DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.136e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.049314
In_2L_t	0.003264
In_3R_Mo	0.044056

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	9.2656	0.0097

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1865 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	19081248	3L_19081248_SNP [dm3] 3L_19088148_SNP [dm6]	C	A	2.384e^-6	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	19081282	3L_19081282_SNP [dm3] 3L_19088182_SNP [dm6]	T	G	2.845e^-6	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4280585	2L_4280585_SNP [dm3] 2L_4280585_SNP [dm6]	G	A	3.569e^-6	0.986	INTRON Art2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8283163	2L_8283163_SNP [dm3] 2L_8283163_SNP [dm6]	G	T	3.968e^-6	0.986	INTRON Btk29A
3L	8319777	3L_8319777_SNP [dm3] 3L_8326677_SNP [dm6]	C	T	4.553e^-6	0.986	INTRON CG34461	TF binding site mE1_TFBS_cad
3L	3294191	3L_3294191_SNP [dm3] 3L_3294191_SNP [dm6]	C	T	4.584e^-6	0.986	UPSTREAM CG12009 INTRON CG12009
3L	19081109	3L_19081109_SNP [dm3] 3L_19088009_SNP [dm6]	A	C	5.177e^-6	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	4295762	3R_4295762_SNP [dm3] 3R_8470040_SNP [dm6]	G	T	5.629e^-6	0.986	INTRON CG45263	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6276869	3R_6276869_SNP [dm3] 3R_10451147_SNP [dm6]	G	T	6.020e^-6	0.986	INTERGENIC
2L	6305428	2L_6305428_SNP [dm3] 2L_6305428_SNP [dm6]	T	G	6.112e^-6	0.986	INTRON Ddr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3881481	3L_3881481_SNP [dm3] 3L_3881481_SNP [dm6]	G	A	6.413e^-6	0.986	INTERGENIC
2L	6423215	2L_6423215_SNP [dm3] 2L_6423215_SNP [dm6]	A	T	8.826e^-6	0.986	UTR_5_PRIME Tig
2L	8283355	2L_8283355_SNP [dm3] 2L_8283355_SNP [dm6]	C	A	8.841e^-6	0.986	INTRON Btk29A
3L	9300660	3L_9300660_DEL [dm3] 3L_9307560_DEL [dm6]	AA	A	9.185e^-6	0.986	INTERGENIC
2L	12672075	2L_12672075_SNP [dm3] 2L_12672075_SNP [dm6]	T	G	1.002e^-5	0.986	INTRON pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
X	16078963	X_16078963_SNP [dm3] X_16184930_SNP [dm6]	T	C	1.163e^-5	0.986	INTERGENIC
3R	8804588	3R_8804588_SNP [dm3] 3R_12978866_SNP [dm6]	A	C	1.176e^-5	0.986	INTRON CG7091
3R	16214705	3R_16214705_SNP [dm3] 3R_20388983_SNP [dm6]	G	A	1.203e^-5	0.986	INTRON Gfrl
X	9988163	X_9988163_SNP [dm3] X_10094130_SNP [dm6]	T	C	1.305e^-5	0.986	INTRON RhoU
3L	19081746	3L_19081746_SNP [dm3] 3L_19088646_SNP [dm6]	G	A	1.377e^-5	0.986	INTERGENIC
3L	1133344	3L_1133344_SNP [dm3] 3L_1133344_SNP [dm6]	C	T	1.469e^-5	0.986	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2L	9682242	2L_9682242_SNP [dm3] 2L_9682242_SNP [dm6]	C	A	1.473e^-5	0.986	DOWNSTREAM Pka-C1 INTERGENIC
3L	6550666	3L_6550666_SNP [dm3] 3L_6557566_SNP [dm6]	A	T	1.479e^-5	0.986	INTRON CG18769
3R	16213060	3R_16213060_SNP [dm3] 3R_20387338_SNP [dm6]	C	A	1.554e^-5	0.986	INTRON Gfrl
3R	13918482	3R_13918482_SNP [dm3] 3R_18092760_SNP [dm6]	A	G	1.580e^-5	0.986	INTRON sr	TF binding site BDTNP1_TFBS_twi
2R	20256646	2R_20256646_SNP [dm3] 2R_24369123_SNP [dm6]	T	C	1.738e^-5	0.986	INTRON bs & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_Trl
2L	5120102	2L_5120102_SNP [dm3] 2L_5120102_SNP [dm6]	A	G	1.777e^-5	0.986	INTRON Msp300
2R	16992737	2R_16992737_SNP [dm3] 2R_21105232_SNP [dm6]	A	G	1.833e^-5	0.986	INTRON ktub	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7649511	2R_7649511_SNP [dm3] 2R_11762006_SNP [dm6]	C	T	1.839e^-5	0.986	INTRON ths
3R	13573603	3R_13573603_SNP [dm3] 3R_17747881_SNP [dm6]	C	A	1.891e^-5	0.986	DOWNSTREAM TyrRII INTERGENIC
X	5495954	X_5495954_SNP [dm3] X_5601921_SNP [dm6]	C	T	1.989e^-5	0.986	INTRON Vsx1	TF binding site BDTNP1_TFBS_dl
2L	1437070	2L_1437070_SNP [dm3] 2L_1437070_SNP [dm6]	C	A	2.002e^-5	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16401412	2R_16401412_SNP [dm3] 2R_20513907_SNP [dm6]	G	T	2.012e^-5	0.986	UPSTREAM CG13426 INTERGENIC
2L	6715604	2L_6715604_SNP [dm3] 2L_6715604_SNP [dm6]	A	G	2.098e^-5	0.986	INTRON AkhR
2R	11829489	2R_11829489_SNP [dm3] 2R_15941984_SNP [dm6]	C	A	2.138e^-5	0.986	UPSTREAM CG8299 & 1 other INTERGENIC
X	2548752	X_2548752_DEL [dm3] X_2654719_DEL [dm6]	AAATTACTAA	A	2.232e^-5	0.986	INTRON sgg
3R	16213112	3R_16213112_SNP [dm3] 3R_20387390_SNP [dm6]	C	A	2.249e^-5	0.986	INTRON Gfrl
3L	2545311	3L_2545311_SNP [dm3] 3L_2545311_SNP [dm6]	C	T	2.275e^-5	0.986	INTRON Spn
3R	16213061	3R_16213061_SNP [dm3] 3R_20387339_SNP [dm6]	A	T	2.319e^-5	0.986	INTRON Gfrl
3L	9536659	3L_9536659_SNP [dm3] 3L_9543559_SNP [dm6]	G	A	2.374e^-5	0.986	SYNONYMOUS_CODING Ir67a
2R	14265681	2R_14265681_SNP [dm3] 2R_18378176_SNP [dm6]	G	C	2.442e^-5	0.986	EXON CR42736	TF binding site BDTNP1_TFBS_twi
2R	9123340	2R_9123340_SNP [dm3] 2R_13235835_SNP [dm6]	A	G	2.489e^-5	0.986	UPSTREAM CG4676 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13918501	3R_13918501_SNP [dm3] 3R_18092779_SNP [dm6]	T	C	2.667e^-5	0.986	INTRON sr	TF binding site BDTNP1_TFBS_twi
3R	26647054	3R_26647054_SNP [dm3] 3R_30821332_SNP [dm6]	A	T	2.768e^-5	0.986	INTRON cindr	TF binding site BDTNP1_TFBS_z
3R	26647055	3R_26647055_SNP [dm3] 3R_30821333_SNP [dm6]	T	G	2.768e^-5	0.986	INTRON cindr	TF binding site BDTNP1_TFBS_z
2R	6544046	2R_6544046_SNP [dm3] 2R_10656541_SNP [dm6]	G	A	2.816e^-5	0.986	DOWNSTREAM CR44452 INTERGENIC
3L	19081773	3L_19081773_SNP [dm3] 3L_19088673_SNP [dm6]	T	A	2.839e^-5	0.986	INTERGENIC
2R	6544015	2R_6544015_SNP [dm3] 2R_10656510_SNP [dm6]	T	A	2.849e^-5	0.986	DOWNSTREAM CR44452 INTERGENIC
3L	3400763	3L_3400763_SNP [dm3] 3L_3400763_SNP [dm6]	G	T	2.853e^-5	0.986	DOWNSTREAM sty INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1399069	3L_1399069_SNP [dm3] 3L_1399069_SNP [dm6]	G	C	2.887e^-5	0.986	DOWNSTREAM tRNA:E4:62Ac & 1 other INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_sens
2L	2852375	2L_2852375_SNP [dm3] 2L_2852375_SNP [dm6]	G	C	2.922e^-5	0.986	INTRON CG3104
X	8779393	X_8779393_SNP [dm3] X_8885360_SNP [dm6]	G	T	3.028e^-5	0.986	INTRON Moe
3R	13624841	3R_13624841_SNP [dm3] 3R_17799119_SNP [dm6]	C	G	3.100e^-5	0.986	NON_SYNONYMOUS_CODING CG17803 UPSTREAM CG7379
X	2389380	X_2389380_SNP [dm3] X_2495347_SNP [dm6]	C	T	3.170e^-5	0.986	INTRON trol	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11224131	2R_11224131_SNP [dm3] 2R_15336626_SNP [dm6]	G	T	3.213e^-5	0.986	INTRON Hr51	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	20980890	3R_20980890_SNP [dm3] 3R_25155168_SNP [dm6]	T	G	3.301e^-5	0.986	INTERGENIC
2L	10836962	2L_10836962_SNP [dm3] 2L_10836962_SNP [dm6]	T	G	3.317e^-5	0.986	DOWNSTREAM CG6700 INTRON Nos
X	2600533	X_2600533_SNP [dm3] X_2706500_SNP [dm6]	T	G	3.327e^-5	0.986	SYNONYMOUS_CODING CG2680 DOWNSTREAM eIF2B-beta	TF binding site mE1_TFBS_cad
3R	13465491	3R_13465491_SNP [dm3] 3R_17639769_SNP [dm6]	G	A	3.333e^-5	0.986	DOWNSTREAM CR45222 INTRON CG43175
3R	14036240	3R_14036240_SNP [dm3] 3R_18210518_SNP [dm6]	G	T	3.360e^-5	0.986	INTRON CG7985
3L	2980734	3L_2980734_SNP [dm3] 3L_2980734_SNP [dm6]	C	T	3.367e^-5	0.986	UPSTREAM CG2107 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3379802	2L_3379802_SNP [dm3] 2L_3379802_SNP [dm6]	A	G	3.375e^-5	0.986	INTERGENIC
3R	6276969	3R_6276969_SNP [dm3] 3R_10451247_SNP [dm6]	C	T	3.426e^-5	0.986	INTERGENIC
X	2485884	X_2485884_SNP [dm3] X_2591851_SNP [dm6]	C	T	3.581e^-5	0.986	UPSTREAM egh INTRON egh
3R	4903041	3R_4903041_SNP [dm3] 3R_9077319_SNP [dm6]	A	G	3.622e^-5	0.986	INTRON pum
2R	15289194	2R_15289194_SNP [dm3] 2R_19401689_SNP [dm6]	G	A	3.627e^-5	0.986	DOWNSTREAM hts & 1 other INTRON hts
X	2600288	X_2600288_SNP [dm3] X_2706255_SNP [dm6]	T	G	3.632e^-5	0.986	UTR_3_PRIME CG2680 DOWNSTREAM eIF2B-beta	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15431685	2L_15431685_SNP [dm3] 2L_15431685_SNP [dm6]	T	C	3.709e^-5	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	10843705	2R_10843705_SNP [dm3] 2R_14956200_SNP [dm6]	G	A	3.750e^-5	0.986	INTRON aPKC
2L	3379826	2L_3379826_SNP [dm3] 2L_3379826_SNP [dm6]	T	A	3.765e^-5	0.986	INTERGENIC
3R	8806232	3R_8806232_SNP [dm3] 3R_12980510_SNP [dm6]	A	G	3.784e^-5	0.986	UTR_3_PRIME CG7091 UPSTREAM Paip2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
2L	2474412	2L_2474412_SNP [dm3] 2L_2474412_SNP [dm6]	G	T	3.958e^-5	0.986	INTERGENIC	regulatory region REDfly_CRMs
X	2600173	X_2600173_SNP [dm3] X_2706140_SNP [dm6]	T	C	3.978e^-5	0.986	UTR_3_PRIME eIF2B-beta DOWNSTREAM CG2680	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6742044	2R_6742044_SNP [dm3] 2R_10854539_SNP [dm6]	A	G	4.018e^-5	0.986	UPSTREAM CG30015 DOWNSTREAM CR45136 INTRON CG30015
2L	8329360	2L_8329360_SNP [dm3] 2L_8329360_SNP [dm6]	T	A	4.026e^-5	0.986	INTRON CG14275
3L	7900195	3L_7900195_SNP [dm3] 3L_7907095_SNP [dm6]	C	A	4.039e^-5	0.986	INTRON pbl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6507631	2L_6507631_SNP [dm3] 2L_6507631_SNP [dm6]	A	G	4.094e^-5	0.986	INTRON CG31637 EXON CR44775
3L	3538239	3L_3538239_SNP [dm3] 3L_3538239_SNP [dm6]	G	T	4.160e^-5	0.986	INTRON Eip63E
3L	2545338	3L_2545338_SNP [dm3] 3L_2545338_SNP [dm6]	G	C	4.331e^-5	0.986	INTRON Spn
3R	13624833	3R_13624833_SNP [dm3] 3R_17799111_SNP [dm6]	T	A	4.430e^-5	0.986	NON_SYNONYMOUS_CODING CG17803 UPSTREAM CG7379
2L	3869997	2L_3869997_SNP [dm3] 2L_3869997_SNP [dm6]	G	T	4.651e^-5	0.986	SYNONYMOUS_CODING Cep97 UPSTREAM Cep97
X	8238419	X_8238419_SNP [dm3] X_8344386_SNP [dm6]	C	A	4.886e^-5	0.986	INTRON nAChRalpha3
2L	6508912	2L_6508912_SNP [dm3] 2L_6508912_SNP [dm6]	T	A	4.897e^-5	0.986	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb
2L	3434945	2L_3434945_SNP [dm3] 2L_3434945_SNP [dm6]	C	G	4.919e^-5	0.986	INTERGENIC
X	5989809	X_5989809_SNP [dm3] X_6095776_SNP [dm6]	G	T	4.974e^-5	0.986	INTRON Nep1
X	2548698	X_2548698_DEL [dm3] X_2654665_DEL [dm6]	TTT	T	5.040e^-5	0.986	INTRON sgg
2L	10547124	2L_10547124_SNP [dm3] 2L_10547124_SNP [dm6]	C	T	5.395e^-5	0.986	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	4688128	X_4688128_SNP [dm3] X_4794095_SNP [dm6]	T	A	5.463e^-5	0.986	INTERGENIC
2R	5774276	2R_5774276_SNP [dm3] 2R_9886771_SNP [dm6]	T	G	5.503e^-5	0.986	UPSTREAM CG1513 & 1 other INTRON CG1513
X	8238660	X_8238660_SNP [dm3] X_8344627_SNP [dm6]	C	T	5.538e^-5	0.986	INTRON nAChRalpha3
3R	18232847	3R_18232847_SNP [dm3] 3R_22407125_SNP [dm6]	C	T	5.692e^-5	0.986	SPLICE_SITE_REGION CG13855 INTRON CG13855
2R	17032671	2R_17032671_SNP [dm3] 2R_21145166_SNP [dm6]	G	A	5.719e^-5	0.986	SYNONYMOUS_CODING Xbp1 UTR_3_PRIME Xbp1
3L	2980857	3L_2980857_INS [dm3] 3L_2980857_INS [dm6]	A	AA	5.829e^-5	0.986	UPSTREAM CG2107 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	9436216	X_9436216_SNP [dm3] X_9542183_SNP [dm6]	C	A	5.846e^-5	0.986	INTRON CG32700
3R	14333221	3R_14333221_SNP [dm3] 3R_18507499_SNP [dm6]	A	T	5.978e^-5	0.986	UPSTREAM fru INTRON fru
3L	867744	3L_867744_SNP [dm3] 3L_867744_SNP [dm6]	T	G	6.304e^-5	0.986	INTRON CG12502	TF binding site mE1_TFBS_chinmo
3R	16214850	3R_16214850_SNP [dm3] 3R_20389128_SNP [dm6]	T	A	6.364e^-5	0.986	INTRON Gfrl
3R	16213105	3R_16213105_SNP [dm3] 3R_20387383_SNP [dm6]	A	T	6.383e^-5	0.986	INTRON Gfrl
3R	5143693	3R_5143693_SNP [dm3] 3R_9317971_SNP [dm6]	C	T	6.395e^-5	0.986	INTRON CG8861
X	14581518	X_14581518_SNP [dm3] X_14687485_SNP [dm6]	A	G	6.447e^-5	0.986	UTR_3_PRIME NetB DOWNSTREAM NetB
X	8238468	X_8238468_SNP [dm3] X_8344435_SNP [dm6]	T	C	6.546e^-5	0.986	INTRON nAChRalpha3
3L	19084111	3L_19084111_SNP [dm3] 3L_19091011_SNP [dm6]	T	A	6.578e^-5	0.986	DOWNSTREAM CR45386 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6507401	2L_6507401_SNP [dm3] 2L_6507401_SNP [dm6]	A	G	6.639e^-5	0.986	DOWNSTREAM CR44775 INTRON CG31637
2L	6715619	2L_6715619_SNP [dm3] 2L_6715619_SNP [dm6]	G	A	6.650e^-5	0.986	INTRON AkhR	TF binding site BDTNP1_TFBS_dl
3L	7498636	3L_7498636_SNP [dm3] 3L_7505536_SNP [dm6]	T	C	6.668e^-5	0.986	DOWNSTREAM CG7548 INTERGENIC	TF binding site mE1_TFBS_cad
X	2244601	X_2244601_SNP [dm3] X_2350568_SNP [dm6]	C	A	6.689e^-5	0.986	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
3L	8603852	3L_8603852_SNP [dm3] 3L_8610752_SNP [dm6]	C	A	6.812e^-5	0.986	INTRON CG6282
2L	6715595	2L_6715595_SNP [dm3] 2L_6715595_SNP [dm6]	C	A	6.898e^-5	0.986	INTRON AkhR
2R	11214998	2R_11214998_SNP [dm3] 2R_15327493_SNP [dm6]	C	T	6.966e^-5	0.986	UTR_3_PRIME CG8160
2L	10838434	2L_10838434_SNP [dm3] 2L_10838434_SNP [dm6]	A	C	7.009e^-5	0.986	UTR_3_PRIME CG6700 UPSTREAM Nos
2R	1044162	2R_1044162_DEL [dm3] 2R_5156657_DEL [dm6]	CTTGGC	C	7.095e^-5	0.986	INTERGENIC
3R	8810245	3R_8810245_SNP [dm3] 3R_12984523_SNP [dm6]	G	A	7.133e^-5	0.986	UTR_3_PRIME Paip2
2R	9686142	2R_9686142_SNP [dm3] 2R_13798637_SNP [dm6]	G	A	7.140e^-5	0.986	INTRON Cpr50Cb
3R	14579804	3R_14579804_SNP [dm3] 3R_18754082_SNP [dm6]	G	C	7.176e^-5	0.986	SYNONYMOUS_CODING CG14299
3L	3294300	3L_3294300_SNP [dm3] 3L_3294300_SNP [dm6]	C	A	7.178e^-5	0.986	UPSTREAM CG12009 INTRON CG12009
3R	13573600	3R_13573600_SNP [dm3] 3R_17747878_SNP [dm6]	A	C	7.196e^-5	0.986	DOWNSTREAM TyrRII INTERGENIC
3R	24026534	3R_24026534_SNP [dm3] 3R_28200812_SNP [dm6]	C	T	7.265e^-5	0.986	INTRON CG34354
3R	18767461	3R_18767461_SNP [dm3] 3R_22941739_SNP [dm6]	T	C	7.294e^-5	0.986	INTRON klg
2L	6273253	2L_6273253_SNP [dm3] 2L_6273253_SNP [dm6]	A	T	7.405e^-5	0.986	INTRON Ddr
X	4687843	X_4687843_SNP [dm3] X_4793810_SNP [dm6]	C	A	7.540e^-5	0.986	INTERGENIC
2L	6503556	2L_6503556_SNP [dm3] 2L_6503556_SNP [dm6]	G	A	7.541e^-5	0.986	INTRON CG31637	TF binding site mE1_TFBS_Trl
3R	14702892	3R_14702892_SNP [dm3] 3R_18877170_SNP [dm6]	T	G	7.546e^-5	0.986	UTR_3_PRIME CG14298
X	2485767	X_2485767_SNP [dm3] X_2591734_SNP [dm6]	C	A	7.547e^-5	0.986	UPSTREAM egh INTRON egh
2L	1670972	2L_1670972_SNP [dm3] 2L_1670972_SNP [dm6]	C	G	7.676e^-5	0.986	INTRON chinmo
2L	7695746	2L_7695746_SNP [dm3] 2L_7695746_SNP [dm6]	G	A	7.708e^-5	0.986	NON_SYNONYMOUS_CODING Tep2	TF binding site mE1_TFBS_sens
2L	6715603	2L_6715603_SNP [dm3] 2L_6715603_SNP [dm6]	T	A	7.725e^-5	0.986	INTRON AkhR
X	2485879	X_2485879_SNP [dm3] X_2591846_SNP [dm6]	G	A	7.771e^-5	0.986	UPSTREAM egh INTRON egh
X	6491623	X_6491623_SNP [dm3] X_6597590_SNP [dm6]	A	C	7.786e^-5	0.986	SYNONYMOUS_CODING APC7 DOWNSTREAM Pat1	TF binding site BDTNP1_TFBS_twi
2R	11214994	2R_11214994_INS [dm3] 2R_15327489_INS [dm6]	T	TCATT	7.863e^-5	0.986	UTR_3_PRIME CG8160
X	16153996	X_16153996_SNP [dm3] X_16259963_SNP [dm6]	T	C	7.964e^-5	0.986	INTERGENIC
2L	6502317	2L_6502317_SNP [dm3] 2L_6502317_SNP [dm6]	C	T	7.978e^-5	0.986	INTRON CG31637
3L	3294297	3L_3294297_SNP [dm3] 3L_3294297_SNP [dm6]	A	T	8.040e^-5	0.986	UPSTREAM CG12009 INTRON CG12009
3R	13624819	3R_13624819_INS [dm3] 3R_17799097_INS [dm6]	T	TTGTAGATAT	8.076e^-5	0.986	CODON_INSERTION CG17803 UPSTREAM CG7379
X	5485967	X_5485967_SNP [dm3] X_5591934_SNP [dm6]	A	T	8.101e^-5	0.986	INTERGENIC
2L	7808231	2L_7808231_SNP [dm3] 2L_7808231_SNP [dm6]	A	G	8.199e^-5	0.986	INTRON cdc14	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16215558	3R_16215558_SNP [dm3] 3R_20389836_SNP [dm6]	C	T	8.233e^-5	0.986	INTRON Gfrl	TF binding site BDTNP1_TFBS_sna
3R	8811061	3R_8811061_SNP [dm3] 3R_12985339_SNP [dm6]	G	A	8.266e^-5	0.986	UTR_3_PRIME Paip2 UPSTREAM CG31342 DOWNSTREAM Paip2
2L	4273033	2L_4273033_SNP [dm3] 2L_4273033_SNP [dm6]	A	G	8.279e^-5	0.986	INTERGENIC
3L	7498601	3L_7498601_SNP [dm3] 3L_7505501_SNP [dm6]	G	A	8.396e^-5	0.986	DOWNSTREAM CG7548 INTERGENIC	TF binding site mE1_TFBS_cad
2R	20214086	2R_20214086_SNP [dm3] 2R_24326563_SNP [dm6]	A	G	8.565e^-5	0.986	INTRON CR44810
3L	15163459	3L_15163459_SNP [dm3] 3L_15170359_SNP [dm6]	C	G	8.647e^-5	0.986	INTERGENIC
X	5900411	X_5900411_SNP [dm3] X_6006378_SNP [dm6]	A	C	8.774e^-5	0.986	DOWNSTREAM CR44498 INTERGENIC
X	20656923	X_20656923_SNP [dm3] X_20785896_SNP [dm6]	G	C	8.811e^-5	0.986	INTRON shakB
X	20659554	X_20659554_SNP [dm3] X_20788527_SNP [dm6]	T	G	8.811e^-5	0.986	UPSTREAM shakB INTRON shakB
X	9988154	X_9988154_SNP [dm3] X_10094121_SNP [dm6]	C	A	8.818e^-5	0.986	INTRON RhoU
X	11419702	X_11419702_SNP [dm3] X_11525669_SNP [dm6]	C	T	8.842e^-5	0.986	INTRON Drak
3L	4230466	3L_4230466_SNP [dm3] 3L_4230466_SNP [dm6]	G	T	8.907e^-5	0.986	INTRON ImpL2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
X	2544014	X_2544014_SNP [dm3] X_2649981_SNP [dm6]	G	C	8.959e^-5	0.986	INTRON sgg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7382464	3R_7382464_SNP [dm3] 3R_11556742_SNP [dm6]	C	T	8.997e^-5	0.986	INTERGENIC
2L	6503339	2L_6503339_SNP [dm3] 2L_6503339_SNP [dm6]	A	T	9.197e^-5	0.986	INTRON CG31637	TF binding site mE1_TFBS_Trl
3R	18232809	3R_18232809_DEL [dm3] 3R_22407087_DEL [dm6]	AATTATGAAACT...	A	9.310e^-5	0.986	INTRON CG13855
2L	2848141	2L_2848141_SNP [dm3] 2L_2848141_SNP [dm6]	A	C	9.426e^-5	0.986	NON_SYNONYMOUS_CODING CG2983 UPSTREAM CG3117 DOWNSTREAM CG3104
2L	10837396	2L_10837396_SNP [dm3] 2L_10837396_SNP [dm6]	G	C	9.429e^-5	0.986	UTR_5_PRIME Nos DOWNSTREAM CG6700
3L	851583	3L_851583_SNP [dm3] 3L_851583_SNP [dm6]	G	A	9.451e^-5	0.986	NON_SYNONYMOUS_CODING CG13890 DOWNSTREAM CG13889	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16214005	3R_16214005_SNP [dm3] 3R_20388283_SNP [dm6]	G	A	9.471e^-5	0.986	INTRON Gfrl
2L	3259928	2L_3259928_SNP [dm3] 2L_3259928_SNP [dm6]	C	T	9.556e^-5	0.986	INTERGENIC
2L	10113909	2L_10113909_SNP [dm3] 2L_10113909_SNP [dm6]	G	T	9.581e^-5	0.986	INTRON CG44153 & 1 other
X	4687849	X_4687849_DEL [dm3] X_4793816_DEL [dm6]	TCTACTACATT...	T	9.601e^-5	0.986	INTERGENIC
3L	9303656	3L_9303656_SNP [dm3] 3L_9310556_SNP [dm6]	A	T	9.614e^-5	0.986	INTERGENIC
3R	21010610	3R_21010610_SNP [dm3] 3R_25184888_SNP [dm6]	A	G	9.641e^-5	0.986	UTR_5_PRIME dan UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	9685628	X_9685628_SNP [dm3] X_9791595_SNP [dm6]	C	T	9.648e^-5	0.986	INTRON CG32698
3R	17894239	3R_17894239_SNP [dm3] 3R_22068517_SNP [dm6]	G	A	9.767e^-5	0.986	INTRON how
3L	15233541	3L_15233541_SNP [dm3] 3L_15240441_SNP [dm6]	G	A	9.925e^-5	0.986	UTR_3_PRIME Tollo
2L	13852373	2L_13852373_SNP [dm3] 2L_13852373_SNP [dm6]	C	A	9.929e^-5	0.986	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	16078407	2R_16078407_INS [dm3] 2R_20190902_INS [dm6]	C	CA	9.963e^-5	0.986	INTERGENIC
3L	15115768	3L_15115768_SNP [dm3] 3L_15122668_SNP [dm6]	G	A	1.004e^-4	0.986	SYNONYMOUS_CODING CG16959 DOWNSTREAM CG32847 INTRON Cep135
2L	6514935	2L_6514935_SNP [dm3] 2L_6514935_SNP [dm6]	C	T	1.005e^-4	0.986	INTRON CG31637
3L	8319775	3L_8319775_SNP [dm3] 3L_8326675_SNP [dm6]	G	A	1.008e^-4	0.986	INTRON CG34461	TF binding site mE1_TFBS_cad
3R	7382474	3R_7382474_SNP [dm3] 3R_11556752_SNP [dm6]	T	A	1.012e^-4	0.986	INTERGENIC
3L	13527214	3L_13527214_SNP [dm3] 3L_13534114_SNP [dm6]	T	C	1.022e^-4	0.986	UTR_3_PRIME bru-3	TF binding site mE1_TFBS_HSA
3R	15172840	3R_15172840_SNP [dm3] 3R_19347118_SNP [dm6]	T	A	1.024e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11878819	3L_11878819_SNP [dm3] 3L_11885719_SNP [dm6]	C	T	1.025e^-4	0.986	INTRON CG44837
3R	26605440	3R_26605440_SNP [dm3] 3R_30779718_SNP [dm6]	G	T	1.029e^-4	0.986	INTRON zfh1	TF binding site BDTNP1_TFBS_dl
3R	8810911	3R_8810911_SNP [dm3] 3R_12985189_SNP [dm6]	T	G	1.035e^-4	0.986	UTR_3_PRIME Paip2 UPSTREAM CG31342 DOWNSTREAM Paip2
2L	6502872	2L_6502872_SNP [dm3] 2L_6502872_SNP [dm6]	C	A	1.042e^-4	0.986	INTRON CG31637	TF binding site mE1_TFBS_Trl
2L	3739707	2L_3739707_SNP [dm3] 2L_3739707_SNP [dm6]	T	G	1.045e^-4	0.986	INTRON CG10019
2L	4815719	2L_4815719_SNP [dm3] 2L_4815719_SNP [dm6]	T	C	1.053e^-4	0.986	SYNONYMOUS_CODING CG15629 UTR_3_PRIME CG3225
2L	2474617	2L_2474617_SNP [dm3] 2L_2474617_SNP [dm6]	T	C	1.061e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs
X	19627537	X_19627537_SNP [dm3] X_19733504_SNP [dm6]	T	C	1.061e^-4	0.986	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6502711	2L_6502711_SNP [dm3] 2L_6502711_SNP [dm6]	G	T	1.069e^-4	0.986	INTRON CG31637	TF binding site mE1_TFBS_Trl
2L	9213161	2L_9213161_SNP [dm3] 2L_9213161_SNP [dm6]	C	T	1.074e^-4	0.986	INTRON tai
3L	11213350	3L_11213350_SNP [dm3] 3L_11220250_SNP [dm6]	A	G	1.075e^-4	0.986	INTRON CG42671	TF binding site mE1_TFBS_cad
3L	5846998	3L_5846998_SNP [dm3] 3L_5853898_SNP [dm6]	G	A	1.078e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17944884	2R_17944884_SNP [dm3] 2R_22057379_SNP [dm6]	A	C	1.078e^-4	0.986	SYNONYMOUS_CODING CG13500	TF binding site mE1_TFBS_cad
2L	2474449	2L_2474449_SNP [dm3] 2L_2474449_SNP [dm6]	T	G	1.084e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs
X	19233626	X_19233626_SNP [dm3] X_19339593_SNP [dm6]	A	G	1.088e^-4	0.986	INTRON nAChRalpha7
X	14581683	X_14581683_INS [dm3] X_14687650_INS [dm6]	C	CC	1.094e^-4	0.986	UTR_3_PRIME NetB
3L	7498555	3L_7498555_SNP [dm3] 3L_7505455_SNP [dm6]	C	A	1.106e^-4	0.986	DOWNSTREAM CG7548 INTERGENIC
3R	3837242	3R_3837242_SNP [dm3] 3R_8011520_SNP [dm6]	G	A	1.109e^-4	0.986	SYNONYMOUS_CODING CG10435 DOWNSTREAM CG3223
2R	9123353	2R_9123353_SNP [dm3] 2R_13235848_SNP [dm6]	C	T	1.112e^-4	0.986	UPSTREAM CG4676 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16214021	3R_16214021_SNP [dm3] 3R_20388299_SNP [dm6]	C	G	1.116e^-4	0.986	INTRON Gfrl
3R	16214006	3R_16214006_SNP [dm3] 3R_20388284_SNP [dm6]	C	G	1.124e^-4	0.986	INTRON Gfrl
2L	3831043	2L_3831043_SNP [dm3] 2L_3831043_SNP [dm6]	C	A	1.125e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8806945	3R_8806945_SNP [dm3] 3R_12981223_SNP [dm6]	T	C	1.131e^-4	0.986	UTR_5_PRIME Paip2 DOWNSTREAM CG7091	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	7498539	3L_7498539_SNP [dm3] 3L_7505439_SNP [dm6]	T	A	1.132e^-4	0.986	DOWNSTREAM CG7548 INTERGENIC
X	4148744	X_4148744_SNP [dm3] X_4254711_SNP [dm6]	G	A	1.141e^-4	0.986	INTERGENIC
3R	18232807	3R_18232807_SNP [dm3] 3R_22407085_SNP [dm6]	T	C	1.142e^-4	0.986	INTRON CG13855
3R	13561935	3R_13561935_SNP [dm3] 3R_17736213_SNP [dm6]	G	C	1.143e^-4	0.986	UPSTREAM TyrRII INTERGENIC
X	18415305	X_18415305_SNP [dm3] X_18521272_SNP [dm6]	C	T	1.147e^-4	0.986	UTR_3_PRIME CG6481 DOWNSTREAM Aats-his INTRON Bx
3R	7379741	3R_7379741_SNP [dm3] 3R_11554019_SNP [dm6]	A	T	1.150e^-4	0.986	UPSTREAM CG14708 INTERGENIC
X	2544922	X_2544922_SNP [dm3] X_2650889_SNP [dm6]	C	T	1.150e^-4	0.986	INTRON sgg
3R	16869648	3R_16869648_SNP [dm3] 3R_21043926_SNP [dm6]	A	G	1.154e^-4	0.986	UPSTREAM CG12278 DOWNSTREAM CG31189 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	9123387	2R_9123387_SNP [dm3] 2R_13235882_SNP [dm6]	G	T	1.156e^-4	0.986	UPSTREAM CG4676 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16213148	3R_16213148_SNP [dm3] 3R_20387426_SNP [dm6]	G	T	1.161e^-4	0.986	SYNONYMOUS_CODING Gfrl
