	INTRON CG8177
3L	24298329	3L_24298329_SNP [dm3] 3L_24305229_SNP [dm6]	C	A	3.107e^-4	0.854	INTERGENIC
3R	21854081	3R_21854081_DEL [dm3] 3R_26028359_DEL [dm6]	GA	G	3.109e^-4	0.854	DOWNSTREAM E_spl_m5-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6732417	3L_6732417_SNP [dm3] 3L_6739317_SNP [dm6]	G	A	3.113e^-4	0.854	NON_SYNONYMOUS_CODING dikar UTR_3_PRIME dikar DOWNSTREAM dikar
X	5725042	X_5725042_SNP [dm3] X_5831009_SNP [dm6]	T	A	3.125e^-4	0.854	DOWNSTREAM CR43264 INTRON CG15765
3L	14363871	3L_14363871_SNP [dm3] 3L_14370771_SNP [dm6]	G	A	3.125e^-4	0.854	INTERGENIC
2L	14545654	2L_14545654_SNP [dm3] 2L_14545654_SNP [dm6]	A	T	3.134e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9421942	3R_9421942_SNP [dm3] 3R_13596220_SNP [dm6]	G	A	3.155e^-4	0.854	INTERGENIC
3R	10112720	3R_10112720_SNP [dm3] 3R_14286998_SNP [dm6]	T	A	3.155e^-4	0.854	UPSTREAM trx INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	23848765	3R_23848765_SNP [dm3] 3R_28023043_SNP [dm6]	A	G	3.169e^-4	0.854	INTERGENIC
2L	19409930	2L_19409930_SNP [dm3] 2L_19409930_SNP [dm6]	C	T	3.170e^-4	0.854	INTRON Pax
3R	9426073	3R_9426073_DEL [dm3] 3R_13600351_DEL [dm6]	AA	A	3.174e^-4	0.854	INTERGENIC
3R	9456453	3R_9456453_SNP [dm3] 3R_13630731_SNP [dm6]	T	C	3.175e^-4	0.854	DOWNSTREAM CR45594 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	1227199	3R_1227199_SNP [dm3] 3R_5401477_SNP [dm6]	G	C	3.177e^-4	0.854	INTRON CG2663	TF binding site mE1_TFBS_cad
3L	2000180	3L_2000180_SNP [dm3] 3L_2000180_SNP [dm6]	G	C	3.178e^-4	0.854	INTERGENIC
3R	16348813	3R_16348813_SNP [dm3] 3R_20523091_SNP [dm6]	C	G	3.191e^-4	0.854	INTERGENIC
3L	2713363	3L_2713363_SNP [dm3] 3L_2713363_SNP [dm6]	T	G	3.196e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	15320369	3L_15320369_SNP [dm3] 3L_15327269_SNP [dm6]	G	A	3.198e^-4	0.854	INTERGENIC
3R	2471770	3R_2471770_SNP [dm3] 3R_6646048_SNP [dm6]	A	C	3.207e^-4	0.854	UPSTREAM Taf1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
3L	5444596	3L_5444596_SNP [dm3] 3L_5451496_SNP [dm6]	A	C	3.213e^-4	0.854	INTERGENIC
3L	1929038	3L_1929038_DEL [dm3] 3L_1929038_DEL [dm6]	ACTTGGA	A	3.215e^-4	0.854	INTRON Dbx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14106328	3L_14106328_SNP [dm3] 3L_14113228_SNP [dm6]	A	C	3.224e^-4	0.854	SYNONYMOUS_CODING Sox21b
3R	25994049	3R_25994049_SNP [dm3] 3R_30168327_SNP [dm6]	A	G	3.224e^-4	0.854	SYNONYMOUS_CODING CG31028
3R	9451809	3R_9451809_SNP [dm3] 3R_13626087_SNP [dm6]	G	A	3.229e^-4	0.854	INTERGENIC
3L	14363663	3L_14363663_SNP [dm3] 3L_14370563_SNP [dm6]	C	T	3.229e^-4	0.854	UPSTREAM CG13481 INTERGENIC
X	13246985	X_13246985_SNP [dm3] X_13352952_SNP [dm6]	G	T	3.231e^-4	0.854	INTERGENIC
3L	5853435	3L_5853435_SNP [dm3] 3L_5860335_SNP [dm6]	A	G	3.235e^-4	0.854	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6526598	3L_6526598_SNP [dm3] 3L_6533498_SNP [dm6]	G	A	3.243e^-4	0.854	INTRON sfl
3R	10228942	3R_10228942_INS [dm3] 3R_14403220_INS [dm6]	G	GCTTTCAG	3.246e^-4	0.854	INTRON cv-c
3R	10174418	3R_10174418_SNP [dm3] 3R_14348696_SNP [dm6]	T	C	3.246e^-4	0.854	INTRON NK7.1
3L	494797	3L_494797_INS [dm3] 3L_494797_INS [dm6]	A	AA	3.248e^-4	0.854	INTRON klar
3L	1138463	3L_1138463_SNP [dm3] 3L_1138463_SNP [dm6]	C	T	3.254e^-4	0.854	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	21384232	3R_21384232_SNP [dm3] 3R_25558510_SNP [dm6]	T	G	3.266e^-4	0.854	INTRON msi
2R	14616150	2R_14616150_SNP [dm3] 2R_18728645_SNP [dm6]	T	C	3.267e^-4	0.854	STOP_LOST List NON_SYNONYMOUS_CODING List INTRON Hs3st-A
2R	12061569	2R_12061569_SNP [dm3] 2R_16174064_SNP [dm6]	C	A	3.275e^-4	0.854	INTRON Ptp52F	TF binding site mE1_TFBS_cad
2L	5914967	2L_5914967_SNP [dm3] 2L_5914967_SNP [dm6]	T	C	3.280e^-4	0.854	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad
3R	18485740	3R_18485740_SNP [dm3] 3R_22660018_SNP [dm6]	A	T	3.281e^-4	0.854	INTRON CG45058
3L	1839352	3L_1839352_SNP [dm3] 3L_1839352_SNP [dm6]	A	C	3.291e^-4	0.854	DOWNSTREAM Cpr62Bc INTERGENIC
3L	21198021	3L_21198021_SNP [dm3] 3L_21204921_SNP [dm6]	T	G	3.292e^-4	0.854	UPSTREAM CG10512 INTRON CG10512
3L	6270180	3L_6270180_SNP [dm3] 3L_6277080_SNP [dm6]	C	T	3.298e^-4	0.854	DOWNSTREAM CG43168 INTERGENIC
3L	16740215	3L_16740215_SNP [dm3] 3L_16747115_SNP [dm6]	A	T	3.299e^-4	0.854	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11232115	3R_11232115_SNP [dm3] 3R_15406393_SNP [dm6]	T	A	3.302e^-4	0.854	UPSTREAM CG6125 INTRON CG6125
3R	24268857	3R_24268857_SNP [dm3] 3R_28443135_SNP [dm6]	A	T	3.303e^-4	0.854	INTRON beat-VI
3L	11626953	3L_11626953_SNP [dm3] 3L_11633853_SNP [dm6]	A	G	3.308e^-4	0.854	UPSTREAM CR45158 INTRON CG32091
X	2459005	X_2459005_SNP [dm3] X_2564972_SNP [dm6]	A	G	3.310e^-4	0.854	INTRON Pdfr
X	5811674	X_5811674_SNP [dm3] X_5917641_SNP [dm6]	T	C	3.317e^-4	0.854	UPSTREAM CG3011 INTRON CG3726	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12520246	3L_12520246_SNP [dm3] 3L_12527146_SNP [dm6]	A	G	3.317e^-4	0.854	UPSTREAM eIF-2beta DOWNSTREAM nst INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26978080	3R_26978080_SNP [dm3] 3R_31152358_SNP [dm6]	C	T	3.319e^-4	0.854	INTRON Gycbeta100B
3L	23947247	3L_23947247_SNP [dm3] 3L_23954147_SNP [dm6]	A	G	3.329e^-4	0.854	INTRON CG40470
2L	8771844	2L_8771844_SNP [dm3] 2L_8771844_SNP [dm6]	T	C	3.332e^-4	0.854	SYNONYMOUS_CODING CG9465
2R	12876920	2R_12876920_SNP [dm3] 2R_16989415_SNP [dm6]	C	A	3.334e^-4	0.854	INTRON Cbp53E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9383503	2L_9383503_SNP [dm3] 2L_9383503_SNP [dm6]	A	C	3.340e^-4	0.854	INTRON Shawl
2R	19684802	2R_19684802_SNP [dm3] 2R_23797279_SNP [dm6]	T	C	3.350e^-4	0.854	INTRON CG9850
2L	16508055	2L_16508055_SNP [dm3] 2L_16508055_SNP [dm6]	T	C	3.358e^-4	0.854	DOWNSTREAM CG5953 & 1 other INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	9185947	3R_9185947_SNP [dm3] 3R_13360225_SNP [dm6]	A	C	3.361e^-4	0.854	INTERGENIC
3L	3106984	3L_3106984_SNP [dm3] 3L_3106984_SNP [dm6]	G	C	3.364e^-4	0.854	UPSTREAM Cht7 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19385165	2R_19385165_SNP [dm3] 2R_23497642_SNP [dm6]	T	A	3.366e^-4	0.854	INTERGENIC
3R	13692307	3R_13692307_SNP [dm3] 3R_17866585_SNP [dm6]	C	A	3.368e^-4	0.854	INTRON tinc	TF binding site mE1_TFBS_cad
3R	20490847	3R_20490847_SNP [dm3] 3R_24665125_SNP [dm6]	C	A	3.375e^-4	0.854	UTR_5_PRIME slo INTRON slo	regulatory region REDfly_CRMs
3R	9439225	3R_9439225_SNP [dm3] 3R_13613503_SNP [dm6]	T	G	3.395e^-4	0.854	INTERGENIC
3L	7054433	3L_7054433_SNP [dm3] 3L_7061333_SNP [dm6]	A	T	3.397e^-4	0.854	INTRON CG8641
X	5437085	X_5437085_SNP [dm3] X_5543052_SNP [dm6]	A	T	3.402e^-4	0.854	INTRON Vsx2
2L	17343844	2L_17343844_SNP [dm3] 2L_17343844_SNP [dm6]	C	T	3.420e^-4	0.854	INTERGENIC
X	7377924	X_7377924_DEL [dm3] X_7483891_DEL [dm6]	AG	A	3.422e^-4	0.854	INTERGENIC
X	5725046	X_5725046_SNP [dm3] X_5831013_SNP [dm6]	A	T	3.422e^-4	0.854	DOWNSTREAM CR43264 INTRON CG15765
3L	6735931	3L_6735931_SNP [dm3] 3L_6742831_SNP [dm6]	T	C	3.425e^-4	0.854	UPSTREAM dikar INTRON dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	1388039	3L_1388039_SNP [dm3] 3L_1388039_SNP [dm6]	T	A	3.428e^-4	0.854	DOWNSTREAM ru INTRON Ptp61F
3L	3918367	3L_3918367_SNP [dm3] 3L_3918367_SNP [dm6]	T	C	3.432e^-4	0.854	INTRON Eip63F-1
2L	6581004	2L_6581004_SNP [dm3] 2L_6581004_SNP [dm6]	A	C	3.436e^-4	0.854	INTRON CG11319
2L	1888172	2L_1888172_SNP [dm3] 2L_1888172_SNP [dm6]	G	T	3.447e^-4	0.854	INTRON CG7337	TF binding site BDTNP1_TFBS_da
X	2182186	X_2182186_SNP [dm3] X_2288153_SNP [dm6]	A	G	3.450e^-4	0.854	INTRON CG2865	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10919006	3R_10919006_INS [dm3] 3R_15093284_INS [dm6]	G	GG	3.458e^-4	0.854	INTRON CG6966	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	6577922	3L_6577922_SNP [dm3] 3L_6584822_SNP [dm6]	C	T	3.464e^-4	0.854	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_inv
X	5423201	X_5423201_SNP [dm3] X_5529168_SNP [dm6]	A	T	3.472e^-4	0.854	SYNONYMOUS_CODING Vsx2	TF binding site mE1_TFBS_cad
2R	7104013	2R_7104013_SNP [dm3] 2R_11216508_SNP [dm6]	C	T	3.477e^-4	0.854	UTR_3_PRIME shn DOWNSTREAM CG9084	TF binding site mE1_TFBS_cad
2L	22003376	2L_22003376_SNP [dm3] 2L_22003376_SNP [dm6]	C	T	3.486e^-4	0.854	INTERGENIC	transposable element FlyBase
2R	14398409	2R_14398409_SNP [dm3] 2R_18510904_SNP [dm6]	A	G	3.489e^-4	0.854	INTERGENIC
X	16450587	X_16450587_SNP [dm3] X_16556554_SNP [dm6]	C	G	3.494e^-4	0.854	UTR_3_PRIME Pp2B-14D DOWNSTREAM Pp2B-14D
3R	10112749	3R_10112749_SNP [dm3] 3R_14287027_SNP [dm6]	G	A	3.496e^-4	0.854	UPSTREAM trx INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	10538745	3R_10538745_SNP [dm3] 3R_14713023_SNP [dm6]	G	C	3.508e^-4	0.854	INTRON kibra	TF binding site BDTNP1_TFBS_dl
2R	17557497	2R_17557497_SNP [dm3] 2R_21669992_SNP [dm6]	A	T	3.513e^-4	0.854	UPSTREAM NC2alpha & 4 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
X	12422148	X_12422148_SNP [dm3] X_12528115_SNP [dm6]	C	T	3.518e^-4	0.854	INTRON CG43921
2R	12341207	2R_12341207_SNP [dm3] 2R_16453702_SNP [dm6]	T	A	3.519e^-4	0.854	INTERGENIC
3R	18903187	3R_18903187_SNP [dm3] 3R_23077465_SNP [dm6]	C	T	3.520e^-4	0.854	INTRON CG13830
2L	21305628	2L_21305628_SNP [dm3] 2L_21305628_SNP [dm6]	C	A	3.522e^-4	0.854	INTRON Mio
X	19973119	X_19973119_SNP [dm3] X_20079086_SNP [dm6]	G	A	3.531e^-4	0.854	INTERGENIC
3R	25977673	3R_25977673_SNP [dm3] 3R_30151951_SNP [dm6]	G	A	3.538e^-4	0.854	UPSTREAM CG15529 INTERGENIC	TF binding site mE1_TFBS_cad
3R	13257628	3R_13257628_SNP [dm3] 3R_17431906_SNP [dm6]	T	C	3.540e^-4	0.854	INTRON CG5873
3R	9429642	3R_9429642_DEL [dm3] 3R_13603920_DEL [dm6]	CC	C	3.544e^-4	0.854	INTERGENIC
X	5414360	X_5414360_SNP [dm3] X_5520327_SNP [dm6]	A	G	3.559e^-4	0.854	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7826508	3L_7826508_SNP [dm3] 3L_7833408_SNP [dm6]	G	A	3.574e^-4	0.854	UPSTREAM Pdp1 INTRON Pdp1
3L	426877	3L_426877_SNP [dm3] 3L_426877_SNP [dm6]	C	T	3.574e^-4	0.854	INTERGENIC
2L	9182269	2L_9182269_SNP [dm3] 2L_9182269_SNP [dm6]	C	A	3.586e^-4	0.854	INTRON tai	TF binding site mE1_TFBS_Trl
3R	7144180	3R_7144180_SNP [dm3] 3R_11318458_SNP [dm6]	A	G	3.588e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2674490	3L_2674490_SNP [dm3] 3L_2674490_SNP [dm6]	T	A	3.590e^-4	0.854	INTRON Fife
2L	22003542	2L_22003542_SNP [dm3] 2L_22003542_SNP [dm6]	G	T	3.599e^-4	0.854	INTERGENIC
3L	24533090	3L_24533090_DEL [dm3] 3L_24539990_DEL [dm6]	TCGT	A	3.601e^-4	0.854	INTRON mRpS5
3L	19217208	3L_19217208_SNP [dm3] 3L_19224108_SNP [dm6]	A	G	3.601e^-4	0.854	INTRON fz2
3L	10728342	3L_10728342_INS [dm3] 3L_10735242_INS [dm6]	T	TTAT	3.601e^-4	0.854	INTERGENIC
X	5725128	X_5725128_SNP [dm3] X_5831095_SNP [dm6]	G	C	3.604e^-4	0.854	DOWNSTREAM CR43264 INTRON CG15765
3L	557293	3L_557293_SNP [dm3] 3L_557293_SNP [dm6]	A	G	3.608e^-4	0.854	INTRON hipk
2L	9379329	2L_9379329_SNP [dm3] 2L_9379329_SNP [dm6]	A	G	3.609e^-4	0.854	INTRON Shawl
2L	15198294	2L_15198294_SNP [dm3] 2L_15198294_SNP [dm6]	G	T	3.610e^-4	0.854	INTRON CG4168
3R	9434010	3R_9434010_SNP [dm3] 3R_13608288_SNP [dm6]	G	T	3.621e^-4	0.854	UTR_3_PRIME CG9759 DOWNSTREAM CG9759 INTRON CG9759
3L	4994715	3L_4994715_SNP [dm3] 3L_4994715_SNP [dm6]	C	T	3.630e^-4	0.854	SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3R	23871952	3R_23871952_SNP [dm3] 3R_28046230_SNP [dm6]	T	G	3.630e^-4	0.854	INTRON CG34362
3R	24040871	3R_24040871_SNP [dm3] 3R_28215149_SNP [dm6]	G	A	3.642e^-4	0.854	INTRON CG34354	TF binding site BDTNP1_TFBS_da
2L	3573508	2L_3573508_SNP [dm3] 2L_3573508_SNP [dm6]	G	T	3.647e^-4	0.854	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_Trl
X	10210786	X_10210786_SNP [dm3] X_10316753_SNP [dm6]	A	T	3.652e^-4	0.854	INTRON alpha-Man-I
2R	16006712	2R_16006712_SNP [dm3] 2R_20119207_SNP [dm6]	A	T	3.652e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19132660	3L_19132660_SNP [dm3] 3L_19139560_SNP [dm6]	G	A	3.657e^-4	0.854	UPSTREAM CG14082 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	17747577	3R_17747577_SNP [dm3] 3R_21921855_SNP [dm6]	G	A	3.660e^-4	0.854	INTERGENIC
2R	9407630	2R_9407630_SNP [dm3] 2R_13520125_SNP [dm6]	A	C	3.661e^-4	0.854	SYNONYMOUS_CODING Vmat	TF binding site mE1_TFBS_cad
3R	25484566	3R_25484566_SNP [dm3] 3R_29658844_SNP [dm6]	A	G	3.667e^-4	0.854	INTRON Dop1R2
3L	16740155	3L_16740155_SNP [dm3] 3L_16747055_SNP [dm6]	T	C	3.673e^-4	0.854	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9260763	3L_9260763_SNP [dm3] 3L_9267663_SNP [dm6]	G	C	3.675e^-4	0.854	INTRON GluRIB
2R	17896600	2R_17896600_SNP [dm3] 2R_22009095_SNP [dm6]	T	A	3.688e^-4	0.854	INTRON CG34370
3L	6329349	3L_6329349_SNP [dm3] 3L_6336249_SNP [dm6]	A	C	3.694e^-4	0.854	INTRON CG13300	TF binding site mE1_TFBS_inv
3R	9151710	3R_9151710_DEL [dm3] 3R_13325988_DEL [dm6]	TT	A	3.695e^-4	0.854	INTERGENIC
2L	6510956	2L_6510956_SNP [dm3] 2L_6510956_SNP [dm6]	C	T	3.696e^-4	0.854	INTRON CG31637
X	11103874	X_11103874_SNP [dm3] X_11209841_SNP [dm6]	C	A	3.697e^-4	0.854	INTERGENIC
3L	1839387	3L_1839387_SNP [dm3] 3L_1839387_SNP [dm6]	G	A	3.698e^-4	0.854	DOWNSTREAM Cpr62Bc INTERGENIC
3R	8564865	3R_8564865_SNP [dm3] 3R_12739143_SNP [dm6]	G	A	3.708e^-4	0.854	UPSTREAM CG5724 INTERGENIC
2R	10087495	2R_10087495_SNP [dm3] 2R_14199990_SNP [dm6]	A	G	3.713e^-4	0.854	SYNONYMOUS_CODING VGAT	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2587601	3L_2587601_SNP [dm3] 3L_2587601_SNP [dm6]	T	A	3.713e^-4	0.854	UTR_5_PRIME RpL8 INTRON RpL8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2R	16702778	2R_16702778_SNP [dm3] 2R_20815273_SNP [dm6]	G	A	3.714e^-4	0.854	INTERGENIC
3R	8564413	3R_8564413_SNP [dm3] 3R_12738691_SNP [dm6]	A	G	3.717e^-4	0.854	UPSTREAM CG5724 INTERGENIC
3R	10682486	3R_10682486_SNP [dm3] 3R_14856764_SNP [dm6]	T	A	3.718e^-4	0.854	INTRON btsz
2L	5083012	2L_5083012_SNP [dm3] 2L_5083012_SNP [dm6]	A	T	3.719e^-4	0.854	INTRON pgant5
3R	25425400	3R_25425400_SNP [dm3] 3R_29599678_SNP [dm6]	C	A	3.725e^-4	0.854	SYNONYMOUS_CODING CG7568 DOWNSTREAM alph INTRON alph
3R	9451755	3R_9451755_DEL [dm3] 3R_13626033_DEL [dm6]	AA	A	3.727e^-4	0.854	INTERGENIC
3L	14106891	3L_14106891_SNP [dm3] 3L_14113791_SNP [dm6]	A	G	3.731e^-4	0.854	INTRON Sox21b
2R	15364440	2R_15364440_SNP [dm3] 2R_19476935_SNP [dm6]	G	A	3.735e^-4	0.854	INTRON par-1
X	6884009	X_6884009_SNP [dm3] X_6989976_SNP [dm6]	A	C	3.745e^-4	0.854	INTRON ogre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	14878816	3R_14878816_DEL [dm3] 3R_19053094_DEL [dm6]	AA	A	3.749e^-4	0.854	INTRON cdi
3R	9305998	3R_9305998_DEL [dm3] 3R_13480276_DEL [dm6]	TT	T	3.754e^-4	0.854	INTERGENIC
3L	17422210	3L_17422210_SNP [dm3] 3L_17429110_SNP [dm6]	C	A	3.759e^-4	0.854	UTR_3_PRIME CG32174 & 1 other UPSTREAM CG33052	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
X	21896692	X_21896692_SNP [dm3] X_22494856_SNP [dm6]	A	T	3.762e^-4	0.854	INTRON l_1_G0196	transposable element FlyBase
3L	21485026	3L_21485026_SNP [dm3] 3L_21491926_SNP [dm6]	T	C	3.762e^-4	0.854	NON_SYNONYMOUS_CODING CG7202	TF binding site mE1_TFBS_sens
3L	1903366	3L_1903366_SNP [dm3] 3L_1903366_SNP [dm6]	A	G	3.764e^-4	0.854	INTRON CG1887
3L	14147422	3L_14147422_SNP [dm3] 3L_14154322_SNP [dm6]	G	A	3.767e^-4	0.854	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1348707	2L_1348707_SNP [dm3] 2L_1348707_SNP [dm6]	C	G	3.768e^-4	0.854	INTERGENIC
3L	7989103	3L_7989103_DEL [dm3] 3L_7996003_DEL [dm6]	CAGTTAATTTGCAAACGAAT...	TGAATATA	3.768e^-4	0.854	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	17874687	3R_17874687_SNP [dm3] 3R_22048965_SNP [dm6]	C	A	3.769e^-4	0.854	INTRON how	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	3571543	2L_3571543_SNP [dm3] 2L_3571543_SNP [dm6]	G	A	3.775e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	24114971	3R_24114971_SNP [dm3] 3R_28289249_SNP [dm6]	T	A	3.775e^-4	0.854	INTERGENIC
3R	13627041	3R_13627041_SNP [dm3] 3R_17801319_SNP [dm6]	A	G	3.778e^-4	0.854	UPSTREAM CG17803 DOWNSTREAM CG17806 INTERGENIC
2L	10580895	2L_10580895_SNP [dm3] 2L_10580895_SNP [dm6]	G	T	3.788e^-4	0.854	DOWNSTREAM CG34161 & 1 other INTRON Trim9
3R	10907788	3R_10907788_SNP [dm3] 3R_15082066_SNP [dm6]	A	G	3.790e^-4	0.854	SYNONYMOUS_CODING CG6966	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9283656	3R_9283656_SNP [dm3] 3R_13457934_SNP [dm6]	T	A	3.792e^-4	0.854	INTRON CG14372 EXON CR17025
3L	8599675	3L_8599675_SNP [dm3] 3L_8606575_SNP [dm6]	A	G	3.793e^-4	0.854	INTRON CG6282
X	17708382	X_17708382_SNP [dm3] X_17814349_SNP [dm6]	C	A	3.801e^-4	0.854	DOWNSTREAM OdsH INTERGENIC
2L	6301314	2L_6301314_SNP [dm3] 2L_6301314_SNP [dm6]	C	T	3.804e^-4	0.854	SYNONYMOUS_CODING Ddr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12901756	2R_12901756_SNP [dm3] 2R_17014251_SNP [dm6]	A	G	3.807e^-4	0.854	INTRON Ehbp1
2L	14002659	2L_14002659_SNP [dm3] 2L_14002659_SNP [dm6]	G	T	3.809e^-4	0.854	INTERGENIC
X	4613564	X_4613564_SNP [dm3] X_4719531_SNP [dm6]	C	T	3.820e^-4	0.854	INTRON Proc-R
2R	12886298	2R_12886298_SNP [dm3] 2R_16998793_SNP [dm6]	G	A	3.824e^-4	0.854	SYNONYMOUS_CODING ste24b UPSTREAM ste24c & 1 other	TF binding site mE1_TFBS_HSA
X	5423489	X_5423489_SNP [dm3] X_5529456_SNP [dm6]	G	T	3.826e^-4	0.854	INTRON Vsx2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9455401	3R_9455401_SNP [dm3] 3R_13629679_SNP [dm6]	C	A	3.828e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25412892	3R_25412892_SNP [dm3] 3R_29587170_SNP [dm6]	T	A	3.854e^-4	0.854	DOWNSTREAM CG7567 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	9999220	3R_9999220_DEL [dm3] 3R_14173498_DEL [dm6]	CCG	TT	3.856e^-4	0.854	UTR_3_PRIME Dop1R1
3R	9999227	3R_9999227_MNP [dm3] 3R_14173505_MNP [dm6]	AGC	TTA	3.856e^-4	0.854	UTR_3_PRIME Dop1R1
3R	9999231	3R_9999231_MNP [dm3] 3R_14173509_MNP [dm6]	GGC	TAT	3.856e^-4	0.854	UTR_3_PRIME Dop1R1
3L	11524182	3L_11524182_INS [dm3] 3L_11531082_INS [dm6]	T	TGGT	3.861e^-4	0.854	INTRON Mob2
2R	6400036	2R_6400036_SNP [dm3] 2R_10512531_SNP [dm6]	T	G	3.861e^-4	0.854	INTRON lola
2R	4275225	2R_4275225_SNP [dm3] 2R_8387720_SNP [dm6]	T	C	3.869e^-4	0.854	INTRON pdm3
3L	1131209	3L_1131209_DEL [dm3] 3L_1131209_DEL [dm6]	GA	G	3.882e^-4	0.854	INTERGENIC	regulatory region REDfly_CRMs
2R	18229379	2R_18229379_SNP [dm3] 2R_22341874_SNP [dm6]	T	A	3.892e^-4	0.854	INTRON Liprin-gamma	TF binding site mE1_TFBS_cad
3L	9844618	3L_9844618_SNP [dm3] 3L_9851518_SNP [dm6]	C	A	3.895e^-4	0.854	INTRON RasGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26978076	3R_26978076_INS [dm3] 3R_31152354_INS [dm6]	T	TA	3.896e^-4	0.854	INTRON Gycbeta100B
2R	19383170	2R_19383170_SNP [dm3] 2R_23495647_SNP [dm6]	T	A	3.899e^-4	0.854	INTERGENIC
3R	20370883	3R_20370883_SNP [dm3] 3R_24545161_SNP [dm6]	C	T	3.906e^-4	0.854	INTRON Esyt2	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	2810650	3L_2810650_DEL [dm3] 3L_2810650_DEL [dm6]	GAGGA	G	3.915e^-4	0.854	INTRON CG43444
2R	18227913	2R_18227913_SNP [dm3] 2R_22340408_SNP [dm6]	T	G	3.917e^-4	0.854	INTRON Liprin-gamma
3L	5493898	3L_5493898_SNP [dm3] 3L_5500798_SNP [dm6]	C	T	3.929e^-4	0.854	DOWNSTREAM CR44518 & 1 other INTERGENIC
2L	16491114	2L_16491114_SNP [dm3] 2L_16491114_SNP [dm6]	T	G	3.930e^-4	0.854	UPSTREAM Tpr2 & 1 other DOWNSTREAM CG4580 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_Ubx
3R	14508716	3R_14508716_SNP [dm3] 3R_18682994_SNP [dm6]	C	T	3.933e^-4	0.854	SYNONYMOUS_CODING CG7708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25010694	3R_25010694_SNP [dm3] 3R_29184972_SNP [dm6]	C	T	3.934e^-4	0.854	INTRON CG14509
