DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.143e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.01035

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	10.3987	0.0055

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2534 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	6763799	2L_6763799_SNP [dm3] 2L_6763799_SNP [dm6]	G	A	3.645e^-7	0.462	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	16793321	X_16793321_SNP [dm3] X_16899288_SNP [dm6]	G	T	5.267e^-7	0.462	INTERGENIC
2R	12095301	2R_12095301_SNP [dm3] 2R_16207796_SNP [dm6]	T	C	7.388e^-7	0.462	UPSTREAM tRNA:CR30237 INTRON mrj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6764768	2L_6764768_SNP [dm3] 2L_6764768_SNP [dm6]	A	T	1.259e^-6	0.539	NON_SYNONYMOUS_CODING CG11321
2R	16860077	2R_16860077_SNP [dm3] 2R_20972572_SNP [dm6]	C	A	1.771e^-6	0.539	DOWNSTREAM CG15649 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7896426	3R_7896426_SNP [dm3] 3R_12070704_SNP [dm6]	G	A	2.724e^-6	0.539	SYNONYMOUS_CODING CG14741	TF binding site mE1_TFBS_cad
3L	12085572	3L_12085572_SNP [dm3] 3L_12092472_SNP [dm6]	A	T	3.216e^-6	0.539	INTERGENIC
X	9577253	X_9577253_SNP [dm3] X_9683220_SNP [dm6]	G	A	3.320e^-6	0.539	START_GAINED nej UTR_5_PRIME nej	TF binding site BDTNP1_TFBS_dl
3L	12085546	3L_12085546_DEL [dm3] 3L_12092446_DEL [dm6]	TTATCCCATCTTGCCATCCC...	T	3.406e^-6	0.539	INTERGENIC
3L	15780232	3L_15780232_SNP [dm3] 3L_15787132_SNP [dm6]	C	G	3.447e^-6	0.539	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	9193481	3L_9193481_SNP [dm3] 3L_9200381_SNP [dm6]	G	A	3.880e^-6	0.539	INTERGENIC
2L	10509185	2L_10509185_SNP [dm3] 2L_10509185_SNP [dm6]	A	G	4.218e^-6	0.539	SYNONYMOUS_CODING CG7384	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19763985	2L_19763985_SNP [dm3] 2L_19763985_SNP [dm6]	C	T	4.245e^-6	0.539	INTRON fbp	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	3079308	2L_3079308_SNP [dm3] 2L_3079308_SNP [dm6]	T	C	5.235e^-6	0.539	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	10601673	X_10601673_SNP [dm3] X_10707640_SNP [dm6]	A	G	5.402e^-6	0.539	INTRON X11Lbeta
2L	6763622	2L_6763622_SNP [dm3] 2L_6763622_SNP [dm6]	C	G	5.418e^-6	0.539	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	19758425	2L_19758425_SNP [dm3] 2L_19758425_SNP [dm6]	T	C	5.450e^-6	0.539	SYNONYMOUS_CODING CG10628 UPSTREAM CG10463	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	7771567	3R_7771567_SNP [dm3] 3R_11945845_SNP [dm6]	C	G	6.179e^-6	0.539	INTRON Cad87A
2L	6763634	2L_6763634_SNP [dm3] 2L_6763634_SNP [dm6]	A	G	6.659e^-6	0.539	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	17257058	2L_17257058_SNP [dm3] 2L_17257058_SNP [dm6]	C	T	6.730e^-6	0.539	INTRON beat-IIIc
2R	12188667	2R_12188667_SNP [dm3] 2R_16301162_SNP [dm6]	G	C	6.803e^-6	0.539	EXON CR45232
3R	25676438	3R_25676438_SNP [dm3] 3R_29850716_SNP [dm6]	T	G	7.329e^-6	0.539	SYNONYMOUS_CODING Cad99C	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5639983	3L_5639983_SNP [dm3] 3L_5646883_SNP [dm6]	G	A	7.566e^-6	0.539	SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6764480	2L_6764480_SNP [dm3] 2L_6764480_SNP [dm6]	T	A	8.420e^-6	0.539	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
2L	6764471	2L_6764471_SNP [dm3] 2L_6764471_SNP [dm6]	A	T	8.762e^-6	0.539	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
3R	8004763	3R_8004763_SNP [dm3] 3R_12179041_SNP [dm6]	A	G	9.081e^-6	0.539	INTERGENIC
2L	19758374	2L_19758374_SNP [dm3] 2L_19758374_SNP [dm6]	A	G	9.510e^-6	0.539	SYNONYMOUS_CODING CG10628 UPSTREAM CG10463	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
X	6884242	X_6884242_SNP [dm3] X_6990209_SNP [dm6]	C	A	1.040e^-5	0.539	INTRON ogre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
X	1578186	X_1578186_SNP [dm3] X_1684153_SNP [dm6]	A	G	1.051e^-5	0.539	SYNONYMOUS_CODING CG14797 INTRON CG32809	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2113822	3L_2113822_SNP [dm3] 3L_2113822_SNP [dm6]	A	C	1.069e^-5	0.539	INTRON sls
3L	8141914	3L_8141914_SNP [dm3] 3L_8148814_SNP [dm6]	G	A	1.081e^-5	0.539	INTRON CG13676
3L	2107883	3L_2107883_SNP [dm3] 3L_2107883_SNP [dm6]	A	G	1.101e^-5	0.539	INTRON sls	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12085443	3L_12085443_SNP [dm3] 3L_12092343_SNP [dm6]	A	G	1.145e^-5	0.539	INTERGENIC
X	12537301	X_12537301_SNP [dm3] X_12643268_SNP [dm6]	A	G	1.170e^-5	0.539	INTRON Tomosyn
X	1578330	X_1578330_SNP [dm3] X_1684297_SNP [dm6]	G	C	1.186e^-5	0.539	SYNONYMOUS_CODING CG14797 INTRON CG32809	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	21389380	3L_21389380_SNP [dm3] 3L_21396280_SNP [dm6]	A	G	1.210e^-5	0.539	INTRON rgn
2L	19759035	2L_19759035_SNP [dm3] 2L_19759035_SNP [dm6]	T	C	1.219e^-5	0.539	SYNONYMOUS_CODING CG10463 UPSTREAM CG10628	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	8529895	2R_8529895_SNP [dm3] 2R_12642390_SNP [dm6]	G	C	1.221e^-5	0.539	INTRON CG8785
X	12535155	X_12535155_SNP [dm3] X_12641122_SNP [dm6]	C	T	1.223e^-5	0.539	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
X	18912881	X_18912881_SNP [dm3] X_19018848_SNP [dm6]	C	T	1.239e^-5	0.539	INTRON CG43759	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7772063	3R_7772063_SNP [dm3] 3R_11946341_SNP [dm6]	A	T	1.244e^-5	0.539	INTRON Cad87A
3R	24813404	3R_24813404_SNP [dm3] 3R_28987682_SNP [dm6]	C	T	1.266e^-5	0.539	INTERGENIC
2R	16860089	2R_16860089_SNP [dm3] 2R_20972584_SNP [dm6]	C	A	1.401e^-5	0.539	DOWNSTREAM CG15649 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2113810	3L_2113810_SNP [dm3] 3L_2113810_SNP [dm6]	C	A	1.463e^-5	0.539	INTRON sls
3L	11828547	3L_11828547_SNP [dm3] 3L_11835447_SNP [dm6]	C	A	1.490e^-5	0.539	NON_SYNONYMOUS_CODING CG43064	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14113782	2L_14113782_SNP [dm3] 2L_14113782_SNP [dm6]	T	C	1.511e^-5	0.539	INTERGENIC
3R	24836647	3R_24836647_SNP [dm3] 3R_29010925_SNP [dm6]	T	C	1.526e^-5	0.539	INTRON wat
3L	21268943	3L_21268943_SNP [dm3] 3L_21275843_SNP [dm6]	C	A	1.609e^-5	0.539	INTRON AcCoAS	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_inv
3R	11631763	3R_11631763_SNP [dm3] 3R_15806041_SNP [dm6]	C	T	1.659e^-5	0.539	INTRON alpha-Man-IIb
3L	9213883	3L_9213883_SNP [dm3] 3L_9220783_SNP [dm6]	T	C	1.684e^-5	0.539	INTERGENIC
2L	19760880	2L_19760880_SNP [dm3] 2L_19760880_SNP [dm6]	C	T	1.695e^-5	0.539	SYNONYMOUS_CODING CG10463 DOWNSTREAM fbp	TF binding site mE1_TFBS_cad
2R	4318646	2R_4318646_SNP [dm3] 2R_8431141_SNP [dm6]	G	T	1.791e^-5	0.539	INTRON Lcp1
3L	12085478	3L_12085478_SNP [dm3] 3L_12092378_SNP [dm6]	C	T	1.829e^-5	0.539	INTERGENIC
2R	16860086	2R_16860086_SNP [dm3] 2R_20972581_SNP [dm6]	T	G	1.918e^-5	0.539	DOWNSTREAM CG15649 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19759341	2L_19759341_SNP [dm3] 2L_19759341_SNP [dm6]	A	G	1.929e^-5	0.539	SYNONYMOUS_CODING CG10463 UPSTREAM CG10628	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19496064	X_19496064_SNP [dm3] X_19602031_SNP [dm6]	A	C	1.933e^-5	0.539	UPSTREAM CG14220 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	19758702	2L_19758702_SNP [dm3] 2L_19758702_SNP [dm6]	T	C	1.943e^-5	0.539	UPSTREAM CG10463 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	6855189	3R_6855189_SNP [dm3] 3R_11029467_SNP [dm6]	C	T	1.954e^-5	0.539	INTRON CG34114
3L	2113820	3L_2113820_SNP [dm3] 3L_2113820_SNP [dm6]	C	A	1.990e^-5	0.539	INTRON sls
X	10595255	X_10595255_SNP [dm3] X_10701222_SNP [dm6]	T	C	2.017e^-5	0.539	INTRON X11Lbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
X	10595273	X_10595273_SNP [dm3] X_10701240_SNP [dm6]	A	G	2.017e^-5	0.539	INTRON X11Lbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
X	10595292	X_10595292_SNP [dm3] X_10701259_SNP [dm6]	C	T	2.017e^-5	0.539	INTRON X11Lbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
X	16516819	X_16516819_SNP [dm3] X_16622786_SNP [dm6]	A	G	2.074e^-5	0.539	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5639953	3L_5639953_SNP [dm3] 3L_5646853_SNP [dm6]	A	G	2.075e^-5	0.539	SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26094946	3R_26094946_SNP [dm3] 3R_30269224_SNP [dm6]	G	A	2.103e^-5	0.539	INTERGENIC
2L	19758443	2L_19758443_SNP [dm3] 2L_19758443_SNP [dm6]	A	G	2.112e^-5	0.539	SYNONYMOUS_CODING CG10628 UPSTREAM CG10463	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	19758659	2L_19758659_SNP [dm3] 2L_19758659_SNP [dm6]	G	A	2.112e^-5	0.539	UPSTREAM CG10463 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	19761287	2L_19761287_SNP [dm3] 2L_19761287_SNP [dm6]	G	A	2.112e^-5	0.539	DOWNSTREAM fbp & 1 other INTERGENIC
X	16793163	X_16793163_INS [dm3] X_16899130_INS [dm6]	T	TCT	2.193e^-5	0.539	INTERGENIC
3L	12719071	3L_12719071_SNP [dm3] 3L_12725971_SNP [dm6]	A	G	2.239e^-5	0.539	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13048904	3L_13048904_SNP [dm3] 3L_13055804_SNP [dm6]	G	A	2.245e^-5	0.539	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_sens
2L	19759983	2L_19759983_SNP [dm3] 2L_19759983_SNP [dm6]	G	A	2.253e^-5	0.539	SYNONYMOUS_CODING CG10463	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12085543	3L_12085543_SNP [dm3] 3L_12092443_SNP [dm6]	T	G	2.258e^-5	0.539	INTERGENIC
3L	21892462	3L_21892462_SNP [dm3] 3L_21899362_SNP [dm6]	G	A	2.260e^-5	0.539	INTRON mub
2R	17285189	2R_17285189_DEL [dm3] 2R_21397684_DEL [dm6]	AAT	G	2.288e^-5	0.539	INTRON Sdc
2L	19759359	2L_19759359_SNP [dm3] 2L_19759359_SNP [dm6]	T	C	2.305e^-5	0.539	SYNONYMOUS_CODING CG10463 UPSTREAM CG10628	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6764482	2L_6764482_SNP [dm3] 2L_6764482_SNP [dm6]	T	G	2.357e^-5	0.539	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
2L	19759215	2L_19759215_SNP [dm3] 2L_19759215_SNP [dm6]	T	G	2.358e^-5	0.539	SYNONYMOUS_CODING CG10463 UPSTREAM CG10628	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	19346171	X_19346171_SNP [dm3] X_19452138_SNP [dm6]	A	C	2.360e^-5	0.539	INTRON kek5
2L	6763703	2L_6763703_SNP [dm3] 2L_6763703_SNP [dm6]	A	G	2.379e^-5	0.539	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	11446942	2L_11446942_SNP [dm3] 2L_11446942_SNP [dm6]	G	C	2.379e^-5	0.539	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	4757168	2R_4757168_SNP [dm3] 2R_8869663_SNP [dm6]	G	A	2.399e^-5	0.539	SYNONYMOUS_CODING RyR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15163107	2L_15163107_SNP [dm3] 2L_15163107_SNP [dm6]	C	T	2.410e^-5	0.539	UTR_3_PRIME CG4168
3R	1958546	3R_1958546_SNP [dm3] 3R_6132824_SNP [dm6]	C	G	2.447e^-5	0.539	INTERGENIC
2L	19759890	2L_19759890_SNP [dm3] 2L_19759890_SNP [dm6]	G	C	2.464e^-5	0.539	SYNONYMOUS_CODING CG10463	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	20468963	X_20468963_INS [dm3] X_20597936_INS [dm6]	T	TCTCT	2.481e^-5	0.539	INTRON RunxA
X	6738259	X_6738259_SNP [dm3] X_6844226_SNP [dm6]	T	C	2.498e^-5	0.539	UPSTREAM CG4557 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	12832266	3R_12832266_DEL [dm3] 3R_17006544_DEL [dm6]	TT	T	2.578e^-5	0.541	INTRON Irc
2R	19572328	2R_19572328_SNP [dm3] 2R_23684805_SNP [dm6]	G	A	2.606e^-5	0.541	SYNONYMOUS_CODING l_2_efl DOWNSTREAM St3 INTRON St3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	16516817	X_16516817_SNP [dm3] X_16622784_SNP [dm6]	T	C	2.609e^-5	0.541	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	19758675	2L_19758675_SNP [dm3] 2L_19758675_SNP [dm6]	C	T	2.632e^-5	0.541	UPSTREAM CG10463 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
X	1578312	X_1578312_SNP [dm3] X_1684279_SNP [dm6]	T	C	2.656e^-5	0.541	SYNONYMOUS_CODING CG14797 INTRON CG32809	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24815611	3R_24815611_SNP [dm3] 3R_28989889_SNP [dm6]	A	T	2.697e^-5	0.542	INTERGENIC
3R	19840861	3R_19840861_SNP [dm3] 3R_24015139_SNP [dm6]	A	G	2.719e^-5	0.542	INTRON KrT95D
X	19346173	X_19346173_SNP [dm3] X_19452140_SNP [dm6]	T	A	2.749e^-5	0.543	INTRON kek5
X	6738232	X_6738232_SNP [dm3] X_6844199_SNP [dm6]	T	A	2.813e^-5	0.544	UPSTREAM CG4557 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	6738243	X_6738243_SNP [dm3] X_6844210_SNP [dm6]	A	G	2.813e^-5	0.544	UPSTREAM CG4557 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	7423886	X_7423886_SNP [dm3] X_7529853_SNP [dm6]	A	G	2.910e^-5	0.557	INTRON CG32719
2L	19816986	2L_19816986_SNP [dm3] 2L_19816986_SNP [dm6]	T	G	2.961e^-5	0.561	DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	6796074	3L_6796074_SNP [dm3] 3L_6802974_SNP [dm6]	G	T	3.110e^-5	0.575	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11629402	3R_11629402_SNP [dm3] 3R_15803680_SNP [dm6]	C	T	3.124e^-5	0.575	UPSTREAM alpha-Man-IIb DOWNSTREAM CG9593 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7295555	3R_7295555_SNP [dm3] 3R_11469833_SNP [dm6]	A	G	3.130e^-5	0.575	INTERGENIC
2L	19761535	2L_19761535_SNP [dm3] 2L_19761535_SNP [dm6]	C	A	3.181e^-5	0.579	DOWNSTREAM fbp & 1 other INTERGENIC
X	7425373	X_7425373_SNP [dm3] X_7531340_SNP [dm6]	A	T	3.259e^-5	0.581	INTRON CG32719
2R	4757539	2R_4757539_SNP [dm3] 2R_8870034_SNP [dm6]	C	T	3.262e^-5	0.581	SYNONYMOUS_CODING RyR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25677164	3R_25677164_SNP [dm3] 3R_29851442_SNP [dm6]	T	C	3.342e^-5	0.581	SYNONYMOUS_CODING Cad99C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19754590	2L_19754590_SNP [dm3] 2L_19754590_SNP [dm6]	T	G	3.343e^-5	0.581	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	19754595	2L_19754595_DEL [dm3] 2L_19754595_DEL [dm6]	TTAC	T	3.343e^-5	0.581	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10692042	2L_10692042_SNP [dm3] 2L_10692042_SNP [dm6]	A	C	3.507e^-5	0.598	DOWNSTREAM CG17108 INTERGENIC
3R	26122723	3R_26122723_DEL [dm3] 3R_30297001_DEL [dm6]	TTGT	T	3.507e^-5	0.598	INTRON hdc	TF binding site mE1_TFBS_inv
X	10601346	X_10601346_SNP [dm3] X_10707313_SNP [dm6]	A	G	3.619e^-5	0.611	INTRON X11Lbeta
2R	18202178	2R_18202178_SNP [dm3] 2R_22314673_SNP [dm6]	C	T	3.646e^-5	0.611	INTRON CR44758
3R	2088576	3R_2088576_SNP [dm3] 3R_6262854_SNP [dm6]	A	T	3.678e^-5	0.611	DOWNSTREAM Osi9 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24820632	3R_24820632_SNP [dm3] 3R_28994910_SNP [dm6]	T	A	3.823e^-5	0.611	INTRON wat	TF binding site mE1_TFBS_HSA
2R	13559494	2R_13559494_SNP [dm3] 2R_17671989_SNP [dm6]	A	G	3.872e^-5	0.611	SYNONYMOUS_CODING P32 DOWNSTREAM CR44404 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13970823	3L_13970823_SNP [dm3] 3L_13977723_SNP [dm6]	A	G	3.966e^-5	0.611	UTR_3_PRIME Hsc70-1 DOWNSTREAM CG17364
X	1578309	X_1578309_SNP [dm3] X_1684276_SNP [dm6]	C	T	3.973e^-5	0.611	SYNONYMOUS_CODING CG14797 INTRON CG32809	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	1796437	3R_1796437_SNP [dm3] 3R_5970715_SNP [dm6]	T	G	3.979e^-5	0.611	DOWNSTREAM CR44926 INTERGENIC
2L	19754591	2L_19754591_SNP [dm3] 2L_19754591_SNP [dm6]	C	G	4.039e^-5	0.611	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11828422	3L_11828422_SNP [dm3] 3L_11835322_SNP [dm6]	C	A	4.133e^-5	0.611	NON_SYNONYMOUS_CODING CG43064	TF binding site BDTNP1_TFBS_da
3R	8581095	3R_8581095_SNP [dm3] 3R_12755373_SNP [dm6]	T	A	4.205e^-5	0.611	INTRON beat-Vc	TF binding site mE1_TFBS_HSA
X	10595275	X_10595275_SNP [dm3] X_10701242_SNP [dm6]	A	T	4.250e^-5	0.611	INTRON X11Lbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	9735797	2R_9735797_SNP [dm3] 2R_13848292_SNP [dm6]	G	A	4.319e^-5	0.611	SYNONYMOUS_CODING CG30484	TF binding site mE1_TFBS_sens
2R	15963243	2R_15963243_SNP [dm3] 2R_20075738_SNP [dm6]	A	T	4.383e^-5	0.611	INTERGENIC	TF binding site mE1_TFBS_inv
3R	13794335	3R_13794335_SNP [dm3] 3R_17968613_SNP [dm6]	A	G	4.389e^-5	0.611	INTRON cpo
X	5574246	X_5574246_SNP [dm3] X_5680213_SNP [dm6]	T	G	4.411e^-5	0.611	UPSTREAM Gr5a & 1 other DOWNSTREAM CR44958 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3R	24833869	3R_24833869_INS [dm3] 3R_29008147_INS [dm6]	T	GCTGGCTAAAATACTC...	4.430e^-5	0.611	DOWNSTREAM mir-4947 INTRON wat
3L	8798491	3L_8798491_SNP [dm3] 3L_8805391_SNP [dm6]	C	T	4.489e^-5	0.611	SYNONYMOUS_CODING CG34427 DOWNSTREAM CG13312	TF binding site mE1_TFBS_chinmo
2R	9289693	2R_9289693_SNP [dm3] 2R_13402188_SNP [dm6]	A	T	4.512e^-5	0.611	INTERGENIC
2R	19621096	2R_19621096_SNP [dm3] 2R_23733573_SNP [dm6]	T	A	4.579e^-5	0.611	UTR_3_PRIME Sesn DOWNSTREAM mir-4979 & 1 other	TF binding site mE1_TFBS_zfh1
2L	19758676	2L_19758676_SNP [dm3] 2L_19758676_SNP [dm6]	G	A	4.581e^-5	0.611	UPSTREAM CG10463 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	11446948	2L_11446948_SNP [dm3] 2L_11446948_SNP [dm6]	T	A	4.613e^-5	0.611	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	10798277	3L_10798277_INS [dm3] 3L_10805177_INS [dm6]	T	TA	4.655e^-5	0.611	DOWNSTREAM CR44347 EXON CR44347
3L	10798285	3L_10798285_DEL [dm3] 3L_10805185_DEL [dm6]	AG	A	4.847e^-5	0.611	DOWNSTREAM CR44347 EXON CR44347
2L	19713341	2L_19713341_SNP [dm3] 2L_19713341_SNP [dm6]	C	G	4.853e^-5	0.611	INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5908095	3L_5908095_SNP [dm3] 3L_5914995_SNP [dm6]	A	G	4.853e^-5	0.611	INTRON CG13288
3L	21905685	3L_21905685_SNP [dm3] 3L_21912585_SNP [dm6]	G	A	4.874e^-5	0.611	INTRON mub	TF binding site mE1_TFBS_inv
3L	21898939	3L_21898939_SNP [dm3] 3L_21905839_SNP [dm6]	A	T	4.882e^-5	0.611	INTRON mub	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	8679925	3L_8679925_SNP [dm3] 3L_8686825_SNP [dm6]	C	A	4.890e^-5	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_bcd
2R	12094873	2R_12094873_SNP [dm3] 2R_16207368_SNP [dm6]	T	A	4.907e^-5	0.611	DOWNSTREAM tRNA:CR30237 INTRON mrj	TF binding site BDTNP1_TFBS_dl
X	5574232	X_5574232_INS [dm3] X_5680199_INS [dm6]	TT	GAA	4.913e^-5	0.611	UPSTREAM Gr5a & 1 other DOWNSTREAM CR44958 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3L	1746113	3L_1746113_SNP [dm3] 3L_1746113_SNP [dm6]	C	T	4.944e^-5	0.611	UPSTREAM CG13921 DOWNSTREAM Gk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3L	1746115	3L_1746115_DEL [dm3] 3L_1746115_DEL [dm6]	CTG	C	4.944e^-5	0.611	UPSTREAM CG13921 DOWNSTREAM Gk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3L	11828498	3L_11828498_SNP [dm3] 3L_11835398_SNP [dm6]	C	T	4.987e^-5	0.611	NON_SYNONYMOUS_CODING CG43064	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	11594134	3R_11594134_SNP [dm3] 3R_15768412_SNP [dm6]	C	T	4.997e^-5	0.611	UPSTREAM CG5623 INTERGENIC
3L	21892417	3L_21892417_SNP [dm3] 3L_21899317_SNP [dm6]	C	G	5.008e^-5	0.611	INTRON mub
2R	7505063	2R_7505063_SNP [dm3] 2R_11617558_SNP [dm6]	G	A	5.038e^-5	0.611	SYNONYMOUS_CODING Egm DOWNSTREAM CR43907	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	5574218	X_5574218_SNP [dm3] X_5680185_SNP [dm6]	A	G	5.066e^-5	0.611	UPSTREAM Gr5a & 1 other DOWNSTREAM CR44958 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3L	9625451	3L_9625451_SNP [dm3] 3L_9632351_SNP [dm6]	A	T	5.107e^-5	0.611	SYNONYMOUS_CODING fry DOWNSTREAM CG8336	TF binding site mE1_TFBS_cad
3L	2115969	3L_2115969_SNP [dm3] 3L_2115969_SNP [dm6]	G	A	5.172e^-5	0.611	UPSTREAM sls INTERGENIC	TF binding site mE1_TFBS_Trl
2R	12094870	2R_12094870_SNP [dm3] 2R_16207365_SNP [dm6]	A	G	5.208e^-5	0.611	DOWNSTREAM tRNA:CR30237 INTRON mrj	TF binding site BDTNP1_TFBS_dl
3L	21900661	3L_21900661_SNP [dm3] 3L_21907561_SNP [dm6]	A	C	5.237e^-5	0.611	UTR_5_PRIME mub
2R	13564898	2R_13564898_SNP [dm3] 2R_17677393_SNP [dm6]	A	C	5.245e^-5	0.611	INTRON Sema-1b
2L	9568149	2L_9568149_SNP [dm3] 2L_9568149_SNP [dm6]	C	G	5.332e^-5	0.611	UPSTREAM CG3838 DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	10601335	X_10601335_SNP [dm3] X_10707302_SNP [dm6]	G	A	5.373e^-5	0.611	INTRON X11Lbeta
2L	19756548	2L_19756548_SNP [dm3] 2L_19756548_SNP [dm6]	G	A	5.475e^-5	0.611	UTR_5_PRIME CG10631 DOWNSTREAM CG10628
3L	22200870	3L_22200870_SNP [dm3] 3L_22207770_SNP [dm6]	A	T	5.486e^-5	0.611	INTRON olf413
3L	4115223	3L_4115223_DEL [dm3] 3L_4115223_DEL [dm6]	AATGCA	A	5.548e^-5	0.611	INTRON Chd64
3R	25606004	3R_25606004_SNP [dm3] 3R_29780282_SNP [dm6]	T	G	5.552e^-5	0.611	NON_SYNONYMOUS_CODING fig INTRON kay	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	19761541	2L_19761541_SNP [dm3] 2L_19761541_SNP [dm6]	T	A	5.564e^-5	0.611	DOWNSTREAM fbp & 1 other INTERGENIC
3R	24822345	3R_24822345_SNP [dm3] 3R_28996623_SNP [dm6]	C	T	5.584e^-5	0.611	INTRON wat	TF binding site BDTNP1_TFBS_twi
3R	24830470	3R_24830470_SNP [dm3] 3R_29004748_SNP [dm6]	T	A	5.584e^-5	0.611	INTRON wat
X	1505606	X_1505606_SNP [dm3] X_1611573_SNP [dm6]	A	C	5.597e^-5	0.611	UPSTREAM br INTRON br & 1 other
2L	15742680	2L_15742680_INS [dm3] 2L_15742680_INS [dm6]	T	TT	5.617e^-5	0.611	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
3R	4318503	3R_4318503_SNP [dm3] 3R_8492781_SNP [dm6]	C	T	5.637e^-5	0.611	INTERGENIC
3L	2107808	3L_2107808_SNP [dm3] 3L_2107808_SNP [dm6]	A	G	5.711e^-5	0.611	INTRON sls	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	6335007	X_6335007_SNP [dm3] X_6440974_SNP [dm6]	G	T	5.763e^-5	0.611	INTRON CG42340
2R	19571787	2R_19571787_SNP [dm3] 2R_23684264_SNP [dm6]	T	C	5.767e^-5	0.611	SYNONYMOUS_CODING St3 DOWNSTREAM l_2_efl
2L	4567995	2L_4567995_SNP [dm3] 2L_4567995_SNP [dm6]	A	G	5.770e^-5	0.611	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12189089	2R_12189089_SNP [dm3] 2R_16301584_SNP [dm6]	C	T	5.786e^-5	0.611	EXON CR45232	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19754876	2L_19754876_SNP [dm3] 2L_19754876_SNP [dm6]	T	C	5.791e^-5	0.611	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15163072	2L_15163072_SNP [dm3] 2L_15163072_SNP [dm6]	G	T	5.799e^-5	0.611	UTR_3_PRIME CG4168
3R	17344092	3R_17344092_SNP [dm3] 3R_21518370_SNP [dm6]	A	T	5.834e^-5	0.611	INTERGENIC
2R	3792823	2R_3792823_SNP [dm3] 2R_7905318_SNP [dm6]	A	C	5.879e^-5	0.611	INTRON CG30377	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5264461	3R_5264461_SNP [dm3] 3R_9438739_SNP [dm6]	G	A	5.886e^-5	0.611	INTRON ps
3R	11721484	3R_11721484_SNP [dm3] 3R_15895762_SNP [dm6]	G	C	5.894e^-5	0.611	UTR_5_PRIME CG14877
3L	21900779	3L_21900779_SNP [dm3] 3L_21907679_SNP [dm6]	C	A	5.898e^-5	0.611	UTR_5_PRIME mub
3R	23771596	3R_23771596_SNP [dm3] 3R_27945874_SNP [dm6]	C	G	5.900e^-5	0.611	INTRON mfrn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	19720760	2L_19720760_SNP [dm3] 2L_19720760_SNP [dm6]	G	A	5.929e^-5	0.611	INTRON Lar
3R	24828947	3R_24828947_SNP [dm3] 3R_29003225_SNP [dm6]	G	A	5.987e^-5	0.611	INTRON wat
2L	16297540	2L_16297540_SNP [dm3] 2L_16297540_SNP [dm6]	C	T	6.004e^-5	0.611	UTR_3_PRIME heix DOWNSTREAM Cyp303a1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3741055	3R_3741055_INS [dm3] 3R_7915333_INS [dm6]	T	TTGAA	6.056e^-5	0.611	UTR_3_PRIME CG2678 INTRON CG2678	TF binding site BDTNP1_TFBS_da
3R	24811761	3R_24811761_SNP [dm3] 3R_28986039_SNP [dm6]	A	G	6.099e^-5	0.611	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19754703	2L_19754703_SNP [dm3] 2L_19754703_SNP [dm6]	C	G	6.112e^-5	0.611	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6763834	2L_6763834_SNP [dm3] 2L_6763834_SNP [dm6]	T	C	6.151e^-5	0.611	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	9525182	2R_9525182_SNP [dm3] 2R_13637677_SNP [dm6]	T	G	6.153e^-5	0.611	INTRON fas	TF binding site BDTNP1_TFBS_dl
2L	19720715	2L_19720715_SNP [dm3] 2L_19720715_SNP [dm6]	G	A	6.153e^-5	0.611	INTRON Lar
2L	15232858	2L_15232858_DEL [dm3] 2L_15232858_DEL [dm6]	GGAG	G	6.187e^-5	0.611	INTRON ZnT35C	TF binding site mE1_TFBS_cad
2L	19713229	2L_19713229_SNP [dm3] 2L_19713229_SNP [dm6]	A	T	6.207e^-5	0.611	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19759527	2L_19759527_SNP [dm3] 2L_19759527_SNP [dm6]	T	C	6.257e^-5	0.611	UPSTREAM CG10628 INTRON CG10463	TF binding site mE1_TFBS_sens
2L	6764456	2L_6764456_SNP [dm3] 2L_6764456_SNP [dm6]	A	T	6.275e^-5	0.611	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
2R	3651612	2R_3651612_SNP [dm3] 2R_7764107_SNP [dm6]	A	C	6.283e^-5	0.611	INTRON CG30497 & 1 other
3L	11629830	3L_11629830_SNP [dm3] 3L_11636730_SNP [dm6]	A	G	6.316e^-5	0.611	INTRON CG32091
3L	21398977	3L_21398977_SNP [dm3] 3L_21405877_SNP [dm6]	A	T	6.403e^-5	0.611	INTRON rgn & 1 other
2R	3871142	2R_3871142_SNP [dm3] 2R_7983637_SNP [dm6]	C	T	6.430e^-5	0.611	SYNONYMOUS_CODING ACC INTRON ACC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	12915718	X_12915718_SNP [dm3] X_13021685_SNP [dm6]	T	C	6.453e^-5	0.611	UPSTREAM CG2209 INTRON rad
2L	19680788	2L_19680788_SNP [dm3] 2L_19680788_SNP [dm6]	G	A	6.481e^-5	0.611	INTRON Lar	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	24820127	3R_24820127_SNP [dm3] 3R_28994405_SNP [dm6]	C	A	6.557e^-5	0.611	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19054723	2R_19054723_SNP [dm3] 2R_23167200_SNP [dm6]	C	T	6.592e^-5	0.611	INTRON CG34371	TF binding site mE1_TFBS_chinmo
X	6264571	X_6264571_SNP [dm3] X_6370538_SNP [dm6]	T	A	6.627e^-5	0.611	UTR_3_PRIME Marf DOWNSTREAM CR44816 & 1 other
3L	13379150	3L_13379150_SNP [dm3] 3L_13386050_SNP [dm6]	A	C	6.647e^-5	0.611	UTR_3_PRIME CG10171 DOWNSTREAM CG10171 & 1 other
3L	3497257	3L_3497257_SNP [dm3] 3L_3497257_SNP [dm6]	G	T	6.664e^-5	0.611	INTRON CG42324
X	576737	X_576737_SNP [dm3] X_682704_SNP [dm6]	T	C	6.677e^-5	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	19714402	2L_19714402_SNP [dm3] 2L_19714402_SNP [dm6]	G	T	6.693e^-5	0.611	INTRON Lar
3L	21892128	3L_21892128_SNP [dm3] 3L_21899028_SNP [dm6]	A	C	6.787e^-5	0.611	INTRON mub
3L	21892129	3L_21892129_SNP [dm3] 3L_21899029_SNP [dm6]	C	G	6.787e^-5	0.611	INTRON mub
X	8129130	X_8129130_SNP [dm3] X_8235097_SNP [dm6]	A	G	6.815e^-5	0.611	INTRON sdt	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	8454549	2R_8454549_INS [dm3] 2R_12567044_INS [dm6]	A	AA	6.897e^-5	0.611	INTRON Cyp301a1
3R	11627420	3R_11627420_SNP [dm3] 3R_15801698_SNP [dm6]	C	G	6.902e^-5	0.611	UTR_3_PRIME nsl1 UPSTREAM CG9593 DOWNSTREAM nsl1	TF binding site BDTNP1_TFBS_twi
3L	22223457	3L_22223457_SNP [dm3] 3L_22230357_SNP [dm6]	G	A	6.922e^-5	0.611	INTRON olf413	TF binding site mE1_TFBS_cad
X	6884107	X_6884107_SNP [dm3] X_6990074_SNP [dm6]	T	G	6.946e^-5	0.611	INTRON ogre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Trl
2R	5355355	2R_5355355_SNP [dm3] 2R_9467850_SNP [dm6]	A	G	6.962e^-5	0.611	INTRON Camta
3R	24826936	3R_24826936_SNP [dm3] 3R_29001214_SNP [dm6]	C	A	7.025e^-5	0.611	INTRON wat
2L	19754381	2L_19754381_SNP [dm3] 2L_19754381_SNP [dm6]	T	G	7.267e^-5	0.611	INTRON CG10631	TF binding site BDTNP1_TFBS_dl
3L	14152707	3L_14152707_SNP [dm3] 3L_14159607_SNP [dm6]	C	T	7.284e^-5	0.611	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	11446857	2L_11446857_SNP [dm3] 2L_11446857_SNP [dm6]	A	C	7.311e^-5	0.611	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3R	24823343	3R_24823343_INS [dm3] 3R_28997621_INS [dm6]	G	GGT	7.353e^-5	0.611	INTRON wat
2L	2273355	2L_2273355_SNP [dm3] 2L_2273355_SNP [dm6]	C	T	7.358e^-5	0.611	INTRON CR43753
X	19496032	X_19496032_SNP [dm3] X_19601999_SNP [dm6]	T	C	7.409e^-5	0.611	UPSTREAM CG14220 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	11594068	3R_11594068_SNP [dm3] 3R_15768346_SNP [dm6]	A	G	7.417e^-5	0.611	UPSTREAM CG5623 INTERGENIC
3L	11828447	3L_11828447_SNP [dm3] 3L_11835347_SNP [dm6]	A	G	7.432e^-5	0.611	NON_SYNONYMOUS_CODING CG43064	TF binding site BDTNP1_TFBS_da
3L	11828467	3L_11828467_SNP [dm3] 3L_11835367_SNP [dm6]	T	C	7.432e^-5	0.611	SYNONYMOUS_CODING CG43064	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11828470	3L_11828470_SNP [dm3] 3L_11835370_SNP [dm6]	G	A	7.432e^-5	0.611	SYNONYMOUS_CODING CG43064	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12816719	2L_12816719_SNP [dm3] 2L_12816719_SNP [dm6]	G	T	7.450e^-5	0.611	DOWNSTREAM kek1 INTERGENIC
3L	2107771	3L_2107771_INS [dm3] 3L_2107771_INS [dm6]	A	ACAA	7.493e^-5	0.611	INTRON sls	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	1982781	3R_1982781_INS [dm3] 3R_6157059_INS [dm6]	C	CGATGATC	7.498e^-5	0.611	UTR_5_PRIME CG31559	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	10886207	3L_10886207_SNP [dm3] 3L_10893107_SNP [dm6]	C	G	7.512e^-5	0.611	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
3R	22775917	3R_22775917_INS [dm3] 3R_26950195_INS [dm6]	T	TAT	7.526e^-5	0.611	UTR_3_PRIME CG6330 DOWNSTREAM CG18472
2L	19702793	2L_19702793_SNP [dm3] 2L_19702793_SNP [dm6]	A	G	7.548e^-5	0.611	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	19761542	2L_19761542_SNP [dm3] 2L_19761542_SNP [dm6]	T	G	7.561e^-5	0.611	DOWNSTREAM fbp & 1 other INTERGENIC