3R	7383357	3R_7383357_SNP [dm3] 3R_11557635_SNP [dm6]	C	T	1.162e^-4	0.986	UPSTREAM CG10898 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10350969	3L_10350969_SNP [dm3] 3L_10357869_SNP [dm6]	T	C	1.165e^-4	0.986	INTRON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9123363	2R_9123363_SNP [dm3] 2R_13235858_SNP [dm6]	A	G	1.166e^-4	0.986	UPSTREAM CG4676 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19081852	3L_19081852_SNP [dm3] 3L_19088752_SNP [dm6]	C	G	1.170e^-4	0.986	INTERGENIC
X	3444930	X_3444930_SNP [dm3] X_3550897_SNP [dm6]	C	T	1.171e^-4	0.986	INTRON CG32791
2L	16628423	2L_16628423_SNP [dm3] 2L_16628423_SNP [dm6]	T	C	1.180e^-4	0.986	DOWNSTREAM CR44151 INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	2961133	3L_2961133_SNP [dm3] 3L_2961133_SNP [dm6]	A	T	1.181e^-4	0.986	UPSTREAM Or63a & 1 other INTERGENIC
3L	7484678	3L_7484678_SNP [dm3] 3L_7491578_SNP [dm6]	A	T	1.183e^-4	0.986	UPSTREAM Cyp316a1 INTERGENIC
2L	8283299	2L_8283299_SNP [dm3] 2L_8283299_SNP [dm6]	A	C	1.184e^-4	0.986	INTRON Btk29A
3L	2980862	3L_2980862_SNP [dm3] 3L_2980862_SNP [dm6]	C	A	1.195e^-4	0.986	UPSTREAM CG2107 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	16534066	3R_16534066_SNP [dm3] 3R_20708344_SNP [dm6]	G	A	1.201e^-4	0.986	INTRON Oamb
2R	18695624	2R_18695624_SNP [dm3] 2R_22808119_SNP [dm6]	G	C	1.210e^-4	0.986	UTR_5_PRIME stl UPSTREAM stl	TF binding site mE1_TFBS_cad
3R	17894247	3R_17894247_DEL [dm3] 3R_22068525_DEL [dm6]	CT	C	1.214e^-4	0.986	INTRON how
3L	6550668	3L_6550668_SNP [dm3] 3L_6557568_SNP [dm6]	A	G	1.217e^-4	0.986	INTRON CG18769
3R	7396002	3R_7396002_SNP [dm3] 3R_11570280_SNP [dm6]	C	T	1.218e^-4	0.986	INTRON Mrp4
3R	24058004	3R_24058004_SNP [dm3] 3R_28232282_SNP [dm6]	T	A	1.235e^-4	0.986	INTRON CG34354
3R	27164956	3R_27164956_SNP [dm3] 3R_31339234_SNP [dm6]	T	C	1.235e^-4	0.986	INTRON CG34347	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20249679	2R_20249679_SNP [dm3] 2R_24362156_SNP [dm6]	T	C	1.237e^-4	0.986	INTRON bs & 1 other
3R	8804427	3R_8804427_SNP [dm3] 3R_12978705_SNP [dm6]	T	A	1.250e^-4	0.986	INTRON CG7091
3R	16534353	3R_16534353_SNP [dm3] 3R_20708631_SNP [dm6]	G	A	1.257e^-4	0.986	INTRON Oamb
3R	7387986	3R_7387986_SNP [dm3] 3R_11562264_SNP [dm6]	T	A	1.266e^-4	0.986	UTR_5_PRIME sea INTRON sea & 1 other	TF binding site mE1_TFBS_Trl
2R	9123411	2R_9123411_SNP [dm3] 2R_13235906_SNP [dm6]	G	T	1.267e^-4	0.986	UPSTREAM CG4676 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9738831	3R_9738831_SNP [dm3] 3R_13913109_SNP [dm6]	C	T	1.271e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_inv
X	2548805	X_2548805_SNP [dm3] X_2654772_SNP [dm6]	T	G	1.274e^-4	0.986	INTRON sgg
3L	867754	3L_867754_SNP [dm3] 3L_867754_SNP [dm6]	C	T	1.277e^-4	0.986	INTRON CG12502	TF binding site mE1_TFBS_chinmo
3R	26377831	3R_26377831_SNP [dm3] 3R_30552109_SNP [dm6]	A	T	1.291e^-4	0.986	INTRON tmod
X	14320915	X_14320915_SNP [dm3] X_14426882_SNP [dm6]	T	C	1.297e^-4	0.986	INTRON dpr8
3R	6677204	3R_6677204_SNP [dm3] 3R_10851482_SNP [dm6]	G	A	1.297e^-4	0.986	SYNONYMOUS_STOP CG42394	TF binding site BDTNP1_TFBS_dl
3L	2116195	3L_2116195_SNP [dm3] 3L_2116195_SNP [dm6]	C	G	1.309e^-4	0.986	UPSTREAM sls INTERGENIC	TF binding site mE1_TFBS_Trl
3L	19081986	3L_19081986_SNP [dm3] 3L_19088886_SNP [dm6]	T	A	1.322e^-4	0.986	INTERGENIC
3R	6671050	3R_6671050_SNP [dm3] 3R_10845328_SNP [dm6]	A	C	1.322e^-4	0.986	INTRON Cad86C
X	19574387	X_19574387_INS [dm3] X_19680354_INS [dm6]	A	AA	1.326e^-4	0.986	INTRON dome	regulatory region REDfly_CRMs
3R	4298728	3R_4298728_SNP [dm3] 3R_8473006_SNP [dm6]	A	T	1.334e^-4	0.986	INTRON CG45263	TF binding site BDTNP1_TFBS_prd
2L	4815752	2L_4815752_SNP [dm3] 2L_4815752_SNP [dm6]	T	C	1.337e^-4	0.986	SYNONYMOUS_CODING CG15629 UTR_3_PRIME CG3225
3R	10876134	3R_10876134_SNP [dm3] 3R_15050412_SNP [dm6]	C	G	1.338e^-4	0.986	INTERGENIC
3L	11743649	3L_11743649_SNP [dm3] 3L_11750549_SNP [dm6]	A	G	1.339e^-4	0.986	UPSTREAM Gr68a INTRON CG6024
X	3443437	X_3443437_DEL [dm3] X_3549404_DEL [dm6]	TAGCCT	T	1.340e^-4	0.986	INTRON CG32791
3R	7379740	3R_7379740_SNP [dm3] 3R_11554018_SNP [dm6]	T	A	1.364e^-4	0.986	UPSTREAM CG14708 INTERGENIC
3L	9831305	3L_9831305_SNP [dm3] 3L_9838205_SNP [dm6]	A	C	1.371e^-4	0.986	SYNONYMOUS_CODING Cdk8 DOWNSTREAM RasGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15294185	2L_15294185_SNP [dm3] 2L_15294185_SNP [dm6]	T	C	1.372e^-4	0.986	DOWNSTREAM ms_2_35Ci INTERGENIC
3L	2924885	3L_2924885_SNP [dm3] 3L_2924885_SNP [dm6]	T	A	1.376e^-4	0.986	SYNONYMOUS_CODING Shab	TF binding site mE1_TFBS_chinmo
X	2703869	X_2703869_SNP [dm3] X_2809836_SNP [dm6]	G	T	1.383e^-4	0.986	UPSTREAM CG12498 INTRON kirre	TF binding site mE1_TFBS_HSA
2L	8283458	2L_8283458_SNP [dm3] 2L_8283458_SNP [dm6]	T	G	1.387e^-4	0.986	SYNONYMOUS_CODING Btk29A UTR_5_PRIME Btk29A
3R	8804446	3R_8804446_SNP [dm3] 3R_12978724_SNP [dm6]	G	T	1.392e^-4	0.986	INTRON CG7091
2L	2474337	2L_2474337_SNP [dm3] 2L_2474337_SNP [dm6]	G	C	1.393e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs
2L	6461980	2L_6461980_SNP [dm3] 2L_6461980_SNP [dm6]	C	T	1.402e^-4	0.986	INTRON CG16947
X	3443646	X_3443646_SNP [dm3] X_3549613_SNP [dm6]	A	T	1.403e^-4	0.986	INTRON CG32791
3L	4387040	3L_4387040_SNP [dm3] 3L_4387040_SNP [dm6]	C	G	1.407e^-4	0.986	INTRON slow
3R	13922827	3R_13922827_SNP [dm3] 3R_18097105_SNP [dm6]	T	A	1.418e^-4	0.986	INTRON sr
X	4148739	X_4148739_SNP [dm3] X_4254706_SNP [dm6]	A	T	1.442e^-4	0.986	INTERGENIC
X	20241013	X_20241013_SNP [dm3] X_20369986_SNP [dm6]	G	C	1.453e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10500032	2L_10500032_SNP [dm3] 2L_10500032_SNP [dm6]	T	A	1.461e^-4	0.986	INTRON Myo31DF
3L	2980892	3L_2980892_SNP [dm3] 3L_2980892_SNP [dm6]	T	G	1.483e^-4	0.986	UPSTREAM CG2107 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14817982	3R_14817982_SNP [dm3] 3R_18992260_SNP [dm6]	C	A	1.492e^-4	0.986	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	6513138	2L_6513138_SNP [dm3] 2L_6513138_SNP [dm6]	C	A	1.499e^-4	0.986	INTRON CG31637	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	6513686	2L_6513686_SNP [dm3] 2L_6513686_SNP [dm6]	C	T	1.499e^-4	0.986	INTRON CG31637	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	18552038	2R_18552038_INS [dm3] 2R_22664533_INS [dm6]	A	ACGT	1.503e^-4	0.986	DOWNSTREAM CG4250 INTERGENIC
X	4425681	X_4425681_SNP [dm3] X_4531648_SNP [dm6]	A	C	1.504e^-4	0.986	SYNONYMOUS_CODING CG3556 INTRON CR32773
2R	5350951	2R_5350951_SNP [dm3] 2R_9463446_SNP [dm6]	T	A	1.515e^-4	0.986	UPSTREAM Camta INTRON Camta
3L	3775546	3L_3775546_SNP [dm3] 3L_3775546_SNP [dm6]	A	G	1.531e^-4	0.986	INTRON CG32264
2R	12967865	2R_12967865_SNP [dm3] 2R_17080360_SNP [dm6]	G	A	1.531e^-4	0.986	INTRON CG30460
3R	7383287	3R_7383287_SNP [dm3] 3R_11557565_SNP [dm6]	A	G	1.534e^-4	0.986	UPSTREAM CG10898 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	1990818	X_1990818_SNP [dm3] X_2096785_SNP [dm6]	A	C	1.537e^-4	0.986	INTRON csw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	25156880	3R_25156880_DEL [dm3] 3R_29331158_DEL [dm6]	AGGAGGT	A	1.537e^-4	0.986	INTERGENIC
2R	9123393	2R_9123393_SNP [dm3] 2R_13235888_SNP [dm6]	C	T	1.540e^-4	0.986	UPSTREAM CG4676 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21537350	3R_21537350_SNP [dm3] 3R_25711628_SNP [dm6]	T	C	1.542e^-4	0.986	INTRON LpR2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	868276	3L_868276_SNP [dm3] 3L_868276_SNP [dm6]	G	A	1.545e^-4	0.986	SYNONYMOUS_CODING CG12502	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3172414	2L_3172414_SNP [dm3] 2L_3172414_SNP [dm6]	A	G	1.554e^-4	0.986	DOWNSTREAM tRNA:S7:23Ea & 1 other EXON CR44003	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
X	5531339	X_5531339_SNP [dm3] X_5637306_SNP [dm6]	C	T	1.564e^-4	0.986	INTRON CG42492	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	9685772	X_9685772_SNP [dm3] X_9791739_SNP [dm6]	C	A	1.577e^-4	0.986	INTRON CG32698
2L	2395536	2L_2395536_SNP [dm3] 2L_2395536_SNP [dm6]	G	T	1.580e^-4	0.986	INTRON VGlut
X	8238418	X_8238418_SNP [dm3] X_8344385_SNP [dm6]	A	C	1.581e^-4	0.986	INTRON nAChRalpha3
3R	4659273	3R_4659273_SNP [dm3] 3R_8833551_SNP [dm6]	C	A	1.594e^-4	0.986	NON_SYNONYMOUS_CODING pyd UTR_3_PRIME pyd INTRON pyd	TF binding site mE1_TFBS_cad
2L	948766	2L_948766_SNP [dm3] 2L_948766_SNP [dm6]	T	A	1.609e^-4	0.986	INTRON CG4341
2L	6302850	2L_6302850_SNP [dm3] 2L_6302850_SNP [dm6]	A	G	1.615e^-4	0.986	INTRON Ddr
2L	883471	2L_883471_SNP [dm3] 2L_883471_SNP [dm6]	A	T	1.615e^-4	0.986	SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6502287	2L_6502287_SNP [dm3] 2L_6502287_SNP [dm6]	C	T	1.616e^-4	0.986	INTRON CG31637
3L	460156	3L_460156_SNP [dm3] 3L_460156_SNP [dm6]	T	A	1.619e^-4	0.986	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8806018	3R_8806018_SNP [dm3] 3R_12980296_SNP [dm6]	T	C	1.619e^-4	0.986	NON_SYNONYMOUS_CODING CG7091 UPSTREAM Paip2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3R	8806373	3R_8806373_SNP [dm3] 3R_12980651_SNP [dm6]	C	T	1.623e^-4	0.986	UPSTREAM Paip2 DOWNSTREAM CG7091 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	20489196	2L_20489196_SNP [dm3] 2L_20489196_SNP [dm6]	A	G	1.627e^-4	0.986	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	4769596	X_4769596_INS [dm3] X_4875563_INS [dm6]	G	GGGG	1.633e^-4	0.986	UPSTREAM CG12681 INTRON CG42594
3R	8802638	3R_8802638_SNP [dm3] 3R_12976916_SNP [dm6]	A	C	1.637e^-4	0.986	INTRON CG7381
3L	6273281	3L_6273281_SNP [dm3] 3L_6280181_SNP [dm6]	A	T	1.640e^-4	0.986	INTERGENIC
3R	13624765	3R_13624765_SNP [dm3] 3R_17799043_SNP [dm6]	G	T	1.643e^-4	0.986	NON_SYNONYMOUS_CODING CG17803 UPSTREAM CG7379
3R	8807401	3R_8807401_INS [dm3] 3R_12981679_INS [dm6]	A	AGTCAA	1.644e^-4	0.986	INTRON Paip2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	1246969	2L_1246969_SNP [dm3] 2L_1246969_SNP [dm6]	A	T	1.653e^-4	0.986	INTERGENIC
3R	7548048	3R_7548048_SNP [dm3] 3R_11722326_SNP [dm6]	A	T	1.654e^-4	0.986	UTR_5_PRIME CG12594
2L	9214581	2L_9214581_SNP [dm3] 2L_9214581_SNP [dm6]	T	A	1.657e^-4	0.986	INTRON tai
X	13876354	X_13876354_SNP [dm3] X_13982321_SNP [dm6]	A	G	1.659e^-4	0.986	INTRON mamo
2L	3238374	2L_3238374_SNP [dm3] 2L_3238374_SNP [dm6]	G	T	1.670e^-4	0.986	INTERGENIC
3L	2866980	3L_2866980_SNP [dm3] 3L_2866980_SNP [dm6]	A	T	1.674e^-4	0.986	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1324961	2L_1324961_SNP [dm3] 2L_1324961_SNP [dm6]	T	C	1.680e^-4	0.986	INTERGENIC
3R	8809805	3R_8809805_SNP [dm3] 3R_12984083_SNP [dm6]	A	G	1.684e^-4	0.986	INTRON Paip2
3L	3294309	3L_3294309_SNP [dm3] 3L_3294309_SNP [dm6]	T	A	1.687e^-4	0.986	UPSTREAM CG12009 INTRON CG12009
3R	25156893	3R_25156893_SNP [dm3] 3R_29331171_SNP [dm6]	G	A	1.712e^-4	0.986	INTERGENIC
X	5531393	X_5531393_SNP [dm3] X_5637360_SNP [dm6]	A	T	1.714e^-4	0.986	INTRON CG42492	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5531466	X_5531466_SNP [dm3] X_5637433_SNP [dm6]	T	A	1.716e^-4	0.986	INTRON CG42492	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26548259	3R_26548259_INS [dm3] 3R_30722537_INS [dm6]	C	CACTAAGAAA	1.718e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6516086	2L_6516086_SNP [dm3] 2L_6516086_SNP [dm6]	A	T	1.718e^-4	0.986	INTRON CG31637
2L	6513388	2L_6513388_SNP [dm3] 2L_6513388_SNP [dm6]	G	T	1.718e^-4	0.986	INTRON CG31637	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22505925	3R_22505925_SNP [dm3] 3R_26680203_SNP [dm6]	C	T	1.723e^-4	0.986	INTRON beat-VII
3R	7383359	3R_7383359_SNP [dm3] 3R_11557637_SNP [dm6]	G	A	1.725e^-4	0.986	UPSTREAM CG10898 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17109308	3R_17109308_SNP [dm3] 3R_21283586_SNP [dm6]	G	A	1.730e^-4	0.986	SPLICE_SITE_REGION CG17298 SYNONYMOUS_CODING CG17298 INTRON SIFaR	TF binding site mE1_TFBS_cad
3R	15172830	3R_15172830_SNP [dm3] 3R_19347108_SNP [dm6]	A	C	1.732e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2599722	X_2599722_SNP [dm3] X_2705689_SNP [dm6]	G	A	1.760e^-4	0.986	SYNONYMOUS_CODING eIF2B-beta DOWNSTREAM CG2680	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1134655	3L_1134655_SNP [dm3] 3L_1134655_SNP [dm6]	T	C	1.761e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs
2L	1148073	2L_1148073_SNP [dm3] 2L_1148073_SNP [dm6]	A	G	1.762e^-4	0.986	NON_SYNONYMOUS_CODING CG4749 DOWNSTREAM MFS3	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	16214090	3R_16214090_SNP [dm3] 3R_20388368_SNP [dm6]	A	T	1.769e^-4	0.986	INTRON Gfrl
3L	14127691	3L_14127691_INS [dm3] 3L_14134591_INS [dm6]	G	GC	1.772e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	21456084	3R_21456084_SNP [dm3] 3R_25630362_SNP [dm6]	G	A	1.784e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	7635292	2R_7635292_SNP [dm3] 2R_11747787_SNP [dm6]	T	C	1.792e^-4	0.986	INTERGENIC
X	5531370	X_5531370_SNP [dm3] X_5637337_SNP [dm6]	C	G	1.795e^-4	0.986	INTRON CG42492	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	12374656	X_12374656_SNP [dm3] X_12480623_SNP [dm6]	T	A	1.798e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8811032	3R_8811032_SNP [dm3] 3R_12985310_SNP [dm6]	A	G	1.801e^-4	0.986	UTR_3_PRIME Paip2 UPSTREAM CG31342 DOWNSTREAM Paip2
2L	14006633	2L_14006633_SNP [dm3] 2L_14006633_SNP [dm6]	G	A	1.808e^-4	0.986	INTERGENIC
3R	7146731	3R_7146731_INS [dm3] 3R_11321009_INS [dm6]	A	AA	1.813e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	9162030	2L_9162030_SNP [dm3] 2L_9162030_SNP [dm6]	C	G	1.814e^-4	0.986	INTRON CG32982
2R	16395584	2R_16395584_SNP [dm3] 2R_20508079_SNP [dm6]	C	T	1.817e^-4	0.986	UPSTREAM CR44646 INTERGENIC
3R	4708088	3R_4708088_SNP [dm3] 3R_8882366_SNP [dm6]	A	T	1.825e^-4	0.986	INTRON pyd
3R	9721590	3R_9721590_SNP [dm3] 3R_13895868_SNP [dm6]	G	A	1.836e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14777845	3R_14777845_SNP [dm3] 3R_18952123_SNP [dm6]	C	T	1.844e^-4	0.986	INTRON CG42613 & 1 other
3L	3533842	3L_3533842_SNP [dm3] 3L_3533842_SNP [dm6]	T	A	1.847e^-4	0.986	INTRON Eip63E
3L	6274190	3L_6274190_SNP [dm3] 3L_6281090_SNP [dm6]	G	T	1.850e^-4	0.986	INTERGENIC
2R	15289251	2R_15289251_SNP [dm3] 2R_19401746_SNP [dm6]	A	T	1.863e^-4	0.986	UTR_3_PRIME hts DOWNSTREAM CR43430 INTRON hts
3L	2989660	3L_2989660_SNP [dm3] 3L_2989660_SNP [dm6]	G	T	1.878e^-4	0.986	INTERGENIC
X	10903478	X_10903478_SNP [dm3] X_11009445_SNP [dm6]	T	A	1.883e^-4	0.986	INTRON CG42339
X	16618917	X_16618917_SNP [dm3] X_16724884_SNP [dm6]	T	G	1.893e^-4	0.986	INTRON CG32572
3R	22093285	3R_22093285_SNP [dm3] 3R_26267563_SNP [dm6]	A	C	1.909e^-4	0.986	UPSTREAM CG6154 INTRON CG6154
X	6491646	X_6491646_SNP [dm3] X_6597613_SNP [dm6]	A	G	1.915e^-4	0.986	SYNONYMOUS_CODING APC7 DOWNSTREAM Pat1	TF binding site BDTNP1_TFBS_twi
2R	11397672	2R_11397672_INS [dm3] 2R_15510167_INS [dm6]	T	TAT	1.917e^-4	0.986	INTERGENIC
3R	15301687	3R_15301687_DEL [dm3] 3R_19475965_DEL [dm6]	TG	T	1.927e^-4	0.986	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2548693	X_2548693_SNP [dm3] X_2654660_SNP [dm6]	T	A	1.930e^-4	0.986	INTRON sgg
3L	11148450	3L_11148450_SNP [dm3] 3L_11155350_SNP [dm6]	T	G	1.930e^-4	0.986	INTRON CG32082
2R	9123489	2R_9123489_SNP [dm3] 2R_13235984_SNP [dm6]	T	A	1.934e^-4	0.986	UTR_5_PRIME CG4676 UPSTREAM CG4670	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9123521	2R_9123521_SNP [dm3] 2R_13236016_SNP [dm6]	T	A	1.934e^-4	0.986	START_LOST CG4676 UPSTREAM CG4670	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1109306	3L_1109306_SNP [dm3] 3L_1109306_SNP [dm6]	G	A	1.936e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10113873	2L_10113873_SNP [dm3] 2L_10113873_SNP [dm6]	A	G	1.937e^-4	0.986	INTRON CG44153 & 1 other
3R	25156889	3R_25156889_SNP [dm3] 3R_29331167_SNP [dm6]	C	A	1.937e^-4	0.986	INTERGENIC
X	12374614	X_12374614_SNP [dm3] X_12480581_SNP [dm6]	A	T	1.941e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20401848	X_20401848_SNP [dm3] X_20530821_SNP [dm6]	C	T	1.946e^-4	0.986	INTERGENIC
3L	6295134	3L_6295134_SNP [dm3] 3L_6302034_SNP [dm6]	C	T	1.947e^-4	0.986	DOWNSTREAM CR45420 INTERGENIC
X	4404031	X_4404031_SNP [dm3] X_4509998_SNP [dm6]	A	C	1.949e^-4	0.986	INTRON CR32773
2R	12462845	2R_12462845_SNP [dm3] 2R_16575340_SNP [dm6]	T	A	1.951e^-4	0.986	SPLICE_SITE_ACCEPTOR CG8317 START_GAINED CG8317 UTR_5_PRIME CG8317 INTRON CG8317	TF binding site mE1_TFBS_inv
3R	21815087	3R_21815087_SNP [dm3] 3R_25989365_SNP [dm6]	A	G	1.960e^-4	0.986	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_sens
X	3325187	X_3325187_SNP [dm3] X_3431154_SNP [dm6]	G	C	1.965e^-4	0.986	INTRON CR44999 & 1 other
3L	1741582	3L_1741582_SNP [dm3] 3L_1741582_SNP [dm6]	G	A	1.973e^-4	0.986	UPSTREAM Gk INTRON Gk	TF binding site mE1_TFBS_cad
X	11419787	X_11419787_SNP [dm3] X_11525754_SNP [dm6]	C	T	1.977e^-4	0.986	INTRON Drak
2R	11309804	2R_11309804_SNP [dm3] 2R_15422299_SNP [dm6]	G	A	1.979e^-4	0.986	DOWNSTREAM CG30472 INTRON CG43729	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7387487	3R_7387487_SNP [dm3] 3R_11561765_SNP [dm6]	C	A	1.980e^-4	0.986	INTRON sea & 1 other
2L	6461945	2L_6461945_SNP [dm3] 2L_6461945_SNP [dm6]	G	A	1.984e^-4	0.986	INTRON CG16947
3R	24212262	3R_24212262_SNP [dm3] 3R_28386540_SNP [dm6]	T	C	1.988e^-4	0.986	INTERGENIC
3L	3881755	3L_3881755_SNP [dm3] 3L_3881755_SNP [dm6]	A	G	1.989e^-4	0.986	INTERGENIC
3L	11252616	3L_11252616_SNP [dm3] 3L_11259516_SNP [dm6]	T	A	1.989e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2403114	X_2403114_SNP [dm3] X_2509081_SNP [dm6]	A	T	1.991e^-4	0.986	INTRON trol
X	12374654	X_12374654_SNP [dm3] X_12480621_SNP [dm6]	T	C	2.004e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4695064	X_4695064_SNP [dm3] X_4801031_SNP [dm6]	G	T	2.004e^-4	0.986	NON_SYNONYMOUS_CODING CG2861
2R	6962749	2R_6962749_INS [dm3] 2R_11075244_INS [dm6]	A	AAC	2.009e^-4	0.986	INTRON luna
2R	20050887	2R_20050887_SNP [dm3] 2R_24163364_SNP [dm6]	A	T	2.016e^-4	0.986	INTRON CG3328
2L	9162022	2L_9162022_INS [dm3] 2L_9162022_INS [dm6]	AA	TCTT	2.019e^-4	0.986	INTRON CG32982
2R	4673755	2R_4673755_SNP [dm3] 2R_8786250_SNP [dm6]	C	G	2.023e^-4	0.986	INTERGENIC
2L	7259916	2L_7259916_SNP [dm3] 2L_7259916_SNP [dm6]	C	T	2.032e^-4	0.986	INTRON Wnt4
X	5191019	X_5191019_INS [dm3] X_5296986_INS [dm6]	G	GC	2.035e^-4	0.986	INTRON CG42749
3L	5708287	3L_5708287_SNP [dm3] 3L_5715187_SNP [dm6]	G	T	2.035e^-4	0.986	INTRON sif	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1891682	3R_1891682_SNP [dm3] 3R_6065960_SNP [dm6]	G	C	2.036e^-4	0.986	INTERGENIC
3R	8806514	3R_8806514_SNP [dm3] 3R_12980792_SNP [dm6]	T	C	2.041e^-4	0.986	UTR_5_PRIME Paip2 UPSTREAM Paip2 DOWNSTREAM CG7091	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	9494834	2L_9494834_SNP [dm3] 2L_9494834_SNP [dm6]	C	A	2.046e^-4	0.986	UTR_5_PRIME Gdi UPSTREAM CG33298 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8592775	2L_8592775_SNP [dm3] 2L_8592775_SNP [dm6]	A	C	2.046e^-4	0.986	INTRON Sema-1a & 1 other	TF binding site mE1_TFBS_HSA
3R	15301693	3R_15301693_INS [dm3] 3R_19475971_INS [dm6]	T	TAAATT	2.048e^-4	0.986	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	13950941	2R_13950941_SNP [dm3] 2R_18063436_SNP [dm6]	G	A	2.051e^-4	0.986	INTRON CG34386
2R	9123377	2R_9123377_SNP [dm3] 2R_13235872_SNP [dm6]	A	T	2.054e^-4	0.986	UPSTREAM CG4676 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19640003	3R_19640003_SNP [dm3] 3R_23814281_SNP [dm6]	C	T	2.059e^-4	0.986	SYNONYMOUS_CODING eIF4G2 INTRON CG34355 & 1 other
3R	7543571	3R_7543571_SNP [dm3] 3R_11717849_SNP [dm6]	T	A	2.060e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	13922846	3R_13922846_SNP [dm3] 3R_18097124_SNP [dm6]	C	A	2.062e^-4	0.986	INTRON sr
2R	11224150	2R_11224150_INS [dm3] 2R_15336645_INS [dm6]	T	TACT	2.071e^-4	0.986	INTRON Hr51	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	5791568	3L_5791568_SNP [dm3] 3L_5798468_SNP [dm6]	T	A	2.075e^-4	0.986	UTR_3_PRIME S6k DOWNSTREAM S6k
3R	26200895	3R_26200895_SNP [dm3] 3R_30375173_SNP [dm6]	C	T	2.103e^-4	0.986	INTERGENIC
3L	11530313	3L_11530313_SNP [dm3] 3L_11537213_SNP [dm6]	G	T	2.106e^-4	0.986	INTRON Mob2
3L	11252619	3L_11252619_SNP [dm3] 3L_11259519_SNP [dm6]	T	A	2.119e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21898703	3R_21898703_SNP [dm3] 3R_26072981_SNP [dm6]	A	C	2.120e^-4	0.986	INTERGENIC
X	12891794	X_12891794_SNP [dm3] X_12997761_SNP [dm6]	T	A	2.122e^-4	0.986	INTRON rad
X	2599976	X_2599976_SNP [dm3] X_2705943_SNP [dm6]	C	T	2.123e^-4	0.986	DOWNSTREAM CG2680 INTRON eIF2B-beta	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6497479	2L_6497479_SNP [dm3] 2L_6497479_SNP [dm6]	G	A	2.127e^-4	0.986	NON_SYNONYMOUS_CODING CG9550 DOWNSTREAM CG31638
3L	4637660	3L_4637660_SNP [dm3] 3L_4637660_SNP [dm6]	G	T	2.127e^-4	0.986	NON_SYNONYMOUS_CODING axo INTRON axo
2R	6957758	2R_6957758_SNP [dm3] 2R_11070253_SNP [dm6]	A	T	2.148e^-4	0.986	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
4	81454	4_81454_SNP [dm3] 4_60828_SNP [dm6]	A	C	2.152e^-4	0.986	INTRON CR43957 EXON CR43957	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	13378084	3R_13378084_SNP [dm3] 3R_17552362_SNP [dm6]	G	A	2.156e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	10787962	X_10787962_SNP [dm3] X_10893929_SNP [dm6]	C	A	2.165e^-4	0.986	DOWNSTREAM CR44524 & 1 other INTERGENIC
3R	14777830	3R_14777830_SNP [dm3] 3R_18952108_SNP [dm6]	C	T	2.168e^-4	0.986	INTRON CG42613 & 1 other
2R	11808328	2R_11808328_SNP [dm3] 2R_15920823_SNP [dm6]	G	A	2.184e^-4	0.986	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1133386	3L_1133386_SNP [dm3] 3L_1133386_SNP [dm6]	A	C	2.190e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2L	10155233	2L_10155233_SNP [dm3] 2L_10155233_SNP [dm6]	G	A	2.191e^-4	0.986	UTR_3_PRIME CG4839 INTRON CG44153
3R	9370319	3R_9370319_SNP [dm3] 3R_13544597_SNP [dm6]	T	C	2.197e^-4	0.986	SYNONYMOUS_CODING CG31337
3L	6295136	3L_6295136_DEL [dm3] 3L_6302036_DEL [dm6]	ACGTTTCCTA	A	2.197e^-4	0.986	DOWNSTREAM CR45420 INTERGENIC
3R	8782278	3R_8782278_SNP [dm3] 3R_12956556_SNP [dm6]	A	G	2.208e^-4	0.986	INTRON grsm
3L	11228957	3L_11228957_SNP [dm3] 3L_11235857_SNP [dm6]	C	G	2.211e^-4	0.986	NON_SYNONYMOUS_CODING Ir68a DOWNSTREAM CR44718	TF binding site BDTNP1_TFBS_dl
3L	6295133	3L_6295133_SNP [dm3] 3L_6302033_SNP [dm6]	A	T	2.219e^-4	0.986	DOWNSTREAM CR45420 INTERGENIC
2L	11203820	2L_11203820_SNP [dm3] 2L_11203820_SNP [dm6]	C	G	2.219e^-4	0.986	UPSTREAM Ca-beta INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11203827	2L_11203827_SNP [dm3] 2L_11203827_SNP [dm6]	C	G	2.219e^-4	0.986	UPSTREAM Ca-beta INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11203822	2L_11203822_SNP [dm3] 2L_11203822_SNP [dm6]	A	G	2.225e^-4	0.986	UPSTREAM Ca-beta INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6305053	2L_6305053_SNP [dm3] 2L_6305053_SNP [dm6]	G	T	2.234e^-4	0.986	INTRON Ddr