3L	12051702	3L_12051702_SNP [dm3] 3L_12058602_SNP [dm6]	T	G	3.946e^-4	0.854	INTRON rols
2L	15198316	2L_15198316_SNP [dm3] 2L_15198316_SNP [dm6]	A	G	3.948e^-4	0.854	INTRON CG4168
3L	10653193	3L_10653193_SNP [dm3] 3L_10660093_SNP [dm6]	C	A	3.956e^-4	0.854	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11293706	2L_11293706_SNP [dm3] 2L_11293706_SNP [dm6]	G	C	3.961e^-4	0.854	INTERGENIC
3R	18752587	3R_18752587_SNP [dm3] 3R_22926865_SNP [dm6]	A	G	3.962e^-4	0.854	INTRON klg
3L	4314510	3L_4314510_SNP [dm3] 3L_4314510_SNP [dm6]	A	T	3.962e^-4	0.854	SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_sens
2L	7684231	2L_7684231_SNP [dm3] 2L_7684231_SNP [dm6]	G	T	3.972e^-4	0.854	UTR_3_PRIME Myo28B1 DOWNSTREAM CR44148 INTRON Myo28B1
3R	4036654	3R_4036654_SNP [dm3] 3R_8210932_SNP [dm6]	C	T	3.979e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3R	10695219	3R_10695219_SNP [dm3] 3R_14869497_SNP [dm6]	T	A	3.980e^-4	0.854	INTRON btsz
2R	1368787	2R_1368787_SNP [dm3] 2R_5481282_SNP [dm6]	A	G	3.983e^-4	0.854	INTRON CG30440	transposable element FlyBase
2R	10509501	2R_10509501_INS [dm3] 2R_14621996_INS [dm6]	G	GAG	3.985e^-4	0.854	UPSTREAM snoRNA:Me28S-C3227a & 4 others DOWNSTREAM snoRNA:Me18S-C1366 EXON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3R	9167477	3R_9167477_SNP [dm3] 3R_13341755_SNP [dm6]	C	T	3.988e^-4	0.854	INTRON PK2-R1
2L	16238207	2L_16238207_SNP [dm3] 2L_16238207_SNP [dm6]	G	A	3.994e^-4	0.854	SYNONYMOUS_CODING CG42817
2R	1685667	2R_1685667_SNP [dm3] 2R_5798162_SNP [dm6]	C	T	4.000e^-4	0.854	SYNONYMOUS_CODING Or42b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12977169	2R_12977169_SNP [dm3] 2R_17089664_SNP [dm6]	T	A	4.006e^-4	0.854	SPLICE_SITE_REGION Sply INTRON Sply	TF binding site mE1_TFBS_sens
2L	4353832	2L_4353832_SNP [dm3] 2L_4353832_SNP [dm6]	A	C	4.006e^-4	0.854	UTR_3_PRIME CG15429	TF binding site BDTNP1_TFBS_prd
X	6900878	X_6900878_SNP [dm3] X_7006845_SNP [dm6]	T	C	4.007e^-4	0.854	INTRON Inx7
3L	636631	3L_636631_SNP [dm3] 3L_636631_SNP [dm6]	G	C	4.016e^-4	0.854	DOWNSTREAM CR43423 EXON CR43334	regulatory region REDfly_CRMs
3L	13308961	3L_13308961_SNP [dm3] 3L_13315861_SNP [dm6]	T	A	4.021e^-4	0.854	INTERGENIC
X	5016192	X_5016192_SNP [dm3] X_5122159_SNP [dm6]	A	G	4.029e^-4	0.854	INTRON rg & 1 other
3L	12356255	3L_12356255_SNP [dm3] 3L_12363155_SNP [dm6]	T	C	4.033e^-4	0.854	INTERGENIC
2L	21964213	2L_21964213_SNP [dm3] 2L_21964213_SNP [dm6]	C	T	4.039e^-4	0.854	INTERGENIC
3R	10299135	3R_10299135_SNP [dm3] 3R_14473413_SNP [dm6]	C	T	4.045e^-4	0.854	INTRON cv-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25411738	3R_25411738_SNP [dm3] 3R_29586016_SNP [dm6]	C	T	4.055e^-4	0.854	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	2999600	2R_2999600_SNP [dm3] 2R_7112095_SNP [dm6]	A	G	4.055e^-4	0.854	INTRON esn	TF binding site mE1_TFBS_inv
2L	5914976	2L_5914976_SNP [dm3] 2L_5914976_SNP [dm6]	G	A	4.058e^-4	0.854	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad
3R	9375010	3R_9375010_SNP [dm3] 3R_13549288_SNP [dm6]	A	T	4.058e^-4	0.854	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	5482254	3L_5482254_SNP [dm3] 3L_5489154_SNP [dm6]	C	A	4.062e^-4	0.854	INTERGENIC
3R	24040851	3R_24040851_SNP [dm3] 3R_28215129_SNP [dm6]	A	T	4.062e^-4	0.854	INTRON CG34354	TF binding site BDTNP1_TFBS_da
3L	8624212	3L_8624212_SNP [dm3] 3L_8631112_SNP [dm6]	C	A	4.065e^-4	0.854	DOWNSTREAM Cdc6 INTRON Zasp66
3R	21430454	3R_21430454_SNP [dm3] 3R_25604732_SNP [dm6]	T	A	4.069e^-4	0.854	UTR_3_PRIME msi INTRON ymp
2R	11932693	2R_11932693_SNP [dm3] 2R_16045188_SNP [dm6]	C	A	4.071e^-4	0.854	SPLICE_SITE_REGION SP2353 INTRON SP2353
2R	17907371	2R_17907371_SNP [dm3] 2R_22019866_SNP [dm6]	T	A	4.089e^-4	0.854	INTRON CG34370
3R	9455403	3R_9455403_SNP [dm3] 3R_13629681_SNP [dm6]	C	T	4.091e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6545426	2R_6545426_SNP [dm3] 2R_10657921_SNP [dm6]	G	A	4.095e^-4	0.854	UPSTREAM CR44452 INTERGENIC
2L	10903133	2L_10903133_SNP [dm3] 2L_10903133_SNP [dm6]	G	C	4.098e^-4	0.854	DOWNSTREAM CR45724 INTERGENIC
2L	14796172	2L_14796172_SNP [dm3] 2L_14796172_SNP [dm6]	G	T	4.111e^-4	0.854	STOP_GAINED CG18420
3L	17687686	3L_17687686_SNP [dm3] 3L_17694586_SNP [dm6]	T	C	4.125e^-4	0.854	INTRON Ccn
3L	14551686	3L_14551686_SNP [dm3] 3L_14558586_SNP [dm6]	C	G	4.125e^-4	0.854	INTERGENIC
2L	8772292	2L_8772292_SNP [dm3] 2L_8772292_SNP [dm6]	G	A	4.131e^-4	0.854	NON_SYNONYMOUS_CODING CG9465 DOWNSTREAM CG9466
3R	5443912	3R_5443912_INS [dm3] 3R_9618190_INS [dm6]	T	TT	4.137e^-4	0.854	INTRON CG8312
2L	21314794	2L_21314794_SNP [dm3] 2L_21314794_SNP [dm6]	C	A	4.142e^-4	0.854	UTR_5_PRIME crc INTRON crc	TF binding site mE1_TFBS_HSA
3R	26131482	3R_26131482_INS [dm3] 3R_30305760_INS [dm6]	C	CC	4.148e^-4	0.854	DOWNSTREAM CG34300 INTRON hdc
X	12909717	X_12909717_SNP [dm3] X_13015684_SNP [dm6]	G	T	4.148e^-4	0.854	INTRON rad
2L	10151574	2L_10151574_SNP [dm3] 2L_10151574_SNP [dm6]	G	A	4.157e^-4	0.854	SYNONYMOUS_CODING CG4839 INTRON CG44153
3L	17269709	3L_17269709_SNP [dm3] 3L_17276609_SNP [dm6]	G	A	4.162e^-4	0.854	INTERGENIC
2R	15875412	2R_15875412_SNP [dm3] 2R_19987907_SNP [dm6]	T	G	4.166e^-4	0.854	INTERGENIC
3L	6735834	3L_6735834_SNP [dm3] 3L_6742734_SNP [dm6]	G	C	4.173e^-4	0.854	UTR_5_PRIME dikar INTRON dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	9970786	3L_9970786_DEL [dm3] 3L_9977686_DEL [dm6]	CCAAC	C	4.180e^-4	0.854	INTRON dpr6
3L	8553612	3L_8553612_SNP [dm3] 3L_8560512_SNP [dm6]	G	T	4.182e^-4	0.854	INTRON rhea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	9284325	3R_9284325_SNP [dm3] 3R_13458603_SNP [dm6]	A	G	4.191e^-4	0.854	INTRON CG14372 & 1 other
2L	1888640	2L_1888640_SNP [dm3] 2L_1888640_SNP [dm6]	T	G	4.192e^-4	0.854	INTRON CG7337
3R	9434222	3R_9434222_SNP [dm3] 3R_13608500_SNP [dm6]	A	T	4.197e^-4	0.854	UTR_3_PRIME CG9759 DOWNSTREAM CG9759 INTRON CG9759
2L	9383499	2L_9383499_SNP [dm3] 2L_9383499_SNP [dm6]	T	A	4.198e^-4	0.854	INTRON Shawl
3R	27190579	3R_27190579_SNP [dm3] 3R_31364857_SNP [dm6]	T	G	4.207e^-4	0.854	INTRON CG34347
X	12421790	X_12421790_INS [dm3] X_12527757_INS [dm6]	T	TG	4.214e^-4	0.854	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
2R	16572102	2R_16572102_SNP [dm3] 2R_20684597_SNP [dm6]	C	G	4.220e^-4	0.854	INTERGENIC
3L	16301220	3L_16301220_SNP [dm3] 3L_16308120_SNP [dm6]	C	G	4.222e^-4	0.854	NON_SYNONYMOUS_CODING CG13042 UPSTREAM CR32160 DOWNSTREAM CG13063	TF binding site mE1_TFBS_chinmo
3L	6541424	3L_6541424_SNP [dm3] 3L_6548324_SNP [dm6]	G	T	4.226e^-4	0.854	INTRON sfl
3R	14878819	3R_14878819_SNP [dm3] 3R_19053097_SNP [dm6]	A	G	4.239e^-4	0.854	INTRON cdi
3L	15773490	3L_15773490_SNP [dm3] 3L_15780390_SNP [dm6]	A	C	4.242e^-4	0.854	INTERGENIC
3L	9237311	3L_9237311_SNP [dm3] 3L_9244211_SNP [dm6]	A	C	4.247e^-4	0.854	INTERGENIC
3R	2754890	3R_2754890_SNP [dm3] 3R_6929168_SNP [dm6]	G	A	4.248e^-4	0.854	INTRON Antp
3R	9292622	3R_9292622_SNP [dm3] 3R_13466900_SNP [dm6]	C	T	4.249e^-4	0.854	UPSTREAM CR17025 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10676802	2R_10676802_SNP [dm3] 2R_14789297_SNP [dm6]	G	C	4.250e^-4	0.854	INTRON kn	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	1781637	3L_1781637_SNP [dm3] 3L_1781637_SNP [dm6]	T	G	4.256e^-4	0.854	SYNONYMOUS_CODING alpha-Spec	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3328034	2L_3328034_SNP [dm3] 2L_3328034_SNP [dm6]	C	T	4.261e^-4	0.854	INTRON CG33282
3R	8159943	3R_8159943_DEL [dm3] 3R_12334221_DEL [dm6]	AG	T	4.261e^-4	0.854	INTERGENIC
3R	2357034	3R_2357034_SNP [dm3] 3R_6531312_SNP [dm6]	G	T	4.280e^-4	0.854	UTR_3_PRIME dpr11
3R	9292115	3R_9292115_SNP [dm3] 3R_13466393_SNP [dm6]	C	G	4.283e^-4	0.854	UPSTREAM CR17025 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12432369	3L_12432369_SNP [dm3] 3L_12439269_SNP [dm6]	G	T	4.289e^-4	0.854	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	1888116	2L_1888116_SNP [dm3] 2L_1888116_SNP [dm6]	G	T	4.292e^-4	0.854	INTRON CG7337	TF binding site BDTNP1_TFBS_da
3R	23963192	3R_23963192_SNP [dm3] 3R_28137470_SNP [dm6]	A	T	4.299e^-4	0.854	INTERGENIC
3R	9443306	3R_9443306_SNP [dm3] 3R_13617584_SNP [dm6]	T	C	4.306e^-4	0.854	DOWNSTREAM CR45680 INTERGENIC
2R	18272716	2R_18272716_SNP [dm3] 2R_22385211_SNP [dm6]	C	T	4.310e^-4	0.854	INTRON CG13506
2R	12891309	2R_12891309_SNP [dm3] 2R_17003804_SNP [dm6]	A	G	4.318e^-4	0.854	DOWNSTREAM CG6796 INTRON NiPp1
3R	24268797	3R_24268797_SNP [dm3] 3R_28443075_SNP [dm6]	G	T	4.324e^-4	0.854	INTRON beat-VI
2R	12912674	2R_12912674_SNP [dm3] 2R_17025169_SNP [dm6]	C	T	4.339e^-4	0.854	SYNONYMOUS_CODING Ark UTR_3_PRIME Ark EXON CR44390
X	21175418	X_21175418_SNP [dm3] X_21304391_SNP [dm6]	C	G	4.343e^-4	0.854	UPSTREAM tRNA:CR32525 DOWNSTREAM tRNA:CR32520 INTRON CG1718
2L	16508069	2L_16508069_SNP [dm3] 2L_16508069_SNP [dm6]	A	G	4.347e^-4	0.854	DOWNSTREAM CG5953 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9230720	3L_9230720_SNP [dm3] 3L_9237620_SNP [dm6]	G	T	4.349e^-4	0.854	UPSTREAM CG4483 INTERGENIC
3L	6270231	3L_6270231_SNP [dm3] 3L_6277131_SNP [dm6]	T	A	4.351e^-4	0.854	DOWNSTREAM CG43168 INTERGENIC
2R	9250086	2R_9250086_SNP [dm3] 2R_13362581_SNP [dm6]	T	C	4.355e^-4	0.854	EXON CR45312	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3870198	2L_3870198_SNP [dm3] 2L_3870198_SNP [dm6]	G	T	4.358e^-4	0.854	SYNONYMOUS_CODING Cep97 UTR_5_PRIME Cep97	TF binding site mE1_TFBS_sens
2R	19398693	2R_19398693_SNP [dm3] 2R_23511170_SNP [dm6]	G	A	4.359e^-4	0.854	DOWNSTREAM CG3906 INTERGENIC	TF binding site mE1_TFBS_cad
X	13056296	X_13056296_SNP [dm3] X_13162263_SNP [dm6]	G	T	4.368e^-4	0.854	UTR_3_PRIME CG12096 DOWNSTREAM CG12096 INTRON CG34411
2R	6776295	2R_6776295_SNP [dm3] 2R_10888790_SNP [dm6]	A	T	4.369e^-4	0.854	NON_SYNONYMOUS_CODING CG30020	TF binding site mE1_TFBS_cad
3R	24551484	3R_24551484_SNP [dm3] 3R_28725762_SNP [dm6]	C	G	4.372e^-4	0.854	INTRON htt
3L	616350	3L_616350_DEL [dm3] 3L_616350_DEL [dm6]	TT	T	4.377e^-4	0.854	EXON CR42719	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19008324	3R_19008324_SNP [dm3] 3R_23182602_SNP [dm6]	G	A	4.378e^-4	0.854	UPSTREAM Irk1 INTRON Irk1
2R	12880767	2R_12880767_SNP [dm3] 2R_16993262_SNP [dm6]	G	A	4.379e^-4	0.854	INTRON Cbp53E
X	12421789	X_12421789_SNP [dm3] X_12527756_SNP [dm6]	T	A	4.380e^-4	0.854	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
2L	4398210	2L_4398210_SNP [dm3] 2L_4398210_SNP [dm6]	C	T	4.381e^-4	0.854	SYNONYMOUS_CODING l_2_k05819	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26130112	3R_26130112_SNP [dm3] 3R_30304390_SNP [dm6]	G	C	4.387e^-4	0.854	INTRON hdc
2R	6086343	2R_6086343_SNP [dm3] 2R_10198838_SNP [dm6]	T	C	4.394e^-4	0.854	INTRON CG34221
2L	10225211	2L_10225211_SNP [dm3] 2L_10225211_SNP [dm6]	A	G	4.395e^-4	0.854	DOWNSTREAM CG4908 INTRON CG5708	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3420645	X_3420645_SNP [dm3] X_3526612_SNP [dm6]	C	G	4.397e^-4	0.854	INTRON CG32791
2R	9209640	2R_9209640_SNP [dm3] 2R_13322135_SNP [dm6]	C	A	4.399e^-4	0.854	INTERGENIC
2L	19409929	2L_19409929_SNP [dm3] 2L_19409929_SNP [dm6]	C	G	4.402e^-4	0.854	INTRON Pax
3L	1903374	3L_1903374_SNP [dm3] 3L_1903374_SNP [dm6]	T	A	4.409e^-4	0.854	INTRON CG1887
X	1783154	X_1783154_SNP [dm3] X_1889121_SNP [dm6]	A	C	4.409e^-4	0.854	NON_SYNONYMOUS_CODING trr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	2979629	2L_2979629_DEL [dm3] 2L_2979629_DEL [dm6]	AA	A	4.414e^-4	0.854	UTR_3_PRIME Chd1 UPSTREAM CG9643 DOWNSTREAM Chd1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20398691	3R_20398691_SNP [dm3] 3R_24572969_SNP [dm6]	T	A	4.415e^-4	0.854	UPSTREAM CG13624 INTRON CG13624	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13935136	2R_13935136_SNP [dm3] 2R_18047631_SNP [dm6]	G	T	4.418e^-4	0.854	UPSTREAM CG34005 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24467452	3R_24467452_SNP [dm3] 3R_28641730_SNP [dm6]	G	A	4.418e^-4	0.854	SYNONYMOUS_CODING CG14062	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10587222	3L_10587222_SNP [dm3] 3L_10594122_SNP [dm6]	T	A	4.434e^-4	0.854	DOWNSTREAM A2bp1 INTERGENIC
3R	13195219	3R_13195219_SNP [dm3] 3R_17369497_SNP [dm6]	G	A	4.437e^-4	0.854	INTERGENIC
3L	6526876	3L_6526876_SNP [dm3] 3L_6533776_SNP [dm6]	A	T	4.442e^-4	0.854	INTRON sfl
2L	19409934	2L_19409934_SNP [dm3] 2L_19409934_SNP [dm6]	T	G	4.449e^-4	0.854	INTRON Pax
2L	19409947	2L_19409947_SNP [dm3] 2L_19409947_SNP [dm6]	G	A	4.449e^-4	0.854	INTRON Pax
3L	12026588	3L_12026588_SNP [dm3] 3L_12033488_SNP [dm6]	A	G	4.450e^-4	0.854	DOWNSTREAM CG43993 INTRON rols
2R	8307804	2R_8307804_SNP [dm3] 2R_12420299_SNP [dm6]	C	T	4.456e^-4	0.854	UPSTREAM CG42782 DOWNSTREAM CG8834 INTRON CG8834
2R	18251447	2R_18251447_SNP [dm3] 2R_22363942_SNP [dm6]	G	C	4.456e^-4	0.854	INTRON Liprin-gamma
3L	12060991	3L_12060991_SNP [dm3] 3L_12067891_SNP [dm6]	G	T	4.457e^-4	0.854	UTR_3_PRIME Sema-5c
3L	1839375	3L_1839375_SNP [dm3] 3L_1839375_SNP [dm6]	T	G	4.464e^-4	0.854	DOWNSTREAM Cpr62Bc INTERGENIC
3R	25411032	3R_25411032_DEL [dm3] 3R_29585310_DEL [dm6]	TGT	T	4.466e^-4	0.854	INTERGENIC
2L	10276981	2L_10276981_SNP [dm3] 2L_10276981_SNP [dm6]	C	T	4.472e^-4	0.854	UTR_5_PRIME Utx INTRON Utx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_zfh1
2R	18240593	2R_18240593_SNP [dm3] 2R_22353088_SNP [dm6]	C	G	4.476e^-4	0.854	INTRON Liprin-gamma
2L	11787544	2L_11787544_SNP [dm3] 2L_11787544_SNP [dm6]	A	G	4.478e^-4	0.854	UPSTREAM CG14931 INTERGENIC
X	4882310	X_4882310_DEL [dm3] X_4988277_DEL [dm6]	AA	A	4.501e^-4	0.854	INTRON CR44833
3L	12058569	3L_12058569_SNP [dm3] 3L_12065469_SNP [dm6]	G	A	4.517e^-4	0.854	UPSTREAM rols INTERGENIC
X	4148739	X_4148739_SNP [dm3] X_4254706_SNP [dm6]	A	T	4.522e^-4	0.854	INTERGENIC
3L	16301481	3L_16301481_SNP [dm3] 3L_16308381_SNP [dm6]	A	T	4.539e^-4	0.854	UPSTREAM CR32160 INTRON CG13042	TF binding site mE1_TFBS_chinmo
3R	17747756	3R_17747756_DEL [dm3] 3R_21922034_DEL [dm6]	GT	G	4.542e^-4	0.854	INTERGENIC
3L	15777615	3L_15777615_SNP [dm3] 3L_15784515_SNP [dm6]	A	T	4.544e^-4	0.854	INTERGENIC
2L	17165113	2L_17165113_SNP [dm3] 2L_17165113_SNP [dm6]	A	G	4.545e^-4	0.854	INTRON beat-IIIa & 1 other
3L	4966779	3L_4966779_SNP [dm3] 3L_4966779_SNP [dm6]	A	G	4.546e^-4	0.854	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3705395	X_3705395_SNP [dm3] X_3811362_SNP [dm6]	G	C	4.546e^-4	0.854	UPSTREAM ec DOWNSTREAM fd3F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	9438620	3R_9438620_SNP [dm3] 3R_13612898_SNP [dm6]	C	T	4.548e^-4	0.854	UPSTREAM CG9757 INTERGENIC
3L	843432	3L_843432_SNP [dm3] 3L_843432_SNP [dm6]	C	A	4.557e^-4	0.854	UTR_3_PRIME Gr61a UPSTREAM CG13889
3L	9233371	3L_9233371_DEL [dm3] 3L_9240271_DEL [dm6]	AA	A	4.564e^-4	0.854	INTERGENIC
3R	16409579	3R_16409579_SNP [dm3] 3R_20583857_SNP [dm6]	T	C	4.565e^-4	0.854	NON_SYNONYMOUS_CODING CG16953	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5955400	X_5955400_SNP [dm3] X_6061367_SNP [dm6]	T	A	4.575e^-4	0.854	NON_SYNONYMOUS_CODING CG5921	TF binding site mE1_TFBS_chinmo
X	5016135	X_5016135_INS [dm3] X_5122102_INS [dm6]	T	TT	4.578e^-4	0.854	INTRON rg & 1 other
2L	14545743	2L_14545743_SNP [dm3] 2L_14545743_SNP [dm6]	T	G	4.581e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11528906	3R_11528906_SNP [dm3] 3R_15703184_SNP [dm6]	C	T	4.589e^-4	0.854	INTERGENIC
2R	7621960	2R_7621960_SNP [dm3] 2R_11734455_SNP [dm6]	A	T	4.589e^-4	0.854	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14614463	2R_14614463_SNP [dm3] 2R_18726958_SNP [dm6]	T	C	4.592e^-4	0.854	DOWNSTREAM List INTRON Hs3st-A
2L	5914754	2L_5914754_SNP [dm3] 2L_5914754_SNP [dm6]	C	G	4.593e^-4	0.854	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad
2R	16005424	2R_16005424_SNP [dm3] 2R_20117919_SNP [dm6]	C	T	4.598e^-4	0.854	DOWNSTREAM 18w INTERGENIC
3L	19236703	3L_19236703_SNP [dm3] 3L_19243603_SNP [dm6]	T	C	4.600e^-4	0.854	INTERGENIC	TF binding site mE1_TFBS_cad
X	12541922	X_12541922_SNP [dm3] X_12647889_SNP [dm6]	A	T	4.601e^-4	0.854	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2L	10903503	2L_10903503_SNP [dm3] 2L_10903503_SNP [dm6]	A	G	4.603e^-4	0.854	DOWNSTREAM CR45724 INTERGENIC
X	14791963	X_14791963_SNP [dm3] X_14897930_SNP [dm6]	A	T	4.605e^-4	0.854	INTRON Flo2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4161606	3L_4161606_SNP [dm3] 3L_4161606_SNP [dm6]	T	A	4.619e^-4	0.854	UPSTREAM nab DOWNSTREAM mas INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	17796895	2R_17796895_SNP [dm3] 2R_21909390_SNP [dm6]	G	T	4.620e^-4	0.854	INTRON Fili
3R	8906913	3R_8906913_SNP [dm3] 3R_13081191_SNP [dm6]	T	A	4.620e^-4	0.854	INTERGENIC
3L	636621	3L_636621_SNP [dm3] 3L_636621_SNP [dm6]	G	A	4.621e^-4	0.854	DOWNSTREAM CR43423 EXON CR43334	regulatory region REDfly_CRMs
3R	16410037	3R_16410037_SNP [dm3] 3R_20584315_SNP [dm6]	T	C	4.623e^-4	0.854	INTRON CG16953
3R	13782748	3R_13782748_SNP [dm3] 3R_17957026_SNP [dm6]	T	C	4.635e^-4	0.854	INTRON cpo
3R	24551471	3R_24551471_SNP [dm3] 3R_28725749_SNP [dm6]	A	T	4.637e^-4	0.854	SPLICE_SITE_REGION htt INTRON htt
X	14791966	X_14791966_SNP [dm3] X_14897933_SNP [dm6]	C	A	4.639e^-4	0.854	INTRON Flo2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1255462	3L_1255462_SNP [dm3] 3L_1255462_SNP [dm6]	G	T	4.640e^-4	0.854	UPSTREAM CG9134 INTRON CG9130 & 1 other	TF binding site mE1_TFBS_chinmo
3R	20628208	3R_20628208_SNP [dm3] 3R_24802486_SNP [dm6]	G	A	4.646e^-4	0.854	SYNONYMOUS_CODING polybromo
2R	18500302	2R_18500302_SNP [dm3] 2R_22612797_SNP [dm6]	G	A	4.652e^-4	0.854	SPLICE_SITE_REGION CG4329 INTRON CG4329
2R	18233334	2R_18233334_DEL [dm3] 2R_22345829_DEL [dm6]	GG	G	4.657e^-4	0.854	INTRON Liprin-gamma
2R	8904773	2R_8904773_SNP [dm3] 2R_13017268_SNP [dm6]	G	C	4.661e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	6737119	3L_6737119_SNP [dm3] 3L_6744019_SNP [dm6]	A	C	4.677e^-4	0.854	UPSTREAM dikar DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
X	5423036	X_5423036_SNP [dm3] X_5529003_SNP [dm6]	C	G	4.677e^-4	0.854	UTR_3_PRIME Vsx2
3L	8518053	3L_8518053_SNP [dm3] 3L_8524953_SNP [dm6]	G	A	4.686e^-4	0.854	UPSTREAM foi & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	14570568	2L_14570568_SNP [dm3] 2L_14570568_SNP [dm6]	C	G	4.693e^-4	0.854	INTERGENIC
3L	14109132	3L_14109132_SNP [dm3] 3L_14116032_SNP [dm6]	G	C	4.699e^-4	0.854	INTRON Sox21b
3R	7734246	3R_7734246_SNP [dm3] 3R_11908524_SNP [dm6]	C	T	4.702e^-4	0.854	INTRON Cad87A
2L	4698998	2L_4698998_SNP [dm3] 2L_4698998_SNP [dm6]	C	G	4.702e^-4	0.854	INTRON CG34351
3R	17930072	3R_17930072_SNP [dm3] 3R_22104350_SNP [dm6]	A	G	4.707e^-4	0.854	INTRON CG5778 & 1 other
2R	3415885	2R_3415885_SNP [dm3] 2R_7528380_SNP [dm6]	T	A	4.710e^-4	0.854	INTRON Drat	TF binding site BDTNP1_TFBS_twi
X	5955606	X_5955606_SNP [dm3] X_6061573_SNP [dm6]	A	G	4.718e^-4	0.854	INTRON CG5921	TF binding site mE1_TFBS_chinmo
2R	18034795	2R_18034795_SNP [dm3] 2R_22147290_SNP [dm6]	A	G	4.718e^-4	0.854	INTRON a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10465841	3L_10465841_SNP [dm3] 3L_10472741_SNP [dm6]	A	G	4.726e^-4	0.854	INTERGENIC
2L	5382539	2L_5382539_SNP [dm3] 2L_5382539_SNP [dm6]	A	T	4.728e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10323454	2L_10323454_SNP [dm3] 2L_10323454_SNP [dm6]	A	C	4.752e^-4	0.854	UPSTREAM CG4995 & 1 other INTRON CG4995	TF binding site mE1_TFBS_sbb
