DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.895e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.0072	0.0829
In_2L_t	5.8331	0.0541

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2118 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

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Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	6766028	3L_6766028_SNP [dm3] 3L_6772928_SNP [dm6]	G	A	6.010e^-7	0.862	INTERGENIC
2L	10055248	2L_10055248_SNP [dm3] 2L_10055248_SNP [dm6]	G	A	2.611e^-6	0.862	SYNONYMOUS_CODING Cpr31A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10751601	2L_10751601_SNP [dm3] 2L_10751601_SNP [dm6]	T	A	2.993e^-6	0.862	INTRON CG17124	TF binding site mE1_TFBS_cad
2R	11340675	2R_11340675_INS [dm3] 2R_15453170_INS [dm6]	A	ACA	4.438e^-6	0.862	INTRON CG43729
2R	4684924	2R_4684924_SNP [dm3] 2R_8797419_SNP [dm6]	G	A	5.601e^-6	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6757322	2R_6757322_SNP [dm3] 2R_10869817_SNP [dm6]	C	T	5.683e^-6	0.862	INTRON CG30015
2L	10054758	2L_10054758_SNP [dm3] 2L_10054758_SNP [dm6]	A	T	6.774e^-6	0.862	DOWNSTREAM CR44875 INTRON Cpr31A	TF binding site mE1_TFBS_cad mE1_TFBS_jumu
2R	11876343	2R_11876343_DEL [dm3] 2R_15988838_DEL [dm6]	TCA	T	7.052e^-6	0.862	DOWNSTREAM CR45021 & 1 other INTRON Strn-Mlck
3L	11431770	3L_11431770_SNP [dm3] 3L_11438670_SNP [dm6]	A	T	8.694e^-6	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	12613916	X_12613916_DEL [dm3] X_12719883_DEL [dm6]	AA	A	8.807e^-6	0.862	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12613919	X_12613919_SNP [dm3] X_12719886_SNP [dm6]	T	G	9.820e^-6	0.862	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12613909	X_12613909_SNP [dm3] X_12719876_SNP [dm6]	T	C	9.843e^-6	0.862	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	3645642	X_3645642_SNP [dm3] X_3751609_SNP [dm6]	G	C	1.010e^-5	0.862	INTRON tlk
3L	10506720	3L_10506720_SNP [dm3] 3L_10513620_SNP [dm6]	C	T	1.014e^-5	0.862	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl
3L	16171290	3L_16171290_SNP [dm3] 3L_16178190_SNP [dm6]	C	T	1.205e^-5	0.862	UPSTREAM CR45755 DOWNSTREAM CR45754 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19952180	3R_19952180_SNP [dm3] 3R_24126458_SNP [dm6]	T	C	1.205e^-5	0.862	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14788150	3R_14788150_SNP [dm3] 3R_18962428_SNP [dm6]	A	G	1.293e^-5	0.862	INTRON CG42613 & 1 other
3R	22957555	3R_22957555_SNP [dm3] 3R_27131833_SNP [dm6]	G	A	1.349e^-5	0.862	INTRON CG6051	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18267502	3R_18267502_SNP [dm3] 3R_22441780_SNP [dm6]	C	T	1.359e^-5	0.862	SYNONYMOUS_CODING CG12499
3R	18267511	3R_18267511_SNP [dm3] 3R_22441789_SNP [dm6]	C	T	1.359e^-5	0.862	SYNONYMOUS_CODING CG12499
X	10150281	X_10150281_SNP [dm3] X_10256248_SNP [dm6]	G	A	1.447e^-5	0.862	START_GAINED Hk UTR_5_PRIME Hk UPSTREAM CR43959 INTRON Hk
