DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.043e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.06857

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2131 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	9762848	2L_9762848_SNP [dm3] 2L_9762848_SNP [dm6]	A	G	3.391e^-7	0.218	UPSTREAM und DOWNSTREAM zf30C INTRON Taf11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	6765765	3L_6765765_SNP [dm3] 3L_6772665_SNP [dm6]	C	T	5.179e^-7	0.218	INTERGENIC
2L	9762889	2L_9762889_SNP [dm3] 2L_9762889_SNP [dm6]	G	C	5.212e^-7	0.218	UPSTREAM und DOWNSTREAM zf30C INTRON Taf11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	9763025	2L_9763025_SNP [dm3] 2L_9763025_SNP [dm6]	C	T	6.230e^-7	0.218	SYNONYMOUS_CODING Taf11 UPSTREAM und DOWNSTREAM zf30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	9762822	2L_9762822_SNP [dm3] 2L_9762822_SNP [dm6]	C	A	6.712e^-7	0.218	SYNONYMOUS_CODING Taf11 UPSTREAM und DOWNSTREAM zf30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	4396992	2L_4396992_SNP [dm3] 2L_4396992_SNP [dm6]	C	T	6.970e^-7	0.218	SYNONYMOUS_CODING l_2_k05819
2L	9762947	2L_9762947_SNP [dm3] 2L_9762947_SNP [dm6]	C	T	8.148e^-7	0.218	SYNONYMOUS_CODING Taf11 UPSTREAM und DOWNSTREAM zf30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	14902643	X_14902643_SNP [dm3] X_15008610_SNP [dm6]	C	T	1.215e^-6	0.285	UTR_3_PRIME eag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4396876	2L_4396876_SNP [dm3] 2L_4396876_SNP [dm6]	G	A	2.079e^-6	0.405	SYNONYMOUS_CODING l_2_k05819
X	18146308	X_18146308_SNP [dm3] X_18252275_SNP [dm6]	A	T	2.157e^-6	0.405	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9068891	3R_9068891_SNP [dm3] 3R_13243169_SNP [dm6]	A	G	2.421e^-6	0.413	INTRON Ace
3L	6766028	3L_6766028_SNP [dm3] 3L_6772928_SNP [dm6]	G	A	3.052e^-6	0.477	INTERGENIC
3L	14106199	3L_14106199_SNP [dm3] 3L_14113099_SNP [dm6]	G	A	3.688e^-6	0.532	SYNONYMOUS_CODING Sox21b
2L	8073539	2L_8073539_SNP [dm3] 2L_8073539_SNP [dm6]	T	C	7.424e^-6	0.8	SYNONYMOUS_CODING Trf UPSTREAM MED20 DOWNSTREAM Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	9557636	2R_9557636_SNP [dm3] 2R_13670131_SNP [dm6]	G	A	7.457e^-6	0.8	SYNONYMOUS_CODING CG18368 INTRON fas
2R	6722174	2R_6722174_SNP [dm3] 2R_10834669_SNP [dm6]	C	A	7.490e^-6	0.8	UPSTREAM CG12344 INTRON CG12344
3R	13565050	3R_13565050_SNP [dm3] 3R_17739328_SNP [dm6]	T	A	7.595e^-6	0.8	UPSTREAM TyrRII INTRON TyrRII
2L	9763076	2L_9763076_SNP [dm3] 2L_9763076_SNP [dm6]	C	T	7.676e^-6	0.8	SYNONYMOUS_CODING Taf11 UPSTREAM und DOWNSTREAM zf30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	17783225	3L_17783225_SNP [dm3] 3L_17790125_SNP [dm6]	A	C	8.619e^-6	0.8	DOWNSTREAM CG42815 INTERGENIC
3R	9070158	3R_9070158_SNP [dm3] 3R_13244436_SNP [dm6]	A	G	8.790e^-6	0.8	INTRON Ace
3L	5444498	3L_5444498_SNP [dm3] 3L_5451398_SNP [dm6]	A	G	9.773e^-6	0.8	INTERGENIC
2R	9772188	2R_9772188_SNP [dm3] 2R_13884683_SNP [dm6]	G	A	1.042e^-5	0.8	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9762869	2L_9762869_SNP [dm3] 2L_9762869_SNP [dm6]	T	G	1.147e^-5	0.8	UPSTREAM und DOWNSTREAM zf30C INTRON Taf11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	8686746	3R_8686746_SNP [dm3] 3R_12861024_SNP [dm6]	C	T	1.164e^-5	0.8	INTERGENIC
2L	4398264	2L_4398264_SNP [dm3] 2L_4398264_SNP [dm6]	C	T	1.207e^-5	0.8	SYNONYMOUS_CODING l_2_k05819	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9769209	2L_9769209_SNP [dm3] 2L_9769209_SNP [dm6]	A	G	1.232e^-5	0.8	SYNONYMOUS_CODING CG17633 DOWNSTREAM CG4017 INTRON ppk18	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18272722	2R_18272722_SNP [dm3] 2R_22385217_SNP [dm6]	A	T	1.248e^-5	0.8	INTRON CG13506
2L	4397271	2L_4397271_SNP [dm3] 2L_4397271_SNP [dm6]	C	T	1.262e^-5	0.8	SYNONYMOUS_CODING l_2_k05819
2R	6757322	2R_6757322_SNP [dm3] 2R_10869817_SNP [dm6]	C	T	1.298e^-5	0.8	INTRON CG30015
3L	14107937	3L_14107937_SNP [dm3] 3L_14114837_SNP [dm6]	G	A	1.390e^-5	0.8	INTRON Sox21b
3L	17678020	3L_17678020_SNP [dm3] 3L_17684920_SNP [dm6]	C	T	1.417e^-5	0.8	INTERGENIC
2L	2531422	2L_2531422_SNP [dm3] 2L_2531422_SNP [dm6]	A	C	1.427e^-5	0.8	INTERGENIC
2R	6721973	2R_6721973_SNP [dm3] 2R_10834468_SNP [dm6]	C	A	1.541e^-5	0.8	UPSTREAM CG12344 INTRON CG12344
2L	8073593	2L_8073593_SNP [dm3] 2L_8073593_SNP [dm6]	G	A	1.580e^-5	0.8	SYNONYMOUS_CODING Trf UPSTREAM MED20 DOWNSTREAM Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	4853327	2R_4853327_SNP [dm3] 2R_8965822_SNP [dm6]	T	G	1.589e^-5	0.8	INTRON CG8216
3L	17677840	3L_17677840_SNP [dm3] 3L_17684740_SNP [dm6]	T	A	1.598e^-5	0.8	INTERGENIC
3L	8215472	3L_8215472_SNP [dm3] 3L_8222372_SNP [dm6]	T	G	1.716e^-5	0.8	INTRON CG13678
X	5303337	X_5303337_SNP [dm3] X_5409304_SNP [dm6]	T	A	1.727e^-5	0.8	INTRON NAAT1	TF binding site BDTNP1_TFBS_twi
2R	4852907	2R_4852907_SNP [dm3] 2R_8965402_SNP [dm6]	C	G	1.759e^-5	0.8	SYNONYMOUS_CODING CG8216
2L	9654879	2L_9654879_SNP [dm3] 2L_9654879_SNP [dm6]	C	A	1.787e^-5	0.8	NON_SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13127262	3L_13127262_SNP [dm3] 3L_13134162_SNP [dm6]	G	T	1.804e^-5	0.8	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1709266	3L_1709266_INS [dm3] 3L_1709266_INS [dm6]	G	GCG	1.834e^-5	0.8	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	2660717	3L_2660717_SNP [dm3] 3L_2660717_SNP [dm6]	C	T	1.922e^-5	0.8	UTR_3_PRIME CG33233 UPSTREAM CG33234 INTRON Fife & 1 other
2L	9769383	2L_9769383_SNP [dm3] 2L_9769383_SNP [dm6]	A	G	1.926e^-5	0.8	SYNONYMOUS_CODING CG17633 DOWNSTREAM CG4017 INTRON ppk18	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17735433	2R_17735433_DEL [dm3] 2R_21847928_DEL [dm6]	GCTAAT	G	2.053e^-5	0.8	DOWNSTREAM tRNA:CR30406 INTERGENIC
3R	7589637	3R_7589637_SNP [dm3] 3R_11763915_SNP [dm6]	T	A	2.097e^-5	0.8	UTR_5_PRIME Lk6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4397277	2L_4397277_SNP [dm3] 2L_4397277_SNP [dm6]	A	C	2.105e^-5	0.8	SYNONYMOUS_CODING l_2_k05819
2R	9557630	2R_9557630_SNP [dm3] 2R_13670125_SNP [dm6]	G	A	2.182e^-5	0.8	SYNONYMOUS_CODING CG18368 INTRON fas
3L	14104076	3L_14104076_SNP [dm3] 3L_14110976_SNP [dm6]	G	A	2.200e^-5	0.8	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	16606406	2R_16606406_SNP [dm3] 2R_20718901_SNP [dm6]	A	G	2.202e^-5	0.8	INTRON dpr	TF binding site mE1_TFBS_inv
2L	8073572	2L_8073572_SNP [dm3] 2L_8073572_SNP [dm6]	A	C	2.236e^-5	0.8	SYNONYMOUS_CODING Trf UPSTREAM MED20 DOWNSTREAM Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	17413926	2L_17413926_SNP [dm3] 2L_17413926_SNP [dm6]	T	A	2.295e^-5	0.8	SYNONYMOUS_CODING Dif DOWNSTREAM CG15141 & 1 other
2L	9767929	2L_9767929_SNP [dm3] 2L_9767929_SNP [dm6]	G	A	2.508e^-5	0.8	SYNONYMOUS_CODING CG4017 INTRON ppk18
3L	3104377	3L_3104377_SNP [dm3] 3L_3104377_SNP [dm6]	G	A	2.525e^-5	0.8	INTRON Cht7
3R	17761855	3R_17761855_SNP [dm3] 3R_21936133_SNP [dm6]	G	A	2.592e^-5	0.8	INTERGENIC
2L	9763142	2L_9763142_SNP [dm3] 2L_9763142_SNP [dm6]	T	C	2.626e^-5	0.8	SYNONYMOUS_CODING Taf11 UPSTREAM und DOWNSTREAM zf30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	12300435	3R_12300435_SNP [dm3] 3R_16474713_SNP [dm6]	A	G	2.630e^-5	0.8	SYNONYMOUS_CODING Gyc-89Da	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	6721985	2R_6721985_SNP [dm3] 2R_10834480_SNP [dm6]	A	C	2.638e^-5	0.8	UPSTREAM CG12344 INTRON CG12344
3R	9068911	3R_9068911_DEL [dm3] 3R_13243189_DEL [dm6]	TGCACC	G	2.656e^-5	0.8	INTRON Ace
2L	9654862	2L_9654862_SNP [dm3] 2L_9654862_SNP [dm6]	C	T	2.672e^-5	0.8	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8677877	3R_8677877_SNP [dm3] 3R_12852155_SNP [dm6]	A	C	2.687e^-5	0.8	INTERGENIC
2R	16605931	2R_16605931_SNP [dm3] 2R_20718426_SNP [dm6]	G	A	2.696e^-5	0.8	INTRON dpr
X	12655726	X_12655726_SNP [dm3] X_12761693_SNP [dm6]	C	T	2.741e^-5	0.8	NON_SYNONYMOUS_CODING CG12717	TF binding site BDTNP1_TFBS_dl
3R	9156972	3R_9156972_SNP [dm3] 3R_13331250_SNP [dm6]	G	A	2.766e^-5	0.8	INTRON PK2-R2
3L	4434187	3L_4434187_INS [dm3] 3L_4434187_INS [dm6]	G	GAG	2.783e^-5	0.8	INTRON nAChRbeta1
2L	14065949	2L_14065949_SNP [dm3] 2L_14065949_SNP [dm6]	C	T	2.832e^-5	0.8	INTRON nAChRalpha5
2R	6722068	2R_6722068_SNP [dm3] 2R_10834563_SNP [dm6]	A	G	2.951e^-5	0.8	UPSTREAM CG12344 INTRON CG12344
3R	9169164	3R_9169164_SNP [dm3] 3R_13343442_SNP [dm6]	C	T	3.024e^-5	0.8	INTRON PK2-R1
2L	4393019	2L_4393019_SNP [dm3] 2L_4393019_SNP [dm6]	T	C	3.093e^-5	0.8	DOWNSTREAM Tps1 INTRON CG3652	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11872416	3L_11872416_SNP [dm3] 3L_11879316_SNP [dm6]	A	T	3.196e^-5	0.8	NON_SYNONYMOUS_CODING CG14128 INTRON CG44837
2R	13837428	2R_13837428_SNP [dm3] 2R_17949923_SNP [dm6]	A	T	3.258e^-5	0.8	INTERGENIC
2L	10553767	2L_10553767_SNP [dm3] 2L_10553767_SNP [dm6]	C	T	3.260e^-5	0.8	INTRON Trim9	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10554246	2L_10554246_SNP [dm3] 2L_10554246_SNP [dm6]	T	G	3.302e^-5	0.8	INTRON Trim9	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9292115	3R_9292115_SNP [dm3] 3R_13466393_SNP [dm6]	C	G	3.360e^-5	0.8	UPSTREAM CR17025 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8687349	3R_8687349_SNP [dm3] 3R_12861627_SNP [dm6]	G	T	3.389e^-5	0.8	INTERGENIC
3L	15012617	3L_15012617_SNP [dm3] 3L_15019517_SNP [dm6]	A	G	3.399e^-5	0.8	INTRON Sytbeta	TF binding site mE1_TFBS_cad
2L	9762489	2L_9762489_SNP [dm3] 2L_9762489_SNP [dm6]	C	T	3.406e^-5	0.8	UTR_3_PRIME Taf11 UPSTREAM und DOWNSTREAM zf30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	9763247	2L_9763247_SNP [dm3] 2L_9763247_SNP [dm6]	T	G	3.436e^-5	0.8	UTR_5_PRIME Taf11 UPSTREAM und DOWNSTREAM zf30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	8684064	3R_8684064_SNP [dm3] 3R_12858342_SNP [dm6]	A	T	3.472e^-5	0.8	UPSTREAM CG10126 INTRON CG10126
X	15990838	X_15990838_SNP [dm3] X_16096805_SNP [dm6]	G	A	3.497e^-5	0.8	UPSTREAM CG42354 INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn
2R	13060977	2R_13060977_SNP [dm3] 2R_17173472_SNP [dm6]	C	T	3.533e^-5	0.8	INTERGENIC
2L	12605980	2L_12605980_SNP [dm3] 2L_12605980_SNP [dm6]	C	T	3.583e^-5	0.8	INTRON nub
2L	9763278	2L_9763278_SNP [dm3] 2L_9763278_SNP [dm6]	T	A	3.631e^-5	0.8	UPSTREAM und & 1 other DOWNSTREAM zf30C INTERGENIC	TF binding site mE1_TFBS_cad
2L	9763280	2L_9763280_SNP [dm3] 2L_9763280_SNP [dm6]	A	C	3.657e^-5	0.8	UPSTREAM und & 1 other DOWNSTREAM zf30C INTERGENIC	TF binding site mE1_TFBS_cad
2R	1370622	2R_1370622_SNP [dm3] 2R_5483117_SNP [dm6]	T	G	3.659e^-5	0.8	INTRON CG30440	transposable element FlyBase
3R	18322716	3R_18322716_SNP [dm3] 3R_22496994_SNP [dm6]	C	T	3.716e^-5	0.8	UPSTREAM Octbeta1R INTERGENIC	TF binding site mE1_TFBS_inv
3L	13489463	3L_13489463_SNP [dm3] 3L_13496363_SNP [dm6]	T	C	3.751e^-5	0.8	INTRON Tgi
2L	9769368	2L_9769368_SNP [dm3] 2L_9769368_SNP [dm6]	A	G	3.768e^-5	0.8	SYNONYMOUS_CODING CG17633 DOWNSTREAM CG4017 INTRON ppk18	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14327767	2L_14327767_SNP [dm3] 2L_14327767_SNP [dm6]	T	A	3.803e^-5	0.8	UTR_3_PRIME wb UPSTREAM ms_2_34Fe
3R	9169168	3R_9169168_SNP [dm3] 3R_13343446_SNP [dm6]	G	T	3.839e^-5	0.8	INTRON PK2-R1
2R	5108960	2R_5108960_SNP [dm3] 2R_9221455_SNP [dm6]	T	C	4.037e^-5	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25106441	3R_25106441_SNP [dm3] 3R_29280719_SNP [dm6]	G	A	4.037e^-5	0.814	INTERGENIC	regulatory region REDfly_CRMs
3R	9099346	3R_9099346_SNP [dm3] 3R_13273624_SNP [dm6]	A	G	4.157e^-5	0.814	INTERGENIC
3R	9297603	3R_9297603_SNP [dm3] 3R_13471881_SNP [dm6]	C	A	4.251e^-5	0.814	INTERGENIC
2R	18272754	2R_18272754_SNP [dm3] 2R_22385249_SNP [dm6]	C	A	4.263e^-5	0.814	INTRON CG13506
3R	9183475	3R_9183475_SNP [dm3] 3R_13357753_SNP [dm6]	G	C	4.437e^-5	0.814	INTERGENIC
X	12567283	X_12567283_SNP [dm3] X_12673250_SNP [dm6]	A	G	4.482e^-5	0.814	INTRON Tis11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	723975	2L_723975_SNP [dm3] 2L_723975_SNP [dm6]	G	C	4.499e^-5	0.814	INTERGENIC
2R	19981343	2R_19981343_SNP [dm3] 2R_24093820_SNP [dm6]	C	T	4.549e^-5	0.814	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad
2L	4397283	2L_4397283_SNP [dm3] 2L_4397283_SNP [dm6]	T	A	4.573e^-5	0.814	SYNONYMOUS_CODING l_2_k05819
X	5303302	X_5303302_SNP [dm3] X_5409269_SNP [dm6]	A	G	4.583e^-5	0.814	INTRON NAAT1	TF binding site BDTNP1_TFBS_twi
3R	9311357	3R_9311357_SNP [dm3] 3R_13485635_SNP [dm6]	G	A	4.658e^-5	0.814	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5303303	X_5303303_SNP [dm3] X_5409270_SNP [dm6]	A	G	4.709e^-5	0.814	INTRON NAAT1	TF binding site BDTNP1_TFBS_twi
3R	9301515	3R_9301515_SNP [dm3] 3R_13475793_SNP [dm6]	A	C	4.735e^-5	0.814	INTERGENIC
3L	17574797	3L_17574797_SNP [dm3] 3L_17581697_SNP [dm6]	A	C	4.747e^-5	0.814	INTRON Eip74EF
2R	18597197	2R_18597197_SNP [dm3] 2R_22709692_SNP [dm6]	G	T	4.766e^-5	0.814	INTRON CG30275
2R	9212761	2R_9212761_SNP [dm3] 2R_13325256_SNP [dm6]	C	T	4.772e^-5	0.814	INTERGENIC
2L	5690305	2L_5690305_SNP [dm3] 2L_5690305_SNP [dm6]	G	C	4.782e^-5	0.814	UPSTREAM CR44819 DOWNSTREAM CR44820 INTERGENIC
X	19994545	X_19994545_SNP [dm3] X_20100512_SNP [dm6]	C	T	4.852e^-5	0.814	INTERGENIC	transposable element FlyBase
3R	13565054	3R_13565054_SNP [dm3] 3R_17739332_SNP [dm6]	A	G	4.855e^-5	0.814	UPSTREAM TyrRII INTRON TyrRII
2R	10457030	2R_10457030_SNP [dm3] 2R_14569525_SNP [dm6]	T	C	4.880e^-5	0.814	INTRON ttv
2R	16606065	2R_16606065_SNP [dm3] 2R_20718560_SNP [dm6]	C	A	4.898e^-5	0.814	INTRON dpr
2R	17151972	2R_17151972_SNP [dm3] 2R_21264467_SNP [dm6]	C	T	4.903e^-5	0.814	SYNONYMOUS_CODING Rgk3 DOWNSTREAM CG30391 INTRON Rgk3
X	13331988	X_13331988_SNP [dm3] X_13437955_SNP [dm6]	C	G	4.979e^-5	0.814	INTERGENIC
2L	6081251	2L_6081251_SNP [dm3] 2L_6081251_SNP [dm6]	G	A	4.988e^-5	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8634073	3L_8634073_SNP [dm3] 3L_8640973_SNP [dm6]	A	G	5.124e^-5	0.819	SYNONYMOUS_CODING Cpr66D
3L	2778472	3L_2778472_SNP [dm3] 3L_2778472_SNP [dm6]	G	A	5.146e^-5	0.819	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	8671063	3R_8671063_SNP [dm3] 3R_12845341_SNP [dm6]	T	C	5.273e^-5	0.819	INTRON beat-Va
2L	9762720	2L_9762720_SNP [dm3] 2L_9762720_SNP [dm6]	C	T	5.433e^-5	0.819	SYNONYMOUS_CODING Taf11 UPSTREAM und DOWNSTREAM zf30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	9763266	2L_9763266_SNP [dm3] 2L_9763266_SNP [dm6]	T	A	5.503e^-5	0.819	UPSTREAM und & 1 other DOWNSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	24352292	3R_24352292_SNP [dm3] 3R_28526570_SNP [dm6]	A	C	5.554e^-5	0.819	NON_SYNONYMOUS_CODING Ppn	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8677890	3R_8677890_SNP [dm3] 3R_12852168_SNP [dm6]	G	A	5.555e^-5	0.819	INTERGENIC
3R	25197332	3R_25197332_SNP [dm3] 3R_29371610_SNP [dm6]	T	C	5.659e^-5	0.819	INTERGENIC
X	13331969	X_13331969_INS [dm3] X_13437936_INS [dm6]	T	TTTACAACTCTGCCAAT...	5.661e^-5	0.819	INTERGENIC
3R	9067174	3R_9067174_SNP [dm3] 3R_13241452_SNP [dm6]	T	A	5.718e^-5	0.819	INTRON Ace
2L	18297799	2L_18297799_SNP [dm3] 2L_18297799_SNP [dm6]	C	T	5.754e^-5	0.819	DOWNSTREAM CG5790 INTERGENIC
2L	9654688	2L_9654688_SNP [dm3] 2L_9654688_SNP [dm6]	T	A	5.759e^-5	0.819	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10740570	3L_10740570_SNP [dm3] 3L_10747470_SNP [dm6]	C	G	5.917e^-5	0.819	INTERGENIC
3R	11105435	3R_11105435_SNP [dm3] 3R_15279713_SNP [dm6]	T	G	5.927e^-5	0.819	INTERGENIC
3L	14252465	3L_14252465_SNP [dm3] 3L_14259365_SNP [dm6]	G	A	5.960e^-5	0.819	INTERGENIC	TF binding site mE1_TFBS_inv
2L	567798	2L_567798_SNP [dm3] 2L_567798_SNP [dm6]	G	C	6.006e^-5	0.819	SYNONYMOUS_CODING Nle UPSTREAM CG2807	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	8682229	3R_8682229_SNP [dm3] 3R_12856507_SNP [dm6]	C	T	6.023e^-5	0.819	SYNONYMOUS_CODING CG10126
3L	1389559	3L_1389559_SNP [dm3] 3L_1389559_SNP [dm6]	C	T	6.035e^-5	0.819	INTRON Ptp61F
X	18149510	X_18149510_SNP [dm3] X_18255477_SNP [dm6]	A	G	6.051e^-5	0.819	INTERGENIC
3R	9312106	3R_9312106_SNP [dm3] 3R_13486384_SNP [dm6]	A	G	6.082e^-5	0.819	INTERGENIC
3L	10506850	3L_10506850_SNP [dm3] 3L_10513750_SNP [dm6]	G	A	6.115e^-5	0.819	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl
3R	8664891	3R_8664891_SNP [dm3] 3R_12839169_SNP [dm6]	G	A	6.130e^-5	0.819	INTERGENIC
2R	16605901	2R_16605901_SNP [dm3] 2R_20718396_SNP [dm6]	A	G	6.178e^-5	0.819	INTRON dpr
X	22332690	X_22332690_SNP [dm3] X_22930854_SNP [dm6]	A	G	6.242e^-5	0.819	INTERGENIC	transposable element FlyBase
X	9669570	X_9669570_SNP [dm3] X_9775537_SNP [dm6]	T	C	6.305e^-5	0.819	INTERGENIC
2L	9767899	2L_9767899_SNP [dm3] 2L_9767899_SNP [dm6]	T	C	6.328e^-5	0.819	SYNONYMOUS_CODING CG4017 INTRON ppk18
3R	12721780	3R_12721780_SNP [dm3] 3R_16896058_SNP [dm6]	C	T	6.355e^-5	0.819	INTRON iab-8 & 1 other	TF binding site mE1_TFBS_cad
3R	19704147	3R_19704147_SNP [dm3] 3R_23878425_SNP [dm6]	C	G	6.429e^-5	0.819	INTRON Pli
2R	4905734	2R_4905734_SNP [dm3] 2R_9018229_SNP [dm6]	A	T	6.429e^-5	0.819	DOWNSTREAM CG8170 INTRON CG13747
3L	1709306	3L_1709306_SNP [dm3] 3L_1709306_SNP [dm6]	C	G	6.454e^-5	0.819	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	18425961	3R_18425961_SNP [dm3] 3R_22600239_SNP [dm6]	A	T	6.518e^-5	0.819	SYNONYMOUS_CODING Efa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7486720	2L_7486720_SNP [dm3] 2L_7486720_SNP [dm6]	T	G	6.630e^-5	0.819	INTRON Ziz
2L	21071704	2L_21071704_SNP [dm3] 2L_21071704_SNP [dm6]	A	G	6.660e^-5	0.819	UPSTREAM CG9265 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19991329	2R_19991329_SNP [dm3] 2R_24103806_SNP [dm6]	T	C	6.708e^-5	0.819	SYNONYMOUS_CODING enok
3L	9976162	3L_9976162_SNP [dm3] 3L_9983062_SNP [dm6]	G	A	6.720e^-5	0.819	INTRON dpr6
3L	3104415	3L_3104415_SNP [dm3] 3L_3104415_SNP [dm6]	G	T	6.726e^-5	0.819	INTRON Cht7
3L	9285044	3L_9285044_SNP [dm3] 3L_9291944_SNP [dm6]	C	T	6.728e^-5	0.819	INTERGENIC
3R	8683714	3R_8683714_SNP [dm3] 3R_12857992_SNP [dm6]	A	T	6.771e^-5	0.819	UPSTREAM CG10126 INTRON CG10126
3R	16645573	3R_16645573_SNP [dm3] 3R_20819851_SNP [dm6]	A	C	6.860e^-5	0.819	UTR_3_PRIME CG17271 UPSTREAM CG17270 INTRON CG17271
3L	9419054	3L_9419054_SNP [dm3] 3L_9425954_SNP [dm6]	A	G	6.875e^-5	0.819	INTRON CG3967	TF binding site mE1_TFBS_inv
3L	21423972	3L_21423972_SNP [dm3] 3L_21430872_SNP [dm6]	G	A	6.890e^-5	0.819	NON_SYNONYMOUS_CODING CG33288 INTRON barc
3L	17783228	3L_17783228_SNP [dm3] 3L_17790128_SNP [dm6]	T	G	6.908e^-5	0.819	DOWNSTREAM CG42815 INTERGENIC
3R	9070344	3R_9070344_SNP [dm3] 3R_13244622_SNP [dm6]	A	G	6.995e^-5	0.819	INTRON Ace
2R	2764654	2R_2764654_SNP [dm3] 2R_6877149_SNP [dm6]	G	C	7.136e^-5	0.819	INTRON Spn42Da & 1 other
2L	11391614	2L_11391614_SNP [dm3] 2L_11391614_SNP [dm6]	A	T	7.160e^-5	0.819	INTRON CR43681	regulatory region REDfly_CRMs
3L	17783229	3L_17783229_SNP [dm3] 3L_17790129_SNP [dm6]	T	G	7.169e^-5	0.819	DOWNSTREAM CG42815 INTERGENIC
3R	8688580	3R_8688580_SNP [dm3] 3R_12862858_SNP [dm6]	G	T	7.185e^-5	0.819	INTERGENIC
2L	567801	2L_567801_SNP [dm3] 2L_567801_SNP [dm6]	G	A	7.189e^-5	0.819	SYNONYMOUS_CODING Nle UPSTREAM CG2807	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2660765	3L_2660765_SNP [dm3] 3L_2660765_SNP [dm6]	G	A	7.199e^-5	0.819	SPLICE_SITE_REGION CG33233 UPSTREAM CG33234 DOWNSTREAM CG33233 INTRON Fife & 1 other
2L	12500260	2L_12500260_SNP [dm3] 2L_12500260_SNP [dm6]	C	T	7.222e^-5	0.819	INTRON bun
X	13331964	X_13331964_SNP [dm3] X_13437931_SNP [dm6]	T	A	7.248e^-5	0.819	INTERGENIC
X	3523766	X_3523766_SNP [dm3] X_3629733_SNP [dm6]	A	G	7.382e^-5	0.828	INTRON AstA-R1
2L	6097411	2L_6097411_SNP [dm3] 2L_6097411_SNP [dm6]	A	G	7.468e^-5	0.828	SYNONYMOUS_CODING CG9175 DOWNSTREAM Kr-h1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10592093	3L_10592093_SNP [dm3] 3L_10598993_SNP [dm6]	T	G	7.500e^-5	0.828	INTERGENIC
3R	8554346	3R_8554346_SNP [dm3] 3R_12728624_SNP [dm6]	G	A	7.505e^-5	0.828	DOWNSTREAM CR44231 INTERGENIC
2R	13837449	2R_13837449_SNP [dm3] 2R_17949944_SNP [dm6]	C	T	7.552e^-5	0.828	INTERGENIC
2L	10553684	2L_10553684_DEL [dm3] 2L_10553684_DEL [dm6]	GCGCT	G	7.650e^-5	0.829	INTRON Trim9	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10553694	2L_10553694_DEL [dm3] 2L_10553694_DEL [dm6]	GACT	G	7.650e^-5	0.829	INTRON Trim9	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9069658	3R_9069658_SNP [dm3] 3R_13243936_SNP [dm6]	C	G	7.727e^-5	0.831	NON_SYNONYMOUS_CODING Ace
3L	2660755	3L_2660755_SNP [dm3] 3L_2660755_SNP [dm6]	G	T	7.775e^-5	0.831	UPSTREAM CG33234 DOWNSTREAM CG33233 INTRON Fife & 1 other
3R	8667323	3R_8667323_SNP [dm3] 3R_12841601_SNP [dm6]	C	A	7.821e^-5	0.831	UTR_3_PRIME beat-Va DOWNSTREAM beat-Va
2L	10554213	2L_10554213_SNP [dm3] 2L_10554213_SNP [dm6]	G	A	7.841e^-5	0.831	INTRON Trim9	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4913476	2L_4913476_SNP [dm3] 2L_4913476_SNP [dm6]	T	G	7.974e^-5	0.84	INTRON hoe1
3L	16790061	3L_16790061_SNP [dm3] 3L_16796961_SNP [dm6]	T	C	8.061e^-5	0.845	INTRON CG9674
3L	14432935	3L_14432935_SNP [dm3] 3L_14439835_SNP [dm6]	T	C	8.156e^-5	0.845	INTRON bbg
2R	9529611	2R_9529611_SNP [dm3] 2R_13642106_SNP [dm6]	C	T	8.263e^-5	0.845	INTRON fas
3L	6316414	3L_6316414_SNP [dm3] 3L_6323314_SNP [dm6]	A	G	8.293e^-5	0.845	INTERGENIC
2L	5690242	2L_5690242_SNP [dm3] 2L_5690242_SNP [dm6]	G	A	8.312e^-5	0.845	UPSTREAM CR44819 DOWNSTREAM CR44820 INTERGENIC
2L	19930201	2L_19930201_SNP [dm3] 2L_19930201_SNP [dm6]	G	A	8.352e^-5	0.845	INTRON sick
3R	12217369	3R_12217369_SNP [dm3] 3R_16391647_SNP [dm6]	T	C	8.384e^-5	0.845	INTRON ss	regulatory region REDfly_CRMs
3L	16790057	3L_16790057_SNP [dm3] 3L_16796957_SNP [dm6]	A	G	8.412e^-5	0.845	INTRON CG9674
3L	11529734	3L_11529734_SNP [dm3] 3L_11536634_SNP [dm6]	T	G	8.495e^-5	0.845	INTRON Mob2
3L	16173358	3L_16173358_SNP [dm3] 3L_16180258_SNP [dm6]	T	G	8.514e^-5	0.845	INTERGENIC	TF binding site mE1_TFBS_inv
2L	13756725	2L_13756725_SNP [dm3] 2L_13756725_SNP [dm6]	T	C	8.551e^-5	0.845	DOWNSTREAM CR44846 INTRON TM9SF4
X	10277328	X_10277328_SNP [dm3] X_10383295_SNP [dm6]	A	G	8.565e^-5	0.845	UTR_3_PRIME CG17841 DOWNSTREAM Psf3
3L	2660756	3L_2660756_SNP [dm3] 3L_2660756_SNP [dm6]	T	C	8.630e^-5	0.845	UPSTREAM CG33234 DOWNSTREAM CG33233 INTRON Fife & 1 other
2R	19991031	2R_19991031_SNP [dm3] 2R_24103508_SNP [dm6]	A	T	8.697e^-5	0.845	NON_SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9531671	2R_9531671_SNP [dm3] 2R_13644166_SNP [dm6]	A	C	8.699e^-5	0.845	INTRON fas
3L	2780284	3L_2780284_SNP [dm3] 3L_2780284_SNP [dm6]	T	G	8.746e^-5	0.846	SYNONYMOUS_CODING Atg2 UPSTREAM mRpS35	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9762479	2L_9762479_SNP [dm3] 2L_9762479_SNP [dm6]	G	C	8.806e^-5	0.847	UTR_3_PRIME Taf11 UPSTREAM und DOWNSTREAM zf30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	19990933	2R_19990933_SNP [dm3] 2R_24103410_SNP [dm6]	G	A	8.936e^-5	0.847	SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_HSA
3L	10740548	3L_10740548_SNP [dm3] 3L_10747448_SNP [dm6]	C	T	8.990e^-5	0.847	INTERGENIC
2R	19991068	2R_19991068_SNP [dm3] 2R_24103545_SNP [dm6]	A	G	9.052e^-5	0.847	SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13107224	2L_13107224_SNP [dm3] 2L_13107224_SNP [dm6]	G	A	9.054e^-5	0.847	INTRON CG5142
2L	6103336	2L_6103336_SNP [dm3] 2L_6103336_SNP [dm6]	G	A	9.154e^-5	0.847	INTRON stai
3L	2402625	3L_2402625_SNP [dm3] 3L_2402625_SNP [dm6]	G	C	9.193e^-5	0.847	NON_SYNONYMOUS_CODING CG45186 UTR_5_PRIME CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad
2L	13107247	2L_13107247_SNP [dm3] 2L_13107247_SNP [dm6]	T	A	9.287e^-5	0.847	INTRON CG5142	TF binding site mE1_TFBS_chinmo
2L	13107254	2L_13107254_SNP [dm3] 2L_13107254_SNP [dm6]	T	A	9.287e^-5	0.847	INTRON CG5142	TF binding site mE1_TFBS_chinmo
3L	5140526	3L_5140526_SNP [dm3] 3L_5147426_SNP [dm6]	C	A	9.308e^-5	0.847	INTRON Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	17896788	2R_17896788_SNP [dm3] 2R_22009283_SNP [dm6]	C	T	9.379e^-5	0.847	INTRON CG34370
2R	12834615	2R_12834615_SNP [dm3] 2R_16947110_SNP [dm6]	C	A	9.402e^-5	0.847	SYNONYMOUS_CODING CG15614 UTR_3_PRIME CG34190 DOWNSTREAM Vha16-4
3R	14885312	3R_14885312_SNP [dm3] 3R_19059590_SNP [dm6]	T	C	9.451e^-5	0.847	INTRON cdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10283526	X_10283526_SNP [dm3] X_10389493_SNP [dm6]	G	A	9.479e^-5	0.847	INTRON flw
3L	7965458	3L_7965458_SNP [dm3] 3L_7972358_SNP [dm6]	C	G	9.556e^-5	0.847	UTR_3_PRIME RNaseX25 DOWNSTREAM CG8042
2R	9535469	2R_9535469_SNP [dm3] 2R_13647964_SNP [dm6]	T	A	9.575e^-5	0.847	INTRON fas
3R	12721890	3R_12721890_SNP [dm3] 3R_16896168_SNP [dm6]	G	T	9.585e^-5	0.847	INTRON iab-8 & 1 other EXON iab-8	TF binding site mE1_TFBS_cad
2L	13107227	2L_13107227_SNP [dm3] 2L_13107227_SNP [dm6]	A	G	9.645e^-5	0.847	INTRON CG5142	TF binding site mE1_TFBS_chinmo
3R	12129935	3R_12129935_SNP [dm3] 3R_16304213_SNP [dm6]	T	A	9.759e^-5	0.847	UTR_3_PRIME gish	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	9450758	2R_9450758_SNP [dm3] 2R_13563253_SNP [dm6]	C	T	9.789e^-5	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9739881	2L_9739881_SNP [dm3] 2L_9739881_SNP [dm6]	T	G	9.811e^-5	0.847	INTRON Nckx30C
3R	23498154	3R_23498154_SNP [dm3] 3R_27672432_SNP [dm6]	T	C	9.862e^-5	0.847	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_HSA
X	3457239	X_3457239_SNP [dm3] X_3563206_SNP [dm6]	A	G	9.928e^-5	0.847	INTRON CG32791 & 1 other
X	13332009	X_13332009_SNP [dm3] X_13437976_SNP [dm6]	G	C	9.947e^-5	0.847	INTERGENIC
3R	9071797	3R_9071797_SNP [dm3] 3R_13246075_SNP [dm6]	T	C	9.980e^-5	0.847	NON_SYNONYMOUS_CODING Ace	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17808641	3R_17808641_SNP [dm3] 3R_21982919_SNP [dm6]	G	T	1.003e^-4	0.847	INTRON Eip93F
3R	8688320	3R_8688320_SNP [dm3] 3R_12862598_SNP [dm6]	T	A	1.006e^-4	0.847	INTERGENIC
2L	13755962	2L_13755962_SNP [dm3] 2L_13755962_SNP [dm6]	T	G	1.008e^-4	0.847	INTRON TM9SF4 EXON CR44846
X	10282368	X_10282368_SNP [dm3] X_10388335_SNP [dm6]	C	A	1.015e^-4	0.847	INTRON flw
2R	19108117	2R_19108117_SNP [dm3] 2R_23220594_SNP [dm6]	G	A	1.022e^-4	0.847	INTERGENIC
2R	17735858	2R_17735858_SNP [dm3] 2R_21848353_SNP [dm6]	T	A	1.027e^-4	0.847	DOWNSTREAM tRNA:CR30406 INTERGENIC	TF binding site mE1_TFBS_cad
X	3442112	X_3442112_SNP [dm3] X_3548079_SNP [dm6]	C	G	1.029e^-4	0.847	INTRON CG32791
3R	8678664	3R_8678664_SNP [dm3] 3R_12852942_SNP [dm6]	T	C	1.033e^-4	0.847	INTERGENIC
3L	12238461	3L_12238461_SNP [dm3] 3L_12245361_SNP [dm6]	C	T	1.039e^-4	0.847	DOWNSTREAM CR43991 INTRON app
2L	567795	2L_567795_SNP [dm3] 2L_567795_SNP [dm6]	T	C	1.040e^-4	0.847	SYNONYMOUS_CODING Nle UPSTREAM CG2807	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	3934385	3R_3934385_SNP [dm3] 3R_8108663_SNP [dm6]	A	G	1.046e^-4	0.847	INTRON puc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	21435585	3L_21435585_SNP [dm3] 3L_21442485_SNP [dm6]	A	G	1.070e^-4	0.847	SYNONYMOUS_CODING CG5656	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7634953	2R_7634953_SNP [dm3] 2R_11747448_SNP [dm6]	T	C	1.078e^-4	0.847	INTERGENIC
3L	9426072	3L_9426072_SNP [dm3] 3L_9432972_SNP [dm6]	A	T	1.079e^-4	0.847	DOWNSTREAM CG42526 INTRON MTF-1
X	18144771	X_18144771_SNP [dm3] X_18250738_SNP [dm6]	T	G	1.079e^-4	0.847	INTERGENIC
X	3442090	X_3442090_SNP [dm3] X_3548057_SNP [dm6]	C	A	1.086e^-4	0.847	INTRON CG32791
3R	24422128	3R_24422128_SNP [dm3] 3R_28596406_SNP [dm6]	C	A	1.091e^-4	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9764254	2L_9764254_SNP [dm3] 2L_9764254_SNP [dm6]	G	C	1.102e^-4	0.847	SYNONYMOUS_CODING und UPSTREAM Taf11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17763210	3R_17763210_INS [dm3] 3R_21937488_INS [dm6]	T	TC	1.104e^-4	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10865360	2L_10865360_SNP [dm3] 2L_10865360_SNP [dm6]	T	A	1.111e^-4	0.847	UPSTREAM CR43807 INTERGENIC
3R	24421001	3R_24421001_SNP [dm3] 3R_28595279_SNP [dm6]	G	C	1.113e^-4	0.847	DOWNSTREAM CR43440 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	9166578	3R_9166578_SNP [dm3] 3R_13340856_SNP [dm6]	A	C	1.121e^-4	0.847	SYNONYMOUS_CODING PK2-R1
3R	25654903	3R_25654903_SNP [dm3] 3R_29829181_SNP [dm6]	A	G	1.131e^-4	0.847	INTRON Atg16	enhancer mE1_CBP_Enhancers
3R	9758319	3R_9758319_SNP [dm3] 3R_13932597_SNP [dm6]	A	C	1.135e^-4	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	9168865	3R_9168865_SNP [dm3] 3R_13343143_SNP [dm6]	T	A	1.148e^-4	0.847	INTRON PK2-R1
3R	14376904	3R_14376904_SNP [dm3] 3R_18551182_SNP [dm6]	C	G	1.153e^-4	0.847	INTERGENIC
2L	9768268	2L_9768268_SNP [dm3] 2L_9768268_SNP [dm6]	G	C	1.154e^-4	0.847	SYNONYMOUS_CODING CG4017 UPSTREAM CG17633 INTRON ppk18
2R	17896824	2R_17896824_SNP [dm3] 2R_22009319_SNP [dm6]	A	G	1.159e^-4	0.847	INTRON CG34370
3R	4225046	3R_4225046_SNP [dm3] 3R_8399324_SNP [dm6]	C	G	1.164e^-4	0.847	SYNONYMOUS_CODING CG45263