3R	25474219	3R_25474219_SNP [dm3] 3R_29648497_SNP [dm6]	G	A	4.758e^-4	0.854	INTRON Dop1R2
X	1420052	X_1420052_SNP [dm3] X_1526019_SNP [dm6]	T	G	4.758e^-4	0.854	INTRON Mur2B
X	9231105	X_9231105_SNP [dm3] X_9337072_SNP [dm6]	A	C	4.765e^-4	0.854	SYNONYMOUS_CODING CG34449	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7644062	3L_7644062_SNP [dm3] 3L_7650962_SNP [dm6]	A	C	4.765e^-4	0.854	UPSTREAM PGRP-SD DOWNSTREAM CG7492 INTRON CG32373
3L	14114381	3L_14114381_SNP [dm3] 3L_14121281_SNP [dm6]	A	T	4.767e^-4	0.854	INTRON Sox21b
3L	9931743	3L_9931743_SNP [dm3] 3L_9938643_SNP [dm6]	A	T	4.768e^-4	0.854	INTRON CG34356
3L	3424142	3L_3424142_SNP [dm3] 3L_3424142_SNP [dm6]	A	G	4.773e^-4	0.854	INTRON sty	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	14114809	2L_14114809_DEL [dm3] 2L_14114809_DEL [dm6]	TCTTTAATGGG...	T	4.776e^-4	0.854	INTERGENIC
3L	18915215	3L_18915215_SNP [dm3] 3L_18922115_SNP [dm6]	C	T	4.779e^-4	0.854	UPSTREAM CG3819 DOWNSTREAM CG32204 INTERGENIC
3L	2812528	3L_2812528_SNP [dm3] 3L_2812528_SNP [dm6]	A	T	4.785e^-4	0.854	INTRON CG43444	TF binding site BDTNP1_TFBS_dl
3L	2202586	3L_2202586_SNP [dm3] 3L_2202586_SNP [dm6]	C	T	4.810e^-4	0.854	INTERGENIC
2R	12904370	2R_12904370_SNP [dm3] 2R_17016865_SNP [dm6]	A	T	4.816e^-4	0.854	UTR_3_PRIME CG8963 UPSTREAM Ehbp1
3R	9635383	3R_9635383_DEL [dm3] 3R_13809661_DEL [dm6]	GAAAGCCAGG	G	4.825e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17051209	X_17051209_SNP [dm3] X_17157176_SNP [dm6]	G	A	4.830e^-4	0.854	NON_SYNONYMOUS_CODING xmas-2	TF binding site mE1_TFBS_chinmo
3L	6735399	3L_6735399_SNP [dm3] 3L_6742299_SNP [dm6]	G	T	4.832e^-4	0.854	INTRON dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	19385179	2R_19385179_DEL [dm3] 2R_23497656_DEL [dm6]	TATACA	T	4.832e^-4	0.854	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.575e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1968 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	13561574	2R_13561574_SNP [dm3] 2R_17674069_SNP [dm6]	A	G	8.646e^-8	0.162	UTR_3_PRIME Sema-1b
3R	13810644	3R_13810644_DEL [dm3] 3R_17984922_DEL [dm6]	CGGTCCGAAATG...	C	2.001e^-7	0.188	INTRON cpo
3R	13810624	3R_13810624_SNP [dm3] 3R_17984902_SNP [dm6]	A	G	4.103e^-7	0.257	INTRON cpo
X	19357777	X_19357777_SNP [dm3] X_19463744_SNP [dm6]	G	A	1.537e^-6	0.71	INTRON kek5
2L	16359849	2L_16359849_INS [dm3] 2L_16359849_INS [dm6]	C	CGC	1.962e^-6	0.71	INTERGENIC
X	4704468	X_4704468_DEL [dm3] X_4810435_DEL [dm6]	TT	T	2.271e^-6	0.71	INTERGENIC
3L	9597366	3L_9597366_SNP [dm3] 3L_9604266_SNP [dm6]	T	A	3.638e^-6	0.92	INTRON CG3280
3L	17999284	3L_17999284_SNP [dm3] 3L_18006184_SNP [dm6]	A	T	4.201e^-6	0.92	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7118473	X_7118473_SNP [dm3] X_7224440_SNP [dm6]	C	G	4.417e^-6	0.92	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	19414076	2R_19414076_SNP [dm3] 2R_23526553_SNP [dm6]	G	C	6.174e^-6	0.939	SYNONYMOUS_CODING mi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15410494	2L_15410494_DEL [dm3] 2L_15410494_DEL [dm6]	GGCA	G	7.386e^-6	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	6129086	2R_6129086_INS [dm3] 2R_10241581_INS [dm6]	A	ACATATATAAAAGGA...	8.106e^-6	0.939	INTRON Hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10920558	3L_10920558_SNP [dm3] 3L_10927458_SNP [dm6]	A	G	8.367e^-6	0.939	INTERGENIC
2L	15410474	2L_15410474_INS [dm3] 2L_15410474_INS [dm6]	T	TGAAA	8.446e^-6	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	10369570	3R_10369570_INS [dm3] 3R_14543848_INS [dm6]	C	CAT	8.462e^-6	0.939	INTRON Pde6
3L	16875753	3L_16875753_SNP [dm3] 3L_16882653_SNP [dm6]	T	G	8.958e^-6	0.939	INTRON Lmpt
2R	2999617	2R_2999617_DEL [dm3] 2R_7112112_DEL [dm6]	GCAGTG	G	9.436e^-6	0.939	INTRON esn	TF binding site mE1_TFBS_inv
3L	16875752	3L_16875752_SNP [dm3] 3L_16882652_SNP [dm6]	T	G	9.595e^-6	0.939	INTRON Lmpt
3R	25975834	3R_25975834_SNP [dm3] 3R_30150112_SNP [dm6]	G	A	1.001e^-5	0.939	UPSTREAM AdoR INTERGENIC
X	9885770	X_9885770_SNP [dm3] X_9991737_SNP [dm6]	T	C	1.136e^-5	0.939	INTRON CG32694
X	9885778	X_9885778_INS [dm3] X_9991745_INS [dm6]	T	TTAT	1.136e^-5	0.939	INTRON CG32694
3L	18007548	3L_18007548_SNP [dm3] 3L_18014448_SNP [dm6]	T	A	1.303e^-5	0.939	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	15410489	2L_15410489_DEL [dm3] 2L_15410489_DEL [dm6]	CACCA	C	1.503e^-5	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11064482	3L_11064482_SNP [dm3] 3L_11071382_SNP [dm6]	C	G	1.595e^-5	0.939	INTRON Mocs1
2L	15410477	2L_15410477_INS [dm3] 2L_15410477_INS [dm6]	A	ATC	1.628e^-5	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12582924	2L_12582924_DEL [dm3] 2L_12582924_DEL [dm6]	AC	T	1.662e^-5	0.939	DOWNSTREAM CR44596 EXON CR44595
2L	9158939	2L_9158939_DEL [dm3] 2L_9158939_DEL [dm6]	TGGATCT	T	1.791e^-5	0.939	INTRON CG32982	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
2R	9690762	2R_9690762_SNP [dm3] 2R_13803257_SNP [dm6]	T	C	1.807e^-5	0.939	INTRON Cpr50Cb	TF binding site mE1_TFBS_cad
2L	6760755	2L_6760755_SNP [dm3] 2L_6760755_SNP [dm6]	T	A	1.877e^-5	0.939	INTRON CG11321	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10936864	3R_10936864_SNP [dm3] 3R_15111142_SNP [dm6]	T	A	1.976e^-5	0.939	INTRON CG42788
3R	23158297	3R_23158297_SNP [dm3] 3R_27332575_SNP [dm6]	A	G	2.008e^-5	0.939	INTERGENIC
X	14292784	X_14292784_SNP [dm3] X_14398751_SNP [dm6]	C	G	2.159e^-5	0.939	INTRON dpr8
2L	15410512	2L_15410512_SNP [dm3] 2L_15410512_SNP [dm6]	A	T	2.172e^-5	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	10920576	3L_10920576_SNP [dm3] 3L_10927476_SNP [dm6]	T	C	2.393e^-5	0.939	INTERGENIC
X	9885800	X_9885800_SNP [dm3] X_9991767_SNP [dm6]	A	T	2.604e^-5	0.939	INTRON CG32694
3L	20164674	3L_20164674_SNP [dm3] 3L_20171574_SNP [dm6]	C	T	2.627e^-5	0.939	INTRON CG42674	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15287918	X_15287918_SNP [dm3] X_15393885_SNP [dm6]	A	T	2.644e^-5	0.939	NON_SYNONYMOUS_CODING Cngl	TF binding site mE1_TFBS_chinmo
3R	17739896	3R_17739896_SNP [dm3] 3R_21914174_SNP [dm6]	A	G	2.673e^-5	0.939	NON_SYNONYMOUS_CODING CG17843 DOWNSTREAM CG6690
2L	15410506	2L_15410506_SNP [dm3] 2L_15410506_SNP [dm6]	T	C	2.716e^-5	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	2999599	2R_2999599_SNP [dm3] 2R_7112094_SNP [dm6]	G	A	2.785e^-5	0.939	INTRON esn	TF binding site mE1_TFBS_inv
3R	21383193	3R_21383193_SNP [dm3] 3R_25557471_SNP [dm6]	C	A	2.819e^-5	0.939	INTRON msi
3R	15748318	3R_15748318_SNP [dm3] 3R_19922596_SNP [dm6]	G	T	2.888e^-5	0.939	UPSTREAM CR43282 INTRON CG4462	TF binding site mE1_TFBS_cad
3R	15748325	3R_15748325_SNP [dm3] 3R_19922603_SNP [dm6]	G	C	2.888e^-5	0.939	UPSTREAM CR43282 INTRON CG4462	TF binding site mE1_TFBS_cad
3R	21383093	3R_21383093_SNP [dm3] 3R_25557371_SNP [dm6]	C	T	3.071e^-5	0.939	INTRON msi
2L	3345713	2L_3345713_SNP [dm3] 2L_3345713_SNP [dm6]	A	G	3.091e^-5	0.939	INTRON E23	TF binding site mE1_TFBS_cnc
3R	4298638	3R_4298638_SNP [dm3] 3R_8472916_SNP [dm6]	G	A	3.194e^-5	0.939	INTRON CG45263	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	12582921	2L_12582921_SNP [dm3] 2L_12582921_SNP [dm6]	A	T	3.225e^-5	0.939	DOWNSTREAM CR44596 EXON CR44595
2R	18465847	2R_18465847_SNP [dm3] 2R_22578342_SNP [dm6]	A	G	3.255e^-5	0.939	INTRON dnr1
3R	13139524	3R_13139524_SNP [dm3] 3R_17313802_SNP [dm6]	G	T	3.333e^-5	0.939	INTERGENIC
3R	18697055	3R_18697055_SNP [dm3] 3R_22871333_SNP [dm6]	G	T	3.416e^-5	0.939	INTERGENIC
X	14292801	X_14292801_SNP [dm3] X_14398768_SNP [dm6]	C	T	3.504e^-5	0.939	INTRON dpr8
3L	20163596	3L_20163596_SNP [dm3] 3L_20170496_SNP [dm6]	G	A	3.528e^-5	0.939	INTRON CG42674	TF binding site BDTNP1_TFBS_twi
3R	24407229	3R_24407229_SNP [dm3] 3R_28581507_SNP [dm6]	G	A	3.592e^-5	0.939	UTR_3_PRIME fkh DOWNSTREAM fkh	regulatory region REDfly_CRMs
2L	15320513	2L_15320513_SNP [dm3] 2L_15320513_SNP [dm6]	T	A	3.714e^-5	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5126172	3L_5126172_SNP [dm3] 3L_5133072_SNP [dm6]	T	C	3.834e^-5	0.939	UPSTREAM CG4603 DOWNSTREAM CG15212 INTRON CG15213	TF binding site mE1_TFBS_sens
X	15288048	X_15288048_SNP [dm3] X_15394015_SNP [dm6]	T	C	3.901e^-5	0.939	SYNONYMOUS_CODING Cngl	TF binding site mE1_TFBS_chinmo
2R	13549142	2R_13549142_SNP [dm3] 2R_17661637_SNP [dm6]	T	A	3.941e^-5	0.939	INTRON CCHa1-R
2R	9006600	2R_9006600_SNP [dm3] 2R_13119095_SNP [dm6]	A	T	3.971e^-5	0.939	INTRON CG13325
3R	4225046	3R_4225046_SNP [dm3] 3R_8399324_SNP [dm6]	C	G	4.030e^-5	0.939	SYNONYMOUS_CODING CG45263
2R	12198852	2R_12198852_SNP [dm3] 2R_16311347_SNP [dm6]	A	G	4.100e^-5	0.939	INTRON Nox	TF binding site mE1_TFBS_chinmo
2R	3512386	2R_3512386_SNP [dm3] 2R_7624881_SNP [dm6]	A	G	4.146e^-5	0.939	INTRON CG43340
2L	6544611	2L_6544611_SNP [dm3] 2L_6544611_SNP [dm6]	T	C	4.170e^-5	0.939	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6544612	2L_6544612_SNP [dm3] 2L_6544612_SNP [dm6]	C	G	4.170e^-5	0.939	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1917308	2L_1917308_SNP [dm3] 2L_1917308_SNP [dm6]	C	T	4.239e^-5	0.939	INTRON CG7337
2L	15410539	2L_15410539_DEL [dm3] 2L_15410539_DEL [dm6]	ACATGATATCCACTTTGACA...	A	4.273e^-5	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	9138350	2L_9138350_DEL [dm3] 2L_9138350_DEL [dm6]	GG	G	4.360e^-5	0.939	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	21384750	3R_21384750_SNP [dm3] 3R_25559028_SNP [dm6]	T	C	4.365e^-5	0.939	INTRON msi
3R	14466541	3R_14466541_SNP [dm3] 3R_18640819_SNP [dm6]	C	T	4.448e^-5	0.939	UTR_5_PRIME CG14301 INTRON qin	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	19357808	X_19357808_SNP [dm3] X_19463775_SNP [dm6]	C	T	4.474e^-5	0.939	INTRON kek5
3L	3769571	3L_3769571_SNP [dm3] 3L_3769571_SNP [dm6]	G	A	4.582e^-5	0.939	INTRON CG32264
2R	11119735	2R_11119735_SNP [dm3] 2R_15232230_SNP [dm6]	T	G	4.587e^-5	0.939	INTRON Fs EXON CR44370	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	2565943	3L_2565943_SNP [dm3] 3L_2565943_SNP [dm6]	C	T	4.605e^-5	0.939	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10369648	3R_10369648_SNP [dm3] 3R_14543926_SNP [dm6]	C	T	4.621e^-5	0.939	INTRON Pde6
2L	11100948	2L_11100948_SNP [dm3] 2L_11100948_SNP [dm6]	C	G	4.666e^-5	0.939	UPSTREAM Ge-1 DOWNSTREAM Reps INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	6760750	2L_6760750_SNP [dm3] 2L_6760750_SNP [dm6]	T	G	4.738e^-5	0.939	INTRON CG11321	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6760751	2L_6760751_SNP [dm3] 2L_6760751_SNP [dm6]	T	A	4.738e^-5	0.939	INTRON CG11321	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2628044	3L_2628044_SNP [dm3] 3L_2628044_SNP [dm6]	T	G	4.738e^-5	0.939	INTRON Pxn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	21384507	3R_21384507_SNP [dm3] 3R_25558785_SNP [dm6]	T	G	4.856e^-5	0.939	INTRON msi
2R	13767768	2R_13767768_SNP [dm3] 2R_17880263_SNP [dm6]	G	A	4.946e^-5	0.939	UTR_3_PRIME CG30110 UPSTREAM CG30325 INTRON Elk
3R	21385875	3R_21385875_SNP [dm3] 3R_25560153_SNP [dm6]	C	T	4.946e^-5	0.939	INTRON msi
3L	2545515	3L_2545515_SNP [dm3] 3L_2545515_SNP [dm6]	C	T	4.955e^-5	0.939	INTRON Spn
X	14540916	X_14540916_SNP [dm3] X_14646883_SNP [dm6]	A	C	4.969e^-5	0.939	INTRON NetA	TF binding site BDTNP1_TFBS_twi
3R	24551478	3R_24551478_SNP [dm3] 3R_28725756_SNP [dm6]	T	A	4.996e^-5	0.939	INTRON htt
3R	13840145	3R_13840145_INS [dm3] 3R_18014423_INS [dm6]	A	GAAAAG	5.007e^-5	0.939	UTR_3_PRIME cpo
2R	6056168	2R_6056168_SNP [dm3] 2R_10168663_SNP [dm6]	T	A	5.159e^-5	0.939	INTRON KCNQ
2L	15410531	2L_15410531_SNP [dm3] 2L_15410531_SNP [dm6]	G	A	5.288e^-5	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	1917331	2L_1917331_SNP [dm3] 2L_1917331_SNP [dm6]	G	C	5.301e^-5	0.939	INTRON CG7337
3R	21384765	3R_21384765_SNP [dm3] 3R_25559043_SNP [dm6]	A	C	5.301e^-5	0.939	INTRON msi
3R	15748272	3R_15748272_SNP [dm3] 3R_19922550_SNP [dm6]	T	A	5.346e^-5	0.939	UPSTREAM CR43282 INTRON CG4462
3R	21383537	3R_21383537_SNP [dm3] 3R_25557815_SNP [dm6]	A	T	5.362e^-5	0.939	INTRON msi
3L	3768024	3L_3768024_SNP [dm3] 3L_3768024_SNP [dm6]	G	A	5.392e^-5	0.939	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	14108499	3R_14108499_SNP [dm3] 3R_18282777_SNP [dm6]	C	T	5.393e^-5	0.939	UTR_3_PRIME eIF-1A UPSTREAM CG8064 DOWNSTREAM CG14312 & 1 other	TF binding site mE1_TFBS_inv
2L	3915988	2L_3915988_SNP [dm3] 2L_3915988_SNP [dm6]	C	T	5.532e^-5	0.939	INTRON fred
2L	15410526	2L_15410526_SNP [dm3] 2L_15410526_SNP [dm6]	T	A	5.556e^-5	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	4005200	3L_4005200_SNP [dm3] 3L_4005200_SNP [dm6]	C	T	5.565e^-5	0.939	UTR_3_PRIME CG14985	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21384232	3R_21384232_SNP [dm3] 3R_25558510_SNP [dm6]	T	G	5.627e^-5	0.939	INTRON msi
2L	3014626	2L_3014626_SNP [dm3] 2L_3014626_SNP [dm6]	A	T	5.639e^-5	0.939	INTRON CG17265
2R	3519014	2R_3519014_SNP [dm3] 2R_7631509_SNP [dm6]	C	T	5.687e^-5	0.939	INTRON CG43340 EXON CR45131
3L	777025	3L_777025_SNP [dm3] 3L_777025_SNP [dm6]	A	G	5.702e^-5	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6760745	2L_6760745_SNP [dm3] 2L_6760745_SNP [dm6]	G	A	5.838e^-5	0.939	INTRON CG11321	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9691743	2R_9691743_SNP [dm3] 2R_13804238_SNP [dm6]	G	T	5.856e^-5	0.939	INTRON Cpr50Cb	TF binding site mE1_TFBS_cad
2R	9693129	2R_9693129_SNP [dm3] 2R_13805624_SNP [dm6]	C	G	5.856e^-5	0.939	UPSTREAM stj DOWNSTREAM Cpr50Cb INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	9693832	2R_9693832_SNP [dm3] 2R_13806327_SNP [dm6]	G	T	5.856e^-5	0.939	UTR_5_PRIME stj	TF binding site mE1_TFBS_HSA
3R	24551484	3R_24551484_SNP [dm3] 3R_28725762_SNP [dm6]	C	G	5.872e^-5	0.939	INTRON htt
3R	23207942	3R_23207942_SNP [dm3] 3R_27382220_SNP [dm6]	G	A	5.969e^-5	0.939	UTR_3_PRIME side INTRON side	TF binding site mE1_TFBS_chinmo
3L	10608120	3L_10608120_SNP [dm3] 3L_10615020_SNP [dm6]	T	A	6.011e^-5	0.939	INTERGENIC
2L	19611880	2L_19611880_SNP [dm3] 2L_19611880_SNP [dm6]	A	G	6.073e^-5	0.939	INTRON Lar
3R	21384865	3R_21384865_SNP [dm3] 3R_25559143_SNP [dm6]	A	T	6.113e^-5	0.939	INTRON msi
3R	21384871	3R_21384871_SNP [dm3] 3R_25559149_SNP [dm6]	A	C	6.113e^-5	0.939	INTRON msi
3R	24551471	3R_24551471_SNP [dm3] 3R_28725749_SNP [dm6]	A	T	6.114e^-5	0.939	SPLICE_SITE_REGION htt INTRON htt
2L	1932902	2L_1932902_SNP [dm3] 2L_1932902_SNP [dm6]	G	T	6.127e^-5	0.939	INTRON CG7337
2R	9694070	2R_9694070_SNP [dm3] 2R_13806565_SNP [dm6]	A	T	6.245e^-5	0.939	START_GAINED stj UTR_5_PRIME stj
X	5728555	X_5728555_SNP [dm3] X_5834522_SNP [dm6]	G	T	6.250e^-5	0.939	INTRON CG15765
2L	5256932	2L_5256932_SNP [dm3] 2L_5256932_SNP [dm6]	T	G	6.384e^-5	0.939	INTRON tkv	TF binding site mE1_TFBS_cad
3L	16926467	3L_16926467_SNP [dm3] 3L_16933367_SNP [dm6]	G	A	6.433e^-5	0.939	SPLICE_SITE_REGION CG11905 INTRON CG11905	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17739897	3R_17739897_SNP [dm3] 3R_21914175_SNP [dm6]	G	A	6.519e^-5	0.939	SYNONYMOUS_CODING CG17843 DOWNSTREAM CG6690
2L	6544385	2L_6544385_SNP [dm3] 2L_6544385_SNP [dm6]	A	G	6.527e^-5	0.939	INTRON eya	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1933022	2L_1933022_SNP [dm3] 2L_1933022_SNP [dm6]	T	G	6.623e^-5	0.939	INTRON CG7337
2L	6544413	2L_6544413_SNP [dm3] 2L_6544413_SNP [dm6]	T	G	6.629e^-5	0.939	INTRON eya	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8608310	2L_8608310_SNP [dm3] 2L_8608310_SNP [dm6]	C	T	6.671e^-5	0.939	INTRON Sema-1a
X	5811613	X_5811613_SNP [dm3] X_5917580_SNP [dm6]	G	A	6.679e^-5	0.939	UTR_5_PRIME CG3726 UPSTREAM CG3011	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15410536	2L_15410536_SNP [dm3] 2L_15410536_SNP [dm6]	T	A	6.681e^-5	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	15410538	2L_15410538_SNP [dm3] 2L_15410538_SNP [dm6]	C	A	6.702e^-5	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	2557520	3L_2557520_SNP [dm3] 3L_2557520_SNP [dm6]	A	T	6.714e^-5	0.939	INTRON msn	TF binding site mE1_TFBS_sens
2R	17444727	2R_17444727_SNP [dm3] 2R_21557222_SNP [dm6]	T	C	6.770e^-5	0.939	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9699061	2R_9699061_DEL [dm3] 2R_13811556_DEL [dm6]	AT	A	6.822e^-5	0.939	INTRON stj
2R	6831386	2R_6831386_SNP [dm3] 2R_10943881_SNP [dm6]	G	A	6.872e^-5	0.939	INTERGENIC
2L	3014628	2L_3014628_SNP [dm3] 2L_3014628_SNP [dm6]	A	T	6.915e^-5	0.939	INTRON CG17265
2L	15410425	2L_15410425_SNP [dm3] 2L_15410425_SNP [dm6]	C	G	6.928e^-5	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	6546690	2L_6546690_SNP [dm3] 2L_6546690_SNP [dm6]	A	G	6.932e^-5	0.939	UTR_5_PRIME eya	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	24551445	3R_24551445_SNP [dm3] 3R_28725723_SNP [dm6]	C	T	7.027e^-5	0.939	SYNONYMOUS_CODING htt
X	17051045	X_17051045_SNP [dm3] X_17157012_SNP [dm6]	C	T	7.083e^-5	0.939	SYNONYMOUS_CODING xmas-2	TF binding site mE1_TFBS_chinmo
2L	15410429	2L_15410429_SNP [dm3] 2L_15410429_SNP [dm6]	A	G	7.115e^-5	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	12879491	2R_12879491_SNP [dm3] 2R_16991986_SNP [dm6]	T	C	7.118e^-5	0.939	INTRON Cbp53E
2L	8357830	2L_8357830_SNP [dm3] 2L_8357830_SNP [dm6]	A	G	7.137e^-5	0.939	SYNONYMOUS_CODING CG7627
2R	19407340	2R_19407340_SNP [dm3] 2R_23519817_SNP [dm6]	G	A	7.266e^-5	0.939	DOWNSTREAM RabX1 INTERGENIC
3L	2899917	3L_2899917_SNP [dm3] 3L_2899917_SNP [dm6]	C	A	7.288e^-5	0.939	INTRON Shab
3L	12026550	3L_12026550_SNP [dm3] 3L_12033450_SNP [dm6]	G	A	7.310e^-5	0.939	DOWNSTREAM CG43993 INTRON rols
2L	15410576	2L_15410576_SNP [dm3] 2L_15410576_SNP [dm6]	T	A	7.330e^-5	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	8889173	3R_8889173_SNP [dm3] 3R_13063451_SNP [dm6]	A	C	7.491e^-5	0.939	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3L	3731147	3L_3731147_SNP [dm3] 3L_3731147_SNP [dm6]	T	C	7.507e^-5	0.939	INTRON CG32264
3R	24547245	3R_24547245_SNP [dm3] 3R_28721523_SNP [dm6]	G	A	7.613e^-5	0.939	SYNONYMOUS_CODING htt	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	12380748	2R_12380748_SNP [dm3] 2R_16493243_SNP [dm6]	T	A	7.627e^-5	0.939	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3768365	3L_3768365_SNP [dm3] 3L_3768365_SNP [dm6]	A	T	7.651e^-5	0.939	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	10796384	2L_10796384_INS [dm3] 2L_10796384_INS [dm6]	A	AATTTGT	7.659e^-5	0.939	INTRON CG31869
3L	2557523	3L_2557523_SNP [dm3] 3L_2557523_SNP [dm6]	G	A	7.720e^-5	0.939	INTRON msn	TF binding site mE1_TFBS_sens
2R	3130437	2R_3130437_SNP [dm3] 2R_7242932_SNP [dm6]	T	C	7.792e^-5	0.939	DOWNSTREAM Ady43A INTERGENIC
2R	18696372	2R_18696372_SNP [dm3] 2R_22808867_SNP [dm6]	G	A	7.918e^-5	0.939	NON_SYNONYMOUS_CODING stl
3R	11004627	3R_11004627_SNP [dm3] 3R_15178905_SNP [dm6]	A	C	7.933e^-5	0.939	INTRON Gyc88E & 1 other
3R	25513128	3R_25513128_SNP [dm3] 3R_29687406_SNP [dm6]	C	T	7.979e^-5	0.939	UPSTREAM Obp99c INTRON Obp99c
2L	6544533	2L_6544533_SNP [dm3] 2L_6544533_SNP [dm6]	A	G	8.058e^-5	0.939	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13768314	2R_13768314_SNP [dm3] 2R_17880809_SNP [dm6]	G	T	8.096e^-5	0.939	NON_SYNONYMOUS_CODING CG30110 UPSTREAM CG30325 INTRON Elk	TF binding site mE1_TFBS_HSA
2R	8350533	2R_8350533_SNP [dm3] 2R_12463028_SNP [dm6]	T	C	8.132e^-5	0.939	INTRON Lac
2L	19457269	2L_19457269_SNP [dm3] 2L_19457269_SNP [dm6]	T	C	8.204e^-5	0.939	SYNONYMOUS_CODING CG10026