2R	6994551	2R_6994551_SNP [dm3] 2R_11107046_SNP [dm6]	G	A	1.457e^-5	0.862	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6994558	2R_6994558_DEL [dm3] 2R_11107053_DEL [dm6]	AATAC	A	1.457e^-5	0.862	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	7285417	3R_7285417_SNP [dm3] 3R_11459695_SNP [dm6]	G	T	1.482e^-5	0.862	INTRON CG17230 & 1 other
2R	9999719	2R_9999719_SNP [dm3] 2R_14112214_SNP [dm6]	A	G	1.492e^-5	0.862	INTRON Prosap
3R	7286683	3R_7286683_SNP [dm3] 3R_11460961_SNP [dm6]	T	A	1.567e^-5	0.862	UPSTREAM PGRP-LB INTRON CG17230
3L	1850569	3L_1850569_SNP [dm3] 3L_1850569_SNP [dm6]	T	C	1.604e^-5	0.862	DOWNSTREAM CG13936 INTERGENIC
3R	14939862	3R_14939862_SNP [dm3] 3R_19114140_SNP [dm6]	T	C	1.611e^-5	0.862	INTRON CG6040	transposable element FlyBase
3R	11475807	3R_11475807_SNP [dm3] 3R_15650085_SNP [dm6]	A	G	1.661e^-5	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	16428832	2L_16428832_SNP [dm3] 2L_16428832_SNP [dm6]	T	C	1.743e^-5	0.862	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19951577	3R_19951577_SNP [dm3] 3R_24125855_SNP [dm6]	C	A	1.808e^-5	0.862	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20586692	3R_20586692_SNP [dm3] 3R_24760970_SNP [dm6]	G	C	1.827e^-5	0.862	UTR_3_PRIME AstA DOWNSTREAM asp	TF binding site mE1_TFBS_cad
3L	1071914	3L_1071914_SNP [dm3] 3L_1071914_SNP [dm6]	A	C	1.860e^-5	0.862	INTRON bab1
X	15421596	X_15421596_SNP [dm3] X_15527563_SNP [dm6]	C	T	1.866e^-5	0.862	INTRON Ac13E
X	2487721	X_2487721_SNP [dm3] X_2593688_SNP [dm6]	T	C	1.884e^-5	0.862	UTR_5_PRIME egh INTRON egh	TF binding site mE1_TFBS_sens
3R	21353362	3R_21353362_SNP [dm3] 3R_25527640_SNP [dm6]	T	A	1.918e^-5	0.862	INTRON msi
2R	8527327	2R_8527327_SNP [dm3] 2R_12639822_SNP [dm6]	T	C	2.016e^-5	0.862	SPLICE_SITE_REGION Iswi DOWNSTREAM CG8785 INTRON Iswi	TF binding site mE1_TFBS_cad
3R	12152709	3R_12152709_SNP [dm3] 3R_16326987_SNP [dm6]	G	A	2.138e^-5	0.862	SYNONYMOUS_CODING CG17929 UPSTREAM CG17930 INTRON Sulf1
2R	9524402	2R_9524402_SNP [dm3] 2R_13636897_SNP [dm6]	A	T	2.169e^-5	0.862	INTRON fas
3L	18442927	3L_18442927_SNP [dm3] 3L_18449827_SNP [dm6]	A	G	2.264e^-5	0.862	INTERGENIC
2R	11340875	2R_11340875_SNP [dm3] 2R_15453370_SNP [dm6]	C	T	2.293e^-5	0.862	INTRON CG43729
2R	17277601	2R_17277601_SNP [dm3] 2R_21390096_SNP [dm6]	C	T	2.411e^-5	0.862	SYNONYMOUS_CODING Acox57D-d DOWNSTREAM Acox57D-p
2L	11574489	2L_11574489_SNP [dm3] 2L_11574489_SNP [dm6]	G	A	2.475e^-5	0.862	INTERGENIC
2R	19297196	2R_19297196_SNP [dm3] 2R_23409673_SNP [dm6]	C	G	2.491e^-5	0.862	INTERGENIC
2R	20813753	2R_20813753_SNP [dm3] 2R_24926230_SNP [dm6]	T	A	2.495e^-5	0.862	INTRON pain
2L	10590285	2L_10590285_SNP [dm3] 2L_10590285_SNP [dm6]	C	T	2.496e^-5	0.862	INTRON Trim9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	10310816	3L_10310816_SNP [dm3] 3L_10317716_SNP [dm6]	A	C	2.515e^-5	0.862	INTERGENIC
2R	11339784	2R_11339784_SNP [dm3] 2R_15452279_SNP [dm6]	T	A	2.590e^-5	0.862	INTRON CG43729