3R	9167839	3R_9167839_SNP [dm3] 3R_13342117_SNP [dm6]	G	T	1.169e^-4	0.847	INTRON PK2-R1
2L	9762488	2L_9762488_SNP [dm3] 2L_9762488_SNP [dm6]	C	A	1.170e^-4	0.847	UTR_3_PRIME Taf11 UPSTREAM und DOWNSTREAM zf30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	21412785	3L_21412785_SNP [dm3] 3L_21419685_SNP [dm6]	C	A	1.171e^-4	0.847	UTR_5_PRIME rgn DOWNSTREAM barc
3R	9320558	3R_9320558_SNP [dm3] 3R_13494836_SNP [dm6]	A	T	1.173e^-4	0.847	INTERGENIC
3R	24420280	3R_24420280_SNP [dm3] 3R_28594558_SNP [dm6]	G	T	1.180e^-4	0.847	DOWNSTREAM CR43440 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	1473272	3L_1473272_SNP [dm3] 3L_1473272_SNP [dm6]	C	G	1.183e^-4	0.847	UTR_5_PRIME Ptp61F
2L	13967885	2L_13967885_SNP [dm3] 2L_13967885_SNP [dm6]	T	C	1.184e^-4	0.847	SYNONYMOUS_CODING NimB3 UPSTREAM NimB2 DOWNSTREAM NimB4
3R	9172280	3R_9172280_SNP [dm3] 3R_13346558_SNP [dm6]	G	A	1.184e^-4	0.847	INTERGENIC
3R	8670267	3R_8670267_SNP [dm3] 3R_12844545_SNP [dm6]	T	A	1.189e^-4	0.847	INTRON beat-Va
2L	19631118	2L_19631118_SNP [dm3] 2L_19631118_SNP [dm6]	G	A	1.189e^-4	0.847	INTRON Lar
3L	5140525	3L_5140525_SNP [dm3] 3L_5147425_SNP [dm6]	C	T	1.191e^-4	0.847	INTRON Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	9313828	3R_9313828_SNP [dm3] 3R_13488106_SNP [dm6]	G	A	1.193e^-4	0.847	INTERGENIC
3L	14105676	3L_14105676_SNP [dm3] 3L_14112576_SNP [dm6]	C	T	1.200e^-4	0.847	UTR_3_PRIME Sox21b
3R	9339424	3R_9339424_SNP [dm3] 3R_13513702_SNP [dm6]	C	T	1.205e^-4	0.847	INTERGENIC
3L	14185964	3L_14185964_SNP [dm3] 3L_14192864_SNP [dm6]	T	C	1.208e^-4	0.847	INTRON nuf
2R	19028440	2R_19028440_SNP [dm3] 2R_23140917_SNP [dm6]	G	A	1.208e^-4	0.847	UPSTREAM CG13544 INTERGENIC
3L	474682	3L_474682_SNP [dm3] 3L_474682_SNP [dm6]	C	T	1.209e^-4	0.847	INTRON klar
3R	7597608	3R_7597608_SNP [dm3] 3R_11771886_SNP [dm6]	A	T	1.213e^-4	0.847	UPSTREAM l_3_neo38 INTRON l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17771191	2R_17771191_DEL [dm3] 2R_21883686_DEL [dm6]	CT	C	1.218e^-4	0.847	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	10591960	3L_10591960_SNP [dm3] 3L_10598860_SNP [dm6]	T	C	1.224e^-4	0.847	INTERGENIC
3L	9416718	3L_9416718_SNP [dm3] 3L_9423618_SNP [dm6]	A	G	1.232e^-4	0.847	SYNONYMOUS_CODING aay INTRON CG3967	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6081340	2L_6081340_SNP [dm3] 2L_6081340_SNP [dm6]	G	T	1.244e^-4	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9419036	3L_9419036_SNP [dm3] 3L_9425936_SNP [dm6]	T	A	1.253e^-4	0.847	INTRON CG3967	TF binding site mE1_TFBS_inv
3L	17825136	3L_17825136_SNP [dm3] 3L_17832036_SNP [dm6]	T	C	1.258e^-4	0.847	INTRON Grd	TF binding site mE1_TFBS_cad
3L	17825409	3L_17825409_SNP [dm3] 3L_17832309_SNP [dm6]	C	A	1.258e^-4	0.847	DOWNSTREAM CG32188 INTRON Grd
3R	9298647	3R_9298647_SNP [dm3] 3R_13472925_SNP [dm6]	A	C	1.261e^-4	0.847	INTERGENIC
X	10272942	X_10272942_SNP [dm3] X_10378909_SNP [dm6]	T	C	1.261e^-4	0.847	NON_SYNONYMOUS_CODING CG32681 INTRON CG17841
2L	4229256	2L_4229256_SNP [dm3] 2L_4229256_SNP [dm6]	T	A	1.263e^-4	0.847	DOWNSTREAM RpL40 EXON CR44608
3L	21187594	3L_21187594_SNP [dm3] 3L_21194494_SNP [dm6]	A	G	1.269e^-4	0.847	DOWNSTREAM park INTERGENIC
X	4145852	X_4145852_SNP [dm3] X_4251819_SNP [dm6]	C	T	1.270e^-4	0.847	DOWNSTREAM CG15576 INTERGENIC
2L	12945127	2L_12945127_SNP [dm3] 2L_12945127_SNP [dm6]	T	C	1.277e^-4	0.847	INTERGENIC
2R	19989731	2R_19989731_SNP [dm3] 2R_24102208_SNP [dm6]	T	C	1.280e^-4	0.847	SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12568385	2L_12568385_SNP [dm3] 2L_12568385_SNP [dm6]	G	A	1.283e^-4	0.847	INTERGENIC
3L	3025744	3L_3025744_SNP [dm3] 3L_3025744_SNP [dm6]	A	G	1.291e^-4	0.847	SYNONYMOUS_CODING aly	TF binding site mE1_TFBS_h
3R	17757253	3R_17757253_SNP [dm3] 3R_21931531_SNP [dm6]	T	A	1.293e^-4	0.847	INTERGENIC
2L	10872496	2L_10872496_SNP [dm3] 2L_10872496_SNP [dm6]	T	C	1.296e^-4	0.847	DOWNSTREAM CR45454 INTERGENIC
2L	9766001	2L_9766001_SNP [dm3] 2L_9766001_SNP [dm6]	A	T	1.296e^-4	0.847	NON_SYNONYMOUS_CODING ppk18 DOWNSTREAM und
3L	9285038	3L_9285038_SNP [dm3] 3L_9291938_SNP [dm6]	G	T	1.297e^-4	0.847	INTERGENIC
3R	9163182	3R_9163182_SNP [dm3] 3R_13337460_SNP [dm6]	T	C	1.297e^-4	0.847	UPSTREAM PK2-R1 INTERGENIC
2R	6947524	2R_6947524_SNP [dm3] 2R_11060019_SNP [dm6]	T	G	1.304e^-4	0.847	INTRON luna
3R	18333502	3R_18333502_SNP [dm3] 3R_22507780_SNP [dm6]	A	G	1.315e^-4	0.847	INTRON Octbeta1R
3R	7283604	3R_7283604_SNP [dm3] 3R_11457882_SNP [dm6]	A	G	1.315e^-4	0.847	UTR_5_PRIME PGRP-LB INTRON CG17230 & 1 other
2L	4915830	2L_4915830_SNP [dm3] 2L_4915830_SNP [dm6]	G	A	1.319e^-4	0.847	UPSTREAM hoe1 INTRON hoe1
2L	8883344	2L_8883344_SNP [dm3] 2L_8883344_SNP [dm6]	C	T	1.322e^-4	0.847	INTERGENIC
3R	9307349	3R_9307349_SNP [dm3] 3R_13481627_SNP [dm6]	A	C	1.324e^-4	0.847	INTERGENIC
X	8572460	X_8572460_SNP [dm3] X_8678427_SNP [dm6]	T	C	1.341e^-4	0.853	SYNONYMOUS_CODING CG12772	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7590275	3R_7590275_SNP [dm3] 3R_11764553_SNP [dm6]	C	G	1.344e^-4	0.853	UPSTREAM Lk6 DOWNSTREAM l_3_neo38 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	14415925	3L_14415925_SNP [dm3] 3L_14422825_SNP [dm6]	C	A	1.351e^-4	0.853	INTRON bbg
2L	19627965	2L_19627965_SNP [dm3] 2L_19627965_SNP [dm6]	A	T	1.361e^-4	0.853	INTRON Lar
2L	13107249	2L_13107249_SNP [dm3] 2L_13107249_SNP [dm6]	T	A	1.364e^-4	0.853	INTRON CG5142	TF binding site mE1_TFBS_chinmo
3R	9155296	3R_9155296_SNP [dm3] 3R_13329574_SNP [dm6]	T	C	1.367e^-4	0.853	NON_SYNONYMOUS_CODING PK2-R2
X	3522288	X_3522288_SNP [dm3] X_3628255_SNP [dm6]	C	T	1.371e^-4	0.853	INTRON AstA-R1
2L	8073533	2L_8073533_SNP [dm3] 2L_8073533_SNP [dm6]	G	C	1.380e^-4	0.853	SYNONYMOUS_CODING Trf UPSTREAM MED20 DOWNSTREAM Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	12655691	X_12655691_SNP [dm3] X_12761658_SNP [dm6]	C	A	1.397e^-4	0.853	SYNONYMOUS_CODING CG12717	TF binding site BDTNP1_TFBS_dl
X	13332008	X_13332008_SNP [dm3] X_13437975_SNP [dm6]	C	T	1.400e^-4	0.853	INTERGENIC
2L	9766019	2L_9766019_SNP [dm3] 2L_9766019_SNP [dm6]	G	A	1.414e^-4	0.853	NON_SYNONYMOUS_CODING ppk18 DOWNSTREAM und
2L	12592525	2L_12592525_SNP [dm3] 2L_12592525_SNP [dm6]	T	C	1.424e^-4	0.853	INTRON nub
2R	18569018	2R_18569018_SNP [dm3] 2R_22681513_SNP [dm6]	A	G	1.427e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6264354	2L_6264354_SNP [dm3] 2L_6264354_SNP [dm6]	A	G	1.433e^-4	0.853	INTRON Ddr & 1 other	TF binding site mE1_TFBS_sens
2L	9410348	2L_9410348_SNP [dm3] 2L_9410348_SNP [dm6]	C	G	1.434e^-4	0.853	INTRON Shawl
3R	9169661	3R_9169661_SNP [dm3] 3R_13343939_SNP [dm6]	A	T	1.447e^-4	0.853	INTRON PK2-R1
3R	6670116	3R_6670116_SNP [dm3] 3R_10844394_SNP [dm6]	G	T	1.453e^-4	0.853	INTRON Cad86C
3L	14103985	3L_14103985_SNP [dm3] 3L_14110885_SNP [dm6]	A	T	1.472e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_zfh1
2L	16478401	2L_16478401_SNP [dm3] 2L_16478401_SNP [dm6]	T	G	1.478e^-4	0.853	INTRON dac	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9177791	3R_9177791_SNP [dm3] 3R_13352069_SNP [dm6]	G	T	1.480e^-4	0.853	INTERGENIC
2L	13755954	2L_13755954_SNP [dm3] 2L_13755954_SNP [dm6]	G	A	1.480e^-4	0.853	INTRON TM9SF4 EXON CR44846
3R	4692377	3R_4692377_SNP [dm3] 3R_8866655_SNP [dm6]	C	T	1.487e^-4	0.853	INTRON pyd
2L	12592512	2L_12592512_DEL [dm3] 2L_12592512_DEL [dm6]	AACTTAGTCT	A	1.497e^-4	0.853	INTRON nub
3L	14989277	3L_14989277_SNP [dm3] 3L_14996177_SNP [dm6]	T	G	1.497e^-4	0.853	SYNONYMOUS_CODING Zip71B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14235314	3L_14235314_SNP [dm3] 3L_14242214_SNP [dm6]	A	G	1.502e^-4	0.853	INTERGENIC
3R	14377237	3R_14377237_SNP [dm3] 3R_18551515_SNP [dm6]	G	A	1.503e^-4	0.853	INTERGENIC
X	16834033	X_16834033_SNP [dm3] X_16940000_SNP [dm6]	G	T	1.507e^-4	0.853	INTRON wus
X	16845161	X_16845161_SNP [dm3] X_16951128_SNP [dm6]	C	T	1.519e^-4	0.853	NON_SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	901034	3L_901034_SNP [dm3] 3L_901034_SNP [dm6]	C	T	1.520e^-4	0.853	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2R	18453715	2R_18453715_SNP [dm3] 2R_22566210_SNP [dm6]	G	T	1.520e^-4	0.853	SYNONYMOUS_CODING dnr1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19626051	2L_19626051_SNP [dm3] 2L_19626051_SNP [dm6]	G	T	1.523e^-4	0.853	INTRON Lar
3R	9294546	3R_9294546_DEL [dm3] 3R_13468824_DEL [dm6]	TC	T	1.526e^-4	0.853	INTERGENIC
2L	9768160	2L_9768160_SNP [dm3] 2L_9768160_SNP [dm6]	C	T	1.527e^-4	0.853	SYNONYMOUS_CODING CG4017 UPSTREAM CG17633 INTRON ppk18
2R	4072558	2R_4072558_SNP [dm3] 2R_8185053_SNP [dm6]	G	T	1.530e^-4	0.853	INTRON LRP1
2R	17151975	2R_17151975_SNP [dm3] 2R_21264470_SNP [dm6]	G	C	1.531e^-4	0.853	SYNONYMOUS_CODING Rgk3 DOWNSTREAM CG30391 INTRON Rgk3
2L	12362422	2L_12362422_SNP [dm3] 2L_12362422_SNP [dm6]	A	T	1.552e^-4	0.853	INTRON bru-2
2L	4916047	2L_4916047_INS [dm3] 2L_4916047_INS [dm6]	G	GC	1.553e^-4	0.853	UPSTREAM hoe1 INTRON hoe1
2L	18327908	2L_18327908_DEL [dm3] 2L_18327908_DEL [dm6]	AA	A	1.557e^-4	0.853	INTRON Fas3
X	5011636	X_5011636_SNP [dm3] X_5117603_SNP [dm6]	C	T	1.563e^-4	0.853	INTRON rg & 1 other
3R	8661905	3R_8661905_SNP [dm3] 3R_12836183_SNP [dm6]	C	T	1.565e^-4	0.853	INTERGENIC
X	19994547	X_19994547_SNP [dm3] X_20100514_SNP [dm6]	A	T	1.567e^-4	0.853	INTERGENIC	transposable element FlyBase
2L	12945181	2L_12945181_SNP [dm3] 2L_12945181_SNP [dm6]	T	A	1.571e^-4	0.853	INTERGENIC
2R	7184303	2R_7184303_SNP [dm3] 2R_11296798_SNP [dm6]	T	A	1.576e^-4	0.853	UPSTREAM CG42336 INTRON CG42336	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4397502	2L_4397502_SNP [dm3] 2L_4397502_SNP [dm6]	G	A	1.581e^-4	0.853	SYNONYMOUS_CODING l_2_k05819	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6100827	2L_6100827_SNP [dm3] 2L_6100827_SNP [dm6]	T	C	1.581e^-4	0.853	INTRON stai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7283582	3R_7283582_SNP [dm3] 3R_11457860_SNP [dm6]	A	T	1.582e^-4	0.853	UTR_5_PRIME PGRP-LB INTRON CG17230 & 1 other
2L	9770873	2L_9770873_SNP [dm3] 2L_9770873_SNP [dm6]	T	A	1.590e^-4	0.853	DOWNSTREAM ppk16 & 1 other INTRON ppk18
2R	8964179	2R_8964179_SNP [dm3] 2R_13076674_SNP [dm6]	A	G	1.603e^-4	0.853	INTRON Drl-2
3L	16325335	3L_16325335_SNP [dm3] 3L_16332235_SNP [dm6]	A	T	1.605e^-4	0.853	NON_SYNONYMOUS_CODING retinin DOWNSTREAM CG33060	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6766455	3L_6766455_SNP [dm3] 3L_6773355_SNP [dm6]	C	T	1.609e^-4	0.853	INTERGENIC
3L	9280215	3L_9280215_SNP [dm3] 3L_9287115_SNP [dm6]	G	A	1.613e^-4	0.853	UTR_3_PRIME GluRIB DOWNSTREAM GluRIB
3R	13004078	3R_13004078_SNP [dm3] 3R_17178356_SNP [dm6]	C	A	1.617e^-4	0.853	INTRON Mur89F
2R	13418242	2R_13418242_SNP [dm3] 2R_17530737_SNP [dm6]	G	T	1.619e^-4	0.853	INTRON Patronin	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	9284701	3L_9284701_SNP [dm3] 3L_9291601_SNP [dm6]	T	C	1.648e^-4	0.853	INTERGENIC
3R	12768707	3R_12768707_SNP [dm3] 3R_16942985_SNP [dm6]	C	T	1.654e^-4	0.853	INTRON Abd-B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9152535	3R_9152535_SNP [dm3] 3R_13326813_SNP [dm6]	A	G	1.656e^-4	0.853	INTERGENIC
3R	5793018	3R_5793018_SNP [dm3] 3R_9967296_SNP [dm6]	T	A	1.656e^-4	0.853	INTRON Glut4EF
X	1875496	X_1875496_SNP [dm3] X_1981463_SNP [dm6]	T	G	1.661e^-4	0.853	INTRON Hr4	TF binding site mE1_TFBS_chinmo
3R	9070832	3R_9070832_SNP [dm3] 3R_13245110_SNP [dm6]	T	A	1.666e^-4	0.853	INTRON Ace	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16642071	3R_16642071_DEL [dm3] 3R_20816349_DEL [dm6]	TTT	C	1.671e^-4	0.853	UPSTREAM Fancd2 DOWNSTREAM CG17270 INTERGENIC
3L	2777593	3L_2777593_SNP [dm3] 3L_2777593_SNP [dm6]	C	A	1.673e^-4	0.853	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12567295	X_12567295_SNP [dm3] X_12673262_SNP [dm6]	G	C	1.677e^-4	0.853	INTRON Tis11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	9179747	3R_9179747_SNP [dm3] 3R_13354025_SNP [dm6]	A	G	1.678e^-4	0.853	NON_SYNONYMOUS_CODING mthl12
3R	8678010	3R_8678010_SNP [dm3] 3R_12852288_SNP [dm6]	A	C	1.695e^-4	0.853	INTERGENIC
3L	2777501	3L_2777501_SNP [dm3] 3L_2777501_SNP [dm6]	G	A	1.697e^-4	0.853	NON_SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2777539	3L_2777539_SNP [dm3] 3L_2777539_SNP [dm6]	G	C	1.697e^-4	0.853	NON_SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10630977	2L_10630977_SNP [dm3] 2L_10630977_SNP [dm6]	T	A	1.698e^-4	0.853	NON_SYNONYMOUS_CODING CG7329
2R	18485664	2R_18485664_SNP [dm3] 2R_22598159_SNP [dm6]	A	T	1.704e^-4	0.853	INTRON CG4269	TF binding site mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3R	9708367	3R_9708367_SNP [dm3] 3R_13882645_SNP [dm6]	A	G	1.705e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18322370	3R_18322370_SNP [dm3] 3R_22496648_SNP [dm6]	A	G	1.709e^-4	0.853	UPSTREAM Octbeta1R INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8692375	3R_8692375_SNP [dm3] 3R_12866653_SNP [dm6]	C	G	1.712e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_ftz_f1
3R	9071355	3R_9071355_SNP [dm3] 3R_13245633_SNP [dm6]	A	C	1.714e^-4	0.853	INTRON Ace
X	13347166	X_13347166_SNP [dm3] X_13453133_SNP [dm6]	G	A	1.716e^-4	0.853	INTRON Neto
2R	10444657	2R_10444657_SNP [dm3] 2R_14557152_SNP [dm6]	T	G	1.716e^-4	0.853	INTRON ttv	TF binding site BDTNP1_TFBS_sna
3R	21390730	3R_21390730_SNP [dm3] 3R_25565008_SNP [dm6]	A	G	1.716e^-4	0.853	INTRON msi
3L	2541743	3L_2541743_SNP [dm3] 3L_2541743_SNP [dm6]	G	A	1.717e^-4	0.853	INTRON Spn
3R	8667317	3R_8667317_SNP [dm3] 3R_12841595_SNP [dm6]	C	A	1.718e^-4	0.853	UTR_3_PRIME beat-Va DOWNSTREAM beat-Va
X	10280096	X_10280096_SNP [dm3] X_10386063_SNP [dm6]	C	T	1.725e^-4	0.853	UTR_5_PRIME flw UPSTREAM Psf3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5628413	2L_5628413_SNP [dm3] 2L_5628413_SNP [dm6]	T	A	1.727e^-4	0.853	INTRON CG31646	TF binding site BDTNP1_TFBS_twi
3R	9314671	3R_9314671_INS [dm3] 3R_13488949_INS [dm6]	T	TGTAT	1.728e^-4	0.853	INTERGENIC
3L	1375695	3L_1375695_SNP [dm3] 3L_1375695_SNP [dm6]	C	T	1.730e^-4	0.853	INTRON Ptp61F & 1 other
2R	2777074	2R_2777074_SNP [dm3] 2R_6889569_SNP [dm6]	A	C	1.730e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_cad
3L	15358943	3L_15358943_SNP [dm3] 3L_15365843_SNP [dm6]	G	C	1.749e^-4	0.853	INTERGENIC
3R	19889215	3R_19889215_SNP [dm3] 3R_24063493_SNP [dm6]	C	T	1.752e^-4	0.853	UTR_3_PRIME 4EHP DOWNSTREAM SMC1 & 1 other
2R	4381318	2R_4381318_SNP [dm3] 2R_8493813_SNP [dm6]	C	T	1.752e^-4	0.853	SYNONYMOUS_CODING mtt INTRON mtt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16313092	3L_16313092_SNP [dm3] 3L_16319992_SNP [dm6]	G	C	1.755e^-4	0.853	UPSTREAM CG13041 & 1 other DOWNSTREAM CR45663 & 1 other INTRON CG13060
2R	12504984	2R_12504984_SNP [dm3] 2R_16617479_SNP [dm6]	G	T	1.762e^-4	0.853	UPSTREAM CG5065 INTRON CG5065
2L	5676774	2L_5676774_SNP [dm3] 2L_5676774_SNP [dm6]	G	A	1.765e^-4	0.853	INTERGENIC
2R	5106802	2R_5106802_SNP [dm3] 2R_9219297_SNP [dm6]	T	G	1.770e^-4	0.853	INTERGENIC
X	14687710	X_14687710_INS [dm3] X_14793677_INS [dm6]	G	GATG	1.770e^-4	0.853	CODON_INSERTION rut	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3588858	2L_3588858_SNP [dm3] 2L_3588858_SNP [dm6]	G	T	1.778e^-4	0.853	EXON CR43823	TF binding site mE1_TFBS_HSA
3R	9294536	3R_9294536_SNP [dm3] 3R_13468814_SNP [dm6]	G	A	1.785e^-4	0.853	INTERGENIC
3L	2778433	3L_2778433_SNP [dm3] 3L_2778433_SNP [dm6]	A	G	1.787e^-4	0.853	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14929144	2L_14929144_SNP [dm3] 2L_14929144_SNP [dm6]	T	C	1.788e^-4	0.853	SYNONYMOUS_CODING CG3491 INTRON CG42313	TF binding site mE1_TFBS_chinmo
3R	17760265	3R_17760265_SNP [dm3] 3R_21934543_SNP [dm6]	T	C	1.790e^-4	0.853	INTERGENIC
3R	12457693	3R_12457693_SNP [dm3] 3R_16631971_SNP [dm6]	C	T	1.793e^-4	0.853	SYNONYMOUS_CODING Fas1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12945318	2L_12945318_SNP [dm3] 2L_12945318_SNP [dm6]	T	A	1.822e^-4	0.853	INTERGENIC
2R	4750042	2R_4750042_SNP [dm3] 2R_8862537_SNP [dm6]	G	T	1.822e^-4	0.853	UPSTREAM RyR INTRON RyR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9654992	2L_9654992_SNP [dm3] 2L_9654992_SNP [dm6]	G	T	1.824e^-4	0.853	NON_SYNONYMOUS_CODING Apoltp
2L	10048253	2L_10048253_SNP [dm3] 2L_10048253_SNP [dm6]	A	G	1.826e^-4	0.853	INTERGENIC
2L	2023306	2L_2023306_SNP [dm3] 2L_2023306_SNP [dm6]	C	T	1.831e^-4	0.853	UPSTREAM CG4238 INTRON CG4238
2L	4915847	2L_4915847_SNP [dm3] 2L_4915847_SNP [dm6]	A	T	1.831e^-4	0.853	UPSTREAM hoe1 INTRON hoe1
2L	13486811	2L_13486811_SNP [dm3] 2L_13486811_SNP [dm6]	T	A	1.840e^-4	0.853	INTRON CG42784
2L	6517041	2L_6517041_SNP [dm3] 2L_6517041_SNP [dm6]	C	G	1.845e^-4	0.853	INTRON CG31637
X	9172578	X_9172578_SNP [dm3] X_9278545_SNP [dm6]	C	T	1.847e^-4	0.853	SYNONYMOUS_CODING c11.1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17688470	3L_17688470_INS [dm3] 3L_17695370_INS [dm6]	T	TGGCTAT	1.848e^-4	0.853	INTRON Ccn
3R	11539909	3R_11539909_SNP [dm3] 3R_15714187_SNP [dm6]	G	T	1.850e^-4	0.853	INTERGENIC
2L	18284762	2L_18284762_SNP [dm3] 2L_18284762_SNP [dm6]	C	T	1.862e^-4	0.853	DOWNSTREAM CG31787 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5566662	X_5566662_SNP [dm3] X_5672629_SNP [dm6]	G	T	1.864e^-4	0.853	UPSTREAM RpL35 & 1 other INTRON RpL35	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	4507479	2R_4507479_SNP [dm3] 2R_8619974_SNP [dm6]	C	A	1.865e^-4	0.853	UTR_3_PRIME Cirl INTRON Cirl	TF binding site BDTNP1_TFBS_z
3R	9915395	3R_9915395_SNP [dm3] 3R_14089673_SNP [dm6]	A	T	1.867e^-4	0.853	INTRON Npc2b
3R	24420995	3R_24420995_SNP [dm3] 3R_28595273_SNP [dm6]	G	T	1.867e^-4	0.853	DOWNSTREAM CR43440 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	6157287	3R_6157287_SNP [dm3] 3R_10331565_SNP [dm6]	C	T	1.868e^-4	0.853	UPSTREAM CG12818 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
3L	13096359	3L_13096359_SNP [dm3] 3L_13103259_SNP [dm6]	A	T	1.875e^-4	0.853	INTERGENIC
3R	9295979	3R_9295979_SNP [dm3] 3R_13470257_SNP [dm6]	A	G	1.880e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_cad
3R	4113031	3R_4113031_SNP [dm3] 3R_8287309_SNP [dm6]	C	A	1.882e^-4	0.853	UPSTREAM CG11671 EXON CR44318	TF binding site BDTNP1_TFBS_dl
3R	12733648	3R_12733648_SNP [dm3] 3R_16907926_SNP [dm6]	T	C	1.889e^-4	0.853	INTRON iab-8
3L	14388255	3L_14388255_SNP [dm3] 3L_14395155_SNP [dm6]	C	T	1.889e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9171560	3R_9171560_SNP [dm3] 3R_13345838_SNP [dm6]	C	A	1.895e^-4	0.853	DOWNSTREAM PK2-R1 INTERGENIC
2R	4913258	2R_4913258_SNP [dm3] 2R_9025753_SNP [dm6]	A	G	1.898e^-4	0.853	INTRON CG8170	TF binding site mE1_TFBS_chinmo
3L	416926	3L_416926_SNP [dm3] 3L_416926_SNP [dm6]	G	A	1.906e^-4	0.853	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9294541	3R_9294541_SNP [dm3] 3R_13468819_SNP [dm6]	G	A	1.912e^-4	0.853	INTERGENIC
3L	1681936	3L_1681936_SNP [dm3] 3L_1681936_SNP [dm6]	A	C	1.919e^-4	0.853	INTRON CG7991
3R	9088287	3R_9088287_SNP [dm3] 3R_13262565_SNP [dm6]	G	A	1.927e^-4	0.853	DOWNSTREAM Ravus & 1 other INTERGENIC
X	8814243	X_8814243_SNP [dm3] X_8920210_SNP [dm6]	A	G	1.928e^-4	0.853	INTRON rdgA & 1 other
2L	4916249	2L_4916249_SNP [dm3] 2L_4916249_SNP [dm6]	G	C	1.928e^-4	0.853	UPSTREAM hoe1 INTRON hoe1
2R	19099273	2R_19099273_SNP [dm3] 2R_23211750_SNP [dm6]	G	C	1.933e^-4	0.853	UPSTREAM LS2 INTERGENIC
2L	3419068	2L_3419068_SNP [dm3] 2L_3419068_SNP [dm6]	T	C	1.945e^-4	0.853	DOWNSTREAM CG31952 INTRON pgant2
X	3071386	X_3071386_INS [dm3] X_3177353_INS [dm6]	A	AA	1.950e^-4	0.853	INTRON dnc
2L	9780790	2L_9780790_DEL [dm3] 2L_9780790_DEL [dm6]	GTGGCCGTTT	G	1.954e^-4	0.853	INTERGENIC
3R	20684627	3R_20684627_SNP [dm3] 3R_24858905_SNP [dm6]	C	A	1.967e^-4	0.853	SYNONYMOUS_CODING ppk22 DOWNSTREAM ppk22 & 1 other
3L	3681313	3L_3681313_SNP [dm3] 3L_3681313_SNP [dm6]	C	G	1.968e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_cad
2L	5086432	2L_5086432_SNP [dm3] 2L_5086432_SNP [dm6]	A	C	1.974e^-4	0.853	INTRON pgant5
3L	15115568	3L_15115568_SNP [dm3] 3L_15122468_SNP [dm6]	T	C	1.977e^-4	0.853	DOWNSTREAM CG32847 INTRON Cep135 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	9418939	3L_9418939_SNP [dm3] 3L_9425839_SNP [dm6]	A	T	1.983e^-4	0.853	INTRON CG3967	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11391695	2L_11391695_SNP [dm3] 2L_11391695_SNP [dm6]	A	C	1.997e^-4	0.853	INTRON CR43681	regulatory region REDfly_CRMs
3L	6827969	3L_6827969_INS [dm3] 3L_6834869_INS [dm6]	T	TCCCCATTCGTATGCCAACT...	1.998e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17557502	2R_17557502_INS [dm3] 2R_21669997_INS [dm6]	A	ATA	2.004e^-4	0.853	UPSTREAM NC2alpha & 4 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14388947	3L_14388947_SNP [dm3] 3L_14395847_SNP [dm6]	G	T	2.004e^-4	0.853	INTERGENIC
3R	16646923	3R_16646923_SNP [dm3] 3R_20821201_SNP [dm6]	G	T	2.006e^-4	0.853	NON_SYNONYMOUS_CODING CG17271 UPSTREAM RpS20	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	7285343	3R_7285343_SNP [dm3] 3R_11459621_SNP [dm6]	A	C	2.016e^-4	0.853	INTRON CG17230 & 1 other
3L	5844269	3L_5844269_SNP [dm3] 3L_5851169_SNP [dm6]	G	A	2.020e^-4	0.853	INTERGENIC
3L	6316404	3L_6316404_SNP [dm3] 3L_6323304_SNP [dm6]	G	T	2.021e^-4	0.853	INTERGENIC
2L	2531384	2L_2531384_SNP [dm3] 2L_2531384_SNP [dm6]	A	T	2.041e^-4	0.853	INTERGENIC
3R	13783503	3R_13783503_SNP [dm3] 3R_17957781_SNP [dm6]	T	A	2.049e^-4	0.853	INTRON cpo
3R	8691139	3R_8691139_SNP [dm3] 3R_12865417_SNP [dm6]	C	A	2.050e^-4	0.853	INTERGENIC
3R	8663526	3R_8663526_SNP [dm3] 3R_12837804_SNP [dm6]	A	C	2.051e^-4	0.853	INTERGENIC
3R	9068834	3R_9068834_DEL [dm3] 3R_13243112_DEL [dm6]	GG	G	2.059e^-4	0.853	INTRON Ace
3R	8684198	3R_8684198_DEL [dm3] 3R_12858476_DEL [dm6]	GTTCAAAGTTAAACAAG...	G	2.080e^-4	0.853	UPSTREAM CG10126 INTRON CG10126
2L	11813906	2L_11813906_SNP [dm3] 2L_11813906_SNP [dm6]	T	G	2.081e^-4	0.853	UPSTREAM CycY DOWNSTREAM Pde1c INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	16559585	X_16559585_SNP [dm3] X_16665552_SNP [dm6]	C	T	2.082e^-4	0.853	INTRON r
3L	16884873	3L_16884873_SNP [dm3] 3L_16891773_SNP [dm6]	A	G	2.086e^-4	0.853	INTRON Lmpt	TF binding site BDTNP1_TFBS_dl
3R	7325400	3R_7325400_SNP [dm3] 3R_11499678_SNP [dm6]	C	G	2.087e^-4	0.853	UPSTREAM dpr5 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1375680	3L_1375680_SNP [dm3] 3L_1375680_SNP [dm6]	A	G	2.088e^-4	0.853	INTRON Ptp61F & 1 other
2L	12184924	2L_12184924_SNP [dm3] 2L_12184924_SNP [dm6]	A	G	2.089e^-4	0.853	INTRON aret
2R	14147741	2R_14147741_SNP [dm3] 2R_18260236_SNP [dm6]	C	T	2.097e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	19983134	2R_19983134_SNP [dm3] 2R_24095611_SNP [dm6]	A	C	2.097e^-4	0.853	NON_SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	4852516	2R_4852516_SNP [dm3] 2R_8965011_SNP [dm6]	A	T	2.101e^-4	0.853	INTRON CG8216
2R	17256691	2R_17256691_SNP [dm3] 2R_21369186_SNP [dm6]	T	C	2.106e^-4	0.853	INTRON cv-2	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12655643	X_12655643_SNP [dm3] X_12761610_SNP [dm6]	C	T	2.107e^-4	0.853	SYNONYMOUS_CODING CG12717 UPSTREAM ade5	TF binding site BDTNP1_TFBS_dl
2L	4459891	2L_4459891_SNP [dm3] 2L_4459891_SNP [dm6]	T	C	2.114e^-4	0.853	UTR_5_PRIME CG15435 UPSTREAM mRpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
X	8814276	X_8814276_SNP [dm3] X_8920243_SNP [dm6]	A	T	2.115e^-4	0.853	INTRON rdgA & 1 other
2L	9766020	2L_9766020_SNP [dm3] 2L_9766020_SNP [dm6]	T	C	2.115e^-4	0.853	NON_SYNONYMOUS_CODING ppk18 DOWNSTREAM und
3R	12733845	3R_12733845_SNP [dm3] 3R_16908123_SNP [dm6]	C	G	2.123e^-4	0.853	INTRON iab-8
2L	4397733	2L_4397733_SNP [dm3] 2L_4397733_SNP [dm6]	A	C	2.129e^-4	0.853	SYNONYMOUS_CODING l_2_k05819
2L	12945092	2L_12945092_SNP [dm3] 2L_12945092_SNP [dm6]	A	G	2.139e^-4	0.853	INTERGENIC
3L	17170865	3L_17170865_SNP [dm3] 3L_17177765_SNP [dm6]	T	C	2.140e^-4	0.853	INTRON Rbp6
2L	12605690	2L_12605690_SNP [dm3] 2L_12605690_SNP [dm6]	C	T	2.152e^-4	0.853	INTRON nub
3L	14106715	3L_14106715_SNP [dm3] 3L_14113615_SNP [dm6]	G	A	2.154e^-4	0.853	INTRON Sox21b
3L	9416713	3L_9416713_SNP [dm3] 3L_9423613_SNP [dm6]	A	G	2.163e^-4	0.853	NON_SYNONYMOUS_CODING aay INTRON CG3967	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	2727063	3R_2727063_SNP [dm3] 3R_6901341_SNP [dm6]	G	A	2.163e^-4	0.853	INTRON Antp
2L	6394270	2L_6394270_SNP [dm3] 2L_6394270_SNP [dm6]	C	A	2.171e^-4	0.853	INTRON CG42368
3L	9365295	3L_9365295_SNP [dm3] 3L_9372195_SNP [dm6]	C	T	2.181e^-4	0.853	SYNONYMOUS_CODING Hsp67Bc UPSTREAM Fdxh & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6100912	2L_6100912_SNP [dm3] 2L_6100912_SNP [dm6]	C	T	2.184e^-4	0.853	INTRON stai	TF binding site BDTNP1_TFBS_dl
3L	5140297	3L_5140297_SNP [dm3] 3L_5147197_SNP [dm6]	T	C	2.193e^-4	0.853	SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	14415857	3L_14415857_DEL [dm3] 3L_14422757_DEL [dm6]	AAGGTAATGTCGTGGAAA...	A	2.197e^-4	0.853	INTRON bbg
2R	9429166	2R_9429166_SNP [dm3] 2R_13541661_SNP [dm6]	C	T	2.200e^-4	0.853	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	9134214	3L_9134214_SNP [dm3] 3L_9141114_SNP [dm6]	A	G	2.204e^-4	0.853	SYNONYMOUS_CODING nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8915769	2R_8915769_SNP [dm3] 2R_13028264_SNP [dm6]	T	C	2.210e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16255396	2L_16255396_SNP [dm3] 2L_16255396_SNP [dm6]	C	T	2.210e^-4	0.853	INTRON PRL-1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	18582657	3R_18582657_SNP [dm3] 3R_22756935_SNP [dm6]	C	G	2.212e^-4	0.853	INTRON Usp12-46 & 1 other
3L	14264930	3L_14264930_SNP [dm3] 3L_14271830_SNP [dm6]	T	C	2.214e^-4	0.853	INTERGENIC
3L	10740549	3L_10740549_SNP [dm3] 3L_10747449_SNP [dm6]	G	A	2.215e^-4	0.853	INTERGENIC
3L	21504303	3L_21504303_SNP [dm3] 3L_21511203_SNP [dm6]	T	C	2.215e^-4	0.853	SYNONYMOUS_CODING M6 DOWNSTREAM SAK
3R	20684637	3R_20684637_SNP [dm3] 3R_24858915_SNP [dm6]	C	T	2.216e^-4	0.853	NON_SYNONYMOUS_CODING ppk22 DOWNSTREAM ppk22 & 1 other
3R	21651911	3R_21651911_SNP [dm3] 3R_25826189_SNP [dm6]	G	A	2.224e^-4	0.853	UPSTREAM CR44949 INTERGENIC
3R	13761149	3R_13761149_INS [dm3] 3R_17935427_INS [dm6]	G	GAGG	2.230e^-4	0.853	INTRON cpo
3L	2780281	3L_2780281_SNP [dm3] 3L_2780281_SNP [dm6]	C	T	2.230e^-4	0.853	SYNONYMOUS_CODING Atg2 UPSTREAM mRpS35	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17735835	2R_17735835_SNP [dm3] 2R_21848330_SNP [dm6]	G	A	2.232e^-4	0.853	DOWNSTREAM tRNA:CR30406 INTERGENIC	TF binding site mE1_TFBS_cad
2L	6567675	2L_6567675_SNP [dm3] 2L_6567675_SNP [dm6]	C	T	2.233e^-4	0.853	DOWNSTREAM CG11319 INTERGENIC
3R	2384588	3R_2384588_SNP [dm3] 3R_6558866_SNP [dm6]	T	C	2.234e^-4	0.853	NON_SYNONYMOUS_CODING CG1137 INTRON dpr11
2L	4209851	2L_4209851_SNP [dm3] 2L_4209851_SNP [dm6]	G	A	2.234e^-4	0.853	INTRON ft	TF binding site mE1_TFBS_inv
3L	14259917	3L_14259917_SNP [dm3] 3L_14266817_SNP [dm6]	G	T	2.236e^-4	0.853	INTERGENIC
3R	23477229	3R_23477229_SNP [dm3] 3R_27651507_SNP [dm6]	T	G	2.237e^-4	0.853	UTR_3_PRIME tau UPSTREAM tau INTRON tau
2L	9780833	2L_9780833_SNP [dm3] 2L_9780833_SNP [dm6]	C	A	2.237e^-4	0.853	INTERGENIC
3R	13312933	3R_13312933_SNP [dm3] 3R_17487211_SNP [dm6]	C	T	2.237e^-4	0.853	INTRON Dscam3
2L	11461737	2L_11461737_SNP [dm3] 2L_11461737_SNP [dm6]	T	C	2.243e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5690270	2L_5690270_SNP [dm3] 2L_5690270_SNP [dm6]	G	T	2.249e^-4	0.853	UPSTREAM CR44819 DOWNSTREAM CR44820 INTERGENIC
X	10273313	X_10273313_SNP [dm3] X_10379280_SNP [dm6]	A	G	2.250e^-4	0.853	SYNONYMOUS_CODING CG32681 INTRON CG17841
2R	16605429	2R_16605429_SNP [dm3] 2R_20717924_SNP [dm6]	G	A	2.260e^-4	0.853	INTRON dpr
2L	4916358	2L_4916358_SNP [dm3] 2L_4916358_SNP [dm6]	A	G	2.264e^-4	0.853	UPSTREAM hoe1 INTRON hoe1
2R	5836017	2R_5836017_SNP [dm3] 2R_9948512_SNP [dm6]	G	A	2.266e^-4	0.853	INTRON Mef2
3L	16981365	3L_16981365_SNP [dm3] 3L_16988265_SNP [dm6]	C	A	2.269e^-4	0.853	INTRON Exn
2L	13107264	2L_13107264_SNP [dm3] 2L_13107264_SNP [dm6]	A	T	2.277e^-4	0.853	INTRON CG5142	TF binding site mE1_TFBS_chinmo
2R	9531819	2R_9531819_SNP [dm3] 2R_13644314_SNP [dm6]	G	A	2.279e^-4	0.853	INTRON fas
3R	21590671	3R_21590671_SNP [dm3] 3R_25764949_SNP [dm6]	G	A	2.284e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_inv
3R	10912946	3R_10912946_SNP [dm3] 3R_15087224_SNP [dm6]	G	T	2.284e^-4	0.853	INTRON CG6966
3L	14235287	3L_14235287_SNP [dm3] 3L_14242187_SNP [dm6]	T	C	2.284e^-4	0.853	INTERGENIC
2L	3870013	2L_3870013_SNP [dm3] 2L_3870013_SNP [dm6]	C	T	2.289e^-4	0.853	NON_SYNONYMOUS_CODING Cep97 UPSTREAM Cep97
