DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.895e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.0072	0.0829
In_2L_t	5.8331	0.0541

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2118 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	6766028	3L_6766028_SNP [dm3] 3L_6772928_SNP [dm6]	G	A	6.010e^-7	0.862	INTERGENIC
2L	10055248	2L_10055248_SNP [dm3] 2L_10055248_SNP [dm6]	G	A	2.611e^-6	0.862	SYNONYMOUS_CODING Cpr31A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10751601	2L_10751601_SNP [dm3] 2L_10751601_SNP [dm6]	T	A	2.993e^-6	0.862	INTRON CG17124	TF binding site mE1_TFBS_cad
2R	11340675	2R_11340675_INS [dm3] 2R_15453170_INS [dm6]	A	ACA	4.438e^-6	0.862	INTRON CG43729
2R	4684924	2R_4684924_SNP [dm3] 2R_8797419_SNP [dm6]	G	A	5.601e^-6	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6757322	2R_6757322_SNP [dm3] 2R_10869817_SNP [dm6]	C	T	5.683e^-6	0.862	INTRON CG30015
2L	10054758	2L_10054758_SNP [dm3] 2L_10054758_SNP [dm6]	A	T	6.774e^-6	0.862	DOWNSTREAM CR44875 INTRON Cpr31A	TF binding site mE1_TFBS_cad mE1_TFBS_jumu
2R	11876343	2R_11876343_DEL [dm3] 2R_15988838_DEL [dm6]	TCA	T	7.052e^-6	0.862	DOWNSTREAM CR45021 & 1 other INTRON Strn-Mlck
3L	11431770	3L_11431770_SNP [dm3] 3L_11438670_SNP [dm6]	A	T	8.694e^-6	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	12613916	X_12613916_DEL [dm3] X_12719883_DEL [dm6]	AA	A	8.807e^-6	0.862	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12613919	X_12613919_SNP [dm3] X_12719886_SNP [dm6]	T	G	9.820e^-6	0.862	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12613909	X_12613909_SNP [dm3] X_12719876_SNP [dm6]	T	C	9.843e^-6	0.862	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	3645642	X_3645642_SNP [dm3] X_3751609_SNP [dm6]	G	C	1.010e^-5	0.862	INTRON tlk
3L	10506720	3L_10506720_SNP [dm3] 3L_10513620_SNP [dm6]	C	T	1.014e^-5	0.862	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl
3L	16171290	3L_16171290_SNP [dm3] 3L_16178190_SNP [dm6]	C	T	1.205e^-5	0.862	UPSTREAM CR45755 DOWNSTREAM CR45754 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19952180	3R_19952180_SNP [dm3] 3R_24126458_SNP [dm6]	T	C	1.205e^-5	0.862	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14788150	3R_14788150_SNP [dm3] 3R_18962428_SNP [dm6]	A	G	1.293e^-5	0.862	INTRON CG42613 & 1 other
3R	22957555	3R_22957555_SNP [dm3] 3R_27131833_SNP [dm6]	G	A	1.349e^-5	0.862	INTRON CG6051	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18267502	3R_18267502_SNP [dm3] 3R_22441780_SNP [dm6]	C	T	1.359e^-5	0.862	SYNONYMOUS_CODING CG12499
3R	18267511	3R_18267511_SNP [dm3] 3R_22441789_SNP [dm6]	C	T	1.359e^-5	0.862	SYNONYMOUS_CODING CG12499
X	10150281	X_10150281_SNP [dm3] X_10256248_SNP [dm6]	G	A	1.447e^-5	0.862	START_GAINED Hk UTR_5_PRIME Hk UPSTREAM CR43959 INTRON Hk
2R	6994551	2R_6994551_SNP [dm3] 2R_11107046_SNP [dm6]	G	A	1.457e^-5	0.862	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6994558	2R_6994558_DEL [dm3] 2R_11107053_DEL [dm6]	AATAC	A	1.457e^-5	0.862	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	7285417	3R_7285417_SNP [dm3] 3R_11459695_SNP [dm6]	G	T	1.482e^-5	0.862	INTRON CG17230 & 1 other
2R	9999719	2R_9999719_SNP [dm3] 2R_14112214_SNP [dm6]	A	G	1.492e^-5	0.862	INTRON Prosap
3R	7286683	3R_7286683_SNP [dm3] 3R_11460961_SNP [dm6]	T	A	1.567e^-5	0.862	UPSTREAM PGRP-LB INTRON CG17230
3L	1850569	3L_1850569_SNP [dm3] 3L_1850569_SNP [dm6]	T	C	1.604e^-5	0.862	DOWNSTREAM CG13936 INTERGENIC
3R	14939862	3R_14939862_SNP [dm3] 3R_19114140_SNP [dm6]	T	C	1.611e^-5	0.862	INTRON CG6040	transposable element FlyBase
3R	11475807	3R_11475807_SNP [dm3] 3R_15650085_SNP [dm6]	A	G	1.661e^-5	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	16428832	2L_16428832_SNP [dm3] 2L_16428832_SNP [dm6]	T	C	1.743e^-5	0.862	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19951577	3R_19951577_SNP [dm3] 3R_24125855_SNP [dm6]	C	A	1.808e^-5	0.862	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20586692	3R_20586692_SNP [dm3] 3R_24760970_SNP [dm6]	G	C	1.827e^-5	0.862	UTR_3_PRIME AstA DOWNSTREAM asp	TF binding site mE1_TFBS_cad
3L	1071914	3L_1071914_SNP [dm3] 3L_1071914_SNP [dm6]	A	C	1.860e^-5	0.862	INTRON bab1
X	15421596	X_15421596_SNP [dm3] X_15527563_SNP [dm6]	C	T	1.866e^-5	0.862	INTRON Ac13E
X	2487721	X_2487721_SNP [dm3] X_2593688_SNP [dm6]	T	C	1.884e^-5	0.862	UTR_5_PRIME egh INTRON egh	TF binding site mE1_TFBS_sens
3R	21353362	3R_21353362_SNP [dm3] 3R_25527640_SNP [dm6]	T	A	1.918e^-5	0.862	INTRON msi
2R	8527327	2R_8527327_SNP [dm3] 2R_12639822_SNP [dm6]	T	C	2.016e^-5	0.862	SPLICE_SITE_REGION Iswi DOWNSTREAM CG8785 INTRON Iswi	TF binding site mE1_TFBS_cad
3R	12152709	3R_12152709_SNP [dm3] 3R_16326987_SNP [dm6]	G	A	2.138e^-5	0.862	SYNONYMOUS_CODING CG17929 UPSTREAM CG17930 INTRON Sulf1
2R	9524402	2R_9524402_SNP [dm3] 2R_13636897_SNP [dm6]	A	T	2.169e^-5	0.862	INTRON fas
3L	18442927	3L_18442927_SNP [dm3] 3L_18449827_SNP [dm6]	A	G	2.264e^-5	0.862	INTERGENIC
2R	11340875	2R_11340875_SNP [dm3] 2R_15453370_SNP [dm6]	C	T	2.293e^-5	0.862	INTRON CG43729
2R	17277601	2R_17277601_SNP [dm3] 2R_21390096_SNP [dm6]	C	T	2.411e^-5	0.862	SYNONYMOUS_CODING Acox57D-d DOWNSTREAM Acox57D-p
2L	11574489	2L_11574489_SNP [dm3] 2L_11574489_SNP [dm6]	G	A	2.475e^-5	0.862	INTERGENIC
2R	19297196	2R_19297196_SNP [dm3] 2R_23409673_SNP [dm6]	C	G	2.491e^-5	0.862	INTERGENIC
2R	20813753	2R_20813753_SNP [dm3] 2R_24926230_SNP [dm6]	T	A	2.495e^-5	0.862	INTRON pain
2L	10590285	2L_10590285_SNP [dm3] 2L_10590285_SNP [dm6]	C	T	2.496e^-5	0.862	INTRON Trim9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	10310816	3L_10310816_SNP [dm3] 3L_10317716_SNP [dm6]	A	C	2.515e^-5	0.862	INTERGENIC
2R	11339784	2R_11339784_SNP [dm3] 2R_15452279_SNP [dm6]	T	A	2.590e^-5	0.862	INTRON CG43729
3L	1870613	3L_1870613_SNP [dm3] 3L_1870613_SNP [dm6]	T	C	2.692e^-5	0.862	SYNONYMOUS_CODING CG13924 DOWNSTREAM dre4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19951844	3R_19951844_SNP [dm3] 3R_24126122_SNP [dm6]	T	G	2.711e^-5	0.862	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8526108	2R_8526108_SNP [dm3] 2R_12638603_SNP [dm6]	T	C	2.735e^-5	0.862	SYNONYMOUS_CODING Iswi	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10588603	3R_10588603_DEL [dm3] 3R_14762881_DEL [dm6]	TT	T	2.814e^-5	0.862	INTRON jvl
3R	20586682	3R_20586682_SNP [dm3] 3R_24760960_SNP [dm6]	A	T	2.833e^-5	0.862	UTR_3_PRIME AstA DOWNSTREAM asp	TF binding site mE1_TFBS_cad
2R	7465507	2R_7465507_SNP [dm3] 2R_11578002_SNP [dm6]	G	A	2.835e^-5	0.862	UTR_3_PRIME tou DOWNSTREAM tou
2L	881046	2L_881046_SNP [dm3] 2L_881046_SNP [dm6]	T	C	2.854e^-5	0.862	SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad
3R	27085595	3R_27085595_SNP [dm3] 3R_31259873_SNP [dm6]	T	C	2.875e^-5	0.862	SYNONYMOUS_CODING CG3669 UPSTREAM CG18672
X	7434765	X_7434765_SNP [dm3] X_7540732_SNP [dm6]	C	T	2.885e^-5	0.862	INTRON CG32719
X	7435099	X_7435099_SNP [dm3] X_7541066_SNP [dm6]	T	C	2.885e^-5	0.862	INTRON CG32719
X	7435896	X_7435896_SNP [dm3] X_7541863_SNP [dm6]	C	T	2.892e^-5	0.862	INTRON CG32719	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad
3L	18443071	3L_18443071_SNP [dm3] 3L_18449971_SNP [dm6]	T	C	2.923e^-5	0.862	INTERGENIC
X	2488174	X_2488174_SNP [dm3] X_2594141_SNP [dm6]	A	G	2.935e^-5	0.862	INTRON egh
3R	7285161	3R_7285161_SNP [dm3] 3R_11459439_SNP [dm6]	A	G	2.937e^-5	0.862	INTRON CG17230 & 1 other
3L	15971401	3L_15971401_SNP [dm3] 3L_15978301_SNP [dm6]	G	A	2.939e^-5	0.862	NON_SYNONYMOUS_CODING CG17029 UPSTREAM CG17028 INTRON brm
2L	10635669	2L_10635669_SNP [dm3] 2L_10635669_SNP [dm6]	C	T	3.002e^-5	0.862	INTRON CG7329
3L	14390234	3L_14390234_SNP [dm3] 3L_14397134_SNP [dm6]	T	C	3.030e^-5	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19517064	X_19517064_SNP [dm3] X_19623031_SNP [dm6]	G	A	3.123e^-5	0.862	UTR_5_PRIME NAA20 UPSTREAM MKP-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9274440	3R_9274440_SNP [dm3] 3R_13448718_SNP [dm6]	T	G	3.141e^-5	0.862	INTERGENIC
2L	16551549	2L_16551549_SNP [dm3] 2L_16551549_SNP [dm6]	A	G	3.223e^-5	0.862	INTRON CG42389
2R	18026957	2R_18026957_SNP [dm3] 2R_22139452_SNP [dm6]	T	C	3.248e^-5	0.862	UPSTREAM gom DOWNSTREAM CG11269 INTRON a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3645633	X_3645633_SNP [dm3] X_3751600_SNP [dm6]	A	G	3.250e^-5	0.862	INTRON tlk
2R	16078097	2R_16078097_SNP [dm3] 2R_20190592_SNP [dm6]	C	T	3.293e^-5	0.862	INTERGENIC
2L	6638731	2L_6638731_SNP [dm3] 2L_6638731_SNP [dm6]	T	A	3.311e^-5	0.862	SYNONYMOUS_CODING CG31635	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12835291	3L_12835291_SNP [dm3] 3L_12842191_SNP [dm6]	G	A	3.445e^-5	0.877	INTRON CG10960	TF binding site mE1_TFBS_zfh1
2L	19383526	2L_19383526_SNP [dm3] 2L_19383526_SNP [dm6]	C	A	3.523e^-5	0.877	UTR_3_PRIME fon DOWNSTREAM CG17350
3R	18267546	3R_18267546_SNP [dm3] 3R_22441824_SNP [dm6]	G	A	3.569e^-5	0.877	SYNONYMOUS_CODING CG12499
3R	3351885	3R_3351885_SNP [dm3] 3R_7526163_SNP [dm6]	T	C	3.877e^-5	0.877	UPSTREAM alpha-Est4aPsi INTRON alpha-Est6
2R	17641639	2R_17641639_DEL [dm3] 2R_21754134_DEL [dm6]	TGCCGTCTCTTTTT...	T	3.908e^-5	0.877	INTERGENIC
2L	11494827	2L_11494827_SNP [dm3] 2L_11494827_SNP [dm6]	A	G	3.953e^-5	0.877	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	16174409	3L_16174409_SNP [dm3] 3L_16181309_SNP [dm6]	G	A	4.012e^-5	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10054079	2L_10054079_SNP [dm3] 2L_10054079_SNP [dm6]	T	C	4.017e^-5	0.877	UPSTREAM Cpr31A EXON CR44875
3L	18443052	3L_18443052_SNP [dm3] 3L_18449952_SNP [dm6]	C	A	4.031e^-5	0.877	INTERGENIC
3L	10352598	3L_10352598_SNP [dm3] 3L_10359498_SNP [dm6]	T	C	4.041e^-5	0.877	EXON CR44327
3R	17690116	3R_17690116_SNP [dm3] 3R_21864394_SNP [dm6]	T	G	4.161e^-5	0.877	UPSTREAM lsn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	18693129	X_18693129_SNP [dm3] X_18799096_SNP [dm6]	T	C	4.199e^-5	0.877	INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15421658	X_15421658_SNP [dm3] X_15527625_SNP [dm6]	A	G	4.366e^-5	0.877	INTRON Ac13E
2R	14399446	2R_14399446_SNP [dm3] 2R_18511941_SNP [dm6]	T	C	4.373e^-5	0.877	INTERGENIC
X	12562681	X_12562681_SNP [dm3] X_12668648_SNP [dm6]	A	G	4.375e^-5	0.877	INTRON Tis11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	974004	3L_974004_DEL [dm3] 3L_974004_DEL [dm6]	CACTCACGATTGGCATTGGA...	C	4.436e^-5	0.877	INTRON Glut1
3L	18442919	3L_18442919_SNP [dm3] 3L_18449819_SNP [dm6]	A	G	4.497e^-5	0.877	INTERGENIC
3R	15152910	3R_15152910_INS [dm3] 3R_19327188_INS [dm6]	A	AA	4.548e^-5	0.877	UPSTREAM Dl & 1 other EXON CR44175
2R	6750273	2R_6750273_SNP [dm3] 2R_10862768_SNP [dm6]	G	C	4.568e^-5	0.877	INTRON CG30015
3L	5591956	3L_5591956_SNP [dm3] 3L_5598856_SNP [dm6]	G	T	4.617e^-5	0.877	SYNONYMOUS_CODING CG10591	TF binding site mE1_TFBS_chinmo
3R	7285397	3R_7285397_DEL [dm3] 3R_11459675_DEL [dm6]	GGGTTTACTTTG...	G	4.820e^-5	0.877	INTRON CG17230 & 1 other
3R	3340654	3R_3340654_SNP [dm3] 3R_7514932_SNP [dm6]	C	G	4.912e^-5	0.877	INTRON alpha-Est8
X	5878901	X_5878901_SNP [dm3] X_5984868_SNP [dm6]	T	G	4.975e^-5	0.877	SYNONYMOUS_CODING Grip	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11348958	3R_11348958_SNP [dm3] 3R_15523236_SNP [dm6]	G	C	4.983e^-5	0.877	INTERGENIC
2L	10590300	2L_10590300_SNP [dm3] 2L_10590300_SNP [dm6]	G	T	4.995e^-5	0.877	INTRON Trim9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	6750265	2R_6750265_SNP [dm3] 2R_10862760_SNP [dm6]	T	C	5.031e^-5	0.877	INTRON CG30015
3L	6554215	3L_6554215_SNP [dm3] 3L_6561115_SNP [dm6]	T	A	5.142e^-5	0.877	INTRON CG18769
2L	20045090	2L_20045090_SNP [dm3] 2L_20045090_SNP [dm6]	G	A	5.247e^-5	0.877	INTRON sNPF	transposable element FlyBase
3R	11461726	3R_11461726_SNP [dm3] 3R_15636004_SNP [dm6]	T	A	5.275e^-5	0.877	SYNONYMOUS_CODING CG43335	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11340615	2R_11340615_SNP [dm3] 2R_15453110_SNP [dm6]	C	T	5.305e^-5	0.877	INTRON CG43729
X	7436549	X_7436549_SNP [dm3] X_7542516_SNP [dm6]	G	T	5.316e^-5	0.877	INTRON CG32719	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17028659	3R_17028659_SNP [dm3] 3R_21202937_SNP [dm6]	T	C	5.389e^-5	0.877	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	9871571	2L_9871571_SNP [dm3] 2L_9871571_SNP [dm6]	A	G	5.468e^-5	0.877	INTRON nAChRalpha6
2L	4485845	2L_4485845_SNP [dm3] 2L_4485845_SNP [dm6]	G	A	5.475e^-5	0.877	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7285843	3R_7285843_SNP [dm3] 3R_11460121_SNP [dm6]	C	G	5.495e^-5	0.877	INTRON CG17230 & 1 other
X	7433006	X_7433006_SNP [dm3] X_7538973_SNP [dm6]	A	C	5.553e^-5	0.877	INTRON CG32719
2R	14200271	2R_14200271_SNP [dm3] 2R_18312766_SNP [dm6]	T	C	5.564e^-5	0.877	DOWNSTREAM Tango8 INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11422009	3R_11422009_SNP [dm3] 3R_15596287_SNP [dm6]	T	C	5.807e^-5	0.877	INTERGENIC
3L	1714780	3L_1714780_SNP [dm3] 3L_1714780_SNP [dm6]	C	A	5.930e^-5	0.877	SYNONYMOUS_CODING CG7991 DOWNSTREAM drpr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9165596	3R_9165596_SNP [dm3] 3R_13339874_SNP [dm6]	G	A	5.965e^-5	0.877	INTRON PK2-R1
2L	9871621	2L_9871621_SNP [dm3] 2L_9871621_SNP [dm6]	G	C	6.133e^-5	0.877	INTRON nAChRalpha6
2L	16428852	2L_16428852_SNP [dm3] 2L_16428852_SNP [dm6]	A	G	6.209e^-5	0.877	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	9188681	X_9188681_SNP [dm3] X_9294648_SNP [dm6]	G	T	6.332e^-5	0.877	INTRON lz	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15972355	3L_15972355_SNP [dm3] 3L_15979255_SNP [dm6]	C	T	6.332e^-5	0.877	UPSTREAM CG17027 DOWNSTREAM CG17029 INTRON brm & 1 other
2L	16428856	2L_16428856_SNP [dm3] 2L_16428856_SNP [dm6]	A	T	6.353e^-5	0.877	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18443062	3L_18443062_SNP [dm3] 3L_18449962_SNP [dm6]	C	A	6.417e^-5	0.877	INTERGENIC
3R	20127227	3R_20127227_SNP [dm3] 3R_24301505_SNP [dm6]	C	T	6.454e^-5	0.877	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	17687082	3L_17687082_SNP [dm3] 3L_17693982_SNP [dm6]	C	A	6.505e^-5	0.877	INTRON Ccn
3L	18442881	3L_18442881_SNP [dm3] 3L_18449781_SNP [dm6]	C	T	6.539e^-5	0.877	INTERGENIC
3L	5813556	3L_5813556_SNP [dm3] 3L_5820456_SNP [dm6]	C	T	6.572e^-5	0.877	INTRON vn
2R	13046802	2R_13046802_SNP [dm3] 2R_17159297_SNP [dm6]	C	T	6.589e^-5	0.877	UPSTREAM CG17287 & 1 other DOWNSTREAM CG30457 INTERGENIC
X	12379509	X_12379509_SNP [dm3] X_12485476_SNP [dm6]	T	C	6.602e^-5	0.877	INTERGENIC
X	17524499	X_17524499_SNP [dm3] X_17630466_SNP [dm6]	T	G	6.725e^-5	0.877	NON_SYNONYMOUS_CODING CG8316 UPSTREAM CG8326	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2005339	2R_2005339_DEL [dm3] 2R_6117834_DEL [dm6]	TT	T	6.837e^-5	0.877	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	18693136	X_18693136_SNP [dm3] X_18799103_SNP [dm6]	C	T	6.839e^-5	0.877	INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16451605	2L_16451605_SNP [dm3] 2L_16451605_SNP [dm6]	T	C	6.908e^-5	0.877	SYNONYMOUS_CODING Idgf3	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2R	11339841	2R_11339841_SNP [dm3] 2R_15452336_SNP [dm6]	G	C	6.925e^-5	0.877	INTRON CG43729
3R	26094190	3R_26094190_DEL [dm3] 3R_30268468_DEL [dm6]	AAAATGTTTGATCAAAATGC...	A	7.007e^-5	0.877	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	7266893	3L_7266893_SNP [dm3] 3L_7273793_SNP [dm6]	A	G	7.081e^-5	0.877	INTRON unc-13-4A
2R	8969000	2R_8969000_SNP [dm3] 2R_13081495_SNP [dm6]	C	T	7.119e^-5	0.877	INTERGENIC
2L	862863	2L_862863_SNP [dm3] 2L_862863_SNP [dm6]	G	A	7.127e^-5	0.877	SYNONYMOUS_CODING aru	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27076666	3R_27076666_SNP [dm3] 3R_31250944_SNP [dm6]	A	G	7.302e^-5	0.877	INTRON qless	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	9930281	X_9930281_SNP [dm3] X_10036248_SNP [dm6]	G	C	7.363e^-5	0.877	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14869299	2R_14869299_SNP [dm3] 2R_18981794_SNP [dm6]	G	A	7.365e^-5	0.877	INTERGENIC
2R	9274643	2R_9274643_SNP [dm3] 2R_13387138_SNP [dm6]	G	C	7.469e^-5	0.877	INTERGENIC
2R	13052294	2R_13052294_SNP [dm3] 2R_17164789_SNP [dm6]	G	A	7.560e^-5	0.877	DOWNSTREAM CG10953 INTERGENIC
3L	10512016	3L_10512016_SNP [dm3] 3L_10518916_SNP [dm6]	T	C	7.587e^-5	0.877	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16428842	2L_16428842_SNP [dm3] 2L_16428842_SNP [dm6]	G	A	7.610e^-5	0.877	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19951794	3R_19951794_SNP [dm3] 3R_24126072_SNP [dm6]	T	A	7.632e^-5	0.877	NON_SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12213585	2L_12213585_DEL [dm3] 2L_12213585_DEL [dm6]	TA	T	7.690e^-5	0.877	INTRON aret
2L	9412608	2L_9412608_SNP [dm3] 2L_9412608_SNP [dm6]	A	G	7.693e^-5	0.877	INTRON Shawl
X	2375730	X_2375730_SNP [dm3] X_2481697_SNP [dm6]	G	A	7.729e^-5	0.877	SYNONYMOUS_CODING trol
3R	16331072	3R_16331072_SNP [dm3] 3R_20505350_SNP [dm6]	C	A	7.742e^-5	0.877	NON_SYNONYMOUS_CODING Or92a
3L	9581486	3L_9581486_SNP [dm3] 3L_9588386_SNP [dm6]	G	A	7.773e^-5	0.877	SYNONYMOUS_CODING CG42673	TF binding site mE1_TFBS_chinmo
3R	3351891	3R_3351891_SNP [dm3] 3R_7526169_SNP [dm6]	G	C	7.793e^-5	0.877	UPSTREAM alpha-Est4aPsi INTRON alpha-Est6
3L	15971708	3L_15971708_SNP [dm3] 3L_15978608_SNP [dm6]	G	A	7.811e^-5	0.877	SYNONYMOUS_CODING CG17028 DOWNSTREAM CG17029 INTRON brm
3L	1837182	3L_1837182_SNP [dm3] 3L_1837182_SNP [dm6]	C	T	7.845e^-5	0.877	INTERGENIC
3L	1837189	3L_1837189_SNP [dm3] 3L_1837189_SNP [dm6]	C	T	7.881e^-5	0.877	INTERGENIC
2L	3706473	2L_3706473_SNP [dm3] 2L_3706473_SNP [dm6]	G	T	7.936e^-5	0.877	UPSTREAM CG31778 DOWNSTREAM CG31777 & 1 other INTERGENIC
X	5884492	X_5884492_SNP [dm3] X_5990459_SNP [dm6]	A	T	7.966e^-5	0.877	UTR_5_PRIME CG5966 INTRON CG5966
2L	3272166	2L_3272166_DEL [dm3] 2L_3272166_DEL [dm6]	TATGTTTTCA	T	7.971e^-5	0.877	DOWNSTREAM CG3347 INTERGENIC
2L	9666419	2L_9666419_SNP [dm3] 2L_9666419_SNP [dm6]	A	C	8.052e^-5	0.877	INTERGENIC
2L	1719181	2L_1719181_SNP [dm3] 2L_1719181_SNP [dm6]	C	A	8.073e^-5	0.877	INTRON Rim2
3R	14939858	3R_14939858_SNP [dm3] 3R_19114136_SNP [dm6]	C	G	8.079e^-5	0.877	INTRON CG6040	transposable element FlyBase
2L	11378434	2L_11378434_DEL [dm3] 2L_11378434_DEL [dm6]	TT	T	8.140e^-5	0.877	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	12108215	3L_12108215_SNP [dm3] 3L_12115115_SNP [dm6]	C	G	8.182e^-5	0.877	UPSTREAM l_3_j2D3 INTERGENIC
3R	16643841	3R_16643841_SNP [dm3] 3R_20818119_SNP [dm6]	A	T	8.205e^-5	0.877	INTRON CG17270
3R	25458160	3R_25458160_SNP [dm3] 3R_29632438_SNP [dm6]	A	G	8.231e^-5	0.877	SYNONYMOUS_CODING Dop1R2 UTR_3_PRIME Dop1R2	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11378443	2L_11378443_SNP [dm3] 2L_11378443_SNP [dm6]	A	C	8.307e^-5	0.877	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	12614161	X_12614161_SNP [dm3] X_12720128_SNP [dm6]	T	G	8.310e^-5	0.877	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	11968930	3R_11968930_SNP [dm3] 3R_16143208_SNP [dm6]	A	T	8.349e^-5	0.877	INTRON Sb
X	6785206	X_6785206_SNP [dm3] X_6891173_SNP [dm6]	G	A	8.354e^-5	0.877	INTERGENIC
3L	15731188	3L_15731188_SNP [dm3] 3L_15738088_SNP [dm6]	C	T	8.356e^-5	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11339848	2R_11339848_SNP [dm3] 2R_15452343_SNP [dm6]	C	A	8.384e^-5	0.877	INTRON CG43729
2R	11339849	2R_11339849_SNP [dm3] 2R_15452344_SNP [dm6]	G	C	8.384e^-5	0.877	INTRON CG43729
3R	11422051	3R_11422051_SNP [dm3] 3R_15596329_SNP [dm6]	T	C	8.397e^-5	0.877	INTERGENIC
2R	19485960	2R_19485960_SNP [dm3] 2R_23598437_SNP [dm6]	A	C	8.415e^-5	0.877	SYNONYMOUS_CODING apt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11591333	2L_11591333_SNP [dm3] 2L_11591333_SNP [dm6]	G	A	8.437e^-5	0.877	DOWNSTREAM Acp33A INTRON kek2
2L	11591403	2L_11591403_SNP [dm3] 2L_11591403_SNP [dm6]	T	C	8.437e^-5	0.877	UTR_3_PRIME Acp33A INTRON kek2
X	5880044	X_5880044_SNP [dm3] X_5986011_SNP [dm6]	T	C	8.452e^-5	0.877	SYNONYMOUS_CODING Grip
X	12613912	X_12613912_SNP [dm3] X_12719879_SNP [dm6]	A	G	8.568e^-5	0.877	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12108294	3L_12108294_SNP [dm3] 3L_12115194_SNP [dm6]	C	A	8.613e^-5	0.877	UPSTREAM l_3_j2D3 INTERGENIC
2L	11588361	2L_11588361_SNP [dm3] 2L_11588361_SNP [dm6]	T	G	8.615e^-5	0.877	UPSTREAM CR44496 INTRON kek2
3R	23233381	3R_23233381_SNP [dm3] 3R_27407659_SNP [dm6]	T	G	8.808e^-5	0.877	INTRON side
2R	8447516	2R_8447516_SNP [dm3] 2R_12560011_SNP [dm6]	T	G	8.863e^-5	0.877	SYNONYMOUS_CODING fra
X	5613281	X_5613281_INS [dm3] X_5719248_INS [dm6]	T	TTGATTTAGGT...	8.962e^-5	0.877	DOWNSTREAM CG32758 INTERGENIC
X	7434778	X_7434778_SNP [dm3] X_7540745_SNP [dm6]	T	C	9.049e^-5	0.877	INTRON CG32719
2R	2851400	2R_2851400_SNP [dm3] 2R_6963895_SNP [dm6]	C	T	9.071e^-5	0.877	INTRON mim & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19901003	2R_19901003_SNP [dm3] 2R_24013480_SNP [dm6]	T	C	9.171e^-5	0.877	INTRON Unc-89
3R	20383253	3R_20383253_SNP [dm3] 3R_24557531_SNP [dm6]	G	T	9.385e^-5	0.877	UTR_3_PRIME CG13624 DOWNSTREAM Esyt2 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16171350	3L_16171350_SNP [dm3] 3L_16178250_SNP [dm6]	G	C	9.395e^-5	0.877	UPSTREAM CR45755 DOWNSTREAM CR45754 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	11421940	3R_11421940_INS [dm3] 3R_15596218_INS [dm6]	T	TA	9.408e^-5	0.877	INTERGENIC
3R	20602541	3R_20602541_SNP [dm3] 3R_24776819_SNP [dm6]	G	A	9.463e^-5	0.877	INTRON CG42331
3L	11338811	3L_11338811_SNP [dm3] 3L_11345711_SNP [dm6]	C	T	9.485e^-5	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	18443077	3L_18443077_SNP [dm3] 3L_18449977_SNP [dm6]	T	G	9.604e^-5	0.877	INTERGENIC
3L	2187696	3L_2187696_SNP [dm3] 3L_2187696_SNP [dm6]	A	T	9.606e^-5	0.877	DOWNSTREAM CG13810 INTERGENIC
3L	8675675	3L_8675675_SNP [dm3] 3L_8682575_SNP [dm6]	T	C	9.637e^-5	0.877	INTERGENIC	regulatory region REDfly_CRMs
2L	10054888	2L_10054888_SNP [dm3] 2L_10054888_SNP [dm6]	C	T	9.802e^-5	0.877	SYNONYMOUS_CODING Cpr31A DOWNSTREAM CR44875	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19141844	2R_19141844_SNP [dm3] 2R_23254321_SNP [dm6]	G	C	9.804e^-5	0.877	INTERGENIC
2R	19323225	2R_19323225_DEL [dm3] 2R_23435702_DEL [dm6]	TAGT	T	9.818e^-5	0.877	INTERGENIC
3R	11970234	3R_11970234_SNP [dm3] 3R_16144512_SNP [dm6]	C	T	9.897e^-5	0.877	SYNONYMOUS_CODING Sb DOWNSTREAM CG5903
2R	17296002	2R_17296002_SNP [dm3] 2R_21408497_SNP [dm6]	A	G	9.935e^-5	0.877	INTRON Sdc
X	18693152	X_18693152_SNP [dm3] X_18799119_SNP [dm6]	C	T	1.001e^-4	0.877	INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25837960	3R_25837960_SNP [dm3] 3R_30012238_SNP [dm6]	C	T	1.004e^-4	0.877	INTRON CG7920	TF binding site mE1_TFBS_cad
3R	11968928	3R_11968928_SNP [dm3] 3R_16143206_SNP [dm6]	T	A	1.009e^-4	0.877	INTRON Sb
3R	3351865	3R_3351865_SNP [dm3] 3R_7526143_SNP [dm6]	G	A	1.011e^-4	0.877	UPSTREAM alpha-Est4aPsi INTRON alpha-Est6
2L	9782683	2L_9782683_SNP [dm3] 2L_9782683_SNP [dm6]	G	A	1.012e^-4	0.877	UTR_5_PRIME IP3K1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18485664	2R_18485664_SNP [dm3] 2R_22598159_SNP [dm6]	A	T	1.013e^-4	0.877	INTRON CG4269	TF binding site mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
X	13876685	X_13876685_SNP [dm3] X_13982652_SNP [dm6]	A	T	1.032e^-4	0.877	INTRON mamo
3L	1388272	3L_1388272_SNP [dm3] 3L_1388272_SNP [dm6]	T	G	1.032e^-4	0.877	DOWNSTREAM ru INTRON Ptp61F
3R	9551363	3R_9551363_SNP [dm3] 3R_13725641_SNP [dm6]	A	G	1.046e^-4	0.877	INTRON CG34383
2L	6619919	2L_6619919_DEL [dm3] 2L_6619919_DEL [dm6]	AA	A	1.068e^-4	0.877	DOWNSTREAM CR44913 INTRON CG11320
2L	6458486	2L_6458486_SNP [dm3] 2L_6458486_SNP [dm6]	C	T	1.076e^-4	0.877	SYNONYMOUS_CODING frj DOWNSTREAM CG16947
3L	16171349	3L_16171349_SNP [dm3] 3L_16178249_SNP [dm6]	T	C	1.080e^-4	0.877	UPSTREAM CR45755 DOWNSTREAM CR45754 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2756131	3L_2756131_SNP [dm3] 3L_2756131_SNP [dm6]	C	T	1.086e^-4	0.877	INTRON Mrtf	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5332699	X_5332699_SNP [dm3] X_5438666_SNP [dm6]	A	G	1.093e^-4	0.877	INTERGENIC
3R	11982389	3R_11982389_DEL [dm3] 3R_16156667_DEL [dm6]	GATGAATG	G	1.119e^-4	0.877	INTRON CG6006
2R	7399854	2R_7399854_SNP [dm3] 2R_11512349_SNP [dm6]	C	T	1.120e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11309234	X_11309234_SNP [dm3] X_11415201_SNP [dm6]	C	T	1.122e^-4	0.877	SYNONYMOUS_CODING Gr10a DOWNSTREAM Or10a	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	12345809	2R_12345809_SNP [dm3] 2R_16458304_SNP [dm6]	T	C	1.136e^-4	0.877	INTERGENIC
3R	11421943	3R_11421943_SNP [dm3] 3R_15596221_SNP [dm6]	T	G	1.139e^-4	0.877	INTERGENIC
2R	19983134	2R_19983134_SNP [dm3] 2R_24095611_SNP [dm6]	A	C	1.151e^-4	0.877	NON_SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19176402	2R_19176402_SNP [dm3] 2R_23288879_SNP [dm6]	G	A	1.152e^-4	0.877	INTERGENIC
X	15883628	X_15883628_INS [dm3] X_15989595_INS [dm6]	A	GTAAAATCAGCC...	1.153e^-4	0.877	INTRON eIF5
2L	6618917	2L_6618917_SNP [dm3] 2L_6618917_SNP [dm6]	A	T	1.154e^-4	0.877	UPSTREAM CR44913 INTRON CG11320
X	3626543	X_3626543_SNP [dm3] X_3732510_SNP [dm6]	T	G	1.160e^-4	0.877	INTRON tlk
2L	10813966	2L_10813966_SNP [dm3] 2L_10813966_SNP [dm6]	G	C	1.160e^-4	0.877	INTRON Nos
3L	18442901	3L_18442901_SNP [dm3] 3L_18449801_SNP [dm6]	T	A	1.171e^-4	0.877	INTERGENIC
3L	7963684	3L_7963684_SNP [dm3] 3L_7970584_SNP [dm6]	A	G	1.171e^-4	0.877	UPSTREAM RNaseX25 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
X	2488220	X_2488220_SNP [dm3] X_2594187_SNP [dm6]	C	T	1.182e^-4	0.877	INTRON egh
2L	4527873	2L_4527873_SNP [dm3] 2L_4527873_SNP [dm6]	G	A	1.191e^-4	0.877	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11422004	3R_11422004_SNP [dm3] 3R_15596282_SNP [dm6]	A	G	1.196e^-4	0.877	INTERGENIC
2L	16428836	2L_16428836_SNP [dm3] 2L_16428836_SNP [dm6]	A	G	1.215e^-4	0.877	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7132734	3L_7132734_SNP [dm3] 3L_7139634_SNP [dm6]	C	T	1.217e^-4	0.877	SYNONYMOUS_CODING melt
3R	23723205	3R_23723205_SNP [dm3] 3R_27897483_SNP [dm6]	C	G	1.217e^-4	0.877	INTRON CG34353
2L	10672161	2L_10672161_SNP [dm3] 2L_10672161_SNP [dm6]	T	A	1.232e^-4	0.877	DOWNSTREAM CG31871 INTERGENIC
2R	19485978	2R_19485978_SNP [dm3] 2R_23598455_SNP [dm6]	A	G	1.235e^-4	0.877	SYNONYMOUS_CODING apt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17547244	2L_17547244_SNP [dm3] 2L_17547244_SNP [dm6]	T	A	1.245e^-4	0.877	EXON CR45697
3R	13454504	3R_13454504_SNP [dm3] 3R_17628782_SNP [dm6]	T	C	1.246e^-4	0.877	SYNONYMOUS_CODING CG14325 DOWNSTREAM tRNA:V4:90C
3L	1837200	3L_1837200_SNP [dm3] 3L_1837200_SNP [dm6]	T	A	1.257e^-4	0.877	INTERGENIC
2R	9136097	2R_9136097_SNP [dm3] 2R_13248592_SNP [dm6]	T	A	1.261e^-4	0.877	DOWNSTREAM Mp20 & 1 other INTRON Mp20
3L	2666882	3L_2666882_SNP [dm3] 3L_2666882_SNP [dm6]	C	G	1.286e^-4	0.877	SYNONYMOUS_CODING Fife
X	13904703	X_13904703_SNP [dm3] X_14010670_SNP [dm6]	T	A	1.287e^-4	0.877	INTERGENIC
2R	15741173	2R_15741173_SNP [dm3] 2R_19853668_SNP [dm6]	C	A	1.293e^-4	0.877	INTERGENIC
2R	7002361	2R_7002361_DEL [dm3] 2R_11114856_DEL [dm6]	AC	G	1.297e^-4	0.877	INTRON luna	TF binding site BDTNP1_TFBS_twi
2R	18678546	2R_18678546_SNP [dm3] 2R_22791041_SNP [dm6]	C	A	1.297e^-4	0.877	INTRON CG42260
3R	24098530	3R_24098530_SNP [dm3] 3R_28272808_SNP [dm6]	C	G	1.298e^-4	0.877	INTERGENIC
2R	18735246	2R_18735246_SNP [dm3] 2R_22847723_SNP [dm6]	C	G	1.307e^-4	0.877	SYNONYMOUS_CODING CG3649 DOWNSTREAM CG13531	TF binding site mE1_TFBS_cad
2L	11152879	2L_11152879_SNP [dm3] 2L_11152879_SNP [dm6]	G	C	1.310e^-4	0.877	INTRON CG6287	TF binding site mE1_TFBS_cad
3R	19951517	3R_19951517_SNP [dm3] 3R_24125795_SNP [dm6]	A	G	1.324e^-4	0.877	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18267312	3R_18267312_SNP [dm3] 3R_22441590_SNP [dm6]	G	A	1.325e^-4	0.877	SYNONYMOUS_CODING CG12499
3R	20167532	3R_20167532_SNP [dm3] 3R_24341810_SNP [dm6]	C	T	1.325e^-4	0.877	UPSTREAM Ms INTRON Ms	TF binding site mE1_TFBS_cad
2L	4459891	2L_4459891_SNP [dm3] 2L_4459891_SNP [dm6]	T	C	1.338e^-4	0.877	UTR_5_PRIME CG15435 UPSTREAM mRpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3L	6895498	3L_6895498_DEL [dm3] 3L_6902398_DEL [dm6]	TT	T	1.344e^-4	0.877	INTERGENIC
3L	3625581	3L_3625581_SNP [dm3] 3L_3625581_SNP [dm6]	G	T	1.346e^-4	0.877	UPSTREAM dar1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6633730	2L_6633730_SNP [dm3] 2L_6633730_SNP [dm6]	G	T	1.348e^-4	0.877	UTR_3_PRIME CG31635 DOWNSTREAM CG31635
X	12613850	X_12613850_SNP [dm3] X_12719817_SNP [dm6]	G	C	1.352e^-4	0.877	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6132177	2R_6132177_SNP [dm3] 2R_10244672_SNP [dm6]	C	T	1.366e^-4	0.877	INTRON Hdc