2L	15410448	2L_15410448_SNP [dm3] 2L_15410448_SNP [dm6]	T	C	8.214e^-5	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	6760741	2L_6760741_SNP [dm3] 2L_6760741_SNP [dm6]	A	C	8.357e^-5	0.939	INTRON CG11321	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15430175	2L_15430175_SNP [dm3] 2L_15430175_SNP [dm6]	T	C	8.467e^-5	0.939	INTERGENIC
2R	2999600	2R_2999600_SNP [dm3] 2R_7112095_SNP [dm6]	A	G	8.593e^-5	0.939	INTRON esn	TF binding site mE1_TFBS_inv
3L	11064526	3L_11064526_DEL [dm3] 3L_11071426_DEL [dm6]	AC	G	8.726e^-5	0.939	INTRON Mocs1
X	5509440	X_5509440_MNP [dm3] X_5615407_MNP [dm6]	TTCC	CAGT	8.755e^-5	0.939	NON_SYNONYMOUS_CODING CG34434 UPSTREAM CG34435
3R	10926871	3R_10926871_SNP [dm3] 3R_15101149_SNP [dm6]	C	T	8.876e^-5	0.939	SYNONYMOUS_CODING CG42788	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5147645	2L_5147645_SNP [dm3] 2L_5147645_SNP [dm6]	T	A	8.918e^-5	0.939	INTRON Msp300
3R	16938918	3R_16938918_SNP [dm3] 3R_21113196_SNP [dm6]	T	A	8.987e^-5	0.939	INTRON Rab11	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	1127038	2R_1127038_SNP [dm3] 2R_5239533_SNP [dm6]	G	A	8.996e^-5	0.939	INTRON Nipped-A	transposable element FlyBase
2L	6544560	2L_6544560_SNP [dm3] 2L_6544560_SNP [dm6]	C	A	9.202e^-5	0.939	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6733513	3L_6733513_SNP [dm3] 3L_6740413_SNP [dm6]	G	A	9.227e^-5	0.939	UTR_3_PRIME dikar INTRON dikar
X	5728550	X_5728550_SNP [dm3] X_5834517_SNP [dm6]	C	T	9.284e^-5	0.939	INTRON CG15765
2L	3870198	2L_3870198_SNP [dm3] 2L_3870198_SNP [dm6]	G	T	9.354e^-5	0.939	SYNONYMOUS_CODING Cep97 UTR_5_PRIME Cep97	TF binding site mE1_TFBS_sens
2R	9694295	2R_9694295_SNP [dm3] 2R_13806790_SNP [dm6]	C	T	9.399e^-5	0.939	SPLICE_SITE_REGION stj INTRON stj
2R	12879457	2R_12879457_SNP [dm3] 2R_16991952_SNP [dm6]	C	T	9.547e^-5	0.939	INTRON Cbp53E
3R	19798035	3R_19798035_SNP [dm3] 3R_23972313_SNP [dm6]	T	C	9.696e^-5	0.939	INTRON CG31140
2L	1932615	2L_1932615_SNP [dm3] 2L_1932615_SNP [dm6]	G	T	9.725e^-5	0.939	INTRON CG7337	TF binding site mE1_TFBS_jumu
3L	17428292	3L_17428292_SNP [dm3] 3L_17435192_SNP [dm6]	G	T	9.811e^-5	0.939	SYNONYMOUS_CODING CG12229 INTRON CG32176	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	5147489	2L_5147489_SNP [dm3] 2L_5147489_SNP [dm6]	G	A	9.920e^-5	0.939	INTRON Msp300
3L	14447718	3L_14447718_SNP [dm3] 3L_14454618_SNP [dm6]	A	T	9.964e^-5	0.939	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19797940	3R_19797940_SNP [dm3] 3R_23972218_SNP [dm6]	G	A	9.999e^-5	0.939	INTRON CG31140
3R	21384889	3R_21384889_SNP [dm3] 3R_25559167_SNP [dm6]	T	A	1.000e^-4	0.939	INTRON msi
X	16032413	X_16032413_SNP [dm3] X_16138380_SNP [dm6]	T	C	1.004e^-4	0.939	INTRON disco-r	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	1840816	3L_1840816_SNP [dm3] 3L_1840816_SNP [dm6]	A	G	1.011e^-4	0.939	SYNONYMOUS_CODING Cpr62Bc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10796385	2L_10796385_DEL [dm3] 2L_10796385_DEL [dm6]	TCTCG	T	1.027e^-4	0.939	INTRON CG31869
X	15646825	X_15646825_SNP [dm3] X_15752792_SNP [dm6]	G	A	1.035e^-4	0.939	SYNONYMOUS_CODING Graf	TF binding site mE1_TFBS_sens
3L	16862728	3L_16862728_DEL [dm3] 3L_16869628_DEL [dm6]	TCCATGTTGCGTTTTTGCTA...	T	1.037e^-4	0.939	INTRON Lmpt
2R	16679449	2R_16679449_SNP [dm3] 2R_20791944_SNP [dm6]	A	G	1.045e^-4	0.939	SYNONYMOUS_CODING CG43668 UPSTREAM CG43677
3L	17223308	3L_17223308_SNP [dm3] 3L_17230208_SNP [dm6]	G	C	1.049e^-4	0.939	INTRON Rbp6
2L	15410577	2L_15410577_SNP [dm3] 2L_15410577_SNP [dm6]	T	A	1.063e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	2575020	2L_2575020_SNP [dm3] 2L_2575020_SNP [dm6]	G	A	1.073e^-4	0.939	UTR_5_PRIME Rad1 & 1 other DOWNSTREAM insv	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15748246	3R_15748246_SNP [dm3] 3R_19922524_SNP [dm6]	G	A	1.075e^-4	0.939	SPLICE_SITE_REGION CG4462 UPSTREAM CR43282 INTRON CG4462
2L	15410533	2L_15410533_SNP [dm3] 2L_15410533_SNP [dm6]	C	T	1.075e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	16266201	3L_16266201_SNP [dm3] 3L_16273101_SNP [dm6]	A	G	1.078e^-4	0.939	INTRON CG13066
3L	3047006	3L_3047006_SNP [dm3] 3L_3047006_SNP [dm6]	C	T	1.086e^-4	0.939	UPSTREAM Sk2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	12976220	2R_12976220_SNP [dm3] 2R_17088715_SNP [dm6]	G	A	1.088e^-4	0.939	UTR_3_PRIME Sply
3L	10751035	3L_10751035_SNP [dm3] 3L_10757935_SNP [dm6]	A	G	1.089e^-4	0.939	INTERGENIC
2R	12976219	2R_12976219_SNP [dm3] 2R_17088714_SNP [dm6]	A	G	1.094e^-4	0.939	UTR_3_PRIME Sply
3R	21385722	3R_21385722_SNP [dm3] 3R_25560000_SNP [dm6]	T	A	1.098e^-4	0.939	INTRON msi
2R	18369417	2R_18369417_SNP [dm3] 2R_22481912_SNP [dm6]	G	A	1.101e^-4	0.939	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6829305	2R_6829305_SNP [dm3] 2R_10941800_SNP [dm6]	G	T	1.106e^-4	0.939	UPSTREAM Spn47C INTERGENIC
3L	18007123	3L_18007123_DEL [dm3] 3L_18014023_DEL [dm6]	TAAAGACCGCCTTGCGCACT...	T	1.106e^-4	0.939	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	16499976	3R_16499976_SNP [dm3] 3R_20674254_SNP [dm6]	T	G	1.116e^-4	0.939	INTERGENIC
3L	3870337	3L_3870337_SNP [dm3] 3L_3870337_SNP [dm6]	A	C	1.116e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19798033	3R_19798033_SNP [dm3] 3R_23972311_SNP [dm6]	T	A	1.118e^-4	0.939	INTRON CG31140
3L	9538551	3L_9538551_SNP [dm3] 3L_9545451_SNP [dm6]	T	C	1.120e^-4	0.939	INTERGENIC
3L	19322258	3L_19322258_SNP [dm3] 3L_19329158_SNP [dm6]	T	C	1.128e^-4	0.939	INTRON pip
3L	12301722	3L_12301722_SNP [dm3] 3L_12308622_SNP [dm6]	T	C	1.139e^-4	0.939	INTERGENIC
2L	5147641	2L_5147641_SNP [dm3] 2L_5147641_SNP [dm6]	T	A	1.153e^-4	0.939	INTRON Msp300
3R	25100452	3R_25100452_SNP [dm3] 3R_29274730_SNP [dm6]	T	G	1.169e^-4	0.939	INTERGENIC	regulatory region REDfly_CRMs
2L	7290354	2L_7290354_SNP [dm3] 2L_7290354_SNP [dm6]	T	C	1.185e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10903133	2L_10903133_SNP [dm3] 2L_10903133_SNP [dm6]	G	C	1.193e^-4	0.939	DOWNSTREAM CR45724 INTERGENIC
3L	22995681	3L_22995681_SNP [dm3] 3L_23002581_SNP [dm6]	G	A	1.195e^-4	0.939	INTRON nrm
2R	18717318	2R_18717318_SNP [dm3] 2R_22829795_SNP [dm6]	T	C	1.196e^-4	0.939	DOWNSTREAM CG30274 & 1 other INTRON CG30272
2R	9689136	2R_9689136_SNP [dm3] 2R_13801631_SNP [dm6]	G	A	1.203e^-4	0.939	INTRON Cpr50Cb
3R	11424705	3R_11424705_SNP [dm3] 3R_15598983_SNP [dm6]	T	G	1.212e^-4	0.939	INTERGENIC
2R	19326454	2R_19326454_SNP [dm3] 2R_23438931_SNP [dm6]	C	A	1.213e^-4	0.939	DOWNSTREAM Or59a INTERGENIC
2L	9082285	2L_9082285_SNP [dm3] 2L_9082285_SNP [dm6]	A	T	1.213e^-4	0.939	INTERGENIC
3R	9986800	3R_9986800_SNP [dm3] 3R_14161078_SNP [dm6]	A	T	1.214e^-4	0.939	UPSTREAM CG31327 INTERGENIC
2R	10809146	2R_10809146_SNP [dm3] 2R_14921641_SNP [dm6]	C	A	1.220e^-4	0.939	INTRON CG10249
2R	17205564	2R_17205564_INS [dm3] 2R_21318059_INS [dm6]	G	ATAATAAT	1.223e^-4	0.939	UTR_3_PRIME CG33655 INTRON CG9485
3R	21381975	3R_21381975_SNP [dm3] 3R_25556253_SNP [dm6]	C	A	1.224e^-4	0.939	INTRON msi
3R	26055553	3R_26055553_SNP [dm3] 3R_30229831_SNP [dm6]	A	T	1.229e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	24401253	3R_24401253_MNP [dm3] 3R_28575531_MNP [dm6]	CGG	ACA	1.238e^-4	0.939	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
2L	9678705	2L_9678705_SNP [dm3] 2L_9678705_SNP [dm6]	T	A	1.250e^-4	0.939	INTERGENIC
2R	3121062	2R_3121062_SNP [dm3] 2R_7233557_SNP [dm6]	G	A	1.250e^-4	0.939	INTRON Or43a	TF binding site mE1_TFBS_chinmo
2R	17898194	2R_17898194_SNP [dm3] 2R_22010689_SNP [dm6]	G	C	1.255e^-4	0.939	INTRON CG34370
2L	1933011	2L_1933011_SNP [dm3] 2L_1933011_SNP [dm6]	A	C	1.270e^-4	0.939	INTRON CG7337
2L	14572793	2L_14572793_SNP [dm3] 2L_14572793_SNP [dm6]	C	T	1.270e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	9607230	3L_9607230_SNP [dm3] 3L_9614130_SNP [dm6]	G	A	1.276e^-4	0.939	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
X	19994545	X_19994545_SNP [dm3] X_20100512_SNP [dm6]	C	T	1.293e^-4	0.939	INTERGENIC	transposable element FlyBase
2R	18841385	2R_18841385_SNP [dm3] 2R_22953862_SNP [dm6]	C	T	1.293e^-4	0.939	UPSTREAM CR32835 INTERGENIC
3L	14285097	3L_14285097_SNP [dm3] 3L_14291997_SNP [dm6]	A	C	1.295e^-4	0.939	INTRON fz
3R	24269652	3R_24269652_SNP [dm3] 3R_28443930_SNP [dm6]	G	A	1.296e^-4	0.939	INTRON beat-VI
3L	9607218	3L_9607218_SNP [dm3] 3L_9614118_SNP [dm6]	A	T	1.304e^-4	0.939	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	15410513	2L_15410513_SNP [dm3] 2L_15410513_SNP [dm6]	T	G	1.308e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	19621391	3R_19621391_SNP [dm3] 3R_23795669_SNP [dm6]	T	G	1.308e^-4	0.939	INTRON mbc
3L	13974731	3L_13974731_SNP [dm3] 3L_13981631_SNP [dm6]	G	A	1.315e^-4	0.939	UTR_3_PRIME CG17364 INTRON CG17364
2L	6143268	2L_6143268_SNP [dm3] 2L_6143268_SNP [dm6]	C	A	1.329e^-4	0.939	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6329136	2R_6329136_SNP [dm3] 2R_10441631_SNP [dm6]	T	C	1.336e^-4	0.939	INTRON Galphao	TF binding site mE1_TFBS_cad
3L	14081572	3L_14081572_SNP [dm3] 3L_14088472_SNP [dm6]	C	A	1.343e^-4	0.939	INTERGENIC
2L	9091760	2L_9091760_SNP [dm3] 2L_9091760_SNP [dm6]	A	C	1.355e^-4	0.939	INTERGENIC
3L	17998213	3L_17998213_DEL [dm3] 3L_18005113_DEL [dm6]	TT	T	1.357e^-4	0.939	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	25718300	3R_25718300_SNP [dm3] 3R_29892578_SNP [dm6]	A	T	1.361e^-4	0.939	INTRON CG31038
2L	10614164	2L_10614164_SNP [dm3] 2L_10614164_SNP [dm6]	A	G	1.375e^-4	0.939	INTRON Trim9
3R	21386845	3R_21386845_SNP [dm3] 3R_25561123_SNP [dm6]	A	T	1.376e^-4	0.939	INTRON msi
3L	17678137	3L_17678137_SNP [dm3] 3L_17685037_SNP [dm6]	A	C	1.382e^-4	0.939	INTERGENIC
2L	4329695	2L_4329695_SNP [dm3] 2L_4329695_SNP [dm6]	C	T	1.385e^-4	0.939	SYNONYMOUS_CODING CG16857	TF binding site mE1_TFBS_chinmo
3R	24800516	3R_24800516_SNP [dm3] 3R_28974794_SNP [dm6]	C	A	1.393e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15462133	2R_15462133_SNP [dm3] 2R_19574628_SNP [dm6]	G	T	1.422e^-4	0.939	INTRON sm
3R	22613955	3R_22613955_DEL [dm3] 3R_26788233_DEL [dm6]	GG	G	1.425e^-4	0.939	INTERGENIC
2L	15111873	2L_15111873_SNP [dm3] 2L_15111873_SNP [dm6]	G	A	1.428e^-4	0.939	INTRON CG15269	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	1917332	2L_1917332_SNP [dm3] 2L_1917332_SNP [dm6]	T	A	1.432e^-4	0.939	INTRON CG7337
2R	15943587	2R_15943587_SNP [dm3] 2R_20056082_SNP [dm6]	A	G	1.433e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	17418772	2R_17418772_SNP [dm3] 2R_21531267_SNP [dm6]	C	T	1.435e^-4	0.939	DOWNSTREAM CR44725 INTRON Egfr	TF binding site mE1_TFBS_chinmo
2L	5340790	2L_5340790_SNP [dm3] 2L_5340790_SNP [dm6]	T	C	1.448e^-4	0.939	SYNONYMOUS_CODING CG12512	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27604694	3R_27604694_SNP [dm3] 3R_31778972_SNP [dm6]	C	A	1.449e^-4	0.939	INTRON faf
3L	13586322	3L_13586322_SNP [dm3] 3L_13593222_SNP [dm6]	A	T	1.463e^-4	0.939	INTRON bru-3
2R	15397992	2R_15397992_SNP [dm3] 2R_19510487_SNP [dm6]	A	G	1.465e^-4	0.939	SYNONYMOUS_CODING Ir56c DOWNSTREAM Ir56b
2R	6078098	2R_6078098_SNP [dm3] 2R_10190593_SNP [dm6]	T	C	1.468e^-4	0.939	INTRON KCNQ	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25230074	3R_25230074_SNP [dm3] 3R_29404352_SNP [dm6]	C	T	1.475e^-4	0.939	INTRON Ptp99A
3R	11424706	3R_11424706_SNP [dm3] 3R_15598984_SNP [dm6]	C	T	1.477e^-4	0.939	INTERGENIC
2R	7377175	2R_7377175_SNP [dm3] 2R_11489670_SNP [dm6]	T	A	1.489e^-4	0.939	INTRON inv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20316295	2R_20316295_SNP [dm3] 2R_24428772_SNP [dm6]	C	G	1.491e^-4	0.939	UPSTREAM prom DOWNSTREAM CG15873 INTERGENIC
3R	8447605	3R_8447605_SNP [dm3] 3R_12621883_SNP [dm6]	C	G	1.495e^-4	0.939	INTERGENIC
3L	6735916	3L_6735916_SNP [dm3] 3L_6742816_SNP [dm6]	C	T	1.508e^-4	0.939	UPSTREAM dikar INTRON dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	17899096	2R_17899096_SNP [dm3] 2R_22011591_SNP [dm6]	A	C	1.510e^-4	0.939	INTRON CG34370
2R	16423219	2R_16423219_SNP [dm3] 2R_20535714_SNP [dm6]	G	A	1.528e^-4	0.939	UTR_3_PRIME CG18067 UPSTREAM CG13423 DOWNSTREAM CG18067
2R	4353586	2R_4353586_SNP [dm3] 2R_8466081_SNP [dm6]	T	C	1.530e^-4	0.939	SYNONYMOUS_CODING Mal-A6 DOWNSTREAM Mal-A5	TF binding site mE1_TFBS_chinmo
3R	21363356	3R_21363356_SNP [dm3] 3R_25537634_SNP [dm6]	G	A	1.542e^-4	0.939	INTRON msi
X	19420312	X_19420312_SNP [dm3] X_19526279_SNP [dm6]	C	T	1.542e^-4	0.939	DOWNSTREAM CoRest INTRON CoRest
X	4511935	X_4511935_SNP [dm3] X_4617902_SNP [dm6]	G	A	1.550e^-4	0.939	UTR_5_PRIME peb	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12026959	3L_12026959_SNP [dm3] 3L_12033859_SNP [dm6]	T	C	1.552e^-4	0.939	DOWNSTREAM CG43993 INTRON rols
X	16613520	X_16613520_SNP [dm3] X_16719487_SNP [dm6]	A	G	1.557e^-4	0.939	INTRON CG34325	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	3768766	3L_3768766_SNP [dm3] 3L_3768766_SNP [dm6]	A	G	1.558e^-4	0.939	INTRON CG32264	TF binding site BDTNP1_TFBS_dl
2L	11100971	2L_11100971_SNP [dm3] 2L_11100971_SNP [dm6]	C	T	1.568e^-4	0.939	UTR_3_PRIME Reps UPSTREAM Ge-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	24977869	3R_24977869_SNP [dm3] 3R_29152147_SNP [dm6]	G	T	1.570e^-4	0.939	UTR_3_PRIME Slbp UPSTREAM ligatin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1888637	2L_1888637_SNP [dm3] 2L_1888637_SNP [dm6]	C	T	1.571e^-4	0.939	INTRON CG7337
2L	14082673	2L_14082673_SNP [dm3] 2L_14082673_SNP [dm6]	G	T	1.572e^-4	0.939	INTRON nAChRalpha5	TF binding site mE1_TFBS_zfh1
2R	8904741	2R_8904741_SNP [dm3] 2R_13017236_SNP [dm6]	T	C	1.581e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	15902447	3L_15902447_SNP [dm3] 3L_15909347_SNP [dm6]	T	A	1.586e^-4	0.939	INTRON sff
2R	19407363	2R_19407363_SNP [dm3] 2R_23519840_SNP [dm6]	C	T	1.587e^-4	0.939	UTR_3_PRIME RabX1
3L	20163985	3L_20163985_SNP [dm3] 3L_20170885_SNP [dm6]	T	A	1.591e^-4	0.939	INTRON CG42674	TF binding site BDTNP1_TFBS_twi
2L	1946704	2L_1946704_SNP [dm3] 2L_1946704_SNP [dm6]	A	G	1.600e^-4	0.939	UTR_5_PRIME CG33673 UPSTREAM CG15357	regulatory region REDfly_CRMs
2R	6930113	2R_6930113_SNP [dm3] 2R_11042608_SNP [dm6]	G	A	1.613e^-4	0.939	INTRON luna	TF binding site mE1_TFBS_cad
2R	15204364	2R_15204364_SNP [dm3] 2R_19316859_SNP [dm6]	C	T	1.613e^-4	0.939	INTRON Rgk1
2R	18198145	2R_18198145_SNP [dm3] 2R_22310640_SNP [dm6]	T	G	1.615e^-4	0.939	UPSTREAM wdp INTRON wdp
2L	4043118	2L_4043118_SNP [dm3] 2L_4043118_SNP [dm6]	A	G	1.619e^-4	0.939	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12995734	X_12995734_SNP [dm3] X_13101701_SNP [dm6]	T	A	1.628e^-4	0.939	INTRON CG43313
3L	3769264	3L_3769264_SNP [dm3] 3L_3769264_SNP [dm6]	C	T	1.631e^-4	0.939	SYNONYMOUS_CODING CG32264
2R	17905656	2R_17905656_SNP [dm3] 2R_22018151_SNP [dm6]	A	T	1.638e^-4	0.939	INTRON CG34370
3R	6255597	3R_6255597_SNP [dm3] 3R_10429875_SNP [dm6]	T	C	1.640e^-4	0.939	INTERGENIC
3L	9607130	3L_9607130_DEL [dm3] 3L_9614030_DEL [dm6]	CA	T	1.649e^-4	0.939	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	17422210	3L_17422210_SNP [dm3] 3L_17429110_SNP [dm6]	C	A	1.658e^-4	0.939	UTR_3_PRIME CG32174 & 1 other UPSTREAM CG33052	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
X	4511064	X_4511064_SNP [dm3] X_4617031_SNP [dm6]	C	A	1.666e^-4	0.939	UPSTREAM peb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	9678709	2L_9678709_SNP [dm3] 2L_9678709_SNP [dm6]	C	T	1.669e^-4	0.939	INTERGENIC
3R	14187087	3R_14187087_SNP [dm3] 3R_18361365_SNP [dm6]	G	A	1.671e^-4	0.939	UPSTREAM CG15803 & 1 other DOWNSTREAM CR45634 INTERGENIC
3L	10977363	3L_10977363_SNP [dm3] 3L_10984263_SNP [dm6]	A	C	1.676e^-4	0.939	SYNONYMOUS_CODING klu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20216022	3L_20216022_SNP [dm3] 3L_20222922_SNP [dm6]	G	T	1.678e^-4	0.939	UTR_3_PRIME CG17145	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	12685948	2R_12685948_SNP [dm3] 2R_16798443_SNP [dm6]	C	G	1.695e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_inv
X	21367063	X_21367063_SNP [dm3] X_21496036_SNP [dm6]	C	T	1.698e^-4	0.939	DOWNSTREAM CR45082 INTERGENIC
2L	9088879	2L_9088879_SNP [dm3] 2L_9088879_SNP [dm6]	A	G	1.698e^-4	0.939	SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	20216062	3L_20216062_SNP [dm3] 3L_20222962_SNP [dm6]	T	G	1.699e^-4	0.939	UTR_3_PRIME CG17145 UPSTREAM CG17147	TF binding site mE1_TFBS_cad
2L	9095769	2L_9095769_SNP [dm3] 2L_9095769_SNP [dm6]	T	A	1.705e^-4	0.939	INTERGENIC
X	14540853	X_14540853_SNP [dm3] X_14646820_SNP [dm6]	T	C	1.705e^-4	0.939	INTRON NetA	TF binding site BDTNP1_TFBS_twi
3L	3768324	3L_3768324_SNP [dm3] 3L_3768324_SNP [dm6]	A	T	1.715e^-4	0.939	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	18989506	3R_18989506_SNP [dm3] 3R_23163784_SNP [dm6]	T	C	1.724e^-4	0.939	INTERGENIC
2L	6541507	2L_6541507_SNP [dm3] 2L_6541507_SNP [dm6]	G	A	1.728e^-4	0.939	INTRON eya	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2L	15320453	2L_15320453_SNP [dm3] 2L_15320453_SNP [dm6]	C	T	1.741e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1917256	2L_1917256_SNP [dm3] 2L_1917256_SNP [dm6]	G	A	1.746e^-4	0.939	INTRON CG7337
2L	3522756	2L_3522756_SNP [dm3] 2L_3522756_SNP [dm6]	C	G	1.747e^-4	0.939	SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
3R	7553864	3R_7553864_SNP [dm3] 3R_11728142_SNP [dm6]	G	T	1.747e^-4	0.939	INTRON CG12594	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11312844	2L_11312844_SNP [dm3] 2L_11312844_SNP [dm6]	C	T	1.748e^-4	0.939	INTERGENIC
3L	6733018	3L_6733018_SNP [dm3] 3L_6739918_SNP [dm6]	G	A	1.752e^-4	0.939	SYNONYMOUS_CODING dikar UTR_3_PRIME dikar DOWNSTREAM dikar
3L	10284310	3L_10284310_SNP [dm3] 3L_10291210_SNP [dm6]	T	C	1.776e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16977352	3L_16977352_SNP [dm3] 3L_16984252_SNP [dm6]	T	A	1.777e^-4	0.939	INTRON Exn
2R	9690776	2R_9690776_SNP [dm3] 2R_13803271_SNP [dm6]	G	A	1.799e^-4	0.939	INTRON Cpr50Cb	TF binding site mE1_TFBS_cad
3R	27315565	3R_27315565_SNP [dm3] 3R_31489843_SNP [dm6]	A	T	1.803e^-4	0.939	INTERGENIC
3R	17445688	3R_17445688_INS [dm3] 3R_21619966_INS [dm6]	T	TACTGCTTT	1.804e^-4	0.939	UPSTREAM InR DOWNSTREAM E2f INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	16236871	2L_16236871_SNP [dm3] 2L_16236871_SNP [dm6]	C	A	1.813e^-4	0.939	SYNONYMOUS_CODING CG42817
3R	16978826	3R_16978826_SNP [dm3] 3R_21153104_SNP [dm6]	G	C	1.819e^-4	0.939	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24353929	3R_24353929_SNP [dm3] 3R_28528207_SNP [dm6]	C	A	1.819e^-4	0.939	NON_SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2575102	2L_2575102_SNP [dm3] 2L_2575102_SNP [dm6]	T	C	1.826e^-4	0.939	UPSTREAM Rad1 & 1 other DOWNSTREAM insv INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25291514	3R_25291514_SNP [dm3] 3R_29465792_SNP [dm6]	A	G	1.831e^-4	0.939	INTRON Ptp99A
2R	3135192	2R_3135192_SNP [dm3] 2R_7247687_SNP [dm6]	T	A	1.840e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_cad
2L	16590626	2L_16590626_SNP [dm3] 2L_16590626_SNP [dm6]	G	C	1.841e^-4	0.939	INTRON CG42389
3R	15748250	3R_15748250_SNP [dm3] 3R_19922528_SNP [dm6]	A	G	1.850e^-4	0.939	UPSTREAM CR43282 INTRON CG4462
X	6424690	X_6424690_SNP [dm3] X_6530657_SNP [dm6]	A	C	1.864e^-4	0.939	SYNONYMOUS_CODING Spat DOWNSTREAM RpL7A & 1 other	TF binding site mE1_TFBS_cad
3L	3863358	3L_3863358_SNP [dm3] 3L_3863358_SNP [dm6]	G	A	1.865e^-4	0.939	DOWNSTREAM CR45379 INTERGENIC
2L	14082661	2L_14082661_SNP [dm3] 2L_14082661_SNP [dm6]	C	G	1.874e^-4	0.939	INTRON nAChRalpha5	TF binding site mE1_TFBS_zfh1
X	17051209	X_17051209_SNP [dm3] X_17157176_SNP [dm6]	G	A	1.888e^-4	0.939	NON_SYNONYMOUS_CODING xmas-2	TF binding site mE1_TFBS_chinmo