2L	4423784	2L_4423784_SNP [dm3] 2L_4423784_SNP [dm6]	C	T	7.563e^-5	0.611	INTRON CG15431	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19238931	X_19238931_SNP [dm3] X_19344898_SNP [dm6]	G	C	7.609e^-5	0.611	SPLICE_SITE_REGION nAChRalpha7 INTRON nAChRalpha7
2L	13740641	2L_13740641_SNP [dm3] 2L_13740641_SNP [dm6]	G	A	7.623e^-5	0.611	INTERGENIC
2L	11446864	2L_11446864_SNP [dm3] 2L_11446864_SNP [dm6]	A	G	7.624e^-5	0.611	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	11164527	2L_11164527_SNP [dm3] 2L_11164527_SNP [dm6]	A	G	7.658e^-5	0.611	INTRON Ca-beta
2L	10692050	2L_10692050_SNP [dm3] 2L_10692050_SNP [dm6]	G	A	7.924e^-5	0.615	DOWNSTREAM CG17108 INTERGENIC
2R	2655938	2R_2655938_SNP [dm3] 2R_6768433_SNP [dm6]	G	A	7.953e^-5	0.615	SYNONYMOUS_CODING Epac	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6859090	3L_6859090_SNP [dm3] 3L_6865990_SNP [dm6]	A	C	7.984e^-5	0.615	INTRON CR45115 EXON CR45115	TF binding site mE1_TFBS_sens
3R	2050654	3R_2050654_SNP [dm3] 3R_6224932_SNP [dm6]	A	T	8.020e^-5	0.615	INTERGENIC
3R	9837471	3R_9837471_SNP [dm3] 3R_14011749_SNP [dm6]	A	T	8.022e^-5	0.615	INTRON rdx	TF binding site BDTNP1_TFBS_dl
2L	14346993	2L_14346993_SNP [dm3] 2L_14346993_SNP [dm6]	T	C	8.060e^-5	0.615	UPSTREAM Send2 DOWNSTREAM mTTF INTERGENIC
2L	14432008	2L_14432008_SNP [dm3] 2L_14432008_SNP [dm6]	T	C	8.080e^-5	0.615	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	8004871	3R_8004871_SNP [dm3] 3R_12179149_SNP [dm6]	A	G	8.094e^-5	0.615	INTERGENIC
2R	19505830	2R_19505830_SNP [dm3] 2R_23618307_SNP [dm6]	G	T	8.116e^-5	0.615	INTERGENIC
3L	21343769	3L_21343769_SNP [dm3] 3L_21350669_SNP [dm6]	A	G	8.122e^-5	0.615	SYNONYMOUS_CODING CG32436
2R	19854351	2R_19854351_SNP [dm3] 2R_23966828_SNP [dm6]	G	A	8.148e^-5	0.615	DOWNSTREAM CG34213 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17623080	2R_17623080_SNP [dm3] 2R_21735575_SNP [dm6]	C	G	8.158e^-5	0.615	INTERGENIC
3R	25599780	3R_25599780_SNP [dm3] 3R_29774058_SNP [dm6]	T	C	8.175e^-5	0.615	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	13488567	X_13488567_SNP [dm3] X_13594534_SNP [dm6]	T	A	8.227e^-5	0.615	INTRON up
2L	13696457	2L_13696457_SNP [dm3] 2L_13696457_SNP [dm6]	T	A	8.250e^-5	0.615	INTRON CG31814
2L	9568176	2L_9568176_SNP [dm3] 2L_9568176_SNP [dm6]	C	T	8.252e^-5	0.615	UPSTREAM CG3838 EXON CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	8757850	3L_8757850_SNP [dm3] 3L_8764750_SNP [dm6]	T	A	8.272e^-5	0.615	INTRON Fhos
3R	24923132	3R_24923132_SNP [dm3] 3R_29097410_SNP [dm6]	G	A	8.294e^-5	0.615	DOWNSTREAM CR45030 INTRON CG11873
3R	24834136	3R_24834136_SNP [dm3] 3R_29008414_SNP [dm6]	T	C	8.399e^-5	0.62	DOWNSTREAM mir-4947 INTRON wat
2L	11324734	2L_11324734_SNP [dm3] 2L_11324734_SNP [dm6]	G	A	8.453e^-5	0.62	INTERGENIC
3R	1861544	3R_1861544_SNP [dm3] 3R_6035822_SNP [dm6]	T	G	8.458e^-5	0.62	INTERGENIC
2L	10509306	2L_10509306_SNP [dm3] 2L_10509306_SNP [dm6]	C	T	8.524e^-5	0.62	INTRON CG7384	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12085574	3L_12085574_SNP [dm3] 3L_12092474_SNP [dm6]	C	T	8.525e^-5	0.62	INTERGENIC
X	18881790	X_18881790_DEL [dm3] X_18987757_DEL [dm6]	GG	G	8.571e^-5	0.621	INTRON CG43759
2L	6770896	2L_6770896_SNP [dm3] 2L_6770896_SNP [dm6]	A	G	8.640e^-5	0.621	UTR_5_PRIME CG11321 INTRON CG11321
3R	5551583	3R_5551583_SNP [dm3] 3R_9725861_SNP [dm6]	C	A	8.642e^-5	0.621	UPSTREAM hyd DOWNSTREAM FoxP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	10595201	X_10595201_SNP [dm3] X_10701168_SNP [dm6]	A	C	8.749e^-5	0.622	INTRON X11Lbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
X	2498965	X_2498965_SNP [dm3] X_2604932_SNP [dm6]	C	T	8.773e^-5	0.622	SYNONYMOUS_CODING Zw10 UPSTREAM Klp3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
3R	11631398	3R_11631398_SNP [dm3] 3R_15805676_SNP [dm6]	A	G	8.801e^-5	0.622	INTRON alpha-Man-IIb
X	18869751	X_18869751_SNP [dm3] X_18975718_SNP [dm6]	A	G	8.812e^-5	0.622	INTRON CG43759	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13342981	2L_13342981_SNP [dm3] 2L_13342981_SNP [dm6]	C	T	8.840e^-5	0.622	INTERGENIC
3R	1944448	3R_1944448_SNP [dm3] 3R_6118726_SNP [dm6]	T	C	8.931e^-5	0.622	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	21891919	3L_21891919_SNP [dm3] 3L_21898819_SNP [dm6]	G	C	8.972e^-5	0.622	INTRON mub
2R	19499601	2R_19499601_SNP [dm3] 2R_23612078_SNP [dm6]	T	C	9.040e^-5	0.622	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4567883	2L_4567883_SNP [dm3] 2L_4567883_SNP [dm6]	C	G	9.082e^-5	0.622	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23514266	3R_23514266_SNP [dm3] 3R_27688544_SNP [dm6]	A	G	9.104e^-5	0.622	UPSTREAM CG31055 INTRON CG12880	TF binding site mE1_TFBS_chinmo
2L	19758987	2L_19758987_SNP [dm3] 2L_19758987_SNP [dm6]	C	A	9.147e^-5	0.622	UPSTREAM CG10628 INTRON CG10463	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
2L	19759013	2L_19759013_SNP [dm3] 2L_19759013_SNP [dm6]	C	A	9.147e^-5	0.622	NON_SYNONYMOUS_CODING CG10463 UPSTREAM CG10628	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
X	7454792	X_7454792_SNP [dm3] X_7560759_SNP [dm6]	A	T	9.198e^-5	0.622	INTERGENIC
3R	5539198	3R_5539198_SNP [dm3] 3R_9713476_SNP [dm6]	G	C	9.259e^-5	0.622	SYNONYMOUS_CODING dmt UPSTREAM scaRNA:PsiU1-6	TF binding site mE1_TFBS_sens
3L	2115979	3L_2115979_SNP [dm3] 3L_2115979_SNP [dm6]	C	T	9.332e^-5	0.622	UPSTREAM sls INTERGENIC	TF binding site mE1_TFBS_Trl
3R	24696920	3R_24696920_INS [dm3] 3R_28871198_INS [dm6]	A	ACTCA	9.341e^-5	0.622	UTR_3_PRIME CG33203 DOWNSTREAM spg
3R	5256664	3R_5256664_DEL [dm3] 3R_9430942_DEL [dm6]	GATGCAGATTTTG...	G	9.354e^-5	0.622	INTRON ps
2R	3050368	2R_3050368_DEL [dm3] 2R_7162863_DEL [dm6]	TTCGGAT	T	9.372e^-5	0.622	INTRON pk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19156906	X_19156906_SNP [dm3] X_19262873_SNP [dm6]	T	A	9.400e^-5	0.622	INTRON Vav	TF binding site BDTNP1_TFBS_dl
X	10599832	X_10599832_SNP [dm3] X_10705799_SNP [dm6]	T	C	9.455e^-5	0.622	SYNONYMOUS_CODING X11Lbeta	TF binding site mE1_TFBS_chinmo
2R	19621067	2R_19621067_DEL [dm3] 2R_23733544_DEL [dm6]	GCATCTTGC	G	9.510e^-5	0.622	UTR_3_PRIME Sesn DOWNSTREAM mir-4979 & 1 other	TF binding site mE1_TFBS_zfh1
3R	24818414	3R_24818414_SNP [dm3] 3R_28992692_SNP [dm6]	T	A	9.531e^-5	0.622	DOWNSTREAM wat INTERGENIC
3R	1082763	3R_1082763_SNP [dm3] 3R_5257041_SNP [dm6]	A	G	9.759e^-5	0.622	UTR_5_PRIME Hph UPSTREAM CG12173	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA
3L	4496915	3L_4496915_SNP [dm3] 3L_4496915_SNP [dm6]	A	C	9.820e^-5	0.622	UTR_3_PRIME CG13721	TF binding site mE1_TFBS_inv
X	12526759	X_12526759_SNP [dm3] X_12632726_SNP [dm6]	G	A	9.829e^-5	0.622	UPSTREAM Tomosyn INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
3L	10257494	3L_10257494_SNP [dm3] 3L_10264394_SNP [dm6]	T	G	1.002e^-4	0.622	NON_SYNONYMOUS_CODING can
X	5574223	X_5574223_SNP [dm3] X_5680190_SNP [dm6]	A	G	1.003e^-4	0.622	UPSTREAM Gr5a & 1 other DOWNSTREAM CR44958 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3R	18882772	3R_18882772_SNP [dm3] 3R_23057050_SNP [dm6]	A	G	1.006e^-4	0.622	INTRON CG17119	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19754422	2L_19754422_SNP [dm3] 2L_19754422_SNP [dm6]	C	T	1.007e^-4	0.622	INTRON CG10631	TF binding site BDTNP1_TFBS_dl
2R	19618239	2R_19618239_SNP [dm3] 2R_23730716_SNP [dm6]	T	A	1.014e^-4	0.622	INTRON Sesn
3L	6981861	3L_6981861_SNP [dm3] 3L_6988761_SNP [dm6]	C	A	1.014e^-4	0.622	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13282604	3L_13282604_SNP [dm3] 3L_13289504_SNP [dm6]	G	A	1.019e^-4	0.622	INTERGENIC
2L	6763750	2L_6763750_SNP [dm3] 2L_6763750_SNP [dm6]	C	T	1.019e^-4	0.622	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	3718102	3L_3718102_SNP [dm3] 3L_3718102_SNP [dm6]	T	C	1.022e^-4	0.622	INTRON CG32264
3L	18447139	3L_18447139_SNP [dm3] 3L_18454039_SNP [dm6]	A	T	1.023e^-4	0.622	INTERGENIC
2R	9534675	2R_9534675_INS [dm3] 2R_13647170_INS [dm6]	A	AA	1.023e^-4	0.622	INTRON fas
X	12527906	X_12527906_INS [dm3] X_12633873_INS [dm6]	A	AA	1.027e^-4	0.622	UTR_5_PRIME Tomosyn INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19773355	2L_19773355_SNP [dm3] 2L_19773355_SNP [dm6]	A	T	1.032e^-4	0.622	INTERGENIC
3L	9601740	3L_9601740_SNP [dm3] 3L_9608640_SNP [dm6]	T	C	1.034e^-4	0.622	NON_SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16409335	2R_16409335_SNP [dm3] 2R_20521830_SNP [dm6]	G	A	1.037e^-4	0.622	INTERGENIC
3L	14591111	3L_14591111_SNP [dm3] 3L_14598011_SNP [dm6]	C	T	1.040e^-4	0.622	NON_SYNONYMOUS_CODING HGTX	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad
2R	6393752	2R_6393752_SNP [dm3] 2R_10506247_SNP [dm6]	A	T	1.041e^-4	0.622	DOWNSTREAM lola INTRON lola	TF binding site mE1_TFBS_inv
X	18913334	X_18913334_SNP [dm3] X_19019301_SNP [dm6]	T	A	1.041e^-4	0.622	INTRON CG43759
2L	19240162	2L_19240162_SNP [dm3] 2L_19240162_SNP [dm6]	T	G	1.045e^-4	0.622	INTERGENIC
X	8176250	X_8176250_SNP [dm3] X_8282217_SNP [dm6]	T	C	1.049e^-4	0.622	UTR_3_PRIME nAChRalpha3 DOWNSTREAM nAChRalpha3
X	10601249	X_10601249_SNP [dm3] X_10707216_SNP [dm6]	G	A	1.054e^-4	0.622	INTRON X11Lbeta
X	1807057	X_1807057_SNP [dm3] X_1913024_SNP [dm6]	G	A	1.060e^-4	0.622	SYNONYMOUS_CODING Rbcn-3B INTRON mip130	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6009157	3R_6009157_SNP [dm3] 3R_10183435_SNP [dm6]	T	C	1.066e^-4	0.622	INTRON CG12814
X	16661280	X_16661280_SNP [dm3] X_16767247_SNP [dm6]	T	A	1.072e^-4	0.622	INTRON if
X	10601325	X_10601325_SNP [dm3] X_10707292_SNP [dm6]	A	T	1.072e^-4	0.622	INTRON X11Lbeta
2L	6764657	2L_6764657_SNP [dm3] 2L_6764657_SNP [dm6]	T	A	1.079e^-4	0.622	SYNONYMOUS_CODING CG11321
3L	10211818	3L_10211818_SNP [dm3] 3L_10218718_SNP [dm6]	C	T	1.084e^-4	0.622	NON_SYNONYMOUS_CODING CG32055
2L	19760403	2L_19760403_SNP [dm3] 2L_19760403_SNP [dm6]	C	T	1.084e^-4	0.622	SYNONYMOUS_CODING CG10463	TF binding site mE1_TFBS_cad
2R	19618226	2R_19618226_SNP [dm3] 2R_23730703_SNP [dm6]	G	T	1.085e^-4	0.622	INTRON Sesn
3R	12335293	3R_12335293_SNP [dm3] 3R_16509571_SNP [dm6]	A	G	1.086e^-4	0.622	INTRON CG42342	TF binding site BDTNP1_TFBS_twi
2R	10709789	2R_10709789_SNP [dm3] 2R_14822284_SNP [dm6]	C	G	1.091e^-4	0.622	INTERGENIC
2L	15207624	2L_15207624_SNP [dm3] 2L_15207624_SNP [dm6]	T	G	1.092e^-4	0.622	UPSTREAM CR44196 INTERGENIC
3L	13302038	3L_13302038_SNP [dm3] 3L_13308938_SNP [dm6]	T	C	1.093e^-4	0.622	INTERGENIC
2R	16677616	2R_16677616_SNP [dm3] 2R_20790111_SNP [dm6]	A	T	1.096e^-4	0.622	NON_SYNONYMOUS_CODING CG43667 UPSTREAM CG43666 DOWNSTREAM CG43677
3R	1969722	3R_1969722_SNP [dm3] 3R_6144000_SNP [dm6]	T	C	1.096e^-4	0.622	INTERGENIC
2L	10692063	2L_10692063_SNP [dm3] 2L_10692063_SNP [dm6]	G	A	1.098e^-4	0.622	DOWNSTREAM CG17108 INTERGENIC
3R	6879881	3R_6879881_SNP [dm3] 3R_11054159_SNP [dm6]	G	C	1.099e^-4	0.622	INTERGENIC
2L	14821520	2L_14821520_SNP [dm3] 2L_14821520_SNP [dm6]	T	A	1.100e^-4	0.622	INTERGENIC
2R	4013780	2R_4013780_SNP [dm3] 2R_8126275_SNP [dm6]	A	G	1.110e^-4	0.622	SYNONYMOUS_CODING coil	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3R	1981059	3R_1981059_SNP [dm3] 3R_6155337_SNP [dm6]	G	A	1.112e^-4	0.622	INTRON CG31559
2L	19754693	2L_19754693_SNP [dm3] 2L_19754693_SNP [dm6]	A	G	1.114e^-4	0.622	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10539701	2L_10539701_SNP [dm3] 2L_10539701_SNP [dm6]	C	T	1.117e^-4	0.622	INTERGENIC
2L	14291118	2L_14291118_SNP [dm3] 2L_14291118_SNP [dm6]	A	T	1.125e^-4	0.622	UPSTREAM CR43639 INTRON wb
3R	17343913	3R_17343913_SNP [dm3] 3R_21518191_SNP [dm6]	G	A	1.127e^-4	0.622	INTERGENIC
3L	9626431	3L_9626431_SNP [dm3] 3L_9633331_SNP [dm6]	G	A	1.128e^-4	0.622	SYNONYMOUS_CODING fry	TF binding site mE1_TFBS_cad
3R	21228318	3R_21228318_SNP [dm3] 3R_25402596_SNP [dm6]	G	A	1.130e^-4	0.622	INTRON Fur1
X	14782658	X_14782658_SNP [dm3] X_14888625_SNP [dm6]	A	T	1.131e^-4	0.622	INTRON Flo2 & 1 other
3L	8141922	3L_8141922_SNP [dm3] 3L_8148822_SNP [dm6]	C	A	1.136e^-4	0.622	INTRON CG13676
3R	22783213	3R_22783213_SNP [dm3] 3R_26957491_SNP [dm6]	T	C	1.141e^-4	0.622	INTRON CG6330
3R	22898178	3R_22898178_SNP [dm3] 3R_27072456_SNP [dm6]	C	G	1.146e^-4	0.622	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9511215	2R_9511215_SNP [dm3] 2R_13623710_SNP [dm6]	G	A	1.147e^-4	0.622	INTRON fas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	7293285	3R_7293285_SNP [dm3] 3R_11467563_SNP [dm6]	C	T	1.151e^-4	0.622	DOWNSTREAM CG17230 INTERGENIC
2L	19761534	2L_19761534_SNP [dm3] 2L_19761534_SNP [dm6]	T	C	1.155e^-4	0.622	DOWNSTREAM fbp & 1 other INTERGENIC
X	16660835	X_16660835_SNP [dm3] X_16766802_SNP [dm6]	T	G	1.155e^-4	0.622	INTRON if
2L	3872068	2L_3872068_SNP [dm3] 2L_3872068_SNP [dm6]	C	A	1.158e^-4	0.622	DOWNSTREAM Cep97 & 1 other INTRON CG31957	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
X	1562220	X_1562220_SNP [dm3] X_1668187_SNP [dm6]	G	A	1.161e^-4	0.622	SYNONYMOUS_CODING dor DOWNSTREAM CG3740 INTRON Mur2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14116230	3L_14116230_SNP [dm3] 3L_14123130_SNP [dm6]	A	G	1.171e^-4	0.622	INTRON Sox21b
2L	5638390	2L_5638390_SNP [dm3] 2L_5638390_SNP [dm6]	C	T	1.177e^-4	0.622	INTRON CG31646
2R	9216842	2R_9216842_SNP [dm3] 2R_13329337_SNP [dm6]	G	A	1.182e^-4	0.622	DOWNSTREAM CR44206 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8129127	X_8129127_SNP [dm3] X_8235094_SNP [dm6]	T	C	1.183e^-4	0.622	INTRON sdt	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	3651613	2R_3651613_SNP [dm3] 2R_7764108_SNP [dm6]	C	A	1.185e^-4	0.622	INTRON CG30497 & 1 other
2L	19715686	2L_19715686_SNP [dm3] 2L_19715686_SNP [dm6]	A	G	1.187e^-4	0.622	INTRON Lar
2L	19715734	2L_19715734_SNP [dm3] 2L_19715734_SNP [dm6]	C	A	1.187e^-4	0.622	INTRON Lar
2L	19715737	2L_19715737_SNP [dm3] 2L_19715737_SNP [dm6]	T	C	1.187e^-4	0.622	INTRON Lar
2L	19715743	2L_19715743_SNP [dm3] 2L_19715743_SNP [dm6]	T	C	1.187e^-4	0.622	INTRON Lar
3L	14152745	3L_14152745_SNP [dm3] 3L_14159645_SNP [dm6]	T	C	1.191e^-4	0.622	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	4403332	2L_4403332_SNP [dm3] 2L_4403332_SNP [dm6]	C	G	1.191e^-4	0.622	UTR_5_PRIME Dim1 DOWNSTREAM CG15431 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	5639893	3L_5639893_SNP [dm3] 3L_5646793_SNP [dm6]	A	C	1.193e^-4	0.622	SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	872810	3L_872810_SNP [dm3] 3L_872810_SNP [dm6]	C	A	1.195e^-4	0.622	UPSTREAM CG32479 INTRON CG32479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
2R	16040479	2R_16040479_SNP [dm3] 2R_20152974_SNP [dm6]	G	C	1.196e^-4	0.622	INTERGENIC
3L	14116291	3L_14116291_SNP [dm3] 3L_14123191_SNP [dm6]	C	A	1.202e^-4	0.622	INTRON Sox21b
2L	13343425	2L_13343425_SNP [dm3] 2L_13343425_SNP [dm6]	C	T	1.203e^-4	0.622	INTERGENIC
X	19238939	X_19238939_SNP [dm3] X_19344906_SNP [dm6]	T	G	1.204e^-4	0.622	SPLICE_SITE_REGION nAChRalpha7 UTR_5_PRIME nAChRalpha7 INTRON nAChRalpha7
2R	12632622	2R_12632622_SNP [dm3] 2R_16745117_SNP [dm6]	A	G	1.214e^-4	0.622	UPSTREAM Sfp53D DOWNSTREAM CG15617 INTERGENIC
3R	6863402	3R_6863402_SNP [dm3] 3R_11037680_SNP [dm6]	T	C	1.225e^-4	0.622	INTRON CG34114
3L	22196182	3L_22196182_SNP [dm3] 3L_22203082_SNP [dm6]	C	A	1.228e^-4	0.622	INTRON olf413	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
2L	15341502	2L_15341502_SNP [dm3] 2L_15341502_SNP [dm6]	G	A	1.234e^-4	0.622	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23732387	3R_23732387_SNP [dm3] 3R_27906665_SNP [dm6]	C	G	1.234e^-4	0.622	UPSTREAM CG34353 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	562216	3L_562216_INS [dm3] 3L_562216_INS [dm6]	A	AAA	1.236e^-4	0.622	INTRON hipk	TF binding site BDTNP1_TFBS_twi
3L	11828619	3L_11828619_SNP [dm3] 3L_11835519_SNP [dm6]	A	C	1.240e^-4	0.622	NON_SYNONYMOUS_CODING CG43064	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	19523756	2R_19523756_INS [dm3] 2R_23636233_INS [dm6]	T	TCC	1.242e^-4	0.622	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	17077152	3L_17077152_SNP [dm3] 3L_17084052_SNP [dm6]	G	A	1.243e^-4	0.622	INTRON Rbp6
3R	25848537	3R_25848537_SNP [dm3] 3R_30022815_SNP [dm6]	T	G	1.245e^-4	0.622	UPSTREAM Axn & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	19855008	2R_19855008_SNP [dm3] 2R_23967485_SNP [dm6]	T	A	1.245e^-4	0.622	UPSTREAM or DOWNSTREAM Alas INTRON CG34213	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8227366	2L_8227366_DEL [dm3] 2L_8227366_DEL [dm6]	TT	T	1.246e^-4	0.622	INTRON Pvr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22782762	3R_22782762_SNP [dm3] 3R_26957040_SNP [dm6]	G	A	1.248e^-4	0.622	INTRON CG6330	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19754185	2L_19754185_SNP [dm3] 2L_19754185_SNP [dm6]	T	A	1.249e^-4	0.622	NON_SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad
2L	3282656	2L_3282656_SNP [dm3] 2L_3282656_SNP [dm6]	C	T	1.251e^-4	0.622	INTERGENIC
3R	8004822	3R_8004822_SNP [dm3] 3R_12179100_SNP [dm6]	T	A	1.252e^-4	0.622	INTERGENIC
2L	19754329	2L_19754329_MNP [dm3] 2L_19754329_MNP [dm6]	GTA	AGT	1.255e^-4	0.622	INTRON CG10631	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	15341487	2L_15341487_SNP [dm3] 2L_15341487_SNP [dm6]	T	C	1.257e^-4	0.622	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17460555	X_17460555_SNP [dm3] X_17566522_SNP [dm6]	A	T	1.262e^-4	0.622	DOWNSTREAM ppk23 INTERGENIC
2L	14432029	2L_14432029_INS [dm3] 2L_14432029_INS [dm6]	T	AC	1.262e^-4	0.622	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	6941816	2L_6941816_SNP [dm3] 2L_6941816_SNP [dm6]	T	C	1.264e^-4	0.622	INTRON CG18304	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	17967359	2L_17967359_SNP [dm3] 2L_17967359_SNP [dm6]	G	A	1.264e^-4	0.622	SYNONYMOUS_CODING btv INTRON CG5674	TF binding site mE1_TFBS_HSA
3L	14127257	3L_14127257_SNP [dm3] 3L_14134157_SNP [dm6]	A	C	1.268e^-4	0.623	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	1110650	3L_1110650_SNP [dm3] 3L_1110650_SNP [dm6]	T	C	1.272e^-4	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	19754719	2L_19754719_SNP [dm3] 2L_19754719_SNP [dm6]	T	C	1.276e^-4	0.623	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13608506	3R_13608506_SNP [dm3] 3R_17782784_SNP [dm6]	G	T	1.278e^-4	0.623	NON_SYNONYMOUS_CODING CG43102 UTR_5_PRIME CG43102	TF binding site mE1_TFBS_cad
2L	4568096	2L_4568096_SNP [dm3] 2L_4568096_SNP [dm6]	C	A	1.288e^-4	0.624	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15347375	2L_15347375_SNP [dm3] 2L_15347375_SNP [dm6]	A	T	1.290e^-4	0.624	INTERGENIC
X	13332290	X_13332290_SNP [dm3] X_13438257_SNP [dm6]	C	A	1.291e^-4	0.624	INTERGENIC
2R	8888411	2R_8888411_SNP [dm3] 2R_13000906_SNP [dm6]	C	T	1.297e^-4	0.624	INTRON Su_z_2	TF binding site mE1_TFBS_sens
2L	17919741	2L_17919741_SNP [dm3] 2L_17919741_SNP [dm6]	C	T	1.300e^-4	0.624	UPSTREAM CR43274 INTERGENIC
2L	18267710	2L_18267710_SNP [dm3] 2L_18267710_SNP [dm6]	G	A	1.301e^-4	0.624	INTRON CG42750
3R	23510377	3R_23510377_SNP [dm3] 3R_27684655_SNP [dm6]	A	G	1.310e^-4	0.625	DOWNSTREAM CG31055 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9212993	2R_9212993_SNP [dm3] 2R_13325488_SNP [dm6]	T	A	1.310e^-4	0.625	INTERGENIC
3R	10838880	3R_10838880_SNP [dm3] 3R_15013158_SNP [dm6]	C	T	1.313e^-4	0.625	INTERGENIC
2R	19618203	2R_19618203_SNP [dm3] 2R_23730680_SNP [dm6]	T	C	1.318e^-4	0.625	INTRON Sesn
X	6884037	X_6884037_SNP [dm3] X_6990004_SNP [dm6]	C	A	1.321e^-4	0.625	INTRON ogre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	12089515	2R_12089515_SNP [dm3] 2R_16202010_SNP [dm6]	C	T	1.332e^-4	0.625	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	9601691	3L_9601691_SNP [dm3] 3L_9608591_SNP [dm6]	G	A	1.332e^-4	0.625	SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	11631469	3R_11631469_SNP [dm3] 3R_15805747_SNP [dm6]	G	T	1.334e^-4	0.625	INTRON alpha-Man-IIb
X	16792967	X_16792967_SNP [dm3] X_16898934_SNP [dm6]	A	G	1.335e^-4	0.625	INTERGENIC
3R	13394914	3R_13394914_SNP [dm3] 3R_17569192_SNP [dm6]	A	G	1.338e^-4	0.625	DOWNSTREAM Hmx INTERGENIC
2L	19759152	2L_19759152_SNP [dm3] 2L_19759152_SNP [dm6]	G	A	1.339e^-4	0.625	SPLICE_SITE_REGION CG10463 SYNONYMOUS_CODING CG10463 UPSTREAM CG10628	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11594071	3R_11594071_SNP [dm3] 3R_15768349_SNP [dm6]	T	C	1.343e^-4	0.625	UPSTREAM CG5623 INTERGENIC
2R	19618222	2R_19618222_SNP [dm3] 2R_23730699_SNP [dm6]	T	G	1.348e^-4	0.626	INTRON Sesn
X	6444452	X_6444452_SNP [dm3] X_6550419_SNP [dm6]	C	T	1.361e^-4	0.627	INTRON CG34417	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	19242850	2R_19242850_SNP [dm3] 2R_23355327_SNP [dm6]	G	T	1.363e^-4	0.627	UTR_5_PRIME Rpi DOWNSTREAM CG30409	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14432033	2L_14432033_INS [dm3] 2L_14432033_INS [dm6]	C	CCTATTATTATTCCATAAAG...	1.365e^-4	0.627	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	3727184	2L_3727184_SNP [dm3] 2L_3727184_SNP [dm6]	T	A	1.366e^-4	0.627	UTR_3_PRIME Shaw
2R	4265145	2R_4265145_INS [dm3] 2R_8377640_INS [dm6]	C	CC	1.368e^-4	0.627	INTRON pdm3	TF binding site mE1_TFBS_inv
2L	21864336	2L_21864336_SNP [dm3] 2L_21864336_SNP [dm6]	G	T	1.372e^-4	0.627	DOWNSTREAM CR44918 INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19758786	2L_19758786_SNP [dm3] 2L_19758786_SNP [dm6]	C	T	1.374e^-4	0.627	UPSTREAM CG10463 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	1531280	3R_1531280_SNP [dm3] 3R_5705558_SNP [dm6]	G	A	1.388e^-4	0.632	INTRON plx	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23771559	3R_23771559_SNP [dm3] 3R_27945837_SNP [dm6]	G	T	1.391e^-4	0.632	INTRON mfrn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	9209279	2R_9209279_SNP [dm3] 2R_13321774_SNP [dm6]	G	A	1.396e^-4	0.632	INTERGENIC
2L	19740833	2L_19740833_SNP [dm3] 2L_19740833_SNP [dm6]	G	A	1.403e^-4	0.632	DOWNSTREAM CR44906 INTERGENIC	TF binding site mE1_TFBS_Trl
X	12536863	X_12536863_DEL [dm3] X_12642830_DEL [dm6]	AACCCCTATCCGATGTTTGT...	A	1.403e^-4	0.632	INTRON Tomosyn
2L	9197035	2L_9197035_SNP [dm3] 2L_9197035_SNP [dm6]	A	C	1.405e^-4	0.632	INTRON tai
X	16660857	X_16660857_SNP [dm3] X_16766824_SNP [dm6]	G	A	1.417e^-4	0.634	INTRON if
X	6884695	X_6884695_SNP [dm3] X_6990662_SNP [dm6]	G	A	1.417e^-4	0.634	DOWNSTREAM Inx7 INTRON ogre	TF binding site mE1_TFBS_HSA
2L	11937998	2L_11937998_SNP [dm3] 2L_11937998_SNP [dm6]	T	C	1.427e^-4	0.637	SYNONYMOUS_CODING Or33c DOWNSTREAM Or33b	TF binding site mE1_TFBS_cad
X	21376404	X_21376404_SNP [dm3] X_21505377_SNP [dm6]	C	A	1.433e^-4	0.638	INTRON CR45082
3R	25245281	3R_25245281_SNP [dm3] 3R_29419559_SNP [dm6]	T	A	1.441e^-4	0.64	INTRON Ptp99A
X	7425371	X_7425371_INS [dm3] X_7531338_INS [dm6]	A	AATCCCT	1.449e^-4	0.642	INTRON CG32719
2L	14432011	2L_14432011_SNP [dm3] 2L_14432011_SNP [dm6]	A	G	1.454e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	3079454	2L_3079454_SNP [dm3] 2L_3079454_SNP [dm6]	G	A	1.455e^-4	0.642	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	1601911	3R_1601911_SNP [dm3] 3R_5776189_SNP [dm6]	C	G	1.461e^-4	0.642	INTRON CG2082
X	5700819	X_5700819_SNP [dm3] X_5806786_SNP [dm6]	A	G	1.462e^-4	0.642	INTERGENIC
3L	13970793	3L_13970793_SNP [dm3] 3L_13977693_SNP [dm6]	G	C	1.474e^-4	0.645	UTR_3_PRIME Hsc70-1 DOWNSTREAM CG17364
3R	22897568	3R_22897568_SNP [dm3] 3R_27071846_SNP [dm6]	C	A	1.475e^-4	0.645	INTERGENIC
3L	872811	3L_872811_SNP [dm3] 3L_872811_SNP [dm6]	C	T	1.480e^-4	0.645	UPSTREAM CG32479 INTRON CG32479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
X	17460654	X_17460654_SNP [dm3] X_17566621_SNP [dm6]	C	T	1.486e^-4	0.645	UTR_3_PRIME ppk23 DOWNSTREAM ppk23
2L	19720669	2L_19720669_SNP [dm3] 2L_19720669_SNP [dm6]	T	G	1.489e^-4	0.645	INTRON Lar
X	13500783	X_13500783_SNP [dm3] X_13606750_SNP [dm6]	C	T	1.500e^-4	0.645	SYNONYMOUS_CODING CG11178	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19652019	2L_19652019_SNP [dm3] 2L_19652019_SNP [dm6]	A	G	1.505e^-4	0.645	INTRON Lar
3L	22200873	3L_22200873_SNP [dm3] 3L_22207773_SNP [dm6]	G	C	1.506e^-4	0.645	INTRON olf413
X	21253020	X_21253020_SNP [dm3] X_21381993_SNP [dm6]	T	A	1.508e^-4	0.645	UPSTREAM slgA INTRON slgA
3R	1863125	3R_1863125_SNP [dm3] 3R_6037403_SNP [dm6]	C	A	1.511e^-4	0.645	INTERGENIC
3R	17342625	3R_17342625_SNP [dm3] 3R_21516903_SNP [dm6]	C	T	1.511e^-4	0.645	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	10600846	X_10600846_SNP [dm3] X_10706813_SNP [dm6]	C	T	1.514e^-4	0.645	INTRON X11Lbeta
3L	5566983	3L_5566983_SNP [dm3] 3L_5573883_SNP [dm6]	C	A	1.515e^-4	0.645	INTRON Msr-110
3L	9601701	3L_9601701_SNP [dm3] 3L_9608601_SNP [dm6]	A	T	1.520e^-4	0.645	NON_SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	18913572	X_18913572_INS [dm3] X_19019539_INS [dm6]	A	AA	1.523e^-4	0.645	INTRON CG43759
3R	12832583	3R_12832583_SNP [dm3] 3R_17006861_SNP [dm6]	A	G	1.525e^-4	0.645	NON_SYNONYMOUS_CODING Irc
X	5095368	X_5095368_SNP [dm3] X_5201335_SNP [dm6]	C	A	1.531e^-4	0.645	INTRON rg & 1 other
2L	19754818	2L_19754818_SNP [dm3] 2L_19754818_SNP [dm6]	G	A	1.535e^-4	0.645	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8129125	X_8129125_SNP [dm3] X_8235092_SNP [dm6]	A	C	1.538e^-4	0.645	INTRON sdt	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	11630363	3R_11630363_SNP [dm3] 3R_15804641_SNP [dm6]	C	A	1.540e^-4	0.645	DOWNSTREAM CG9593 INTRON alpha-Man-IIb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	14099367	2R_14099367_SNP [dm3] 2R_18211862_SNP [dm6]	G	A	1.540e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_sens
2L	6192389	2L_6192389_SNP [dm3] 2L_6192389_SNP [dm6]	G	T	1.543e^-4	0.645	INTRON CG34380
X	7425374	X_7425374_SNP [dm3] X_7531341_SNP [dm6]	T	G	1.558e^-4	0.646	INTRON CG32719
2L	19714342	2L_19714342_SNP [dm3] 2L_19714342_SNP [dm6]	G	A	1.559e^-4	0.646	INTRON Lar
X	21376386	X_21376386_SNP [dm3] X_21505359_SNP [dm6]	C	T	1.560e^-4	0.646	INTRON CR45082
X	14068159	X_14068159_SNP [dm3] X_14174126_SNP [dm6]	C	T	1.562e^-4	0.646	UPSTREAM CG1368 INTERGENIC
2R	18004868	2R_18004868_SNP [dm3] 2R_22117363_SNP [dm6]	C	T	1.567e^-4	0.646	INTRON Vrp1
2L	19699386	2L_19699386_SNP [dm3] 2L_19699386_SNP [dm6]	T	G	1.574e^-4	0.646	UTR_3_PRIME scw DOWNSTREAM scw INTRON Lar	TF binding site BDTNP1_TFBS_da
3R	6326927	3R_6326927_SNP [dm3] 3R_10501205_SNP [dm6]	T	C	1.576e^-4	0.646	INTERGENIC
3R	3741053	3R_3741053_SNP [dm3] 3R_7915331_SNP [dm6]	T	C	1.597e^-4	0.646	UTR_3_PRIME CG2678 INTRON CG2678	TF binding site BDTNP1_TFBS_da
3L	7002410	3L_7002410_SNP [dm3] 3L_7009310_SNP [dm6]	C	T	1.599e^-4	0.646	INTRON Mp
X	7454784	X_7454784_DEL [dm3] X_7560751_DEL [dm6]	GAA	G	1.609e^-4	0.646	INTERGENIC
2R	14660302	2R_14660302_SNP [dm3] 2R_18772797_SNP [dm6]	C	T	1.609e^-4	0.646	SYNONYMOUS_CODING Mctp
3R	7286352	3R_7286352_SNP [dm3] 3R_11460630_SNP [dm6]	C	T	1.614e^-4	0.646	UPSTREAM PGRP-LB INTRON CG17230
3R	3741054	3R_3741054_SNP [dm3] 3R_7915332_SNP [dm6]	A	G	1.622e^-4	0.646	UTR_3_PRIME CG2678 INTRON CG2678	TF binding site BDTNP1_TFBS_da
3R	13767567	3R_13767567_SNP [dm3] 3R_17941845_SNP [dm6]	C	A	1.622e^-4	0.646	INTRON cpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12982589	2R_12982589_SNP [dm3] 2R_17095084_SNP [dm6]	G	T	1.623e^-4	0.646	INTRON GstS1	TF binding site mE1_TFBS_cad
3R	11465459	3R_11465459_SNP [dm3] 3R_15639737_SNP [dm6]	G	A	1.624e^-4	0.646	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	13697635	2L_13697635_SNP [dm3] 2L_13697635_SNP [dm6]	G	T	1.625e^-4	0.646	INTRON CG31814
2L	11446838	2L_11446838_SNP [dm3] 2L_11446838_SNP [dm6]	A	T	1.628e^-4	0.646	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	19958356	3R_19958356_SNP [dm3] 3R_24132634_SNP [dm6]	G	A	1.629e^-4	0.646	SYNONYMOUS_CODING Tsc1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23324466	3R_23324466_SNP [dm3] 3R_27498744_SNP [dm6]	T	A	1.632e^-4	0.646	INTERGENIC
2L	10814885	2L_10814885_SNP [dm3] 2L_10814885_SNP [dm6]	G	C	1.635e^-4	0.646	INTRON Nos
3R	1979651	3R_1979651_SNP [dm3] 3R_6153929_SNP [dm6]	C	T	1.638e^-4	0.646	INTRON CG31559
3L	8964822	3L_8964822_SNP [dm3] 3L_8971722_SNP [dm6]	G	T	1.638e^-4	0.646	UTR_3_PRIME CG5026 DOWNSTREAM pix & 1 other
2R	19146311	2R_19146311_SNP [dm3] 2R_23258788_SNP [dm6]	A	T	1.639e^-4	0.646	INTERGENIC
2L	3393560	2L_3393560_SNP [dm3] 2L_3393560_SNP [dm6]	T	C	1.647e^-4	0.646	INTERGENIC
X	8793959	X_8793959_SNP [dm3] X_8899926_SNP [dm6]	G	C	1.654e^-4	0.646	SYNONYMOUS_CODING CG1885	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	1941776	3R_1941776_SNP [dm3] 3R_6116054_SNP [dm6]	G	A	1.660e^-4	0.646	INTERGENIC