3L	2342053	3L_2342053_SNP [dm3] 3L_2342053_SNP [dm6]	T	G	1.366e^-4	0.877	INTRON MsR1
2R	5284125	2R_5284125_SNP [dm3] 2R_9396620_SNP [dm6]	C	T	1.368e^-4	0.877	SYNONYMOUS_CODING CG8801 UPSTREAM CG8800	TF binding site mE1_TFBS_cad
3R	7287829	3R_7287829_SNP [dm3] 3R_11462107_SNP [dm6]	C	T	1.369e^-4	0.877	INTRON CG17230
X	4481778	X_4481778_SNP [dm3] X_4587745_SNP [dm6]	G	A	1.371e^-4	0.877	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10148017	X_10148017_SNP [dm3] X_10253984_SNP [dm6]	G	C	1.374e^-4	0.877	INTRON Hk
2R	8526090	2R_8526090_SNP [dm3] 2R_12638585_SNP [dm6]	A	G	1.380e^-4	0.877	SYNONYMOUS_CODING Iswi	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5469755	2L_5469755_SNP [dm3] 2L_5469755_SNP [dm6]	C	T	1.382e^-4	0.877	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	974033	3L_974033_SNP [dm3] 3L_974033_SNP [dm6]	G	C	1.383e^-4	0.877	INTRON Glut1
3L	5525870	3L_5525870_SNP [dm3] 3L_5532770_SNP [dm6]	T	C	1.388e^-4	0.877	INTERGENIC
X	16599855	X_16599855_SNP [dm3] X_16705822_SNP [dm6]	A	C	1.400e^-4	0.877	DOWNSTREAM CG9672 & 1 other INTRON CG4678
2R	8968201	2R_8968201_SNP [dm3] 2R_13080696_SNP [dm6]	A	C	1.417e^-4	0.877	INTERGENIC
2L	6803334	2L_6803334_SNP [dm3] 2L_6803334_SNP [dm6]	A	G	1.418e^-4	0.877	SYNONYMOUS_CODING CG11236 UPSTREAM CG17377 DOWNSTREAM CG17375	regulatory region REDfly_CRMs
2L	6803338	2L_6803338_SNP [dm3] 2L_6803338_SNP [dm6]	T	C	1.418e^-4	0.877	SYNONYMOUS_CODING CG11236 UPSTREAM CG17377 DOWNSTREAM CG17375	regulatory region REDfly_CRMs
3L	2710021	3L_2710021_SNP [dm3] 3L_2710021_SNP [dm6]	G	A	1.429e^-4	0.877	INTRON Fife
2R	8967602	2R_8967602_SNP [dm3] 2R_13080097_SNP [dm6]	A	T	1.431e^-4	0.877	UPSTREAM Drl-2 INTERGENIC
3L	7294320	3L_7294320_SNP [dm3] 3L_7301220_SNP [dm6]	G	A	1.431e^-4	0.877	INTRON unc-13-4A
2L	10054103	2L_10054103_SNP [dm3] 2L_10054103_SNP [dm6]	T	A	1.434e^-4	0.877	UPSTREAM Cpr31A DOWNSTREAM CR44875 INTERGENIC
3L	13904468	3L_13904468_SNP [dm3] 3L_13911368_SNP [dm6]	T	C	1.436e^-4	0.877	INTRON Rgl
3R	25027610	3R_25027610_SNP [dm3] 3R_29201888_SNP [dm6]	G	A	1.438e^-4	0.877	SYNONYMOUS_CODING Mesh1 DOWNSTREAM CG14508 & 1 other	TF binding site mE1_TFBS_cad
X	5879940	X_5879940_SNP [dm3] X_5985907_SNP [dm6]	T	C	1.440e^-4	0.877	SYNONYMOUS_CODING Grip
3R	13249917	3R_13249917_SNP [dm3] 3R_17424195_SNP [dm6]	C	T	1.449e^-4	0.877	INTERGENIC
3R	22268966	3R_22268966_DEL [dm3] 3R_26443244_DEL [dm6]	GCCGAATGAAAG...	G	1.450e^-4	0.877	INTRON tx
3L	18442903	3L_18442903_SNP [dm3] 3L_18449803_SNP [dm6]	G	A	1.450e^-4	0.877	INTERGENIC
3R	4971394	3R_4971394_SNP [dm3] 3R_9145672_SNP [dm6]	C	T	1.466e^-4	0.877	INTRON pum	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11421964	3R_11421964_SNP [dm3] 3R_15596242_SNP [dm6]	A	T	1.469e^-4	0.877	INTERGENIC
3R	12456450	3R_12456450_SNP [dm3] 3R_16630728_SNP [dm6]	G	A	1.473e^-4	0.877	INTRON Fas1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	19028010	3L_19028010_SNP [dm3] 3L_19034910_SNP [dm6]	C	T	1.478e^-4	0.877	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7069003	2R_7069003_SNP [dm3] 2R_11181498_SNP [dm6]	T	A	1.481e^-4	0.877	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	13651038	3L_13651038_SNP [dm3] 3L_13657938_SNP [dm6]	C	T	1.484e^-4	0.877	INTRON bru-3	TF binding site mE1_TFBS_chinmo
3L	3026654	3L_3026654_SNP [dm3] 3L_3026654_SNP [dm6]	G	A	1.493e^-4	0.877	UPSTREAM aly INTERGENIC
X	9422087	X_9422087_SNP [dm3] X_9528054_SNP [dm6]	T	G	1.507e^-4	0.877	INTRON CG32700
2R	8967889	2R_8967889_SNP [dm3] 2R_13080384_SNP [dm6]	A	T	1.508e^-4	0.877	UPSTREAM Drl-2 INTERGENIC
2L	19753862	2L_19753862_SNP [dm3] 2L_19753862_SNP [dm6]	T	A	1.515e^-4	0.877	NON_SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9380805	2R_9380805_SNP [dm3] 2R_13493300_SNP [dm6]	T	G	1.516e^-4	0.877	INTRON bbc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18450195	3L_18450195_SNP [dm3] 3L_18457095_SNP [dm6]	T	C	1.535e^-4	0.877	UPSTREAM CR44670 DOWNSTREAM CR44671 INTERGENIC
3R	24488254	3R_24488254_SNP [dm3] 3R_28662532_SNP [dm6]	A	C	1.541e^-4	0.877	INTERGENIC
2L	16801956	2L_16801956_SNP [dm3] 2L_16801956_SNP [dm6]	A	G	1.543e^-4	0.877	DOWNSTREAM CG13280 & 1 other INTERGENIC
3L	18442895	3L_18442895_SNP [dm3] 3L_18449795_SNP [dm6]	C	A	1.545e^-4	0.877	INTERGENIC
3R	23670265	3R_23670265_SNP [dm3] 3R_27844543_SNP [dm6]	C	T	1.548e^-4	0.877	UPSTREAM Or98P INTRON CG34353
X	3656260	X_3656260_SNP [dm3] X_3762227_SNP [dm6]	C	T	1.549e^-4	0.877	INTRON tlk	TF binding site BDTNP1_TFBS_dl
2R	9135885	2R_9135885_SNP [dm3] 2R_13248380_SNP [dm6]	G	A	1.557e^-4	0.877	DOWNSTREAM Mp20 & 1 other INTRON Mp20
X	7719954	X_7719954_DEL [dm3] X_7825921_DEL [dm6]	TA	T	1.561e^-4	0.877	UPSTREAM CG1402 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	11421955	3R_11421955_SNP [dm3] 3R_15596233_SNP [dm6]	A	G	1.562e^-4	0.877	INTERGENIC
3L	16175700	3L_16175700_SNP [dm3] 3L_16182600_SNP [dm6]	T	C	1.563e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10668901	2L_10668901_SNP [dm3] 2L_10668901_SNP [dm6]	C	A	1.569e^-4	0.877	SYNONYMOUS_CODING CG31871
3L	11632796	3L_11632796_SNP [dm3] 3L_11639696_SNP [dm6]	G	T	1.571e^-4	0.877	INTRON CG32091
2R	19109717	2R_19109717_SNP [dm3] 2R_23222194_SNP [dm6]	C	A	1.571e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6242037	2R_6242037_SNP [dm3] 2R_10354532_SNP [dm6]	A	T	1.574e^-4	0.877	DOWNSTREAM CG12902 & 2 others INTRON CG42732
2R	20811750	2R_20811750_SNP [dm3] 2R_24924227_SNP [dm6]	G	A	1.578e^-4	0.877	NON_SYNONYMOUS_CODING pain UPSTREAM pain INTRON pain	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19104829	2R_19104829_SNP [dm3] 2R_23217306_SNP [dm6]	C	G	1.582e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5814210	3L_5814210_SNP [dm3] 3L_5821110_SNP [dm6]	T	C	1.586e^-4	0.877	INTRON vn
X	3656985	X_3656985_INS [dm3] X_3762952_INS [dm6]	A	AAA	1.588e^-4	0.877	INTRON tlk
3R	27030728	3R_27030728_SNP [dm3] 3R_31205006_SNP [dm6]	A	G	1.594e^-4	0.877	INTRON chp
3R	27030729	3R_27030729_SNP [dm3] 3R_31205007_SNP [dm6]	T	C	1.594e^-4	0.877	INTRON chp
3R	27030737	3R_27030737_SNP [dm3] 3R_31205015_SNP [dm6]	A	T	1.594e^-4	0.877	INTRON chp
3R	27030741	3R_27030741_SNP [dm3] 3R_31205019_SNP [dm6]	C	T	1.594e^-4	0.877	INTRON chp
3R	27031549	3R_27031549_SNP [dm3] 3R_31205827_SNP [dm6]	G	T	1.594e^-4	0.877	INTRON chp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	27032579	3R_27032579_SNP [dm3] 3R_31206857_SNP [dm6]	G	A	1.594e^-4	0.877	SYNONYMOUS_CODING chp
3R	27033306	3R_27033306_SNP [dm3] 3R_31207584_SNP [dm6]	A	T	1.594e^-4	0.877	INTRON chp
3R	3169960	3R_3169960_SNP [dm3] 3R_7344238_SNP [dm6]	G	A	1.600e^-4	0.877	UPSTREAM CG31496 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	19116247	2R_19116247_SNP [dm3] 2R_23228724_SNP [dm6]	G	A	1.603e^-4	0.877	INTERGENIC
2L	10449454	2L_10449454_SNP [dm3] 2L_10449454_SNP [dm6]	G	A	1.611e^-4	0.877	SYNONYMOUS_CODING loh DOWNSTREAM ppk10	TF binding site mE1_TFBS_cad
2R	11746515	2R_11746515_SNP [dm3] 2R_15859010_SNP [dm6]	A	C	1.613e^-4	0.877	INTRON Gpo-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11563184	2L_11563184_SNP [dm3] 2L_11563184_SNP [dm6]	A	G	1.627e^-4	0.877	INTERGENIC
3L	1870610	3L_1870610_SNP [dm3] 3L_1870610_SNP [dm6]	T	C	1.634e^-4	0.877	SYNONYMOUS_CODING CG13924 DOWNSTREAM dre4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	1594548	2R_1594548_SNP [dm3] 2R_5707043_SNP [dm6]	C	T	1.655e^-4	0.877	UTR_3_PRIME ap DOWNSTREAM ap
2R	1594550	2R_1594550_SNP [dm3] 2R_5707045_SNP [dm6]	A	T	1.655e^-4	0.877	UTR_3_PRIME ap DOWNSTREAM ap
X	8114889	X_8114889_SNP [dm3] X_8220856_SNP [dm6]	G	A	1.662e^-4	0.877	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18113654	2R_18113654_SNP [dm3] 2R_22226149_SNP [dm6]	G	A	1.662e^-4	0.877	SYNONYMOUS_CODING Oatp58Dc
3R	12074700	3R_12074700_SNP [dm3] 3R_16248978_SNP [dm6]	C	T	1.665e^-4	0.877	INTRON tara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
3R	3342527	3R_3342527_SNP [dm3] 3R_7516805_SNP [dm6]	C	G	1.676e^-4	0.877	INTERGENIC
2R	18143056	2R_18143056_SNP [dm3] 2R_22255551_SNP [dm6]	G	A	1.677e^-4	0.877	INTRON dve	TF binding site mE1_TFBS_sens
X	20231658	X_20231658_SNP [dm3] X_20360631_SNP [dm6]	G	T	1.688e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	3331462	3R_3331462_SNP [dm3] 3R_7505740_SNP [dm6]	T	A	1.688e^-4	0.877	UPSTREAM alpha-Est9 INTERGENIC
2R	7069683	2R_7069683_SNP [dm3] 2R_11182178_SNP [dm6]	T	C	1.693e^-4	0.877	INTRON shn	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
3L	8667621	3L_8667621_SNP [dm3] 3L_8674521_SNP [dm6]	A	G	1.697e^-4	0.877	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	11964907	3R_11964907_SNP [dm3] 3R_16139185_SNP [dm6]	A	G	1.698e^-4	0.877	INTRON Sb
2R	14457924	2R_14457924_SNP [dm3] 2R_18570419_SNP [dm6]	C	G	1.701e^-4	0.877	INTRON GEFmeso
2R	18140810	2R_18140810_SNP [dm3] 2R_22253305_SNP [dm6]	A	G	1.705e^-4	0.877	INTRON dve	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3R	27033310	3R_27033310_SNP [dm3] 3R_31207588_SNP [dm6]	G	A	1.706e^-4	0.877	INTRON chp
2L	6803344	2L_6803344_SNP [dm3] 2L_6803344_SNP [dm6]	A	C	1.714e^-4	0.877	NON_SYNONYMOUS_CODING CG11236 UPSTREAM CG17377 DOWNSTREAM CG17375	regulatory region REDfly_CRMs
2L	6803270	2L_6803270_SNP [dm3] 2L_6803270_SNP [dm6]	C	T	1.716e^-4	0.877	UPSTREAM CG17377 INTRON CG11236	regulatory region REDfly_CRMs
2R	14570464	2R_14570464_SNP [dm3] 2R_18682959_SNP [dm6]	T	A	1.720e^-4	0.877	SYNONYMOUS_CODING CG44434 UTR_5_PRIME CG44435
3R	27069271	3R_27069271_SNP [dm3] 3R_31243549_SNP [dm6]	T	G	1.726e^-4	0.877	INTRON qless
3R	13454440	3R_13454440_SNP [dm3] 3R_17628718_SNP [dm6]	T	G	1.729e^-4	0.877	SYNONYMOUS_CODING CG14325 DOWNSTREAM tRNA:V4:90C
3L	18640244	3L_18640244_SNP [dm3] 3L_18647144_SNP [dm6]	T	G	1.738e^-4	0.877	INTRON MYPT-75D
2R	7801889	2R_7801889_DEL [dm3] 2R_11914384_DEL [dm6]	TT	T	1.741e^-4	0.877	INTERGENIC
2L	4527861	2L_4527861_SNP [dm3] 2L_4527861_SNP [dm6]	A	G	1.744e^-4	0.877	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6246729	2R_6246729_SNP [dm3] 2R_10359224_SNP [dm6]	A	G	1.744e^-4	0.877	UPSTREAM CG43396 INTRON CG42732	TF binding site BDTNP1_TFBS_twi
2R	19837174	2R_19837174_SNP [dm3] 2R_23949651_SNP [dm6]	C	T	1.749e^-4	0.877	SPLICE_SITE_REGION CG2970 UPSTREAM CG13565 & 1 other INTRON CG2970	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10646022	2L_10646022_SNP [dm3] 2L_10646022_SNP [dm6]	T	A	1.752e^-4	0.877	UPSTREAM CG17097 DOWNSTREAM CG18284 INTERGENIC
2R	8526204	2R_8526204_SNP [dm3] 2R_12638699_SNP [dm6]	C	T	1.752e^-4	0.877	SYNONYMOUS_CODING Iswi	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3692346	2R_3692346_SNP [dm3] 2R_7804841_SNP [dm6]	G	A	1.775e^-4	0.877	START_GAINED Nop17l UTR_5_PRIME Nop17l	TF binding site mE1_TFBS_cad
X	7436558	X_7436558_SNP [dm3] X_7542525_SNP [dm6]	T	A	1.777e^-4	0.877	INTRON CG32719	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	21203507	3L_21203507_SNP [dm3] 3L_21210407_SNP [dm6]	T	A	1.818e^-4	0.877	UTR_5_PRIME CG10508 UPSTREAM CG10510
3L	18442974	3L_18442974_SNP [dm3] 3L_18449874_SNP [dm6]	A	C	1.821e^-4	0.877	INTERGENIC
3R	3330400	3R_3330400_SNP [dm3] 3R_7504678_SNP [dm6]	T	C	1.824e^-4	0.877	UTR_5_PRIME alpha-Est9
X	3657060	X_3657060_SNP [dm3] X_3763027_SNP [dm6]	T	C	1.831e^-4	0.877	INTRON tlk
3R	11461608	3R_11461608_SNP [dm3] 3R_15635886_SNP [dm6]	A	C	1.836e^-4	0.877	NON_SYNONYMOUS_CODING CG43335	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16182239	3L_16182239_SNP [dm3] 3L_16189139_SNP [dm6]	C	G	1.841e^-4	0.877	INTERGENIC
3L	7969311	3L_7969311_SNP [dm3] 3L_7976211_SNP [dm6]	G	A	1.845e^-4	0.877	UPSTREAM CG8209 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk
3R	25313015	3R_25313015_SNP [dm3] 3R_29487293_SNP [dm6]	T	C	1.854e^-4	0.877	DOWNSTREAM Ptp99A INTRON CG2321
3R	14340192	3R_14340192_SNP [dm3] 3R_18514470_SNP [dm6]	G	C	1.855e^-4	0.877	UTR_5_PRIME fru INTRON fru
3L	2829423	3L_2829423_SNP [dm3] 3L_2829423_SNP [dm6]	A	T	1.855e^-4	0.877	INTRON CG43444
X	2489485	X_2489485_SNP [dm3] X_2595452_SNP [dm6]	G	A	1.858e^-4	0.877	INTRON egh
2L	17647040	2L_17647040_SNP [dm3] 2L_17647040_SNP [dm6]	A	G	1.858e^-4	0.877	DOWNSTREAM CadN INTERGENIC
X	2607510	X_2607510_SNP [dm3] X_2713477_SNP [dm6]	G	T	1.867e^-4	0.877	UPSTREAM CG2694 INTRON CG2685	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19382394	2L_19382394_SNP [dm3] 2L_19382394_SNP [dm6]	G	A	1.870e^-4	0.877	DOWNSTREAM fon INTRON CG17350	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2113886	3L_2113886_SNP [dm3] 3L_2113886_SNP [dm6]	G	A	1.870e^-4	0.877	INTRON sls
X	13876687	X_13876687_SNP [dm3] X_13982654_SNP [dm6]	T	A	1.876e^-4	0.877	INTRON mamo
3L	8667598	3L_8667598_SNP [dm3] 3L_8674498_SNP [dm6]	C	T	1.878e^-4	0.877	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	3339270	2L_3339270_SNP [dm3] 2L_3339270_SNP [dm6]	C	T	1.880e^-4	0.877	INTRON E23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3L	5810524	3L_5810524_SNP [dm3] 3L_5817424_SNP [dm6]	C	T	1.886e^-4	0.877	INTRON vn	regulatory region REDfly_CRMs
3L	5810529	3L_5810529_SNP [dm3] 3L_5817429_SNP [dm6]	T	A	1.886e^-4	0.877	INTRON vn	regulatory region REDfly_CRMs
3R	24831192	3R_24831192_DEL [dm3] 3R_29005470_DEL [dm6]	GTGATGGG	G	1.891e^-4	0.877	INTRON wat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	3346793	3R_3346793_SNP [dm3] 3R_7521071_SNP [dm6]	A	G	1.895e^-4	0.877	SYNONYMOUS_CODING alpha-Est7	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11101674	3L_11101674_SNP [dm3] 3L_11108574_SNP [dm6]	A	G	1.896e^-4	0.877	SYNONYMOUS_CODING CG12522 UPSTREAM CG32073 DOWNSTREAM CG34012
3L	16531146	3L_16531146_SNP [dm3] 3L_16538046_SNP [dm6]	G	C	1.898e^-4	0.877	INTRON CG43373
2L	10631428	2L_10631428_SNP [dm3] 2L_10631428_SNP [dm6]	T	C	1.905e^-4	0.877	UPSTREAM CG7329 INTRON CG7329
X	12189059	X_12189059_SNP [dm3] X_12295026_SNP [dm6]	T	A	1.919e^-4	0.877	INTRON Ten-a
2R	8969599	2R_8969599_SNP [dm3] 2R_13082094_SNP [dm6]	T	A	1.921e^-4	0.877	INTERGENIC
2R	6990784	2R_6990784_SNP [dm3] 2R_11103279_SNP [dm6]	G	C	1.923e^-4	0.877	INTRON luna	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	7952814	3L_7952814_SNP [dm3] 3L_7959714_SNP [dm6]	G	A	1.929e^-4	0.877	INTERGENIC
2L	10750635	2L_10750635_SNP [dm3] 2L_10750635_SNP [dm6]	G	A	1.930e^-4	0.877	INTRON CG17124
2L	17431606	2L_17431606_SNP [dm3] 2L_17431606_SNP [dm6]	C	A	1.944e^-4	0.877	INTRON Dif
3R	7283582	3R_7283582_SNP [dm3] 3R_11457860_SNP [dm6]	A	T	1.956e^-4	0.877	UTR_5_PRIME PGRP-LB INTRON CG17230 & 1 other
3L	9581563	3L_9581563_SNP [dm3] 3L_9588463_SNP [dm6]	T	C	1.956e^-4	0.877	INTRON CG42673
3L	2777212	3L_2777212_SNP [dm3] 3L_2777212_SNP [dm6]	A	G	1.959e^-4	0.877	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14681749	2L_14681749_SNP [dm3] 2L_14681749_SNP [dm6]	G	A	1.959e^-4	0.877	INTRON osp
3L	16981203	3L_16981203_SNP [dm3] 3L_16988103_SNP [dm6]	A	T	1.960e^-4	0.877	INTRON Exn
2R	18142511	2R_18142511_SNP [dm3] 2R_22255006_SNP [dm6]	C	G	1.961e^-4	0.877	INTRON dve	TF binding site mE1_TFBS_chinmo
3L	18442909	3L_18442909_SNP [dm3] 3L_18449809_SNP [dm6]	T	A	1.963e^-4	0.877	INTERGENIC
3L	1905023	3L_1905023_SNP [dm3] 3L_1905023_SNP [dm6]	G	A	1.963e^-4	0.877	INTRON CG1887	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11501694	2L_11501694_SNP [dm3] 2L_11501694_SNP [dm6]	A	C	1.970e^-4	0.877	UPSTREAM spz4 INTERGENIC
3R	9753275	3R_9753275_SNP [dm3] 3R_13927553_SNP [dm6]	A	G	1.977e^-4	0.877	INTERGENIC
3R	24472329	3R_24472329_SNP [dm3] 3R_28646607_SNP [dm6]	G	A	1.983e^-4	0.877	INTERGENIC
3L	5810532	3L_5810532_SNP [dm3] 3L_5817432_SNP [dm6]	G	T	1.984e^-4	0.877	INTRON vn	regulatory region REDfly_CRMs
2L	16428835	2L_16428835_SNP [dm3] 2L_16428835_SNP [dm6]	T	C	1.989e^-4	0.877	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19323216	2R_19323216_SNP [dm3] 2R_23435693_SNP [dm6]	C	T	2.001e^-4	0.877	INTERGENIC
3R	14940038	3R_14940038_SNP [dm3] 3R_19114316_SNP [dm6]	C	A	2.013e^-4	0.877	INTRON CG6040
X	5862280	X_5862280_SNP [dm3] X_5968247_SNP [dm6]	A	T	2.016e^-4	0.877	INTRON Grip
3R	18786215	3R_18786215_INS [dm3] 3R_22960493_INS [dm6]	C	CAAAGCC	2.020e^-4	0.877	UTR_3_PRIME klg
3R	14940692	3R_14940692_SNP [dm3] 3R_19114970_SNP [dm6]	T	A	2.024e^-4	0.877	INTRON CG6040
3R	19952169	3R_19952169_SNP [dm3] 3R_24126447_SNP [dm6]	C	T	2.025e^-4	0.877	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10889679	2R_10889679_SNP [dm3] 2R_15002174_SNP [dm6]	C	T	2.028e^-4	0.877	INTERGENIC
3L	8675264	3L_8675264_SNP [dm3] 3L_8682164_SNP [dm6]	T	G	2.028e^-4	0.877	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd
3R	7287858	3R_7287858_SNP [dm3] 3R_11462136_SNP [dm6]	A	G	2.029e^-4	0.877	INTRON CG17230
3L	8671773	3L_8671773_SNP [dm3] 3L_8678673_SNP [dm6]	A	G	2.030e^-4	0.877	UTR_3_PRIME h	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	19050900	3L_19050900_SNP [dm3] 3L_19057800_SNP [dm6]	C	A	2.039e^-4	0.877	INTERGENIC
3R	11348886	3R_11348886_SNP [dm3] 3R_15523164_SNP [dm6]	T	C	2.045e^-4	0.877	INTERGENIC
2R	12518128	2R_12518128_SNP [dm3] 2R_16630623_SNP [dm6]	A	T	2.049e^-4	0.877	INTRON Alk	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	5394863	3L_5394863_SNP [dm3] 3L_5401763_SNP [dm6]	A	T	2.049e^-4	0.877	INTERGENIC
3L	2187699	3L_2187699_SNP [dm3] 3L_2187699_SNP [dm6]	C	G	2.051e^-4	0.877	DOWNSTREAM CG13810 INTERGENIC
2L	8117890	2L_8117890_SNP [dm3] 2L_8117890_SNP [dm6]	T	A	2.052e^-4	0.877	INTRON mon2
2L	8117891	2L_8117891_SNP [dm3] 2L_8117891_SNP [dm6]	A	T	2.052e^-4	0.877	INTRON mon2
2L	9413057	2L_9413057_SNP [dm3] 2L_9413057_SNP [dm6]	G	A	2.056e^-4	0.877	INTRON Shawl
2L	10835284	2L_10835284_SNP [dm3] 2L_10835284_SNP [dm6]	A	C	2.067e^-4	0.877	INTRON Nos
X	4166673	X_4166673_SNP [dm3] X_4272640_SNP [dm6]	G	A	2.068e^-4	0.877	INTERGENIC
3L	11438113	3L_11438113_SNP [dm3] 3L_11445013_SNP [dm6]	C	G	2.082e^-4	0.877	UPSTREAM CG7557 EXON CR44549
3R	9714683	3R_9714683_SNP [dm3] 3R_13888961_SNP [dm6]	C	A	2.086e^-4	0.877	INTERGENIC
2L	4384072	2L_4384072_SNP [dm3] 2L_4384072_SNP [dm6]	A	C	2.086e^-4	0.877	INTRON CG3338	TF binding site mE1_TFBS_cad
3L	899757	3L_899757_SNP [dm3] 3L_899757_SNP [dm6]	T	C	2.086e^-4	0.877	DOWNSTREAM CG34057 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13052217	2R_13052217_SNP [dm3] 2R_17164712_SNP [dm6]	T	C	2.089e^-4	0.877	DOWNSTREAM CG10953 INTERGENIC
X	17016729	X_17016729_DEL [dm3] X_17122696_DEL [dm6]	AGTTGGGTTTGGTTGGGGAT...	A	2.090e^-4	0.877	INTRON CG5004	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16231471	2R_16231471_SNP [dm3] 2R_20343966_SNP [dm6]	A	G	2.091e^-4	0.877	SYNONYMOUS_CODING CG13870	TF binding site mE1_TFBS_inv
2L	19383474	2L_19383474_SNP [dm3] 2L_19383474_SNP [dm6]	C	A	2.098e^-4	0.877	UTR_3_PRIME fon DOWNSTREAM fon & 1 other
X	2447639	X_2447639_SNP [dm3] X_2553606_SNP [dm6]	C	T	2.109e^-4	0.877	UPSTREAM Pdfr INTRON Pdfr
3L	8667626	3L_8667626_SNP [dm3] 3L_8674526_SNP [dm6]	G	T	2.110e^-4	0.877	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	18143409	2R_18143409_SNP [dm3] 2R_22255904_SNP [dm6]	G	T	2.111e^-4	0.877	INTRON dve	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6458492	2L_6458492_SNP [dm3] 2L_6458492_SNP [dm6]	A	G	2.115e^-4	0.877	SYNONYMOUS_CODING frj DOWNSTREAM CG16947
2R	9450758	2R_9450758_SNP [dm3] 2R_13563253_SNP [dm6]	C	T	2.116e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	3339181	2L_3339181_SNP [dm3] 2L_3339181_SNP [dm6]	T	C	2.118e^-4	0.877	INTRON E23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
2R	6986974	2R_6986974_INS [dm3] 2R_11099469_INS [dm6]	TGTT	AACAAAG	2.128e^-4	0.877	INTRON luna
2R	14457908	2R_14457908_SNP [dm3] 2R_18570403_SNP [dm6]	G	A	2.135e^-4	0.877	INTRON GEFmeso
X	20521353	X_20521353_SNP [dm3] X_20650326_SNP [dm6]	T	G	2.145e^-4	0.877	INTERGENIC
3R	22055909	3R_22055909_SNP [dm3] 3R_26230187_SNP [dm6]	T	G	2.147e^-4	0.877	UPSTREAM CG12290 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	17419984	2L_17419984_SNP [dm3] 2L_17419984_SNP [dm6]	A	C	2.148e^-4	0.877	INTRON Dif
X	11152161	X_11152161_DEL [dm3] X_11258128_DEL [dm6]	CGCTGAGTTC	C	2.153e^-4	0.877	INTRON CG44422
3L	3188454	3L_3188454_SNP [dm3] 3L_3188454_SNP [dm6]	A	G	2.155e^-4	0.877	SYNONYMOUS_CODING CG42525 DOWNSTREAM CG14957	TF binding site mE1_TFBS_sens
2L	2435542	2L_2435542_SNP [dm3] 2L_2435542_SNP [dm6]	T	G	2.157e^-4	0.877	INTRON dpp	TF binding site mE1_TFBS_cnc
3R	14130638	3R_14130638_SNP [dm3] 3R_18304916_SNP [dm6]	T	C	2.158e^-4	0.877	INTRON PKD	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13331807	3L_13331807_SNP [dm3] 3L_13338707_SNP [dm6]	A	T	2.162e^-4	0.877	INTERGENIC
3R	21725180	3R_21725180_SNP [dm3] 3R_25899458_SNP [dm6]	C	T	2.169e^-4	0.877	SYNONYMOUS_CODING MCO3 UPSTREAM CG31091
2R	17780258	2R_17780258_DEL [dm3] 2R_21892753_DEL [dm6]	AA	A	2.172e^-4	0.877	INTRON Fili
2L	12822160	2L_12822160_SNP [dm3] 2L_12822160_SNP [dm6]	C	G	2.174e^-4	0.877	UTR_5_PRIME kek1	TF binding site BDTNP1_TFBS_dl
2R	18146523	2R_18146523_SNP [dm3] 2R_22259018_SNP [dm6]	C	T	2.175e^-4	0.877	INTRON dve
2R	1942958	2R_1942958_SNP [dm3] 2R_6055453_SNP [dm6]	C	A	2.177e^-4	0.877	INTRON CCHa2-R
3R	9313227	3R_9313227_SNP [dm3] 3R_13487505_SNP [dm6]	C	A	2.178e^-4	0.877	INTERGENIC
3L	16875744	3L_16875744_SNP [dm3] 3L_16882644_SNP [dm6]	A	G	2.181e^-4	0.877	INTRON Lmpt
X	13047635	X_13047635_DEL [dm3] X_13153602_DEL [dm6]	AACATCATGGTCGTTCTTCT...	A	2.183e^-4	0.877	UTR_3_PRIME CG4318 DOWNSTREAM CG32645
2L	12331863	2L_12331863_INS [dm3] 2L_12331863_INS [dm6]	T	TCT	2.183e^-4	0.877	INTERGENIC
X	19994929	X_19994929_SNP [dm3] X_20100896_SNP [dm6]	C	T	2.193e^-4	0.877	INTERGENIC	transposable element FlyBase
2R	15469124	2R_15469124_DEL [dm3] 2R_19581619_DEL [dm6]	CACTGTCTATC...	C	2.205e^-4	0.877	INTRON sm
2R	11340718	2R_11340718_SNP [dm3] 2R_15453213_SNP [dm6]	A	C	2.209e^-4	0.877	INTRON CG43729
X	18693083	X_18693083_SNP [dm3] X_18799050_SNP [dm6]	G	C	2.212e^-4	0.877	INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11699932	2L_11699932_SNP [dm3] 2L_11699932_SNP [dm6]	G	T	2.217e^-4	0.877	INTERGENIC
3L	17274554	3L_17274554_DEL [dm3] 3L_17281454_DEL [dm6]	ATACTTCATACTTCA...	A	2.227e^-4	0.877	INTERGENIC
X	10150267	X_10150267_SNP [dm3] X_10256234_SNP [dm6]	C	A	2.233e^-4	0.877	UTR_5_PRIME Hk UPSTREAM CR43959 INTRON Hk
3R	13250623	3R_13250623_SNP [dm3] 3R_17424901_SNP [dm6]	C	G	2.246e^-4	0.877	UPSTREAM CG5873 INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	10611874	2L_10611874_SNP [dm3] 2L_10611874_SNP [dm6]	A	G	2.251e^-4	0.877	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13490922	3L_13490922_SNP [dm3] 3L_13497822_SNP [dm6]	G	A	2.257e^-4	0.877	INTRON Tgi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1236974	2R_1236974_SNP [dm3] 2R_5349469_SNP [dm6]	T	C	2.261e^-4	0.877	INTERGENIC	transposable element FlyBase
X	12562753	X_12562753_SNP [dm3] X_12668720_SNP [dm6]	G	A	2.268e^-4	0.877	INTRON Tis11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9019876	3R_9019876_SNP [dm3] 3R_13194154_SNP [dm6]	C	T	2.271e^-4	0.877	INTERGENIC
3L	7087974	3L_7087974_SNP [dm3] 3L_7094874_SNP [dm6]	A	T	2.276e^-4	0.877	UTR_5_PRIME form3	TF binding site BDTNP1_TFBS_dl
2L	9413663	2L_9413663_SNP [dm3] 2L_9413663_SNP [dm6]	G	A	2.278e^-4	0.877	INTRON Shawl
2R	6994120	2R_6994120_SNP [dm3] 2R_11106615_SNP [dm6]	A	C	2.279e^-4	0.877	UTR_5_PRIME luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	13250664	3R_13250664_SNP [dm3] 3R_17424942_SNP [dm6]	T	C	2.282e^-4	0.877	UPSTREAM CG5873 INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	17376106	3R_17376106_SNP [dm3] 3R_21550384_SNP [dm6]	G	A	2.286e^-4	0.877	INTRON slou
2R	11334249	2R_11334249_SNP [dm3] 2R_15446744_SNP [dm6]	T	A	2.292e^-4	0.877	INTRON CG43729
3L	1839352	3L_1839352_SNP [dm3] 3L_1839352_SNP [dm6]	A	C	2.292e^-4	0.877	DOWNSTREAM Cpr62Bc INTERGENIC
3L	11525758	3L_11525758_SNP [dm3] 3L_11532658_SNP [dm6]	T	G	2.293e^-4	0.877	INTRON Mob2
3R	16331053	3R_16331053_SNP [dm3] 3R_20505331_SNP [dm6]	T	C	2.299e^-4	0.877	SYNONYMOUS_CODING Or92a
2L	8982616	2L_8982616_SNP [dm3] 2L_8982616_SNP [dm6]	C	T	2.300e^-4	0.877	INTRON CG13101
2L	17413510	2L_17413510_SNP [dm3] 2L_17413510_SNP [dm6]	G	T	2.306e^-4	0.877	UTR_3_PRIME Dif UPSTREAM CG31803 DOWNSTREAM CG15141
3L	11747243	3L_11747243_SNP [dm3] 3L_11754143_SNP [dm6]	A	G	2.320e^-4	0.877	INTRON CG6024
3R	27017683	3R_27017683_SNP [dm3] 3R_31191961_SNP [dm6]	C	A	2.321e^-4	0.877	INTRON mesh	TF binding site BDTNP1_TFBS_hb
3R	25458996	3R_25458996_SNP [dm3] 3R_29633274_SNP [dm6]	C	T	2.326e^-4	0.877	INTRON Dop1R2
3R	20127234	3R_20127234_SNP [dm3] 3R_24301512_SNP [dm6]	A	C	2.327e^-4	0.877	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14462649	2R_14462649_SNP [dm3] 2R_18575144_SNP [dm6]	T	C	2.330e^-4	0.877	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1024826	3L_1024826_SNP [dm3] 3L_1024826_SNP [dm6]	G	C	2.338e^-4	0.877	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	21187594	3L_21187594_SNP [dm3] 3L_21194494_SNP [dm6]	A	G	2.342e^-4	0.877	DOWNSTREAM park INTERGENIC
3R	14340205	3R_14340205_SNP [dm3] 3R_18514483_SNP [dm6]	G	A	2.343e^-4	0.877	UTR_5_PRIME fru INTRON fru
3L	7130185	3L_7130185_SNP [dm3] 3L_7137085_SNP [dm6]	T	C	2.343e^-4	0.877	INTRON melt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18144607	2R_18144607_SNP [dm3] 2R_22257102_SNP [dm6]	C	G	2.344e^-4	0.877	INTRON dve	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11570285	2L_11570285_SNP [dm3] 2L_11570285_SNP [dm6]	T	A	2.354e^-4	0.877	INTERGENIC	TF binding site mE1_TFBS_inv
X	12032051	X_12032051_SNP [dm3] X_12138018_SNP [dm6]	G	A	2.361e^-4	0.877	INTRON Ten-a
3L	21187692	3L_21187692_SNP [dm3] 3L_21194592_SNP [dm6]	G	A	2.368e^-4	0.877	DOWNSTREAM park INTERGENIC	TF binding site mE1_TFBS_cad
3L	12520191	3L_12520191_INS [dm3] 3L_12527091_INS [dm6]	A	ACTT	2.372e^-4	0.877	UPSTREAM eIF-2beta DOWNSTREAM nst INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13088513	3R_13088513_SNP [dm3] 3R_17262791_SNP [dm6]	T	C	2.377e^-4	0.877	INTRON beat-IIb
3R	16064806	3R_16064806_SNP [dm3] 3R_20239084_SNP [dm6]	G	C	2.380e^-4	0.877	INTRON Nlg4
2L	17652431	2L_17652431_SNP [dm3] 2L_17652431_SNP [dm6]	A	G	2.383e^-4	0.877	INTRON CadN
2L	15806186	2L_15806186_SNP [dm3] 2L_15806186_SNP [dm6]	G	A	2.390e^-4	0.877	DOWNSTREAM CR44602 INTERGENIC
X	13968466	X_13968466_SNP [dm3] X_14074433_SNP [dm6]	T	C	2.390e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6993044	2R_6993044_DEL [dm3] 2R_11105539_DEL [dm6]	TT	T	2.390e^-4	0.877	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	13971523	X_13971523_SNP [dm3] X_14077490_SNP [dm6]	G	A	2.392e^-4	0.877	INTERGENIC
2L	9413364	2L_9413364_SNP [dm3] 2L_9413364_SNP [dm6]	C	T	2.395e^-4	0.877	INTRON Shawl
3R	8431250	3R_8431250_SNP [dm3] 3R_12605528_SNP [dm6]	T	C	2.400e^-4	0.877	INTERGENIC
3R	20167415	3R_20167415_SNP [dm3] 3R_24341693_SNP [dm6]	G	A	2.408e^-4	0.877	UPSTREAM Ms INTRON Ms	TF binding site mE1_TFBS_cad
3R	25349865	3R_25349865_INS [dm3] 3R_29524143_INS [dm6]	T	TA	2.409e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12576702	2R_12576702_DEL [dm3] 2R_16689197_DEL [dm6]	TGTGCTGGTTTTTGCCCTCT...	T	2.410e^-4	0.877	INTRON CG30463
3L	10352376	3L_10352376_SNP [dm3] 3L_10359276_SNP [dm6]	G	C	2.411e^-4	0.877	EXON CR44327
X	12562801	X_12562801_SNP [dm3] X_12668768_SNP [dm6]	C	A	2.414e^-4	0.877	INTRON Tis11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23665578	3R_23665578_SNP [dm3] 3R_27839856_SNP [dm6]	G	T	2.420e^-4	0.877	INTRON CG34353
3L	2187844	3L_2187844_SNP [dm3] 3L_2187844_SNP [dm6]	C	T	2.435e^-4	0.877	DOWNSTREAM CG13810 INTERGENIC
3L	2818754	3L_2818754_SNP [dm3] 3L_2818754_SNP [dm6]	A	T	2.435e^-4	0.877	INTRON CG43444
2L	9013137	2L_9013137_SNP [dm3] 2L_9013137_SNP [dm6]	C	G	2.442e^-4	0.877	SYNONYMOUS_CODING Rcd-1r UTR_3_PRIME CG13102 DOWNSTREAM CG13102	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19759983	2L_19759983_SNP [dm3] 2L_19759983_SNP [dm6]	G	A	2.455e^-4	0.877	SYNONYMOUS_CODING CG10463	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9600596	3L_9600596_SNP [dm3] 3L_9607496_SNP [dm6]	C	G	2.460e^-4	0.877	SYNONYMOUS_CODING CG3280
2L	10835285	2L_10835285_SNP [dm3] 2L_10835285_SNP [dm6]	T	G	2.461e^-4	0.877	INTRON Nos
3L	13479217	3L_13479217_SNP [dm3] 3L_13486117_SNP [dm6]	T	C	2.464e^-4	0.877	UTR_5_PRIME Abp1 UPSTREAM Tgi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	10280525	2L_10280525_SNP [dm3] 2L_10280525_SNP [dm6]	G	A	2.469e^-4	0.877	SYNONYMOUS_CODING CG34043
X	15479466	X_15479466_SNP [dm3] X_15585433_SNP [dm6]	A	G	2.474e^-4	0.877	UTR_3_PRIME CG9220 DOWNSTREAM CG8097