3L	1870613	3L_1870613_SNP [dm3] 3L_1870613_SNP [dm6]	T	C	2.692e^-5	0.862	SYNONYMOUS_CODING CG13924 DOWNSTREAM dre4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19951844	3R_19951844_SNP [dm3] 3R_24126122_SNP [dm6]	T	G	2.711e^-5	0.862	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8526108	2R_8526108_SNP [dm3] 2R_12638603_SNP [dm6]	T	C	2.735e^-5	0.862	SYNONYMOUS_CODING Iswi	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10588603	3R_10588603_DEL [dm3] 3R_14762881_DEL [dm6]	TT	T	2.814e^-5	0.862	INTRON jvl
3R	20586682	3R_20586682_SNP [dm3] 3R_24760960_SNP [dm6]	A	T	2.833e^-5	0.862	UTR_3_PRIME AstA DOWNSTREAM asp	TF binding site mE1_TFBS_cad
2R	7465507	2R_7465507_SNP [dm3] 2R_11578002_SNP [dm6]	G	A	2.835e^-5	0.862	UTR_3_PRIME tou DOWNSTREAM tou
2L	881046	2L_881046_SNP [dm3] 2L_881046_SNP [dm6]	T	C	2.854e^-5	0.862	SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad
3R	27085595	3R_27085595_SNP [dm3] 3R_31259873_SNP [dm6]	T	C	2.875e^-5	0.862	SYNONYMOUS_CODING CG3669 UPSTREAM CG18672
X	7434765	X_7434765_SNP [dm3] X_7540732_SNP [dm6]	C	T	2.885e^-5	0.862	INTRON CG32719
X	7435099	X_7435099_SNP [dm3] X_7541066_SNP [dm6]	T	C	2.885e^-5	0.862	INTRON CG32719
X	7435896	X_7435896_SNP [dm3] X_7541863_SNP [dm6]	C	T	2.892e^-5	0.862	INTRON CG32719	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad
3L	18443071	3L_18443071_SNP [dm3] 3L_18449971_SNP [dm6]	T	C	2.923e^-5	0.862	INTERGENIC
X	2488174	X_2488174_SNP [dm3] X_2594141_SNP [dm6]	A	G	2.935e^-5	0.862	INTRON egh
3R	7285161	3R_7285161_SNP [dm3] 3R_11459439_SNP [dm6]	A	G	2.937e^-5	0.862	INTRON CG17230 & 1 other
3L	15971401	3L_15971401_SNP [dm3] 3L_15978301_SNP [dm6]	G	A	2.939e^-5	0.862	NON_SYNONYMOUS_CODING CG17029 UPSTREAM CG17028 INTRON brm
2L	10635669	2L_10635669_SNP [dm3] 2L_10635669_SNP [dm6]	C	T	3.002e^-5	0.862	INTRON CG7329
3L	14390234	3L_14390234_SNP [dm3] 3L_14397134_SNP [dm6]	T	C	3.030e^-5	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19517064	X_19517064_SNP [dm3] X_19623031_SNP [dm6]	G	A	3.123e^-5	0.862	UTR_5_PRIME NAA20 UPSTREAM MKP-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9274440	3R_9274440_SNP [dm3] 3R_13448718_SNP [dm6]	T	G	3.141e^-5	0.862	INTERGENIC
2L	16551549	2L_16551549_SNP [dm3] 2L_16551549_SNP [dm6]	A	G	3.223e^-5	0.862	INTRON CG42389
2R	18026957	2R_18026957_SNP [dm3] 2R_22139452_SNP [dm6]	T	C	3.248e^-5	0.862	UPSTREAM gom DOWNSTREAM CG11269 INTRON a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3645633	X_3645633_SNP [dm3] X_3751600_SNP [dm6]	A	G	3.250e^-5	0.862	INTRON tlk
2R	16078097	2R_16078097_SNP [dm3] 2R_20190592_SNP [dm6]	C	T	3.293e^-5	0.862	INTERGENIC
2L	6638731	2L_6638731_SNP [dm3] 2L_6638731_SNP [dm6]	T	A	3.311e^-5	0.862	SYNONYMOUS_CODING CG31635	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12835291	3L_12835291_SNP [dm3] 3L_12842191_SNP [dm6]	G	A	3.445e^-5	0.877	INTRON CG10960	TF binding site mE1_TFBS_zfh1