3R	20915348	3R_20915348_SNP [dm3] 3R_25089626_SNP [dm6]	A	G	1.665e^-4	0.646	INTERGENIC
3L	6973540	3L_6973540_SNP [dm3] 3L_6980440_SNP [dm6]	C	T	1.666e^-4	0.646	UPSTREAM Galphai INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19720667	2L_19720667_SNP [dm3] 2L_19720667_SNP [dm6]	C	T	1.669e^-4	0.646	INTRON Lar
3R	22776300	3R_22776300_SNP [dm3] 3R_26950578_SNP [dm6]	T	C	1.682e^-4	0.646	DOWNSTREAM CG18472 INTRON CG6330	TF binding site mE1_TFBS_cad
2L	11687907	2L_11687907_SNP [dm3] 2L_11687907_SNP [dm6]	T	A	1.684e^-4	0.646	INTERGENIC
2L	19761527	2L_19761527_SNP [dm3] 2L_19761527_SNP [dm6]	G	A	1.687e^-4	0.646	DOWNSTREAM fbp & 1 other INTERGENIC
2R	19613264	2R_19613264_INS [dm3] 2R_23725741_INS [dm6]	A	AGCTG	1.691e^-4	0.646	INTRON Sesn
2R	13055757	2R_13055757_SNP [dm3] 2R_17168252_SNP [dm6]	C	T	1.694e^-4	0.646	INTERGENIC
2L	15195139	2L_15195139_SNP [dm3] 2L_15195139_SNP [dm6]	T	C	1.708e^-4	0.646	INTRON CG4168
2L	14254226	2L_14254226_SNP [dm3] 2L_14254226_SNP [dm6]	G	A	1.710e^-4	0.646	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	15056898	3R_15056898_SNP [dm3] 3R_19231176_SNP [dm6]	C	T	1.714e^-4	0.646	SYNONYMOUS_CODING unc79 DOWNSTREAM CG3773	TF binding site mE1_TFBS_chinmo
2R	10709756	2R_10709756_SNP [dm3] 2R_14822251_SNP [dm6]	T	A	1.714e^-4	0.646	INTERGENIC
2L	16165385	2L_16165385_SNP [dm3] 2L_16165385_SNP [dm6]	T	C	1.718e^-4	0.646	UPSTREAM Ca-alpha1D INTERGENIC
X	10601307	X_10601307_DEL [dm3] X_10707274_DEL [dm6]	TT	T	1.718e^-4	0.646	INTRON X11Lbeta
3L	3718103	3L_3718103_SNP [dm3] 3L_3718103_SNP [dm6]	A	T	1.719e^-4	0.646	INTRON CG32264
3L	3718111	3L_3718111_SNP [dm3] 3L_3718111_SNP [dm6]	C	T	1.719e^-4	0.646	INTRON CG32264
2R	2092483	2R_2092483_SNP [dm3] 2R_6204978_SNP [dm6]	T	G	1.719e^-4	0.646	UTR_3_PRIME CG30431	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	14236781	3L_14236781_INS [dm3] 3L_14243681_INS [dm6]	A	ATTTTAA	1.720e^-4	0.646	INTERGENIC
2R	7105953	2R_7105953_SNP [dm3] 2R_11218448_SNP [dm6]	C	T	1.720e^-4	0.646	INTRON CG9084	TF binding site BDTNP1_TFBS_dl
2L	19742240	2L_19742240_SNP [dm3] 2L_19742240_SNP [dm6]	A	C	1.724e^-4	0.646	DOWNSTREAM CG10631 EXON CR44906	TF binding site mE1_TFBS_sens
X	14711212	X_14711212_SNP [dm3] X_14817179_SNP [dm6]	G	T	1.730e^-4	0.646	INTRON rut
3R	21471547	3R_21471547_SNP [dm3] 3R_25645825_SNP [dm6]	T	A	1.735e^-4	0.646	UPSTREAM mir-92a INTRON jigr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25361127	3R_25361127_SNP [dm3] 3R_29535405_SNP [dm6]	C	A	1.746e^-4	0.646	DOWNSTREAM CR43613 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	17252574	2L_17252574_SNP [dm3] 2L_17252574_SNP [dm6]	T	A	1.752e^-4	0.646	INTRON beat-IIIc
3L	18195568	3L_18195568_SNP [dm3] 3L_18202468_SNP [dm6]	T	A	1.756e^-4	0.646	SYNONYMOUS_CODING CG7320	TF binding site mE1_TFBS_inv
2L	14328660	2L_14328660_SNP [dm3] 2L_14328660_SNP [dm6]	T	C	1.757e^-4	0.646	SYNONYMOUS_CODING ms_2_34Fe DOWNSTREAM wb
3R	18357350	3R_18357350_SNP [dm3] 3R_22531628_SNP [dm6]	C	T	1.759e^-4	0.646	NON_SYNONYMOUS_CODING CG33093 DOWNSTREAM CG5326	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18471058	3L_18471058_SNP [dm3] 3L_18477958_SNP [dm6]	G	C	1.763e^-4	0.646	UPSTREAM CR44673 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	11336673	2L_11336673_SNP [dm3] 2L_11336673_SNP [dm6]	A	C	1.766e^-4	0.646	INTERGENIC
3R	1981300	3R_1981300_SNP [dm3] 3R_6155578_SNP [dm6]	C	A	1.767e^-4	0.646	INTRON CG31559
3R	1969721	3R_1969721_SNP [dm3] 3R_6143999_SNP [dm6]	T	G	1.772e^-4	0.646	INTERGENIC
2R	12254748	2R_12254748_SNP [dm3] 2R_16367243_SNP [dm6]	G	A	1.773e^-4	0.646	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10595219	X_10595219_SNP [dm3] X_10701186_SNP [dm6]	C	T	1.774e^-4	0.646	INTRON X11Lbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	19498111	2R_19498111_DEL [dm3] 2R_23610588_DEL [dm6]	ACA	A	1.775e^-4	0.646	INTRON CG17664 & 1 other
3L	12719074	3L_12719074_SNP [dm3] 3L_12725974_SNP [dm6]	T	A	1.775e^-4	0.646	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21913369	3L_21913369_SNP [dm3] 3L_21920269_SNP [dm6]	G	T	1.779e^-4	0.646	INTRON mub
2L	19760859	2L_19760859_SNP [dm3] 2L_19760859_SNP [dm6]	T	C	1.779e^-4	0.646	SYNONYMOUS_CODING CG10463 DOWNSTREAM fbp	TF binding site mE1_TFBS_cad
2R	19618233	2R_19618233_INS [dm3] 2R_23730710_INS [dm6]	A	AT	1.780e^-4	0.646	INTRON Sesn
2L	17780063	2L_17780063_SNP [dm3] 2L_17780063_SNP [dm6]	G	A	1.784e^-4	0.646	INTERGENIC
3L	5813049	3L_5813049_SNP [dm3] 3L_5819949_SNP [dm6]	A	G	1.786e^-4	0.646	INTRON vn
3L	21870109	3L_21870109_SNP [dm3] 3L_21877009_SNP [dm6]	T	C	1.788e^-4	0.646	INTRON mub
X	4434808	X_4434808_SNP [dm3] X_4540775_SNP [dm6]	C	T	1.790e^-4	0.646	UPSTREAM CHOp24 & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	20855873	3R_20855873_SNP [dm3] 3R_25030151_SNP [dm6]	A	G	1.796e^-4	0.646	DOWNSTREAM Hr96 INTRON Smg6	TF binding site BDTNP1_TFBS_twi
2L	19651088	2L_19651088_DEL [dm3] 2L_19651088_DEL [dm6]	TTTTA	T	1.799e^-4	0.646	INTRON Lar
3L	7786526	3L_7786526_SNP [dm3] 3L_7793426_SNP [dm6]	A	T	1.802e^-4	0.646	INTRON CG32369
2L	17968799	2L_17968799_SNP [dm3] 2L_17968799_SNP [dm6]	A	G	1.804e^-4	0.646	SYNONYMOUS_CODING btv INTRON CG5674	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19698593	2L_19698593_SNP [dm3] 2L_19698593_SNP [dm6]	G	C	1.804e^-4	0.646	DOWNSTREAM scw INTRON Lar
2R	19146411	2R_19146411_SNP [dm3] 2R_23258888_SNP [dm6]	T	C	1.805e^-4	0.646	INTERGENIC
2L	11496598	2L_11496598_SNP [dm3] 2L_11496598_SNP [dm6]	G	C	1.818e^-4	0.647	DOWNSTREAM CG6488 INTERGENIC
2R	13831592	2R_13831592_SNP [dm3] 2R_17944087_SNP [dm6]	A	G	1.827e^-4	0.647	INTERGENIC
2L	11128330	2L_11128330_SNP [dm3] 2L_11128330_SNP [dm6]	T	A	1.830e^-4	0.647	SPLICE_SITE_REGION Nup160 DOWNSTREAM RfC38 INTRON Nup160	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14141809	2R_14141809_SNP [dm3] 2R_18254304_SNP [dm6]	A	G	1.835e^-4	0.647	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19696347	2L_19696347_SNP [dm3] 2L_19696347_SNP [dm6]	C	A	1.836e^-4	0.647	INTRON Lar
2R	12189088	2R_12189088_SNP [dm3] 2R_16301583_SNP [dm6]	C	A	1.836e^-4	0.647	EXON CR45232	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9601931	3L_9601931_SNP [dm3] 3L_9608831_SNP [dm6]	C	A	1.838e^-4	0.647	SYNONYMOUS_CODING CG3280
3R	23514496	3R_23514496_SNP [dm3] 3R_27688774_SNP [dm6]	A	G	1.839e^-4	0.647	UPSTREAM CG31055 INTRON CG12880	TF binding site mE1_TFBS_chinmo
X	7960236	X_7960236_SNP [dm3] X_8066203_SNP [dm6]	T	C	1.850e^-4	0.647	INTRON mys
3R	11465501	3R_11465501_SNP [dm3] 3R_15639779_SNP [dm6]	C	A	1.850e^-4	0.647	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	5328158	3L_5328158_SNP [dm3] 3L_5335058_SNP [dm6]	C	T	1.854e^-4	0.647	EXON CR45742
3R	11628954	3R_11628954_SNP [dm3] 3R_15803232_SNP [dm6]	C	T	1.860e^-4	0.647	NON_SYNONYMOUS_CODING CG9593	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	11224756	2L_11224756_SNP [dm3] 2L_11224756_SNP [dm6]	A	C	1.860e^-4	0.647	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
X	16660829	X_16660829_SNP [dm3] X_16766796_SNP [dm6]	T	C	1.863e^-4	0.647	INTRON if
2L	19746570	2L_19746570_SNP [dm3] 2L_19746570_SNP [dm6]	A	T	1.866e^-4	0.647	NON_SYNONYMOUS_CODING CG10631
3L	1729572	3L_1729572_SNP [dm3] 3L_1729572_SNP [dm6]	T	A	1.868e^-4	0.647	INTRON drpr	TF binding site BDTNP1_TFBS_z
3L	11353957	3L_11353957_SNP [dm3] 3L_11360857_SNP [dm6]	C	A	1.868e^-4	0.647	INTERGENIC
X	1804188	X_1804188_SNP [dm3] X_1910155_SNP [dm6]	T	G	1.875e^-4	0.647	INTRON mip130 & 1 other	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	18981817	2R_18981817_SNP [dm3] 2R_23094294_SNP [dm6]	T	C	1.876e^-4	0.647	UPSTREAM CG9876 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	20854742	3L_20854742_SNP [dm3] 3L_20861642_SNP [dm6]	C	G	1.878e^-4	0.647	INTRON CG32432
2R	19281434	2R_19281434_INS [dm3] 2R_23393911_INS [dm6]	C	CTTTTCCCGTTT...	1.879e^-4	0.647	INTRON CG3530	TF binding site mE1_TFBS_chinmo
3L	12083957	3L_12083957_SNP [dm3] 3L_12090857_SNP [dm6]	T	C	1.883e^-4	0.647	INTERGENIC
X	12527085	X_12527085_SNP [dm3] X_12633052_SNP [dm6]	C	G	1.896e^-4	0.647	UPSTREAM Tomosyn INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl
2L	11450177	2L_11450177_DEL [dm3] 2L_11450177_DEL [dm6]	TATCCCTCACATATTATCAC...	T	1.896e^-4	0.647	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	24839518	3R_24839518_SNP [dm3] 3R_29013796_SNP [dm6]	G	C	1.898e^-4	0.647	INTRON wat
2R	13549636	2R_13549636_SNP [dm3] 2R_17662131_SNP [dm6]	C	A	1.901e^-4	0.647	INTRON CCHa1-R
3L	2543763	3L_2543763_SNP [dm3] 3L_2543763_SNP [dm6]	G	A	1.914e^-4	0.647	INTRON Spn
3L	8972380	3L_8972380_SNP [dm3] 3L_8979280_SNP [dm6]	A	G	1.915e^-4	0.647	INTRON CG5644	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_Trl
2L	10012328	2L_10012328_SNP [dm3] 2L_10012328_SNP [dm6]	G	T	1.918e^-4	0.647	DOWNSTREAM Trp1 & 1 other INTRON Trp1
2L	3574775	2L_3574775_SNP [dm3] 2L_3574775_SNP [dm6]	T	C	1.920e^-4	0.647	UPSTREAM CR43822 INTERGENIC	TF binding site mE1_TFBS_cad
2L	14063156	2L_14063156_INS [dm3] 2L_14063156_INS [dm6]	G	GG	1.920e^-4	0.647	INTRON nAChRalpha5
3L	8969256	3L_8969256_SNP [dm3] 3L_8976156_SNP [dm6]	T	C	1.921e^-4	0.647	SYNONYMOUS_CODING Srp68	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14780722	2L_14780722_SNP [dm3] 2L_14780722_SNP [dm6]	C	A	1.922e^-4	0.647	DOWNSTREAM CR15280 INTERGENIC
X	7747612	X_7747612_SNP [dm3] X_7853579_SNP [dm6]	G	A	1.938e^-4	0.651	SYNONYMOUS_CODING CG10920	TF binding site mE1_TFBS_chinmo
3R	25686783	3R_25686783_SNP [dm3] 3R_29861061_SNP [dm6]	G	A	1.940e^-4	0.651	SYNONYMOUS_CODING CG15514 UPSTREAM RpS8	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	11363077	X_11363077_SNP [dm3] X_11469044_SNP [dm6]	G	A	1.944e^-4	0.651	INTRON CG43155
3R	20855872	3R_20855872_SNP [dm3] 3R_25030150_SNP [dm6]	C	A	1.948e^-4	0.651	DOWNSTREAM Hr96 INTRON Smg6	TF binding site BDTNP1_TFBS_twi
X	19037848	X_19037848_SNP [dm3] X_19143815_SNP [dm6]	T	C	1.955e^-4	0.651	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_sna
3R	24820639	3R_24820639_SNP [dm3] 3R_28994917_SNP [dm6]	T	C	1.956e^-4	0.651	INTRON wat	TF binding site mE1_TFBS_HSA
3R	23771772	3R_23771772_SNP [dm3] 3R_27946050_SNP [dm6]	G	A	1.959e^-4	0.651	INTRON mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	19618236	2R_19618236_SNP [dm3] 2R_23730713_SNP [dm6]	G	T	1.960e^-4	0.651	INTRON Sesn
3R	25623255	3R_25623255_SNP [dm3] 3R_29797533_SNP [dm6]	T	A	1.974e^-4	0.654	INTRON CG7837	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9626308	3L_9626308_SNP [dm3] 3L_9633208_SNP [dm6]	A	G	1.977e^-4	0.654	SYNONYMOUS_CODING fry	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11336095	2L_11336095_SNP [dm3] 2L_11336095_SNP [dm6]	T	A	1.987e^-4	0.655	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	2115962	3L_2115962_SNP [dm3] 3L_2115962_SNP [dm6]	G	A	1.993e^-4	0.655	UPSTREAM sls INTERGENIC	TF binding site mE1_TFBS_Trl
X	4593570	X_4593570_SNP [dm3] X_4699537_SNP [dm6]	C	T	1.997e^-4	0.655	UTR_3_PRIME ctp DOWNSTREAM ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6884262	X_6884262_DEL [dm3] X_6990229_DEL [dm6]	AC	A	1.999e^-4	0.655	INTRON ogre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
3L	9605172	3L_9605172_SNP [dm3] 3L_9612072_SNP [dm6]	G	A	2.001e^-4	0.655	SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_chinmo
3L	13379164	3L_13379164_SNP [dm3] 3L_13386064_SNP [dm6]	C	G	2.002e^-4	0.655	UTR_3_PRIME CG10171 DOWNSTREAM CG10171 & 1 other
3L	21069367	3L_21069367_SNP [dm3] 3L_21076267_SNP [dm6]	G	A	2.007e^-4	0.655	NON_SYNONYMOUS_CODING ko DOWNSTREAM siz	TF binding site mE1_TFBS_cad
3R	13394909	3R_13394909_SNP [dm3] 3R_17569187_SNP [dm6]	A	T	2.009e^-4	0.655	DOWNSTREAM Hmx INTERGENIC
2L	15276487	2L_15276487_SNP [dm3] 2L_15276487_SNP [dm6]	C	T	2.016e^-4	0.656	INTERGENIC
X	4434810	X_4434810_SNP [dm3] X_4540777_SNP [dm6]	T	C	2.017e^-4	0.656	UPSTREAM CHOp24 & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	12335259	3R_12335259_SNP [dm3] 3R_16509537_SNP [dm6]	G	T	2.025e^-4	0.656	INTRON CG42342	TF binding site BDTNP1_TFBS_twi
3R	25855650	3R_25855650_SNP [dm3] 3R_30029928_SNP [dm6]	A	C	2.034e^-4	0.656	INTRON Axn	TF binding site BDTNP1_TFBS_dl
3L	10826517	3L_10826517_SNP [dm3] 3L_10833417_SNP [dm6]	A	C	2.038e^-4	0.656	INTERGENIC
3L	18471084	3L_18471084_SNP [dm3] 3L_18477984_SNP [dm6]	G	C	2.046e^-4	0.656	UPSTREAM CR44673 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	7505358	2R_7505358_SNP [dm3] 2R_11617853_SNP [dm6]	A	G	2.047e^-4	0.656	INTRON Egm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	872814	3L_872814_DEL [dm3] 3L_872814_DEL [dm6]	TGTAAGCCTTAT...	T	2.048e^-4	0.656	UPSTREAM CG32479 INTRON CG32479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
2L	19766216	2L_19766216_SNP [dm3] 2L_19766216_SNP [dm6]	C	T	2.051e^-4	0.656	UTR_3_PRIME bsh DOWNSTREAM bsh
2L	9708138	2L_9708138_SNP [dm3] 2L_9708138_SNP [dm6]	T	C	2.055e^-4	0.656	DOWNSTREAM CG4364 INTRON pelo	TF binding site mE1_TFBS_HSA
3R	1914858	3R_1914858_SNP [dm3] 3R_6089136_SNP [dm6]	T	G	2.055e^-4	0.656	UTR_3_PRIME Gasp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1750991	3L_1750991_SNP [dm3] 3L_1750991_SNP [dm6]	C	A	2.058e^-4	0.656	SYNONYMOUS_CODING CG13921	TF binding site mE1_TFBS_chinmo
3R	20915351	3R_20915351_SNP [dm3] 3R_25089629_SNP [dm6]	G	A	2.068e^-4	0.656	INTERGENIC
3L	2218310	3L_2218310_SNP [dm3] 3L_2218310_SNP [dm6]	G	T	2.071e^-4	0.656	INTERGENIC	TF binding site mE1_TFBS_inv
2R	18704684	2R_18704684_SNP [dm3] 2R_22817179_SNP [dm6]	T	G	2.084e^-4	0.656	UPSTREAM CG30271 INTRON CG30271
3R	12831570	3R_12831570_SNP [dm3] 3R_17005848_SNP [dm6]	G	A	2.084e^-4	0.656	NON_SYNONYMOUS_CODING Irc
2L	3393567	2L_3393567_SNP [dm3] 2L_3393567_SNP [dm6]	A	G	2.087e^-4	0.656	INTERGENIC
X	5028546	X_5028546_SNP [dm3] X_5134513_SNP [dm6]	T	A	2.091e^-4	0.656	INTRON rg & 1 other
3L	21902451	3L_21902451_SNP [dm3] 3L_21909351_SNP [dm6]	G	A	2.094e^-4	0.656	INTRON mub
2R	16860094	2R_16860094_SNP [dm3] 2R_20972589_SNP [dm6]	C	T	2.097e^-4	0.656	DOWNSTREAM CG15649 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19145977	2R_19145977_SNP [dm3] 2R_23258454_SNP [dm6]	C	T	2.101e^-4	0.656	INTERGENIC
3L	7128661	3L_7128661_SNP [dm3] 3L_7135561_SNP [dm6]	A	T	2.111e^-4	0.656	INTRON melt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	1568125	X_1568125_SNP [dm3] X_1674092_SNP [dm6]	T	G	2.113e^-4	0.656	UTR_3_PRIME CG32809 DOWNSTREAM hfw & 1 other
3L	21398749	3L_21398749_SNP [dm3] 3L_21405649_SNP [dm6]	C	A	2.114e^-4	0.656	INTRON rgn & 1 other
3R	17345728	3R_17345728_SNP [dm3] 3R_21520006_SNP [dm6]	A	G	2.120e^-4	0.656	UPSTREAM CG7956 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	7923513	3R_7923513_SNP [dm3] 3R_12097791_SNP [dm6]	C	G	2.125e^-4	0.656	UPSTREAM dpr17 INTRON dpr17
2R	4318716	2R_4318716_SNP [dm3] 2R_8431211_SNP [dm6]	C	T	2.128e^-4	0.656	UTR_5_PRIME Lcp1
2L	3601032	2L_3601032_SNP [dm3] 2L_3601032_SNP [dm6]	A	G	2.131e^-4	0.656	INTERGENIC	TF binding site mE1_TFBS_sens
2R	16396757	2R_16396757_SNP [dm3] 2R_20509252_SNP [dm6]	T	G	2.133e^-4	0.656	UPSTREAM CR44647 DOWNSTREAM CR44646 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10509328	2L_10509328_SNP [dm3] 2L_10509328_SNP [dm6]	G	A	2.134e^-4	0.656	INTRON CG7384	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14821635	2L_14821635_SNP [dm3] 2L_14821635_SNP [dm6]	C	T	2.141e^-4	0.656	INTERGENIC
2L	5003587	2L_5003587_SNP [dm3] 2L_5003587_SNP [dm6]	A	T	2.141e^-4	0.656	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2R	6538311	2R_6538311_SNP [dm3] 2R_10650806_SNP [dm6]	C	T	2.144e^-4	0.656	DOWNSTREAM CG12934 INTERGENIC
3R	1862786	3R_1862786_SNP [dm3] 3R_6037064_SNP [dm6]	T	A	2.145e^-4	0.656	INTERGENIC
2L	2072331	2L_2072331_SNP [dm3] 2L_2072331_SNP [dm6]	T	C	2.146e^-4	0.656	INTRON dpr3
2R	9234930	2R_9234930_SNP [dm3] 2R_13347425_SNP [dm6]	A	C	2.148e^-4	0.656	INTRON CR44206
2L	9344068	2L_9344068_SNP [dm3] 2L_9344068_SNP [dm6]	G	A	2.152e^-4	0.656	SYNONYMOUS_CODING CG3748
2R	3519129	2R_3519129_SNP [dm3] 2R_7631624_SNP [dm6]	G	T	2.154e^-4	0.656	INTRON CG43340 EXON CR45131	TF binding site mE1_TFBS_cnc
3R	12831819	3R_12831819_SNP [dm3] 3R_17006097_SNP [dm6]	T	C	2.156e^-4	0.656	SPLICE_SITE_REGION Irc INTRON Irc
2L	19720891	2L_19720891_SNP [dm3] 2L_19720891_SNP [dm6]	C	A	2.157e^-4	0.656	INTRON Lar
2R	19618246	2R_19618246_INS [dm3] 2R_23730723_INS [dm6]	T	TTGCTTTC	2.158e^-4	0.656	INTRON Sesn	TF binding site mE1_TFBS_chinmo
2R	9509229	2R_9509229_SNP [dm3] 2R_13621724_SNP [dm6]	A	G	2.159e^-4	0.656	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14100005	2R_14100005_SNP [dm3] 2R_18212500_SNP [dm6]	A	T	2.163e^-4	0.656	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
2L	16024794	2L_16024794_SNP [dm3] 2L_16024794_SNP [dm6]	T	G	2.166e^-4	0.656	INTRON beat-Ic
X	10601483	X_10601483_SNP [dm3] X_10707450_SNP [dm6]	T	C	2.177e^-4	0.658	INTRON X11Lbeta
3L	3497228	3L_3497228_SNP [dm3] 3L_3497228_SNP [dm6]	C	G	2.181e^-4	0.658	INTRON CG42324
2R	12638093	2R_12638093_SNP [dm3] 2R_16750588_SNP [dm6]	A	C	2.186e^-4	0.658	UPSTREAM Acp53Ea DOWNSTREAM Acp53C14c & 1 other INTERGENIC
2L	9758359	2L_9758359_SNP [dm3] 2L_9758359_SNP [dm6]	G	A	2.187e^-4	0.658	UTR_5_PRIME zf30C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	25848526	3R_25848526_SNP [dm3] 3R_30022804_SNP [dm6]	T	G	2.190e^-4	0.658	UPSTREAM Axn & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	5422861	2L_5422861_SNP [dm3] 2L_5422861_SNP [dm6]	T	A	2.193e^-4	0.658	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4560064	2L_4560064_SNP [dm3] 2L_4560064_SNP [dm6]	T	G	2.200e^-4	0.658	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4114059	3L_4114059_SNP [dm3] 3L_4114059_SNP [dm6]	G	A	2.205e^-4	0.658	UTR_3_PRIME Ack DOWNSTREAM Chd64
X	3355890	X_3355890_SNP [dm3] X_3461857_SNP [dm6]	A	C	2.206e^-4	0.658	SPLICE_SITE_REGION CG10801 SYNONYMOUS_CODING CG10801 DOWNSTREAM CG16781 INTRON CR44999 & 1 other
3R	14862122	3R_14862122_SNP [dm3] 3R_19036400_SNP [dm6]	C	A	2.206e^-4	0.658	INTRON CG6026	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10509325	2L_10509325_SNP [dm3] 2L_10509325_SNP [dm6]	C	A	2.209e^-4	0.658	INTRON CG7384	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16185951	2L_16185951_SNP [dm3] 2L_16185951_SNP [dm6]	A	T	2.215e^-4	0.658	INTRON Ca-alpha1D
2L	18568995	2L_18568995_SNP [dm3] 2L_18568995_SNP [dm6]	T	G	2.220e^-4	0.659	INTRON Pde11
2L	19764963	2L_19764963_SNP [dm3] 2L_19764963_SNP [dm6]	A	T	2.236e^-4	0.662	UPSTREAM fbp DOWNSTREAM bsh INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	1609291	3L_1609291_SNP [dm3] 3L_1609291_SNP [dm6]	C	T	2.243e^-4	0.662	INTRON CG33791 & 1 other
2L	18402764	2L_18402764_SNP [dm3] 2L_18402764_SNP [dm6]	A	T	2.245e^-4	0.662	INTERGENIC
2R	13156606	2R_13156606_SNP [dm3] 2R_17269101_SNP [dm6]	A	G	2.250e^-4	0.662	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run
3R	20855522	3R_20855522_SNP [dm3] 3R_25029800_SNP [dm6]	C	T	2.252e^-4	0.662	SYNONYMOUS_CODING Smg6 DOWNSTREAM Hr96	TF binding site BDTNP1_TFBS_twi
2L	14915819	2L_14915819_SNP [dm3] 2L_14915819_SNP [dm6]	C	A	2.253e^-4	0.662	INTRON CG42313
2L	19777027	2L_19777027_SNP [dm3] 2L_19777027_SNP [dm6]	A	G	2.255e^-4	0.662	INTRON CdGAPr	TF binding site mE1_TFBS_cad
3R	17345883	3R_17345883_SNP [dm3] 3R_21520161_SNP [dm6]	A	G	2.272e^-4	0.666	UPSTREAM CG7956 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	6764263	2L_6764263_SNP [dm3] 2L_6764263_SNP [dm6]	C	T	2.277e^-4	0.666	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
3L	9604415	3L_9604415_SNP [dm3] 3L_9611315_SNP [dm6]	T	A	2.278e^-4	0.666	SPLICE_SITE_REGION CG3280 INTRON CG3280	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7262151	2L_7262151_SNP [dm3] 2L_7262151_SNP [dm6]	C	T	2.282e^-4	0.666	INTRON Wnt4	TF binding site mE1_TFBS_cad
3R	20722859	3R_20722859_SNP [dm3] 3R_24897137_SNP [dm6]	T	A	2.297e^-4	0.668	DOWNSTREAM CG13643 INTRON CG11069
2R	14835479	2R_14835479_SNP [dm3] 2R_18947974_SNP [dm6]	A	G	2.298e^-4	0.668	INTRON sano
3L	1275296	3L_1275296_SNP [dm3] 3L_1275296_SNP [dm6]	T	C	2.300e^-4	0.668	UPSTREAM CG32333 DOWNSTREAM CG9134 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	3519025	2R_3519025_SNP [dm3] 2R_7631520_SNP [dm6]	A	C	2.308e^-4	0.668	INTRON CG43340 EXON CR45131
3L	3883004	3L_3883004_SNP [dm3] 3L_3883004_SNP [dm6]	C	A	2.310e^-4	0.668	INTERGENIC
2L	10223487	2L_10223487_SNP [dm3] 2L_10223487_SNP [dm6]	T	C	2.314e^-4	0.668	SYNONYMOUS_CODING CG4908 DOWNSTREAM Prosalpha6 & 1 other	TF binding site mE1_TFBS_sens
3L	8601137	3L_8601137_SNP [dm3] 3L_8608037_SNP [dm6]	T	C	2.316e^-4	0.668	INTRON CG6282
2R	19618228	2R_19618228_MNP [dm3] 2R_23730705_MNP [dm6]	CAAGC	GTGCG	2.322e^-4	0.669	INTRON Sesn
2L	11128388	2L_11128388_SNP [dm3] 2L_11128388_SNP [dm6]	A	G	2.325e^-4	0.669	SYNONYMOUS_CODING Nup160 DOWNSTREAM RfC38	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	5637888	2L_5637888_SNP [dm3] 2L_5637888_SNP [dm6]	C	G	2.329e^-4	0.669	INTRON CG31646
2L	11687979	2L_11687979_SNP [dm3] 2L_11687979_SNP [dm6]	G	C	2.347e^-4	0.673	INTERGENIC
2L	3269425	2L_3269425_SNP [dm3] 2L_3269425_SNP [dm6]	T	G	2.359e^-4	0.675	UPSTREAM CG3347 DOWNSTREAM CR44484 INTERGENIC
3R	19830580	3R_19830580_SNP [dm3] 3R_24004858_SNP [dm6]	C	T	2.366e^-4	0.675	INTRON KrT95D
2L	16005503	2L_16005503_SNP [dm3] 2L_16005503_SNP [dm6]	G	A	2.370e^-4	0.675	UPSTREAM CR44844 DOWNSTREAM CG31820 & 2 others INTRON beat-Ic
3L	18447801	3L_18447801_SNP [dm3] 3L_18454701_SNP [dm6]	C	G	2.378e^-4	0.675	INTERGENIC
3R	4254613	3R_4254613_SNP [dm3] 3R_8428891_SNP [dm6]	A	C	2.387e^-4	0.675	INTRON CG45263
3L	11618229	3L_11618229_SNP [dm3] 3L_11625129_SNP [dm6]	G	A	2.395e^-4	0.675	SYNONYMOUS_CODING CG6083 UPSTREAM CG6084
2L	4629433	2L_4629433_SNP [dm3] 2L_4629433_SNP [dm6]	C	T	2.398e^-4	0.675	INTERGENIC
2R	19618242	2R_19618242_INS [dm3] 2R_23730719_INS [dm6]	G	GT	2.399e^-4	0.675	INTRON Sesn
3R	8557480	3R_8557480_SNP [dm3] 3R_12731758_SNP [dm6]	T	A	2.399e^-4	0.675	INTERGENIC
2L	9410128	2L_9410128_SNP [dm3] 2L_9410128_SNP [dm6]	T	C	2.400e^-4	0.675	INTRON Shawl
3R	17935935	3R_17935935_SNP [dm3] 3R_22110213_SNP [dm6]	T	C	2.402e^-4	0.675	UPSTREAM CG5778 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17460642	X_17460642_SNP [dm3] X_17566609_SNP [dm6]	T	A	2.406e^-4	0.675	UTR_3_PRIME ppk23 DOWNSTREAM ppk23
3L	18193699	3L_18193699_SNP [dm3] 3L_18200599_SNP [dm6]	C	T	2.415e^-4	0.675	UPSTREAM CG7320 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	7584076	3L_7584076_SNP [dm3] 3L_7590976_SNP [dm6]	A	G	2.425e^-4	0.675	UTR_5_PRIME CG7716
3R	24824962	3R_24824962_SNP [dm3] 3R_28999240_SNP [dm6]	A	G	2.426e^-4	0.675	INTRON wat
3L	2171152	3L_2171152_SNP [dm3] 3L_2171152_SNP [dm6]	C	T	2.434e^-4	0.675	UPSTREAM CG5704 DOWNSTREAM CR15821 INTERGENIC
2L	16005500	2L_16005500_SNP [dm3] 2L_16005500_SNP [dm6]	G	A	2.434e^-4	0.675	UPSTREAM CR44844 DOWNSTREAM CG31820 & 2 others INTRON beat-Ic
2R	19569457	2R_19569457_SNP [dm3] 2R_23681934_SNP [dm6]	A	G	2.439e^-4	0.675	SYNONYMOUS_CODING St1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17301400	2R_17301400_SNP [dm3] 2R_21413895_SNP [dm6]	T	G	2.440e^-4	0.675	INTRON Sdc
3L	22962286	3L_22962286_SNP [dm3] 3L_22969186_SNP [dm6]	A	T	2.441e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	18356992	3R_18356992_SNP [dm3] 3R_22531270_SNP [dm6]	T	A	2.446e^-4	0.675	NON_SYNONYMOUS_CODING CG33093 UPSTREAM CG33099 DOWNSTREAM CG5326	TF binding site mE1_TFBS_HSA
2R	2620914	2R_2620914_SNP [dm3] 2R_6733409_SNP [dm6]	T	A	2.447e^-4	0.675	INTRON l_2_01289	TF binding site mE1_TFBS_sens
3R	16388786	3R_16388786_SNP [dm3] 3R_20563064_SNP [dm6]	C	G	2.449e^-4	0.675	SYNONYMOUS_CODING CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19742437	2L_19742437_SNP [dm3] 2L_19742437_SNP [dm6]	T	A	2.455e^-4	0.675	DOWNSTREAM CG10631 EXON CR44906
3L	23840238	3L_23840238_SNP [dm3] 3L_23847138_SNP [dm6]	A	G	2.458e^-4	0.675	INTRON CG40470
X	1560800	X_1560800_SNP [dm3] X_1666767_SNP [dm6]	C	T	2.459e^-4	0.675	NON_SYNONYMOUS_CODING dor INTRON Mur2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	18917572	X_18917572_SNP [dm3] X_19023539_SNP [dm6]	C	T	2.459e^-4	0.675	INTRON CG43759
3R	14933188	3R_14933188_SNP [dm3] 3R_19107466_SNP [dm6]	A	G	2.460e^-4	0.675	INTRON CG6040
2L	13105362	2L_13105362_SNP [dm3] 2L_13105362_SNP [dm6]	C	G	2.462e^-4	0.675	DOWNSTREAM CR45461 INTERGENIC
2R	20115942	2R_20115942_SNP [dm3] 2R_24228419_SNP [dm6]	A	C	2.463e^-4	0.675	INTRON CG30419
2R	2653702	2R_2653702_SNP [dm3] 2R_6766197_SNP [dm6]	T	G	2.470e^-4	0.675	INTRON Epac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15341101	2L_15341101_SNP [dm3] 2L_15341101_SNP [dm6]	T	A	2.471e^-4	0.675	INTERGENIC	TF binding site mE1_TFBS_sens
2L	19720688	2L_19720688_SNP [dm3] 2L_19720688_SNP [dm6]	T	C	2.479e^-4	0.675	INTRON Lar
X	19496100	X_19496100_SNP [dm3] X_19602067_SNP [dm6]	T	G	2.482e^-4	0.675	UPSTREAM CG14220 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	10885952	3L_10885952_DEL [dm3] 3L_10892852_DEL [dm6]	TTTGAAGTTTGTGAGCAAAG...	C	2.488e^-4	0.675	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
3R	20331244	3R_20331244_SNP [dm3] 3R_24505522_SNP [dm6]	G	C	2.491e^-4	0.675	INTERGENIC
2L	4423774	2L_4423774_SNP [dm3] 2L_4423774_SNP [dm6]	C	T	2.492e^-4	0.675	INTRON CG15431	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13105366	2L_13105366_SNP [dm3] 2L_13105366_SNP [dm6]	T	C	2.492e^-4	0.675	DOWNSTREAM CR45461 INTERGENIC
2L	19740911	2L_19740911_SNP [dm3] 2L_19740911_SNP [dm6]	T	G	2.495e^-4	0.675	EXON CR44906	TF binding site mE1_TFBS_Trl
2L	10174737	2L_10174737_SNP [dm3] 2L_10174737_SNP [dm6]	C	A	2.501e^-4	0.675	DOWNSTREAM CG13137 INTRON CG44153
3L	22463059	3L_22463059_SNP [dm3] 3L_22469959_SNP [dm6]	T	C	2.504e^-4	0.675	UPSTREAM CG11426 DOWNSTREAM CG11437 INTERGENIC
3R	13394982	3R_13394982_SNP [dm3] 3R_17569260_SNP [dm6]	C	T	2.505e^-4	0.675	DOWNSTREAM Hmx INTERGENIC
2L	19759059	2L_19759059_SNP [dm3] 2L_19759059_SNP [dm6]	C	G	2.524e^-4	0.677	NON_SYNONYMOUS_CODING CG10463 UPSTREAM CG10628	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3L	15390375	3L_15390375_DEL [dm3] 3L_15397275_DEL [dm6]	GAAATAG	G	2.526e^-4	0.677	INTERGENIC
2L	8306380	2L_8306380_SNP [dm3] 2L_8306380_SNP [dm6]	A	G	2.526e^-4	0.677	SYNONYMOUS_CODING CG7840 DOWNSTREAM Ostgamma	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3831138	2L_3831138_SNP [dm3] 2L_3831138_SNP [dm6]	T	A	2.530e^-4	0.677	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16941562	2L_16941562_SNP [dm3] 2L_16941562_SNP [dm6]	G	A	2.535e^-4	0.677	INTERGENIC
2R	9511253	2R_9511253_SNP [dm3] 2R_13623748_SNP [dm6]	G	C	2.535e^-4	0.677	INTRON fas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	1766489	3R_1766489_SNP [dm3] 3R_5940767_SNP [dm6]	G	A	2.538e^-4	0.677	INTRON CG34113	insulator Insulator_Class_II.mE01
X	1558287	X_1558287_SNP [dm3] X_1664254_SNP [dm6]	A	G	2.556e^-4	0.68	UTR_5_PRIME Mur2B UTR_3_PRIME br UPSTREAM dor	TF binding site BDTNP1_TFBS_dl
X	16660872	X_16660872_SNP [dm3] X_16766839_SNP [dm6]	G	T	2.559e^-4	0.68	INTRON if
X	987493	X_987493_SNP [dm3] X_1093460_SNP [dm6]	G	A	2.567e^-4	0.68	INTRON CG3655
2R	4182147	2R_4182147_SNP [dm3] 2R_8294642_SNP [dm6]	C	T	2.574e^-4	0.68	INTERGENIC
3R	22896371	3R_22896371_SNP [dm3] 3R_27070649_SNP [dm6]	C	T	2.585e^-4	0.68	UPSTREAM spz INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12818831	2R_12818831_SNP [dm3] 2R_16931326_SNP [dm6]	T	A	2.597e^-4	0.68	INTRON Pkc53E
X	9687564	X_9687564_SNP [dm3] X_9793531_SNP [dm6]	T	G	2.597e^-4	0.68	INTRON CG32698
3L	1128634	3L_1128634_SNP [dm3] 3L_1128634_SNP [dm6]	C	T	2.598e^-4	0.68	INTERGENIC	regulatory region REDfly_CRMs
X	2598245	X_2598245_SNP [dm3] X_2704212_SNP [dm6]	T	C	2.598e^-4	0.68	UPSTREAM eIF2B-beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	21398748	3L_21398748_SNP [dm3] 3L_21405648_SNP [dm6]	T	A	2.600e^-4	0.68	INTRON rgn & 1 other
3L	18472600	3L_18472600_SNP [dm3] 3L_18479500_SNP [dm6]	C	G	2.603e^-4	0.68	DOWNSTREAM CR44673 INTERGENIC
3R	19218549	3R_19218549_SNP [dm3] 3R_23392827_SNP [dm6]	G	T	2.609e^-4	0.68	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25671769	3R_25671769_SNP [dm3] 3R_29846047_SNP [dm6]	C	A	2.612e^-4	0.68	INTRON Cad99C
X	12526763	X_12526763_SNP [dm3] X_12632730_SNP [dm6]	C	T	2.614e^-4	0.68	UPSTREAM Tomosyn INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
2R	19618212	2R_19618212_INS [dm3] 2R_23730689_INS [dm6]	C	GCG	2.621e^-4	0.68	INTRON Sesn