X	8238527	X_8238527_SNP [dm3] X_8344494_SNP [dm6]	A	G	2.236e^-4	0.986	INTRON nAChRalpha3
2L	16198538	2L_16198538_SNP [dm3] 2L_16198538_SNP [dm6]	G	C	2.236e^-4	0.986	INTERGENIC
2L	9162027	2L_9162027_SNP [dm3] 2L_9162027_SNP [dm6]	T	A	2.240e^-4	0.986	INTRON CG32982
2R	7833158	2R_7833158_SNP [dm3] 2R_11945653_SNP [dm6]	C	G	2.241e^-4	0.986	INTRON CG13188
2L	10524768	2L_10524768_SNP [dm3] 2L_10524768_SNP [dm6]	A	G	2.242e^-4	0.986	INTERGENIC
X	10439766	X_10439766_SNP [dm3] X_10545733_SNP [dm6]	A	T	2.249e^-4	0.986	INTRON spri
3R	5427655	3R_5427655_SNP [dm3] 3R_9601933_SNP [dm6]	C	T	2.257e^-4	0.986	INTRON CG8312
2R	18076745	2R_18076745_SNP [dm3] 2R_22189240_SNP [dm6]	C	T	2.262e^-4	0.986	SYNONYMOUS_CODING Vps35 DOWNSTREAM Swim
2R	7635267	2R_7635267_SNP [dm3] 2R_11747762_SNP [dm6]	C	T	2.269e^-4	0.986	INTERGENIC
3L	9303658	3L_9303658_SNP [dm3] 3L_9310558_SNP [dm6]	C	T	2.276e^-4	0.986	INTERGENIC
2R	17173164	2R_17173164_SNP [dm3] 2R_21285659_SNP [dm6]	G	A	2.279e^-4	0.986	UTR_3_PRIME MFS16 & 1 other
X	10787410	X_10787410_SNP [dm3] X_10893377_SNP [dm6]	A	T	2.280e^-4	0.986	DOWNSTREAM CR45617 EXON CR44524
3L	856811	3L_856811_INS [dm3] 3L_856811_INS [dm6]	T	TT	2.286e^-4	0.986	UTR_5_PRIME dpr20	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21951544	3R_21951544_SNP [dm3] 3R_26125822_SNP [dm6]	A	C	2.287e^-4	0.986	UPSTREAM CG14556 INTRON CG31324
3L	9940306	3L_9940306_SNP [dm3] 3L_9947206_SNP [dm6]	T	C	2.304e^-4	0.986	INTRON CG34356
3R	8806141	3R_8806141_SNP [dm3] 3R_12980419_SNP [dm6]	A	C	2.305e^-4	0.986	UTR_3_PRIME CG7091 UPSTREAM Paip2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	14333247	3R_14333247_SNP [dm3] 3R_18507525_SNP [dm6]	G	T	2.306e^-4	0.986	UPSTREAM fru INTRON fru
2L	1687430	2L_1687430_SNP [dm3] 2L_1687430_SNP [dm6]	C	G	2.306e^-4	0.986	INTRON chinmo	TF binding site mE1_TFBS_HSA
3R	8808192	3R_8808192_SNP [dm3] 3R_12982470_SNP [dm6]	T	A	2.318e^-4	0.986	INTRON Paip2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	7535795	3R_7535795_SNP [dm3] 3R_11710073_SNP [dm6]	G	A	2.321e^-4	0.986	INTERGENIC
3L	1108748	3L_1108748_SNP [dm3] 3L_1108748_SNP [dm6]	A	G	2.321e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6513501	2L_6513501_SNP [dm3] 2L_6513501_SNP [dm6]	C	T	2.336e^-4	0.986	INTRON CG31637	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16643706	X_16643706_SNP [dm3] X_16749673_SNP [dm6]	A	G	2.337e^-4	0.986	INTRON CG9634	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7499035	3L_7499035_SNP [dm3] 3L_7505935_SNP [dm6]	A	G	2.339e^-4	0.986	SYNONYMOUS_CODING CG7548	TF binding site mE1_TFBS_cad
3L	2128104	3L_2128104_SNP [dm3] 3L_2128104_SNP [dm6]	A	G	2.343e^-4	0.986	SYNONYMOUS_CODING zormin INTRON zormin
2L	6511526	2L_6511526_SNP [dm3] 2L_6511526_SNP [dm6]	A	G	2.350e^-4	0.986	INTRON CG31637
2L	4280956	2L_4280956_SNP [dm3] 2L_4280956_SNP [dm6]	A	C	2.351e^-4	0.986	INTRON Art2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9235751	2L_9235751_SNP [dm3] 2L_9235751_SNP [dm6]	C	A	2.356e^-4	0.986	DOWNSTREAM tRNA:CR31885 INTRON tai
3L	19689002	3L_19689002_SNP [dm3] 3L_19695902_SNP [dm6]	T	A	2.356e^-4	0.986	UPSTREAM verm INTERGENIC
3R	2493820	3R_2493820_SNP [dm3] 3R_6668098_SNP [dm6]	G	A	2.385e^-4	0.986	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4859870	2L_4859870_SNP [dm3] 2L_4859870_SNP [dm6]	G	A	2.394e^-4	0.986	INTRON pog
2L	12672136	2L_12672136_SNP [dm3] 2L_12672136_SNP [dm6]	T	A	2.397e^-4	0.986	INTRON pdm2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	5904422	3L_5904422_SNP [dm3] 3L_5911322_SNP [dm6]	C	T	2.399e^-4	0.986	INTRON CG13288
X	10787418	X_10787418_SNP [dm3] X_10893385_SNP [dm6]	A	T	2.405e^-4	0.986	DOWNSTREAM CR45617 EXON CR44524
2R	10671163	2R_10671163_SNP [dm3] 2R_14783658_SNP [dm6]	C	T	2.413e^-4	0.986	INTRON kn	TF binding site mE1_TFBS_chinmo
X	13040642	X_13040642_SNP [dm3] X_13146609_SNP [dm6]	T	C	2.422e^-4	0.986	INTRON CG32645
2R	8594615	2R_8594615_SNP [dm3] 2R_12707110_SNP [dm6]	T	A	2.430e^-4	0.986	INTRON CG42663
X	4688745	X_4688745_SNP [dm3] X_4794712_SNP [dm6]	C	T	2.431e^-4	0.986	INTERGENIC
2L	2552410	2L_2552410_SNP [dm3] 2L_2552410_SNP [dm6]	T	A	2.443e^-4	0.986	INTRON CG3515
X	4215124	X_4215124_SNP [dm3] X_4321091_SNP [dm6]	G	T	2.452e^-4	0.986	SYNONYMOUS_CODING CG2982 DOWNSTREAM mRpL33	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7380151	3R_7380151_SNP [dm3] 3R_11554429_SNP [dm6]	C	G	2.463e^-4	0.986	NON_SYNONYMOUS_CODING CG14708
X	16643544	X_16643544_SNP [dm3] X_16749511_SNP [dm6]	A	G	2.470e^-4	0.986	INTRON CG9634	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9162034	2L_9162034_SNP [dm3] 2L_9162034_SNP [dm6]	G	C	2.471e^-4	0.986	INTRON CG32982
2R	5774389	2R_5774389_SNP [dm3] 2R_9886884_SNP [dm6]	C	G	2.477e^-4	0.986	UPSTREAM CG1513 & 1 other INTRON CG1513
3R	9680238	3R_9680238_SNP [dm3] 3R_13854516_SNP [dm6]	T	C	2.481e^-4	0.986	DOWNSTREAM CG14362 INTERGENIC
2R	2450564	2R_2450564_SNP [dm3] 2R_6563059_SNP [dm6]	C	G	2.481e^-4	0.986	INTRON jing	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16213498	3R_16213498_SNP [dm3] 3R_20387776_SNP [dm6]	G	A	2.481e^-4	0.986	INTRON Gfrl
3L	7555935	3L_7555935_SNP [dm3] 3L_7562835_SNP [dm6]	G	A	2.485e^-4	0.986	START_GAINED frac UTR_5_PRIME frac INTRON frac	TF binding site BDTNP1_TFBS_twi
3R	7401534	3R_7401534_SNP [dm3] 3R_11575812_SNP [dm6]	T	C	2.488e^-4	0.986	UTR_3_PRIME Mrp4 DOWNSTREAM CG6790
2L	6494997	2L_6494997_SNP [dm3] 2L_6494997_SNP [dm6]	C	T	2.493e^-4	0.986	SYNONYMOUS_CODING CG31638 UPSTREAM CG9547	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	6090390	2R_6090390_SNP [dm3] 2R_10202885_SNP [dm6]	G	T	2.497e^-4	0.986	INTERGENIC
2R	9573169	2R_9573169_SNP [dm3] 2R_13685664_SNP [dm6]	T	C	2.503e^-4	0.986	INTRON fas
3L	9514716	3L_9514716_SNP [dm3] 3L_9521616_SNP [dm6]	G	C	2.506e^-4	0.986	INTRON CG33700
3R	7387291	3R_7387291_SNP [dm3] 3R_11561569_SNP [dm6]	G	C	2.513e^-4	0.986	INTRON sea & 1 other
X	14580401	X_14580401_SNP [dm3] X_14686368_SNP [dm6]	T	C	2.527e^-4	0.986	UTR_3_PRIME NetB
2R	10018530	2R_10018530_SNP [dm3] 2R_14131025_SNP [dm6]	A	C	2.528e^-4	0.986	INTRON Prosap	TF binding site BDTNP1_TFBS_dl
3R	18232828	3R_18232828_SNP [dm3] 3R_22407106_SNP [dm6]	C	T	2.529e^-4	0.986	INTRON CG13855
3L	6295124	3L_6295124_DEL [dm3] 3L_6302024_DEL [dm6]	ACCAG	A	2.546e^-4	0.986	DOWNSTREAM CR45420 INTERGENIC
2R	15895526	2R_15895526_INS [dm3] 2R_20008021_INS [dm6]	G	GG	2.551e^-4	0.986	DOWNSTREAM CR44628 INTERGENIC
3L	601746	3L_601746_SNP [dm3] 3L_601746_SNP [dm6]	G	A	2.553e^-4	0.986	INTRON CG13893	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10776487	2R_10776487_SNP [dm3] 2R_14888982_SNP [dm6]	C	T	2.568e^-4	0.986	UTR_5_PRIME Cyp6a8	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	3163845	3L_3163845_SNP [dm3] 3L_3163845_SNP [dm6]	T	C	2.568e^-4	0.986	UTR_3_PRIME rasp & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	11214152	2R_11214152_SNP [dm3] 2R_15326647_SNP [dm6]	C	T	2.578e^-4	0.986	UPSTREAM CG8157 DOWNSTREAM CG8160 INTERGENIC
3R	20290551	3R_20290551_SNP [dm3] 3R_24464829_SNP [dm6]	C	T	2.582e^-4	0.986	UPSTREAM CR45649 INTERGENIC
X	10903526	X_10903526_SNP [dm3] X_11009493_SNP [dm6]	A	C	2.583e^-4	0.986	INTRON CG42339
2R	4465787	2R_4465787_SNP [dm3] 2R_8578282_SNP [dm6]	T	C	2.586e^-4	0.986	START_GAINED CG42326 UTR_5_PRIME CG42326 INTRON CG42326
3L	20100602	3L_20100602_SNP [dm3] 3L_20107502_SNP [dm6]	A	T	2.596e^-4	0.986	UTR_3_PRIME CG14185 DOWNSTREAM Ir76b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18879485	2R_18879485_SNP [dm3] 2R_22991962_SNP [dm6]	G	A	2.599e^-4	0.986	INTRON twi
X	8156906	X_8156906_SNP [dm3] X_8262873_SNP [dm6]	G	T	2.603e^-4	0.986	INTRON CG1632	TF binding site BDTNP1_TFBS_da
3R	8788856	3R_8788856_SNP [dm3] 3R_12963134_SNP [dm6]	A	G	2.631e^-4	0.986	UTR_3_PRIME Spc25 UPSTREAM Cyp304a1 INTRON grsm
3L	12327624	3L_12327624_SNP [dm3] 3L_12334524_SNP [dm6]	T	C	2.638e^-4	0.986	SYNONYMOUS_CODING CG32105	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14662691	X_14662691_SNP [dm3] X_14768658_SNP [dm6]	C	A	2.641e^-4	0.986	INTERGENIC
2L	9228898	2L_9228898_SNP [dm3] 2L_9228898_SNP [dm6]	C	T	2.648e^-4	0.986	INTRON tai
X	8238459	X_8238459_DEL [dm3] X_8344426_DEL [dm6]	TAGAGTA	T	2.650e^-4	0.986	INTRON nAChRalpha3
X	16345268	X_16345268_SNP [dm3] X_16451235_SNP [dm6]	A	C	2.659e^-4	0.986	INTRON Rbp2	TF binding site mE1_TFBS_HSA
3R	23888607	3R_23888607_SNP [dm3] 3R_28062885_SNP [dm6]	C	T	2.663e^-4	0.986	INTRON CG34362
4	110335	4_110335_SNP [dm3] 4_89709_SNP [dm6]	A	G	2.667e^-4	0.986	UPSTREAM pan INTRON pan	TF binding site mE1_TFBS_bab1
2L	4526747	2L_4526747_SNP [dm3] 2L_4526747_SNP [dm6]	A	C	2.668e^-4	0.986	NON_SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4563212	X_4563212_SNP [dm3] X_4669179_SNP [dm6]	T	C	2.668e^-4	0.986	INTRON rap	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	4791873	2R_4791873_SNP [dm3] 2R_8904368_SNP [dm6]	T	G	2.669e^-4	0.986	UTR_3_PRIME Ggamma1 DOWNSTREAM CG8258
3R	16213984	3R_16213984_SNP [dm3] 3R_20388262_SNP [dm6]	A	G	2.670e^-4	0.986	INTRON Gfrl
3R	8808272	3R_8808272_SNP [dm3] 3R_12982550_SNP [dm6]	C	A	2.671e^-4	0.986	INTRON Paip2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	4956403	3R_4956403_INS [dm3] 3R_9130681_INS [dm6]	A	AA	2.682e^-4	0.986	INTRON pum
3R	7380267	3R_7380267_SNP [dm3] 3R_11554545_SNP [dm6]	G	A	2.683e^-4	0.986	SYNONYMOUS_CODING CG14708
3R	7383437	3R_7383437_DEL [dm3] 3R_11557715_DEL [dm6]	GG	T	2.687e^-4	0.986	UPSTREAM CG10898 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17160645	2R_17160645_SNP [dm3] 2R_21273140_SNP [dm6]	C	G	2.695e^-4	0.986	INTRON Rgk3
3R	26774748	3R_26774748_SNP [dm3] 3R_30949026_SNP [dm6]	C	A	2.696e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17173354	2R_17173354_SNP [dm3] 2R_21285849_SNP [dm6]	G	A	2.707e^-4	0.986	SYNONYMOUS_CODING CG10505 DOWNSTREAM MFS16
3L	1134155	3L_1134155_SNP [dm3] 3L_1134155_SNP [dm6]	T	A	2.710e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs
2R	16986459	2R_16986459_SNP [dm3] 2R_21098954_SNP [dm6]	G	A	2.715e^-4	0.986	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo
2R	9801401	2R_9801401_SNP [dm3] 2R_13913896_SNP [dm6]	A	G	2.718e^-4	0.986	INTRON shot	TF binding site mE1_TFBS_inv
2L	2395473	2L_2395473_SNP [dm3] 2L_2395473_SNP [dm6]	T	G	2.728e^-4	0.986	INTRON VGlut
3L	10827884	3L_10827884_INS [dm3] 3L_10834784_INS [dm6]	T	TAGACCATCTCTATGAAAAT...	2.733e^-4	0.986	INTERGENIC
X	14493016	X_14493016_SNP [dm3] X_14598983_SNP [dm6]	A	G	2.734e^-4	0.986	INTRON CG9413
2L	3172315	2L_3172315_SNP [dm3] 2L_3172315_SNP [dm6]	A	G	2.735e^-4	0.986	DOWNSTREAM tRNA:S7:23Ea & 1 other EXON CR44003	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	5397697	2R_5397697_SNP [dm3] 2R_9510192_SNP [dm6]	C	A	2.738e^-4	0.986	INTRON brp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	7611702	2L_7611702_SNP [dm3] 2L_7611702_SNP [dm6]	A	T	2.743e^-4	0.986	INTRON CG6739	TF binding site BDTNP1_TFBS_twi
X	12374637	X_12374637_SNP [dm3] X_12480604_SNP [dm6]	T	C	2.747e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12467044	3L_12467044_SNP [dm3] 3L_12473944_SNP [dm6]	T	C	2.749e^-4	0.986	SYNONYMOUS_CODING CG10616 DOWNSTREAM CG10663	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9615209	2R_9615209_SNP [dm3] 2R_13727704_SNP [dm6]	T	A	2.757e^-4	0.986	INTRON fas
X	12374389	X_12374389_SNP [dm3] X_12480356_SNP [dm6]	C	T	2.758e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7696008	2L_7696008_SNP [dm3] 2L_7696008_SNP [dm6]	G	C	2.762e^-4	0.986	INTRON Tep2
3R	7422846	3R_7422846_SNP [dm3] 3R_11597124_SNP [dm6]	G	T	2.762e^-4	0.986	INTRON Jupiter
3L	9961688	3L_9961688_SNP [dm3] 3L_9968588_SNP [dm6]	T	G	2.766e^-4	0.986	START_GAINED Nc UTR_5_PRIME Nc UPSTREAM CG6685	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA
2L	16634084	2L_16634084_SNP [dm3] 2L_16634084_SNP [dm6]	T	G	2.771e^-4	0.986	INTRON CG42389
3L	7498982	3L_7498982_SNP [dm3] 3L_7505882_SNP [dm6]	T	G	2.777e^-4	0.986	NON_SYNONYMOUS_CODING CG7548	TF binding site mE1_TFBS_cad
3L	2658963	3L_2658963_SNP [dm3] 3L_2658963_SNP [dm6]	T	G	2.779e^-4	0.986	SYNONYMOUS_CODING Fife UTR_3_PRIME Fife UPSTREAM CG33233	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo
2R	8594616	2R_8594616_SNP [dm3] 2R_12707111_SNP [dm6]	C	A	2.794e^-4	0.986	INTRON CG42663
2L	6302849	2L_6302849_SNP [dm3] 2L_6302849_SNP [dm6]	A	G	2.803e^-4	0.986	INTRON Ddr
3L	8316922	3L_8316922_SNP [dm3] 3L_8323822_SNP [dm6]	C	A	2.805e^-4	0.986	INTERGENIC
X	2599994	X_2599994_DEL [dm3] X_2705961_DEL [dm6]	TT	T	2.807e^-4	0.986	DOWNSTREAM CG2680 INTRON eIF2B-beta	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19651488	3R_19651488_SNP [dm3] 3R_23825766_SNP [dm6]	T	C	2.810e^-4	0.986	UPSTREAM snRNA:U1:95Cc INTRON CG34355 EXON CR43285	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	4815781	2L_4815781_SNP [dm3] 2L_4815781_SNP [dm6]	A	G	2.811e^-4	0.986	SYNONYMOUS_STOP CG15629 UTR_3_PRIME CG3225
2L	3045642	2L_3045642_SNP [dm3] 2L_3045642_SNP [dm6]	T	C	2.814e^-4	0.986	INTRON v_2_k05816
2L	4761921	2L_4761921_SNP [dm3] 2L_4761921_SNP [dm6]	G	C	2.818e^-4	0.986	UPSTREAM CG42523 INTRON CG15630
X	7683289	X_7683289_DEL [dm3] X_7789256_DEL [dm6]	TT	G	2.825e^-4	0.986	INTERGENIC
2R	6343012	2R_6343012_SNP [dm3] 2R_10455507_SNP [dm6]	A	C	2.827e^-4	0.986	INTRON Galphao & 1 other
X	5011846	X_5011846_SNP [dm3] X_5117813_SNP [dm6]	T	A	2.832e^-4	0.986	INTRON rg & 1 other
X	9439337	X_9439337_SNP [dm3] X_9545304_SNP [dm6]	T	A	2.834e^-4	0.986	INTRON CG32700	TF binding site mE1_TFBS_HSA
3R	4003133	3R_4003133_SNP [dm3] 3R_8177411_SNP [dm6]	C	G	2.835e^-4	0.986	INTRON grn
3R	7783168	3R_7783168_SNP [dm3] 3R_11957446_SNP [dm6]	T	A	2.838e^-4	0.986	UPSTREAM Hsp70Aa INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2R	9123499	2R_9123499_DEL [dm3] 2R_13235994_DEL [dm6]	GG	G	2.856e^-4	0.986	UTR_5_PRIME CG4676 UPSTREAM CG4670	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10903527	X_10903527_SNP [dm3] X_11009494_SNP [dm6]	A	C	2.858e^-4	0.986	INTRON CG42339
3L	869194	3L_869194_SNP [dm3] 3L_869194_SNP [dm6]	C	T	2.860e^-4	0.986	SYNONYMOUS_CODING CG12502 INTRON CG12502	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9514598	3L_9514598_DEL [dm3] 3L_9521498_DEL [dm6]	CTACAAGGCGC...	T	2.861e^-4	0.986	INTRON CG33700
3R	26593750	3R_26593750_SNP [dm3] 3R_30768028_SNP [dm6]	T	C	2.862e^-4	0.986	INTRON zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
X	8238516	X_8238516_SNP [dm3] X_8344483_SNP [dm6]	G	A	2.879e^-4	0.986	INTRON nAChRalpha3
3L	1112572	3L_1112572_SNP [dm3] 3L_1112572_SNP [dm6]	A	T	2.880e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_HSA
X	18973830	X_18973830_SNP [dm3] X_19079797_SNP [dm6]	A	G	2.883e^-4	0.986	INTERGENIC
2R	15289081	2R_15289081_SNP [dm3] 2R_19401576_SNP [dm6]	A	G	2.887e^-4	0.986	DOWNSTREAM hts & 1 other INTRON hts
2R	9573196	2R_9573196_SNP [dm3] 2R_13685691_SNP [dm6]	A	G	2.888e^-4	0.986	INTRON fas
3L	12467035	3L_12467035_SNP [dm3] 3L_12473935_SNP [dm6]	T	C	2.890e^-4	0.986	SYNONYMOUS_CODING CG10616 DOWNSTREAM CG10663	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3840945	3L_3840945_SNP [dm3] 3L_3840945_SNP [dm6]	T	C	2.891e^-4	0.986	UTR_3_PRIME enc
3L	16513834	3L_16513834_SNP [dm3] 3L_16520734_SNP [dm6]	G	T	2.894e^-4	0.986	INTRON CG43373
2R	18552034	2R_18552034_INS [dm3] 2R_22664529_INS [dm6]	G	AGACTTGGTTTGTATCACAA...	2.904e^-4	0.986	DOWNSTREAM CG4250 INTERGENIC
3R	22536544	3R_22536544_SNP [dm3] 3R_26710822_SNP [dm6]	C	A	2.909e^-4	0.986	INTRON amon
2R	9791486	2R_9791486_SNP [dm3] 2R_13903981_SNP [dm6]	A	G	2.916e^-4	0.986	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	10903448	X_10903448_SNP [dm3] X_11009415_SNP [dm6]	T	C	2.917e^-4	0.986	INTRON CG42339
X	10903465	X_10903465_SNP [dm3] X_11009432_SNP [dm6]	G	T	2.917e^-4	0.986	INTRON CG42339
4	85538	4_85538_SNP [dm3] 4_64912_SNP [dm6]	T	A	2.925e^-4	0.986	DOWNSTREAM RpS3A & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2L	10526019	2L_10526019_SNP [dm3] 2L_10526019_SNP [dm6]	C	T	2.931e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6327580	2L_6327580_SNP [dm3] 2L_6327580_SNP [dm6]	G	A	2.948e^-4	0.986	NON_SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9545858	3L_9545858_SNP [dm3] 3L_9552758_SNP [dm6]	T	C	2.952e^-4	0.986	INTRON CG42673
2R	18438412	2R_18438412_SNP [dm3] 2R_22550907_SNP [dm6]	G	A	2.955e^-4	0.986	NON_SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18394967	3R_18394967_SNP [dm3] 3R_22569245_SNP [dm6]	A	C	2.956e^-4	0.986	UPSTREAM CG33110 INTERGENIC	TF binding site mE1_TFBS_inv
X	8238515	X_8238515_SNP [dm3] X_8344482_SNP [dm6]	C	T	2.958e^-4	0.986	INTRON nAChRalpha3
3R	4129207	3R_4129207_SNP [dm3] 3R_8303485_SNP [dm6]	T	C	2.965e^-4	0.986	SYNONYMOUS_CODING nac DOWNSTREAM mRpL1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	9214582	2L_9214582_SNP [dm3] 2L_9214582_SNP [dm6]	T	A	2.965e^-4	0.986	INTRON tai
2R	18880386	2R_18880386_SNP [dm3] 2R_22992863_SNP [dm6]	T	C	2.967e^-4	0.986	DOWNSTREAM CG9896 INTRON twi
3L	2867025	3L_2867025_SNP [dm3] 3L_2867025_SNP [dm6]	G	T	2.989e^-4	0.986	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21638647	3R_21638647_SNP [dm3] 3R_25812925_SNP [dm6]	T	C	2.995e^-4	0.986	SYNONYMOUS_CODING Acam UTR_3_PRIME CG17770
3L	9514624	3L_9514624_SNP [dm3] 3L_9521524_SNP [dm6]	A	G	3.005e^-4	0.986	INTRON CG33700
3L	9514658	3L_9514658_SNP [dm3] 3L_9521558_SNP [dm6]	G	A	3.005e^-4	0.986	INTRON CG33700
X	2600115	X_2600115_SNP [dm3] X_2706082_SNP [dm6]	G	A	3.013e^-4	0.986	UTR_3_PRIME eIF2B-beta DOWNSTREAM CG2680	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4687950	X_4687950_SNP [dm3] X_4793917_SNP [dm6]	A	G	3.021e^-4	0.986	INTERGENIC
3R	8804353	3R_8804353_SNP [dm3] 3R_12978631_SNP [dm6]	A	C	3.025e^-4	0.986	INTRON CG7091	TF binding site mE1_TFBS_cad
X	11950172	X_11950172_SNP [dm3] X_12056139_SNP [dm6]	T	C	3.037e^-4	0.986	SYNONYMOUS_CODING Uch-L5R INTRON CR43960 & 1 other	TF binding site mE1_TFBS_HSA
2L	6808720	2L_6808720_SNP [dm3] 2L_6808720_SNP [dm6]	A	G	3.038e^-4	0.986	INTERGENIC
2L	7247441	2L_7247441_SNP [dm3] 2L_7247441_SNP [dm6]	G	T	3.043e^-4	0.986	INTRON Ndae1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2989253	3L_2989253_SNP [dm3] 3L_2989253_SNP [dm6]	T	G	3.047e^-4	0.986	INTERGENIC
3L	2867036	3L_2867036_SNP [dm3] 3L_2867036_SNP [dm6]	G	A	3.084e^-4	0.986	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18232830	3R_18232830_SNP [dm3] 3R_22407108_SNP [dm6]	T	C	3.085e^-4	0.986	INTRON CG13855
X	10861919	X_10861919_SNP [dm3] X_10967886_SNP [dm6]	A	G	3.104e^-4	0.986	UTR_3_PRIME CG42339 UPSTREAM C901	TF binding site mE1_TFBS_inv
3R	16044040	3R_16044040_SNP [dm3] 3R_20218318_SNP [dm6]	T	C	3.107e^-4	0.986	INTRON Nlg4
3R	24265755	3R_24265755_SNP [dm3] 3R_28440033_SNP [dm6]	G	T	3.111e^-4	0.986	INTRON beat-VI
3R	24265756	3R_24265756_DEL [dm3] 3R_28440034_DEL [dm6]	TACTTATCCGC...	T	3.111e^-4	0.986	INTRON beat-VI
2L	1615111	2L_1615111_SNP [dm3] 2L_1615111_SNP [dm6]	C	T	3.116e^-4	0.986	UPSTREAM RFeSP INTERGENIC
3R	3952072	3R_3952072_SNP [dm3] 3R_8126350_SNP [dm6]	T	C	3.122e^-4	0.986	UTR_5_PRIME CG9667 UPSTREAM Gie & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
4	72351	4_72351_SNP [dm3] 4_51725_SNP [dm6]	G	A	3.124e^-4	0.986	SYNONYMOUS_CODING ci	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8068388	X_8068388_SNP [dm3] X_8174355_SNP [dm6]	C	T	3.147e^-4	0.986	INTRON slpr
2L	16566390	2L_16566390_SNP [dm3] 2L_16566390_SNP [dm6]	A	G	3.164e^-4	0.986	INTRON CG42389
2R	8124261	2R_8124261_SNP [dm3] 2R_12236756_SNP [dm6]	G	A	3.169e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	15107883	3L_15107883_SNP [dm3] 3L_15114783_SNP [dm6]	T	A	3.170e^-4	0.986	INTRON CG13458
2L	6497754	2L_6497754_SNP [dm3] 2L_6497754_SNP [dm6]	T	A	3.171e^-4	0.986	UPSTREAM CG31637 DOWNSTREAM CG31638 INTRON CG9550
X	2548261	X_2548261_SNP [dm3] X_2654228_SNP [dm6]	C	T	3.175e^-4	0.986	INTRON sgg
2L	8329197	2L_8329197_SNP [dm3] 2L_8329197_SNP [dm6]	C	G	3.184e^-4	0.986	INTRON CG14275	TF binding site mE1_TFBS_Trl
3R	14152517	3R_14152517_SNP [dm3] 3R_18326795_SNP [dm6]	T	C	3.184e^-4	0.986	INTRON CG31235
2L	10700380	2L_10700380_SNP [dm3] 2L_10700380_SNP [dm6]	A	G	3.184e^-4	0.986	SYNONYMOUS_CODING Lip1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16724960	3R_16724960_SNP [dm3] 3R_20899238_SNP [dm6]	T	C	3.195e^-4	0.986	INTERGENIC
3R	13560424	3R_13560424_DEL [dm3] 3R_17734702_DEL [dm6]	TATATAT	G	3.201e^-4	0.986	DOWNSTREAM CG14321 INTERGENIC
2L	16229331	2L_16229331_SNP [dm3] 2L_16229331_SNP [dm6]	G	T	3.203e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11733776	3L_11733776_SNP [dm3] 3L_11740676_SNP [dm6]	T	G	3.215e^-4	0.986	INTRON CG6024
2R	9571587	2R_9571587_SNP [dm3] 2R_13684082_SNP [dm6]	T	C	3.233e^-4	0.986	INTRON fas
3L	8316923	3L_8316923_SNP [dm3] 3L_8323823_SNP [dm6]	C	A	3.234e^-4	0.986	INTERGENIC
3R	16215329	3R_16215329_SNP [dm3] 3R_20389607_SNP [dm6]	A	T	3.237e^-4	0.986	INTRON Gfrl
3R	11868520	3R_11868520_SNP [dm3] 3R_16042798_SNP [dm6]	T	A	3.244e^-4	0.986	UPSTREAM CG10264 INTERGENIC
3L	9887889	3L_9887889_SNP [dm3] 3L_9894789_SNP [dm6]	A	G	3.245e^-4	0.986	UPSTREAM CG6709 & 1 other DOWNSTREAM CG6707 INTERGENIC
X	2389624	X_2389624_SNP [dm3] X_2495591_SNP [dm6]	A	G	3.246e^-4	0.986	INTRON trol	TF binding site mE1_TFBS_sens
3R	4299208	3R_4299208_SNP [dm3] 3R_8473486_SNP [dm6]	T	C	3.248e^-4	0.986	INTRON CG45263
2L	948773	2L_948773_SNP [dm3] 2L_948773_SNP [dm6]	A	T	3.249e^-4	0.986	INTRON CG4341
3L	9536310	3L_9536310_SNP [dm3] 3L_9543210_SNP [dm6]	C	T	3.255e^-4	0.986	NON_SYNONYMOUS_CODING Ir67a
3R	8820349	3R_8820349_SNP [dm3] 3R_12994627_SNP [dm6]	C	A	3.260e^-4	0.986	SYNONYMOUS_CODING yellow-f2 UPSTREAM CG7488
2L	18443282	2L_18443282_SNP [dm3] 2L_18443282_SNP [dm6]	A	G	3.264e^-4	0.986	UPSTREAM RpS26 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_run
X	13860783	X_13860783_SNP [dm3] X_13966750_SNP [dm6]	C	A	3.278e^-4	0.986	INTRON mamo
X	10903440	X_10903440_SNP [dm3] X_11009407_SNP [dm6]	G	A	3.279e^-4	0.986	INTRON CG42339
2R	12042270	2R_12042270_SNP [dm3] 2R_16154765_SNP [dm6]	A	G	3.279e^-4	0.986	INTRON lbk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_zfh1
X	20836970	X_20836970_SNP [dm3] X_20965943_SNP [dm6]	C	T	3.285e^-4	0.986	UPSTREAM CG1304 INTERGENIC
3L	4518928	3L_4518928_SNP [dm3] 3L_4518928_SNP [dm6]	G	A	3.293e^-4	0.986	INTRON Tie
X	3444827	X_3444827_SNP [dm3] X_3550794_SNP [dm6]	A	G	3.296e^-4	0.986	INTRON CG32791
2R	14667014	2R_14667014_SNP [dm3] 2R_18779509_SNP [dm6]	A	G	3.304e^-4	0.986	INTERGENIC
X	2984321	X_2984321_SNP [dm3] X_3090288_SNP [dm6]	T	C	3.304e^-4	0.986	INTRON kirre
3L	1741441	3L_1741441_SNP [dm3] 3L_1741441_SNP [dm6]	G	A	3.307e^-4	0.986	UPSTREAM Gk INTRON Gk	TF binding site mE1_TFBS_cad