2L	19383526	2L_19383526_SNP [dm3] 2L_19383526_SNP [dm6]	C	A	3.523e^-5	0.877	UTR_3_PRIME fon DOWNSTREAM CG17350
3R	18267546	3R_18267546_SNP [dm3] 3R_22441824_SNP [dm6]	G	A	3.569e^-5	0.877	SYNONYMOUS_CODING CG12499
3R	3351885	3R_3351885_SNP [dm3] 3R_7526163_SNP [dm6]	T	C	3.877e^-5	0.877	UPSTREAM alpha-Est4aPsi INTRON alpha-Est6
2R	17641639	2R_17641639_DEL [dm3] 2R_21754134_DEL [dm6]	TGCCGTCTCTTTTT...	T	3.908e^-5	0.877	INTERGENIC
2L	11494827	2L_11494827_SNP [dm3] 2L_11494827_SNP [dm6]	A	G	3.953e^-5	0.877	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	16174409	3L_16174409_SNP [dm3] 3L_16181309_SNP [dm6]	G	A	4.012e^-5	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10054079	2L_10054079_SNP [dm3] 2L_10054079_SNP [dm6]	T	C	4.017e^-5	0.877	UPSTREAM Cpr31A EXON CR44875
3L	18443052	3L_18443052_SNP [dm3] 3L_18449952_SNP [dm6]	C	A	4.031e^-5	0.877	INTERGENIC
3L	10352598	3L_10352598_SNP [dm3] 3L_10359498_SNP [dm6]	T	C	4.041e^-5	0.877	EXON CR44327
3R	17690116	3R_17690116_SNP [dm3] 3R_21864394_SNP [dm6]	T	G	4.161e^-5	0.877	UPSTREAM lsn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	18693129	X_18693129_SNP [dm3] X_18799096_SNP [dm6]	T	C	4.199e^-5	0.877	INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15421658	X_15421658_SNP [dm3] X_15527625_SNP [dm6]	A	G	4.366e^-5	0.877	INTRON Ac13E
2R	14399446	2R_14399446_SNP [dm3] 2R_18511941_SNP [dm6]	T	C	4.373e^-5	0.877	INTERGENIC
X	12562681	X_12562681_SNP [dm3] X_12668648_SNP [dm6]	A	G	4.375e^-5	0.877	INTRON Tis11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	974004	3L_974004_DEL [dm3] 3L_974004_DEL [dm6]	CACTCACGATTGGCATTGGA...	C	4.436e^-5	0.877	INTRON Glut1
3L	18442919	3L_18442919_SNP [dm3] 3L_18449819_SNP [dm6]	A	G	4.497e^-5	0.877	INTERGENIC
3R	15152910	3R_15152910_INS [dm3] 3R_19327188_INS [dm6]	A	AA	4.548e^-5	0.877	UPSTREAM Dl & 1 other EXON CR44175
2R	6750273	2R_6750273_SNP [dm3] 2R_10862768_SNP [dm6]	G	C	4.568e^-5	0.877	INTRON CG30015
3L	5591956	3L_5591956_SNP [dm3] 3L_5598856_SNP [dm6]	G	T	4.617e^-5	0.877	SYNONYMOUS_CODING CG10591	TF binding site mE1_TFBS_chinmo
3R	7285397	3R_7285397_DEL [dm3] 3R_11459675_DEL [dm6]	GGGTTTACTTTG...	G	4.820e^-5	0.877	INTRON CG17230 & 1 other
3R	3340654	3R_3340654_SNP [dm3] 3R_7514932_SNP [dm6]	C	G	4.912e^-5	0.877	INTRON alpha-Est8
X	5878901	X_5878901_SNP [dm3] X_5984868_SNP [dm6]	T	G	4.975e^-5	0.877	SYNONYMOUS_CODING Grip	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11348958	3R_11348958_SNP [dm3] 3R_15523236_SNP [dm6]	G	C	4.983e^-5	0.877	INTERGENIC
2L	10590300	2L_10590300_SNP [dm3] 2L_10590300_SNP [dm6]	G	T	4.995e^-5	0.877	INTRON Trim9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	6750265	2R_6750265_SNP [dm3] 2R_10862760_SNP [dm6]	T	C	5.031e^-5	0.877	INTRON CG30015
3L	6554215	3L_6554215_SNP [dm3] 3L_6561115_SNP [dm6]	T	A	5.142e^-5	0.877	INTRON CG18769
2L	20045090	2L_20045090_SNP [dm3] 2L_20045090_SNP [dm6]	G	A	5.247e^-5	0.877	INTRON sNPF	transposable element FlyBase