3R	27117143	3R_27117143_SNP [dm3] 3R_31291421_SNP [dm6]	G	T	2.487e^-4	0.877	INTERGENIC
3L	20214561	3L_20214561_SNP [dm3] 3L_20221461_SNP [dm6]	A	G	2.496e^-4	0.877	UPSTREAM CG17145 INTERGENIC
2R	3694951	2R_3694951_SNP [dm3] 2R_7807446_SNP [dm6]	C	A	2.499e^-4	0.877	INTRON sax	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	3694969	2R_3694969_SNP [dm3] 2R_7807464_SNP [dm6]	T	A	2.499e^-4	0.877	INTRON sax	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	3694982	2R_3694982_SNP [dm3] 2R_7807477_SNP [dm6]	A	G	2.499e^-4	0.877	INTRON sax	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	13421691	2R_13421691_SNP [dm3] 2R_17534186_SNP [dm6]	C	T	2.504e^-4	0.877	INTRON Patronin	TF binding site BDTNP1_TFBS_dl
2R	13421714	2R_13421714_SNP [dm3] 2R_17534209_SNP [dm6]	G	A	2.504e^-4	0.877	INTRON Patronin	TF binding site BDTNP1_TFBS_dl
3R	12199840	3R_12199840_SNP [dm3] 3R_16374118_SNP [dm6]	T	A	2.505e^-4	0.877	DOWNSTREAM ss INTERGENIC
X	12562656	X_12562656_SNP [dm3] X_12668623_SNP [dm6]	C	T	2.511e^-4	0.877	INTRON Tis11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	18442967	3L_18442967_SNP [dm3] 3L_18449867_SNP [dm6]	G	A	2.518e^-4	0.877	INTERGENIC
3L	12520209	3L_12520209_SNP [dm3] 3L_12527109_SNP [dm6]	G	A	2.518e^-4	0.877	UPSTREAM eIF-2beta DOWNSTREAM nst INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12084770	X_12084770_SNP [dm3] X_12190737_SNP [dm6]	A	G	2.531e^-4	0.877	INTRON Ten-a
2L	11931180	2L_11931180_SNP [dm3] 2L_11931180_SNP [dm6]	A	G	2.545e^-4	0.877	INTERGENIC
3R	12134746	3R_12134746_SNP [dm3] 3R_16309024_SNP [dm6]	C	A	2.549e^-4	0.877	DOWNSTREAM Zip89B INTERGENIC
2L	19383448	2L_19383448_DEL [dm3] 2L_19383448_DEL [dm6]	TT	T	2.550e^-4	0.877	UTR_3_PRIME fon DOWNSTREAM fon & 1 other
X	2607497	X_2607497_SNP [dm3] X_2713464_SNP [dm6]	C	G	2.552e^-4	0.877	UPSTREAM CG2694 INTRON CG2685	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9929630	2L_9929630_SNP [dm3] 2L_9929630_SNP [dm6]	T	G	2.571e^-4	0.877	UPSTREAM CG42367 INTRON CG42366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22871860	3R_22871860_SNP [dm3] 3R_27046138_SNP [dm6]	C	A	2.589e^-4	0.877	INTRON RYa-R
2L	6458468	2L_6458468_SNP [dm3] 2L_6458468_SNP [dm6]	A	G	2.599e^-4	0.877	SYNONYMOUS_CODING frj DOWNSTREAM CG16947	TF binding site mE1_TFBS_sens
X	17565317	X_17565317_SNP [dm3] X_17671284_SNP [dm6]	A	G	2.603e^-4	0.877	SYNONYMOUS_CODING CG12990
2L	11378425	2L_11378425_SNP [dm3] 2L_11378425_SNP [dm6]	T	A	2.605e^-4	0.877	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	9411298	2R_9411298_SNP [dm3] 2R_13523793_SNP [dm6]	G	T	2.606e^-4	0.877	DOWNSTREAM CG13331 INTRON Vmat
2R	7465486	2R_7465486_SNP [dm3] 2R_11577981_SNP [dm6]	T	G	2.607e^-4	0.877	UTR_3_PRIME tou DOWNSTREAM tou
X	9930271	X_9930271_SNP [dm3] X_10036238_SNP [dm6]	G	A	2.612e^-4	0.877	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	6800771	2L_6800771_SNP [dm3] 2L_6800771_SNP [dm6]	A	C	2.612e^-4	0.877	UTR_5_PRIME CG17376 DOWNSTREAM tRNA:CR31631 & 1 other	regulatory region REDfly_CRMs
3L	11284549	3L_11284549_SNP [dm3] 3L_11291449_SNP [dm6]	A	G	2.614e^-4	0.877	INTRON CG6175
2L	19762366	2L_19762366_SNP [dm3] 2L_19762366_SNP [dm6]	A	T	2.616e^-4	0.877	INTRON fbp	TF binding site mE1_TFBS_inv
3L	3630213	3L_3630213_SNP [dm3] 3L_3630213_SNP [dm6]	G	C	2.620e^-4	0.877	INTRON dar1
3L	12834851	3L_12834851_SNP [dm3] 3L_12841751_SNP [dm6]	T	A	2.622e^-4	0.877	INTRON CG10960	TF binding site mE1_TFBS_zfh1
X	18693071	X_18693071_SNP [dm3] X_18799038_SNP [dm6]	A	C	2.624e^-4	0.877	INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	4018741	2R_4018741_SNP [dm3] 2R_8131236_SNP [dm6]	C	T	2.645e^-4	0.877	UTR_5_PRIME Pbp49 & 1 other UPSTREAM Pabp2 INTRON Pbp49 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	21920001	X_21920001_SNP [dm3] X_22518165_SNP [dm6]	T	C	2.651e^-4	0.877	INTRON CG17600
3R	9374151	3R_9374151_INS [dm3] 3R_13548429_INS [dm6]	A	AC	2.653e^-4	0.877	INTERGENIC
X	3644003	X_3644003_SNP [dm3] X_3749970_SNP [dm6]	A	T	2.655e^-4	0.877	INTRON tlk	TF binding site BDTNP1_TFBS_dl
2L	16462880	2L_16462880_SNP [dm3] 2L_16462880_SNP [dm6]	G	C	2.666e^-4	0.877	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
X	3461294	X_3461294_SNP [dm3] X_3567261_SNP [dm6]	G	A	2.670e^-4	0.877	INTRON CG32791 & 1 other
2L	19754422	2L_19754422_SNP [dm3] 2L_19754422_SNP [dm6]	C	T	2.675e^-4	0.877	INTRON CG10631	TF binding site BDTNP1_TFBS_dl
2R	17639707	2R_17639707_SNP [dm3] 2R_21752202_SNP [dm6]	A	G	2.677e^-4	0.877	INTERGENIC
2R	10435069	2R_10435069_SNP [dm3] 2R_14547564_SNP [dm6]	A	C	2.678e^-4	0.877	INTRON ttv
2R	10435070	2R_10435070_SNP [dm3] 2R_14547565_SNP [dm6]	A	G	2.678e^-4	0.877	INTRON ttv
2R	3694991	2R_3694991_SNP [dm3] 2R_7807486_SNP [dm6]	C	A	2.685e^-4	0.877	INTRON sax	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	1549956	3L_1549956_INS [dm3] 3L_1549956_INS [dm6]	C	CCGATGTGGTCGC...	2.686e^-4	0.877	INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11872416	3L_11872416_SNP [dm3] 3L_11879316_SNP [dm6]	A	T	2.692e^-4	0.877	NON_SYNONYMOUS_CODING CG14128 INTRON CG44837
3R	8670267	3R_8670267_SNP [dm3] 3R_12844545_SNP [dm6]	T	A	2.693e^-4	0.877	INTRON beat-Va
3R	13418241	3R_13418241_SNP [dm3] 3R_17592519_SNP [dm6]	A	G	2.696e^-4	0.877	INTERGENIC
2R	10435059	2R_10435059_SNP [dm3] 2R_14547554_SNP [dm6]	G	T	2.697e^-4	0.877	INTRON ttv
X	3630100	X_3630100_SNP [dm3] X_3736067_SNP [dm6]	G	A	2.706e^-4	0.877	INTRON tlk
3R	3297914	3R_3297914_SNP [dm3] 3R_7472192_SNP [dm6]	A	T	2.708e^-4	0.877	UPSTREAM tRNA:V3b:84Dc DOWNSTREAM CG1142 & 1 other INTERGENIC
3R	27016279	3R_27016279_SNP [dm3] 3R_31190557_SNP [dm6]	G	T	2.715e^-4	0.877	INTRON mesh
3R	27018015	3R_27018015_SNP [dm3] 3R_31192293_SNP [dm6]	A	G	2.715e^-4	0.877	INTRON mesh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	27021220	3R_27021220_SNP [dm3] 3R_31195498_SNP [dm6]	T	G	2.715e^-4	0.877	UTR_5_PRIME mesh UPSTREAM mesh	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	3188490	3L_3188490_SNP [dm3] 3L_3188490_SNP [dm6]	G	A	2.716e^-4	0.877	SYNONYMOUS_CODING CG42525 DOWNSTREAM CG14957	TF binding site mE1_TFBS_sens
3R	12676548	3R_12676548_DEL [dm3] 3R_16850826_DEL [dm6]	GG	G	2.728e^-4	0.877	INTRON iab-8 EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_Trl
2R	3694962	2R_3694962_SNP [dm3] 2R_7807457_SNP [dm6]	A	G	2.731e^-4	0.877	INTRON sax	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	3630215	3L_3630215_SNP [dm3] 3L_3630215_SNP [dm6]	G	A	2.734e^-4	0.877	INTRON dar1
2R	4917891	2R_4917891_SNP [dm3] 2R_9030386_SNP [dm6]	C	T	2.735e^-4	0.877	INTRON CG8170
3L	2759673	3L_2759673_SNP [dm3] 3L_2759673_SNP [dm6]	A	T	2.748e^-4	0.877	INTRON Mrtf
3R	26668035	3R_26668035_SNP [dm3] 3R_30842313_SNP [dm6]	C	T	2.765e^-4	0.877	DOWNSTREAM CG15544 INTERGENIC	TF binding site mE1_TFBS_cad
2L	16779496	2L_16779496_SNP [dm3] 2L_16779496_SNP [dm6]	C	T	2.767e^-4	0.877	INTRON Mhc
3R	15879188	3R_15879188_SNP [dm3] 3R_20053466_SNP [dm6]	C	T	2.770e^-4	0.877	INTRON CG17193	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	2107963	3L_2107963_SNP [dm3] 3L_2107963_SNP [dm6]	C	G	2.779e^-4	0.877	INTRON sls	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	10422655	3L_10422655_SNP [dm3] 3L_10429555_SNP [dm6]	C	A	2.779e^-4	0.877	DOWNSTREAM Ir67b INTERGENIC
2L	11328997	2L_11328997_SNP [dm3] 2L_11328997_SNP [dm6]	C	A	2.780e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	6687756	3L_6687756_SNP [dm3] 3L_6694656_SNP [dm6]	G	T	2.782e^-4	0.877	INTRON SP1173
X	1043573	X_1043573_SNP [dm3] X_1149540_SNP [dm6]	T	C	2.788e^-4	0.877	INTERGENIC
2L	13695767	2L_13695767_SNP [dm3] 2L_13695767_SNP [dm6]	G	A	2.794e^-4	0.877	INTRON CG31814
2R	15506006	2R_15506006_SNP [dm3] 2R_19618501_SNP [dm6]	A	T	2.801e^-4	0.877	INTRON sm
3L	18443069	3L_18443069_SNP [dm3] 3L_18449969_SNP [dm6]	T	A	2.802e^-4	0.877	INTERGENIC
3R	20113119	3R_20113119_SNP [dm3] 3R_24287397_SNP [dm6]	A	G	2.809e^-4	0.877	INTRON CG6356
3L	1850579	3L_1850579_SNP [dm3] 3L_1850579_SNP [dm6]	A	G	2.820e^-4	0.877	DOWNSTREAM CG13936 INTERGENIC
2L	19383087	2L_19383087_SNP [dm3] 2L_19383087_SNP [dm6]	G	A	2.827e^-4	0.877	UTR_3_PRIME CG17350 DOWNSTREAM fon	TF binding site mE1_TFBS_cad
3R	25730199	3R_25730199_SNP [dm3] 3R_29904477_SNP [dm6]	T	A	2.828e^-4	0.877	UPSTREAM CG15517 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2R	14457864	2R_14457864_SNP [dm3] 2R_18570359_SNP [dm6]	T	A	2.830e^-4	0.877	INTRON GEFmeso
3L	11407831	3L_11407831_SNP [dm3] 3L_11414731_SNP [dm6]	T	G	2.838e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10605069	2L_10605069_DEL [dm3] 2L_10605069_DEL [dm6]	AG	A	2.843e^-4	0.877	INTRON Trim9	TF binding site BDTNP1_TFBS_twi
3R	7283604	3R_7283604_SNP [dm3] 3R_11457882_SNP [dm6]	A	G	2.854e^-4	0.877	UTR_5_PRIME PGRP-LB INTRON CG17230 & 1 other
2R	12854050	2R_12854050_SNP [dm3] 2R_16966545_SNP [dm6]	T	C	2.855e^-4	0.877	INTERGENIC
3R	3297953	3R_3297953_SNP [dm3] 3R_7472231_SNP [dm6]	T	C	2.856e^-4	0.877	UPSTREAM tRNA:V3b:84Dc DOWNSTREAM CG1142 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19672924	3R_19672924_SNP [dm3] 3R_23847202_SNP [dm6]	A	G	2.868e^-4	0.877	INTRON CG34355	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	855244	3L_855244_SNP [dm3] 3L_855244_SNP [dm6]	G	A	2.872e^-4	0.877	INTRON dpr20
2R	15469553	2R_15469553_SNP [dm3] 2R_19582048_SNP [dm6]	C	T	2.876e^-4	0.877	INTRON sm
X	6785177	X_6785177_SNP [dm3] X_6891144_SNP [dm6]	G	A	2.878e^-4	0.877	INTERGENIC
2R	1593581	2R_1593581_SNP [dm3] 2R_5706076_SNP [dm6]	T	C	2.879e^-4	0.877	DOWNSTREAM ap & 1 other INTERGENIC
2L	12194391	2L_12194391_SNP [dm3] 2L_12194391_SNP [dm6]	G	T	2.884e^-4	0.877	INTRON aret
2R	9127856	2R_9127856_SNP [dm3] 2R_13240351_SNP [dm6]	A	C	2.897e^-4	0.877	NON_SYNONYMOUS_CODING GstE14 UPSTREAM CG4679	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14457872	2R_14457872_SNP [dm3] 2R_18570367_SNP [dm6]	C	G	2.906e^-4	0.877	INTRON GEFmeso
3R	26095321	3R_26095321_INS [dm3] 3R_30269599_INS [dm6]	A	AT	2.909e^-4	0.877	INTERGENIC
3L	18443028	3L_18443028_SNP [dm3] 3L_18449928_SNP [dm6]	C	G	2.911e^-4	0.877	INTERGENIC
3R	12457693	3R_12457693_SNP [dm3] 3R_16631971_SNP [dm6]	C	T	2.912e^-4	0.877	SYNONYMOUS_CODING Fas1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2720706	3L_2720706_SNP [dm3] 3L_2720706_SNP [dm6]	G	A	2.914e^-4	0.877	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11562102	2L_11562102_INS [dm3] 2L_11562102_INS [dm6]	A	AAT	2.923e^-4	0.877	DOWNSTREAM CR44495 INTERGENIC
3R	27017636	3R_27017636_SNP [dm3] 3R_31191914_SNP [dm6]	G	C	2.932e^-4	0.877	INTRON mesh	TF binding site BDTNP1_TFBS_hb
3R	3362615	3R_3362615_SNP [dm3] 3R_7536893_SNP [dm6]	C	T	2.934e^-4	0.877	SYNONYMOUS_CODING alpha-Est4 UPSTREAM alpha-Est5
3R	20127462	3R_20127462_SNP [dm3] 3R_24301740_SNP [dm6]	G	A	2.942e^-4	0.877	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	3218622	3R_3218622_SNP [dm3] 3R_7392900_SNP [dm6]	G	C	2.947e^-4	0.877	DOWNSTREAM CG42650 INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	9436962	X_9436962_SNP [dm3] X_9542929_SNP [dm6]	A	G	2.948e^-4	0.877	INTRON CG32700
2L	11945378	2L_11945378_SNP [dm3] 2L_11945378_SNP [dm6]	T	C	2.951e^-4	0.877	SYNONYMOUS_CODING Cry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27016214	3R_27016214_SNP [dm3] 3R_31190492_SNP [dm6]	A	T	2.953e^-4	0.877	INTRON mesh
2L	15160870	2L_15160870_SNP [dm3] 2L_15160870_SNP [dm6]	C	T	2.963e^-4	0.877	UPSTREAM CR44771 EXON CR44770
3L	13797681	3L_13797681_SNP [dm3] 3L_13804581_SNP [dm6]	T	A	2.969e^-4	0.877	INTERGENIC
2R	3895574	2R_3895574_SNP [dm3] 2R_8008069_SNP [dm6]	C	T	2.975e^-4	0.877	NON_SYNONYMOUS_CODING Odc2	TF binding site mE1_TFBS_cad
2R	9398384	2R_9398384_SNP [dm3] 2R_13510879_SNP [dm6]	G	C	2.976e^-4	0.877	SYNONYMOUS_CODING mip120	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	3218970	3R_3218970_SNP [dm3] 3R_7393248_SNP [dm6]	A	T	2.977e^-4	0.877	DOWNSTREAM CG42650 INTERGENIC
3L	10285972	3L_10285972_SNP [dm3] 3L_10292872_SNP [dm6]	T	C	2.982e^-4	0.877	INTERGENIC
3L	12429995	3L_12429995_SNP [dm3] 3L_12436895_SNP [dm6]	T	A	2.987e^-4	0.877	INTERGENIC
3R	12470635	3R_12470635_INS [dm3] 3R_16644913_INS [dm6]	A	AGTATTCTC	2.995e^-4	0.877	UTR_3_PRIME CG10326 DOWNSTREAM CG10324
3R	14130041	3R_14130041_SNP [dm3] 3R_18304319_SNP [dm6]	A	G	2.995e^-4	0.877	SYNONYMOUS_CODING PKD	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18447034	3L_18447034_SNP [dm3] 3L_18453934_SNP [dm6]	C	T	2.996e^-4	0.877	INTERGENIC
3L	12462067	3L_12462067_SNP [dm3] 3L_12468967_SNP [dm6]	T	C	3.004e^-4	0.877	UPSTREAM eyg DOWNSTREAM CG32102 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
2L	14270848	2L_14270848_SNP [dm3] 2L_14270848_SNP [dm6]	G	C	3.006e^-4	0.877	INTRON wb
3L	2100608	3L_2100608_SNP [dm3] 3L_2100608_SNP [dm6]	G	A	3.008e^-4	0.877	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	19447630	3L_19447630_SNP [dm3] 3L_19454530_SNP [dm6]	T	C	3.014e^-4	0.877	UPSTREAM CR45434 INTERGENIC	TF binding site mE1_TFBS_inv
X	2367202	X_2367202_SNP [dm3] X_2473169_SNP [dm6]	A	T	3.030e^-4	0.877	SPLICE_SITE_REGION trol INTRON trol	TF binding site mE1_TFBS_HSA
3L	13480612	3L_13480612_SNP [dm3] 3L_13487512_SNP [dm6]	C	T	3.033e^-4	0.877	INTRON Tgi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	26668057	3R_26668057_SNP [dm3] 3R_30842335_SNP [dm6]	A	G	3.041e^-4	0.877	DOWNSTREAM CG15544 INTERGENIC	TF binding site mE1_TFBS_cad
2L	16800595	2L_16800595_SNP [dm3] 2L_16800595_SNP [dm6]	T	G	3.044e^-4	0.877	INTRON Ugt36Bc	TF binding site mE1_TFBS_cad
3L	1388301	3L_1388301_DEL [dm3] 3L_1388301_DEL [dm6]	TG	A	3.045e^-4	0.877	DOWNSTREAM ru INTRON Ptp61F
2L	9871649	2L_9871649_SNP [dm3] 2L_9871649_SNP [dm6]	G	T	3.053e^-4	0.877	INTRON nAChRalpha6
X	14460466	X_14460466_SNP [dm3] X_14566433_SNP [dm6]	A	G	3.056e^-4	0.877	INTERGENIC
2L	8737806	2L_8737806_SNP [dm3] 2L_8737806_SNP [dm6]	T	C	3.061e^-4	0.877	INTRON raw
X	3626530	X_3626530_SNP [dm3] X_3732497_SNP [dm6]	C	A	3.063e^-4	0.877	INTRON tlk
X	12613749	X_12613749_SNP [dm3] X_12719716_SNP [dm6]	A	T	3.066e^-4	0.877	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8449604	2R_8449604_SNP [dm3] 2R_12562099_SNP [dm6]	G	T	3.071e^-4	0.877	UTR_5_PRIME CG30056 INTRON fra
2L	12593463	2L_12593463_SNP [dm3] 2L_12593463_SNP [dm6]	G	A	3.081e^-4	0.877	INTRON nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	1549970	3L_1549970_SNP [dm3] 3L_1549970_SNP [dm6]	T	C	3.083e^-4	0.877	INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12272927	3R_12272927_SNP [dm3] 3R_16447205_SNP [dm6]	A	G	3.093e^-4	0.877	INTRON Pak3
3R	16064808	3R_16064808_SNP [dm3] 3R_20239086_SNP [dm6]	A	G	3.100e^-4	0.877	INTRON Nlg4
3R	20199400	3R_20199400_SNP [dm3] 3R_24373678_SNP [dm6]	G	T	3.107e^-4	0.877	NON_SYNONYMOUS_CODING CG17781 UPSTREAM CG17782
3R	12728912	3R_12728912_DEL [dm3] 3R_16903190_DEL [dm6]	TT	T	3.121e^-4	0.877	INTRON iab-8
2R	16496166	2R_16496166_SNP [dm3] 2R_20608661_SNP [dm6]	A	G	3.122e^-4	0.877	INTRON Hil	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6480448	X_6480448_SNP [dm3] X_6586415_SNP [dm6]	A	T	3.127e^-4	0.877	DOWNSTREAM CG34417 INTRON CG34417
2L	1320902	2L_1320902_SNP [dm3] 2L_1320902_SNP [dm6]	T	A	3.138e^-4	0.877	INTERGENIC
3R	16642638	3R_16642638_SNP [dm3] 3R_20816916_SNP [dm6]	C	T	3.141e^-4	0.877	UTR_3_PRIME CG17270 UPSTREAM Fancd2
3L	9976916	3L_9976916_SNP [dm3] 3L_9983816_SNP [dm6]	T	G	3.151e^-4	0.877	INTRON dpr6
2L	9409888	2L_9409888_SNP [dm3] 2L_9409888_SNP [dm6]	T	C	3.151e^-4	0.877	INTRON Shawl
X	15832509	X_15832509_INS [dm3] X_15938476_INS [dm6]	A	ATCT	3.153e^-4	0.877	INTRON Stim
X	16599910	X_16599910_SNP [dm3] X_16705877_SNP [dm6]	T	C	3.155e^-4	0.877	DOWNSTREAM CG9672 & 1 other INTRON CG4678
2R	18113477	2R_18113477_SNP [dm3] 2R_22225972_SNP [dm6]	C	G	3.158e^-4	0.877	SYNONYMOUS_CODING Oatp58Dc
X	14464112	X_14464112_SNP [dm3] X_14570079_SNP [dm6]	G	T	3.160e^-4	0.877	INTERGENIC
3L	1388296	3L_1388296_SNP [dm3] 3L_1388296_SNP [dm6]	C	T	3.161e^-4	0.877	DOWNSTREAM ru INTRON Ptp61F
2R	19901018	2R_19901018_SNP [dm3] 2R_24013495_SNP [dm6]	C	A	3.161e^-4	0.877	INTRON Unc-89
3R	14763196	3R_14763196_SNP [dm3] 3R_18937474_SNP [dm6]	A	T	3.162e^-4	0.877	INTRON CG42613
2L	3739740	2L_3739740_SNP [dm3] 2L_3739740_SNP [dm6]	G	A	3.166e^-4	0.877	INTRON CG10019
3R	20202055	3R_20202055_SNP [dm3] 3R_24376333_SNP [dm6]	A	C	3.168e^-4	0.877	UPSTREAM CG17781 & 1 other INTERGENIC
3R	21459767	3R_21459767_DEL [dm3] 3R_25634045_DEL [dm6]	ATGAT	TA	3.176e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2R	16152482	2R_16152482_SNP [dm3] 2R_20264977_SNP [dm6]	C	T	3.177e^-4	0.877	SYNONYMOUS_CODING CG8908 DOWNSTREAM RpS18 EXON CR43812	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15422037	2L_15422037_SNP [dm3] 2L_15422037_SNP [dm6]	C	T	3.182e^-4	0.877	INTERGENIC
2R	14458022	2R_14458022_MNP [dm3] 2R_18570517_MNP [dm6]	GTA	TAC	3.187e^-4	0.877	INTRON GEFmeso
2L	11562096	2L_11562096_SNP [dm3] 2L_11562096_SNP [dm6]	T	G	3.193e^-4	0.877	DOWNSTREAM CR44495 INTERGENIC
X	6469945	X_6469945_SNP [dm3] X_6575912_SNP [dm6]	G	A	3.193e^-4	0.877	INTRON CG34417
2R	15459738	2R_15459738_DEL [dm3] 2R_19572233_DEL [dm6]	GATATTTATTGAATAAATTA...	G	3.209e^-4	0.877	INTRON sm	TF binding site mE1_TFBS_HSA
2R	14457903	2R_14457903_SNP [dm3] 2R_18570398_SNP [dm6]	C	T	3.217e^-4	0.877	INTRON GEFmeso
2R	1231087	2R_1231087_SNP [dm3] 2R_5343582_SNP [dm6]	G	C	3.222e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA transposable element FlyBase
2R	14457861	2R_14457861_SNP [dm3] 2R_18570356_SNP [dm6]	C	T	3.223e^-4	0.877	INTRON GEFmeso
2R	12576818	2R_12576818_SNP [dm3] 2R_16689313_SNP [dm6]	A	T	3.225e^-4	0.877	INTRON CG30463
X	6252952	X_6252952_SNP [dm3] X_6358919_SNP [dm6]	A	T	3.226e^-4	0.877	SYNONYMOUS_CODING kdn	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21966421	3R_21966421_SNP [dm3] 3R_26140699_SNP [dm6]	A	G	3.229e^-4	0.877	INTERGENIC
3L	5605796	3L_5605796_SNP [dm3] 3L_5612696_SNP [dm6]	G	A	3.230e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13154234	2R_13154234_SNP [dm3] 2R_17266729_SNP [dm6]	T	C	3.235e^-4	0.877	INTRON mbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	9019893	3R_9019893_SNP [dm3] 3R_13194171_SNP [dm6]	T	A	3.239e^-4	0.877	INTERGENIC
2L	9783739	2L_9783739_SNP [dm3] 2L_9783739_SNP [dm6]	C	T	3.240e^-4	0.877	INTRON IP3K1	TF binding site mE1_TFBS_sens
X	5443166	X_5443166_SNP [dm3] X_5549133_SNP [dm6]	T	C	3.243e^-4	0.877	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19297612	2R_19297612_SNP [dm3] 2R_23410089_SNP [dm6]	C	G	3.259e^-4	0.877	INTERGENIC
3R	27018329	3R_27018329_SNP [dm3] 3R_31192607_SNP [dm6]	A	T	3.271e^-4	0.877	UPSTREAM bnk INTRON mesh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16456457	2R_16456457_SNP [dm3] 2R_20568952_SNP [dm6]	C	T	3.275e^-4	0.877	INTRON qsm
X	14460470	X_14460470_SNP [dm3] X_14566437_SNP [dm6]	T	G	3.279e^-4	0.877	INTERGENIC
2L	12949956	2L_12949956_SNP [dm3] 2L_12949956_SNP [dm6]	G	A	3.284e^-4	0.877	INTERGENIC
3L	13479168	3L_13479168_SNP [dm3] 3L_13486068_SNP [dm6]	T	C	3.298e^-4	0.877	UTR_5_PRIME Abp1 UPSTREAM Tgi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	7416558	2L_7416558_SNP [dm3] 2L_7416558_SNP [dm6]	T	A	3.302e^-4	0.877	INTRON chm
2R	8449579	2R_8449579_SNP [dm3] 2R_12562074_SNP [dm6]	G	T	3.306e^-4	0.877	UTR_5_PRIME CG30056 INTRON fra
3R	9019207	3R_9019207_SNP [dm3] 3R_13193485_SNP [dm6]	A	G	3.306e^-4	0.877	DOWNSTREAM CG8141 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9019241	3R_9019241_SNP [dm3] 3R_13193519_SNP [dm6]	A	G	3.306e^-4	0.877	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10432827	2R_10432827_SNP [dm3] 2R_14545322_SNP [dm6]	A	G	3.307e^-4	0.877	SYNONYMOUS_CODING CG30076 INTRON ttv	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10494420	2L_10494420_SNP [dm3] 2L_10494420_SNP [dm6]	C	A	3.311e^-4	0.877	SPLICE_SITE_REGION Myo31DF INTRON Myo31DF	TF binding site mE1_TFBS_sens
3L	12804350	3L_12804350_SNP [dm3] 3L_12811250_SNP [dm6]	G	A	3.313e^-4	0.877	NON_SYNONYMOUS_CODING Sap130	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19952380	3R_19952380_SNP [dm3] 3R_24126658_SNP [dm6]	A	G	3.321e^-4	0.877	NON_SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11340059	2R_11340059_SNP [dm3] 2R_15452554_SNP [dm6]	T	C	3.324e^-4	0.877	INTRON CG43729
3R	13120346	3R_13120346_SNP [dm3] 3R_17294624_SNP [dm6]	G	A	3.332e^-4	0.877	INTERGENIC
2R	7000820	2R_7000820_SNP [dm3] 2R_11113315_SNP [dm6]	T	G	3.347e^-4	0.877	INTRON luna
2L	21096623	2L_21096623_SNP [dm3] 2L_21096623_SNP [dm6]	A	C	3.349e^-4	0.877	UPSTREAM CG34136 INTRON CG12050	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19323196	2R_19323196_DEL [dm3] 2R_23435673_DEL [dm6]	CATATC	C	3.349e^-4	0.877	INTERGENIC
2R	19323204	2R_19323204_SNP [dm3] 2R_23435681_SNP [dm6]	C	T	3.349e^-4	0.877	INTERGENIC
2R	19323209	2R_19323209_SNP [dm3] 2R_23435686_SNP [dm6]	T	A	3.349e^-4	0.877	INTERGENIC
2R	14457869	2R_14457869_SNP [dm3] 2R_18570364_SNP [dm6]	G	A	3.355e^-4	0.877	INTRON GEFmeso
2R	14457876	2R_14457876_SNP [dm3] 2R_18570371_SNP [dm6]	T	A	3.362e^-4	0.877	INTRON GEFmeso
2L	16800591	2L_16800591_SNP [dm3] 2L_16800591_SNP [dm6]	G	A	3.378e^-4	0.877	INTRON Ugt36Bc	TF binding site mE1_TFBS_cad
X	2365996	X_2365996_SNP [dm3] X_2471963_SNP [dm6]	A	C	3.384e^-4	0.877	INTRON trol
X	15888744	X_15888744_SNP [dm3] X_15994711_SNP [dm6]	C	T	3.391e^-4	0.877	SYNONYMOUS_CODING exd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11769534	2R_11769534_SNP [dm3] 2R_15882029_SNP [dm6]	T	G	3.400e^-4	0.877	INTRON sli
3L	9989379	3L_9989379_SNP [dm3] 3L_9996279_SNP [dm6]	G	A	3.410e^-4	0.877	INTRON dpr6
2L	7253430	2L_7253430_SNP [dm3] 2L_7253430_SNP [dm6]	T	C	3.412e^-4	0.877	UPSTREAM CG13786 INTERGENIC
2R	14457866	2R_14457866_SNP [dm3] 2R_18570361_SNP [dm6]	G	A	3.420e^-4	0.877	INTRON GEFmeso
3L	1837217	3L_1837217_SNP [dm3] 3L_1837217_SNP [dm6]	A	G	3.420e^-4	0.877	INTERGENIC
X	4216378	X_4216378_SNP [dm3] X_4322345_SNP [dm6]	T	G	3.422e^-4	0.877	UPSTREAM norpA & 1 other DOWNSTREAM CG2982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9378776	2L_9378776_SNP [dm3] 2L_9378776_SNP [dm6]	T	A	3.429e^-4	0.877	INTRON Shawl
2R	14457920	2R_14457920_SNP [dm3] 2R_18570415_SNP [dm6]	A	T	3.435e^-4	0.877	INTRON GEFmeso
X	15455469	X_15455469_DEL [dm3] X_15561436_DEL [dm6]	GCGGTTGG	G	3.441e^-4	0.877	INTERGENIC
2R	15543589	2R_15543589_SNP [dm3] 2R_19656084_SNP [dm6]	C	T	3.442e^-4	0.877	DOWNSTREAM CR44214 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3050753	3L_3050753_SNP [dm3] 3L_3050753_SNP [dm6]	C	T	3.453e^-4	0.877	DOWNSTREAM Sk2 INTRON CG32485	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	2821095	X_2821095_SNP [dm3] X_2927062_SNP [dm6]	A	G	3.455e^-4	0.877	INTRON kirre & 1 other
2R	14457906	2R_14457906_INS [dm3] 2R_18570401_INS [dm6]	A	ATTGG	3.462e^-4	0.877	INTRON GEFmeso
2R	18113416	2R_18113416_SNP [dm3] 2R_22225911_SNP [dm6]	C	T	3.463e^-4	0.877	SPLICE_SITE_REGION Oatp58Dc INTRON Oatp58Dc
3L	18375401	3L_18375401_SNP [dm3] 3L_18382301_SNP [dm6]	G	T	3.465e^-4	0.877	INTERGENIC
3L	1024748	3L_1024748_SNP [dm3] 3L_1024748_SNP [dm6]	A	G	3.466e^-4	0.877	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7923089	2L_7923089_SNP [dm3] 2L_7923089_SNP [dm6]	T	C	3.468e^-4	0.877	INTRON Snoo
2R	11769485	2R_11769485_SNP [dm3] 2R_15881980_SNP [dm6]	A	G	3.470e^-4	0.877	INTRON sli
2L	8118325	2L_8118325_SNP [dm3] 2L_8118325_SNP [dm6]	C	T	3.472e^-4	0.877	SYNONYMOUS_CODING mon2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16428928	2L_16428928_SNP [dm3] 2L_16428928_SNP [dm6]	A	G	3.475e^-4	0.877	INTRON CG5888	TF binding site mE1_TFBS_HSA
2R	9368277	2R_9368277_SNP [dm3] 2R_13480772_SNP [dm6]	T	C	3.492e^-4	0.877	INTRON arr
2R	6542807	2R_6542807_SNP [dm3] 2R_10655302_SNP [dm6]	A	T	3.496e^-4	0.877	INTERGENIC
3R	12199763	3R_12199763_SNP [dm3] 3R_16374041_SNP [dm6]	C	T	3.512e^-4	0.877	DOWNSTREAM ss INTERGENIC
3R	12199767	3R_12199767_SNP [dm3] 3R_16374045_SNP [dm6]	T	A	3.512e^-4	0.877	DOWNSTREAM ss INTERGENIC
2L	17403667	2L_17403667_SNP [dm3] 2L_17403667_SNP [dm6]	G	T	3.516e^-4	0.877	INTRON CLIP-190
3L	13935065	3L_13935065_SNP [dm3] 3L_13941965_SNP [dm6]	A	T	3.531e^-4	0.877	INTRON CG32137	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	18113411	2R_18113411_SNP [dm3] 2R_22225906_SNP [dm6]	C	G	3.536e^-4	0.877	SPLICE_SITE_REGION Oatp58Dc INTRON Oatp58Dc
X	20466794	X_20466794_SNP [dm3] X_20595767_SNP [dm6]	A	G	3.556e^-4	0.877	INTRON RunxA
2R	14457879	2R_14457879_SNP [dm3] 2R_18570374_SNP [dm6]	A	T	3.558e^-4	0.877	INTRON GEFmeso
3R	25349864	3R_25349864_SNP [dm3] 3R_29524142_SNP [dm6]	A	T	3.573e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7289299	3R_7289299_SNP [dm3] 3R_11463577_SNP [dm6]	A	G	3.574e^-4	0.877	UPSTREAM CG17230 INTRON CG17230
2L	7923109	2L_7923109_SNP [dm3] 2L_7923109_SNP [dm6]	C	T	3.582e^-4	0.877	INTRON Snoo
3L	5140526	3L_5140526_SNP [dm3] 3L_5147426_SNP [dm6]	C	A	3.585e^-4	0.877	INTRON Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	9138648	3R_9138648_SNP [dm3] 3R_13312926_SNP [dm6]	C	T	3.585e^-4	0.877	NON_SYNONYMOUS_CODING CG44142 DOWNSTREAM CG32473
3L	11385096	3L_11385096_SNP [dm3] 3L_11391996_SNP [dm6]	G	A	3.596e^-4	0.877	INTERGENIC
3L	424405	3L_424405_SNP [dm3] 3L_424405_SNP [dm6]	G	T	3.607e^-4	0.877	INTERGENIC
X	18693275	X_18693275_SNP [dm3] X_18799242_SNP [dm6]	A	T	3.608e^-4	0.877	INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4872486	2L_4872486_SNP [dm3] 2L_4872486_SNP [dm6]	T	C	3.610e^-4	0.877	INTRON pog	TF binding site mE1_TFBS_cad
2L	19781924	2L_19781924_SNP [dm3] 2L_19781924_SNP [dm6]	G	A	3.612e^-4	0.877	SYNONYMOUS_CODING CdGAPr	TF binding site mE1_TFBS_cad
3L	8666790	3L_8666790_SNP [dm3] 3L_8673690_SNP [dm6]	C	T	3.615e^-4	0.877	INTERGENIC	regulatory region REDfly_CRMs
2R	14367881	2R_14367881_SNP [dm3] 2R_18480376_SNP [dm6]	G	T	3.620e^-4	0.877	INTRON CG30116
3L	5589234	3L_5589234_SNP [dm3] 3L_5596134_SNP [dm6]	A	G	3.624e^-4	0.877	SYNONYMOUS_CODING CG5150 UPSTREAM CG10592	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14557037	2L_14557037_SNP [dm3] 2L_14557037_SNP [dm6]	C	A	3.638e^-4	0.877	DOWNSTREAM CR44854 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	9931311	X_9931311_SNP [dm3] X_10037278_SNP [dm6]	C	G	3.639e^-4	0.877	SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_inv
X	2942739	X_2942739_SNP [dm3] X_3048706_SNP [dm6]	G	C	3.654e^-4	0.877	INTRON kirre
3L	12121239	3L_12121239_SNP [dm3] 3L_12128139_SNP [dm6]	C	T	3.667e^-4	0.877	UPSTREAM Ir68b INTRON CG34241
2L	4442453	2L_4442453_SNP [dm3] 2L_4442453_SNP [dm6]	G	A	3.668e^-4	0.877	UTR_5_PRIME CG15432 UPSTREAM Sfp24F DOWNSTREAM morgue INTRON CG15432	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	8667624	3L_8667624_SNP [dm3] 3L_8674524_SNP [dm6]	G	T	3.682e^-4	0.877	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	2618930	2L_2618930_SNP [dm3] 2L_2618930_SNP [dm6]	T	A	3.682e^-4	0.877	INTERGENIC
2R	9450588	2R_9450588_SNP [dm3] 2R_13563083_SNP [dm6]	G	A	3.693e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16152511	2R_16152511_SNP [dm3] 2R_20265006_SNP [dm6]	C	G	3.703e^-4	0.877	SYNONYMOUS_CODING CG8908 DOWNSTREAM RpS18 EXON CR43812	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8165240	2R_8165240_SNP [dm3] 2R_12277735_SNP [dm6]	A	T	3.716e^-4	0.877	UTR_3_PRIME Cam
3L	13304400	3L_13304400_SNP [dm3] 3L_13311300_SNP [dm6]	C	T	3.719e^-4	0.877	INTERGENIC
2R	15508482	2R_15508482_SNP [dm3] 2R_19620977_SNP [dm6]	T	C	3.726e^-4	0.877	INTRON sm
2R	13418242	2R_13418242_SNP [dm3] 2R_17530737_SNP [dm6]	G	T	3.727e^-4	0.877	INTRON Patronin	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	9409742	2L_9409742_SNP [dm3] 2L_9409742_SNP [dm6]	G	C	3.731e^-4	0.877	INTRON Shawl
3R	26668172	3R_26668172_SNP [dm3] 3R_30842450_SNP [dm6]	C	T	3.737e^-4	0.877	DOWNSTREAM CG15544 INTERGENIC	TF binding site mE1_TFBS_cad
X	12140565	X_12140565_SNP [dm3] X_12246532_SNP [dm6]	T	A	3.743e^-4	0.877	INTRON Ten-a
3R	7867702	3R_7867702_SNP [dm3] 3R_12041980_SNP [dm6]	A	C	3.743e^-4	0.877	NON_SYNONYMOUS_CODING CG14736 INTRON CG14736
3R	13166803	3R_13166803_SNP [dm3] 3R_17341081_SNP [dm6]	T	C	3.755e^-4	0.877	INTRON beat-IIa
3L	2836965	3L_2836965_SNP [dm3] 3L_2836965_SNP [dm6]	A	C	3.758e^-4	0.877	INTRON CG43444
3L	7266950	3L_7266950_SNP [dm3] 3L_7273850_SNP [dm6]	T	G	3.761e^-4	0.877	INTRON unc-13-4A
X	3643521	X_3643521_DEL [dm3] X_3749488_DEL [dm6]	AA	A	3.763e^-4	0.877	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16957164	2R_16957164_SNP [dm3] 2R_21069659_SNP [dm6]	A	T	3.764e^-4	0.877	UPSTREAM Cht9 DOWNSTREAM CG10527 & 1 other INTERGENIC