2R	19618214	2R_19618214_SNP [dm3] 2R_23730691_SNP [dm6]	C	A	2.621e^-4	0.68	INTRON Sesn
2R	19618237	2R_19618237_SNP [dm3] 2R_23730714_SNP [dm6]	C	T	2.621e^-4	0.68	INTRON Sesn
2R	13944415	2R_13944415_SNP [dm3] 2R_18056910_SNP [dm6]	A	T	2.623e^-4	0.68	NON_SYNONYMOUS_CODING CG10912	TF binding site mE1_TFBS_cad
2L	18405917	2L_18405917_SNP [dm3] 2L_18405917_SNP [dm6]	C	T	2.627e^-4	0.68	INTERGENIC
3L	3577422	3L_3577422_SNP [dm3] 3L_3577422_SNP [dm6]	G	T	2.633e^-4	0.68	INTRON Eip63E
2R	19618217	2R_19618217_SNP [dm3] 2R_23730694_SNP [dm6]	C	G	2.634e^-4	0.68	INTRON Sesn
2L	15163297	2L_15163297_SNP [dm3] 2L_15163297_SNP [dm6]	C	T	2.636e^-4	0.68	UTR_3_PRIME CG4168
3R	7754460	3R_7754460_SNP [dm3] 3R_11928738_SNP [dm6]	A	T	2.636e^-4	0.68	INTRON Cad87A
3L	21861171	3L_21861171_SNP [dm3] 3L_21868071_SNP [dm6]	A	G	2.645e^-4	0.68	INTRON mub	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21211546	3L_21211546_SNP [dm3] 3L_21218446_SNP [dm6]	C	T	2.650e^-4	0.68	SYNONYMOUS_CODING Ilk DOWNSTREAM Ilk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5482066	3R_5482066_SNP [dm3] 3R_9656344_SNP [dm6]	G	A	2.650e^-4	0.68	SYNONYMOUS_CODING CG9492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16353940	2R_16353940_SNP [dm3] 2R_20466435_SNP [dm6]	A	C	2.654e^-4	0.68	INTRON CG12484
2L	11336659	2L_11336659_INS [dm3] 2L_11336659_INS [dm6]	A	AT	2.656e^-4	0.68	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	11336662	2L_11336662_SNP [dm3] 2L_11336662_SNP [dm6]	T	G	2.656e^-4	0.68	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	18357005	3R_18357005_SNP [dm3] 3R_22531283_SNP [dm6]	C	T	2.657e^-4	0.68	NON_SYNONYMOUS_CODING CG33093 UPSTREAM CG33099 DOWNSTREAM CG5326	TF binding site mE1_TFBS_HSA
3L	1778381	3L_1778381_SNP [dm3] 3L_1778381_SNP [dm6]	A	C	2.663e^-4	0.68	UPSTREAM CG2021 DOWNSTREAM alpha-Spec & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	3405683	2R_3405683_SNP [dm3] 2R_7518178_SNP [dm6]	G	A	2.664e^-4	0.68	SYNONYMOUS_CODING CG1602	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	10501822	3R_10501822_SNP [dm3] 3R_14676100_SNP [dm6]	T	C	2.679e^-4	0.68	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12335304	3R_12335304_SNP [dm3] 3R_16509582_SNP [dm6]	C	G	2.680e^-4	0.68	INTRON CG42342	TF binding site BDTNP1_TFBS_twi
3R	26094860	3R_26094860_SNP [dm3] 3R_30269138_SNP [dm6]	C	T	2.681e^-4	0.68	INTERGENIC
2L	2898834	2L_2898834_SNP [dm3] 2L_2898834_SNP [dm6]	C	A	2.697e^-4	0.68	INTRON lilli	TF binding site BDTNP1_TFBS_dl
2R	19523758	2R_19523758_SNP [dm3] 2R_23636235_SNP [dm6]	T	A	2.699e^-4	0.68	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	6884009	X_6884009_SNP [dm3] X_6989976_SNP [dm6]	A	C	2.701e^-4	0.68	INTRON ogre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	1531231	3R_1531231_SNP [dm3] 3R_5705509_SNP [dm6]	T	A	2.703e^-4	0.68	INTRON plx	TF binding site BDTNP1_TFBS_twi
X	7069918	X_7069918_SNP [dm3] X_7175885_SNP [dm6]	C	T	2.708e^-4	0.68	INTRON CG9650 & 1 other
3L	2218243	3L_2218243_SNP [dm3] 3L_2218243_SNP [dm6]	C	A	2.726e^-4	0.68	INTERGENIC	TF binding site mE1_TFBS_inv
3R	905698	3R_905698_SNP [dm3] 3R_5079976_SNP [dm6]	A	G	2.726e^-4	0.68	UTR_3_PRIME corto
2R	6967128	2R_6967128_SNP [dm3] 2R_11079623_SNP [dm6]	C	T	2.726e^-4	0.68	INTRON luna
2R	12233325	2R_12233325_SNP [dm3] 2R_16345820_SNP [dm6]	A	C	2.730e^-4	0.68	UTR_3_PRIME Nup62 DOWNSTREAM wcd	TF binding site mE1_TFBS_cad
2L	18569058	2L_18569058_SNP [dm3] 2L_18569058_SNP [dm6]	A	T	2.731e^-4	0.68	INTRON Pde11
X	1566081	X_1566081_SNP [dm3] X_1672048_SNP [dm6]	C	T	2.735e^-4	0.68	SYNONYMOUS_CODING hfw	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	1805299	X_1805299_SNP [dm3] X_1911266_SNP [dm6]	T	C	2.735e^-4	0.68	SYNONYMOUS_CODING Rbcn-3B INTRON mip130	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3321361	2L_3321361_SNP [dm3] 2L_3321361_SNP [dm6]	T	G	2.740e^-4	0.68	INTRON CG8837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5637886	2L_5637886_SNP [dm3] 2L_5637886_SNP [dm6]	G	A	2.748e^-4	0.68	INTRON CG31646
X	10595196	X_10595196_DEL [dm3] X_10701163_DEL [dm6]	AGAA	A	2.749e^-4	0.68	INTRON X11Lbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	4883884	3R_4883884_SNP [dm3] 3R_9058162_SNP [dm6]	G	T	2.753e^-4	0.68	INTRON Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3012949	3L_3012949_SNP [dm3] 3L_3012949_SNP [dm6]	T	C	2.755e^-4	0.68	INTERGENIC
2L	13216519	2L_13216519_SNP [dm3] 2L_13216519_SNP [dm6]	T	A	2.755e^-4	0.68	UTR_3_PRIME CG9426 DOWNSTREAM snRNA:U2:34ABb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
X	8130624	X_8130624_SNP [dm3] X_8236591_SNP [dm6]	T	C	2.759e^-4	0.68	SYNONYMOUS_CODING sdt	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	1566618	X_1566618_SNP [dm3] X_1672585_SNP [dm6]	A	C	2.762e^-4	0.68	SYNONYMOUS_CODING hfw DOWNSTREAM CG32809	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23370665	3R_23370665_SNP [dm3] 3R_27544943_SNP [dm6]	T	A	2.763e^-4	0.68	SYNONYMOUS_CODING Gr98c
3R	6901204	3R_6901204_SNP [dm3] 3R_11075482_SNP [dm6]	A	T	2.768e^-4	0.68	INTERGENIC
3L	12378509	3L_12378509_SNP [dm3] 3L_12385409_SNP [dm6]	A	T	2.769e^-4	0.68	INTRON Ncc69
3L	7862081	3L_7862081_SNP [dm3] 3L_7868981_SNP [dm6]	C	A	2.770e^-4	0.68	UPSTREAM CG32365 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	1862785	3R_1862785_SNP [dm3] 3R_6037063_SNP [dm6]	C	A	2.780e^-4	0.68	INTERGENIC
2R	16123583	2R_16123583_SNP [dm3] 2R_20236078_SNP [dm6]	G	A	2.780e^-4	0.68	UPSTREAM CG11099 DOWNSTREAM CG44624 & 1 other INTERGENIC
3R	26094945	3R_26094945_SNP [dm3] 3R_30269223_SNP [dm6]	T	A	2.786e^-4	0.68	INTERGENIC
2R	8106771	2R_8106771_SNP [dm3] 2R_12219266_SNP [dm6]	C	A	2.787e^-4	0.68	INTERGENIC	TF binding site mE1_TFBS_inv
3L	2115981	3L_2115981_SNP [dm3] 3L_2115981_SNP [dm6]	T	G	2.791e^-4	0.68	UPSTREAM sls INTERGENIC	TF binding site mE1_TFBS_Trl
X	7454800	X_7454800_SNP [dm3] X_7560767_SNP [dm6]	T	C	2.792e^-4	0.68	INTERGENIC
2R	9035444	2R_9035444_SNP [dm3] 2R_13147939_SNP [dm6]	C	T	2.798e^-4	0.68	SYNONYMOUS_CODING Ack-like INTRON Ack-like	TF binding site mE1_TFBS_cad
3R	17346099	3R_17346099_SNP [dm3] 3R_21520377_SNP [dm6]	G	A	2.806e^-4	0.68	UPSTREAM CG7956 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	7346751	3L_7346751_SNP [dm3] 3L_7353651_SNP [dm6]	A	G	2.808e^-4	0.68	UTR_3_PRIME CTCF DOWNSTREAM qm
X	14316078	X_14316078_INS [dm3] X_14422045_INS [dm6]	G	GCAAGCAC	2.812e^-4	0.68	INTRON dpr8	TF binding site mE1_TFBS_inv
2L	15252447	2L_15252447_SNP [dm3] 2L_15252447_SNP [dm6]	C	T	2.814e^-4	0.68	SPLICE_SITE_REGION dao INTRON dao	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12715671	2R_12715671_SNP [dm3] 2R_16828166_SNP [dm6]	T	C	2.814e^-4	0.68	UPSTREAM CR43650 DOWNSTREAM CG34460 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
4	499761	4_499761_SNP [dm3] 4_479135_SNP [dm6]	T	A	2.816e^-4	0.68	INTRON Asator
2R	14870537	2R_14870537_SNP [dm3] 2R_18983032_SNP [dm6]	G	C	2.817e^-4	0.68	INTERGENIC
X	1579684	X_1579684_SNP [dm3] X_1685651_SNP [dm6]	C	T	2.819e^-4	0.68	SYNONYMOUS_CODING CG32809 UTR_5_PRIME CG32809 UPSTREAM b6 DOWNSTREAM CG14797
3R	6879291	3R_6879291_SNP [dm3] 3R_11053569_SNP [dm6]	T	C	2.828e^-4	0.681	INTERGENIC
2L	13774437	2L_13774437_SNP [dm3] 2L_13774437_SNP [dm6]	G	T	2.832e^-4	0.681	UTR_3_PRIME CG9008 DOWNSTREAM TM9SF4 & 1 other
X	12405635	X_12405635_SNP [dm3] X_12511602_SNP [dm6]	G	A	2.839e^-4	0.681	INTRON CG2556
2L	15341389	2L_15341389_SNP [dm3] 2L_15341389_SNP [dm6]	T	C	2.840e^-4	0.681	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	1557007	X_1557007_SNP [dm3] X_1662974_SNP [dm6]	C	T	2.843e^-4	0.681	UTR_3_PRIME br INTRON Mur2B
2L	14507456	2L_14507456_SNP [dm3] 2L_14507456_SNP [dm6]	G	A	2.854e^-4	0.681	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	10339466	2L_10339466_SNP [dm3] 2L_10339466_SNP [dm6]	C	T	2.854e^-4	0.681	UTR_5_PRIME SamDC DOWNSTREAM GATAd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11550478	3R_11550478_SNP [dm3] 3R_15724756_SNP [dm6]	G	C	2.858e^-4	0.681	INTERGENIC
2R	19613251	2R_19613251_DEL [dm3] 2R_23725728_DEL [dm6]	CAGC	T	2.864e^-4	0.681	INTRON Sesn
2R	18864405	2R_18864405_SNP [dm3] 2R_22976882_SNP [dm6]	C	T	2.865e^-4	0.681	INTERGENIC
2R	3245048	2R_3245048_SNP [dm3] 2R_7357543_SNP [dm6]	T	C	2.865e^-4	0.681	INTRON Dscam1
2R	4850521	2R_4850521_SNP [dm3] 2R_8963016_SNP [dm6]	T	C	2.867e^-4	0.681	DOWNSTREAM CG8216 & 1 other INTERGENIC
3L	11392702	3L_11392702_SNP [dm3] 3L_11399602_SNP [dm6]	C	A	2.871e^-4	0.682	INTERGENIC
2R	16670641	2R_16670641_SNP [dm3] 2R_20783136_SNP [dm6]	T	C	2.881e^-4	0.682	INTERGENIC
2L	21816764	2L_21816764_SNP [dm3] 2L_21816764_SNP [dm6]	C	G	2.885e^-4	0.682	INTERGENIC
X	18888878	X_18888878_SNP [dm3] X_18994845_SNP [dm6]	C	T	2.885e^-4	0.682	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
3L	9601964	3L_9601964_SNP [dm3] 3L_9608864_SNP [dm6]	T	C	2.885e^-4	0.682	SYNONYMOUS_CODING CG3280
2R	11611852	2R_11611852_SNP [dm3] 2R_15724347_SNP [dm6]	C	A	2.891e^-4	0.682	INTERGENIC
3R	7923514	3R_7923514_SNP [dm3] 3R_12097792_SNP [dm6]	T	A	2.902e^-4	0.682	UPSTREAM dpr17 INTRON dpr17
3L	21861220	3L_21861220_SNP [dm3] 3L_21868120_SNP [dm6]	A	G	2.907e^-4	0.682	INTRON mub	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20467344	2L_20467344_SNP [dm3] 2L_20467344_SNP [dm6]	C	G	2.909e^-4	0.682	INTRON CR44980
X	11814814	X_11814814_MNP [dm3] X_11920781_MNP [dm6]	GCAA	ATGC	2.912e^-4	0.682	NON_SYNONYMOUS_CODING Sclp UPSTREAM CR32660 DOWNSTREAM Sclp	TF binding site mE1_TFBS_Trl
3R	21263415	3R_21263415_SNP [dm3] 3R_25437693_SNP [dm6]	T	G	2.913e^-4	0.682	INTRON Fur1
2R	19242852	2R_19242852_SNP [dm3] 2R_23355329_SNP [dm6]	A	G	2.915e^-4	0.682	UTR_5_PRIME Rpi DOWNSTREAM CG30409	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3244735	2L_3244735_SNP [dm3] 2L_3244735_SNP [dm6]	G	A	2.916e^-4	0.682	INTERGENIC
X	19238928	X_19238928_SNP [dm3] X_19344895_SNP [dm6]	G	A	2.920e^-4	0.682	INTRON nAChRalpha7
X	13500777	X_13500777_SNP [dm3] X_13606744_SNP [dm6]	A	G	2.923e^-4	0.682	SYNONYMOUS_CODING CG11178	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19618245	2R_19618245_SNP [dm3] 2R_23730722_SNP [dm6]	T	C	2.927e^-4	0.682	INTRON Sesn	TF binding site mE1_TFBS_chinmo
3L	1609287	3L_1609287_SNP [dm3] 3L_1609287_SNP [dm6]	C	G	2.936e^-4	0.682	INTRON CG33791 & 1 other
3R	6882395	3R_6882395_SNP [dm3] 3R_11056673_SNP [dm6]	C	T	2.937e^-4	0.682	INTERGENIC
3L	10885936	3L_10885936_DEL [dm3] 3L_10892836_DEL [dm6]	GTGGGCGTA	G	2.941e^-4	0.682	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
X	12526774	X_12526774_SNP [dm3] X_12632741_SNP [dm6]	T	C	2.942e^-4	0.682	UPSTREAM Tomosyn INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
3R	11632773	3R_11632773_SNP [dm3] 3R_15807051_SNP [dm6]	T	A	2.953e^-4	0.683	INTRON alpha-Man-IIb
3R	2122746	3R_2122746_SNP [dm3] 3R_6297024_SNP [dm6]	G	C	2.953e^-4	0.683	INTERGENIC
2R	12638177	2R_12638177_SNP [dm3] 2R_16750672_SNP [dm6]	T	C	2.968e^-4	0.684	UPSTREAM Acp53Ea DOWNSTREAM Acp53C14c & 1 other INTERGENIC
2L	19676493	2L_19676493_SNP [dm3] 2L_19676493_SNP [dm6]	C	G	2.969e^-4	0.684	INTRON Lar
3R	2122163	3R_2122163_SNP [dm3] 3R_6296441_SNP [dm6]	C	A	2.974e^-4	0.684	INTERGENIC
3L	21354438	3L_21354438_SNP [dm3] 3L_21361338_SNP [dm6]	T	G	2.985e^-4	0.684	DOWNSTREAM CG32440 INTERGENIC
3L	8972331	3L_8972331_SNP [dm3] 3L_8979231_SNP [dm6]	C	G	2.986e^-4	0.684	INTRON CG5644	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_Trl
2R	19146006	2R_19146006_SNP [dm3] 2R_23258483_SNP [dm6]	A	C	2.989e^-4	0.684	INTERGENIC
3R	19830629	3R_19830629_SNP [dm3] 3R_24004907_SNP [dm6]	C	T	2.991e^-4	0.684	INTRON KrT95D
3R	17342569	3R_17342569_SNP [dm3] 3R_21516847_SNP [dm6]	T	C	2.991e^-4	0.684	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	4434811	X_4434811_SNP [dm3] X_4540778_SNP [dm6]	G	T	2.993e^-4	0.684	UPSTREAM CHOp24 & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	19740910	2L_19740910_SNP [dm3] 2L_19740910_SNP [dm6]	T	G	2.995e^-4	0.684	EXON CR44906	TF binding site mE1_TFBS_Trl
2R	18077719	2R_18077719_SNP [dm3] 2R_22190214_SNP [dm6]	G	A	2.996e^-4	0.684	UTR_3_PRIME Swim DOWNSTREAM Vps35	TF binding site mE1_TFBS_cad
2L	14507591	2L_14507591_SNP [dm3] 2L_14507591_SNP [dm6]	A	G	3.020e^-4	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	12638164	2R_12638164_DEL [dm3] 2R_16750659_DEL [dm6]	CC	C	3.021e^-4	0.685	UPSTREAM Acp53Ea DOWNSTREAM Acp53C14c & 1 other INTERGENIC
X	12569519	X_12569519_SNP [dm3] X_12675486_SNP [dm6]	G	T	3.022e^-4	0.685	INTRON Tis11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13282598	3L_13282598_SNP [dm3] 3L_13289498_SNP [dm6]	G	T	3.024e^-4	0.685	INTERGENIC
X	5180901	X_5180901_SNP [dm3] X_5286868_SNP [dm6]	A	C	3.025e^-4	0.685	INTERGENIC
2L	3106467	2L_3106467_SNP [dm3] 2L_3106467_SNP [dm6]	C	A	3.027e^-4	0.685	INTRON toc	TF binding site mE1_TFBS_Trl
2R	10709767	2R_10709767_SNP [dm3] 2R_14822262_SNP [dm6]	T	A	3.029e^-4	0.685	INTERGENIC
2R	3020169	2R_3020169_SNP [dm3] 2R_7132664_SNP [dm6]	G	A	3.044e^-4	0.687	UPSTREAM Cyp9b2 INTERGENIC
2R	3147564	2R_3147564_SNP [dm3] 2R_7260059_SNP [dm6]	A	G	3.047e^-4	0.687	SYNONYMOUS_CODING CG1850	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18917489	X_18917489_SNP [dm3] X_19023456_SNP [dm6]	C	T	3.056e^-4	0.687	INTRON CG43759
3R	18357032	3R_18357032_SNP [dm3] 3R_22531310_SNP [dm6]	G	A	3.057e^-4	0.687	SYNONYMOUS_CODING CG33093 UPSTREAM CG33099 DOWNSTREAM CG5326	TF binding site mE1_TFBS_HSA
3R	20331267	3R_20331267_SNP [dm3] 3R_24505545_SNP [dm6]	G	A	3.058e^-4	0.687	INTERGENIC
2L	19715673	2L_19715673_SNP [dm3] 2L_19715673_SNP [dm6]	C	T	3.059e^-4	0.687	INTRON Lar
2L	19777072	2L_19777072_SNP [dm3] 2L_19777072_SNP [dm6]	A	C	3.062e^-4	0.687	INTRON CdGAPr	TF binding site mE1_TFBS_cad
2L	19188895	2L_19188895_SNP [dm3] 2L_19188895_SNP [dm6]	G	A	3.070e^-4	0.688	SYNONYMOUS_CODING pigeon
2L	19199966	2L_19199966_SNP [dm3] 2L_19199966_SNP [dm6]	T	G	3.073e^-4	0.688	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22615296	3R_22615296_SNP [dm3] 3R_26789574_SNP [dm6]	C	T	3.079e^-4	0.688	INTERGENIC
X	8129123	X_8129123_INS [dm3] X_8235090_INS [dm6]	A	AA	3.087e^-4	0.688	INTRON sdt	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	19264882	3R_19264882_SNP [dm3] 3R_23439160_SNP [dm6]	C	T	3.099e^-4	0.688	INTRON CG4374
3R	18357030	3R_18357030_SNP [dm3] 3R_22531308_SNP [dm6]	T	C	3.100e^-4	0.688	SYNONYMOUS_CODING CG33093 UPSTREAM CG33099 DOWNSTREAM CG5326	TF binding site mE1_TFBS_HSA
3R	8013673	3R_8013673_SNP [dm3] 3R_12187951_SNP [dm6]	T	A	3.107e^-4	0.688	INTERGENIC
2L	11224734	2L_11224734_SNP [dm3] 2L_11224734_SNP [dm6]	G	T	3.110e^-4	0.688	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	24258658	3R_24258658_SNP [dm3] 3R_28432936_SNP [dm6]	C	T	3.114e^-4	0.688	INTRON beat-VI
2R	13058580	2R_13058580_SNP [dm3] 2R_17171075_SNP [dm6]	G	A	3.114e^-4	0.688	INTERGENIC
2L	19753862	2L_19753862_SNP [dm3] 2L_19753862_SNP [dm6]	T	A	3.114e^-4	0.688	NON_SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	1934540	3R_1934540_SNP [dm3] 3R_6108818_SNP [dm6]	C	G	3.116e^-4	0.688	DOWNSTREAM Obp83ef INTRON Obp83cd
3L	5813057	3L_5813057_SNP [dm3] 3L_5819957_SNP [dm6]	T	C	3.116e^-4	0.688	INTRON vn
2L	17967031	2L_17967031_SNP [dm3] 2L_17967031_SNP [dm6]	G	A	3.117e^-4	0.688	NON_SYNONYMOUS_CODING btv INTRON CG5674	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18917497	X_18917497_SNP [dm3] X_19023464_SNP [dm6]	G	A	3.124e^-4	0.688	INTRON CG43759
3L	12083956	3L_12083956_SNP [dm3] 3L_12090856_SNP [dm6]	A	T	3.125e^-4	0.688	INTERGENIC
3R	24694968	3R_24694968_SNP [dm3] 3R_28869246_SNP [dm6]	G	A	3.128e^-4	0.688	SYNONYMOUS_CODING spg UTR_3_PRIME spg	TF binding site mE1_TFBS_chinmo
3R	25678091	3R_25678091_SNP [dm3] 3R_29852369_SNP [dm6]	T	C	3.131e^-4	0.688	SYNONYMOUS_CODING Cad99C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20722857	3R_20722857_SNP [dm3] 3R_24897135_SNP [dm6]	C	A	3.144e^-4	0.688	DOWNSTREAM CG13643 INTRON CG11069
2R	14660323	2R_14660323_SNP [dm3] 2R_18772818_SNP [dm6]	C	T	3.148e^-4	0.688	SYNONYMOUS_CODING Mctp
2R	9228070	2R_9228070_SNP [dm3] 2R_13340565_SNP [dm6]	G	T	3.152e^-4	0.688	INTRON CR44206	TF binding site mE1_TFBS_chinmo
2L	8888197	2L_8888197_SNP [dm3] 2L_8888197_SNP [dm6]	C	T	3.157e^-4	0.688	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
X	17663647	X_17663647_SNP [dm3] X_17769614_SNP [dm6]	C	T	3.160e^-4	0.688	SPLICE_SITE_REGION unc-4 SYNONYMOUS_CODING unc-4	TF binding site BDTNP1_TFBS_dl
3L	5956497	3L_5956497_SNP [dm3] 3L_5963397_SNP [dm6]	G	A	3.160e^-4	0.688	INTERGENIC
3R	11913749	3R_11913749_SNP [dm3] 3R_16088027_SNP [dm6]	C	T	3.169e^-4	0.688	SYNONYMOUS_CODING Mhcl DOWNSTREAM sxe2
X	1578420	X_1578420_SNP [dm3] X_1684387_SNP [dm6]	C	T	3.176e^-4	0.688	SYNONYMOUS_CODING CG14797 INTRON CG32809	TF binding site mE1_TFBS_chinmo
X	18913503	X_18913503_SNP [dm3] X_19019470_SNP [dm6]	C	A	3.190e^-4	0.688	INTRON CG43759
3L	11664628	3L_11664628_SNP [dm3] 3L_11671528_SNP [dm6]	C	T	3.190e^-4	0.688	INTRON CG32085
3R	25457108	3R_25457108_SNP [dm3] 3R_29631386_SNP [dm6]	G	T	3.200e^-4	0.688	UTR_3_PRIME Dop1R2
3L	4958358	3L_4958358_SNP [dm3] 3L_4958358_SNP [dm6]	T	C	3.207e^-4	0.688	INTRON Con
3R	20722848	3R_20722848_SNP [dm3] 3R_24897126_SNP [dm6]	G	T	3.209e^-4	0.688	DOWNSTREAM CG13643 INTRON CG11069
2L	4569466	2L_4569466_SNP [dm3] 2L_4569466_SNP [dm6]	G	A	3.209e^-4	0.688	INTRON dp	TF binding site mE1_TFBS_sens
2R	16860059	2R_16860059_SNP [dm3] 2R_20972554_SNP [dm6]	C	T	3.214e^-4	0.688	DOWNSTREAM CG15649 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14149808	3L_14149808_SNP [dm3] 3L_14156708_SNP [dm6]	C	A	3.214e^-4	0.688	INTERGENIC	regulatory region REDfly_CRMs
X	6674192	X_6674192_SNP [dm3] X_6780159_SNP [dm6]	G	A	3.214e^-4	0.688	UPSTREAM shf DOWNSTREAM C3G INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12717349	X_12717349_SNP [dm3] X_12823316_SNP [dm6]	C	T	3.215e^-4	0.688	INTRON Pde9
3R	23158733	3R_23158733_SNP [dm3] 3R_27333011_SNP [dm6]	C	T	3.218e^-4	0.688	INTERGENIC
2L	19740892	2L_19740892_SNP [dm3] 2L_19740892_SNP [dm6]	A	C	3.218e^-4	0.688	EXON CR44906	TF binding site mE1_TFBS_Trl
3L	10271305	3L_10271305_INS [dm3] 3L_10278205_INS [dm6]	T	TA	3.221e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	2120935	3R_2120935_SNP [dm3] 3R_6295213_SNP [dm6]	C	T	3.223e^-4	0.688	INTERGENIC
2L	19160370	2L_19160370_SNP [dm3] 2L_19160370_SNP [dm6]	C	G	3.223e^-4	0.688	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr mE1_TFBS_sbb
2L	12342920	2L_12342920_SNP [dm3] 2L_12342920_SNP [dm6]	C	T	3.225e^-4	0.688	DOWNSTREAM CG43813 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17255667	2L_17255667_SNP [dm3] 2L_17255667_SNP [dm6]	C	A	3.231e^-4	0.688	INTRON beat-IIIc
3R	12335302	3R_12335302_SNP [dm3] 3R_16509580_SNP [dm6]	C	T	3.236e^-4	0.688	INTRON CG42342	TF binding site BDTNP1_TFBS_twi
2L	11224739	2L_11224739_SNP [dm3] 2L_11224739_SNP [dm6]	C	T	3.243e^-4	0.688	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	6890705	2L_6890705_SNP [dm3] 2L_6890705_SNP [dm6]	A	G	3.253e^-4	0.688	INTRON Nlg2
X	13500600	X_13500600_SNP [dm3] X_13606567_SNP [dm6]	C	G	3.254e^-4	0.688	SYNONYMOUS_CODING CG11178 DOWNSTREAM CR44654	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	14316141	X_14316141_SNP [dm3] X_14422108_SNP [dm6]	G	A	3.254e^-4	0.688	INTRON dpr8	TF binding site mE1_TFBS_inv
3L	10886201	3L_10886201_SNP [dm3] 3L_10893101_SNP [dm6]	G	T	3.255e^-4	0.688	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
2L	16430701	2L_16430701_SNP [dm3] 2L_16430701_SNP [dm6]	G	A	3.262e^-4	0.688	INTRON CG5888
2R	19146410	2R_19146410_SNP [dm3] 2R_23258887_SNP [dm6]	A	T	3.270e^-4	0.688	INTERGENIC
2R	6393893	2R_6393893_SNP [dm3] 2R_10506388_SNP [dm6]	T	G	3.271e^-4	0.688	DOWNSTREAM lola INTRON lola	TF binding site mE1_TFBS_inv
2L	11083661	2L_11083661_SNP [dm3] 2L_11083661_SNP [dm6]	G	C	3.284e^-4	0.688	UTR_3_PRIME AstCC
3R	7287634	3R_7287634_SNP [dm3] 3R_11461912_SNP [dm6]	T	C	3.288e^-4	0.688	INTRON CG17230
X	10600824	X_10600824_INS [dm3] X_10706791_INS [dm6]	C	CTAAATTATTCCAATTC...	3.292e^-4	0.688	INTRON X11Lbeta
3L	5665655	3L_5665655_SNP [dm3] 3L_5672555_SNP [dm6]	T	C	3.297e^-4	0.688	UTR_5_PRIME sif INTRON sif
X	5095189	X_5095189_SNP [dm3] X_5201156_SNP [dm6]	G	T	3.299e^-4	0.688	INTRON rg & 1 other
3R	14974784	3R_14974784_SNP [dm3] 3R_19149062_SNP [dm6]	C	T	3.301e^-4	0.688	SYNONYMOUS_CODING CG5835 UPSTREAM CR44107
X	13797412	X_13797412_SNP [dm3] X_13903379_SNP [dm6]	T	A	3.301e^-4	0.688	INTRON mamo
2L	17963042	2L_17963042_SNP [dm3] 2L_17963042_SNP [dm6]	A	T	3.310e^-4	0.688	UPSTREAM CG5674 INTRON btv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	8795612	3L_8795612_SNP [dm3] 3L_8802512_SNP [dm6]	T	G	3.310e^-4	0.688	NON_SYNONYMOUS_CODING CG34426 UPSTREAM CG13311
3L	7087280	3L_7087280_SNP [dm3] 3L_7094180_SNP [dm6]	T	A	3.313e^-4	0.688	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_sbb
2R	10799921	2R_10799921_SNP [dm3] 2R_14912416_SNP [dm6]	G	A	3.314e^-4	0.688	UPSTREAM CG10249 INTRON CG10249
2L	19757479	2L_19757479_SNP [dm3] 2L_19757479_SNP [dm6]	A	C	3.314e^-4	0.688	NON_SYNONYMOUS_CODING CG10628 UPSTREAM CG10631
3R	23966939	3R_23966939_SNP [dm3] 3R_28141217_SNP [dm6]	T	A	3.318e^-4	0.688	INTERGENIC
3R	1951941	3R_1951941_SNP [dm3] 3R_6126219_SNP [dm6]	A	T	3.321e^-4	0.688	DOWNSTREAM CR43486 INTERGENIC
3L	17042263	3L_17042263_SNP [dm3] 3L_17049163_SNP [dm6]	A	G	3.321e^-4	0.688	UPSTREAM rogdi DOWNSTREAM TpnC73F INTERGENIC
3R	23515995	3R_23515995_SNP [dm3] 3R_27690273_SNP [dm6]	T	C	3.323e^-4	0.688	INTRON CG12880	TF binding site mE1_TFBS_chinmo
2L	15341912	2L_15341912_SNP [dm3] 2L_15341912_SNP [dm6]	C	T	3.326e^-4	0.688	INTERGENIC
2L	15341917	2L_15341917_SNP [dm3] 2L_15341917_SNP [dm6]	T	G	3.326e^-4	0.688	INTERGENIC
X	19921678	X_19921678_SNP [dm3] X_20027645_SNP [dm6]	A	G	3.344e^-4	0.69	INTRON Dop2R
2L	10223538	2L_10223538_SNP [dm3] 2L_10223538_SNP [dm6]	T	G	3.349e^-4	0.69	SYNONYMOUS_CODING CG4908 DOWNSTREAM Prosalpha6 & 1 other	TF binding site mE1_TFBS_sens
2L	20341956	2L_20341956_SNP [dm3] 2L_20341956_SNP [dm6]	C	A	3.353e^-4	0.69	UTR_5_PRIME spir INTRON spir	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	15932876	2L_15932876_SNP [dm3] 2L_15932876_SNP [dm6]	C	G	3.353e^-4	0.69	INTRON beat-Ib
2L	19765100	2L_19765100_SNP [dm3] 2L_19765100_SNP [dm6]	T	C	3.358e^-4	0.69	UPSTREAM fbp DOWNSTREAM bsh INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	5812899	2L_5812899_SNP [dm3] 2L_5812899_SNP [dm6]	G	A	3.358e^-4	0.69	DOWNSTREAM CG43307 INTERGENIC
3R	20597919	3R_20597919_SNP [dm3] 3R_24772197_SNP [dm6]	C	T	3.366e^-4	0.69	START_GAINED CG42331 UTR_5_PRIME CG42331
2R	16409365	2R_16409365_SNP [dm3] 2R_20521860_SNP [dm6]	C	T	3.367e^-4	0.69	INTERGENIC
3L	15755592	3L_15755592_SNP [dm3] 3L_15762492_SNP [dm6]	A	G	3.370e^-4	0.69	INTERGENIC
3L	21870137	3L_21870137_SNP [dm3] 3L_21877037_SNP [dm6]	T	G	3.375e^-4	0.69	INTRON mub
2L	11314842	2L_11314842_SNP [dm3] 2L_11314842_SNP [dm6]	A	T	3.377e^-4	0.69	INTERGENIC
2R	4014979	2R_4014979_SNP [dm3] 2R_8127474_SNP [dm6]	A	C	3.384e^-4	0.69	UPSTREAM Socs44A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	21060347	3L_21060347_SNP [dm3] 3L_21067247_SNP [dm6]	A	C	3.387e^-4	0.69	UPSTREAM siz INTRON siz	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	16012613	3L_16012613_SNP [dm3] 3L_16019513_SNP [dm6]	G	T	3.388e^-4	0.69	DOWNSTREAM CR43949 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8583499	3R_8583499_SNP [dm3] 3R_12757777_SNP [dm6]	T	C	3.389e^-4	0.69	INTRON beat-Vc	TF binding site mE1_TFBS_inv
2R	17745136	2R_17745136_SNP [dm3] 2R_21857631_SNP [dm6]	T	A	3.390e^-4	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2R	12982568	2R_12982568_SNP [dm3] 2R_17095063_SNP [dm6]	G	T	3.409e^-4	0.692	SPLICE_SITE_REGION GstS1 INTRON GstS1	TF binding site mE1_TFBS_cad
X	21370284	X_21370284_SNP [dm3] X_21499257_SNP [dm6]	C	T	3.411e^-4	0.692	INTRON CR45082	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	11896174	2L_11896174_SNP [dm3] 2L_11896174_SNP [dm6]	C	G	3.424e^-4	0.694	INTRON Pde1c
3R	23727021	3R_23727021_SNP [dm3] 3R_27901299_SNP [dm6]	A	C	3.425e^-4	0.694	INTRON CG34353
2L	19759528	2L_19759528_SNP [dm3] 2L_19759528_SNP [dm6]	C	A	3.444e^-4	0.694	UPSTREAM CG10628 INTRON CG10463	TF binding site mE1_TFBS_sens
2L	19742454	2L_19742454_SNP [dm3] 2L_19742454_SNP [dm6]	T	A	3.449e^-4	0.694	DOWNSTREAM CG10631 EXON CR44906
3L	10886200	3L_10886200_SNP [dm3] 3L_10893100_SNP [dm6]	T	A	3.452e^-4	0.694	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
3R	23285650	3R_23285650_SNP [dm3] 3R_27459928_SNP [dm6]	T	A	3.453e^-4	0.694	INTERGENIC
3L	22160822	3L_22160822_SNP [dm3] 3L_22167722_SNP [dm6]	G	A	3.454e^-4	0.694	INTRON olf413
2R	12968048	2R_12968048_SNP [dm3] 2R_17080543_SNP [dm6]	A	T	3.461e^-4	0.694	INTRON CG30460
2L	8539346	2L_8539346_DEL [dm3] 2L_8539346_DEL [dm6]	AGTAA	A	3.464e^-4	0.694	INTRON CG17834
3L	17042344	3L_17042344_SNP [dm3] 3L_17049244_SNP [dm6]	T	C	3.477e^-4	0.694	UPSTREAM rogdi DOWNSTREAM TpnC73F INTERGENIC
3L	14238414	3L_14238414_SNP [dm3] 3L_14245314_SNP [dm6]	A	G	3.477e^-4	0.694	UPSTREAM CR44560 EXON CR44561
2L	6737526	2L_6737526_SNP [dm3] 2L_6737526_SNP [dm6]	G	T	3.481e^-4	0.694	SYNONYMOUS_CODING TTLL3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19571856	2R_19571856_SNP [dm3] 2R_23684333_SNP [dm6]	C	A	3.482e^-4	0.694	DOWNSTREAM l_2_efl INTRON St3	TF binding site mE1_TFBS_inv
2R	19571860	2R_19571860_SNP [dm3] 2R_23684337_SNP [dm6]	T	A	3.482e^-4	0.694	DOWNSTREAM l_2_efl INTRON St3	TF binding site mE1_TFBS_inv
3L	11618235	3L_11618235_SNP [dm3] 3L_11625135_SNP [dm6]	G	C	3.482e^-4	0.694	SYNONYMOUS_CODING CG6083 UPSTREAM CG6084
2R	3887512	2R_3887512_SNP [dm3] 2R_8000007_SNP [dm6]	T	C	3.487e^-4	0.694	DOWNSTREAM CG11191 INTERGENIC
2L	19557210	2L_19557210_SNP [dm3] 2L_19557210_SNP [dm6]	G	C	3.487e^-4	0.694	UPSTREAM Tep5 DOWNSTREAM Tep4 INTERGENIC
2L	15268380	2L_15268380_SNP [dm3] 2L_15268380_SNP [dm6]	A	G	3.490e^-4	0.694	SYNONYMOUS_CODING Cul3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12086508	3L_12086508_SNP [dm3] 3L_12093408_SNP [dm6]	C	G	3.494e^-4	0.694	INTERGENIC
2R	12219488	2R_12219488_SNP [dm3] 2R_16331983_SNP [dm6]	G	T	3.494e^-4	0.694	INTRON Vha44	TF binding site mE1_TFBS_HSA
3R	17346843	3R_17346843_SNP [dm3] 3R_21521121_SNP [dm6]	C	T	3.500e^-4	0.695	SYNONYMOUS_CODING CG7956	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
2R	10680651	2R_10680651_SNP [dm3] 2R_14793146_SNP [dm6]	G	A	3.514e^-4	0.696	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	23771737	3R_23771737_SNP [dm3] 3R_27946015_SNP [dm6]	A	T	3.521e^-4	0.696	INTRON mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	20448316	X_20448316_SNP [dm3] X_20577289_SNP [dm6]	A	C	3.522e^-4	0.696	INTERGENIC
3R	19961118	3R_19961118_SNP [dm3] 3R_24135396_SNP [dm6]	A	G	3.523e^-4	0.696	SYNONYMOUS_CODING Sec10 DOWNSTREAM Tsc1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26633737	3R_26633737_SNP [dm3] 3R_30808015_SNP [dm6]	A	G	3.541e^-4	0.697	UPSTREAM cindr DOWNSTREAM dj-1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	15161446	2L_15161446_SNP [dm3] 2L_15161446_SNP [dm6]	C	T	3.547e^-4	0.697	DOWNSTREAM CG4168 & 1 other INTERGENIC
3L	10211862	3L_10211862_SNP [dm3] 3L_10218762_SNP [dm6]	A	G	3.560e^-4	0.697	SYNONYMOUS_CODING CG32055
2L	17508373	2L_17508373_SNP [dm3] 2L_17508373_SNP [dm6]	T	C	3.560e^-4	0.697	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_cad
3R	25677152	3R_25677152_SNP [dm3] 3R_29851430_SNP [dm6]	G	A	3.566e^-4	0.697	SYNONYMOUS_CODING Cad99C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	4185711	2R_4185711_SNP [dm3] 2R_8298206_SNP [dm6]	G	T	3.567e^-4	0.697	DOWNSTREAM mir-280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9541579	2R_9541579_DEL [dm3] 2R_13654074_DEL [dm6]	ATACAGCAGCAGCTCTATA...	A	3.569e^-4	0.697	INTRON fas
2L	15861313	2L_15861313_SNP [dm3] 2L_15861313_SNP [dm6]	G	A	3.569e^-4	0.697	INTERGENIC
2L	13473557	2L_13473557_INS [dm3] 2L_13473557_INS [dm6]	A	AA	3.570e^-4	0.697	INTRON CG42784
2L	8306077	2L_8306077_SNP [dm3] 2L_8306077_SNP [dm6]	G	A	3.578e^-4	0.697	SYNONYMOUS_CODING CG7840 DOWNSTREAM Scgalpha & 1 other	TF binding site mE1_TFBS_sens
3R	14367136	3R_14367136_SNP [dm3] 3R_18541414_SNP [dm6]	A	C	3.578e^-4	0.697	INTRON fru
3R	1598823	3R_1598823_SNP [dm3] 3R_5773101_SNP [dm6]	G	A	3.581e^-4	0.697	INTRON CG2082
3R	9833411	3R_9833411_SNP [dm3] 3R_14007689_SNP [dm6]	T	A	3.585e^-4	0.697	INTRON rdx