Showing 1 to 100 of 1,000 entries

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GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.081e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.07627
In_3R_P	0.02632

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.2241	0.0726
In_3R_P	6.8214	0.033

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2110 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	19983134	2R_19983134_SNP [dm3] 2R_24095611_SNP [dm6]	A	C	2.475e^-7	0.281	NON_SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10938597	2L_10938597_SNP [dm3] 2L_10938597_SNP [dm6]	T	C	3.000e^-7	0.281	DOWNSTREAM CG14072 INTRON dpr2	TF binding site mE1_TFBS_HSA
2L	10938598	2L_10938598_SNP [dm3] 2L_10938598_SNP [dm6]	G	A	5.383e^-7	0.291	DOWNSTREAM CG14072 INTRON dpr2	TF binding site mE1_TFBS_HSA
2R	19983135	2R_19983135_SNP [dm3] 2R_24095612_SNP [dm6]	G	A	6.205e^-7	0.291	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18485664	2R_18485664_SNP [dm3] 2R_22598159_SNP [dm6]	A	T	1.174e^-6	0.417	INTRON CG4269	TF binding site mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3R	13454440	3R_13454440_SNP [dm3] 3R_17628718_SNP [dm6]	T	G	1.446e^-6	0.417	SYNONYMOUS_CODING CG14325 DOWNSTREAM tRNA:V4:90C
2R	14587720	2R_14587720_SNP [dm3] 2R_18700215_SNP [dm6]	T	C	1.555e^-6	0.417	SYNONYMOUS_CODING Sik3
3R	13454504	3R_13454504_SNP [dm3] 3R_17628782_SNP [dm6]	T	C	1.921e^-6	0.434	SYNONYMOUS_CODING CG14325 DOWNSTREAM tRNA:V4:90C
3L	6766028	3L_6766028_SNP [dm3] 3L_6772928_SNP [dm6]	G	A	2.082e^-6	0.434	INTERGENIC
3R	14788150	3R_14788150_SNP [dm3] 3R_18962428_SNP [dm6]	A	G	2.987e^-6	0.556	INTRON CG42613 & 1 other
3L	13019927	3L_13019927_SNP [dm3] 3L_13026827_SNP [dm6]	G	A	3.584e^-6	0.556	UPSTREAM Zmynd10 INTERGENIC
2L	11931180	2L_11931180_SNP [dm3] 2L_11931180_SNP [dm6]	A	G	3.825e^-6	0.556	INTERGENIC
3R	12457693	3R_12457693_SNP [dm3] 3R_16631971_SNP [dm6]	C	T	4.216e^-6	0.556	SYNONYMOUS_CODING Fas1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16456548	2R_16456548_SNP [dm3] 2R_20569043_SNP [dm6]	A	G	4.359e^-6	0.556	INTRON qsm
2R	4879378	2R_4879378_SNP [dm3] 2R_8991873_SNP [dm6]	A	T	4.446e^-6	0.556	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	10932457	2L_10932457_SNP [dm3] 2L_10932457_SNP [dm6]	G	A	5.540e^-6	0.61	INTRON dpr2
2R	4866201	2R_4866201_SNP [dm3] 2R_8978696_SNP [dm6]	T	A	5.686e^-6	0.61	INTRON CG8213	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5358880	X_5358880_SNP [dm3] X_5464847_SNP [dm6]	G	A	5.853e^-6	0.61	UTR_5_PRIME SPR INTRON SPR
3R	9130494	3R_9130494_SNP [dm3] 3R_13304772_SNP [dm6]	C	T	6.461e^-6	0.627	START_GAINED CG32473 UTR_5_PRIME CG32473 DOWNSTREAM CG43208 INTRON CG32473	TF binding site mE1_TFBS_Trl
2R	8449579	2R_8449579_SNP [dm3] 2R_12562074_SNP [dm6]	G	T	6.810e^-6	0.627	UTR_5_PRIME CG30056 INTRON fra