3R	20127273	3R_20127273_SNP [dm3] 3R_24301551_SNP [dm6]	C	G	3.768e^-4	0.877	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	9441032	X_9441032_SNP [dm3] X_9546999_SNP [dm6]	C	T	3.768e^-4	0.877	INTRON CG32700
3L	10243200	3L_10243200_SNP [dm3] 3L_10250100_SNP [dm6]	C	T	3.771e^-4	0.877	INTERGENIC
3R	8999285	3R_8999285_SNP [dm3] 3R_13173563_SNP [dm6]	G	T	3.772e^-4	0.877	INTERGENIC
2R	13050256	2R_13050256_SNP [dm3] 2R_17162751_SNP [dm6]	A	T	3.774e^-4	0.877	INTERGENIC
2L	10280532	2L_10280532_SNP [dm3] 2L_10280532_SNP [dm6]	G	T	3.777e^-4	0.877	NON_SYNONYMOUS_CODING CG34043
2L	5676774	2L_5676774_SNP [dm3] 2L_5676774_SNP [dm6]	G	A	3.779e^-4	0.877	INTERGENIC
2R	5108960	2R_5108960_SNP [dm3] 2R_9221455_SNP [dm6]	T	C	3.787e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10170064	2R_10170064_SNP [dm3] 2R_14282559_SNP [dm6]	G	T	3.787e^-4	0.877	INTRON Ih
3L	6099503	3L_6099503_SNP [dm3] 3L_6106403_SNP [dm6]	C	T	3.788e^-4	0.877	INTRON Ets65A	TF binding site mE1_TFBS_cad
2L	6425882	2L_6425882_SNP [dm3] 2L_6425882_SNP [dm6]	T	C	3.788e^-4	0.877	SYNONYMOUS_CODING Fic DOWNSTREAM CG9527	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	2487474	X_2487474_INS [dm3] X_2593441_INS [dm6]	C	CA	3.791e^-4	0.877	UPSTREAM egh INTRON egh
3R	21399961	3R_21399961_SNP [dm3] 3R_25574239_SNP [dm6]	G	C	3.793e^-4	0.877	INTRON msi
2L	10646121	2L_10646121_DEL [dm3] 2L_10646121_DEL [dm6]	CTCCCT	GAA	3.799e^-4	0.877	UPSTREAM CG17097 DOWNSTREAM CG18284 INTERGENIC
2L	4458474	2L_4458474_SNP [dm3] 2L_4458474_SNP [dm6]	A	T	3.806e^-4	0.877	UPSTREAM snoRNA:Me18S-C1831 & 1 other DOWNSTREAM mRpL27 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25018683	3R_25018683_SNP [dm3] 3R_29192961_SNP [dm6]	C	T	3.815e^-4	0.877	INTRON CG14509
3L	11384369	3L_11384369_SNP [dm3] 3L_11391269_SNP [dm6]	C	T	3.817e^-4	0.877	INTERGENIC
3R	24831202	3R_24831202_SNP [dm3] 3R_29005480_SNP [dm6]	A	G	3.828e^-4	0.877	INTRON wat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20335715	3R_20335715_DEL [dm3] 3R_24509993_DEL [dm6]	AA	A	3.853e^-4	0.877	INTRON nAChRbeta2
3R	7867703	3R_7867703_SNP [dm3] 3R_12041981_SNP [dm6]	T	A	3.863e^-4	0.877	NON_SYNONYMOUS_CODING CG14736 INTRON CG14736
3R	24831201	3R_24831201_SNP [dm3] 3R_29005479_SNP [dm6]	G	T	3.866e^-4	0.877	INTRON wat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9193296	X_9193296_DEL [dm3] X_9299263_DEL [dm6]	TT	T	3.866e^-4	0.877	INTRON lz
2R	3800278	2R_3800278_SNP [dm3] 2R_7912773_SNP [dm6]	A	T	3.872e^-4	0.877	INTRON CG30377
3R	13166489	3R_13166489_SNP [dm3] 3R_17340767_SNP [dm6]	C	T	3.872e^-4	0.877	INTRON beat-IIa
3R	22427874	3R_22427874_SNP [dm3] 3R_26602152_SNP [dm6]	C	T	3.873e^-4	0.877	SYNONYMOUS_CODING scrib INTRON scrib	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	855240	3L_855240_SNP [dm3] 3L_855240_SNP [dm6]	C	A	3.873e^-4	0.877	INTRON dpr20
2L	10711917	2L_10711917_SNP [dm3] 2L_10711917_SNP [dm6]	C	T	3.875e^-4	0.877	INTERGENIC
X	19995007	X_19995007_SNP [dm3] X_20100974_SNP [dm6]	C	T	3.892e^-4	0.877	INTERGENIC	transposable element FlyBase
X	10891189	X_10891189_SNP [dm3] X_10997156_SNP [dm6]	G	T	3.893e^-4	0.877	INTRON CG42339
3L	9549447	3L_9549447_SNP [dm3] 3L_9556347_SNP [dm6]	T	A	3.913e^-4	0.877	INTRON CG42673
2L	16541583	2L_16541583_SNP [dm3] 2L_16541583_SNP [dm6]	A	C	3.923e^-4	0.877	UPSTREAM CG31816 INTERGENIC
3R	10879190	3R_10879190_SNP [dm3] 3R_15053468_SNP [dm6]	A	G	3.926e^-4	0.877	INTERGENIC
X	11237150	X_11237150_INS [dm3] X_11343117_INS [dm6]	T	TT	3.928e^-4	0.877	INTRON CG34348
2R	8968091	2R_8968091_SNP [dm3] 2R_13080586_SNP [dm6]	C	T	3.933e^-4	0.877	INTERGENIC
3R	8431249	3R_8431249_SNP [dm3] 3R_12605527_SNP [dm6]	C	A	3.933e^-4	0.877	INTERGENIC
2R	19323159	2R_19323159_SNP [dm3] 2R_23435636_SNP [dm6]	T	A	3.935e^-4	0.877	INTERGENIC
2R	19323162	2R_19323162_SNP [dm3] 2R_23435639_SNP [dm6]	G	A	3.935e^-4	0.877	INTERGENIC
2R	19323173	2R_19323173_DEL [dm3] 2R_23435650_DEL [dm6]	AT	A	3.935e^-4	0.877	INTERGENIC
2R	19323179	2R_19323179_DEL [dm3] 2R_23435656_DEL [dm6]	AGATCCGTATATGA...	A	3.935e^-4	0.877	INTERGENIC
2R	19323213	2R_19323213_SNP [dm3] 2R_23435690_SNP [dm6]	A	T	3.935e^-4	0.877	INTERGENIC
2R	19323218	2R_19323218_SNP [dm3] 2R_23435695_SNP [dm6]	C	T	3.935e^-4	0.877	INTERGENIC
2R	9817000	2R_9817000_SNP [dm3] 2R_13929495_SNP [dm6]	A	T	3.935e^-4	0.877	INTRON shot
2R	9817022	2R_9817022_SNP [dm3] 2R_13929517_SNP [dm6]	A	C	3.935e^-4	0.877	INTRON shot
2L	11558206	2L_11558206_SNP [dm3] 2L_11558206_SNP [dm6]	A	G	3.936e^-4	0.877	INTERGENIC
2L	21934905	2L_21934905_DEL [dm3] 2L_21934905_DEL [dm6]	GG	G	3.942e^-4	0.877	INTERGENIC
3L	899725	3L_899725_SNP [dm3] 3L_899725_SNP [dm6]	C	T	3.944e^-4	0.877	DOWNSTREAM CG34057 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13460110	2R_13460110_SNP [dm3] 2R_17572605_SNP [dm6]	A	G	3.956e^-4	0.877	UPSTREAM CG42239 & 1 other DOWNSTREAM POSH INTRON CG14482	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	8679056	3L_8679056_SNP [dm3] 3L_8685956_SNP [dm6]	C	G	3.962e^-4	0.877	INTERGENIC
2R	14457943	2R_14457943_DEL [dm3] 2R_18570438_DEL [dm6]	TACAT	T	3.968e^-4	0.877	INTRON GEFmeso
3R	18266635	3R_18266635_SNP [dm3] 3R_22440913_SNP [dm6]	C	T	3.972e^-4	0.877	SYNONYMOUS_CODING CG12499	TF binding site mE1_TFBS_cad
3L	2794033	3L_2794033_SNP [dm3] 3L_2794033_SNP [dm6]	C	T	3.980e^-4	0.877	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14140658	3R_14140658_SNP [dm3] 3R_18314936_SNP [dm6]	A	T	3.981e^-4	0.877	UPSTREAM PKD INTERGENIC
3R	13166776	3R_13166776_SNP [dm3] 3R_17341054_SNP [dm6]	G	C	3.984e^-4	0.877	INTRON beat-IIa
3L	11384384	3L_11384384_SNP [dm3] 3L_11391284_SNP [dm6]	T	A	3.994e^-4	0.877	INTERGENIC
X	2487694	X_2487694_SNP [dm3] X_2593661_SNP [dm6]	A	C	3.995e^-4	0.877	START_GAINED egh UTR_5_PRIME egh INTRON egh
2R	14457941	2R_14457941_SNP [dm3] 2R_18570436_SNP [dm6]	C	T	3.997e^-4	0.877	INTRON GEFmeso
X	3658363	X_3658363_INS [dm3] X_3764330_INS [dm6]	A	AA	3.999e^-4	0.877	INTRON tlk	TF binding site BDTNP1_TFBS_dl
X	9915703	X_9915703_SNP [dm3] X_10021670_SNP [dm6]	G	T	3.999e^-4	0.877	INTRON Cht6
X	12084792	X_12084792_SNP [dm3] X_12190759_SNP [dm6]	G	A	4.011e^-4	0.877	INTRON Ten-a
3R	26110450	3R_26110450_SNP [dm3] 3R_30284728_SNP [dm6]	T	A	4.013e^-4	0.877	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	26110456	3R_26110456_SNP [dm3] 3R_30284734_SNP [dm6]	A	G	4.013e^-4	0.877	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	26110457	3R_26110457_SNP [dm3] 3R_30284735_SNP [dm6]	A	T	4.013e^-4	0.877	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	10131312	3R_10131312_SNP [dm3] 3R_14305590_SNP [dm6]	C	T	4.016e^-4	0.877	NON_SYNONYMOUS_CODING su_Hw_
3L	16339106	3L_16339106_SNP [dm3] 3L_16346006_SNP [dm6]	C	A	4.028e^-4	0.877	UPSTREAM CG33257 DOWNSTREAM CG4998 INTERGENIC
3L	13935058	3L_13935058_SNP [dm3] 3L_13941958_SNP [dm6]	C	A	4.029e^-4	0.877	INTRON CG32137	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	14844989	3R_14844989_SNP [dm3] 3R_19019267_SNP [dm6]	C	T	4.033e^-4	0.877	NON_SYNONYMOUS_CODING gukh INTRON gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15475153	2R_15475153_SNP [dm3] 2R_19587648_SNP [dm6]	C	T	4.038e^-4	0.877	UTR_3_PRIME CG42878 INTRON sm
3L	18438992	3L_18438992_SNP [dm3] 3L_18445892_SNP [dm6]	A	G	4.039e^-4	0.877	INTERGENIC
X	6468705	X_6468705_SNP [dm3] X_6574672_SNP [dm6]	T	A	4.040e^-4	0.877	INTRON CG34417
3R	3331490	3R_3331490_SNP [dm3] 3R_7505768_SNP [dm6]	C	A	4.041e^-4	0.877	UPSTREAM alpha-Est9 INTERGENIC
2L	11699931	2L_11699931_SNP [dm3] 2L_11699931_SNP [dm6]	T	G	4.076e^-4	0.877	INTERGENIC
2R	16014071	2R_16014071_INS [dm3] 2R_20126566_INS [dm6]	A	AA	4.079e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	23055311	3R_23055311_SNP [dm3] 3R_27229589_SNP [dm6]	A	G	4.086e^-4	0.877	UTR_3_PRIME CG31064 UPSTREAM CG42814	TF binding site mE1_TFBS_chinmo
3L	5520423	3L_5520423_SNP [dm3] 3L_5527323_SNP [dm6]	T	A	4.091e^-4	0.877	INTRON Lkr
3L	18980788	3L_18980788_SNP [dm3] 3L_18987688_SNP [dm6]	C	T	4.093e^-4	0.877	SYNONYMOUS_CODING CG11619
2L	3655746	2L_3655746_SNP [dm3] 2L_3655746_SNP [dm6]	A	G	4.095e^-4	0.877	INTRON for	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	11207839	2L_11207839_SNP [dm3] 2L_11207839_SNP [dm6]	A	T	4.096e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4820755	3L_4820755_SNP [dm3] 3L_4820755_SNP [dm6]	G	C	4.098e^-4	0.877	SYNONYMOUS_CODING Dhc64C
X	3461298	X_3461298_MNP [dm3] X_3567265_MNP [dm6]	CCTA	TTAG	4.104e^-4	0.877	INTRON CG32791 & 1 other
3R	18144060	3R_18144060_SNP [dm3] 3R_22318338_SNP [dm6]	T	G	4.108e^-4	0.877	SPLICE_SITE_REGION CG34377 INTRON CG34377	TF binding site mE1_TFBS_chinmo
3R	20091704	3R_20091704_SNP [dm3] 3R_24265982_SNP [dm6]	C	T	4.111e^-4	0.877	DOWNSTREAM tRNA:CR31130 INTRON jar
3R	13322783	3R_13322783_SNP [dm3] 3R_17497061_SNP [dm6]	T	G	4.112e^-4	0.877	INTRON Dscam3
3R	3297938	3R_3297938_SNP [dm3] 3R_7472216_SNP [dm6]	T	A	4.113e^-4	0.877	UPSTREAM tRNA:V3b:84Dc DOWNSTREAM CG1142 & 1 other INTERGENIC
2L	19754703	2L_19754703_SNP [dm3] 2L_19754703_SNP [dm6]	C	G	4.131e^-4	0.877	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17752845	3L_17752845_SNP [dm3] 3L_17759745_SNP [dm6]	G	A	4.134e^-4	0.877	UTR_5_PRIME CG32181 DOWNSTREAM CG32182 INTRON Adgf-A & 1 other
X	14761816	X_14761816_INS [dm3] X_14867783_INS [dm6]	A	AA	4.136e^-4	0.877	INTRON Flo2 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	11450230	3L_11450230_SNP [dm3] 3L_11457130_SNP [dm6]	G	A	4.144e^-4	0.877	UTR_3_PRIME CG12289
X	2607503	X_2607503_SNP [dm3] X_2713470_SNP [dm6]	T	C	4.145e^-4	0.877	UPSTREAM CG2694 INTRON CG2685	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5902780	X_5902780_SNP [dm3] X_6008747_SNP [dm6]	T	C	4.148e^-4	0.877	UTR_3_PRIME mab-21
3L	14373303	3L_14373303_SNP [dm3] 3L_14380203_SNP [dm6]	T	C	4.149e^-4	0.877	INTERGENIC
X	2385520	X_2385520_SNP [dm3] X_2491487_SNP [dm6]	G	A	4.150e^-4	0.877	SYNONYMOUS_CODING trol	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12232886	3R_12232886_SNP [dm3] 3R_16407164_SNP [dm6]	A	G	4.153e^-4	0.877	DOWNSTREAM CR45630 INTERGENIC
3L	855611	3L_855611_SNP [dm3] 3L_855611_SNP [dm6]	A	G	4.157e^-4	0.877	INTRON dpr20
2L	17416341	2L_17416341_SNP [dm3] 2L_17416341_SNP [dm6]	T	C	4.168e^-4	0.877	NON_SYNONYMOUS_CODING Dif INTRON Dif	TF binding site mE1_TFBS_inv
X	16753390	X_16753390_SNP [dm3] X_16859357_SNP [dm6]	T	A	4.170e^-4	0.877	INTRON CG13003
2R	14200389	2R_14200389_SNP [dm3] 2R_18312884_SNP [dm6]	G	T	4.173e^-4	0.877	DOWNSTREAM Tango8 INTRON sbb
X	3304006	X_3304006_SNP [dm3] X_3409973_SNP [dm6]	A	G	4.174e^-4	0.877	INTRON CR44999 & 1 other
2L	11145086	2L_11145086_SNP [dm3] 2L_11145086_SNP [dm6]	G	A	4.186e^-4	0.877	SYNONYMOUS_CODING CG31867 INTRON Gyc32E
3R	12471198	3R_12471198_SNP [dm3] 3R_16645476_SNP [dm6]	T	C	4.203e^-4	0.877	NON_SYNONYMOUS_CODING CG10324 DOWNSTREAM CG10326
2R	6021828	2R_6021828_SNP [dm3] 2R_10134323_SNP [dm6]	A	G	4.204e^-4	0.877	UPSTREAM gem INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	12225664	2L_12225664_SNP [dm3] 2L_12225664_SNP [dm6]	A	T	4.207e^-4	0.877	INTRON aret
2L	19382625	2L_19382625_SNP [dm3] 2L_19382625_SNP [dm6]	T	C	4.211e^-4	0.877	NON_SYNONYMOUS_CODING CG17350 DOWNSTREAM fon	TF binding site mE1_TFBS_cad
2L	10711904	2L_10711904_SNP [dm3] 2L_10711904_SNP [dm6]	T	G	4.214e^-4	0.877	INTERGENIC
X	20232017	X_20232017_SNP [dm3] X_20360990_SNP [dm6]	G	T	4.214e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2R	1222380	2R_1222380_SNP [dm3] 2R_5334875_SNP [dm6]	C	T	4.222e^-4	0.877	INTERGENIC	transposable element FlyBase
3R	3546300	3R_3546300_SNP [dm3] 3R_7720578_SNP [dm6]	A	C	4.223e^-4	0.877	INTRON CR44260
X	5538243	X_5538243_SNP [dm3] X_5644210_SNP [dm6]	A	G	4.229e^-4	0.877	INTRON CG42492
2R	4872174	2R_4872174_SNP [dm3] 2R_8984669_SNP [dm6]	G	A	4.231e^-4	0.877	INTRON CG8213	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	10507286	3L_10507286_SNP [dm3] 3L_10514186_SNP [dm6]	G	A	4.231e^-4	0.877	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9502906	3R_9502906_SNP [dm3] 3R_13677184_SNP [dm6]	A	G	4.237e^-4	0.877	SYNONYMOUS_CODING lkb1 UPSTREAM CG9588	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19135807	2R_19135807_SNP [dm3] 2R_23248284_SNP [dm6]	A	G	4.244e^-4	0.877	UPSTREAM RpL22-like INTERGENIC
2R	9269219	2R_9269219_SNP [dm3] 2R_13381714_SNP [dm6]	A	G	4.252e^-4	0.877	INTERGENIC
3R	19508911	3R_19508911_SNP [dm3] 3R_23683189_SNP [dm6]	A	C	4.259e^-4	0.877	SYNONYMOUS_CODING CG16710 UPSTREAM CG18754 DOWNSTREAM eIF-3p66
3R	15450921	3R_15450921_SNP [dm3] 3R_19625199_SNP [dm6]	T	G	4.263e^-4	0.877	UPSTREAM CG6231 INTRON CG6231
2R	14457871	2R_14457871_SNP [dm3] 2R_18570366_SNP [dm6]	G	T	4.266e^-4	0.877	INTRON GEFmeso
2L	19754381	2L_19754381_SNP [dm3] 2L_19754381_SNP [dm6]	T	G	4.276e^-4	0.877	INTRON CG10631	TF binding site BDTNP1_TFBS_dl
2L	6025793	2L_6025793_SNP [dm3] 2L_6025793_SNP [dm6]	G	A	4.277e^-4	0.877	DOWNSTREAM CG9109 INTERGENIC
2L	6025950	2L_6025950_SNP [dm3] 2L_6025950_SNP [dm6]	A	G	4.279e^-4	0.877	SPLICE_SITE_REGION CG9109 UTR_3_PRIME CG9109
3R	3541692	3R_3541692_SNP [dm3] 3R_7715970_SNP [dm6]	G	C	4.289e^-4	0.877	INTERGENIC
2L	14474796	2L_14474796_SNP [dm3] 2L_14474796_SNP [dm6]	G	T	4.303e^-4	0.877	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3609679	3L_3609679_SNP [dm3] 3L_3609679_SNP [dm6]	A	C	4.304e^-4	0.877	UTR_3_PRIME Eip63E
X	3658906	X_3658906_DEL [dm3] X_3764873_DEL [dm6]	AAATTT	A	4.305e^-4	0.877	INTRON tlk
2L	4394391	2L_4394391_SNP [dm3] 2L_4394391_SNP [dm6]	T	A	4.306e^-4	0.877	SYNONYMOUS_CODING l_2_k05819 UPSTREAM CG3652	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	5501679	2R_5501679_SNP [dm3] 2R_9614174_SNP [dm6]	A	G	4.315e^-4	0.877	INTRON CR44069 & 1 other
X	18762214	X_18762214_SNP [dm3] X_18868181_SNP [dm6]	C	T	4.315e^-4	0.877	INTRON CG34401	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11558297	2L_11558297_SNP [dm3] 2L_11558297_SNP [dm6]	A	G	4.330e^-4	0.877	INTERGENIC
3R	20980462	3R_20980462_SNP [dm3] 3R_25154740_SNP [dm6]	G	A	4.337e^-4	0.877	INTERGENIC
3R	14865255	3R_14865255_SNP [dm3] 3R_19039533_SNP [dm6]	T	G	4.341e^-4	0.877	NON_SYNONYMOUS_CODING CG6026	TF binding site mE1_TFBS_cad
2R	14384117	2R_14384117_SNP [dm3] 2R_18496612_SNP [dm6]	C	T	4.343e^-4	0.877	INTRON CG30116
3L	1839387	3L_1839387_SNP [dm3] 3L_1839387_SNP [dm6]	G	A	4.343e^-4	0.877	DOWNSTREAM Cpr62Bc INTERGENIC
3R	12199970	3R_12199970_SNP [dm3] 3R_16374248_SNP [dm6]	C	T	4.347e^-4	0.877	DOWNSTREAM ss INTERGENIC
3R	9138659	3R_9138659_SNP [dm3] 3R_13312937_SNP [dm6]	A	T	4.348e^-4	0.877	NON_SYNONYMOUS_CODING CG44142 DOWNSTREAM CG32473
2R	16855031	2R_16855031_SNP [dm3] 2R_20967526_SNP [dm6]	C	T	4.349e^-4	0.877	INTERGENIC
2R	17607601	2R_17607601_INS [dm3] 2R_21720096_INS [dm6]	T	TTAC	4.351e^-4	0.877	UPSTREAM LBR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	5520397	3L_5520397_DEL [dm3] 3L_5527297_DEL [dm6]	CGG	C	4.353e^-4	0.877	INTRON Lkr
3R	12676676	3R_12676676_DEL [dm3] 3R_16850954_DEL [dm6]	AA	A	4.363e^-4	0.877	INTRON iab-8 EXON iab-4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	19814685	3R_19814685_SNP [dm3] 3R_23988963_SNP [dm6]	G	A	4.366e^-4	0.877	UTR_3_PRIME CG13604 DOWNSTREAM CG5902
2L	12225668	2L_12225668_SNP [dm3] 2L_12225668_SNP [dm6]	C	A	4.371e^-4	0.877	INTRON aret
X	1043378	X_1043378_SNP [dm3] X_1149345_SNP [dm6]	C	A	4.374e^-4	0.877	INTERGENIC
3R	16330846	3R_16330846_SNP [dm3] 3R_20505124_SNP [dm6]	A	T	4.379e^-4	0.877	SYNONYMOUS_CODING Or92a
X	19994977	X_19994977_SNP [dm3] X_20100944_SNP [dm6]	A	G	4.382e^-4	0.877	INTERGENIC	transposable element FlyBase
2R	5099745	2R_5099745_SNP [dm3] 2R_9212240_SNP [dm6]	G	A	4.386e^-4	0.877	UPSTREAM CR45309 INTERGENIC
2L	11215033	2L_11215033_SNP [dm3] 2L_11215033_SNP [dm6]	G	C	4.387e^-4	0.877	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc
2R	15334687	2R_15334687_SNP [dm3] 2R_19447182_SNP [dm6]	C	T	4.390e^-4	0.877	UPSTREAM EloC DOWNSTREAM betaTub56D INTERGENIC
2R	9644739	2R_9644739_SNP [dm3] 2R_13757234_SNP [dm6]	G	T	4.391e^-4	0.877	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9579314	3L_9579314_SNP [dm3] 3L_9586214_SNP [dm6]	T	A	4.392e^-4	0.877	INTRON CG42673
3L	11603368	3L_11603368_SNP [dm3] 3L_11610268_SNP [dm6]	T	G	4.392e^-4	0.877	NON_SYNONYMOUS_CODING CG42832 UPSTREAM CG6091 DOWNSTREAM Muc68Ca	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9865110	3L_9865110_SNP [dm3] 3L_9872010_SNP [dm6]	C	T	4.393e^-4	0.877	INTERGENIC	TF binding site mE1_TFBS_D
3R	20202040	3R_20202040_INS [dm3] 3R_24376318_INS [dm6]	C	CA	4.395e^-4	0.877	UPSTREAM CG17781 & 1 other INTERGENIC
3R	18162870	3R_18162870_SNP [dm3] 3R_22337148_SNP [dm6]	A	G	4.396e^-4	0.877	NON_SYNONYMOUS_CODING CG5388
2L	9702130	2L_9702130_SNP [dm3] 2L_9702130_SNP [dm6]	A	C	4.397e^-4	0.877	SPLICE_SITE_REGION pelo DOWNSTREAM CG31710 INTRON pelo	TF binding site mE1_TFBS_chinmo
3R	3331361	3R_3331361_SNP [dm3] 3R_7505639_SNP [dm6]	A	T	4.410e^-4	0.877	UPSTREAM alpha-Est9 INTERGENIC
X	3657220	X_3657220_DEL [dm3] X_3763187_DEL [dm6]	GTATG	G	4.415e^-4	0.877	INTRON tlk
3R	27032168	3R_27032168_SNP [dm3] 3R_31206446_SNP [dm6]	T	A	4.416e^-4	0.877	INTRON chp	TF binding site mE1_TFBS_cad
3L	18442993	3L_18442993_SNP [dm3] 3L_18449893_SNP [dm6]	A	T	4.417e^-4	0.877	INTERGENIC
2L	5883126	2L_5883126_SNP [dm3] 2L_5883126_SNP [dm6]	G	A	4.440e^-4	0.877	UPSTREAM CG44574 INTERGENIC
3R	19533393	3R_19533393_SNP [dm3] 3R_23707671_SNP [dm6]	G	T	4.440e^-4	0.877	UPSTREAM CR44052 INTRON CG31414
2R	19323137	2R_19323137_SNP [dm3] 2R_23435614_SNP [dm6]	A	G	4.440e^-4	0.877	INTERGENIC
2R	15048800	2R_15048800_SNP [dm3] 2R_19161295_SNP [dm6]	C	T	4.477e^-4	0.877	SYNONYMOUS_CODING ena
2R	10652092	2R_10652092_SNP [dm3] 2R_14764587_SNP [dm6]	C	T	4.477e^-4	0.877	INTRON Spred
2R	19316423	2R_19316423_SNP [dm3] 2R_23428900_SNP [dm6]	T	C	4.478e^-4	0.877	INTRON CG9815
2R	19323166	2R_19323166_SNP [dm3] 2R_23435643_SNP [dm6]	G	A	4.482e^-4	0.877	INTERGENIC
2L	19754876	2L_19754876_SNP [dm3] 2L_19754876_SNP [dm6]	T	C	4.490e^-4	0.877	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14611804	3R_14611804_SNP [dm3] 3R_18786082_SNP [dm6]	C	T	4.505e^-4	0.877	INTRON CG7720
2R	6116159	2R_6116159_SNP [dm3] 2R_10228654_SNP [dm6]	T	C	4.507e^-4	0.877	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	10646174	2L_10646174_DEL [dm3] 2L_10646174_DEL [dm6]	AAGTAGCCAAATCTATA...	A	4.510e^-4	0.877	UPSTREAM CG17097 DOWNSTREAM CG18284 INTERGENIC
3L	9976162	3L_9976162_SNP [dm3] 3L_9983062_SNP [dm6]	G	A	4.512e^-4	0.877	INTRON dpr6
3R	3219936	3R_3219936_SNP [dm3] 3R_7394214_SNP [dm6]	G	A	4.515e^-4	0.877	INTERGENIC	TF binding site mE1_TFBS_inv
3R	14041805	3R_14041805_SNP [dm3] 3R_18216083_SNP [dm6]	G	C	4.518e^-4	0.877	UPSTREAM CG14314 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7904743	3L_7904743_SNP [dm3] 3L_7911643_SNP [dm6]	G	A	4.520e^-4	0.877	UTR_5_PRIME pbl UPSTREAM CG8281	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	16330955	3R_16330955_SNP [dm3] 3R_20505233_SNP [dm6]	C	A	4.524e^-4	0.877	NON_SYNONYMOUS_CODING Or92a
3R	25198289	3R_25198289_SNP [dm3] 3R_29372567_SNP [dm6]	G	T	4.530e^-4	0.877	INTERGENIC
2R	4879378	2R_4879378_SNP [dm3] 2R_8991873_SNP [dm6]	A	T	4.540e^-4	0.877	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	6982501	3L_6982501_SNP [dm3] 3L_6989401_SNP [dm6]	C	A	4.545e^-4	0.877	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	14200403	2R_14200403_SNP [dm3] 2R_18312898_SNP [dm6]	G	A	4.550e^-4	0.877	DOWNSTREAM Tango8 INTRON sbb
3L	9430257	3L_9430257_SNP [dm3] 3L_9437157_SNP [dm6]	G	A	4.553e^-4	0.877	SYNONYMOUS_CODING MTF-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17399733	2L_17399733_SNP [dm3] 2L_17399733_SNP [dm6]	C	T	4.554e^-4	0.877	INTRON CLIP-190
3R	14298575	3R_14298575_SNP [dm3] 3R_18472853_SNP [dm6]	A	T	4.555e^-4	0.877	INTRON fru
2L	17395866	2L_17395866_SNP [dm3] 2L_17395866_SNP [dm6]	A	C	4.573e^-4	0.877	INTRON CLIP-190	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	10506850	3L_10506850_SNP [dm3] 3L_10513750_SNP [dm6]	G	A	4.574e^-4	0.877	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl
3L	15749790	3L_15749790_SNP [dm3] 3L_15756690_SNP [dm6]	C	T	4.576e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10293598	2L_10293598_SNP [dm3] 2L_10293598_SNP [dm6]	T	A	4.576e^-4	0.877	INTRON Hand	regulatory region REDfly_CRMs
3R	6137335	3R_6137335_SNP [dm3] 3R_10311613_SNP [dm6]	G	A	4.587e^-4	0.877	UTR_5_PRIME CG6293 DOWNSTREAM Bruce	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	689583	3L_689583_SNP [dm3] 3L_689583_SNP [dm6]	T	C	4.594e^-4	0.877	SYNONYMOUS_CODING CG32483 UPSTREAM RabX6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3L	689586	3L_689586_SNP [dm3] 3L_689586_SNP [dm6]	A	G	4.594e^-4	0.877	SYNONYMOUS_CODING CG32483 UPSTREAM RabX6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2R	4326968	2R_4326968_DEL [dm3] 2R_8439463_DEL [dm6]	AGTAAA	A	4.599e^-4	0.877	UTR_3_PRIME Cyp4ad1 DOWNSTREAM Lcp4
2L	19383464	2L_19383464_SNP [dm3] 2L_19383464_SNP [dm6]	A	C	4.600e^-4	0.877	UTR_3_PRIME fon DOWNSTREAM fon & 1 other
3L	10507221	3L_10507221_SNP [dm3] 3L_10514121_SNP [dm6]	T	A	4.602e^-4	0.877	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15450555	3R_15450555_SNP [dm3] 3R_19624833_SNP [dm6]	G	C	4.611e^-4	0.877	UPSTREAM CG6231 INTRON CG6231
X	19995044	X_19995044_SNP [dm3] X_20101011_SNP [dm6]	A	G	4.613e^-4	0.877	INTERGENIC	transposable element FlyBase
2L	6650380	2L_6650380_SNP [dm3] 2L_6650380_SNP [dm6]	G	A	4.614e^-4	0.877	NON_SYNONYMOUS_CODING Tango1	TF binding site mE1_TFBS_sens
3R	3242441	3R_3242441_SNP [dm3] 3R_7416719_SNP [dm6]	G	A	4.616e^-4	0.877	INTERGENIC
2L	5469738	2L_5469738_SNP [dm3] 2L_5469738_SNP [dm6]	C	G	4.618e^-4	0.877	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5810620	3L_5810620_SNP [dm3] 3L_5817520_SNP [dm6]	C	T	4.622e^-4	0.877	INTRON vn
X	19504976	X_19504976_SNP [dm3] X_19610943_SNP [dm6]	C	G	4.634e^-4	0.877	UTR_3_PRIME CG14207 UPSTREAM Tyler & 1 other
3L	16981350	3L_16981350_SNP [dm3] 3L_16988250_SNP [dm6]	C	T	4.636e^-4	0.877	INTRON Exn
X	7432322	X_7432322_SNP [dm3] X_7538289_SNP [dm6]	A	C	4.641e^-4	0.877	INTRON CG32719	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19593139	3R_19593139_SNP [dm3] 3R_23767417_SNP [dm6]	T	A	4.642e^-4	0.877	UTR_5_PRIME CG10214 UPSTREAM CG10375 DOWNSTREAM Lsd-1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	11558204	2L_11558204_SNP [dm3] 2L_11558204_SNP [dm6]	G	C	4.647e^-4	0.877	INTERGENIC
3R	22230790	3R_22230790_SNP [dm3] 3R_26405068_SNP [dm6]	G	T	4.651e^-4	0.877	INTERGENIC
3L	3029549	3L_3029549_SNP [dm3] 3L_3029549_SNP [dm6]	G	A	4.656e^-4	0.877	INTERGENIC
2R	19110978	2R_19110978_SNP [dm3] 2R_23223455_SNP [dm6]	A	G	4.659e^-4	0.877	INTERGENIC
2R	14545406	2R_14545406_SNP [dm3] 2R_18657901_SNP [dm6]	C	T	4.674e^-4	0.877	DOWNSTREAM Gint3 & 1 other INTRON SP2637
2L	11485760	2L_11485760_SNP [dm3] 2L_11485760_SNP [dm6]	G	A	4.676e^-4	0.877	SPLICE_SITE_REGION CG43355 & 1 other UTR_3_PRIME CG43355 UPSTREAM sala INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19983135	2R_19983135_SNP [dm3] 2R_24095612_SNP [dm6]	G	A	4.678e^-4	0.877	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25536213	3R_25536213_SNP [dm3] 3R_29710491_SNP [dm6]	T	C	4.684e^-4	0.877	INTERGENIC
X	3641807	X_3641807_SNP [dm3] X_3747774_SNP [dm6]	A	T	4.686e^-4	0.877	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7375826	2L_7375826_SNP [dm3] 2L_7375826_SNP [dm6]	T	C	4.690e^-4	0.877	SPLICE_SITE_REGION Wnt10 INTRON Wnt10
3R	14129814	3R_14129814_SNP [dm3] 3R_18304092_SNP [dm6]	G	C	4.692e^-4	0.877	INTRON PKD	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2487430	X_2487430_SNP [dm3] X_2593397_SNP [dm6]	T	A	4.692e^-4	0.877	UPSTREAM egh INTRON egh
X	13968389	X_13968389_SNP [dm3] X_14074356_SNP [dm6]	C	G	4.699e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	13968390	X_13968390_SNP [dm3] X_14074357_SNP [dm6]	T	A	4.699e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	15883606	X_15883606_DEL [dm3] X_15989573_DEL [dm6]	CGA	C	4.702e^-4	0.877	INTRON eIF5
2L	3436950	2L_3436950_SNP [dm3] 2L_3436950_SNP [dm6]	C	G	4.703e^-4	0.877	INTERGENIC
3L	850394	3L_850394_SNP [dm3] 3L_850394_SNP [dm6]	G	A	4.705e^-4	0.877	UPSTREAM CG13890 INTRON CG13889	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	9597360	3L_9597360_SNP [dm3] 3L_9604260_SNP [dm6]	C	A	4.710e^-4	0.877	INTRON CG3280
2L	6426259	2L_6426259_SNP [dm3] 2L_6426259_SNP [dm6]	T	A	4.713e^-4	0.877	UTR_3_PRIME Fic DOWNSTREAM CG9527
X	18762191	X_18762191_DEL [dm3] X_18868158_DEL [dm6]	TGAAGTGGCCCCAATTT...	C	4.721e^-4	0.877	INTRON CG34401	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11494609	2L_11494609_SNP [dm3] 2L_11494609_SNP [dm6]	T	C	4.727e^-4	0.877	INTERGENIC
3R	25065716	3R_25065716_SNP [dm3] 3R_29239994_SNP [dm6]	G	A	4.730e^-4	0.877	DOWNSTREAM CG31445 INTRON CG31427
3R	16330747	3R_16330747_SNP [dm3] 3R_20505025_SNP [dm6]	G	A	4.737e^-4	0.877	SYNONYMOUS_CODING Or92a
3R	16330870	3R_16330870_SNP [dm3] 3R_20505148_SNP [dm6]	C	T	4.738e^-4	0.877	SYNONYMOUS_CODING Or92a
3R	23590769	3R_23590769_SNP [dm3] 3R_27765047_SNP [dm6]	T	G	4.744e^-4	0.877	INTERGENIC
X	3645536	X_3645536_SNP [dm3] X_3751503_SNP [dm6]	C	T	4.745e^-4	0.877	INTRON tlk	TF binding site mE1_TFBS_HSA
3R	15879383	3R_15879383_SNP [dm3] 3R_20053661_SNP [dm6]	T	G	4.752e^-4	0.877	INTRON CG17193	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14457874	2R_14457874_INS [dm3] 2R_18570369_INS [dm6]	A	ATA	4.760e^-4	0.877	INTRON GEFmeso
2L	11622482	2L_11622482_SNP [dm3] 2L_11622482_SNP [dm6]	C	T	4.760e^-4	0.877	SYNONYMOUS_CODING kek2	TF binding site mE1_TFBS_chinmo
2R	6969713	2R_6969713_SNP [dm3] 2R_11082208_SNP [dm6]	C	T	4.762e^-4	0.877	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3184546	3R_3184546_SNP [dm3] 3R_7358824_SNP [dm6]	G	T	4.762e^-4	0.877	INTERGENIC
3R	25016977	3R_25016977_SNP [dm3] 3R_29191255_SNP [dm6]	G	C	4.767e^-4	0.877	INTRON CG14509
2L	11699929	2L_11699929_SNP [dm3] 2L_11699929_SNP [dm6]	T	A	4.770e^-4	0.877	INTERGENIC
2R	16457317	2R_16457317_SNP [dm3] 2R_20569812_SNP [dm6]	G	A	4.777e^-4	0.877	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11101090	3L_11101090_SNP [dm3] 3L_11107990_SNP [dm6]	A	T	4.778e^-4	0.877	UPSTREAM CG12522 & 1 other DOWNSTREAM CG34012 INTERGENIC
3R	13608071	3R_13608071_SNP [dm3] 3R_17782349_SNP [dm6]	A	C	4.793e^-4	0.877	NON_SYNONYMOUS_CODING CG43102 UTR_5_PRIME CG43102	TF binding site mE1_TFBS_cad
X	1043298	X_1043298_INS [dm3] X_1149265_INS [dm6]	A	AACACGTCGATCCTCGTCCT...	4.795e^-4	0.877	INTERGENIC
3L	8682531	3L_8682531_SNP [dm3] 3L_8689431_SNP [dm6]	C	A	4.796e^-4	0.877	INTERGENIC
X	8607069	X_8607069_SNP [dm3] X_8713036_SNP [dm6]	T	C	4.800e^-4	0.877	SYNONYMOUS_CODING CG2004 DOWNSTREAM Hexo2
X	16599853	X_16599853_SNP [dm3] X_16705820_SNP [dm6]	A	T	4.802e^-4	0.877	DOWNSTREAM CG9672 & 1 other INTRON CG4678
X	1041785	X_1041785_SNP [dm3] X_1147752_SNP [dm6]	G	T	4.803e^-4	0.877	INTERGENIC
2L	10751632	2L_10751632_SNP [dm3] 2L_10751632_SNP [dm6]	G	C	4.810e^-4	0.877	INTRON CG17124	TF binding site mE1_TFBS_cad
2L	10706940	2L_10706940_SNP [dm3] 2L_10706940_SNP [dm6]	T	A	4.811e^-4	0.877	UPSTREAM Lip2 INTRON Lip2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26709429	3R_26709429_SNP [dm3] 3R_30883707_SNP [dm6]	T	A	4.819e^-4	0.877	UTR_3_PRIME Sap-r UPSTREAM CG15547
X	7719958	X_7719958_SNP [dm3] X_7825925_SNP [dm6]	T	A	4.826e^-4	0.877	UPSTREAM CG1402 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18395645	2R_18395645_SNP [dm3] 2R_22508140_SNP [dm6]	T	G	4.833e^-4	0.877	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10652243	2R_10652243_SNP [dm3] 2R_14764738_SNP [dm6]	A	G	4.842e^-4	0.877	INTRON Spred

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.081e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.07627
In_3R_P	0.02632

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.2241	0.0726
In_3R_P	6.8214	0.033

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2110 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	19983134	2R_19983134_SNP [dm3] 2R_24095611_SNP [dm6]	A	C	2.475e^-7	0.281	NON_SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10938597	2L_10938597_SNP [dm3] 2L_10938597_SNP [dm6]	T	C	3.000e^-7	0.281	DOWNSTREAM CG14072 INTRON dpr2	TF binding site mE1_TFBS_HSA
2L	10938598	2L_10938598_SNP [dm3] 2L_10938598_SNP [dm6]	G	A	5.383e^-7	0.291	DOWNSTREAM CG14072 INTRON dpr2	TF binding site mE1_TFBS_HSA