X	5095290	X_5095290_SNP [dm3] X_5201257_SNP [dm6]	A	T	3.585e^-4	0.697	INTRON rg & 1 other
3R	27453100	3R_27453100_SNP [dm3] 3R_31627378_SNP [dm6]	G	A	3.586e^-4	0.697	INTRON kek6
3L	7786059	3L_7786059_SNP [dm3] 3L_7792959_SNP [dm6]	G	A	3.589e^-4	0.697	INTRON CG32369
2L	19791376	2L_19791376_INS [dm3] 2L_19791376_INS [dm6]	A	AA	3.603e^-4	0.697	UPSTREAM CG10466 INTRON CdGAPr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
X	1566312	X_1566312_SNP [dm3] X_1672279_SNP [dm6]	A	G	3.604e^-4	0.697	SYNONYMOUS_CODING hfw DOWNSTREAM CG32809	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	23359675	3R_23359675_DEL [dm3] 3R_27533953_DEL [dm6]	ATTTGGGTTAACTTTTA...	A	3.606e^-4	0.697	DOWNSTREAM CG12885 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
3R	27460428	3R_27460428_DEL [dm3] 3R_31634706_DEL [dm6]	TT	T	3.608e^-4	0.697	INTRON kek6
3L	7897745	3L_7897745_SNP [dm3] 3L_7904645_SNP [dm6]	T	C	3.610e^-4	0.697	INTRON pbl
3L	10428792	3L_10428792_SNP [dm3] 3L_10435692_SNP [dm6]	T	C	3.612e^-4	0.697	INTERGENIC
2L	6764272	2L_6764272_SNP [dm3] 2L_6764272_SNP [dm6]	C	G	3.614e^-4	0.697	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
2L	6764389	2L_6764389_SNP [dm3] 2L_6764389_SNP [dm6]	C	T	3.616e^-4	0.697	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
3L	22581396	3L_22581396_SNP [dm3] 3L_22588296_SNP [dm6]	C	A	3.618e^-4	0.697	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	11472990	3L_11472990_SNP [dm3] 3L_11479890_SNP [dm6]	G	A	3.625e^-4	0.697	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	17643363	2R_17643363_SNP [dm3] 2R_21755858_SNP [dm6]	A	T	3.645e^-4	0.699	INTERGENIC
3R	18894195	3R_18894195_SNP [dm3] 3R_23068473_SNP [dm6]	T	C	3.647e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8234038	2L_8234038_SNP [dm3] 2L_8234038_SNP [dm6]	C	G	3.647e^-4	0.699	INTRON Pvr
X	5145254	X_5145254_SNP [dm3] X_5251221_SNP [dm6]	A	T	3.655e^-4	0.699	UTR_3_PRIME CG15465 & 1 other DOWNSTREAM rg
3R	11623328	3R_11623328_SNP [dm3] 3R_15797606_SNP [dm6]	C	T	3.657e^-4	0.699	NON_SYNONYMOUS_CODING nsl1
2L	3419489	2L_3419489_SNP [dm3] 2L_3419489_SNP [dm6]	C	T	3.662e^-4	0.699	INTRON pgant2
X	19495575	X_19495575_SNP [dm3] X_19601542_SNP [dm6]	G	C	3.662e^-4	0.699	INTRON CG14220	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	19496085	X_19496085_SNP [dm3] X_19602052_SNP [dm6]	A	T	3.667e^-4	0.699	UPSTREAM CG14220 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	8559516	X_8559516_SNP [dm3] X_8665483_SNP [dm6]	A	G	3.669e^-4	0.699	INTERGENIC
2R	8556755	2R_8556755_SNP [dm3] 2R_12669250_SNP [dm6]	C	T	3.676e^-4	0.7	INTRON nemy
2R	6750764	2R_6750764_SNP [dm3] 2R_10863259_SNP [dm6]	G	A	3.682e^-4	0.7	INTRON CG30015
3L	7418878	3L_7418878_DEL [dm3] 3L_7425778_DEL [dm6]	GCTGCCGGGAAAATG...	G	3.685e^-4	0.7	INTRON CG42458
3R	17346864	3R_17346864_SNP [dm3] 3R_21521142_SNP [dm6]	C	G	3.687e^-4	0.7	SYNONYMOUS_CODING CG7956	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	4177073	2R_4177073_SNP [dm3] 2R_8289568_SNP [dm6]	T	A	3.690e^-4	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	3398298	2R_3398298_SNP [dm3] 2R_7510793_SNP [dm6]	C	T	3.702e^-4	0.701	SYNONYMOUS_STOP az2 UPSTREAM CG12736	TF binding site mE1_TFBS_cad
2L	3373924	2L_3373924_SNP [dm3] 2L_3373924_SNP [dm6]	A	G	3.708e^-4	0.702	SYNONYMOUS_CODING CG15412 UPSTREAM CG34394	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25676357	3R_25676357_SNP [dm3] 3R_29850635_SNP [dm6]	C	T	3.720e^-4	0.703	SYNONYMOUS_CODING Cad99C	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	6966549	2R_6966549_SNP [dm3] 2R_11079044_SNP [dm6]	G	T	3.732e^-4	0.704	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10599532	X_10599532_SNP [dm3] X_10705499_SNP [dm6]	T	C	3.734e^-4	0.704	SYNONYMOUS_CODING X11Lbeta	TF binding site mE1_TFBS_chinmo
2L	14915033	2L_14915033_SNP [dm3] 2L_14915033_SNP [dm6]	A	G	3.746e^-4	0.704	INTRON CG42313
2L	11385878	2L_11385878_SNP [dm3] 2L_11385878_SNP [dm6]	C	T	3.749e^-4	0.704	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2L	11444454	2L_11444454_SNP [dm3] 2L_11444454_SNP [dm6]	G	T	3.752e^-4	0.704	INTRON salm	TF binding site BDTNP1_TFBS_dl
3L	7845930	3L_7845930_SNP [dm3] 3L_7852830_SNP [dm6]	A	G	3.761e^-4	0.704	INTRON Pdp1
X	12915737	X_12915737_SNP [dm3] X_13021704_SNP [dm6]	A	T	3.762e^-4	0.704	UPSTREAM CG2209 INTRON rad
2L	14002943	2L_14002943_SNP [dm3] 2L_14002943_SNP [dm6]	T	G	3.767e^-4	0.704	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.038e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1573 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	9507749	3L_9507749_SNP [dm3] 3L_9514649_SNP [dm6]	A	T	5.391e^-7	0.522	SYNONYMOUS_CODING CG33700 UPSTREAM CR33701
2R	15967306	2R_15967306_SNP [dm3] 2R_20079801_SNP [dm6]	A	C	5.564e^-7	0.522	INTERGENIC
2R	13077717	2R_13077717_SNP [dm3] 2R_17190212_SNP [dm6]	A	T	1.165e^-6	0.728	DOWNSTREAM CR45323 INTERGENIC
3L	14758645	3L_14758645_SNP [dm3] 3L_14765545_SNP [dm6]	C	T	2.472e^-6	1	SYNONYMOUS_CODING CG9384	TF binding site mE1_TFBS_cad
2L	1632386	2L_1632386_SNP [dm3] 2L_1632386_SNP [dm6]	A	T	3.314e^-6	1	INTERGENIC
2R	15967355	2R_15967355_SNP [dm3] 2R_20079850_SNP [dm6]	A	C	3.705e^-6	1	INTERGENIC
2R	15967316	2R_15967316_SNP [dm3] 2R_20079811_SNP [dm6]	T	G	5.146e^-6	1	INTERGENIC
2R	15967323	2R_15967323_SNP [dm3] 2R_20079818_SNP [dm6]	T	C	5.761e^-6	1	INTERGENIC
X	17674054	X_17674054_SNP [dm3] X_17780021_SNP [dm6]	C	A	6.288e^-6	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	823983	3L_823983_SNP [dm3] 3L_823983_SNP [dm6]	A	C	6.399e^-6	1	INTERGENIC
2L	8897084	2L_8897084_SNP [dm3] 2L_8897084_SNP [dm6]	T	A	7.516e^-6	1	INTERGENIC
X	16622977	X_16622977_SNP [dm3] X_16728944_SNP [dm6]	G	C	8.343e^-6	1	SYNONYMOUS_CODING CG9634
3R	9954837	3R_9954837_SNP [dm3] 3R_14129115_SNP [dm6]	A	C	9.046e^-6	1	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8897037	2L_8897037_SNP [dm3] 2L_8897037_SNP [dm6]	T	C	1.262e^-5	1	INTERGENIC
3L	19510497	3L_19510497_SNP [dm3] 3L_19517397_SNP [dm6]	T	C	1.273e^-5	1	DOWNSTREAM Cpr76Ba INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12085531	3L_12085531_SNP [dm3] 3L_12092431_SNP [dm6]	T	C	1.434e^-5	1	INTERGENIC
2R	18160821	2R_18160821_SNP [dm3] 2R_22273316_SNP [dm6]	G	A	1.500e^-5	1	INTRON dve	TF binding site mE1_TFBS_chinmo
2L	7258591	2L_7258591_SNP [dm3] 2L_7258591_SNP [dm6]	T	C	1.543e^-5	1	DOWNSTREAM CG31909 INTRON Wnt4	TF binding site mE1_TFBS_zfh1
3L	22269526	3L_22269526_SNP [dm3] 3L_22276426_SNP [dm6]	T	C	1.551e^-5	1	UPSTREAM srpk79D INTRON srpk79D	TF binding site mE1_TFBS_cad
X	16622941	X_16622941_SNP [dm3] X_16728908_SNP [dm6]	T	C	1.686e^-5	1	SYNONYMOUS_CODING CG9634
3L	8795867	3L_8795867_SNP [dm3] 3L_8802767_SNP [dm6]	T	G	1.704e^-5	1	SYNONYMOUS_CODING CG34426 UPSTREAM CG13311 DOWNSTREAM CG32023	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15787453	3R_15787453_SNP [dm3] 3R_19961731_SNP [dm6]	G	C	1.818e^-5	1	INTRON Hs6st
2L	1632388	2L_1632388_SNP [dm3] 2L_1632388_SNP [dm6]	T	A	1.827e^-5	1	INTERGENIC
3L	1889842	3L_1889842_SNP [dm3] 3L_1889842_SNP [dm6]	C	G	1.981e^-5	1	NON_SYNONYMOUS_CODING Tmhs
2L	1333973	2L_1333973_SNP [dm3] 2L_1333973_SNP [dm6]	A	G	2.094e^-5	1	UPSTREAM CG5440 INTERGENIC
2L	7238312	2L_7238312_SNP [dm3] 2L_7238312_SNP [dm6]	G	T	2.269e^-5	1	INTRON Ndae1
3R	23482833	3R_23482833_SNP [dm3] 3R_27657111_SNP [dm6]	C	A	2.270e^-5	1	UTR_3_PRIME Mlc1 UPSTREAM tau DOWNSTREAM Mlc1
2R	7571908	2R_7571908_SNP [dm3] 2R_11684403_SNP [dm6]	G	A	2.274e^-5	1	UTR_3_PRIME CG13196 INTRON Buffy
2L	7939352	2L_7939352_SNP [dm3] 2L_7939352_SNP [dm6]	C	G	2.297e^-5	1	INTRON Snoo
2L	17551088	2L_17551088_SNP [dm3] 2L_17551088_SNP [dm6]	C	T	2.404e^-5	1	INTERGENIC
3L	14758600	3L_14758600_SNP [dm3] 3L_14765500_SNP [dm6]	T	C	2.471e^-5	1	SYNONYMOUS_CODING CG9384	TF binding site mE1_TFBS_cad
3R	25080671	3R_25080671_SNP [dm3] 3R_29254949_SNP [dm6]	A	G	2.480e^-5	1	UTR_5_PRIME stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	10031273	X_10031273_SNP [dm3] X_10137240_SNP [dm6]	A	C	2.564e^-5	1	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13077706	2R_13077706_SNP [dm3] 2R_17190201_SNP [dm6]	G	T	2.570e^-5	1	DOWNSTREAM CR45323 INTERGENIC
2R	15775706	2R_15775706_SNP [dm3] 2R_19888201_SNP [dm6]	A	T	2.583e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	16570446	2L_16570446_SNP [dm3] 2L_16570446_SNP [dm6]	T	C	2.706e^-5	1	INTRON CG42389
X	20631996	X_20631996_SNP [dm3] X_20760969_SNP [dm6]	G	A	2.744e^-5	1	UPSTREAM CR43838 DOWNSTREAM shakB INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	25251249	3R_25251249_DEL [dm3] 3R_29425527_DEL [dm6]	TACAT	T	2.974e^-5	1	INTRON Ptp99A
2R	19400395	2R_19400395_SNP [dm3] 2R_23512872_SNP [dm6]	C	G	3.109e^-5	1	UPSTREAM CG3906 INTERGENIC
3L	22159403	3L_22159403_SNP [dm3] 3L_22166303_SNP [dm6]	A	C	3.132e^-5	1	INTRON olf413
3L	22196644	3L_22196644_SNP [dm3] 3L_22203544_SNP [dm6]	G	A	3.146e^-5	1	INTRON olf413
3L	22157429	3L_22157429_SNP [dm3] 3L_22164329_SNP [dm6]	T	C	3.199e^-5	1	INTRON olf413	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	22182115	3L_22182115_SNP [dm3] 3L_22189015_SNP [dm6]	G	A	3.199e^-5	1	INTRON olf413	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8141498	3L_8141498_SNP [dm3] 3L_8148398_SNP [dm6]	C	T	3.247e^-5	1	INTRON CG13676
2L	1835028	2L_1835028_SNP [dm3] 2L_1835028_SNP [dm6]	T	G	3.345e^-5	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	1440258	2L_1440258_SNP [dm3] 2L_1440258_SNP [dm6]	G	A	3.399e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	22270316	3L_22270316_SNP [dm3] 3L_22277216_SNP [dm6]	A	T	3.621e^-5	1	UPSTREAM srpk79D INTRON srpk79D	TF binding site mE1_TFBS_cad
3R	23771596	3R_23771596_SNP [dm3] 3R_27945874_SNP [dm6]	C	G	3.856e^-5	1	INTRON mfrn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	9508986	3L_9508986_SNP [dm3] 3L_9515886_SNP [dm6]	G	T	3.871e^-5	1	INTRON CG33700
3R	9961956	3R_9961956_SNP [dm3] 3R_14136234_SNP [dm6]	G	T	3.948e^-5	1	INTERGENIC
2R	15775705	2R_15775705_SNP [dm3] 2R_19888200_SNP [dm6]	T	C	3.987e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	15331475	2L_15331475_SNP [dm3] 2L_15331475_SNP [dm6]	C	T	4.016e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13725114	2L_13725114_INS [dm3] 2L_13725114_INS [dm6]	A	AATTGTTTTTTA...	4.082e^-5	1	INTERGENIC
2L	20135821	2L_20135821_SNP [dm3] 2L_20135821_SNP [dm6]	G	C	4.247e^-5	1	UPSTREAM CG10651 INTERGENIC
2L	11317807	2L_11317807_SNP [dm3] 2L_11317807_SNP [dm6]	T	C	4.304e^-5	1	INTERGENIC
X	13797412	X_13797412_SNP [dm3] X_13903379_SNP [dm6]	T	A	4.341e^-5	1	INTRON mamo
2R	19400339	2R_19400339_SNP [dm3] 2R_23512816_SNP [dm6]	G	T	4.393e^-5	1	UPSTREAM CG3906 INTERGENIC
3L	12085483	3L_12085483_SNP [dm3] 3L_12092383_SNP [dm6]	T	G	4.614e^-5	1	INTERGENIC
2R	5574450	2R_5574450_SNP [dm3] 2R_9686945_SNP [dm6]	T	C	4.945e^-5	1	INTERGENIC
2L	6947649	2L_6947649_SNP [dm3] 2L_6947649_SNP [dm6]	A	G	5.032e^-5	1	SYNONYMOUS_CODING ihog	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1333040	2L_1333040_SNP [dm3] 2L_1333040_SNP [dm6]	G	A	5.047e^-5	1	INTERGENIC
3L	12085518	3L_12085518_SNP [dm3] 3L_12092418_SNP [dm6]	G	T	5.089e^-5	1	INTERGENIC
2L	7258581	2L_7258581_SNP [dm3] 2L_7258581_SNP [dm6]	T	C	5.149e^-5	1	DOWNSTREAM CG31909 INTRON Wnt4	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	13515572	3L_13515572_SNP [dm3] 3L_13522472_SNP [dm6]	C	A	5.292e^-5	1	UTR_3_PRIME bru-3
3R	25080586	3R_25080586_SNP [dm3] 3R_29254864_SNP [dm6]	C	T	5.328e^-5	1	INTRON stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	8888098	2L_8888098_SNP [dm3] 2L_8888098_SNP [dm6]	A	G	5.332e^-5	1	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	7005590	2L_7005590_SNP [dm3] 2L_7005590_SNP [dm6]	G	A	5.740e^-5	1	INTRON uif
3L	6602556	3L_6602556_SNP [dm3] 3L_6609456_SNP [dm6]	C	G	5.894e^-5	1	UTR_5_PRIME CG8398 UPSTREAM CG8398 & 1 other DOWNSTREAM CG8368
2R	16915826	2R_16915826_SNP [dm3] 2R_21028321_SNP [dm6]	A	C	6.146e^-5	1	DOWNSTREAM CR45148 INTERGENIC
X	20631296	X_20631296_SNP [dm3] X_20760269_SNP [dm6]	C	A	6.207e^-5	1	DOWNSTREAM CR44710 & 1 other INTRON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	22153167	X_22153167_SNP [dm3] X_22751331_SNP [dm6]	T	C	6.232e^-5	1	INTRON CR44997	TF binding site BDTNP1_TFBS_twi
2L	16529740	2L_16529740_SNP [dm3] 2L_16529740_SNP [dm6]	G	A	6.276e^-5	1	UPSTREAM snoRNA:Me28S-C1237 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
3R	25775486	3R_25775486_SNP [dm3] 3R_29949764_SNP [dm6]	G	A	6.398e^-5	1	INTERGENIC
2L	16418107	2L_16418107_SNP [dm3] 2L_16418107_SNP [dm6]	T	A	6.461e^-5	1	UPSTREAM snoRNA:Me28S-A2958 INTRON CG5888
X	10031049	X_10031049_SNP [dm3] X_10137016_SNP [dm6]	G	A	6.550e^-5	1	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19713229	2L_19713229_SNP [dm3] 2L_19713229_SNP [dm6]	A	T	6.564e^-5	1	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7141817	2L_7141817_SNP [dm3] 2L_7141817_SNP [dm6]	C	A	6.568e^-5	1	UPSTREAM CR44612 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	14373168	3L_14373168_SNP [dm3] 3L_14380068_SNP [dm6]	T	A	6.579e^-5	1	INTERGENIC
X	20632532	X_20632532_SNP [dm3] X_20761505_SNP [dm6]	A	G	6.581e^-5	1	UTR_3_PRIME shakB UPSTREAM CR43838
X	4434794	X_4434794_SNP [dm3] X_4540761_SNP [dm6]	C	A	6.587e^-5	1	UPSTREAM CHOp24 & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	21913681	3R_21913681_SNP [dm3] 3R_26087959_SNP [dm6]	G	A	6.615e^-5	1	INTRON dys
3L	7896776	3L_7896776_SNP [dm3] 3L_7903676_SNP [dm6]	T	G	6.689e^-5	1	UPSTREAM pbl INTRON pbl
2L	10903438	2L_10903438_SNP [dm3] 2L_10903438_SNP [dm6]	C	T	6.846e^-5	1	DOWNSTREAM CR45724 INTERGENIC
3R	26846432	3R_26846432_SNP [dm3] 3R_31020710_SNP [dm6]	A	G	6.917e^-5	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	13103614	2L_13103614_SNP [dm3] 2L_13103614_SNP [dm6]	T	A	6.965e^-5	1	INTERGENIC
X	20633321	X_20633321_SNP [dm3] X_20762294_SNP [dm6]	G	C	7.049e^-5	1	UTR_3_PRIME shakB
3R	12031715	3R_12031715_SNP [dm3] 3R_16205993_SNP [dm6]	G	T	7.075e^-5	1	UPSTREAM mtSSB INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	19665216	2R_19665216_SNP [dm3] 2R_23777693_SNP [dm6]	A	G	7.155e^-5	1	INTRON CG9850
2L	7238267	2L_7238267_SNP [dm3] 2L_7238267_SNP [dm6]	T	G	7.355e^-5	1	INTRON Ndae1
X	17174558	X_17174558_SNP [dm3] X_17280525_SNP [dm6]	A	C	7.370e^-5	1	UTR_3_PRIME f DOWNSTREAM CG8664
X	22338444	X_22338444_INS [dm3] X_22936608_INS [dm6]	T	TGT	7.374e^-5	1	INTERGENIC
X	4531035	X_4531035_SNP [dm3] X_4637002_SNP [dm6]	C	G	7.613e^-5	1	UPSTREAM CG12179 INTRON pon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7238324	2L_7238324_SNP [dm3] 2L_7238324_SNP [dm6]	G	T	7.637e^-5	1	INTRON Ndae1
X	20632856	X_20632856_SNP [dm3] X_20761829_SNP [dm6]	G	T	7.674e^-5	1	UTR_3_PRIME shakB UPSTREAM CR43838
X	7433877	X_7433877_SNP [dm3] X_7539844_SNP [dm6]	C	T	7.732e^-5	1	INTRON CG32719
2R	6719969	2R_6719969_SNP [dm3] 2R_10832464_SNP [dm6]	T	A	7.745e^-5	1	INTRON CG12344
3L	1609287	3L_1609287_SNP [dm3] 3L_1609287_SNP [dm6]	C	G	7.790e^-5	1	INTRON CG33791 & 1 other
3R	9961902	3R_9961902_INS [dm3] 3R_14136180_INS [dm6]	A	AAATCATATGTT...	7.791e^-5	1	INTERGENIC
3L	14657143	3L_14657143_SNP [dm3] 3L_14664043_SNP [dm6]	A	G	7.989e^-5	1	INTRON dlp
2L	15080519	2L_15080519_SNP [dm3] 2L_15080519_SNP [dm6]	C	A	8.043e^-5	1	INTRON CG15270
3L	15050077	3L_15050077_SNP [dm3] 3L_15056977_SNP [dm6]	G	A	8.301e^-5	1	INTRON Sytbeta
3R	19497351	3R_19497351_SNP [dm3] 3R_23671629_SNP [dm6]	T	A	8.465e^-5	1	INTERGENIC
3R	9961889	3R_9961889_DEL [dm3] 3R_14136167_DEL [dm6]	AAAAAGTACATC...	A	8.522e^-5	1	INTERGENIC
3L	8795804	3L_8795804_SNP [dm3] 3L_8802704_SNP [dm6]	A	G	8.571e^-5	1	SYNONYMOUS_CODING CG34426 UPSTREAM CG13311 DOWNSTREAM CG32023	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17551090	2L_17551090_SNP [dm3] 2L_17551090_SNP [dm6]	T	C	8.603e^-5	1	INTERGENIC
3L	22331819	3L_22331819_SNP [dm3] 3L_22338719_SNP [dm6]	C	T	8.614e^-5	1	INTRON Ten-m
3L	9909647	3L_9909647_SNP [dm3] 3L_9916547_SNP [dm6]	C	T	8.623e^-5	1	INTRON CG34356
3R	17667778	3R_17667778_DEL [dm3] 3R_21842056_DEL [dm6]	TT	T	8.882e^-5	1	DOWNSTREAM Gr93b INTERGENIC	TF binding site BDTNP1_TFBS_sna
X	22153168	X_22153168_SNP [dm3] X_22751332_SNP [dm6]	T	A	8.913e^-5	1	INTRON CR44997	TF binding site BDTNP1_TFBS_twi
X	12235124	X_12235124_SNP [dm3] X_12341091_SNP [dm6]	T	A	8.946e^-5	1	INTERGENIC
3L	22597248	3L_22597248_SNP [dm3] 3L_22604148_SNP [dm6]	T	G	9.005e^-5	1	INTRON CG14459
3L	22597545	3L_22597545_SNP [dm3] 3L_22604445_SNP [dm6]	T	G	9.096e^-5	1	INTRON CG14459
X	4434810	X_4434810_SNP [dm3] X_4540777_SNP [dm6]	T	C	9.122e^-5	1	UPSTREAM CHOp24 & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	6520118	3R_6520118_SNP [dm3] 3R_10694396_SNP [dm6]	G	A	9.314e^-5	1	SYNONYMOUS_CODING Skeletor UTR_3_PRIME Skeletor	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20059740	2R_20059740_SNP [dm3] 2R_24172217_SNP [dm6]	C	A	9.575e^-5	1	SYNONYMOUS_CODING CG3328	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	22600615	3L_22600615_SNP [dm3] 3L_22607515_SNP [dm6]	G	A	9.641e^-5	1	DOWNSTREAM CG6914 INTRON CG14459
3L	5144503	3L_5144503_SNP [dm3] 3L_5151403_SNP [dm6]	G	T	9.649e^-5	1	INTRON Gen	TF binding site mE1_TFBS_HSA
X	20631729	X_20631729_SNP [dm3] X_20760702_SNP [dm6]	G	A	9.678e^-5	1	DOWNSTREAM shakB EXON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	18140585	3L_18140585_SNP [dm3] 3L_18147485_SNP [dm6]	T	G	9.691e^-5	1	INTERGENIC
2L	3836778	2L_3836778_SNP [dm3] 2L_3836778_SNP [dm6]	T	C	9.699e^-5	1	UPSTREAM slp2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15967678	2R_15967678_SNP [dm3] 2R_20080173_SNP [dm6]	T	G	9.719e^-5	1	INTERGENIC
2L	1333048	2L_1333048_SNP [dm3] 2L_1333048_SNP [dm6]	C	T	9.749e^-5	1	INTERGENIC
2L	7141832	2L_7141832_SNP [dm3] 2L_7141832_SNP [dm6]	T	G	9.779e^-5	1	UPSTREAM CR44612 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	14758047	3L_14758047_SNP [dm3] 3L_14764947_SNP [dm6]	A	G	9.856e^-5	1	SYNONYMOUS_CODING CG9384	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9468400	3R_9468400_SNP [dm3] 3R_13642678_SNP [dm6]	C	T	9.972e^-5	1	SYNONYMOUS_CODING sqd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9961961	3R_9961961_SNP [dm3] 3R_14136239_SNP [dm6]	A	G	1.006e^-4	1	INTERGENIC
3L	7167350	3L_7167350_SNP [dm3] 3L_7174250_SNP [dm6]	C	T	1.010e^-4	1	UTR_3_PRIME Dscam2 INTRON Dscam2
3L	22277137	3L_22277137_SNP [dm3] 3L_22284037_SNP [dm6]	A	T	1.012e^-4	1	UTR_3_PRIME srpk79D DOWNSTREAM Hem & 1 other
X	5465819	X_5465819_SNP [dm3] X_5571786_SNP [dm6]	C	T	1.019e^-4	1	INTERGENIC
2L	12087547	2L_12087547_SNP [dm3] 2L_12087547_SNP [dm6]	T	C	1.020e^-4	1	EXON CR44593	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4531813	X_4531813_SNP [dm3] X_4637780_SNP [dm6]	G	A	1.038e^-4	1	SYNONYMOUS_CODING pon	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6639306	X_6639306_SNP [dm3] X_6745273_SNP [dm6]	G	A	1.043e^-4	1	UPSTREAM tRNA:CR32740 INTRON CR44895	TF binding site mE1_TFBS_sens
3L	8141492	3L_8141492_SNP [dm3] 3L_8148392_SNP [dm6]	G	T	1.044e^-4	1	INTRON CG13676
X	20632048	X_20632048_INS [dm3] X_20761021_INS [dm6]	T	TTATGTATATAT...	1.045e^-4	1	UPSTREAM CR43838 DOWNSTREAM shakB INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	22556620	3L_22556620_SNP [dm3] 3L_22563520_SNP [dm6]	G	C	1.053e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2498965	X_2498965_SNP [dm3] X_2604932_SNP [dm6]	C	T	1.064e^-4	1	SYNONYMOUS_CODING Zw10 UPSTREAM Klp3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
X	4434808	X_4434808_SNP [dm3] X_4540775_SNP [dm6]	C	T	1.067e^-4	1	UPSTREAM CHOp24 & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	11211074	3R_11211074_SNP [dm3] 3R_15385352_SNP [dm6]	G	T	1.069e^-4	1	NON_SYNONYMOUS_CODING Rbp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1993125	X_1993125_SNP [dm3] X_2099092_SNP [dm6]	A	G	1.088e^-4	1	INTRON csw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24923761	3R_24923761_SNP [dm3] 3R_29098039_SNP [dm6]	A	G	1.089e^-4	1	NON_SYNONYMOUS_CODING CG11873 UTR_5_PRIME CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16008031	3L_16008031_DEL [dm3] 3L_16014931_DEL [dm6]	AAA	A	1.094e^-4	1	INTERGENIC
2L	9078597	2L_9078597_DEL [dm3] 2L_9078597_DEL [dm6]	AA	A	1.106e^-4	1	DOWNSTREAM CG12439 INTERGENIC
3R	23771772	3R_23771772_SNP [dm3] 3R_27946050_SNP [dm6]	G	A	1.110e^-4	1	INTRON mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	22256581	3L_22256581_SNP [dm3] 3L_22263481_SNP [dm6]	A	C	1.118e^-4	1	UTR_5_PRIME Ddx1 UPSTREAM Rich	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7388456	3L_7388456_INS [dm3] 3L_7395356_INS [dm6]	T	TT	1.130e^-4	1	UPSTREAM CG32379 INTRON CG8563
3L	22623246	3L_22623246_SNP [dm3] 3L_22630146_SNP [dm6]	A	G	1.139e^-4	1	INTRON CG14459
3L	22391631	3L_22391631_SNP [dm3] 3L_22398531_SNP [dm6]	T	C	1.142e^-4	1	INTRON Ten-m	TF binding site BDTNP1_TFBS_da
3L	22382701	3L_22382701_DEL [dm3] 3L_22389601_DEL [dm6]	AA	T	1.145e^-4	1	INTRON Ten-m	TF binding site mE1_TFBS_HSA
3R	18904719	3R_18904719_SNP [dm3] 3R_23078997_SNP [dm6]	A	G	1.152e^-4	1	INTRON CG13830
3L	16737835	3L_16737835_SNP [dm3] 3L_16744735_SNP [dm6]	G	A	1.168e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	23771559	3R_23771559_SNP [dm3] 3R_27945837_SNP [dm6]	G	T	1.177e^-4	1	INTRON mfrn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	22266986	3L_22266986_SNP [dm3] 3L_22273886_SNP [dm6]	G	A	1.180e^-4	1	UPSTREAM srpk79D DOWNSTREAM Csp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	22648996	3L_22648996_SNP [dm3] 3L_22655896_SNP [dm6]	G	C	1.180e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16330140	3L_16330140_SNP [dm3] 3L_16337040_SNP [dm6]	T	C	1.182e^-4	1	INTERGENIC
X	20631571	X_20631571_SNP [dm3] X_20760544_SNP [dm6]	C	A	1.187e^-4	1	DOWNSTREAM CR44710 & 1 other EXON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	14382440	2L_14382440_SNP [dm3] 2L_14382440_SNP [dm6]	T	A	1.192e^-4	1	INTERGENIC
2R	12633600	2R_12633600_SNP [dm3] 2R_16746095_SNP [dm6]	G	T	1.199e^-4	1	UPSTREAM Sfp53D INTRON CG15617	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8197492	3L_8197492_SNP [dm3] 3L_8204392_SNP [dm6]	A	G	1.205e^-4	1	INTERGENIC
3L	8141914	3L_8141914_SNP [dm3] 3L_8148814_SNP [dm6]	G	A	1.208e^-4	1	INTRON CG13676
2R	12586431	2R_12586431_SNP [dm3] 2R_16698926_SNP [dm6]	T	C	1.208e^-4	1	INTRON CG30463	TF binding site mE1_TFBS_HSA
2L	7238270	2L_7238270_SNP [dm3] 2L_7238270_SNP [dm6]	A	G	1.222e^-4	1	INTRON Ndae1
2L	1306898	2L_1306898_SNP [dm3] 2L_1306898_SNP [dm6]	G	T	1.222e^-4	1	INTERGENIC
3L	1609271	3L_1609271_SNP [dm3] 3L_1609271_SNP [dm6]	A	C	1.224e^-4	1	INTRON CG33791 & 1 other
2L	14522817	2L_14522817_INS [dm3] 2L_14522817_INS [dm6]	C	CAAC	1.233e^-4	1	INTERGENIC
X	544008	X_544008_SNP [dm3] X_649975_SNP [dm6]	C	T	1.241e^-4	1	UTR_3_PRIME Hmt4-20	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9904274	3R_9904274_SNP [dm3] 3R_14078552_SNP [dm6]	A	T	1.243e^-4	1	INTRON foxo
2R	1379881	2R_1379881_SNP [dm3] 2R_5492376_SNP [dm6]	G	C	1.254e^-4	1	INTRON CG30440
X	5033505	X_5033505_SNP [dm3] X_5139472_SNP [dm6]	A	G	1.271e^-4	1	INTRON rg & 1 other
3R	22823275	3R_22823275_SNP [dm3] 3R_26997553_SNP [dm6]	A	T	1.286e^-4	1	INTRON RYa-R
3L	9079163	3L_9079163_SNP [dm3] 3L_9086063_SNP [dm6]	C	T	1.286e^-4	1	SYNONYMOUS_CODING Tequila INTRON Tequila
2R	13071632	2R_13071632_DEL [dm3] 2R_17184127_DEL [dm6]	GGGCTCG	G	1.291e^-4	1	UPSTREAM CR44387 INTERGENIC
3L	22193966	3L_22193966_SNP [dm3] 3L_22200866_SNP [dm6]	C	A	1.299e^-4	1	INTRON olf413
3L	22305066	3L_22305066_SNP [dm3] 3L_22311966_SNP [dm6]	A	G	1.299e^-4	1	INTRON Ten-m
2L	7238300	2L_7238300_SNP [dm3] 2L_7238300_SNP [dm6]	C	T	1.300e^-4	1	INTRON Ndae1
X	16756448	X_16756448_SNP [dm3] X_16862415_SNP [dm6]	T	A	1.309e^-4	1	INTRON CG13003
2L	16418144	2L_16418144_SNP [dm3] 2L_16418144_SNP [dm6]	G	A	1.310e^-4	1	UPSTREAM snoRNA:Me28S-A2958 INTRON CG5888
2R	16625458	2R_16625458_DEL [dm3] 2R_20737953_DEL [dm6]	TT	T	1.314e^-4	1	INTRON dpr
3R	15787465	3R_15787465_SNP [dm3] 3R_19961743_SNP [dm6]	T	A	1.318e^-4	1	INTRON Hs6st
2L	7238328	2L_7238328_SNP [dm3] 2L_7238328_SNP [dm6]	T	A	1.320e^-4	1	INTRON Ndae1
2L	16418118	2L_16418118_INS [dm3] 2L_16418118_INS [dm6]	C	TTT	1.325e^-4	1	UPSTREAM snoRNA:Me28S-A2958 INTRON CG5888
3R	23208625	3R_23208625_DEL [dm3] 3R_27382903_DEL [dm6]	GG	G	1.326e^-4	1	INTRON side
3L	22156733	3L_22156733_DEL [dm3] 3L_22163633_DEL [dm6]	ACATTTTCTTTGGCCCACTC...	A	1.327e^-4	1	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20632336	X_20632336_SNP [dm3] X_20761309_SNP [dm6]	C	G	1.328e^-4	1	UTR_3_PRIME shakB UPSTREAM CR43838	TF binding site BDTNP1_TFBS_dl
3R	11990659	3R_11990659_SNP [dm3] 3R_16164937_SNP [dm6]	T	C	1.329e^-4	1	INTRON CG6006
3R	9904287	3R_9904287_SNP [dm3] 3R_14078565_SNP [dm6]	C	T	1.337e^-4	1	INTRON foxo
2L	15388448	2L_15388448_SNP [dm3] 2L_15388448_SNP [dm6]	T	G	1.338e^-4	1	INTERGENIC
3L	22207811	3L_22207811_SNP [dm3] 3L_22214711_SNP [dm6]	A	T	1.340e^-4	1	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22609544	3L_22609544_SNP [dm3] 3L_22616444_SNP [dm6]	T	A	1.348e^-4	1	INTRON CG14459	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17179994	X_17179994_SNP [dm3] X_17285961_SNP [dm6]	T	G	1.350e^-4	1	UTR_3_PRIME Fim INTRON CG5445	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19896649	3R_19896649_SNP [dm3] 3R_24070927_SNP [dm6]	A	C	1.351e^-4	1	INTRON 4EHP	TF binding site mE1_TFBS_cad
3L	2275027	3L_2275027_SNP [dm3] 3L_2275027_SNP [dm6]	G	A	1.369e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	21828234	3R_21828234_SNP [dm3] 3R_26002512_SNP [dm6]	C	T	1.369e^-4	1	DOWNSTREAM CR45037 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	9866269	3L_9866269_INS [dm3] 3L_9873169_INS [dm6]	A	ATTGCCTTAGAG...	1.379e^-4	1	INTERGENIC
3R	7981184	3R_7981184_SNP [dm3] 3R_12155462_SNP [dm6]	T	C	1.387e^-4	1	INTRON dpr15
3L	14725503	3L_14725503_SNP [dm3] 3L_14732403_SNP [dm6]	A	C	1.396e^-4	1	DOWNSTREAM CG13471 INTRON ome
3L	7257598	3L_7257598_DEL [dm3] 3L_7264498_DEL [dm6]	GTTGGTTGTGGTA...	G	1.400e^-4	1	UPSTREAM CG14830 INTERGENIC
X	20631612	X_20631612_DEL [dm3] X_20760585_DEL [dm6]	AAGCGCCTTTCACCAA...	A	1.403e^-4	1	DOWNSTREAM CR44710 & 1 other EXON CR43838	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	6086807	2L_6086807_SNP [dm3] 2L_6086807_SNP [dm6]	A	G	1.407e^-4	1	INTRON Kr-h1
3L	9866272	3L_9866272_SNP [dm3] 3L_9873172_SNP [dm6]	A	T	1.409e^-4	1	INTERGENIC
2L	15080477	2L_15080477_SNP [dm3] 2L_15080477_SNP [dm6]	T	A	1.428e^-4	1	INTRON CG15270
2L	1247893	2L_1247893_SNP [dm3] 2L_1247893_SNP [dm6]	A	T	1.447e^-4	1	INTERGENIC
3L	22160450	3L_22160450_SNP [dm3] 3L_22167350_SNP [dm6]	C	A	1.453e^-4	1	INTRON olf413
3R	18904757	3R_18904757_SNP [dm3] 3R_23079035_SNP [dm6]	T	A	1.455e^-4	1	INTRON CG13830
2L	8888197	2L_8888197_SNP [dm3] 2L_8888197_SNP [dm6]	C	T	1.457e^-4	1	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	16418096	2L_16418096_SNP [dm3] 2L_16418096_SNP [dm6]	T	G	1.460e^-4	1	UPSTREAM snoRNA:Me28S-A2958 INTRON CG5888
X	16914937	X_16914937_SNP [dm3] X_17020904_SNP [dm6]	C	T	1.465e^-4	1	INTRON CG45002
2R	19505830	2R_19505830_SNP [dm3] 2R_23618307_SNP [dm6]	G	T	1.465e^-4	1	INTERGENIC
X	14304522	X_14304522_INS [dm3] X_14410489_INS [dm6]	A	AG	1.474e^-4	1	INTRON dpr8
X	20633024	X_20633024_SNP [dm3] X_20761997_SNP [dm6]	C	T	1.480e^-4	1	UTR_3_PRIME shakB
3L	15748921	3L_15748921_SNP [dm3] 3L_15755821_SNP [dm6]	G	C	1.483e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2363880	3L_2363880_INS [dm3] 3L_2363880_INS [dm6]	C	CGTATATTTAC...	1.498e^-4	1	INTERGENIC
3R	8681879	3R_8681879_SNP [dm3] 3R_12856157_SNP [dm6]	A	G	1.506e^-4	1	SYNONYMOUS_CODING CG10126
2L	6803982	2L_6803982_SNP [dm3] 2L_6803982_SNP [dm6]	G	A	1.517e^-4	1	SYNONYMOUS_CODING CG11236 DOWNSTREAM CG17375	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	7171388	3L_7171388_SNP [dm3] 3L_7178288_SNP [dm6]	A	T	1.520e^-4	1	INTRON Dscam2
2L	10618847	2L_10618847_SNP [dm3] 2L_10618847_SNP [dm6]	T	A	1.526e^-4	1	INTRON Trim9
2R	12836530	2R_12836530_SNP [dm3] 2R_16949025_SNP [dm6]	G	A	1.532e^-4	1	SYNONYMOUS_CODING mute UPSTREAM Vha16-4	TF binding site mE1_TFBS_sens
2R	7908623	2R_7908623_SNP [dm3] 2R_12021118_SNP [dm6]	G	C	1.535e^-4	1	INTERGENIC	enhancer mE1_CBP_Enhancers
2L	3789356	2L_3789356_SNP [dm3] 2L_3789356_SNP [dm6]	T	A	1.536e^-4	1	UPSTREAM CG3921 INTRON CG3921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2125304	3R_2125304_SNP [dm3] 3R_6299582_SNP [dm6]	A	G	1.537e^-4	1	INTRON Osi14