2R	4879366	2R_4879366_DEL [dm3] 2R_8991861_DEL [dm6]	TTTTACAAA	T	7.301e^-6	0.627	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	19901018	2R_19901018_SNP [dm3] 2R_24013495_SNP [dm6]	C	A	7.551e^-6	0.627	INTRON Unc-89
2R	4879377	2R_4879377_SNP [dm3] 2R_8991872_SNP [dm6]	T	C	7.690e^-6	0.627	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	6757322	2R_6757322_SNP [dm3] 2R_10869817_SNP [dm6]	C	T	1.024e^-5	0.687	INTRON CG30015
2R	14587777	2R_14587777_SNP [dm3] 2R_18700272_SNP [dm6]	G	A	1.029e^-5	0.687	SYNONYMOUS_CODING Sik3
2R	17149670	2R_17149670_SNP [dm3] 2R_21262165_SNP [dm6]	T	C	1.091e^-5	0.687	INTRON Rgk3
X	4065869	X_4065869_SNP [dm3] X_4171836_SNP [dm6]	T	C	1.119e^-5	0.687	INTRON Fas2
X	4166673	X_4166673_SNP [dm3] X_4272640_SNP [dm6]	G	A	1.146e^-5	0.687	INTERGENIC
2R	8449604	2R_8449604_SNP [dm3] 2R_12562099_SNP [dm6]	G	T	1.249e^-5	0.687	UTR_5_PRIME CG30056 INTRON fra
2R	19901003	2R_19901003_SNP [dm3] 2R_24013480_SNP [dm6]	T	C	1.302e^-5	0.687	INTRON Unc-89
2L	10928342	2L_10928342_SNP [dm3] 2L_10928342_SNP [dm6]	T	A	1.335e^-5	0.687	INTRON dpr2
2R	9774607	2R_9774607_SNP [dm3] 2R_13887102_SNP [dm6]	T	A	1.394e^-5	0.687	NON_SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
3R	17085033	3R_17085033_SNP [dm3] 3R_21259311_SNP [dm6]	G	A	1.432e^-5	0.687	INTRON ETHR	TF binding site mE1_TFBS_cad
2L	10928301	2L_10928301_DEL [dm3] 2L_10928301_DEL [dm6]	ATA	C	1.488e^-5	0.687	INTRON dpr2
2L	10928308	2L_10928308_SNP [dm3] 2L_10928308_SNP [dm6]	T	G	1.488e^-5	0.687	INTRON dpr2
2L	10928310	2L_10928310_DEL [dm3] 2L_10928310_DEL [dm6]	TGATTGTTCAGGAATTC...	T	1.488e^-5	0.687	INTRON dpr2
2L	10928352	2L_10928352_SNP [dm3] 2L_10928352_SNP [dm6]	A	T	1.488e^-5	0.687	INTRON dpr2
2R	17296002	2R_17296002_SNP [dm3] 2R_21408497_SNP [dm6]	A	G	1.518e^-5	0.687	INTRON Sdc
3R	8687170	3R_8687170_SNP [dm3] 3R_12861448_SNP [dm6]	T	C	1.551e^-5	0.687	INTERGENIC
2L	10928328	2L_10928328_SNP [dm3] 2L_10928328_SNP [dm6]	G	C	1.600e^-5	0.687	INTRON dpr2
3L	10243200	3L_10243200_SNP [dm3] 3L_10250100_SNP [dm6]	C	T	1.646e^-5	0.687	INTERGENIC
3R	8679309	3R_8679309_SNP [dm3] 3R_12853587_SNP [dm6]	A	G	1.646e^-5	0.687	INTERGENIC
X	18144771	X_18144771_SNP [dm3] X_18250738_SNP [dm6]	T	G	1.665e^-5	0.687	INTERGENIC
2L	3588858	2L_3588858_SNP [dm3] 2L_3588858_SNP [dm6]	G	T	1.668e^-5	0.687	EXON CR43823	TF binding site mE1_TFBS_HSA
3R	9178100	3R_9178100_SNP [dm3] 3R_13352378_SNP [dm6]	C	A	1.675e^-5	0.687	INTERGENIC
3R	25065716	3R_25065716_SNP [dm3] 3R_29239994_SNP [dm6]	G	A	1.686e^-5	0.687	DOWNSTREAM CG31445 INTRON CG31427
2L	10928288	2L_10928288_SNP [dm3] 2L_10928288_SNP [dm6]	T	G	1.828e^-5	0.704	INTRON dpr2
3L	1024826	3L_1024826_SNP [dm3] 3L_1024826_SNP [dm6]	G	C	1.861e^-5	0.704	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	7071513	X_7071513_SNP [dm3] X_7177480_SNP [dm6]	G	T	1.884e^-5	0.704	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9130399	3R_9130399_SNP [dm3] 3R_13304677_SNP [dm6]	T	C	1.884e^-5	0.704	UPSTREAM CG32473 DOWNSTREAM CG43208 INTRON CG32473	TF binding site mE1_TFBS_Trl