2R	19983135	2R_19983135_SNP [dm3] 2R_24095612_SNP [dm6]	G	A	6.205e^-7	0.291	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18485664	2R_18485664_SNP [dm3] 2R_22598159_SNP [dm6]	A	T	1.174e^-6	0.417	INTRON CG4269	TF binding site mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3R	13454440	3R_13454440_SNP [dm3] 3R_17628718_SNP [dm6]	T	G	1.446e^-6	0.417	SYNONYMOUS_CODING CG14325 DOWNSTREAM tRNA:V4:90C
2R	14587720	2R_14587720_SNP [dm3] 2R_18700215_SNP [dm6]	T	C	1.555e^-6	0.417	SYNONYMOUS_CODING Sik3
3R	13454504	3R_13454504_SNP [dm3] 3R_17628782_SNP [dm6]	T	C	1.921e^-6	0.434	SYNONYMOUS_CODING CG14325 DOWNSTREAM tRNA:V4:90C
3L	6766028	3L_6766028_SNP [dm3] 3L_6772928_SNP [dm6]	G	A	2.082e^-6	0.434	INTERGENIC
3R	14788150	3R_14788150_SNP [dm3] 3R_18962428_SNP [dm6]	A	G	2.987e^-6	0.556	INTRON CG42613 & 1 other
3L	13019927	3L_13019927_SNP [dm3] 3L_13026827_SNP [dm6]	G	A	3.584e^-6	0.556	UPSTREAM Zmynd10 INTERGENIC
2L	11931180	2L_11931180_SNP [dm3] 2L_11931180_SNP [dm6]	A	G	3.825e^-6	0.556	INTERGENIC
3R	12457693	3R_12457693_SNP [dm3] 3R_16631971_SNP [dm6]	C	T	4.216e^-6	0.556	SYNONYMOUS_CODING Fas1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16456548	2R_16456548_SNP [dm3] 2R_20569043_SNP [dm6]	A	G	4.359e^-6	0.556	INTRON qsm
2R	4879378	2R_4879378_SNP [dm3] 2R_8991873_SNP [dm6]	A	T	4.446e^-6	0.556	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	10932457	2L_10932457_SNP [dm3] 2L_10932457_SNP [dm6]	G	A	5.540e^-6	0.61	INTRON dpr2
2R	4866201	2R_4866201_SNP [dm3] 2R_8978696_SNP [dm6]	T	A	5.686e^-6	0.61	INTRON CG8213	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5358880	X_5358880_SNP [dm3] X_5464847_SNP [dm6]	G	A	5.853e^-6	0.61	UTR_5_PRIME SPR INTRON SPR
3R	9130494	3R_9130494_SNP [dm3] 3R_13304772_SNP [dm6]	C	T	6.461e^-6	0.627	START_GAINED CG32473 UTR_5_PRIME CG32473 DOWNSTREAM CG43208 INTRON CG32473	TF binding site mE1_TFBS_Trl
2R	8449579	2R_8449579_SNP [dm3] 2R_12562074_SNP [dm6]	G	T	6.810e^-6	0.627	UTR_5_PRIME CG30056 INTRON fra
2R	4879366	2R_4879366_DEL [dm3] 2R_8991861_DEL [dm6]	TTTTACAAA	T	7.301e^-6	0.627	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	19901018	2R_19901018_SNP [dm3] 2R_24013495_SNP [dm6]	C	A	7.551e^-6	0.627	INTRON Unc-89
2R	4879377	2R_4879377_SNP [dm3] 2R_8991872_SNP [dm6]	T	C	7.690e^-6	0.627	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	6757322	2R_6757322_SNP [dm3] 2R_10869817_SNP [dm6]	C	T	1.024e^-5	0.687	INTRON CG30015
2R	14587777	2R_14587777_SNP [dm3] 2R_18700272_SNP [dm6]	G	A	1.029e^-5	0.687	SYNONYMOUS_CODING Sik3
2R	17149670	2R_17149670_SNP [dm3] 2R_21262165_SNP [dm6]	T	C	1.091e^-5	0.687	INTRON Rgk3
X	4065869	X_4065869_SNP [dm3] X_4171836_SNP [dm6]	T	C	1.119e^-5	0.687	INTRON Fas2
X	4166673	X_4166673_SNP [dm3] X_4272640_SNP [dm6]	G	A	1.146e^-5	0.687	INTERGENIC
2R	8449604	2R_8449604_SNP [dm3] 2R_12562099_SNP [dm6]	G	T	1.249e^-5	0.687	UTR_5_PRIME CG30056 INTRON fra
2R	19901003	2R_19901003_SNP [dm3] 2R_24013480_SNP [dm6]	T	C	1.302e^-5	0.687	INTRON Unc-89
2L	10928342	2L_10928342_SNP [dm3] 2L_10928342_SNP [dm6]	T	A	1.335e^-5	0.687	INTRON dpr2
2R	9774607	2R_9774607_SNP [dm3] 2R_13887102_SNP [dm6]	T	A	1.394e^-5	0.687	NON_SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
3R	17085033	3R_17085033_SNP [dm3] 3R_21259311_SNP [dm6]	G	A	1.432e^-5	0.687	INTRON ETHR	TF binding site mE1_TFBS_cad
2L	10928301	2L_10928301_DEL [dm3] 2L_10928301_DEL [dm6]	ATA	C	1.488e^-5	0.687	INTRON dpr2
2L	10928308	2L_10928308_SNP [dm3] 2L_10928308_SNP [dm6]	T	G	1.488e^-5	0.687	INTRON dpr2
2L	10928310	2L_10928310_DEL [dm3] 2L_10928310_DEL [dm6]	TGATTGTTCAGGAATTC...	T	1.488e^-5	0.687	INTRON dpr2
2L	10928352	2L_10928352_SNP [dm3] 2L_10928352_SNP [dm6]	A	T	1.488e^-5	0.687	INTRON dpr2
2R	17296002	2R_17296002_SNP [dm3] 2R_21408497_SNP [dm6]	A	G	1.518e^-5	0.687	INTRON Sdc
3R	8687170	3R_8687170_SNP [dm3] 3R_12861448_SNP [dm6]	T	C	1.551e^-5	0.687	INTERGENIC
2L	10928328	2L_10928328_SNP [dm3] 2L_10928328_SNP [dm6]	G	C	1.600e^-5	0.687	INTRON dpr2
3L	10243200	3L_10243200_SNP [dm3] 3L_10250100_SNP [dm6]	C	T	1.646e^-5	0.687	INTERGENIC
3R	8679309	3R_8679309_SNP [dm3] 3R_12853587_SNP [dm6]	A	G	1.646e^-5	0.687	INTERGENIC
X	18144771	X_18144771_SNP [dm3] X_18250738_SNP [dm6]	T	G	1.665e^-5	0.687	INTERGENIC
2L	3588858	2L_3588858_SNP [dm3] 2L_3588858_SNP [dm6]	G	T	1.668e^-5	0.687	EXON CR43823	TF binding site mE1_TFBS_HSA
3R	9178100	3R_9178100_SNP [dm3] 3R_13352378_SNP [dm6]	C	A	1.675e^-5	0.687	INTERGENIC
3R	25065716	3R_25065716_SNP [dm3] 3R_29239994_SNP [dm6]	G	A	1.686e^-5	0.687	DOWNSTREAM CG31445 INTRON CG31427
2L	10928288	2L_10928288_SNP [dm3] 2L_10928288_SNP [dm6]	T	G	1.828e^-5	0.704	INTRON dpr2
3L	1024826	3L_1024826_SNP [dm3] 3L_1024826_SNP [dm6]	G	C	1.861e^-5	0.704	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	7071513	X_7071513_SNP [dm3] X_7177480_SNP [dm6]	G	T	1.884e^-5	0.704	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9130399	3R_9130399_SNP [dm3] 3R_13304677_SNP [dm6]	T	C	1.884e^-5	0.704	UPSTREAM CG32473 DOWNSTREAM CG43208 INTRON CG32473	TF binding site mE1_TFBS_Trl
3R	12489850	3R_12489850_SNP [dm3] 3R_16664128_SNP [dm6]	A	C	1.914e^-5	0.704	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4866654	2R_4866654_SNP [dm3] 2R_8979149_SNP [dm6]	G	A	2.005e^-5	0.708	INTRON CG8213
X	18842936	X_18842936_SNP [dm3] X_18948903_SNP [dm6]	A	G	2.033e^-5	0.708	INTRON CG43759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	14014771	X_14014771_MNP [dm3] X_14120738_MNP [dm6]	GGT	ATG	2.071e^-5	0.708	INTERGENIC
X	11177716	X_11177716_SNP [dm3] X_11283683_SNP [dm6]	C	T	2.077e^-5	0.708	INTRON CG44422
3R	9068891	3R_9068891_SNP [dm3] 3R_13243169_SNP [dm6]	A	G	2.117e^-5	0.709	INTRON Ace
3R	21899152	3R_21899152_SNP [dm3] 3R_26073430_SNP [dm6]	G	T	2.317e^-5	0.712	INTERGENIC
2L	10938497	2L_10938497_SNP [dm3] 2L_10938497_SNP [dm6]	T	C	2.406e^-5	0.712	DOWNSTREAM CG14072 INTRON dpr2
2R	9999719	2R_9999719_SNP [dm3] 2R_14112214_SNP [dm6]	A	G	2.560e^-5	0.712	INTRON Prosap
2L	10928343	2L_10928343_SNP [dm3] 2L_10928343_SNP [dm6]	A	T	2.610e^-5	0.712	INTRON dpr2
2L	14270848	2L_14270848_SNP [dm3] 2L_14270848_SNP [dm6]	G	C	2.623e^-5	0.712	INTRON wb
2L	10928289	2L_10928289_SNP [dm3] 2L_10928289_SNP [dm6]	T	A	2.693e^-5	0.712	INTRON dpr2
3L	18980788	3L_18980788_SNP [dm3] 3L_18987688_SNP [dm6]	C	T	2.715e^-5	0.712	SYNONYMOUS_CODING CG11619
3R	8679004	3R_8679004_SNP [dm3] 3R_12853282_SNP [dm6]	C	T	2.773e^-5	0.712	INTERGENIC
3L	13331807	3L_13331807_SNP [dm3] 3L_13338707_SNP [dm6]	A	T	2.794e^-5	0.712	INTERGENIC
3R	25536213	3R_25536213_SNP [dm3] 3R_29710491_SNP [dm6]	T	C	2.817e^-5	0.712	INTERGENIC
3R	4971303	3R_4971303_SNP [dm3] 3R_9145581_SNP [dm6]	A	C	2.827e^-5	0.712	INTRON pum	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8395318	3R_8395318_SNP [dm3] 3R_12569596_SNP [dm6]	G	T	2.828e^-5	0.712	INTRON Octbeta2R
3R	8670219	3R_8670219_SNP [dm3] 3R_12844497_SNP [dm6]	T	C	2.869e^-5	0.712	INTRON beat-Va
2R	16456582	2R_16456582_SNP [dm3] 2R_20569077_SNP [dm6]	A	G	2.908e^-5	0.712	INTRON qsm
2L	10928296	2L_10928296_SNP [dm3] 2L_10928296_SNP [dm6]	T	G	2.910e^-5	0.712	INTRON dpr2
X	19855539	X_19855539_SNP [dm3] X_19961506_SNP [dm6]	C	A	2.919e^-5	0.712	UTR_5_PRIME Nep3 UPSTREAM Nep3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14200389	2R_14200389_SNP [dm3] 2R_18312884_SNP [dm6]	G	T	2.954e^-5	0.712	DOWNSTREAM Tango8 INTRON sbb
X	5358881	X_5358881_SNP [dm3] X_5464848_SNP [dm6]	C	G	2.967e^-5	0.712	UTR_5_PRIME SPR INTRON SPR
X	7071353	X_7071353_SNP [dm3] X_7177320_SNP [dm6]	C	G	2.993e^-5	0.712	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3116436	2R_3116436_SNP [dm3] 2R_7228931_SNP [dm6]	C	A	2.998e^-5	0.712	INTERGENIC
2R	4868418	2R_4868418_DEL [dm3] 2R_8980913_DEL [dm6]	ATAAAA	G	3.067e^-5	0.712	INTRON CG8213	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5358871	X_5358871_SNP [dm3] X_5464838_SNP [dm6]	T	A	3.087e^-5	0.712	UTR_5_PRIME SPR INTRON SPR
3R	13454344	3R_13454344_SNP [dm3] 3R_17628622_SNP [dm6]	A	G	3.087e^-5	0.712	SYNONYMOUS_CODING CG14325 DOWNSTREAM tRNA:V4:90C
2L	18439233	2L_18439233_SNP [dm3] 2L_18439233_SNP [dm6]	T	A	3.097e^-5	0.712	INTERGENIC
2L	11935603	2L_11935603_SNP [dm3] 2L_11935603_SNP [dm6]	G	T	3.126e^-5	0.712	NON_SYNONYMOUS_CODING Or33a UPSTREAM Or33b
3R	13454335	3R_13454335_SNP [dm3] 3R_17628613_SNP [dm6]	C	G	3.142e^-5	0.712	SYNONYMOUS_CODING CG14325 DOWNSTREAM tRNA:V4:90C
2L	11966312	2L_11966312_SNP [dm3] 2L_11966312_SNP [dm6]	C	A	3.165e^-5	0.712	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18485403	2R_18485403_SNP [dm3] 2R_22597898_SNP [dm6]	A	C	3.224e^-5	0.712	UTR_5_PRIME CG4269 UPSTREAM CR45328	TF binding site mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	7071356	X_7071356_SNP [dm3] X_7177323_SNP [dm6]	T	A	3.256e^-5	0.712	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7071344	X_7071344_SNP [dm3] X_7177311_SNP [dm6]	T	A	3.264e^-5	0.712	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12180381	3L_12180381_SNP [dm3] 3L_12187281_SNP [dm6]	A	G	3.313e^-5	0.714	SYNONYMOUS_STOP CG6910	TF binding site mE1_TFBS_cad
3R	16643841	3R_16643841_SNP [dm3] 3R_20818119_SNP [dm6]	A	T	3.465e^-5	0.715	INTRON CG17270
3R	17003206	3R_17003206_SNP [dm3] 3R_21177484_SNP [dm6]	T	A	3.500e^-5	0.715	INTRON SNF4Agamma
2L	16428832	2L_16428832_SNP [dm3] 2L_16428832_SNP [dm6]	T	C	3.500e^-5	0.715	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9124887	3R_9124887_SNP [dm3] 3R_13299165_SNP [dm6]	G	A	3.594e^-5	0.715	NON_SYNONYMOUS_CODING CG8774 UTR_5_PRIME CG8774 DOWNSTREAM CG8773	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	12834851	3L_12834851_SNP [dm3] 3L_12841751_SNP [dm6]	T	A	3.673e^-5	0.715	INTRON CG10960	TF binding site mE1_TFBS_zfh1
2L	10835284	2L_10835284_SNP [dm3] 2L_10835284_SNP [dm6]	A	C	3.844e^-5	0.715	INTRON Nos
3R	22982449	3R_22982449_SNP [dm3] 3R_27156727_SNP [dm6]	T	G	3.948e^-5	0.715	UTR_3_PRIME Men-b DOWNSTREAM Men-b INTRON Men-b
3R	22982310	3R_22982310_SNP [dm3] 3R_27156588_SNP [dm6]	A	G	4.004e^-5	0.715	UTR_3_PRIME Men-b DOWNSTREAM Men-b INTRON Men-b
3R	22982364	3R_22982364_SNP [dm3] 3R_27156642_SNP [dm6]	A	T	4.019e^-5	0.715	UTR_3_PRIME Men-b DOWNSTREAM Men-b INTRON Men-b
2R	19574609	2R_19574609_SNP [dm3] 2R_23687086_SNP [dm6]	A	G	4.053e^-5	0.715	SYNONYMOUS_CODING St3 UPSTREAM Pal2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18144765	X_18144765_SNP [dm3] X_18250732_SNP [dm6]	T	C	4.071e^-5	0.715	INTERGENIC
3L	16171349	3L_16171349_SNP [dm3] 3L_16178249_SNP [dm6]	T	C	4.084e^-5	0.715	UPSTREAM CR45755 DOWNSTREAM CR45754 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22982330	3R_22982330_SNP [dm3] 3R_27156608_SNP [dm6]	G	A	4.086e^-5	0.715	UTR_3_PRIME Men-b DOWNSTREAM Men-b INTRON Men-b
3R	22982344	3R_22982344_SNP [dm3] 3R_27156622_SNP [dm6]	A	T	4.086e^-5	0.715	UTR_3_PRIME Men-b DOWNSTREAM Men-b INTRON Men-b
2L	8982616	2L_8982616_SNP [dm3] 2L_8982616_SNP [dm6]	C	T	4.123e^-5	0.715	INTRON CG13101
3L	11872416	3L_11872416_SNP [dm3] 3L_11879316_SNP [dm6]	A	T	4.128e^-5	0.715	NON_SYNONYMOUS_CODING CG14128 INTRON CG44837
3R	8670267	3R_8670267_SNP [dm3] 3R_12844545_SNP [dm6]	T	A	4.171e^-5	0.715	INTRON beat-Va
3R	9282427	3R_9282427_SNP [dm3] 3R_13456705_SNP [dm6]	T	C	4.199e^-5	0.715	INTRON CR17025 & 1 other
3R	21899148	3R_21899148_SNP [dm3] 3R_26073426_SNP [dm6]	T	A	4.204e^-5	0.715	INTERGENIC
X	3322382	X_3322382_SNP [dm3] X_3428349_SNP [dm6]	C	G	4.228e^-5	0.715	UPSTREAM tRNA:CR32493 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9314671	3R_9314671_INS [dm3] 3R_13488949_INS [dm6]	T	TGTAT	4.252e^-5	0.715	INTERGENIC
2R	17296131	2R_17296131_SNP [dm3] 2R_21408626_SNP [dm6]	T	C	4.261e^-5	0.715	INTRON Sdc
2R	9774618	2R_9774618_SNP [dm3] 2R_13887113_SNP [dm6]	A	G	4.267e^-5	0.715	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
2L	16801956	2L_16801956_SNP [dm3] 2L_16801956_SNP [dm6]	A	G	4.362e^-5	0.715	DOWNSTREAM CG13280 & 1 other INTERGENIC
X	7071326	X_7071326_SNP [dm3] X_7177293_SNP [dm6]	T	A	4.423e^-5	0.715	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7071329	X_7071329_SNP [dm3] X_7177296_SNP [dm6]	T	C	4.423e^-5	0.715	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4901285	2R_4901285_SNP [dm3] 2R_9013780_SNP [dm6]	C	T	4.427e^-5	0.715	UPSTREAM CG8172 DOWNSTREAM CG13744 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	9178038	3R_9178038_SNP [dm3] 3R_13352316_SNP [dm6]	G	A	4.489e^-5	0.715	INTERGENIC
2L	11966311	2L_11966311_SNP [dm3] 2L_11966311_SNP [dm6]	C	A	4.530e^-5	0.715	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18146308	X_18146308_SNP [dm3] X_18252275_SNP [dm6]	A	T	4.538e^-5	0.715	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	8679424	3R_8679424_SNP [dm3] 3R_12853702_SNP [dm6]	C	T	4.630e^-5	0.715	INTERGENIC
3R	24571898	3R_24571898_SNP [dm3] 3R_28746176_SNP [dm6]	A	G	4.645e^-5	0.715	INTERGENIC	insulator Insulator_Class_II.mE01
2R	18142511	2R_18142511_SNP [dm3] 2R_22255006_SNP [dm6]	C	G	4.662e^-5	0.715	INTRON dve	TF binding site mE1_TFBS_chinmo
X	11152161	X_11152161_DEL [dm3] X_11258128_DEL [dm6]	CGCTGAGTTC	C	4.683e^-5	0.715	INTRON CG44422
3R	3376834	3R_3376834_SNP [dm3] 3R_7551112_SNP [dm6]	C	T	4.689e^-5	0.715	UPSTREAM CG45545 INTERGENIC
3R	27092724	3R_27092724_SNP [dm3] 3R_31267002_SNP [dm6]	T	C	4.745e^-5	0.715	INTRON ppk24
2L	10835285	2L_10835285_SNP [dm3] 2L_10835285_SNP [dm6]	T	G	4.778e^-5	0.715	INTRON Nos
X	19502657	X_19502657_SNP [dm3] X_19608624_SNP [dm6]	T	C	4.821e^-5	0.715	INTRON CG14207	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	3017786	X_3017786_SNP [dm3] X_3123753_SNP [dm6]	G	T	4.834e^-5	0.715	INTRON kirre
3R	17084910	3R_17084910_SNP [dm3] 3R_21259188_SNP [dm6]	T	A	4.840e^-5	0.715	INTRON ETHR
3R	20586682	3R_20586682_SNP [dm3] 3R_24760960_SNP [dm6]	A	T	4.937e^-5	0.715	UTR_3_PRIME AstA DOWNSTREAM asp	TF binding site mE1_TFBS_cad
2R	19101806	2R_19101806_SNP [dm3] 2R_23214283_SNP [dm6]	C	T	4.949e^-5	0.715	INTERGENIC
3L	18980647	3L_18980647_SNP [dm3] 3L_18987547_SNP [dm6]	T	C	4.954e^-5	0.715	SYNONYMOUS_CODING CG11619	TF binding site mE1_TFBS_sens
3R	14041805	3R_14041805_SNP [dm3] 3R_18216083_SNP [dm6]	G	C	5.131e^-5	0.734	UPSTREAM CG14314 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18144720	X_18144720_SNP [dm3] X_18250687_SNP [dm6]	G	T	5.166e^-5	0.734	INTERGENIC
3L	7897037	3L_7897037_SNP [dm3] 3L_7903937_SNP [dm6]	C	T	5.211e^-5	0.735	UPSTREAM pbl INTRON pbl	TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3R	9677333	3R_9677333_SNP [dm3] 3R_13851611_SNP [dm6]	C	A	5.331e^-5	0.738	INTERGENIC
X	2365996	X_2365996_SNP [dm3] X_2471963_SNP [dm6]	A	C	5.363e^-5	0.738	INTRON trol
2L	5566870	2L_5566870_SNP [dm3] 2L_5566870_SNP [dm6]	C	G	5.444e^-5	0.738	INTERGENIC
X	16403819	X_16403819_SNP [dm3] X_16509786_SNP [dm6]	G	A	5.484e^-5	0.738	INTRON para
X	5884492	X_5884492_SNP [dm3] X_5990459_SNP [dm6]	A	T	5.501e^-5	0.738	UTR_5_PRIME CG5966 INTRON CG5966
3R	21899144	3R_21899144_SNP [dm3] 3R_26073422_SNP [dm6]	G	A	5.518e^-5	0.738	INTERGENIC
X	15649386	X_15649386_SNP [dm3] X_15755353_SNP [dm6]	A	G	5.571e^-5	0.738	SYNONYMOUS_CODING Graf UPSTREAM CG8260
3L	14432747	3L_14432747_SNP [dm3] 3L_14439647_SNP [dm6]	C	A	5.573e^-5	0.738	INTRON bbg
3L	21187594	3L_21187594_SNP [dm3] 3L_21194494_SNP [dm6]	A	G	5.626e^-5	0.738	DOWNSTREAM park INTERGENIC
3R	19557613	3R_19557613_SNP [dm3] 3R_23731891_SNP [dm6]	G	A	5.628e^-5	0.738	SYNONYMOUS_CODING Rpn9 DOWNSTREAM CG10365	TF binding site mE1_TFBS_sens
2L	13162851	2L_13162851_SNP [dm3] 2L_13162851_SNP [dm6]	T	C	5.663e^-5	0.738	SYNONYMOUS_CODING CG5204 DOWNSTREAM DnaJ-H	TF binding site mE1_TFBS_cad
X	19517064	X_19517064_SNP [dm3] X_19623031_SNP [dm6]	G	A	5.711e^-5	0.739	UTR_5_PRIME NAA20 UPSTREAM MKP-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16171350	3L_16171350_SNP [dm3] 3L_16178250_SNP [dm6]	G	C	5.868e^-5	0.747	UPSTREAM CR45755 DOWNSTREAM CR45754 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7358919	2L_7358919_SNP [dm3] 2L_7358919_SNP [dm6]	G	A	5.899e^-5	0.747	INTERGENIC
X	7071334	X_7071334_SNP [dm3] X_7177301_SNP [dm6]	G	A	5.920e^-5	0.747	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1582850	2R_1582850_SNP [dm3] 2R_5695345_SNP [dm6]	A	G	5.935e^-5	0.747	INTERGENIC
2R	14200403	2R_14200403_SNP [dm3] 2R_18312898_SNP [dm6]	G	A	5.989e^-5	0.749	DOWNSTREAM Tango8 INTRON sbb
3L	14435448	3L_14435448_SNP [dm3] 3L_14442348_SNP [dm6]	A	C	6.051e^-5	0.752	INTRON bbg
2L	3345752	2L_3345752_SNP [dm3] 2L_3345752_SNP [dm6]	A	G	6.167e^-5	0.754	INTRON E23	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	4458474	2L_4458474_SNP [dm3] 2L_4458474_SNP [dm6]	A	T	6.192e^-5	0.754	UPSTREAM snoRNA:Me18S-C1831 & 1 other DOWNSTREAM mRpL27 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14432737	3L_14432737_SNP [dm3] 3L_14439637_SNP [dm6]	T	C	6.216e^-5	0.754	INTRON bbg
X	5721268	X_5721268_SNP [dm3] X_5827235_SNP [dm6]	C	A	6.347e^-5	0.754	INTRON CG15765
X	7071374	X_7071374_DEL [dm3] X_7177341_DEL [dm6]	TTC	T	6.479e^-5	0.754	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9308752	3R_9308752_SNP [dm3] 3R_13483030_SNP [dm6]	C	A	6.515e^-5	0.754	INTERGENIC
3R	22982486	3R_22982486_SNP [dm3] 3R_27156764_SNP [dm6]	T	A	6.536e^-5	0.754	UTR_3_PRIME Men-b DOWNSTREAM Men-b INTRON Men-b
3R	3362615	3R_3362615_SNP [dm3] 3R_7536893_SNP [dm6]	C	T	6.583e^-5	0.754	SYNONYMOUS_CODING alpha-Est4 UPSTREAM alpha-Est5
X	19855974	X_19855974_SNP [dm3] X_19961941_SNP [dm6]	A	G	6.587e^-5	0.754	INTRON Nep3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8018080	3L_8018080_SNP [dm3] 3L_8024980_SNP [dm6]	A	G	6.603e^-5	0.754	INTRON nmo	TF binding site BDTNP1_TFBS_dl
3R	26345783	3R_26345783_SNP [dm3] 3R_30520061_SNP [dm6]	G	C	6.646e^-5	0.754	INTRON jdp
2R	8449659	2R_8449659_SNP [dm3] 2R_12562154_SNP [dm6]	G	C	6.663e^-5	0.754	UTR_5_PRIME CG30056 INTRON fra
2L	18439244	2L_18439244_SNP [dm3] 2L_18439244_SNP [dm6]	G	A	6.680e^-5	0.754	INTERGENIC
2L	12328024	2L_12328024_SNP [dm3] 2L_12328024_SNP [dm6]	G	A	6.701e^-5	0.754	INTERGENIC
3R	3368506	3R_3368506_SNP [dm3] 3R_7542784_SNP [dm6]	A	C	6.739e^-5	0.754	UTR_5_PRIME alpha-Est2
3R	7283582	3R_7283582_SNP [dm3] 3R_11457860_SNP [dm6]	A	T	6.744e^-5	0.754	UTR_5_PRIME PGRP-LB INTRON CG17230 & 1 other
2R	14200385	2R_14200385_SNP [dm3] 2R_18312880_SNP [dm6]	G	C	6.946e^-5	0.754	DOWNSTREAM Tango8 INTRON sbb
2L	18439236	2L_18439236_SNP [dm3] 2L_18439236_SNP [dm6]	C	G	6.974e^-5	0.754	INTERGENIC
2L	18439241	2L_18439241_SNP [dm3] 2L_18439241_SNP [dm6]	C	A	6.974e^-5	0.754	INTERGENIC
3L	6554215	3L_6554215_SNP [dm3] 3L_6561115_SNP [dm6]	T	A	6.991e^-5	0.754	INTRON CG18769
3L	1024748	3L_1024748_SNP [dm3] 3L_1024748_SNP [dm6]	A	G	6.993e^-5	0.754	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	25197332	3R_25197332_SNP [dm3] 3R_29371610_SNP [dm6]	T	C	7.003e^-5	0.754	INTERGENIC
2R	6213142	2R_6213142_SNP [dm3] 2R_10325637_SNP [dm6]	C	A	7.056e^-5	0.754	INTRON CG42732
X	2367202	X_2367202_SNP [dm3] X_2473169_SNP [dm6]	A	T	7.063e^-5	0.754	SPLICE_SITE_REGION trol INTRON trol	TF binding site mE1_TFBS_HSA
X	5538243	X_5538243_SNP [dm3] X_5644210_SNP [dm6]	A	G	7.078e^-5	0.754	INTRON CG42492
2L	11594414	2L_11594414_SNP [dm3] 2L_11594414_SNP [dm6]	T	A	7.238e^-5	0.767	INTRON kek2
3R	21899141	3R_21899141_INS [dm3] 3R_26073419_INS [dm6]	A	AT	7.292e^-5	0.767	INTERGENIC
2R	13046802	2R_13046802_SNP [dm3] 2R_17159297_SNP [dm6]	C	T	7.353e^-5	0.767	UPSTREAM CG17287 & 1 other DOWNSTREAM CG30457 INTERGENIC
3R	9679973	3R_9679973_SNP [dm3] 3R_13854251_SNP [dm6]	A	C	7.361e^-5	0.767	DOWNSTREAM CG14362 INTERGENIC
3R	25569735	3R_25569735_SNP [dm3] 3R_29744013_SNP [dm6]	A	G	7.444e^-5	0.771	SYNONYMOUS_CODING CG7609	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	3351885	3R_3351885_SNP [dm3] 3R_7526163_SNP [dm6]	T	C	7.610e^-5	0.782	UPSTREAM alpha-Est4aPsi INTRON alpha-Est6
3R	9159135	3R_9159135_SNP [dm3] 3R_13333413_SNP [dm6]	T	C	7.642e^-5	0.782	INTRON PK2-R2
3R	8679055	3R_8679055_SNP [dm3] 3R_12853333_SNP [dm6]	C	T	7.726e^-5	0.782	INTERGENIC
3R	25572588	3R_25572588_SNP [dm3] 3R_29746866_SNP [dm6]	G	A	7.741e^-5	0.782	SYNONYMOUS_CODING IntS11 DOWNSTREAM ATPsyn-gamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	21187692	3L_21187692_SNP [dm3] 3L_21194592_SNP [dm6]	G	A	7.782e^-5	0.782	DOWNSTREAM park INTERGENIC	TF binding site mE1_TFBS_cad
3R	9308761	3R_9308761_SNP [dm3] 3R_13483039_SNP [dm6]	C	G	7.795e^-5	0.782	INTERGENIC
X	2821095	X_2821095_SNP [dm3] X_2927062_SNP [dm6]	A	G	7.920e^-5	0.782	INTRON kirre & 1 other
3R	8679049	3R_8679049_SNP [dm3] 3R_12853327_SNP [dm6]	A	T	7.982e^-5	0.782	INTERGENIC
3R	22230790	3R_22230790_SNP [dm3] 3R_26405068_SNP [dm6]	G	T	8.007e^-5	0.782	INTERGENIC
3L	15968356	3L_15968356_INS [dm3] 3L_15975256_INS [dm6]	T	TT	8.039e^-5	0.782	SPLICE_SITE_REGION brm UPSTREAM CG17026 INTRON brm	TF binding site mE1_TFBS_HSA
3L	18980782	3L_18980782_SNP [dm3] 3L_18987682_SNP [dm6]	C	T	8.090e^-5	0.782	SYNONYMOUS_CODING CG11619
2L	10928294	2L_10928294_SNP [dm3] 2L_10928294_SNP [dm6]	T	A	8.095e^-5	0.782	INTRON dpr2
3R	20127234	3R_20127234_SNP [dm3] 3R_24301512_SNP [dm6]	A	C	8.112e^-5	0.782	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22982205	3R_22982205_SNP [dm3] 3R_27156483_SNP [dm6]	C	A	8.161e^-5	0.782	UTR_3_PRIME Men-b DOWNSTREAM Men-b INTRON Men-b
3R	4971305	3R_4971305_SNP [dm3] 3R_9145583_SNP [dm6]	A	T	8.199e^-5	0.782	INTRON pum	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16428836	2L_16428836_SNP [dm3] 2L_16428836_SNP [dm6]	A	G	8.230e^-5	0.782	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	476743	3L_476743_SNP [dm3] 3L_476743_SNP [dm6]	G	A	8.260e^-5	0.782	INTRON klar
2R	19823983	2R_19823983_SNP [dm3] 2R_23936460_SNP [dm6]	A	T	8.335e^-5	0.783	UPSTREAM Ca-P60A DOWNSTREAM CG3735 INTERGENIC
2R	9774612	2R_9774612_SNP [dm3] 2R_13887107_SNP [dm6]	G	T	8.345e^-5	0.783	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
2L	18302593	2L_18302593_SNP [dm3] 2L_18302593_SNP [dm6]	A	G	8.500e^-5	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	18302594	2L_18302594_SNP [dm3] 2L_18302594_SNP [dm6]	T	C	8.500e^-5	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	12835291	3L_12835291_SNP [dm3] 3L_12842191_SNP [dm6]	G	A	8.639e^-5	0.797	INTRON CG10960	TF binding site mE1_TFBS_zfh1
2L	16428842	2L_16428842_SNP [dm3] 2L_16428842_SNP [dm6]	G	A	8.679e^-5	0.797	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19981343	2R_19981343_SNP [dm3] 2R_24093820_SNP [dm6]	C	T	8.706e^-5	0.797	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad
X	14957581	X_14957581_SNP [dm3] X_15063548_SNP [dm6]	A	C	8.840e^-5	0.799	UPSTREAM CG5548 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	18859821	2L_18859821_SNP [dm3] 2L_18859821_SNP [dm6]	T	C	8.841e^-5	0.799	UTR_3_PRIME tup UPSTREAM mRpL13 & 1 other DOWNSTREAM tup	TF binding site mE1_TFBS_bab1
3R	18333508	3R_18333508_SNP [dm3] 3R_22507786_SNP [dm6]	C	G	8.933e^-5	0.799	INTRON Octbeta1R
X	7071371	X_7071371_SNP [dm3] X_7177338_SNP [dm6]	T	C	8.977e^-5	0.799	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1702827	3L_1702827_SNP [dm3] 3L_1702827_SNP [dm6]	T	A	8.984e^-5	0.799	UPSTREAM CG13931 INTRON CG7991
X	17623938	X_17623938_SNP [dm3] X_17729905_SNP [dm6]	C	T	9.004e^-5	0.799	INTRON CG42684
2L	1717309	2L_1717309_SNP [dm3] 2L_1717309_SNP [dm6]	T	C	9.087e^-5	0.799	INTRON Rim2
3R	8670269	3R_8670269_SNP [dm3] 3R_12844547_SNP [dm6]	G	A	9.091e^-5	0.799	INTRON beat-Va
3L	3670628	3L_3670628_SNP [dm3] 3L_3670628_SNP [dm6]	C	T	9.146e^-5	0.799	INTERGENIC
3R	7285343	3R_7285343_SNP [dm3] 3R_11459621_SNP [dm6]	A	C	9.154e^-5	0.799	INTRON CG17230 & 1 other
2L	10833214	2L_10833214_SNP [dm3] 2L_10833214_SNP [dm6]	T	C	9.209e^-5	0.8	INTRON Nos
2L	16428852	2L_16428852_SNP [dm3] 2L_16428852_SNP [dm6]	A	G	9.322e^-5	0.802	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	20151822	X_20151822_SNP [dm3] X_20280795_SNP [dm6]	G	T	9.323e^-5	0.802	INTERGENIC
2R	19109717	2R_19109717_SNP [dm3] 2R_23222194_SNP [dm6]	C	A	9.482e^-5	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12520229	3L_12520229_SNP [dm3] 3L_12527129_SNP [dm6]	C	T	9.514e^-5	0.802	UPSTREAM eIF-2beta DOWNSTREAM nst INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16428856	2L_16428856_SNP [dm3] 2L_16428856_SNP [dm6]	A	T	9.585e^-5	0.802	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	2607510	X_2607510_SNP [dm3] X_2713477_SNP [dm6]	G	T	9.680e^-5	0.802	UPSTREAM CG2694 INTRON CG2685	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9098112	3R_9098112_SNP [dm3] 3R_13272390_SNP [dm6]	C	T	9.691e^-5	0.802	UPSTREAM CG8449 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7071342	X_7071342_SNP [dm3] X_7177309_SNP [dm6]	T	C	9.699e^-5	0.802	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5721267	X_5721267_SNP [dm3] X_5827234_SNP [dm6]	A	G	9.708e^-5	0.802	INTRON CG15765
3L	16186011	3L_16186011_SNP [dm3] 3L_16192911_SNP [dm6]	C	T	9.800e^-5	0.802	INTERGENIC
X	9188681	X_9188681_SNP [dm3] X_9294648_SNP [dm6]	G	T	9.849e^-5	0.802	INTRON lz	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25145412	3R_25145412_SNP [dm3] 3R_29319690_SNP [dm6]	T	C	9.953e^-5	0.802	UPSTREAM Cnx99A INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl
X	7071387	X_7071387_SNP [dm3] X_7177354_SNP [dm6]	C	T	1.010e^-4	0.802	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18870600	X_18870600_SNP [dm3] X_18976567_SNP [dm6]	T	G	1.020e^-4	0.802	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	15070778	2L_15070778_SNP [dm3] 2L_15070778_SNP [dm6]	G	C	1.035e^-4	0.802	NON_SYNONYMOUS_CODING vas UPSTREAM vig INTRON vas	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	10938604	2L_10938604_SNP [dm3] 2L_10938604_SNP [dm6]	T	A	1.046e^-4	0.802	DOWNSTREAM CG14072 INTRON dpr2	TF binding site mE1_TFBS_HSA
X	19995044	X_19995044_SNP [dm3] X_20101011_SNP [dm6]	A	G	1.055e^-4	0.802	INTERGENIC	transposable element FlyBase
3R	10679742	3R_10679742_SNP [dm3] 3R_14854020_SNP [dm6]	C	T	1.057e^-4	0.802	UPSTREAM btsz INTRON btsz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13130824	3L_13130824_SNP [dm3] 3L_13137724_SNP [dm6]	T	C	1.059e^-4	0.802	DOWNSTREAM CG33262 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20586692	3R_20586692_SNP [dm3] 3R_24760970_SNP [dm6]	G	C	1.063e^-4	0.802	UTR_3_PRIME AstA DOWNSTREAM asp	TF binding site mE1_TFBS_cad
X	2785038	X_2785038_SNP [dm3] X_2891005_SNP [dm6]	G	C	1.067e^-4	0.802	INTRON kirre & 1 other	TF binding site mE1_TFBS_chinmo
2L	4338562	2L_4338562_SNP [dm3] 2L_4338562_SNP [dm6]	G	A	1.067e^-4	0.802	UPSTREAM Atet INTRON Atet
3R	9274440	3R_9274440_SNP [dm3] 3R_13448718_SNP [dm6]	T	G	1.068e^-4	0.802	INTERGENIC
3L	9559308	3L_9559308_SNP [dm3] 3L_9566208_SNP [dm6]	G	A	1.070e^-4	0.802	INTRON CG42673
2L	18284762	2L_18284762_SNP [dm3] 2L_18284762_SNP [dm6]	C	T	1.073e^-4	0.802	DOWNSTREAM CG31787 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19112746	2R_19112746_SNP [dm3] 2R_23225223_SNP [dm6]	A	T	1.074e^-4	0.802	INTERGENIC
2L	9780790	2L_9780790_DEL [dm3] 2L_9780790_DEL [dm6]	GTGGCCGTTT	G	1.076e^-4	0.802	INTERGENIC
2R	18449000	2R_18449000_SNP [dm3] 2R_22561495_SNP [dm6]	C	T	1.078e^-4	0.802	UPSTREAM CG11362 INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn
2R	4875268	2R_4875268_SNP [dm3] 2R_8987763_SNP [dm6]	G	C	1.088e^-4	0.802	INTERGENIC
3R	12763900	3R_12763900_SNP [dm3] 3R_16938178_SNP [dm6]	T	C	1.093e^-4	0.802	INTRON Abd-B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16456458	2R_16456458_SNP [dm3] 2R_20568953_SNP [dm6]	G	C	1.094e^-4	0.802	INTRON qsm
3L	1714780	3L_1714780_SNP [dm3] 3L_1714780_SNP [dm6]	C	A	1.096e^-4	0.802	SYNONYMOUS_CODING CG7991 DOWNSTREAM drpr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14704045	2R_14704045_SNP [dm3] 2R_18816540_SNP [dm6]	G	A	1.104e^-4	0.802	UPSTREAM CG15096 DOWNSTREAM CR43418 INTERGENIC
2R	17296043	2R_17296043_SNP [dm3] 2R_21408538_SNP [dm6]	A	T	1.116e^-4	0.802	INTRON Sdc
3R	13454494	3R_13454494_SNP [dm3] 3R_17628772_SNP [dm6]	C	T	1.120e^-4	0.802	SYNONYMOUS_CODING CG14325 DOWNSTREAM tRNA:V4:90C
X	18692963	X_18692963_SNP [dm3] X_18798930_SNP [dm6]	C	G	1.133e^-4	0.802	INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17277601	2R_17277601_SNP [dm3] 2R_21390096_SNP [dm6]	C	T	1.134e^-4	0.802	SYNONYMOUS_CODING Acox57D-d DOWNSTREAM Acox57D-p
2R	16456643	2R_16456643_SNP [dm3] 2R_20569138_SNP [dm6]	A	C	1.138e^-4	0.802	INTRON qsm
2R	19619145	2R_19619145_SNP [dm3] 2R_23731622_SNP [dm6]	C	G	1.138e^-4	0.802	INTRON Sesn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	9308763	3R_9308763_SNP [dm3] 3R_13483041_SNP [dm6]	T	A	1.146e^-4	0.802	INTERGENIC