3L	12520167	3L_12520167_SNP [dm3] 3L_12527067_SNP [dm6]	A	T	2.298e^-4	0.853	UPSTREAM eIF-2beta DOWNSTREAM nst INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24369000	3R_24369000_SNP [dm3] 3R_28543278_SNP [dm6]	A	G	2.305e^-4	0.853	SYNONYMOUS_CODING CG12413	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24420220	3R_24420220_SNP [dm3] 3R_28594498_SNP [dm6]	A	G	2.306e^-4	0.853	DOWNSTREAM CR43440 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	3823804	3L_3823804_SNP [dm3] 3L_3823804_SNP [dm6]	C	T	2.309e^-4	0.853	INTRON enc	TF binding site BDTNP1_TFBS_dl
2L	10059179	2L_10059179_SNP [dm3] 2L_10059179_SNP [dm6]	C	T	2.310e^-4	0.853	SYNONYMOUS_CODING Pen	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	16302689	3L_16302689_SNP [dm3] 3L_16309589_SNP [dm6]	C	G	2.311e^-4	0.853	INTRON CR32160
3R	14004796	3R_14004796_SNP [dm3] 3R_18179074_SNP [dm6]	G	A	2.315e^-4	0.853	UTR_3_PRIME PP2A-B' DOWNSTREAM cdm & 1 other
2L	6101048	2L_6101048_SNP [dm3] 2L_6101048_SNP [dm6]	A	C	2.320e^-4	0.853	INTRON stai	TF binding site BDTNP1_TFBS_dl
3L	3773370	3L_3773370_SNP [dm3] 3L_3773370_SNP [dm6]	A	T	2.330e^-4	0.853	INTRON CG32264
2L	9738980	2L_9738980_INS [dm3] 2L_9738980_INS [dm6]	C	CC	2.341e^-4	0.853	INTRON Nckx30C
3R	13194725	3R_13194725_SNP [dm3] 3R_17369003_SNP [dm6]	A	T	2.355e^-4	0.853	INTERGENIC
3R	21333326	3R_21333326_SNP [dm3] 3R_25507604_SNP [dm6]	T	C	2.359e^-4	0.853	NON_SYNONYMOUS_CODING CG5111	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	14388249	3L_14388249_DEL [dm3] 3L_14395149_DEL [dm6]	CAGC	A	2.367e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9070947	3R_9070947_SNP [dm3] 3R_13245225_SNP [dm6]	T	C	2.369e^-4	0.853	INTRON Ace	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17441516	2R_17441516_SNP [dm3] 2R_21554011_SNP [dm6]	C	T	2.377e^-4	0.853	INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23995001	3R_23995001_SNP [dm3] 3R_28169279_SNP [dm6]	G	A	2.380e^-4	0.853	INTRON CG34354
3R	2595413	3R_2595413_SNP [dm3] 3R_6769691_SNP [dm6]	T	A	2.380e^-4	0.853	INTRON CR42721	TF binding site mE1_TFBS_cad
2R	18091354	2R_18091354_SNP [dm3] 2R_22203849_SNP [dm6]	A	G	2.382e^-4	0.853	SYNONYMOUS_CODING CG3292 DOWNSTREAM CR45376
3L	6456159	3L_6456159_SNP [dm3] 3L_6463059_SNP [dm6]	G	C	2.383e^-4	0.853	INTRON CG42747	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19557613	3R_19557613_SNP [dm3] 3R_23731891_SNP [dm6]	G	A	2.394e^-4	0.853	SYNONYMOUS_CODING Rpn9 DOWNSTREAM CG10365	TF binding site mE1_TFBS_sens
2L	15150500	2L_15150500_SNP [dm3] 2L_15150500_SNP [dm6]	A	G	2.395e^-4	0.853	INTERGENIC
X	3523317	X_3523317_SNP [dm3] X_3629284_SNP [dm6]	C	T	2.404e^-4	0.853	INTRON AstA-R1
2L	4915858	2L_4915858_SNP [dm3] 2L_4915858_SNP [dm6]	T	A	2.405e^-4	0.853	UPSTREAM hoe1 INTRON hoe1
2L	4794157	2L_4794157_SNP [dm3] 2L_4794157_SNP [dm6]	A	C	2.420e^-4	0.853	UPSTREAM CG3294 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19990694	2R_19990694_SNP [dm3] 2R_24103171_SNP [dm6]	A	C	2.425e^-4	0.853	NON_SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_cad
3L	15115569	3L_15115569_SNP [dm3] 3L_15122469_SNP [dm6]	T	A	2.441e^-4	0.853	DOWNSTREAM CG32847 INTRON Cep135 & 1 other	TF binding site BDTNP1_TFBS_twi
X	10393957	X_10393957_SNP [dm3] X_10499924_SNP [dm6]	G	A	2.442e^-4	0.853	INTRON spri
3R	7283632	3R_7283632_SNP [dm3] 3R_11457910_SNP [dm6]	T	C	2.449e^-4	0.853	UTR_5_PRIME PGRP-LB INTRON CG17230 & 1 other
X	2402542	X_2402542_SNP [dm3] X_2508509_SNP [dm6]	C	T	2.449e^-4	0.853	INTRON trol
2R	9531332	2R_9531332_SNP [dm3] 2R_13643827_SNP [dm6]	A	G	2.450e^-4	0.853	SPLICE_SITE_REGION fas INTRON fas
X	12655640	X_12655640_SNP [dm3] X_12761607_SNP [dm6]	T	C	2.455e^-4	0.853	SYNONYMOUS_CODING CG12717 UPSTREAM ade5	TF binding site BDTNP1_TFBS_dl
2L	3440659	2L_3440659_SNP [dm3] 2L_3440659_SNP [dm6]	C	T	2.464e^-4	0.853	INTERGENIC
3R	20684642	3R_20684642_SNP [dm3] 3R_24858920_SNP [dm6]	G	A	2.468e^-4	0.853	SYNONYMOUS_CODING ppk22 DOWNSTREAM ppk22 & 1 other
3L	16314174	3L_16314174_SNP [dm3] 3L_16321074_SNP [dm6]	C	G	2.469e^-4	0.853	NON_SYNONYMOUS_CODING CG42718 DOWNSTREAM CG13060
2R	5107065	2R_5107065_SNP [dm3] 2R_9219560_SNP [dm6]	T	A	2.478e^-4	0.853	INTERGENIC
3R	23477228	3R_23477228_SNP [dm3] 3R_27651506_SNP [dm6]	G	A	2.481e^-4	0.853	UTR_3_PRIME tau UPSTREAM tau INTRON tau
2R	5107003	2R_5107003_SNP [dm3] 2R_9219498_SNP [dm6]	A	G	2.485e^-4	0.853	INTERGENIC
X	17223713	X_17223713_SNP [dm3] X_17329680_SNP [dm6]	A	G	2.488e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3L	7226646	3L_7226646_SNP [dm3] 3L_7233546_SNP [dm6]	G	A	2.491e^-4	0.853	UPSTREAM CG14826 INTERGENIC
3R	9313927	3R_9313927_SNP [dm3] 3R_13488205_SNP [dm6]	G	C	2.493e^-4	0.853	INTERGENIC
3L	14259933	3L_14259933_SNP [dm3] 3L_14266833_SNP [dm6]	C	T	2.499e^-4	0.853	INTERGENIC
2L	19930302	2L_19930302_SNP [dm3] 2L_19930302_SNP [dm6]	C	G	2.502e^-4	0.853	INTRON sick
3R	9171568	3R_9171568_SNP [dm3] 3R_13345846_SNP [dm6]	G	A	2.509e^-4	0.853	DOWNSTREAM PK2-R1 INTERGENIC
2R	15392623	2R_15392623_SNP [dm3] 2R_19505118_SNP [dm6]	C	A	2.520e^-4	0.853	UPSTREAM CR44472 DOWNSTREAM CG11007 EXON CR44472	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9297014	3R_9297014_SNP [dm3] 3R_13471292_SNP [dm6]	A	T	2.525e^-4	0.853	INTERGENIC
3L	14109233	3L_14109233_DEL [dm3] 3L_14116133_DEL [dm6]	TT	T	2.525e^-4	0.853	INTRON Sox21b
2R	18933733	2R_18933733_SNP [dm3] 2R_23046210_SNP [dm6]	G	T	2.529e^-4	0.853	UTR_5_PRIME twi UPSTREAM twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19672849	2R_19672849_SNP [dm3] 2R_23785326_SNP [dm6]	T	G	2.531e^-4	0.853	INTRON CG9850
2L	16255397	2L_16255397_SNP [dm3] 2L_16255397_SNP [dm6]	A	C	2.535e^-4	0.853	INTRON PRL-1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	13194627	3R_13194627_SNP [dm3] 3R_17368905_SNP [dm6]	C	T	2.549e^-4	0.853	INTERGENIC
3L	1009116	3L_1009116_SNP [dm3] 3L_1009116_SNP [dm6]	C	T	2.559e^-4	0.853	INTRON trio
2L	4156678	2L_4156678_SNP [dm3] 2L_4156678_SNP [dm6]	C	T	2.566e^-4	0.853	INTERGENIC
2R	9450273	2R_9450273_SNP [dm3] 2R_13562768_SNP [dm6]	G	A	2.574e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	13755960	2L_13755960_SNP [dm3] 2L_13755960_SNP [dm6]	G	T	2.590e^-4	0.853	INTRON TM9SF4 EXON CR44846
3R	9395993	3R_9395993_SNP [dm3] 3R_13570271_SNP [dm6]	A	T	2.591e^-4	0.853	INTERGENIC
2L	19625358	2L_19625358_SNP [dm3] 2L_19625358_SNP [dm6]	T	C	2.592e^-4	0.853	INTRON Lar
3L	9419073	3L_9419073_SNP [dm3] 3L_9425973_SNP [dm6]	C	T	2.595e^-4	0.853	INTRON CG3967	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	9418852	3L_9418852_SNP [dm3] 3L_9425752_SNP [dm6]	T	C	2.601e^-4	0.853	DOWNSTREAM aay INTRON CG3967	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3681390	3L_3681390_SNP [dm3] 3L_3681390_SNP [dm6]	A	C	2.608e^-4	0.853	INTERGENIC
3L	3681369	3L_3681369_SNP [dm3] 3L_3681369_SNP [dm6]	C	T	2.609e^-4	0.853	INTERGENIC
2L	4156670	2L_4156670_SNP [dm3] 2L_4156670_SNP [dm6]	A	T	2.617e^-4	0.853	INTERGENIC
2L	4156672	2L_4156672_SNP [dm3] 2L_4156672_SNP [dm6]	A	G	2.617e^-4	0.853	INTERGENIC
3R	14788150	3R_14788150_SNP [dm3] 3R_18962428_SNP [dm6]	A	G	2.623e^-4	0.853	INTRON CG42613 & 1 other
3R	14706454	3R_14706454_SNP [dm3] 3R_18880732_SNP [dm6]	A	G	2.631e^-4	0.853	INTERGENIC
3R	2720642	3R_2720642_SNP [dm3] 3R_6894920_SNP [dm6]	T	C	2.639e^-4	0.853	DOWNSTREAM CR44932 INTERGENIC	regulatory region FlyBase REDfly_CRMs
X	15865241	X_15865241_SNP [dm3] X_15971208_SNP [dm6]	C	G	2.644e^-4	0.853	INTRON mmd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	22332766	X_22332766_SNP [dm3] X_22930930_SNP [dm6]	G	A	2.664e^-4	0.853	INTERGENIC	transposable element FlyBase
3R	9093321	3R_9093321_SNP [dm3] 3R_13267599_SNP [dm6]	C	T	2.667e^-4	0.853	SYNONYMOUS_CODING Su_var_3-7	TF binding site mE1_TFBS_chinmo
3L	3681438	3L_3681438_SNP [dm3] 3L_3681438_SNP [dm6]	C	T	2.671e^-4	0.853	INTERGENIC
2L	13908354	2L_13908354_SNP [dm3] 2L_13908354_SNP [dm6]	C	T	2.672e^-4	0.853	SYNONYMOUS_CODING Ance UPSTREAM Ance-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5875922	2R_5875922_SNP [dm3] 2R_9988417_SNP [dm6]	G	A	2.677e^-4	0.853	UPSTREAM TER94 EXON CR45324	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
2L	6517000	2L_6517000_SNP [dm3] 2L_6517000_SNP [dm6]	T	C	2.677e^-4	0.853	INTRON CG31637
2R	15160384	2R_15160384_SNP [dm3] 2R_19272879_SNP [dm6]	A	T	2.684e^-4	0.853	INTRON rib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens
3R	12033136	3R_12033136_SNP [dm3] 3R_16207414_SNP [dm6]	G	T	2.704e^-4	0.853	DOWNSTREAM CR45639 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
2L	18575311	2L_18575311_SNP [dm3] 2L_18575311_SNP [dm6]	G	A	2.705e^-4	0.853	INTRON Pde11
2L	16578277	2L_16578277_SNP [dm3] 2L_16578277_SNP [dm6]	T	C	2.722e^-4	0.853	INTRON CG42389
2R	18122481	2R_18122481_DEL [dm3] 2R_22234976_DEL [dm6]	ATAAGAAAG	A	2.724e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_sens
X	10283397	X_10283397_SNP [dm3] X_10389364_SNP [dm6]	A	T	2.725e^-4	0.853	INTRON flw
3L	13490922	3L_13490922_SNP [dm3] 3L_13497822_SNP [dm6]	G	A	2.733e^-4	0.853	INTRON Tgi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21045740	3L_21045740_SNP [dm3] 3L_21052640_SNP [dm6]	A	G	2.735e^-4	0.853	INTRON siz	TF binding site BDTNP1_TFBS_dl
3L	9418962	3L_9418962_SNP [dm3] 3L_9425862_SNP [dm6]	G	T	2.740e^-4	0.853	INTRON CG3967	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	10299135	3R_10299135_SNP [dm3] 3R_14473413_SNP [dm6]	C	T	2.744e^-4	0.853	INTRON cv-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	13322783	3R_13322783_SNP [dm3] 3R_17497061_SNP [dm6]	T	G	2.746e^-4	0.853	INTRON Dscam3
3R	6179429	3R_6179429_DEL [dm3] 3R_10353707_DEL [dm6]	GGCAGGCTTTTCA...	G	2.751e^-4	0.853	INTRON jumu	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens
3L	21412092	3L_21412092_SNP [dm3] 3L_21418992_SNP [dm6]	A	G	2.764e^-4	0.853	INTRON rgn
3L	2600633	3L_2600633_SNP [dm3] 3L_2600633_SNP [dm6]	T	A	2.765e^-4	0.853	DOWNSTREAM CG16985 & 1 other INTRON CG16986	TF binding site mE1_TFBS_Ubx
3L	18926325	3L_18926325_SNP [dm3] 3L_18933225_SNP [dm6]	G	T	2.782e^-4	0.853	INTRON CG32204
2R	10934501	2R_10934501_SNP [dm3] 2R_15046996_SNP [dm6]	C	T	2.784e^-4	0.853	INTERGENIC
2L	4156675	2L_4156675_SNP [dm3] 2L_4156675_SNP [dm6]	A	T	2.787e^-4	0.853	INTERGENIC
X	3525258	X_3525258_SNP [dm3] X_3631225_SNP [dm6]	A	C	2.797e^-4	0.853	INTRON AstA-R1
3R	10190797	3R_10190797_DEL [dm3] 3R_14365075_DEL [dm6]	GGCACTCCGAG...	G	2.807e^-4	0.853	INTRON NK7.1	TF binding site mE1_TFBS_cnc
3L	7976394	3L_7976394_INS [dm3] 3L_7983294_INS [dm6]	G	TA	2.807e^-4	0.853	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10875208	3L_10875208_SNP [dm3] 3L_10882108_SNP [dm6]	C	A	2.811e^-4	0.853	UTR_5_PRIME CG6409 UPSTREAM CG7949 & 1 other
3L	21187692	3L_21187692_SNP [dm3] 3L_21194592_SNP [dm6]	G	A	2.821e^-4	0.853	DOWNSTREAM park INTERGENIC	TF binding site mE1_TFBS_cad
3R	9079042	3R_9079042_SNP [dm3] 3R_13253320_SNP [dm6]	A	G	2.823e^-4	0.853	INTRON Ace
X	5484188	X_5484188_SNP [dm3] X_5590155_SNP [dm6]	G	A	2.823e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2152278	3L_2152278_SNP [dm3] 3L_2152278_SNP [dm6]	T	G	2.828e^-4	0.853	UPSTREAM zormin DOWNSTREAM CG15822 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	13194700	3R_13194700_SNP [dm3] 3R_17368978_SNP [dm6]	A	T	2.834e^-4	0.853	INTERGENIC
3R	8688579	3R_8688579_SNP [dm3] 3R_12862857_SNP [dm6]	T	C	2.855e^-4	0.853	INTERGENIC
2R	5233442	2R_5233442_SNP [dm3] 2R_9345937_SNP [dm6]	T	C	2.870e^-4	0.853	SYNONYMOUS_CODING Or45a INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo
2R	13418275	2R_13418275_SNP [dm3] 2R_17530770_SNP [dm6]	T	A	2.874e^-4	0.853	INTRON Patronin	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	13194784	3R_13194784_SNP [dm3] 3R_17369062_SNP [dm6]	A	T	2.882e^-4	0.853	INTERGENIC
2R	13564151	2R_13564151_SNP [dm3] 2R_17676646_SNP [dm6]	C	G	2.889e^-4	0.853	INTRON Sema-1b	TF binding site mE1_TFBS_cad
2L	13486819	2L_13486819_SNP [dm3] 2L_13486819_SNP [dm6]	A	G	2.889e^-4	0.853	INTRON CG42784
2R	10711017	2R_10711017_SNP [dm3] 2R_14823512_SNP [dm6]	C	A	2.890e^-4	0.853	DOWNSTREAM CR45329 INTERGENIC
2L	19625824	2L_19625824_SNP [dm3] 2L_19625824_SNP [dm6]	T	G	2.891e^-4	0.853	INTRON Lar
3R	24422086	3R_24422086_SNP [dm3] 3R_28596364_SNP [dm6]	T	A	2.913e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9767416	2L_9767416_SNP [dm3] 2L_9767416_SNP [dm6]	A	T	2.919e^-4	0.853	SYNONYMOUS_CODING CG4017 INTRON ppk18	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9531408	2R_9531408_SNP [dm3] 2R_13643903_SNP [dm6]	G	T	2.924e^-4	0.853	INTRON fas
3R	15858408	3R_15858408_SNP [dm3] 3R_20032686_SNP [dm6]	G	C	2.933e^-4	0.853	SYNONYMOUS_CODING CG4936	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9783739	2L_9783739_SNP [dm3] 2L_9783739_SNP [dm6]	C	T	2.935e^-4	0.853	INTRON IP3K1	TF binding site mE1_TFBS_sens
3L	12520169	3L_12520169_SNP [dm3] 3L_12527069_SNP [dm6]	G	A	2.946e^-4	0.853	UPSTREAM eIF-2beta DOWNSTREAM nst INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14430717	3L_14430717_SNP [dm3] 3L_14437617_SNP [dm6]	A	T	2.950e^-4	0.853	INTRON bbg
3R	20684675	3R_20684675_SNP [dm3] 3R_24858953_SNP [dm6]	A	G	2.961e^-4	0.853	DOWNSTREAM ppk22 & 1 other INTRON ppk22
2R	13341757	2R_13341757_SNP [dm3] 2R_17454252_SNP [dm6]	T	C	2.963e^-4	0.853	SYNONYMOUS_CODING CG10764
3R	8678444	3R_8678444_SNP [dm3] 3R_12852722_SNP [dm6]	G	A	2.971e^-4	0.853	INTERGENIC
3R	9915397	3R_9915397_DEL [dm3] 3R_14089675_DEL [dm6]	AG	A	2.973e^-4	0.853	INTRON Npc2b
3L	14102704	3L_14102704_SNP [dm3] 3L_14109604_SNP [dm6]	T	C	2.977e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_zfh1
X	18143140	X_18143140_SNP [dm3] X_18249107_SNP [dm6]	A	T	2.979e^-4	0.853	INTERGENIC
X	18143145	X_18143145_SNP [dm3] X_18249112_SNP [dm6]	T	C	2.979e^-4	0.853	INTERGENIC
3L	14106328	3L_14106328_SNP [dm3] 3L_14113228_SNP [dm6]	A	C	2.981e^-4	0.853	SYNONYMOUS_CODING Sox21b
3L	18214951	3L_18214951_SNP [dm3] 3L_18221851_SNP [dm6]	C	A	2.990e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16259047	3L_16259047_SNP [dm3] 3L_16265947_SNP [dm6]	T	C	2.992e^-4	0.853	UTR_3_PRIME CG4950 UPSTREAM CG13051 DOWNSTREAM CG4950 & 1 other
3L	2107963	3L_2107963_SNP [dm3] 3L_2107963_SNP [dm6]	C	G	3.013e^-4	0.853	INTRON sls	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	14989289	3L_14989289_SNP [dm3] 3L_14996189_SNP [dm6]	C	T	3.019e^-4	0.853	SYNONYMOUS_CODING Zip71B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4916347	2L_4916347_SNP [dm3] 2L_4916347_SNP [dm6]	T	A	3.023e^-4	0.853	UPSTREAM hoe1 INTRON hoe1
3R	22982310	3R_22982310_SNP [dm3] 3R_27156588_SNP [dm6]	A	G	3.023e^-4	0.853	UTR_3_PRIME Men-b DOWNSTREAM Men-b INTRON Men-b
3L	16171349	3L_16171349_SNP [dm3] 3L_16178249_SNP [dm6]	T	C	3.024e^-4	0.853	UPSTREAM CR45755 DOWNSTREAM CR45754 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14388243	3L_14388243_DEL [dm3] 3L_14395143_DEL [dm6]	TG	T	3.027e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18569049	2R_18569049_SNP [dm3] 2R_22681544_SNP [dm6]	G	T	3.028e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8684094	3R_8684094_DEL [dm3] 3R_12858372_DEL [dm6]	TA	T	3.040e^-4	0.853	UPSTREAM CG10126 INTRON CG10126
X	7128941	X_7128941_SNP [dm3] X_7234908_SNP [dm6]	G	T	3.047e^-4	0.853	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	15968356	3L_15968356_INS [dm3] 3L_15975256_INS [dm6]	T	TT	3.054e^-4	0.853	SPLICE_SITE_REGION brm UPSTREAM CG17026 INTRON brm	TF binding site mE1_TFBS_HSA
3R	9070929	3R_9070929_SNP [dm3] 3R_13245207_SNP [dm6]	C	T	3.066e^-4	0.853	INTRON Ace	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10234405	3L_10234405_SNP [dm3] 3L_10241305_SNP [dm6]	A	T	3.069e^-4	0.853	DOWNSTREAM CR45403 INTERGENIC
2L	7775872	2L_7775872_SNP [dm3] 2L_7775872_SNP [dm6]	G	A	3.076e^-4	0.853	UTR_3_PRIME CG7179 DOWNSTREAM CG7191	TF binding site mE1_TFBS_cad
2L	7775874	2L_7775874_SNP [dm3] 2L_7775874_SNP [dm6]	T	A	3.076e^-4	0.853	UTR_3_PRIME CG7179 DOWNSTREAM CG7191	TF binding site mE1_TFBS_cad
2L	7775875	2L_7775875_SNP [dm3] 2L_7775875_SNP [dm6]	G	A	3.076e^-4	0.853	UTR_3_PRIME CG7179 DOWNSTREAM CG7191	TF binding site mE1_TFBS_cad
X	10223900	X_10223900_SNP [dm3] X_10329867_SNP [dm6]	C	G	3.078e^-4	0.853	UTR_5_PRIME Gip DOWNSTREAM CG2909 & 1 other
3R	16645954	3R_16645954_SNP [dm3] 3R_20820232_SNP [dm6]	G	A	3.081e^-4	0.853	SYNONYMOUS_CODING CG17271 INTRON CG17271
2L	9654961	2L_9654961_SNP [dm3] 2L_9654961_SNP [dm6]	G	T	3.081e^-4	0.853	SYNONYMOUS_CODING Apoltp
2L	4156669	2L_4156669_SNP [dm3] 2L_4156669_SNP [dm6]	A	G	3.094e^-4	0.853	INTERGENIC
X	16990995	X_16990995_SNP [dm3] X_17096962_SNP [dm6]	C	T	3.097e^-4	0.853	SYNONYMOUS_CODING CG16700 INTRON CG4991	TF binding site mE1_TFBS_sens
2L	10684522	2L_10684522_SNP [dm3] 2L_10684522_SNP [dm6]	A	G	3.101e^-4	0.853	UPSTREAM CG7299 INTERGENIC
2L	12264983	2L_12264983_SNP [dm3] 2L_12264983_SNP [dm6]	C	T	3.103e^-4	0.853	INTRON aret
3R	9283566	3R_9283566_SNP [dm3] 3R_13457844_SNP [dm6]	C	A	3.103e^-4	0.853	SYNONYMOUS_CODING CG14372 EXON CR17025
2R	14137154	2R_14137154_SNP [dm3] 2R_18249649_SNP [dm6]	A	T	3.105e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	26486380	3R_26486380_SNP [dm3] 3R_30660658_SNP [dm6]	A	T	3.114e^-4	0.853	INTERGENIC
2R	5141512	2R_5141512_SNP [dm3] 2R_9254007_SNP [dm6]	T	G	3.117e^-4	0.853	UTR_3_PRIME Pkn DOWNSTREAM CG30343
3R	9226839	3R_9226839_SNP [dm3] 3R_13401117_SNP [dm6]	A	G	3.121e^-4	0.853	INTRON CG9796	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	9162278	3R_9162278_SNP [dm3] 3R_13336556_SNP [dm6]	T	A	3.133e^-4	0.853	INTERGENIC
2L	18288596	2L_18288596_SNP [dm3] 2L_18288596_SNP [dm6]	C	A	3.141e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	8667481	3R_8667481_SNP [dm3] 3R_12841759_SNP [dm6]	G	T	3.144e^-4	0.853	UTR_3_PRIME beat-Va DOWNSTREAM beat-Va
3R	7078075	3R_7078075_SNP [dm3] 3R_11252353_SNP [dm6]	T	A	3.161e^-4	0.853	DOWNSTREAM CR43283 INTRON CR43283 EXON CR43283	TF binding site mE1_TFBS_kn
3R	4335194	3R_4335194_SNP [dm3] 3R_8509472_SNP [dm6]	T	C	3.168e^-4	0.853	DOWNSTREAM Or85b INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12090661	2R_12090661_SNP [dm3] 2R_16203156_SNP [dm6]	T	C	3.170e^-4	0.853	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
3R	9086518	3R_9086518_SNP [dm3] 3R_13260796_SNP [dm6]	C	T	3.188e^-4	0.853	INTRON CG11686
3L	14388257	3L_14388257_SNP [dm3] 3L_14395157_SNP [dm6]	G	C	3.189e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	14388260	3L_14388260_DEL [dm3] 3L_14395160_DEL [dm6]	CT	A	3.189e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA
X	13332053	X_13332053_SNP [dm3] X_13438020_SNP [dm6]	C	A	3.189e^-4	0.853	INTERGENIC
3L	6263622	3L_6263622_SNP [dm3] 3L_6270522_SNP [dm6]	A	G	3.194e^-4	0.853	INTERGENIC
3R	7284891	3R_7284891_SNP [dm3] 3R_11459169_SNP [dm6]	A	G	3.195e^-4	0.853	INTRON CG17230 & 1 other
3L	13010037	3L_13010037_SNP [dm3] 3L_13016937_SNP [dm6]	G	A	3.201e^-4	0.853	DOWNSTREAM mRpL20 & 1 other INTERGENIC
X	7129413	X_7129413_INS [dm3] X_7235380_INS [dm6]	A	TG	3.203e^-4	0.853	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	13486058	2L_13486058_INS [dm3] 2L_13486058_INS [dm6]	T	TT	3.205e^-4	0.853	INTRON CG42784
3R	19557694	3R_19557694_SNP [dm3] 3R_23731972_SNP [dm6]	G	A	3.209e^-4	0.853	SYNONYMOUS_CODING Rpn9 DOWNSTREAM CG10365	TF binding site mE1_TFBS_sens
2L	4156586	2L_4156586_SNP [dm3] 2L_4156586_SNP [dm6]	T	G	3.210e^-4	0.853	INTERGENIC
2R	13551081	2R_13551081_SNP [dm3] 2R_17663576_SNP [dm6]	G	C	3.211e^-4	0.853	INTRON CCHa1-R
3L	2114578	3L_2114578_SNP [dm3] 3L_2114578_SNP [dm6]	T	G	3.224e^-4	0.853	INTRON sls
X	12562681	X_12562681_SNP [dm3] X_12668648_SNP [dm6]	A	G	3.226e^-4	0.853	INTRON Tis11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	9157533	3R_9157533_SNP [dm3] 3R_13331811_SNP [dm6]	A	C	3.232e^-4	0.853	INTRON PK2-R2
3L	9419003	3L_9419003_SNP [dm3] 3L_9425903_SNP [dm6]	T	C	3.235e^-4	0.853	INTRON CG3967	TF binding site mE1_TFBS_inv
3R	9181993	3R_9181993_SNP [dm3] 3R_13356271_SNP [dm6]	G	C	3.235e^-4	0.853	DOWNSTREAM mthl12 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9308261	3R_9308261_SNP [dm3] 3R_13482539_SNP [dm6]	C	T	3.237e^-4	0.853	INTERGENIC
2R	12858283	2R_12858283_INS [dm3] 2R_16970778_INS [dm6]	T	TGGAT	3.240e^-4	0.853	EXON CR44377
2R	12979204	2R_12979204_SNP [dm3] 2R_17091699_SNP [dm6]	A	G	3.241e^-4	0.853	UPSTREAM CG6984 & 1 other INTRON Sply	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	10144271	X_10144271_SNP [dm3] X_10250238_SNP [dm6]	T	C	3.243e^-4	0.853	INTRON Hk
3R	8441372	3R_8441372_SNP [dm3] 3R_12615650_SNP [dm6]	C	T	3.245e^-4	0.853	INTERGENIC
X	19233227	X_19233227_INS [dm3] X_19339194_INS [dm6]	A	AA	3.247e^-4	0.853	INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18569001	2R_18569001_SNP [dm3] 2R_22681496_SNP [dm6]	G	T	3.255e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18569068	2R_18569068_SNP [dm3] 2R_22681563_SNP [dm6]	C	T	3.255e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19814367	2R_19814367_SNP [dm3] 2R_23926844_SNP [dm6]	C	A	3.270e^-4	0.853	UTR_3_PRIME Ca-P60A & 1 other DOWNSTREAM Ca-P60A	TF binding site mE1_TFBS_cad
X	10431608	X_10431608_SNP [dm3] X_10537575_SNP [dm6]	G	A	3.272e^-4	0.853	INTRON spri	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6821640	2L_6821640_SNP [dm3] 2L_6821640_SNP [dm6]	T	C	3.276e^-4	0.853	UPSTREAM sens-2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16259045	3L_16259045_SNP [dm3] 3L_16265945_SNP [dm6]	C	T	3.280e^-4	0.853	UTR_3_PRIME CG4950 UPSTREAM CG13051 DOWNSTREAM CG4950 & 1 other
2R	16479008	2R_16479008_SNP [dm3] 2R_20591503_SNP [dm6]	T	A	3.283e^-4	0.853	INTRON bl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9705547	2L_9705547_SNP [dm3] 2L_9705547_SNP [dm6]	C	T	3.287e^-4	0.853	INTRON pelo & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	703242	3L_703242_SNP [dm3] 3L_703242_SNP [dm6]	A	G	3.304e^-4	0.853	INTERGENIC
3R	17005492	3R_17005492_SNP [dm3] 3R_21179770_SNP [dm6]	C	T	3.304e^-4	0.853	INTRON SNF4Agamma	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc
2R	5229353	2R_5229353_SNP [dm3] 2R_9341848_SNP [dm6]	G	A	3.307e^-4	0.853	INTRON CG13954 & 1 other
2R	18569008	2R_18569008_SNP [dm3] 2R_22681503_SNP [dm6]	C	T	3.313e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9739885	2L_9739885_SNP [dm3] 2L_9739885_SNP [dm6]	T	C	3.314e^-4	0.853	INTRON Nckx30C
2L	7085018	2L_7085018_SNP [dm3] 2L_7085018_SNP [dm6]	G	A	3.327e^-4	0.853	UPSTREAM Pvf2 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	15848700	2L_15848700_DEL [dm3] 2L_15848700_DEL [dm6]	AC	T	3.331e^-4	0.853	INTERGENIC
X	18150549	X_18150549_SNP [dm3] X_18256516_SNP [dm6]	A	T	3.343e^-4	0.853	DOWNSTREAM CR45613 INTERGENIC
3R	21390775	3R_21390775_SNP [dm3] 3R_25565053_SNP [dm6]	T	A	3.368e^-4	0.853	INTRON msi
3R	9346417	3R_9346417_SNP [dm3] 3R_13520695_SNP [dm6]	T	A	3.374e^-4	0.853	INTERGENIC
3L	2114567	3L_2114567_SNP [dm3] 3L_2114567_SNP [dm6]	A	T	3.388e^-4	0.853	INTRON sls
3R	9320824	3R_9320824_SNP [dm3] 3R_13495102_SNP [dm6]	A	T	3.391e^-4	0.853	INTERGENIC
3R	9999714	3R_9999714_SNP [dm3] 3R_14173992_SNP [dm6]	G	A	3.399e^-4	0.853	UTR_3_PRIME Dop1R1
3R	19355208	3R_19355208_SNP [dm3] 3R_23529486_SNP [dm6]	C	T	3.401e^-4	0.853	UPSTREAM CG10175 INTRON CG10175
3L	9416904	3L_9416904_SNP [dm3] 3L_9423804_SNP [dm6]	T	C	3.409e^-4	0.853	SYNONYMOUS_CODING aay INTRON CG3967	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9743961	2L_9743961_SNP [dm3] 2L_9743961_SNP [dm6]	G	A	3.409e^-4	0.853	UTR_5_PRIME Nckx30C	TF binding site mE1_TFBS_chinmo
3R	8686247	3R_8686247_SNP [dm3] 3R_12860525_SNP [dm6]	T	C	3.411e^-4	0.853	INTERGENIC
2R	12127886	2R_12127886_SNP [dm3] 2R_16240381_SNP [dm6]	A	G	3.412e^-4	0.853	NON_SYNONYMOUS_CODING krimp DOWNSTREAM CG15708	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9716797	3L_9716797_SNP [dm3] 3L_9723697_SNP [dm6]	C	G	3.420e^-4	0.853	SYNONYMOUS_CODING defl UPSTREAM nbs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3104437	3L_3104437_INS [dm3] 3L_3104437_INS [dm6]	C	CC	3.423e^-4	0.853	INTRON Cht7
3R	2619715	3R_2619715_SNP [dm3] 3R_6793993_SNP [dm6]	A	T	3.426e^-4	0.853	INTRON Dfd
3R	25065716	3R_25065716_SNP [dm3] 3R_29239994_SNP [dm6]	G	A	3.436e^-4	0.853	DOWNSTREAM CG31445 INTRON CG31427
X	6388208	X_6388208_SNP [dm3] X_6494175_SNP [dm6]	G	A	3.438e^-4	0.853	INTRON CG42340
3L	9419059	3L_9419059_SNP [dm3] 3L_9425959_SNP [dm6]	A	G	3.443e^-4	0.853	INTRON CG3967	TF binding site mE1_TFBS_inv
2L	8736067	2L_8736067_SNP [dm3] 2L_8736067_SNP [dm6]	A	C	3.451e^-4	0.853	UPSTREAM raw INTRON raw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	4559966	2R_4559966_SNP [dm3] 2R_8672461_SNP [dm6]	T	C	3.459e^-4	0.853	INTRON Acsl
X	3523546	X_3523546_SNP [dm3] X_3629513_SNP [dm6]	C	T	3.463e^-4	0.853	INTRON AstA-R1
2R	14756417	2R_14756417_SNP [dm3] 2R_18868912_SNP [dm6]	T	G	3.474e^-4	0.853	UPSTREAM CG43109 INTERGENIC
3R	25654299	3R_25654299_SNP [dm3] 3R_29828577_SNP [dm6]	A	G	3.474e^-4	0.853	INTRON Atg16
3L	16810284	3L_16810284_SNP [dm3] 3L_16817184_SNP [dm6]	G	A	3.475e^-4	0.853	INTRON nudC & 1 other
3R	20794862	3R_20794862_SNP [dm3] 3R_24969140_SNP [dm6]	G	A	3.476e^-4	0.853	INTERGENIC
3L	10872776	3L_10872776_SNP [dm3] 3L_10879676_SNP [dm6]	C	T	3.479e^-4	0.853	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6079863	2L_6079863_SNP [dm3] 2L_6079863_SNP [dm6]	A	C	3.481e^-4	0.853	DOWNSTREAM CR9162 INTRON CR44773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	619615	2L_619615_SNP [dm3] 2L_619615_SNP [dm6]	A	T	3.485e^-4	0.853	DOWNSTREAM lectin-21Cb INTERGENIC
X	13576624	X_13576624_SNP [dm3] X_13682591_SNP [dm6]	T	C	3.487e^-4	0.853	UPSTREAM CG11158 INTERGENIC
2L	14475003	2L_14475003_SNP [dm3] 2L_14475003_SNP [dm6]	T	C	3.490e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	9079064	3R_9079064_SNP [dm3] 3R_13253342_SNP [dm6]	T	A	3.490e^-4	0.853	INTRON Ace
2R	17895642	2R_17895642_SNP [dm3] 2R_22008137_SNP [dm6]	G	A	3.492e^-4	0.853	INTRON CG34370
2L	4915923	2L_4915923_SNP [dm3] 2L_4915923_SNP [dm6]	T	A	3.497e^-4	0.853	UPSTREAM hoe1 INTRON hoe1
3L	13096308	3L_13096308_SNP [dm3] 3L_13103208_SNP [dm6]	G	T	3.499e^-4	0.853	INTERGENIC
3R	9291184	3R_9291184_SNP [dm3] 3R_13465462_SNP [dm6]	C	T	3.502e^-4	0.853	DOWNSTREAM CR17025 INTRON CR17025
2L	7085014	2L_7085014_INS [dm3] 2L_7085014_INS [dm6]	T	TTGC	3.503e^-4	0.853	UPSTREAM Pvf2 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	7085016	2L_7085016_INS [dm3] 2L_7085016_INS [dm6]	A	AG	3.503e^-4	0.853	UPSTREAM Pvf2 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	12977177	2R_12977177_SNP [dm3] 2R_17089672_SNP [dm6]	C	A	3.507e^-4	0.853	INTRON Sply	TF binding site mE1_TFBS_sens
3L	21202585	3L_21202585_SNP [dm3] 3L_21209485_SNP [dm6]	C	A	3.508e^-4	0.853	SYNONYMOUS_CODING CG10510 UPSTREAM CG10508	TF binding site mE1_TFBS_cad
3L	9716744	3L_9716744_SNP [dm3] 3L_9723644_SNP [dm6]	C	T	3.516e^-4	0.853	SYNONYMOUS_CODING defl UPSTREAM nbs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	10886775	X_10886775_DEL [dm3] X_10992742_DEL [dm6]	ATGATAA	A	3.521e^-4	0.853	INTRON CG42339
3R	8680394	3R_8680394_SNP [dm3] 3R_12854672_SNP [dm6]	G	T	3.529e^-4	0.853	DOWNSTREAM CG10126 INTERGENIC
2R	19991045	2R_19991045_SNP [dm3] 2R_24103522_SNP [dm6]	A	T	3.532e^-4	0.853	NON_SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8688459	3R_8688459_SNP [dm3] 3R_12862737_SNP [dm6]	A	C	3.535e^-4	0.853	INTERGENIC
2L	18093650	2L_18093650_SNP [dm3] 2L_18093650_SNP [dm6]	T	A	3.538e^-4	0.853	INTERGENIC
2L	19630703	2L_19630703_SNP [dm3] 2L_19630703_SNP [dm6]	T	A	3.541e^-4	0.853	INTRON Lar
3L	9418924	3L_9418924_SNP [dm3] 3L_9425824_SNP [dm6]	T	C	3.552e^-4	0.853	INTRON CG3967	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4927979	2L_4927979_SNP [dm3] 2L_4927979_SNP [dm6]	A	T	3.561e^-4	0.853	INTRON hoe1
3R	13456061	3R_13456061_SNP [dm3] 3R_17630339_SNP [dm6]	G	A	3.562e^-4	0.853	UPSTREAM CG43175 DOWNSTREAM tRNA:CR31569 INTERGENIC
3L	901287	3L_901287_SNP [dm3] 3L_901287_SNP [dm6]	C	A	3.564e^-4	0.853	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	9531388	2R_9531388_SNP [dm3] 2R_13643883_SNP [dm6]	T	A	3.589e^-4	0.853	INTRON fas
X	10232515	X_10232515_SNP [dm3] X_10338482_SNP [dm6]	C	A	3.592e^-4	0.853	INTRON CG43740
3R	9149268	3R_9149268_SNP [dm3] 3R_13323546_SNP [dm6]	T	C	3.595e^-4	0.853	INTERGENIC
2R	10450309	2R_10450309_SNP [dm3] 2R_14562804_SNP [dm6]	G	T	3.597e^-4	0.853	INTRON ttv
3R	13194730	3R_13194730_SNP [dm3] 3R_17369008_SNP [dm6]	A	T	3.629e^-4	0.853	INTERGENIC
3L	9482136	3L_9482136_SNP [dm3] 3L_9489036_SNP [dm6]	C	T	3.636e^-4	0.853	DOWNSTREAM CG32037 INTRON CG32036
3R	8692366	3R_8692366_SNP [dm3] 3R_12866644_SNP [dm6]	A	G	3.641e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_ftz_f1
2L	19626087	2L_19626087_SNP [dm3] 2L_19626087_SNP [dm6]	G	C	3.648e^-4	0.853	INTRON Lar