2L	9089883	2L_9089883_INS [dm3] 2L_9089883_INS [dm6]	T	TT	1.893e^-4	0.939	DOWNSTREAM Toll-4 INTERGENIC
2R	8197393	2R_8197393_SNP [dm3] 2R_12309888_SNP [dm6]	G	C	1.903e^-4	0.939	SYNONYMOUS_CODING CG17739 UPSTREAM CG30203	TF binding site mE1_TFBS_chinmo
3R	18627091	3R_18627091_SNP [dm3] 3R_22801369_SNP [dm6]	C	T	1.914e^-4	0.939	INTERGENIC
3L	10740570	3L_10740570_SNP [dm3] 3L_10747470_SNP [dm6]	C	G	1.928e^-4	0.939	INTERGENIC
3L	14432737	3L_14432737_SNP [dm3] 3L_14439637_SNP [dm6]	T	C	1.930e^-4	0.939	INTRON bbg
3R	22640320	3R_22640320_SNP [dm3] 3R_26814598_SNP [dm6]	G	A	1.932e^-4	0.939	INTRON Tl
2R	10223310	2R_10223310_DEL [dm3] 2R_14335805_DEL [dm6]	TTGGGTAGCTT...	T	1.935e^-4	0.939	INTRON Shroom
3R	18989505	3R_18989505_SNP [dm3] 3R_23163783_SNP [dm6]	A	G	1.939e^-4	0.939	INTERGENIC
2R	6545426	2R_6545426_SNP [dm3] 2R_10657921_SNP [dm6]	G	A	1.939e^-4	0.939	UPSTREAM CR44452 INTERGENIC
2R	10509501	2R_10509501_INS [dm3] 2R_14621996_INS [dm6]	G	GAG	1.948e^-4	0.939	UPSTREAM snoRNA:Me28S-C3227a & 4 others DOWNSTREAM snoRNA:Me18S-C1366 EXON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2L	2618403	2L_2618403_SNP [dm3] 2L_2618403_SNP [dm6]	C	T	1.949e^-4	0.939	INTERGENIC
3L	20216234	3L_20216234_SNP [dm3] 3L_20223134_SNP [dm6]	A	T	1.950e^-4	0.939	UTR_3_PRIME CG17145 UPSTREAM CG17147 DOWNSTREAM CG17145	TF binding site mE1_TFBS_cad
X	4579511	X_4579511_SNP [dm3] X_4685478_SNP [dm6]	A	T	1.950e^-4	0.939	NON_SYNONYMOUS_CODING Pp2C1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17408862	2R_17408862_SNP [dm3] 2R_21521357_SNP [dm6]	T	A	1.953e^-4	0.939	NON_SYNONYMOUS_CODING CG30289 UPSTREAM CG30288	TF binding site BDTNP1_TFBS_dl
2R	9688949	2R_9688949_SNP [dm3] 2R_13801444_SNP [dm6]	A	G	1.962e^-4	0.939	INTRON Cpr50Cb
2L	1917406	2L_1917406_SNP [dm3] 2L_1917406_SNP [dm6]	G	T	1.963e^-4	0.939	INTRON CG7337
3L	17999285	3L_17999285_SNP [dm3] 3L_18006185_SNP [dm6]	C	A	1.991e^-4	0.939	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8357791	2L_8357791_SNP [dm3] 2L_8357791_SNP [dm6]	A	C	1.999e^-4	0.939	SYNONYMOUS_CODING CG7627
2R	12681083	2R_12681083_SNP [dm3] 2R_16793578_SNP [dm6]	G	C	2.004e^-4	0.939	SYNONYMOUS_CODING CG15615 DOWNSTREAM CG15919
X	16750915	X_16750915_SNP [dm3] X_16856882_SNP [dm6]	T	C	2.012e^-4	0.939	INTRON CG13003	TF binding site mE1_TFBS_inv
X	7733433	X_7733433_SNP [dm3] X_7839400_SNP [dm6]	G	T	2.013e^-4	0.939	INTRON CG1402
3L	10281019	3L_10281019_SNP [dm3] 3L_10287919_SNP [dm6]	G	A	2.019e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10370011	3R_10370011_SNP [dm3] 3R_14544289_SNP [dm6]	T	C	2.024e^-4	0.939	INTRON Pde6
3L	20163977	3L_20163977_SNP [dm3] 3L_20170877_SNP [dm6]	T	A	2.029e^-4	0.939	INTRON CG42674	TF binding site BDTNP1_TFBS_twi
3R	20503175	3R_20503175_SNP [dm3] 3R_24677453_SNP [dm6]	T	C	2.034e^-4	0.939	INTRON slo
2L	10060821	2L_10060821_SNP [dm3] 2L_10060821_SNP [dm6]	T	C	2.044e^-4	0.939	UTR_5_PRIME Spn31A DOWNSTREAM Pen
3L	8357215	3L_8357215_SNP [dm3] 3L_8364115_SNP [dm6]	G	A	2.046e^-4	0.939	INTERGENIC
3L	10284340	3L_10284340_SNP [dm3] 3L_10291240_SNP [dm6]	T	G	2.054e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10285449	3L_10285449_SNP [dm3] 3L_10292349_SNP [dm6]	T	A	2.054e^-4	0.939	INTERGENIC
2L	8658503	2L_8658503_SNP [dm3] 2L_8658503_SNP [dm6]	A	T	2.055e^-4	0.939	INTRON Sema-1a
X	15185632	X_15185632_SNP [dm3] X_15291599_SNP [dm6]	A	G	2.057e^-4	0.939	DOWNSTREAM CR44664 INTERGENIC
3L	17412324	3L_17412324_SNP [dm3] 3L_17419224_SNP [dm6]	A	G	2.064e^-4	0.939	INTRON blot	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	21905894	3R_21905894_SNP [dm3] 3R_26080172_SNP [dm6]	C	G	2.064e^-4	0.939	INTRON dys
2R	18417627	2R_18417627_INS [dm3] 2R_22530122_INS [dm6]	T	TTGAT	2.075e^-4	0.939	INTRON px
3L	15854838	3L_15854838_SNP [dm3] 3L_15861738_SNP [dm6]	G	C	2.077e^-4	0.939	INTRON pHCl
2R	12890569	2R_12890569_SNP [dm3] 2R_17003064_SNP [dm6]	A	C	2.090e^-4	0.939	NON_SYNONYMOUS_CODING CG6796 DOWNSTREAM NiPp1	TF binding site mE1_TFBS_sens
3R	11239998	3R_11239998_SNP [dm3] 3R_15414276_SNP [dm6]	C	G	2.092e^-4	0.939	NON_SYNONYMOUS_CODING Atx2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25221537	3R_25221537_DEL [dm3] 3R_29395815_DEL [dm6]	GTG	G	2.105e^-4	0.939	INTRON Ptp99A
2L	9082349	2L_9082349_SNP [dm3] 2L_9082349_SNP [dm6]	T	A	2.111e^-4	0.939	INTERGENIC
3L	20164205	3L_20164205_SNP [dm3] 3L_20171105_SNP [dm6]	G	A	2.114e^-4	0.939	INTRON CG42674	TF binding site BDTNP1_TFBS_twi
2L	1888640	2L_1888640_SNP [dm3] 2L_1888640_SNP [dm6]	T	G	2.116e^-4	0.939	INTRON CG7337
2L	18256653	2L_18256653_SNP [dm3] 2L_18256653_SNP [dm6]	G	T	2.123e^-4	0.939	DOWNSTREAM CG31788 INTRON CG42750 EXON CR43408
X	17894069	X_17894069_SNP [dm3] X_18000036_SNP [dm6]	C	A	2.130e^-4	0.939	INTRON Sh
2L	10796381	2L_10796381_SNP [dm3] 2L_10796381_SNP [dm6]	T	A	2.134e^-4	0.939	INTRON CG31869
2L	7524733	2L_7524733_SNP [dm3] 2L_7524733_SNP [dm6]	C	T	2.144e^-4	0.939	INTRON RapGAP1
X	9804140	X_9804140_SNP [dm3] X_9910107_SNP [dm6]	G	A	2.145e^-4	0.939	SYNONYMOUS_CODING CG1986	TF binding site mE1_TFBS_chinmo
3R	20805849	3R_20805849_SNP [dm3] 3R_24980127_SNP [dm6]	G	C	2.150e^-4	0.939	INTERGENIC
3R	26122270	3R_26122270_SNP [dm3] 3R_30296548_SNP [dm6]	C	T	2.153e^-4	0.939	INTRON hdc
2L	20208988	2L_20208988_SNP [dm3] 2L_20208988_SNP [dm6]	C	A	2.156e^-4	0.939	INTERGENIC	transposable element FlyBase
3R	27599866	3R_27599866_SNP [dm3] 3R_31774144_SNP [dm6]	C	T	2.159e^-4	0.939	SYNONYMOUS_CODING sip3 DOWNSTREAM CG2126	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5646735	2R_5646735_SNP [dm3] 2R_9759230_SNP [dm6]	C	T	2.167e^-4	0.939	INTRON trpl
2R	5646730	2R_5646730_SNP [dm3] 2R_9759225_SNP [dm6]	G	T	2.182e^-4	0.939	INTRON trpl
X	5414360	X_5414360_SNP [dm3] X_5520327_SNP [dm6]	A	G	2.184e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10285463	3L_10285463_SNP [dm3] 3L_10292363_SNP [dm6]	C	T	2.186e^-4	0.939	INTERGENIC
3L	17998638	3L_17998638_DEL [dm3] 3L_18005538_DEL [dm6]	CCC	C	2.186e^-4	0.939	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19621390	3R_19621390_SNP [dm3] 3R_23795668_SNP [dm6]	A	T	2.187e^-4	0.939	INTRON mbc
2L	16599134	2L_16599134_SNP [dm3] 2L_16599134_SNP [dm6]	T	A	2.188e^-4	0.939	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
3L	6732417	3L_6732417_SNP [dm3] 3L_6739317_SNP [dm6]	G	A	2.195e^-4	0.939	NON_SYNONYMOUS_CODING dikar UTR_3_PRIME dikar DOWNSTREAM dikar
3L	3731314	3L_3731314_SNP [dm3] 3L_3731314_SNP [dm6]	T	C	2.196e^-4	0.939	INTRON CG32264
2L	14082573	2L_14082573_SNP [dm3] 2L_14082573_SNP [dm6]	A	C	2.202e^-4	0.939	INTRON nAChRalpha5	TF binding site mE1_TFBS_zfh1
2L	1917440	2L_1917440_SNP [dm3] 2L_1917440_SNP [dm6]	C	T	2.203e^-4	0.939	INTRON CG7337
3R	11004639	3R_11004639_SNP [dm3] 3R_15178917_SNP [dm6]	T	C	2.209e^-4	0.939	INTRON Gyc88E & 1 other
3R	24465401	3R_24465401_SNP [dm3] 3R_28639679_SNP [dm6]	C	T	2.218e^-4	0.939	DOWNSTREAM CG9988 INTERGENIC
2L	3915958	2L_3915958_SNP [dm3] 2L_3915958_SNP [dm6]	T	C	2.218e^-4	0.939	INTRON fred
2R	17446503	2R_17446503_SNP [dm3] 2R_21558998_SNP [dm6]	G	C	2.218e^-4	0.939	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	16667721	2R_16667721_SNP [dm3] 2R_20780216_SNP [dm6]	G	A	2.235e^-4	0.939	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC	TF binding site mE1_TFBS_sens
2R	17899039	2R_17899039_SNP [dm3] 2R_22011534_SNP [dm6]	G	A	2.243e^-4	0.939	INTRON CG34370
X	14266859	X_14266859_SNP [dm3] X_14372826_SNP [dm6]	T	G	2.243e^-4	0.939	INTRON dpr8
3R	25222889	3R_25222889_SNP [dm3] 3R_29397167_SNP [dm6]	G	T	2.246e^-4	0.939	INTRON Ptp99A
3R	8908619	3R_8908619_SNP [dm3] 3R_13082897_SNP [dm6]	A	G	2.248e^-4	0.939	INTERGENIC
3L	12262498	3L_12262498_SNP [dm3] 3L_12269398_SNP [dm6]	A	T	2.253e^-4	0.939	UTR_3_PRIME CG32100 DOWNSTREAM Pbgs
3R	27601994	3R_27601994_SNP [dm3] 3R_31776272_SNP [dm6]	A	T	2.255e^-4	0.939	SYNONYMOUS_CODING CG2126 UPSTREAM faf	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	6733698	3L_6733698_SNP [dm3] 3L_6740598_SNP [dm6]	G	C	2.255e^-4	0.939	UTR_3_PRIME dikar INTRON dikar
3R	8938978	3R_8938978_SNP [dm3] 3R_13113256_SNP [dm6]	C	A	2.257e^-4	0.939	INTRON timeout
X	16032689	X_16032689_SNP [dm3] X_16138656_SNP [dm6]	C	T	2.260e^-4	0.939	INTRON disco-r	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	20068446	2L_20068446_SNP [dm3] 2L_20068446_SNP [dm6]	T	A	2.262e^-4	0.939	DOWNSTREAM CR44907 INTRON bwa
3R	3077871	3R_3077871_SNP [dm3] 3R_7252149_SNP [dm6]	A	T	2.268e^-4	0.939	UTR_3_PRIME Gld UPSTREAM Obp84a DOWNSTREAM CG10050
3L	777034	3L_777034_SNP [dm3] 3L_777034_SNP [dm6]	C	G	2.269e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6733657	3L_6733657_SNP [dm3] 3L_6740557_SNP [dm6]	G	A	2.272e^-4	0.939	UTR_3_PRIME dikar INTRON dikar
3L	17998206	3L_17998206_SNP [dm3] 3L_18005106_SNP [dm6]	G	A	2.274e^-4	0.939	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
X	21367254	X_21367254_SNP [dm3] X_21496227_SNP [dm6]	G	A	2.275e^-4	0.939	DOWNSTREAM CR45082 INTERGENIC
2L	15410581	2L_15410581_SNP [dm3] 2L_15410581_SNP [dm6]	C	A	2.277e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	8904773	2R_8904773_SNP [dm3] 2R_13017268_SNP [dm6]	G	C	2.282e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	27598508	3R_27598508_SNP [dm3] 3R_31772786_SNP [dm6]	G	A	2.288e^-4	0.939	SYNONYMOUS_CODING sip3 UPSTREAM CG2135	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17165113	2L_17165113_SNP [dm3] 2L_17165113_SNP [dm6]	A	G	2.295e^-4	0.939	INTRON beat-IIIa & 1 other
2R	3130984	2R_3130984_INS [dm3] 2R_7243479_INS [dm6]	T	TTTCATCATTCATTT...	2.296e^-4	0.939	UTR_3_PRIME Ady43A	TF binding site mE1_TFBS_cad
2L	10091945	2L_10091945_SNP [dm3] 2L_10091945_SNP [dm6]	C	T	2.301e^-4	0.939	SYNONYMOUS_CODING CG13133 INTRON CG44153	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17494962	2R_17494962_DEL [dm3] 2R_21607457_DEL [dm6]	ACCGTTGACCCTTTTATCGA...	A	2.304e^-4	0.939	UPSTREAM CR43243 & 1 other DOWNSTREAM CG15673 INTRON CG10433	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8897904	2R_8897904_SNP [dm3] 2R_13010399_SNP [dm6]	T	G	2.306e^-4	0.939	INTERGENIC
X	6424657	X_6424657_SNP [dm3] X_6530624_SNP [dm6]	T	C	2.309e^-4	0.939	SYNONYMOUS_CODING Spat DOWNSTREAM RpL7A	TF binding site mE1_TFBS_cad
2R	18993356	2R_18993356_SNP [dm3] 2R_23105833_SNP [dm6]	C	T	2.324e^-4	0.939	UPSTREAM Gr59d INTERGENIC
X	4704385	X_4704385_SNP [dm3] X_4810352_SNP [dm6]	G	A	2.327e^-4	0.939	INTERGENIC
3R	10347864	3R_10347864_SNP [dm3] 3R_14522142_SNP [dm6]	A	T	2.328e^-4	0.939	INTRON Pde6 & 1 other
3R	24976041	3R_24976041_SNP [dm3] 3R_29150319_SNP [dm6]	A	G	2.328e^-4	0.939	NON_SYNONYMOUS_CODING ligatin DOWNSTREAM Pglym78	TF binding site mE1_TFBS_chinmo
3R	23199454	3R_23199454_SNP [dm3] 3R_27373732_SNP [dm6]	A	G	2.330e^-4	0.939	INTERGENIC
3L	9214537	3L_9214537_SNP [dm3] 3L_9221437_SNP [dm6]	G	A	2.340e^-4	0.939	UPSTREAM CR45408 INTERGENIC
2L	16219790	2L_16219790_SNP [dm3] 2L_16219790_SNP [dm6]	C	T	2.342e^-4	0.939	INTERGENIC
3R	21385713	3R_21385713_SNP [dm3] 3R_25559991_SNP [dm6]	A	C	2.344e^-4	0.939	INTRON msi
2L	17603592	2L_17603592_INS [dm3] 2L_17603592_INS [dm6]	A	ATG	2.347e^-4	0.939	UTR_3_PRIME Sytalpha	TF binding site mE1_TFBS_bab1
2R	15462077	2R_15462077_SNP [dm3] 2R_19574572_SNP [dm6]	C	G	2.351e^-4	0.939	INTRON sm
3L	5589234	3L_5589234_SNP [dm3] 3L_5596134_SNP [dm6]	A	G	2.354e^-4	0.939	SYNONYMOUS_CODING CG5150 UPSTREAM CG10592	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15410458	2L_15410458_SNP [dm3] 2L_15410458_SNP [dm6]	T	C	2.360e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3979442	2L_3979442_DEL [dm3] 2L_3979442_DEL [dm6]	CC	C	2.362e^-4	0.939	INTRON fred
X	9111356	X_9111356_SNP [dm3] X_9217323_SNP [dm6]	A	G	2.365e^-4	0.939	SYNONYMOUS_CODING CG15369 DOWNSTREAM CG15368 & 1 other
3R	15748848	3R_15748848_SNP [dm3] 3R_19923126_SNP [dm6]	A	G	2.366e^-4	0.939	SYNONYMOUS_CODING CG4462	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17684104	3R_17684104_SNP [dm3] 3R_21858382_SNP [dm6]	G	C	2.368e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	27602552	3R_27602552_SNP [dm3] 3R_31776830_SNP [dm6]	T	C	2.372e^-4	0.939	UPSTREAM faf & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12317712	2R_12317712_SNP [dm3] 2R_16430207_SNP [dm6]	T	C	2.375e^-4	0.939	UTR_3_PRIME Sema-2b
3L	18007236	3L_18007236_SNP [dm3] 3L_18014136_SNP [dm6]	T	C	2.376e^-4	0.939	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	21385631	3R_21385631_SNP [dm3] 3R_25559909_SNP [dm6]	G	C	2.384e^-4	0.939	INTRON msi
2L	9138958	2L_9138958_SNP [dm3] 2L_9138958_SNP [dm6]	A	G	2.385e^-4	0.939	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3078001	3R_3078001_SNP [dm3] 3R_7252279_SNP [dm6]	C	A	2.394e^-4	0.939	UTR_3_PRIME Gld UPSTREAM Obp84a DOWNSTREAM CG10050
3R	13123658	3R_13123658_DEL [dm3] 3R_17297936_DEL [dm6]	CGC	C	2.396e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	16950618	3L_16950618_SNP [dm3] 3L_16957518_SNP [dm6]	C	A	2.409e^-4	0.939	UTR_5_PRIME Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18198144	2R_18198144_SNP [dm3] 2R_22310639_SNP [dm6]	G	T	2.412e^-4	0.939	UPSTREAM wdp INTRON wdp
2L	3834762	2L_3834762_SNP [dm3] 2L_3834762_SNP [dm6]	G	T	2.414e^-4	0.939	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	7251698	2L_7251698_SNP [dm3] 2L_7251698_SNP [dm6]	A	C	2.418e^-4	0.939	STOP_GAINED CG13786	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	3731605	3L_3731605_SNP [dm3] 3L_3731605_SNP [dm6]	G	A	2.423e^-4	0.939	INTRON CG32264
3R	11424710	3R_11424710_SNP [dm3] 3R_15598988_SNP [dm6]	G	T	2.426e^-4	0.939	INTERGENIC
2L	15156518	2L_15156518_SNP [dm3] 2L_15156518_SNP [dm6]	C	T	2.429e^-4	0.939	INTERGENIC
X	16032341	X_16032341_SNP [dm3] X_16138308_SNP [dm6]	G	T	2.429e^-4	0.939	INTRON disco-r
2L	15170005	2L_15170005_SNP [dm3] 2L_15170005_SNP [dm6]	G	A	2.444e^-4	0.939	INTRON CG4168
3L	10284393	3L_10284393_SNP [dm3] 3L_10291293_SNP [dm6]	C	T	2.451e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16423224	2R_16423224_SNP [dm3] 2R_20535719_SNP [dm6]	C	G	2.453e^-4	0.939	UTR_3_PRIME CG18067 UPSTREAM CG13423 DOWNSTREAM CG18067
X	5728467	X_5728467_SNP [dm3] X_5834434_SNP [dm6]	T	C	2.460e^-4	0.939	SYNONYMOUS_CODING CG15765
2R	6627169	2R_6627169_SNP [dm3] 2R_10739664_SNP [dm6]	G	A	2.462e^-4	0.939	SYNONYMOUS_CODING Mat1 DOWNSTREAM CG33144	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	21896261	X_21896261_SNP [dm3] X_22494425_SNP [dm6]	A	T	2.483e^-4	0.939	INTRON l_1_G0196
2L	4043112	2L_4043112_SNP [dm3] 2L_4043112_SNP [dm6]	A	C	2.495e^-4	0.939	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19463924	3L_19463924_SNP [dm3] 3L_19470824_SNP [dm6]	G	T	2.500e^-4	0.939	DOWNSTREAM 825-Oak INTERGENIC	transposable element FlyBase
2R	9271220	2R_9271220_SNP [dm3] 2R_13383715_SNP [dm6]	G	C	2.503e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5016135	X_5016135_INS [dm3] X_5122102_INS [dm6]	T	TT	2.523e^-4	0.939	INTRON rg & 1 other
2R	14155043	2R_14155043_SNP [dm3] 2R_18267538_SNP [dm6]	A	C	2.523e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	14056479	3R_14056479_SNP [dm3] 3R_18230757_SNP [dm6]	G	A	2.528e^-4	0.939	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11378351	3L_11378351_SNP [dm3] 3L_11385251_SNP [dm6]	A	T	2.535e^-4	0.939	UPSTREAM CR42755 INTERGENIC	TF binding site mE1_TFBS_inv
3R	26622603	3R_26622603_SNP [dm3] 3R_30796881_SNP [dm6]	G	A	2.545e^-4	0.939	INTRON wts
2R	6141373	2R_6141373_SNP [dm3] 2R_10253868_SNP [dm6]	C	T	2.556e^-4	0.939	SYNONYMOUS_CODING CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	17678020	3L_17678020_SNP [dm3] 3L_17684920_SNP [dm6]	C	T	2.558e^-4	0.939	INTERGENIC
2R	6141540	2R_6141540_SNP [dm3] 2R_10254035_SNP [dm6]	G	T	2.571e^-4	0.939	INTRON CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	11100371	2L_11100371_SNP [dm3] 2L_11100371_SNP [dm6]	C	A	2.587e^-4	0.939	SYNONYMOUS_CODING Ge-1 DOWNSTREAM Reps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20803491	3R_20803491_SNP [dm3] 3R_24977769_SNP [dm6]	C	T	2.595e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10608121	3L_10608121_SNP [dm3] 3L_10615021_SNP [dm6]	T	A	2.596e^-4	0.939	INTERGENIC
X	16613474	X_16613474_SNP [dm3] X_16719441_SNP [dm6]	C	A	2.605e^-4	0.939	INTRON CG34325	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	9138875	2L_9138875_SNP [dm3] 2L_9138875_SNP [dm6]	T	C	2.609e^-4	0.939	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	5806798	X_5806798_SNP [dm3] X_5912765_SNP [dm6]	A	C	2.620e^-4	0.939	UTR_3_PRIME CG12236 DOWNSTREAM CG12236 & 1 other
3R	19621388	3R_19621388_SNP [dm3] 3R_23795666_SNP [dm6]	C	T	2.621e^-4	0.939	INTRON mbc
3R	23199413	3R_23199413_SNP [dm3] 3R_27373691_SNP [dm6]	A	G	2.628e^-4	0.939	INTERGENIC
3L	10298398	3L_10298398_DEL [dm3] 3L_10305298_DEL [dm6]	CGTCTTAAATTGA...	C	2.631e^-4	0.939	INTERGENIC
2R	6525667	2R_6525667_SNP [dm3] 2R_10638162_SNP [dm6]	T	C	2.632e^-4	0.939	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
3L	2492699	3L_2492699_SNP [dm3] 3L_2492699_SNP [dm6]	A	G	2.635e^-4	0.939	DOWNSTREAM CG1146 INTRON CG45186
2R	3130986	2R_3130986_SNP [dm3] 2R_7243481_SNP [dm6]	A	T	2.639e^-4	0.939	UTR_3_PRIME Ady43A	TF binding site mE1_TFBS_cad
3R	25009872	3R_25009872_SNP [dm3] 3R_29184150_SNP [dm6]	C	T	2.644e^-4	0.939	INTRON CG14509
3R	26578301	3R_26578301_SNP [dm3] 3R_30752579_SNP [dm6]	T	A	2.645e^-4	0.939	INTERGENIC
2R	3132123	2R_3132123_SNP [dm3] 2R_7244618_SNP [dm6]	G	C	2.651e^-4	0.939	INTRON Ady43A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16928300	3L_16928300_SNP [dm3] 3L_16935200_SNP [dm6]	A	G	2.658e^-4	0.939	SYNONYMOUS_CODING CG11905	TF binding site mE1_TFBS_Trl
3L	6338004	3L_6338004_SNP [dm3] 3L_6344904_SNP [dm6]	G	C	2.664e^-4	0.939	INTRON CG13300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	17998232	3L_17998232_SNP [dm3] 3L_18005132_SNP [dm6]	T	C	2.669e^-4	0.939	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	9082299	2L_9082299_SNP [dm3] 2L_9082299_SNP [dm6]	T	C	2.671e^-4	0.939	INTERGENIC
2R	12879949	2R_12879949_SNP [dm3] 2R_16992444_SNP [dm6]	A	T	2.672e^-4	0.939	INTRON Cbp53E
2L	7253675	2L_7253675_SNP [dm3] 2L_7253675_SNP [dm6]	T	A	2.678e^-4	0.939	UPSTREAM CG13786 INTERGENIC
2L	8236889	2L_8236889_SNP [dm3] 2L_8236889_SNP [dm6]	C	G	2.683e^-4	0.939	INTRON Pvr
3R	25036783	3R_25036783_SNP [dm3] 3R_29211061_SNP [dm6]	A	G	2.683e^-4	0.939	INTERGENIC
2L	9082298	2L_9082298_SNP [dm3] 2L_9082298_SNP [dm6]	T	A	2.685e^-4	0.939	INTERGENIC
3L	10653279	3L_10653279_SNP [dm3] 3L_10660179_SNP [dm6]	C	T	2.691e^-4	0.939	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2587645	3L_2587645_SNP [dm3] 3L_2587645_SNP [dm6]	T	C	2.692e^-4	0.939	UTR_5_PRIME RpL8 INTRON RpL8	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
3R	11231531	3R_11231531_SNP [dm3] 3R_15405809_SNP [dm6]	C	A	2.700e^-4	0.939	UPSTREAM CG6125 INTRON CG6125
X	5728537	X_5728537_SNP [dm3] X_5834504_SNP [dm6]	C	G	2.706e^-4	0.939	INTRON CG15765
3L	18089336	3L_18089336_SNP [dm3] 3L_18096236_SNP [dm6]	T	C	2.707e^-4	0.939	INTRON CG13698
X	14853432	X_14853432_SNP [dm3] X_14959399_SNP [dm6]	A	G	2.710e^-4	0.939	INTRON eag	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	1907200	2L_1907200_SNP [dm3] 2L_1907200_SNP [dm6]	C	T	2.715e^-4	0.939	INTRON CG7337
3R	24977490	3R_24977490_SNP [dm3] 3R_29151768_SNP [dm6]	C	G	2.718e^-4	0.939	UTR_5_PRIME ligatin DOWNSTREAM Slbp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	22756973	3R_22756973_SNP [dm3] 3R_26931251_SNP [dm6]	C	T	2.725e^-4	0.939	INTRON sda