3R	17085141	3R_17085141_SNP [dm3] 3R_21259419_SNP [dm6]	G	C	1.147e^-4	0.802	INTRON ETHR	TF binding site mE1_TFBS_cad
2L	10928305	2L_10928305_SNP [dm3] 2L_10928305_SNP [dm6]	A	G	1.160e^-4	0.802	INTRON dpr2
X	15350704	X_15350704_SNP [dm3] X_15456671_SNP [dm6]	A	G	1.163e^-4	0.802	SYNONYMOUS_CODING shtd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25106441	3R_25106441_SNP [dm3] 3R_29280719_SNP [dm6]	G	A	1.165e^-4	0.802	INTERGENIC	regulatory region REDfly_CRMs
3L	18980638	3L_18980638_SNP [dm3] 3L_18987538_SNP [dm6]	G	C	1.172e^-4	0.802	SYNONYMOUS_CODING CG11619	TF binding site mE1_TFBS_sens
3L	15974829	3L_15974829_DEL [dm3] 3L_15981729_DEL [dm6]	TTTCTATACTTATTCACAAA...	T	1.173e^-4	0.802	UTR_3_PRIME CG17027 INTRON brm
2R	17296045	2R_17296045_SNP [dm3] 2R_21408540_SNP [dm6]	C	G	1.175e^-4	0.802	INTRON Sdc
X	19501079	X_19501079_SNP [dm3] X_19607046_SNP [dm6]	A	G	1.175e^-4	0.802	INTRON CG14207	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc
3R	16853866	3R_16853866_SNP [dm3] 3R_21028144_SNP [dm6]	G	C	1.176e^-4	0.802	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad
X	7071237	X_7071237_SNP [dm3] X_7177204_SNP [dm6]	C	T	1.180e^-4	0.802	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7952237	2R_7952237_SNP [dm3] 2R_12064732_SNP [dm6]	G	A	1.182e^-4	0.802	UTR_3_PRIME CG8888
3L	7897041	3L_7897041_SNP [dm3] 3L_7903941_SNP [dm6]	A	G	1.184e^-4	0.802	UPSTREAM pbl INTRON pbl	TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
X	7071388	X_7071388_INS [dm3] X_7177355_INS [dm6]	T	TT	1.184e^-4	0.802	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18149572	X_18149572_SNP [dm3] X_18255539_SNP [dm6]	G	A	1.198e^-4	0.802	INTERGENIC
2R	19178819	2R_19178819_SNP [dm3] 2R_23291296_SNP [dm6]	G	C	1.198e^-4	0.802	EXON CR44783
3R	17503522	3R_17503522_SNP [dm3] 3R_21677800_SNP [dm6]	G	A	1.207e^-4	0.802	INTRON CG31176
2R	9267786	2R_9267786_SNP [dm3] 2R_13380281_SNP [dm6]	A	C	1.208e^-4	0.802	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7532526	2R_7532526_SNP [dm3] 2R_11645021_SNP [dm6]	T	A	1.212e^-4	0.802	INTRON CG9003	TF binding site BDTNP1_TFBS_dl
3L	14390234	3L_14390234_SNP [dm3] 3L_14397134_SNP [dm6]	T	C	1.213e^-4	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16456457	2R_16456457_SNP [dm3] 2R_20568952_SNP [dm6]	C	T	1.214e^-4	0.802	INTRON qsm
X	15288300	X_15288300_SNP [dm3] X_15394267_SNP [dm6]	A	G	1.224e^-4	0.802	SYNONYMOUS_CODING Cngl	TF binding site mE1_TFBS_chinmo
3R	8682229	3R_8682229_SNP [dm3] 3R_12856507_SNP [dm6]	C	T	1.238e^-4	0.802	SYNONYMOUS_CODING CG10126
X	10921856	X_10921856_SNP [dm3] X_11027823_SNP [dm6]	C	T	1.239e^-4	0.802	INTRON CG42339
3R	8667481	3R_8667481_SNP [dm3] 3R_12841759_SNP [dm6]	G	T	1.239e^-4	0.802	UTR_3_PRIME beat-Va DOWNSTREAM beat-Va
X	7071382	X_7071382_SNP [dm3] X_7177349_SNP [dm6]	A	T	1.247e^-4	0.802	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15216293	3R_15216293_DEL [dm3] 3R_19390571_DEL [dm6]	CA	G	1.258e^-4	0.802	DOWNSTREAM CG3734 INTRON Ino80 & 1 other
2R	19942279	2R_19942279_SNP [dm3] 2R_24054756_SNP [dm6]	C	T	1.263e^-4	0.802	SPLICE_SITE_REGION ppk29 UPSTREAM CG13563 INTRON ppk29
3L	14432702	3L_14432702_SNP [dm3] 3L_14439602_SNP [dm6]	A	G	1.263e^-4	0.802	INTRON bbg
3R	24783148	3R_24783148_SNP [dm3] 3R_28957426_SNP [dm6]	T	A	1.271e^-4	0.802	INTRON CG14521
3L	6765765	3L_6765765_SNP [dm3] 3L_6772665_SNP [dm6]	C	T	1.282e^-4	0.802	INTERGENIC
X	7071337	X_7071337_SNP [dm3] X_7177304_SNP [dm6]	A	C	1.304e^-4	0.802	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5010532	3L_5010532_SNP [dm3] 3L_5010532_SNP [dm6]	C	T	1.305e^-4	0.802	DOWNSTREAM CG12027 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10823689	2L_10823689_SNP [dm3] 2L_10823689_SNP [dm6]	A	C	1.306e^-4	0.802	INTRON Nos
2L	10823691	2L_10823691_SNP [dm3] 2L_10823691_SNP [dm6]	C	T	1.306e^-4	0.802	INTRON Nos
3R	8667323	3R_8667323_SNP [dm3] 3R_12841601_SNP [dm6]	C	A	1.307e^-4	0.802	UTR_3_PRIME beat-Va DOWNSTREAM beat-Va
X	15350824	X_15350824_SNP [dm3] X_15456791_SNP [dm6]	G	T	1.311e^-4	0.802	SYNONYMOUS_CODING shtd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9128411	3R_9128411_SNP [dm3] 3R_13302689_SNP [dm6]	C	T	1.312e^-4	0.802	START_GAINED CG32473 UTR_5_PRIME CG32473 UPSTREAM CG43208 DOWNSTREAM CG8774
3L	16171290	3L_16171290_SNP [dm3] 3L_16178190_SNP [dm6]	C	T	1.312e^-4	0.802	UPSTREAM CR45755 DOWNSTREAM CR45754 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25572600	3R_25572600_SNP [dm3] 3R_29746878_SNP [dm6]	G	C	1.315e^-4	0.802	SYNONYMOUS_CODING IntS11 DOWNSTREAM ATPsyn-gamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19856257	X_19856257_SNP [dm3] X_19962224_SNP [dm6]	A	G	1.323e^-4	0.802	UPSTREAM Nep3 INTRON Nep3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11872897	2L_11872897_SNP [dm3] 2L_11872897_SNP [dm6]	C	G	1.324e^-4	0.802	INTRON Pde1c
3L	14424539	3L_14424539_SNP [dm3] 3L_14431439_SNP [dm6]	C	T	1.328e^-4	0.802	INTRON bbg
2L	10660350	2L_10660350_SNP [dm3] 2L_10660350_SNP [dm6]	C	G	1.330e^-4	0.802	INTERGENIC
3R	16853815	3R_16853815_SNP [dm3] 3R_21028093_SNP [dm6]	A	G	1.334e^-4	0.802	INTRON Dhc93AB	TF binding site mE1_TFBS_cad
3R	7283604	3R_7283604_SNP [dm3] 3R_11457882_SNP [dm6]	A	G	1.334e^-4	0.802	UTR_5_PRIME PGRP-LB INTRON CG17230 & 1 other
X	7071400	X_7071400_SNP [dm3] X_7177367_SNP [dm6]	T	C	1.339e^-4	0.802	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17003308	3R_17003308_INS [dm3] 3R_21177586_INS [dm6]	A	AT	1.346e^-4	0.802	INTRON SNF4Agamma
3L	13116566	3L_13116566_SNP [dm3] 3L_13123466_SNP [dm6]	T	C	1.355e^-4	0.802	INTERGENIC
3L	13486376	3L_13486376_SNP [dm3] 3L_13493276_SNP [dm6]	T	G	1.358e^-4	0.802	INTRON Tgi
3R	9068911	3R_9068911_DEL [dm3] 3R_13243189_DEL [dm6]	TGCACC	G	1.360e^-4	0.802	INTRON Ace
2R	19573440	2R_19573440_SNP [dm3] 2R_23685917_SNP [dm6]	G	A	1.361e^-4	0.802	UPSTREAM l_2_efl INTRON St3
3R	9295726	3R_9295726_SNP [dm3] 3R_13470004_SNP [dm6]	C	T	1.364e^-4	0.802	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14432735	3L_14432735_SNP [dm3] 3L_14439635_SNP [dm6]	C	T	1.364e^-4	0.802	INTRON bbg
3R	22982336	3R_22982336_SNP [dm3] 3R_27156614_SNP [dm6]	A	G	1.369e^-4	0.802	UTR_3_PRIME Men-b DOWNSTREAM Men-b INTRON Men-b
2R	4005880	2R_4005880_SNP [dm3] 2R_8118375_SNP [dm6]	C	G	1.370e^-4	0.802	INTRON Asap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24209945	3R_24209945_SNP [dm3] 3R_28384223_SNP [dm6]	G	T	1.375e^-4	0.802	INTERGENIC
X	2607497	X_2607497_SNP [dm3] X_2713464_SNP [dm6]	C	G	1.379e^-4	0.802	UPSTREAM CG2694 INTRON CG2685	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10921437	X_10921437_SNP [dm3] X_11027404_SNP [dm6]	C	T	1.384e^-4	0.802	INTRON CG42339
2L	18309718	2L_18309718_SNP [dm3] 2L_18309718_SNP [dm6]	A	G	1.388e^-4	0.802	UPSTREAM CR44695 & 1 other EXON CR44694
2R	11872380	2R_11872380_SNP [dm3] 2R_15984875_SNP [dm6]	C	T	1.393e^-4	0.802	SPLICE_SITE_REGION Strn-Mlck INTRON Strn-Mlck
3L	14388264	3L_14388264_SNP [dm3] 3L_14395164_SNP [dm6]	G	A	1.394e^-4	0.802	INTERGENIC
3L	7614017	3L_7614017_SNP [dm3] 3L_7620917_SNP [dm6]	C	T	1.397e^-4	0.802	INTRON CG33275	TF binding site BDTNP1_TFBS_z
3R	25348002	3R_25348002_SNP [dm3] 3R_29522280_SNP [dm6]	C	G	1.402e^-4	0.802	INTERGENIC
3R	14786276	3R_14786276_SNP [dm3] 3R_18960554_SNP [dm6]	T	C	1.402e^-4	0.802	INTRON CG42613 & 1 other
X	19856210	X_19856210_SNP [dm3] X_19962177_SNP [dm6]	T	A	1.404e^-4	0.802	UPSTREAM Nep3 INTRON Nep3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7965458	3L_7965458_SNP [dm3] 3L_7972358_SNP [dm6]	C	G	1.409e^-4	0.802	UTR_3_PRIME RNaseX25 DOWNSTREAM CG8042
3R	9153476	3R_9153476_SNP [dm3] 3R_13327754_SNP [dm6]	T	C	1.420e^-4	0.802	INTERGENIC
3R	8684591	3R_8684591_SNP [dm3] 3R_12858869_SNP [dm6]	C	T	1.421e^-4	0.802	INTRON CG10126
2R	5012633	2R_5012633_SNP [dm3] 2R_9125128_SNP [dm6]	G	C	1.422e^-4	0.802	SYNONYMOUS_CODING CG18659 UTR_3_PRIME CG18659 INTRON CG18659	TF binding site mE1_TFBS_chinmo
2L	11588361	2L_11588361_SNP [dm3] 2L_11588361_SNP [dm6]	T	G	1.424e^-4	0.802	UPSTREAM CR44496 INTRON kek2
3L	1911001	3L_1911001_SNP [dm3] 3L_1911001_SNP [dm6]	G	A	1.431e^-4	0.802	UPSTREAM CG1887 INTERGENIC
3L	11431770	3L_11431770_SNP [dm3] 3L_11438670_SNP [dm6]	A	T	1.434e^-4	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	11897041	3L_11897041_SNP [dm3] 3L_11903941_SNP [dm6]	G	C	1.437e^-4	0.802	INTRON CG44837
X	5721290	X_5721290_SNP [dm3] X_5827257_SNP [dm6]	G	A	1.439e^-4	0.802	INTRON CG15765
X	4539335	X_4539335_SNP [dm3] X_4645302_SNP [dm6]	T	C	1.458e^-4	0.802	UTR_3_PRIME HLH4C UPSTREAM CG3062	TF binding site mE1_TFBS_chinmo
2L	6136314	2L_6136314_SNP [dm3] 2L_6136314_SNP [dm6]	T	C	1.462e^-4	0.802	INTERGENIC
3R	18267502	3R_18267502_SNP [dm3] 3R_22441780_SNP [dm6]	C	T	1.465e^-4	0.802	SYNONYMOUS_CODING CG12499
3R	18267511	3R_18267511_SNP [dm3] 3R_22441789_SNP [dm6]	C	T	1.465e^-4	0.802	SYNONYMOUS_CODING CG12499
3R	24209878	3R_24209878_SNP [dm3] 3R_28384156_SNP [dm6]	A	G	1.465e^-4	0.802	INTERGENIC
2L	9783739	2L_9783739_SNP [dm3] 2L_9783739_SNP [dm6]	C	T	1.469e^-4	0.802	INTRON IP3K1	TF binding site mE1_TFBS_sens
3R	9111060	3R_9111060_SNP [dm3] 3R_13285338_SNP [dm6]	G	A	1.470e^-4	0.802	SYNONYMOUS_CODING CG15888 DOWNSTREAM CG8630
3R	8670343	3R_8670343_SNP [dm3] 3R_12844621_SNP [dm6]	G	A	1.472e^-4	0.802	INTRON beat-Va
3R	21899134	3R_21899134_INS [dm3] 3R_26073412_INS [dm6]	A	AGGTTTAT	1.472e^-4	0.802	INTERGENIC
3R	25458160	3R_25458160_SNP [dm3] 3R_29632438_SNP [dm6]	A	G	1.477e^-4	0.802	SYNONYMOUS_CODING Dop1R2 UTR_3_PRIME Dop1R2	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18870465	X_18870465_SNP [dm3] X_18976432_SNP [dm6]	G	A	1.479e^-4	0.802	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	14388255	3L_14388255_SNP [dm3] 3L_14395155_SNP [dm6]	C	T	1.480e^-4	0.802	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	14388257	3L_14388257_SNP [dm3] 3L_14395157_SNP [dm6]	G	C	1.480e^-4	0.802	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	14388260	3L_14388260_DEL [dm3] 3L_14395160_DEL [dm6]	CT	A	1.480e^-4	0.802	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	14388263	3L_14388263_SNP [dm3] 3L_14395163_SNP [dm6]	A	T	1.480e^-4	0.802	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5010797	3L_5010797_SNP [dm3] 3L_5010797_SNP [dm6]	A	G	1.481e^-4	0.802	DOWNSTREAM CG12027 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20224246	X_20224246_SNP [dm3] X_20353219_SNP [dm6]	A	C	1.485e^-4	0.802	INTERGENIC
2L	10987152	2L_10987152_SNP [dm3] 2L_10987152_SNP [dm6]	T	C	1.488e^-4	0.802	UPSTREAM CG12253 INTRON piwi
3R	24383920	3R_24383920_SNP [dm3] 3R_28558198_SNP [dm6]	A	T	1.494e^-4	0.802	INTERGENIC
3L	7904743	3L_7904743_SNP [dm3] 3L_7911643_SNP [dm6]	G	A	1.496e^-4	0.802	UTR_5_PRIME pbl UPSTREAM CG8281	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	15351182	X_15351182_SNP [dm3] X_15457149_SNP [dm6]	G	A	1.510e^-4	0.807	SYNONYMOUS_CODING shtd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11973250	2L_11973250_SNP [dm3] 2L_11973250_SNP [dm6]	G	A	1.514e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2791955	3L_2791955_SNP [dm3] 3L_2791955_SNP [dm6]	C	G	1.523e^-4	0.808	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18397737	3R_18397737_SNP [dm3] 3R_22572015_SNP [dm6]	A	T	1.529e^-4	0.808	INTRON CG33110
2R	18140810	2R_18140810_SNP [dm3] 2R_22253305_SNP [dm6]	A	G	1.531e^-4	0.808	INTRON dve	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3L	1840816	3L_1840816_SNP [dm3] 3L_1840816_SNP [dm6]	A	G	1.534e^-4	0.808	SYNONYMOUS_CODING Cpr62Bc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18581603	2L_18581603_DEL [dm3] 2L_18581603_DEL [dm6]	GAA	C	1.550e^-4	0.811	INTRON Pde11	transposable element FlyBase
3R	9155621	3R_9155621_SNP [dm3] 3R_13329899_SNP [dm6]	G	T	1.556e^-4	0.811	SYNONYMOUS_CODING PK2-R2
X	18145143	X_18145143_SNP [dm3] X_18251110_SNP [dm6]	C	T	1.561e^-4	0.811	INTERGENIC
X	5358891	X_5358891_SNP [dm3] X_5464858_SNP [dm6]	G	C	1.562e^-4	0.811	UTR_5_PRIME SPR INTRON SPR
2R	10934477	2R_10934477_DEL [dm3] 2R_15046972_DEL [dm6]	ATGTA	A	1.567e^-4	0.811	INTERGENIC
3R	12199840	3R_12199840_SNP [dm3] 3R_16374118_SNP [dm6]	T	A	1.570e^-4	0.811	DOWNSTREAM ss INTERGENIC
X	15270369	X_15270369_SNP [dm3] X_15376336_SNP [dm6]	G	T	1.576e^-4	0.811	INTRON acj6
3R	9311357	3R_9311357_SNP [dm3] 3R_13485635_SNP [dm6]	G	A	1.582e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15411842	2R_15411842_SNP [dm3] 2R_19524337_SNP [dm6]	A	C	1.589e^-4	0.811	UTR_3_PRIME sm
X	21892891	X_21892891_SNP [dm3] X_22491055_SNP [dm6]	G	A	1.593e^-4	0.811	UPSTREAM l_1_G0196 & 1 other INTRON l_1_G0196
2L	4856410	2L_4856410_SNP [dm3] 2L_4856410_SNP [dm6]	A	G	1.600e^-4	0.811	INTRON pog
2L	13169058	2L_13169058_SNP [dm3] 2L_13169058_SNP [dm6]	C	T	1.600e^-4	0.811	UTR_3_PRIME Sir2 DOWNSTREAM Sfmbt
2R	18966587	2R_18966587_SNP [dm3] 2R_23079064_SNP [dm6]	T	A	1.609e^-4	0.811	UPSTREAM Art7 DOWNSTREAM CG43659 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	10115907	3L_10115907_SNP [dm3] 3L_10122807_SNP [dm6]	G	A	1.612e^-4	0.811	INTRON dpr6
X	5883682	X_5883682_SNP [dm3] X_5989649_SNP [dm6]	T	C	1.613e^-4	0.811	UTR_5_PRIME CG5966 INTRON CG5966
3L	476587	3L_476587_SNP [dm3] 3L_476587_SNP [dm6]	G	A	1.616e^-4	0.811	INTRON klar
3R	13322783	3R_13322783_SNP [dm3] 3R_17497061_SNP [dm6]	T	G	1.616e^-4	0.811	INTRON Dscam3
3L	8329283	3L_8329283_SNP [dm3] 3L_8336183_SNP [dm6]	G	T	1.620e^-4	0.811	UPSTREAM Cpr66Cb INTERGENIC
3R	8670184	3R_8670184_SNP [dm3] 3R_12844462_SNP [dm6]	A	T	1.630e^-4	0.811	INTRON beat-Va
2R	3905681	2R_3905681_SNP [dm3] 2R_8018176_SNP [dm6]	C	T	1.631e^-4	0.811	UPSTREAM CR45267 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	19516546	X_19516546_SNP [dm3] X_19622513_SNP [dm6]	C	T	1.632e^-4	0.811	UPSTREAM MKP-4 INTRON NAA20	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8170467	2L_8170467_SNP [dm3] 2L_8170467_SNP [dm6]	T	C	1.634e^-4	0.811	INTRON Piezo
2R	18124031	2R_18124031_SNP [dm3] 2R_22236526_SNP [dm6]	G	C	1.652e^-4	0.817	EXON CR44755
3R	8574928	3R_8574928_SNP [dm3] 3R_12749206_SNP [dm6]	C	T	1.662e^-4	0.817	INTRON beat-Vc	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6100921	2L_6100921_SNP [dm3] 2L_6100921_SNP [dm6]	T	G	1.665e^-4	0.817	INTRON stai	TF binding site BDTNP1_TFBS_dl
3R	24031602	3R_24031602_SNP [dm3] 3R_28205880_SNP [dm6]	G	T	1.665e^-4	0.817	INTRON CG34354
2R	4866202	2R_4866202_SNP [dm3] 2R_8978697_SNP [dm6]	G	C	1.670e^-4	0.817	INTRON CG8213	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18735246	2R_18735246_SNP [dm3] 2R_22847723_SNP [dm6]	C	G	1.673e^-4	0.817	SYNONYMOUS_CODING CG3649 DOWNSTREAM CG13531	TF binding site mE1_TFBS_cad
3R	8679048	3R_8679048_SNP [dm3] 3R_12853326_SNP [dm6]	G	A	1.683e^-4	0.82	INTERGENIC
3R	9131555	3R_9131555_INS [dm3] 3R_13305833_INS [dm6]	G	GG	1.701e^-4	0.82	INTRON CG32473
3R	8667360	3R_8667360_SNP [dm3] 3R_12841638_SNP [dm6]	T	A	1.702e^-4	0.82	UTR_3_PRIME beat-Va DOWNSTREAM beat-Va
2L	16428835	2L_16428835_SNP [dm3] 2L_16428835_SNP [dm6]	T	C	1.713e^-4	0.82	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17829565	3L_17829565_SNP [dm3] 3L_17836465_SNP [dm6]	C	T	1.714e^-4	0.82	INTRON Grd
3R	18267546	3R_18267546_SNP [dm3] 3R_22441824_SNP [dm6]	G	A	1.716e^-4	0.82	SYNONYMOUS_CODING CG12499
X	16801608	X_16801608_SNP [dm3] X_16907575_SNP [dm6]	A	C	1.716e^-4	0.82	INTRON CR44754
3L	2788934	3L_2788934_SNP [dm3] 3L_2788934_SNP [dm6]	G	A	1.718e^-4	0.82	SYNONYMOUS_CODING CG43444	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	25349865	3R_25349865_INS [dm3] 3R_29524143_INS [dm6]	T	TA	1.742e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6259517	2L_6259517_DEL [dm3] 2L_6259517_DEL [dm6]	AAAAA	A	1.745e^-4	0.82	INTRON Ddr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10939720	2L_10939720_SNP [dm3] 2L_10939720_SNP [dm6]	A	C	1.748e^-4	0.82	INTRON dpr2
3L	3670619	3L_3670619_SNP [dm3] 3L_3670619_SNP [dm6]	G	A	1.751e^-4	0.82	INTERGENIC
3R	14178838	3R_14178838_SNP [dm3] 3R_18353116_SNP [dm6]	T	C	1.752e^-4	0.82	SYNONYMOUS_CODING CG15803	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5151996	2L_5151996_SNP [dm3] 2L_5151996_SNP [dm6]	A	T	1.752e^-4	0.82	INTRON Msp300	TF binding site mE1_TFBS_inv
2L	19383526	2L_19383526_SNP [dm3] 2L_19383526_SNP [dm6]	C	A	1.756e^-4	0.82	UTR_3_PRIME fon DOWNSTREAM CG17350
2R	8449642	2R_8449642_SNP [dm3] 2R_12562137_SNP [dm6]	C	A	1.760e^-4	0.82	UTR_5_PRIME CG30056 INTRON fra
3R	22898431	3R_22898431_SNP [dm3] 3R_27072709_SNP [dm6]	C	T	1.763e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12613919	X_12613919_SNP [dm3] X_12719886_SNP [dm6]	T	G	1.767e^-4	0.82	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10506850	3L_10506850_SNP [dm3] 3L_10513750_SNP [dm6]	G	A	1.768e^-4	0.82	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl
3R	24517166	3R_24517166_SNP [dm3] 3R_28691444_SNP [dm6]	A	T	1.773e^-4	0.82	INTRON CG9990
2L	10823709	2L_10823709_SNP [dm3] 2L_10823709_SNP [dm6]	A	T	1.781e^-4	0.82	INTRON Nos
2R	11876343	2R_11876343_DEL [dm3] 2R_15988838_DEL [dm6]	TCA	T	1.783e^-4	0.82	DOWNSTREAM CR45021 & 1 other INTRON Strn-Mlck
X	19516450	X_19516450_SNP [dm3] X_19622417_SNP [dm6]	T	A	1.784e^-4	0.82	SYNONYMOUS_CODING NAA20 UPSTREAM MKP-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12768707	3R_12768707_SNP [dm3] 3R_16942985_SNP [dm6]	C	T	1.785e^-4	0.82	INTRON Abd-B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4032100	2L_4032100_SNP [dm3] 2L_4032100_SNP [dm6]	G	T	1.799e^-4	0.823	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	8681298	3R_8681298_SNP [dm3] 3R_12855576_SNP [dm6]	A	T	1.800e^-4	0.823	UTR_3_PRIME CG10126
3R	14150208	3R_14150208_SNP [dm3] 3R_18324486_SNP [dm6]	A	G	1.808e^-4	0.824	INTRON CG31235
2R	15194859	2R_15194859_SNP [dm3] 2R_19307354_SNP [dm6]	C	A	1.813e^-4	0.824	UTR_3_PRIME CG7461 DOWNSTREAM EndoB & 1 other
2L	13477579	2L_13477579_SNP [dm3] 2L_13477579_SNP [dm6]	C	G	1.819e^-4	0.824	INTRON CG42784
2L	11818008	2L_11818008_SNP [dm3] 2L_11818008_SNP [dm6]	G	A	1.823e^-4	0.824	SYNONYMOUS_CODING Pde1c	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19855952	X_19855952_SNP [dm3] X_19961919_SNP [dm6]	A	G	1.832e^-4	0.824	INTRON Nep3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19485960	2R_19485960_SNP [dm3] 2R_23598437_SNP [dm6]	A	C	1.833e^-4	0.824	SYNONYMOUS_CODING apt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18417510	2R_18417510_SNP [dm3] 2R_22530005_SNP [dm6]	C	T	1.839e^-4	0.824	INTRON px
3R	24098530	3R_24098530_SNP [dm3] 3R_28272808_SNP [dm6]	C	G	1.839e^-4	0.824	INTERGENIC
3R	23183352	3R_23183352_SNP [dm3] 3R_27357630_SNP [dm6]	G	C	1.851e^-4	0.824	INTRON CG42534
3R	22230943	3R_22230943_SNP [dm3] 3R_26405221_SNP [dm6]	C	T	1.853e^-4	0.824	INTERGENIC
2L	13083770	2L_13083770_SNP [dm3] 2L_13083770_SNP [dm6]	C	T	1.853e^-4	0.824	INTERGENIC
2R	9766482	2R_9766482_SNP [dm3] 2R_13878977_SNP [dm6]	T	G	1.855e^-4	0.824	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7532529	2R_7532529_SNP [dm3] 2R_11645024_SNP [dm6]	C	T	1.860e^-4	0.825	INTRON CG9003	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11951274	2L_11951274_SNP [dm3] 2L_11951274_SNP [dm6]	A	T	1.869e^-4	0.825	DOWNSTREAM CR43314 INTERGENIC
2L	10977709	2L_10977709_SNP [dm3] 2L_10977709_SNP [dm6]	A	T	1.876e^-4	0.825	INTRON SCAR	TF binding site BDTNP1_TFBS_prd
3L	15360109	3L_15360109_SNP [dm3] 3L_15367009_SNP [dm6]	C	T	1.876e^-4	0.825	INTERGENIC
2R	17939649	2R_17939649_SNP [dm3] 2R_22052144_SNP [dm6]	C	T	1.879e^-4	0.825	INTERGENIC
X	5039102	X_5039102_SNP [dm3] X_5145069_SNP [dm6]	A	G	1.882e^-4	0.825	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
2R	19485978	2R_19485978_SNP [dm3] 2R_23598455_SNP [dm6]	A	G	1.886e^-4	0.825	SYNONYMOUS_CODING apt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17766112	3R_17766112_SNP [dm3] 3R_21940390_SNP [dm6]	T	C	1.895e^-4	0.827	INTERGENIC
3R	12456450	3R_12456450_SNP [dm3] 3R_16630728_SNP [dm6]	G	A	1.919e^-4	0.834	INTRON Fas1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	12129935	3R_12129935_SNP [dm3] 3R_16304213_SNP [dm6]	T	A	1.927e^-4	0.834	UTR_3_PRIME gish	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	3351891	3R_3351891_SNP [dm3] 3R_7526169_SNP [dm6]	G	C	1.928e^-4	0.834	UPSTREAM alpha-Est4aPsi INTRON alpha-Est6
3R	13455860	3R_13455860_SNP [dm3] 3R_17630138_SNP [dm6]	T	C	1.932e^-4	0.834	UPSTREAM tRNA:V4:90C & 1 other DOWNSTREAM tRNA:CR31569 INTERGENIC
2L	20223102	2L_20223102_SNP [dm3] 2L_20223102_SNP [dm6]	A	G	1.940e^-4	0.834	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17837726	2R_17837726_INS [dm3] 2R_21950221_INS [dm6]	G	GG	1.942e^-4	0.834	INTERGENIC
2L	6389241	2L_6389241_SNP [dm3] 2L_6389241_SNP [dm6]	G	A	1.943e^-4	0.834	INTRON CG42368	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_HSA
X	20583868	X_20583868_SNP [dm3] X_20712841_SNP [dm6]	A	G	1.951e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Kr
3L	2789351	3L_2789351_SNP [dm3] 3L_2789351_SNP [dm6]	G	A	1.963e^-4	0.837	SYNONYMOUS_CODING CG43444	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5140526	3L_5140526_SNP [dm3] 3L_5147426_SNP [dm6]	C	A	1.965e^-4	0.837	INTRON Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	4901310	2R_4901310_SNP [dm3] 2R_9013805_SNP [dm6]	C	T	1.973e^-4	0.839	UPSTREAM CG8172 DOWNSTREAM CG13744 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	11261609	2L_11261609_SNP [dm3] 2L_11261609_SNP [dm6]	G	T	1.986e^-4	0.841	NON_SYNONYMOUS_CODING cmet DOWNSTREAM ab
3L	5140525	3L_5140525_SNP [dm3] 3L_5147425_SNP [dm6]	C	T	1.989e^-4	0.841	INTRON Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	25211958	3R_25211958_SNP [dm3] 3R_29386236_SNP [dm6]	C	A	1.990e^-4	0.841	INTRON Ptp99A	TF binding site mE1_TFBS_inv
3R	4971394	3R_4971394_SNP [dm3] 3R_9145672_SNP [dm6]	C	T	2.000e^-4	0.843	INTRON pum	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24380464	3R_24380464_SNP [dm3] 3R_28554742_SNP [dm6]	C	T	2.010e^-4	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19995007	X_19995007_SNP [dm3] X_20100974_SNP [dm6]	C	T	2.012e^-4	0.844	INTERGENIC	transposable element FlyBase
2L	18306009	2L_18306009_SNP [dm3] 2L_18306009_SNP [dm6]	T	C	2.021e^-4	0.845	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17003744	3R_17003744_SNP [dm3] 3R_21178022_SNP [dm6]	A	G	2.023e^-4	0.845	INTRON SNF4Agamma
2L	11221788	2L_11221788_SNP [dm3] 2L_11221788_SNP [dm6]	C	T	2.037e^-4	0.847	INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5108960	2R_5108960_SNP [dm3] 2R_9221455_SNP [dm6]	T	C	2.045e^-4	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9762889	2L_9762889_SNP [dm3] 2L_9762889_SNP [dm6]	G	C	2.052e^-4	0.847	UPSTREAM und DOWNSTREAM zf30C INTRON Taf11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	4459891	2L_4459891_SNP [dm3] 2L_4459891_SNP [dm6]	T	C	2.053e^-4	0.847	UTR_5_PRIME CG15435 UPSTREAM mRpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2R	6729973	2R_6729973_SNP [dm3] 2R_10842468_SNP [dm6]	C	T	2.053e^-4	0.847	SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20127227	3R_20127227_SNP [dm3] 3R_24301505_SNP [dm6]	C	T	2.057e^-4	0.847	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	16653582	X_16653582_SNP [dm3] X_16759549_SNP [dm6]	T	A	2.062e^-4	0.847	INTRON if
3R	14377237	3R_14377237_SNP [dm3] 3R_18551515_SNP [dm6]	G	A	2.064e^-4	0.847	INTERGENIC
2L	10999664	2L_10999664_SNP [dm3] 2L_10999664_SNP [dm6]	G	A	2.074e^-4	0.849	SYNONYMOUS_CODING aub
2L	16071338	2L_16071338_SNP [dm3] 2L_16071338_SNP [dm6]	T	C	2.084e^-4	0.849	INTRON beat-Ia
X	16583251	X_16583251_SNP [dm3] X_16689218_SNP [dm6]	G	A	2.092e^-4	0.849	INTRON Sep4
2L	8167200	2L_8167200_DEL [dm3] 2L_8167200_DEL [dm6]	TAAAACATTTTAATCGAGTT...	T	2.096e^-4	0.849	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16071337	2L_16071337_SNP [dm3] 2L_16071337_SNP [dm6]	G	A	2.096e^-4	0.849	INTRON beat-Ia
3R	9138648	3R_9138648_SNP [dm3] 3R_13312926_SNP [dm6]	C	T	2.099e^-4	0.849	NON_SYNONYMOUS_CODING CG44142 DOWNSTREAM CG32473
2L	13494522	2L_13494522_SNP [dm3] 2L_13494522_SNP [dm6]	A	G	2.107e^-4	0.849	INTRON CG42784
3L	3050753	3L_3050753_SNP [dm3] 3L_3050753_SNP [dm6]	C	T	2.109e^-4	0.849	DOWNSTREAM Sk2 INTRON CG32485	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	3752119	3L_3752119_SNP [dm3] 3L_3752119_SNP [dm6]	G	A	2.116e^-4	0.849	INTRON CG32264
2R	15540040	2R_15540040_SNP [dm3] 2R_19652535_SNP [dm6]	A	G	2.120e^-4	0.849	UPSTREAM CR44213 INTRON Ir56e EXON CR44212
X	8369976	X_8369976_DEL [dm3] X_8475943_DEL [dm6]	ATATA	A	2.124e^-4	0.849	UTR_3_PRIME Cp7Fb INTRON CG33223
3R	12067973	3R_12067973_SNP [dm3] 3R_16242251_SNP [dm6]	T	A	2.131e^-4	0.849	UPSTREAM tara INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
3R	14178850	3R_14178850_SNP [dm3] 3R_18353128_SNP [dm6]	G	C	2.134e^-4	0.849	SYNONYMOUS_CODING CG15803	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11972967	2L_11972967_SNP [dm3] 2L_11972967_SNP [dm6]	T	A	2.136e^-4	0.849	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13116647	3R_13116647_SNP [dm3] 3R_17290925_SNP [dm6]	G	A	2.140e^-4	0.849	INTERGENIC
3L	11747243	3L_11747243_SNP [dm3] 3L_11754143_SNP [dm6]	A	G	2.142e^-4	0.849	INTRON CG6024
3R	12199970	3R_12199970_SNP [dm3] 3R_16374248_SNP [dm6]	C	T	2.146e^-4	0.849	DOWNSTREAM ss INTERGENIC
2L	567351	2L_567351_SNP [dm3] 2L_567351_SNP [dm6]	C	T	2.156e^-4	0.85	SYNONYMOUS_CODING Nle UPSTREAM CG2807 DOWNSTREAM CG2794	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	17503554	3R_17503554_SNP [dm3] 3R_21677832_SNP [dm6]	T	C	2.167e^-4	0.85	INTRON CG31176
2L	10987621	2L_10987621_SNP [dm3] 2L_10987621_SNP [dm6]	C	T	2.171e^-4	0.85	UPSTREAM CG12253 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3R	25458996	3R_25458996_SNP [dm3] 3R_29633274_SNP [dm6]	C	T	2.171e^-4	0.85	INTRON Dop1R2
2R	19573822	2R_19573822_SNP [dm3] 2R_23686299_SNP [dm6]	A	C	2.172e^-4	0.85	UPSTREAM l_2_efl INTRON St3
X	19504976	X_19504976_SNP [dm3] X_19610943_SNP [dm6]	C	G	2.181e^-4	0.852	UTR_3_PRIME CG14207 UPSTREAM Tyler & 1 other
2L	6100899	2L_6100899_SNP [dm3] 2L_6100899_SNP [dm6]	A	G	2.197e^-4	0.853	INTRON stai	TF binding site BDTNP1_TFBS_dl
2L	10817653	2L_10817653_SNP [dm3] 2L_10817653_SNP [dm6]	A	T	2.200e^-4	0.853	INTRON Nos
X	2385520	X_2385520_SNP [dm3] X_2491487_SNP [dm6]	G	A	2.217e^-4	0.853	SYNONYMOUS_CODING trol	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4062105	X_4062105_SNP [dm3] X_4168072_SNP [dm6]	G	T	2.226e^-4	0.853	INTRON Fas2	TF binding site mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3R	24488254	3R_24488254_SNP [dm3] 3R_28662532_SNP [dm6]	A	C	2.233e^-4	0.853	INTERGENIC
3L	6207851	3L_6207851_SNP [dm3] 3L_6214751_SNP [dm6]	A	T	2.234e^-4	0.853	INTRON LanA	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	8680483	3R_8680483_SNP [dm3] 3R_12854761_SNP [dm6]	C	T	2.238e^-4	0.853	DOWNSTREAM CG10126 INTERGENIC
2R	19993454	2R_19993454_SNP [dm3] 2R_24105931_SNP [dm6]	T	C	2.238e^-4	0.853	SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11849836	2L_11849836_SNP [dm3] 2L_11849836_SNP [dm6]	T	A	2.252e^-4	0.853	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
3R	13454516	3R_13454516_SNP [dm3] 3R_17628794_SNP [dm6]	C	T	2.254e^-4	0.853	SYNONYMOUS_CODING CG14325 DOWNSTREAM tRNA:V4:90C
3R	16051186	3R_16051186_SNP [dm3] 3R_20225464_SNP [dm6]	C	A	2.265e^-4	0.853	INTRON Nlg4
3R	24186672	3R_24186672_SNP [dm3] 3R_28360950_SNP [dm6]	C	T	2.265e^-4	0.853	INTERGENIC
3R	9282491	3R_9282491_SNP [dm3] 3R_13456769_SNP [dm6]	C	T	2.284e^-4	0.853	INTRON CR17025 & 1 other
2R	11872317	2R_11872317_SNP [dm3] 2R_15984812_SNP [dm6]	A	T	2.285e^-4	0.853	INTRON Strn-Mlck
3R	9493127	3R_9493127_SNP [dm3] 3R_13667405_SNP [dm6]	G	A	2.294e^-4	0.853	UTR_3_PRIME Task6 DOWNSTREAM B52
3R	3351865	3R_3351865_SNP [dm3] 3R_7526143_SNP [dm6]	G	A	2.296e^-4	0.853	UPSTREAM alpha-Est4aPsi INTRON alpha-Est6
2R	18475359	2R_18475359_SNP [dm3] 2R_22587854_SNP [dm6]	C	T	2.300e^-4	0.853	INTRON dnr1
X	22147886	X_22147886_SNP [dm3] X_22746050_SNP [dm6]	G	A	2.302e^-4	0.853	INTRON CR44997
2L	9620884	2L_9620884_SNP [dm3] 2L_9620884_SNP [dm6]	T	C	2.315e^-4	0.853	INTRON GlcAT-S
3L	2791989	3L_2791989_SNP [dm3] 3L_2791989_SNP [dm6]	G	A	2.315e^-4	0.853	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12520191	3L_12520191_INS [dm3] 3L_12527091_INS [dm6]	A	ACTT	2.316e^-4	0.853	UPSTREAM eIF-2beta DOWNSTREAM nst INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17503480	3R_17503480_SNP [dm3] 3R_21677758_SNP [dm6]	G	T	2.318e^-4	0.853	INTRON CG31176
3R	26093482	3R_26093482_SNP [dm3] 3R_30267760_SNP [dm6]	A	G	2.327e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	9411256	2R_9411256_SNP [dm3] 2R_13523751_SNP [dm6]	T	A	2.332e^-4	0.853	DOWNSTREAM CG13331 INTRON Vmat