3L	2152217	3L_2152217_SNP [dm3] 3L_2152217_SNP [dm6]	T	A	3.655e^-4	0.853	UPSTREAM zormin DOWNSTREAM CG15822 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	14147740	2R_14147740_SNP [dm3] 2R_18260235_SNP [dm6]	C	A	3.658e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15048933	2R_15048933_SNP [dm3] 2R_19161428_SNP [dm6]	A	G	3.659e^-4	0.853	INTRON ena
X	3524474	X_3524474_SNP [dm3] X_3630441_SNP [dm6]	C	A	3.661e^-4	0.853	INTRON AstA-R1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16171350	3L_16171350_SNP [dm3] 3L_16178250_SNP [dm6]	G	C	3.668e^-4	0.853	UPSTREAM CR45755 DOWNSTREAM CR45754 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9516154	2L_9516154_SNP [dm3] 2L_9516154_SNP [dm6]	G	T	3.677e^-4	0.853	SYNONYMOUS_CODING CG33298
3L	2652170	3L_2652170_SNP [dm3] 3L_2652170_SNP [dm6]	C	A	3.681e^-4	0.853	NON_SYNONYMOUS_CODING Snup START_GAINED CG42304 UTR_5_PRIME CG42304 UPSTREAM Aats-pro	TF binding site mE1_TFBS_cad
2L	4032100	2L_4032100_SNP [dm3] 2L_4032100_SNP [dm6]	G	T	3.687e^-4	0.853	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	11951274	2L_11951274_SNP [dm3] 2L_11951274_SNP [dm6]	A	T	3.687e^-4	0.853	DOWNSTREAM CR43314 INTERGENIC
X	8814240	X_8814240_SNP [dm3] X_8920207_SNP [dm6]	G	T	3.690e^-4	0.853	INTRON rdgA & 1 other
3R	9157968	3R_9157968_SNP [dm3] 3R_13332246_SNP [dm6]	T	A	3.690e^-4	0.853	SYNONYMOUS_CODING PK2-R2
2R	1129277	2R_1129277_SNP [dm3] 2R_5241772_SNP [dm6]	T	A	3.699e^-4	0.853	INTRON Nipped-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4378836	2L_4378836_SNP [dm3] 2L_4378836_SNP [dm6]	A	T	3.699e^-4	0.853	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9768669	2L_9768669_SNP [dm3] 2L_9768669_SNP [dm6]	T	A	3.701e^-4	0.853	UTR_3_PRIME CG4017 UPSTREAM CG17633 INTRON ppk18
3L	2779837	3L_2779837_SNP [dm3] 3L_2779837_SNP [dm6]	T	C	3.703e^-4	0.853	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13107242	2L_13107242_SNP [dm3] 2L_13107242_SNP [dm6]	A	G	3.708e^-4	0.853	INTRON CG5142	TF binding site mE1_TFBS_chinmo
3L	6263842	3L_6263842_SNP [dm3] 3L_6270742_SNP [dm6]	A	T	3.718e^-4	0.853	INTERGENIC
2L	11813955	2L_11813955_SNP [dm3] 2L_11813955_SNP [dm6]	A	C	3.721e^-4	0.853	UPSTREAM CycY DOWNSTREAM Pde1c INTERGENIC
2L	19929742	2L_19929742_SNP [dm3] 2L_19929742_SNP [dm6]	A	C	3.722e^-4	0.853	INTRON sick
3R	23498067	3R_23498067_SNP [dm3] 3R_27672345_SNP [dm6]	A	G	3.728e^-4	0.853	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3338382	2L_3338382_SNP [dm3] 2L_3338382_SNP [dm6]	T	C	3.730e^-4	0.853	SYNONYMOUS_CODING E23
2R	8934019	2R_8934019_SNP [dm3] 2R_13046514_SNP [dm6]	T	G	3.734e^-4	0.853	UTR_3_PRIME CG13323 DOWNSTREAM CG13323
3R	8682999	3R_8682999_SNP [dm3] 3R_12857277_SNP [dm6]	A	C	3.743e^-4	0.853	INTRON CG10126
2R	18449000	2R_18449000_SNP [dm3] 2R_22561495_SNP [dm6]	C	T	3.747e^-4	0.853	UPSTREAM CG11362 INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn
2L	13493567	2L_13493567_SNP [dm3] 2L_13493567_SNP [dm6]	T	C	3.749e^-4	0.853	INTRON CG42784
2L	5327930	2L_5327930_SNP [dm3] 2L_5327930_SNP [dm6]	A	T	3.754e^-4	0.853	UTR_3_PRIME cype DOWNSTREAM CG14022 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	1986883	3L_1986883_SNP [dm3] 3L_1986883_SNP [dm6]	A	G	3.755e^-4	0.853	INTERGENIC
3R	7114197	3R_7114197_INS [dm3] 3R_11288475_INS [dm6]	G	GAG	3.755e^-4	0.853	INTRON CR31386
3L	17693076	3L_17693076_SNP [dm3] 3L_17699976_SNP [dm6]	A	T	3.764e^-4	0.853	INTRON Ccn
3L	14106580	3L_14106580_SNP [dm3] 3L_14113480_SNP [dm6]	G	A	3.764e^-4	0.853	SYNONYMOUS_CODING Sox21b
3R	2595385	3R_2595385_SNP [dm3] 3R_6769663_SNP [dm6]	A	C	3.772e^-4	0.853	INTRON CR42721	TF binding site mE1_TFBS_cad
X	7462915	X_7462915_SNP [dm3] X_7568882_SNP [dm6]	A	T	3.773e^-4	0.853	INTERGENIC
3L	14388246	3L_14388246_SNP [dm3] 3L_14395146_SNP [dm6]	G	A	3.777e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	13194303	3R_13194303_SNP [dm3] 3R_17368581_SNP [dm6]	G	T	3.785e^-4	0.853	INTERGENIC
3R	2718652	3R_2718652_SNP [dm3] 3R_6892930_SNP [dm6]	C	T	3.787e^-4	0.853	EXON CR45559	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11104647	3R_11104647_SNP [dm3] 3R_15278925_SNP [dm6]	A	G	3.787e^-4	0.853	UPSTREAM MRG15 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9655244	2L_9655244_SNP [dm3] 2L_9655244_SNP [dm6]	G	T	3.787e^-4	0.853	SYNONYMOUS_CODING Apoltp
3L	14388263	3L_14388263_SNP [dm3] 3L_14395163_SNP [dm6]	A	T	3.793e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	20197347	3R_20197347_SNP [dm3] 3R_24371625_SNP [dm6]	C	T	3.810e^-4	0.853	DOWNSTREAM CG13614 INTRON CG17782
2L	12603627	2L_12603627_SNP [dm3] 2L_12603627_SNP [dm6]	G	T	3.814e^-4	0.853	INTRON nub	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	9312453	2L_9312453_SNP [dm3] 2L_9312453_SNP [dm6]	T	C	3.816e^-4	0.853	INTERGENIC
2R	9429810	2R_9429810_SNP [dm3] 2R_13542305_SNP [dm6]	C	A	3.819e^-4	0.853	NON_SYNONYMOUS_CODING CG6145 INTRON CG6145
2L	9804535	2L_9804535_SNP [dm3] 2L_9804535_SNP [dm6]	C	T	3.822e^-4	0.853	INTRON nAChRalpha6
2L	9804622	2L_9804622_SNP [dm3] 2L_9804622_SNP [dm6]	C	A	3.822e^-4	0.853	INTRON nAChRalpha6
2L	9804972	2L_9804972_SNP [dm3] 2L_9804972_SNP [dm6]	C	T	3.822e^-4	0.853	INTRON nAChRalpha6
2L	4392950	2L_4392950_SNP [dm3] 2L_4392950_SNP [dm6]	G	T	3.822e^-4	0.853	SYNONYMOUS_CODING CG3652 DOWNSTREAM Tps1	TF binding site mE1_TFBS_cad
2R	12033905	2R_12033905_SNP [dm3] 2R_16146400_SNP [dm6]	A	G	3.826e^-4	0.853	SYNONYMOUS_CODING Ext2 DOWNSTREAM Aats-cys
3R	8688825	3R_8688825_SNP [dm3] 3R_12863103_SNP [dm6]	T	C	3.827e^-4	0.853	INTERGENIC
3L	1167031	3L_1167031_SNP [dm3] 3L_1167031_SNP [dm6]	A	T	3.828e^-4	0.853	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	13430769	2R_13430769_SNP [dm3] 2R_17543264_SNP [dm6]	A	G	3.835e^-4	0.853	SYNONYMOUS_CODING CG43370 UPSTREAM CG34194	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13120455	2L_13120455_SNP [dm3] 2L_13120455_SNP [dm6]	G	C	3.836e^-4	0.853	UTR_3_PRIME CG43050
X	11096215	X_11096215_SNP [dm3] X_11202182_SNP [dm6]	T	C	3.843e^-4	0.853	UPSTREAM CG11106 INTERGENIC
3L	14093070	3L_14093070_SNP [dm3] 3L_14099970_SNP [dm6]	C	T	3.843e^-4	0.853	INTERGENIC
2R	4839406	2R_4839406_SNP [dm3] 2R_8951901_SNP [dm6]	T	C	3.848e^-4	0.853	UPSTREAM CG33199 & 2 others INTRON Tom7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	10365418	3L_10365418_SNP [dm3] 3L_10372318_SNP [dm6]	C	T	3.853e^-4	0.853	INTERGENIC
3R	13194774	3R_13194774_SNP [dm3] 3R_17369052_SNP [dm6]	C	A	3.855e^-4	0.853	INTERGENIC
3L	21467434	3L_21467434_SNP [dm3] 3L_21474334_SNP [dm6]	G	A	3.856e^-4	0.853	UTR_3_PRIME croc	regulatory region REDfly_CRMs
3R	13194688	3R_13194688_SNP [dm3] 3R_17368966_SNP [dm6]	G	C	3.856e^-4	0.853	INTERGENIC
3R	9128411	3R_9128411_SNP [dm3] 3R_13302689_SNP [dm6]	C	T	3.858e^-4	0.853	START_GAINED CG32473 UTR_5_PRIME CG32473 UPSTREAM CG43208 DOWNSTREAM CG8774
X	12655814	X_12655814_SNP [dm3] X_12761781_SNP [dm6]	T	C	3.862e^-4	0.853	SYNONYMOUS_CODING CG12717
2R	12978280	2R_12978280_SNP [dm3] 2R_17090775_SNP [dm6]	G	T	3.862e^-4	0.853	INTRON Sply
2L	6807184	2L_6807184_SNP [dm3] 2L_6807184_SNP [dm6]	G	A	3.869e^-4	0.853	INTERGENIC
3L	13192329	3L_13192329_SNP [dm3] 3L_13199229_SNP [dm6]	A	G	3.869e^-4	0.853	INTERGENIC
X	5504682	X_5504682_SNP [dm3] X_5610649_SNP [dm6]	G	A	3.875e^-4	0.853	INTRON Vsx1
2R	5231896	2R_5231896_SNP [dm3] 2R_9344391_SNP [dm6]	T	C	3.875e^-4	0.853	UPSTREAM Or45a INTRON CG13954 & 1 other
3R	20342040	3R_20342040_SNP [dm3] 3R_24516318_SNP [dm6]	G	A	3.875e^-4	0.853	SYNONYMOUS_CODING CG13617	TF binding site mE1_TFBS_chinmo
2R	10444552	2R_10444552_SNP [dm3] 2R_14557047_SNP [dm6]	C	A	3.877e^-4	0.853	INTRON ttv
2L	18299127	2L_18299127_SNP [dm3] 2L_18299127_SNP [dm6]	G	A	3.878e^-4	0.853	INTERGENIC
3R	8667437	3R_8667437_SNP [dm3] 3R_12841715_SNP [dm6]	C	T	3.878e^-4	0.853	UTR_3_PRIME beat-Va DOWNSTREAM beat-Va
3R	9236177	3R_9236177_SNP [dm3] 3R_13410455_SNP [dm6]	C	T	3.881e^-4	0.853	INTRON yellow-e	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9418870	3L_9418870_MNP [dm3] 3L_9425770_MNP [dm6]	TGA	CAC	3.883e^-4	0.853	DOWNSTREAM aay INTRON CG3967	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3047006	3L_3047006_SNP [dm3] 3L_3047006_SNP [dm6]	C	T	3.885e^-4	0.853	UPSTREAM Sk2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	6152256	3R_6152256_SNP [dm3] 3R_10326534_SNP [dm6]	T	C	3.886e^-4	0.853	INTRON Bruce	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25336720	3R_25336720_SNP [dm3] 3R_29510998_SNP [dm6]	T	C	3.888e^-4	0.853	INTERGENIC
2L	12605727	2L_12605727_SNP [dm3] 2L_12605727_SNP [dm6]	G	T	3.894e^-4	0.853	INTRON nub
3R	25343389	3R_25343389_SNP [dm3] 3R_29517667_SNP [dm6]	T	A	3.896e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	17762948	3R_17762948_SNP [dm3] 3R_21937226_SNP [dm6]	C	T	3.899e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9236250	3R_9236250_INS [dm3] 3R_13410528_INS [dm6]	T	TTTGT	3.900e^-4	0.853	INTRON yellow-e	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12217368	3R_12217368_SNP [dm3] 3R_16391646_SNP [dm6]	T	C	3.902e^-4	0.853	INTRON ss	regulatory region REDfly_CRMs
2L	6517142	2L_6517142_SNP [dm3] 2L_6517142_SNP [dm6]	T	C	3.903e^-4	0.853	INTRON CG31637
3R	21590657	3R_21590657_SNP [dm3] 3R_25764935_SNP [dm6]	A	G	3.906e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_inv
3R	8664794	3R_8664794_SNP [dm3] 3R_12839072_SNP [dm6]	C	T	3.910e^-4	0.853	INTERGENIC
3L	10740572	3L_10740572_SNP [dm3] 3L_10747472_SNP [dm6]	A	G	3.918e^-4	0.853	INTERGENIC
3R	13194712	3R_13194712_SNP [dm3] 3R_17368990_SNP [dm6]	T	A	3.922e^-4	0.853	INTERGENIC
3L	14265014	3L_14265014_SNP [dm3] 3L_14271914_SNP [dm6]	G	T	3.924e^-4	0.853	INTERGENIC
3R	9156775	3R_9156775_SNP [dm3] 3R_13331053_SNP [dm6]	T	A	3.928e^-4	0.853	INTRON PK2-R2
2L	6079871	2L_6079871_SNP [dm3] 2L_6079871_SNP [dm6]	T	A	3.929e^-4	0.853	DOWNSTREAM CR9162 INTRON CR44773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	13194290	3R_13194290_SNP [dm3] 3R_17368568_SNP [dm6]	T	C	3.931e^-4	0.853	INTERGENIC
3R	13194761	3R_13194761_SNP [dm3] 3R_17369039_SNP [dm6]	G	T	3.934e^-4	0.853	INTERGENIC
3L	18181219	3L_18181219_SNP [dm3] 3L_18188119_SNP [dm6]	A	T	3.934e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8814218	X_8814218_SNP [dm3] X_8920185_SNP [dm6]	T	C	3.938e^-4	0.853	INTRON rdgA & 1 other
3R	20990683	3R_20990683_SNP [dm3] 3R_25164961_SNP [dm6]	G	A	3.945e^-4	0.853	INTERGENIC
3R	10926871	3R_10926871_SNP [dm3] 3R_15101149_SNP [dm6]	C	T	3.947e^-4	0.853	SYNONYMOUS_CODING CG42788	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12724310	3R_12724310_SNP [dm3] 3R_16898588_SNP [dm6]	A	T	3.947e^-4	0.853	DOWNSTREAM CR43617 INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	21027168	2L_21027168_SNP [dm3] 2L_21027168_SNP [dm6]	G	T	3.952e^-4	0.853	INTRON CG42238	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	19985170	2R_19985170_SNP [dm3] 2R_24097647_SNP [dm6]	G	T	3.969e^-4	0.853	INTRON gek	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9302944	3R_9302944_SNP [dm3] 3R_13477222_SNP [dm6]	G	A	3.972e^-4	0.853	INTERGENIC
3R	15858312	3R_15858312_SNP [dm3] 3R_20032590_SNP [dm6]	T	C	3.973e^-4	0.853	SYNONYMOUS_CODING CG4936	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2527316	2L_2527316_SNP [dm3] 2L_2527316_SNP [dm6]	G	A	3.973e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_cad
X	5011559	X_5011559_INS [dm3] X_5117526_INS [dm6]	T	TAACTGGGGG	3.975e^-4	0.853	INTRON rg & 1 other
3R	13189687	3R_13189687_DEL [dm3] 3R_17363965_DEL [dm6]	GCCGT	G	3.987e^-4	0.853	INTRON beat-IIa
3R	2619782	3R_2619782_SNP [dm3] 3R_6794060_SNP [dm6]	G	A	3.999e^-4	0.853	INTRON Dfd
2L	4329695	2L_4329695_SNP [dm3] 2L_4329695_SNP [dm6]	C	T	4.001e^-4	0.853	SYNONYMOUS_CODING CG16857	TF binding site mE1_TFBS_chinmo
2L	6778520	2L_6778520_INS [dm3] 2L_6778520_INS [dm6]	T	TTCACTGTACAAC...	4.002e^-4	0.853	DOWNSTREAM nrv1 & 1 other INTERGENIC
3L	15115399	3L_15115399_SNP [dm3] 3L_15122299_SNP [dm6]	A	G	4.015e^-4	0.853	UTR_3_PRIME CG32847 INTRON Cep135 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	9380612	3R_9380612_SNP [dm3] 3R_13554890_SNP [dm6]	T	A	4.017e^-4	0.853	INTERGENIC
3R	9215711	3R_9215711_SNP [dm3] 3R_13389989_SNP [dm6]	C	A	4.027e^-4	0.853	INTRON CCHa2
3L	15841864	3L_15841864_SNP [dm3] 3L_15848764_SNP [dm6]	G	T	4.027e^-4	0.853	UTR_3_PRIME pHCl
2R	14050949	2R_14050949_SNP [dm3] 2R_18163444_SNP [dm6]	G	T	4.029e^-4	0.853	SYNONYMOUS_CODING CG10915	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18181197	3L_18181197_SNP [dm3] 3L_18188097_SNP [dm6]	G	A	4.031e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9060641	3R_9060641_SNP [dm3] 3R_13234919_SNP [dm6]	T	C	4.032e^-4	0.853	INTRON Ace
2L	19209395	2L_19209395_SNP [dm3] 2L_19209395_SNP [dm6]	A	G	4.033e^-4	0.853	DOWNSTREAM drl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8667360	3R_8667360_SNP [dm3] 3R_12841638_SNP [dm6]	T	A	4.033e^-4	0.853	UTR_3_PRIME beat-Va DOWNSTREAM beat-Va
2R	19184001	2R_19184001_SNP [dm3] 2R_23296478_SNP [dm6]	C	A	4.040e^-4	0.853	INTERGENIC
3L	3769186	3L_3769186_SNP [dm3] 3L_3769186_SNP [dm6]	A	T	4.049e^-4	0.853	INTRON CG32264
2L	9806015	2L_9806015_SNP [dm3] 2L_9806015_SNP [dm6]	G	T	4.055e^-4	0.853	INTRON nAChRalpha6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20437888	3L_20437888_SNP [dm3] 3L_20444788_SNP [dm6]	A	C	4.057e^-4	0.853	UPSTREAM CG5910 INTRON CG5910
2L	10835285	2L_10835285_SNP [dm3] 2L_10835285_SNP [dm6]	T	G	4.058e^-4	0.853	INTRON Nos
3R	9157593	3R_9157593_SNP [dm3] 3R_13331871_SNP [dm6]	C	G	4.061e^-4	0.853	INTRON PK2-R2
X	10283431	X_10283431_SNP [dm3] X_10389398_SNP [dm6]	A	T	4.065e^-4	0.853	INTRON flw
2R	10309989	2R_10309989_SNP [dm3] 2R_14422484_SNP [dm6]	G	A	4.071e^-4	0.853	SYNONYMOUS_CODING CG17386	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12778592	3R_12778592_SNP [dm3] 3R_16952870_SNP [dm6]	T	C	4.072e^-4	0.853	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14377582	3R_14377582_SNP [dm3] 3R_18551860_SNP [dm6]	T	C	4.089e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8687223	3R_8687223_SNP [dm3] 3R_12861501_SNP [dm6]	G	A	4.098e^-4	0.853	INTERGENIC
3R	17758811	3R_17758811_SNP [dm3] 3R_21933089_SNP [dm6]	C	T	4.103e^-4	0.853	INTERGENIC
2L	5086425	2L_5086425_SNP [dm3] 2L_5086425_SNP [dm6]	C	T	4.103e^-4	0.853	INTRON pgant5
3L	10872497	3L_10872497_SNP [dm3] 3L_10879397_SNP [dm6]	C	G	4.105e^-4	0.853	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10310068	2R_10310068_SNP [dm3] 2R_14422563_SNP [dm6]	C	T	4.115e^-4	0.853	SYNONYMOUS_CODING CG17386	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23183352	3R_23183352_SNP [dm3] 3R_27357630_SNP [dm6]	G	C	4.115e^-4	0.853	INTRON CG42534
2L	9739142	2L_9739142_SNP [dm3] 2L_9739142_SNP [dm6]	T	A	4.119e^-4	0.853	INTRON Nckx30C
2L	6079853	2L_6079853_SNP [dm3] 2L_6079853_SNP [dm6]	A	T	4.122e^-4	0.853	DOWNSTREAM CR9162 INTRON CR44773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	18966587	2R_18966587_SNP [dm3] 2R_23079064_SNP [dm6]	T	A	4.124e^-4	0.853	UPSTREAM Art7 DOWNSTREAM CG43659 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	9079259	3R_9079259_SNP [dm3] 3R_13253537_SNP [dm6]	A	C	4.124e^-4	0.853	INTRON Ace
3R	22194647	3R_22194647_SNP [dm3] 3R_26368925_SNP [dm6]	C	A	4.132e^-4	0.853	INTERGENIC
2R	5232122	2R_5232122_SNP [dm3] 2R_9344617_SNP [dm6]	C	A	4.133e^-4	0.853	UPSTREAM Or45a INTRON CG13954 & 1 other
3R	9322796	3R_9322796_SNP [dm3] 3R_13497074_SNP [dm6]	A	G	4.137e^-4	0.853	INTERGENIC
2R	10934470	2R_10934470_SNP [dm3] 2R_15046965_SNP [dm6]	G	A	4.141e^-4	0.853	INTERGENIC
3L	14415897	3L_14415897_DEL [dm3] 3L_14422797_DEL [dm6]	ATA	A	4.162e^-4	0.853	INTRON bbg
2L	4914310	2L_4914310_SNP [dm3] 2L_4914310_SNP [dm6]	C	T	4.165e^-4	0.853	INTRON hoe1
X	4248694	X_4248694_SNP [dm3] X_4354661_SNP [dm6]	T	A	4.169e^-4	0.853	INTRON norpA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9055844	3R_9055844_SNP [dm3] 3R_13230122_SNP [dm6]	A	T	4.172e^-4	0.853	INTRON Ace
2L	13871367	2L_13871367_SNP [dm3] 2L_13871367_SNP [dm6]	C	T	4.180e^-4	0.853	INTRON CenG1A	TF binding site BDTNP1_TFBS_twi
2R	15677807	2R_15677807_SNP [dm3] 2R_19790302_SNP [dm6]	G	A	4.184e^-4	0.853	DOWNSTREAM CR45231 INTERGENIC
3L	7828128	3L_7828128_SNP [dm3] 3L_7835028_SNP [dm6]	T	G	4.193e^-4	0.853	INTRON Pdp1
3L	21575384	3L_21575384_SNP [dm3] 3L_21582284_SNP [dm6]	T	C	4.195e^-4	0.853	INTERGENIC
2L	4399452	2L_4399452_SNP [dm3] 2L_4399452_SNP [dm6]	C	A	4.202e^-4	0.853	NON_SYNONYMOUS_CODING l_2_k05819
2R	7041422	2R_7041422_SNP [dm3] 2R_11153917_SNP [dm6]	T	G	4.204e^-4	0.853	UPSTREAM CG13230 INTRON CG13229
3R	20197379	3R_20197379_SNP [dm3] 3R_24371657_SNP [dm6]	T	C	4.212e^-4	0.853	SYNONYMOUS_CODING CG17782 DOWNSTREAM CG13614
X	10283532	X_10283532_SNP [dm3] X_10389499_SNP [dm6]	A	G	4.224e^-4	0.853	INTRON flw
2L	5770881	2L_5770881_SNP [dm3] 2L_5770881_SNP [dm6]	G	A	4.226e^-4	0.853	NON_SYNONYMOUS_CODING CG9171 EXON CR31912	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_zfh1
2L	5581392	2L_5581392_SNP [dm3] 2L_5581392_SNP [dm6]	C	A	4.233e^-4	0.853	UPSTREAM CG14011 INTERGENIC
X	18150554	X_18150554_DEL [dm3] X_18256521_DEL [dm6]	GAATTG	G	4.244e^-4	0.853	DOWNSTREAM CR45613 INTERGENIC
2R	10711014	2R_10711014_SNP [dm3] 2R_14823509_SNP [dm6]	T	C	4.245e^-4	0.853	DOWNSTREAM CR45329 INTERGENIC
X	10116904	X_10116904_SNP [dm3] X_10222871_SNP [dm6]	A	G	4.245e^-4	0.853	UTR_5_PRIME CG34408 INTRON CG34408
2R	10634607	2R_10634607_SNP [dm3] 2R_14747102_SNP [dm6]	T	C	4.257e^-4	0.853	UPSTREAM AttA DOWNSTREAM Dro INTERGENIC	regulatory region REDfly_CRMs
2L	5790618	2L_5790618_SNP [dm3] 2L_5790618_SNP [dm6]	T	C	4.268e^-4	0.853	INTRON CG9171	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13096320	3L_13096320_SNP [dm3] 3L_13103220_SNP [dm6]	G	A	4.270e^-4	0.853	INTERGENIC
2L	4329979	2L_4329979_DEL [dm3] 2L_4329979_DEL [dm6]	AAATGGCGAAAGGTGGCTGA...	C	4.272e^-4	0.853	INTRON CG16857
3L	18181204	3L_18181204_SNP [dm3] 3L_18188104_SNP [dm6]	G	A	4.276e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13194764	3R_13194764_SNP [dm3] 3R_17369042_SNP [dm6]	T	A	4.285e^-4	0.853	INTERGENIC
X	18143064	X_18143064_SNP [dm3] X_18249031_SNP [dm6]	A	T	4.286e^-4	0.853	INTERGENIC
3R	21193247	3R_21193247_SNP [dm3] 3R_25367525_SNP [dm6]	T	C	4.286e^-4	0.853	INTRON Fur1
2L	9758861	2L_9758861_SNP [dm3] 2L_9758861_SNP [dm6]	A	C	4.287e^-4	0.853	INTRON zf30C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2L	4396918	2L_4396918_SNP [dm3] 2L_4396918_SNP [dm6]	T	A	4.288e^-4	0.853	INTRON l_2_k05819
2L	11354338	2L_11354338_SNP [dm3] 2L_11354338_SNP [dm6]	G	C	4.289e^-4	0.853	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	8690215	3R_8690215_SNP [dm3] 3R_12864493_SNP [dm6]	G	A	4.295e^-4	0.853	INTERGENIC
2R	19990601	2R_19990601_SNP [dm3] 2R_24103078_SNP [dm6]	A	G	4.301e^-4	0.853	NON_SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_cad
2R	9450862	2R_9450862_SNP [dm3] 2R_13563357_SNP [dm6]	G	C	4.313e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	17762939	3R_17762939_SNP [dm3] 3R_21937217_SNP [dm6]	G	A	4.318e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18723292	X_18723292_SNP [dm3] X_18829259_SNP [dm6]	T	A	4.324e^-4	0.853	UTR_3_PRIME CG42450
3R	9079013	3R_9079013_SNP [dm3] 3R_13253291_SNP [dm6]	G	A	4.332e^-4	0.853	INTRON Ace
3L	6576195	3L_6576195_SNP [dm3] 3L_6583095_SNP [dm6]	G	A	4.333e^-4	0.853	INTRON CG18769 & 1 other
2L	7599465	2L_7599465_SNP [dm3] 2L_7599465_SNP [dm6]	C	T	4.335e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9134063	2R_9134063_SNP [dm3] 2R_13246558_SNP [dm6]	A	G	4.335e^-4	0.853	UPSTREAM Mp20 INTERGENIC
2L	8731799	2L_8731799_SNP [dm3] 2L_8731799_SNP [dm6]	T	C	4.340e^-4	0.853	INTRON raw
3L	10592082	3L_10592082_SNP [dm3] 3L_10598982_SNP [dm6]	T	C	4.351e^-4	0.853	INTERGENIC
X	10771268	X_10771268_SNP [dm3] X_10877235_SNP [dm6]	G	C	4.357e^-4	0.853	DOWNSTREAM Ork1 INTRON CG1637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	1474128	2L_1474128_DEL [dm3] 2L_1474128_DEL [dm6]	AGTCAGCA	A	4.364e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9295228	3R_9295228_SNP [dm3] 3R_13469506_SNP [dm6]	C	A	4.373e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9128517	3R_9128517_SNP [dm3] 3R_13302795_SNP [dm6]	T	A	4.375e^-4	0.853	SPLICE_SITE_REGION CG32473 UPSTREAM CG43208 DOWNSTREAM CG8774 INTRON CG32473
2L	9763993	2L_9763993_SNP [dm3] 2L_9763993_SNP [dm6]	T	C	4.392e^-4	0.853	SYNONYMOUS_CODING und UPSTREAM Taf11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14106891	3L_14106891_SNP [dm3] 3L_14113791_SNP [dm6]	A	G	4.395e^-4	0.853	INTRON Sox21b
X	19502657	X_19502657_SNP [dm3] X_19608624_SNP [dm6]	T	C	4.395e^-4	0.853	INTRON CG14207	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3561617	3L_3561617_DEL [dm3] 3L_3561617_DEL [dm6]	AT	A	4.397e^-4	0.853	INTRON Eip63E
X	11177716	X_11177716_SNP [dm3] X_11283683_SNP [dm6]	C	T	4.404e^-4	0.853	INTRON CG44422
3L	12520170	3L_12520170_INS [dm3] 3L_12527070_INS [dm6]	T	TGTTTAAATGC...	4.405e^-4	0.853	UPSTREAM eIF-2beta DOWNSTREAM nst INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19344048	3L_19344048_SNP [dm3] 3L_19350948_SNP [dm6]	T	G	4.407e^-4	0.853	INTRON CG32206	TF binding site mE1_TFBS_cad
2R	17557497	2R_17557497_SNP [dm3] 2R_21669992_SNP [dm6]	A	T	4.410e^-4	0.853	UPSTREAM NC2alpha & 4 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7749863	3L_7749863_SNP [dm3] 3L_7756763_SNP [dm6]	A	C	4.411e^-4	0.853	UTR_5_PRIME CG32373 INTRON CG32373
2R	18450039	2R_18450039_SNP [dm3] 2R_22562534_SNP [dm6]	G	A	4.418e^-4	0.853	SYNONYMOUS_CODING CG11362 UPSTREAM px DOWNSTREAM dnr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	9065824	3R_9065824_SNP [dm3] 3R_13240102_SNP [dm6]	A	G	4.421e^-4	0.853	INTRON Ace
3R	27092724	3R_27092724_SNP [dm3] 3R_31267002_SNP [dm6]	T	C	4.425e^-4	0.853	INTRON ppk24
2L	13107218	2L_13107218_SNP [dm3] 2L_13107218_SNP [dm6]	G	C	4.432e^-4	0.853	INTRON CG5142
3R	16643841	3R_16643841_SNP [dm3] 3R_20818119_SNP [dm6]	A	T	4.437e^-4	0.853	INTRON CG17270
3R	18214875	3R_18214875_DEL [dm3] 3R_22389153_DEL [dm6]	TTAATTTTGT	T	4.438e^-4	0.853	UTR_5_PRIME CG5379 UPSTREAM CG5379 & 1 other	TF binding site BDTNP1_TFBS_dl
X	3522831	X_3522831_SNP [dm3] X_3628798_SNP [dm6]	T	C	4.440e^-4	0.853	INTRON AstA-R1
3R	21590666	3R_21590666_SNP [dm3] 3R_25764944_SNP [dm6]	T	G	4.442e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_inv
3R	8679884	3R_8679884_SNP [dm3] 3R_12854162_SNP [dm6]	A	G	4.445e^-4	0.853	INTERGENIC
2L	4328709	2L_4328709_SNP [dm3] 2L_4328709_SNP [dm6]	T	G	4.445e^-4	0.853	INTRON CG16857	TF binding site mE1_TFBS_chinmo
X	11027686	X_11027686_SNP [dm3] X_11133653_SNP [dm6]	G	A	4.447e^-4	0.853	SYNONYMOUS_CODING Klp10A	TF binding site mE1_TFBS_cad
2L	5774651	2L_5774651_SNP [dm3] 2L_5774651_SNP [dm6]	C	T	4.450e^-4	0.853	INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4381289	2R_4381289_SNP [dm3] 2R_8493784_SNP [dm6]	A	C	4.451e^-4	0.853	NON_SYNONYMOUS_CODING mtt INTRON mtt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6311175	3R_6311175_SNP [dm3] 3R_10485453_SNP [dm6]	T	C	4.452e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_cad
3L	16310702	3L_16310702_SNP [dm3] 3L_16317602_SNP [dm6]	A	T	4.453e^-4	0.853	UPSTREAM Nplp3 INTERGENIC
2L	11951421	2L_11951421_SNP [dm3] 2L_11951421_SNP [dm6]	G	T	4.453e^-4	0.853	DOWNSTREAM CR43314 INTERGENIC
2L	5790612	2L_5790612_SNP [dm3] 2L_5790612_SNP [dm6]	T	G	4.461e^-4	0.853	INTRON CG9171	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9157443	3R_9157443_INS [dm3] 3R_13331721_INS [dm6]	A	ATTGTA	4.461e^-4	0.853	INTRON PK2-R2
2R	17568274	2R_17568274_SNP [dm3] 2R_21680769_SNP [dm6]	C	T	4.465e^-4	0.853	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_chinmo
2L	9761542	2L_9761542_SNP [dm3] 2L_9761542_SNP [dm6]	G	A	4.467e^-4	0.853	DOWNSTREAM Taf11 INTRON zf30C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13141406	X_13141406_SNP [dm3] X_13247373_SNP [dm6]	A	T	4.470e^-4	0.853	INTRON mew
2R	10555639	2R_10555639_SNP [dm3] 2R_14668134_SNP [dm6]	C	T	4.471e^-4	0.853	UPSTREAM CG12866 INTERGENIC
2R	17384982	2R_17384982_SNP [dm3] 2R_21497477_SNP [dm6]	G	T	4.473e^-4	0.853	UPSTREAM Fkbp14 INTRON Fkbp14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	16309570	3L_16309570_SNP [dm3] 3L_16316470_SNP [dm6]	T	A	4.478e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3392586	3R_3392586_SNP [dm3] 3R_7566864_SNP [dm6]	C	A	4.490e^-4	0.853	INTERGENIC
3L	16302698	3L_16302698_SNP [dm3] 3L_16309598_SNP [dm6]	T	C	4.493e^-4	0.853	INTRON CR32160
X	3523425	X_3523425_SNP [dm3] X_3629392_SNP [dm6]	A	G	4.495e^-4	0.853	INTRON AstA-R1
2R	19646915	2R_19646915_SNP [dm3] 2R_23759392_SNP [dm6]	A	G	4.505e^-4	0.853	INTRON CG9850	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	19876230	X_19876230_SNP [dm3] X_19982197_SNP [dm6]	T	C	4.506e^-4	0.853	INTERGENIC
3R	9097825	3R_9097825_DEL [dm3] 3R_13272103_DEL [dm6]	TCAA	T	4.513e^-4	0.853	UPSTREAM CG8449 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3R	9097833	3R_9097833_DEL [dm3] 3R_13272111_DEL [dm6]	TAATTTATTCAAATTTTGAA...	T	4.513e^-4	0.853	UPSTREAM CG8449 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
X	10938828	X_10938828_SNP [dm3] X_11044795_SNP [dm6]	G	A	4.517e^-4	0.853	UTR_5_PRIME CG11160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6316198	3L_6316198_SNP [dm3] 3L_6323098_SNP [dm6]	G	T	4.526e^-4	0.853	DOWNSTREAM Or65a INTERGENIC
2L	12594183	2L_12594183_SNP [dm3] 2L_12594183_SNP [dm6]	C	T	4.527e^-4	0.853	SYNONYMOUS_CODING nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	4185867	2L_4185867_SNP [dm3] 2L_4185867_SNP [dm6]	G	A	4.528e^-4	0.853	DOWNSTREAM CG31961 INTRON CR44057	TF binding site BDTNP1_TFBS_twi
2L	4185883	2L_4185883_SNP [dm3] 2L_4185883_SNP [dm6]	G	C	4.528e^-4	0.853	DOWNSTREAM CG31961 INTRON CR44057	TF binding site BDTNP1_TFBS_twi
2R	4879377	2R_4879377_SNP [dm3] 2R_8991872_SNP [dm6]	T	C	4.529e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	20197953	3R_20197953_SNP [dm3] 3R_24372231_SNP [dm6]	T	A	4.531e^-4	0.853	INTRON CG17782	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4811639	3L_4811639_SNP [dm3] 3L_4811639_SNP [dm6]	T	C	4.532e^-4	0.853	SYNONYMOUS_CODING Dhc64C
3L	8734063	3L_8734063_SNP [dm3] 3L_8740963_SNP [dm6]	G	A	4.532e^-4	0.853	INTRON Prm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9943981	2L_9943981_SNP [dm3] 2L_9943981_SNP [dm6]	G	A	4.539e^-4	0.853	DOWNSTREAM CG4619 INTRON CG5853
3R	25438875	3R_25438875_SNP [dm3] 3R_29613153_SNP [dm6]	C	T	4.543e^-4	0.853	INTRON alph
2L	9497517	2L_9497517_SNP [dm3] 2L_9497517_SNP [dm6]	C	T	4.554e^-4	0.853	INTRON CG33298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10313159	2L_10313159_SNP [dm3] 2L_10313159_SNP [dm6]	T	C	4.555e^-4	0.853	SYNONYMOUS_CODING CG5384	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15931337	2R_15931337_SNP [dm3] 2R_20043832_SNP [dm6]	G	A	4.557e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_cad
2R	8844254	2R_8844254_SNP [dm3] 2R_12956749_SNP [dm6]	G	T	4.563e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_ttk
2L	6079500	2L_6079500_SNP [dm3] 2L_6079500_SNP [dm6]	T	C	4.563e^-4	0.853	UPSTREAM CR44773 EXON CR9162	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5284125	2R_5284125_SNP [dm3] 2R_9396620_SNP [dm6]	C	T	4.571e^-4	0.853	SYNONYMOUS_CODING CG8801 UPSTREAM CG8800	TF binding site mE1_TFBS_cad
3R	2467478	3R_2467478_SNP [dm3] 3R_6641756_SNP [dm6]	C	G	4.572e^-4	0.853	NON_SYNONYMOUS_CODING CG31286 DOWNSTREAM CG1315	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6778536	2L_6778536_SNP [dm3] 2L_6778536_SNP [dm6]	C	T	4.576e^-4	0.853	DOWNSTREAM nrv1 & 1 other INTERGENIC
3R	9074688	3R_9074688_SNP [dm3] 3R_13248966_SNP [dm6]	C	T	4.578e^-4	0.853	INTRON Ace
3L	3681608	3L_3681608_SNP [dm3] 3L_3681608_SNP [dm6]	G	T	4.590e^-4	0.853	INTERGENIC
3R	9268166	3R_9268166_SNP [dm3] 3R_13442444_SNP [dm6]	T	C	4.591e^-4	0.853	DOWNSTREAM CR45679 INTERGENIC
3R	9182410	3R_9182410_SNP [dm3] 3R_13356688_SNP [dm6]	T	A	4.593e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7193415	3R_7193415_SNP [dm3] 3R_11367693_SNP [dm6]	G	C	4.609e^-4	0.853	INTRON pros	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	19504976	X_19504976_SNP [dm3] X_19610943_SNP [dm6]	C	G	4.618e^-4	0.853	UTR_3_PRIME CG14207 UPSTREAM Tyler & 1 other
3L	2108112	3L_2108112_SNP [dm3] 3L_2108112_SNP [dm6]	T	C	4.630e^-4	0.853	INTRON sls	TF binding site mE1_TFBS_Trl
2R	8783760	2R_8783760_SNP [dm3] 2R_12896255_SNP [dm6]	T	C	4.631e^-4	0.853	INTRON vg	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.631e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.05437

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	6.3732	0.0413

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1624 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	6765765	3L_6765765_SNP [dm3] 3L_6772665_SNP [dm6]	C	T	1.746e^-7	0.249	INTERGENIC