3R	17948990	3R_17948990_SNP [dm3] 3R_22123268_SNP [dm6]	G	C	1.540e^-4	1	INTRON CG42390
3L	9193481	3L_9193481_SNP [dm3] 3L_9200381_SNP [dm6]	G	A	1.543e^-4	1	INTERGENIC
3L	1016119	3L_1016119_SNP [dm3] 3L_1016119_SNP [dm6]	T	C	1.546e^-4	1	INTRON trio
3R	21924759	3R_21924759_SNP [dm3] 3R_26099037_SNP [dm6]	C	A	1.547e^-4	1	UPSTREAM dys INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20632495	X_20632495_INS [dm3] X_20761468_INS [dm6]	T	TCTCGGCTTCAGAAAAAGTT...	1.547e^-4	1	UTR_3_PRIME shakB UPSTREAM CR43838
2R	19438571	2R_19438571_INS [dm3] 2R_23551048_INS [dm6]	G	ATATTATGTTTTATA...	1.552e^-4	1	UTR_5_PRIME pita UPSTREAM Dcp-1 INTRON pita	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	11038885	3L_11038885_SNP [dm3] 3L_11045785_SNP [dm6]	C	T	1.557e^-4	1	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_Trl
2L	1334511	2L_1334511_SNP [dm3] 2L_1334511_SNP [dm6]	T	G	1.568e^-4	1	SYNONYMOUS_CODING CG5440
X	20632945	X_20632945_SNP [dm3] X_20761918_SNP [dm6]	G	A	1.577e^-4	1	UTR_3_PRIME shakB UPSTREAM CR43838
2R	19396871	2R_19396871_SNP [dm3] 2R_23509348_SNP [dm6]	G	C	1.588e^-4	1	INTERGENIC
2L	1834596	2L_1834596_SNP [dm3] 2L_1834596_SNP [dm6]	T	C	1.589e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
X	17207097	X_17207097_SNP [dm3] X_17313064_SNP [dm6]	C	T	1.590e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12842934	2R_12842934_DEL [dm3] 2R_16955429_DEL [dm6]	TAAATATATT	T	1.591e^-4	1	UPSTREAM PIG-V & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20132890	2L_20132890_SNP [dm3] 2L_20132890_SNP [dm6]	A	G	1.607e^-4	1	DOWNSTREAM CG10651 INTERGENIC	TF binding site mE1_TFBS_inv
3L	11867256	3L_11867256_SNP [dm3] 3L_11874156_SNP [dm6]	C	T	1.616e^-4	1	INTRON CG44837
X	20633260	X_20633260_SNP [dm3] X_20762233_SNP [dm6]	T	C	1.628e^-4	1	UTR_3_PRIME shakB
X	20630526	X_20630526_SNP [dm3] X_20759499_SNP [dm6]	C	A	1.631e^-4	1	DOWNSTREAM CR43838 EXON CR44710
2L	8335482	2L_8335482_SNP [dm3] 2L_8335482_SNP [dm6]	C	T	1.634e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
X	20630822	X_20630822_SNP [dm3] X_20759795_SNP [dm6]	C	T	1.639e^-4	1	DOWNSTREAM CR44710 EXON CR43838
2L	17551062	2L_17551062_DEL [dm3] 2L_17551062_DEL [dm6]	TTTCTGAT	T	1.651e^-4	1	INTERGENIC
2R	6528190	2R_6528190_SNP [dm3] 2R_10640685_SNP [dm6]	A	C	1.670e^-4	1	NON_SYNONYMOUS_CODING CG11883 UTR_3_PRIME CG11883
2R	13077741	2R_13077741_SNP [dm3] 2R_17190236_SNP [dm6]	C	G	1.682e^-4	1	DOWNSTREAM CR45323 INTERGENIC
3L	22157569	3L_22157569_SNP [dm3] 3L_22164469_SNP [dm6]	G	C	1.685e^-4	1	INTRON olf413	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16418288	2L_16418288_SNP [dm3] 2L_16418288_SNP [dm6]	G	A	1.697e^-4	1	UPSTREAM snoRNA:Me28S-A2958 INTRON CG5888
2R	16438735	2R_16438735_SNP [dm3] 2R_20551230_SNP [dm6]	G	C	1.714e^-4	1	SYNONYMOUS_CODING CG13430 UTR_3_PRIME CG18065	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2L	13726762	2L_13726762_SNP [dm3] 2L_13726762_SNP [dm6]	T	C	1.718e^-4	1	INTERGENIC
3L	5144454	3L_5144454_SNP [dm3] 3L_5151354_SNP [dm6]	A	G	1.722e^-4	1	SPLICE_SITE_REGION Gen INTRON Gen	TF binding site mE1_TFBS_HSA
2L	13574450	2L_13574450_SNP [dm3] 2L_13574450_SNP [dm6]	T	G	1.723e^-4	1	INTRON kuz
2R	19068827	2R_19068827_INS [dm3] 2R_23181304_INS [dm6]	A	ACATA	1.725e^-4	1	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	20632489	X_20632489_INS [dm3] X_20761462_INS [dm6]	A	ATAAAAATTGTTTTCCCTTG...	1.739e^-4	1	UTR_3_PRIME shakB UPSTREAM CR43838
3R	9923645	3R_9923645_SNP [dm3] 3R_14097923_SNP [dm6]	G	A	1.743e^-4	1	INTRON CG9920
2L	3836757	2L_3836757_SNP [dm3] 2L_3836757_SNP [dm6]	A	G	1.746e^-4	1	UPSTREAM slp2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	1993131	X_1993131_SNP [dm3] X_2099098_SNP [dm6]	A	G	1.751e^-4	1	INTRON csw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5144465	3L_5144465_SNP [dm3] 3L_5151365_SNP [dm6]	A	T	1.753e^-4	1	INTRON Gen	TF binding site mE1_TFBS_HSA
3L	5144495	3L_5144495_SNP [dm3] 3L_5151395_SNP [dm6]	G	C	1.753e^-4	1	INTRON Gen	TF binding site mE1_TFBS_HSA
3L	19330028	3L_19330028_SNP [dm3] 3L_19336928_SNP [dm6]	T	C	1.759e^-4	1	INTRON pip
3R	9904286	3R_9904286_SNP [dm3] 3R_14078564_SNP [dm6]	C	T	1.767e^-4	1	INTRON foxo
2R	15816475	2R_15816475_SNP [dm3] 2R_19928970_SNP [dm6]	G	A	1.787e^-4	1	INTERGENIC
2L	13801038	2L_13801038_SNP [dm3] 2L_13801038_SNP [dm6]	A	C	1.791e^-4	1	INTERGENIC
3L	22242495	3L_22242495_SNP [dm3] 3L_22249395_SNP [dm6]	C	G	1.798e^-4	1	INTERGENIC
2L	13726764	2L_13726764_SNP [dm3] 2L_13726764_SNP [dm6]	G	T	1.801e^-4	1	INTERGENIC
2R	13992124	2R_13992124_SNP [dm3] 2R_18104619_SNP [dm6]	C	T	1.802e^-4	1	SYNONYMOUS_CODING CG5756
X	783428	X_783428_SNP [dm3] X_889395_SNP [dm6]	T	C	1.810e^-4	1	INTRON CG43867
2R	13618086	2R_13618086_SNP [dm3] 2R_17730581_SNP [dm6]	T	A	1.823e^-4	1	INTRON CG4984 & 1 other
3L	1979926	3L_1979926_SNP [dm3] 3L_1979926_SNP [dm6]	C	T	1.828e^-4	1	INTERGENIC
X	14309494	X_14309494_SNP [dm3] X_14415461_SNP [dm6]	G	T	1.835e^-4	1	INTRON dpr8
3L	11038884	3L_11038884_SNP [dm3] 3L_11045784_SNP [dm6]	G	A	1.842e^-4	1	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_Trl
3R	21926874	3R_21926874_SNP [dm3] 3R_26101152_SNP [dm6]	G	T	1.846e^-4	1	INTERGENIC
3L	5695696	3L_5695696_SNP [dm3] 3L_5702596_SNP [dm6]	G	A	1.846e^-4	1	INTRON sif
X	21278657	X_21278657_SNP [dm3] X_21407630_SNP [dm6]	T	G	1.852e^-4	1	INTERGENIC
X	12044161	X_12044161_SNP [dm3] X_12150128_SNP [dm6]	T	G	1.855e^-4	1	INTRON Ten-a
X	20630521	X_20630521_SNP [dm3] X_20759494_SNP [dm6]	T	C	1.868e^-4	1	DOWNSTREAM CR43838 EXON CR44710
3L	5134547	3L_5134547_SNP [dm3] 3L_5141447_SNP [dm6]	C	G	1.869e^-4	1	NON_SYNONYMOUS_CODING CG10672 UPSTREAM CG4623 DOWNSTREAM CHMP2B
2L	3866764	2L_3866764_SNP [dm3] 2L_3866764_SNP [dm6]	T	C	1.870e^-4	1	SYNONYMOUS_CODING CG3964 UPSTREAM Cep97	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11990455	3R_11990455_INS [dm3] 3R_16164733_INS [dm6]	G	GTGG	1.873e^-4	1	INTRON CG6006
3R	23771788	3R_23771788_SNP [dm3] 3R_27946066_SNP [dm6]	C	A	1.876e^-4	1	INTRON mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	1335018	2L_1335018_SNP [dm3] 2L_1335018_SNP [dm6]	T	G	1.886e^-4	1	UTR_3_PRIME CG5440 DOWNSTREAM CG5440
2L	1336442	2L_1336442_SNP [dm3] 2L_1336442_SNP [dm6]	G	A	1.886e^-4	1	DOWNSTREAM CG5440 INTERGENIC
3R	23771737	3R_23771737_SNP [dm3] 3R_27946015_SNP [dm6]	A	T	1.887e^-4	1	INTRON mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	9962071	3R_9962071_SNP [dm3] 3R_14136349_SNP [dm6]	A	T	1.888e^-4	1	INTERGENIC
2R	8979386	2R_8979386_SNP [dm3] 2R_13091881_SNP [dm6]	A	G	1.889e^-4	1	INTERGENIC
3R	26846421	3R_26846421_SNP [dm3] 3R_31020699_SNP [dm6]	T	C	1.889e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3R	26846428	3R_26846428_SNP [dm3] 3R_31020706_SNP [dm6]	A	G	1.889e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	17008742	2R_17008742_SNP [dm3] 2R_21121237_SNP [dm6]	G	A	1.898e^-4	1	DOWNSTREAM CG9394 INTRON ktub	TF binding site mE1_TFBS_cad
3L	7167626	3L_7167626_SNP [dm3] 3L_7174526_SNP [dm6]	T	G	1.908e^-4	1	UTR_3_PRIME Dscam2 INTRON Dscam2
3R	19181150	3R_19181150_SNP [dm3] 3R_23355428_SNP [dm6]	G	C	1.911e^-4	1	SYNONYMOUS_CODING ATPsyn-Cf6 UPSTREAM Sec13 DOWNSTREAM DNApol-epsilon	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	21998515	3R_21998515_SNP [dm3] 3R_26172793_SNP [dm6]	A	G	1.946e^-4	1	INTRON CG31323
2R	17849242	2R_17849242_INS [dm3] 2R_21961737_INS [dm6]	T	TTTA	1.948e^-4	1	INTERGENIC
3R	15344392	3R_15344392_SNP [dm3] 3R_19518670_SNP [dm6]	G	T	1.953e^-4	1	INTRON Dys
3L	1686944	3L_1686944_SNP [dm3] 3L_1686944_SNP [dm6]	G	A	1.955e^-4	1	INTRON CG7991
3R	25199689	3R_25199689_SNP [dm3] 3R_29373967_SNP [dm6]	C	T	1.964e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17781630	2R_17781630_SNP [dm3] 2R_21894125_SNP [dm6]	T	C	1.965e^-4	1	INTRON Fili
2L	7238332	2L_7238332_SNP [dm3] 2L_7238332_SNP [dm6]	A	T	1.976e^-4	1	INTRON Ndae1
X	1989553	X_1989553_SNP [dm3] X_2095520_SNP [dm6]	G	T	1.980e^-4	1	INTRON csw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6803985	2L_6803985_SNP [dm3] 2L_6803985_SNP [dm6]	G	T	1.982e^-4	1	SYNONYMOUS_CODING CG11236 DOWNSTREAM CG17375	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	17083925	2R_17083925_SNP [dm3] 2R_21196420_SNP [dm6]	T	C	1.984e^-4	1	INTRON Lapsyn
2R	12633576	2R_12633576_SNP [dm3] 2R_16746071_SNP [dm6]	A	T	1.984e^-4	1	SYNONYMOUS_CODING CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9487763	2R_9487763_SNP [dm3] 2R_13600258_SNP [dm6]	C	T	1.992e^-4	1	DOWNSTREAM CG43058 INTERGENIC
X	7432761	X_7432761_SNP [dm3] X_7538728_SNP [dm6]	G	A	1.993e^-4	1	INTRON CG32719	TF binding site mE1_TFBS_inv
3L	22334743	3L_22334743_SNP [dm3] 3L_22341643_SNP [dm6]	G	T	2.029e^-4	1	INTRON Ten-m
X	20632741	X_20632741_SNP [dm3] X_20761714_SNP [dm6]	T	A	2.030e^-4	1	UTR_3_PRIME shakB UPSTREAM CR43838
3L	7033210	3L_7033210_SNP [dm3] 3L_7040110_SNP [dm6]	A	C	2.030e^-4	1	INTRON Mp
3R	19809577	3R_19809577_SNP [dm3] 3R_23983855_SNP [dm6]	T	A	2.031e^-4	1	DOWNSTREAM CG31140 EXON CR31451
3L	15017060	3L_15017060_DEL [dm3] 3L_15023960_DEL [dm6]	ATA	A	2.036e^-4	1	UTR_3_PRIME CG32148 INTRON Sytbeta
3L	5144478	3L_5144478_DEL [dm3] 3L_5151378_DEL [dm6]	TTAAAAAT	T	2.037e^-4	1	INTRON Gen	TF binding site mE1_TFBS_HSA
3L	5144487	3L_5144487_DEL [dm3] 3L_5151387_DEL [dm6]	TAATA	T	2.037e^-4	1	INTRON Gen	TF binding site mE1_TFBS_HSA
2L	16874241	2L_16874241_SNP [dm3] 2L_16874241_SNP [dm6]	T	A	2.041e^-4	1	INTRON CR31781
2R	7571907	2R_7571907_SNP [dm3] 2R_11684402_SNP [dm6]	G	A	2.046e^-4	1	UTR_3_PRIME CG13196 INTRON Buffy
2L	1355610	2L_1355610_SNP [dm3] 2L_1355610_SNP [dm6]	G	A	2.049e^-4	1	SYNONYMOUS_CODING CG5565 UPSTREAM CG31924
2L	1355616	2L_1355616_SNP [dm3] 2L_1355616_SNP [dm6]	G	T	2.049e^-4	1	SYNONYMOUS_CODING CG5565 UPSTREAM CG31924
3L	1526967	3L_1526967_SNP [dm3] 3L_1526967_SNP [dm6]	A	T	2.051e^-4	1	INTRON CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	14085830	3L_14085830_SNP [dm3] 3L_14092730_SNP [dm6]	T	C	2.051e^-4	1	INTERGENIC
2R	15266506	2R_15266506_SNP [dm3] 2R_19379001_SNP [dm6]	A	T	2.066e^-4	1	INTRON CG10062
2L	12718259	2L_12718259_SNP [dm3] 2L_12718259_SNP [dm6]	G	A	2.085e^-4	1	UPSTREAM MRP INTRON CG5792	TF binding site mE1_TFBS_Trl
3L	8545597	3L_8545597_SNP [dm3] 3L_8552497_SNP [dm6]	C	G	2.091e^-4	1	INTRON rhea
2R	13872174	2R_13872174_SNP [dm3] 2R_17984669_SNP [dm6]	G	A	2.095e^-4	1	INTRON dpr13
3L	6650340	3L_6650340_SNP [dm3] 3L_6657240_SNP [dm6]	T	C	2.100e^-4	1	INTERGENIC
X	18047972	X_18047972_SNP [dm3] X_18153939_SNP [dm6]	A	T	2.102e^-4	1	INTERGENIC
3R	21303561	3R_21303561_SNP [dm3] 3R_25477839_SNP [dm6]	C	T	2.108e^-4	1	UPSTREAM CG4553 DOWNSTREAM XNP & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_jumu
2R	18271883	2R_18271883_SNP [dm3] 2R_22384378_SNP [dm6]	T	G	2.120e^-4	1	INTRON CG13506	TF binding site mE1_TFBS_Trl
2L	7238258	2L_7238258_SNP [dm3] 2L_7238258_SNP [dm6]	C	T	2.121e^-4	1	INTRON Ndae1
3L	13107355	3L_13107355_SNP [dm3] 3L_13114255_SNP [dm6]	C	T	2.122e^-4	1	UPSTREAM trn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	15966789	2R_15966789_SNP [dm3] 2R_20079284_SNP [dm6]	G	A	2.122e^-4	1	INTERGENIC
2R	15966796	2R_15966796_SNP [dm3] 2R_20079291_SNP [dm6]	T	A	2.122e^-4	1	INTERGENIC
3L	11521090	3L_11521090_SNP [dm3] 3L_11527990_SNP [dm6]	A	G	2.132e^-4	1	INTRON Mob2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	7238367	2L_7238367_SNP [dm3] 2L_7238367_SNP [dm6]	T	A	2.137e^-4	1	INTRON Ndae1
X	20632462	X_20632462_SNP [dm3] X_20761435_SNP [dm6]	A	C	2.137e^-4	1	UTR_3_PRIME shakB UPSTREAM CR43838
3L	9310689	3L_9310689_SNP [dm3] 3L_9317589_SNP [dm6]	G	A	2.148e^-4	1	INTERGENIC
3R	21926822	3R_21926822_SNP [dm3] 3R_26101100_SNP [dm6]	G	A	2.153e^-4	1	INTERGENIC
3R	23771742	3R_23771742_SNP [dm3] 3R_27946020_SNP [dm6]	A	T	2.162e^-4	1	INTRON mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	12049778	3L_12049778_SNP [dm3] 3L_12056678_SNP [dm6]	G	A	2.163e^-4	1	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	781919	X_781919_SNP [dm3] X_887886_SNP [dm6]	T	A	2.168e^-4	1	INTRON CG43867
3R	21910770	3R_21910770_SNP [dm3] 3R_26085048_SNP [dm6]	G	A	2.169e^-4	1	INTRON dys	TF binding site mE1_TFBS_HSA
3L	14373169	3L_14373169_SNP [dm3] 3L_14380069_SNP [dm6]	T	C	2.182e^-4	1	INTERGENIC
3L	14725678	3L_14725678_SNP [dm3] 3L_14732578_SNP [dm6]	G	A	2.184e^-4	1	DOWNSTREAM CG13471 INTRON ome
X	5597580	X_5597580_SNP [dm3] X_5703547_SNP [dm6]	T	C	2.192e^-4	1	SYNONYMOUS_CODING CG4096	TF binding site mE1_TFBS_chinmo
2L	14609434	2L_14609434_SNP [dm3] 2L_14609434_SNP [dm6]	C	A	2.200e^-4	1	INTRON osp
4	764114	4_764114_SNP [dm3] 4_743488_SNP [dm6]	C	T	2.203e^-4	1	INTRON bt
X	10078800	X_10078800_SNP [dm3] X_10184767_SNP [dm6]	C	T	2.210e^-4	1	INTRON CG43902 & 1 other
2R	5449502	2R_5449502_INS [dm3] 2R_9561997_INS [dm6]	G	GGTAATG	2.213e^-4	1	DOWNSTREAM Or45b INTRON CG1809 EXON CR45281
2R	18283909	2R_18283909_SNP [dm3] 2R_22396404_SNP [dm6]	C	T	2.222e^-4	1	INTRON babos
2R	17667438	2R_17667438_SNP [dm3] 2R_21779933_SNP [dm6]	G	A	2.229e^-4	1	INTERGENIC
X	7433879	X_7433879_SNP [dm3] X_7539846_SNP [dm6]	A	C	2.236e^-4	1	INTRON CG32719
3L	11029200	3L_11029200_SNP [dm3] 3L_11036100_SNP [dm6]	G	A	2.240e^-4	1	DOWNSTREAM CG43693 & 1 other INTERGENIC
3L	11686885	3L_11686885_SNP [dm3] 3L_11693785_SNP [dm6]	C	G	2.252e^-4	1	DOWNSTREAM CG11652 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22172375	3L_22172375_SNP [dm3] 3L_22179275_SNP [dm6]	A	T	2.260e^-4	1	INTRON olf413	TF binding site BDTNP1_TFBS_da
3L	22253300	3L_22253300_SNP [dm3] 3L_22260200_SNP [dm6]	C	A	2.260e^-4	1	NON_SYNONYMOUS_CODING Rich
2R	18062834	2R_18062834_SNP [dm3] 2R_22175329_SNP [dm6]	G	A	2.264e^-4	1	UPSTREAM CG3045 INTRON CG6758 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	18271893	2R_18271893_SNP [dm3] 2R_22384388_SNP [dm6]	A	G	2.273e^-4	1	INTRON CG13506	TF binding site mE1_TFBS_Trl
3L	9507832	3L_9507832_SNP [dm3] 3L_9514732_SNP [dm6]	C	T	2.274e^-4	1	NON_SYNONYMOUS_CODING CG33700 UPSTREAM CR33701
2L	3482845	2L_3482845_SNP [dm3] 2L_3482845_SNP [dm6]	T	A	2.275e^-4	1	INTRON CG15414
X	4434811	X_4434811_SNP [dm3] X_4540778_SNP [dm6]	G	T	2.275e^-4	1	UPSTREAM CHOp24 & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
X	5574159	X_5574159_SNP [dm3] X_5680126_SNP [dm6]	T	C	2.283e^-4	1	UPSTREAM Gr5a & 1 other DOWNSTREAM CR44958 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	5520532	3L_5520532_SNP [dm3] 3L_5527432_SNP [dm6]	G	A	2.284e^-4	1	INTRON Lkr
3L	7387968	3L_7387968_SNP [dm3] 3L_7394868_SNP [dm6]	C	T	2.290e^-4	1	INTRON CG8563
3R	12837460	3R_12837460_SNP [dm3] 3R_17011738_SNP [dm6]	C	T	2.292e^-4	1	SYNONYMOUS_CODING CG8907	TF binding site mE1_TFBS_cad
3R	9955331	3R_9955331_SNP [dm3] 3R_14129609_SNP [dm6]	C	T	2.295e^-4	1	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	16756422	X_16756422_SNP [dm3] X_16862389_SNP [dm6]	C	T	2.302e^-4	1	INTRON CG13003
2R	15394335	2R_15394335_SNP [dm3] 2R_19506830_SNP [dm6]	C	A	2.319e^-4	1	UPSTREAM tRNA:H:56E INTERGENIC
3L	22158246	3L_22158246_SNP [dm3] 3L_22165146_SNP [dm6]	G	A	2.319e^-4	1	INTRON olf413	TF binding site mE1_TFBS_Kr mE1_TFBS_sens
X	601759	X_601759_SNP [dm3] X_707726_SNP [dm6]	T	G	2.338e^-4	1	INTRON sdk
2R	19400635	2R_19400635_SNP [dm3] 2R_23513112_SNP [dm6]	G	A	2.344e^-4	1	UPSTREAM CG3906 INTERGENIC
X	17672076	X_17672076_SNP [dm3] X_17778043_SNP [dm6]	A	T	2.354e^-4	1	UTR_3_PRIME unc-4	TF binding site mE1_TFBS_chinmo
3R	15344128	3R_15344128_SNP [dm3] 3R_19518406_SNP [dm6]	G	T	2.372e^-4	1	INTRON Dys
3L	9866275	3L_9866275_SNP [dm3] 3L_9873175_SNP [dm6]	A	T	2.402e^-4	1	INTERGENIC
3R	9733058	3R_9733058_SNP [dm3] 3R_13907336_SNP [dm6]	C	G	2.403e^-4	1	INTERGENIC
3R	11110205	3R_11110205_SNP [dm3] 3R_15284483_SNP [dm6]	G	T	2.411e^-4	1	INTRON Tm1
3R	25210808	3R_25210808_INS [dm3] 3R_29385086_INS [dm6]	C	CACC	2.419e^-4	1	INTRON Ptp99A
3R	21926821	3R_21926821_SNP [dm3] 3R_26101099_SNP [dm6]	T	C	2.428e^-4	1	INTERGENIC
2R	12599899	2R_12599899_SNP [dm3] 2R_16712394_SNP [dm6]	G	C	2.428e^-4	1	INTRON CG30463
2L	7964470	2L_7964470_SNP [dm3] 2L_7964470_SNP [dm6]	T	G	2.438e^-4	1	INTRON Snoo	TF binding site mE1_TFBS_inv
3L	22597542	3L_22597542_SNP [dm3] 3L_22604442_SNP [dm6]	G	A	2.451e^-4	1	INTRON CG14459
X	20632480	X_20632480_SNP [dm3] X_20761453_SNP [dm6]	T	C	2.452e^-4	1	UTR_3_PRIME shakB UPSTREAM CR43838
X	20633215	X_20633215_SNP [dm3] X_20762188_SNP [dm6]	T	C	2.456e^-4	1	UTR_3_PRIME shakB
X	20632544	X_20632544_SNP [dm3] X_20761517_SNP [dm6]	G	A	2.457e^-4	1	UTR_3_PRIME shakB UPSTREAM CR43838
3R	9916115	3R_9916115_DEL [dm3] 3R_14090393_DEL [dm6]	GCTCTAA	G	2.459e^-4	1	UPSTREAM Npc2b INTRON Npc2b
2R	12053944	2R_12053944_SNP [dm3] 2R_16166439_SNP [dm6]	T	C	2.464e^-4	1	SYNONYMOUS_CODING lbk	TF binding site mE1_TFBS_cad
3L	9007454	3L_9007454_SNP [dm3] 3L_9014354_SNP [dm6]	A	G	2.469e^-4	1	INTRON Doc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	781695	X_781695_SNP [dm3] X_887662_SNP [dm6]	G	A	2.475e^-4	1	INTRON CG43867
3L	18163406	3L_18163406_SNP [dm3] 3L_18170306_SNP [dm6]	C	T	2.478e^-4	1	INTRON W	TF binding site mE1_TFBS_HSA
3L	16737720	3L_16737720_SNP [dm3] 3L_16744620_SNP [dm6]	C	A	2.487e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	16318389	2L_16318389_SNP [dm3] 2L_16318389_SNP [dm6]	C	T	2.487e^-4	1	INTRON cact	TF binding site BDTNP1_TFBS_twi
3L	18568985	3L_18568985_SNP [dm3] 3L_18575885_SNP [dm6]	A	G	2.489e^-4	1	UTR_3_PRIME AstC-R1
3R	9961959	3R_9961959_SNP [dm3] 3R_14136237_SNP [dm6]	G	A	2.499e^-4	1	INTERGENIC
3R	9961965	3R_9961965_SNP [dm3] 3R_14136243_SNP [dm6]	A	G	2.499e^-4	1	INTERGENIC
2L	17551056	2L_17551056_MNP [dm3] 2L_17551056_MNP [dm6]	TAT	CGG	2.500e^-4	1	INTERGENIC
3L	14162838	3L_14162838_SNP [dm3] 3L_14169738_SNP [dm6]	A	G	2.502e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	22186322	3L_22186322_SNP [dm3] 3L_22193222_SNP [dm6]	C	T	2.505e^-4	1	INTRON olf413	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24925989	3R_24925989_SNP [dm3] 3R_29100267_SNP [dm6]	A	G	2.515e^-4	1	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17825174	2L_17825174_SNP [dm3] 2L_17825174_SNP [dm6]	G	A	2.518e^-4	1	INTRON CadN2
2R	19575501	2R_19575501_SNP [dm3] 2R_23687978_SNP [dm6]	C	T	2.520e^-4	1	UTR_3_PRIME St3 UPSTREAM Pal2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15775837	2R_15775837_SNP [dm3] 2R_19888332_SNP [dm6]	A	T	2.556e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	1860745	3R_1860745_SNP [dm3] 3R_6035023_SNP [dm6]	C	G	2.556e^-4	1	INTERGENIC
2R	19374793	2R_19374793_SNP [dm3] 2R_23487270_SNP [dm6]	G	C	2.565e^-4	1	INTRON CG43795
3L	9398980	3L_9398980_SNP [dm3] 3L_9405880_SNP [dm6]	C	T	2.567e^-4	1	SYNONYMOUS_CODING Cpr67B DOWNSTREAM CG4022
3L	488579	3L_488579_SNP [dm3] 3L_488579_SNP [dm6]	A	T	2.573e^-4	1	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3R	14613127	3R_14613127_SNP [dm3] 3R_18787405_SNP [dm6]	C	A	2.588e^-4	1	INTRON CG7720
X	20632493	X_20632493_INS [dm3] X_20761466_INS [dm6]	A	ATTCTCGGCTTCAGAAAAAG...	2.609e^-4	1	UTR_3_PRIME shakB UPSTREAM CR43838
3L	16742382	3L_16742382_SNP [dm3] 3L_16749282_SNP [dm6]	G	T	2.616e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
X	20631299	X_20631299_SNP [dm3] X_20760272_SNP [dm6]	C	T	2.621e^-4	1	DOWNSTREAM CR44710 & 1 other INTRON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	13687540	2L_13687540_SNP [dm3] 2L_13687540_SNP [dm6]	G	A	2.650e^-4	1	SYNONYMOUS_CODING CG31814
3R	2470483	3R_2470483_SNP [dm3] 3R_6644761_SNP [dm6]	A	T	2.666e^-4	1	UPSTREAM CG1315 INTERGENIC
X	1684623	X_1684623_SNP [dm3] X_1790590_SNP [dm6]	C	T	2.675e^-4	1	DOWNSTREAM CG32806 INTRON CG42666
2R	15839143	2R_15839143_SNP [dm3] 2R_19951638_SNP [dm6]	G	A	2.677e^-4	1	SYNONYMOUS_CODING CG10822
X	1684231	X_1684231_SNP [dm3] X_1790198_SNP [dm6]	T	C	2.679e^-4	1	SYNONYMOUS_CODING CG32806 INTRON CG42666
X	22146220	X_22146220_SNP [dm3] X_22744384_SNP [dm6]	C	T	2.680e^-4	1	INTRON CR44997	transposable element FlyBase
3R	25158666	3R_25158666_SNP [dm3] 3R_29332944_SNP [dm6]	G	A	2.714e^-4	1	INTERGENIC
3R	7754207	3R_7754207_SNP [dm3] 3R_11928485_SNP [dm6]	A	G	2.714e^-4	1	INTRON Cad87A
3R	7754256	3R_7754256_SNP [dm3] 3R_11928534_SNP [dm6]	A	G	2.714e^-4	1	INTRON Cad87A
3R	19674405	3R_19674405_SNP [dm3] 3R_23848683_SNP [dm6]	A	C	2.721e^-4	1	SYNONYMOUS_CODING CG34355	TF binding site mE1_TFBS_cad
X	9331544	X_9331544_SNP [dm3] X_9437511_SNP [dm6]	C	T	2.729e^-4	1	INTRON mgl
X	22146287	X_22146287_SNP [dm3] X_22744451_SNP [dm6]	A	G	2.730e^-4	1	INTRON CR44997	transposable element FlyBase
X	15581012	X_15581012_SNP [dm3] X_15686979_SNP [dm6]	C	T	2.735e^-4	1	INTRON CG15599	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	26846429	3R_26846429_SNP [dm3] 3R_31020707_SNP [dm6]	G	A	2.742e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3R	19809341	3R_19809341_SNP [dm3] 3R_23983619_SNP [dm6]	C	T	2.743e^-4	1	DOWNSTREAM CG31140 EXON CR31451
3R	18169656	3R_18169656_SNP [dm3] 3R_22343934_SNP [dm6]	C	G	2.744e^-4	1	INTERGENIC
3L	8795856	3L_8795856_SNP [dm3] 3L_8802756_SNP [dm6]	T	A	2.754e^-4	1	NON_SYNONYMOUS_CODING CG34426 UPSTREAM CG13311 DOWNSTREAM CG32023	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8770469	3L_8770469_SNP [dm3] 3L_8777369_SNP [dm6]	A	C	2.754e^-4	1	INTRON Fhos
2R	8429759	2R_8429759_SNP [dm3] 2R_12542254_SNP [dm6]	G	A	2.755e^-4	1	INTRON fra
3R	9730560	3R_9730560_SNP [dm3] 3R_13904838_SNP [dm6]	T	C	2.767e^-4	1	DOWNSTREAM ems INTERGENIC
3R	24375138	3R_24375138_SNP [dm3] 3R_28549416_SNP [dm6]	A	T	2.769e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2416414	3L_2416414_SNP [dm3] 3L_2416414_SNP [dm6]	C	T	2.772e^-4	1	INTRON CG45186
2L	6810895	2L_6810895_DEL [dm3] 2L_6810895_DEL [dm6]	TCA	T	2.775e^-4	1	INTERGENIC
3R	19809350	3R_19809350_SNP [dm3] 3R_23983628_SNP [dm6]	C	A	2.781e^-4	1	DOWNSTREAM CG31140 EXON CR31451
3L	7385717	3L_7385717_SNP [dm3] 3L_7392617_SNP [dm6]	C	T	2.783e^-4	1	INTRON CG8563
3R	11990452	3R_11990452_SNP [dm3] 3R_16164730_SNP [dm6]	A	G	2.797e^-4	1	INTRON CG6006
2L	13724824	2L_13724824_SNP [dm3] 2L_13724824_SNP [dm6]	C	A	2.811e^-4	1	INTERGENIC
2L	746755	2L_746755_SNP [dm3] 2L_746755_SNP [dm6]	A	G	2.813e^-4	1	INTERGENIC
3L	22284679	3L_22284679_SNP [dm3] 3L_22291579_SNP [dm6]	C	T	2.815e^-4	1	NON_SYNONYMOUS_CODING Aats-ile
2R	15963243	2R_15963243_SNP [dm3] 2R_20075738_SNP [dm6]	A	T	2.820e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3L	1609291	3L_1609291_SNP [dm3] 3L_1609291_SNP [dm6]	C	T	2.837e^-4	1	INTRON CG33791 & 1 other
X	14130865	X_14130865_SNP [dm3] X_14236832_SNP [dm6]	G	A	2.847e^-4	1	INTRON Fbxl4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14085795	3L_14085795_SNP [dm3] 3L_14092695_SNP [dm6]	G	A	2.854e^-4	1	INTERGENIC
3L	14373161	3L_14373161_SNP [dm3] 3L_14380061_SNP [dm6]	C	G	2.856e^-4	1	INTERGENIC
X	9421014	X_9421014_SNP [dm3] X_9526981_SNP [dm6]	C	T	2.863e^-4	1	INTRON CG32700
X	20631672	X_20631672_SNP [dm3] X_20760645_SNP [dm6]	A	G	2.866e^-4	1	DOWNSTREAM shakB EXON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	22156754	3L_22156754_INS [dm3] 3L_22163654_INS [dm6]	G	GGGA	2.866e^-4	1	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12844769	2R_12844769_SNP [dm3] 2R_16957264_SNP [dm6]	T	C	2.867e^-4	1	UTR_3_PRIME PIG-V UPSTREAM CG6665	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sbb
3R	22895123	3R_22895123_SNP [dm3] 3R_27069401_SNP [dm6]	C	G	2.876e^-4	1	UTR_5_PRIME spz	TF binding site BDTNP1_TFBS_dl
3L	15605024	3L_15605024_SNP [dm3] 3L_15611924_SNP [dm6]	A	G	2.880e^-4	1	NON_SYNONYMOUS_CODING CG13449 UPSTREAM CG13449
2R	19262589	2R_19262589_SNP [dm3] 2R_23375066_SNP [dm6]	C	T	2.885e^-4	1	SYNONYMOUS_CODING Golgin245	TF binding site mE1_TFBS_cad
2L	9078594	2L_9078594_SNP [dm3] 2L_9078594_SNP [dm6]	A	C	2.886e^-4	1	DOWNSTREAM CG12439 INTERGENIC
2L	13746406	2L_13746406_SNP [dm3] 2L_13746406_SNP [dm6]	G	C	2.899e^-4	1	UPSTREAM TM9SF4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	7386834	3L_7386834_SNP [dm3] 3L_7393734_SNP [dm6]	A	G	2.899e^-4	1	SYNONYMOUS_CODING CG8563	TF binding site mE1_TFBS_cad
2L	10169115	2L_10169115_SNP [dm3] 2L_10169115_SNP [dm6]	G	C	2.903e^-4	1	INTRON CG44153
3R	13923948	3R_13923948_SNP [dm3] 3R_18098226_SNP [dm6]	A	C	2.904e^-4	1	INTRON sr
2R	15966024	2R_15966024_SNP [dm3] 2R_20078519_SNP [dm6]	T	A	2.909e^-4	1	INTERGENIC
2L	10106407	2L_10106407_SNP [dm3] 2L_10106407_SNP [dm6]	C	T	2.909e^-4	1	INTRON CG44153 & 1 other
3R	18896522	3R_18896522_SNP [dm3] 3R_23070800_SNP [dm6]	A	G	2.913e^-4	1	UTR_3_PRIME CG13830
2L	8335003	2L_8335003_SNP [dm3] 2L_8335003_SNP [dm6]	C	T	2.915e^-4	1	INTERGENIC
3L	22202149	3L_22202149_SNP [dm3] 3L_22209049_SNP [dm6]	G	A	2.918e^-4	1	INTRON olf413
3L	17141446	3L_17141446_SNP [dm3] 3L_17148346_SNP [dm6]	G	A	2.929e^-4	1	UPSTREAM Rbp6 INTRON Rbp6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	20634125	X_20634125_SNP [dm3] X_20763098_SNP [dm6]	T	C	2.938e^-4	1	UTR_3_PRIME shakB
3R	2116680	3R_2116680_SNP [dm3] 3R_6290958_SNP [dm6]	G	C	2.940e^-4	1	UPSTREAM Osi13 INTERGENIC
3L	8604650	3L_8604650_SNP [dm3] 3L_8611550_SNP [dm6]	G	A	2.943e^-4	1	INTRON CG6282
3R	9961912	3R_9961912_SNP [dm3] 3R_14136190_SNP [dm6]	G	A	2.951e^-4	1	INTERGENIC
X	555435	X_555435_SNP [dm3] X_661402_SNP [dm6]	G	A	2.959e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1979928	3L_1979928_SNP [dm3] 3L_1979928_SNP [dm6]	G	T	2.977e^-4	1	INTERGENIC
2L	3720935	2L_3720935_SNP [dm3] 2L_3720935_SNP [dm6]	G	A	2.985e^-4	1	UPSTREAM Shaw INTRON Shaw
3L	7518553	3L_7518553_SNP [dm3] 3L_7525453_SNP [dm6]	C	T	2.999e^-4	1	SYNONYMOUS_CODING ltl
3L	7518562	3L_7518562_SNP [dm3] 3L_7525462_SNP [dm6]	G	A	2.999e^-4	1	SYNONYMOUS_CODING ltl
2R	18063006	2R_18063006_SNP [dm3] 2R_22175501_SNP [dm6]	A	C	3.003e^-4	1	SYNONYMOUS_CODING CG6758 UPSTREAM CG3045 EXON CR45151	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	18749954	2L_18749954_SNP [dm3] 2L_18749954_SNP [dm6]	T	C	3.013e^-4	1	INTERGENIC
X	17172631	X_17172631_SNP [dm3] X_17278598_SNP [dm6]	T	G	3.015e^-4	1	UPSTREAM f INTRON f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20631460	X_20631460_SNP [dm3] X_20760433_SNP [dm6]	A	G	3.022e^-4	1	DOWNSTREAM CR44710 & 1 other EXON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	3419489	2L_3419489_SNP [dm3] 2L_3419489_SNP [dm6]	C	T	3.027e^-4	1	INTRON pgant2
3R	6572850	3R_6572850_SNP [dm3] 3R_10747128_SNP [dm6]	G	C	3.028e^-4	1	INTRON TkR86C
2L	7252498	2L_7252498_SNP [dm3] 2L_7252498_SNP [dm6]	C	T	3.031e^-4	1	NON_SYNONYMOUS_CODING CG13786
3R	18905568	3R_18905568_SNP [dm3] 3R_23079846_SNP [dm6]	C	A	3.040e^-4	1	INTRON CG13830
2L	1785100	2L_1785100_SNP [dm3] 2L_1785100_SNP [dm6]	T	A	3.046e^-4	1	INTRON Gr22e
X	2818502	X_2818502_SNP [dm3] X_2924469_SNP [dm6]	G	C	3.047e^-4	1	DOWNSTREAM CG3588 INTRON kirre
2R	19400980	2R_19400980_SNP [dm3] 2R_23513457_SNP [dm6]	T	A	3.048e^-4	1	INTERGENIC
X	18580422	X_18580422_SNP [dm3] X_18686389_SNP [dm6]	T	C	3.050e^-4	1	INTRON phm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	22388447	3L_22388447_SNP [dm3] 3L_22395347_SNP [dm6]	A	G	3.051e^-4	1	INTRON Ten-m	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	4065018	X_4065018_SNP [dm3] X_4170985_SNP [dm6]	A	G	3.054e^-4	1	INTRON Fas2	TF binding site mE1_TFBS_inv
2L	1632663	2L_1632663_SNP [dm3] 2L_1632663_SNP [dm6]	G	T	3.055e^-4	1	INTERGENIC
2R	16370154	2R_16370154_SNP [dm3] 2R_20482649_SNP [dm6]	G	A	3.057e^-4	1	INTERGENIC
3L	23080222	3L_23080222_SNP [dm3] 3L_23087122_SNP [dm6]	A	G	3.061e^-4	1	INTERGENIC	transposable element FlyBase
2L	16256585	2L_16256585_SNP [dm3] 2L_16256585_SNP [dm6]	C	A	3.066e^-4	1	UPSTREAM PRL-1 INTRON PRL-1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
2R	12633477	2R_12633477_SNP [dm3] 2R_16745972_SNP [dm6]	G	A	3.070e^-4	1	SYNONYMOUS_CODING CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9916122	3R_9916122_INS [dm3] 3R_14090400_INS [dm6]	G	GACGTAC	3.087e^-4	1	UPSTREAM Npc2b INTRON Npc2b
2L	11317732	2L_11317732_SNP [dm3] 2L_11317732_SNP [dm6]	G	A	3.095e^-4	1	INTERGENIC
2R	15829001	2R_15829001_SNP [dm3] 2R_19941496_SNP [dm6]	C	T	3.096e^-4	1	UPSTREAM CR43421 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	22270205	3L_22270205_SNP [dm3] 3L_22277105_SNP [dm6]	C	A	3.120e^-4	1	UPSTREAM srpk79D INTRON srpk79D	TF binding site mE1_TFBS_cad
X	20634188	X_20634188_SNP [dm3] X_20763161_SNP [dm6]	C	T	3.122e^-4	1	UTR_3_PRIME shakB
3L	15017065	3L_15017065_SNP [dm3] 3L_15023965_SNP [dm6]	A	C	3.146e^-4	1	UTR_3_PRIME CG32148 INTRON Sytbeta
X	14309398	X_14309398_SNP [dm3] X_14415365_SNP [dm6]	G	A	3.153e^-4	1	INTRON dpr8