3R	15216297	3R_15216297_DEL [dm3] 3R_19390575_DEL [dm6]	CATT	C	2.338e^-4	0.853	DOWNSTREAM CG3734 INTRON Ino80 & 1 other
3R	8682999	3R_8682999_SNP [dm3] 3R_12857277_SNP [dm6]	A	C	2.346e^-4	0.853	INTRON CG10126
2R	14494194	2R_14494194_SNP [dm3] 2R_18606689_SNP [dm6]	T	A	2.349e^-4	0.853	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3L	8287377	3L_8287377_SNP [dm3] 3L_8294277_SNP [dm6]	A	C	2.350e^-4	0.853	INTRON CG7201
3L	20152134	3L_20152134_SNP [dm3] 3L_20159034_SNP [dm6]	A	G	2.353e^-4	0.853	INTRON CG42674
3R	8667526	3R_8667526_SNP [dm3] 3R_12841804_SNP [dm6]	A	T	2.356e^-4	0.853	UTR_3_PRIME beat-Va DOWNSTREAM beat-Va
X	2927346	X_2927346_SNP [dm3] X_3033313_SNP [dm6]	A	T	2.358e^-4	0.853	INTRON kirre
3R	22402864	3R_22402864_SNP [dm3] 3R_26577142_SNP [dm6]	G	C	2.362e^-4	0.853	UTR_3_PRIME scrib INTRON scrib
X	18654203	X_18654203_SNP [dm3] X_18760170_SNP [dm6]	A	G	2.363e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	9977849	X_9977849_SNP [dm3] X_10083816_SNP [dm6]	A	C	2.376e^-4	0.853	SYNONYMOUS_CODING CG2972	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4287838	3R_4287838_SNP [dm3] 3R_8462116_SNP [dm6]	A	C	2.379e^-4	0.853	INTRON CG45263
3L	19578985	3L_19578985_SNP [dm3] 3L_19585885_SNP [dm6]	A	T	2.380e^-4	0.853	NON_SYNONYMOUS_CODING CG9231 UPSTREAM CG9330	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	9446299	X_9446299_SNP [dm3] X_9552266_SNP [dm6]	A	T	2.401e^-4	0.853	SYNONYMOUS_CODING l_1_G0320	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16456402	2R_16456402_SNP [dm3] 2R_20568897_SNP [dm6]	C	T	2.403e^-4	0.853	INTRON qsm
2R	4872174	2R_4872174_SNP [dm3] 2R_8984669_SNP [dm6]	G	A	2.404e^-4	0.853	INTRON CG8213	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	19995043	X_19995043_SNP [dm3] X_20101010_SNP [dm6]	T	A	2.405e^-4	0.853	INTERGENIC	transposable element FlyBase
X	4985543	X_4985543_SNP [dm3] X_5091510_SNP [dm6]	C	T	2.407e^-4	0.853	INTRON rg & 1 other
3L	8145597	3L_8145597_SNP [dm3] 3L_8152497_SNP [dm6]	T	G	2.418e^-4	0.853	UPSTREAM CG13676 INTERGENIC
3L	2829423	3L_2829423_SNP [dm3] 3L_2829423_SNP [dm6]	A	T	2.422e^-4	0.853	INTRON CG43444
3L	5010800	3L_5010800_SNP [dm3] 3L_5010800_SNP [dm6]	G	A	2.426e^-4	0.853	DOWNSTREAM CG12027 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11951382	2L_11951382_SNP [dm3] 2L_11951382_SNP [dm6]	T	C	2.431e^-4	0.853	DOWNSTREAM CR43314 INTERGENIC
X	2607503	X_2607503_SNP [dm3] X_2713470_SNP [dm6]	T	C	2.434e^-4	0.853	UPSTREAM CG2694 INTRON CG2685	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18142467	2L_18142467_SNP [dm3] 2L_18142467_SNP [dm6]	T	G	2.442e^-4	0.853	NON_SYNONYMOUS_CODING Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19503048	X_19503048_SNP [dm3] X_19609015_SNP [dm6]	C	T	2.445e^-4	0.853	INTRON CG14207	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25458166	3R_25458166_SNP [dm3] 3R_29632444_SNP [dm6]	C	T	2.447e^-4	0.853	SYNONYMOUS_CODING Dop1R2 UTR_3_PRIME Dop1R2	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19014109	X_19014109_SNP [dm3] X_19120076_SNP [dm6]	T	G	2.448e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_inv
3R	13319465	3R_13319465_SNP [dm3] 3R_17493743_SNP [dm6]	T	C	2.454e^-4	0.853	INTRON Dscam3
3L	14388947	3L_14388947_SNP [dm3] 3L_14395847_SNP [dm6]	G	T	2.465e^-4	0.853	INTERGENIC
2L	13020068	2L_13020068_DEL [dm3] 2L_13020068_DEL [dm6]	AAA	A	2.469e^-4	0.853	UPSTREAM CG9934 INTRON A16	TF binding site mE1_TFBS_cad
2L	18581611	2L_18581611_SNP [dm3] 2L_18581611_SNP [dm6]	A	T	2.472e^-4	0.853	INTRON Pde11	transposable element FlyBase
3R	24209648	3R_24209648_SNP [dm3] 3R_28383926_SNP [dm6]	C	G	2.478e^-4	0.853	INTERGENIC
2L	6100925	2L_6100925_SNP [dm3] 2L_6100925_SNP [dm6]	G	T	2.484e^-4	0.853	INTRON stai	TF binding site BDTNP1_TFBS_dl
2L	1837875	2L_1837875_SNP [dm3] 2L_1837875_SNP [dm6]	G	A	2.485e^-4	0.853	INTRON wry
3R	27004114	3R_27004114_SNP [dm3] 3R_31178392_SNP [dm6]	G	A	2.495e^-4	0.853	UTR_3_PRIME mesh DOWNSTREAM Gycbeta100B
2L	11226269	2L_11226269_SNP [dm3] 2L_11226269_SNP [dm6]	G	T	2.500e^-4	0.853	INTRON ab
2R	9411241	2R_9411241_SNP [dm3] 2R_13523736_SNP [dm6]	C	T	2.510e^-4	0.853	DOWNSTREAM CG13331 INTRON Vmat
3L	1855060	3L_1855060_SNP [dm3] 3L_1855060_SNP [dm6]	G	A	2.519e^-4	0.853	UTR_5_PRIME CG13936
X	20392477	X_20392477_DEL [dm3] X_20521450_DEL [dm6]	AGGCTATGTGTACACATTAA...	A	2.521e^-4	0.853	INTRON Tak1
3R	9165596	3R_9165596_SNP [dm3] 3R_13339874_SNP [dm6]	G	A	2.528e^-4	0.853	INTRON PK2-R1
2R	11888104	2R_11888104_SNP [dm3] 2R_16000599_SNP [dm6]	G	A	2.531e^-4	0.853	UPSTREAM CG8370 & 1 other INTRON ATPCL	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2R	18450039	2R_18450039_SNP [dm3] 2R_22562534_SNP [dm6]	G	A	2.541e^-4	0.853	SYNONYMOUS_CODING CG11362 UPSTREAM px DOWNSTREAM dnr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	10987232	3R_10987232_SNP [dm3] 3R_15161510_SNP [dm6]	T	C	2.542e^-4	0.853	INTRON Gyc88E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
X	9912729	X_9912729_INS [dm3] X_10018696_INS [dm6]	C	CC	2.547e^-4	0.853	INTRON Cht6
2L	11378443	2L_11378443_SNP [dm3] 2L_11378443_SNP [dm6]	A	C	2.548e^-4	0.853	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	11481674	2L_11481674_SNP [dm3] 2L_11481674_SNP [dm6]	C	T	2.550e^-4	0.853	INTERGENIC
X	7071373	X_7071373_SNP [dm3] X_7177340_SNP [dm6]	G	A	2.558e^-4	0.853	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13152900	3L_13152900_SNP [dm3] 3L_13159800_SNP [dm6]	T	C	2.561e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19134425	2R_19134425_SNP [dm3] 2R_23246902_SNP [dm6]	C	A	2.567e^-4	0.853	SYNONYMOUS_CODING RpL22-like	TF binding site mE1_TFBS_cad
X	4064650	X_4064650_SNP [dm3] X_4170617_SNP [dm6]	G	A	2.567e^-4	0.853	INTRON Fas2	TF binding site mE1_TFBS_inv
3R	9138659	3R_9138659_SNP [dm3] 3R_13312937_SNP [dm6]	A	T	2.569e^-4	0.853	NON_SYNONYMOUS_CODING CG44142 DOWNSTREAM CG32473
2L	11481647	2L_11481647_SNP [dm3] 2L_11481647_SNP [dm6]	C	T	2.571e^-4	0.853	INTERGENIC
2L	10987554	2L_10987554_SNP [dm3] 2L_10987554_SNP [dm6]	A	G	2.578e^-4	0.853	UPSTREAM CG12253 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2L	10279462	2L_10279462_SNP [dm3] 2L_10279462_SNP [dm6]	A	C	2.592e^-4	0.853	UPSTREAM Utx INTRON CG34043
2R	19573426	2R_19573426_DEL [dm3] 2R_23685903_DEL [dm6]	CAGAG	C	2.592e^-4	0.853	UPSTREAM l_2_efl INTRON St3
X	12562681	X_12562681_SNP [dm3] X_12668648_SNP [dm6]	A	G	2.594e^-4	0.853	INTRON Tis11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	13490922	3L_13490922_SNP [dm3] 3L_13497822_SNP [dm6]	G	A	2.613e^-4	0.853	INTRON Tgi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14460904	2R_14460904_SNP [dm3] 2R_18573399_SNP [dm6]	C	T	2.620e^-4	0.853	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3871548	2L_3871548_SNP [dm3] 2L_3871548_SNP [dm6]	A	G	2.626e^-4	0.853	UTR_3_PRIME CG31957 DOWNSTREAM Cep97	TF binding site mE1_TFBS_sens
3R	9109807	3R_9109807_SNP [dm3] 3R_13284085_SNP [dm6]	C	A	2.644e^-4	0.853	UTR_3_PRIME CG8630 DOWNSTREAM CG15888	TF binding site mE1_TFBS_cad
3L	18204258	3L_18204258_SNP [dm3] 3L_18211158_SNP [dm6]	G	T	2.649e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	15040857	3R_15040857_SNP [dm3] 3R_19215135_SNP [dm6]	T	C	2.650e^-4	0.853	DOWNSTREAM vib INTRON cry
2L	6100866	2L_6100866_SNP [dm3] 2L_6100866_SNP [dm6]	C	T	2.653e^-4	0.853	INTRON stai	TF binding site BDTNP1_TFBS_dl
3R	21899147	3R_21899147_SNP [dm3] 3R_26073425_SNP [dm6]	T	A	2.660e^-4	0.853	INTERGENIC
3R	8678444	3R_8678444_SNP [dm3] 3R_12852722_SNP [dm6]	G	A	2.664e^-4	0.853	INTERGENIC
3R	9275659	3R_9275659_SNP [dm3] 3R_13449937_SNP [dm6]	T	A	2.677e^-4	0.853	UPSTREAM CG14372 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19647436	2R_19647436_SNP [dm3] 2R_23759913_SNP [dm6]	C	T	2.684e^-4	0.853	INTRON CG9850	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	17166880	X_17166880_SNP [dm3] X_17272847_SNP [dm6]	T	A	2.693e^-4	0.853	INTRON f	TF binding site mE1_TFBS_cad
3L	10243480	3L_10243480_SNP [dm3] 3L_10250380_SNP [dm6]	G	A	2.694e^-4	0.853	INTERGENIC
3R	20496111	3R_20496111_SNP [dm3] 3R_24670389_SNP [dm6]	G	C	2.697e^-4	0.853	INTRON slo	TF binding site mE1_TFBS_cad
2L	9413057	2L_9413057_SNP [dm3] 2L_9413057_SNP [dm6]	G	A	2.698e^-4	0.853	INTRON Shawl
3L	2074684	3L_2074684_SNP [dm3] 3L_2074684_SNP [dm6]	G	A	2.703e^-4	0.853	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_sens
3R	17003317	3R_17003317_SNP [dm3] 3R_21177595_SNP [dm6]	T	A	2.711e^-4	0.853	INTRON SNF4Agamma
2R	14399446	2R_14399446_SNP [dm3] 2R_18511941_SNP [dm6]	T	C	2.723e^-4	0.853	INTERGENIC
2L	11583748	2L_11583748_SNP [dm3] 2L_11583748_SNP [dm6]	C	T	2.724e^-4	0.853	INTRON kek2
3R	24485206	3R_24485206_SNP [dm3] 3R_28659484_SNP [dm6]	A	G	2.728e^-4	0.853	INTERGENIC
2L	11351151	2L_11351151_SNP [dm3] 2L_11351151_SNP [dm6]	C	T	2.728e^-4	0.853	INTERGENIC	regulatory region REDfly_CRMs
3R	9097957	3R_9097957_SNP [dm3] 3R_13272235_SNP [dm6]	A	T	2.729e^-4	0.853	UPSTREAM CG8449 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13083761	2L_13083761_SNP [dm3] 2L_13083761_SNP [dm6]	G	A	2.730e^-4	0.853	INTERGENIC
3R	21899156	3R_21899156_INS [dm3] 3R_26073434_INS [dm6]	T	TTTACTTATTTTGTAGCCCA...	2.739e^-4	0.853	INTERGENIC
2R	12320012	2R_12320012_SNP [dm3] 2R_16432507_SNP [dm6]	T	C	2.746e^-4	0.853	SYNONYMOUS_CODING CG4398 DOWNSTREAM Sema-2b
3L	5011150	3L_5011150_SNP [dm3] 3L_5011150_SNP [dm6]	C	T	2.750e^-4	0.853	DOWNSTREAM CG12027 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12613916	X_12613916_DEL [dm3] X_12719883_DEL [dm6]	AA	A	2.752e^-4	0.853	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8678664	3R_8678664_SNP [dm3] 3R_12852942_SNP [dm6]	T	C	2.756e^-4	0.853	INTERGENIC
3L	2421738	3L_2421738_SNP [dm3] 3L_2421738_SNP [dm6]	C	T	2.759e^-4	0.853	INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7199684	3R_7199684_SNP [dm3] 3R_11373962_SNP [dm6]	T	C	2.760e^-4	0.853	SYNONYMOUS_CODING pros	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	6264354	2L_6264354_SNP [dm3] 2L_6264354_SNP [dm6]	A	G	2.762e^-4	0.853	INTRON Ddr & 1 other	TF binding site mE1_TFBS_sens
X	4166637	X_4166637_SNP [dm3] X_4272604_SNP [dm6]	T	C	2.762e^-4	0.853	INTERGENIC
2R	14494184	2R_14494184_SNP [dm3] 2R_18606679_SNP [dm6]	G	A	2.773e^-4	0.853	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2R	19111583	2R_19111583_SNP [dm3] 2R_23224060_SNP [dm6]	G	A	2.781e^-4	0.853	INTERGENIC
3L	18426792	3L_18426792_SNP [dm3] 3L_18433692_SNP [dm6]	C	T	2.784e^-4	0.853	INTERGENIC
2R	18966596	2R_18966596_SNP [dm3] 2R_23079073_SNP [dm6]	A	G	2.793e^-4	0.853	UPSTREAM Art7 DOWNSTREAM CG43659 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	8679884	3R_8679884_SNP [dm3] 3R_12854162_SNP [dm6]	A	G	2.796e^-4	0.853	INTERGENIC
X	12613909	X_12613909_SNP [dm3] X_12719876_SNP [dm6]	T	C	2.797e^-4	0.853	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25351641	3R_25351641_SNP [dm3] 3R_29525919_SNP [dm6]	G	A	2.798e^-4	0.853	INTERGENIC
X	11154650	X_11154650_SNP [dm3] X_11260617_SNP [dm6]	T	C	2.802e^-4	0.853	INTRON CG44422
2R	18144849	2R_18144849_SNP [dm3] 2R_22257344_SNP [dm6]	A	G	2.820e^-4	0.853	INTRON dve	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	13088513	3R_13088513_SNP [dm3] 3R_17262791_SNP [dm6]	T	C	2.826e^-4	0.853	INTRON beat-IIb
3L	10506720	3L_10506720_SNP [dm3] 3L_10513620_SNP [dm6]	C	T	2.850e^-4	0.853	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl
2L	10987518	2L_10987518_SNP [dm3] 2L_10987518_SNP [dm6]	G	T	2.851e^-4	0.853	UPSTREAM CG12253 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
X	19882636	X_19882636_SNP [dm3] X_19988603_SNP [dm6]	T	G	2.860e^-4	0.853	INTERGENIC
X	6641011	X_6641011_SNP [dm3] X_6746978_SNP [dm6]	G	T	2.862e^-4	0.853	UPSTREAM CG14439 DOWNSTREAM CR44895 EXON CR44964	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	6100938	2L_6100938_SNP [dm3] 2L_6100938_SNP [dm6]	G	A	2.875e^-4	0.853	INTRON stai	TF binding site BDTNP1_TFBS_dl
X	5010404	X_5010404_INS [dm3] X_5116371_INS [dm6]	G	GG	2.877e^-4	0.853	INTRON rg & 1 other
2L	18093650	2L_18093650_SNP [dm3] 2L_18093650_SNP [dm6]	T	A	2.883e^-4	0.853	INTERGENIC
3R	20318375	3R_20318375_SNP [dm3] 3R_24492653_SNP [dm6]	C	A	2.884e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	2100608	3L_2100608_SNP [dm3] 3L_2100608_SNP [dm6]	G	A	2.893e^-4	0.853	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25349864	3R_25349864_SNP [dm3] 3R_29524142_SNP [dm6]	A	T	2.896e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14475003	2L_14475003_SNP [dm3] 2L_14475003_SNP [dm6]	T	C	2.897e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	25538455	3R_25538455_SNP [dm3] 3R_29712733_SNP [dm6]	T	A	2.900e^-4	0.853	DOWNSTREAM CR45569 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	12520246	3L_12520246_SNP [dm3] 3L_12527146_SNP [dm6]	A	G	2.904e^-4	0.853	UPSTREAM eIF-2beta DOWNSTREAM nst INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12199828	3R_12199828_SNP [dm3] 3R_16374106_SNP [dm6]	A	G	2.904e^-4	0.853	DOWNSTREAM ss INTERGENIC
2L	18299127	2L_18299127_SNP [dm3] 2L_18299127_SNP [dm6]	G	A	2.911e^-4	0.853	INTERGENIC
3R	26094190	3R_26094190_DEL [dm3] 3R_30268468_DEL [dm6]	AAAATGTTTGATCAAAATGC...	A	2.915e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	1854102	3L_1854102_INS [dm3] 3L_1854102_INS [dm6]	G	GCTGGGCTTCG...	2.926e^-4	0.853	INTRON CG13936
2R	18026957	2R_18026957_SNP [dm3] 2R_22139452_SNP [dm6]	T	C	2.927e^-4	0.853	UPSTREAM gom DOWNSTREAM CG11269 INTRON a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15042956	3L_15042956_SNP [dm3] 3L_15049856_SNP [dm6]	T	A	2.928e^-4	0.853	NON_SYNONYMOUS_CODING CG18581 UPSTREAM CG43678 DOWNSTREAM CG12310 & 1 other INTRON Sytbeta	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17003312	3R_17003312_DEL [dm3] 3R_21177590_DEL [dm6]	GC	G	2.929e^-4	0.853	INTRON SNF4Agamma
2R	15396673	2R_15396673_SNP [dm3] 2R_19509168_SNP [dm6]	C	T	2.930e^-4	0.853	SYNONYMOUS_CODING Ir56b UPSTREAM Ir56c
3R	10908901	3R_10908901_SNP [dm3] 3R_15083179_SNP [dm6]	G	T	2.934e^-4	0.853	SYNONYMOUS_CODING CG6966
2L	12804984	2L_12804984_SNP [dm3] 2L_12804984_SNP [dm6]	A	G	2.941e^-4	0.853	INTERGENIC
3L	9736788	3L_9736788_SNP [dm3] 3L_9743688_SNP [dm6]	C	G	2.945e^-4	0.853	UTR_5_PRIME CG42268 INTRON CG42268 & 1 other
2L	1784057	2L_1784057_SNP [dm3] 2L_1784057_SNP [dm6]	G	T	2.955e^-4	0.853	UPSTREAM Gr22e INTERGENIC	TF binding site mE1_TFBS_cad
3R	9093321	3R_9093321_SNP [dm3] 3R_13267599_SNP [dm6]	C	T	2.955e^-4	0.853	SYNONYMOUS_CODING Su_var_3-7	TF binding site mE1_TFBS_chinmo
3R	8688825	3R_8688825_SNP [dm3] 3R_12863103_SNP [dm6]	T	C	2.958e^-4	0.853	INTERGENIC
3R	25348001	3R_25348001_SNP [dm3] 3R_29522279_SNP [dm6]	A	G	2.959e^-4	0.853	INTERGENIC
2L	6263861	2L_6263861_SNP [dm3] 2L_6263861_SNP [dm6]	C	G	2.971e^-4	0.853	NON_SYNONYMOUS_CODING CG13983 INTRON Ddr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16790057	3L_16790057_SNP [dm3] 3L_16796957_SNP [dm6]	A	G	2.973e^-4	0.853	INTRON CG9674
3R	8667317	3R_8667317_SNP [dm3] 3R_12841595_SNP [dm6]	C	A	2.975e^-4	0.853	UTR_3_PRIME beat-Va DOWNSTREAM beat-Va
2R	9411233	2R_9411233_SNP [dm3] 2R_13523728_SNP [dm6]	A	T	2.980e^-4	0.853	DOWNSTREAM CG13331 INTRON Vmat
X	15350950	X_15350950_SNP [dm3] X_15456917_SNP [dm6]	G	T	2.984e^-4	0.853	SYNONYMOUS_CODING shtd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15350993	X_15350993_SNP [dm3] X_15456960_SNP [dm6]	C	A	2.984e^-4	0.853	INTRON shtd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26140391	3R_26140391_SNP [dm3] 3R_30314669_SNP [dm6]	A	T	2.990e^-4	0.853	INTRON hdc
2L	11238731	2L_11238731_SNP [dm3] 2L_11238731_SNP [dm6]	A	C	2.995e^-4	0.853	INTRON ab
2R	14637563	2R_14637563_SNP [dm3] 2R_18750058_SNP [dm6]	C	T	3.009e^-4	0.853	INTRON Hs3st-A
3R	10800149	3R_10800149_SNP [dm3] 3R_14974427_SNP [dm6]	G	A	3.009e^-4	0.853	INTERGENIC
3R	14178988	3R_14178988_SNP [dm3] 3R_18353266_SNP [dm6]	C	T	3.009e^-4	0.853	SYNONYMOUS_CODING CG15803	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11040177	2R_11040177_SNP [dm3] 2R_15152672_SNP [dm6]	G	A	3.010e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	10921407	X_10921407_SNP [dm3] X_11027374_SNP [dm6]	T	C	3.015e^-4	0.853	INTRON CG42339
3R	9493129	3R_9493129_SNP [dm3] 3R_13667407_SNP [dm6]	G	A	3.025e^-4	0.853	UTR_3_PRIME Task6 DOWNSTREAM B52
3R	8667555	3R_8667555_SNP [dm3] 3R_12841833_SNP [dm6]	A	C	3.025e^-4	0.853	UTR_3_PRIME beat-Va DOWNSTREAM beat-Va
2L	3756542	2L_3756542_SNP [dm3] 2L_3756542_SNP [dm6]	C	A	3.029e^-4	0.853	UPSTREAM CG43707 INTERGENIC
2L	8883344	2L_8883344_SNP [dm3] 2L_8883344_SNP [dm6]	C	T	3.034e^-4	0.853	INTERGENIC
X	16583202	X_16583202_SNP [dm3] X_16689169_SNP [dm6]	T	C	3.041e^-4	0.853	INTRON Sep4
3R	4037117	3R_4037117_SNP [dm3] 3R_8211395_SNP [dm6]	T	G	3.042e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_sens
2R	11162738	2R_11162738_DEL [dm3] 2R_15275233_DEL [dm6]	TAA	G	3.044e^-4	0.853	SPLICE_SITE_REGION Trpm INTRON Trpm
2R	17491712	2R_17491712_SNP [dm3] 2R_21604207_SNP [dm6]	T	C	3.054e^-4	0.853	EXON CR45150
2R	6213418	2R_6213418_SNP [dm3] 2R_10325913_SNP [dm6]	T	G	3.058e^-4	0.853	INTRON CG42732
2R	11888198	2R_11888198_SNP [dm3] 2R_16000693_SNP [dm6]	G	A	3.059e^-4	0.853	UPSTREAM CG8370 & 1 other INTRON ATPCL	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3L	5546711	3L_5546711_SNP [dm3] 3L_5553611_SNP [dm6]	C	G	3.079e^-4	0.853	INTERGENIC
3R	12199838	3R_12199838_SNP [dm3] 3R_16374116_SNP [dm6]	A	G	3.082e^-4	0.853	DOWNSTREAM ss INTERGENIC
X	11001655	X_11001655_SNP [dm3] X_11107622_SNP [dm6]	A	G	3.097e^-4	0.853	NON_SYNONYMOUS_CODING CG42249 UPSTREAM Hsp60 DOWNSTREAM CG42249
3R	17003135	3R_17003135_SNP [dm3] 3R_21177413_SNP [dm6]	A	T	3.099e^-4	0.853	INTRON SNF4Agamma
2R	18672083	2R_18672083_SNP [dm3] 2R_22784578_SNP [dm6]	T	A	3.103e^-4	0.853	UTR_5_PRIME CG30270 INTRON CG42260
3R	21899153	3R_21899153_SNP [dm3] 3R_26073431_SNP [dm6]	G	A	3.108e^-4	0.853	INTERGENIC
X	21896707	X_21896707_SNP [dm3] X_22494871_SNP [dm6]	G	A	3.115e^-4	0.853	INTRON l_1_G0196	transposable element FlyBase
2L	567798	2L_567798_SNP [dm3] 2L_567798_SNP [dm6]	G	C	3.119e^-4	0.853	SYNONYMOUS_CODING Nle UPSTREAM CG2807	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	7828795	3L_7828795_SNP [dm3] 3L_7835695_SNP [dm6]	C	T	3.141e^-4	0.853	INTRON Pdp1
3R	25906679	3R_25906679_SNP [dm3] 3R_30080957_SNP [dm6]	C	T	3.153e^-4	0.853	INTRON sima
3R	24485299	3R_24485299_SNP [dm3] 3R_28659577_SNP [dm6]	T	C	3.154e^-4	0.853	INTERGENIC
3R	12198509	3R_12198509_SNP [dm3] 3R_16372787_SNP [dm6]	C	G	3.158e^-4	0.853	UPSTREAM CR45193 INTERGENIC
2L	10976672	2L_10976672_SNP [dm3] 2L_10976672_SNP [dm6]	T	C	3.160e^-4	0.853	UPSTREAM SCAR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_zfh1
2L	567795	2L_567795_SNP [dm3] 2L_567795_SNP [dm6]	T	C	3.160e^-4	0.853	SYNONYMOUS_CODING Nle UPSTREAM CG2807	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	6100863	2L_6100863_SNP [dm3] 2L_6100863_SNP [dm6]	A	G	3.191e^-4	0.853	INTRON stai	TF binding site BDTNP1_TFBS_dl
2R	19094220	2R_19094220_SNP [dm3] 2R_23206697_SNP [dm6]	G	A	3.196e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	8677877	3R_8677877_SNP [dm3] 3R_12852155_SNP [dm6]	A	C	3.205e^-4	0.853	INTERGENIC
3L	16024867	3L_16024867_SNP [dm3] 3L_16031767_SNP [dm6]	T	A	3.217e^-4	0.853	UTR_3_PRIME Notum DOWNSTREAM mir-4941 & 1 other
3L	16790061	3L_16790061_SNP [dm3] 3L_16796961_SNP [dm6]	T	C	3.217e^-4	0.853	INTRON CG9674
2R	19563250	2R_19563250_SNP [dm3] 2R_23675727_SNP [dm6]	A	G	3.222e^-4	0.853	INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16462776	2R_16462776_SNP [dm3] 2R_20575271_SNP [dm6]	G	T	3.232e^-4	0.853	INTRON qsm
3L	1024910	3L_1024910_SNP [dm3] 3L_1024910_SNP [dm6]	G	A	3.242e^-4	0.853	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	567801	2L_567801_SNP [dm3] 2L_567801_SNP [dm6]	G	A	3.265e^-4	0.853	SYNONYMOUS_CODING Nle UPSTREAM CG2807	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5328786	X_5328786_SNP [dm3] X_5434753_SNP [dm6]	C	T	3.266e^-4	0.853	INTRON CR44471
2R	3933009	2R_3933009_SNP [dm3] 2R_8045504_SNP [dm6]	C	G	3.267e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	9871571	2L_9871571_SNP [dm3] 2L_9871571_SNP [dm6]	A	G	3.270e^-4	0.853	INTRON nAChRalpha6
2L	17554583	2L_17554583_SNP [dm3] 2L_17554583_SNP [dm6]	C	T	3.279e^-4	0.853	SYNONYMOUS_CODING CG7094
3R	8752363	3R_8752363_SNP [dm3] 3R_12926641_SNP [dm6]	T	C	3.281e^-4	0.853	INTRON beat-Vb
3R	9062796	3R_9062796_SNP [dm3] 3R_13237074_SNP [dm6]	T	G	3.286e^-4	0.853	INTRON Ace
2L	9763025	2L_9763025_SNP [dm3] 2L_9763025_SNP [dm6]	C	T	3.291e^-4	0.853	SYNONYMOUS_CODING Taf11 UPSTREAM und DOWNSTREAM zf30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	19516629	X_19516629_SNP [dm3] X_19622596_SNP [dm6]	G	A	3.294e^-4	0.853	SYNONYMOUS_CODING NAA20 UPSTREAM MKP-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14388249	3L_14388249_DEL [dm3] 3L_14395149_DEL [dm6]	CAGC	A	3.295e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	1753483	3L_1753483_SNP [dm3] 3L_1753483_SNP [dm6]	A	G	3.296e^-4	0.853	SYNONYMOUS_CODING Cht2	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19341467	2L_19341467_SNP [dm3] 2L_19341467_SNP [dm6]	C	A	3.302e^-4	0.853	INTRON dnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18599254	3L_18599254_SNP [dm3] 3L_18606154_SNP [dm6]	G	A	3.315e^-4	0.853	NON_SYNONYMOUS_CODING CG18233 DOWNSTREAM CG18234 INTRON CG4174 & 1 other
3R	10800204	3R_10800204_SNP [dm3] 3R_14974482_SNP [dm6]	G	A	3.320e^-4	0.853	INTERGENIC
2L	8327683	2L_8327683_SNP [dm3] 2L_8327683_SNP [dm6]	C	A	3.326e^-4	0.853	INTRON CG14275
2R	4048624	2R_4048624_SNP [dm3] 2R_8161119_SNP [dm6]	G	T	3.333e^-4	0.853	UTR_5_PRIME CG8708 DOWNSTREAM RagC-D INTRON CG8708
3R	21899137	3R_21899137_SNP [dm3] 3R_26073415_SNP [dm6]	T	C	3.348e^-4	0.853	INTERGENIC
2R	13058518	2R_13058518_SNP [dm3] 2R_17171013_SNP [dm6]	C	G	3.358e^-4	0.853	INTERGENIC
2L	11022990	2L_11022990_SNP [dm3] 2L_11022990_SNP [dm6]	G	A	3.367e^-4	0.853	INTRON Samuel
3R	8680394	3R_8680394_SNP [dm3] 3R_12854672_SNP [dm6]	G	T	3.368e^-4	0.853	DOWNSTREAM CG10126 INTERGENIC
3L	14314217	3L_14314217_SNP [dm3] 3L_14321117_SNP [dm6]	C	T	3.369e^-4	0.853	INTRON fz
X	19623823	X_19623823_SNP [dm3] X_19729790_SNP [dm6]	T	C	3.370e^-4	0.853	UTR_3_PRIME CG12531
2L	9762947	2L_9762947_SNP [dm3] 2L_9762947_SNP [dm6]	C	T	3.376e^-4	0.853	SYNONYMOUS_CODING Taf11 UPSTREAM und DOWNSTREAM zf30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	14432583	3L_14432583_SNP [dm3] 3L_14439483_SNP [dm6]	A	T	3.383e^-4	0.853	INTRON bbg
X	19878700	X_19878700_SNP [dm3] X_19984667_SNP [dm6]	T	C	3.390e^-4	0.853	INTERGENIC
3R	13322825	3R_13322825_SNP [dm3] 3R_17497103_SNP [dm6]	A	T	3.400e^-4	0.853	INTRON Dscam3
X	7131032	X_7131032_SNP [dm3] X_7236999_SNP [dm6]	T	C	3.401e^-4	0.853	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9762848	2L_9762848_SNP [dm3] 2L_9762848_SNP [dm6]	A	G	3.405e^-4	0.853	UPSTREAM und DOWNSTREAM zf30C INTRON Taf11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	15540098	2R_15540098_SNP [dm3] 2R_19652593_SNP [dm6]	A	T	3.421e^-4	0.853	UPSTREAM CR44213 INTRON Ir56e EXON CR44212
3R	9097949	3R_9097949_SNP [dm3] 3R_13272227_SNP [dm6]	A	T	3.429e^-4	0.853	UPSTREAM CG8449 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10437437	2L_10437437_SNP [dm3] 2L_10437437_SNP [dm6]	T	C	3.433e^-4	0.853	UPSTREAM CHIP DOWNSTREAM holn1 INTERGENIC	transposable element FlyBase
X	17732879	X_17732879_SNP [dm3] X_17838846_SNP [dm6]	G	A	3.433e^-4	0.853	INTRON CG6398
2R	19101796	2R_19101796_SNP [dm3] 2R_23214273_SNP [dm6]	C	G	3.437e^-4	0.853	INTERGENIC
X	11154667	X_11154667_SNP [dm3] X_11260634_SNP [dm6]	A	T	3.444e^-4	0.853	INTRON CG44422
2L	9767929	2L_9767929_SNP [dm3] 2L_9767929_SNP [dm6]	G	A	3.447e^-4	0.853	SYNONYMOUS_CODING CG4017 INTRON ppk18
3R	23183365	3R_23183365_SNP [dm3] 3R_27357643_SNP [dm6]	G	A	3.450e^-4	0.853	INTRON CG42534
3R	12255053	3R_12255053_SNP [dm3] 3R_16429331_SNP [dm6]	G	A	3.457e^-4	0.853	DOWNSTREAM CR45631 INTERGENIC
3R	9312106	3R_9312106_SNP [dm3] 3R_13486384_SNP [dm6]	A	G	3.459e^-4	0.853	INTERGENIC
2L	4396876	2L_4396876_SNP [dm3] 2L_4396876_SNP [dm6]	G	A	3.471e^-4	0.853	SYNONYMOUS_CODING l_2_k05819
3L	14388602	3L_14388602_SNP [dm3] 3L_14395502_SNP [dm6]	C	G	3.471e^-4	0.853	INTERGENIC
3R	8670156	3R_8670156_SNP [dm3] 3R_12844434_SNP [dm6]	A	G	3.473e^-4	0.853	INTRON beat-Va
2R	6393752	2R_6393752_SNP [dm3] 2R_10506247_SNP [dm6]	A	T	3.474e^-4	0.853	DOWNSTREAM lola INTRON lola	TF binding site mE1_TFBS_inv
2R	19574560	2R_19574560_SNP [dm3] 2R_23687037_SNP [dm6]	C	A	3.478e^-4	0.853	NON_SYNONYMOUS_CODING St3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18144027	X_18144027_SNP [dm3] X_18249994_SNP [dm6]	C	T	3.479e^-4	0.853	INTERGENIC
2L	7375826	2L_7375826_SNP [dm3] 2L_7375826_SNP [dm6]	T	C	3.485e^-4	0.853	SPLICE_SITE_REGION Wnt10 INTRON Wnt10
3R	8685077	3R_8685077_SNP [dm3] 3R_12859355_SNP [dm6]	G	A	3.495e^-4	0.853	UPSTREAM CG10126 INTERGENIC
3L	10592093	3L_10592093_SNP [dm3] 3L_10598993_SNP [dm6]	T	G	3.496e^-4	0.853	INTERGENIC
3L	13486150	3L_13486150_SNP [dm3] 3L_13493050_SNP [dm6]	T	G	3.503e^-4	0.853	INTRON Tgi
3R	8676839	3R_8676839_SNP [dm3] 3R_12851117_SNP [dm6]	G	A	3.508e^-4	0.853	UPSTREAM CR44234 INTERGENIC
3L	22966291	3L_22966291_SNP [dm3] 3L_22973191_SNP [dm6]	A	T	3.515e^-4	0.853	INTERGENIC
2L	11238693	2L_11238693_SNP [dm3] 2L_11238693_SNP [dm6]	G	T	3.530e^-4	0.853	INTRON ab
2L	16519831	2L_16519831_SNP [dm3] 2L_16519831_SNP [dm6]	G	A	3.536e^-4	0.853	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	17477384	3R_17477384_SNP [dm3] 3R_21651662_SNP [dm6]	C	T	3.538e^-4	0.853	INTRON E2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5229114	X_5229114_SNP [dm3] X_5335081_SNP [dm6]	G	T	3.538e^-4	0.853	DOWNSTREAM CanB INTERGENIC
3L	3609679	3L_3609679_SNP [dm3] 3L_3609679_SNP [dm6]	A	C	3.539e^-4	0.853	UTR_3_PRIME Eip63E
3R	25539763	3R_25539763_SNP [dm3] 3R_29714041_SNP [dm6]	C	T	3.542e^-4	0.853	UPSTREAM Obp99d & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16457317	2R_16457317_SNP [dm3] 2R_20569812_SNP [dm6]	G	A	3.543e^-4	0.853	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3756124	2R_3756124_SNP [dm3] 2R_7868619_SNP [dm6]	C	T	3.545e^-4	0.853	INTRON Dgk
2R	17296172	2R_17296172_SNP [dm3] 2R_21408667_SNP [dm6]	T	C	3.546e^-4	0.853	INTRON Sdc
3L	9560773	3L_9560773_SNP [dm3] 3L_9567673_SNP [dm6]	A	G	3.548e^-4	0.853	INTRON CG42673
2L	13107392	2L_13107392_SNP [dm3] 2L_13107392_SNP [dm6]	G	T	3.551e^-4	0.853	SYNONYMOUS_CODING CG5142	TF binding site mE1_TFBS_chinmo
3R	10908896	3R_10908896_SNP [dm3] 3R_15083174_SNP [dm6]	A	G	3.559e^-4	0.853	SYNONYMOUS_CODING CG6966
2R	18475370	2R_18475370_SNP [dm3] 2R_22587865_SNP [dm6]	G	C	3.560e^-4	0.853	INTRON dnr1
2L	7416605	2L_7416605_SNP [dm3] 2L_7416605_SNP [dm6]	C	A	3.566e^-4	0.853	INTRON chm	TF binding site BDTNP1_TFBS_dl
3R	17085189	3R_17085189_SNP [dm3] 3R_21259467_SNP [dm6]	A	G	3.572e^-4	0.853	SPLICE_SITE_REGION ETHR INTRON ETHR	TF binding site mE1_TFBS_cad
3R	22526394	3R_22526394_SNP [dm3] 3R_26700672_SNP [dm6]	A	G	3.572e^-4	0.853	SYNONYMOUS_CODING amon
2L	19866024	2L_19866024_DEL [dm3] 2L_19866024_DEL [dm6]	CG	C	3.583e^-4	0.853	UPSTREAM sick INTRON sick	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	5676006	3L_5676006_SNP [dm3] 3L_5682906_SNP [dm6]	T	C	3.591e^-4	0.853	INTRON sif
2R	4905734	2R_4905734_SNP [dm3] 2R_9018229_SNP [dm6]	A	T	3.612e^-4	0.853	DOWNSTREAM CG8170 INTRON CG13747
3L	3936078	3L_3936078_INS [dm3] 3L_3936078_INS [dm6]	C	CCATTGTCTGTATGCTC...	3.615e^-4	0.853	UTR_3_PRIME CG10866 UPSTREAM Eip63F-1 DOWNSTREAM CG10866 & 1 other
3L	10310719	3L_10310719_SNP [dm3] 3L_10317619_SNP [dm6]	G	T	3.617e^-4	0.853	INTERGENIC
3R	8684064	3R_8684064_SNP [dm3] 3R_12858342_SNP [dm6]	A	T	3.621e^-4	0.853	UPSTREAM CG10126 INTRON CG10126
2R	19964282	2R_19964282_SNP [dm3] 2R_24076759_SNP [dm6]	T	A	3.632e^-4	0.853	SYNONYMOUS_CODING Mlp60A DOWNSTREAM Mlp60A	TF binding site mE1_TFBS_cad
2L	13107210	2L_13107210_SNP [dm3] 2L_13107210_SNP [dm6]	A	C	3.644e^-4	0.853	INTRON CG5142
2R	9933334	2R_9933334_SNP [dm3] 2R_14045829_SNP [dm6]	G	A	3.656e^-4	0.853	INTRON mam
2L	11972984	2L_11972984_DEL [dm3] 2L_11972984_DEL [dm6]	ATA	A	3.660e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8690025	3R_8690025_SNP [dm3] 3R_12864303_SNP [dm6]	C	T	3.662e^-4	0.853	INTERGENIC