3L	6766028	3L_6766028_SNP [dm3] 3L_6772928_SNP [dm6]	G	A	2.658e^-7	0.249	INTERGENIC
2L	1609677	2L_1609677_SNP [dm3] 2L_1609677_SNP [dm6]	G	T	1.501e^-6	0.722	INTRON CG31935	TF binding site mE1_TFBS_cad
3R	18521998	3R_18521998_SNP [dm3] 3R_22696276_SNP [dm6]	G	A	1.539e^-6	0.722	SYNONYMOUS_CODING cd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5809179	2L_5809179_SNP [dm3] 2L_5809179_SNP [dm6]	G	A	3.628e^-6	0.947	UPSTREAM CR44575 DOWNSTREAM CG11034 INTERGENIC
2R	8844260	2R_8844260_SNP [dm3] 2R_12956755_SNP [dm6]	A	C	4.330e^-6	0.947	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_ttk
2L	7923089	2L_7923089_SNP [dm3] 2L_7923089_SNP [dm6]	T	C	4.624e^-6	0.947	INTRON Snoo
2R	6757322	2R_6757322_SNP [dm3] 2R_10869817_SNP [dm6]	C	T	4.802e^-6	0.947	INTRON CG30015
2R	1129277	2R_1129277_SNP [dm3] 2R_5241772_SNP [dm6]	T	A	4.841e^-6	0.947	INTRON Nipped-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8844257	2R_8844257_SNP [dm3] 2R_12956752_SNP [dm6]	C	A	5.506e^-6	0.947	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_ttk
3R	20926879	3R_20926879_SNP [dm3] 3R_25101157_SNP [dm6]	C	A	5.844e^-6	0.947	NON_SYNONYMOUS_CODING CG33095 UTR_3_PRIME CG33096	TF binding site mE1_TFBS_sens
2R	9772188	2R_9772188_SNP [dm3] 2R_13884683_SNP [dm6]	G	A	6.057e^-6	0.947	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9251457	2L_9251457_SNP [dm3] 2L_9251457_SNP [dm6]	C	A	7.761e^-6	0.998	UPSTREAM aust DOWNSTREAM borr EXON CR43734
2L	7923109	2L_7923109_SNP [dm3] 2L_7923109_SNP [dm6]	C	T	8.229e^-6	0.998	INTRON Snoo
2R	12345809	2R_12345809_SNP [dm3] 2R_16458304_SNP [dm6]	T	C	8.548e^-6	0.998	INTERGENIC
2L	3993370	2L_3993370_SNP [dm3] 2L_3993370_SNP [dm6]	G	T	1.136e^-5	0.998	INTERGENIC
3R	12676548	3R_12676548_DEL [dm3] 3R_16850826_DEL [dm6]	GG	G	1.289e^-5	0.998	INTRON iab-8 EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_Trl
2L	9715710	2L_9715710_SNP [dm3] 2L_9715710_SNP [dm6]	T	C	1.296e^-5	0.998	UTR_3_PRIME Nckx30C DOWNSTREAM Nckx30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26072736	3R_26072736_SNP [dm3] 3R_30247014_SNP [dm6]	G	T	1.338e^-5	0.998	UPSTREAM CG9733 DOWNSTREAM tRNA:CR31383 INTERGENIC
2L	19617332	2L_19617332_SNP [dm3] 2L_19617332_SNP [dm6]	A	C	1.341e^-5	0.998	INTRON Lar
2L	12504432	2L_12504432_SNP [dm3] 2L_12504432_SNP [dm6]	A	G	1.541e^-5	0.998	UTR_5_PRIME bun INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
X	6469945	X_6469945_SNP [dm3] X_6575912_SNP [dm6]	G	A	1.615e^-5	0.998	INTRON CG34417
2R	8844254	2R_8844254_SNP [dm3] 2R_12956749_SNP [dm6]	G	T	1.618e^-5	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_ttk
2L	12568385	2L_12568385_SNP [dm3] 2L_12568385_SNP [dm6]	G	A	1.748e^-5	0.998	INTERGENIC
2R	6969944	2R_6969944_SNP [dm3] 2R_11082439_SNP [dm6]	G	A	1.761e^-5	0.998	INTRON luna
2R	4853327	2R_4853327_SNP [dm3] 2R_8965822_SNP [dm6]	T	G	1.903e^-5	0.998	INTRON CG8216
2L	5690242	2L_5690242_SNP [dm3] 2L_5690242_SNP [dm6]	G	A	1.986e^-5	0.998	UPSTREAM CR44819 DOWNSTREAM CR44820 INTERGENIC
2R	8844056	2R_8844056_SNP [dm3] 2R_12956551_SNP [dm6]	A	T	1.996e^-5	0.998	DOWNSTREAM CG13321 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	16981203	3L_16981203_SNP [dm3] 3L_16988103_SNP [dm6]	A	T	2.128e^-5	0.998	INTRON Exn
3R	2720642	3R_2720642_SNP [dm3] 3R_6894920_SNP [dm6]	T	C	2.270e^-5	0.998	DOWNSTREAM CR44932 INTERGENIC	regulatory region FlyBase REDfly_CRMs
X	3457239	X_3457239_SNP [dm3] X_3563206_SNP [dm6]	A	G	2.293e^-5	0.998	INTRON CG32791 & 1 other
3R	17690116	3R_17690116_SNP [dm3] 3R_21864394_SNP [dm6]	T	G	2.356e^-5	0.998	UPSTREAM lsn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4394391	2L_4394391_SNP [dm3] 2L_4394391_SNP [dm6]	T	A	2.359e^-5	0.998	SYNONYMOUS_CODING l_2_k05819 UPSTREAM CG3652	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	16032413	X_16032413_SNP [dm3] X_16138380_SNP [dm6]	T	C	2.443e^-5	0.998	INTRON disco-r	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	7199131	X_7199131_INS [dm3] X_7305098_INS [dm6]	T	TGTGTGT	2.496e^-5	0.998	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	15982035	3R_15982035_SNP [dm3] 3R_20156313_SNP [dm6]	C	T	2.528e^-5	0.998	INTERGENIC
2R	14137154	2R_14137154_SNP [dm3] 2R_18249649_SNP [dm6]	A	T	2.581e^-5	0.998	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	1236974	2R_1236974_SNP [dm3] 2R_5349469_SNP [dm6]	T	C	2.619e^-5	0.998	INTERGENIC	transposable element FlyBase
2R	8844052	2R_8844052_SNP [dm3] 2R_12956547_SNP [dm6]	A	T	2.649e^-5	0.998	DOWNSTREAM CG13321 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	6777934	2R_6777934_SNP [dm3] 2R_10890429_SNP [dm6]	C	T	2.669e^-5	0.998	SYNONYMOUS_CODING CG30020	TF binding site mE1_TFBS_inv
2R	8844246	2R_8844246_SNP [dm3] 2R_12956741_SNP [dm6]	A	C	2.755e^-5	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	5812385	2L_5812385_SNP [dm3] 2L_5812385_SNP [dm6]	C	T	2.796e^-5	0.998	DOWNSTREAM CG43307 INTERGENIC
X	21444190	X_21444190_INS [dm3] X_21573163_INS [dm6]	A	AA	2.853e^-5	0.998	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	2618930	2L_2618930_SNP [dm3] 2L_2618930_SNP [dm6]	T	A	2.920e^-5	0.998	INTERGENIC
2L	8117741	2L_8117741_SNP [dm3] 2L_8117741_SNP [dm6]	C	T	2.920e^-5	0.998	INTRON mon2
2R	2743219	2R_2743219_SNP [dm3] 2R_6855714_SNP [dm6]	C	T	2.954e^-5	0.998	INTERGENIC
3L	10230267	3L_10230267_SNP [dm3] 3L_10237167_SNP [dm6]	G	C	2.989e^-5	0.998	DOWNSTREAM CR44542 INTERGENIC
3R	21590671	3R_21590671_SNP [dm3] 3R_25764949_SNP [dm6]	G	A	3.048e^-5	0.998	INTERGENIC	TF binding site mE1_TFBS_inv
2R	8844266	2R_8844266_SNP [dm3] 2R_12956761_SNP [dm6]	G	C	3.051e^-5	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_ttk
2R	8844269	2R_8844269_SNP [dm3] 2R_12956764_SNP [dm6]	C	A	3.051e^-5	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_ttk
2R	8844270	2R_8844270_SNP [dm3] 2R_12956765_SNP [dm6]	T	A	3.080e^-5	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_ttk
3R	19237680	3R_19237680_SNP [dm3] 3R_23411958_SNP [dm6]	G	A	3.118e^-5	0.998	SYNONYMOUS_CODING CG4374	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4120682	2L_4120682_SNP [dm3] 2L_4120682_SNP [dm6]	A	G	3.136e^-5	0.998	NON_SYNONYMOUS_CODING Sr-CIII
X	16344746	X_16344746_SNP [dm3] X_16450713_SNP [dm6]	A	T	3.253e^-5	0.998	INTRON Rbp2
3R	21590657	3R_21590657_SNP [dm3] 3R_25764935_SNP [dm6]	A	G	3.258e^-5	0.998	INTERGENIC	TF binding site mE1_TFBS_inv
3L	1234268	3L_1234268_SNP [dm3] 3L_1234268_SNP [dm6]	C	T	3.338e^-5	0.998	SYNONYMOUS_CODING CG33966 DOWNSTREAM CG33965
2R	1080219	2R_1080219_SNP [dm3] 2R_5192714_SNP [dm6]	G	A	3.383e^-5	0.998	INTRON Nipped-A
2R	6970027	2R_6970027_SNP [dm3] 2R_11082522_SNP [dm6]	A	C	3.432e^-5	0.998	INTRON luna
2R	8844262	2R_8844262_INS [dm3] 2R_12956757_INS [dm6]	A	ACTGGATC	3.457e^-5	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_ttk
2L	4120701	2L_4120701_SNP [dm3] 2L_4120701_SNP [dm6]	G	C	3.635e^-5	0.998	NON_SYNONYMOUS_CODING Sr-CIII
2L	5676774	2L_5676774_SNP [dm3] 2L_5676774_SNP [dm6]	G	A	3.642e^-5	0.998	INTERGENIC
3L	10230195	3L_10230195_SNP [dm3] 3L_10237095_SNP [dm6]	C	A	3.666e^-5	0.998	DOWNSTREAM CR44542 INTERGENIC
3R	4692377	3R_4692377_SNP [dm3] 3R_8866655_SNP [dm6]	C	T	3.747e^-5	0.998	INTRON pyd
3R	24479788	3R_24479788_SNP [dm3] 3R_28654066_SNP [dm6]	T	G	3.810e^-5	0.998	INTERGENIC
3L	7144064	3L_7144064_SNP [dm3] 3L_7150964_SNP [dm6]	A	C	3.829e^-5	0.998	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20335715	3R_20335715_DEL [dm3] 3R_24509993_DEL [dm6]	AA	A	3.934e^-5	0.998	INTRON nAChRbeta2
2L	4095701	2L_4095701_SNP [dm3] 2L_4095701_SNP [dm6]	C	A	4.080e^-5	0.998	INTRON ed	TF binding site BDTNP1_TFBS_twi
2L	9289256	2L_9289256_SNP [dm3] 2L_9289256_SNP [dm6]	G	A	4.101e^-5	0.998	INTRON Ggamma30A
3L	3878473	3L_3878473_SNP [dm3] 3L_3878473_SNP [dm6]	G	A	4.110e^-5	0.998	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	9368277	2R_9368277_SNP [dm3] 2R_13480772_SNP [dm6]	T	C	4.190e^-5	0.998	INTRON arr
2R	8844063	2R_8844063_SNP [dm3] 2R_12956558_SNP [dm6]	A	G	4.264e^-5	0.998	DOWNSTREAM CG13321 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	5140297	3L_5140297_SNP [dm3] 3L_5147197_SNP [dm6]	T	C	4.290e^-5	0.998	SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	19232812	3R_19232812_SNP [dm3] 3R_23407090_SNP [dm6]	C	T	4.334e^-5	0.998	SYNONYMOUS_CODING Ir94e	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19232827	3R_19232827_SNP [dm3] 3R_23407105_SNP [dm6]	C	A	4.334e^-5	0.998	SYNONYMOUS_CODING Ir94e	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9289273	2L_9289273_SNP [dm3] 2L_9289273_SNP [dm6]	C	G	4.359e^-5	0.998	INTRON Ggamma30A
3L	14526017	3L_14526017_SNP [dm3] 3L_14532917_SNP [dm6]	C	T	4.363e^-5	0.998	INTRON bbg
2R	5231896	2R_5231896_SNP [dm3] 2R_9344391_SNP [dm6]	T	C	4.399e^-5	0.998	UPSTREAM Or45a INTRON CG13954 & 1 other
3R	21590666	3R_21590666_SNP [dm3] 3R_25764944_SNP [dm6]	T	G	4.664e^-5	0.998	INTERGENIC	TF binding site mE1_TFBS_inv
2L	8118325	2L_8118325_SNP [dm3] 2L_8118325_SNP [dm6]	C	T	4.829e^-5	0.998	SYNONYMOUS_CODING mon2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8844138	2R_8844138_SNP [dm3] 2R_12956633_SNP [dm6]	C	T	4.893e^-5	0.998	DOWNSTREAM CG13321 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8117890	2L_8117890_SNP [dm3] 2L_8117890_SNP [dm6]	T	A	4.973e^-5	0.998	INTRON mon2
2R	2087287	2R_2087287_SNP [dm3] 2R_6199782_SNP [dm6]	A	G	5.108e^-5	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7089376	3R_7089376_SNP [dm3] 3R_11263654_SNP [dm6]	G	T	5.165e^-5	0.998	INTERGENIC
2R	5125795	2R_5125795_SNP [dm3] 2R_9238290_SNP [dm6]	T	A	5.207e^-5	0.998	INTRON hig & 1 other
3R	13321061	3R_13321061_SNP [dm3] 3R_17495339_SNP [dm6]	A	G	5.260e^-5	0.998	INTRON Dscam3
2R	6969943	2R_6969943_SNP [dm3] 2R_11082438_SNP [dm6]	A	T	5.267e^-5	0.998	INTRON luna
2L	9715726	2L_9715726_SNP [dm3] 2L_9715726_SNP [dm6]	G	A	5.336e^-5	0.998	UTR_3_PRIME Nckx30C DOWNSTREAM Nckx30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8554346	3R_8554346_SNP [dm3] 3R_12728624_SNP [dm6]	G	A	5.347e^-5	0.998	DOWNSTREAM CR44231 INTERGENIC
2R	9450758	2R_9450758_SNP [dm3] 2R_13563253_SNP [dm6]	C	T	5.553e^-5	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	12568627	2L_12568627_SNP [dm3] 2L_12568627_SNP [dm6]	G	C	5.688e^-5	0.998	INTERGENIC
2R	6104599	2R_6104599_SNP [dm3] 2R_10217094_SNP [dm6]	G	A	5.774e^-5	0.998	INTRON Hr46 & 1 other
X	6470330	X_6470330_SNP [dm3] X_6576297_SNP [dm6]	A	C	5.807e^-5	0.998	INTRON CG34417
3L	5140526	3L_5140526_SNP [dm3] 3L_5147426_SNP [dm6]	C	A	5.866e^-5	0.998	INTRON Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	10751601	2L_10751601_SNP [dm3] 2L_10751601_SNP [dm6]	T	A	5.917e^-5	0.998	INTRON CG17124	TF binding site mE1_TFBS_cad
2L	4861523	2L_4861523_SNP [dm3] 2L_4861523_SNP [dm6]	C	A	5.946e^-5	0.998	INTRON pog
X	19994545	X_19994545_SNP [dm3] X_20100512_SNP [dm6]	C	T	6.044e^-5	0.998	INTERGENIC	transposable element FlyBase
3L	5140192	3L_5140192_SNP [dm3] 3L_5147092_SNP [dm6]	C	T	6.079e^-5	0.998	INTRON Aats-ala-m	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_sens
2R	9450556	2R_9450556_SNP [dm3] 2R_13563051_SNP [dm6]	C	T	6.171e^-5	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	1080299	2R_1080299_DEL [dm3] 2R_5192794_DEL [dm6]	GTTCG	G	6.381e^-5	0.998	INTRON Nipped-A
2L	8117743	2L_8117743_DEL [dm3] 2L_8117743_DEL [dm6]	TTG	C	6.424e^-5	0.998	INTRON mon2
2L	5690305	2L_5690305_SNP [dm3] 2L_5690305_SNP [dm6]	G	C	6.539e^-5	0.998	UPSTREAM CR44819 DOWNSTREAM CR44820 INTERGENIC
2L	11500270	2L_11500270_SNP [dm3] 2L_11500270_SNP [dm6]	C	T	6.555e^-5	0.998	INTERGENIC
3R	2009340	3R_2009340_SNP [dm3] 3R_6183618_SNP [dm6]	A	C	6.615e^-5	0.998	UPSTREAM CR31562 INTERGENIC
2R	8844165	2R_8844165_SNP [dm3] 2R_12956660_SNP [dm6]	G	A	6.685e^-5	0.998	DOWNSTREAM CG13321 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3600014	2L_3600014_SNP [dm3] 2L_3600014_SNP [dm6]	A	T	6.720e^-5	0.998	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6983251	2R_6983251_SNP [dm3] 2R_11095746_SNP [dm6]	A	T	6.734e^-5	0.998	INTRON luna	TF binding site BDTNP1_TFBS_twi
3L	9965291	3L_9965291_SNP [dm3] 3L_9972191_SNP [dm6]	G	A	6.795e^-5	0.998	UPSTREAM vnc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	6157287	3R_6157287_SNP [dm3] 3R_10331565_SNP [dm6]	C	T	6.813e^-5	0.998	UPSTREAM CG12818 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
X	9930661	X_9930661_SNP [dm3] X_10036628_SNP [dm6]	A	G	6.843e^-5	0.998	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	5125823	2R_5125823_SNP [dm3] 2R_9238318_SNP [dm6]	T	A	6.930e^-5	0.998	INTRON hig & 1 other
2R	1079972	2R_1079972_SNP [dm3] 2R_5192467_SNP [dm6]	T	C	6.995e^-5	0.998	INTRON Nipped-A
3L	13098257	3L_13098257_SNP [dm3] 3L_13105157_SNP [dm6]	T	A	7.072e^-5	0.998	INTERGENIC
3R	6670116	3R_6670116_SNP [dm3] 3R_10844394_SNP [dm6]	G	T	7.169e^-5	0.998	INTRON Cad86C
3R	18582657	3R_18582657_SNP [dm3] 3R_22756935_SNP [dm6]	C	G	7.302e^-5	0.998	INTRON Usp12-46 & 1 other
2R	5108960	2R_5108960_SNP [dm3] 2R_9221455_SNP [dm6]	T	C	7.303e^-5	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5441971	2L_5441971_SNP [dm3] 2L_5441971_SNP [dm6]	A	G	7.393e^-5	0.998	INTERGENIC
2L	8117891	2L_8117891_SNP [dm3] 2L_8117891_SNP [dm6]	A	T	7.618e^-5	0.998	INTRON mon2
3R	20002857	3R_20002857_INS [dm3] 3R_24177135_INS [dm6]	T	TA	7.624e^-5	0.998	INTRON CG13606
2R	10207856	2R_10207856_SNP [dm3] 2R_14320351_SNP [dm6]	T	G	7.644e^-5	0.998	INTRON Shroom
2L	19626051	2L_19626051_SNP [dm3] 2L_19626051_SNP [dm6]	G	T	7.770e^-5	0.998	INTRON Lar
X	9930686	X_9930686_SNP [dm3] X_10036653_SNP [dm6]	T	A	7.810e^-5	0.998	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	20875720	X_20875720_SNP [dm3] X_21004693_SNP [dm6]	T	G	8.040e^-5	0.998	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
3L	998432	3L_998432_SNP [dm3] 3L_998432_SNP [dm6]	C	T	8.233e^-5	0.998	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_HSA
2L	2512650	2L_2512650_SNP [dm3] 2L_2512650_SNP [dm6]	A	C	8.300e^-5	0.998	INTERGENIC
2R	7001784	2R_7001784_SNP [dm3] 2R_11114279_SNP [dm6]	T	C	8.326e^-5	0.998	INTRON luna
X	14902643	X_14902643_SNP [dm3] X_15008610_SNP [dm6]	C	T	8.367e^-5	0.998	UTR_3_PRIME eag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	1959823	3R_1959823_SNP [dm3] 3R_6134101_SNP [dm6]	G	T	8.440e^-5	0.998	INTERGENIC
X	10428455	X_10428455_SNP [dm3] X_10534422_SNP [dm6]	C	T	8.452e^-5	0.998	INTRON spri
2R	6116159	2R_6116159_SNP [dm3] 2R_10228654_SNP [dm6]	T	C	8.503e^-5	0.998	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	4053630	3L_4053630_SNP [dm3] 3L_4053630_SNP [dm6]	T	C	8.505e^-5	0.998	INTRON CG1136
2R	8844210	2R_8844210_SNP [dm3] 2R_12956705_SNP [dm6]	A	T	8.538e^-5	0.998	DOWNSTREAM CG13321 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	20345378	2L_20345378_SNP [dm3] 2L_20345378_SNP [dm6]	C	A	8.619e^-5	0.998	UTR_3_PRIME spir DOWNSTREAM spir INTRON spir	TF binding site mE1_TFBS_cad
2L	5018242	2L_5018242_SNP [dm3] 2L_5018242_SNP [dm6]	C	T	8.638e^-5	0.998	SYNONYMOUS_CODING vkg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4992089	2L_4992089_SNP [dm3] 2L_4992089_SNP [dm6]	T	G	8.669e^-5	0.998	UTR_3_PRIME CG34126 DOWNSTREAM Rtnl1
X	16032361	X_16032361_SNP [dm3] X_16138328_SNP [dm6]	C	T	8.759e^-5	0.998	INTRON disco-r
X	13321111	X_13321111_SNP [dm3] X_13427078_SNP [dm6]	C	G	8.768e^-5	0.998	INTERGENIC
3R	6154444	3R_6154444_SNP [dm3] 3R_10328722_SNP [dm6]	C	T	8.768e^-5	0.998	SYNONYMOUS_CODING Bruce	TF binding site mE1_TFBS_sens
X	12655726	X_12655726_SNP [dm3] X_12761693_SNP [dm6]	C	T	8.837e^-5	0.998	NON_SYNONYMOUS_CODING CG12717	TF binding site BDTNP1_TFBS_dl
3L	21202585	3L_21202585_SNP [dm3] 3L_21209485_SNP [dm6]	C	A	8.880e^-5	0.998	SYNONYMOUS_CODING CG10510 UPSTREAM CG10508	TF binding site mE1_TFBS_cad
2L	4378836	2L_4378836_SNP [dm3] 2L_4378836_SNP [dm6]	A	T	8.970e^-5	0.998	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14147741	2R_14147741_SNP [dm3] 2R_18260236_SNP [dm6]	C	T	9.035e^-5	0.998	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8844205	2R_8844205_SNP [dm3] 2R_12956700_SNP [dm6]	C	G	9.330e^-5	0.998	DOWNSTREAM CG13321 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
X	16032341	X_16032341_SNP [dm3] X_16138308_SNP [dm6]	G	T	9.494e^-5	0.998	INTRON disco-r
2R	1231087	2R_1231087_SNP [dm3] 2R_5343582_SNP [dm6]	G	C	9.596e^-5	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA transposable element FlyBase
2L	15281712	2L_15281712_SNP [dm3] 2L_15281712_SNP [dm6]	A	T	9.605e^-5	0.998	INTERGENIC
2R	5318782	2R_5318782_SNP [dm3] 2R_9431277_SNP [dm6]	C	T	9.650e^-5	0.998	INTRON Pdk
3R	14548843	3R_14548843_SNP [dm3] 3R_18723121_SNP [dm6]	T	C	9.677e^-5	0.998	UPSTREAM CG34283 INTRON Cha	transposable element FlyBase
3R	21590628	3R_21590628_SNP [dm3] 3R_25764906_SNP [dm6]	G	A	9.679e^-5	0.998	INTERGENIC	TF binding site mE1_TFBS_inv
X	5527019	X_5527019_DEL [dm3] X_5632986_DEL [dm6]	AGTAG	A	9.680e^-5	0.998	INTRON CG42492	TF binding site mE1_TFBS_HSA
X	5527025	X_5527025_DEL [dm3] X_5632992_DEL [dm6]	AGT	A	9.680e^-5	0.998	INTRON CG42492	TF binding site mE1_TFBS_HSA
3L	1035183	3L_1035183_SNP [dm3] 3L_1035183_SNP [dm6]	G	A	9.689e^-5	0.998	UPSTREAM CG9205 & 1 other INTRON CG9205	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
X	19994547	X_19994547_SNP [dm3] X_20100514_SNP [dm6]	A	T	9.774e^-5	0.998	INTERGENIC	transposable element FlyBase
2L	3339270	2L_3339270_SNP [dm3] 2L_3339270_SNP [dm6]	C	T	9.793e^-5	0.998	INTRON E23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
2L	5350261	2L_5350261_SNP [dm3] 2L_5350261_SNP [dm6]	G	T	9.898e^-5	0.998	INTRON nompC
3L	10230584	3L_10230584_SNP [dm3] 3L_10237484_SNP [dm6]	A	T	1.002e^-4	0.998	DOWNSTREAM CR44542 INTERGENIC
2R	6947524	2R_6947524_SNP [dm3] 2R_11060019_SNP [dm6]	T	G	1.003e^-4	0.998	INTRON luna
3R	3404640	3R_3404640_SNP [dm3] 3R_7578918_SNP [dm6]	T	C	1.012e^-4	0.998	INTRON CG34127
3L	3860013	3L_3860013_SNP [dm3] 3L_3860013_SNP [dm6]	A	T	1.020e^-4	0.998	INTRON Awh
3R	18322716	3R_18322716_SNP [dm3] 3R_22496994_SNP [dm6]	C	T	1.029e^-4	0.998	UPSTREAM Octbeta1R INTERGENIC	TF binding site mE1_TFBS_inv
X	12454012	X_12454012_DEL [dm3] X_12559979_DEL [dm6]	GTGGG	G	1.044e^-4	0.998	INTRON CG43921	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	11962826	X_11962826_INS [dm3] X_12068793_INS [dm6]	C	CT	1.059e^-4	0.998	INTRON CR43960 & 1 other EXON CR43961
3R	13166489	3R_13166489_SNP [dm3] 3R_17340767_SNP [dm6]	C	T	1.066e^-4	0.998	INTRON beat-IIa
2R	9429166	2R_9429166_SNP [dm3] 2R_13541661_SNP [dm6]	C	T	1.067e^-4	0.998	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	6821640	2L_6821640_SNP [dm3] 2L_6821640_SNP [dm6]	T	C	1.068e^-4	0.998	UPSTREAM sens-2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2596390	3L_2596390_SNP [dm3] 3L_2596390_SNP [dm6]	T	A	1.077e^-4	0.998	SYNONYMOUS_CODING CG16984 UTR_3_PRIME CG12182 DOWNSTREAM dos & 1 other	TF binding site mE1_TFBS_cad
3L	3732615	3L_3732615_SNP [dm3] 3L_3732615_SNP [dm6]	C	T	1.078e^-4	0.998	INTRON CG32264
3L	9868439	3L_9868439_INS [dm3] 3L_9875339_INS [dm6]	T	TGAAGCA	1.086e^-4	0.998	UPSTREAM CR45406 INTERGENIC
2L	20344691	2L_20344691_SNP [dm3] 2L_20344691_SNP [dm6]	T	C	1.089e^-4	0.998	UTR_3_PRIME spir INTRON spir
3R	7287829	3R_7287829_SNP [dm3] 3R_11462107_SNP [dm6]	C	T	1.096e^-4	0.998	INTRON CG17230
2L	18190294	2L_18190294_SNP [dm3] 2L_18190294_SNP [dm6]	A	T	1.097e^-4	0.998	INTRON CG42750
X	9621621	X_9621621_SNP [dm3] X_9727588_SNP [dm6]	G	A	1.101e^-4	0.998	DOWNSTREAM CR43498 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23723205	3R_23723205_SNP [dm3] 3R_27897483_SNP [dm6]	C	G	1.103e^-4	0.998	INTRON CG34353
2L	16428928	2L_16428928_SNP [dm3] 2L_16428928_SNP [dm6]	A	G	1.114e^-4	0.998	INTRON CG5888	TF binding site mE1_TFBS_HSA
X	11147095	X_11147095_SNP [dm3] X_11253062_SNP [dm6]	G	A	1.124e^-4	0.998	INTRON CG44422
2R	11983647	2R_11983647_SNP [dm3] 2R_16096142_SNP [dm6]	T	C	1.134e^-4	0.998	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	14881585	3R_14881585_SNP [dm3] 3R_19055863_SNP [dm6]	C	T	1.142e^-4	0.998	INTRON cdi
3R	18442029	3R_18442029_SNP [dm3] 3R_22616307_SNP [dm6]	A	G	1.152e^-4	0.998	SYNONYMOUS_CODING EF-G2 UTR_3_PRIME EF-G2 UPSTREAM CG31161
X	8470047	X_8470047_SNP [dm3] X_8576014_SNP [dm6]	A	C	1.163e^-4	0.998	INTRON CG12065
2R	5318783	2R_5318783_SNP [dm3] 2R_9431278_SNP [dm6]	T	C	1.167e^-4	0.998	INTRON Pdk
2L	8073593	2L_8073593_SNP [dm3] 2L_8073593_SNP [dm6]	G	A	1.169e^-4	0.998	SYNONYMOUS_CODING Trf UPSTREAM MED20 DOWNSTREAM Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	18854888	3R_18854888_SNP [dm3] 3R_23029166_SNP [dm6]	G	C	1.176e^-4	0.998	INTERGENIC	regulatory region REDfly_CRMs
2L	19626027	2L_19626027_SNP [dm3] 2L_19626027_SNP [dm6]	A	G	1.181e^-4	0.998	INTRON Lar
3R	24583713	3R_24583713_SNP [dm3] 3R_28757991_SNP [dm6]	A	G	1.183e^-4	0.998	SYNONYMOUS_CODING aqrs
X	12655640	X_12655640_SNP [dm3] X_12761607_SNP [dm6]	T	C	1.185e^-4	0.998	SYNONYMOUS_CODING CG12717 UPSTREAM ade5	TF binding site BDTNP1_TFBS_dl
3L	10820411	3L_10820411_SNP [dm3] 3L_10827311_SNP [dm6]	T	C	1.197e^-4	0.998	INTERGENIC
2R	8843495	2R_8843495_SNP [dm3] 2R_12955990_SNP [dm6]	C	T	1.205e^-4	0.998	DOWNSTREAM CG13321 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	1080257	2R_1080257_DEL [dm3] 2R_5192752_DEL [dm6]	CAATCGACAGCTTACTGCAT...	C	1.211e^-4	0.998	INTRON Nipped-A
X	15815650	X_15815650_SNP [dm3] X_15921617_SNP [dm6]	T	G	1.215e^-4	0.998	UPSTREAM CG8916 DOWNSTREAM CG8909 INTERGENIC
3R	25065716	3R_25065716_SNP [dm3] 3R_29239994_SNP [dm6]	G	A	1.218e^-4	0.998	DOWNSTREAM CG31445 INTRON CG31427
2L	1611015	2L_1611015_SNP [dm3] 2L_1611015_SNP [dm6]	G	C	1.219e^-4	0.998	SYNONYMOUS_CODING CG31935 UPSTREAM CG14352	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	18920849	2L_18920849_SNP [dm3] 2L_18920849_SNP [dm6]	C	G	1.220e^-4	0.998	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	11501583	2L_11501583_SNP [dm3] 2L_11501583_SNP [dm6]	G	A	1.224e^-4	0.998	UPSTREAM spz4 INTERGENIC
2L	14510354	2L_14510354_SNP [dm3] 2L_14510354_SNP [dm6]	A	G	1.227e^-4	0.998	EXON CR45693
2R	1196802	2R_1196802_SNP [dm3] 2R_5309297_SNP [dm6]	T	A	1.241e^-4	0.998	INTRON sxc	transposable element FlyBase
2R	1207430	2R_1207430_SNP [dm3] 2R_5319925_SNP [dm6]	A	G	1.269e^-4	0.998	INTRON sxc	transposable element FlyBase
X	2178804	X_2178804_SNP [dm3] X_2284771_SNP [dm6]	T	C	1.272e^-4	0.998	INTRON CG2865
3L	9868488	3L_9868488_SNP [dm3] 3L_9875388_SNP [dm6]	A	G	1.287e^-4	0.998	UPSTREAM CR45406 INTERGENIC
X	9634804	X_9634804_DEL [dm3] X_9740771_DEL [dm6]	GG	G	1.297e^-4	0.998	INTRON Sp1	TF binding site BDTNP1_TFBS_twi
3R	1979507	3R_1979507_SNP [dm3] 3R_6153785_SNP [dm6]	T	C	1.306e^-4	0.998	INTRON CG31559
2L	3926891	2L_3926891_SNP [dm3] 2L_3926891_SNP [dm6]	C	A	1.317e^-4	0.998	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	14292961	X_14292961_SNP [dm3] X_14398928_SNP [dm6]	G	A	1.322e^-4	0.998	INTRON dpr8
3R	26637274	3R_26637274_SNP [dm3] 3R_30811552_SNP [dm6]	A	G	1.343e^-4	0.998	INTRON cindr
3R	22309297	3R_22309297_SNP [dm3] 3R_26483575_SNP [dm6]	C	A	1.350e^-4	0.998	INTRON plum
2R	5284125	2R_5284125_SNP [dm3] 2R_9396620_SNP [dm6]	C	T	1.368e^-4	0.998	SYNONYMOUS_CODING CG8801 UPSTREAM CG8800	TF binding site mE1_TFBS_cad
3R	24155476	3R_24155476_SNP [dm3] 3R_28329754_SNP [dm6]	C	G	1.382e^-4	0.998	INTRON larp
2L	3926840	2L_3926840_SNP [dm3] 2L_3926840_SNP [dm6]	G	C	1.383e^-4	0.998	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	20684518	3R_20684518_SNP [dm3] 3R_24858796_SNP [dm6]	T	C	1.389e^-4	0.998	SPLICE_SITE_REGION ppk22 DOWNSTREAM ppk22 INTRON ppk22
2R	5739763	2R_5739763_SNP [dm3] 2R_9852258_SNP [dm6]	C	G	1.406e^-4	0.998	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2778433	3L_2778433_SNP [dm3] 3L_2778433_SNP [dm6]	A	G	1.410e^-4	0.998	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	6969961	2R_6969961_SNP [dm3] 2R_11082456_SNP [dm6]	T	A	1.417e^-4	0.998	INTRON luna
2L	5871333	2L_5871333_SNP [dm3] 2L_5871333_SNP [dm6]	T	C	1.418e^-4	0.998	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	6767731	2R_6767731_SNP [dm3] 2R_10880226_SNP [dm6]	T	A	1.420e^-4	0.998	UTR_5_PRIME Pex6 UPSTREAM Taf5 INTRON Pex6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
2R	6769708	2R_6769708_SNP [dm3] 2R_10882203_SNP [dm6]	C	T	1.420e^-4	0.998	SYNONYMOUS_CODING Pex6	TF binding site mE1_TFBS_sens
3R	25407869	3R_25407869_SNP [dm3] 3R_29582147_SNP [dm6]	C	T	1.427e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	8815733	2R_8815733_SNP [dm3] 2R_12928228_SNP [dm6]	A	G	1.430e^-4	0.998	UPSTREAM sug INTRON sug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16981185	3L_16981185_SNP [dm3] 3L_16988085_SNP [dm6]	T	C	1.434e^-4	0.998	INTRON Exn
3L	11543174	3L_11543174_SNP [dm3] 3L_11550074_SNP [dm6]	G	A	1.450e^-4	0.998	INTRON Mob2
2L	19626087	2L_19626087_SNP [dm3] 2L_19626087_SNP [dm6]	G	C	1.454e^-4	0.998	INTRON Lar
2R	19894337	2R_19894337_SNP [dm3] 2R_24006814_SNP [dm6]	A	G	1.456e^-4	0.998	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20839703	3R_20839703_SNP [dm3] 3R_25013981_SNP [dm6]	C	T	1.463e^-4	0.998	SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6761046	2R_6761046_SNP [dm3] 2R_10873541_SNP [dm6]	T	A	1.465e^-4	0.998	INTRON CG30015	TF binding site BDTNP1_TFBS_dl
X	11075556	X_11075556_SNP [dm3] X_11181523_SNP [dm6]	G	T	1.482e^-4	0.998	INTERGENIC
2R	6776241	2R_6776241_SNP [dm3] 2R_10888736_SNP [dm6]	G	A	1.494e^-4	0.998	SYNONYMOUS_CODING CG30020	TF binding site mE1_TFBS_cad
2L	4120456	2L_4120456_SNP [dm3] 2L_4120456_SNP [dm6]	T	C	1.495e^-4	0.998	SYNONYMOUS_CODING Sr-CIII
3R	21353362	3R_21353362_SNP [dm3] 3R_25527640_SNP [dm6]	T	A	1.499e^-4	0.998	INTRON msi
2R	2082775	2R_2082775_SNP [dm3] 2R_6195270_SNP [dm6]	C	A	1.502e^-4	0.998	INTRON Ptr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
X	16343490	X_16343490_SNP [dm3] X_16449457_SNP [dm6]	G	A	1.503e^-4	0.998	UTR_5_PRIME Rbp2 INTRON Rbp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10025905	3L_10025905_SNP [dm3] 3L_10032805_SNP [dm6]	A	G	1.506e^-4	0.998	INTRON dpr6
3L	17825136	3L_17825136_SNP [dm3] 3L_17832036_SNP [dm6]	T	C	1.507e^-4	0.998	INTRON Grd	TF binding site mE1_TFBS_cad
3L	17825409	3L_17825409_SNP [dm3] 3L_17832309_SNP [dm6]	C	A	1.507e^-4	0.998	DOWNSTREAM CG32188 INTRON Grd
3R	24352292	3R_24352292_SNP [dm3] 3R_28526570_SNP [dm6]	A	C	1.510e^-4	0.998	NON_SYNONYMOUS_CODING Ppn	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10444368	2R_10444368_SNP [dm3] 2R_14556863_SNP [dm6]	C	T	1.522e^-4	0.998	INTRON ttv
2R	13060977	2R_13060977_SNP [dm3] 2R_17173472_SNP [dm6]	C	T	1.528e^-4	0.998	INTERGENIC
3R	17763210	3R_17763210_INS [dm3] 3R_21937488_INS [dm6]	T	TC	1.531e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16920100	2R_16920100_SNP [dm3] 2R_21032595_SNP [dm6]	G	A	1.538e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2780970	3L_2780970_SNP [dm3] 3L_2780970_SNP [dm6]	T	A	1.546e^-4	0.998	UTR_5_PRIME mRpS35 DOWNSTREAM Atg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	862863	2L_862863_SNP [dm3] 2L_862863_SNP [dm6]	G	A	1.566e^-4	0.998	SYNONYMOUS_CODING aru	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	742491	2L_742491_SNP [dm3] 2L_742491_SNP [dm6]	A	C	1.573e^-4	0.998	UPSTREAM Eaat2 INTRON Eaat2
X	3457216	X_3457216_DEL [dm3] X_3563183_DEL [dm6]	ACATA	A	1.586e^-4	0.998	INTRON CG32791 & 1 other
2L	1611882	2L_1611882_SNP [dm3] 2L_1611882_SNP [dm6]	G	A	1.597e^-4	0.998	UPSTREAM CG31935 DOWNSTREAM RFeSP INTRON CG14352	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	10503229	2R_10503229_SNP [dm3] 2R_14615724_SNP [dm6]	C	T	1.599e^-4	0.998	SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19240259	3L_19240259_SNP [dm3] 3L_19247159_SNP [dm6]	A	G	1.608e^-4	0.998	INTERGENIC
2L	3332616	2L_3332616_SNP [dm3] 2L_3332616_SNP [dm6]	T	C	1.613e^-4	0.998	NON_SYNONYMOUS_CODING CG3285 UPSTREAM CG15408	TF binding site mE1_TFBS_cad
2R	19991329	2R_19991329_SNP [dm3] 2R_24103806_SNP [dm6]	T	C	1.627e^-4	0.998	SYNONYMOUS_CODING enok
2R	1230754	2R_1230754_SNP [dm3] 2R_5343249_SNP [dm6]	C	T	1.630e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	10456691	2L_10456691_DEL [dm3] 2L_10456691_DEL [dm6]	AA	A	1.666e^-4	0.998	UPSTREAM CG5322 & 1 other INTRON CG5322
3L	1570483	3L_1570483_DEL [dm3] 3L_1570483_DEL [dm6]	AA	A	1.668e^-4	0.998	INTRON CG12004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21590697	3R_21590697_DEL [dm3] 3R_25764975_DEL [dm6]	AAATAAATCTCA...	A	1.669e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_inv
2R	10503372	2R_10503372_SNP [dm3] 2R_14615867_SNP [dm6]	C	T	1.670e^-4	0.998	NON_SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20327716	2L_20327716_SNP [dm3] 2L_20327716_SNP [dm6]	T	A	1.677e^-4	0.998	INTRON spir