X	4425608	X_4425608_SNP [dm3] X_4531575_SNP [dm6]	C	T	3.308e^-4	0.986	NON_SYNONYMOUS_CODING CG3556 INTRON CR32773
3L	2545312	3L_2545312_SNP [dm3] 3L_2545312_SNP [dm6]	A	C	3.313e^-4	0.986	INTRON Spn
2L	6496620	2L_6496620_SNP [dm3] 2L_6496620_SNP [dm6]	T	A	3.316e^-4	0.986	UTR_3_PRIME CG31638 UPSTREAM CG9550
3L	12036461	3L_12036461_SNP [dm3] 3L_12043361_SNP [dm6]	A	G	3.317e^-4	0.986	SYNONYMOUS_CODING CG6793 INTRON rols	TF binding site mE1_TFBS_chinmo
2L	5968516	2L_5968516_SNP [dm3] 2L_5968516_SNP [dm6]	A	C	3.325e^-4	0.986	UPSTREAM Ucp4C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15289811	2R_15289811_SNP [dm3] 2R_19402306_SNP [dm6]	G	A	3.327e^-4	0.986	SYNONYMOUS_CODING hts DOWNSTREAM CR43430 INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	8238483	X_8238483_SNP [dm3] X_8344450_SNP [dm6]	T	A	3.330e^-4	0.986	INTRON nAChRalpha3
X	4392259	X_4392259_SNP [dm3] X_4498226_SNP [dm6]	C	A	3.333e^-4	0.986	INTRON CR32773	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3R	7396101	3R_7396101_SNP [dm3] 3R_11570379_SNP [dm6]	A	G	3.345e^-4	0.986	INTRON Mrp4
2R	11214596	2R_11214596_SNP [dm3] 2R_15327091_SNP [dm6]	T	C	3.380e^-4	0.986	UPSTREAM CG8157 DOWNSTREAM CG8160 INTERGENIC
3L	9830927	3L_9830927_SNP [dm3] 3L_9837827_SNP [dm6]	C	T	3.381e^-4	0.986	SYNONYMOUS_CODING Cdk8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13876198	X_13876198_SNP [dm3] X_13982165_SNP [dm6]	T	G	3.396e^-4	0.986	INTRON mamo
X	13573369	X_13573369_SNP [dm3] X_13679336_SNP [dm6]	A	C	3.404e^-4	0.986	INTRON CG12177	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	18323054	X_18323054_SNP [dm3] X_18429021_SNP [dm6]	G	A	3.411e^-4	0.986	INTERGENIC
X	2403117	X_2403117_DEL [dm3] X_2509084_DEL [dm6]	GCGC	TTA	3.418e^-4	0.986	INTRON trol
2L	2557911	2L_2557911_DEL [dm3] 2L_2557911_DEL [dm6]	CC	C	3.419e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_inv
3R	15079179	3R_15079179_SNP [dm3] 3R_19253457_SNP [dm6]	G	C	3.420e^-4	0.986	INTERGENIC
2R	10018535	2R_10018535_SNP [dm3] 2R_14131030_SNP [dm6]	C	T	3.431e^-4	0.986	INTRON Prosap	TF binding site BDTNP1_TFBS_dl
2L	15294155	2L_15294155_SNP [dm3] 2L_15294155_SNP [dm6]	C	G	3.442e^-4	0.986	DOWNSTREAM ms_2_35Ci INTERGENIC
3R	8755108	3R_8755108_SNP [dm3] 3R_12929386_SNP [dm6]	C	A	3.445e^-4	0.986	INTRON beat-Vb
3R	14777846	3R_14777846_SNP [dm3] 3R_18952124_SNP [dm6]	A	G	3.451e^-4	0.986	INTRON CG42613 & 1 other
2L	6507261	2L_6507261_SNP [dm3] 2L_6507261_SNP [dm6]	G	A	3.465e^-4	0.986	DOWNSTREAM CR44775 INTRON CG31637
2L	6503233	2L_6503233_SNP [dm3] 2L_6503233_SNP [dm6]	A	T	3.474e^-4	0.986	INTRON CG31637	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	26625491	3R_26625491_SNP [dm3] 3R_30799769_SNP [dm6]	T	G	3.478e^-4	0.986	INTRON wts
2R	9123901	2R_9123901_SNP [dm3] 2R_13236396_SNP [dm6]	C	G	3.485e^-4	0.986	SYNONYMOUS_CODING CG4676 DOWNSTREAM CG4679	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20858744	X_20858744_SNP [dm3] X_20987717_SNP [dm6]	G	C	3.485e^-4	0.986	INTERGENIC
2L	4815897	2L_4815897_SNP [dm3] 2L_4815897_SNP [dm6]	A	G	3.492e^-4	0.986	DOWNSTREAM CG15629 INTRON CG3225
2L	16634085	2L_16634085_SNP [dm3] 2L_16634085_SNP [dm6]	A	C	3.504e^-4	0.986	INTRON CG42389
2L	5223569	2L_5223569_SNP [dm3] 2L_5223569_SNP [dm6]	G	T	3.508e^-4	0.986	INTRON tkv
3L	2982284	3L_2982284_SNP [dm3] 3L_2982284_SNP [dm6]	A	G	3.509e^-4	0.986	SYNONYMOUS_CODING CG2107	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	867738	3L_867738_SNP [dm3] 3L_867738_SNP [dm6]	A	T	3.517e^-4	0.986	INTRON CG12502	TF binding site mE1_TFBS_chinmo
4	184479	4_184479_SNP [dm3] 4_163853_SNP [dm6]	T	C	3.519e^-4	0.986	NON_SYNONYMOUS_CODING CG33978
2R	17353100	2R_17353100_SNP [dm3] 2R_21465595_SNP [dm6]	T	A	3.520e^-4	0.986	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10351422	3L_10351422_SNP [dm3] 3L_10358322_SNP [dm6]	C	T	3.524e^-4	0.986	INTRON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9631897	2R_9631897_SNP [dm3] 2R_13744392_SNP [dm6]	C	T	3.526e^-4	0.986	INTRON fas
3L	11733764	3L_11733764_SNP [dm3] 3L_11740664_SNP [dm6]	C	T	3.527e^-4	0.986	INTRON CG6024
2R	18076526	2R_18076526_SNP [dm3] 2R_22189021_SNP [dm6]	C	T	3.529e^-4	0.986	SYNONYMOUS_CODING Vps35 DOWNSTREAM Swim
2L	6502350	2L_6502350_SNP [dm3] 2L_6502350_SNP [dm6]	A	T	3.541e^-4	0.986	INTRON CG31637
2L	16566035	2L_16566035_SNP [dm3] 2L_16566035_SNP [dm6]	T	C	3.544e^-4	0.986	INTRON CG42389
3L	2545317	3L_2545317_SNP [dm3] 3L_2545317_SNP [dm6]	T	A	3.545e^-4	0.986	INTRON Spn
3L	856292	3L_856292_SNP [dm3] 3L_856292_SNP [dm6]	G	A	3.551e^-4	0.986	INTRON dpr20
2L	5189190	2L_5189190_SNP [dm3] 2L_5189190_SNP [dm6]	C	A	3.553e^-4	0.986	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA
2R	17688677	2R_17688677_SNP [dm3] 2R_21801172_SNP [dm6]	G	T	3.556e^-4	0.986	UPSTREAM CG4386 INTERGENIC
X	10932689	X_10932689_SNP [dm3] X_11038656_SNP [dm6]	G	A	3.557e^-4	0.986	UPSTREAM CG42339 INTRON CG42339
2L	3071554	2L_3071554_SNP [dm3] 2L_3071554_SNP [dm6]	T	A	3.561e^-4	0.986	INTRON toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18669276	2L_18669276_SNP [dm3] 2L_18669276_SNP [dm6]	T	A	3.562e^-4	0.986	SYNONYMOUS_CODING CG43338	TF binding site mE1_TFBS_cad
2L	12426809	2L_12426809_SNP [dm3] 2L_12426809_SNP [dm6]	A	C	3.589e^-4	0.986	UTR_3_PRIME CG5446 DOWNSTREAM CG5446 & 1 other
3L	2270392	3L_2270392_SNP [dm3] 3L_2270392_SNP [dm6]	G	C	3.589e^-4	0.986	NON_SYNONYMOUS_CODING yellow-g DOWNSTREAM CG32302	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	9831278	3L_9831278_SNP [dm3] 3L_9838178_SNP [dm6]	C	G	3.596e^-4	0.986	SYNONYMOUS_CODING Cdk8 DOWNSTREAM RasGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6507966	2L_6507966_SNP [dm3] 2L_6507966_SNP [dm6]	G	A	3.599e^-4	0.986	INTRON CG31637 EXON CR44775
3R	10917628	3R_10917628_SNP [dm3] 3R_15091906_SNP [dm6]	G	A	3.601e^-4	0.986	INTRON CG6966	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3L	601698	3L_601698_SNP [dm3] 3L_601698_SNP [dm6]	G	A	3.618e^-4	0.986	INTRON CG13893	TF binding site mE1_TFBS_sens
2L	6295542	2L_6295542_SNP [dm3] 2L_6295542_SNP [dm6]	G	T	3.622e^-4	0.986	INTRON Ddr
3L	8218691	3L_8218691_SNP [dm3] 3L_8225591_SNP [dm6]	T	C	3.622e^-4	0.986	INTERGENIC
2R	1044428	2R_1044428_SNP [dm3] 2R_5156923_SNP [dm6]	A	T	3.625e^-4	0.986	INTERGENIC	transposable element FlyBase
3R	27155376	3R_27155376_SNP [dm3] 3R_31329654_SNP [dm6]	T	A	3.630e^-4	0.986	INTRON CG34347	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10142017	X_10142017_SNP [dm3] X_10247984_SNP [dm6]	G	A	3.640e^-4	0.986	INTRON Hk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12541817	2R_12541817_SNP [dm3] 2R_16654312_SNP [dm6]	T	G	3.645e^-4	0.986	NON_SYNONYMOUS_CODING Nach INTRON Nach
3L	3120840	3L_3120840_SNP [dm3] 3L_3120840_SNP [dm6]	C	A	3.645e^-4	0.986	SYNONYMOUS_CODING prominin-like
3L	10536982	3L_10536982_SNP [dm3] 3L_10543882_SNP [dm6]	A	T	3.653e^-4	0.986	INTRON A2bp1
3L	6292049	3L_6292049_SNP [dm3] 3L_6298949_SNP [dm6]	T	A	3.661e^-4	0.986	INTERGENIC
X	2403115	X_2403115_SNP [dm3] X_2509082_SNP [dm6]	A	T	3.661e^-4	0.986	INTRON trol
3L	3277677	3L_3277677_SNP [dm3] 3L_3277677_SNP [dm6]	C	T	3.664e^-4	0.986	INTERGENIC
2L	1671094	2L_1671094_SNP [dm3] 2L_1671094_SNP [dm6]	A	G	3.667e^-4	0.986	INTRON chinmo
2R	8512879	2R_8512879_SNP [dm3] 2R_12625374_SNP [dm6]	T	C	3.673e^-4	0.986	UPSTREAM CG17760 DOWNSTREAM CG30054 INTERGENIC
3R	23495261	3R_23495261_SNP [dm3] 3R_27669539_SNP [dm6]	T	C	3.674e^-4	0.986	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10896788	3L_10896788_SNP [dm3] 3L_10903688_SNP [dm6]	A	C	3.677e^-4	0.986	INTERGENIC
2L	10524664	2L_10524664_SNP [dm3] 2L_10524664_SNP [dm6]	T	A	3.686e^-4	0.986	INTERGENIC
2R	14616591	2R_14616591_SNP [dm3] 2R_18729086_SNP [dm6]	G	A	3.687e^-4	0.986	INTRON Hs3st-A & 1 other
2L	6515958	2L_6515958_SNP [dm3] 2L_6515958_SNP [dm6]	G	A	3.689e^-4	0.986	INTRON CG31637
X	11161891	X_11161891_SNP [dm3] X_11267858_SNP [dm6]	A	C	3.696e^-4	0.986	INTRON CG44422
3R	25208069	3R_25208069_SNP [dm3] 3R_29382347_SNP [dm6]	C	G	3.706e^-4	0.986	INTRON Ptp99A
2L	1303143	2L_1303143_SNP [dm3] 2L_1303143_SNP [dm6]	T	A	3.708e^-4	0.986	INTERGENIC
2L	14071525	2L_14071525_SNP [dm3] 2L_14071525_SNP [dm6]	T	C	3.716e^-4	0.986	INTRON nAChRalpha5	TF binding site mE1_TFBS_HSA
X	16153987	X_16153987_SNP [dm3] X_16259954_SNP [dm6]	T	A	3.720e^-4	0.986	INTERGENIC
2L	10097057	2L_10097057_SNP [dm3] 2L_10097057_SNP [dm6]	C	T	3.722e^-4	0.986	SPLICE_SITE_REGION CG44153 INTRON CG34109 & 1 other
3R	11871480	3R_11871480_SNP [dm3] 3R_16045758_SNP [dm6]	T	C	3.725e^-4	0.986	DOWNSTREAM CG10264 & 1 other INTRON CG10407
3R	15850833	3R_15850833_SNP [dm3] 3R_20025111_SNP [dm6]	T	C	3.730e^-4	0.986	SYNONYMOUS_CODING psidin	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16549113	2R_16549113_SNP [dm3] 2R_20661608_SNP [dm6]	G	T	3.730e^-4	0.986	UTR_5_PRIME CG13437 DOWNSTREAM Lrt & 1 other	TF binding site mE1_TFBS_cad
3R	22472635	3R_22472635_SNP [dm3] 3R_26646913_SNP [dm6]	G	A	3.731e^-4	0.986	UTR_3_PRIME beat-VII
2L	6289433	2L_6289433_SNP [dm3] 2L_6289433_SNP [dm6]	G	C	3.732e^-4	0.986	INTRON Ddr
3L	10849166	3L_10849166_SNP [dm3] 3L_10856066_SNP [dm6]	G	A	3.733e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	6705056	2R_6705056_SNP [dm3] 2R_10817551_SNP [dm6]	C	A	3.734e^-4	0.986	NON_SYNONYMOUS_CODING dgo	TF binding site mE1_TFBS_sens
3R	4209776	3R_4209776_SNP [dm3] 3R_8384054_SNP [dm6]	G	A	3.739e^-4	0.986	UTR_3_PRIME CG45263 INTRON CG45263
2L	9707816	2L_9707816_SNP [dm3] 2L_9707816_SNP [dm6]	C	T	3.764e^-4	0.986	INTRON pelo
3L	9962113	3L_9962113_SNP [dm3] 3L_9969013_SNP [dm6]	C	T	3.765e^-4	0.986	SYNONYMOUS_CODING Nc UPSTREAM CG6685	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	14923949	3R_14923949_INS [dm3] 3R_19098227_INS [dm6]	C	CC	3.766e^-4	0.986	INTRON CG6040
2R	17171812	2R_17171812_DEL [dm3] 2R_21284307_DEL [dm6]	TT	T	3.767e^-4	0.986	DOWNSTREAM CG10505 INTRON MFS16	TF binding site mE1_TFBS_cad
2L	1633608	2L_1633608_SNP [dm3] 2L_1633608_SNP [dm6]	A	C	3.773e^-4	0.986	INTERGENIC
2L	9588646	2L_9588646_SNP [dm3] 2L_9588646_SNP [dm6]	C	T	3.776e^-4	0.986	UPSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	16319179	2R_16319179_SNP [dm3] 2R_20431674_SNP [dm6]	G	C	3.780e^-4	0.986	INTRON CG12484
3L	9113481	3L_9113481_SNP [dm3] 3L_9120381_SNP [dm6]	A	T	3.781e^-4	0.986	INTRON bol
3L	9113482	3L_9113482_SNP [dm3] 3L_9120382_SNP [dm6]	A	T	3.781e^-4	0.986	INTRON bol
3L	1133426	3L_1133426_SNP [dm3] 3L_1133426_SNP [dm6]	C	G	3.792e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
X	2548058	X_2548058_SNP [dm3] X_2654025_SNP [dm6]	C	T	3.794e^-4	0.986	INTRON sgg
3R	10135587	3R_10135587_SNP [dm3] 3R_14309865_SNP [dm6]	C	A	3.795e^-4	0.986	UTR_3_PRIME RpII15 UPSTREAM CG31321 DOWNSTREAM RpII15
3R	7915937	3R_7915937_SNP [dm3] 3R_12090215_SNP [dm6]	A	G	3.800e^-4	0.986	INTRON CG14741	TF binding site mE1_TFBS_Trl
3R	14019220	3R_14019220_SNP [dm3] 3R_18193498_SNP [dm6]	A	G	3.801e^-4	0.986	UTR_3_PRIME Ssdp
X	17655518	X_17655518_SNP [dm3] X_17761485_SNP [dm6]	G	T	3.806e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3797132	3L_3797132_SNP [dm3] 3L_3797132_SNP [dm6]	A	T	3.808e^-4	0.986	INTRON CG32264
3R	8372640	3R_8372640_SNP [dm3] 3R_12546918_SNP [dm6]	G	C	3.813e^-4	0.986	INTRON Octbeta3R
3L	12015765	3L_12015765_SNP [dm3] 3L_12022665_SNP [dm6]	G	A	3.815e^-4	0.986	INTRON rols
3R	26605638	3R_26605638_SNP [dm3] 3R_30779916_SNP [dm6]	A	T	3.816e^-4	0.986	INTRON zfh1	TF binding site BDTNP1_TFBS_dl
3L	4274549	3L_4274549_SNP [dm3] 3L_4274549_SNP [dm6]	G	A	3.826e^-4	0.986	SYNONYMOUS_CODING CG1273
2L	2848235	2L_2848235_SNP [dm3] 2L_2848235_SNP [dm6]	C	G	3.826e^-4	0.986	NON_SYNONYMOUS_CODING CG2983 DOWNSTREAM CG3104
2L	9228831	2L_9228831_SNP [dm3] 2L_9228831_SNP [dm6]	A	T	3.828e^-4	0.986	INTRON tai
3R	11864434	3R_11864434_SNP [dm3] 3R_16038712_SNP [dm6]	C	T	3.834e^-4	0.986	SYNONYMOUS_CODING pnr UTR_5_PRIME pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	1132555	3L_1132555_SNP [dm3] 3L_1132555_SNP [dm6]	C	T	3.843e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs
3R	9740666	3R_9740666_SNP [dm3] 3R_13914944_SNP [dm6]	T	G	3.854e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	24040344	3R_24040344_SNP [dm3] 3R_28214622_SNP [dm6]	A	G	3.862e^-4	0.986	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	1081636	2L_1081636_SNP [dm3] 2L_1081636_SNP [dm6]	A	G	3.879e^-4	0.986	SYNONYMOUS_CODING Atg4a DOWNSTREAM ast
3R	24061313	3R_24061313_SNP [dm3] 3R_28235591_SNP [dm6]	T	C	3.886e^-4	0.986	INTRON CG34354
3L	3884939	3L_3884939_SNP [dm3] 3L_3884939_SNP [dm6]	G	T	3.889e^-4	0.986	UPSTREAM CR43917 INTERGENIC
3L	12467056	3L_12467056_SNP [dm3] 3L_12473956_SNP [dm6]	T	G	3.897e^-4	0.986	NON_SYNONYMOUS_CODING CG10616 DOWNSTREAM CG10663	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10442202	2L_10442202_SNP [dm3] 2L_10442202_SNP [dm6]	G	T	3.902e^-4	0.986	UPSTREAM loh EXON CR45375
2R	13772678	2R_13772678_SNP [dm3] 2R_17885173_SNP [dm6]	A	T	3.904e^-4	0.986	INTRON Elk
2L	6501719	2L_6501719_SNP [dm3] 2L_6501719_SNP [dm6]	C	A	3.906e^-4	0.986	INTRON CG31637	TF binding site mE1_TFBS_sens
3L	11949216	3L_11949216_SNP [dm3] 3L_11956116_SNP [dm6]	G	A	3.909e^-4	0.986	SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
3L	12015442	3L_12015442_SNP [dm3] 3L_12022342_SNP [dm6]	G	A	3.923e^-4	0.986	INTRON rols
X	2430418	X_2430418_SNP [dm3] X_2536385_SNP [dm6]	T	C	3.925e^-4	0.986	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	18924255	3L_18924255_SNP [dm3] 3L_18931155_SNP [dm6]	T	A	3.926e^-4	0.986	INTRON CG32204
X	13648168	X_13648168_DEL [dm3] X_13754135_DEL [dm6]	AAATTGAAA	A	3.927e^-4	0.986	INTRON Pdcd4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	15163449	3L_15163449_SNP [dm3] 3L_15170349_SNP [dm6]	T	G	3.934e^-4	0.986	INTERGENIC
2L	3617950	2L_3617950_SNP [dm3] 2L_3617950_SNP [dm6]	G	T	3.934e^-4	0.986	DOWNSTREAM CR44310 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	5623957	2L_5623957_SNP [dm3] 2L_5623957_SNP [dm6]	A	G	3.936e^-4	0.986	UPSTREAM Cyp6a16 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	6507363	2L_6507363_SNP [dm3] 2L_6507363_SNP [dm6]	T	C	3.945e^-4	0.986	DOWNSTREAM CR44775 INTRON CG31637
3L	19079465	3L_19079465_DEL [dm3] 3L_19086365_DEL [dm6]	TT	T	3.946e^-4	0.986	UTR_5_PRIME Mkp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	10211113	3L_10211113_SNP [dm3] 3L_10218013_SNP [dm6]	A	T	3.950e^-4	0.986	DOWNSTREAM CG32055 INTERGENIC
2R	2371363	2R_2371363_SNP [dm3] 2R_6483858_SNP [dm6]	T	C	3.952e^-4	0.986	INTERGENIC	transposable element FlyBase
X	8068393	X_8068393_SNP [dm3] X_8174360_SNP [dm6]	T	C	3.954e^-4	0.986	INTRON slpr
3L	3330860	3L_3330860_SNP [dm3] 3L_3330860_SNP [dm6]	A	G	3.962e^-4	0.986	SYNONYMOUS_CODING CG14961	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	4914885	X_4914885_SNP [dm3] X_5020852_SNP [dm6]	T	G	3.991e^-4	0.986	INTRON CR44833	regulatory region REDfly_CRMs
3R	5883246	3R_5883246_SNP [dm3] 3R_10057524_SNP [dm6]	A	G	3.996e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13226529	2L_13226529_SNP [dm3] 2L_13226529_SNP [dm6]	T	C	3.997e^-4	0.986	UPSTREAM CG16813 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14147599	2R_14147599_SNP [dm3] 2R_18260094_SNP [dm6]	G	A	3.997e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9122425	2L_9122425_SNP [dm3] 2L_9122425_SNP [dm6]	T	A	3.998e^-4	0.986	UPSTREAM CR44616 INTERGENIC
3R	13922832	3R_13922832_SNP [dm3] 3R_18097110_SNP [dm6]	A	C	4.005e^-4	0.986	INTRON sr
2R	9243978	2R_9243978_SNP [dm3] 2R_13356473_SNP [dm6]	T	C	4.008e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	8238359	X_8238359_SNP [dm3] X_8344326_SNP [dm6]	G	C	4.011e^-4	0.986	INTRON nAChRalpha3
3L	7283709	3L_7283709_SNP [dm3] 3L_7290609_SNP [dm6]	T	C	4.015e^-4	0.986	INTRON unc-13-4A
3L	5902388	3L_5902388_SNP [dm3] 3L_5909288_SNP [dm6]	A	G	4.017e^-4	0.986	NON_SYNONYMOUS_CODING CG13288
3R	7542938	3R_7542938_SNP [dm3] 3R_11717216_SNP [dm6]	T	A	4.021e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6675364	3R_6675364_SNP [dm3] 3R_10849642_SNP [dm6]	C	G	4.023e^-4	0.986	UPSTREAM CG42394 DOWNSTREAM Cad86C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	1134139	3L_1134139_SNP [dm3] 3L_1134139_SNP [dm6]	T	G	4.025e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs
3L	2981531	3L_2981531_SNP [dm3] 3L_2981531_SNP [dm6]	G	A	4.026e^-4	0.986	NON_SYNONYMOUS_CODING CG2107	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	23500205	3L_23500205_SNP [dm3] 3L_23507105_SNP [dm6]	G	C	4.049e^-4	0.986	INTERGENIC	transposable element FlyBase
2L	4565499	2L_4565499_SNP [dm3] 2L_4565499_SNP [dm6]	G	C	4.052e^-4	0.986	INTRON dp
2L	8329131	2L_8329131_SNP [dm3] 2L_8329131_SNP [dm6]	A	G	4.064e^-4	0.986	START_GAINED CG14275 UTR_5_PRIME CG14275 INTRON CG14275	TF binding site mE1_TFBS_Trl
X	14551384	X_14551384_SNP [dm3] X_14657351_SNP [dm6]	G	A	4.065e^-4	0.986	INTERGENIC
3R	7553864	3R_7553864_SNP [dm3] 3R_11728142_SNP [dm6]	G	T	4.067e^-4	0.986	INTRON CG12594	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20238975	2R_20238975_SNP [dm3] 2R_24351452_SNP [dm6]	A	G	4.068e^-4	0.986	UPSTREAM CG44812 DOWNSTREAM CR44811 INTRON bs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19133296	3R_19133296_SNP [dm3] 3R_23307574_SNP [dm6]	C	T	4.076e^-4	0.986	INTRON pnt
3L	4029914	3L_4029914_SNP [dm3] 3L_4029914_SNP [dm6]	T	C	4.076e^-4	0.986	SYNONYMOUS_CODING Gr64b START_GAINED Gr64c UTR_5_PRIME Gr64c UPSTREAM Gr64c
3R	12246195	3R_12246195_SNP [dm3] 3R_16420473_SNP [dm6]	C	G	4.079e^-4	0.986	INTERGENIC
3L	15233101	3L_15233101_SNP [dm3] 3L_15240001_SNP [dm6]	A	C	4.088e^-4	0.986	NON_SYNONYMOUS_CODING Tollo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5848806	2L_5848806_SNP [dm3] 2L_5848806_SNP [dm6]	G	T	4.089e^-4	0.986	INTRON TrissinR
3R	20924653	3R_20924653_SNP [dm3] 3R_25098931_SNP [dm6]	C	T	4.093e^-4	0.986	INTRON CG33095 & 1 other	TF binding site mE1_TFBS_HSA
2L	6462971	2L_6462971_SNP [dm3] 2L_6462971_SNP [dm6]	T	A	4.093e^-4	0.986	INTRON CG16947	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7724256	2R_7724256_SNP [dm3] 2R_11836751_SNP [dm6]	C	T	4.099e^-4	0.986	INTRON Sobp
X	16159162	X_16159162_SNP [dm3] X_16265129_SNP [dm6]	G	T	4.111e^-4	0.986	DOWNSTREAM CG12507 INTERGENIC
3R	8802470	3R_8802470_SNP [dm3] 3R_12976748_SNP [dm6]	T	A	4.131e^-4	0.986	INTRON CG7381
2R	18880017	2R_18880017_SNP [dm3] 2R_22992494_SNP [dm6]	G	C	4.137e^-4	0.986	INTRON twi
2R	13585642	2R_13585642_SNP [dm3] 2R_17698137_SNP [dm6]	T	C	4.137e^-4	0.986	SPLICE_SITE_REGION rdgBbeta UPSTREAM Uhg1 INTRON CR45146 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	10027063	2L_10027063_SNP [dm3] 2L_10027063_SNP [dm6]	A	G	4.141e^-4	0.986	NON_SYNONYMOUS_CODING CG13127
2L	8011717	2L_8011717_SNP [dm3] 2L_8011717_SNP [dm6]	T	C	4.144e^-4	0.986	UTR_5_PRIME Tg
3R	10873048	3R_10873048_SNP [dm3] 3R_15047326_SNP [dm6]	C	T	4.150e^-4	0.986	INTERGENIC
3R	10873050	3R_10873050_DEL [dm3] 3R_15047328_DEL [dm6]	TA	T	4.150e^-4	0.986	INTERGENIC
2R	16909729	2R_16909729_SNP [dm3] 2R_21022224_SNP [dm6]	C	A	4.168e^-4	0.986	INTRON RIC-3
X	18417704	X_18417704_SNP [dm3] X_18523671_SNP [dm6]	A	G	4.183e^-4	0.986	INTRON Bx	TF binding site BDTNP1_TFBS_dl
3L	19008158	3L_19008158_SNP [dm3] 3L_19015058_SNP [dm6]	A	C	4.187e^-4	0.986	INTRON nkd
2R	17166334	2R_17166334_SNP [dm3] 2R_21278829_SNP [dm6]	T	C	4.192e^-4	0.986	SPLICE_SITE_REGION Rgk3 INTRON Rgk3
X	8347939	X_8347939_SNP [dm3] X_8453906_SNP [dm6]	G	A	4.196e^-4	0.986	INTRON org-1
2L	3172342	2L_3172342_SNP [dm3] 2L_3172342_SNP [dm6]	G	C	4.216e^-4	0.986	DOWNSTREAM tRNA:S7:23Ea & 1 other EXON CR44003	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	12629639	2R_12629639_SNP [dm3] 2R_16742134_SNP [dm6]	T	C	4.242e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21033050	3R_21033050_SNP [dm3] 3R_25207328_SNP [dm6]	T	C	4.245e^-4	0.986	INTRON CG13654 & 1 other
2L	9233980	2L_9233980_SNP [dm3] 2L_9233980_SNP [dm6]	A	C	4.246e^-4	0.986	SPLICE_SITE_REGION tai INTRON tai	TF binding site mE1_TFBS_cad
2R	19252234	2R_19252234_SNP [dm3] 2R_23364711_SNP [dm6]	T	G	4.248e^-4	0.986	SYNONYMOUS_CODING vir	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7611667	2L_7611667_SNP [dm3] 2L_7611667_SNP [dm6]	G	A	4.251e^-4	0.986	INTRON CG6739	TF binding site BDTNP1_TFBS_twi
X	8716998	X_8716998_SNP [dm3] X_8822965_SNP [dm6]	T	G	4.273e^-4	0.986	INTERGENIC
3L	1133522	3L_1133522_SNP [dm3] 3L_1133522_SNP [dm6]	G	A	4.280e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3L	1133527	3L_1133527_SNP [dm3] 3L_1133527_SNP [dm6]	C	G	4.280e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3L	2977367	3L_2977367_SNP [dm3] 3L_2977367_SNP [dm6]	G	T	4.280e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_cad
3R	21500484	3R_21500484_SNP [dm3] 3R_25674762_SNP [dm6]	C	A	4.283e^-4	0.986	INTRON Lgr3
3R	2386776	3R_2386776_INS [dm3] 3R_6561054_INS [dm6]	C	CTTTTTC	4.287e^-4	0.986	UPSTREAM CG1137 INTRON dpr11
2L	5228682	2L_5228682_SNP [dm3] 2L_5228682_SNP [dm6]	G	A	4.288e^-4	0.986	INTRON tkv
2L	15251889	2L_15251889_SNP [dm3] 2L_15251889_SNP [dm6]	T	C	4.290e^-4	0.986	SYNONYMOUS_CODING dao	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2540470	3L_2540470_SNP [dm3] 3L_2540470_SNP [dm6]	A	C	4.292e^-4	0.986	INTRON Spn
X	16880534	X_16880534_SNP [dm3] X_16986501_SNP [dm6]	A	G	4.292e^-4	0.986	INTRON CG45002
X	13299128	X_13299128_SNP [dm3] X_13405095_SNP [dm6]	C	T	4.297e^-4	0.986	INTRON GstT4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3674447	2L_3674447_SNP [dm3] 2L_3674447_SNP [dm6]	G	T	4.304e^-4	0.986	INTRON CG34340
3R	20278380	3R_20278380_SNP [dm3] 3R_24452658_SNP [dm6]	G	A	4.304e^-4	0.986	INTRON nAChRalpha1
3R	17327966	3R_17327966_SNP [dm3] 3R_21502244_SNP [dm6]	T	C	4.305e^-4	0.986	INTRON C15	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	8622548	3L_8622548_SNP [dm3] 3L_8629448_SNP [dm6]	A	G	4.311e^-4	0.986	UPSTREAM Zasp66 INTRON Zasp66	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7542945	3R_7542945_SNP [dm3] 3R_11717223_SNP [dm6]	A	T	4.319e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14985992	2R_14985992_SNP [dm3] 2R_19098487_SNP [dm6]	G	C	4.324e^-4	0.986	INTRON 5-HT1A
3R	5883260	3R_5883260_SNP [dm3] 3R_10057538_SNP [dm6]	G	A	4.335e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12230575	3L_12230575_SNP [dm3] 3L_12237475_SNP [dm6]	G	A	4.339e^-4	0.986	INTRON app
X	13876284	X_13876284_SNP [dm3] X_13982251_SNP [dm6]	T	C	4.352e^-4	0.986	INTRON mamo
2L	16198274	2L_16198274_SNP [dm3] 2L_16198274_SNP [dm6]	C	T	4.355e^-4	0.986	INTERGENIC