3R	9295426	3R_9295426_SNP [dm3] 3R_13469704_SNP [dm6]	T	C	3.662e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7361998	X_7361998_SNP [dm3] X_7467965_SNP [dm6]	C	T	3.671e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9408345	2R_9408345_SNP [dm3] 2R_13520840_SNP [dm6]	C	T	3.677e^-4	0.853	UPSTREAM CG13331 INTRON Vmat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18333502	3R_18333502_SNP [dm3] 3R_22507780_SNP [dm6]	A	G	3.684e^-4	0.853	INTRON Octbeta1R
2R	17663279	2R_17663279_SNP [dm3] 2R_21775774_SNP [dm6]	T	G	3.690e^-4	0.853	DOWNSTREAM CG4021 INTERGENIC
X	18724998	X_18724998_SNP [dm3] X_18830965_SNP [dm6]	A	C	3.694e^-4	0.853	SYNONYMOUS_CODING CG7101 DOWNSTREAM CG42450	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15910445	3L_15910445_SNP [dm3] 3L_15917345_SNP [dm6]	A	T	3.696e^-4	0.853	INTRON sff
2L	7793004	2L_7793004_SNP [dm3] 2L_7793004_SNP [dm6]	T	C	3.701e^-4	0.853	SYNONYMOUS_CODING LKR	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	16504141	2L_16504141_SNP [dm3] 2L_16504141_SNP [dm6]	T	A	3.701e^-4	0.853	INTRON Tpr2
X	19506253	X_19506253_SNP [dm3] X_19612220_SNP [dm6]	T	G	3.707e^-4	0.853	DOWNSTREAM CG14207 INTRON Tyler & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13486737	3L_13486737_SNP [dm3] 3L_13493637_SNP [dm6]	A	T	3.709e^-4	0.853	INTRON Tgi	TF binding site mE1_TFBS_cad
X	15649317	X_15649317_SNP [dm3] X_15755284_SNP [dm6]	A	T	3.711e^-4	0.853	SPLICE_SITE_REGION Graf SYNONYMOUS_CODING Graf
2L	6536613	2L_6536613_SNP [dm3] 2L_6536613_SNP [dm6]	A	T	3.712e^-4	0.853	UPSTREAM eya INTRON eya	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	15564130	2R_15564130_SNP [dm3] 2R_19676625_SNP [dm6]	C	T	3.715e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13486736	3L_13486736_SNP [dm3] 3L_13493636_SNP [dm6]	T	A	3.715e^-4	0.853	INTRON Tgi	TF binding site mE1_TFBS_cad
3R	2836786	3R_2836786_SNP [dm3] 3R_7011064_SNP [dm6]	C	T	3.717e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8664745	3R_8664745_SNP [dm3] 3R_12839023_SNP [dm6]	G	A	3.723e^-4	0.853	INTERGENIC
3L	13704041	3L_13704041_SNP [dm3] 3L_13710941_SNP [dm6]	C	A	3.735e^-4	0.853	INTRON bru-3
X	4166575	X_4166575_SNP [dm3] X_4272542_SNP [dm6]	T	C	3.737e^-4	0.853	INTERGENIC
2R	13184380	2R_13184380_SNP [dm3] 2R_17296875_SNP [dm6]	A	T	3.737e^-4	0.853	INTRON mbl
2L	9457745	2L_9457745_SNP [dm3] 2L_9457745_SNP [dm6]	C	T	3.738e^-4	0.853	INTRON numb
3L	15974807	3L_15974807_DEL [dm3] 3L_15981707_DEL [dm6]	TT	T	3.765e^-4	0.853	UTR_3_PRIME CG17027 INTRON brm
X	15347314	X_15347314_SNP [dm3] X_15453281_SNP [dm6]	T	C	3.765e^-4	0.853	UPSTREAM CG11655 DOWNSTREAM Ahcy13 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	7465507	2R_7465507_SNP [dm3] 2R_11578002_SNP [dm6]	G	A	3.774e^-4	0.853	UTR_3_PRIME tou DOWNSTREAM tou
3L	15970280	3L_15970280_SNP [dm3] 3L_15977180_SNP [dm6]	A	C	3.785e^-4	0.853	SYNONYMOUS_CODING CG17029 DOWNSTREAM CG17026 INTRON brm
X	19859398	X_19859398_SNP [dm3] X_19965365_SNP [dm6]	C	T	3.793e^-4	0.853	SYNONYMOUS_CODING Nep3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3870261	2L_3870261_SNP [dm3] 2L_3870261_SNP [dm6]	T	A	3.795e^-4	0.853	SYNONYMOUS_CODING Cep97	TF binding site mE1_TFBS_sens
2L	11008028	2L_11008028_SNP [dm3] 2L_11008028_SNP [dm6]	A	C	3.811e^-4	0.853	SYNONYMOUS_CODING Nup154	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7285161	3R_7285161_SNP [dm3] 3R_11459439_SNP [dm6]	A	G	3.815e^-4	0.853	INTRON CG17230 & 1 other
3R	22742884	3R_22742884_SNP [dm3] 3R_26917162_SNP [dm6]	T	G	3.817e^-4	0.853	INTRON sda
3R	8672737	3R_8672737_SNP [dm3] 3R_12847015_SNP [dm6]	C	T	3.821e^-4	0.853	NON_SYNONYMOUS_CODING beat-Va
2L	11931232	2L_11931232_SNP [dm3] 2L_11931232_SNP [dm6]	G	A	3.824e^-4	0.853	INTERGENIC
X	14958597	X_14958597_SNP [dm3] X_15064564_SNP [dm6]	A	T	3.838e^-4	0.853	UTR_3_PRIME CG5548 DOWNSTREAM opm & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14904648	2R_14904648_SNP [dm3] 2R_19017143_SNP [dm6]	T	G	3.840e^-4	0.853	INTERGENIC
3R	24214828	3R_24214828_SNP [dm3] 3R_28389106_SNP [dm6]	C	A	3.841e^-4	0.853	INTERGENIC
2L	13507505	2L_13507505_SNP [dm3] 2L_13507505_SNP [dm6]	A	G	3.843e^-4	0.853	INTRON B4
3L	13704046	3L_13704046_SNP [dm3] 3L_13710946_SNP [dm6]	T	A	3.849e^-4	0.853	INTRON bru-3
X	13008117	X_13008117_SNP [dm3] X_13114084_SNP [dm6]	G	C	3.851e^-4	0.853	INTERGENIC
2L	12538065	2L_12538065_SNP [dm3] 2L_12538065_SNP [dm6]	G	A	3.861e^-4	0.853	SYNONYMOUS_CODING bun	TF binding site mE1_TFBS_chinmo
3R	2377310	3R_2377310_SNP [dm3] 3R_6551588_SNP [dm6]	C	G	3.863e^-4	0.853	INTRON dpr11
3R	2384588	3R_2384588_SNP [dm3] 3R_6558866_SNP [dm6]	T	C	3.865e^-4	0.853	NON_SYNONYMOUS_CODING CG1137 INTRON dpr11
3L	3111872	3L_3111872_SNP [dm3] 3L_3111872_SNP [dm6]	A	G	3.866e^-4	0.853	SYNONYMOUS_CODING CG45067 UPSTREAM CG45066
3L	15974897	3L_15974897_DEL [dm3] 3L_15981797_DEL [dm6]	AG	A	3.869e^-4	0.853	UTR_3_PRIME CG17027 INTRON brm
3L	1375695	3L_1375695_SNP [dm3] 3L_1375695_SNP [dm6]	C	T	3.870e^-4	0.853	INTRON Ptp61F & 1 other
X	2867687	X_2867687_SNP [dm3] X_2973654_SNP [dm6]	G	T	3.874e^-4	0.853	UTR_5_PRIME rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14876937	2R_14876937_SNP [dm3] 2R_18989432_SNP [dm6]	G	T	3.875e^-4	0.853	START_GAINED tn UTR_5_PRIME tn INTRON tn
3L	9987455	3L_9987455_SNP [dm3] 3L_9994355_SNP [dm6]	G	A	3.882e^-4	0.853	INTRON dpr6
3L	11385179	3L_11385179_SNP [dm3] 3L_11392079_SNP [dm6]	T	G	3.891e^-4	0.853	INTERGENIC
3L	11385181	3L_11385181_SNP [dm3] 3L_11392081_SNP [dm6]	A	C	3.891e^-4	0.853	INTERGENIC
3R	20496113	3R_20496113_SNP [dm3] 3R_24670391_SNP [dm6]	G	A	3.893e^-4	0.853	INTRON slo	TF binding site mE1_TFBS_cad
3L	13486378	3L_13486378_SNP [dm3] 3L_13493278_SNP [dm6]	T	C	3.895e^-4	0.853	INTRON Tgi
3R	8677890	3R_8677890_SNP [dm3] 3R_12852168_SNP [dm6]	G	A	3.897e^-4	0.853	INTERGENIC
3L	14489373	3L_14489373_SNP [dm3] 3L_14496273_SNP [dm6]	C	T	3.904e^-4	0.853	INTRON bbg	TF binding site mE1_TFBS_cad
3L	22978327	3L_22978327_SNP [dm3] 3L_22985227_SNP [dm6]	A	C	3.911e^-4	0.853	INTERGENIC
2R	19575090	2R_19575090_SNP [dm3] 2R_23687567_SNP [dm6]	A	G	3.918e^-4	0.853	UTR_3_PRIME St3 UPSTREAM Pal2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20126006	2R_20126006_SNP [dm3] 2R_24238483_SNP [dm6]	A	T	3.919e^-4	0.853	UPSTREAM CR44827 INTERGENIC
2R	17769276	2R_17769276_SNP [dm3] 2R_21881771_SNP [dm6]	G	A	3.921e^-4	0.853	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_sens
2L	4398264	2L_4398264_SNP [dm3] 2L_4398264_SNP [dm6]	C	T	3.921e^-4	0.853	SYNONYMOUS_CODING l_2_k05819	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7962690	X_7962690_SNP [dm3] X_8068657_SNP [dm6]	C	T	3.933e^-4	0.853	SYNONYMOUS_CODING mys	TF binding site mE1_TFBS_cad
2R	6563253	2R_6563253_SNP [dm3] 2R_10675748_SNP [dm6]	T	C	3.936e^-4	0.853	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11009360	2L_11009360_SNP [dm3] 2L_11009360_SNP [dm6]	C	T	3.936e^-4	0.853	SYNONYMOUS_CODING Nup154 DOWNSTREAM Art8	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26109465	3R_26109465_SNP [dm3] 3R_30283743_SNP [dm6]	G	A	3.944e^-4	0.853	INTRON hdc
3R	3372416	3R_3372416_SNP [dm3] 3R_7546694_SNP [dm6]	A	G	3.968e^-4	0.853	SYNONYMOUS_CODING alpha-Est1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8327602	2L_8327602_SNP [dm3] 2L_8327602_SNP [dm6]	A	T	3.979e^-4	0.853	INTRON CG14275
X	6641022	X_6641022_SNP [dm3] X_6746989_SNP [dm6]	T	G	3.988e^-4	0.853	UPSTREAM CG14439 DOWNSTREAM CR44895 EXON CR44964	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	14388243	3L_14388243_DEL [dm3] 3L_14395143_DEL [dm6]	TG	T	3.998e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	11246556	2L_11246556_SNP [dm3] 2L_11246556_SNP [dm6]	G	T	4.000e^-4	0.853	INTRON ab	TF binding site mE1_TFBS_chinmo
3L	18886613	3L_18886613_SNP [dm3] 3L_18893513_SNP [dm6]	G	C	4.005e^-4	0.853	SYNONYMOUS_CODING CG3902 DOWNSTREAM NijB	TF binding site mE1_TFBS_cad
3R	26088428	3R_26088428_SNP [dm3] 3R_30262706_SNP [dm6]	T	G	4.008e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	5672785	3L_5672785_SNP [dm3] 3L_5679685_SNP [dm6]	A	G	4.014e^-4	0.853	INTRON sif
3R	23601279	3R_23601279_SNP [dm3] 3R_27775557_SNP [dm6]	A	G	4.018e^-4	0.853	INTRON CG34353	TF binding site mE1_TFBS_chinmo
2L	16428928	2L_16428928_SNP [dm3] 2L_16428928_SNP [dm6]	A	G	4.021e^-4	0.853	INTRON CG5888	TF binding site mE1_TFBS_HSA
2L	19406396	2L_19406396_SNP [dm3] 2L_19406396_SNP [dm6]	C	A	4.029e^-4	0.853	INTRON Pax
X	18144768	X_18144768_SNP [dm3] X_18250735_SNP [dm6]	T	G	4.034e^-4	0.853	INTERGENIC
X	3895819	X_3895819_SNP [dm3] X_4001786_SNP [dm6]	G	A	4.036e^-4	0.853	UPSTREAM CR43298 INTERGENIC
3L	14457994	3L_14457994_SNP [dm3] 3L_14464894_SNP [dm6]	G	T	4.038e^-4	0.853	INTRON bbg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11935626	2L_11935626_SNP [dm3] 2L_11935626_SNP [dm6]	T	A	4.039e^-4	0.853	SYNONYMOUS_CODING Or33a UPSTREAM Or33b
3L	13692350	3L_13692350_SNP [dm3] 3L_13699250_SNP [dm6]	T	C	4.055e^-4	0.853	INTRON bru-3
3L	13019895	3L_13019895_DEL [dm3] 3L_13026795_DEL [dm6]	CATA	C	4.057e^-4	0.853	UPSTREAM Zmynd10 INTERGENIC
2R	2753207	2R_2753207_SNP [dm3] 2R_6865702_SNP [dm6]	C	A	4.062e^-4	0.853	INTRON coro	TF binding site mE1_TFBS_HSA
3R	12726404	3R_12726404_SNP [dm3] 3R_16900682_SNP [dm6]	A	G	4.069e^-4	0.853	UPSTREAM iab-8 INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	17472077	3L_17472077_SNP [dm3] 3L_17478977_SNP [dm6]	T	C	4.075e^-4	0.853	UPSTREAM qjt & 1 other INTERGENIC
2L	6100912	2L_6100912_SNP [dm3] 2L_6100912_SNP [dm6]	C	T	4.081e^-4	0.853	INTRON stai	TF binding site BDTNP1_TFBS_dl
3L	11736733	3L_11736733_SNP [dm3] 3L_11743633_SNP [dm6]	A	C	4.081e^-4	0.853	INTRON CG6024	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25656294	3R_25656294_SNP [dm3] 3R_29830572_SNP [dm6]	T	C	4.086e^-4	0.853	INTRON Atg16
3R	12255005	3R_12255005_SNP [dm3] 3R_16429283_SNP [dm6]	T	A	4.101e^-4	0.853	DOWNSTREAM CR45631 INTERGENIC
3R	15303129	3R_15303129_SNP [dm3] 3R_19477407_SNP [dm6]	C	T	4.104e^-4	0.853	INTRON Dys
X	15485180	X_15485180_SNP [dm3] X_15591147_SNP [dm6]	A	T	4.110e^-4	0.853	INTRON CG9220
3R	8676390	3R_8676390_SNP [dm3] 3R_12850668_SNP [dm6]	C	T	4.110e^-4	0.853	EXON CR44234
3R	24485287	3R_24485287_SNP [dm3] 3R_28659565_SNP [dm6]	G	A	4.111e^-4	0.853	INTERGENIC
2L	9547524	2L_9547524_SNP [dm3] 2L_9547524_SNP [dm6]	A	C	4.113e^-4	0.853	DOWNSTREAM jp & 1 other INTERGENIC
X	2917181	X_2917181_SNP [dm3] X_3023148_SNP [dm6]	G	A	4.117e^-4	0.853	INTRON kirre	TF binding site BDTNP1_TFBS_dl
3R	8680215	3R_8680215_SNP [dm3] 3R_12854493_SNP [dm6]	A	C	4.118e^-4	0.853	INTERGENIC
3L	13480612	3L_13480612_SNP [dm3] 3L_13487512_SNP [dm6]	C	T	4.118e^-4	0.853	INTRON Tgi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	7793001	2L_7793001_SNP [dm3] 2L_7793001_SNP [dm6]	A	T	4.120e^-4	0.853	SYNONYMOUS_CODING LKR	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9681624	2L_9681624_SNP [dm3] 2L_9681624_SNP [dm6]	G	C	4.125e^-4	0.853	DOWNSTREAM Pka-C1 INTERGENIC
3R	24131579	3R_24131579_SNP [dm3] 3R_28305857_SNP [dm6]	T	A	4.131e^-4	0.853	INTERGENIC
2R	6147052	2R_6147052_SNP [dm3] 2R_10259547_SNP [dm6]	G	C	4.131e^-4	0.853	SYNONYMOUS_CODING CG12911	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	9163182	3R_9163182_SNP [dm3] 3R_13337460_SNP [dm6]	T	C	4.136e^-4	0.853	UPSTREAM PK2-R1 INTERGENIC
3R	25146015	3R_25146015_SNP [dm3] 3R_29320293_SNP [dm6]	A	T	4.137e^-4	0.853	UPSTREAM Cnx99A INTERGENIC	TF binding site mE1_TFBS_h
3R	19710863	3R_19710863_SNP [dm3] 3R_23885141_SNP [dm6]	G	A	4.140e^-4	0.853	INTRON Pli	TF binding site mE1_TFBS_GATAe
X	18150617	X_18150617_SNP [dm3] X_18256584_SNP [dm6]	T	G	4.145e^-4	0.853	DOWNSTREAM CR45613 INTERGENIC
3R	12356551	3R_12356551_SNP [dm3] 3R_16530829_SNP [dm6]	C	T	4.154e^-4	0.853	INTRON CG42342	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	10928252	2L_10928252_SNP [dm3] 2L_10928252_SNP [dm6]	C	T	4.157e^-4	0.853	INTRON dpr2
2R	9411293	2R_9411293_SNP [dm3] 2R_13523788_SNP [dm6]	T	C	4.168e^-4	0.853	DOWNSTREAM CG13331 INTRON Vmat
2L	9762822	2L_9762822_SNP [dm3] 2L_9762822_SNP [dm6]	C	A	4.171e^-4	0.853	SYNONYMOUS_CODING Taf11 UPSTREAM und DOWNSTREAM zf30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	17503541	3R_17503541_SNP [dm3] 3R_21677819_SNP [dm6]	C	T	4.173e^-4	0.853	INTRON CG31176
2L	13377424	2L_13377424_SNP [dm3] 2L_13377424_SNP [dm6]	G	A	4.185e^-4	0.853	SYNONYMOUS_CODING CG9302	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2906513	X_2906513_SNP [dm3] X_3012480_SNP [dm6]	T	A	4.188e^-4	0.853	INTRON kirre
X	5538198	X_5538198_SNP [dm3] X_5644165_SNP [dm6]	G	A	4.190e^-4	0.853	INTRON CG42492
2L	17264966	2L_17264966_SNP [dm3] 2L_17264966_SNP [dm6]	T	G	4.199e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2R	6277220	2R_6277220_SNP [dm3] 2R_10389715_SNP [dm6]	T	C	4.204e^-4	0.853	INTRON CG42732
2R	11872378	2R_11872378_SNP [dm3] 2R_15984873_SNP [dm6]	C	T	4.206e^-4	0.853	INTRON Strn-Mlck
2L	10280525	2L_10280525_SNP [dm3] 2L_10280525_SNP [dm6]	G	A	4.212e^-4	0.853	SYNONYMOUS_CODING CG34043
2L	11973214	2L_11973214_SNP [dm3] 2L_11973214_SNP [dm6]	G	A	4.217e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2421775	3L_2421775_SNP [dm3] 3L_2421775_SNP [dm6]	G	T	4.217e^-4	0.853	INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14896182	3R_14896182_SNP [dm3] 3R_19070460_SNP [dm6]	A	G	4.217e^-4	0.853	INTRON cdi
2L	20869022	2L_20869022_SNP [dm3] 2L_20869022_SNP [dm6]	T	G	4.221e^-4	0.853	UPSTREAM CG14401 INTRON CG31675
2L	6100827	2L_6100827_SNP [dm3] 2L_6100827_SNP [dm6]	T	C	4.226e^-4	0.853	INTRON stai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15060306	3R_15060306_SNP [dm3] 3R_19234584_SNP [dm6]	A	G	4.231e^-4	0.853	INTRON unc79
3L	1781637	3L_1781637_SNP [dm3] 3L_1781637_SNP [dm6]	T	G	4.232e^-4	0.853	SYNONYMOUS_CODING alpha-Spec	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20521353	X_20521353_SNP [dm3] X_20650326_SNP [dm6]	T	G	4.237e^-4	0.853	INTERGENIC
X	2906615	X_2906615_SNP [dm3] X_3012582_SNP [dm6]	C	G	4.240e^-4	0.853	INTRON kirre
2R	9267787	2R_9267787_SNP [dm3] 2R_13380282_SNP [dm6]	A	C	4.256e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8679144	3R_8679144_SNP [dm3] 3R_12853422_SNP [dm6]	C	T	4.262e^-4	0.853	INTERGENIC
3L	2777212	3L_2777212_SNP [dm3] 3L_2777212_SNP [dm6]	A	G	4.264e^-4	0.853	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4017901	2L_4017901_SNP [dm3] 2L_4017901_SNP [dm6]	A	C	4.269e^-4	0.853	INTERGENIC
2L	9691911	2L_9691911_SNP [dm3] 2L_9691911_SNP [dm6]	A	G	4.271e^-4	0.853	INTRON Pka-C1
3R	6159977	3R_6159977_SNP [dm3] 3R_10334255_SNP [dm6]	T	C	4.277e^-4	0.853	SYNONYMOUS_CODING sle	TF binding site mE1_TFBS_sens
2L	7320756	2L_7320756_DEL [dm3] 2L_7320756_DEL [dm6]	CCTCAAA	C	4.300e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_inv
2R	6563248	2R_6563248_INS [dm3] 2R_10675743_INS [dm6]	T	TATTT	4.305e^-4	0.853	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6729970	2R_6729970_SNP [dm3] 2R_10842465_SNP [dm6]	G	A	4.306e^-4	0.853	SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15409787	3R_15409787_SNP [dm3] 3R_19584065_SNP [dm6]	C	G	4.310e^-4	0.853	INTRON Dys
3L	15784074	3L_15784074_SNP [dm3] 3L_15790974_SNP [dm6]	C	T	4.319e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20127462	3R_20127462_SNP [dm3] 3R_24301740_SNP [dm6]	G	A	4.324e^-4	0.853	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	19501675	X_19501675_SNP [dm3] X_19607642_SNP [dm6]	A	T	4.335e^-4	0.853	INTRON CG14207	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
3L	1839479	3L_1839479_SNP [dm3] 3L_1839479_SNP [dm6]	T	C	4.337e^-4	0.853	DOWNSTREAM Cpr62Bc INTERGENIC
3L	7969311	3L_7969311_SNP [dm3] 3L_7976211_SNP [dm6]	G	A	4.346e^-4	0.853	UPSTREAM CG8209 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk
2R	11295235	2R_11295235_SNP [dm3] 2R_15407730_SNP [dm6]	A	C	4.351e^-4	0.853	INTRON CG43729
3R	2760208	3R_2760208_SNP [dm3] 3R_6934486_SNP [dm6]	G	A	4.351e^-4	0.853	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20228782	2R_20228782_SNP [dm3] 2R_24341259_SNP [dm6]	A	G	4.359e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9452856	2L_9452856_DEL [dm3] 2L_9452856_DEL [dm6]	TGTGCG	T	4.372e^-4	0.853	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9313227	3R_9313227_SNP [dm3] 3R_13487505_SNP [dm6]	C	A	4.375e^-4	0.853	INTERGENIC
2R	19501432	2R_19501432_SNP [dm3] 2R_23613909_SNP [dm6]	G	A	4.391e^-4	0.853	INTRON CG17664 & 1 other
2R	9408338	2R_9408338_SNP [dm3] 2R_13520833_SNP [dm6]	A	G	4.399e^-4	0.853	UPSTREAM CG13331 INTRON Vmat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2802783	3L_2802783_SNP [dm3] 3L_2802783_SNP [dm6]	C	T	4.409e^-4	0.853	INTRON CG43444
2L	5327930	2L_5327930_SNP [dm3] 2L_5327930_SNP [dm6]	A	T	4.411e^-4	0.853	UTR_3_PRIME cype DOWNSTREAM CG14022 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	12199763	3R_12199763_SNP [dm3] 3R_16374041_SNP [dm6]	C	T	4.415e^-4	0.853	DOWNSTREAM ss INTERGENIC
3R	12199767	3R_12199767_SNP [dm3] 3R_16374045_SNP [dm6]	T	A	4.415e^-4	0.853	DOWNSTREAM ss INTERGENIC
3L	18454113	3L_18454113_SNP [dm3] 3L_18461013_SNP [dm6]	T	C	4.419e^-4	0.853	UTR_5_PRIME CG32196 DOWNSTREAM CG4306	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
2L	16800595	2L_16800595_SNP [dm3] 2L_16800595_SNP [dm6]	T	G	4.422e^-4	0.853	INTRON Ugt36Bc	TF binding site mE1_TFBS_cad
3L	11385168	3L_11385168_SNP [dm3] 3L_11392068_SNP [dm6]	G	A	4.424e^-4	0.853	INTERGENIC
3R	8679853	3R_8679853_SNP [dm3] 3R_12854131_SNP [dm6]	T	A	4.435e^-4	0.853	INTERGENIC
2R	13341251	2R_13341251_SNP [dm3] 2R_17453746_SNP [dm6]	T	G	4.439e^-4	0.853	INTRON CG10764
2R	13341256	2R_13341256_SNP [dm3] 2R_17453751_SNP [dm6]	G	C	4.439e^-4	0.853	INTRON CG10764
3R	19071487	3R_19071487_SNP [dm3] 3R_23245765_SNP [dm6]	A	C	4.458e^-4	0.853	SPLICE_SITE_REGION CG4467 INTRON CG4467
3R	12255045	3R_12255045_SNP [dm3] 3R_16429323_SNP [dm6]	T	G	4.462e^-4	0.853	DOWNSTREAM CR45631 INTERGENIC
3L	16443388	3L_16443388_SNP [dm3] 3L_16450288_SNP [dm6]	T	C	4.469e^-4	0.853	SYNONYMOUS_CODING dsx-c73A INTRON CG33158	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17265198	2L_17265198_SNP [dm3] 2L_17265198_SNP [dm6]	T	C	4.480e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3R	2788046	3R_2788046_SNP [dm3] 3R_6962324_SNP [dm6]	A	T	4.481e^-4	0.853	INTRON Antp	TF binding site BDTNP1_TFBS_dl
3L	16981203	3L_16981203_SNP [dm3] 3L_16988103_SNP [dm6]	A	T	4.485e^-4	0.853	INTRON Exn
3R	12255002	3R_12255002_SNP [dm3] 3R_16429280_SNP [dm6]	G	T	4.487e^-4	0.853	DOWNSTREAM CR45631 INTERGENIC
3R	27076666	3R_27076666_SNP [dm3] 3R_31250944_SNP [dm6]	A	G	4.496e^-4	0.853	INTRON qless	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	13172794	2L_13172794_SNP [dm3] 2L_13172794_SNP [dm6]	T	C	4.502e^-4	0.853	SYNONYMOUS_CODING Sfmbt	TF binding site mE1_TFBS_cad
3R	22989433	3R_22989433_SNP [dm3] 3R_27163711_SNP [dm6]	A	C	4.504e^-4	0.853	DOWNSTREAM CG5909 & 1 other INTRON ppk31
X	16025935	X_16025935_SNP [dm3] X_16131902_SNP [dm6]	G	A	4.507e^-4	0.853	INTRON disco-r
2L	11883757	2L_11883757_SNP [dm3] 2L_11883757_SNP [dm6]	G	A	4.509e^-4	0.853	INTRON Pde1c
2L	5237404	2L_5237404_SNP [dm3] 2L_5237404_SNP [dm6]	G	A	4.519e^-4	0.853	UPSTREAM tkv INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2R	18515860	2R_18515860_SNP [dm3] 2R_22628355_SNP [dm6]	G	T	4.522e^-4	0.853	SPLICE_SITE_REGION CG33143 INTRON CG33143
3L	11662354	3L_11662354_SNP [dm3] 3L_11669254_SNP [dm6]	T	A	4.523e^-4	0.853	INTRON CG32085
2R	17646168	2R_17646168_SNP [dm3] 2R_21758663_SNP [dm6]	A	T	4.528e^-4	0.853	DOWNSTREAM Grx-1 INTERGENIC
3R	25930328	3R_25930328_SNP [dm3] 3R_30104606_SNP [dm6]	C	T	4.531e^-4	0.853	NON_SYNONYMOUS_CODING sima UTR_5_PRIME sima INTRON sima
3R	14801271	3R_14801271_SNP [dm3] 3R_18975549_SNP [dm6]	T	C	4.536e^-4	0.853	SYNONYMOUS_CODING CG42613 UTR_3_PRIME CG42613 & 1 other
3R	8670167	3R_8670167_INS [dm3] 3R_12844445_INS [dm6]	A	GAAATGAAAT	4.541e^-4	0.853	INTRON beat-Va
X	2375730	X_2375730_SNP [dm3] X_2481697_SNP [dm6]	G	A	4.544e^-4	0.853	SYNONYMOUS_CODING trol
3R	12254969	3R_12254969_SNP [dm3] 3R_16429247_SNP [dm6]	C	T	4.545e^-4	0.853	DOWNSTREAM CR45631 INTERGENIC
3R	19557694	3R_19557694_SNP [dm3] 3R_23731972_SNP [dm6]	G	A	4.548e^-4	0.853	SYNONYMOUS_CODING Rpn9 DOWNSTREAM CG10365	TF binding site mE1_TFBS_sens
3R	19557703	3R_19557703_SNP [dm3] 3R_23731981_SNP [dm6]	C	T	4.548e^-4	0.853	SPLICE_SITE_REGION Rpn9 SYNONYMOUS_CODING Rpn9 DOWNSTREAM CG10365	TF binding site mE1_TFBS_sens
3R	19557707	3R_19557707_SNP [dm3] 3R_23731985_SNP [dm6]	C	T	4.548e^-4	0.853	DOWNSTREAM CG10365 INTRON Rpn9	TF binding site mE1_TFBS_sens
3R	19557708	3R_19557708_SNP [dm3] 3R_23731986_SNP [dm6]	A	C	4.548e^-4	0.853	DOWNSTREAM CG10365 INTRON Rpn9	TF binding site mE1_TFBS_sens
3R	11964907	3R_11964907_SNP [dm3] 3R_16139185_SNP [dm6]	A	G	4.549e^-4	0.853	INTRON Sb
2L	10964440	2L_10964440_SNP [dm3] 2L_10964440_SNP [dm6]	T	G	4.553e^-4	0.853	UPSTREAM dpr2 DOWNSTREAM CG33129 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
2R	6213524	2R_6213524_SNP [dm3] 2R_10326019_SNP [dm6]	A	T	4.555e^-4	0.853	INTRON CG42732
2R	18192580	2R_18192580_SNP [dm3] 2R_22305075_SNP [dm6]	G	A	4.556e^-4	0.853	INTRON wdp
3L	1850569	3L_1850569_SNP [dm3] 3L_1850569_SNP [dm6]	T	C	4.564e^-4	0.853	DOWNSTREAM CG13936 INTERGENIC
3R	15377310	3R_15377310_SNP [dm3] 3R_19551588_SNP [dm6]	A	C	4.574e^-4	0.853	INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11650214	3L_11650214_SNP [dm3] 3L_11657114_SNP [dm6]	G	A	4.578e^-4	0.853	DOWNSTREAM mir-274 INTRON CG32085
2R	8934019	2R_8934019_SNP [dm3] 2R_13046514_SNP [dm6]	T	G	4.579e^-4	0.853	UTR_3_PRIME CG13323 DOWNSTREAM CG13323
2R	18275912	2R_18275912_SNP [dm3] 2R_22388407_SNP [dm6]	T	C	4.579e^-4	0.853	DOWNSTREAM CR44757 INTRON CG13506
3R	9268150	3R_9268150_SNP [dm3] 3R_13442428_SNP [dm6]	G	A	4.599e^-4	0.853	DOWNSTREAM CR45679 INTERGENIC
2R	10170064	2R_10170064_SNP [dm3] 2R_14282559_SNP [dm6]	G	T	4.604e^-4	0.853	INTRON Ih
3R	8679862	3R_8679862_SNP [dm3] 3R_12854140_SNP [dm6]	A	T	4.605e^-4	0.853	INTERGENIC
2L	1706821	2L_1706821_SNP [dm3] 2L_1706821_SNP [dm6]	A	T	4.606e^-4	0.853	UTR_3_PRIME cpb DOWNSTREAM CG17660 & 1 other
3R	8874022	3R_8874022_SNP [dm3] 3R_13048300_SNP [dm6]	A	T	4.608e^-4	0.853	DOWNSTREAM Hsc70-2 INTRON CG31157
2L	11930621	2L_11930621_SNP [dm3] 2L_11930621_SNP [dm6]	A	G	4.614e^-4	0.853	INTERGENIC
2L	16800591	2L_16800591_SNP [dm3] 2L_16800591_SNP [dm6]	G	A	4.619e^-4	0.853	INTRON Ugt36Bc	TF binding site mE1_TFBS_cad
3R	25657396	3R_25657396_SNP [dm3] 3R_29831674_SNP [dm6]	C	T	4.628e^-4	0.853	INTRON Atg16
3R	25657401	3R_25657401_SNP [dm3] 3R_29831679_SNP [dm6]	G	A	4.628e^-4	0.853	INTRON Atg16
3R	24209722	3R_24209722_SNP [dm3] 3R_28384000_SNP [dm6]	C	T	4.639e^-4	0.853	INTERGENIC
2R	15107851	2R_15107851_SNP [dm3] 2R_19220346_SNP [dm6]	G	A	4.646e^-4	0.853	INTRON hppy
3R	18425961	3R_18425961_SNP [dm3] 3R_22600239_SNP [dm6]	A	T	4.652e^-4	0.853	SYNONYMOUS_CODING Efa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16083495	3L_16083495_SNP [dm3] 3L_16090395_SNP [dm6]	A	G	4.655e^-4	0.853	UPSTREAM ClC-c & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	4675056	2L_4675056_SNP [dm3] 2L_4675056_SNP [dm6]	A	G	4.656e^-4	0.853	INTERGENIC
2L	10939008	2L_10939008_SNP [dm3] 2L_10939008_SNP [dm6]	G	C	4.658e^-4	0.853	INTRON dpr2
2R	18475312	2R_18475312_SNP [dm3] 2R_22587807_SNP [dm6]	C	A	4.659e^-4	0.853	INTRON dnr1
3L	16788420	3L_16788420_SNP [dm3] 3L_16795320_SNP [dm6]	G	C	4.660e^-4	0.853	SYNONYMOUS_CODING CG9674	TF binding site mE1_TFBS_cad
3R	4971951	3R_4971951_SNP [dm3] 3R_9146229_SNP [dm6]	A	C	4.670e^-4	0.853	INTRON pum	TF binding site BDTNP1_TFBS_twi
2R	14460863	2R_14460863_DEL [dm3] 2R_18573358_DEL [dm6]	GAAA	G	4.673e^-4	0.853	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10682472	3R_10682472_INS [dm3] 3R_14856750_INS [dm6]	T	TT	4.682e^-4	0.853	INTRON btsz
3R	12711921	3R_12711921_SNP [dm3] 3R_16886199_SNP [dm6]	G	A	4.687e^-4	0.853	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	24831202	3R_24831202_SNP [dm3] 3R_29005480_SNP [dm6]	A	G	4.700e^-4	0.853	INTRON wat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6213924	2R_6213924_SNP [dm3] 2R_10326419_SNP [dm6]	C	T	4.700e^-4	0.853	SYNONYMOUS_CODING CG42732 INTRON CG42732
2R	15394461	2R_15394461_SNP [dm3] 2R_19506956_SNP [dm6]	T	C	4.707e^-4	0.853	UPSTREAM tRNA:H:56E INTERGENIC
3R	9314105	3R_9314105_SNP [dm3] 3R_13488383_SNP [dm6]	T	C	4.708e^-4	0.853	INTERGENIC
2L	11621354	2L_11621354_SNP [dm3] 2L_11621354_SNP [dm6]	G	T	4.709e^-4	0.853	START_GAINED kek2 UTR_5_PRIME kek2
2R	4005954	2R_4005954_SNP [dm3] 2R_8118449_SNP [dm6]	T	C	4.724e^-4	0.853	SYNONYMOUS_CODING Asap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17049149	3L_17049149_SNP [dm3] 3L_17056049_SNP [dm6]	T	C	4.733e^-4	0.853	DOWNSTREAM rogdi INTRON CG7724
X	5879133	X_5879133_SNP [dm3] X_5985100_SNP [dm6]	A	G	4.747e^-4	0.853	NON_SYNONYMOUS_CODING Grip	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10124678	2L_10124678_SNP [dm3] 2L_10124678_SNP [dm6]	A	C	4.749e^-4	0.853	INTRON CG44153 & 1 other
3R	9275503	3R_9275503_SNP [dm3] 3R_13449781_SNP [dm6]	T	C	4.754e^-4	0.853	UPSTREAM CG14372 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15962945	3L_15962945_SNP [dm3] 3L_15969845_SNP [dm6]	G	T	4.757e^-4	0.853	UTR_3_PRIME CG10516 DOWNSTREAM brm	TF binding site mE1_TFBS_sbb
2L	11849866	2L_11849866_SNP [dm3] 2L_11849866_SNP [dm6]	G	A	4.757e^-4	0.853	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2L	11874927	2L_11874927_SNP [dm3] 2L_11874927_SNP [dm6]	G	A	4.767e^-4	0.853	UPSTREAM Pde1c INTRON Pde1c
2R	17486818	2R_17486818_SNP [dm3] 2R_21599313_SNP [dm6]	A	C	4.768e^-4	0.853	INTERGENIC
3R	12614537	3R_12614537_SNP [dm3] 3R_16788815_SNP [dm6]	A	T	4.773e^-4	0.853	SYNONYMOUS_CODING Glut3	TF binding site mE1_TFBS_chinmo
3L	8194743	3L_8194743_SNP [dm3] 3L_8201643_SNP [dm6]	C	A	4.775e^-4	0.853	SYNONYMOUS_CODING CG7366	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19710877	3R_19710877_DEL [dm3] 3R_23885155_DEL [dm6]	AA	A	4.784e^-4	0.853	INTRON Pli	TF binding site mE1_TFBS_GATAe
X	4522463	X_4522463_SNP [dm3] X_4628430_SNP [dm6]	G	C	4.791e^-4	0.853	NON_SYNONYMOUS_CODING CG12184	TF binding site mE1_TFBS_sens
X	2907275	X_2907275_SNP [dm3] X_3013242_SNP [dm6]	T	A	4.794e^-4	0.853	INTRON kirre
3R	12255076	3R_12255076_SNP [dm3] 3R_16429354_SNP [dm6]	T	A	4.798e^-4	0.853	DOWNSTREAM CR45631 INTERGENIC
2R	17905648	2R_17905648_SNP [dm3] 2R_22018143_SNP [dm6]	G	A	4.798e^-4	0.853	INTRON CG34370
2L	10155348	2L_10155348_SNP [dm3] 2L_10155348_SNP [dm6]	A	G	4.808e^-4	0.853	UTR_3_PRIME CG4839 INTRON CG44153
2R	19113479	2R_19113479_SNP [dm3] 2R_23225956_SNP [dm6]	G	A	4.810e^-4	0.853	INTERGENIC
X	985397	X_985397_INS [dm3] X_1091364_INS [dm6]	A	AAACGCATTGA...	4.811e^-4	0.853	INTRON CG3655
2R	4048640	2R_4048640_SNP [dm3] 2R_8161135_SNP [dm6]	C	T	4.822e^-4	0.853	UTR_5_PRIME CG8708 DOWNSTREAM RagC-D INTRON CG8708
3L	7626610	3L_7626610_SNP [dm3] 3L_7633510_SNP [dm6]	G	C	4.822e^-4	0.853	UTR_5_PRIME CG33275 INTRON CG33275
3R	19557738	3R_19557738_SNP [dm3] 3R_23732016_SNP [dm6]	A	T	4.826e^-4	0.853	DOWNSTREAM CG10365 INTRON Rpn9	TF binding site mE1_TFBS_sens
3R	19557744	3R_19557744_SNP [dm3] 3R_23732022_SNP [dm6]	T	C	4.826e^-4	0.853	DOWNSTREAM CG10365 INTRON Rpn9	TF binding site mE1_TFBS_sens
2L	11699929	2L_11699929_SNP [dm3] 2L_11699929_SNP [dm6]	T	A	4.841e^-4	0.853	INTERGENIC
3L	14111136	3L_14111136_INS [dm3] 3L_14118036_INS [dm6]	G	GTCTG	4.842e^-4	0.853	INTRON Sox21b
2L	4657868	2L_4657868_SNP [dm3] 2L_4657868_SNP [dm6]	C	T	4.845e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	23233381	3R_23233381_SNP [dm3] 3R_27407659_SNP [dm6]	T	G	4.854e^-4	0.853	INTRON side
X	10969936	X_10969936_SNP [dm3] X_11075903_SNP [dm6]	C	G	4.857e^-4	0.853	NON_SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
3R	23216594	3R_23216594_SNP [dm3] 3R_27390872_SNP [dm6]	T	A	4.858e^-4	0.853	INTRON side
2L	6407654	2L_6407654_SNP [dm3] 2L_6407654_SNP [dm6]	T	C	4.863e^-4	0.853	INTRON CG42368
3R	8668676	3R_8668676_SNP [dm3] 3R_12842954_SNP [dm6]	C	T	4.864e^-4	0.853	INTRON beat-Va
2R	18584568	2R_18584568_SNP [dm3] 2R_22697063_SNP [dm6]	T	A	4.868e^-4	0.853	SYNONYMOUS_CODING robo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	5229194	X_5229194_SNP [dm3] X_5335161_SNP [dm6]	A	G	4.870e^-4	0.853	DOWNSTREAM CanB INTERGENIC
3R	3370875	3R_3370875_SNP [dm3] 3R_7545153_SNP [dm6]	T	C	4.877e^-4	0.853	UTR_3_PRIME alpha-Est2 DOWNSTREAM alpha-Est1

By genomic position
Variant impact
Gene name

mn_RespHexanol_0_3 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results