3R	27248304	3R_27248304_SNP [dm3] 3R_31422582_SNP [dm6]	C	T	1.678e^-4	0.998	INTRON Gprk2
3R	7287858	3R_7287858_SNP [dm3] 3R_11462136_SNP [dm6]	A	G	1.689e^-4	0.998	INTRON CG17230
3L	9807214	3L_9807214_SNP [dm3] 3L_9814114_SNP [dm6]	A	C	1.701e^-4	0.998	INTRON CG43897
X	8442916	X_8442916_SNP [dm3] X_8548883_SNP [dm6]	A	T	1.717e^-4	0.998	INTRON Nrg	TF binding site BDTNP1_TFBS_dl
2L	4965854	2L_4965854_SNP [dm3] 2L_4965854_SNP [dm6]	T	A	1.730e^-4	0.998	UPSTREAM CR43824 DOWNSTREAM Trip1 & 1 other INTRON CG34125	TF binding site mE1_TFBS_cad
2L	12568598	2L_12568598_SNP [dm3] 2L_12568598_SNP [dm6]	C	A	1.733e^-4	0.998	INTERGENIC
X	8335510	X_8335510_SNP [dm3] X_8441477_SNP [dm6]	A	G	1.739e^-4	0.998	SYNONYMOUS_CODING CG12123 DOWNSTREAM CG1440	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	9278749	2L_9278749_SNP [dm3] 2L_9278749_SNP [dm6]	T	C	1.740e^-4	0.998	INTRON Ggamma30A
3R	20838893	3R_20838893_SNP [dm3] 3R_25013171_SNP [dm6]	G	A	1.745e^-4	0.998	SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6968760	2R_6968760_SNP [dm3] 2R_11081255_SNP [dm6]	A	G	1.746e^-4	0.998	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20002832	3R_20002832_DEL [dm3] 3R_24177110_DEL [dm6]	ATT	A	1.746e^-4	0.998	INTRON CG13606
3L	18916213	3L_18916213_SNP [dm3] 3L_18923113_SNP [dm6]	A	C	1.749e^-4	0.998	UTR_3_PRIME CG32204
3R	19422202	3R_19422202_SNP [dm3] 3R_23596480_SNP [dm6]	A	C	1.749e^-4	0.998	UPSTREAM CG16723 DOWNSTREAM CG10183 INTERGENIC
3L	7846525	3L_7846525_SNP [dm3] 3L_7853425_SNP [dm6]	G	T	1.753e^-4	0.998	UTR_5_PRIME Pdp1 INTRON Pdp1
X	9930687	X_9930687_SNP [dm3] X_10036654_SNP [dm6]	G	T	1.755e^-4	0.998	SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6157002	3R_6157002_INS [dm3] 3R_10331280_INS [dm6]	G	GG	1.761e^-4	0.998	UTR_5_PRIME Bruce UPSTREAM CG12818	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
2L	8327010	2L_8327010_SNP [dm3] 2L_8327010_SNP [dm6]	T	A	1.763e^-4	0.998	UPSTREAM CG14275 INTERGENIC
2L	11504200	2L_11504200_SNP [dm3] 2L_11504200_SNP [dm6]	T	A	1.768e^-4	0.998	INTRON spz4
2L	21251807	2L_21251807_SNP [dm3] 2L_21251807_SNP [dm6]	G	A	1.773e^-4	0.998	INTRON Hr39	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	14292996	X_14292996_SNP [dm3] X_14398963_SNP [dm6]	A	G	1.785e^-4	0.998	INTRON dpr8
2R	15940207	2R_15940207_SNP [dm3] 2R_20052702_SNP [dm6]	C	T	1.786e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6982861	2R_6982861_SNP [dm3] 2R_11095356_SNP [dm6]	T	A	1.789e^-4	0.998	INTRON luna
2L	2622347	2L_2622347_SNP [dm3] 2L_2622347_SNP [dm6]	G	T	1.793e^-4	0.998	INTERGENIC
X	8093290	X_8093290_SNP [dm3] X_8199257_SNP [dm6]	A	G	1.800e^-4	0.998	INTRON sdt
2L	4095702	2L_4095702_SNP [dm3] 2L_4095702_SNP [dm6]	T	C	1.801e^-4	0.998	INTRON ed	TF binding site BDTNP1_TFBS_twi
2L	19626050	2L_19626050_SNP [dm3] 2L_19626050_SNP [dm6]	T	C	1.803e^-4	0.998	INTRON Lar
2R	18897555	2R_18897555_SNP [dm3] 2R_23010032_SNP [dm6]	A	C	1.817e^-4	0.998	INTRON twi	TF binding site mE1_TFBS_chinmo
2R	19133600	2R_19133600_SNP [dm3] 2R_23246077_SNP [dm6]	A	C	1.817e^-4	0.998	UPSTREAM yip3 DOWNSTREAM RpL22-like INTERGENIC
3R	25201055	3R_25201055_SNP [dm3] 3R_29375333_SNP [dm6]	C	T	1.826e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2R	17607556	2R_17607556_SNP [dm3] 2R_21720051_SNP [dm6]	T	C	1.829e^-4	0.998	UPSTREAM LBR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	14057507	2L_14057507_INS [dm3] 2L_14057507_INS [dm6]	T	TGCCT	1.833e^-4	0.998	INTRON nAChRalpha5
3R	21590636	3R_21590636_SNP [dm3] 3R_25764914_SNP [dm6]	C	A	1.834e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_inv
3L	21187594	3L_21187594_SNP [dm3] 3L_21194494_SNP [dm6]	A	G	1.836e^-4	0.998	DOWNSTREAM park INTERGENIC
2R	6716272	2R_6716272_SNP [dm3] 2R_10828767_SNP [dm6]	C	T	1.837e^-4	0.998	SYNONYMOUS_CODING CG12344
2R	8969000	2R_8969000_SNP [dm3] 2R_13081495_SNP [dm6]	C	T	1.843e^-4	0.998	INTERGENIC
X	4759610	X_4759610_INS [dm3] X_4865577_INS [dm6]	G	GTG	1.847e^-4	0.998	INTRON CG42594
X	14297345	X_14297345_SNP [dm3] X_14403312_SNP [dm6]	G	A	1.847e^-4	0.998	INTRON dpr8
2R	6103002	2R_6103002_SNP [dm3] 2R_10215497_SNP [dm6]	A	G	1.849e^-4	0.998	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	8844134	2R_8844134_SNP [dm3] 2R_12956629_SNP [dm6]	T	G	1.853e^-4	0.998	DOWNSTREAM CG13321 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14921116	3L_14921116_SNP [dm3] 3L_14928016_SNP [dm6]	T	G	1.855e^-4	0.998	INTRON DCX-EMAP
2R	10526341	2R_10526341_SNP [dm3] 2R_14638836_SNP [dm6]	C	T	1.858e^-4	0.998	UTR_3_PRIME CG43236 UPSTREAM CG42715 DOWNSTREAM CG43236	TF binding site mE1_TFBS_inv
2R	10434235	2R_10434235_SNP [dm3] 2R_14546730_SNP [dm6]	A	T	1.869e^-4	0.998	UPSTREAM CG30076 INTRON ttv
2L	4393019	2L_4393019_SNP [dm3] 2L_4393019_SNP [dm6]	T	C	1.884e^-4	0.998	DOWNSTREAM Tps1 INTRON CG3652	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9068891	3R_9068891_SNP [dm3] 3R_13243169_SNP [dm6]	A	G	1.890e^-4	0.998	INTRON Ace
3L	16981365	3L_16981365_SNP [dm3] 3L_16988265_SNP [dm6]	C	A	1.896e^-4	0.998	INTRON Exn
3R	9566198	3R_9566198_SNP [dm3] 3R_13740476_SNP [dm6]	A	G	1.900e^-4	0.998	INTRON CG34383
2R	20020785	2R_20020785_SNP [dm3] 2R_24133262_SNP [dm6]	T	C	1.904e^-4	0.998	UTR_5_PRIME tamo UPSTREAM Zfrp8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	2946267	2L_2946267_SNP [dm3] 2L_2946267_SNP [dm6]	C	T	1.909e^-4	0.998	UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_cad
3L	2780284	3L_2780284_SNP [dm3] 3L_2780284_SNP [dm6]	T	G	1.911e^-4	0.998	SYNONYMOUS_CODING Atg2 UPSTREAM mRpS35	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14678270	2R_14678270_SNP [dm3] 2R_18790765_SNP [dm6]	T	C	1.919e^-4	0.998	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5616809	2L_5616809_SNP [dm3] 2L_5616809_SNP [dm6]	C	G	1.922e^-4	0.998	INTRON CG14010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26605267	3R_26605267_SNP [dm3] 3R_30779545_SNP [dm6]	T	C	1.934e^-4	0.998	INTRON zfh1
3L	8989955	3L_8989955_SNP [dm3] 3L_8996855_SNP [dm6]	C	A	1.938e^-4	0.998	SPLICE_SITE_REGION smg UTR_5_PRIME smg UPSTREAM smg INTRON smg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	12636870	2L_12636870_SNP [dm3] 2L_12636870_SNP [dm6]	G	A	1.947e^-4	0.998	INTRON Ref2
3R	14521611	3R_14521611_SNP [dm3] 3R_18695889_SNP [dm6]	A	C	1.962e^-4	0.998	DOWNSTREAM CG34282 INTERGENIC
2R	6761091	2R_6761091_SNP [dm3] 2R_10873586_SNP [dm6]	C	A	1.975e^-4	0.998	INTRON CG30015	TF binding site BDTNP1_TFBS_dl
3R	20684627	3R_20684627_SNP [dm3] 3R_24858905_SNP [dm6]	C	A	1.977e^-4	0.998	SYNONYMOUS_CODING ppk22 DOWNSTREAM ppk22 & 1 other
2R	1147301	2R_1147301_SNP [dm3] 2R_5259796_SNP [dm6]	T	A	1.987e^-4	0.998	SPLICE_SITE_REGION d4 INTRON d4	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	20684606	3R_20684606_SNP [dm3] 3R_24858884_SNP [dm6]	C	T	2.006e^-4	0.998	SYNONYMOUS_CODING ppk22 DOWNSTREAM ppk22
3L	16325335	3L_16325335_SNP [dm3] 3L_16332235_SNP [dm6]	A	T	2.025e^-4	0.998	NON_SYNONYMOUS_CODING retinin DOWNSTREAM CG33060	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4774276	2R_4774276_SNP [dm3] 2R_8886771_SNP [dm6]	A	T	2.029e^-4	0.998	SYNONYMOUS_CODING RyR	TF binding site mE1_TFBS_cad
3R	26071101	3R_26071101_SNP [dm3] 3R_30245379_SNP [dm6]	G	T	2.029e^-4	0.998	INTRON CG9733
2R	6970468	2R_6970468_SNP [dm3] 2R_11082963_SNP [dm6]	C	T	2.032e^-4	0.998	INTRON luna
2L	14003921	2L_14003921_SNP [dm3] 2L_14003921_SNP [dm6]	C	A	2.046e^-4	0.998	INTERGENIC
2L	3599989	2L_3599989_SNP [dm3] 2L_3599989_SNP [dm6]	A	C	2.048e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24199553	3R_24199553_SNP [dm3] 3R_28373831_SNP [dm6]	G	A	2.052e^-4	0.998	INTERGENIC
3L	14912171	3L_14912171_SNP [dm3] 3L_14919071_SNP [dm6]	T	C	2.067e^-4	0.998	INTRON DCX-EMAP
X	1875496	X_1875496_SNP [dm3] X_1981463_SNP [dm6]	T	G	2.072e^-4	0.998	INTRON Hr4	TF binding site mE1_TFBS_chinmo
2R	6777949	2R_6777949_SNP [dm3] 2R_10890444_SNP [dm6]	T	C	2.072e^-4	0.998	SYNONYMOUS_CODING CG30020	TF binding site mE1_TFBS_inv
2L	11498976	2L_11498976_SNP [dm3] 2L_11498976_SNP [dm6]	C	T	2.074e^-4	0.998	UPSTREAM CG6488 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	773127	3L_773127_INS [dm3] 3L_773127_INS [dm6]	G	GG	2.080e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16907104	2R_16907104_SNP [dm3] 2R_21019599_SNP [dm6]	T	C	2.083e^-4	0.998	INTRON RIC-3
3L	9807193	3L_9807193_SNP [dm3] 3L_9814093_SNP [dm6]	A	C	2.093e^-4	0.998	INTRON CG43897
3R	24420280	3R_24420280_SNP [dm3] 3R_28594558_SNP [dm6]	G	T	2.093e^-4	0.998	DOWNSTREAM CR43440 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	11498763	2L_11498763_SNP [dm3] 2L_11498763_SNP [dm6]	A	C	2.097e^-4	0.998	INTRON CG6488	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4215605	3L_4215605_SNP [dm3] 3L_4215605_SNP [dm6]	C	T	2.099e^-4	0.998	SYNONYMOUS_CODING Cpr64Ad INTRON CG43367
2L	3926899	2L_3926899_SNP [dm3] 2L_3926899_SNP [dm6]	C	T	2.099e^-4	0.998	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	1370622	2R_1370622_SNP [dm3] 2R_5483117_SNP [dm6]	T	G	2.100e^-4	0.998	INTRON CG30440	transposable element FlyBase
3L	4319280	3L_4319280_SNP [dm3] 3L_4319280_SNP [dm6]	A	G	2.119e^-4	0.998	DOWNSTREAM Claspin INTRON CG32250	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13752788	X_13752788_SNP [dm3] X_13858755_SNP [dm6]	T	C	2.121e^-4	0.998	UTR_3_PRIME mamo INTRON mamo
3R	9723510	3R_9723510_SNP [dm3] 3R_13897788_SNP [dm6]	C	T	2.124e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_cad
2L	2618952	2L_2618952_SNP [dm3] 2L_2618952_SNP [dm6]	G	A	2.127e^-4	0.998	INTERGENIC
2R	19482830	2R_19482830_SNP [dm3] 2R_23595307_SNP [dm6]	C	G	2.129e^-4	0.998	INTRON apt
X	2488174	X_2488174_SNP [dm3] X_2594141_SNP [dm6]	A	G	2.143e^-4	0.998	INTRON egh
3R	6157656	3R_6157656_SNP [dm3] 3R_10331934_SNP [dm6]	T	C	2.143e^-4	0.998	NON_SYNONYMOUS_CODING CG12818 UPSTREAM Bruce	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	13651038	3L_13651038_SNP [dm3] 3L_13657938_SNP [dm6]	C	T	2.151e^-4	0.998	INTRON bru-3	TF binding site mE1_TFBS_chinmo
3L	9337748	3L_9337748_SNP [dm3] 3L_9344648_SNP [dm6]	T	A	2.162e^-4	0.998	INTRON PGRP-LC
3L	5591956	3L_5591956_SNP [dm3] 3L_5598856_SNP [dm6]	G	T	2.166e^-4	0.998	SYNONYMOUS_CODING CG10591	TF binding site mE1_TFBS_chinmo
X	12655643	X_12655643_SNP [dm3] X_12761610_SNP [dm6]	C	T	2.173e^-4	0.998	SYNONYMOUS_CODING CG12717 UPSTREAM ade5	TF binding site BDTNP1_TFBS_dl
2L	11500808	2L_11500808_SNP [dm3] 2L_11500808_SNP [dm6]	C	A	2.173e^-4	0.998	UPSTREAM spz4 INTERGENIC
2R	1128907	2R_1128907_SNP [dm3] 2R_5241402_SNP [dm6]	G	A	2.186e^-4	0.998	INTRON Nipped-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9930281	X_9930281_SNP [dm3] X_10036248_SNP [dm6]	G	C	2.192e^-4	0.998	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	1611892	2L_1611892_SNP [dm3] 2L_1611892_SNP [dm6]	A	C	2.193e^-4	0.998	UPSTREAM CG31935 DOWNSTREAM RFeSP INTRON CG14352	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	25654903	3R_25654903_SNP [dm3] 3R_29829181_SNP [dm6]	A	G	2.196e^-4	0.998	INTRON Atg16	enhancer mE1_CBP_Enhancers
3R	14541179	3R_14541179_SNP [dm3] 3R_18715457_SNP [dm6]	A	G	2.198e^-4	0.998	UTR_3_PRIME VAChT INTRON Cha
3R	20383253	3R_20383253_SNP [dm3] 3R_24557531_SNP [dm6]	G	T	2.203e^-4	0.998	UTR_3_PRIME CG13624 DOWNSTREAM Esyt2 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2R	9450462	2R_9450462_SNP [dm3] 2R_13562957_SNP [dm6]	C	G	2.210e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	6785177	X_6785177_SNP [dm3] X_6891144_SNP [dm6]	G	A	2.220e^-4	0.998	INTERGENIC
3R	22008568	3R_22008568_SNP [dm3] 3R_26182846_SNP [dm6]	T	C	2.221e^-4	0.998	INTRON CG31323
X	9193296	X_9193296_DEL [dm3] X_9299263_DEL [dm6]	TT	T	2.230e^-4	0.998	INTRON lz
2L	20339405	2L_20339405_SNP [dm3] 2L_20339405_SNP [dm6]	G	A	2.235e^-4	0.998	INTRON spir	TF binding site mE1_TFBS_inv
2L	9659150	2L_9659150_SNP [dm3] 2L_9659150_SNP [dm6]	G	A	2.240e^-4	0.998	INTERGENIC
2R	18774927	2R_18774927_SNP [dm3] 2R_22887404_SNP [dm6]	G	A	2.243e^-4	0.998	SYNONYMOUS_CODING asrij DOWNSTREAM Gmer	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	6791391	3L_6791391_SNP [dm3] 3L_6798291_SNP [dm6]	T	A	2.245e^-4	0.998	INTERGENIC
2L	20045199	2L_20045199_SNP [dm3] 2L_20045199_SNP [dm6]	C	T	2.252e^-4	0.998	INTRON sNPF	transposable element FlyBase
2R	6967928	2R_6967928_DEL [dm3] 2R_11080423_DEL [dm6]	CT	C	2.252e^-4	0.998	INTRON luna	TF binding site mE1_TFBS_chinmo
3R	19889215	3R_19889215_SNP [dm3] 3R_24063493_SNP [dm6]	C	T	2.253e^-4	0.998	UTR_3_PRIME 4EHP DOWNSTREAM SMC1 & 1 other
2L	20325015	2L_20325015_SNP [dm3] 2L_20325015_SNP [dm6]	G	A	2.254e^-4	0.998	INTRON spir
3R	26371018	3R_26371018_SNP [dm3] 3R_30545296_SNP [dm6]	C	T	2.273e^-4	0.998	INTRON tmod
3R	23872081	3R_23872081_SNP [dm3] 3R_28046359_SNP [dm6]	A	T	2.275e^-4	0.998	INTRON CG34362
X	16032374	X_16032374_DEL [dm3] X_16138341_DEL [dm6]	AT	A	2.283e^-4	0.998	INTRON disco-r	TF binding site mE1_TFBS_HSA
3L	1580906	3L_1580906_SNP [dm3] 3L_1580906_SNP [dm6]	A	T	2.289e^-4	0.998	INTRON CG13917
X	16032580	X_16032580_SNP [dm3] X_16138547_SNP [dm6]	G	C	2.298e^-4	0.998	INTRON disco-r	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10231574	3L_10231574_SNP [dm3] 3L_10238474_SNP [dm6]	G	T	2.300e^-4	0.998	INTERGENIC
3L	17574797	3L_17574797_SNP [dm3] 3L_17581697_SNP [dm6]	A	C	2.317e^-4	0.998	INTRON Eip74EF
3R	20684675	3R_20684675_SNP [dm3] 3R_24858953_SNP [dm6]	A	G	2.326e^-4	0.998	DOWNSTREAM ppk22 & 1 other INTRON ppk22
X	14904027	X_14904027_SNP [dm3] X_15009994_SNP [dm6]	A	T	2.327e^-4	0.998	DOWNSTREAM hiw & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3926900	2L_3926900_SNP [dm3] 2L_3926900_SNP [dm6]	C	G	2.339e^-4	0.998	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	8554355	3R_8554355_SNP [dm3] 3R_12728633_SNP [dm6]	G	C	2.344e^-4	0.998	DOWNSTREAM CR44231 INTERGENIC
2R	4905734	2R_4905734_SNP [dm3] 2R_9018229_SNP [dm6]	A	T	2.349e^-4	0.998	DOWNSTREAM CG8170 INTRON CG13747
3L	4811639	3L_4811639_SNP [dm3] 3L_4811639_SNP [dm6]	T	C	2.356e^-4	0.998	SYNONYMOUS_CODING Dhc64C
2L	4927979	2L_4927979_SNP [dm3] 2L_4927979_SNP [dm6]	A	T	2.363e^-4	0.998	INTRON hoe1
2R	8815736	2R_8815736_SNP [dm3] 2R_12928231_SNP [dm6]	T	A	2.368e^-4	0.998	UPSTREAM sug INTRON sug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20485822	3R_20485822_SNP [dm3] 3R_24660100_SNP [dm6]	A	G	2.369e^-4	0.998	SYNONYMOUS_CODING CG31126 DOWNSTREAM Ppox & 1 other	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12808542	2R_12808542_SNP [dm3] 2R_16921037_SNP [dm6]	A	T	2.370e^-4	0.998	INTERGENIC
2R	10934501	2R_10934501_SNP [dm3] 2R_15046996_SNP [dm6]	C	T	2.390e^-4	0.998	INTERGENIC
3R	6158409	3R_6158409_SNP [dm3] 3R_10332687_SNP [dm6]	G	A	2.397e^-4	0.998	UTR_3_PRIME CG12818 UPSTREAM sle	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22188001	3R_22188001_SNP [dm3] 3R_26362279_SNP [dm6]	C	G	2.401e^-4	0.998	UTR_3_PRIME CG33970 DOWNSTREAM CG33970
2L	19625976	2L_19625976_INS [dm3] 2L_19625976_INS [dm6]	G	GTGTACAG	2.402e^-4	0.998	INTRON Lar
3L	9184477	3L_9184477_INS [dm3] 3L_9191377_INS [dm6]	A	AT	2.404e^-4	0.998	INTERGENIC
2R	6990784	2R_6990784_SNP [dm3] 2R_11103279_SNP [dm6]	G	C	2.406e^-4	0.998	INTRON luna	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	12541473	X_12541473_SNP [dm3] X_12647440_SNP [dm6]	T	C	2.421e^-4	0.998	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl
X	9621573	X_9621573_SNP [dm3] X_9727540_SNP [dm6]	A	C	2.432e^-4	0.998	DOWNSTREAM CR43498 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4811757	3L_4811757_SNP [dm3] 3L_4811757_SNP [dm6]	T	A	2.434e^-4	0.998	INTRON Dhc64C
2L	15094581	2L_15094581_SNP [dm3] 2L_15094581_SNP [dm6]	A	T	2.438e^-4	0.998	INTRON CG15270
X	12379495	X_12379495_SNP [dm3] X_12485462_SNP [dm6]	A	G	2.442e^-4	0.998	INTERGENIC
2R	13418242	2R_13418242_SNP [dm3] 2R_17530737_SNP [dm6]	G	T	2.446e^-4	0.998	INTRON Patronin	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	6095860	2R_6095860_SNP [dm3] 2R_10208355_SNP [dm6]	T	G	2.448e^-4	0.998	INTRON Hr46 & 1 other
3L	8607367	3L_8607367_SNP [dm3] 3L_8614267_SNP [dm6]	G	T	2.452e^-4	0.998	INTRON CG6282
X	13321114	X_13321114_SNP [dm3] X_13427081_SNP [dm6]	T	A	2.453e^-4	0.998	INTERGENIC
2R	17568274	2R_17568274_SNP [dm3] 2R_21680769_SNP [dm6]	C	T	2.453e^-4	0.998	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_chinmo
2L	9731867	2L_9731867_DEL [dm3] 2L_9731867_DEL [dm6]	TAT	T	2.468e^-4	0.998	DOWNSTREAM CG13116 INTRON Nckx30C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
3R	13318461	3R_13318461_SNP [dm3] 3R_17492739_SNP [dm6]	G	C	2.472e^-4	0.998	INTRON Dscam3	TF binding site mE1_TFBS_HSA
2R	16664970	2R_16664970_SNP [dm3] 2R_20777465_SNP [dm6]	T	A	2.472e^-4	0.998	SYNONYMOUS_CODING CG43710 DOWNSTREAM CG43711
2R	4520984	2R_4520984_SNP [dm3] 2R_8633479_SNP [dm6]	A	G	2.476e^-4	0.998	INTERGENIC
3R	25200876	3R_25200876_SNP [dm3] 3R_29375154_SNP [dm6]	G	C	2.507e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	1079973	2R_1079973_SNP [dm3] 2R_5192468_SNP [dm6]	T	C	2.508e^-4	0.998	INTRON Nipped-A
3L	2777501	3L_2777501_SNP [dm3] 3L_2777501_SNP [dm6]	G	A	2.510e^-4	0.998	NON_SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2777539	3L_2777539_SNP [dm3] 3L_2777539_SNP [dm6]	G	C	2.510e^-4	0.998	NON_SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12176342	X_12176342_SNP [dm3] X_12282309_SNP [dm6]	G	A	2.512e^-4	0.998	INTRON Ten-a
3R	25654299	3R_25654299_SNP [dm3] 3R_29828577_SNP [dm6]	A	G	2.522e^-4	0.998	INTRON Atg16
2R	13052491	2R_13052491_SNP [dm3] 2R_17164986_SNP [dm6]	A	T	2.539e^-4	0.998	DOWNSTREAM CG10953 INTERGENIC
2L	12949977	2L_12949977_SNP [dm3] 2L_12949977_SNP [dm6]	G	C	2.541e^-4	0.998	INTERGENIC
2R	3672690	2R_3672690_SNP [dm3] 2R_7785185_SNP [dm6]	G	A	2.545e^-4	0.998	UPSTREAM CanB2 & 1 other EXON CR45108
2R	5125848	2R_5125848_SNP [dm3] 2R_9238343_SNP [dm6]	G	A	2.546e^-4	0.998	SYNONYMOUS_CODING Cyp4p2 INTRON hig
X	22332690	X_22332690_SNP [dm3] X_22930854_SNP [dm6]	A	G	2.549e^-4	0.998	INTERGENIC	transposable element FlyBase
3L	2777593	3L_2777593_SNP [dm3] 3L_2777593_SNP [dm6]	C	A	2.552e^-4	0.998	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18916288	3L_18916288_INS [dm3] 3L_18923188_INS [dm6]	C	CCATATAT	2.553e^-4	0.998	UTR_3_PRIME CG32204
2R	9213744	2R_9213744_SNP [dm3] 2R_13326239_SNP [dm6]	A	G	2.564e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20042346	2L_20042346_SNP [dm3] 2L_20042346_SNP [dm6]	G	A	2.568e^-4	0.998	INTRON sNPF
X	12379509	X_12379509_SNP [dm3] X_12485476_SNP [dm6]	T	C	2.572e^-4	0.998	INTERGENIC
2R	3672670	2R_3672670_SNP [dm3] 2R_7785165_SNP [dm6]	C	T	2.574e^-4	0.998	UPSTREAM CanB2 & 1 other EXON CR45108
3R	14721135	3R_14721135_SNP [dm3] 3R_18895413_SNP [dm6]	T	C	2.589e^-4	0.998	INTERGENIC
2L	9073688	2L_9073688_SNP [dm3] 2L_9073688_SNP [dm6]	T	C	2.590e^-4	0.998	INTERGENIC
3R	25046175	3R_25046175_SNP [dm3] 3R_29220453_SNP [dm6]	C	T	2.591e^-4	0.998	SYNONYMOUS_CODING Ef1gamma DOWNSTREAM CR31044	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	4133300	2L_4133300_SNP [dm3] 2L_4133300_SNP [dm6]	G	A	2.591e^-4	0.998	INTERGENIC
3L	10230271	3L_10230271_SNP [dm3] 3L_10237171_SNP [dm6]	A	T	2.596e^-4	0.998	DOWNSTREAM CR44542 INTERGENIC
3R	2718658	3R_2718658_SNP [dm3] 3R_6892936_SNP [dm6]	T	A	2.601e^-4	0.998	EXON CR45559	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15145620	2R_15145620_SNP [dm3] 2R_19258115_SNP [dm6]	G	T	2.619e^-4	0.998	DOWNSTREAM CR44432 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	11033603	3L_11033603_SNP [dm3] 3L_11040503_SNP [dm6]	C	T	2.626e^-4	0.998	SYNONYMOUS_CODING CG43693 UPSTREAM CG43693 INTRON CG43693
2R	9817013	2R_9817013_SNP [dm3] 2R_13929508_SNP [dm6]	C	T	2.627e^-4	0.998	INTRON shot
3L	19240216	3L_19240216_SNP [dm3] 3L_19247116_SNP [dm6]	G	C	2.628e^-4	0.998	INTERGENIC
2L	5790636	2L_5790636_SNP [dm3] 2L_5790636_SNP [dm6]	C	T	2.640e^-4	0.998	INTRON CG9171	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5764791	2L_5764791_SNP [dm3] 2L_5764791_SNP [dm6]	G	A	2.642e^-4	0.998	INTRON obst-E
2R	2750056	2R_2750056_SNP [dm3] 2R_6862551_SNP [dm6]	G	T	2.646e^-4	0.998	UTR_3_PRIME coro
X	3523317	X_3523317_SNP [dm3] X_3629284_SNP [dm6]	C	T	2.650e^-4	0.998	INTRON AstA-R1
2R	11804753	2R_11804753_SNP [dm3] 2R_15917248_SNP [dm6]	G	C	2.676e^-4	0.998	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad
3R	16328887	3R_16328887_SNP [dm3] 3R_20503165_SNP [dm6]	A	T	2.706e^-4	0.998	UTR_3_PRIME MtnB DOWNSTREAM MtnB
2L	10913181	2L_10913181_INS [dm3] 2L_10913181_INS [dm6]	G	GGCG	2.719e^-4	0.998	INTERGENIC
2L	4329695	2L_4329695_SNP [dm3] 2L_4329695_SNP [dm6]	C	T	2.723e^-4	0.998	SYNONYMOUS_CODING CG16857	TF binding site mE1_TFBS_chinmo
2L	18189883	2L_18189883_SNP [dm3] 2L_18189883_SNP [dm6]	T	G	2.725e^-4	0.998	INTRON CG42750
2L	4133305	2L_4133305_SNP [dm3] 2L_4133305_SNP [dm6]	T	G	2.732e^-4	0.998	INTERGENIC
2L	12804469	2L_12804469_SNP [dm3] 2L_12804469_SNP [dm6]	G	T	2.761e^-4	0.998	INTERGENIC
3L	5140468	3L_5140468_SNP [dm3] 3L_5147368_SNP [dm6]	G	A	2.766e^-4	0.998	SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	21649029	3R_21649029_DEL [dm3] 3R_25823307_DEL [dm6]	TT	T	2.769e^-4	0.998	DOWNSTREAM CR44949 INTERGENIC
3R	20684698	3R_20684698_SNP [dm3] 3R_24858976_SNP [dm6]	T	A	2.791e^-4	0.998	DOWNSTREAM ppk22 & 1 other INTRON ppk22
3R	5325738	3R_5325738_SNP [dm3] 3R_9500016_SNP [dm6]	A	G	2.796e^-4	0.998	INTRON RhoL
2L	9731864	2L_9731864_INS [dm3] 2L_9731864_INS [dm6]	C	CGTAAAACAAAGCACACAAC...	2.799e^-4	0.998	DOWNSTREAM CG13116 INTRON Nckx30C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
3L	12586052	3L_12586052_SNP [dm3] 3L_12592952_SNP [dm6]	C	G	2.801e^-4	0.998	INTRON ara	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9597366	3L_9597366_SNP [dm3] 3L_9604266_SNP [dm6]	T	A	2.821e^-4	0.998	INTRON CG3280
3L	5140541	3L_5140541_SNP [dm3] 3L_5147441_SNP [dm6]	A	T	2.855e^-4	0.998	INTRON Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	19626007	2L_19626007_SNP [dm3] 2L_19626007_SNP [dm6]	G	T	2.861e^-4	0.998	INTRON Lar
2R	6777759	2R_6777759_SNP [dm3] 2R_10890254_SNP [dm6]	G	T	2.867e^-4	0.998	SYNONYMOUS_CODING CG30020	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	9715717	2L_9715717_INS [dm3] 2L_9715717_INS [dm6]	T	TT	2.869e^-4	0.998	UTR_3_PRIME Nckx30C DOWNSTREAM Nckx30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4691760	3R_4691760_SNP [dm3] 3R_8866038_SNP [dm6]	G	T	2.870e^-4	0.998	INTRON pyd
2R	6078098	2R_6078098_SNP [dm3] 2R_10190593_SNP [dm6]	T	C	2.876e^-4	0.998	INTRON KCNQ	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14084793	3L_14084793_SNP [dm3] 3L_14091693_SNP [dm6]	G	T	2.881e^-4	0.998	INTERGENIC
2R	6229443	2R_6229443_SNP [dm3] 2R_10341938_SNP [dm6]	T	C	2.881e^-4	0.998	INTRON CG42732
X	4520526	X_4520526_SNP [dm3] X_4626493_SNP [dm6]	A	G	2.883e^-4	0.998	UTR_3_PRIME peb DOWNSTREAM peb & 1 other
2L	3926915	2L_3926915_SNP [dm3] 2L_3926915_SNP [dm6]	A	T	2.885e^-4	0.998	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	17761855	3R_17761855_SNP [dm3] 3R_21936133_SNP [dm6]	G	A	2.891e^-4	0.998	INTERGENIC
3L	1235234	3L_1235234_SNP [dm3] 3L_1235234_SNP [dm6]	A	T	2.902e^-4	0.998	UTR_3_PRIME CG33966 UPSTREAM CR45747 & 1 other
2L	5765946	2L_5765946_SNP [dm3] 2L_5765946_SNP [dm6]	C	T	2.905e^-4	0.998	INTRON obst-E
2L	19626030	2L_19626030_INS [dm3] 2L_19626030_INS [dm6]	A	ATCTAA	2.906e^-4	0.998	INTRON Lar
3L	5826649	3L_5826649_SNP [dm3] 3L_5833549_SNP [dm6]	C	A	2.907e^-4	0.998	INTRON vn	TF binding site mE1_TFBS_HSA
2R	2764654	2R_2764654_SNP [dm3] 2R_6877149_SNP [dm6]	G	C	2.910e^-4	0.998	INTRON Spn42Da & 1 other
2L	3655732	2L_3655732_SNP [dm3] 2L_3655732_SNP [dm6]	A	C	2.911e^-4	0.998	INTRON for	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	5733694	2R_5733694_SNP [dm3] 2R_9846189_SNP [dm6]	C	A	2.919e^-4	0.998	SYNONYMOUS_CODING Orc6 DOWNSTREAM CG1667 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	12562681	X_12562681_SNP [dm3] X_12668648_SNP [dm6]	A	G	2.921e^-4	0.998	INTRON Tis11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	9531819	2R_9531819_SNP [dm3] 2R_13644314_SNP [dm6]	G	A	2.926e^-4	0.998	INTRON fas
2R	4684924	2R_4684924_SNP [dm3] 2R_8797419_SNP [dm6]	G	A	2.932e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11504505	2L_11504505_SNP [dm3] 2L_11504505_SNP [dm6]	T	A	2.940e^-4	0.998	INTRON spz4
X	20875721	X_20875721_SNP [dm3] X_21004694_SNP [dm6]	G	T	2.947e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
3L	6791249	3L_6791249_SNP [dm3] 3L_6798149_SNP [dm6]	C	A	2.949e^-4	0.998	INTERGENIC
3L	8634073	3L_8634073_SNP [dm3] 3L_8640973_SNP [dm6]	A	G	2.951e^-4	0.998	SYNONYMOUS_CODING Cpr66D
2R	16540024	2R_16540024_SNP [dm3] 2R_20652519_SNP [dm6]	T	A	2.953e^-4	0.998	DOWNSTREAM CG16799 INTRON Lrt	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
3R	6675343	3R_6675343_DEL [dm3] 3R_10849621_DEL [dm6]	AA	A	2.955e^-4	0.998	UPSTREAM CG42394 DOWNSTREAM Cad86C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	11961274	2R_11961274_SNP [dm3] 2R_16073769_SNP [dm6]	G	T	2.961e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9120533	2R_9120533_SNP [dm3] 2R_13233028_SNP [dm6]	T	A	2.966e^-4	0.998	INTRON CG4670
3L	14913364	3L_14913364_SNP [dm3] 3L_14920264_SNP [dm6]	A	C	2.974e^-4	0.998	INTRON DCX-EMAP
3R	22008565	3R_22008565_SNP [dm3] 3R_26182843_SNP [dm6]	C	T	2.976e^-4	0.998	INTRON CG31323
X	11342198	X_11342198_DEL [dm3] X_11448165_DEL [dm6]	TTT	C	2.980e^-4	0.998	INTRON Evi5
2L	4127705	2L_4127705_SNP [dm3] 2L_4127705_SNP [dm6]	A	G	2.993e^-4	0.998	INTERGENIC
3R	14523268	3R_14523268_SNP [dm3] 3R_18697546_SNP [dm6]	A	C	2.995e^-4	0.998	INTERGENIC
3L	13308961	3L_13308961_SNP [dm3] 3L_13315861_SNP [dm6]	T	A	3.002e^-4	0.998	INTERGENIC
3L	2912650	3L_2912650_SNP [dm3] 3L_2912650_SNP [dm6]	C	T	3.046e^-4	0.998	INTRON Shab
3L	15972355	3L_15972355_SNP [dm3] 3L_15979255_SNP [dm6]	C	T	3.047e^-4	0.998	UPSTREAM CG17027 DOWNSTREAM CG17029 INTRON brm & 1 other
3L	16885380	3L_16885380_SNP [dm3] 3L_16892280_SNP [dm6]	G	A	3.051e^-4	0.998	INTRON Lmpt
2L	3926887	2L_3926887_SNP [dm3] 2L_3926887_SNP [dm6]	A	T	3.058e^-4	0.998	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	10526335	2R_10526335_SNP [dm3] 2R_14638830_SNP [dm6]	C	T	3.066e^-4	0.998	UTR_3_PRIME CG43236 UPSTREAM CG42715 DOWNSTREAM CG43236	TF binding site mE1_TFBS_inv
3R	14863213	3R_14863213_SNP [dm3] 3R_19037491_SNP [dm6]	C	T	3.077e^-4	0.998	INTRON CG6026
X	4609600	X_4609600_DEL [dm3] X_4715567_DEL [dm6]	TTT	T	3.101e^-4	0.998	INTRON Proc-R
3L	16884765	3L_16884765_SNP [dm3] 3L_16891665_SNP [dm6]	G	A	3.103e^-4	0.998	INTRON Lmpt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	15815678	X_15815678_INS [dm3] X_15921645_INS [dm6]	A	ACA	3.104e^-4	0.998	UPSTREAM CG8916 DOWNSTREAM CG8909 INTERGENIC
3R	21914562	3R_21914562_SNP [dm3] 3R_26088840_SNP [dm6]	T	G	3.116e^-4	0.998	INTRON dys	regulatory region REDfly_CRMs
2L	11389893	2L_11389893_SNP [dm3] 2L_11389893_SNP [dm6]	A	G	3.120e^-4	0.998	DOWNSTREAM CR43681 EXON CR43681	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4077036	X_4077036_SNP [dm3] X_4183003_SNP [dm6]	A	G	3.123e^-4	0.998	INTRON Fas2
3L	1423669	3L_1423669_INS [dm3] 3L_1423669_INS [dm6]	G	GG	3.130e^-4	0.998	UPSTREAM CG9173 INTRON Ptp61F
2L	8432985	2L_8432985_SNP [dm3] 2L_8432985_SNP [dm6]	A	T	3.134e^-4	0.998	INTRON grk
3L	8804580	3L_8804580_SNP [dm3] 3L_8811480_SNP [dm6]	C	A	3.135e^-4	0.998	DOWNSTREAM CG13309 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10514021	2R_10514021_SNP [dm3] 2R_14626516_SNP [dm6]	C	T	3.136e^-4	0.998	INTERGENIC
3R	19407124	3R_19407124_SNP [dm3] 3R_23581402_SNP [dm6]	C	A	3.139e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16981350	3L_16981350_SNP [dm3] 3L_16988250_SNP [dm6]	C	T	3.140e^-4	0.998	INTRON Exn
2L	3926856	2L_3926856_SNP [dm3] 2L_3926856_SNP [dm6]	C	A	3.148e^-4	0.998	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	6844320	2L_6844320_SNP [dm3] 2L_6844320_SNP [dm6]	T	C	3.162e^-4	0.998	INTERGENIC
2R	12504984	2R_12504984_SNP [dm3] 2R_16617479_SNP [dm6]	G	T	3.162e^-4	0.998	UPSTREAM CG5065 INTRON CG5065
2L	12415091	2L_12415091_SNP [dm3] 2L_12415091_SNP [dm6]	A	G	3.165e^-4	0.998	INTRON vir-1
2L	3374474	2L_3374474_SNP [dm3] 2L_3374474_SNP [dm6]	A	G	3.178e^-4	0.998	SYNONYMOUS_CODING CG15412	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17882202	2L_17882202_SNP [dm3] 2L_17882202_SNP [dm6]	T	C	3.180e^-4	0.998	INTERGENIC
2R	10450309	2R_10450309_SNP [dm3] 2R_14562804_SNP [dm6]	G	T	3.197e^-4	0.998	INTRON ttv
2R	1120689	2R_1120689_SNP [dm3] 2R_5233184_SNP [dm6]	T	C	3.213e^-4	0.998	INTRON Nipped-A	transposable element FlyBase
2L	4992442	2L_4992442_SNP [dm3] 2L_4992442_SNP [dm6]	A	T	3.213e^-4	0.998	UTR_3_PRIME CG34126 DOWNSTREAM Rtnl1 & 1 other