3L	15613983	3L_15613983_SNP [dm3] 3L_15620883_SNP [dm6]	G	A	2.730e^-4	0.939	SYNONYMOUS_CODING CG7372 INTRON comm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	14121823	2L_14121823_SNP [dm3] 2L_14121823_SNP [dm6]	T	C	2.747e^-4	0.939	INTERGENIC
2R	18831759	2R_18831759_SNP [dm3] 2R_22944236_SNP [dm6]	A	G	2.754e^-4	0.939	NON_SYNONYMOUS_CODING CG42694
2R	12037427	2R_12037427_SNP [dm3] 2R_16149922_SNP [dm6]	C	A	2.758e^-4	0.939	UPSTREAM lbk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
3R	6504655	3R_6504655_SNP [dm3] 3R_10678933_SNP [dm6]	C	G	2.769e^-4	0.939	SYNONYMOUS_CODING CG14688	TF binding site mE1_TFBS_chinmo
3R	14514487	3R_14514487_SNP [dm3] 3R_18688765_SNP [dm6]	T	G	2.782e^-4	0.939	SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	3776287	3R_3776287_SNP [dm3] 3R_7950565_SNP [dm6]	T	A	2.788e^-4	0.939	INTRON dsx
2L	15111882	2L_15111882_SNP [dm3] 2L_15111882_SNP [dm6]	C	T	2.796e^-4	0.939	INTRON CG15269	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	17896824	2R_17896824_SNP [dm3] 2R_22009319_SNP [dm6]	A	G	2.798e^-4	0.939	INTRON CG34370
2L	9089916	2L_9089916_SNP [dm3] 2L_9089916_SNP [dm6]	T	C	2.800e^-4	0.939	DOWNSTREAM Toll-4 INTERGENIC
X	13352519	X_13352519_SNP [dm3] X_13458486_SNP [dm6]	T	A	2.800e^-4	0.939	UPSTREAM CG34324 INTRON Neto
2L	16622865	2L_16622865_DEL [dm3] 2L_16622865_DEL [dm6]	AAA	A	2.805e^-4	0.939	INTRON CG42389	TF binding site mE1_TFBS_chinmo
3R	21384231	3R_21384231_SNP [dm3] 3R_25558509_SNP [dm6]	C	G	2.811e^-4	0.939	INTRON msi
3R	15748797	3R_15748797_SNP [dm3] 3R_19923075_SNP [dm6]	T	G	2.812e^-4	0.939	SYNONYMOUS_CODING CG4462	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24228451	3R_24228451_SNP [dm3] 3R_28402729_SNP [dm6]	T	A	2.824e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3118990	3L_3118990_SNP [dm3] 3L_3118990_SNP [dm6]	T	G	2.833e^-4	0.939	INTRON prominin-like
3L	12262501	3L_12262501_SNP [dm3] 3L_12269401_SNP [dm6]	T	C	2.838e^-4	0.939	UTR_3_PRIME CG32100 DOWNSTREAM Pbgs
X	2291022	X_2291022_DEL [dm3] X_2396989_DEL [dm6]	TTCTGCT	T	2.842e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5472114	2L_5472114_SNP [dm3] 2L_5472114_SNP [dm6]	G	A	2.850e^-4	0.939	INTERGENIC
2R	18373304	2R_18373304_SNP [dm3] 2R_22485799_SNP [dm6]	T	A	2.854e^-4	0.939	SYNONYMOUS_CODING CG4554
3R	21905605	3R_21905605_SNP [dm3] 3R_26079883_SNP [dm6]	T	C	2.881e^-4	0.939	INTRON dys
3R	24447210	3R_24447210_SNP [dm3] 3R_28621488_SNP [dm6]	C	T	2.882e^-4	0.939	INTRON CG10011	TF binding site BDTNP1_TFBS_twi
3L	6735931	3L_6735931_SNP [dm3] 3L_6742831_SNP [dm6]	T	C	2.884e^-4	0.939	UPSTREAM dikar INTRON dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	6855086	2L_6855086_SNP [dm3] 2L_6855086_SNP [dm6]	C	T	2.886e^-4	0.939	SYNONYMOUS_CODING l_2_k09022	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	17767439	3R_17767439_SNP [dm3] 3R_21941717_SNP [dm6]	A	G	2.890e^-4	0.939	INTERGENIC
2L	14082586	2L_14082586_SNP [dm3] 2L_14082586_SNP [dm6]	T	G	2.894e^-4	0.939	INTRON nAChRalpha5	TF binding site mE1_TFBS_zfh1
3R	13803914	3R_13803914_SNP [dm3] 3R_17978192_SNP [dm6]	G	A	2.894e^-4	0.939	INTRON cpo
2L	3523508	2L_3523508_SNP [dm3] 2L_3523508_SNP [dm6]	G	C	2.895e^-4	0.939	NON_SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
3L	12028278	3L_12028278_DEL [dm3] 3L_12035178_DEL [dm6]	CTC	C	2.898e^-4	0.939	INTRON rols	TF binding site BDTNP1_TFBS_twi
X	11566101	X_11566101_SNP [dm3] X_11672068_SNP [dm6]	A	T	2.899e^-4	0.939	INTRON Ptp10D
2R	18992707	2R_18992707_SNP [dm3] 2R_23105184_SNP [dm6]	G	C	2.914e^-4	0.939	UPSTREAM Gr59d INTERGENIC
2L	7240823	2L_7240823_SNP [dm3] 2L_7240823_SNP [dm6]	T	C	2.922e^-4	0.939	UPSTREAM Ndae1 INTRON Ndae1
3L	18001468	3L_18001468_SNP [dm3] 3L_18008368_SNP [dm6]	T	G	2.924e^-4	0.939	INTRON Eip75B
3L	14285128	3L_14285128_SNP [dm3] 3L_14292028_SNP [dm6]	C	T	2.924e^-4	0.939	INTRON fz
3R	25654908	3R_25654908_SNP [dm3] 3R_29829186_SNP [dm6]	G	T	2.925e^-4	0.939	INTRON Atg16	enhancer mE1_CBP_Enhancers
2R	18272673	2R_18272673_SNP [dm3] 2R_22385168_SNP [dm6]	C	A	2.928e^-4	0.939	INTRON CG13506
3L	3769430	3L_3769430_SNP [dm3] 3L_3769430_SNP [dm6]	G	A	2.935e^-4	0.939	INTRON CG32264
2L	9510909	2L_9510909_SNP [dm3] 2L_9510909_SNP [dm6]	G	A	2.940e^-4	0.939	INTRON CG33298
3R	22986490	3R_22986490_INS [dm3] 3R_27160768_INS [dm6]	C	TT	2.943e^-4	0.939	UPSTREAM CG5909 DOWNSTREAM grass INTERGENIC
3L	14046414	3L_14046414_SNP [dm3] 3L_14053314_SNP [dm6]	A	C	2.944e^-4	0.939	UTR_5_PRIME CG43986 UPSTREAM CG32138 & 1 other DOWNSTREAM CG6833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	23207910	3R_23207910_DEL [dm3] 3R_27382188_DEL [dm6]	CACGGAT	C	2.946e^-4	0.939	UTR_3_PRIME side INTRON side	TF binding site mE1_TFBS_chinmo
3R	8889162	3R_8889162_SNP [dm3] 3R_13063440_SNP [dm6]	C	T	2.952e^-4	0.939	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3L	18248575	3L_18248575_SNP [dm3] 3L_18255475_SNP [dm6]	A	T	2.955e^-4	0.939	INTERGENIC
3L	14106328	3L_14106328_SNP [dm3] 3L_14113228_SNP [dm6]	A	C	2.963e^-4	0.939	SYNONYMOUS_CODING Sox21b
3R	17756707	3R_17756707_SNP [dm3] 3R_21930985_SNP [dm6]	A	G	2.977e^-4	0.939	INTERGENIC
X	16032361	X_16032361_SNP [dm3] X_16138328_SNP [dm6]	C	T	2.992e^-4	0.939	INTRON disco-r
3L	2761750	3L_2761750_SNP [dm3] 3L_2761750_SNP [dm6]	G	T	2.993e^-4	0.939	UPSTREAM Mrtf INTRON Mrtf	TF binding site mE1_TFBS_cad
3R	24979342	3R_24979342_SNP [dm3] 3R_29153620_SNP [dm6]	A	G	3.005e^-4	0.939	UTR_5_PRIME Rpn2 UPSTREAM Slbp INTRON Rpn2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	1924812	2L_1924812_SNP [dm3] 2L_1924812_SNP [dm6]	A	G	3.013e^-4	0.939	INTRON CG7337
3R	9039464	3R_9039464_SNP [dm3] 3R_13213742_SNP [dm6]	G	A	3.017e^-4	0.939	INTRON CG8483
2R	8920254	2R_8920254_SNP [dm3] 2R_13032749_SNP [dm6]	T	A	3.021e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	6582884	2R_6582884_SNP [dm3] 2R_10695379_SNP [dm6]	T	A	3.025e^-4	0.939	INTRON stan
2L	2914785	2L_2914785_SNP [dm3] 2L_2914785_SNP [dm6]	C	T	3.044e^-4	0.939	INTRON lilli
2R	3734926	2R_3734926_SNP [dm3] 2R_7847421_SNP [dm6]	C	T	3.045e^-4	0.939	UPSTREAM Dgk INTRON Dgk
3R	22765416	3R_22765416_SNP [dm3] 3R_26939694_SNP [dm6]	A	G	3.046e^-4	0.939	INTRON sda
3L	15776679	3L_15776679_SNP [dm3] 3L_15783579_SNP [dm6]	C	G	3.049e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	10282626	3L_10282626_SNP [dm3] 3L_10289526_SNP [dm6]	G	A	3.053e^-4	0.939	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17495001	2R_17495001_SNP [dm3] 2R_21607496_SNP [dm6]	T	C	3.060e^-4	0.939	UPSTREAM CR43243 & 1 other DOWNSTREAM CG15673 INTRON CG10433	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18945949	3R_18945949_SNP [dm3] 3R_23120227_SNP [dm6]	T	G	3.079e^-4	0.939	UPSTREAM CenB1A INTRON CenB1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	5811776	X_5811776_DEL [dm3] X_5917743_DEL [dm6]	CCGCTCTCCCC...	C	3.092e^-4	0.939	UPSTREAM CG3011 INTRON CG3726	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9329247	2L_9329247_SNP [dm3] 2L_9329247_SNP [dm6]	C	T	3.104e^-4	0.939	SYNONYMOUS_CODING CG17005 UTR_3_PRIME CG17005
2R	3143155	2R_3143155_SNP [dm3] 2R_7255650_SNP [dm6]	T	C	3.116e^-4	0.939	EXON CR45280
3R	23311839	3R_23311839_INS [dm3] 3R_27486117_INS [dm6]	T	TT	3.119e^-4	0.939	INTERGENIC
2L	6546965	2L_6546965_SNP [dm3] 2L_6546965_SNP [dm6]	T	C	3.132e^-4	0.939	UTR_5_PRIME eya	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	17177839	3R_17177839_SNP [dm3] 3R_21352117_SNP [dm6]	T	G	3.137e^-4	0.939	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
3R	25654913	3R_25654913_SNP [dm3] 3R_29829191_SNP [dm6]	C	A	3.138e^-4	0.939	INTRON Atg16	enhancer mE1_CBP_Enhancers
3L	3864834	3L_3864834_INS [dm3] 3L_3864834_INS [dm6]	A	AGTA	3.142e^-4	0.939	UPSTREAM CR45379 INTERGENIC
3L	3864836	3L_3864836_SNP [dm3] 3L_3864836_SNP [dm6]	C	G	3.142e^-4	0.939	UPSTREAM CR45379 INTERGENIC
2R	3712385	2R_3712385_SNP [dm3] 2R_7824880_SNP [dm6]	G	A	3.145e^-4	0.939	SYNONYMOUS_CODING CG30383 UPSTREAM phr	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	3712418	2R_3712418_SNP [dm3] 2R_7824913_SNP [dm6]	T	C	3.145e^-4	0.939	NON_SYNONYMOUS_CODING CG30383 UPSTREAM phr	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	3713564	2R_3713564_SNP [dm3] 2R_7826059_SNP [dm6]	A	T	3.145e^-4	0.939	NON_SYNONYMOUS_CODING phr UPSTREAM CG30383	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	24822439	3R_24822439_SNP [dm3] 3R_28996717_SNP [dm6]	C	T	3.147e^-4	0.939	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	24202211	3R_24202211_SNP [dm3] 3R_28376489_SNP [dm6]	T	C	3.149e^-4	0.939	INTERGENIC
2R	19482830	2R_19482830_SNP [dm3] 2R_23595307_SNP [dm6]	C	G	3.151e^-4	0.939	INTRON apt
3R	21383724	3R_21383724_SNP [dm3] 3R_25558002_SNP [dm6]	A	G	3.156e^-4	0.939	INTRON msi
2L	11052294	2L_11052294_SNP [dm3] 2L_11052294_SNP [dm6]	A	G	3.159e^-4	0.939	INTRON Samuel
X	17663124	X_17663124_SNP [dm3] X_17769091_SNP [dm6]	A	G	3.159e^-4	0.939	NON_SYNONYMOUS_CODING unc-4	TF binding site BDTNP1_TFBS_twi
2R	18992678	2R_18992678_SNP [dm3] 2R_23105155_SNP [dm6]	G	C	3.160e^-4	0.939	SYNONYMOUS_CODING Gr59d
2R	5645874	2R_5645874_SNP [dm3] 2R_9758369_SNP [dm6]	G	C	3.164e^-4	0.939	UPSTREAM CG1690 INTRON trpl
3R	14179626	3R_14179626_SNP [dm3] 3R_18353904_SNP [dm6]	G	C	3.177e^-4	0.939	NON_SYNONYMOUS_CODING CG15803	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17002682	X_17002682_SNP [dm3] X_17108649_SNP [dm6]	C	T	3.179e^-4	0.939	INTRON CG5004	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20410128	3R_20410128_SNP [dm3] 3R_24584406_SNP [dm6]	C	T	3.185e^-4	0.939	SYNONYMOUS_CODING CG13625	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_sens
3R	9322283	3R_9322283_SNP [dm3] 3R_13496561_SNP [dm6]	A	C	3.185e^-4	0.939	INTERGENIC
3R	15143988	3R_15143988_SNP [dm3] 3R_19318266_SNP [dm6]	C	T	3.213e^-4	0.939	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	10282513	3L_10282513_SNP [dm3] 3L_10289413_SNP [dm6]	G	A	3.218e^-4	0.939	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2552127	3L_2552127_SNP [dm3] 3L_2552127_SNP [dm6]	A	C	3.219e^-4	0.939	INTRON Spn
3R	23258398	3R_23258398_SNP [dm3] 3R_27432676_SNP [dm6]	A	C	3.220e^-4	0.939	INTRON side
2R	9691744	2R_9691744_SNP [dm3] 2R_13804239_SNP [dm6]	C	T	3.226e^-4	0.939	INTRON Cpr50Cb	TF binding site mE1_TFBS_cad
2R	9692066	2R_9692066_SNP [dm3] 2R_13804561_SNP [dm6]	A	C	3.226e^-4	0.939	INTRON Cpr50Cb
2R	9694448	2R_9694448_DEL [dm3] 2R_13806943_DEL [dm6]	CCCC	C	3.226e^-4	0.939	INTRON stj
3R	8965439	3R_8965439_SNP [dm3] 3R_13139717_SNP [dm6]	A	C	3.240e^-4	0.939	INTRON timeout & 2 others
3R	24413391	3R_24413391_SNP [dm3] 3R_28587669_SNP [dm6]	G	A	3.241e^-4	0.939	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	5872917	2L_5872917_SNP [dm3] 2L_5872917_SNP [dm6]	A	G	3.241e^-4	0.939	INTRON rau	TF binding site mE1_TFBS_sens
2R	18228457	2R_18228457_SNP [dm3] 2R_22340952_SNP [dm6]	C	T	3.243e^-4	0.939	SYNONYMOUS_CODING Liprin-gamma	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8811427	3L_8811427_SNP [dm3] 3L_8818327_SNP [dm6]	C	G	3.252e^-4	0.939	INTERGENIC
3R	24547320	3R_24547320_SNP [dm3] 3R_28721598_SNP [dm6]	C	T	3.257e^-4	0.939	SYNONYMOUS_CODING htt	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	16599069	2L_16599069_DEL [dm3] 2L_16599069_DEL [dm6]	GG	G	3.259e^-4	0.939	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
3L	3047055	3L_3047055_SNP [dm3] 3L_3047055_SNP [dm6]	A	C	3.265e^-4	0.939	UPSTREAM Sk2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	19417991	3L_19417991_DEL [dm3] 3L_19424891_DEL [dm6]	TCTCCATTGGTTT...	T	3.267e^-4	0.939	UPSTREAM CR32205 DOWNSTREAM CG33255 EXON CR42838
2L	12228185	2L_12228185_INS [dm3] 2L_12228185_INS [dm6]	T	TGTTGGACAAACT...	3.276e^-4	0.939	INTRON aret
3L	10995412	3L_10995412_SNP [dm3] 3L_11002312_SNP [dm6]	C	T	3.284e^-4	0.939	UPSTREAM snoRNA:Me18S-G962 INTRON klu	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12653628	2R_12653628_SNP [dm3] 2R_16766123_SNP [dm6]	C	A	3.286e^-4	0.939	UPSTREAM CG5348 & 2 others INTRON unc-104
3L	16929443	3L_16929443_SNP [dm3] 3L_16936343_SNP [dm6]	A	G	3.298e^-4	0.939	UPSTREAM CG11905 INTERGENIC	TF binding site mE1_TFBS_Trl
X	16344746	X_16344746_SNP [dm3] X_16450713_SNP [dm6]	A	T	3.303e^-4	0.939	INTRON Rbp2
3L	2565896	3L_2565896_SNP [dm3] 3L_2565896_SNP [dm6]	A	T	3.306e^-4	0.939	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4511070	X_4511070_INS [dm3] X_4617037_INS [dm6]	C	CT	3.307e^-4	0.939	UPSTREAM peb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	16502391	2L_16502391_INS [dm3] 2L_16502391_INS [dm6]	A	TATTTG	3.308e^-4	0.939	INTRON Tpr2
3R	21297278	3R_21297278_SNP [dm3] 3R_25471556_SNP [dm6]	A	C	3.311e^-4	0.939	INTRON Fur1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8564413	3R_8564413_SNP [dm3] 3R_12738691_SNP [dm6]	A	G	3.313e^-4	0.939	UPSTREAM CG5724 INTERGENIC
2L	7268786	2L_7268786_SNP [dm3] 2L_7268786_SNP [dm6]	A	G	3.313e^-4	0.939	INTRON Wnt4
2L	3870261	2L_3870261_SNP [dm3] 2L_3870261_SNP [dm6]	T	A	3.314e^-4	0.939	SYNONYMOUS_CODING Cep97	TF binding site mE1_TFBS_sens
3L	10298381	3L_10298381_SNP [dm3] 3L_10305281_SNP [dm6]	T	A	3.319e^-4	0.939	INTERGENIC
X	12329440	X_12329440_SNP [dm3] X_12435407_SNP [dm6]	A	C	3.322e^-4	0.939	INTRON Pkcdelta
2L	9091618	2L_9091618_SNP [dm3] 2L_9091618_SNP [dm6]	T	C	3.324e^-4	0.939	INTERGENIC
3R	26088435	3R_26088435_SNP [dm3] 3R_30262713_SNP [dm6]	T	A	3.325e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_Kr
X	18870507	X_18870507_SNP [dm3] X_18976474_SNP [dm6]	C	G	3.326e^-4	0.939	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	9092011	2L_9092011_SNP [dm3] 2L_9092011_SNP [dm6]	C	T	3.327e^-4	0.939	INTERGENIC
2L	18772165	2L_18772165_SNP [dm3] 2L_18772165_SNP [dm6]	G	T	3.331e^-4	0.939	UPSTREAM ham INTRON ham
3R	17225096	3R_17225096_SNP [dm3] 3R_21399374_SNP [dm6]	T	C	3.333e^-4	0.939	SPLICE_SITE_REGION CG6475 INTRON CG6475	TF binding site mE1_TFBS_sens
2R	12869701	2R_12869701_SNP [dm3] 2R_16982196_SNP [dm6]	C	T	3.335e^-4	0.939	INTRON Cbp53E
X	13352512	X_13352512_SNP [dm3] X_13458479_SNP [dm6]	C	A	3.338e^-4	0.939	UPSTREAM CG34324 INTRON Neto
3R	23207959	3R_23207959_SNP [dm3] 3R_27382237_SNP [dm6]	A	T	3.339e^-4	0.939	UTR_3_PRIME side INTRON side	TF binding site mE1_TFBS_chinmo
2L	13881394	2L_13881394_SNP [dm3] 2L_13881394_SNP [dm6]	C	T	3.340e^-4	0.939	INTRON CenG1A
3R	24547411	3R_24547411_SNP [dm3] 3R_28721689_SNP [dm6]	G	C	3.341e^-4	0.939	NON_SYNONYMOUS_CODING htt	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	5151996	2L_5151996_SNP [dm3] 2L_5151996_SNP [dm6]	A	T	3.343e^-4	0.939	INTRON Msp300	TF binding site mE1_TFBS_inv
2L	16502366	2L_16502366_SNP [dm3] 2L_16502366_SNP [dm6]	C	T	3.345e^-4	0.939	INTRON Tpr2
3R	14505680	3R_14505680_SNP [dm3] 3R_18679958_SNP [dm6]	C	T	3.346e^-4	0.939	SYNONYMOUS_CODING CG7706 UPSTREAM CG7708
3L	11356844	3L_11356844_SNP [dm3] 3L_11363744_SNP [dm6]	C	A	3.360e^-4	0.939	NON_SYNONYMOUS_CODING CG6163 UPSTREAM CR45036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8162405	X_8162405_SNP [dm3] X_8268372_SNP [dm6]	T	G	3.363e^-4	0.939	SYNONYMOUS_CODING CG1632	TF binding site mE1_TFBS_chinmo
3L	11105361	3L_11105361_SNP [dm3] 3L_11112261_SNP [dm6]	G	T	3.365e^-4	0.939	DOWNSTREAM Sod & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	14443282	3L_14443282_SNP [dm3] 3L_14450182_SNP [dm6]	A	T	3.377e^-4	0.939	INTRON bbg
2L	7290258	2L_7290258_SNP [dm3] 2L_7290258_SNP [dm6]	G	T	3.382e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16059087	3R_16059087_SNP [dm3] 3R_20233365_SNP [dm6]	G	T	3.384e^-4	0.939	INTRON Nlg4
2R	12980262	2R_12980262_SNP [dm3] 2R_17092757_SNP [dm6]	G	T	3.391e^-4	0.939	NON_SYNONYMOUS_CODING CG6984 UPSTREAM Sply DOWNSTREAM GstS1
2R	17205568	2R_17205568_DEL [dm3] 2R_21318063_DEL [dm6]	ATTCAACCATTT...	A	3.416e^-4	0.939	UTR_3_PRIME CG33655 INTRON CG9485
2R	13372213	2R_13372213_SNP [dm3] 2R_17484708_SNP [dm6]	A	C	3.417e^-4	0.939	UTR_5_PRIME CG43110 UPSTREAM NT5E-2 & 1 other
3R	10316446	3R_10316446_SNP [dm3] 3R_14490724_SNP [dm6]	A	T	3.422e^-4	0.939	INTERGENIC
2R	3933191	2R_3933191_INS [dm3] 2R_8045686_INS [dm6]	G	GT	3.423e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	3381297	2R_3381297_SNP [dm3] 2R_7493792_SNP [dm6]	A	G	3.429e^-4	0.939	DOWNSTREAM CG1620 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	6844320	2L_6844320_SNP [dm3] 2L_6844320_SNP [dm6]	T	C	3.430e^-4	0.939	INTERGENIC
2R	9368236	2R_9368236_SNP [dm3] 2R_13480731_SNP [dm6]	C	T	3.432e^-4	0.939	INTRON arr
3L	9408827	3L_9408827_SNP [dm3] 3L_9415727_SNP [dm6]	C	T	3.435e^-4	0.939	DOWNSTREAM CG3982 INTRON CG3967
2R	3711553	2R_3711553_SNP [dm3] 2R_7824048_SNP [dm6]	C	A	3.443e^-4	0.939	UTR_3_PRIME CG30383 UPSTREAM cathD	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
X	1942460	X_1942460_SNP [dm3] X_2048427_SNP [dm6]	T	C	3.449e^-4	0.939	UPSTREAM moody INTRON CG4313 & 1 other
X	4233615	X_4233615_SNP [dm3] X_4339582_SNP [dm6]	C	T	3.451e^-4	0.939	INTRON norpA
2L	15410470	2L_15410470_SNP [dm3] 2L_15410470_SNP [dm6]	C	A	3.466e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11694273	2R_11694273_DEL [dm3] 2R_15806768_DEL [dm6]	GG	G	3.470e^-4	0.939	INTRON tun & 1 other
2R	7399907	2R_7399907_SNP [dm3] 2R_11512402_SNP [dm6]	T	C	3.478e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10298357	3L_10298357_SNP [dm3] 3L_10305257_SNP [dm6]	C	A	3.486e^-4	0.939	INTERGENIC
2L	7266308	2L_7266308_SNP [dm3] 2L_7266308_SNP [dm6]	A	G	3.489e^-4	0.939	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi
X	9020264	X_9020264_SNP [dm3] X_9126231_SNP [dm6]	T	G	3.494e^-4	0.939	SYNONYMOUS_CODING fend	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	19517458	2L_19517458_SNP [dm3] 2L_19517458_SNP [dm6]	A	G	3.502e^-4	0.939	UPSTREAM CG10186 DOWNSTREAM CR43363 INTERGENIC
3R	1032513	3R_1032513_SNP [dm3] 3R_5206791_SNP [dm6]	G	A	3.506e^-4	0.939	INTRON cno
2L	1932899	2L_1932899_DEL [dm3] 2L_1932899_DEL [dm6]	AA	A	3.506e^-4	0.939	INTRON CG7337
3L	12260675	3L_12260675_SNP [dm3] 3L_12267575_SNP [dm6]	T	C	3.512e^-4	0.939	UTR_5_PRIME CG32100 UPSTREAM app	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	19518122	2L_19518122_SNP [dm3] 2L_19518122_SNP [dm6]	A	G	3.518e^-4	0.939	UPSTREAM CG10186 & 1 other EXON CR43363
3R	9710321	3R_9710321_SNP [dm3] 3R_13884599_SNP [dm6]	G	A	3.518e^-4	0.939	INTERGENIC
3L	12307957	3L_12307957_SNP [dm3] 3L_12314857_SNP [dm6]	C	T	3.520e^-4	0.939	INTERGENIC	regulatory region REDfly_CRMs
2R	17113882	2R_17113882_SNP [dm3] 2R_21226377_SNP [dm6]	C	A	3.530e^-4	0.939	INTRON ASPP
2R	17904985	2R_17904985_SNP [dm3] 2R_22017480_SNP [dm6]	T	C	3.532e^-4	0.939	INTRON CG34370
3R	26158735	3R_26158735_SNP [dm3] 3R_30333013_SNP [dm6]	A	T	3.533e^-4	0.939	INTRON hdc
3R	13124245	3R_13124245_SNP [dm3] 3R_17298523_SNP [dm6]	C	A	3.536e^-4	0.939	INTERGENIC
3R	23207920	3R_23207920_INS [dm3] 3R_27382198_INS [dm6]	T	TCCGTGCT	3.542e^-4	0.939	UTR_3_PRIME side INTRON side	TF binding site mE1_TFBS_chinmo
3L	6541558	3L_6541558_SNP [dm3] 3L_6548458_SNP [dm6]	C	G	3.549e^-4	0.939	INTRON sfl
2R	18839512	2R_18839512_SNP [dm3] 2R_22951989_SNP [dm6]	G	A	3.558e^-4	0.939	SPLICE_SITE_REGION CR32835 EXON CR32835
3L	10653278	3L_10653278_SNP [dm3] 3L_10660178_SNP [dm6]	C	T	3.560e^-4	0.939	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15146307	2L_15146307_SNP [dm3] 2L_15146307_SNP [dm6]	C	A	3.564e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14285115	3L_14285115_SNP [dm3] 3L_14292015_SNP [dm6]	T	A	3.566e^-4	0.939	INTRON fz