3R	12489850	3R_12489850_SNP [dm3] 3R_16664128_SNP [dm6]	A	C	1.914e^-5	0.704	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4866654	2R_4866654_SNP [dm3] 2R_8979149_SNP [dm6]	G	A	2.005e^-5	0.708	INTRON CG8213
X	18842936	X_18842936_SNP [dm3] X_18948903_SNP [dm6]	A	G	2.033e^-5	0.708	INTRON CG43759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	14014771	X_14014771_MNP [dm3] X_14120738_MNP [dm6]	GGT	ATG	2.071e^-5	0.708	INTERGENIC
X	11177716	X_11177716_SNP [dm3] X_11283683_SNP [dm6]	C	T	2.077e^-5	0.708	INTRON CG44422
3R	9068891	3R_9068891_SNP [dm3] 3R_13243169_SNP [dm6]	A	G	2.117e^-5	0.709	INTRON Ace
3R	21899152	3R_21899152_SNP [dm3] 3R_26073430_SNP [dm6]	G	T	2.317e^-5	0.712	INTERGENIC
2L	10938497	2L_10938497_SNP [dm3] 2L_10938497_SNP [dm6]	T	C	2.406e^-5	0.712	DOWNSTREAM CG14072 INTRON dpr2
2R	9999719	2R_9999719_SNP [dm3] 2R_14112214_SNP [dm6]	A	G	2.560e^-5	0.712	INTRON Prosap
2L	10928343	2L_10928343_SNP [dm3] 2L_10928343_SNP [dm6]	A	T	2.610e^-5	0.712	INTRON dpr2
2L	14270848	2L_14270848_SNP [dm3] 2L_14270848_SNP [dm6]	G	C	2.623e^-5	0.712	INTRON wb
2L	10928289	2L_10928289_SNP [dm3] 2L_10928289_SNP [dm6]	T	A	2.693e^-5	0.712	INTRON dpr2
3L	18980788	3L_18980788_SNP [dm3] 3L_18987688_SNP [dm6]	C	T	2.715e^-5	0.712	SYNONYMOUS_CODING CG11619
3R	8679004	3R_8679004_SNP [dm3] 3R_12853282_SNP [dm6]	C	T	2.773e^-5	0.712	INTERGENIC
3L	13331807	3L_13331807_SNP [dm3] 3L_13338707_SNP [dm6]	A	T	2.794e^-5	0.712	INTERGENIC
3R	25536213	3R_25536213_SNP [dm3] 3R_29710491_SNP [dm6]	T	C	2.817e^-5	0.712	INTERGENIC
3R	4971303	3R_4971303_SNP [dm3] 3R_9145581_SNP [dm6]	A	C	2.827e^-5	0.712	INTRON pum	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8395318	3R_8395318_SNP [dm3] 3R_12569596_SNP [dm6]	G	T	2.828e^-5	0.712	INTRON Octbeta2R
3R	8670219	3R_8670219_SNP [dm3] 3R_12844497_SNP [dm6]	T	C	2.869e^-5	0.712	INTRON beat-Va
2R	16456582	2R_16456582_SNP [dm3] 2R_20569077_SNP [dm6]	A	G	2.908e^-5	0.712	INTRON qsm
2L	10928296	2L_10928296_SNP [dm3] 2L_10928296_SNP [dm6]	T	G	2.910e^-5	0.712	INTRON dpr2
X	19855539	X_19855539_SNP [dm3] X_19961506_SNP [dm6]	C	A	2.919e^-5	0.712	UTR_5_PRIME Nep3 UPSTREAM Nep3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14200389	2R_14200389_SNP [dm3] 2R_18312884_SNP [dm6]	G	T	2.954e^-5	0.712	DOWNSTREAM Tango8 INTRON sbb
X	5358881	X_5358881_SNP [dm3] X_5464848_SNP [dm6]	C	G	2.967e^-5	0.712	UTR_5_PRIME SPR INTRON SPR
X	7071353	X_7071353_SNP [dm3] X_7177320_SNP [dm6]	C	G	2.993e^-5	0.712	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3116436	2R_3116436_SNP [dm3] 2R_7228931_SNP [dm6]	C	A	2.998e^-5	0.712	INTERGENIC
2R	4868418	2R_4868418_DEL [dm3] 2R_8980913_DEL [dm6]	ATAAAA	G	3.067e^-5	0.712	INTRON CG8213	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5358871	X_5358871_SNP [dm3] X_5464838_SNP [dm6]	T	A	3.087e^-5	0.712	UTR_5_PRIME SPR INTRON SPR