X	20002587	X_20002587_SNP [dm3] X_20108554_SNP [dm6]	A	T	3.215e^-4	0.998	INTERGENIC
3R	24421001	3R_24421001_SNP [dm3] 3R_28595279_SNP [dm6]	G	C	3.229e^-4	0.998	DOWNSTREAM CR43440 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	4520545	X_4520545_INS [dm3] X_4626512_INS [dm6]	A	AG	3.232e^-4	0.998	UTR_3_PRIME peb DOWNSTREAM peb & 1 other
2R	6971287	2R_6971287_SNP [dm3] 2R_11083782_SNP [dm6]	G	A	3.232e^-4	0.998	INTRON luna
2L	8073572	2L_8073572_SNP [dm3] 2L_8073572_SNP [dm6]	A	C	3.234e^-4	0.998	SYNONYMOUS_CODING Trf UPSTREAM MED20 DOWNSTREAM Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	16744904	X_16744904_SNP [dm3] X_16850871_SNP [dm6]	A	T	3.254e^-4	0.998	INTRON CG13003
3R	6152798	3R_6152798_SNP [dm3] 3R_10327076_SNP [dm6]	C	T	3.267e^-4	0.998	NON_SYNONYMOUS_CODING Bruce	TF binding site mE1_TFBS_sens
3R	11982389	3R_11982389_DEL [dm3] 3R_16156667_DEL [dm6]	GATGAATG	G	3.271e^-4	0.998	INTRON CG6006
2L	12506916	2L_12506916_SNP [dm3] 2L_12506916_SNP [dm6]	G	C	3.285e^-4	0.998	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	12295382	X_12295382_DEL [dm3] X_12401349_DEL [dm6]	TCGCCCG	T	3.288e^-4	0.998	INTERGENIC
X	12295390	X_12295390_DEL [dm3] X_12401357_DEL [dm6]	TTTTCACC	T	3.288e^-4	0.998	INTERGENIC
2L	5616104	2L_5616104_SNP [dm3] 2L_5616104_SNP [dm6]	C	T	3.293e^-4	0.998	DOWNSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	10503172	2R_10503172_SNP [dm3] 2R_14615667_SNP [dm6]	G	A	3.299e^-4	0.998	SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2098527	X_2098527_SNP [dm3] X_2204494_SNP [dm6]	T	A	3.309e^-4	0.998	UPSTREAM CG18031 INTRON Mct1	TF binding site mE1_TFBS_chinmo
3L	7892447	3L_7892447_SNP [dm3] 3L_7899347_SNP [dm6]	T	G	3.309e^-4	0.998	UTR_5_PRIME pbl INTRON pbl
3R	26649427	3R_26649427_SNP [dm3] 3R_30823705_SNP [dm6]	C	G	3.312e^-4	0.998	INTRON cindr
3L	10166390	3L_10166390_DEL [dm3] 3L_10173290_DEL [dm6]	AATTTTTTTCTCTGA...	A	3.315e^-4	0.998	INTRON dpr10
3R	23671215	3R_23671215_SNP [dm3] 3R_27845493_SNP [dm6]	C	T	3.319e^-4	0.998	UPSTREAM Or98a DOWNSTREAM Or98P INTRON CG34353
2L	20339406	2L_20339406_SNP [dm3] 2L_20339406_SNP [dm6]	C	A	3.329e^-4	0.998	INTRON spir	TF binding site mE1_TFBS_inv
2L	14350006	2L_14350006_SNP [dm3] 2L_14350006_SNP [dm6]	A	G	3.331e^-4	0.998	DOWNSTREAM CR44850 INTRON l_2_34Fc
3L	2652170	3L_2652170_SNP [dm3] 3L_2652170_SNP [dm6]	C	A	3.334e^-4	0.998	NON_SYNONYMOUS_CODING Snup START_GAINED CG42304 UTR_5_PRIME CG42304 UPSTREAM Aats-pro	TF binding site mE1_TFBS_cad
3L	14913421	3L_14913421_SNP [dm3] 3L_14920321_SNP [dm6]	T	A	3.337e^-4	0.998	INTRON DCX-EMAP
3R	19422221	3R_19422221_SNP [dm3] 3R_23596499_SNP [dm6]	C	T	3.341e^-4	0.998	UPSTREAM CG16723 DOWNSTREAM CG10183 INTERGENIC
3L	21202252	3L_21202252_SNP [dm3] 3L_21209152_SNP [dm6]	C	T	3.342e^-4	0.998	SYNONYMOUS_CODING CG10510	TF binding site mE1_TFBS_cad
2R	9450372	2R_9450372_SNP [dm3] 2R_13562867_SNP [dm6]	A	T	3.348e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2R	14678243	2R_14678243_SNP [dm3] 2R_18790738_SNP [dm6]	A	T	3.351e^-4	0.998	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2135849	X_2135849_SNP [dm3] X_2241816_SNP [dm6]	C	T	3.372e^-4	0.998	UPSTREAM fs_1_K10 INTRON kz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10433970	2R_10433970_SNP [dm3] 2R_14546465_SNP [dm6]	A	C	3.374e^-4	0.998	UPSTREAM CG30076 INTRON ttv
2R	6759885	2R_6759885_DEL [dm3] 2R_10872380_DEL [dm6]	GTAAG	A	3.375e^-4	0.998	INTRON CG30015
X	16559764	X_16559764_SNP [dm3] X_16665731_SNP [dm6]	A	C	3.403e^-4	0.998	INTRON r
2L	1959630	2L_1959630_SNP [dm3] 2L_1959630_SNP [dm6]	T	C	3.408e^-4	0.998	INTRON erm	TF binding site mE1_TFBS_chinmo
3L	13127262	3L_13127262_SNP [dm3] 3L_13134162_SNP [dm6]	G	T	3.410e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18975371	3L_18975371_SNP [dm3] 3L_18982271_SNP [dm6]	A	C	3.411e^-4	0.998	INTERGENIC
3R	22943123	3R_22943123_SNP [dm3] 3R_27117401_SNP [dm6]	A	G	3.418e^-4	0.998	SYNONYMOUS_CODING CG5880 UPSTREAM CG6066	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	13106644	2L_13106644_DEL [dm3] 2L_13106644_DEL [dm6]	AA	A	3.424e^-4	0.998	UPSTREAM CG5142 INTERGENIC
3L	16532815	3L_16532815_SNP [dm3] 3L_16539715_SNP [dm6]	G	T	3.432e^-4	0.998	INTRON CG43373
X	15227948	X_15227948_INS [dm3] X_15333915_INS [dm6]	C	CGCG	3.443e^-4	0.998	UTR_5_PRIME HDAC6 UPSTREAM CG9114 & 1 other DOWNSTREAM CR44998	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	17882211	2L_17882211_SNP [dm3] 2L_17882211_SNP [dm6]	C	T	3.452e^-4	0.998	INTERGENIC
3L	8804423	3L_8804423_SNP [dm3] 3L_8811323_SNP [dm6]	A	G	3.466e^-4	0.998	DOWNSTREAM CG13309 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16502741	2R_16502741_SNP [dm3] 2R_20615236_SNP [dm6]	G	C	3.467e^-4	0.998	INTRON Hil
2R	14816630	2R_14816630_SNP [dm3] 2R_18929125_SNP [dm6]	T	C	3.471e^-4	0.998	INTRON sano
2L	4394430	2L_4394430_SNP [dm3] 2L_4394430_SNP [dm6]	A	G	3.474e^-4	0.998	SYNONYMOUS_CODING l_2_k05819 UPSTREAM CG3652	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	18897577	2R_18897577_SNP [dm3] 2R_23010054_SNP [dm6]	A	C	3.476e^-4	0.998	INTRON twi	TF binding site mE1_TFBS_chinmo
2R	12885339	2R_12885339_SNP [dm3] 2R_16997834_SNP [dm6]	G	A	3.480e^-4	0.998	SYNONYMOUS_CODING ste24c UTR_5_PRIME CG30461 UPSTREAM CG30461 DOWNSTREAM ste24b	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	20349996	2L_20349996_SNP [dm3] 2L_20349996_SNP [dm6]	G	T	3.494e^-4	0.998	UTR_5_PRIME La UPSTREAM RtGEF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	11670864	2R_11670864_SNP [dm3] 2R_15783359_SNP [dm6]	G	A	3.497e^-4	0.998	SYNONYMOUS_CODING Zasp52
3R	14133164	3R_14133164_SNP [dm3] 3R_18307442_SNP [dm6]	T	C	3.502e^-4	0.998	INTRON PKD
3R	25474908	3R_25474908_DEL [dm3] 3R_29649186_DEL [dm6]	GACTAG	G	3.506e^-4	0.998	INTRON Dop1R2
X	14460110	X_14460110_SNP [dm3] X_14566077_SNP [dm6]	C	T	3.507e^-4	0.998	INTERGENIC
3R	9551363	3R_9551363_SNP [dm3] 3R_13725641_SNP [dm6]	A	G	3.509e^-4	0.998	INTRON CG34383
2R	9450584	2R_9450584_SNP [dm3] 2R_13563079_SNP [dm6]	T	C	3.520e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	25474918	3R_25474918_SNP [dm3] 3R_29649196_SNP [dm6]	T	G	3.525e^-4	0.998	INTRON Dop1R2
X	16559760	X_16559760_SNP [dm3] X_16665727_SNP [dm6]	T	C	3.531e^-4	0.998	INTRON r
2L	20035275	2L_20035275_SNP [dm3] 2L_20035275_SNP [dm6]	G	C	3.544e^-4	0.998	INTRON sNPF
2R	2087226	2R_2087226_SNP [dm3] 2R_6199721_SNP [dm6]	A	T	3.551e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9450644	2R_9450644_SNP [dm3] 2R_13563139_SNP [dm6]	C	G	3.566e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	14147740	2R_14147740_SNP [dm3] 2R_18260235_SNP [dm6]	C	A	3.570e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5980271	2L_5980271_SNP [dm3] 2L_5980271_SNP [dm6]	C	T	3.578e^-4	0.998	UTR_5_PRIME chic UPSTREAM chic INTRON chic	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	8117865	2L_8117865_SNP [dm3] 2L_8117865_SNP [dm6]	A	T	3.583e^-4	0.998	SPLICE_SITE_REGION mon2 INTRON mon2
2L	8117877	2L_8117877_SNP [dm3] 2L_8117877_SNP [dm6]	T	G	3.583e^-4	0.998	INTRON mon2
3R	7867881	3R_7867881_SNP [dm3] 3R_12042159_SNP [dm6]	C	T	3.588e^-4	0.998	SPLICE_SITE_REGION CG14736 INTRON CG14736
3R	11310658	3R_11310658_SNP [dm3] 3R_15484936_SNP [dm6]	A	G	3.590e^-4	0.998	SYNONYMOUS_CODING Trissin DOWNSTREAM Rh6
2R	18774924	2R_18774924_SNP [dm3] 2R_22887401_SNP [dm6]	T	C	3.593e^-4	0.998	SYNONYMOUS_CODING asrij DOWNSTREAM Gmer	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	7807516	2L_7807516_SNP [dm3] 2L_7807516_SNP [dm6]	A	G	3.597e^-4	0.998	INTRON cdc14
3R	16642071	3R_16642071_DEL [dm3] 3R_20816349_DEL [dm6]	TTT	C	3.602e^-4	0.998	UPSTREAM Fancd2 DOWNSTREAM CG17270 INTERGENIC
2L	19626046	2L_19626046_DEL [dm3] 2L_19626046_DEL [dm6]	TTA	T	3.604e^-4	0.998	INTRON Lar
2L	6092269	2L_6092269_SNP [dm3] 2L_6092269_SNP [dm6]	A	G	3.607e^-4	0.998	INTRON Kr-h1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	11498826	2L_11498826_SNP [dm3] 2L_11498826_SNP [dm6]	G	A	3.621e^-4	0.998	SYNONYMOUS_CODING CG6488	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16837876	2R_16837876_SNP [dm3] 2R_20950371_SNP [dm6]	C	G	3.625e^-4	0.998	INTRON CG33704	TF binding site BDTNP1_TFBS_da
X	18693071	X_18693071_SNP [dm3] X_18799038_SNP [dm6]	A	C	3.626e^-4	0.998	INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9314316	2L_9314316_SNP [dm3] 2L_9314316_SNP [dm6]	A	G	3.632e^-4	0.998	INTERGENIC
X	8680300	X_8680300_SNP [dm3] X_8786267_SNP [dm6]	A	T	3.636e^-4	0.998	UPSTREAM Lim1 INTRON Lim1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	26888252	3R_26888252_INS [dm3] 3R_31062530_INS [dm6]	C	CAC	3.655e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	14104076	3L_14104076_SNP [dm3] 3L_14110976_SNP [dm6]	G	A	3.657e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	10428449	X_10428449_SNP [dm3] X_10534416_SNP [dm6]	A	G	3.663e^-4	0.998	INTRON spri
2L	16367485	2L_16367485_SNP [dm3] 2L_16367485_SNP [dm6]	C	G	3.669e^-4	0.998	DOWNSTREAM jhamt INTERGENIC
2R	12345744	2R_12345744_SNP [dm3] 2R_16458239_SNP [dm6]	C	A	3.671e^-4	0.998	INTERGENIC
3R	20684637	3R_20684637_SNP [dm3] 3R_24858915_SNP [dm6]	C	T	3.675e^-4	0.998	NON_SYNONYMOUS_CODING ppk22 DOWNSTREAM ppk22 & 1 other
2L	15094665	2L_15094665_SNP [dm3] 2L_15094665_SNP [dm6]	G	T	3.691e^-4	0.998	INTRON CG15270
3L	2778472	3L_2778472_SNP [dm3] 3L_2778472_SNP [dm6]	G	A	3.693e^-4	0.998	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	19626034	2L_19626034_SNP [dm3] 2L_19626034_SNP [dm6]	T	G	3.696e^-4	0.998	INTRON Lar
2R	17607904	2R_17607904_SNP [dm3] 2R_21720399_SNP [dm6]	C	T	3.697e^-4	0.998	UPSTREAM LBR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	17396232	3L_17396232_SNP [dm3] 3L_17403132_SNP [dm6]	A	C	3.700e^-4	0.998	INTRON blot
2L	2004747	2L_2004747_SNP [dm3] 2L_2004747_SNP [dm6]	C	G	3.707e^-4	0.998	DOWNSTREAM CR43464 INTRON CG33543
2R	5739874	2R_5739874_SNP [dm3] 2R_9852369_SNP [dm6]	G	A	3.710e^-4	0.998	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7002361	2R_7002361_DEL [dm3] 2R_11114856_DEL [dm6]	AC	G	3.711e^-4	0.998	INTRON luna	TF binding site BDTNP1_TFBS_twi
3L	2810144	3L_2810144_SNP [dm3] 3L_2810144_SNP [dm6]	A	T	3.730e^-4	0.998	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	6791384	3L_6791384_DEL [dm3] 3L_6798284_DEL [dm6]	ATGTA	A	3.734e^-4	0.998	INTERGENIC
3R	5374332	3R_5374332_SNP [dm3] 3R_9548610_SNP [dm6]	G	A	3.738e^-4	0.998	INTRON mura EXON CR42549
2R	8843648	2R_8843648_SNP [dm3] 2R_12956143_SNP [dm6]	G	A	3.746e^-4	0.998	DOWNSTREAM CG13321 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	10428499	X_10428499_SNP [dm3] X_10534466_SNP [dm6]	A	T	3.748e^-4	0.998	INTRON spri
3L	1130583	3L_1130583_SNP [dm3] 3L_1130583_SNP [dm6]	T	A	3.750e^-4	0.998	INTERGENIC	regulatory region REDfly_CRMs
2R	5745118	2R_5745118_SNP [dm3] 2R_9857613_SNP [dm6]	G	A	3.753e^-4	0.998	INTRON CG1516
2R	2735231	2R_2735231_SNP [dm3] 2R_6847726_SNP [dm6]	T	G	3.760e^-4	0.998	INTERGENIC
3L	10754596	3L_10754596_SNP [dm3] 3L_10761496_SNP [dm6]	G	A	3.761e^-4	0.998	INTERGENIC
2L	19625992	2L_19625992_DEL [dm3] 2L_19625992_DEL [dm6]	TGCG	GA	3.769e^-4	0.998	INTRON Lar
3L	3559115	3L_3559115_SNP [dm3] 3L_3559115_SNP [dm6]	T	A	3.776e^-4	0.998	INTRON Eip63E
3R	23673204	3R_23673204_SNP [dm3] 3R_27847482_SNP [dm6]	C	T	3.793e^-4	0.998	DOWNSTREAM Or98a INTRON CG34353
X	9621610	X_9621610_SNP [dm3] X_9727577_SNP [dm6]	G	A	3.794e^-4	0.998	DOWNSTREAM CR43498 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5001591	3L_5001591_SNP [dm3] 3L_5001591_SNP [dm6]	C	T	3.794e^-4	0.998	INTRON Con
3L	15848202	3L_15848202_SNP [dm3] 3L_15855102_SNP [dm6]	A	T	3.806e^-4	0.998	INTRON pHCl
2L	5610814	2L_5610814_SNP [dm3] 2L_5610814_SNP [dm6]	C	T	3.837e^-4	0.998	INTRON CG14010
3R	10632189	3R_10632189_SNP [dm3] 3R_14806467_SNP [dm6]	A	G	3.842e^-4	0.998	UTR_3_PRIME btsz DOWNSTREAM btsz	TF binding site BDTNP1_TFBS_hb
3L	18396050	3L_18396050_SNP [dm3] 3L_18402950_SNP [dm6]	A	T	3.847e^-4	0.998	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9070158	3R_9070158_SNP [dm3] 3R_13244436_SNP [dm6]	A	G	3.853e^-4	0.998	INTRON Ace
3R	4138989	3R_4138989_INS [dm3] 3R_8313267_INS [dm6]	A	AG	3.858e^-4	0.998	UTR_5_PRIME eIF4AIII DOWNSTREAM CG11698	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	17896824	2R_17896824_SNP [dm3] 2R_22009319_SNP [dm6]	A	G	3.863e^-4	0.998	INTRON CG34370
2R	6778427	2R_6778427_SNP [dm3] 2R_10890922_SNP [dm6]	A	T	3.866e^-4	0.998	INTRON CG30020
3L	14913420	3L_14913420_SNP [dm3] 3L_14920320_SNP [dm6]	T	G	3.873e^-4	0.998	INTRON DCX-EMAP
2L	15869397	2L_15869397_SNP [dm3] 2L_15869397_SNP [dm6]	T	G	3.873e^-4	0.998	INTERGENIC
2L	17295707	2L_17295707_SNP [dm3] 2L_17295707_SNP [dm6]	A	C	3.876e^-4	0.998	INTERGENIC
X	10431608	X_10431608_SNP [dm3] X_10537575_SNP [dm6]	G	A	3.882e^-4	0.998	INTRON spri	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19262562	2R_19262562_SNP [dm3] 2R_23375039_SNP [dm6]	A	G	3.883e^-4	0.998	SYNONYMOUS_CODING Golgin245	TF binding site mE1_TFBS_cad
3R	12935728	3R_12935728_SNP [dm3] 3R_17110006_SNP [dm6]	C	T	3.888e^-4	0.998	INTRON cher
X	16034553	X_16034553_SNP [dm3] X_16140520_SNP [dm6]	C	A	3.892e^-4	0.998	INTRON disco-r
3R	21649032	3R_21649032_INS [dm3] 3R_25823310_INS [dm6]	T	TCTGGAAAA	3.897e^-4	0.998	DOWNSTREAM CR44949 INTERGENIC
2L	9073734	2L_9073734_SNP [dm3] 2L_9073734_SNP [dm6]	A	G	3.900e^-4	0.998	INTERGENIC
X	18693083	X_18693083_SNP [dm3] X_18799050_SNP [dm6]	G	C	3.902e^-4	0.998	INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14457458	3R_14457458_SNP [dm3] 3R_18631736_SNP [dm6]	G	A	3.916e^-4	0.998	INTRON qin & 1 other
2L	11326632	2L_11326632_SNP [dm3] 2L_11326632_SNP [dm6]	G	A	3.926e^-4	0.998	INTERGENIC
2R	5739865	2R_5739865_SNP [dm3] 2R_9852360_SNP [dm6]	C	T	3.933e^-4	0.998	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20684642	3R_20684642_SNP [dm3] 3R_24858920_SNP [dm6]	G	A	3.934e^-4	0.998	SYNONYMOUS_CODING ppk22 DOWNSTREAM ppk22 & 1 other
2R	7388396	2R_7388396_MNP [dm3] 2R_11500891_MNP [dm6]	GGA	CCT	3.942e^-4	0.998	INTRON inv
3R	4332846	3R_4332846_SNP [dm3] 3R_8507124_SNP [dm6]	A	C	3.943e^-4	0.998	INTERGENIC
3R	22668619	3R_22668619_SNP [dm3] 3R_26842897_SNP [dm6]	T	C	3.955e^-4	0.998	UTR_3_PRIME Lerp DOWNSTREAM Tl
3R	20684594	3R_20684594_SNP [dm3] 3R_24858872_SNP [dm6]	G	A	3.957e^-4	0.998	SYNONYMOUS_CODING ppk22 DOWNSTREAM ppk22
3L	9426072	3L_9426072_SNP [dm3] 3L_9432972_SNP [dm6]	A	T	3.960e^-4	0.998	DOWNSTREAM CG42526 INTRON MTF-1
2L	20392885	2L_20392885_SNP [dm3] 2L_20392885_SNP [dm6]	T	C	3.971e^-4	0.998	INTRON CG10947
2R	14678339	2R_14678339_SNP [dm3] 2R_18790834_SNP [dm6]	C	T	3.995e^-4	0.998	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9654879	2L_9654879_SNP [dm3] 2L_9654879_SNP [dm6]	C	A	4.003e^-4	0.998	NON_SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20045263	2L_20045263_SNP [dm3] 2L_20045263_SNP [dm6]	C	T	4.008e^-4	0.998	INTRON sNPF	transposable element FlyBase
2L	17882455	2L_17882455_SNP [dm3] 2L_17882455_SNP [dm6]	T	C	4.012e^-4	0.998	INTERGENIC
X	9930618	X_9930618_SNP [dm3] X_10036585_SNP [dm6]	C	T	4.024e^-4	0.998	SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6761050	2R_6761050_SNP [dm3] 2R_10873545_SNP [dm6]	A	T	4.025e^-4	0.998	INTRON CG30015	TF binding site BDTNP1_TFBS_dl
3R	5456295	3R_5456295_SNP [dm3] 3R_9630573_SNP [dm6]	A	T	4.027e^-4	0.998	INTRON Crc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	19067583	3R_19067583_INS [dm3] 3R_23241861_INS [dm6]	A	AA	4.030e^-4	0.998	INTRON CG4467
2L	9654688	2L_9654688_SNP [dm3] 2L_9654688_SNP [dm6]	T	A	4.033e^-4	0.998	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17165066	2L_17165066_SNP [dm3] 2L_17165066_SNP [dm6]	G	C	4.047e^-4	0.998	INTRON beat-IIIa & 1 other
2L	3339181	2L_3339181_SNP [dm3] 2L_3339181_SNP [dm6]	T	C	4.048e^-4	0.998	INTRON E23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
2R	9462026	2R_9462026_SNP [dm3] 2R_13574521_SNP [dm6]	T	A	4.049e^-4	0.998	UPSTREAM CR44365 & 1 other INTERGENIC
2R	9372838	2R_9372838_SNP [dm3] 2R_13485333_SNP [dm6]	T	C	4.055e^-4	0.998	START_GAINED cbc UTR_5_PRIME cbc UPSTREAM cid	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	1231482	2R_1231482_INS [dm3] 2R_5343977_INS [dm6]	C	CCCACGAATGTCTTTGT...	4.060e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
3L	8804408	3L_8804408_SNP [dm3] 3L_8811308_SNP [dm6]	T	G	4.060e^-4	0.998	DOWNSTREAM CG13309 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8989528	3L_8989528_SNP [dm3] 3L_8996428_SNP [dm6]	G	C	4.060e^-4	0.998	UPSTREAM smg INTRON smg
2L	15858331	2L_15858331_SNP [dm3] 2L_15858331_SNP [dm6]	A	G	4.065e^-4	0.998	INTERGENIC
3L	2782520	3L_2782520_SNP [dm3] 3L_2782520_SNP [dm6]	G	T	4.067e^-4	0.998	UTR_5_PRIME pgant6 DOWNSTREAM mRpS35 INTRON pgant6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9531671	2R_9531671_SNP [dm3] 2R_13644166_SNP [dm6]	A	C	4.070e^-4	0.998	INTRON fas
3R	26040337	3R_26040337_SNP [dm3] 3R_30214615_SNP [dm6]	G	A	4.076e^-4	0.998	UPSTREAM CecB INTERGENIC
3L	3683265	3L_3683265_SNP [dm3] 3L_3683265_SNP [dm6]	A	G	4.080e^-4	0.998	INTERGENIC
3R	4948178	3R_4948178_SNP [dm3] 3R_9122456_SNP [dm6]	A	G	4.101e^-4	0.998	INTRON pum
3L	974004	3L_974004_DEL [dm3] 3L_974004_DEL [dm6]	CACTCACGATTGGCATTGGA...	C	4.105e^-4	0.998	INTRON Glut1
2L	17366994	2L_17366994_SNP [dm3] 2L_17366994_SNP [dm6]	T	A	4.109e^-4	0.998	DOWNSTREAM Lrch INTERGENIC
2L	12184924	2L_12184924_SNP [dm3] 2L_12184924_SNP [dm6]	A	G	4.114e^-4	0.998	INTRON aret
2L	9891533	2L_9891533_SNP [dm3] 2L_9891533_SNP [dm6]	A	G	4.119e^-4	0.998	SYNONYMOUS_CODING mtDNA-helicase UPSTREAM CG34183 DOWNSTREAM CG4537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7416558	2L_7416558_SNP [dm3] 2L_7416558_SNP [dm6]	T	A	4.129e^-4	0.998	INTRON chm
3R	22903887	3R_22903887_SNP [dm3] 3R_27078165_SNP [dm6]	T	A	4.133e^-4	0.998	INTRON CG14257
2L	20566194	2L_20566194_SNP [dm3] 2L_20566194_SNP [dm6]	G	T	4.135e^-4	0.998	INTRON CR45347
2R	6763061	2R_6763061_SNP [dm3] 2R_10875556_SNP [dm6]	T	C	4.136e^-4	0.998	UPSTREAM nclb & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Ubx
2R	1131032	2R_1131032_SNP [dm3] 2R_5243527_SNP [dm6]	C	T	4.137e^-4	0.998	NON_SYNONYMOUS_CODING Nipped-A INTRON Nipped-A	TF binding site BDTNP1_TFBS_twi transposable element FlyBase
3L	10166352	3L_10166352_SNP [dm3] 3L_10173252_SNP [dm6]	C	A	4.139e^-4	0.998	INTRON dpr10
X	6469837	X_6469837_SNP [dm3] X_6575804_SNP [dm6]	T	C	4.156e^-4	0.998	INTRON CG34417
3R	4113031	3R_4113031_SNP [dm3] 3R_8287309_SNP [dm6]	C	A	4.164e^-4	0.998	UPSTREAM CG11671 EXON CR44318	TF binding site BDTNP1_TFBS_dl
2R	5739790	2R_5739790_SNP [dm3] 2R_9852285_SNP [dm6]	G	C	4.165e^-4	0.998	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2780281	3L_2780281_SNP [dm3] 3L_2780281_SNP [dm6]	C	T	4.168e^-4	0.998	SYNONYMOUS_CODING Atg2 UPSTREAM mRpS35	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16643841	3R_16643841_SNP [dm3] 3R_20818119_SNP [dm6]	A	T	4.170e^-4	0.998	INTRON CG17270
3R	23671015	3R_23671015_SNP [dm3] 3R_27845293_SNP [dm6]	A	T	4.173e^-4	0.998	UPSTREAM Or98a INTRON CG34353 & 1 other
3R	5114847	3R_5114847_SNP [dm3] 3R_9289125_SNP [dm6]	T	A	4.177e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_sna
X	10428498	X_10428498_SNP [dm3] X_10534465_SNP [dm6]	A	T	4.177e^-4	0.998	INTRON spri
3L	10229733	3L_10229733_SNP [dm3] 3L_10236633_SNP [dm6]	G	A	4.189e^-4	0.998	EXON CR44542
3R	25474903	3R_25474903_SNP [dm3] 3R_29649181_SNP [dm6]	A	C	4.189e^-4	0.998	INTRON Dop1R2
2L	12415089	2L_12415089_SNP [dm3] 2L_12415089_SNP [dm6]	G	A	4.190e^-4	0.998	INTRON vir-1
3R	14875847	3R_14875847_SNP [dm3] 3R_19050125_SNP [dm6]	C	T	4.191e^-4	0.998	INTRON cdi
3R	14875852	3R_14875852_SNP [dm3] 3R_19050130_SNP [dm6]	A	G	4.191e^-4	0.998	INTRON cdi
2R	17315756	2R_17315756_SNP [dm3] 2R_21428251_SNP [dm6]	T	G	4.196e^-4	0.998	INTRON Sdc
3L	850394	3L_850394_SNP [dm3] 3L_850394_SNP [dm6]	G	A	4.208e^-4	0.998	UPSTREAM CG13890 INTRON CG13889	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	11646584	2L_11646584_SNP [dm3] 2L_11646584_SNP [dm6]	T	G	4.224e^-4	0.998	SYNONYMOUS_CODING CG6614
3L	5808940	3L_5808940_SNP [dm3] 3L_5815840_SNP [dm6]	T	A	4.231e^-4	0.998	INTRON vn
3L	16981193	3L_16981193_INS [dm3] 3L_16988093_INS [dm6]	T	TTTCGT	4.236e^-4	0.998	INTRON Exn
X	9930463	X_9930463_SNP [dm3] X_10036430_SNP [dm6]	A	T	4.251e^-4	0.998	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	19625999	2L_19625999_DEL [dm3] 2L_19625999_DEL [dm6]	TGCACTA	T	4.256e^-4	0.998	INTRON Lar
3L	855611	3L_855611_SNP [dm3] 3L_855611_SNP [dm6]	A	G	4.260e^-4	0.998	INTRON dpr20
2L	1693246	2L_1693246_SNP [dm3] 2L_1693246_SNP [dm6]	G	A	4.264e^-4	0.998	INTRON chinmo
3L	14908448	3L_14908448_SNP [dm3] 3L_14915348_SNP [dm6]	T	C	4.283e^-4	0.998	INTRON DCX-EMAP
2R	16664958	2R_16664958_SNP [dm3] 2R_20777453_SNP [dm6]	A	G	4.305e^-4	0.998	SYNONYMOUS_CODING CG43710 DOWNSTREAM CG43711
3R	18204170	3R_18204170_SNP [dm3] 3R_22378448_SNP [dm6]	G	T	4.314e^-4	0.998	NON_SYNONYMOUS_CODING CG18596
3R	21430454	3R_21430454_SNP [dm3] 3R_25604732_SNP [dm6]	T	A	4.316e^-4	0.998	UTR_3_PRIME msi INTRON ymp
2L	20327098	2L_20327098_DEL [dm3] 2L_20327098_DEL [dm6]	GAGCTGTTTACTTATA...	G	4.320e^-4	0.998	INTRON spir
2L	13908354	2L_13908354_SNP [dm3] 2L_13908354_SNP [dm6]	C	T	4.320e^-4	0.998	SYNONYMOUS_CODING Ance UPSTREAM Ance-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2780900	3L_2780900_SNP [dm3] 3L_2780900_SNP [dm6]	G	T	4.327e^-4	0.998	UTR_5_PRIME mRpS35 DOWNSTREAM Atg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_ttk
2R	1392361	2R_1392361_SNP [dm3] 2R_5504856_SNP [dm6]	G	T	4.328e^-4	0.998	INTRON CG30438 & 1 other
2R	11961280	2R_11961280_SNP [dm3] 2R_16073775_SNP [dm6]	G	A	4.329e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5441936	2L_5441936_SNP [dm3] 2L_5441936_SNP [dm6]	G	A	4.331e^-4	0.998	INTERGENIC
2L	2003586	2L_2003586_SNP [dm3] 2L_2003586_SNP [dm6]	C	T	4.339e^-4	0.998	INTRON CG33543 EXON CR43464
3L	16267112	3L_16267112_SNP [dm3] 3L_16274012_SNP [dm6]	T	C	4.348e^-4	0.998	DOWNSTREAM CG13066 INTERGENIC
2L	1352816	2L_1352816_SNP [dm3] 2L_1352816_SNP [dm6]	T	A	4.353e^-4	0.998	UTR_5_PRIME CG5556 DOWNSTREAM CG5561
X	16343348	X_16343348_SNP [dm3] X_16449315_SNP [dm6]	T	A	4.354e^-4	0.998	UTR_5_PRIME Rbp2 INTRON Rbp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	2720723	3R_2720723_SNP [dm3] 3R_6895001_SNP [dm6]	A	T	4.354e^-4	0.998	DOWNSTREAM CR44932 INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	24422128	3R_24422128_SNP [dm3] 3R_28596406_SNP [dm6]	C	A	4.368e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5862491	2L_5862491_SNP [dm3] 2L_5862491_SNP [dm6]	C	T	4.374e^-4	0.998	INTRON rau
2R	5737096	2R_5737096_SNP [dm3] 2R_9849591_SNP [dm6]	C	T	4.389e^-4	0.998	SYNONYMOUS_CODING CG1671	TF binding site mE1_TFBS_sens
2R	6121836	2R_6121836_SNP [dm3] 2R_10234331_SNP [dm6]	C	G	4.389e^-4	0.998	UTR_5_PRIME Hr46 & 1 other INTRON Hr46	TF binding site BDTNP1_TFBS_dl
X	3442112	X_3442112_SNP [dm3] X_3548079_SNP [dm6]	C	G	4.402e^-4	0.998	INTRON CG32791
3L	2765176	3L_2765176_SNP [dm3] 3L_2765176_SNP [dm6]	A	G	4.405e^-4	0.998	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	9487488	3L_9487488_SNP [dm3] 3L_9494388_SNP [dm6]	A	G	4.418e^-4	0.998	DOWNSTREAM path INTERGENIC
3R	24709360	3R_24709360_SNP [dm3] 3R_28883638_SNP [dm6]	G	C	4.431e^-4	0.998	UPSTREAM CG14526 DOWNSTREAM CG14527 INTRON CG33203
3R	9758319	3R_9758319_SNP [dm3] 3R_13932597_SNP [dm6]	A	C	4.432e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	12213520	2L_12213520_SNP [dm3] 2L_12213520_SNP [dm6]	A	C	4.435e^-4	0.998	INTRON aret
3L	11284536	3L_11284536_SNP [dm3] 3L_11291436_SNP [dm6]	A	C	4.446e^-4	0.998	INTRON CG6175
3R	21057331	3R_21057331_SNP [dm3] 3R_25231609_SNP [dm6]	T	C	4.452e^-4	0.998	INTRON Cad96Cb
3L	1731139	3L_1731139_SNP [dm3] 3L_1731139_SNP [dm6]	G	C	4.454e^-4	0.998	UTR_3_PRIME Oseg4 UPSTREAM drpr DOWNSTREAM Oseg4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15120052	X_15120052_INS [dm3] X_15226019_INS [dm6]	A	AGGAGCA	4.456e^-4	0.998	EXON CR44430
3L	2540807	3L_2540807_SNP [dm3] 3L_2540807_SNP [dm6]	A	G	4.459e^-4	0.998	INTRON Spn
2R	6781977	2R_6781977_SNP [dm3] 2R_10894472_SNP [dm6]	T	C	4.465e^-4	0.998	UTR_5_PRIME CG12942 UPSTREAM cag	TF binding site BDTNP1_TFBS_dl
X	3442090	X_3442090_SNP [dm3] X_3548057_SNP [dm6]	C	A	4.471e^-4	0.998	INTRON CG32791
2R	5306246	2R_5306246_DEL [dm3] 2R_9418741_DEL [dm6]	CACT	C	4.491e^-4	0.998	DOWNSTREAM wun2 INTERGENIC
2L	12467984	2L_12467984_SNP [dm3] 2L_12467984_SNP [dm6]	A	T	4.495e^-4	0.998	INTRON bun	TF binding site mE1_TFBS_kn
3L	18916225	3L_18916225_SNP [dm3] 3L_18923125_SNP [dm6]	A	T	4.525e^-4	0.998	UTR_3_PRIME CG32204
2L	1083889	2L_1083889_SNP [dm3] 2L_1083889_SNP [dm6]	A	G	4.527e^-4	0.998	UTR_3_PRIME Atg4a & 1 other DOWNSTREAM Atg4a	TF binding site mE1_TFBS_cad
2R	9372814	2R_9372814_SNP [dm3] 2R_13485309_SNP [dm6]	A	T	4.528e^-4	0.998	UTR_5_PRIME cbc UPSTREAM cid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	12295381	X_12295381_SNP [dm3] X_12401348_SNP [dm6]	T	A	4.531e^-4	0.998	INTERGENIC
X	12295401	X_12295401_SNP [dm3] X_12401368_SNP [dm6]	T	G	4.531e^-4	0.998	INTERGENIC
3R	14134949	3R_14134949_SNP [dm3] 3R_18309227_SNP [dm6]	C	G	4.553e^-4	0.998	UTR_5_PRIME PKD
2R	10219418	2R_10219418_SNP [dm3] 2R_14331913_SNP [dm6]	C	T	4.557e^-4	0.998	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	19670868	2R_19670868_SNP [dm3] 2R_23783345_SNP [dm6]	G	C	4.580e^-4	0.998	INTRON CG9850
3L	19344048	3L_19344048_SNP [dm3] 3L_19350948_SNP [dm6]	T	G	4.587e^-4	0.998	INTRON CG32206	TF binding site mE1_TFBS_cad
X	20524052	X_20524052_SNP [dm3] X_20653025_SNP [dm6]	C	T	4.588e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	5197966	3R_5197966_SNP [dm3] 3R_9372244_SNP [dm6]	T	G	4.592e^-4	0.998	NON_SYNONYMOUS_CODING FER UPSTREAM FER INTRON FER
3L	17825392	3L_17825392_SNP [dm3] 3L_17832292_SNP [dm6]	T	G	4.595e^-4	0.998	DOWNSTREAM CG32188 INTRON Grd
2R	16664953	2R_16664953_MNP [dm3] 2R_20777448_MNP [dm6]	TAA	AGT	4.603e^-4	0.998	NON_SYNONYMOUS_CODING CG43710 DOWNSTREAM CG43711
2R	6116328	2R_6116328_SNP [dm3] 2R_10228823_SNP [dm6]	A	G	4.605e^-4	0.998	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3546524	2L_3546524_DEL [dm3] 2L_3546524_DEL [dm6]	AGAAAATATA	A	4.606e^-4	0.998	INTRON drm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5140525	3L_5140525_SNP [dm3] 3L_5147425_SNP [dm6]	C	T	4.608e^-4	0.998	INTRON Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	12295400	X_12295400_SNP [dm3] X_12401367_SNP [dm6]	C	A	4.616e^-4	0.998	INTERGENIC
2L	7186827	2L_7186827_SNP [dm3] 2L_7186827_SNP [dm6]	C	A	4.637e^-4	0.998	SPLICE_SITE_REGION CG4496 INTRON CG4496	TF binding site mE1_TFBS_HSA
3L	4812113	3L_4812113_SNP [dm3] 3L_4812113_SNP [dm6]	A	G	4.649e^-4	0.998	SYNONYMOUS_CODING Dhc64C INTRON Dhc64C
2L	802624	2L_802624_SNP [dm3] 2L_802624_SNP [dm6]	G	T	4.649e^-4	0.998	INTERGENIC
2R	1181345	2R_1181345_SNP [dm3] 2R_5293840_SNP [dm6]	T	A	4.656e^-4	0.998	UPSTREAM d4 INTRON d4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9368222	2R_9368222_SNP [dm3] 2R_13480717_SNP [dm6]	G	A	4.657e^-4	0.998	INTRON arr
3R	21914468	3R_21914468_SNP [dm3] 3R_26088746_SNP [dm6]	T	A	4.658e^-4	0.998	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	14905435	2R_14905435_SNP [dm3] 2R_19017930_SNP [dm6]	T	A	4.697e^-4	0.998	INTERGENIC
3L	1986883	3L_1986883_SNP [dm3] 3L_1986883_SNP [dm6]	A	G	4.698e^-4	0.998	INTERGENIC
3L	1571345	3L_1571345_SNP [dm3] 3L_1571345_SNP [dm6]	C	T	4.710e^-4	0.998	UPSTREAM CG12004 INTRON CG12004
X	16559754	X_16559754_SNP [dm3] X_16665721_SNP [dm6]	T	A	4.714e^-4	0.998	INTRON r
2L	20332074	2L_20332074_SNP [dm3] 2L_20332074_SNP [dm6]	C	T	4.715e^-4	0.998	INTRON spir
2R	6968892	2R_6968892_SNP [dm3] 2R_11081387_SNP [dm6]	T	A	4.716e^-4	0.998	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9868542	3L_9868542_SNP [dm3] 3L_9875442_SNP [dm6]	T	C	4.718e^-4	0.998	UPSTREAM CR45406 INTERGENIC
2R	20121814	2R_20121814_SNP [dm3] 2R_24234291_SNP [dm6]	T	A	4.722e^-4	0.998	INTERGENIC
2L	3678948	2L_3678948_SNP [dm3] 2L_3678948_SNP [dm6]	C	T	4.724e^-4	0.998	INTRON CG34340
X	12879296	X_12879296_SNP [dm3] X_12985263_SNP [dm6]	T	A	4.746e^-4	0.998	DOWNSTREAM CG32643 INTERGENIC
2L	12362422	2L_12362422_SNP [dm3] 2L_12362422_SNP [dm6]	A	T	4.767e^-4	0.998	INTRON bru-2
2L	10873231	2L_10873231_SNP [dm3] 2L_10873231_SNP [dm6]	T	A	4.772e^-4	0.998	DOWNSTREAM CR45454 INTERGENIC
3L	12520167	3L_12520167_SNP [dm3] 3L_12527067_SNP [dm6]	A	T	4.777e^-4	0.998	UPSTREAM eIF-2beta DOWNSTREAM nst INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15961164	2L_15961164_SNP [dm3] 2L_15961164_SNP [dm6]	G	A	4.782e^-4	0.998	INTRON beat-Ib EXON CR43803