3L	14285080	3L_14285080_SNP [dm3] 3L_14291980_SNP [dm6]	G	T	3.569e^-4	0.939	INTRON fz
3R	14187095	3R_14187095_SNP [dm3] 3R_18361373_SNP [dm6]	A	G	3.579e^-4	0.939	UPSTREAM CG15803 & 1 other DOWNSTREAM CR45634 INTERGENIC
3L	10609144	3L_10609144_SNP [dm3] 3L_10616044_SNP [dm6]	T	A	3.588e^-4	0.939	INTERGENIC
3R	19193203	3R_19193203_SNP [dm3] 3R_23367481_SNP [dm6]	C	A	3.592e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14285024	3L_14285024_SNP [dm3] 3L_14291924_SNP [dm6]	G	A	3.595e^-4	0.939	INTRON fz
3L	3731091	3L_3731091_DEL [dm3] 3L_3731091_DEL [dm6]	TCT	T	3.607e^-4	0.939	INTRON CG32264
3L	10607780	3L_10607780_SNP [dm3] 3L_10614680_SNP [dm6]	A	T	3.610e^-4	0.939	INTERGENIC
3R	18858182	3R_18858182_SNP [dm3] 3R_23032460_SNP [dm6]	G	A	3.612e^-4	0.939	DOWNSTREAM CG13833 INTERGENIC
2L	14082576	2L_14082576_SNP [dm3] 2L_14082576_SNP [dm6]	T	G	3.613e^-4	0.939	INTRON nAChRalpha5	TF binding site mE1_TFBS_zfh1
2R	6055475	2R_6055475_SNP [dm3] 2R_10167970_SNP [dm6]	A	G	3.613e^-4	0.939	INTRON KCNQ
2R	17900319	2R_17900319_SNP [dm3] 2R_22012814_SNP [dm6]	T	A	3.613e^-4	0.939	INTRON CG34370
3L	10281041	3L_10281041_SNP [dm3] 3L_10287941_SNP [dm6]	A	G	3.616e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23199096	3R_23199096_SNP [dm3] 3R_27373374_SNP [dm6]	T	A	3.617e^-4	0.939	DOWNSTREAM CG42534 INTERGENIC
3R	26807310	3R_26807310_SNP [dm3] 3R_30981588_SNP [dm6]	G	A	3.619e^-4	0.939	INTRON 5-HT7
X	15074434	X_15074434_SNP [dm3] X_15180401_SNP [dm6]	A	G	3.619e^-4	0.939	NON_SYNONYMOUS_CODING CG43737	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	10281163	3L_10281163_SNP [dm3] 3L_10288063_SNP [dm6]	T	C	3.625e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12355358	2R_12355358_SNP [dm3] 2R_16467853_SNP [dm6]	T	C	3.639e^-4	0.939	UPSTREAM CheB53b DOWNSTREAM CheB53a INTERGENIC
2R	17442684	2R_17442684_SNP [dm3] 2R_21555179_SNP [dm6]	T	C	3.640e^-4	0.939	INTRON Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19517338	2L_19517338_INS [dm3] 2L_19517338_INS [dm6]	T	TA	3.658e^-4	0.939	UPSTREAM CG10186 DOWNSTREAM CR43363 INTERGENIC
2R	3417565	2R_3417565_SNP [dm3] 2R_7530060_SNP [dm6]	T	C	3.665e^-4	0.939	UPSTREAM Drat INTRON Drat	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9091753	2L_9091753_SNP [dm3] 2L_9091753_SNP [dm6]	C	T	3.667e^-4	0.939	INTERGENIC
3L	10281119	3L_10281119_INS [dm3] 3L_10288019_INS [dm6]	A	AT	3.672e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10281122	3L_10281122_DEL [dm3] 3L_10288022_DEL [dm6]	AGT	A	3.672e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9798657	3L_9798657_SNP [dm3] 3L_9805557_SNP [dm6]	A	T	3.687e^-4	0.939	INTRON CG32052	TF binding site BDTNP1_TFBS_twi
2L	9091556	2L_9091556_SNP [dm3] 2L_9091556_SNP [dm6]	G	T	3.698e^-4	0.939	INTERGENIC
2R	17444084	2R_17444084_SNP [dm3] 2R_21556579_SNP [dm6]	A	C	3.701e^-4	0.939	INTRON Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14487894	X_14487894_SNP [dm3] X_14593861_SNP [dm6]	T	G	3.702e^-4	0.939	INTRON CG9413
3R	22262430	3R_22262430_SNP [dm3] 3R_26436708_SNP [dm6]	A	G	3.708e^-4	0.939	INTERGENIC
2R	17408745	2R_17408745_SNP [dm3] 2R_21521240_SNP [dm6]	T	C	3.716e^-4	0.939	NON_SYNONYMOUS_CODING CG30289 UPSTREAM CG30288
3R	23183105	3R_23183105_DEL [dm3] 3R_27357383_DEL [dm6]	TT	T	3.718e^-4	0.939	INTRON CG42534	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16608999	2L_16608999_SNP [dm3] 2L_16608999_SNP [dm6]	T	A	3.744e^-4	0.939	NON_SYNONYMOUS_CODING CG4631 INTRON CG42389
2L	15134102	2L_15134102_SNP [dm3] 2L_15134102_SNP [dm6]	A	G	3.752e^-4	0.939	INTERGENIC
3R	15748423	3R_15748423_SNP [dm3] 3R_19922701_SNP [dm6]	G	C	3.761e^-4	0.939	NON_SYNONYMOUS_CODING CG4462	TF binding site mE1_TFBS_cad
3R	5892981	3R_5892981_SNP [dm3] 3R_10067259_SNP [dm6]	A	T	3.770e^-4	0.939	NON_SYNONYMOUS_CODING CG33783 UPSTREAM CG33784
3R	5892982	3R_5892982_SNP [dm3] 3R_10067260_SNP [dm6]	C	G	3.770e^-4	0.939	NON_SYNONYMOUS_CODING CG33783 UPSTREAM CG33784
2R	11670864	2R_11670864_SNP [dm3] 2R_15783359_SNP [dm6]	G	A	3.774e^-4	0.939	SYNONYMOUS_CODING Zasp52
3L	3046961	3L_3046961_SNP [dm3] 3L_3046961_SNP [dm6]	G	A	3.784e^-4	0.939	UPSTREAM Sk2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	9983467	3L_9983467_SNP [dm3] 3L_9990367_SNP [dm6]	T	A	3.785e^-4	0.939	INTRON dpr6
3L	10495855	3L_10495855_SNP [dm3] 3L_10502755_SNP [dm6]	C	T	3.791e^-4	0.939	INTRON A2bp1
2R	4853327	2R_4853327_SNP [dm3] 2R_8965822_SNP [dm6]	T	G	3.800e^-4	0.939	INTRON CG8216
3R	8648859	3R_8648859_INS [dm3] 3R_12823137_INS [dm6]	T	AACTGC	3.801e^-4	0.939	INTERGENIC
3L	8673782	3L_8673782_SNP [dm3] 3L_8680682_SNP [dm6]	A	G	3.803e^-4	0.939	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25856790	3R_25856790_SNP [dm3] 3R_30031068_SNP [dm6]	T	G	3.807e^-4	0.939	INTRON Axn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6141545	2R_6141545_SNP [dm3] 2R_10254040_SNP [dm6]	C	T	3.825e^-4	0.939	INTRON CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	12400300	X_12400300_SNP [dm3] X_12506267_SNP [dm6]	A	G	3.830e^-4	0.939	INTRON CG2556
2R	7147966	2R_7147966_SNP [dm3] 2R_11260461_SNP [dm6]	C	T	3.832e^-4	0.939	UPSTREAM Cpr47Ec DOWNSTREAM Cpr47Ed INTERGENIC
2R	3723940	2R_3723940_SNP [dm3] 2R_7836435_SNP [dm6]	T	C	3.833e^-4	0.939	UTR_3_PRIME Dgk DOWNSTREAM Dgk & 1 other
3L	14285042	3L_14285042_SNP [dm3] 3L_14291942_SNP [dm6]	G	A	3.837e^-4	0.939	INTRON fz
2L	9082441	2L_9082441_SNP [dm3] 2L_9082441_SNP [dm6]	C	T	3.840e^-4	0.939	INTERGENIC
2L	10055059	2L_10055059_SNP [dm3] 2L_10055059_SNP [dm6]	T	G	3.847e^-4	0.939	SYNONYMOUS_CODING Cpr31A DOWNSTREAM CR44875	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15748267	3R_15748267_INS [dm3] 3R_19922545_INS [dm6]	A	AAATAATTTCTA...	3.855e^-4	0.939	UPSTREAM CR43282 INTRON CG4462
2L	2574973	2L_2574973_SNP [dm3] 2L_2574973_SNP [dm6]	G	C	3.855e^-4	0.939	SYNONYMOUS_CODING CG34314 UTR_5_PRIME Rad1 DOWNSTREAM insv	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17897355	2R_17897355_SNP [dm3] 2R_22009850_SNP [dm6]	G	T	3.856e^-4	0.939	INTRON CG34370
X	14991132	X_14991132_SNP [dm3] X_15097099_SNP [dm6]	T	G	3.863e^-4	0.939	INTRON Rab3-GEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5016192	X_5016192_SNP [dm3] X_5122159_SNP [dm6]	A	G	3.876e^-4	0.939	INTRON rg & 1 other
2L	19551604	2L_19551604_SNP [dm3] 2L_19551604_SNP [dm6]	A	C	3.885e^-4	0.939	INTRON Tep4
X	11746017	X_11746017_SNP [dm3] X_11851984_SNP [dm6]	A	G	3.894e^-4	0.939	SYNONYMOUS_CODING p24-1 DOWNSTREAM CG10347	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	12026588	3L_12026588_SNP [dm3] 3L_12033488_SNP [dm6]	A	G	3.897e^-4	0.939	DOWNSTREAM CG43993 INTRON rols
X	10862089	X_10862089_SNP [dm3] X_10968056_SNP [dm6]	C	T	3.902e^-4	0.939	UTR_3_PRIME CG42339 UPSTREAM C901	TF binding site mE1_TFBS_inv
3L	5743565	3L_5743565_SNP [dm3] 3L_5750465_SNP [dm6]	G	T	3.908e^-4	0.939	UTR_3_PRIME DnaJ-1 DOWNSTREAM sif
2L	1946700	2L_1946700_SNP [dm3] 2L_1946700_SNP [dm6]	A	T	3.909e^-4	0.939	UTR_5_PRIME CG33673 UPSTREAM CG15357	regulatory region REDfly_CRMs
3R	17177846	3R_17177846_SNP [dm3] 3R_21352124_SNP [dm6]	G	T	3.911e^-4	0.939	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
X	14487872	X_14487872_SNP [dm3] X_14593839_SNP [dm6]	A	G	3.913e^-4	0.939	INTRON CG9413
3R	17763210	3R_17763210_INS [dm3] 3R_21937488_INS [dm6]	T	TC	3.913e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5152187	2L_5152187_SNP [dm3] 2L_5152187_SNP [dm6]	C	G	3.918e^-4	0.939	START_GAINED Msp300 UTR_5_PRIME Msp300 INTRON Msp300
3L	7087114	3L_7087114_SNP [dm3] 3L_7094014_SNP [dm6]	C	T	3.921e^-4	0.939	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	24094865	3R_24094865_SNP [dm3] 3R_28269143_SNP [dm6]	G	T	3.926e^-4	0.939	INTERGENIC
X	19429091	X_19429091_SNP [dm3] X_19535058_SNP [dm6]	G	A	3.929e^-4	0.939	INTRON CG32532
2L	9089047	2L_9089047_SNP [dm3] 2L_9089047_SNP [dm6]	A	G	3.932e^-4	0.939	SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9964529	3R_9964529_DEL [dm3] 3R_14138807_DEL [dm6]	CATT	C	3.936e^-4	0.939	INTERGENIC
2L	2609835	2L_2609835_SNP [dm3] 2L_2609835_SNP [dm6]	C	A	3.936e^-4	0.939	UPSTREAM CG15395 INTERGENIC
X	5497625	X_5497625_DEL [dm3] X_5603592_DEL [dm6]	TT	T	3.941e^-4	0.939	INTRON Vsx1
3L	9424141	3L_9424141_SNP [dm3] 3L_9431041_SNP [dm6]	A	G	3.947e^-4	0.939	NON_SYNONYMOUS_CODING MTF-1 START_GAINED MTF-1 UTR_5_PRIME MTF-1 INTRON MTF-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	351787	3L_351787_SNP [dm3] 3L_351787_SNP [dm6]	C	G	3.957e^-4	0.939	INTRON Ptpmeg
3L	10758020	3L_10758020_SNP [dm3] 3L_10764920_SNP [dm6]	G	A	3.962e^-4	0.939	INTERGENIC
2L	14416562	2L_14416562_SNP [dm3] 2L_14416562_SNP [dm6]	G	A	3.988e^-4	0.939	DOWNSTREAM Pburs INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24411914	3R_24411914_SNP [dm3] 3R_28586192_SNP [dm6]	C	G	4.000e^-4	0.939	UPSTREAM fkh EXON MRE23	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	24413721	3R_24413721_SNP [dm3] 3R_28587999_SNP [dm6]	T	A	4.000e^-4	0.939	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	4511936	X_4511936_SNP [dm3] X_4617903_SNP [dm6]	A	T	4.002e^-4	0.939	UTR_5_PRIME peb	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	19054585	2R_19054585_SNP [dm3] 2R_23167062_SNP [dm6]	T	A	4.007e^-4	0.939	INTRON CG34371	TF binding site mE1_TFBS_HSA
3L	15072522	3L_15072522_SNP [dm3] 3L_15079422_SNP [dm6]	G	T	4.013e^-4	0.939	UTR_5_PRIME cp309 UPSTREAM Or71a INTRON cp309	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
X	20031554	X_20031554_SNP [dm3] X_20137521_SNP [dm6]	A	C	4.023e^-4	0.939	NON_SYNONYMOUS_CODING CG15322	TF binding site mE1_TFBS_chinmo
2R	7399854	2R_7399854_SNP [dm3] 2R_11512349_SNP [dm6]	C	T	4.028e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	346381	3L_346381_SNP [dm3] 3L_346381_SNP [dm6]	C	T	4.028e^-4	0.939	INTRON Ptpmeg & 1 other	TF binding site BDTNP1_TFBS_dl
2L	7378870	2L_7378870_SNP [dm3] 2L_7378870_SNP [dm6]	T	C	4.031e^-4	0.939	SYNONYMOUS_CODING ninaC
3R	15062462	3R_15062462_SNP [dm3] 3R_19236740_SNP [dm6]	C	A	4.035e^-4	0.939	INTRON unc79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23207707	3R_23207707_SNP [dm3] 3R_27381985_SNP [dm6]	C	T	4.035e^-4	0.939	UTR_3_PRIME side INTRON side	TF binding site mE1_TFBS_chinmo
3L	14285031	3L_14285031_SNP [dm3] 3L_14291931_SNP [dm6]	A	G	4.041e^-4	0.939	INTRON fz
3L	4003297	3L_4003297_INS [dm3] 3L_4003297_INS [dm6]	T	TAT	4.041e^-4	0.939	UPSTREAM CG14985 INTERGENIC
3R	3407262	3R_3407262_SNP [dm3] 3R_7581540_SNP [dm6]	T	C	4.042e^-4	0.939	INTRON CG34127
2R	16423281	2R_16423281_DEL [dm3] 2R_20535776_DEL [dm6]	TC	T	4.048e^-4	0.939	UTR_3_PRIME CG18067 UPSTREAM CG13423 DOWNSTREAM CG18067
3L	14081579	3L_14081579_SNP [dm3] 3L_14088479_SNP [dm6]	T	C	4.051e^-4	0.939	INTERGENIC
2L	10151574	2L_10151574_SNP [dm3] 2L_10151574_SNP [dm6]	G	A	4.061e^-4	0.939	SYNONYMOUS_CODING CG4839 INTRON CG44153
3L	1868869	3L_1868869_INS [dm3] 3L_1868869_INS [dm6]	T	TT	4.062e^-4	0.939	UTR_3_PRIME CG12025 DOWNSTREAM CG12025
2L	6544331	2L_6544331_SNP [dm3] 2L_6544331_SNP [dm6]	T	C	4.062e^-4	0.939	INTRON eya	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24701872	3R_24701872_SNP [dm3] 3R_28876150_SNP [dm6]	C	A	4.063e^-4	0.939	NON_SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10758475	3L_10758475_SNP [dm3] 3L_10765375_SNP [dm6]	G	A	4.068e^-4	0.939	INTERGENIC
2L	1888116	2L_1888116_SNP [dm3] 2L_1888116_SNP [dm6]	G	T	4.069e^-4	0.939	INTRON CG7337	TF binding site BDTNP1_TFBS_da
2L	13342178	2L_13342178_SNP [dm3] 2L_13342178_SNP [dm6]	A	C	4.069e^-4	0.939	INTERGENIC
2L	15320474	2L_15320474_SNP [dm3] 2L_15320474_SNP [dm6]	A	G	4.075e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17844996	X_17844996_SNP [dm3] X_17950963_SNP [dm6]	C	T	4.077e^-4	0.939	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1932633	2L_1932633_SNP [dm3] 2L_1932633_SNP [dm6]	T	C	4.080e^-4	0.939	INTRON CG7337
3L	3802410	3L_3802410_SNP [dm3] 3L_3802410_SNP [dm6]	G	T	4.083e^-4	0.939	INTRON CG32264
2L	5340975	2L_5340975_SNP [dm3] 2L_5340975_SNP [dm6]	A	G	4.096e^-4	0.939	SYNONYMOUS_CODING CG12512
2L	9089338	2L_9089338_SNP [dm3] 2L_9089338_SNP [dm6]	C	T	4.101e^-4	0.939	SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17998289	3L_17998289_SNP [dm3] 3L_18005189_SNP [dm6]	G	C	4.103e^-4	0.939	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	6272903	2L_6272903_DEL [dm3] 2L_6272903_DEL [dm6]	GAGTCAAGGGGGCGAG...	G	4.104e^-4	0.939	CODON_DELETION Ddr
2L	15157477	2L_15157477_SNP [dm3] 2L_15157477_SNP [dm6]	T	C	4.108e^-4	0.939	INTERGENIC
3R	24206255	3R_24206255_SNP [dm3] 3R_28380533_SNP [dm6]	C	A	4.113e^-4	0.939	INTERGENIC
2L	16599170	2L_16599170_SNP [dm3] 2L_16599170_SNP [dm6]	T	A	4.115e^-4	0.939	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
2L	16599198	2L_16599198_SNP [dm3] 2L_16599198_SNP [dm6]	C	G	4.115e^-4	0.939	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
2L	3871882	2L_3871882_SNP [dm3] 2L_3871882_SNP [dm6]	G	C	4.116e^-4	0.939	DOWNSTREAM Cep97 & 1 other INTRON CG31957	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	3057097	2R_3057097_SNP [dm3] 2R_7169592_SNP [dm6]	T	C	4.122e^-4	0.939	INTRON pk
3L	10281614	3L_10281614_SNP [dm3] 3L_10288514_SNP [dm6]	A	T	4.125e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1215358	3L_1215358_SNP [dm3] 3L_1215358_SNP [dm6]	G	A	4.126e^-4	0.939	INTRON mwh
3L	10729093	3L_10729093_SNP [dm3] 3L_10735993_SNP [dm6]	C	T	4.126e^-4	0.939	INTERGENIC
3L	12058569	3L_12058569_SNP [dm3] 3L_12065469_SNP [dm6]	G	A	4.126e^-4	0.939	UPSTREAM rols INTERGENIC
3L	2587646	3L_2587646_SNP [dm3] 3L_2587646_SNP [dm6]	C	A	4.134e^-4	0.939	UTR_5_PRIME RpL8 INTRON RpL8	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
3L	19420529	3L_19420529_SNP [dm3] 3L_19427429_SNP [dm6]	C	T	4.138e^-4	0.939	INTERGENIC
2R	18462181	2R_18462181_SNP [dm3] 2R_22574676_SNP [dm6]	G	A	4.143e^-4	0.939	INTRON dnr1
3L	9424149	3L_9424149_SNP [dm3] 3L_9431049_SNP [dm6]	G	A	4.146e^-4	0.939	SYNONYMOUS_CODING MTF-1 UTR_5_PRIME MTF-1 INTRON MTF-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14481444	3R_14481444_SNP [dm3] 3R_18655722_SNP [dm6]	G	C	4.150e^-4	0.939	NON_SYNONYMOUS_CODING CG31224	TF binding site mE1_TFBS_cad
2R	17145994	2R_17145994_SNP [dm3] 2R_21258489_SNP [dm6]	T	C	4.152e^-4	0.939	INTRON Rgk3
3L	16874418	3L_16874418_SNP [dm3] 3L_16881318_SNP [dm6]	A	G	4.160e^-4	0.939	INTRON Lmpt
X	5414517	X_5414517_SNP [dm3] X_5520484_SNP [dm6]	T	C	4.163e^-4	0.939	INTERGENIC
X	3705395	X_3705395_SNP [dm3] X_3811362_SNP [dm6]	G	C	4.167e^-4	0.939	UPSTREAM ec DOWNSTREAM fd3F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	19141844	2R_19141844_SNP [dm3] 2R_23254321_SNP [dm6]	G	C	4.171e^-4	0.939	INTERGENIC
2L	19480832	2L_19480832_SNP [dm3] 2L_19480832_SNP [dm6]	T	G	4.176e^-4	0.939	INTERGENIC
X	21367072	X_21367072_SNP [dm3] X_21496045_SNP [dm6]	A	T	4.179e^-4	0.939	DOWNSTREAM CR45082 INTERGENIC
3R	10349959	3R_10349959_SNP [dm3] 3R_14524237_SNP [dm6]	C	T	4.180e^-4	0.939	INTRON Pde6
3R	11424701	3R_11424701_SNP [dm3] 3R_15598979_SNP [dm6]	T	G	4.181e^-4	0.939	INTERGENIC
3R	17739771	3R_17739771_SNP [dm3] 3R_21914049_SNP [dm6]	C	T	4.182e^-4	0.939	SYNONYMOUS_CODING CG17843 DOWNSTREAM CG6690
2L	8608242	2L_8608242_SNP [dm3] 2L_8608242_SNP [dm6]	A	T	4.182e^-4	0.939	INTRON Sema-1a
2L	16502394	2L_16502394_SNP [dm3] 2L_16502394_SNP [dm6]	A	T	4.185e^-4	0.939	INTRON Tpr2
2R	17871087	2R_17871087_SNP [dm3] 2R_21983582_SNP [dm6]	G	A	4.189e^-4	0.939	INTERGENIC
3L	3731081	3L_3731081_SNP [dm3] 3L_3731081_SNP [dm6]	G	T	4.194e^-4	0.939	INTRON CG32264
3L	3731082	3L_3731082_SNP [dm3] 3L_3731082_SNP [dm6]	T	C	4.194e^-4	0.939	INTRON CG32264
3R	23201817	3R_23201817_INS [dm3] 3R_27376095_INS [dm6]	T	TACT	4.196e^-4	0.939	UTR_3_PRIME side
2L	15156161	2L_15156161_SNP [dm3] 2L_15156161_SNP [dm6]	G	A	4.200e^-4	0.939	INTERGENIC
X	20222004	X_20222004_SNP [dm3] X_20350977_SNP [dm6]	G	A	4.209e^-4	0.939	INTERGENIC
2L	8608543	2L_8608543_SNP [dm3] 2L_8608543_SNP [dm6]	T	G	4.215e^-4	0.939	INTRON Sema-1a
2L	9134696	2L_9134696_SNP [dm3] 2L_9134696_SNP [dm6]	G	A	4.218e^-4	0.939	INTRON CG32982
2L	7163267	2L_7163267_SNP [dm3] 2L_7163267_SNP [dm6]	C	A	4.238e^-4	0.939	INTERGENIC
2R	9689114	2R_9689114_SNP [dm3] 2R_13801609_SNP [dm6]	A	T	4.244e^-4	0.939	INTRON Cpr50Cb
2R	9689124	2R_9689124_SNP [dm3] 2R_13801619_SNP [dm6]	G	A	4.244e^-4	0.939	INTRON Cpr50Cb
2L	14944529	2L_14944529_SNP [dm3] 2L_14944529_SNP [dm6]	G	C	4.259e^-4	0.939	INTRON CG42313
2R	18453715	2R_18453715_SNP [dm3] 2R_22566210_SNP [dm6]	G	T	4.261e^-4	0.939	SYNONYMOUS_CODING dnr1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2575067	2L_2575067_SNP [dm3] 2L_2575067_SNP [dm6]	C	T	4.264e^-4	0.939	UPSTREAM Rad1 & 1 other DOWNSTREAM insv INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	3705419	X_3705419_SNP [dm3] X_3811386_SNP [dm6]	T	C	4.268e^-4	0.939	UPSTREAM ec DOWNSTREAM fd3F INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	22361841	3R_22361841_SNP [dm3] 3R_26536119_SNP [dm6]	A	T	4.279e^-4	0.939	UPSTREAM plum & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22361845	3R_22361845_SNP [dm3] 3R_26536123_SNP [dm6]	T	A	4.279e^-4	0.939	UPSTREAM plum & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	3079824	3R_3079824_SNP [dm3] 3R_7254102_SNP [dm6]	G	C	4.291e^-4	0.939	NON_SYNONYMOUS_CODING Gld	TF binding site mE1_TFBS_cad
2R	3926949	2R_3926949_SNP [dm3] 2R_8039444_SNP [dm6]	C	A	4.298e^-4	0.939	INTRON Optix	regulatory region REDfly_CRMs
3L	19322260	3L_19322260_SNP [dm3] 3L_19329160_SNP [dm6]	T	A	4.298e^-4	0.939	INTRON pip
2R	9231165	2R_9231165_SNP [dm3] 2R_13343660_SNP [dm6]	G	T	4.303e^-4	0.939	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	21940264	2L_21940264_SNP [dm3] 2L_21940264_SNP [dm6]	G	A	4.324e^-4	0.939	INTERGENIC	transposable element FlyBase
3R	14999529	3R_14999529_SNP [dm3] 3R_19173807_SNP [dm6]	G	A	4.344e^-4	0.939	INTERGENIC
3L	15776675	3L_15776675_SNP [dm3] 3L_15783575_SNP [dm6]	C	T	4.346e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	12934480	3R_12934480_SNP [dm3] 3R_17108758_SNP [dm6]	A	G	4.361e^-4	0.939	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad
X	19762472	X_19762472_SNP [dm3] X_19868439_SNP [dm6]	C	T	4.364e^-4	0.939	SYNONYMOUS_CODING Hers	TF binding site mE1_TFBS_chinmo
3L	347377	3L_347377_SNP [dm3] 3L_347377_SNP [dm6]	T	C	4.371e^-4	0.939	UPSTREAM Ptpmeg & 1 other INTRON Ptpmeg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3L	8666372	3L_8666372_SNP [dm3] 3L_8673272_SNP [dm6]	A	T	4.372e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19420639	X_19420639_SNP [dm3] X_19526606_SNP [dm6]	C	T	4.379e^-4	0.939	DOWNSTREAM CoRest INTRON CoRest	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25624530	3R_25624530_SNP [dm3] 3R_29798808_SNP [dm6]	G	A	4.385e^-4	0.939	SYNONYMOUS_CODING CG7837 UPSTREAM Ice	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1838310	3L_1838310_SNP [dm3] 3L_1838310_SNP [dm6]	G	A	4.387e^-4	0.939	INTERGENIC
3L	13327489	3L_13327489_SNP [dm3] 3L_13334389_SNP [dm6]	A	G	4.387e^-4	0.939	INTERGENIC
X	14266904	X_14266904_SNP [dm3] X_14372871_SNP [dm6]	T	G	4.396e^-4	0.939	INTRON dpr8
2L	17305797	2L_17305797_SNP [dm3] 2L_17305797_SNP [dm6]	A	G	4.404e^-4	0.939	INTERGENIC
3L	9799014	3L_9799014_SNP [dm3] 3L_9805914_SNP [dm6]	T	G	4.408e^-4	0.939	SYNONYMOUS_CODING CG32052	TF binding site BDTNP1_TFBS_twi