3R	8808149	3R_8808149_INS [dm3] 3R_12982427_INS [dm6]	A	ACA	4.357e^-4	0.986	INTRON Paip2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	4526637	2L_4526637_SNP [dm3] 2L_4526637_SNP [dm6]	C	T	4.363e^-4	0.986	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10327938	3R_10327938_SNP [dm3] 3R_14502216_SNP [dm6]	G	A	4.376e^-4	0.986	INTRON CR44177
3R	8790315	3R_8790315_SNP [dm3] 3R_12964593_SNP [dm6]	T	C	4.394e^-4	0.986	SYNONYMOUS_CODING Cyp304a1 INTRON grsm	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14573184	2L_14573184_SNP [dm3] 2L_14573184_SNP [dm6]	T	C	4.405e^-4	0.986	INTERGENIC
2L	3434946	2L_3434946_SNP [dm3] 2L_3434946_SNP [dm6]	C	T	4.407e^-4	0.986	INTERGENIC
3R	17335701	3R_17335701_SNP [dm3] 3R_21509979_SNP [dm6]	G	A	4.412e^-4	0.986	INTRON C15	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16784556	X_16784556_SNP [dm3] X_16890523_SNP [dm6]	A	G	4.421e^-4	0.986	SYNONYMOUS_CODING CG13002 UPSTREAM CR43768
3R	25220550	3R_25220550_SNP [dm3] 3R_29394828_SNP [dm6]	A	T	4.423e^-4	0.986	INTRON Ptp99A
3R	7193569	3R_7193569_SNP [dm3] 3R_11367847_SNP [dm6]	T	C	4.429e^-4	0.986	INTRON pros	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1332189	2L_1332189_DEL [dm3] 2L_1332189_DEL [dm6]	TG	T	4.438e^-4	0.986	INTERGENIC
3L	14920986	3L_14920986_SNP [dm3] 3L_14927886_SNP [dm6]	C	T	4.440e^-4	0.986	INTRON DCX-EMAP
2L	3523947	2L_3523947_SNP [dm3] 2L_3523947_SNP [dm6]	C	A	4.441e^-4	0.986	NON_SYNONYMOUS_CODING Sr-CIV
2L	7167967	2L_7167967_SNP [dm3] 2L_7167967_SNP [dm6]	A	C	4.444e^-4	0.986	INTERGENIC
2R	2371999	2R_2371999_SNP [dm3] 2R_6484494_SNP [dm6]	T	A	4.448e^-4	0.986	INTERGENIC	transposable element FlyBase
2L	13982617	2L_13982617_SNP [dm3] 2L_13982617_SNP [dm6]	T	C	4.451e^-4	0.986	SYNONYMOUS_CODING NimC2 DOWNSTREAM rk	TF binding site mE1_TFBS_cad
3R	15176947	3R_15176947_SNP [dm3] 3R_19351225_SNP [dm6]	A	G	4.455e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21459733	3R_21459733_SNP [dm3] 3R_25634011_SNP [dm6]	T	A	4.461e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
X	14551366	X_14551366_SNP [dm3] X_14657333_SNP [dm6]	G	T	4.462e^-4	0.986	INTERGENIC
2R	7832713	2R_7832713_SNP [dm3] 2R_11945208_SNP [dm6]	C	T	4.465e^-4	0.986	INTRON CG13188
2R	817253	2R_817253_SNP [dm3] 2R_4929748_SNP [dm6]	T	C	4.467e^-4	0.986	INTRON Ir41a
3R	23998629	3R_23998629_SNP [dm3] 3R_28172907_SNP [dm6]	A	T	4.467e^-4	0.986	INTRON CG34354
2L	10524776	2L_10524776_DEL [dm3] 2L_10524776_DEL [dm6]	AGTGC	A	4.483e^-4	0.986	INTERGENIC
2L	6497510	2L_6497510_SNP [dm3] 2L_6497510_SNP [dm6]	A	T	4.485e^-4	0.986	NON_SYNONYMOUS_CODING CG9550 DOWNSTREAM CG31638
2L	6506802	2L_6506802_SNP [dm3] 2L_6506802_SNP [dm6]	G	T	4.490e^-4	0.986	DOWNSTREAM CR44775 INTRON CG31637
2R	16558663	2R_16558663_SNP [dm3] 2R_20671158_SNP [dm6]	C	T	4.493e^-4	0.986	UTR_5_PRIME CG30152 UPSTREAM CG30152 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	10440004	X_10440004_INS [dm3] X_10545971_INS [dm6]	T	TCTT	4.493e^-4	0.986	INTRON spri	TF binding site BDTNP1_TFBS_dl
3L	10846155	3L_10846155_SNP [dm3] 3L_10853055_SNP [dm6]	C	A	4.507e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17515786	2R_17515786_SNP [dm3] 2R_21628281_SNP [dm6]	C	T	4.508e^-4	0.986	SYNONYMOUS_CODING mahj	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14621912	X_14621912_DEL [dm3] X_14727879_DEL [dm6]	TAT	T	4.520e^-4	0.986	INTRON NetB
2L	6515359	2L_6515359_SNP [dm3] 2L_6515359_SNP [dm6]	A	G	4.521e^-4	0.986	INTRON CG31637
2R	17907337	2R_17907337_SNP [dm3] 2R_22019832_SNP [dm6]	G	T	4.524e^-4	0.986	INTRON CG34370
2L	2853643	2L_2853643_DEL [dm3] 2L_2853643_DEL [dm6]	GG	G	4.537e^-4	0.986	INTRON CG3104
3R	26416785	3R_26416785_SNP [dm3] 3R_30591063_SNP [dm6]	T	G	4.540e^-4	0.986	INTERGENIC
2L	5334568	2L_5334568_SNP [dm3] 2L_5334568_SNP [dm6]	A	G	4.545e^-4	0.986	INTRON fusl
3L	2434969	3L_2434969_SNP [dm3] 3L_2434969_SNP [dm6]	G	A	4.569e^-4	0.986	SYNONYMOUS_CODING CG45186 UTR_5_PRIME CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4808704	2L_4808704_SNP [dm3] 2L_4808704_SNP [dm6]	T	A	4.569e^-4	0.986	INTERGENIC
3R	3955840	3R_3955840_SNP [dm3] 3R_8130118_SNP [dm6]	C	T	4.576e^-4	0.986	DOWNSTREAM Gie INTERGENIC
3L	4402083	3L_4402083_SNP [dm3] 3L_4402083_SNP [dm6]	C	A	4.596e^-4	0.986	SYNONYMOUS_CODING slow	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	11869272	3R_11869272_SNP [dm3] 3R_16043550_SNP [dm6]	A	T	4.596e^-4	0.986	UTR_5_PRIME CG10264
2L	9682246	2L_9682246_SNP [dm3] 2L_9682246_SNP [dm6]	C	T	4.608e^-4	0.986	DOWNSTREAM Pka-C1 INTERGENIC
3R	8802634	3R_8802634_SNP [dm3] 3R_12976912_SNP [dm6]	A	G	4.616e^-4	0.986	INTRON CG7381
3L	2980904	3L_2980904_SNP [dm3] 3L_2980904_SNP [dm6]	A	G	4.622e^-4	0.986	UPSTREAM CG2107 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9582870	2L_9582870_SNP [dm3] 2L_9582870_SNP [dm6]	C	G	4.623e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	1759415	3L_1759415_SNP [dm3] 3L_1759415_SNP [dm6]	G	A	4.635e^-4	0.986	SYNONYMOUS_CODING Dhc62B DOWNSTREAM CG8001	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24103242	3R_24103242_INS [dm3] 3R_28277520_INS [dm6]	A	AA	4.636e^-4	0.986	INTERGENIC
2L	10839507	2L_10839507_SNP [dm3] 2L_10839507_SNP [dm6]	A	C	4.642e^-4	0.986	DOWNSTREAM mir-4987 INTRON CG6700	TF binding site BDTNP1_TFBS_dl
2L	2552108	2L_2552108_SNP [dm3] 2L_2552108_SNP [dm6]	A	C	4.648e^-4	0.986	SYNONYMOUS_CODING CG3515	TF binding site BDTNP1_TFBS_sna
3L	16167556	3L_16167556_SNP [dm3] 3L_16174456_SNP [dm6]	A	G	4.655e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	4958861	3R_4958861_SNP [dm3] 3R_9133139_SNP [dm6]	T	A	4.656e^-4	0.986	INTRON pum
2L	861393	2L_861393_SNP [dm3] 2L_861393_SNP [dm6]	C	A	4.656e^-4	0.986	DOWNSTREAM aru INTRON CG13950	TF binding site mE1_TFBS_chinmo
X	6116165	X_6116165_SNP [dm3] X_6222132_SNP [dm6]	T	C	4.664e^-4	0.986	SYNONYMOUS_CODING Efr DOWNSTREAM sqh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2552400	2L_2552400_SNP [dm3] 2L_2552400_SNP [dm6]	A	G	4.665e^-4	0.986	INTRON CG3515
2R	15435917	2R_15435917_SNP [dm3] 2R_19548412_SNP [dm6]	C	T	4.666e^-4	0.986	INTRON sm
2L	6463090	2L_6463090_SNP [dm3] 2L_6463090_SNP [dm6]	G	T	4.667e^-4	0.986	INTRON CG16947	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14492394	3L_14492394_SNP [dm3] 3L_14499294_SNP [dm6]	G	A	4.669e^-4	0.986	INTRON bbg	TF binding site mE1_TFBS_inv
2L	6511556	2L_6511556_SNP [dm3] 2L_6511556_SNP [dm6]	T	C	4.670e^-4	0.986	INTRON CG31637
2R	17466443	2R_17466443_SNP [dm3] 2R_21578938_SNP [dm6]	A	T	4.683e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19088192	3R_19088192_SNP [dm3] 3R_23262470_SNP [dm6]	C	T	4.687e^-4	0.986	UTR_3_PRIME orb
X	16514643	X_16514643_SNP [dm3] X_16620610_SNP [dm6]	T	G	4.712e^-4	0.986	INTRON CG9782	TF binding site BDTNP1_TFBS_twi
3R	16656237	3R_16656237_SNP [dm3] 3R_20830515_SNP [dm6]	A	G	4.713e^-4	0.986	UTR_5_PRIME AdSS UPSTREAM CG31223	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	7406550	3R_7406550_SNP [dm3] 3R_11580828_SNP [dm6]	G	A	4.717e^-4	0.986	NON_SYNONYMOUS_CODING CG5342 UPSTREAM wkd	TF binding site mE1_TFBS_sens
3L	6697582	3L_6697582_SNP [dm3] 3L_6704482_SNP [dm6]	C	A	4.721e^-4	0.986	UPSTREAM SP1173 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2977748	3L_2977748_SNP [dm3] 3L_2977748_SNP [dm6]	T	C	4.725e^-4	0.986	INTERGENIC
3R	26605660	3R_26605660_SNP [dm3] 3R_30779938_SNP [dm6]	A	C	4.725e^-4	0.986	INTRON zfh1	TF binding site BDTNP1_TFBS_dl
2R	9241977	2R_9241977_SNP [dm3] 2R_13354472_SNP [dm6]	T	A	4.726e^-4	0.986	UTR_5_PRIME CG17048 EXON CR44206
X	4687951	X_4687951_SNP [dm3] X_4793918_SNP [dm6]	C	A	4.750e^-4	0.986	INTERGENIC
3R	24007696	3R_24007696_SNP [dm3] 3R_28181974_SNP [dm6]	C	G	4.761e^-4	0.986	INTRON CG34354
2L	6461108	2L_6461108_SNP [dm3] 2L_6461108_SNP [dm6]	T	C	4.763e^-4	0.986	INTRON CG16947
2L	11389763	2L_11389763_SNP [dm3] 2L_11389763_SNP [dm6]	T	A	4.771e^-4	0.986	DOWNSTREAM CR43681 EXON CR43681	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	4317305	2L_4317305_SNP [dm3] 2L_4317305_SNP [dm6]	C	A	4.772e^-4	0.986	INTRON tutl	TF binding site mE1_TFBS_HSA
2R	19535582	2R_19535582_SNP [dm3] 2R_23648059_SNP [dm6]	G	A	4.773e^-4	0.986	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20582041	2R_20582041_SNP [dm3] 2R_24694518_SNP [dm6]	T	C	4.774e^-4	0.986	UPSTREAM ST6Gal DOWNSTREAM Mid1 INTERGENIC
2R	5086054	2R_5086054_DEL [dm3] 2R_9198549_DEL [dm6]	GG	G	4.782e^-4	0.986	INTRON unpg
3R	5148164	3R_5148164_SNP [dm3] 3R_9322442_SNP [dm6]	T	A	4.782e^-4	0.986	DOWNSTREAM HP1e INTRON CG8861
3R	25061620	3R_25061620_SNP [dm3] 3R_29235898_SNP [dm6]	G	A	4.793e^-4	0.986	SYNONYMOUS_CODING CG11951 UTR_3_PRIME CG11951 DOWNSTREAM CG15817	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11045191	3L_11045191_SNP [dm3] 3L_11052091_SNP [dm6]	C	A	4.801e^-4	0.986	UPSTREAM CG43693 INTERGENIC
2L	6462293	2L_6462293_SNP [dm3] 2L_6462293_SNP [dm6]	A	C	4.804e^-4	0.986	INTRON CG16947
3R	7193550	3R_7193550_SNP [dm3] 3R_11367828_SNP [dm6]	T	C	4.805e^-4	0.986	INTRON pros	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11734149	3L_11734149_DEL [dm3] 3L_11741049_DEL [dm6]	GAAG	G	4.809e^-4	0.986	INTRON CG6024
2R	10992667	2R_10992667_SNP [dm3] 2R_15105162_SNP [dm6]	A	G	4.817e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6327560	2L_6327560_SNP [dm3] 2L_6327560_SNP [dm6]	T	C	4.821e^-4	0.986	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2541650	3L_2541650_SNP [dm3] 3L_2541650_SNP [dm6]	A	T	4.823e^-4	0.986	INTRON Spn
3L	9514659	3L_9514659_SNP [dm3] 3L_9521559_SNP [dm6]	T	C	4.826e^-4	0.986	INTRON CG33700
2L	7140901	2L_7140901_SNP [dm3] 2L_7140901_SNP [dm6]	T	C	4.831e^-4	0.986	INTRON Pvf3
3L	5873397	3L_5873397_SNP [dm3] 3L_5880297_SNP [dm6]	T	A	4.861e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21456091	3R_21456091_SNP [dm3] 3R_25630369_SNP [dm6]	G	A	4.881e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	1135568	3L_1135568_SNP [dm3] 3L_1135568_SNP [dm6]	A	T	4.881e^-4	0.986	INTERGENIC
2R	9256142	2R_9256142_SNP [dm3] 2R_13368637_SNP [dm6]	C	G	4.888e^-4	0.986	INTERGENIC
2L	4280197	2L_4280197_SNP [dm3] 2L_4280197_SNP [dm6]	A	T	4.895e^-4	0.986	UPSTREAM Art2 INTRON Art2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	10018197	2R_10018197_SNP [dm3] 2R_14130692_SNP [dm6]	A	T	4.898e^-4	0.986	INTRON Prosap
2L	9231325	2L_9231325_SNP [dm3] 2L_9231325_SNP [dm6]	A	G	4.910e^-4	0.986	INTRON tai
2R	12629611	2R_12629611_SNP [dm3] 2R_16742106_SNP [dm6]	C	G	4.910e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12710851	2R_12710851_SNP [dm3] 2R_16823346_SNP [dm6]	G	A	4.910e^-4	0.986	INTERGENIC
2L	13340062	2L_13340062_SNP [dm3] 2L_13340062_SNP [dm6]	T	G	4.929e^-4	0.986	INTERGENIC
X	16635286	X_16635286_SNP [dm3] X_16741253_SNP [dm6]	A	G	4.929e^-4	0.986	SYNONYMOUS_CODING CG32568 INTRON CG9634
3L	5712238	3L_5712238_SNP [dm3] 3L_5719138_SNP [dm6]	G	A	4.935e^-4	0.986	INTRON sif
3L	10827875	3L_10827875_INS [dm3] 3L_10834775_INS [dm6]	G	AT	4.941e^-4	0.986	INTERGENIC
X	16154009	X_16154009_SNP [dm3] X_16259976_SNP [dm6]	T	G	4.943e^-4	0.986	INTERGENIC
3R	20278382	3R_20278382_SNP [dm3] 3R_24452660_SNP [dm6]	G	A	4.945e^-4	0.986	INTRON nAChRalpha1
2L	22094767	2L_22094767_DEL [dm3] 2L_22094767_DEL [dm6]	AA	A	4.951e^-4	0.986	INTERGENIC
3L	4637808	3L_4637808_INS [dm3] 3L_4637808_INS [dm6]	T	TT	4.953e^-4	0.986	INTRON axo
2L	9228841	2L_9228841_SNP [dm3] 2L_9228841_SNP [dm6]	C	T	4.955e^-4	0.986	INTRON tai
2R	12508323	2R_12508323_SNP [dm3] 2R_16620818_SNP [dm6]	T	G	4.959e^-4	0.986	INTRON CG5065
2L	2552450	2L_2552450_SNP [dm3] 2L_2552450_SNP [dm6]	C	T	4.959e^-4	0.986	INTRON CG3515
3L	10868748	3L_10868748_SNP [dm3] 3L_10875648_SNP [dm6]	A	T	4.969e^-4	0.986	UTR_3_PRIME tna DOWNSTREAM CG6418
3R	7101386	3R_7101386_SNP [dm3] 3R_11275664_SNP [dm6]	C	A	4.974e^-4	0.986	INTRON CR31386
2L	948616	2L_948616_SNP [dm3] 2L_948616_SNP [dm6]	A	C	4.976e^-4	0.986	INTRON CG4341
2L	948635	2L_948635_SNP [dm3] 2L_948635_SNP [dm6]	G	A	4.976e^-4	0.986	INTRON CG4341
3R	7552616	3R_7552616_SNP [dm3] 3R_11726894_SNP [dm6]	A	T	4.978e^-4	0.986	INTRON CG12594
2L	2853671	2L_2853671_SNP [dm3] 2L_2853671_SNP [dm6]	T	C	4.980e^-4	0.986	INTRON CG3104
2R	5076558	2R_5076558_SNP [dm3] 2R_9189053_SNP [dm6]	A	G	4.981e^-4	0.986	INTRON CG8026 & 1 other	TF binding site mE1_TFBS_sens
3R	14797349	3R_14797349_SNP [dm3] 3R_18971627_SNP [dm6]	A	G	4.982e^-4	0.986	INTRON CG42613 & 1 other
3L	4229933	3L_4229933_SNP [dm3] 3L_4229933_SNP [dm6]	T	A	4.984e^-4	0.986	INTRON ImpL2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Stat92E
2R	8114711	2R_8114711_SNP [dm3] 2R_12227206_SNP [dm6]	G	A	4.995e^-4	0.986	UPSTREAM CG8854 INTRON CG8854
X	20858501	X_20858501_DEL [dm3] X_20987474_DEL [dm6]	GGACTG	G	5.028e^-4	0.986	INTERGENIC
3L	867839	3L_867839_SNP [dm3] 3L_867839_SNP [dm6]	G	A	5.029e^-4	0.986	INTRON CG12502	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9324434	2R_9324434_SNP [dm3] 2R_13436929_SNP [dm6]	C	A	5.031e^-4	0.986	UTR_5_PRIME CG42321 UPSTREAM tRNA:CR30509 INTRON CG42321	TF binding site mE1_TFBS_chinmo
X	10439036	X_10439036_SNP [dm3] X_10545003_SNP [dm6]	T	A	5.035e^-4	0.986	INTRON spri
2R	9123880	2R_9123880_SNP [dm3] 2R_13236375_SNP [dm6]	G	A	5.038e^-4	0.986	SYNONYMOUS_CODING CG4676 DOWNSTREAM CG4679	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17658712	X_17658712_SNP [dm3] X_17764679_SNP [dm6]	G	T	5.041e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17800631	2R_17800631_SNP [dm3] 2R_21913126_SNP [dm6]	G	A	5.046e^-4	0.986	INTRON Fili
3L	10310545	3L_10310545_SNP [dm3] 3L_10317445_SNP [dm6]	T	A	5.049e^-4	0.986	INTERGENIC
2L	8699271	2L_8699271_SNP [dm3] 2L_8699271_SNP [dm6]	C	T	5.053e^-4	0.986	UTR_5_PRIME Hnf4 INTRON Hnf4
2L	6258437	2L_6258437_SNP [dm3] 2L_6258437_SNP [dm6]	A	G	5.059e^-4	0.986	INTRON Ddr
2L	7757723	2L_7757723_SNP [dm3] 2L_7757723_SNP [dm6]	T	A	5.064e^-4	0.986	DOWNSTREAM CG14538 INTRON CG7196
3L	12405935	3L_12405935_SNP [dm3] 3L_12412835_SNP [dm6]	A	C	5.071e^-4	0.986	INTRON CG32103
3L	13527299	3L_13527299_SNP [dm3] 3L_13534199_SNP [dm6]	T	C	5.081e^-4	0.986	UTR_3_PRIME bru-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7447824	2R_7447824_SNP [dm3] 2R_11560319_SNP [dm6]	G	A	5.085e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	15965205	3L_15965205_DEL [dm3] 3L_15972105_DEL [dm6]	AGATTA	A	5.087e^-4	0.986	INTRON brm
3L	867755	3L_867755_SNP [dm3] 3L_867755_SNP [dm6]	A	G	5.093e^-4	0.986	INTRON CG12502	TF binding site mE1_TFBS_chinmo
X	2370776	X_2370776_SNP [dm3] X_2476743_SNP [dm6]	A	T	5.094e^-4	0.986	UTR_3_PRIME trol INTRON trol
2L	579954	2L_579954_SNP [dm3] 2L_579954_SNP [dm6]	T	A	5.097e^-4	0.986	DOWNSTREAM Pph13 INTERGENIC
3R	23495384	3R_23495384_SNP [dm3] 3R_27669662_SNP [dm6]	A	C	5.102e^-4	0.986	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9287065	X_9287065_SNP [dm3] X_9393032_SNP [dm6]	G	C	5.103e^-4	0.986	INTRON mgl
3R	2846128	3R_2846128_SNP [dm3] 3R_7020406_SNP [dm6]	T	G	5.112e^-4	0.986	INTERGENIC
2R	8156260	2R_8156260_SNP [dm3] 2R_12268755_SNP [dm6]	T	C	5.119e^-4	0.986	INTRON Cam
3L	1741314	3L_1741314_SNP [dm3] 3L_1741314_SNP [dm6]	T	A	5.121e^-4	0.986	UPSTREAM Gk INTRON Gk	TF binding site mE1_TFBS_cad
3L	5873337	3L_5873337_SNP [dm3] 3L_5880237_SNP [dm6]	T	A	5.125e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26373565	3R_26373565_SNP [dm3] 3R_30547843_SNP [dm6]	G	A	5.126e^-4	0.986	INTRON tmod
2R	18183757	2R_18183757_SNP [dm3] 2R_22296252_SNP [dm6]	C	T	5.128e^-4	0.986	SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_cad
2R	20265980	2R_20265980_SNP [dm3] 2R_24378457_SNP [dm6]	G	A	5.130e^-4	0.986	SYNONYMOUS_CODING CG13578 DOWNSTREAM mAChR-A	TF binding site mE1_TFBS_chinmo
2L	19181973	2L_19181973_SNP [dm3] 2L_19181973_SNP [dm6]	G	T	5.137e^-4	0.986	UTR_3_PRIME CG42688 UPSTREAM CG17568 DOWNSTREAM CG42688	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2981345	3L_2981345_SNP [dm3] 3L_2981345_SNP [dm6]	C	G	5.145e^-4	0.986	NON_SYNONYMOUS_CODING CG2107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	13339684	2L_13339684_SNP [dm3] 2L_13339684_SNP [dm6]	G	C	5.148e^-4	0.986	INTERGENIC
2L	1633587	2L_1633587_SNP [dm3] 2L_1633587_SNP [dm6]	T	A	5.153e^-4	0.986	INTERGENIC
3L	11438944	3L_11438944_SNP [dm3] 3L_11445844_SNP [dm6]	G	A	5.162e^-4	0.986	SYNONYMOUS_CODING CG7557 UPSTREAM CR44549	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12591606	3L_12591606_SNP [dm3] 3L_12598506_SNP [dm6]	C	T	5.164e^-4	0.986	INTERGENIC
3R	16213127	3R_16213127_SNP [dm3] 3R_20387405_SNP [dm6]	G	A	5.164e^-4	0.986	INTRON Gfrl
X	20152579	X_20152579_SNP [dm3] X_20281552_SNP [dm6]	A	T	5.167e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	14702936	3R_14702936_SNP [dm3] 3R_18877214_SNP [dm6]	G	C	5.175e^-4	0.986	DOWNSTREAM CG14298 INTERGENIC
2L	7126790	2L_7126790_SNP [dm3] 2L_7126790_SNP [dm6]	G	A	5.180e^-4	0.986	INTRON Pvf3
3L	4029917	3L_4029917_SNP [dm3] 3L_4029917_SNP [dm6]	A	C	5.181e^-4	0.986	SYNONYMOUS_CODING Gr64b UTR_5_PRIME Gr64c UPSTREAM Gr64c
2R	9123392	2R_9123392_SNP [dm3] 2R_13235887_SNP [dm6]	T	C	5.183e^-4	0.986	UPSTREAM CG4676 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3419312	2L_3419312_INS [dm3] 2L_3419312_INS [dm6]	G	GGTCAG	5.188e^-4	0.986	INTRON pgant2
X	2403141	X_2403141_SNP [dm3] X_2509108_SNP [dm6]	T	A	5.202e^-4	0.986	INTRON trol
3L	868285	3L_868285_SNP [dm3] 3L_868285_SNP [dm6]	T	C	5.204e^-4	0.986	SYNONYMOUS_CODING CG12502	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10786935	X_10786935_SNP [dm3] X_10892902_SNP [dm6]	T	A	5.212e^-4	0.986	UPSTREAM CR44524 DOWNSTREAM CR45616 & 1 other INTERGENIC
X	10903621	X_10903621_SNP [dm3] X_11009588_SNP [dm6]	C	T	5.215e^-4	0.986	INTRON CG42339
3R	17328363	3R_17328363_SNP [dm3] 3R_21502641_SNP [dm6]	A	C	5.219e^-4	0.986	SYNONYMOUS_CODING C15	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18877064	2R_18877064_SNP [dm3] 2R_22989541_SNP [dm6]	C	T	5.232e^-4	0.986	INTRON twi
3L	6281240	3L_6281240_SNP [dm3] 3L_6288140_SNP [dm6]	T	A	5.232e^-4	0.986	INTERGENIC
3R	21032994	3R_21032994_SNP [dm3] 3R_25207272_SNP [dm6]	G	A	5.235e^-4	0.986	INTRON CG13654 & 1 other
3R	16044035	3R_16044035_SNP [dm3] 3R_20218313_SNP [dm6]	A	T	5.242e^-4	0.986	INTRON Nlg4
2L	10442205	2L_10442205_SNP [dm3] 2L_10442205_SNP [dm6]	A	C	5.242e^-4	0.986	UPSTREAM loh & 1 other INTERGENIC
X	17656401	X_17656401_SNP [dm3] X_17762368_SNP [dm6]	T	C	5.242e^-4	0.986	INTERGENIC
2R	15590971	2R_15590971_SNP [dm3] 2R_19703466_SNP [dm6]	A	G	5.248e^-4	0.986	NON_SYNONYMOUS_CODING Obp56d
3R	14605288	3R_14605288_SNP [dm3] 3R_18779566_SNP [dm6]	A	T	5.249e^-4	0.986	START_GAINED CG7720 UTR_5_PRIME CG7720 INTRON CG7720
2R	10018203	2R_10018203_SNP [dm3] 2R_14130698_SNP [dm6]	T	A	5.250e^-4	0.986	INTRON Prosap
3R	8801087	3R_8801087_SNP [dm3] 3R_12975365_SNP [dm6]	A	G	5.255e^-4	0.986	UPSTREAM CG7381 INTRON CG7381
3L	2975373	3L_2975373_SNP [dm3] 3L_2975373_SNP [dm6]	C	T	5.263e^-4	0.986	DOWNSTREAM CR44530 INTERGENIC
2R	1080001	2R_1080001_SNP [dm3] 2R_5192496_SNP [dm6]	C	A	5.274e^-4	0.986	INTRON Nipped-A
3L	15589832	3L_15589832_SNP [dm3] 3L_15596732_SNP [dm6]	C	A	5.282e^-4	0.986	INTRON RhoGAP71E	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_inv
3R	7933589	3R_7933589_SNP [dm3] 3R_12107867_SNP [dm6]	G	A	5.284e^-4	0.986	NON_SYNONYMOUS_CODING dpr17	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	9303634	3L_9303634_SNP [dm3] 3L_9310534_SNP [dm6]	C	T	5.291e^-4	0.986	INTERGENIC
2L	6311068	2L_6311068_SNP [dm3] 2L_6311068_SNP [dm6]	G	A	5.309e^-4	0.986	INTRON Ddr
3R	26758687	3R_26758687_SNP [dm3] 3R_30932965_SNP [dm6]	G	T	5.317e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	755467	2L_755467_SNP [dm3] 2L_755467_SNP [dm6]	G	A	5.319e^-4	0.986	INTRON GABA-B-R3
3L	19079686	3L_19079686_SNP [dm3] 3L_19086586_SNP [dm6]	A	C	5.323e^-4	0.986	UPSTREAM Mkp3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12413023	3L_12413023_SNP [dm3] 3L_12419923_SNP [dm6]	G	A	5.334e^-4	0.986	INTERGENIC
2L	19080807	2L_19080807_SNP [dm3] 2L_19080807_SNP [dm6]	T	C	5.340e^-4	0.986	INTRON Lim3
3L	9514625	3L_9514625_SNP [dm3] 3L_9521525_SNP [dm6]	A	C	5.349e^-4	0.986	INTRON CG33700
3R	14333194	3R_14333194_SNP [dm3] 3R_18507472_SNP [dm6]	G	A	5.355e^-4	0.986	UPSTREAM fru INTRON fru
3L	1589114	3L_1589114_SNP [dm3] 3L_1589114_SNP [dm6]	C	T	5.358e^-4	0.986	INTRON CG13917
3L	19087271	3L_19087271_SNP [dm3] 3L_19094171_SNP [dm6]	G	T	5.359e^-4	0.986	SYNONYMOUS_CODING MESR6 DOWNSTREAM CG11577	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16213175	3R_16213175_SNP [dm3] 3R_20387453_SNP [dm6]	T	C	5.362e^-4	0.986	SYNONYMOUS_CODING Gfrl
3L	7457538	3L_7457538_SNP [dm3] 3L_7464438_SNP [dm6]	T	C	5.365e^-4	0.986	INTERGENIC
2R	12440238	2R_12440238_SNP [dm3] 2R_16552733_SNP [dm6]	A	G	5.365e^-4	0.986	INTRON Syn2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	16643286	X_16643286_DEL [dm3] X_16749253_DEL [dm6]	GAAG	G	5.370e^-4	0.986	INTRON CG9634	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21135855	X_21135855_SNP [dm3] X_21264828_SNP [dm6]	G	A	5.376e^-4	0.986	INTRON CG32521
3R	18231064	3R_18231064_SNP [dm3] 3R_22405342_SNP [dm6]	G	A	5.379e^-4	0.986	UPSTREAM CG13855 DOWNSTREAM CG13856 INTERGENIC
2L	4528749	2L_4528749_SNP [dm3] 2L_4528749_SNP [dm6]	G	C	5.386e^-4	0.986	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	16167160	3L_16167160_SNP [dm3] 3L_16174060_SNP [dm6]	G	T	5.393e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24282871	3R_24282871_SNP [dm3] 3R_28457149_SNP [dm6]	C	G	5.395e^-4	0.986	INTRON beat-VI

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.416e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.029361
In_3R_Mo	0.009429

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	6.9897	0.0304
In_3R_Mo	7.6928	0.0214

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1496 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	6273253	2L_6273253_SNP [dm3] 2L_6273253_SNP [dm6]	A	T	2.258e^-7	0.424	INTRON Ddr
2L	12672075	2L_12672075_SNP [dm3] 2L_12672075_SNP [dm6]	T	G	5.496e^-7	0.515	INTRON pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3L	19081282	3L_19081282_SNP [dm3] 3L_19088182_SNP [dm6]	T	G	2.062e^-6	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	19081248	3L_19081248_SNP [dm3] 3L_19088148_SNP [dm6]	C	A	2.960e^-6	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19652414	2R_19652414_SNP [dm3] 2R_23764891_SNP [dm6]	T	A	4.147e^-6	1	INTRON CG9850
3L	9113481	3L_9113481_SNP [dm3] 3L_9120381_SNP [dm6]	A	T	4.615e^-6	1	INTRON bol
3L	9113482	3L_9113482_SNP [dm3] 3L_9120382_SNP [dm6]	A	T	4.615e^-6	1	INTRON bol
3L	12413081	3L_12413081_SNP [dm3] 3L_12419981_SNP [dm6]	G	C	4.679e^-6	1	INTERGENIC
3R	14702892	3R_14702892_SNP [dm3] 3R_18877170_SNP [dm6]	T	G	6.560e^-6	1	UTR_3_PRIME CG14298