X	1426687	X_1426687_SNP [dm3] X_1532654_SNP [dm6]	T	C	3.161e^-4	1	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
3L	4519150	3L_4519150_SNP [dm3] 3L_4519150_SNP [dm6]	A	C	3.163e^-4	1	INTRON Tie
3L	4519154	3L_4519154_SNP [dm3] 3L_4519154_SNP [dm6]	A	T	3.163e^-4	1	INTRON Tie
3L	11686917	3L_11686917_DEL [dm3] 3L_11693817_DEL [dm6]	TATTT	T	3.164e^-4	1	DOWNSTREAM CG11652 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20632097	X_20632097_SNP [dm3] X_20761070_SNP [dm6]	G	A	3.165e^-4	1	UPSTREAM CR43838 DOWNSTREAM shakB INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	9961938	3R_9961938_SNP [dm3] 3R_14136216_SNP [dm6]	G	A	3.167e^-4	1	INTERGENIC
3R	22876855	3R_22876855_SNP [dm3] 3R_27051133_SNP [dm6]	A	G	3.167e^-4	1	DOWNSTREAM TwdlT INTRON RYa-R
3L	22556712	3L_22556712_SNP [dm3] 3L_22563612_SNP [dm6]	G	C	3.172e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22604628	3L_22604628_SNP [dm3] 3L_22611528_SNP [dm6]	G	A	3.172e^-4	1	INTRON CG14459
3L	22624695	3L_22624695_SNP [dm3] 3L_22631595_SNP [dm6]	G	A	3.172e^-4	1	INTRON CG14459
2L	16430701	2L_16430701_SNP [dm3] 2L_16430701_SNP [dm6]	G	A	3.184e^-4	1	INTRON CG5888
3L	23117189	3L_23117189_SNP [dm3] 3L_23124089_SNP [dm6]	A	C	3.187e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3L	7660679	3L_7660679_SNP [dm3] 3L_7667579_SNP [dm6]	T	C	3.205e^-4	1	NON_SYNONYMOUS_CODING Ank2 INTRON CG32373 & 2 others
3L	16894394	3L_16894394_SNP [dm3] 3L_16901294_SNP [dm6]	T	C	3.206e^-4	1	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21914685	3R_21914685_SNP [dm3] 3R_26088963_SNP [dm6]	A	G	3.215e^-4	1	INTRON dys	regulatory region REDfly_CRMs
X	20631938	X_20631938_SNP [dm3] X_20760911_SNP [dm6]	A	G	3.219e^-4	1	DOWNSTREAM shakB EXON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	5837819	2R_5837819_SNP [dm3] 2R_9950314_SNP [dm6]	T	C	3.220e^-4	1	INTRON Mef2
3L	14721923	3L_14721923_SNP [dm3] 3L_14728823_SNP [dm6]	G	T	3.220e^-4	1	UTR_5_PRIME CG13473 INTRON ome
2R	10730564	2R_10730564_SNP [dm3] 2R_14843059_SNP [dm6]	A	T	3.228e^-4	1	UTR_3_PRIME NaPi-T DOWNSTREAM NaPi-T
X	18786781	X_18786781_SNP [dm3] X_18892748_SNP [dm6]	C	T	3.231e^-4	1	INTRON CG7358	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6737922	2L_6737922_SNP [dm3] 2L_6737922_SNP [dm6]	T	C	3.250e^-4	1	SYNONYMOUS_CODING TTLL3A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25010837	3R_25010837_SNP [dm3] 3R_29185115_SNP [dm6]	T	A	3.253e^-4	1	INTRON CG14509
3L	22720993	3L_22720993_SNP [dm3] 3L_22727893_SNP [dm6]	G	A	3.261e^-4	1	UPSTREAM CG11367 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	14979346	3R_14979346_SNP [dm3] 3R_19153624_SNP [dm6]	A	T	3.263e^-4	1	UTR_5_PRIME CG5835 DOWNSTREAM CG11779	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	6568199	2L_6568199_SNP [dm3] 2L_6568199_SNP [dm6]	G	A	3.266e^-4	1	DOWNSTREAM CG11319 INTERGENIC
2L	16418305	2L_16418305_SNP [dm3] 2L_16418305_SNP [dm6]	G	A	3.278e^-4	1	UPSTREAM snoRNA:Me28S-A2958 INTRON CG5888
3L	22355330	3L_22355330_SNP [dm3] 3L_22362230_SNP [dm6]	T	A	3.285e^-4	1	INTRON Ten-m
2L	8335193	2L_8335193_SNP [dm3] 2L_8335193_SNP [dm6]	C	G	3.287e^-4	1	INTERGENIC
2R	7596202	2R_7596202_SNP [dm3] 2R_11708697_SNP [dm6]	T	A	3.292e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	7146042	3L_7146042_SNP [dm3] 3L_7152942_SNP [dm6]	A	G	3.302e^-4	1	INTRON corn
2L	13105362	2L_13105362_SNP [dm3] 2L_13105362_SNP [dm6]	C	G	3.304e^-4	1	DOWNSTREAM CR45461 INTERGENIC
X	20630785	X_20630785_SNP [dm3] X_20759758_SNP [dm6]	A	T	3.311e^-4	1	DOWNSTREAM CR44710 EXON CR43838
X	20630786	X_20630786_SNP [dm3] X_20759759_SNP [dm6]	T	A	3.311e^-4	1	DOWNSTREAM CR44710 EXON CR43838
2L	6947708	2L_6947708_SNP [dm3] 2L_6947708_SNP [dm6]	T	G	3.315e^-4	1	SYNONYMOUS_CODING ihog	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14641380	3L_14641380_SNP [dm3] 3L_14648280_SNP [dm6]	C	A	3.315e^-4	1	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	1340464	2L_1340464_SNP [dm3] 2L_1340464_SNP [dm6]	A	C	3.323e^-4	1	DOWNSTREAM CG33923 INTERGENIC
2R	12982769	2R_12982769_SNP [dm3] 2R_17095264_SNP [dm6]	C	T	3.329e^-4	1	INTRON GstS1	TF binding site mE1_TFBS_cad
3R	18904681	3R_18904681_SNP [dm3] 3R_23078959_SNP [dm6]	G	T	3.338e^-4	1	INTRON CG13830
3R	18904692	3R_18904692_SNP [dm3] 3R_23078970_SNP [dm6]	G	T	3.338e^-4	1	INTRON CG13830
3L	8770458	3L_8770458_SNP [dm3] 3L_8777358_SNP [dm6]	A	T	3.342e^-4	1	INTRON Fhos
3L	14994576	3L_14994576_SNP [dm3] 3L_15001476_SNP [dm6]	G	C	3.346e^-4	1	UTR_3_PRIME Reck DOWNSTREAM Prosbeta2
2L	16414354	2L_16414354_SNP [dm3] 2L_16414354_SNP [dm6]	C	T	3.348e^-4	1	INTRON CG5888	TF binding site BDTNP1_TFBS_twi
X	20631871	X_20631871_SNP [dm3] X_20760844_SNP [dm6]	A	G	3.356e^-4	1	DOWNSTREAM shakB EXON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	8679925	3L_8679925_SNP [dm3] 3L_8686825_SNP [dm6]	C	A	3.363e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd
2L	5241215	2L_5241215_SNP [dm3] 2L_5241215_SNP [dm6]	G	A	3.366e^-4	1	UPSTREAM tRNA:CR31914 DOWNSTREAM tRNA:CR31971 INTRON tkv
X	20631013	X_20631013_INS [dm3] X_20759986_INS [dm6]	A	AGA	3.370e^-4	1	DOWNSTREAM CR44710 EXON CR43838	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	9625451	3L_9625451_SNP [dm3] 3L_9632351_SNP [dm6]	A	T	3.371e^-4	1	SYNONYMOUS_CODING fry DOWNSTREAM CG8336	TF binding site mE1_TFBS_cad
2L	1632685	2L_1632685_SNP [dm3] 2L_1632685_SNP [dm6]	C	A	3.377e^-4	1	INTERGENIC
X	1989567	X_1989567_SNP [dm3] X_2095534_SNP [dm6]	A	G	3.379e^-4	1	INTRON csw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13105366	2L_13105366_SNP [dm3] 2L_13105366_SNP [dm6]	T	C	3.386e^-4	1	DOWNSTREAM CR45461 INTERGENIC
X	20632096	X_20632096_SNP [dm3] X_20761069_SNP [dm6]	G	A	3.389e^-4	1	UPSTREAM CR43838 DOWNSTREAM shakB INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	18561124	3L_18561124_SNP [dm3] 3L_18568024_SNP [dm6]	T	C	3.393e^-4	1	INTRON AstC-R1	transposable element FlyBase
2L	8335378	2L_8335378_SNP [dm3] 2L_8335378_SNP [dm6]	A	T	3.397e^-4	1	INTERGENIC
X	10870230	X_10870230_SNP [dm3] X_10976197_SNP [dm6]	A	T	3.403e^-4	1	INTRON CG42339
2L	16430974	2L_16430974_SNP [dm3] 2L_16430974_SNP [dm6]	A	G	3.405e^-4	1	INTRON CG5888
X	2248072	X_2248072_INS [dm3] X_2354039_INS [dm6]	C	CTAACCGCACATGTGTACAT...	3.427e^-4	1	UTR_5_PRIME ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	7813422	3R_7813422_SNP [dm3] 3R_11987700_SNP [dm6]	C	G	3.452e^-4	1	INTRON mfas
3L	14162969	3L_14162969_DEL [dm3] 3L_14169869_DEL [dm6]	TATTTTTAAT	T	3.465e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	5373637	X_5373637_SNP [dm3] X_5479604_SNP [dm6]	T	C	3.473e^-4	1	INTRON SPR	TF binding site BDTNP1_TFBS_twi
2L	1343843	2L_1343843_SNP [dm3] 2L_1343843_SNP [dm6]	A	C	3.475e^-4	1	UPSTREAM Cdlc2 INTRON CG33922
3L	17888859	3L_17888859_INS [dm3] 3L_17895759_INS [dm6]	G	GTTGTGGAGTTCG...	3.478e^-4	1	INTRON Tsp74F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6558392	3L_6558392_SNP [dm3] 3L_6565292_SNP [dm6]	G	T	3.482e^-4	1	INTRON CG18769 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10364821	2R_10364821_SNP [dm3] 2R_14477316_SNP [dm6]	A	T	3.482e^-4	1	INTRON CR44462	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1345210	2L_1345210_SNP [dm3] 2L_1345210_SNP [dm6]	C	T	3.494e^-4	1	DOWNSTREAM CR45005 & 2 others INTERGENIC
2L	10106344	2L_10106344_SNP [dm3] 2L_10106344_SNP [dm6]	A	G	3.497e^-4	1	INTRON CG44153 & 1 other
3L	8649452	3L_8649452_SNP [dm3] 3L_8656352_SNP [dm6]	C	T	3.502e^-4	1	INTERGENIC
2R	12842193	2R_12842193_SNP [dm3] 2R_16954688_SNP [dm6]	G	A	3.521e^-4	1	SYNONYMOUS_CODING mute UPSTREAM PIG-V	TF binding site mE1_TFBS_HSA
3R	24909200	3R_24909200_SNP [dm3] 3R_29083478_SNP [dm6]	C	T	3.534e^-4	1	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2L	10274324	2L_10274324_SNP [dm3] 2L_10274324_SNP [dm6]	G	A	3.539e^-4	1	SYNONYMOUS_CODING Utx
2R	7120673	2R_7120673_SNP [dm3] 2R_11233168_SNP [dm6]	A	G	3.545e^-4	1	UPSTREAM metro & 1 other DOWNSTREAM CG13218 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14717087	2R_14717087_SNP [dm3] 2R_18829582_SNP [dm6]	G	C	3.546e^-4	1	UTR_5_PRIME CG15097 UPSTREAM CG15082
3L	2579953	3L_2579953_SNP [dm3] 3L_2579953_SNP [dm6]	T	G	3.556e^-4	1	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8696872	3L_8696872_SNP [dm3] 3L_8703772_SNP [dm6]	C	G	3.557e^-4	1	INTERGENIC
2L	14609545	2L_14609545_SNP [dm3] 2L_14609545_SNP [dm6]	G	A	3.563e^-4	1	INTRON osp
2L	10830915	2L_10830915_SNP [dm3] 2L_10830915_SNP [dm6]	A	T	3.564e^-4	1	INTRON Nos
2R	14608697	2R_14608697_SNP [dm3] 2R_18721192_SNP [dm6]	C	A	3.565e^-4	1	DOWNSTREAM mir-4982 INTRON Hs3st-A
2L	17551038	2L_17551038_SNP [dm3] 2L_17551038_SNP [dm6]	T	A	3.572e^-4	1	INTERGENIC
X	10031098	X_10031098_SNP [dm3] X_10137065_SNP [dm6]	A	C	3.577e^-4	1	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9534675	2R_9534675_INS [dm3] 2R_13647170_INS [dm6]	A	AA	3.581e^-4	1	INTRON fas
2L	4071756	2L_4071756_SNP [dm3] 2L_4071756_SNP [dm6]	A	T	3.582e^-4	1	INTRON ed	TF binding site mE1_TFBS_sens
3R	22823280	3R_22823280_SNP [dm3] 3R_26997558_SNP [dm6]	G	A	3.583e^-4	1	INTRON RYa-R
2R	13831592	2R_13831592_SNP [dm3] 2R_17944087_SNP [dm6]	A	G	3.586e^-4	1	INTERGENIC
3L	22188358	3L_22188358_SNP [dm3] 3L_22195258_SNP [dm6]	C	A	3.587e^-4	1	INTRON olf413	TF binding site mE1_TFBS_HSA
3R	19926176	3R_19926176_SNP [dm3] 3R_24100454_SNP [dm6]	G	T	3.592e^-4	1	INTRON 4EHP
2L	3565188	2L_3565188_SNP [dm3] 2L_3565188_SNP [dm6]	T	A	3.598e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17507585	2R_17507585_SNP [dm3] 2R_21620080_SNP [dm6]	G	A	3.602e^-4	1	SYNONYMOUS_CODING PTP-ER	TF binding site mE1_TFBS_cad
3L	5144461	3L_5144461_SNP [dm3] 3L_5151361_SNP [dm6]	A	C	3.609e^-4	1	INTRON Gen	TF binding site mE1_TFBS_HSA
3L	13295469	3L_13295469_SNP [dm3] 3L_13302369_SNP [dm6]	A	C	3.626e^-4	1	UPSTREAM CR43911 DOWNSTREAM CR44557 & 1 other INTERGENIC
2R	18062852	2R_18062852_SNP [dm3] 2R_22175347_SNP [dm6]	C	G	3.656e^-4	1	UPSTREAM CG3045 INTRON CG6758 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	12050411	3L_12050411_SNP [dm3] 3L_12057311_SNP [dm6]	C	T	3.661e^-4	1	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8508568	2L_8508568_SNP [dm3] 2L_8508568_SNP [dm6]	A	T	3.661e^-4	1	DOWNSTREAM CG13096 INTERGENIC
3R	9861265	3R_9861265_SNP [dm3] 3R_14035543_SNP [dm6]	C	T	3.665e^-4	1	SYNONYMOUS_CODING CG9922 DOWNSTREAM CG3061	TF binding site BDTNP1_TFBS_dl
2L	16874358	2L_16874358_SNP [dm3] 2L_16874358_SNP [dm6]	A	T	3.668e^-4	1	INTRON CR31781
2R	10954344	2R_10954344_SNP [dm3] 2R_15066839_SNP [dm6]	T	A	3.677e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	3668796	3L_3668796_SNP [dm3] 3L_3668796_SNP [dm6]	T	G	3.682e^-4	1	INTERGENIC
X	7434111	X_7434111_SNP [dm3] X_7540078_SNP [dm6]	G	A	3.711e^-4	1	INTRON CG32719
3L	3668807	3L_3668807_SNP [dm3] 3L_3668807_SNP [dm6]	C	T	3.712e^-4	1	INTERGENIC
3L	14721887	3L_14721887_SNP [dm3] 3L_14728787_SNP [dm6]	G	T	3.712e^-4	1	START_GAINED CG13473 UTR_5_PRIME CG13473 INTRON ome
2R	12633567	2R_12633567_SNP [dm3] 2R_16746062_SNP [dm6]	A	G	3.714e^-4	1	SYNONYMOUS_CODING CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10729906	2R_10729906_SNP [dm3] 2R_14842401_SNP [dm6]	T	C	3.730e^-4	1	DOWNSTREAM NaPi-T INTERGENIC
2R	12579178	2R_12579178_SNP [dm3] 2R_16691673_SNP [dm6]	C	A	3.732e^-4	1	UTR_5_PRIME CG5210 UPSTREAM CG5210 INTRON CG30463
2R	12579535	2R_12579535_SNP [dm3] 2R_16692030_SNP [dm6]	C	G	3.732e^-4	1	INTRON CG30463 & 1 other
2R	6465432	2R_6465432_SNP [dm3] 2R_10577927_SNP [dm6]	A	T	3.750e^-4	1	INTRON psq
2L	3987115	2L_3987115_SNP [dm3] 2L_3987115_SNP [dm6]	T	C	3.756e^-4	1	INTRON fred
2L	20983542	2L_20983542_DEL [dm3] 2L_20983542_DEL [dm6]	AA	A	3.757e^-4	1	INTRON CG42238
2L	16418188	2L_16418188_SNP [dm3] 2L_16418188_SNP [dm6]	T	C	3.761e^-4	1	UPSTREAM snoRNA:Me28S-A2958 INTRON CG5888
2L	16418196	2L_16418196_SNP [dm3] 2L_16418196_SNP [dm6]	A	G	3.761e^-4	1	UPSTREAM snoRNA:Me28S-A2958 INTRON CG5888
3R	21910037	3R_21910037_SNP [dm3] 3R_26084315_SNP [dm6]	C	T	3.769e^-4	1	INTRON dys
3L	22606957	3L_22606957_SNP [dm3] 3L_22613857_SNP [dm6]	C	T	3.770e^-4	1	INTRON CG14459
X	2997796	X_2997796_SNP [dm3] X_3103763_SNP [dm6]	T	A	3.776e^-4	1	INTRON kirre
3L	14100601	3L_14100601_SNP [dm3] 3L_14107501_SNP [dm6]	T	C	3.783e^-4	1	INTRON Sox21a	TF binding site BDTNP1_TFBS_dl
2L	13742596	2L_13742596_SNP [dm3] 2L_13742596_SNP [dm6]	A	G	3.790e^-4	1	INTERGENIC
2R	5833547	2R_5833547_SNP [dm3] 2R_9946042_SNP [dm6]	A	G	3.816e^-4	1	INTRON Mef2
X	1667646	X_1667646_SNP [dm3] X_1773613_SNP [dm6]	C	T	3.818e^-4	1	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	7813430	3R_7813430_SNP [dm3] 3R_11987708_SNP [dm6]	C	T	3.832e^-4	1	INTRON mfas
2L	16888381	2L_16888381_SNP [dm3] 2L_16888381_SNP [dm6]	G	A	3.833e^-4	1	UPSTREAM tweek & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Ubx
2L	15736367	2L_15736367_SNP [dm3] 2L_15736367_SNP [dm6]	T	A	3.852e^-4	1	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11792808	3L_11792808_SNP [dm3] 3L_11799708_SNP [dm6]	G	A	3.858e^-4	1	SYNONYMOUS_CODING CG10361 DOWNSTREAM Klp68D	TF binding site mE1_TFBS_HSA
3L	14718719	3L_14718719_SNP [dm3] 3L_14725619_SNP [dm6]	A	T	3.860e^-4	1	INTRON ome
X	20631756	X_20631756_SNP [dm3] X_20760729_SNP [dm6]	A	G	3.860e^-4	1	DOWNSTREAM shakB EXON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	3079308	2L_3079308_SNP [dm3] 2L_3079308_SNP [dm6]	T	C	3.864e^-4	1	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	14608644	2R_14608644_SNP [dm3] 2R_18721139_SNP [dm6]	A	C	3.870e^-4	1	DOWNSTREAM mir-4982 INTRON Hs3st-A
2L	2111147	2L_2111147_SNP [dm3] 2L_2111147_SNP [dm6]	A	C	3.877e^-4	1	INTERGENIC
X	1993091	X_1993091_SNP [dm3] X_2099058_SNP [dm6]	C	T	3.890e^-4	1	INTRON csw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16947662	2R_16947662_SNP [dm3] 2R_21060157_SNP [dm6]	G	T	3.905e^-4	1	UPSTREAM mRpL54 DOWNSTREAM cpa INTRON CG15653	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2997703	X_2997703_SNP [dm3] X_3103670_SNP [dm6]	T	C	3.912e^-4	1	INTRON kirre
2L	20524089	2L_20524089_SNP [dm3] 2L_20524089_SNP [dm6]	T	A	3.916e^-4	1	INTERGENIC
2L	1830233	2L_1830233_DEL [dm3] 2L_1830233_DEL [dm6]	TT	T	3.930e^-4	1	INTERGENIC
X	19039399	X_19039399_SNP [dm3] X_19145366_SNP [dm6]	T	A	3.931e^-4	1	INTRON RhoGAP18B
2L	9078603	2L_9078603_SNP [dm3] 2L_9078603_SNP [dm6]	T	A	3.939e^-4	1	DOWNSTREAM CG12439 INTERGENIC
2R	7833321	2R_7833321_SNP [dm3] 2R_11945816_SNP [dm6]	C	T	3.953e^-4	1	INTRON CG13188
X	4525177	X_4525177_SNP [dm3] X_4631144_SNP [dm6]	C	A	3.953e^-4	1	UTR_3_PRIME CG12179 UPSTREAM CG12184 DOWNSTREAM CG12179	transposable element FlyBase
2L	671203	2L_671203_SNP [dm3] 2L_671203_SNP [dm6]	G	T	3.958e^-4	1	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	13697509	X_13697509_SNP [dm3] X_13803476_SNP [dm6]	G	A	3.962e^-4	1	SYNONYMOUS_CODING inaE	TF binding site BDTNP1_TFBS_Med
3R	12832266	3R_12832266_DEL [dm3] 3R_17006544_DEL [dm6]	TT	T	3.970e^-4	1	INTRON Irc
2R	3389924	2R_3389924_SNP [dm3] 2R_7502419_SNP [dm6]	G	A	3.973e^-4	1	SYNONYMOUS_CODING didum	TF binding site mE1_TFBS_cad
2R	19430228	2R_19430228_SNP [dm3] 2R_23542705_SNP [dm6]	A	G	3.977e^-4	1	NON_SYNONYMOUS_CODING Gr59f UPSTREAM Gr59e	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	26846422	3R_26846422_SNP [dm3] 3R_31020700_SNP [dm6]	C	T	3.979e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3R	19809547	3R_19809547_SNP [dm3] 3R_23983825_SNP [dm6]	A	G	3.985e^-4	1	DOWNSTREAM CG31140 EXON CR31451
X	10031145	X_10031145_SNP [dm3] X_10137112_SNP [dm6]	T	G	3.989e^-4	1	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7171135	3L_7171135_SNP [dm3] 3L_7178035_SNP [dm6]	A	T	3.995e^-4	1	INTRON Dscam2
X	10031064	X_10031064_SNP [dm3] X_10137031_SNP [dm6]	A	C	3.998e^-4	1	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10870192	X_10870192_SNP [dm3] X_10976159_SNP [dm6]	T	A	4.014e^-4	1	INTRON CG42339
2L	7121059	2L_7121059_SNP [dm3] 2L_7121059_SNP [dm6]	T	C	4.019e^-4	1	INTRON Pvf3	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	9949744	3R_9949744_SNP [dm3] 3R_14124022_SNP [dm6]	T	A	4.024e^-4	1	DOWNSTREAM 140up INTRON twf
3R	23141571	3R_23141571_SNP [dm3] 3R_27315849_SNP [dm6]	C	T	4.026e^-4	1	NON_SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	22476064	3L_22476064_SNP [dm3] 3L_22482964_SNP [dm6]	T	C	4.055e^-4	1	INTERGENIC
2L	9749753	2L_9749753_SNP [dm3] 2L_9749753_SNP [dm6]	C	T	4.060e^-4	1	INTRON Cyp4e3
X	20632725	X_20632725_SNP [dm3] X_20761698_SNP [dm6]	T	C	4.066e^-4	1	UTR_3_PRIME shakB UPSTREAM CR43838
2R	13618069	2R_13618069_SNP [dm3] 2R_17730564_SNP [dm6]	T	C	4.070e^-4	1	INTRON CG4984 & 1 other
2R	12844805	2R_12844805_SNP [dm3] 2R_16957300_SNP [dm6]	C	T	4.109e^-4	1	UTR_3_PRIME PIG-V UPSTREAM CG6665	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sbb
X	10031004	X_10031004_DEL [dm3] X_10136971_DEL [dm6]	ATAAGAGGA	A	4.116e^-4	1	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	610522	X_610522_SNP [dm3] X_716489_SNP [dm6]	A	G	4.122e^-4	1	INTRON sdk	TF binding site BDTNP1_TFBS_dl
3R	22154942	3R_22154942_SNP [dm3] 3R_26329220_SNP [dm6]	T	A	4.122e^-4	1	INTRON CG33970
2R	19440400	2R_19440400_INS [dm3] 2R_23552877_INS [dm6]	T	TGAT	4.129e^-4	1	INTRON pita & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	7433998	X_7433998_SNP [dm3] X_7539965_SNP [dm6]	A	T	4.129e^-4	1	INTRON CG32719
3L	8245582	3L_8245582_SNP [dm3] 3L_8252482_SNP [dm6]	G	T	4.137e^-4	1	INTRON Dscam4
3R	24170542	3R_24170542_SNP [dm3] 3R_28344820_SNP [dm6]	G	A	4.145e^-4	1	SYNONYMOUS_CODING Moca-cyp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11090286	3R_11090286_SNP [dm3] 3R_15264564_SNP [dm6]	T	C	4.149e^-4	1	INTRON Set	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	2805495	3R_2805495_SNP [dm3] 3R_6979773_SNP [dm6]	A	T	4.155e^-4	1	INTRON Antp	TF binding site BDTNP1_TFBS_dl
2R	12843923	2R_12843923_SNP [dm3] 2R_16956418_SNP [dm6]	A	G	4.165e^-4	1	SYNONYMOUS_CODING PIG-V	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
X	5926438	X_5926438_SNP [dm3] X_6032405_SNP [dm6]	T	G	4.166e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	598872	X_598872_SNP [dm3] X_704839_SNP [dm6]	T	A	4.167e^-4	1	INTRON sdk
3R	25451624	3R_25451624_SNP [dm3] 3R_29625902_SNP [dm6]	C	T	4.167e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	13820006	2R_13820006_SNP [dm3] 2R_17932501_SNP [dm6]	T	C	4.172e^-4	1	INTERGENIC
3L	9884425	3L_9884425_SNP [dm3] 3L_9891325_SNP [dm6]	A	C	4.175e^-4	1	SYNONYMOUS_CODING CalpB	TF binding site mE1_TFBS_cad
2L	2124857	2L_2124857_SNP [dm3] 2L_2124857_SNP [dm6]	C	A	4.176e^-4	1	INTERGENIC
X	2997707	X_2997707_SNP [dm3] X_3103674_SNP [dm6]	G	C	4.187e^-4	1	INTRON kirre
2L	10618864	2L_10618864_SNP [dm3] 2L_10618864_SNP [dm6]	C	A	4.192e^-4	1	INTRON Trim9
2L	8530721	2L_8530721_INS [dm3] 2L_8530721_INS [dm6]	C	CAC	4.194e^-4	1	INTRON CG17834
2L	20517126	2L_20517126_SNP [dm3] 2L_20517126_SNP [dm6]	G	A	4.204e^-4	1	INTERGENIC
2R	7610918	2R_7610918_SNP [dm3] 2R_11723413_SNP [dm6]	G	T	4.207e^-4	1	INTRON pyr
X	3784441	X_3784441_DEL [dm3] X_3890408_DEL [dm6]	CC	C	4.214e^-4	1	UTR_3_PRIME CG15239
2L	10520350	2L_10520350_SNP [dm3] 2L_10520350_SNP [dm6]	T	C	4.216e^-4	1	INTERGENIC
3R	24571366	3R_24571366_SNP [dm3] 3R_28745644_SNP [dm6]	C	T	4.221e^-4	1	UPSTREAM AstA-R2 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	5241211	2L_5241211_SNP [dm3] 2L_5241211_SNP [dm6]	A	G	4.221e^-4	1	UPSTREAM tRNA:CR31914 DOWNSTREAM tRNA:CR31971 INTRON tkv
X	20634302	X_20634302_SNP [dm3] X_20763275_SNP [dm6]	A	G	4.223e^-4	1	UTR_3_PRIME shakB
4	62622	4_62622_SNP [dm3] 4_41996_SNP [dm6]	A	G	4.226e^-4	1	UPSTREAM CR45124 INTRON PlexB	transposable element FlyBase
3R	19659476	3R_19659476_SNP [dm3] 3R_23833754_SNP [dm6]	T	A	4.231e^-4	1	INTRON CG34355
X	20632030	X_20632030_DEL [dm3] X_20761003_DEL [dm6]	TGTAT	T	4.231e^-4	1	UPSTREAM CR43838 DOWNSTREAM shakB INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	16887555	2L_16887555_SNP [dm3] 2L_16887555_SNP [dm6]	T	C	4.234e^-4	1	SYNONYMOUS_CODING CG6115 UPSTREAM tweek & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1334307	2L_1334307_SNP [dm3] 2L_1334307_SNP [dm6]	G	T	4.234e^-4	1	SYNONYMOUS_CODING CG5440
2R	10730080	2R_10730080_SNP [dm3] 2R_14842575_SNP [dm6]	A	T	4.241e^-4	1	DOWNSTREAM NaPi-T INTERGENIC
2R	16908651	2R_16908651_SNP [dm3] 2R_21021146_SNP [dm6]	G	C	4.248e^-4	1	INTRON RIC-3
2R	12842122	2R_12842122_SNP [dm3] 2R_16954617_SNP [dm6]	T	C	4.249e^-4	1	UPSTREAM PIG-V INTRON mute
3R	9726798	3R_9726798_SNP [dm3] 3R_13901076_SNP [dm6]	G	A	4.261e^-4	1	UPSTREAM ems INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	2997798	X_2997798_SNP [dm3] X_3103765_SNP [dm6]	A	T	4.263e^-4	1	INTRON kirre
2R	19572328	2R_19572328_SNP [dm3] 2R_23684805_SNP [dm6]	G	A	4.266e^-4	1	SYNONYMOUS_CODING l_2_efl DOWNSTREAM St3 INTRON St3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	12235055	X_12235055_SNP [dm3] X_12341022_SNP [dm6]	C	A	4.267e^-4	1	INTERGENIC
3R	15787432	3R_15787432_SNP [dm3] 3R_19961710_SNP [dm6]	G	T	4.267e^-4	1	INTRON Hs6st
2L	14609693	2L_14609693_SNP [dm3] 2L_14609693_SNP [dm6]	G	C	4.268e^-4	1	INTRON osp
2L	15388416	2L_15388416_SNP [dm3] 2L_15388416_SNP [dm6]	C	A	4.275e^-4	1	INTERGENIC
X	20631634	X_20631634_SNP [dm3] X_20760607_SNP [dm6]	G	C	4.277e^-4	1	DOWNSTREAM CR44710 & 1 other EXON CR43838	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	4467089	X_4467089_SNP [dm3] X_4573056_SNP [dm6]	T	A	4.284e^-4	1	INTRON CR32773
X	2857708	X_2857708_INS [dm3] X_2963675_INS [dm6]	T	TTTGT	4.285e^-4	1	INTRON kirre & 1 other
2L	2339933	2L_2339933_SNP [dm3] 2L_2339933_SNP [dm6]	T	C	4.293e^-4	1	SYNONYMOUS_CODING eys INTRON CG9967	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17977286	3L_17977286_SNP [dm3] 3L_17984186_SNP [dm6]	T	C	4.297e^-4	1	INTRON Eip75B
3L	15745102	3L_15745102_SNP [dm3] 3L_15752002_SNP [dm6]	G	C	4.299e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8372552	3R_8372552_SNP [dm3] 3R_12546830_SNP [dm6]	A	T	4.300e^-4	1	INTRON Octbeta3R	TF binding site mE1_TFBS_sbb
2L	5241190	2L_5241190_SNP [dm3] 2L_5241190_SNP [dm6]	G	C	4.307e^-4	1	UPSTREAM tRNA:CR31914 DOWNSTREAM tRNA:CR31971 INTRON tkv
2L	9094699	2L_9094699_SNP [dm3] 2L_9094699_SNP [dm6]	G	A	4.315e^-4	1	INTERGENIC
2R	14021193	2R_14021193_SNP [dm3] 2R_18133688_SNP [dm6]	G	A	4.320e^-4	1	INTRON Hsf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	22630352	3L_22630352_SNP [dm3] 3L_22637252_SNP [dm6]	T	C	4.321e^-4	1	UTR_5_PRIME CG14459
X	17180015	X_17180015_DEL [dm3] X_17285982_DEL [dm6]	AA	A	4.323e^-4	1	UTR_3_PRIME Fim INTRON CG5445	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2997782	X_2997782_SNP [dm3] X_3103749_SNP [dm6]	T	C	4.326e^-4	1	INTRON kirre
3R	14182978	3R_14182978_SNP [dm3] 3R_18357256_SNP [dm6]	G	A	4.336e^-4	1	INTRON CG15803
2L	16389444	2L_16389444_SNP [dm3] 2L_16389444_SNP [dm6]	A	T	4.340e^-4	1	INTERGENIC
2L	2454663	2L_2454663_SNP [dm3] 2L_2454663_SNP [dm6]	G	A	4.346e^-4	1	UPSTREAM dpp INTRON dpp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14606386	2R_14606386_SNP [dm3] 2R_18718881_SNP [dm6]	G	A	4.352e^-4	1	UTR_5_PRIME Hs3st-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5144459	3L_5144459_SNP [dm3] 3L_5151359_SNP [dm6]	T	A	4.352e^-4	1	INTRON Gen	TF binding site mE1_TFBS_HSA
2L	10592611	2L_10592611_SNP [dm3] 2L_10592611_SNP [dm6]	A	T	4.375e^-4	1	INTRON Trim9
2L	16556969	2L_16556969_SNP [dm3] 2L_16556969_SNP [dm6]	C	T	4.382e^-4	1	INTRON CG42389
2L	16364225	2L_16364225_SNP [dm3] 2L_16364225_SNP [dm6]	A	T	4.385e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	20380663	2R_20380663_DEL [dm3] 2R_24493140_DEL [dm6]	AC	A	4.395e^-4	1	UPSTREAM CG13589 DOWNSTREAM CG13590 INTERGENIC
3L	4628135	3L_4628135_SNP [dm3] 3L_4628135_SNP [dm6]	T	C	4.398e^-4	1	SYNONYMOUS_CODING Rpd3	TF binding site mE1_TFBS_sens
3L	23083484	3L_23083484_SNP [dm3] 3L_23090384_SNP [dm6]	G	A	4.408e^-4	1	INTERGENIC	transposable element FlyBase
3R	15384011	3R_15384011_INS [dm3] 3R_19558289_INS [dm6]	A	ATTTA	4.408e^-4	1	INTRON Dys
3R	10265603	3R_10265603_SNP [dm3] 3R_14439881_SNP [dm6]	C	A	4.411e^-4	1	INTRON cv-c	TF binding site mE1_TFBS_sbb
X	18786760	X_18786760_SNP [dm3] X_18892727_SNP [dm6]	A	T	4.422e^-4	1	INTRON CG7358	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3909138	X_3909138_SNP [dm3] X_4015105_SNP [dm6]	G	C	4.424e^-4	1	INTERGENIC
3R	18896408	3R_18896408_DEL [dm3] 3R_23070686_DEL [dm6]	GTATTACGCAT...	G	4.435e^-4	1	UTR_3_PRIME CG13830
2L	18603047	2L_18603047_SNP [dm3] 2L_18603047_SNP [dm6]	C	A	4.438e^-4	1	INTRON CG10413
3R	10179867	3R_10179867_SNP [dm3] 3R_14354145_SNP [dm6]	A	T	4.448e^-4	1	INTRON NK7.1
2L	8659483	2L_8659483_SNP [dm3] 2L_8659483_SNP [dm6]	T	C	4.448e^-4	1	INTRON Sema-1a
3L	16741519	3L_16741519_SNP [dm3] 3L_16748419_SNP [dm6]	A	G	4.456e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13259383	2R_13259383_SNP [dm3] 2R_17371878_SNP [dm6]	C	A	4.457e^-4	1	INTRON mbl
X	6456140	X_6456140_SNP [dm3] X_6562107_SNP [dm6]	A	C	4.465e^-4	1	SYNONYMOUS_CODING CG34417
X	2997709	X_2997709_SNP [dm3] X_3103676_SNP [dm6]	T	G	4.468e^-4	1	INTRON kirre
3R	6572848	3R_6572848_SNP [dm3] 3R_10747126_SNP [dm6]	T	C	4.470e^-4	1	INTRON TkR86C
3L	11686886	3L_11686886_SNP [dm3] 3L_11693786_SNP [dm6]	G	T	4.470e^-4	1	DOWNSTREAM CG11652 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3975472	3L_3975472_SNP [dm3] 3L_3975472_SNP [dm6]	G	A	4.473e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	19394995	2R_19394995_INS [dm3] 2R_23507472_INS [dm6]	C	CC	4.498e^-4	1	EXON CR43794
3R	17809256	3R_17809256_SNP [dm3] 3R_21983534_SNP [dm6]	G	C	4.513e^-4	1	INTRON Eip93F
2R	20385418	2R_20385418_SNP [dm3] 2R_24497895_SNP [dm6]	A	G	4.528e^-4	1	UPSTREAM Yu DOWNSTREAM Crtp INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7093423	2L_7093423_SNP [dm3] 2L_7093423_SNP [dm6]	G	C	4.534e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8139880	2L_8139880_SNP [dm3] 2L_8139880_SNP [dm6]	G	C	4.543e^-4	1	SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
X	20630487	X_20630487_SNP [dm3] X_20759460_SNP [dm6]	T	C	4.546e^-4	1	DOWNSTREAM CR43838 EXON CR44710
3L	10721250	3L_10721250_SNP [dm3] 3L_10728150_SNP [dm6]	C	A	4.578e^-4	1	INTERGENIC
X	16756442	X_16756442_SNP [dm3] X_16862409_SNP [dm6]	G	A	4.579e^-4	1	INTRON CG13003
2R	19070353	2R_19070353_SNP [dm3] 2R_23182830_SNP [dm6]	G	A	4.594e^-4	1	INTRON CG34371
3R	15786202	3R_15786202_SNP [dm3] 3R_19960480_SNP [dm6]	C	T	4.594e^-4	1	INTRON Hs6st
3L	8770460	3L_8770460_SNP [dm3] 3L_8777360_SNP [dm6]	T	A	4.604e^-4	1	INTRON Fhos
3L	4516124	3L_4516124_SNP [dm3] 3L_4516124_SNP [dm6]	G	A	4.612e^-4	1	INTRON Tie	TF binding site mE1_TFBS_inv
3L	15735487	3L_15735487_SNP [dm3] 3L_15742387_SNP [dm6]	C	T	4.627e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	20102551	3R_20102551_SNP [dm3] 3R_24276829_SNP [dm6]	T	A	4.641e^-4	1	UTR_5_PRIME Orct	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
2R	11564395	2R_11564395_SNP [dm3] 2R_15676890_SNP [dm6]	T	A	4.655e^-4	1	UPSTREAM fus DOWNSTREAM CG8207 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	16031970	2R_16031970_SNP [dm3] 2R_20144465_SNP [dm6]	C	G	4.665e^-4	1	INTERGENIC
3R	15384015	3R_15384015_INS [dm3] 3R_19558293_INS [dm6]	T	TAG	4.671e^-4	1	INTRON Dys
3L	823974	3L_823974_SNP [dm3] 3L_823974_SNP [dm6]	C	T	4.672e^-4	1	INTERGENIC
X	20631006	X_20631006_SNP [dm3] X_20759979_SNP [dm6]	A	G	4.675e^-4	1	DOWNSTREAM CR44710 EXON CR43838	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	14758587	3L_14758587_SNP [dm3] 3L_14765487_SNP [dm6]	T	C	4.679e^-4	1	SYNONYMOUS_CODING CG9384	TF binding site mE1_TFBS_cad
X	1420594	X_1420594_SNP [dm3] X_1526561_SNP [dm6]	T	A	4.685e^-4	1	INTRON Mur2B
3L	22596229	3L_22596229_SNP [dm3] 3L_22603129_SNP [dm6]	G	C	4.707e^-4	1	INTRON CG14459
3R	17329191	3R_17329191_SNP [dm3] 3R_21503469_SNP [dm6]	T	C	4.709e^-4	1	INTRON C15	TF binding site mE1_TFBS_chinmo
3L	10935786	3L_10935786_SNP [dm3] 3L_10942686_SNP [dm6]	T	A	4.709e^-4	1	INTERGENIC
3L	24001926	3L_24001926_SNP [dm3] 3L_24008826_SNP [dm6]	T	A	4.716e^-4	1	INTERGENIC
4	71913	4_71913_SNP [dm3] 4_51287_SNP [dm6]	T	A	4.717e^-4	1	INTRON ci	TF binding site BDTNP1_TFBS_dl
2R	18335949	2R_18335949_SNP [dm3] 2R_22448444_SNP [dm6]	G	C	4.738e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18954134	3R_18954134_SNP [dm3] 3R_23128412_SNP [dm6]	T	A	4.743e^-4	1	UTR_3_PRIME hh UPSTREAM CG31457	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	19439648	2R_19439648_SNP [dm3] 2R_23552125_SNP [dm6]	C	G	4.746e^-4	1	UPSTREAM pita INTRON pita & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	23934480	3R_23934480_SNP [dm3] 3R_28108758_SNP [dm6]	A	G	4.772e^-4	1	INTERGENIC