3R	13454344	3R_13454344_SNP [dm3] 3R_17628622_SNP [dm6]	A	G	3.087e^-5	0.712	SYNONYMOUS_CODING CG14325 DOWNSTREAM tRNA:V4:90C
2L	18439233	2L_18439233_SNP [dm3] 2L_18439233_SNP [dm6]	T	A	3.097e^-5	0.712	INTERGENIC
2L	11935603	2L_11935603_SNP [dm3] 2L_11935603_SNP [dm6]	G	T	3.126e^-5	0.712	NON_SYNONYMOUS_CODING Or33a UPSTREAM Or33b
3R	13454335	3R_13454335_SNP [dm3] 3R_17628613_SNP [dm6]	C	G	3.142e^-5	0.712	SYNONYMOUS_CODING CG14325 DOWNSTREAM tRNA:V4:90C
2L	11966312	2L_11966312_SNP [dm3] 2L_11966312_SNP [dm6]	C	A	3.165e^-5	0.712	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18485403	2R_18485403_SNP [dm3] 2R_22597898_SNP [dm6]	A	C	3.224e^-5	0.712	UTR_5_PRIME CG4269 UPSTREAM CR45328	TF binding site mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	7071356	X_7071356_SNP [dm3] X_7177323_SNP [dm6]	T	A	3.256e^-5	0.712	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7071344	X_7071344_SNP [dm3] X_7177311_SNP [dm6]	T	A	3.264e^-5	0.712	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12180381	3L_12180381_SNP [dm3] 3L_12187281_SNP [dm6]	A	G	3.313e^-5	0.714	SYNONYMOUS_STOP CG6910	TF binding site mE1_TFBS_cad
3R	16643841	3R_16643841_SNP [dm3] 3R_20818119_SNP [dm6]	A	T	3.465e^-5	0.715	INTRON CG17270
3R	17003206	3R_17003206_SNP [dm3] 3R_21177484_SNP [dm6]	T	A	3.500e^-5	0.715	INTRON SNF4Agamma
2L	16428832	2L_16428832_SNP [dm3] 2L_16428832_SNP [dm6]	T	C	3.500e^-5	0.715	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9124887	3R_9124887_SNP [dm3] 3R_13299165_SNP [dm6]	G	A	3.594e^-5	0.715	NON_SYNONYMOUS_CODING CG8774 UTR_5_PRIME CG8774 DOWNSTREAM CG8773	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	12834851	3L_12834851_SNP [dm3] 3L_12841751_SNP [dm6]	T	A	3.673e^-5	0.715	INTRON CG10960	TF binding site mE1_TFBS_zfh1
2L	10835284	2L_10835284_SNP [dm3] 2L_10835284_SNP [dm6]	A	C	3.844e^-5	0.715	INTRON Nos
3R	22982449	3R_22982449_SNP [dm3] 3R_27156727_SNP [dm6]	T	G	3.948e^-5	0.715	UTR_3_PRIME Men-b DOWNSTREAM Men-b INTRON Men-b
3R	22982310	3R_22982310_SNP [dm3] 3R_27156588_SNP [dm6]	A	G	4.004e^-5	0.715	UTR_3_PRIME Men-b DOWNSTREAM Men-b INTRON Men-b
3R	22982364	3R_22982364_SNP [dm3] 3R_27156642_SNP [dm6]	A	T	4.019e^-5	0.715	UTR_3_PRIME Men-b DOWNSTREAM Men-b INTRON Men-b
2R	19574609	2R_19574609_SNP [dm3] 2R_23687086_SNP [dm6]	A	G	4.053e^-5	0.715	SYNONYMOUS_CODING St3 UPSTREAM Pal2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18144765	X_18144765_SNP [dm3] X_18250732_SNP [dm6]	T	C	4.071e^-5	0.715	INTERGENIC
3L	16171349	3L_16171349_SNP [dm3] 3L_16178249_SNP [dm6]	T	C	4.084e^-5	0.715	UPSTREAM CR45755 DOWNSTREAM CR45754 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22982330	3R_22982330_SNP [dm3] 3R_27156608_SNP [dm6]	G	A	4.086e^-5	0.715	UTR_3_PRIME Men-b DOWNSTREAM Men-b INTRON Men-b

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By genomic position
Variant impact
Gene name

mn_RespHexanol_0_3 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results