3R	13573603	3R_13573603_SNP [dm3] 3R_17747881_SNP [dm6]	C	A	6.642e^-6	1	DOWNSTREAM TyrRII INTERGENIC
X	5531393	X_5531393_SNP [dm3] X_5637360_SNP [dm6]	A	T	8.707e^-6	1	INTRON CG42492	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5531370	X_5531370_SNP [dm3] X_5637337_SNP [dm6]	C	G	9.187e^-6	1	INTRON CG42492	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8234112	X_8234112_SNP [dm3] X_8340079_SNP [dm6]	G	A	9.281e^-6	1	INTRON nAChRalpha3
2R	11309804	2R_11309804_SNP [dm3] 2R_15422299_SNP [dm6]	G	A	9.513e^-6	1	DOWNSTREAM CG30472 INTRON CG43729	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26647054	3R_26647054_SNP [dm3] 3R_30821332_SNP [dm6]	A	T	1.293e^-5	1	INTRON cindr	TF binding site BDTNP1_TFBS_z
3R	26647055	3R_26647055_SNP [dm3] 3R_30821333_SNP [dm6]	T	G	1.293e^-5	1	INTRON cindr	TF binding site BDTNP1_TFBS_z
X	4549705	X_4549705_SNP [dm3] X_4655672_SNP [dm6]	T	G	1.373e^-5	1	INTRON Cbp80
X	5531339	X_5531339_SNP [dm3] X_5637306_SNP [dm6]	C	T	1.385e^-5	1	INTRON CG42492	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12413023	3L_12413023_SNP [dm3] 3L_12419923_SNP [dm6]	G	A	1.386e^-5	1	INTERGENIC
2R	18616001	2R_18616001_SNP [dm3] 2R_22728496_SNP [dm6]	A	G	1.509e^-5	1	INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	6268288	2L_6268288_SNP [dm3] 2L_6268288_SNP [dm6]	G	A	1.550e^-5	1	INTRON Ddr
2L	12672046	2L_12672046_SNP [dm3] 2L_12672046_SNP [dm6]	T	G	1.632e^-5	1	INTRON pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
X	4549037	X_4549037_SNP [dm3] X_4655004_SNP [dm6]	G	C	1.663e^-5	1	UPSTREAM CG15473 INTRON Cbp80
2L	6722964	2L_6722964_SNP [dm3] 2L_6722964_SNP [dm6]	A	G	1.742e^-5	1	UPSTREAM Liprin-alpha & 1 other INTRON homer	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
X	2485884	X_2485884_SNP [dm3] X_2591851_SNP [dm6]	C	T	1.751e^-5	1	UPSTREAM egh INTRON egh
3L	5221164	3L_5221164_INS [dm3] 3L_5228064_INS [dm6]	A	AA	1.777e^-5	1	INTRON shep
X	2599994	X_2599994_DEL [dm3] X_2705961_DEL [dm6]	TT	T	1.805e^-5	1	DOWNSTREAM CG2680 INTRON eIF2B-beta	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1133344	3L_1133344_SNP [dm3] 3L_1133344_SNP [dm6]	C	T	1.841e^-5	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2R	20050887	2R_20050887_SNP [dm3] 2R_24163364_SNP [dm6]	A	T	1.867e^-5	1	INTRON CG3328
2L	12672082	2L_12672082_SNP [dm3] 2L_12672082_SNP [dm6]	A	G	1.967e^-5	1	INTRON pdm2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	19562023	2R_19562023_SNP [dm3] 2R_23674500_SNP [dm6]	C	G	2.050e^-5	1	SYNONYMOUS_CODING Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1687430	2L_1687430_SNP [dm3] 2L_1687430_SNP [dm6]	C	G	2.090e^-5	1	INTRON chinmo	TF binding site mE1_TFBS_HSA
2L	16494011	2L_16494011_SNP [dm3] 2L_16494011_SNP [dm6]	A	C	2.175e^-5	1	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA
2R	8907860	2R_8907860_SNP [dm3] 2R_13020355_SNP [dm6]	G	A	2.247e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D
3L	19081109	3L_19081109_SNP [dm3] 3L_19088009_SNP [dm6]	A	C	2.278e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16401412	2R_16401412_SNP [dm3] 2R_20513907_SNP [dm6]	G	T	2.349e^-5	1	UPSTREAM CG13426 INTERGENIC
3L	8319777	3L_8319777_SNP [dm3] 3L_8326677_SNP [dm6]	C	T	2.451e^-5	1	INTRON CG34461	TF binding site mE1_TFBS_cad
2L	948766	2L_948766_SNP [dm3] 2L_948766_SNP [dm6]	T	A	2.508e^-5	1	INTRON CG4341
3R	21997864	3R_21997864_SNP [dm3] 3R_26172142_SNP [dm6]	G	A	2.609e^-5	1	INTRON CG31323
X	2600533	X_2600533_SNP [dm3] X_2706500_SNP [dm6]	T	G	2.719e^-5	1	SYNONYMOUS_CODING CG2680 DOWNSTREAM eIF2B-beta	TF binding site mE1_TFBS_cad
2L	12136659	2L_12136659_SNP [dm3] 2L_12136659_SNP [dm6]	T	A	2.759e^-5	1	INTERGENIC
X	5531308	X_5531308_SNP [dm3] X_5637275_SNP [dm6]	C	T	2.794e^-5	1	INTRON CG42492	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12137514	2R_12137514_SNP [dm3] 2R_16250009_SNP [dm6]	A	T	2.795e^-5	1	UPSTREAM CngA INTRON CngA
2R	20249679	2R_20249679_SNP [dm3] 2R_24362156_SNP [dm6]	T	C	2.840e^-5	1	INTRON bs & 1 other
X	8234583	X_8234583_SNP [dm3] X_8340550_SNP [dm6]	T	G	2.912e^-5	1	INTRON nAChRalpha3
X	5495954	X_5495954_SNP [dm3] X_5601921_SNP [dm6]	C	T	2.940e^-5	1	INTRON Vsx1	TF binding site BDTNP1_TFBS_dl
2R	15255925	2R_15255925_SNP [dm3] 2R_19368420_SNP [dm6]	T	C	2.942e^-5	1	NON_SYNONYMOUS_CODING CG9416
2R	15255935	2R_15255935_SNP [dm3] 2R_19368430_SNP [dm6]	T	A	2.942e^-5	1	SYNONYMOUS_CODING CG9416
X	2837435	X_2837435_SNP [dm3] X_2943402_SNP [dm6]	C	T	2.971e^-5	1	UTR_5_PRIME CG14422 INTRON kirre
3L	2545311	3L_2545311_SNP [dm3] 3L_2545311_SNP [dm6]	C	T	2.994e^-5	1	INTRON Spn
2L	16511246	2L_16511246_SNP [dm3] 2L_16511246_SNP [dm6]	T	C	3.019e^-5	1	SYNONYMOUS_CODING CG5953	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2961133	3L_2961133_SNP [dm3] 3L_2961133_SNP [dm6]	A	T	3.052e^-5	1	UPSTREAM Or63a & 1 other INTERGENIC
3L	10552466	3L_10552466_SNP [dm3] 3L_10559366_SNP [dm6]	G	T	3.097e^-5	1	UPSTREAM CG6527 INTRON A2bp1
2L	507474	2L_507474_SNP [dm3] 2L_507474_SNP [dm6]	G	A	3.130e^-5	1	INTRON ush
2R	6540787	2R_6540787_SNP [dm3] 2R_10653282_SNP [dm6]	G	T	3.168e^-5	1	INTERGENIC
2R	15289194	2R_15289194_SNP [dm3] 2R_19401689_SNP [dm6]	G	A	3.252e^-5	1	DOWNSTREAM hts & 1 other INTRON hts
3L	3533857	3L_3533857_SNP [dm3] 3L_3533857_SNP [dm6]	C	T	3.494e^-5	1	INTRON Eip63E
X	20959471	X_20959471_SNP [dm3] X_21088444_SNP [dm6]	T	G	3.510e^-5	1	INTERGENIC	transposable element FlyBase
X	20959472	X_20959472_SNP [dm3] X_21088445_SNP [dm6]	T	A	3.510e^-5	1	INTERGENIC	transposable element FlyBase
2L	6273258	2L_6273258_MNP [dm3] 2L_6273258_MNP [dm6]	GCATTCT	AAAAATA	3.543e^-5	1	INTRON Ddr
3R	21997959	3R_21997959_SNP [dm3] 3R_26172237_SNP [dm6]	T	A	3.547e^-5	1	INTRON CG31323
2L	6273244	2L_6273244_SNP [dm3] 2L_6273244_SNP [dm6]	C	T	3.581e^-5	1	INTRON Ddr
X	2485879	X_2485879_SNP [dm3] X_2591846_SNP [dm6]	G	A	3.679e^-5	1	UPSTREAM egh INTRON egh
X	4730473	X_4730473_SNP [dm3] X_4836440_SNP [dm6]	C	T	3.707e^-5	1	INTERGENIC
X	3639564	X_3639564_SNP [dm3] X_3745531_SNP [dm6]	T	C	3.965e^-5	1	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	12672136	2L_12672136_SNP [dm3] 2L_12672136_SNP [dm6]	T	A	3.989e^-5	1	INTRON pdm2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	12522680	3L_12522680_SNP [dm3] 3L_12529580_SNP [dm6]	G	A	4.015e^-5	1	DOWNSTREAM Tsf2 INTRON nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
3L	19081746	3L_19081746_SNP [dm3] 3L_19088646_SNP [dm6]	G	A	4.022e^-5	1	INTERGENIC
3R	14885617	3R_14885617_SNP [dm3] 3R_19059895_SNP [dm6]	T	A	4.048e^-5	1	INTRON cdi	TF binding site BDTNP1_TFBS_dl
X	12024981	X_12024981_SNP [dm3] X_12130948_SNP [dm6]	C	A	4.135e^-5	1	INTRON Ten-a
X	14469472	X_14469472_INS [dm3] X_14575439_INS [dm6]	T	TT	4.163e^-5	1	INTERGENIC
2L	3523947	2L_3523947_SNP [dm3] 2L_3523947_SNP [dm6]	C	A	4.192e^-5	1	NON_SYNONYMOUS_CODING Sr-CIV
3L	8657020	3L_8657020_SNP [dm3] 3L_8663920_SNP [dm6]	C	T	4.219e^-5	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12672035	2L_12672035_SNP [dm3] 2L_12672035_SNP [dm6]	T	A	4.239e^-5	1	INTRON pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2R	13092489	2R_13092489_SNP [dm3] 2R_17204984_SNP [dm6]	C	T	4.286e^-5	1	UPSTREAM CG43237 INTERGENIC
X	2599976	X_2599976_SNP [dm3] X_2705943_SNP [dm6]	C	T	4.323e^-5	1	DOWNSTREAM CG2680 INTRON eIF2B-beta	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	27179032	3R_27179032_SNP [dm3] 3R_31353310_SNP [dm6]	C	A	4.465e^-5	1	INTRON CG34347
3R	1870209	3R_1870209_SNP [dm3] 3R_6044487_SNP [dm6]	C	T	4.602e^-5	1	INTERGENIC
3L	6702898	3L_6702898_SNP [dm3] 3L_6709798_SNP [dm6]	G	A	4.731e^-5	1	DOWNSTREAM CG8519 INTERGENIC
2L	7765303	2L_7765303_SNP [dm3] 2L_7765303_SNP [dm6]	G	T	4.804e^-5	1	SYNONYMOUS_CODING CG7196
3L	5815770	3L_5815770_SNP [dm3] 3L_5822670_SNP [dm6]	C	T	4.917e^-5	1	INTRON vn
3L	6702869	3L_6702869_SNP [dm3] 3L_6709769_SNP [dm6]	G	C	5.047e^-5	1	DOWNSTREAM CG8519 INTERGENIC
3R	13573600	3R_13573600_SNP [dm3] 3R_17747878_SNP [dm6]	A	C	5.163e^-5	1	DOWNSTREAM TyrRII INTERGENIC
X	12608588	X_12608588_SNP [dm3] X_12714555_SNP [dm6]	G	A	5.192e^-5	1	SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad
3R	22536544	3R_22536544_SNP [dm3] 3R_26710822_SNP [dm6]	C	A	5.194e^-5	1	INTRON amon
2L	9122425	2L_9122425_SNP [dm3] 2L_9122425_SNP [dm6]	T	A	5.196e^-5	1	UPSTREAM CR44616 INTERGENIC
X	13254622	X_13254622_SNP [dm3] X_13360589_SNP [dm6]	C	T	5.289e^-5	1	INTRON Syt12
X	8234110	X_8234110_SNP [dm3] X_8340077_SNP [dm6]	G	T	5.360e^-5	1	INTRON nAChRalpha3
2R	19070353	2R_19070353_SNP [dm3] 2R_23182830_SNP [dm6]	G	A	5.522e^-5	1	INTRON CG34371
2L	3259928	2L_3259928_SNP [dm3] 2L_3259928_SNP [dm6]	C	T	5.623e^-5	1	INTERGENIC
X	18183682	X_18183682_SNP [dm3] X_18289649_SNP [dm6]	T	A	5.705e^-5	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	6273248	2L_6273248_SNP [dm3] 2L_6273248_SNP [dm6]	T	C	5.908e^-5	1	INTRON Ddr
2L	948773	2L_948773_SNP [dm3] 2L_948773_SNP [dm6]	A	T	6.024e^-5	1	INTRON CG4341
2L	7126790	2L_7126790_SNP [dm3] 2L_7126790_SNP [dm6]	G	A	6.113e^-5	1	INTRON Pvf3
X	3658471	X_3658471_SNP [dm3] X_3764438_SNP [dm6]	G	A	6.248e^-5	1	INTRON tlk	TF binding site BDTNP1_TFBS_dl
2R	8907871	2R_8907871_SNP [dm3] 2R_13020366_SNP [dm6]	A	G	6.294e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_D
2L	7763048	2L_7763048_SNP [dm3] 2L_7763048_SNP [dm6]	G	A	6.333e^-5	1	INTRON CG7196
2L	15187088	2L_15187088_SNP [dm3] 2L_15187088_SNP [dm6]	C	T	6.393e^-5	1	INTRON CG4168
2R	15255908	2R_15255908_SNP [dm3] 2R_19368403_SNP [dm6]	C	T	6.477e^-5	1	SYNONYMOUS_CODING CG9416
2L	16505021	2L_16505021_SNP [dm3] 2L_16505021_SNP [dm6]	A	G	6.512e^-5	1	INTRON Tpr2
X	8235204	X_8235204_SNP [dm3] X_8341171_SNP [dm6]	A	C	6.582e^-5	1	INTRON nAChRalpha3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9582625	2L_9582625_SNP [dm3] 2L_9582625_SNP [dm6]	G	A	6.648e^-5	1	UPSTREAM gcm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	17474722	2R_17474722_SNP [dm3] 2R_21587217_SNP [dm6]	A	G	6.708e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16345268	X_16345268_SNP [dm3] X_16451235_SNP [dm6]	A	C	6.771e^-5	1	INTRON Rbp2	TF binding site mE1_TFBS_HSA
2L	16300034	2L_16300034_SNP [dm3] 2L_16300034_SNP [dm6]	T	G	6.773e^-5	1	UPSTREAM CG17328 & 1 other INTRON CG17328	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	14160583	X_14160583_SNP [dm3] X_14266550_SNP [dm6]	C	A	6.843e^-5	1	UTR_5_PRIME na UPSTREAM CG13404
X	3658746	X_3658746_MNP [dm3] X_3764713_MNP [dm6]	GCA	AGT	6.912e^-5	1	INTRON tlk
X	3658752	X_3658752_SNP [dm3] X_3764719_SNP [dm6]	C	A	6.912e^-5	1	INTRON tlk
X	3658755	X_3658755_SNP [dm3] X_3764722_SNP [dm6]	A	T	6.912e^-5	1	INTRON tlk
2R	14616591	2R_14616591_SNP [dm3] 2R_18729086_SNP [dm6]	G	A	7.095e^-5	1	INTRON Hs3st-A & 1 other
3R	21384771	3R_21384771_SNP [dm3] 3R_25559049_SNP [dm6]	C	G	7.194e^-5	1	INTRON msi
3L	3532194	3L_3532194_SNP [dm3] 3L_3532194_SNP [dm6]	A	G	7.325e^-5	1	INTRON Eip63E
2L	12136392	2L_12136392_SNP [dm3] 2L_12136392_SNP [dm6]	G	T	7.382e^-5	1	INTERGENIC
2R	17173354	2R_17173354_SNP [dm3] 2R_21285849_SNP [dm6]	G	A	7.451e^-5	1	SYNONYMOUS_CODING CG10505 DOWNSTREAM MFS16
2L	7259916	2L_7259916_SNP [dm3] 2L_7259916_SNP [dm6]	C	T	7.480e^-5	1	INTRON Wnt4
3L	10600602	3L_10600602_SNP [dm3] 3L_10607502_SNP [dm6]	C	G	7.494e^-5	1	INTERGENIC
X	3658751	X_3658751_SNP [dm3] X_3764718_SNP [dm6]	G	A	7.558e^-5	1	INTRON tlk
3L	4428185	3L_4428185_SNP [dm3] 3L_4428185_SNP [dm6]	T	C	7.594e^-5	1	INTERGENIC
3L	3532203	3L_3532203_DEL [dm3] 3L_3532203_DEL [dm6]	TATGGCACATT...	T	7.685e^-5	1	INTRON Eip63E
3R	22172108	3R_22172108_SNP [dm3] 3R_26346386_SNP [dm6]	A	T	7.711e^-5	1	UPSTREAM CG6036 INTRON CG33970	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3532162	3L_3532162_SNP [dm3] 3L_3532162_SNP [dm6]	A	G	7.756e^-5	1	INTRON Eip63E
2L	10681565	2L_10681565_SNP [dm3] 2L_10681565_SNP [dm6]	T	G	7.872e^-5	1	UTR_3_PRIME CG17105 UPSTREAM CG17107 DOWNSTREAM CG17105
2L	11422763	2L_11422763_INS [dm3] 2L_11422763_INS [dm6]	G	GCT	7.893e^-5	1	INTERGENIC
3L	19081773	3L_19081773_SNP [dm3] 3L_19088673_SNP [dm6]	T	A	7.914e^-5	1	INTERGENIC
2L	3144663	2L_3144663_SNP [dm3] 2L_3144663_SNP [dm6]	T	G	7.918e^-5	1	UTR_5_PRIME toc DOWNSTREAM CG12400	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	13876687	X_13876687_SNP [dm3] X_13982654_SNP [dm6]	T	A	7.961e^-5	1	INTRON mamo
3R	14152517	3R_14152517_SNP [dm3] 3R_18326795_SNP [dm6]	T	C	7.978e^-5	1	INTRON CG31235
2R	8590330	2R_8590330_SNP [dm3] 2R_12702825_SNP [dm6]	A	T	8.002e^-5	1	INTERGENIC
X	3554964	X_3554964_SNP [dm3] X_3660931_SNP [dm6]	G	A	8.112e^-5	1	INTRON AstA-R1
2R	19667012	2R_19667012_SNP [dm3] 2R_23779489_SNP [dm6]	T	G	8.217e^-5	1	INTRON CG9850
2R	16078407	2R_16078407_INS [dm3] 2R_20190902_INS [dm6]	C	CA	8.266e^-5	1	INTERGENIC
X	3655713	X_3655713_SNP [dm3] X_3761680_SNP [dm6]	C	A	8.332e^-5	1	INTRON tlk	TF binding site BDTNP1_TFBS_dl
2R	17944916	2R_17944916_SNP [dm3] 2R_22057411_SNP [dm6]	G	A	8.428e^-5	1	SYNONYMOUS_CODING CG13500	TF binding site mE1_TFBS_cad
3R	11618058	3R_11618058_SNP [dm3] 3R_15792336_SNP [dm6]	G	T	8.517e^-5	1	NON_SYNONYMOUS_CODING c_3_G UPSTREAM Acyp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	7349462	2R_7349462_SNP [dm3] 2R_11461957_SNP [dm6]	C	A	8.573e^-5	1	UTR_3_PRIME E_Pc_	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17944884	2R_17944884_SNP [dm3] 2R_22057379_SNP [dm6]	A	C	8.594e^-5	1	SYNONYMOUS_CODING CG13500	TF binding site mE1_TFBS_cad
X	3658917	X_3658917_SNP [dm3] X_3764884_SNP [dm6]	C	T	8.608e^-5	1	INTRON tlk
3L	1124286	3L_1124286_SNP [dm3] 3L_1124286_SNP [dm6]	C	T	8.663e^-5	1	INTERGENIC	regulatory region REDfly_CRMs
2R	19667582	2R_19667582_SNP [dm3] 2R_23780059_SNP [dm6]	G	A	8.771e^-5	1	INTRON CG9850
3L	11424880	3L_11424880_INS [dm3] 3L_11431780_INS [dm6]	A	AACTA	8.812e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	7071286	3L_7071286_SNP [dm3] 3L_7078186_SNP [dm6]	T	G	8.846e^-5	1	UPSTREAM CG8641 INTERGENIC
X	3657067	X_3657067_SNP [dm3] X_3763034_SNP [dm6]	G	T	8.966e^-5	1	INTRON tlk
X	20959492	X_20959492_INS [dm3] X_21088465_INS [dm6]	A	AA	8.977e^-5	1	INTERGENIC	transposable element FlyBase
3L	10600604	3L_10600604_SNP [dm3] 3L_10607504_SNP [dm6]	G	C	9.007e^-5	1	INTERGENIC
2L	6283683	2L_6283683_SNP [dm3] 2L_6283683_SNP [dm6]	A	G	9.106e^-5	1	INTRON Ddr
2R	12137504	2R_12137504_SNP [dm3] 2R_16249999_SNP [dm6]	C	T	9.116e^-5	1	UPSTREAM CngA INTRON CngA
2R	17166334	2R_17166334_SNP [dm3] 2R_21278829_SNP [dm6]	T	C	9.132e^-5	1	SPLICE_SITE_REGION Rgk3 INTRON Rgk3
2L	12672041	2L_12672041_SNP [dm3] 2L_12672041_SNP [dm6]	A	G	9.156e^-5	1	INTRON pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2R	15289251	2R_15289251_SNP [dm3] 2R_19401746_SNP [dm6]	A	T	9.383e^-5	1	UTR_3_PRIME hts DOWNSTREAM CR43430 INTRON hts
3R	13918482	3R_13918482_SNP [dm3] 3R_18092760_SNP [dm6]	A	G	9.438e^-5	1	INTRON sr	TF binding site BDTNP1_TFBS_twi
2R	19906902	2R_19906902_SNP [dm3] 2R_24019379_SNP [dm6]	A	G	9.442e^-5	1	SYNONYMOUS_CODING CG3121 DOWNSTREAM CG3907	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2389380	X_2389380_SNP [dm3] X_2495347_SNP [dm6]	C	T	9.473e^-5	1	INTRON trol	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21304509	2L_21304509_SNP [dm3] 2L_21304509_SNP [dm6]	T	C	9.483e^-5	1	UPSTREAM Mio INTRON Mio
2R	12447331	2R_12447331_SNP [dm3] 2R_16559826_SNP [dm6]	G	A	9.628e^-5	1	SYNONYMOUS_CODING DAT
X	5109940	X_5109940_SNP [dm3] X_5215907_SNP [dm6]	G	A	9.659e^-5	1	INTRON CG15465 & 1 other
2L	16509401	2L_16509401_SNP [dm3] 2L_16509401_SNP [dm6]	A	G	9.685e^-5	1	UTR_3_PRIME CG5953
2R	19652381	2R_19652381_SNP [dm3] 2R_23764858_SNP [dm6]	G	C	9.746e^-5	1	INTRON CG9850
3L	4088094	3L_4088094_INS [dm3] 3L_4088094_INS [dm6]	T	TTATATAAATATAGAAGATA...	9.774e^-5	1	INTRON Gad1 & 1 other
X	2984321	X_2984321_SNP [dm3] X_3090288_SNP [dm6]	T	C	9.807e^-5	1	INTRON kirre
3L	13916447	3L_13916447_SNP [dm3] 3L_13923347_SNP [dm6]	T	A	9.861e^-5	1	INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr mE1_TFBS_Trl
2L	16299981	2L_16299981_SNP [dm3] 2L_16299981_SNP [dm6]	G	T	1.002e^-4	1	UTR_5_PRIME CG17328 UPSTREAM CG17328 & 1 other	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	3646641	X_3646641_SNP [dm3] X_3752608_SNP [dm6]	G	A	1.003e^-4	1	INTRON tlk
2R	19666327	2R_19666327_SNP [dm3] 2R_23778804_SNP [dm6]	T	C	1.003e^-4	1	INTRON CG9850
2L	11985796	2L_11985796_SNP [dm3] 2L_11985796_SNP [dm6]	A	G	1.006e^-4	1	INTRON CG6686
X	4290981	X_4290981_SNP [dm3] X_4396948_SNP [dm6]	A	T	1.022e^-4	1	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17171812	2R_17171812_DEL [dm3] 2R_21284307_DEL [dm6]	TT	T	1.025e^-4	1	DOWNSTREAM CG10505 INTRON MFS16	TF binding site mE1_TFBS_cad
2R	11397672	2R_11397672_INS [dm3] 2R_15510167_INS [dm6]	T	TAT	1.043e^-4	1	INTERGENIC
2R	10819882	2R_10819882_SNP [dm3] 2R_14932377_SNP [dm6]	C	T	1.058e^-4	1	INTRON CG10253
3R	1864503	3R_1864503_SNP [dm3] 3R_6038781_SNP [dm6]	C	G	1.067e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14399715	2R_14399715_SNP [dm3] 2R_18512210_SNP [dm6]	G	A	1.077e^-4	1	INTERGENIC
2R	12351768	2R_12351768_SNP [dm3] 2R_16464263_SNP [dm6]	C	T	1.097e^-4	1	INTERGENIC
2R	17173164	2R_17173164_SNP [dm3] 2R_21285659_SNP [dm6]	G	A	1.101e^-4	1	UTR_3_PRIME MFS16 & 1 other
X	3658740	X_3658740_DEL [dm3] X_3764707_DEL [dm6]	GTC	A	1.102e^-4	1	INTRON tlk
2L	10711830	2L_10711830_SNP [dm3] 2L_10711830_SNP [dm6]	T	A	1.102e^-4	1	INTERGENIC
2L	1633603	2L_1633603_SNP [dm3] 2L_1633603_SNP [dm6]	T	C	1.117e^-4	1	INTERGENIC
2L	6259301	2L_6259301_SNP [dm3] 2L_6259301_SNP [dm6]	G	A	1.125e^-4	1	INTRON Ddr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21384778	3R_21384778_SNP [dm3] 3R_25559056_SNP [dm6]	G	A	1.140e^-4	1	INTRON msi
2R	10668456	2R_10668456_SNP [dm3] 2R_14780951_SNP [dm6]	G	C	1.152e^-4	1	INTRON kn
X	3657066	X_3657066_SNP [dm3] X_3763033_SNP [dm6]	G	T	1.154e^-4	1	INTRON tlk
3L	10600572	3L_10600572_SNP [dm3] 3L_10607472_SNP [dm6]	C	A	1.155e^-4	1	INTERGENIC
3L	6520168	3L_6520168_DEL [dm3] 3L_6527068_DEL [dm6]	GTCTGCAG	G	1.160e^-4	1	INTRON sfl
2L	7355777	2L_7355777_SNP [dm3] 2L_7355777_SNP [dm6]	T	G	1.161e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	8590173	2R_8590173_SNP [dm3] 2R_12702668_SNP [dm6]	A	C	1.161e^-4	1	INTERGENIC
3L	6520127	3L_6520127_DEL [dm3] 3L_6527027_DEL [dm6]	TGGA	T	1.164e^-4	1	INTRON sfl
2L	15610866	2L_15610866_INS [dm3] 2L_15610866_INS [dm6]	A	AGT	1.171e^-4	1	UTR_3_PRIME CG15255 DOWNSTREAM CR44865
X	10861919	X_10861919_SNP [dm3] X_10967886_SNP [dm6]	A	G	1.175e^-4	1	UTR_3_PRIME CG42339 UPSTREAM C901	TF binding site mE1_TFBS_inv
2L	5052607	2L_5052607_SNP [dm3] 2L_5052607_SNP [dm6]	C	T	1.179e^-4	1	UPSTREAM CG14040 INTRON eIF-3p40	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13090813	3R_13090813_SNP [dm3] 3R_17265091_SNP [dm6]	T	C	1.180e^-4	1	UPSTREAM CG44257 & 1 other INTERGENIC
3L	10600577	3L_10600577_SNP [dm3] 3L_10607477_SNP [dm6]	T	A	1.183e^-4	1	INTERGENIC
2L	12672099	2L_12672099_SNP [dm3] 2L_12672099_SNP [dm6]	A	G	1.183e^-4	1	INTRON pdm2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	6520153	3L_6520153_SNP [dm3] 3L_6527053_SNP [dm6]	T	A	1.204e^-4	1	INTRON sfl
2L	8592775	2L_8592775_SNP [dm3] 2L_8592775_SNP [dm6]	A	C	1.210e^-4	1	INTRON Sema-1a & 1 other	TF binding site mE1_TFBS_HSA
2R	12450490	2R_12450490_SNP [dm3] 2R_16562985_SNP [dm6]	A	G	1.237e^-4	1	INTRON DAT
X	14012389	X_14012389_SNP [dm3] X_14118356_SNP [dm6]	T	A	1.256e^-4	1	UPSTREAM tRNA:S7:12Eg INTERGENIC	TF binding site mE1_TFBS_HSA
2R	20222315	2R_20222315_DEL [dm3] 2R_24334792_DEL [dm6]	TT	T	1.270e^-4	1	UPSTREAM slbo EXON CR44282	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	8234156	X_8234156_SNP [dm3] X_8340123_SNP [dm6]	T	C	1.274e^-4	1	INTRON nAChRalpha3
2R	17139392	2R_17139392_SNP [dm3] 2R_21251887_SNP [dm6]	G	C	1.280e^-4	1	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_Trl
2L	10190069	2L_10190069_SNP [dm3] 2L_10190069_SNP [dm6]	G	C	1.282e^-4	1	SYNONYMOUS_CODING CG31874 INTRON Sur	TF binding site mE1_TFBS_cad
3L	3532171	3L_3532171_SNP [dm3] 3L_3532171_SNP [dm6]	A	G	1.292e^-4	1	INTRON Eip63E
2L	16300085	2L_16300085_SNP [dm3] 2L_16300085_SNP [dm6]	C	T	1.292e^-4	1	UPSTREAM CG17328 & 1 other INTRON CG17328	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	9774177	2R_9774177_SNP [dm3] 2R_13886672_SNP [dm6]	G	A	1.299e^-4	1	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
X	15517187	X_15517187_SNP [dm3] X_15623154_SNP [dm6]	A	G	1.305e^-4	1	INTRON sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16595165	2R_16595165_SNP [dm3] 2R_20707660_SNP [dm6]	C	A	1.312e^-4	1	INTRON dpr
3L	477947	3L_477947_SNP [dm3] 3L_477947_SNP [dm6]	G	T	1.313e^-4	1	INTRON klar
X	16635286	X_16635286_SNP [dm3] X_16741253_SNP [dm6]	A	G	1.313e^-4	1	SYNONYMOUS_CODING CG32568 INTRON CG9634
3L	478145	3L_478145_DEL [dm3] 3L_478145_DEL [dm6]	GT	G	1.317e^-4	1	INTRON klar	TF binding site BDTNP1_TFBS_da
2L	12136622	2L_12136622_DEL [dm3] 2L_12136622_DEL [dm6]	ACGAA	T	1.317e^-4	1	INTERGENIC
3L	867744	3L_867744_SNP [dm3] 3L_867744_SNP [dm6]	T	G	1.322e^-4	1	INTRON CG12502	TF binding site mE1_TFBS_chinmo
X	8234115	X_8234115_SNP [dm3] X_8340082_SNP [dm6]	G	T	1.329e^-4	1	INTRON nAChRalpha3
2R	5937695	2R_5937695_SNP [dm3] 2R_10050190_SNP [dm6]	G	A	1.362e^-4	1	UPSTREAM CG44296 DOWNSTREAM sel & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8550750	2R_8550750_SNP [dm3] 2R_12663245_SNP [dm6]	A	G	1.368e^-4	1	UPSTREAM nemy INTRON nemy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16595296	2R_16595296_SNP [dm3] 2R_20707791_SNP [dm6]	A	G	1.374e^-4	1	INTRON dpr
2L	5623957	2L_5623957_SNP [dm3] 2L_5623957_SNP [dm6]	A	G	1.376e^-4	1	UPSTREAM Cyp6a16 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	6520190	3L_6520190_SNP [dm3] 3L_6527090_SNP [dm6]	T	C	1.383e^-4	1	INTRON sfl
X	20836970	X_20836970_SNP [dm3] X_20965943_SNP [dm6]	C	T	1.392e^-4	1	UPSTREAM CG1304 INTERGENIC
3L	7135221	3L_7135221_SNP [dm3] 3L_7142121_SNP [dm6]	C	T	1.416e^-4	1	DOWNSTREAM corn INTRON melt
2R	8550751	2R_8550751_SNP [dm3] 2R_12663246_SNP [dm6]	A	G	1.420e^-4	1	UPSTREAM nemy INTRON nemy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19822205	2L_19822205_SNP [dm3] 2L_19822205_SNP [dm6]	A	C	1.425e^-4	1	INTRON sick
2L	1730031	2L_1730031_SNP [dm3] 2L_1730031_SNP [dm6]	C	G	1.427e^-4	1	SYNONYMOUS_CODING CG31937 UPSTREAM Eno DOWNSTREAM Rrp40	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6740984	3L_6740984_SNP [dm3] 3L_6747884_SNP [dm6]	C	T	1.427e^-4	1	SYNONYMOUS_CODING velo UPSTREAM velo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
3R	14282482	3R_14282482_SNP [dm3] 3R_18456760_SNP [dm6]	G	C	1.430e^-4	1	INTRON fru