2L	6311831	2L_6311831_DEL [dm3] 2L_6311831_DEL [dm6]	CGGAATTAGAGGC...	C	4.411e^-4	0.939	INTRON Ddr
3L	16962377	3L_16962377_SNP [dm3] 3L_16969277_SNP [dm6]	T	A	4.412e^-4	0.939	UPSTREAM Exn DOWNSTREAM Nc73EF INTERGENIC
3L	14285027	3L_14285027_SNP [dm3] 3L_14291927_SNP [dm6]	A	C	4.417e^-4	0.939	INTRON fz
2R	14148023	2R_14148023_SNP [dm3] 2R_18260518_SNP [dm6]	T	A	4.419e^-4	0.939	INTERGENIC
X	14487893	X_14487893_SNP [dm3] X_14593860_SNP [dm6]	A	T	4.421e^-4	0.939	INTRON CG9413
X	5040074	X_5040074_SNP [dm3] X_5146041_SNP [dm6]	A	C	4.422e^-4	0.939	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
2R	16423296	2R_16423296_SNP [dm3] 2R_20535791_SNP [dm6]	A	G	4.431e^-4	0.939	UTR_3_PRIME CG18067 UPSTREAM CG13423 DOWNSTREAM CG18067
3R	25160520	3R_25160520_SNP [dm3] 3R_29334798_SNP [dm6]	G	A	4.432e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14285005	3L_14285005_SNP [dm3] 3L_14291905_SNP [dm6]	T	A	4.436e^-4	0.939	INTRON fz
X	9111332	X_9111332_SNP [dm3] X_9217299_SNP [dm6]	C	A	4.448e^-4	0.939	SYNONYMOUS_CODING CG15369 DOWNSTREAM CG15368 & 1 other
2L	1946706	2L_1946706_SNP [dm3] 2L_1946706_SNP [dm6]	G	A	4.451e^-4	0.939	UTR_5_PRIME CG33673 UPSTREAM CG15357	regulatory region REDfly_CRMs
2L	19909776	2L_19909776_SNP [dm3] 2L_19909776_SNP [dm6]	C	T	4.451e^-4	0.939	SYNONYMOUS_CODING sick DOWNSTREAM CR43097	TF binding site mE1_TFBS_chinmo
X	7466620	X_7466620_SNP [dm3] X_7572587_SNP [dm6]	T	G	4.466e^-4	0.939	INTERGENIC	regulatory region REDfly_CRMs
3R	23196912	3R_23196912_SNP [dm3] 3R_27371190_SNP [dm6]	C	T	4.472e^-4	0.939	UTR_3_PRIME CG42534	TF binding site mE1_TFBS_chinmo
2L	1352869	2L_1352869_SNP [dm3] 2L_1352869_SNP [dm6]	T	G	4.474e^-4	0.939	UPSTREAM CG5556 DOWNSTREAM CG5561 INTERGENIC
2L	1917395	2L_1917395_SNP [dm3] 2L_1917395_SNP [dm6]	A	C	4.478e^-4	0.939	INTRON CG7337
3R	25100424	3R_25100424_SNP [dm3] 3R_29274702_SNP [dm6]	T	G	4.480e^-4	0.939	INTERGENIC	regulatory region REDfly_CRMs
2L	2291442	2L_2291442_SNP [dm3] 2L_2291442_SNP [dm6]	T	C	4.480e^-4	0.939	UPSTREAM robl22E INTERGENIC
3R	24450825	3R_24450825_SNP [dm3] 3R_28625103_SNP [dm6]	G	A	4.482e^-4	0.939	INTRON CG10011
X	21931315	X_21931315_SNP [dm3] X_22529479_SNP [dm6]	A	G	4.483e^-4	0.939	UPSTREAM S6kII INTRON CG17600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	4704342	X_4704342_SNP [dm3] X_4810309_SNP [dm6]	T	C	4.483e^-4	0.939	INTERGENIC
2R	12871337	2R_12871337_SNP [dm3] 2R_16983832_SNP [dm6]	C	T	4.505e^-4	0.939	INTRON Cbp53E
2R	6643173	2R_6643173_SNP [dm3] 2R_10755668_SNP [dm6]	G	A	4.509e^-4	0.939	SYNONYMOUS_CODING CG33144	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	348993	3L_348993_SNP [dm3] 3L_348993_SNP [dm6]	T	A	4.513e^-4	0.939	INTRON Ptpmeg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	16978318	X_16978318_SNP [dm3] X_17084285_SNP [dm6]	G	T	4.516e^-4	0.939	SYNONYMOUS_CODING CG8945 DOWNSTREAM CG4955
2L	5300705	2L_5300705_SNP [dm3] 2L_5300705_SNP [dm6]	A	C	4.517e^-4	0.939	INTRON vri	TF binding site BDTNP1_TFBS_dl
3L	10281097	3L_10281097_MNP [dm3] 3L_10287997_MNP [dm6]	AAT	CTA	4.526e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10565672	2L_10565672_SNP [dm3] 2L_10565672_SNP [dm6]	A	C	4.534e^-4	0.939	INTRON Trim9
3R	16422788	3R_16422788_DEL [dm3] 3R_20597066_DEL [dm6]	TAT	T	4.535e^-4	0.939	INTRON bon	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16504992	2L_16504992_SNP [dm3] 2L_16504992_SNP [dm6]	A	G	4.541e^-4	0.939	INTRON Tpr2
2L	19489567	2L_19489567_SNP [dm3] 2L_19489567_SNP [dm6]	T	A	4.547e^-4	0.939	NON_SYNONYMOUS_CODING CG10194 UPSTREAM CG18094 DOWNSTREAM CG13083	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	18985825	3R_18985825_SNP [dm3] 3R_23160103_SNP [dm6]	G	A	4.550e^-4	0.939	UPSTREAM VhaAC39-2 DOWNSTREAM CG13829 INTERGENIC
2R	16666843	2R_16666843_SNP [dm3] 2R_20779338_SNP [dm6]	G	A	4.564e^-4	0.939	SYNONYMOUS_CODING CG43711 DOWNSTREAM CR44666
2L	14082667	2L_14082667_SNP [dm3] 2L_14082667_SNP [dm6]	T	A	4.571e^-4	0.939	INTRON nAChRalpha5	TF binding site mE1_TFBS_zfh1
2L	20707317	2L_20707317_SNP [dm3] 2L_20707317_SNP [dm6]	C	A	4.578e^-4	0.939	INTRON Hr38	TF binding site mE1_TFBS_sbb
3L	14285007	3L_14285007_SNP [dm3] 3L_14291907_SNP [dm6]	A	T	4.579e^-4	0.939	INTRON fz
2L	9091448	2L_9091448_SNP [dm3] 2L_9091448_SNP [dm6]	G	A	4.580e^-4	0.939	INTERGENIC
2R	7002361	2R_7002361_DEL [dm3] 2R_11114856_DEL [dm6]	AC	G	4.588e^-4	0.939	INTRON luna	TF binding site BDTNP1_TFBS_twi
3R	23199080	3R_23199080_SNP [dm3] 3R_27373358_SNP [dm6]	C	T	4.589e^-4	0.939	DOWNSTREAM CG42534 INTERGENIC
2R	9012396	2R_9012396_SNP [dm3] 2R_13124891_SNP [dm6]	G	A	4.594e^-4	0.939	NON_SYNONYMOUS_CODING CG13325
3L	9541827	3L_9541827_SNP [dm3] 3L_9548727_SNP [dm6]	G	T	4.600e^-4	0.939	INTRON CG42673
3L	7170161	3L_7170161_SNP [dm3] 3L_7177061_SNP [dm6]	G	A	4.600e^-4	0.939	INTRON Dscam2
3L	20219718	3L_20219718_SNP [dm3] 3L_20226618_SNP [dm6]	A	C	4.607e^-4	0.939	UTR_5_PRIME Su_var_3-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17898171	2R_17898171_SNP [dm3] 2R_22010666_SNP [dm6]	G	T	4.610e^-4	0.939	INTRON CG34370
3L	14407154	3L_14407154_INS [dm3] 3L_14414054_INS [dm6]	A	AA	4.615e^-4	0.939	INTRON bbg
2L	13478370	2L_13478370_SNP [dm3] 2L_13478370_SNP [dm6]	A	C	4.620e^-4	0.939	INTRON CG42784
X	13752578	X_13752578_SNP [dm3] X_13858545_SNP [dm6]	C	T	4.625e^-4	0.939	UTR_3_PRIME mamo INTRON mamo
3L	17931363	3L_17931363_SNP [dm3] 3L_17938263_SNP [dm6]	T	C	4.630e^-4	0.939	INTRON CG43174
X	19762961	X_19762961_SNP [dm3] X_19868928_SNP [dm6]	C	T	4.643e^-4	0.939	SYNONYMOUS_CODING Hers	TF binding site mE1_TFBS_chinmo
3L	14285030	3L_14285030_SNP [dm3] 3L_14291930_SNP [dm6]	C	A	4.644e^-4	0.939	INTRON fz
2R	17442678	2R_17442678_SNP [dm3] 2R_21555173_SNP [dm6]	G	A	4.647e^-4	0.939	INTRON Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14741317	2R_14741317_SNP [dm3] 2R_18853812_SNP [dm6]	G	A	4.648e^-4	0.939	SYNONYMOUS_CODING Jheh1 UPSTREAM CG18190	TF binding site mE1_TFBS_cad
3R	12702744	3R_12702744_SNP [dm3] 3R_16877022_SNP [dm6]	C	A	4.666e^-4	0.939	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	13985726	3R_13985726_SNP [dm3] 3R_18160004_SNP [dm6]	G	C	4.683e^-4	0.939	UPSTREAM CR45104 DOWNSTREAM CG14315 INTERGENIC	TF binding site mE1_TFBS_sbb
X	5070622	X_5070622_SNP [dm3] X_5176589_SNP [dm6]	A	C	4.687e^-4	0.939	UTR_5_PRIME rg UTR_3_PRIME CG15465 INTRON rg
3L	10982156	3L_10982156_SNP [dm3] 3L_10989056_SNP [dm6]	G	T	4.691e^-4	0.939	INTRON klu
2R	17899041	2R_17899041_SNP [dm3] 2R_22011536_SNP [dm6]	C	G	4.693e^-4	0.939	INTRON CG34370
2R	18056515	2R_18056515_SNP [dm3] 2R_22169010_SNP [dm6]	T	C	4.696e^-4	0.939	INTRON a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2990499	3L_2990499_SNP [dm3] 3L_2990499_SNP [dm6]	G	T	4.710e^-4	0.939	INTERGENIC
2L	20469099	2L_20469099_SNP [dm3] 2L_20469099_SNP [dm6]	C	T	4.712e^-4	0.939	INTRON CR44980
2L	16599115	2L_16599115_SNP [dm3] 2L_16599115_SNP [dm6]	A	T	4.712e^-4	0.939	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
3L	2565948	3L_2565948_SNP [dm3] 3L_2565948_SNP [dm6]	T	C	4.714e^-4	0.939	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3585406	2R_3585406_SNP [dm3] 2R_7697901_SNP [dm6]	A	T	4.717e^-4	0.939	INTRON CG1399	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8907329	3R_8907329_INS [dm3] 3R_13081607_INS [dm6]	A	AA	4.718e^-4	0.939	INTERGENIC
2L	11191052	2L_11191052_SNP [dm3] 2L_11191052_SNP [dm6]	T	C	4.720e^-4	0.939	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9745682	2L_9745682_DEL [dm3] 2L_9745682_DEL [dm6]	CT	C	4.721e^-4	0.939	INTRON Nckx30C
2R	16423278	2R_16423278_INS [dm3] 2R_20535773_INS [dm6]	A	AT	4.721e^-4	0.939	UTR_3_PRIME CG18067 UPSTREAM CG13423 DOWNSTREAM CG18067
3L	354328	3L_354328_SNP [dm3] 3L_354328_SNP [dm6]	G	C	4.724e^-4	0.939	SYNONYMOUS_CODING Ptpmeg	TF binding site mE1_TFBS_chinmo
3L	4925335	3L_4925335_SNP [dm3] 3L_4925335_SNP [dm6]	T	C	4.727e^-4	0.939	INTERGENIC
3R	20803096	3R_20803096_SNP [dm3] 3R_24977374_SNP [dm6]	G	A	4.728e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17906125	2R_17906125_SNP [dm3] 2R_22018620_SNP [dm6]	A	T	4.728e^-4	0.939	INTRON CG34370
X	5414547	X_5414547_SNP [dm3] X_5520514_SNP [dm6]	A	T	4.732e^-4	0.939	INTERGENIC
3L	20166567	3L_20166567_SNP [dm3] 3L_20173467_SNP [dm6]	A	T	4.735e^-4	0.939	INTRON CG42674	TF binding site BDTNP1_TFBS_twi
3L	16932028	3L_16932028_SNP [dm3] 3L_16938928_SNP [dm6]	G	C	4.735e^-4	0.939	NON_SYNONYMOUS_CODING CG13022 DOWNSTREAM Cpr73D
X	4511069	X_4511069_SNP [dm3] X_4617036_SNP [dm6]	C	T	4.737e^-4	0.939	UPSTREAM peb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	10281101	3L_10281101_SNP [dm3] 3L_10288001_SNP [dm6]	G	C	4.738e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8359223	2L_8359223_SNP [dm3] 2L_8359223_SNP [dm6]	C	T	4.748e^-4	0.939	SYNONYMOUS_CODING CG7627	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16227739	2R_16227739_SNP [dm3] 2R_20340234_SNP [dm6]	A	G	4.754e^-4	0.939	INTERGENIC
3R	16059072	3R_16059072_SNP [dm3] 3R_20233350_SNP [dm6]	A	G	4.766e^-4	0.939	INTRON Nlg4
2R	5978590	2R_5978590_SNP [dm3] 2R_10091085_SNP [dm6]	G	A	4.769e^-4	0.939	INTRON CG2269
2R	7206103	2R_7206103_SNP [dm3] 2R_11318598_SNP [dm6]	T	A	4.774e^-4	0.939	UTR_5_PRIME nompA UPSTREAM nompA
2L	6143274	2L_6143274_SNP [dm3] 2L_6143274_SNP [dm6]	G	A	4.776e^-4	0.939	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5811674	X_5811674_SNP [dm3] X_5917641_SNP [dm6]	T	C	4.776e^-4	0.939	UPSTREAM CG3011 INTRON CG3726	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	17681118	3L_17681118_SNP [dm3] 3L_17688018_SNP [dm6]	C	A	4.784e^-4	0.939	INTERGENIC
2L	7551326	2L_7551326_SNP [dm3] 2L_7551326_SNP [dm6]	T	C	4.804e^-4	0.939	INTRON RapGAP1
3R	25170792	3R_25170792_SNP [dm3] 3R_29345070_SNP [dm6]	C	G	4.812e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	26051192	3R_26051192_SNP [dm3] 3R_30225470_SNP [dm6]	T	G	4.814e^-4	0.939	INTERGENIC
2R	420396	2R_420396_SNP [dm3] 2R_4532891_SNP [dm6]	G	A	4.821e^-4	0.939	INTERGENIC	transposable element FlyBase
2L	4135408	2L_4135408_SNP [dm3] 2L_4135408_SNP [dm6]	C	G	4.832e^-4	0.939	INTERGENIC
3L	12329557	3L_12329557_SNP [dm3] 3L_12336457_SNP [dm6]	T	A	4.835e^-4	0.939	UPSTREAM CG10418 & 1 other DOWNSTREAM CG32105 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	17999623	3L_17999623_SNP [dm3] 3L_18006523_SNP [dm6]	A	G	4.843e^-4	0.939	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5256942	2L_5256942_SNP [dm3] 2L_5256942_SNP [dm6]	A	T	4.846e^-4	0.939	INTRON tkv	TF binding site mE1_TFBS_cad
2R	12879948	2R_12879948_SNP [dm3] 2R_16992443_SNP [dm6]	T	A	4.860e^-4	0.939	INTRON Cbp53E
2R	12222684	2R_12222684_SNP [dm3] 2R_16335179_SNP [dm6]	C	T	4.863e^-4	0.939	UPSTREAM Hmgs INTRON Vha44	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17123050	2R_17123050_SNP [dm3] 2R_21235545_SNP [dm6]	A	G	4.866e^-4	0.939	INTRON ASPP
2L	3565786	2L_3565786_SNP [dm3] 2L_3565786_SNP [dm6]	T	C	4.868e^-4	0.939	INTERGENIC
2R	6857330	2R_6857330_SNP [dm3] 2R_10969825_SNP [dm6]	C	T	4.874e^-4	0.939	INTERGENIC
2R	16088784	2R_16088784_SNP [dm3] 2R_20201279_SNP [dm6]	A	G	4.876e^-4	0.939	INTERGENIC
3R	7144180	3R_7144180_SNP [dm3] 3R_11318458_SNP [dm6]	A	G	4.879e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5138737	3L_5138737_SNP [dm3] 3L_5145637_SNP [dm6]	G	T	4.883e^-4	0.939	SYNONYMOUS_CODING CG10671 UPSTREAM Aats-ala-m	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16451225	3L_16451225_SNP [dm3] 3L_16458125_SNP [dm6]	C	A	4.884e^-4	0.939	INTRON CG33158
2L	3834829	2L_3834829_SNP [dm3] 2L_3834829_SNP [dm6]	A	G	4.891e^-4	0.939	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	3934385	3R_3934385_SNP [dm3] 3R_8108663_SNP [dm6]	A	G	4.892e^-4	0.939	INTRON puc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16495870	2L_16495870_SNP [dm3] 2L_16495870_SNP [dm6]	C	T	4.895e^-4	0.939	UPSTREAM Tpr2 INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	9081939	2L_9081939_SNP [dm3] 2L_9081939_SNP [dm6]	T	C	4.901e^-4	0.939	INTERGENIC
2L	8331646	2L_8331646_SNP [dm3] 2L_8331646_SNP [dm6]	A	C	4.906e^-4	0.939	INTRON CG14275
3L	10284319	3L_10284319_SNP [dm3] 3L_10291219_SNP [dm6]	C	A	4.913e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17232678	X_17232678_SNP [dm3] X_17338645_SNP [dm6]	A	G	4.920e^-4	0.939	INTERGENIC
3R	22361834	3R_22361834_SNP [dm3] 3R_26536112_SNP [dm6]	T	G	4.926e^-4	0.939	UPSTREAM plum & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	19331868	2R_19331868_SNP [dm3] 2R_23444345_SNP [dm6]	A	G	4.936e^-4	0.939	START_GAINED CG43795 UTR_5_PRIME CG43795
3R	6504666	3R_6504666_SNP [dm3] 3R_10678944_SNP [dm6]	G	A	4.948e^-4	0.939	SYNONYMOUS_CODING CG14688	TF binding site mE1_TFBS_chinmo
3L	10281092	3L_10281092_SNP [dm3] 3L_10287992_SNP [dm6]	A	G	4.963e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10281093	3L_10281093_SNP [dm3] 3L_10287993_SNP [dm6]	A	G	4.963e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10555008	3L_10555008_DEL [dm3] 3L_10561908_DEL [dm6]	GTGCTACTG	G	4.964e^-4	0.939	INTRON A2bp1
2R	10809177	2R_10809177_SNP [dm3] 2R_14921672_SNP [dm6]	G	A	4.965e^-4	0.939	INTRON CG10249
3L	15559662	3L_15559662_SNP [dm3] 3L_15566562_SNP [dm6]	G	A	4.972e^-4	0.939	UTR_5_PRIME CG6498 INTRON CG6498	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	17494887	2R_17494887_SNP [dm3] 2R_21607382_SNP [dm6]	A	G	4.977e^-4	0.939	UPSTREAM CR43243 & 1 other INTRON CG10433	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	27650401	3R_27650401_INS [dm3] 3R_31824679_INS [dm6]	C	CAC	4.982e^-4	0.939	INTRON RhoGAP100F
X	4704370	X_4704370_SNP [dm3] X_4810337_SNP [dm6]	T	A	4.991e^-4	0.939	INTERGENIC
3R	24420440	3R_24420440_INS [dm3] 3R_28594718_INS [dm6]	G	GACTCAGTGG	4.992e^-4	0.939	DOWNSTREAM CR43440 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8595364	3L_8595364_SNP [dm3] 3L_8602264_SNP [dm6]	G	A	4.994e^-4	0.939	SYNONYMOUS_CODING RpL14 DOWNSTREAM CG5989 & 2 others	TF binding site mE1_TFBS_sens
3R	20805840	3R_20805840_SNP [dm3] 3R_24980118_SNP [dm6]	G	T	5.001e^-4	0.939	INTERGENIC
3R	20805842	3R_20805842_SNP [dm3] 3R_24980120_SNP [dm6]	C	T	5.001e^-4	0.939	INTERGENIC
2R	9312753	2R_9312753_SNP [dm3] 2R_13425248_SNP [dm6]	G	C	5.018e^-4	0.939	UPSTREAM CG42321 INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20803453	3R_20803453_SNP [dm3] 3R_24977731_SNP [dm6]	T	A	5.027e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13107297	2R_13107297_SNP [dm3] 2R_17219792_SNP [dm6]	A	G	5.029e^-4	0.939	INTRON mbl
3R	25213012	3R_25213012_SNP [dm3] 3R_29387290_SNP [dm6]	T	C	5.030e^-4	0.939	INTRON Ptp99A
2R	5682839	2R_5682839_SNP [dm3] 2R_9795334_SNP [dm6]	T	C	5.030e^-4	0.939	UTR_5_PRIME CG1698 INTRON CG1688 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10842896	3L_10842896_SNP [dm3] 3L_10849796_SNP [dm6]	G	T	5.044e^-4	0.939	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	349294	3L_349294_SNP [dm3] 3L_349294_SNP [dm6]	G	A	5.045e^-4	0.939	INTRON Ptpmeg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	354489	3L_354489_SNP [dm3] 3L_354489_SNP [dm6]	A	C	5.045e^-4	0.939	INTRON Ptpmeg	TF binding site mE1_TFBS_chinmo
3L	355815	3L_355815_SNP [dm3] 3L_355815_SNP [dm6]	C	T	5.045e^-4	0.939	UTR_3_PRIME Ptpmeg UPSTREAM CG1231 DOWNSTREAM Ptpmeg
3L	359202	3L_359202_SNP [dm3] 3L_359202_SNP [dm6]	C	T	5.045e^-4	0.939	DOWNSTREAM Roc1b INTRON Cdc5	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	367225	3L_367225_SNP [dm3] 3L_367225_SNP [dm6]	C	G	5.045e^-4	0.939	UTR_3_PRIME trh UPSTREAM CG13884
3L	369195	3L_369195_SNP [dm3] 3L_369195_SNP [dm6]	A	C	5.045e^-4	0.939	INTRON trh	TF binding site mE1_TFBS_chinmo
3R	24106806	3R_24106806_SNP [dm3] 3R_28281084_SNP [dm6]	A	G	5.051e^-4	0.939	INTERGENIC
3L	1450630	3L_1450630_SNP [dm3] 3L_1450630_SNP [dm6]	T	A	5.064e^-4	0.939	INTRON Ptp61F
2L	539849	2L_539849_SNP [dm3] 2L_539849_SNP [dm6]	C	T	5.069e^-4	0.939	NON_SYNONYMOUS_CODING ush DOWNSTREAM lwr	TF binding site mE1_TFBS_cad
X	6403538	X_6403538_SNP [dm3] X_6509505_SNP [dm6]	C	T	5.072e^-4	0.939	INTRON CG42340	TF binding site mE1_TFBS_kn
3L	6541564	3L_6541564_DEL [dm3] 3L_6548464_DEL [dm6]	CA	T	5.076e^-4	0.939	INTRON sfl
3R	9710312	3R_9710312_SNP [dm3] 3R_13884590_SNP [dm6]	T	C	5.081e^-4	0.939	INTERGENIC
3R	2991136	3R_2991136_SNP [dm3] 3R_7165414_SNP [dm6]	G	A	5.084e^-4	0.939	INTRON sas
2L	14572266	2L_14572266_SNP [dm3] 2L_14572266_SNP [dm6]	G	A	5.088e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14039476	3L_14039476_SNP [dm3] 3L_14046376_SNP [dm6]	G	A	5.091e^-4	0.939	SYNONYMOUS_CODING blue	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8908837	2R_8908837_SNP [dm3] 2R_13021332_SNP [dm6]	T	G	5.097e^-4	0.939	INTERGENIC
2L	16383205	2L_16383205_SNP [dm3] 2L_16383205_SNP [dm6]	G	C	5.105e^-4	0.939	INTERGENIC
2L	8360123	2L_8360123_SNP [dm3] 2L_8360123_SNP [dm6]	T	A	5.123e^-4	0.939	INTRON CG7627	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10281090	3L_10281090_SNP [dm3] 3L_10287990_SNP [dm6]	A	T	5.123e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9265265	2R_9265265_SNP [dm3] 2R_13377760_SNP [dm6]	C	T	5.125e^-4	0.939	UPSTREAM CG10814 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	20402454	3R_20402454_INS [dm3] 3R_24576732_INS [dm6]	A	ATA	5.153e^-4	0.939	INTRON CG13624
3L	17815137	3L_17815137_SNP [dm3] 3L_17822037_SNP [dm6]	T	C	5.160e^-4	0.939	SYNONYMOUS_CODING Ir75c
3L	13548552	3L_13548552_SNP [dm3] 3L_13555452_SNP [dm6]	C	T	5.160e^-4	0.939	INTRON bru-3
2R	3128560	2R_3128560_SNP [dm3] 2R_7241055_SNP [dm6]	C	T	5.162e^-4	0.939	INTERGENIC
2L	6950651	2L_6950651_SNP [dm3] 2L_6950651_SNP [dm6]	G	A	5.163e^-4	0.939	UPSTREAM Gas41 INTRON SA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	767137	3L_767137_SNP [dm3] 3L_767137_SNP [dm6]	C	T	5.163e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	9091619	2L_9091619_SNP [dm3] 2L_9091619_SNP [dm6]	G	T	5.165e^-4	0.939	INTERGENIC
3L	777794	3L_777794_SNP [dm3] 3L_777794_SNP [dm6]	A	G	5.169e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2587599	3L_2587599_SNP [dm3] 3L_2587599_SNP [dm6]	T	G	5.171e^-4	0.939	UTR_5_PRIME RpL8 INTRON RpL8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3R	25624564	3R_25624564_SNP [dm3] 3R_29798842_SNP [dm6]	A	G	5.179e^-4	0.939	UPSTREAM Ice INTRON CG7837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16423264	2R_16423264_SNP [dm3] 2R_20535759_SNP [dm6]	C	G	5.189e^-4	0.939	UTR_3_PRIME CG18067 UPSTREAM CG13423 DOWNSTREAM CG18067
3L	2572377	3L_2572377_SNP [dm3] 3L_2572377_SNP [dm6]	C	T	5.190e^-4	0.939	INTRON msn
3L	351992	3L_351992_SNP [dm3] 3L_351992_SNP [dm6]	G	A	5.192e^-4	0.939	INTRON Ptpmeg
3L	347330	3L_347330_SNP [dm3] 3L_347330_SNP [dm6]	T	A	5.195e^-4	0.939	UPSTREAM Ptpmeg & 1 other INTRON Ptpmeg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2L	11100317	2L_11100317_SNP [dm3] 2L_11100317_SNP [dm6]	T	C	5.196e^-4	0.939	SYNONYMOUS_CODING Ge-1 DOWNSTREAM Reps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9980411	3R_9980411_SNP [dm3] 3R_14154689_SNP [dm6]	G	A	5.196e^-4	0.939	UPSTREAM CG9722 & 1 other DOWNSTREAM CG31533 INTERGENIC
3L	17427048	3L_17427048_SNP [dm3] 3L_17433948_SNP [dm6]	G	A	5.198e^-4	0.939	SYNONYMOUS_CODING CG32176 UPSTREAM frc & 1 other DOWNSTREAM CG12229	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx

By genomic position
Variant impact
Gene name

mn_Resp_Citral phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results