2L	7039725	2L_7039725_SNP [dm3] 2L_7039725_SNP [dm6]	C	A	4.789e^-4	0.998	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23851063	3R_23851063_SNP [dm3] 3R_28025341_SNP [dm6]	G	T	4.791e^-4	0.998	INTERGENIC
2L	17296254	2L_17296254_SNP [dm3] 2L_17296254_SNP [dm6]	G	C	4.801e^-4	0.998	INTERGENIC
X	8299235	X_8299235_SNP [dm3] X_8405202_SNP [dm6]	T	C	4.816e^-4	0.998	SYNONYMOUS_CODING CG11190 DOWNSTREAM CG10555	TF binding site mE1_TFBS_cad
3L	13417182	3L_13417182_SNP [dm3] 3L_13424082_SNP [dm6]	T	C	4.816e^-4	0.998	SYNONYMOUS_CODING CG33263 DOWNSTREAM CG14106
3L	15115456	3L_15115456_DEL [dm3] 3L_15122356_DEL [dm6]	AA	A	4.828e^-4	0.998	DOWNSTREAM CG32847 INTRON Cep135 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	6385895	2L_6385895_SNP [dm3] 2L_6385895_SNP [dm6]	T	G	4.832e^-4	0.998	SPLICE_SITE_REGION CG42368 UPSTREAM CG42370 INTRON CG42368
3L	15115377	3L_15115377_SNP [dm3] 3L_15122277_SNP [dm6]	A	T	4.839e^-4	0.998	UTR_3_PRIME CG32847 INTRON Cep135 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	15723060	3L_15723060_SNP [dm3] 3L_15729960_SNP [dm6]	A	C	4.847e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	10456955	2L_10456955_SNP [dm3] 2L_10456955_SNP [dm6]	T	C	4.863e^-4	0.998	UPSTREAM CG5322 & 1 other INTRON CG5322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3025744	3L_3025744_SNP [dm3] 3L_3025744_SNP [dm6]	A	G	4.865e^-4	0.998	SYNONYMOUS_CODING aly	TF binding site mE1_TFBS_h
3L	14185964	3L_14185964_SNP [dm3] 3L_14192864_SNP [dm6]	T	C	4.869e^-4	0.998	INTRON nuf
2R	14425246	2R_14425246_SNP [dm3] 2R_18537741_SNP [dm6]	T	C	4.875e^-4	0.998	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2798615	3L_2798615_SNP [dm3] 3L_2798615_SNP [dm6]	T	G	4.878e^-4	0.998	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15094562	2L_15094562_SNP [dm3] 2L_15094562_SNP [dm6]	C	T	4.881e^-4	0.998	INTRON CG15270
2R	14108056	2R_14108056_SNP [dm3] 2R_18220551_SNP [dm6]	A	G	4.886e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_cad
3R	7829320	3R_7829320_SNP [dm3] 3R_12003598_SNP [dm6]	C	T	4.891e^-4	0.998	DOWNSTREAM Ect3 INTRON Tk
2L	17580855	2L_17580855_SNP [dm3] 2L_17580855_SNP [dm6]	T	A	4.896e^-4	0.998	DOWNSTREAM CR45698 INTERGENIC
2L	3599979	2L_3599979_SNP [dm3] 2L_3599979_SNP [dm6]	G	C	4.896e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4722391	3L_4722391_SNP [dm3] 3L_4722391_SNP [dm6]	C	T	4.901e^-4	0.998	INTRON RhoGEF64C
2R	4791173	2R_4791173_SNP [dm3] 2R_8903668_SNP [dm6]	G	A	4.902e^-4	0.998	UTR_3_PRIME Ggamma1 DOWNSTREAM Ggamma1
2L	2619058	2L_2619058_SNP [dm3] 2L_2619058_SNP [dm6]	C	T	4.926e^-4	0.998	INTERGENIC
2L	2064641	2L_2064641_SNP [dm3] 2L_2064641_SNP [dm6]	T	A	4.928e^-4	0.998	INTRON dpr3
3L	10872776	3L_10872776_SNP [dm3] 3L_10879676_SNP [dm6]	C	T	4.935e^-4	0.998	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	16642021	3R_16642021_SNP [dm3] 3R_20816299_SNP [dm6]	C	A	4.947e^-4	0.998	UPSTREAM Fancd2 DOWNSTREAM CG17270 INTERGENIC
2R	19477151	2R_19477151_SNP [dm3] 2R_23589628_SNP [dm6]	G	T	4.947e^-4	0.998	INTRON apt	TF binding site mE1_TFBS_inv
3R	5456323	3R_5456323_SNP [dm3] 3R_9630601_SNP [dm6]	T	C	4.949e^-4	0.998	INTRON Crc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	13076831	2L_13076831_SNP [dm3] 2L_13076831_SNP [dm6]	T	C	4.949e^-4	0.998	INTERGENIC
2L	13896764	2L_13896764_SNP [dm3] 2L_13896764_SNP [dm6]	G	A	4.966e^-4	0.998	INTRON CenG1A	TF binding site mE1_TFBS_cad
3R	5197880	3R_5197880_SNP [dm3] 3R_9372158_SNP [dm6]	A	G	4.968e^-4	0.998	SYNONYMOUS_CODING FER UPSTREAM FER INTRON FER
2R	6969639	2R_6969639_SNP [dm3] 2R_11082134_SNP [dm6]	C	T	4.977e^-4	0.998	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25646100	3R_25646100_SNP [dm3] 3R_29820378_SNP [dm6]	C	T	4.988e^-4	0.998	INTRON neo
2R	12005730	2R_12005730_SNP [dm3] 2R_16118225_SNP [dm6]	A	G	4.993e^-4	0.998	NON_SYNONYMOUS_CODING Jhedup	TF binding site BDTNP1_TFBS_twi mE1_TFBS_ftz_f1 mE1_TFBS_HSA mE1_TFBS_sens
2L	11496913	2L_11496913_SNP [dm3] 2L_11496913_SNP [dm6]	A	C	5.008e^-4	0.998	SYNONYMOUS_CODING CG6488	TF binding site mE1_TFBS_cad
3L	14913533	3L_14913533_SNP [dm3] 3L_14920433_SNP [dm6]	T	A	5.016e^-4	0.998	INTRON DCX-EMAP
3R	14875856	3R_14875856_SNP [dm3] 3R_19050134_SNP [dm6]	A	G	5.017e^-4	0.998	INTRON cdi
3R	9038538	3R_9038538_DEL [dm3] 3R_13212816_DEL [dm6]	GG	G	5.022e^-4	0.998	INTRON CG8483
2R	9450588	2R_9450588_SNP [dm3] 2R_13563083_SNP [dm6]	G	A	5.023e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	25112021	3R_25112021_SNP [dm3] 3R_29286299_SNP [dm6]	A	G	5.027e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	21187692	3L_21187692_SNP [dm3] 3L_21194592_SNP [dm6]	G	A	5.037e^-4	0.998	DOWNSTREAM park INTERGENIC	TF binding site mE1_TFBS_cad
2L	7537742	2L_7537742_SNP [dm3] 2L_7537742_SNP [dm6]	A	C	5.049e^-4	0.998	INTRON RapGAP1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	10766644	X_10766644_SNP [dm3] X_10872611_SNP [dm6]	C	T	5.057e^-4	0.998	SYNONYMOUS_CODING CG1637 INTRON CG1637	TF binding site mE1_TFBS_cad
2L	5623525	2L_5623525_SNP [dm3] 2L_5623525_SNP [dm6]	G	A	5.063e^-4	0.998	SYNONYMOUS_CODING Cyp6a16	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15940200	2R_15940200_SNP [dm3] 2R_20052695_SNP [dm6]	A	G	5.075e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6112029	2R_6112029_SNP [dm3] 2R_10224524_SNP [dm6]	C	T	5.077e^-4	0.998	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3764703	2L_3764703_SNP [dm3] 2L_3764703_SNP [dm6]	A	C	5.084e^-4	0.998	SYNONYMOUS_CODING CG43707 UPSTREAM CG43703	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18411224	3R_18411224_SNP [dm3] 3R_22585502_SNP [dm6]	C	T	5.104e^-4	0.998	SYNONYMOUS_CODING CG6937 UPSTREAM CG33107 DOWNSTREAM btn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	8106677	3R_8106677_SNP [dm3] 3R_12280955_SNP [dm6]	C	A	5.109e^-4	0.998	UPSTREAM svp INTRON svp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	15092809	2L_15092809_SNP [dm3] 2L_15092809_SNP [dm6]	T	C	5.115e^-4	0.998	INTRON CG15270
3L	13096359	3L_13096359_SNP [dm3] 3L_13103259_SNP [dm6]	A	T	5.123e^-4	0.998	INTERGENIC
3L	18916243	3L_18916243_SNP [dm3] 3L_18923143_SNP [dm6]	T	C	5.131e^-4	0.998	UTR_3_PRIME CG32204
X	9634809	X_9634809_SNP [dm3] X_9740776_SNP [dm6]	G	A	5.135e^-4	0.998	INTRON Sp1	TF binding site BDTNP1_TFBS_twi
3L	9752051	3L_9752051_SNP [dm3] 3L_9758951_SNP [dm6]	A	G	5.151e^-4	0.998	INTRON CG42268
3R	14457417	3R_14457417_SNP [dm3] 3R_18631695_SNP [dm6]	A	G	5.156e^-4	0.998	INTRON qin & 1 other
2R	5249679	2R_5249679_SNP [dm3] 2R_9362174_SNP [dm6]	G	T	5.157e^-4	0.998	DOWNSTREAM CG12158 INTRON CG13954	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	23721960	3R_23721960_INS [dm3] 3R_27896238_INS [dm6]	A	AGAGCCAGA	5.157e^-4	0.998	INTRON CG34353	TF binding site mE1_TFBS_chinmo
3L	7830355	3L_7830355_SNP [dm3] 3L_7837255_SNP [dm6]	C	A	5.163e^-4	0.998	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3R	23046918	3R_23046918_SNP [dm3] 3R_27221196_SNP [dm6]	A	G	5.167e^-4	0.998	INTERGENIC
2L	12458735	2L_12458735_SNP [dm3] 2L_12458735_SNP [dm6]	T	C	5.170e^-4	0.998	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18117611	2R_18117611_SNP [dm3] 2R_22230106_SNP [dm6]	T	C	5.172e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2765198	3L_2765198_SNP [dm3] 3L_2765198_SNP [dm6]	A	G	5.189e^-4	0.998	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	5745097	2R_5745097_SNP [dm3] 2R_9857592_SNP [dm6]	C	A	5.190e^-4	0.998	INTRON CG1516
3R	13322783	3R_13322783_SNP [dm3] 3R_17497061_SNP [dm6]	T	G	5.202e^-4	0.998	INTRON Dscam3
3R	23671227	3R_23671227_SNP [dm3] 3R_27845505_SNP [dm6]	T	C	5.208e^-4	0.998	UPSTREAM Or98a DOWNSTREAM Or98P INTRON CG34353
3R	26071254	3R_26071254_SNP [dm3] 3R_30245532_SNP [dm6]	G	A	5.210e^-4	0.998	SYNONYMOUS_CODING CG9733
3R	16204973	3R_16204973_SNP [dm3] 3R_20379251_SNP [dm6]	A	G	5.225e^-4	0.998	UTR_3_PRIME Gfrl
3L	10842896	3L_10842896_SNP [dm3] 3L_10849796_SNP [dm6]	G	T	5.225e^-4	0.998	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9376566	3R_9376566_SNP [dm3] 3R_13550844_SNP [dm6]	G	T	5.228e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20322309	2L_20322309_SNP [dm3] 2L_20322309_SNP [dm6]	G	C	5.228e^-4	0.998	INTRON spir	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	1114185	2R_1114185_SNP [dm3] 2R_5226680_SNP [dm6]	G	A	5.248e^-4	0.998	INTRON Nipped-A	transposable element FlyBase
2L	19625959	2L_19625959_MNP [dm3] 2L_19625959_MNP [dm6]	TTTC	AGAA	5.250e^-4	0.998	INTRON Lar
3L	1903244	3L_1903244_SNP [dm3] 3L_1903244_SNP [dm6]	T	C	5.255e^-4	0.998	INTRON CG1887
X	2487721	X_2487721_SNP [dm3] X_2593688_SNP [dm6]	T	C	5.271e^-4	0.998	UTR_5_PRIME egh INTRON egh	TF binding site mE1_TFBS_sens
3L	2765200	3L_2765200_SNP [dm3] 3L_2765200_SNP [dm6]	C	G	5.272e^-4	0.998	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	5739871	2R_5739871_SNP [dm3] 2R_9852366_SNP [dm6]	A	G	5.282e^-4	0.998	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2618906	2L_2618906_INS [dm3] 2L_2618906_INS [dm6]	T	TTGAAACTAT	5.303e^-4	0.998	INTERGENIC
3L	1837200	3L_1837200_SNP [dm3] 3L_1837200_SNP [dm6]	T	A	5.304e^-4	0.998	INTERGENIC
2R	10934470	2R_10934470_SNP [dm3] 2R_15046965_SNP [dm6]	G	A	5.309e^-4	0.998	INTERGENIC
2L	20331580	2L_20331580_SNP [dm3] 2L_20331580_SNP [dm6]	T	G	5.313e^-4	0.998	INTRON spir
2R	6757057	2R_6757057_SNP [dm3] 2R_10869552_SNP [dm6]	C	A	5.316e^-4	0.998	INTRON CG30015
3R	26637160	3R_26637160_SNP [dm3] 3R_30811438_SNP [dm6]	T	C	5.320e^-4	0.998	INTRON cindr
3L	4697590	3L_4697590_SNP [dm3] 3L_4697590_SNP [dm6]	T	C	5.326e^-4	0.998	UPSTREAM CG13713 INTRON RhoGEF64C	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	4697810	3L_4697810_SNP [dm3] 3L_4697810_SNP [dm6]	A	C	5.326e^-4	0.998	SYNONYMOUS_CODING CG13713 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12858283	2R_12858283_INS [dm3] 2R_16970778_INS [dm6]	T	TGGAT	5.336e^-4	0.998	EXON CR44377
2R	14457908	2R_14457908_SNP [dm3] 2R_18570403_SNP [dm6]	G	A	5.337e^-4	0.998	INTRON GEFmeso
3R	7285397	3R_7285397_DEL [dm3] 3R_11459675_DEL [dm6]	GGGTTTACTTTG...	G	5.343e^-4	0.998	INTRON CG17230 & 1 other
X	7453654	X_7453654_SNP [dm3] X_7559621_SNP [dm6]	T	C	5.348e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	10715976	2R_10715976_SNP [dm3] 2R_14828471_SNP [dm6]	A	G	5.350e^-4	0.998	INTERGENIC
2L	8076763	2L_8076763_SNP [dm3] 2L_8076763_SNP [dm6]	G	C	5.362e^-4	0.998	SYNONYMOUS_CODING Mcr	TF binding site mE1_TFBS_sens
2L	5616806	2L_5616806_INS [dm3] 2L_5616806_INS [dm6]	A	AAA	5.374e^-4	0.998	INTRON CG14010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8934019	2R_8934019_SNP [dm3] 2R_13046514_SNP [dm6]	T	G	5.386e^-4	0.998	UTR_3_PRIME CG13323 DOWNSTREAM CG13323
3R	22846697	3R_22846697_SNP [dm3] 3R_27020975_SNP [dm6]	G	T	5.387e^-4	0.998	SYNONYMOUS_CODING CG6283 INTRON RYa-R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	1148288	2R_1148288_SNP [dm3] 2R_5260783_SNP [dm6]	G	C	5.396e^-4	0.998	INTRON d4
3L	1903380	3L_1903380_INS [dm3] 3L_1903380_INS [dm6]	A	AA	5.398e^-4	0.998	INTRON CG1887
3R	15684337	3R_15684337_SNP [dm3] 3R_19858615_SNP [dm6]	C	T	5.399e^-4	0.998	INTRON Ire1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18693129	X_18693129_SNP [dm3] X_18799096_SNP [dm6]	T	C	5.404e^-4	0.998	INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9976162	3L_9976162_SNP [dm3] 3L_9983062_SNP [dm6]	G	A	5.411e^-4	0.998	INTRON dpr6
3L	3878519	3L_3878519_SNP [dm3] 3L_3878519_SNP [dm6]	G	A	5.412e^-4	0.998	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	6158781	3R_6158781_SNP [dm3] 3R_10333059_SNP [dm6]	A	G	5.417e^-4	0.998	UPSTREAM sle DOWNSTREAM CG12818 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	20981220	3L_20981220_SNP [dm3] 3L_20988120_SNP [dm6]	C	T	5.424e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	7448629	2R_7448629_SNP [dm3] 2R_11561124_SNP [dm6]	A	G	5.456e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5074603	2L_5074603_SNP [dm3] 2L_5074603_SNP [dm6]	G	A	5.459e^-4	0.998	INTRON pgant5	TF binding site mE1_TFBS_HSA
3R	20839499	3R_20839499_SNP [dm3] 3R_25013777_SNP [dm6]	C	G	5.462e^-4	0.998	SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20327181	2L_20327181_DEL [dm3] 2L_20327181_DEL [dm6]	GAAG	A	5.462e^-4	0.998	INTRON spir
2L	9654862	2L_9654862_SNP [dm3] 2L_9654862_SNP [dm6]	C	T	5.478e^-4	0.998	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21896707	X_21896707_SNP [dm3] X_22494871_SNP [dm6]	G	A	5.513e^-4	0.998	INTRON l_1_G0196	transposable element FlyBase
2L	4127701	2L_4127701_SNP [dm3] 2L_4127701_SNP [dm6]	G	A	5.524e^-4	0.998	INTERGENIC
2L	12603627	2L_12603627_SNP [dm3] 2L_12603627_SNP [dm6]	G	T	5.528e^-4	0.998	INTRON nub	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	4029955	3L_4029955_DEL [dm3] 3L_4029955_DEL [dm6]	AA	A	5.540e^-4	0.998	SPLICE_SITE_REGION Gr64b & 1 other UPSTREAM Gr64c INTRON Gr64b & 1 other
2L	20339457	2L_20339457_SNP [dm3] 2L_20339457_SNP [dm6]	T	C	5.546e^-4	0.998	INTRON spir	TF binding site mE1_TFBS_inv
X	16343064	X_16343064_SNP [dm3] X_16449031_SNP [dm6]	G	T	5.548e^-4	0.998	UPSTREAM Rbp2 & 1 other INTRON Rbp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	10503303	2R_10503303_SNP [dm3] 2R_14615798_SNP [dm6]	G	A	5.554e^-4	0.998	NON_SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12295380	X_12295380_SNP [dm3] X_12401347_SNP [dm6]	G	A	5.573e^-4	0.998	INTERGENIC
3R	20684645	3R_20684645_SNP [dm3] 3R_24858923_SNP [dm6]	T	A	5.573e^-4	0.998	SYNONYMOUS_CODING ppk22 DOWNSTREAM ppk22 & 1 other
3L	2756862	3L_2756862_SNP [dm3] 3L_2756862_SNP [dm6]	G	A	5.576e^-4	0.998	INTRON Mrtf
2L	13594611	2L_13594611_SNP [dm3] 2L_13594611_SNP [dm6]	C	T	5.579e^-4	0.998	DOWNSTREAM CG9254 INTRON kuz
3R	5457556	3R_5457556_SNP [dm3] 3R_9631834_SNP [dm6]	A	G	5.584e^-4	0.998	SYNONYMOUS_CODING SpdS UTR_5_PRIME SpdS UPSTREAM Crc DOWNSTREAM CR45053	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5457385	3R_5457385_SNP [dm3] 3R_9631663_SNP [dm6]	C	G	5.587e^-4	0.998	UTR_5_PRIME SpdS UPSTREAM SpdS & 1 other DOWNSTREAM CR45053	TF binding site mE1_TFBS_HSA
2L	5252932	2L_5252932_SNP [dm3] 2L_5252932_SNP [dm6]	G	A	5.596e^-4	0.998	INTRON tkv
3R	9551803	3R_9551803_SNP [dm3] 3R_13726081_SNP [dm6]	C	A	5.598e^-4	0.998	INTRON CG34383
2R	18772415	2R_18772415_SNP [dm3] 2R_22884892_SNP [dm6]	G	T	5.611e^-4	0.998	INTRON CG3499	TF binding site mE1_TFBS_cad
3L	16884873	3L_16884873_SNP [dm3] 3L_16891773_SNP [dm6]	A	G	5.618e^-4	0.998	INTRON Lmpt	TF binding site BDTNP1_TFBS_dl
2R	6036195	2R_6036195_SNP [dm3] 2R_10148690_SNP [dm6]	C	T	5.618e^-4	0.998	NON_SYNONYMOUS_CODING KCNQ INTRON KCNQ
2L	9870632	2L_9870632_SNP [dm3] 2L_9870632_SNP [dm6]	T	G	5.627e^-4	0.998	INTRON nAChRalpha6
2L	19625944	2L_19625944_SNP [dm3] 2L_19625944_SNP [dm6]	C	T	5.628e^-4	0.998	INTRON Lar
3L	14808083	3L_14808083_SNP [dm3] 3L_14814983_SNP [dm6]	T	C	5.630e^-4	0.998	INTRON CG17839
3R	24109698	3R_24109698_SNP [dm3] 3R_28283976_SNP [dm6]	A	G	5.640e^-4	0.998	DOWNSTREAM CG34436 INTRON CG34437
2L	15961919	2L_15961919_DEL [dm3] 2L_15961919_DEL [dm6]	AAGGGGATC	A	5.644e^-4	0.998	DOWNSTREAM CR43803 INTRON beat-Ib
2L	9073678	2L_9073678_SNP [dm3] 2L_9073678_SNP [dm6]	T	A	5.647e^-4	0.998	INTERGENIC
X	11139381	X_11139381_SNP [dm3] X_11245348_SNP [dm6]	G	A	5.658e^-4	0.998	INTRON CG44422
2L	20337765	2L_20337765_SNP [dm3] 2L_20337765_SNP [dm6]	G	A	5.668e^-4	0.998	INTRON spir
2L	9780833	2L_9780833_SNP [dm3] 2L_9780833_SNP [dm6]	C	A	5.678e^-4	0.998	INTERGENIC
3R	12677268	3R_12677268_SNP [dm3] 3R_16851546_SNP [dm6]	A	T	5.698e^-4	0.998	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	20586939	3R_20586939_SNP [dm3] 3R_24761217_SNP [dm6]	A	G	5.700e^-4	0.998	UTR_3_PRIME AstA DOWNSTREAM asp	TF binding site mE1_TFBS_cad
2R	17607559	2R_17607559_SNP [dm3] 2R_21720054_SNP [dm6]	G	A	5.704e^-4	0.998	UPSTREAM LBR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	17896788	2R_17896788_SNP [dm3] 2R_22009283_SNP [dm6]	C	T	5.708e^-4	0.998	INTRON CG34370
2R	6757051	2R_6757051_SNP [dm3] 2R_10869546_SNP [dm6]	C	T	5.708e^-4	0.998	INTRON CG30015
2R	1180928	2R_1180928_SNP [dm3] 2R_5293423_SNP [dm6]	G	T	5.726e^-4	0.998	UPSTREAM d4 INTRON d4	TF binding site BDTNP1_TFBS_dl
3L	3860022	3L_3860022_SNP [dm3] 3L_3860022_SNP [dm6]	A	G	5.749e^-4	0.998	INTRON Awh
2R	10934487	2R_10934487_SNP [dm3] 2R_15046982_SNP [dm6]	A	T	5.751e^-4	0.998	INTERGENIC
3L	16885255	3L_16885255_SNP [dm3] 3L_16892155_SNP [dm6]	A	G	5.752e^-4	0.998	INTRON Lmpt
X	21896577	X_21896577_SNP [dm3] X_22494741_SNP [dm6]	T	C	5.766e^-4	0.998	INTRON l_1_G0196	transposable element FlyBase
2L	10622529	2L_10622529_SNP [dm3] 2L_10622529_SNP [dm6]	T	A	5.770e^-4	0.998	INTRON Trim9
3R	5177569	3R_5177569_SNP [dm3] 3R_9351847_SNP [dm6]	A	G	5.770e^-4	0.998	INTRON CG45050	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	20339431	2L_20339431_INS [dm3] 2L_20339431_INS [dm6]	A	ATATGTTAGTTA...	5.771e^-4	0.998	INTRON spir	TF binding site mE1_TFBS_inv
2R	17607601	2R_17607601_INS [dm3] 2R_21720096_INS [dm6]	T	TTAC	5.772e^-4	0.998	UPSTREAM LBR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	24709136	3R_24709136_SNP [dm3] 3R_28883414_SNP [dm6]	A	G	5.774e^-4	0.998	UPSTREAM CG14526 DOWNSTREAM CG14527 INTRON CG33203
X	16842667	X_16842667_SNP [dm3] X_16948634_SNP [dm6]	A	C	5.777e^-4	0.998	UPSTREAM CG13000 INTRON RhoGAP15B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2765580	3L_2765580_SNP [dm3] 3L_2765580_SNP [dm6]	T	G	5.796e^-4	0.998	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	15152910	3R_15152910_INS [dm3] 3R_19327188_INS [dm6]	A	AA	5.802e^-4	0.998	UPSTREAM Dl & 1 other EXON CR44175
3R	11539909	3R_11539909_SNP [dm3] 3R_15714187_SNP [dm6]	G	T	5.804e^-4	0.998	INTERGENIC
2R	9249415	2R_9249415_SNP [dm3] 2R_13361910_SNP [dm6]	C	A	5.822e^-4	0.998	EXON CR45312
2R	12088459	2R_12088459_SNP [dm3] 2R_16200954_SNP [dm6]	C	T	5.825e^-4	0.998	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo
2L	801712	2L_801712_DEL [dm3] 2L_801712_DEL [dm6]	CCTTCCTAG	C	5.825e^-4	0.998	INTERGENIC
2R	14655334	2R_14655334_SNP [dm3] 2R_18767829_SNP [dm6]	T	C	5.827e^-4	0.998	INTRON Mctp
3R	5456349	3R_5456349_SNP [dm3] 3R_9630627_SNP [dm6]	G	A	5.829e^-4	0.998	INTRON Crc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	3599987	2L_3599987_SNP [dm3] 2L_3599987_SNP [dm6]	T	A	5.838e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6675198	3R_6675198_SNP [dm3] 3R_10849476_SNP [dm6]	C	T	5.844e^-4	0.998	UPSTREAM CG42394 DOWNSTREAM Cad86C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	10766438	X_10766438_SNP [dm3] X_10872405_SNP [dm6]	C	G	5.847e^-4	0.998	NON_SYNONYMOUS_CODING CG1637 INTRON CG1637	TF binding site mE1_TFBS_cad
2R	11961272	2R_11961272_SNP [dm3] 2R_16073767_SNP [dm6]	C	T	5.848e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6981921	2R_6981921_SNP [dm3] 2R_11094416_SNP [dm6]	T	C	5.855e^-4	0.998	INTRON luna	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	10238218	3L_10238218_SNP [dm3] 3L_10245118_SNP [dm6]	T	A	5.858e^-4	0.998	UPSTREAM Or67c INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	16576803	2R_16576803_SNP [dm3] 2R_20689298_SNP [dm6]	T	C	5.860e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7400275	2R_7400275_SNP [dm3] 2R_11512770_SNP [dm6]	A	G	5.861e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14443282	3L_14443282_SNP [dm3] 3L_14450182_SNP [dm6]	A	T	5.867e^-4	0.998	INTRON bbg
2R	15459738	2R_15459738_DEL [dm3] 2R_19572233_DEL [dm6]	GATATTTATTGAATAAATTA...	G	5.869e^-4	0.998	INTRON sm	TF binding site mE1_TFBS_HSA
3L	4034177	3L_4034177_SNP [dm3] 3L_4034177_SNP [dm6]	G	A	5.870e^-4	0.998	SYNONYMOUS_CODING Gr64e UTR_3_PRIME Gr64d DOWNSTREAM Gr64d EXON CR45042
3R	7099898	3R_7099898_SNP [dm3] 3R_11274176_SNP [dm6]	A	G	5.871e^-4	0.998	INTRON CR31386
2R	20181276	2R_20181276_SNP [dm3] 2R_24293753_SNP [dm6]	C	G	5.876e^-4	0.998	UPSTREAM CG3394 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	15115373	3L_15115373_DEL [dm3] 3L_15122273_DEL [dm6]	ATG	A	5.880e^-4	0.998	UTR_3_PRIME CG32847 INTRON Cep135 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	15081448	2R_15081448_SNP [dm3] 2R_19193943_SNP [dm6]	T	C	5.881e^-4	0.998	INTRON hppy
3L	3681313	3L_3681313_SNP [dm3] 3L_3681313_SNP [dm6]	C	G	5.885e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_cad
2L	20642248	2L_20642248_SNP [dm3] 2L_20642248_SNP [dm6]	G	A	5.892e^-4	0.998	DOWNSTREAM CG17470 & 1 other INTERGENIC
3R	12733648	3R_12733648_SNP [dm3] 3R_16907926_SNP [dm6]	T	C	5.908e^-4	0.998	INTRON iab-8
2L	18139809	2L_18139809_SNP [dm3] 2L_18139809_SNP [dm6]	C	G	5.924e^-4	0.998	NON_SYNONYMOUS_CODING Socs36E UTR_3_PRIME Socs36E	TF binding site mE1_TFBS_cad
2L	1943879	2L_1943879_DEL [dm3] 2L_1943879_DEL [dm6]	CAG	A	5.937e^-4	0.998	UTR_3_PRIME CG7337 DOWNSTREAM CG7337
2R	16957175	2R_16957175_SNP [dm3] 2R_21069670_SNP [dm6]	T	A	5.938e^-4	0.998	UPSTREAM Cht9 DOWNSTREAM CG10527 & 1 other INTERGENIC
3L	9526087	3L_9526087_SNP [dm3] 3L_9532987_SNP [dm6]	G	A	5.939e^-4	0.998	INTERGENIC
3R	20547989	3R_20547989_SNP [dm3] 3R_24722267_SNP [dm6]	C	G	5.946e^-4	0.998	INTRON tok
2L	4459891	2L_4459891_SNP [dm3] 2L_4459891_SNP [dm6]	T	C	5.952e^-4	0.998	UTR_5_PRIME CG15435 UPSTREAM mRpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3R	14732204	3R_14732204_SNP [dm3] 3R_18906482_SNP [dm6]	T	C	5.957e^-4	0.998	UPSTREAM EndoA & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	9354861	3L_9354861_SNP [dm3] 3L_9361761_SNP [dm6]	T	C	5.964e^-4	0.998	UTR_3_PRIME CG34455 UPSTREAM CG34456 DOWNSTREAM Klp67A
3R	9690726	3R_9690726_SNP [dm3] 3R_13865004_SNP [dm6]	G	T	5.966e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	20339421	2L_20339421_SNP [dm3] 2L_20339421_SNP [dm6]	C	A	5.973e^-4	0.998	INTRON spir	TF binding site mE1_TFBS_inv
2R	12025748	2R_12025748_SNP [dm3] 2R_16138243_SNP [dm6]	T	A	5.975e^-4	0.998	UPSTREAM Got1 DOWNSTREAM spin INTERGENIC
2R	6774431	2R_6774431_SNP [dm3] 2R_10886926_SNP [dm6]	C	A	5.985e^-4	0.998	UTR_5_PRIME CG30020 DOWNSTREAM CG18004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
2R	3911300	2R_3911300_SNP [dm3] 2R_8023795_SNP [dm6]	C	A	6.012e^-4	0.998	EXON CR45267	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3R	24649159	3R_24649159_SNP [dm3] 3R_28823437_SNP [dm6]	C	T	6.013e^-4	0.998	NON_SYNONYMOUS_CODING CG1647	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	862155	2L_862155_SNP [dm3] 2L_862155_SNP [dm6]	G	T	6.016e^-4	0.998	UTR_3_PRIME aru DOWNSTREAM CG13950	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24709169	3R_24709169_SNP [dm3] 3R_28883447_SNP [dm6]	T	G	6.023e^-4	0.998	UPSTREAM CG14526 DOWNSTREAM CG14527 INTRON CG33203
X	13039334	X_13039334_SNP [dm3] X_13145301_SNP [dm6]	C	A	6.043e^-4	0.998	INTRON CG32645
3L	3732630	3L_3732630_SNP [dm3] 3L_3732630_SNP [dm6]	A	G	6.044e^-4	0.998	INTRON CG32264
3R	18118996	3R_18118996_SNP [dm3] 3R_22293274_SNP [dm6]	T	C	6.053e^-4	0.998	DOWNSTREAM mir-1010 INTRON SKIP
3L	6998261	3L_6998261_SNP [dm3] 3L_7005161_SNP [dm6]	G	A	6.054e^-4	0.998	INTRON Mp
2L	20327165	2L_20327165_SNP [dm3] 2L_20327165_SNP [dm6]	A	G	6.059e^-4	0.998	INTRON spir
2R	6966752	2R_6966752_INS [dm3] 2R_11079247_INS [dm6]	T	GA	6.063e^-4	0.998	INTRON luna	TF binding site mE1_TFBS_chinmo
3L	13490922	3L_13490922_SNP [dm3] 3L_13497822_SNP [dm6]	G	A	6.064e^-4	0.998	INTRON Tgi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6469939	X_6469939_SNP [dm3] X_6575906_SNP [dm6]	A	C	6.064e^-4	0.998	INTRON CG34417
X	16343702	X_16343702_SNP [dm3] X_16449669_SNP [dm6]	A	T	6.069e^-4	0.998	INTRON Rbp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14791494	2L_14791494_SNP [dm3] 2L_14791494_SNP [dm6]	C	A	6.077e^-4	0.998	INTERGENIC
3R	20051147	3R_20051147_DEL [dm3] 3R_24225425_DEL [dm6]	GCTG	G	6.088e^-4	0.998	CODON_DELETION Spps	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4852907	2R_4852907_SNP [dm3] 2R_8965402_SNP [dm6]	C	G	6.091e^-4	0.998	SYNONYMOUS_CODING CG8216
3R	10533867	3R_10533867_SNP [dm3] 3R_14708145_SNP [dm6]	C	T	6.103e^-4	0.998	INTRON kibra
3L	1837217	3L_1837217_SNP [dm3] 3L_1837217_SNP [dm6]	A	G	6.109e^-4	0.998	INTERGENIC
3R	6157321	3R_6157321_SNP [dm3] 3R_10331599_SNP [dm6]	G	T	6.113e^-4	0.998	UTR_5_PRIME CG12818 UPSTREAM Bruce	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
3R	24033015	3R_24033015_SNP [dm3] 3R_28207293_SNP [dm6]	C	T	6.121e^-4	0.998	INTRON CG34354	TF binding site mE1_TFBS_chinmo
3R	19766974	3R_19766974_SNP [dm3] 3R_23941252_SNP [dm6]	C	T	6.124e^-4	0.998	INTRON Gdh
2R	16920101	2R_16920101_SNP [dm3] 2R_21032596_SNP [dm6]	G	A	6.130e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11483188	2L_11483188_SNP [dm3] 2L_11483188_SNP [dm6]	T	G	6.137e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11155370	X_11155370_SNP [dm3] X_11261337_SNP [dm6]	G	A	6.144e^-4	0.998	INTRON CG44422
X	21900409	X_21900409_SNP [dm3] X_22498573_SNP [dm6]	G	C	6.148e^-4	0.998	SYNONYMOUS_CODING l_1_G0196
2R	5741363	2R_5741363_SNP [dm3] 2R_9853858_SNP [dm6]	A	T	6.155e^-4	0.998	INTRON CG1516
2L	4133243	2L_4133243_SNP [dm3] 2L_4133243_SNP [dm6]	T	C	6.157e^-4	0.998	INTERGENIC
2L	4133244	2L_4133244_SNP [dm3] 2L_4133244_SNP [dm6]	G	A	6.157e^-4	0.998	INTERGENIC
3R	26888261	3R_26888261_SNP [dm3] 3R_31062539_SNP [dm6]	A	T	6.165e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	802481	2L_802481_SNP [dm3] 2L_802481_SNP [dm6]	C	A	6.191e^-4	0.998	INTERGENIC
2R	10445114	2R_10445114_SNP [dm3] 2R_14557609_SNP [dm6]	G	A	6.195e^-4	0.998	INTRON ttv	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	17607555	2R_17607555_SNP [dm3] 2R_21720050_SNP [dm6]	A	G	6.199e^-4	0.998	UPSTREAM LBR & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	9268166	3R_9268166_SNP [dm3] 3R_13442444_SNP [dm6]	T	C	6.210e^-4	0.998	DOWNSTREAM CR45679 INTERGENIC
2L	12454885	2L_12454885_SNP [dm3] 2L_12454885_SNP [dm6]	G	C	6.229e^-4	0.998	DOWNSTREAM bun EXON CR17024
2L	4499601	2L_4499601_SNP [dm3] 2L_4499601_SNP [dm6]	G	A	6.234e^-4	0.998	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	25007780	3R_25007780_SNP [dm3] 3R_29182058_SNP [dm6]	A	G	6.237e^-4	0.998	INTRON CG14509
2L	9329247	2L_9329247_SNP [dm3] 2L_9329247_SNP [dm6]	C	T	6.247e^-4	0.998	SYNONYMOUS_CODING CG17005 UTR_3_PRIME CG17005
X	19237866	X_19237866_INS [dm3] X_19343833_INS [dm6]	G	GT	6.250e^-4	0.998	UTR_5_PRIME nAChRalpha7
3R	18118988	3R_18118988_SNP [dm3] 3R_22293266_SNP [dm6]	C	T	6.250e^-4	0.998	DOWNSTREAM mir-1010 INTRON SKIP
X	4044128	X_4044128_SNP [dm3] X_4150095_SNP [dm6]	T	G	6.272e^-4	0.998	INTRON Fas2
2R	15875412	2R_15875412_SNP [dm3] 2R_19987907_SNP [dm6]	T	G	6.284e^-4	0.998	INTERGENIC
2R	6373723	2R_6373723_SNP [dm3] 2R_10486218_SNP [dm6]	G	C	6.287e^-4	0.998	UPSTREAM pre-lola-G INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	16559623	X_16559623_SNP [dm3] X_16665590_SNP [dm6]	A	G	6.297e^-4	0.998	INTRON r
2L	11504458	2L_11504458_SNP [dm3] 2L_11504458_SNP [dm6]	A	T	6.304e^-4	0.998	INTRON spz4
2R	11852046	2R_11852046_SNP [dm3] 2R_15964541_SNP [dm6]	A	G	6.304e^-4	0.998	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15048933	2R_15048933_SNP [dm3] 2R_19161428_SNP [dm6]	A	G	6.316e^-4	0.998	INTRON ena
2R	9774177	2R_9774177_SNP [dm3] 2R_13886672_SNP [dm6]	G	A	6.316e^-4	0.998	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
3L	1167031	3L_1167031_SNP [dm3] 3L_1167031_SNP [dm6]	A	T	6.319e^-4	0.998	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	5611930	3L_5611930_SNP [dm3] 3L_5618830_SNP [dm6]	G	A	6.320e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4811657	3L_4811657_SNP [dm3] 3L_4811657_SNP [dm6]	T	G	6.322e^-4	0.998	SYNONYMOUS_CODING Dhc64C
X	4965359	X_4965359_SNP [dm3] X_5071326_SNP [dm6]	A	G	6.337e^-4	0.998	UTR_3_PRIME CG32767 DOWNSTREAM ovo
X	14283527	X_14283527_SNP [dm3] X_14389494_SNP [dm6]	C	A	6.340e^-4	0.998	INTRON dpr8
2L	2527339	2L_2527339_SNP [dm3] 2L_2527339_SNP [dm6]	G	T	6.341e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_cad
3R	17761957	3R_17761957_SNP [dm3] 3R_21936235_SNP [dm6]	T	C	6.354e^-4	0.998	INTERGENIC
2L	9329280	2L_9329280_SNP [dm3] 2L_9329280_SNP [dm6]	G	A	6.359e^-4	0.998	SYNONYMOUS_CODING CG17005 UTR_3_PRIME CG17005
2R	7754295	2R_7754295_SNP [dm3] 2R_11866790_SNP [dm6]	T	G	6.379e^-4	0.998	UPSTREAM CR42532 & 1 other INTERGENIC
2L	5615810	2L_5615810_SNP [dm3] 2L_5615810_SNP [dm6]	A	C	6.390e^-4	0.998	DOWNSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	11935848	2L_11935848_SNP [dm3] 2L_11935848_SNP [dm6]	C	T	6.402e^-4	0.998	UPSTREAM Or33b DOWNSTREAM Or33a INTERGENIC
X	20628571	X_20628571_SNP [dm3] X_20757544_SNP [dm6]	T	G	6.406e^-4	0.998	UPSTREAM CR44710 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

mn_Resp_Hexanal phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results