X	16643544	X_16643544_SNP [dm3] X_16749511_SNP [dm6]	A	G	1.431e^-4	1	INTRON CG9634	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20838436	3R_20838436_SNP [dm3] 3R_25012714_SNP [dm6]	G	A	1.438e^-4	1	INTRON tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12672049	2L_12672049_DEL [dm3] 2L_12672049_DEL [dm6]	GCTTACATATAACAA...	G	1.449e^-4	1	INTRON pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
X	3659306	X_3659306_SNP [dm3] X_3765273_SNP [dm6]	A	G	1.454e^-4	1	INTRON tlk
2L	4859870	2L_4859870_SNP [dm3] 2L_4859870_SNP [dm6]	G	A	1.457e^-4	1	INTRON pog
2R	8590205	2R_8590205_SNP [dm3] 2R_12702700_SNP [dm6]	A	G	1.462e^-4	1	INTERGENIC
3L	867754	3L_867754_SNP [dm3] 3L_867754_SNP [dm6]	C	T	1.471e^-4	1	INTRON CG12502	TF binding site mE1_TFBS_chinmo
X	21085928	X_21085928_SNP [dm3] X_21214901_SNP [dm6]	C	G	1.471e^-4	1	INTRON CG32521	TF binding site mE1_TFBS_chinmo
2L	13161816	2L_13161816_SNP [dm3] 2L_13161816_SNP [dm6]	A	G	1.479e^-4	1	SYNONYMOUS_CODING CG5204	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9536310	3L_9536310_SNP [dm3] 3L_9543210_SNP [dm6]	C	T	1.480e^-4	1	NON_SYNONYMOUS_CODING Ir67a
X	20836785	X_20836785_SNP [dm3] X_20965758_SNP [dm6]	T	G	1.493e^-4	1	UPSTREAM CG1304 INTERGENIC
X	4730572	X_4730572_SNP [dm3] X_4836539_SNP [dm6]	T	A	1.495e^-4	1	INTERGENIC
3L	2961063	3L_2961063_SNP [dm3] 3L_2961063_SNP [dm6]	T	C	1.526e^-4	1	UPSTREAM Or63a & 1 other INTERGENIC
2L	16522255	2L_16522255_SNP [dm3] 2L_16522255_SNP [dm6]	A	C	1.553e^-4	1	INTRON CG5953	TF binding site BDTNP1_TFBS_dl
2L	4358026	2L_4358026_SNP [dm3] 2L_4358026_SNP [dm6]	G	A	1.559e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cnc mE1_TFBS_HSA
2R	19670857	2R_19670857_SNP [dm3] 2R_23783334_SNP [dm6]	G	A	1.562e^-4	1	INTRON CG9850
X	3643947	X_3643947_SNP [dm3] X_3749914_SNP [dm6]	C	T	1.568e^-4	1	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4735268	X_4735268_INS [dm3] X_4841235_INS [dm6]	A	ACA	1.577e^-4	1	UTR_5_PRIME CG42594	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14372764	2L_14372764_SNP [dm3] 2L_14372764_SNP [dm6]	T	C	1.579e^-4	1	INTERGENIC
2L	6266570	2L_6266570_SNP [dm3] 2L_6266570_SNP [dm6]	A	G	1.585e^-4	1	INTRON Ddr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16012013	X_16012013_SNP [dm3] X_16117980_SNP [dm6]	C	T	1.596e^-4	1	DOWNSTREAM disco-r INTERGENIC
2L	1633601	2L_1633601_INS [dm3] 2L_1633601_INS [dm6]	A	AT	1.597e^-4	1	INTERGENIC
3L	6520135	3L_6520135_SNP [dm3] 3L_6527035_SNP [dm6]	T	C	1.598e^-4	1	INTRON sfl
2L	16501973	2L_16501973_SNP [dm3] 2L_16501973_SNP [dm6]	C	T	1.620e^-4	1	START_GAINED Tpr2 UTR_5_PRIME Tpr2 INTRON Tpr2
X	8235270	X_8235270_SNP [dm3] X_8341237_SNP [dm6]	C	T	1.629e^-4	1	INTRON nAChRalpha3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27164956	3R_27164956_SNP [dm3] 3R_31339234_SNP [dm6]	T	C	1.631e^-4	1	INTRON CG34347	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1865339	3L_1865339_SNP [dm3] 3L_1865339_SNP [dm6]	T	A	1.653e^-4	1	UPSTREAM CG12025 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	11422772	2L_11422772_SNP [dm3] 2L_11422772_SNP [dm6]	G	A	1.662e^-4	1	INTERGENIC
2R	15289081	2R_15289081_SNP [dm3] 2R_19401576_SNP [dm6]	A	G	1.664e^-4	1	DOWNSTREAM hts & 1 other INTRON hts
2R	19652400	2R_19652400_MNP [dm3] 2R_23764877_MNP [dm6]	AGCT	TAGC	1.670e^-4	1	INTRON CG9850
2L	1330060	2L_1330060_SNP [dm3] 2L_1330060_SNP [dm6]	A	G	1.672e^-4	1	DOWNSTREAM a5 INTERGENIC
2R	17726627	2R_17726627_SNP [dm3] 2R_21839122_SNP [dm6]	G	A	1.676e^-4	1	UPSTREAM CG4372 INTERGENIC
3R	24895891	3R_24895891_SNP [dm3] 3R_29070169_SNP [dm6]	T	C	1.694e^-4	1	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	867738	3L_867738_SNP [dm3] 3L_867738_SNP [dm6]	A	T	1.707e^-4	1	INTRON CG12502	TF binding site mE1_TFBS_chinmo
2R	19652413	2R_19652413_SNP [dm3] 2R_23764890_SNP [dm6]	G	A	1.707e^-4	1	INTRON CG9850
2R	9774120	2R_9774120_SNP [dm3] 2R_13886615_SNP [dm6]	G	T	1.707e^-4	1	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
X	12608603	X_12608603_SNP [dm3] X_12714570_SNP [dm6]	A	T	1.711e^-4	1	SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad
X	16457291	X_16457291_SNP [dm3] X_16563258_SNP [dm6]	A	G	1.714e^-4	1	UTR_3_PRIME CanA-14F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16508055	2L_16508055_SNP [dm3] 2L_16508055_SNP [dm6]	T	C	1.724e^-4	1	DOWNSTREAM CG5953 & 1 other INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	21384782	3R_21384782_SNP [dm3] 3R_25559060_SNP [dm6]	C	T	1.732e^-4	1	INTRON msi
X	16219224	X_16219224_SNP [dm3] X_16325191_SNP [dm6]	T	A	1.746e^-4	1	UPSTREAM CalpC DOWNSTREAM CG32579 INTRON CG32579
2L	13555233	2L_13555233_SNP [dm3] 2L_13555233_SNP [dm6]	A	T	1.750e^-4	1	INTRON kuz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11386624	3L_11386624_SNP [dm3] 3L_11393524_SNP [dm6]	A	G	1.750e^-4	1	INTERGENIC
2R	16732349	2R_16732349_SNP [dm3] 2R_20844844_SNP [dm6]	A	T	1.756e^-4	1	INTERGENIC
2R	17168104	2R_17168104_SNP [dm3] 2R_21280599_SNP [dm6]	G	A	1.767e^-4	1	UTR_3_PRIME Rgk3 DOWNSTREAM CG34203 & 1 other
X	20329220	X_20329220_SNP [dm3] X_20458193_SNP [dm6]	A	C	1.774e^-4	1	INTRON CG32506
X	14482626	X_14482626_DEL [dm3] X_14588593_DEL [dm6]	GG	G	1.775e^-4	1	INTRON CG9413
3L	1865277	3L_1865277_SNP [dm3] 3L_1865277_SNP [dm6]	T	A	1.779e^-4	1	UPSTREAM CG12025 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	4356408	2L_4356408_SNP [dm3] 2L_4356408_SNP [dm6]	G	C	1.792e^-4	1	INTERGENIC
X	14191599	X_14191599_DEL [dm3] X_14297566_DEL [dm6]	TT	T	1.799e^-4	1	INTERGENIC
3L	6520120	3L_6520120_DEL [dm3] 3L_6527020_DEL [dm6]	CCTT	C	1.801e^-4	1	INTRON sfl
2R	14985992	2R_14985992_SNP [dm3] 2R_19098487_SNP [dm6]	G	C	1.809e^-4	1	INTRON 5-HT1A
2L	4356410	2L_4356410_SNP [dm3] 2L_4356410_SNP [dm6]	C	T	1.819e^-4	1	INTERGENIC
2R	4637086	2R_4637086_SNP [dm3] 2R_8749581_SNP [dm6]	T	A	1.819e^-4	1	INTRON CG8740
3L	10211113	3L_10211113_SNP [dm3] 3L_10218013_SNP [dm6]	A	T	1.836e^-4	1	DOWNSTREAM CG32055 INTERGENIC
3R	1773882	3R_1773882_SNP [dm3] 3R_5948160_SNP [dm6]	C	T	1.838e^-4	1	INTRON CG34113
2L	12672161	2L_12672161_SNP [dm3] 2L_12672161_SNP [dm6]	C	T	1.841e^-4	1	INTRON pdm2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	885348	2L_885348_SNP [dm3] 2L_885348_SNP [dm6]	T	C	1.841e^-4	1	UPSTREAM CG15824 INTERGENIC
2L	5052609	2L_5052609_SNP [dm3] 2L_5052609_SNP [dm6]	C	G	1.850e^-4	1	UPSTREAM CG14040 INTRON eIF-3p40	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5101543	3L_5101543_SNP [dm3] 3L_5101543_SNP [dm6]	C	T	1.854e^-4	1	INTERGENIC
2R	15289869	2R_15289869_SNP [dm3] 2R_19402364_SNP [dm6]	C	T	1.855e^-4	1	NON_SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16986459	2R_16986459_SNP [dm3] 2R_21098954_SNP [dm6]	G	A	1.859e^-4	1	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo
2L	16476541	2L_16476541_SNP [dm3] 2L_16476541_SNP [dm6]	T	C	1.862e^-4	1	INTRON dac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5990394	X_5990394_SNP [dm3] X_6096361_SNP [dm6]	G	A	1.862e^-4	1	SYNONYMOUS_CODING Nep1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	20401848	X_20401848_SNP [dm3] X_20530821_SNP [dm6]	C	T	1.880e^-4	1	INTERGENIC
3L	6520178	3L_6520178_SNP [dm3] 3L_6527078_SNP [dm6]	T	C	1.883e^-4	1	INTRON sfl
X	16643706	X_16643706_SNP [dm3] X_16749673_SNP [dm6]	A	G	1.886e^-4	1	INTRON CG9634	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1330095	2L_1330095_SNP [dm3] 2L_1330095_SNP [dm6]	C	A	1.895e^-4	1	DOWNSTREAM a5 INTERGENIC
3L	10600567	3L_10600567_SNP [dm3] 3L_10607467_SNP [dm6]	A	G	1.901e^-4	1	INTERGENIC
X	8234120	X_8234120_SNP [dm3] X_8340087_SNP [dm6]	A	G	1.903e^-4	1	INTRON nAChRalpha3
3L	2091145	3L_2091145_SNP [dm3] 3L_2091145_SNP [dm6]	A	G	1.912e^-4	1	INTRON sls	TF binding site mE1_TFBS_HSA
2R	10018197	2R_10018197_SNP [dm3] 2R_14130692_SNP [dm6]	A	T	1.926e^-4	1	INTRON Prosap
3L	1979557	3L_1979557_SNP [dm3] 3L_1979557_SNP [dm6]	T	C	1.931e^-4	1	INTERGENIC
X	5531466	X_5531466_SNP [dm3] X_5637433_SNP [dm6]	T	A	1.936e^-4	1	INTRON CG42492	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10668465	2R_10668465_SNP [dm3] 2R_14780960_SNP [dm6]	T	C	1.941e^-4	1	INTRON kn
2R	19113870	2R_19113870_INS [dm3] 2R_23226347_INS [dm6]	C	CACC	1.948e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	2846128	3R_2846128_SNP [dm3] 3R_7020406_SNP [dm6]	T	G	1.962e^-4	1	INTERGENIC
3L	2961022	3L_2961022_SNP [dm3] 3L_2961022_SNP [dm6]	C	T	1.963e^-4	1	UTR_5_PRIME CG34025 UPSTREAM Or63a
2L	10097057	2L_10097057_SNP [dm3] 2L_10097057_SNP [dm6]	C	T	1.970e^-4	1	SPLICE_SITE_REGION CG44153 INTRON CG34109 & 1 other
2R	19670855	2R_19670855_SNP [dm3] 2R_23783332_SNP [dm6]	T	C	1.975e^-4	1	INTRON CG9850
X	20958701	X_20958701_INS [dm3] X_21087674_INS [dm6]	T	TAA	1.983e^-4	1	INTERGENIC
2R	8552562	2R_8552562_SNP [dm3] 2R_12665057_SNP [dm6]	G	T	1.995e^-4	1	UTR_5_PRIME nemy INTRON nemy
3L	12489466	3L_12489466_SNP [dm3] 3L_12496366_SNP [dm6]	T	G	2.000e^-4	1	INTRON CG10657
X	13876354	X_13876354_SNP [dm3] X_13982321_SNP [dm6]	A	G	2.002e^-4	1	INTRON mamo
3L	12327624	3L_12327624_SNP [dm3] 3L_12334524_SNP [dm6]	T	C	2.025e^-4	1	SYNONYMOUS_CODING CG32105	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3715081	2L_3715081_SNP [dm3] 2L_3715081_SNP [dm6]	C	T	2.026e^-4	1	SYNONYMOUS_CODING CG2818	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12513576	2R_12513576_SNP [dm3] 2R_16626071_SNP [dm6]	T	A	2.035e^-4	1	UTR_3_PRIME Alk DOWNSTREAM Alk
3R	6994382	3R_6994382_SNP [dm3] 3R_11168660_SNP [dm6]	A	G	2.043e^-4	1	SYNONYMOUS_CODING Ugt35b UPSTREAM Ugt86De	TF binding site mE1_TFBS_inv
2R	15426802	2R_15426802_SNP [dm3] 2R_19539297_SNP [dm6]	G	T	2.047e^-4	1	INTRON sm
2L	3831043	2L_3831043_SNP [dm3] 2L_3831043_SNP [dm6]	C	A	2.050e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2975373	3L_2975373_SNP [dm3] 3L_2975373_SNP [dm6]	C	T	2.058e^-4	1	DOWNSTREAM CR44530 INTERGENIC
2L	7232835	2L_7232835_SNP [dm3] 2L_7232835_SNP [dm6]	C	A	2.060e^-4	1	UPSTREAM CG43800 INTRON Ndae1
2R	17159616	2R_17159616_SNP [dm3] 2R_21272111_SNP [dm6]	G	T	2.065e^-4	1	INTRON Rgk3
2L	3744841	2L_3744841_SNP [dm3] 2L_3744841_SNP [dm6]	A	G	2.070e^-4	1	UPSTREAM CG10019 INTRON CG10019
X	3657060	X_3657060_SNP [dm3] X_3763027_SNP [dm6]	T	C	2.072e^-4	1	INTRON tlk
2R	18586414	2R_18586414_SNP [dm3] 2R_22698909_SNP [dm6]	A	G	2.092e^-4	1	SPLICE_SITE_REGION robo INTRON robo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8907750	2R_8907750_SNP [dm3] 2R_13020245_SNP [dm6]	T	C	2.094e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	1633608	2L_1633608_SNP [dm3] 2L_1633608_SNP [dm6]	A	C	2.107e^-4	1	INTERGENIC
3R	5143693	3R_5143693_SNP [dm3] 3R_9317971_SNP [dm6]	C	T	2.108e^-4	1	INTRON CG8861
2R	17031454	2R_17031454_SNP [dm3] 2R_21143949_SNP [dm6]	T	C	2.136e^-4	1	SYNONYMOUS_CODING Xbp1 DOWNSTREAM CG9406	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	13918501	3R_13918501_SNP [dm3] 3R_18092779_SNP [dm6]	T	C	2.145e^-4	1	INTRON sr	TF binding site BDTNP1_TFBS_twi
X	4290948	X_4290948_SNP [dm3] X_4396915_SNP [dm6]	T	C	2.148e^-4	1	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16149045	X_16149045_SNP [dm3] X_16255012_SNP [dm6]	C	A	2.160e^-4	1	UPSTREAM snRNA:U5:14B DOWNSTREAM snRNA:U2:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2599878	X_2599878_SNP [dm3] X_2705845_SNP [dm6]	T	A	2.180e^-4	1	SYNONYMOUS_CODING eIF2B-beta DOWNSTREAM CG2680	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12157880	2L_12157880_SNP [dm3] 2L_12157880_SNP [dm6]	C	A	2.187e^-4	1	INTRON CG31760
3L	478045	3L_478045_SNP [dm3] 3L_478045_SNP [dm6]	A	T	2.194e^-4	1	INTRON klar
X	5011846	X_5011846_SNP [dm3] X_5117813_SNP [dm6]	T	A	2.210e^-4	1	INTRON rg & 1 other
3L	2735388	3L_2735388_SNP [dm3] 3L_2735388_SNP [dm6]	C	T	2.214e^-4	1	UPSTREAM Mrtf INTRON Mrtf
3R	4494482	3R_4494482_SNP [dm3] 3R_8668760_SNP [dm6]	C	A	2.225e^-4	1	UPSTREAM tRNA:Y1:85Ac & 2 others DOWNSTREAM CG8032 & 1 other INTRON CG8036	TF binding site BDTNP1_TFBS_dl
3R	14026101	3R_14026101_SNP [dm3] 3R_18200379_SNP [dm6]	A	T	2.226e^-4	1	START_GAINED CG7985 UTR_5_PRIME CG7985 UPSTREAM Ssdp INTRON CG7985	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
3L	8735385	3L_8735385_SNP [dm3] 3L_8742285_SNP [dm6]	G	T	2.227e^-4	1	INTRON Prm	TF binding site BDTNP1_TFBS_twi
2L	2474412	2L_2474412_SNP [dm3] 2L_2474412_SNP [dm6]	G	T	2.231e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	11829489	2R_11829489_SNP [dm3] 2R_15941984_SNP [dm6]	C	A	2.233e^-4	1	UPSTREAM CG8299 & 1 other INTERGENIC
2R	15291764	2R_15291764_SNP [dm3] 2R_19404259_SNP [dm6]	A	G	2.251e^-4	1	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4356531	2L_4356531_DEL [dm3] 2L_4356531_DEL [dm6]	TTGTTACCATGT...	T	2.281e^-4	1	INTERGENIC
X	16219227	X_16219227_SNP [dm3] X_16325194_SNP [dm6]	T	C	2.301e^-4	1	UPSTREAM CalpC DOWNSTREAM CG32579 INTRON CG32579
3L	7900195	3L_7900195_SNP [dm3] 3L_7907095_SNP [dm6]	C	A	2.302e^-4	1	INTRON pbl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3865251	3L_3865251_SNP [dm3] 3L_3865251_SNP [dm6]	G	A	2.303e^-4	1	UPSTREAM CR45379 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9582546	2L_9582546_SNP [dm3] 2L_9582546_SNP [dm6]	T	A	2.305e^-4	1	UPSTREAM gcm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3R	26780583	3R_26780583_SNP [dm3] 3R_30954861_SNP [dm6]	G	A	2.317e^-4	1	INTERGENIC
2L	12157916	2L_12157916_SNP [dm3] 2L_12157916_SNP [dm6]	G	A	2.319e^-4	1	INTRON CG31760
2R	12513637	2R_12513637_SNP [dm3] 2R_16626132_SNP [dm6]	A	T	2.335e^-4	1	UTR_3_PRIME Alk
2R	3618055	2R_3618055_SNP [dm3] 2R_7730550_SNP [dm6]	T	C	2.339e^-4	1	INTRON CG18812
2R	8907984	2R_8907984_SNP [dm3] 2R_13020479_SNP [dm6]	G	T	2.339e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17159639	2R_17159639_SNP [dm3] 2R_21272134_SNP [dm6]	C	A	2.341e^-4	1	INTRON Rgk3
X	15142495	X_15142495_SNP [dm3] X_15248462_SNP [dm6]	A	C	2.351e^-4	1	INTERGENIC
2L	6508912	2L_6508912_SNP [dm3] 2L_6508912_SNP [dm6]	T	A	2.354e^-4	1	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb
3R	10135587	3R_10135587_SNP [dm3] 3R_14309865_SNP [dm6]	C	A	2.361e^-4	1	UTR_3_PRIME RpII15 UPSTREAM CG31321 DOWNSTREAM RpII15
2R	17031579	2R_17031579_SNP [dm3] 2R_21144074_SNP [dm6]	C	G	2.369e^-4	1	SYNONYMOUS_CODING Xbp1 DOWNSTREAM CG9406	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	17160710	2R_17160710_SNP [dm3] 2R_21273205_SNP [dm6]	A	G	2.371e^-4	1	INTRON Rgk3
3R	24895890	3R_24895890_SNP [dm3] 3R_29070168_SNP [dm6]	T	C	2.376e^-4	1	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	20218512	2R_20218512_SNP [dm3] 2R_24330989_SNP [dm6]	C	T	2.378e^-4	1	DOWNSTREAM CR44810 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19652340	2R_19652340_SNP [dm3] 2R_23764817_SNP [dm6]	T	A	2.379e^-4	1	INTRON CG9850
2R	16595628	2R_16595628_SNP [dm3] 2R_20708123_SNP [dm6]	A	T	2.394e^-4	1	INTRON dpr	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6286432	2L_6286432_SNP [dm3] 2L_6286432_SNP [dm6]	C	T	2.396e^-4	1	INTRON Ddr
2L	8283163	2L_8283163_SNP [dm3] 2L_8283163_SNP [dm6]	G	T	2.399e^-4	1	INTRON Btk29A
2L	4858504	2L_4858504_SNP [dm3] 2L_4858504_SNP [dm6]	A	T	2.406e^-4	1	INTRON pog
2R	9774144	2R_9774144_SNP [dm3] 2R_13886639_SNP [dm6]	A	G	2.413e^-4	1	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
2L	1693273	2L_1693273_SNP [dm3] 2L_1693273_SNP [dm6]	T	G	2.420e^-4	1	INTRON chinmo
X	8234100	X_8234100_SNP [dm3] X_8340067_SNP [dm6]	G	C	2.436e^-4	1	INTRON nAChRalpha3
2R	8550733	2R_8550733_SNP [dm3] 2R_12663228_SNP [dm6]	A	G	2.440e^-4	1	UPSTREAM nemy INTRON nemy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16595525	2R_16595525_DEL [dm3] 2R_20708020_DEL [dm6]	AATATAATAATCAGATGGA...	A	2.444e^-4	1	INTRON dpr	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	17109308	3R_17109308_SNP [dm3] 3R_21283586_SNP [dm6]	G	A	2.460e^-4	1	SPLICE_SITE_REGION CG17298 SYNONYMOUS_CODING CG17298 INTRON SIFaR	TF binding site mE1_TFBS_cad
X	4860082	X_4860082_SNP [dm3] X_4966049_SNP [dm6]	T	C	2.462e^-4	1	INTRON CR44833	regulatory region REDfly_CRMs
2R	11397646	2R_11397646_SNP [dm3] 2R_15510141_SNP [dm6]	C	T	2.471e^-4	1	INTERGENIC
2R	20582041	2R_20582041_SNP [dm3] 2R_24694518_SNP [dm6]	T	C	2.472e^-4	1	UPSTREAM ST6Gal DOWNSTREAM Mid1 INTERGENIC
2R	13935651	2R_13935651_SNP [dm3] 2R_18048146_SNP [dm6]	T	C	2.475e^-4	1	SYNONYMOUS_CODING CG34005 UPSTREAM CG5767 DOWNSTREAM CG14495	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	16501921	2L_16501921_SNP [dm3] 2L_16501921_SNP [dm6]	T	C	2.485e^-4	1	UTR_5_PRIME Tpr2 INTRON Tpr2
2L	3144680	2L_3144680_SNP [dm3] 2L_3144680_SNP [dm6]	C	T	2.490e^-4	1	UTR_5_PRIME toc DOWNSTREAM CG12400	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	12591606	3L_12591606_SNP [dm3] 3L_12598506_SNP [dm6]	C	T	2.491e^-4	1	INTERGENIC
X	20957165	X_20957165_SNP [dm3] X_21086138_SNP [dm6]	A	G	2.495e^-4	1	INTERGENIC
2R	14638492	2R_14638492_SNP [dm3] 2R_18750987_SNP [dm6]	G	C	2.499e^-4	1	NON_SYNONYMOUS_CODING Hs3st-A	TF binding site mE1_TFBS_chinmo
2R	8590323	2R_8590323_SNP [dm3] 2R_12702818_SNP [dm6]	T	C	2.500e^-4	1	INTERGENIC
3L	12476637	3L_12476637_SNP [dm3] 3L_12483537_SNP [dm6]	A	C	2.512e^-4	1	INTRON CG10663 & 1 other
X	5989809	X_5989809_SNP [dm3] X_6095776_SNP [dm6]	G	T	2.514e^-4	1	INTRON Nep1
2L	9283967	2L_9283967_SNP [dm3] 2L_9283967_SNP [dm6]	C	T	2.515e^-4	1	INTRON Ggamma30A
3R	19088192	3R_19088192_SNP [dm3] 3R_23262470_SNP [dm6]	C	T	2.517e^-4	1	UTR_3_PRIME orb
3L	8999751	3L_8999751_SNP [dm3] 3L_9006651_SNP [dm6]	G	A	2.518e^-4	1	SYNONYMOUS_CODING Doc3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17139145	2R_17139145_SNP [dm3] 2R_21251640_SNP [dm6]	G	T	2.525e^-4	1	UPSTREAM ASPP INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
3R	26625491	3R_26625491_SNP [dm3] 3R_30799769_SNP [dm6]	T	G	2.525e^-4	1	INTRON wts
2L	6266835	2L_6266835_INS [dm3] 2L_6266835_INS [dm6]	T	TT	2.535e^-4	1	INTRON Ddr
X	13826270	X_13826270_SNP [dm3] X_13932237_SNP [dm6]	C	T	2.537e^-4	1	INTRON mamo
2R	8142407	2R_8142407_SNP [dm3] 2R_12254902_SNP [dm6]	C	T	2.538e^-4	1	SYNONYMOUS_CODING CG13168
3R	9738831	3R_9738831_SNP [dm3] 3R_13913109_SNP [dm6]	C	T	2.546e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
X	10741685	X_10741685_SNP [dm3] X_10847652_SNP [dm6]	C	A	2.547e^-4	1	UPSTREAM sbr INTRON CG17333	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
X	2600173	X_2600173_SNP [dm3] X_2706140_SNP [dm6]	T	C	2.557e^-4	1	UTR_3_PRIME eIF2B-beta DOWNSTREAM CG2680	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19652361	2R_19652361_SNP [dm3] 2R_23764838_SNP [dm6]	T	C	2.589e^-4	1	INTRON CG9850
2R	18946829	2R_18946829_SNP [dm3] 2R_23059306_SNP [dm6]	G	A	2.611e^-4	1	DOWNSTREAM CG44253 INTRON CG44252
2L	7808231	2L_7808231_SNP [dm3] 2L_7808231_SNP [dm6]	A	G	2.615e^-4	1	INTRON cdc14	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4730630	X_4730630_SNP [dm3] X_4836597_SNP [dm6]	A	C	2.620e^-4	1	INTERGENIC
3L	9507232	3L_9507232_SNP [dm3] 3L_9514132_SNP [dm6]	A	G	2.629e^-4	1	UTR_3_PRIME CG33700 UPSTREAM CG33702 & 1 other
X	20241013	X_20241013_SNP [dm3] X_20369986_SNP [dm6]	G	C	2.637e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	478096	3L_478096_SNP [dm3] 3L_478096_SNP [dm6]	G	A	2.646e^-4	1	INTRON klar
2R	17466443	2R_17466443_SNP [dm3] 2R_21578938_SNP [dm6]	A	T	2.659e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9882608	3L_9882608_SNP [dm3] 3L_9889508_SNP [dm6]	T	C	2.669e^-4	1	SYNONYMOUS_CODING CalpB UPSTREAM Taf2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6520117	3L_6520117_SNP [dm3] 3L_6527017_SNP [dm6]	G	T	2.670e^-4	1	INTRON sfl
X	3657220	X_3657220_DEL [dm3] X_3763187_DEL [dm6]	GTATG	G	2.678e^-4	1	INTRON tlk
X	3655681	X_3655681_SNP [dm3] X_3761648_SNP [dm6]	G	A	2.694e^-4	1	INTRON tlk	TF binding site BDTNP1_TFBS_dl
X	5485967	X_5485967_SNP [dm3] X_5591934_SNP [dm6]	A	T	2.697e^-4	1	INTERGENIC
3L	1870358	3L_1870358_SNP [dm3] 3L_1870358_SNP [dm6]	G	A	2.705e^-4	1	SYNONYMOUS_CODING CG13924 DOWNSTREAM CG12025	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1862447	3L_1862447_SNP [dm3] 3L_1862447_SNP [dm6]	T	C	2.713e^-4	1	UPSTREAM R DOWNSTREAM HBS1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	8716998	X_8716998_SNP [dm3] X_8822965_SNP [dm6]	T	G	2.725e^-4	1	INTERGENIC
2L	12136407	2L_12136407_SNP [dm3] 2L_12136407_SNP [dm6]	C	A	2.730e^-4	1	INTERGENIC
3L	1528940	3L_1528940_SNP [dm3] 3L_1528940_SNP [dm6]	T	C	2.742e^-4	1	DOWNSTREAM Ir62a INTRON CG12090
X	10142017	X_10142017_SNP [dm3] X_10247984_SNP [dm6]	G	A	2.746e^-4	1	INTRON Hk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4092527	3L_4092527_SNP [dm3] 3L_4092527_SNP [dm6]	T	C	2.765e^-4	1	UTR_3_PRIME CG14989 UPSTREAM CG14990	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6276869	3R_6276869_SNP [dm3] 3R_10451147_SNP [dm6]	G	T	2.779e^-4	1	INTERGENIC
2R	17160711	2R_17160711_SNP [dm3] 2R_21273206_SNP [dm6]	T	A	2.793e^-4	1	INTRON Rgk3
3L	11424981	3L_11424981_SNP [dm3] 3L_11431881_SNP [dm6]	C	G	2.793e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	4280585	2L_4280585_SNP [dm3] 2L_4280585_SNP [dm6]	G	A	2.797e^-4	1	INTRON Art2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6323730	2L_6323730_SNP [dm3] 2L_6323730_SNP [dm6]	A	G	2.805e^-4	1	UPSTREAM PDZ-GEF DOWNSTREAM Ddr INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	5109893	X_5109893_SNP [dm3] X_5215860_SNP [dm6]	C	G	2.808e^-4	1	INTRON CG15465 & 1 other
2L	12136429	2L_12136429_SNP [dm3] 2L_12136429_SNP [dm6]	C	T	2.811e^-4	1	INTERGENIC
2L	12022057	2L_12022057_SNP [dm3] 2L_12022057_SNP [dm6]	T	C	2.815e^-4	1	INTERGENIC
2L	17367055	2L_17367055_SNP [dm3] 2L_17367055_SNP [dm6]	A	G	2.821e^-4	1	DOWNSTREAM Lrch INTERGENIC
2R	5254939	2R_5254939_SNP [dm3] 2R_9367434_SNP [dm6]	A	C	2.823e^-4	1	INTRON CG13954
X	3444103	X_3444103_SNP [dm3] X_3550070_SNP [dm6]	A	T	2.823e^-4	1	INTRON CG32791
X	18930547	X_18930547_SNP [dm3] X_19036514_SNP [dm6]	C	T	2.827e^-4	1	INTERGENIC
3L	1690176	3L_1690176_SNP [dm3] 3L_1690176_SNP [dm6]	C	T	2.832e^-4	1	INTRON CG7991
X	13826314	X_13826314_SNP [dm3] X_13932281_SNP [dm6]	C	T	2.836e^-4	1	INTRON mamo
2L	6258852	2L_6258852_SNP [dm3] 2L_6258852_SNP [dm6]	C	A	2.841e^-4	1	INTRON Ddr
3L	8319775	3L_8319775_SNP [dm3] 3L_8326675_SNP [dm6]	G	A	2.843e^-4	1	INTRON CG34461	TF binding site mE1_TFBS_cad
X	14492668	X_14492668_DEL [dm3] X_14598635_DEL [dm6]	GG	G	2.844e^-4	1	INTRON CG9413
X	13860783	X_13860783_SNP [dm3] X_13966750_SNP [dm6]	C	A	2.847e^-4	1	INTRON mamo
X	2599722	X_2599722_SNP [dm3] X_2705689_SNP [dm6]	G	A	2.847e^-4	1	SYNONYMOUS_CODING eIF2B-beta DOWNSTREAM CG2680	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9582552	2L_9582552_SNP [dm3] 2L_9582552_SNP [dm6]	T	G	2.863e^-4	1	UPSTREAM gcm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3L	12522473	3L_12522473_SNP [dm3] 3L_12529373_SNP [dm6]	A	T	2.863e^-4	1	INTRON nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