3R	19207116	3R_19207116_SNP [dm3] 3R_23381394_SNP [dm6]	C	T	4.787e^-4	1	INTRON CG4393	TF binding site mE1_TFBS_chinmo
2R	2680975	2R_2680975_SNP [dm3] 2R_6793470_SNP [dm6]	G	T	4.789e^-4	1	INTRON Epac
2R	19400350	2R_19400350_SNP [dm3] 2R_23512827_SNP [dm6]	G	A	4.790e^-4	1	UPSTREAM CG3906 INTERGENIC
2L	19723140	2L_19723140_SNP [dm3] 2L_19723140_SNP [dm6]	T	C	4.814e^-4	1	INTRON Lar
3L	1980027	3L_1980027_SNP [dm3] 3L_1980027_SNP [dm6]	T	C	4.824e^-4	1	INTERGENIC
2L	18882475	2L_18882475_SNP [dm3] 2L_18882475_SNP [dm6]	A	T	4.828e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15750050	3R_15750050_SNP [dm3] 3R_19924328_SNP [dm6]	A	T	4.829e^-4	1	INTRON CG4462
3L	18560877	3L_18560877_SNP [dm3] 3L_18567777_SNP [dm6]	G	T	4.833e^-4	1	INTRON AstC-R1
2R	14717084	2R_14717084_SNP [dm3] 2R_18829579_SNP [dm6]	C	T	4.840e^-4	1	UTR_5_PRIME CG15097 UPSTREAM CG15082
2L	15388385	2L_15388385_SNP [dm3] 2L_15388385_SNP [dm6]	G	A	4.842e^-4	1	INTERGENIC
X	18397275	X_18397275_SNP [dm3] X_18503242_SNP [dm6]	A	G	4.844e^-4	1	SYNONYMOUS_CODING Wnt5	TF binding site mE1_TFBS_cad
2R	16330882	2R_16330882_SNP [dm3] 2R_20443377_SNP [dm6]	T	C	4.846e^-4	1	INTRON CG12484	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20524002	2L_20524002_SNP [dm3] 2L_20524002_SNP [dm6]	G	T	4.860e^-4	1	INTERGENIC
X	1990825	X_1990825_SNP [dm3] X_2096792_SNP [dm6]	T	C	4.861e^-4	1	INTRON csw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14631631	3L_14631631_SNP [dm3] 3L_14638531_SNP [dm6]	C	A	4.862e^-4	1	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16072481	2R_16072481_SNP [dm3] 2R_20184976_SNP [dm6]	T	C	4.878e^-4	1	INTERGENIC
3L	8696862	3L_8696862_SNP [dm3] 3L_8703762_SNP [dm6]	G	A	4.879e^-4	1	INTERGENIC
3L	4519131	3L_4519131_SNP [dm3] 3L_4519131_SNP [dm6]	A	G	4.884e^-4	1	INTRON Tie
3L	14162709	3L_14162709_SNP [dm3] 3L_14169609_SNP [dm6]	T	A	4.916e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	11552718	2L_11552718_SNP [dm3] 2L_11552718_SNP [dm6]	T	C	4.918e^-4	1	INTERGENIC
3R	18475337	3R_18475337_SNP [dm3] 3R_22649615_SNP [dm6]	T	C	4.922e^-4	1	INTRON CG45058
2R	16123583	2R_16123583_SNP [dm3] 2R_20236078_SNP [dm6]	G	A	4.925e^-4	1	UPSTREAM CG11099 DOWNSTREAM CG44624 & 1 other INTERGENIC
3R	10262594	3R_10262594_SNP [dm3] 3R_14436872_SNP [dm6]	A	G	4.927e^-4	1	INTRON cv-c
3L	12974608	3L_12974608_SNP [dm3] 3L_12981508_SNP [dm6]	T	C	4.934e^-4	1	INTERGENIC
3L	4685558	3L_4685558_SNP [dm3] 3L_4685558_SNP [dm6]	C	A	4.938e^-4	1	INTRON axo
2L	8888224	2L_8888224_SNP [dm3] 2L_8888224_SNP [dm6]	T	C	4.938e^-4	1	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	3687097	2L_3687097_SNP [dm3] 2L_3687097_SNP [dm6]	A	C	4.952e^-4	1	INTRON CG34340
2L	7552033	2L_7552033_SNP [dm3] 2L_7552033_SNP [dm6]	C	T	4.954e^-4	1	INTRON RapGAP1
X	20633919	X_20633919_SNP [dm3] X_20762892_SNP [dm6]	T	C	4.968e^-4	1	UTR_3_PRIME shakB
2L	1836820	2L_1836820_SNP [dm3] 2L_1836820_SNP [dm6]	G	C	4.970e^-4	1	INTRON wry
3R	12832738	3R_12832738_DEL [dm3] 3R_17007016_DEL [dm6]	GA	G	4.972e^-4	1	INTRON Irc
3R	24251488	3R_24251488_SNP [dm3] 3R_28425766_SNP [dm6]	C	G	4.982e^-4	1	INTRON beat-VI
3L	22658571	3L_22658571_SNP [dm3] 3L_22665471_SNP [dm6]	G	A	4.990e^-4	1	EXON CR43270
2L	13740724	2L_13740724_SNP [dm3] 2L_13740724_SNP [dm6]	T	C	4.992e^-4	1	INTERGENIC
2L	2390428	2L_2390428_SNP [dm3] 2L_2390428_SNP [dm6]	A	T	4.997e^-4	1	NON_SYNONYMOUS_CODING CG43750
2L	2390430	2L_2390430_SNP [dm3] 2L_2390430_SNP [dm6]	T	C	4.997e^-4	1	NON_SYNONYMOUS_CODING CG43750
2L	2390440	2L_2390440_SNP [dm3] 2L_2390440_SNP [dm6]	C	T	4.997e^-4	1	NON_SYNONYMOUS_CODING CG43750
3L	2416406	3L_2416406_SNP [dm3] 3L_2416406_SNP [dm6]	G	A	4.999e^-4	1	INTRON CG45186
3R	19207118	3R_19207118_SNP [dm3] 3R_23381396_SNP [dm6]	C	T	5.007e^-4	1	INTRON CG4393	TF binding site mE1_TFBS_chinmo
X	6536449	X_6536449_DEL [dm3] X_6642416_DEL [dm6]	CATATACATAA...	C	5.013e^-4	1	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13259372	2R_13259372_SNP [dm3] 2R_17371867_SNP [dm6]	C	T	5.016e^-4	1	INTRON mbl
3R	15060400	3R_15060400_SNP [dm3] 3R_19234678_SNP [dm6]	C	A	5.032e^-4	1	SYNONYMOUS_CODING unc79
2R	20380641	2R_20380641_SNP [dm3] 2R_24493118_SNP [dm6]	T	C	5.033e^-4	1	UPSTREAM CG13589 DOWNSTREAM CG13590 INTERGENIC
3L	14095894	3L_14095894_SNP [dm3] 3L_14102794_SNP [dm6]	A	G	5.051e^-4	1	DOWNSTREAM Sox21a INTERGENIC
X	6456082	X_6456082_SNP [dm3] X_6562049_SNP [dm6]	T	C	5.055e^-4	1	NON_SYNONYMOUS_CODING CG34417	TF binding site mE1_TFBS_sens
2R	7435608	2R_7435608_SNP [dm3] 2R_11548103_SNP [dm6]	C	A	5.062e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3836758	2L_3836758_SNP [dm3] 2L_3836758_SNP [dm6]	T	C	5.063e^-4	1	UPSTREAM slp2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4569466	2L_4569466_SNP [dm3] 2L_4569466_SNP [dm6]	G	A	5.075e^-4	1	INTRON dp	TF binding site mE1_TFBS_sens
2R	8156289	2R_8156289_SNP [dm3] 2R_12268784_SNP [dm6]	G	T	5.083e^-4	1	INTRON Cam
3L	9629318	3L_9629318_SNP [dm3] 3L_9636218_SNP [dm6]	A	C	5.085e^-4	1	INTRON fry
3R	12824703	3R_12824703_SNP [dm3] 3R_16998981_SNP [dm6]	G	A	5.104e^-4	1	SPLICE_SITE_REGION CG3534 DOWNSTREAM CG16941 INTRON CG3534
3R	18757759	3R_18757759_SNP [dm3] 3R_22932037_SNP [dm6]	T	G	5.114e^-4	1	INTRON klg
X	2290649	X_2290649_SNP [dm3] X_2396616_SNP [dm6]	G	T	5.123e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2R	7435560	2R_7435560_SNP [dm3] 2R_11548055_SNP [dm6]	A	G	5.127e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	7257568	3L_7257568_SNP [dm3] 3L_7264468_SNP [dm6]	G	A	5.132e^-4	1	UPSTREAM CG14830 INTERGENIC
X	14144886	X_14144886_SNP [dm3] X_14250853_SNP [dm6]	A	G	5.159e^-4	1	SYNONYMOUS_CODING mud	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6803952	2L_6803952_SNP [dm3] 2L_6803952_SNP [dm6]	A	G	5.164e^-4	1	SYNONYMOUS_CODING CG11236 DOWNSTREAM CG17375 INTRON CG11236	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	9576471	3L_9576471_SNP [dm3] 3L_9583371_SNP [dm6]	T	A	5.170e^-4	1	UPSTREAM CG42673 INTRON CG42673
3R	9735037	3R_9735037_SNP [dm3] 3R_13909315_SNP [dm6]	C	T	5.174e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11576126	2L_11576126_SNP [dm3] 2L_11576126_SNP [dm6]	A	C	5.179e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17644561	2L_17644561_SNP [dm3] 2L_17644561_SNP [dm6]	C	T	5.184e^-4	1	EXON CR45699
3R	9105137	3R_9105137_DEL [dm3] 3R_13279415_DEL [dm6]	CC	C	5.190e^-4	1	UPSTREAM CG8630 INTERGENIC
X	19231751	X_19231751_DEL [dm3] X_19337718_DEL [dm6]	ACTGAACATATCATAAACAC...	A	5.204e^-4	1	INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2R	17299617	2R_17299617_SNP [dm3] 2R_21412112_SNP [dm6]	T	G	5.204e^-4	1	INTRON Sdc	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	22160822	3L_22160822_SNP [dm3] 3L_22167722_SNP [dm6]	G	A	5.225e^-4	1	INTRON olf413
3L	1827971	3L_1827971_SNP [dm3] 3L_1827971_SNP [dm6]	T	G	5.225e^-4	1	INTRON Cpr62Ba
3R	7754034	3R_7754034_SNP [dm3] 3R_11928312_SNP [dm6]	A	G	5.226e^-4	1	INTRON Cad87A
3L	15735007	3L_15735007_SNP [dm3] 3L_15741907_SNP [dm6]	G	C	5.242e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	5326980	3L_5326980_SNP [dm3] 3L_5333880_SNP [dm6]	G	A	5.245e^-4	1	UPSTREAM CR45742 INTERGENIC
X	5279803	X_5279803_SNP [dm3] X_5385770_SNP [dm6]	G	A	5.262e^-4	1	INTRON SK
3L	9626227	3L_9626227_SNP [dm3] 3L_9633127_SNP [dm6]	C	A	5.267e^-4	1	SYNONYMOUS_CODING fry	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20631538	X_20631538_SNP [dm3] X_20760511_SNP [dm6]	T	A	5.272e^-4	1	DOWNSTREAM CR44710 & 1 other EXON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	8770466	3L_8770466_SNP [dm3] 3L_8777366_SNP [dm6]	A	T	5.280e^-4	1	INTRON Fhos
3L	22132359	3L_22132359_SNP [dm3] 3L_22139259_SNP [dm6]	C	T	5.284e^-4	1	INTRON olf413	TF binding site mE1_TFBS_inv
2L	6087659	2L_6087659_SNP [dm3] 2L_6087659_SNP [dm6]	G	A	5.293e^-4	1	INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	20379842	2R_20379842_SNP [dm3] 2R_24492319_SNP [dm6]	G	A	5.303e^-4	1	SYNONYMOUS_CODING CG13589 DOWNSTREAM CG13590
3L	15017001	3L_15017001_SNP [dm3] 3L_15023901_SNP [dm6]	C	A	5.310e^-4	1	UTR_3_PRIME CG32148 INTRON Sytbeta
3R	14061498	3R_14061498_SNP [dm3] 3R_18235776_SNP [dm6]	A	T	5.312e^-4	1	UPSTREAM repo INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15049296	2L_15049296_SNP [dm3] 2L_15049296_SNP [dm6]	G	A	5.334e^-4	1	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	16396757	2R_16396757_SNP [dm3] 2R_20509252_SNP [dm6]	T	G	5.368e^-4	1	UPSTREAM CR44647 DOWNSTREAM CR44646 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15360471	3R_15360471_SNP [dm3] 3R_19534749_SNP [dm6]	G	A	5.372e^-4	1	INTRON Dys
2L	16418204	2L_16418204_SNP [dm3] 2L_16418204_SNP [dm6]	T	A	5.374e^-4	1	UPSTREAM snoRNA:Me28S-A2958 INTRON CG5888
3R	4585578	3R_4585578_SNP [dm3] 3R_8759856_SNP [dm6]	T	C	5.386e^-4	1	INTRON CG11768 & 1 other
3L	8649903	3L_8649903_SNP [dm3] 3L_8656803_SNP [dm6]	T	C	5.392e^-4	1	INTERGENIC
2L	6803949	2L_6803949_SNP [dm3] 2L_6803949_SNP [dm6]	C	T	5.409e^-4	1	SYNONYMOUS_CODING CG11236 DOWNSTREAM CG17375 INTRON CG11236	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	20251978	X_20251978_SNP [dm3] X_20380951_SNP [dm6]	T	A	5.415e^-4	1	INTERGENIC
2L	7238354	2L_7238354_SNP [dm3] 2L_7238354_SNP [dm6]	A	T	5.419e^-4	1	INTRON Ndae1
3R	23934493	3R_23934493_SNP [dm3] 3R_28108771_SNP [dm6]	T	A	5.430e^-4	1	INTERGENIC
2R	12850000	2R_12850000_SNP [dm3] 2R_16962495_SNP [dm6]	C	T	5.436e^-4	1	INTERGENIC
3R	5251850	3R_5251850_SNP [dm3] 3R_9426128_SNP [dm6]	C	T	5.447e^-4	1	INTRON ps
3R	8904527	3R_8904527_SNP [dm3] 3R_13078805_SNP [dm6]	A	T	5.449e^-4	1	DOWNSTREAM sim INTERGENIC	TF binding site mE1_TFBS_bab1
2L	14917846	2L_14917846_SNP [dm3] 2L_14917846_SNP [dm6]	C	T	5.457e^-4	1	INTRON CG42313
2L	15331016	2L_15331016_SNP [dm3] 2L_15331016_SNP [dm6]	T	C	5.472e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12837040	2R_12837040_SNP [dm3] 2R_16949535_SNP [dm6]	A	T	5.483e^-4	1	SYNONYMOUS_CODING mute	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12234988	X_12234988_SNP [dm3] X_12340955_SNP [dm6]	T	C	5.483e^-4	1	INTERGENIC
2L	7143603	2L_7143603_SNP [dm3] 2L_7143603_SNP [dm6]	C	G	5.488e^-4	1	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15787600	3R_15787600_SNP [dm3] 3R_19961878_SNP [dm6]	T	A	5.496e^-4	1	INTRON Hs6st
X	20632255	X_20632255_SNP [dm3] X_20761228_SNP [dm6]	T	A	5.509e^-4	1	UTR_3_PRIME shakB UPSTREAM CR43838	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
3R	23512415	3R_23512415_INS [dm3] 3R_27686693_INS [dm6]	A	AAA	5.519e^-4	1	INTRON CG12880 & 1 other	TF binding site mE1_TFBS_cad
3L	8642396	3L_8642396_SNP [dm3] 3L_8649296_SNP [dm6]	G	C	5.520e^-4	1	UPSTREAM Pex7 & 1 other INTRON Pex7
3L	14631874	3L_14631874_SNP [dm3] 3L_14638774_SNP [dm6]	T	C	5.531e^-4	1	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	11039072	3L_11039072_SNP [dm3] 3L_11045972_SNP [dm6]	T	G	5.532e^-4	1	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	20611809	X_20611809_SNP [dm3] X_20740782_SNP [dm6]	A	C	5.541e^-4	1	DOWNSTREAM CR45059 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	23141622	3R_23141622_SNP [dm3] 3R_27315900_SNP [dm6]	G	A	5.546e^-4	1	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	12831819	3R_12831819_SNP [dm3] 3R_17006097_SNP [dm6]	T	C	5.546e^-4	1	SPLICE_SITE_REGION Irc INTRON Irc
2L	7139301	2L_7139301_SNP [dm3] 2L_7139301_SNP [dm6]	A	T	5.556e^-4	1	INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16438690	2R_16438690_SNP [dm3] 2R_20551185_SNP [dm6]	G	A	5.562e^-4	1	SYNONYMOUS_CODING CG13430 UTR_3_PRIME CG18065	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3R	7754327	3R_7754327_SNP [dm3] 3R_11928605_SNP [dm6]	G	C	5.568e^-4	1	INTRON Cad87A
2L	15388369	2L_15388369_SNP [dm3] 2L_15388369_SNP [dm6]	T	A	5.575e^-4	1	INTERGENIC
3L	15605025	3L_15605025_SNP [dm3] 3L_15611925_SNP [dm6]	T	A	5.591e^-4	1	NON_SYNONYMOUS_CODING CG13449 UPSTREAM CG13449
3L	12698463	3L_12698463_SNP [dm3] 3L_12705363_SNP [dm6]	C	T	5.591e^-4	1	INTRON mirr
3R	7201802	3R_7201802_SNP [dm3] 3R_11376080_SNP [dm6]	C	T	5.604e^-4	1	SYNONYMOUS_CODING pros INTRON pros	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23263509	3R_23263509_SNP [dm3] 3R_27437787_SNP [dm6]	C	A	5.604e^-4	1	UPSTREAM side INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8235479	2L_8235479_SNP [dm3] 2L_8235479_SNP [dm6]	T	G	5.605e^-4	1	INTRON Pvr
2R	20512356	2R_20512356_SNP [dm3] 2R_24624833_SNP [dm6]	T	C	5.609e^-4	1	INTRON CG13594
3L	10506844	3L_10506844_SNP [dm3] 3L_10513744_SNP [dm6]	A	T	5.620e^-4	1	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl
X	5279850	X_5279850_DEL [dm3] X_5385817_DEL [dm6]	CTTC	C	5.621e^-4	1	INTRON SK
3L	22136525	3L_22136525_SNP [dm3] 3L_22143425_SNP [dm6]	G	T	5.623e^-4	1	INTRON olf413	TF binding site mE1_TFBS_HSA
2L	14382459	2L_14382459_SNP [dm3] 2L_14382459_SNP [dm6]	C	G	5.624e^-4	1	INTERGENIC
3R	18088947	3R_18088947_SNP [dm3] 3R_22263225_SNP [dm6]	G	A	5.626e^-4	1	INTRON SKIP
2R	16900000	2R_16900000_SNP [dm3] 2R_21012495_SNP [dm6]	C	T	5.631e^-4	1	NON_SYNONYMOUS_CODING CG9346 UPSTREAM grau	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	15882502	2R_15882502_DEL [dm3] 2R_19994997_DEL [dm6]	TTG	AC	5.637e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11031453	3L_11031453_SNP [dm3] 3L_11038353_SNP [dm6]	A	G	5.638e^-4	1	SYNONYMOUS_CODING CG43693
X	8267022	X_8267022_INS [dm3] X_8372989_INS [dm6]	A	AA	5.639e^-4	1	INTERGENIC
2L	7058177	2L_7058177_SNP [dm3] 2L_7058177_SNP [dm6]	A	G	5.647e^-4	1	SYNONYMOUS_CODING Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	10729929	2R_10729929_SNP [dm3] 2R_14842424_SNP [dm6]	C	A	5.651e^-4	1	DOWNSTREAM NaPi-T INTERGENIC
2R	10730077	2R_10730077_SNP [dm3] 2R_14842572_SNP [dm6]	A	T	5.659e^-4	1	DOWNSTREAM NaPi-T INTERGENIC
X	3178374	X_3178374_SNP [dm3] X_3284341_SNP [dm6]	T	G	5.671e^-4	1	INTRON dnc
2R	16949078	2R_16949078_SNP [dm3] 2R_21061573_SNP [dm6]	G	A	5.672e^-4	1	UTR_3_PRIME mRpL54 UPSTREAM Cht8	TF binding site mE1_TFBS_sens
2L	10152543	2L_10152543_SNP [dm3] 2L_10152543_SNP [dm6]	T	G	5.689e^-4	1	INTRON CG44153 & 1 other
X	20633276	X_20633276_SNP [dm3] X_20762249_SNP [dm6]	T	C	5.696e^-4	1	UTR_3_PRIME shakB
2R	11563736	2R_11563736_SNP [dm3] 2R_15676231_SNP [dm6]	A	T	5.713e^-4	1	UPSTREAM CR45143 & 1 other DOWNSTREAM CG8207 INTRON fus	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7167009	3L_7167009_SNP [dm3] 3L_7173909_SNP [dm6]	T	A	5.720e^-4	1	DOWNSTREAM Dscam2 INTRON Dscam2
2L	6283078	2L_6283078_SNP [dm3] 2L_6283078_SNP [dm6]	G	A	5.721e^-4	1	INTRON Ddr
3R	19809358	3R_19809358_SNP [dm3] 3R_23983636_SNP [dm6]	A	T	5.734e^-4	1	DOWNSTREAM CG31140 EXON CR31451
3R	12831570	3R_12831570_SNP [dm3] 3R_17005848_SNP [dm6]	G	A	5.738e^-4	1	NON_SYNONYMOUS_CODING Irc
2R	10877585	2R_10877585_SNP [dm3] 2R_14990080_SNP [dm6]	T	G	5.740e^-4	1	SYNONYMOUS_CODING pcs INTRON CG7639	TF binding site mE1_TFBS_cad
X	6690568	X_6690568_SNP [dm3] X_6796535_SNP [dm6]	T	A	5.741e^-4	1	UPSTREAM C3G INTRON C3G
2L	19250342	2L_19250342_SNP [dm3] 2L_19250342_SNP [dm6]	C	A	5.742e^-4	1	INTERGENIC
X	4467006	X_4467006_SNP [dm3] X_4572973_SNP [dm6]	G	C	5.747e^-4	1	INTRON CR32773
2R	3337441	2R_3337441_SNP [dm3] 2R_7449936_SNP [dm6]	C	T	5.759e^-4	1	UTR_3_PRIME CG11125 DOWNSTREAM CG11125 INTRON fa2h	TF binding site BDTNP1_TFBS_twi
2R	12393559	2R_12393559_SNP [dm3] 2R_16506054_SNP [dm6]	G	A	5.763e^-4	1	INTRON Sema-2a
2L	15736323	2L_15736323_SNP [dm3] 2L_15736323_SNP [dm6]	A	C	5.770e^-4	1	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21634178	3L_21634178_SNP [dm3] 3L_21641078_SNP [dm6]	C	T	5.771e^-4	1	UTR_5_PRIME Atox1 DOWNSTREAM CG32445	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
X	9331547	X_9331547_SNP [dm3] X_9437514_SNP [dm6]	C	T	5.803e^-4	1	INTRON mgl
3L	22548822	3L_22548822_SNP [dm3] 3L_22555722_SNP [dm6]	G	A	5.811e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	18220381	3L_18220381_SNP [dm3] 3L_18227281_SNP [dm6]	C	T	5.811e^-4	1	INTERGENIC
3R	16315656	3R_16315656_SNP [dm3] 3R_20489934_SNP [dm6]	C	T	5.815e^-4	1	INTERGENIC
3L	12085443	3L_12085443_SNP [dm3] 3L_12092343_SNP [dm6]	A	G	5.818e^-4	1	INTERGENIC
2R	17849258	2R_17849258_SNP [dm3] 2R_21961753_SNP [dm6]	T	A	5.823e^-4	1	INTERGENIC
X	2857210	X_2857210_SNP [dm3] X_2963177_SNP [dm6]	T	G	5.829e^-4	1	INTRON kirre & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12575469	2R_12575469_SNP [dm3] 2R_16687964_SNP [dm6]	T	C	5.833e^-4	1	INTRON CG30463
2R	16523309	2R_16523309_SNP [dm3] 2R_20635804_SNP [dm6]	A	G	5.845e^-4	1	SYNONYMOUS_CODING rig UPSTREAM CG13436	TF binding site mE1_TFBS_cad
X	18047934	X_18047934_SNP [dm3] X_18153901_SNP [dm6]	G	T	5.845e^-4	1	INTERGENIC
3L	6585300	3L_6585300_SNP [dm3] 3L_6592200_SNP [dm6]	C	T	5.849e^-4	1	UTR_3_PRIME CG18769 DOWNSTREAM CG18769
X	601573	X_601573_SNP [dm3] X_707540_SNP [dm6]	G	T	5.865e^-4	1	INTRON sdk
3L	10131514	3L_10131514_SNP [dm3] 3L_10138414_SNP [dm6]	G	C	5.872e^-4	1	INTRON dpr6
2R	10555995	2R_10555995_SNP [dm3] 2R_14668490_SNP [dm6]	G	C	5.884e^-4	1	UTR_5_PRIME CG12866 INTRON CG12866
2L	285072	2L_285072_SNP [dm3] 2L_285072_SNP [dm6]	G	A	5.891e^-4	1	INTRON CG3625	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7033213	3L_7033213_SNP [dm3] 3L_7040113_SNP [dm6]	T	A	5.904e^-4	1	INTRON Mp
X	20252086	X_20252086_SNP [dm3] X_20381059_SNP [dm6]	A	G	5.918e^-4	1	INTERGENIC
2L	19292155	2L_19292155_SNP [dm3] 2L_19292155_SNP [dm6]	T	C	5.924e^-4	1	INTERGENIC
2L	12490612	2L_12490612_SNP [dm3] 2L_12490612_SNP [dm6]	T	A	5.927e^-4	1	INTRON bun
3R	18699450	3R_18699450_SNP [dm3] 3R_22873728_SNP [dm6]	A	C	5.944e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15827697	2R_15827697_SNP [dm3] 2R_19940192_SNP [dm6]	C	G	5.947e^-4	1	EXON CR43421	TF binding site BDTNP1_TFBS_prd
3R	10370703	3R_10370703_SNP [dm3] 3R_14544981_SNP [dm6]	G	T	5.959e^-4	1	INTRON Pde6
2L	16256441	2L_16256441_SNP [dm3] 2L_16256441_SNP [dm6]	C	T	5.962e^-4	1	UPSTREAM PRL-1 INTRON PRL-1	TF binding site mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16948672	2R_16948672_SNP [dm3] 2R_21061167_SNP [dm6]	G	A	5.983e^-4	1	SYNONYMOUS_CODING mRpL54 UPSTREAM CG15653 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	13626377	2L_13626377_SNP [dm3] 2L_13626377_SNP [dm6]	C	A	5.989e^-4	1	INTRON kuz
2L	10320784	2L_10320784_SNP [dm3] 2L_10320784_SNP [dm6]	C	T	5.990e^-4	1	INTRON CG5381
2R	12982766	2R_12982766_SNP [dm3] 2R_17095261_SNP [dm6]	A	T	5.990e^-4	1	INTRON GstS1	TF binding site mE1_TFBS_cad
3L	2482496	3L_2482496_DEL [dm3] 3L_2482496_DEL [dm6]	AA	A	5.995e^-4	1	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9507803	3L_9507803_SNP [dm3] 3L_9514703_SNP [dm6]	G	A	6.011e^-4	1	SYNONYMOUS_CODING CG33700 UPSTREAM CR33701
3L	9257251	3L_9257251_SNP [dm3] 3L_9264151_SNP [dm6]	T	A	6.015e^-4	1	INTRON GluRIB
3R	24800662	3R_24800662_SNP [dm3] 3R_28974940_SNP [dm6]	C	T	6.020e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	598536	X_598536_SNP [dm3] X_704503_SNP [dm6]	A	T	6.021e^-4	1	INTRON sdk
3R	19907289	3R_19907289_SNP [dm3] 3R_24081567_SNP [dm6]	C	A	6.025e^-4	1	INTRON 4EHP
2R	17868306	2R_17868306_SNP [dm3] 2R_21980801_SNP [dm6]	G	T	6.025e^-4	1	SYNONYMOUS_CODING Gr58a
2L	15245047	2L_15245047_SNP [dm3] 2L_15245047_SNP [dm6]	G	A	6.028e^-4	1	INTRON ZnT35C
3L	17259506	3L_17259506_DEL [dm3] 3L_17266406_DEL [dm6]	GCAATGCG	G	6.031e^-4	1	INTERGENIC
X	5200808	X_5200808_SNP [dm3] X_5306775_SNP [dm6]	G	A	6.047e^-4	1	SYNONYMOUS_CODING CG17764 DOWNSTREAM CG42749 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	17972483	3L_17972483_SNP [dm3] 3L_17979383_SNP [dm6]	A	T	6.047e^-4	1	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
2L	1630232	2L_1630232_SNP [dm3] 2L_1630232_SNP [dm6]	G	A	6.049e^-4	1	INTERGENIC
3R	24133586	3R_24133586_SNP [dm3] 3R_28307864_SNP [dm6]	C	A	6.053e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14296769	2R_14296769_SNP [dm3] 2R_18409264_SNP [dm6]	G	A	6.057e^-4	1	SYNONYMOUS_CODING GstE9 DOWNSTREAM GstE8 & 1 other	TF binding site mE1_TFBS_sens
X	542051	X_542051_SNP [dm3] X_648018_SNP [dm6]	C	T	6.066e^-4	1	UTR_3_PRIME Roc1a DOWNSTREAM Hmt4-20	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	1668666	X_1668666_INS [dm3] X_1774633_INS [dm6]	G	GGCTTGCGAATCGGTGGGAG...	6.072e^-4	1	UTR_5_PRIME Adar INTRON Adar & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	22378402	3L_22378402_SNP [dm3] 3L_22385302_SNP [dm6]	T	A	6.089e^-4	1	INTRON Ten-m	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	4978502	2L_4978502_SNP [dm3] 2L_4978502_SNP [dm6]	G	A	6.110e^-4	1	UTR_3_PRIME CG3792 & 1 other
3L	12613399	3L_12613399_SNP [dm3] 3L_12620299_SNP [dm6]	C	T	6.113e^-4	1	SYNONYMOUS_CODING caup	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10514018	3R_10514018_SNP [dm3] 3R_14688296_SNP [dm6]	C	G	6.118e^-4	1	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi
2R	17614831	2R_17614831_SNP [dm3] 2R_21727326_SNP [dm6]	G	A	6.141e^-4	1	DOWNSTREAM CR44750 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19565223	2R_19565223_SNP [dm3] 2R_23677700_SNP [dm6]	C	T	6.145e^-4	1	INTRON Pde8	TF binding site mE1_TFBS_cad
2R	14322703	2R_14322703_SNP [dm3] 2R_18435198_SNP [dm6]	T	A	6.151e^-4	1	INTRON CG30118	TF binding site BDTNP1_TFBS_twi
X	16594435	X_16594435_SNP [dm3] X_16700402_SNP [dm6]	G	A	6.170e^-4	1	UPSTREAM CG9676 DOWNSTREAM spheroide INTRON CG4678
X	16594436	X_16594436_SNP [dm3] X_16700403_SNP [dm6]	A	G	6.170e^-4	1	UPSTREAM CG9676 DOWNSTREAM spheroide INTRON CG4678
X	6456062	X_6456062_SNP [dm3] X_6562029_SNP [dm6]	T	C	6.178e^-4	1	SYNONYMOUS_CODING CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7272655	3R_7272655_SNP [dm3] 3R_11446933_SNP [dm6]	C	T	6.191e^-4	1	UPSTREAM sals INTRON CG17230 & 1 other
2L	7143617	2L_7143617_SNP [dm3] 2L_7143617_SNP [dm6]	A	G	6.192e^-4	1	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17479740	3L_17479740_SNP [dm3] 3L_17486640_SNP [dm6]	A	T	6.194e^-4	1	UPSTREAM Oatp74D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17614345	2R_17614345_SNP [dm3] 2R_21726840_SNP [dm6]	G	T	6.202e^-4	1	DOWNSTREAM CR44750 INTERGENIC
3L	14631653	3L_14631653_SNP [dm3] 3L_14638553_SNP [dm6]	G	A	6.202e^-4	1	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8923237	3R_8923237_SNP [dm3] 3R_13097515_SNP [dm6]	A	C	6.203e^-4	1	INTRON timeout
2R	14294220	2R_14294220_SNP [dm3] 2R_18406715_SNP [dm6]	A	T	6.214e^-4	1	UTR_3_PRIME GstE6 UPSTREAM GstE7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	2122746	3R_2122746_SNP [dm3] 3R_6297024_SNP [dm6]	G	C	6.214e^-4	1	INTERGENIC
X	592654	X_592654_SNP [dm3] X_698621_SNP [dm6]	T	C	6.216e^-4	1	INTRON sdk
3L	2375492	3L_2375492_SNP [dm3] 3L_2375492_SNP [dm6]	A	T	6.228e^-4	1	SYNONYMOUS_CODING CG9004 DOWNSTREAM CG15877	TF binding site mE1_TFBS_sens
3R	27461465	3R_27461465_SNP [dm3] 3R_31635743_SNP [dm6]	T	G	6.235e^-4	1	INTRON kek6	TF binding site mE1_TFBS_chinmo
2R	20380639	2R_20380639_SNP [dm3] 2R_24493116_SNP [dm6]	T	A	6.242e^-4	1	UPSTREAM CG13589 DOWNSTREAM CG13590 INTERGENIC
3R	18904144	3R_18904144_SNP [dm3] 3R_23078422_SNP [dm6]	T	C	6.242e^-4	1	INTRON CG13830
2R	16841712	2R_16841712_SNP [dm3] 2R_20954207_SNP [dm6]	G	C	6.244e^-4	1	DOWNSTREAM hbn INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	1274310	2L_1274310_SNP [dm3] 2L_1274310_SNP [dm6]	C	T	6.260e^-4	1	INTRON robo3
X	3578179	X_3578179_DEL [dm3] X_3684146_DEL [dm6]	ATA	A	6.268e^-4	1	INTRON Mnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18397299	X_18397299_SNP [dm3] X_18503266_SNP [dm6]	A	G	6.270e^-4	1	SYNONYMOUS_CODING Wnt5	TF binding site mE1_TFBS_cad
2R	11564249	2R_11564249_SNP [dm3] 2R_15676744_SNP [dm6]	T	A	6.271e^-4	1	UPSTREAM fus DOWNSTREAM CG8207 EXON CR45143	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3940013	3L_3940013_SNP [dm3] 3L_3940013_SNP [dm6]	G	C	6.278e^-4	1	SYNONYMOUS_CODING CG12766 UPSTREAM CR43916 DOWNSTREAM CG10863
3L	23048784	3L_23048784_SNP [dm3] 3L_23055684_SNP [dm6]	T	C	6.279e^-4	1	INTERGENIC
2R	15775624	2R_15775624_SNP [dm3] 2R_19888119_SNP [dm6]	A	G	6.282e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	11418144	3R_11418144_DEL [dm3] 3R_15592422_DEL [dm6]	CC	C	6.302e^-4	1	INTERGENIC
2R	4513915	2R_4513915_SNP [dm3] 2R_8626410_SNP [dm6]	G	C	6.311e^-4	1	UTR_3_PRIME beta3GalTII DOWNSTREAM Vps25	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9693951	3L_9693951_SNP [dm3] 3L_9700851_SNP [dm6]	C	T	6.325e^-4	1	SYNONYMOUS_CODING CG6761 DOWNSTREAM UbcD4	TF binding site mE1_TFBS_cad
2R	11039807	2R_11039807_SNP [dm3] 2R_15152302_SNP [dm6]	G	T	6.340e^-4	1	INTERGENIC
2R	19399936	2R_19399936_SNP [dm3] 2R_23512413_SNP [dm6]	G	A	6.345e^-4	1	UPSTREAM CG3906 INTERGENIC	TF binding site mE1_TFBS_cad
3L	13732486	3L_13732486_SNP [dm3] 3L_13739386_SNP [dm6]	C	A	6.353e^-4	1	INTRON bru-3
3R	23601279	3R_23601279_SNP [dm3] 3R_27775557_SNP [dm6]	A	G	6.360e^-4	1	INTRON CG34353	TF binding site mE1_TFBS_chinmo
2L	10125752	2L_10125752_SNP [dm3] 2L_10125752_SNP [dm6]	G	A	6.360e^-4	1	DOWNSTREAM CG34109 INTRON CG44153
3L	11029125	3L_11029125_INS [dm3] 3L_11036025_INS [dm6]	T	TTATACCAGAGCT...	6.365e^-4	1	DOWNSTREAM CG43693 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15508370	2R_15508370_DEL [dm3] 2R_19620865_DEL [dm6]	AA	A	6.382e^-4	1	INTRON sm
2R	16373486	2R_16373486_SNP [dm3] 2R_20485981_SNP [dm6]	A	G	6.385e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12581163	2R_12581163_SNP [dm3] 2R_16693658_SNP [dm6]	T	C	6.386e^-4	1	UTR_3_PRIME CG5210 INTRON CG30463	TF binding site mE1_TFBS_cad
2L	10900668	2L_10900668_SNP [dm3] 2L_10900668_SNP [dm6]	G	A	6.387e^-4	1	UTR_3_PRIME CG14070
3L	14257611	3L_14257611_SNP [dm3] 3L_14264511_SNP [dm6]	T	A	6.389e^-4	1	INTERGENIC
3L	11510891	3L_11510891_SNP [dm3] 3L_11517791_SNP [dm6]	G	A	6.398e^-4	1	NON_SYNONYMOUS_CODING CG7512	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	19876067	X_19876067_SNP [dm3] X_19982034_SNP [dm6]	A	G	6.402e^-4	1	INTERGENIC
3L	7126052	3L_7126052_SNP [dm3] 3L_7132952_SNP [dm6]	A	T	6.409e^-4	1	INTRON Dbi	TF binding site BDTNP1_TFBS_sna
3L	1951478	3L_1951478_SNP [dm3] 3L_1951478_SNP [dm6]	G	T	6.415e^-4	1	SYNONYMOUS_CODING mv	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14906690	2R_14906690_SNP [dm3] 2R_19019185_SNP [dm6]	T	C	6.424e^-4	1	INTERGENIC
2R	19984341	2R_19984341_SNP [dm3] 2R_24096818_SNP [dm6]	C	T	6.428e^-4	1	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	17550707	2L_17550707_SNP [dm3] 2L_17550707_SNP [dm6]	G	C	6.436e^-4	1	INTERGENIC
3L	17775686	3L_17775686_SNP [dm3] 3L_17782586_SNP [dm6]	A	G	6.437e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	15465672	3L_15465672_SNP [dm3] 3L_15472572_SNP [dm6]	C	T	6.445e^-4	1	UTR_3_PRIME CG7804
2L	7140587	2L_7140587_SNP [dm3] 2L_7140587_SNP [dm6]	A	G	6.449e^-4	1	INTRON Pvf3
2L	7140590	2L_7140590_SNP [dm3] 2L_7140590_SNP [dm6]	G	A	6.449e^-4	1	INTRON Pvf3
3L	4515068	3L_4515068_SNP [dm3] 3L_4515068_SNP [dm6]	C	T	6.462e^-4	1	SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_chinmo
2L	13709634	2L_13709634_SNP [dm3] 2L_13709634_SNP [dm6]	C	A	6.481e^-4	1	NON_SYNONYMOUS_CODING CG7311 UTR_3_PRIME CG7311 INTRON CG31814
2L	1696470	2L_1696470_SNP [dm3] 2L_1696470_SNP [dm6]	C	A	6.482e^-4	1	SYNONYMOUS_CODING chinmo UTR_3_PRIME chinmo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	22465755	3L_22465755_SNP [dm3] 3L_22472655_SNP [dm6]	T	C	6.487e^-4	1	SYNONYMOUS_CODING CG11426	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12837364	3R_12837364_SNP [dm3] 3R_17011642_SNP [dm6]	G	A	6.488e^-4	1	SYNONYMOUS_CODING CG8907	TF binding site mE1_TFBS_cad
X	1408422	X_1408422_SNP [dm3] X_1514389_SNP [dm6]	A	T	6.488e^-4	1	INTRON inc	transposable element FlyBase
3L	7146013	3L_7146013_SNP [dm3] 3L_7152913_SNP [dm6]	G	C	6.492e^-4	1	INTRON corn
3R	18565472	3R_18565472_SNP [dm3] 3R_22739750_SNP [dm6]	C	A	6.496e^-4	1	SYNONYMOUS_CODING Dcr-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7560654	2R_7560654_SNP [dm3] 2R_11673149_SNP [dm6]	T	C	6.500e^-4	1	SYNONYMOUS_CODING Tret1-1 INTRON Roc2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	18390042	2R_18390042_SNP [dm3] 2R_22502537_SNP [dm6]	C	A	6.509e^-4	1	INTRON px

By genomic position
Variant impact
Gene name

mn_Longevity phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results