X	4549431	X_4549431_SNP [dm3] X_4655398_SNP [dm6]	T	A	2.864e^-4	1	UPSTREAM CG15473 INTRON Cbp80
2L	16382052	2L_16382052_SNP [dm3] 2L_16382052_SNP [dm6]	G	T	2.867e^-4	1	INTERGENIC
3L	2960886	3L_2960886_SNP [dm3] 3L_2960886_SNP [dm6]	A	G	2.876e^-4	1	SYNONYMOUS_CODING CG34025 UPSTREAM Or63a
3R	26770322	3R_26770322_SNP [dm3] 3R_30944600_SNP [dm6]	G	C	2.876e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16321395	3L_16321395_SNP [dm3] 3L_16328295_SNP [dm6]	G	C	2.889e^-4	1	UPSTREAM CG13058 & 1 other INTERGENIC
2L	12136593	2L_12136593_SNP [dm3] 2L_12136593_SNP [dm6]	C	T	2.889e^-4	1	INTERGENIC
2L	6302830	2L_6302830_SNP [dm3] 2L_6302830_SNP [dm6]	T	C	2.894e^-4	1	INTRON Ddr
3L	477814	3L_477814_SNP [dm3] 3L_477814_SNP [dm6]	C	A	2.896e^-4	1	INTRON klar
2R	12450486	2R_12450486_SNP [dm3] 2R_16562981_SNP [dm6]	T	C	2.905e^-4	1	INTRON DAT
2L	16402700	2L_16402700_SNP [dm3] 2L_16402700_SNP [dm6]	A	T	2.936e^-4	1	INTRON CG5888
3R	24313865	3R_24313865_INS [dm3] 3R_28488143_INS [dm6]	T	TGATT	2.953e^-4	1	INTRON Dhc98D
X	3659721	X_3659721_SNP [dm3] X_3765688_SNP [dm6]	G	A	2.953e^-4	1	INTRON tlk
X	5473781	X_5473781_SNP [dm3] X_5579748_SNP [dm6]	A	G	2.958e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1134827	3L_1134827_SNP [dm3] 3L_1134827_SNP [dm6]	C	A	2.965e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2L	16402754	2L_16402754_SNP [dm3] 2L_16402754_SNP [dm6]	A	C	2.967e^-4	1	INTRON CG5888
2R	7362268	2R_7362268_SNP [dm3] 2R_11474763_SNP [dm6]	A	G	2.971e^-4	1	UPSTREAM inv INTRON inv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6520186	3L_6520186_SNP [dm3] 3L_6527086_SNP [dm6]	T	C	2.974e^-4	1	INTRON sfl
2R	17515780	2R_17515780_SNP [dm3] 2R_21628275_SNP [dm6]	A	G	2.975e^-4	1	SYNONYMOUS_CODING mahj	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12591685	3L_12591685_SNP [dm3] 3L_12598585_SNP [dm6]	A	T	2.983e^-4	1	INTERGENIC
3L	11424995	3L_11424995_SNP [dm3] 3L_11431895_SNP [dm6]	T	C	2.995e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16523364	2L_16523364_SNP [dm3] 2L_16523364_SNP [dm6]	G	T	3.005e^-4	1	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20777607	2L_20777607_SNP [dm3] 2L_20777607_SNP [dm6]	T	G	3.006e^-4	1	INTRON cad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15289811	2R_15289811_SNP [dm3] 2R_19402306_SNP [dm6]	G	A	3.008e^-4	1	SYNONYMOUS_CODING hts DOWNSTREAM CR43430 INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	14192766	X_14192766_SNP [dm3] X_14298733_SNP [dm6]	T	C	3.010e^-4	1	INTERGENIC
2L	8738864	2L_8738864_SNP [dm3] 2L_8738864_SNP [dm6]	T	C	3.012e^-4	1	INTRON raw
2R	17474669	2R_17474669_SNP [dm3] 2R_21587164_SNP [dm6]	C	G	3.020e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13217321	X_13217321_SNP [dm3] X_13323288_SNP [dm6]	T	C	3.032e^-4	1	INTRON IP3K2
2L	16485515	2L_16485515_SNP [dm3] 2L_16485515_SNP [dm6]	C	G	3.042e^-4	1	UTR_5_PRIME dac	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	14147599	2R_14147599_SNP [dm3] 2R_18260094_SNP [dm6]	G	A	3.068e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17990025	3R_17990025_SNP [dm3] 3R_22164303_SNP [dm6]	C	T	3.074e^-4	1	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12411172	3L_12411172_SNP [dm3] 3L_12418072_SNP [dm6]	T	G	3.074e^-4	1	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	11383589	3L_11383589_SNP [dm3] 3L_11390489_SNP [dm6]	G	A	3.079e^-4	1	INTERGENIC
X	18661928	X_18661928_SNP [dm3] X_18767895_SNP [dm6]	A	C	3.083e^-4	1	INTRON CCKLR-17D3	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1
X	3555350	X_3555350_SNP [dm3] X_3661317_SNP [dm6]	T	C	3.084e^-4	1	INTRON AstA-R1
2R	12629639	2R_12629639_SNP [dm3] 2R_16742134_SNP [dm6]	T	C	3.086e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7508802	2L_7508802_SNP [dm3] 2L_7508802_SNP [dm6]	C	T	3.089e^-4	1	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	15303116	2R_15303116_SNP [dm3] 2R_19415611_SNP [dm6]	A	G	3.099e^-4	1	DOWNSTREAM tRNA:S4:56D & 2 others INTRON hts	TF binding site BDTNP1_TFBS_twi
3R	25302672	3R_25302672_SNP [dm3] 3R_29476950_SNP [dm6]	G	A	3.111e^-4	1	INTRON Ptp99A
X	4687849	X_4687849_DEL [dm3] X_4793816_DEL [dm6]	TCTACTACATT...	T	3.119e^-4	1	INTERGENIC
3R	21952931	3R_21952931_SNP [dm3] 3R_26127209_SNP [dm6]	C	T	3.150e^-4	1	SYNONYMOUS_CODING CG14556 INTRON CG31324	TF binding site mE1_TFBS_HSA
X	12880896	X_12880896_SNP [dm3] X_12986863_SNP [dm6]	G	C	3.155e^-4	1	INTERGENIC
2L	6275879	2L_6275879_SNP [dm3] 2L_6275879_SNP [dm6]	A	T	3.170e^-4	1	INTRON Ddr
3R	6939736	3R_6939736_SNP [dm3] 3R_11114014_SNP [dm6]	G	A	3.172e^-4	1	DOWNSTREAM CG6629 INTERGENIC
3R	15071254	3R_15071254_SNP [dm3] 3R_19245532_SNP [dm6]	T	C	3.174e^-4	1	INTRON unc79
2R	8495991	2R_8495991_SNP [dm3] 2R_12608486_SNP [dm6]	A	T	3.180e^-4	1	INTRON Amph	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14030755	2L_14030755_SNP [dm3] 2L_14030755_SNP [dm6]	T	C	3.186e^-4	1	SYNONYMOUS_CODING CG18095	TF binding site mE1_TFBS_HSA
3R	11862929	3R_11862929_SNP [dm3] 3R_16037207_SNP [dm6]	G	A	3.186e^-4	1	INTRON pnr
2L	3572467	2L_3572467_SNP [dm3] 2L_3572467_SNP [dm6]	A	G	3.192e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8234133	X_8234133_SNP [dm3] X_8340100_SNP [dm6]	T	G	3.203e^-4	1	INTRON nAChRalpha3
2L	16520520	2L_16520520_SNP [dm3] 2L_16520520_SNP [dm6]	T	A	3.204e^-4	1	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2L	1614680	2L_1614680_SNP [dm3] 2L_1614680_SNP [dm6]	A	C	3.210e^-4	1	UPSTREAM RFeSP INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8072863	3L_8072863_SNP [dm3] 3L_8079763_SNP [dm6]	C	G	3.223e^-4	1	INTRON Ect4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	8705388	3L_8705388_SNP [dm3] 3L_8712288_SNP [dm6]	A	C	3.229e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	19547275	2R_19547275_SNP [dm3] 2R_23659752_SNP [dm6]	A	G	3.232e^-4	1	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8742594	2L_8742594_SNP [dm3] 2L_8742594_SNP [dm6]	G	A	3.239e^-4	1	INTERGENIC
2L	14071525	2L_14071525_SNP [dm3] 2L_14071525_SNP [dm6]	T	C	3.243e^-4	1	INTRON nAChRalpha5	TF binding site mE1_TFBS_HSA
3L	12522474	3L_12522474_SNP [dm3] 3L_12529374_SNP [dm6]	C	A	3.247e^-4	1	INTRON nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
2R	17160702	2R_17160702_SNP [dm3] 2R_21273197_SNP [dm6]	A	G	3.248e^-4	1	INTRON Rgk3
2L	8329360	2L_8329360_SNP [dm3] 2L_8329360_SNP [dm6]	T	A	3.255e^-4	1	INTRON CG14275
2L	1147966	2L_1147966_SNP [dm3] 2L_1147966_SNP [dm6]	A	G	3.259e^-4	1	SYNONYMOUS_CODING CG4749 DOWNSTREAM MFS3	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	18030846	3L_18030846_SNP [dm3] 3L_18037746_SNP [dm6]	T	C	3.264e^-4	1	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3255981	X_3255981_SNP [dm3] X_3361948_SNP [dm6]	C	T	3.271e^-4	1	INTERGENIC
X	3658053	X_3658053_SNP [dm3] X_3764020_SNP [dm6]	T	C	3.272e^-4	1	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3658055	X_3658055_SNP [dm3] X_3764022_SNP [dm6]	C	T	3.272e^-4	1	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7253198	2L_7253198_SNP [dm3] 2L_7253198_SNP [dm6]	T	C	3.283e^-4	1	UPSTREAM CG13786 INTERGENIC
3L	19081852	3L_19081852_SNP [dm3] 3L_19088752_SNP [dm6]	C	G	3.284e^-4	1	INTERGENIC
2L	13227506	2L_13227506_SNP [dm3] 2L_13227506_SNP [dm6]	C	A	3.288e^-4	1	UPSTREAM CG16813 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	7819406	2L_7819406_SNP [dm3] 2L_7819406_SNP [dm6]	C	T	3.294e^-4	1	SYNONYMOUS_CODING LanB1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	21057012	X_21057012_SNP [dm3] X_21185985_SNP [dm6]	G	A	3.305e^-4	1	INTERGENIC
2L	7253228	2L_7253228_SNP [dm3] 2L_7253228_SNP [dm6]	C	T	3.323e^-4	1	UPSTREAM CG13786 INTERGENIC
2R	8907944	2R_8907944_SNP [dm3] 2R_13020439_SNP [dm6]	A	C	3.330e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	11397383	2R_11397383_SNP [dm3] 2R_15509878_SNP [dm6]	C	T	3.352e^-4	1	INTERGENIC
2R	12057887	2R_12057887_SNP [dm3] 2R_16170382_SNP [dm6]	T	C	3.352e^-4	1	SYNONYMOUS_CODING CG8435 DOWNSTREAM lbk & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	12580566	3L_12580566_SNP [dm3] 3L_12587466_SNP [dm6]	G	A	3.359e^-4	1	INTRON ara
2L	3739177	2L_3739177_SNP [dm3] 2L_3739177_SNP [dm6]	A	G	3.391e^-4	1	INTRON CG10019
2L	1615111	2L_1615111_SNP [dm3] 2L_1615111_SNP [dm6]	C	T	3.397e^-4	1	UPSTREAM RFeSP INTERGENIC
2R	19561579	2R_19561579_SNP [dm3] 2R_23674056_SNP [dm6]	G	C	3.406e^-4	1	INTRON Pde8	TF binding site mE1_TFBS_chinmo
2R	20045369	2R_20045369_SNP [dm3] 2R_24157846_SNP [dm6]	G	C	3.410e^-4	1	NON_SYNONYMOUS_CODING CG42568 UTR_3_PRIME DnaJ-60 DOWNSTREAM DnaJ-60 & 1 other	TF binding site mE1_TFBS_chinmo
X	8347939	X_8347939_SNP [dm3] X_8453906_SNP [dm6]	G	A	3.441e^-4	1	INTRON org-1
X	8779393	X_8779393_SNP [dm3] X_8885360_SNP [dm6]	G	T	3.447e^-4	1	INTRON Moe
2L	10218451	2L_10218451_SNP [dm3] 2L_10218451_SNP [dm6]	T	A	3.451e^-4	1	INTRON Npc1a	TF binding site mE1_TFBS_HSA
2L	18614311	2L_18614311_SNP [dm3] 2L_18614311_SNP [dm6]	C	G	3.463e^-4	1	DOWNSTREAM CG15161 INTERGENIC
3L	11424992	3L_11424992_SNP [dm3] 3L_11431892_SNP [dm6]	C	T	3.467e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1399069	3L_1399069_SNP [dm3] 3L_1399069_SNP [dm6]	G	C	3.469e^-4	1	DOWNSTREAM tRNA:E4:62Ac & 1 other INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_sens
3L	3533851	3L_3533851_SNP [dm3] 3L_3533851_SNP [dm6]	C	T	3.487e^-4	1	INTRON Eip63E
X	12024979	X_12024979_SNP [dm3] X_12130946_SNP [dm6]	T	G	3.492e^-4	1	INTRON Ten-a
3L	1869575	3L_1869575_SNP [dm3] 3L_1869575_SNP [dm6]	T	C	3.501e^-4	1	UPSTREAM CG13924 DOWNSTREAM CG12025 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18930537	X_18930537_SNP [dm3] X_19036504_SNP [dm6]	G	C	3.516e^-4	1	INTERGENIC
2L	3566121	2L_3566121_SNP [dm3] 2L_3566121_SNP [dm6]	A	T	3.523e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19072289	2R_19072289_SNP [dm3] 2R_23184766_SNP [dm6]	C	T	3.548e^-4	1	SYNONYMOUS_CODING CG13539 INTRON CG34371	TF binding site mE1_TFBS_sens
2R	7362381	2R_7362381_SNP [dm3] 2R_11474876_SNP [dm6]	C	T	3.551e^-4	1	UTR_5_PRIME inv UPSTREAM inv	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14026100	3R_14026100_SNP [dm3] 3R_18200378_SNP [dm6]	A	G	3.554e^-4	1	UTR_5_PRIME CG7985 UPSTREAM Ssdp INTRON CG7985	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
2L	12136337	2L_12136337_SNP [dm3] 2L_12136337_SNP [dm6]	A	T	3.559e^-4	1	INTERGENIC
X	18930577	X_18930577_SNP [dm3] X_19036544_SNP [dm6]	A	C	3.565e^-4	1	INTERGENIC
2R	12629611	2R_12629611_SNP [dm3] 2R_16742106_SNP [dm6]	C	G	3.568e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14032345	2L_14032345_SNP [dm3] 2L_14032345_SNP [dm6]	A	G	3.575e^-4	1	UPSTREAM CG18095 EXON CR45284
2L	6258601	2L_6258601_SNP [dm3] 2L_6258601_SNP [dm6]	C	G	3.594e^-4	1	INTRON Ddr
2L	21306880	2L_21306880_SNP [dm3] 2L_21306880_SNP [dm6]	G	C	3.602e^-4	1	INTRON Mio	transposable element FlyBase
2R	8550736	2R_8550736_SNP [dm3] 2R_12663231_SNP [dm6]	G	T	3.605e^-4	1	UPSTREAM nemy INTRON nemy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6283921	2L_6283921_SNP [dm3] 2L_6283921_SNP [dm6]	A	T	3.611e^-4	1	INTRON Ddr
3L	18030806	3L_18030806_SNP [dm3] 3L_18037706_SNP [dm6]	T	G	3.617e^-4	1	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5835191	X_5835191_SNP [dm3] X_5941158_SNP [dm6]	G	A	3.627e^-4	1	SPLICE_SITE_REGION CG3726 INTRON CG3726
X	14192953	X_14192953_SNP [dm3] X_14298920_SNP [dm6]	G	T	3.630e^-4	1	INTERGENIC
2R	19330818	2R_19330818_SNP [dm3] 2R_23443295_SNP [dm6]	G	A	3.638e^-4	1	UPSTREAM CG43795 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17031433	2R_17031433_SNP [dm3] 2R_21143928_SNP [dm6]	A	G	3.641e^-4	1	NON_SYNONYMOUS_CODING Xbp1 DOWNSTREAM CG9406	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	2629763	2L_2629763_SNP [dm3] 2L_2629763_SNP [dm6]	C	T	3.645e^-4	1	INTERGENIC
3R	16213280	3R_16213280_SNP [dm3] 3R_20387558_SNP [dm6]	T	C	3.646e^-4	1	SYNONYMOUS_CODING Gfrl
3R	24279204	3R_24279204_SNP [dm3] 3R_28453482_SNP [dm6]	T	C	3.647e^-4	1	INTRON beat-VI
2L	13171106	2L_13171106_SNP [dm3] 2L_13171106_SNP [dm6]	G	A	3.664e^-4	1	INTRON Sfmbt
3L	16820947	3L_16820947_SNP [dm3] 3L_16827847_SNP [dm6]	A	G	3.690e^-4	1	INTRON CG13024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11905451	2L_11905451_SNP [dm3] 2L_11905451_SNP [dm6]	C	T	3.706e^-4	1	INTRON Pde1c
2L	16504869	2L_16504869_SNP [dm3] 2L_16504869_SNP [dm6]	C	T	3.717e^-4	1	INTRON Tpr2
3L	12591631	3L_12591631_SNP [dm3] 3L_12598531_SNP [dm6]	T	G	3.718e^-4	1	INTERGENIC
2L	506774	2L_506774_SNP [dm3] 2L_506774_SNP [dm6]	T	A	3.721e^-4	1	INTRON ush
2L	9136847	2L_9136847_SNP [dm3] 2L_9136847_SNP [dm6]	C	T	3.740e^-4	1	INTRON CG32982
3L	14152927	3L_14152927_SNP [dm3] 3L_14159827_SNP [dm6]	A	T	3.748e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	5864367	3R_5864367_SNP [dm3] 3R_10038645_SNP [dm6]	A	T	3.750e^-4	1	INTRON Mical
2L	18514984	2L_18514984_SNP [dm3] 2L_18514984_SNP [dm6]	C	G	3.753e^-4	1	INTERGENIC
3R	15071168	3R_15071168_SNP [dm3] 3R_19245446_SNP [dm6]	G	A	3.754e^-4	1	INTRON unc79
3L	2989253	3L_2989253_SNP [dm3] 3L_2989253_SNP [dm6]	T	G	3.755e^-4	1	INTERGENIC
2L	6284111	2L_6284111_SNP [dm3] 2L_6284111_SNP [dm6]	G	A	3.758e^-4	1	INTRON Ddr
2L	3566210	2L_3566210_SNP [dm3] 2L_3566210_SNP [dm6]	A	G	3.772e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	6754302	2L_6754302_SNP [dm3] 2L_6754302_SNP [dm6]	C	T	3.777e^-4	1	SYNONYMOUS_CODING CG11221	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17901462	2L_17901462_SNP [dm3] 2L_17901462_SNP [dm6]	C	T	3.789e^-4	1	DOWNSTREAM CR45332 INTERGENIC
3L	1690154	3L_1690154_SNP [dm3] 3L_1690154_SNP [dm6]	G	A	3.798e^-4	1	INTRON CG7991
2R	16439835	2R_16439835_SNP [dm3] 2R_20552330_SNP [dm6]	T	C	3.805e^-4	1	UPSTREAM CG13430 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	7499035	3L_7499035_SNP [dm3] 3L_7505935_SNP [dm6]	A	G	3.815e^-4	1	SYNONYMOUS_CODING CG7548	TF binding site mE1_TFBS_cad
X	3967536	X_3967536_SNP [dm3] X_4073503_SNP [dm6]	T	C	3.829e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15111722	3R_15111722_SNP [dm3] 3R_19286000_SNP [dm6]	C	A	3.838e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12671830	2L_12671830_SNP [dm3] 2L_12671830_SNP [dm6]	T	G	3.846e^-4	1	INTRON pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens
3L	16666793	3L_16666793_SNP [dm3] 3L_16673693_SNP [dm6]	A	C	3.848e^-4	1	UPSTREAM CG13032 & 1 other INTERGENIC	regulatory region REDfly_CRMs
2R	7362281	2R_7362281_SNP [dm3] 2R_11474776_SNP [dm6]	A	T	3.872e^-4	1	UPSTREAM inv INTRON inv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8907946	2R_8907946_SNP [dm3] 2R_13020441_SNP [dm6]	G	T	3.899e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	20214086	2R_20214086_SNP [dm3] 2R_24326563_SNP [dm6]	A	G	3.901e^-4	1	INTRON CR44810
3L	1134238	3L_1134238_SNP [dm3] 3L_1134238_SNP [dm6]	G	C	3.902e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3R	24040344	3R_24040344_SNP [dm3] 3R_28214622_SNP [dm6]	A	G	3.913e^-4	1	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	5499611	2L_5499611_SNP [dm3] 2L_5499611_SNP [dm6]	A	T	3.914e^-4	1	INTERGENIC
2L	15608967	2L_15608967_SNP [dm3] 2L_15608967_SNP [dm6]	G	A	3.921e^-4	1	INTERGENIC
2R	17171864	2R_17171864_INS [dm3] 2R_21284359_INS [dm6]	A	AC	3.924e^-4	1	DOWNSTREAM CG10505 INTRON MFS16	TF binding site mE1_TFBS_cad
3L	12410837	3L_12410837_SNP [dm3] 3L_12417737_SNP [dm6]	A	G	3.935e^-4	1	UPSTREAM ArfGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_Med
2L	6273280	2L_6273280_SNP [dm3] 2L_6273280_SNP [dm6]	C	G	3.937e^-4	1	INTRON Ddr
X	4412147	X_4412147_SNP [dm3] X_4518114_SNP [dm6]	A	G	3.947e^-4	1	INTRON CR32773	silencer mE1_HDAC_PRE
X	3444096	X_3444096_SNP [dm3] X_3550063_SNP [dm6]	A	G	3.953e^-4	1	INTRON CG32791
2L	14372715	2L_14372715_SNP [dm3] 2L_14372715_SNP [dm6]	G	T	3.966e^-4	1	INTERGENIC
3L	3820154	3L_3820154_SNP [dm3] 3L_3820154_SNP [dm6]	A	C	3.978e^-4	1	INTRON enc
2L	6284412	2L_6284412_SNP [dm3] 2L_6284412_SNP [dm6]	T	C	3.978e^-4	1	INTRON Ddr	TF binding site mE1_TFBS_cad
3L	1134824	3L_1134824_SNP [dm3] 3L_1134824_SNP [dm6]	T	G	3.983e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2L	9718029	2L_9718029_SNP [dm3] 2L_9718029_SNP [dm6]	A	G	3.985e^-4	1	INTRON Nckx30C
X	13648168	X_13648168_DEL [dm3] X_13754135_DEL [dm6]	AAATTGAAA	A	3.989e^-4	1	INTRON Pdcd4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	16105753	X_16105753_SNP [dm3] X_16211720_SNP [dm6]	T	A	3.995e^-4	1	NON_SYNONYMOUS_CODING disco	TF binding site mE1_TFBS_chinmo
2L	16521467	2L_16521467_SNP [dm3] 2L_16521467_SNP [dm6]	G	A	4.010e^-4	1	INTRON CG5953	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	18930581	X_18930581_SNP [dm3] X_19036548_SNP [dm6]	A	T	4.018e^-4	1	INTERGENIC
2L	2862994	2L_2862994_SNP [dm3] 2L_2862994_SNP [dm6]	A	G	4.030e^-4	1	INTRON CG2991	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	23906100	3R_23906100_SNP [dm3] 3R_28080378_SNP [dm6]	T	C	4.031e^-4	1	INTRON CG34362
X	20798115	X_20798115_SNP [dm3] X_20927088_SNP [dm6]	T	A	4.063e^-4	1	UPSTREAM shakB INTERGENIC	TF binding site mE1_TFBS_HSA
3R	8751244	3R_8751244_SNP [dm3] 3R_12925522_SNP [dm6]	C	T	4.064e^-4	1	INTRON beat-Vb
2R	9615209	2R_9615209_SNP [dm3] 2R_13727704_SNP [dm6]	T	A	4.070e^-4	1	INTRON fas
3R	22685078	3R_22685078_SNP [dm3] 3R_26859356_SNP [dm6]	C	T	4.075e^-4	1	INTRON Lerp	TF binding site mE1_TFBS_chinmo
2R	12629714	2R_12629714_SNP [dm3] 2R_16742209_SNP [dm6]	C	A	4.076e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1675731	3L_1675731_INS [dm3] 3L_1675731_INS [dm6]	A	AT	4.076e^-4	1	INTRON CG7991	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3887588	2L_3887588_SNP [dm3] 2L_3887588_SNP [dm6]	C	T	4.078e^-4	1	SYNONYMOUS_CODING capu INTRON capu
2L	9582550	2L_9582550_SNP [dm3] 2L_9582550_SNP [dm6]	A	G	4.079e^-4	1	UPSTREAM gcm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3L	1847812	3L_1847812_SNP [dm3] 3L_1847812_SNP [dm6]	C	G	4.092e^-4	1	INTERGENIC
2L	3238374	2L_3238374_SNP [dm3] 2L_3238374_SNP [dm6]	G	T	4.094e^-4	1	INTERGENIC
2L	7509421	2L_7509421_SNP [dm3] 2L_7509421_SNP [dm6]	T	C	4.097e^-4	1	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	9582607	2L_9582607_SNP [dm3] 2L_9582607_SNP [dm6]	T	C	4.097e^-4	1	UPSTREAM gcm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	13171424	2L_13171424_SNP [dm3] 2L_13171424_SNP [dm6]	C	G	4.097e^-4	1	SYNONYMOUS_CODING Sfmbt
2R	11214152	2R_11214152_SNP [dm3] 2R_15326647_SNP [dm6]	C	T	4.115e^-4	1	UPSTREAM CG8157 DOWNSTREAM CG8160 INTERGENIC
2L	6280600	2L_6280600_SNP [dm3] 2L_6280600_SNP [dm6]	A	T	4.121e^-4	1	INTRON Ddr
3R	14793903	3R_14793903_SNP [dm3] 3R_18968181_SNP [dm6]	A	T	4.126e^-4	1	INTRON CG42613 & 1 other
2R	16038319	2R_16038319_SNP [dm3] 2R_20150814_SNP [dm6]	C	T	4.127e^-4	1	EXON CR45229
2R	3614372	2R_3614372_SNP [dm3] 2R_7726867_SNP [dm6]	A	T	4.128e^-4	1	UPSTREAM CG18812 INTRON CG18812
3L	1134706	3L_1134706_SNP [dm3] 3L_1134706_SNP [dm6]	G	T	4.131e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2L	7695746	2L_7695746_SNP [dm3] 2L_7695746_SNP [dm6]	G	A	4.133e^-4	1	NON_SYNONYMOUS_CODING Tep2	TF binding site mE1_TFBS_sens
3R	26780582	3R_26780582_SNP [dm3] 3R_30954860_SNP [dm6]	G	A	4.136e^-4	1	INTERGENIC
3R	11862947	3R_11862947_SNP [dm3] 3R_16037225_SNP [dm6]	T	A	4.164e^-4	1	INTRON pnr
2L	1734494	2L_1734494_DEL [dm3] 2L_1734494_DEL [dm6]	CCGC	C	4.177e^-4	1	INTRON CG17646
2L	17367552	2L_17367552_SNP [dm3] 2L_17367552_SNP [dm6]	T	A	4.180e^-4	1	UTR_3_PRIME Lrch
2L	12136333	2L_12136333_INS [dm3] 2L_12136333_INS [dm6]	T	TTTGTAAGT	4.187e^-4	1	INTERGENIC
2L	12157913	2L_12157913_SNP [dm3] 2L_12157913_SNP [dm6]	T	A	4.241e^-4	1	INTRON CG31760
3R	8094057	3R_8094057_SNP [dm3] 3R_12268335_SNP [dm6]	A	G	4.249e^-4	1	UPSTREAM CR44039 INTRON svp
3L	6101433	3L_6101433_SNP [dm3] 3L_6108333_SNP [dm6]	A	T	4.262e^-4	1	INTRON Ets65A	TF binding site mE1_TFBS_cad
X	20959412	X_20959412_SNP [dm3] X_21088385_SNP [dm6]	G	A	4.269e^-4	1	INTERGENIC	transposable element FlyBase
2L	9582811	2L_9582811_INS [dm3] 2L_9582811_INS [dm6]	T	TA	4.281e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	1134098	3L_1134098_SNP [dm3] 3L_1134098_SNP [dm6]	C	G	4.281e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	8729772	3L_8729772_SNP [dm3] 3L_8736672_SNP [dm6]	C	T	4.293e^-4	1	UTR_3_PRIME Prm INTRON Prm	TF binding site mE1_TFBS_inv
2R	6886695	2R_6886695_SNP [dm3] 2R_10999190_SNP [dm6]	G	C	4.294e^-4	1	INTRON luna
X	5872645	X_5872645_SNP [dm3] X_5978612_SNP [dm6]	G	T	4.301e^-4	1	INTRON Grip
3L	1862426	3L_1862426_SNP [dm3] 3L_1862426_SNP [dm6]	A	T	4.307e^-4	1	UPSTREAM R DOWNSTREAM HBS1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	17366801	2L_17366801_SNP [dm3] 2L_17366801_SNP [dm6]	C	A	4.320e^-4	1	DOWNSTREAM Lrch INTERGENIC
2L	7209950	2L_7209950_SNP [dm3] 2L_7209950_SNP [dm6]	A	C	4.329e^-4	1	INTRON CG13784
3R	15123572	3R_15123572_SNP [dm3] 3R_19297850_SNP [dm6]	T	A	4.335e^-4	1	UPSTREAM CG44174 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6272903	2L_6272903_DEL [dm3] 2L_6272903_DEL [dm6]	GAGTCAAGGGGGCGAG...	G	4.336e^-4	1	CODON_DELETION Ddr
2R	9281641	2R_9281641_SNP [dm3] 2R_13394136_SNP [dm6]	T	A	4.342e^-4	1	UPSTREAM CG43691 DOWNSTREAM CG4744 INTRON AttC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14057977	3R_14057977_SNP [dm3] 3R_18232255_SNP [dm6]	A	T	4.356e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	12530300	2R_12530300_SNP [dm3] 2R_16642795_SNP [dm6]	G	C	4.363e^-4	1	INTRON gprs
2L	6280606	2L_6280606_SNP [dm3] 2L_6280606_SNP [dm6]	T	G	4.374e^-4	1	INTRON Ddr
2L	9666419	2L_9666419_SNP [dm3] 2L_9666419_SNP [dm6]	A	C	4.377e^-4	1	INTERGENIC
3L	4088076	3L_4088076_SNP [dm3] 3L_4088076_SNP [dm6]	C	A	4.379e^-4	1	INTRON Gad1 & 1 other
X	13826247	X_13826247_SNP [dm3] X_13932214_SNP [dm6]	A	T	4.379e^-4	1	INTRON mamo
3R	1771614	3R_1771614_SNP [dm3] 3R_5945892_SNP [dm6]	A	G	4.384e^-4	1	INTRON CG34113
2L	9707816	2L_9707816_SNP [dm3] 2L_9707816_SNP [dm6]	C	T	4.390e^-4	1	INTRON pelo
2L	16230337	2L_16230337_SNP [dm3] 2L_16230337_SNP [dm6]	A	T	4.393e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	16230341	2L_16230341_SNP [dm3] 2L_16230341_SNP [dm6]	T	A	4.393e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	16230380	2L_16230380_SNP [dm3] 2L_16230380_SNP [dm6]	G	A	4.393e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	9287065	X_9287065_SNP [dm3] X_9393032_SNP [dm6]	G	C	4.399e^-4	1	INTRON mgl
X	4730468	X_4730468_SNP [dm3] X_4836435_SNP [dm6]	A	G	4.401e^-4	1	INTERGENIC
3R	15123569	3R_15123569_SNP [dm3] 3R_19297847_SNP [dm6]	T	C	4.416e^-4	1	UPSTREAM CG44174 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19595698	2R_19595698_SNP [dm3] 2R_23708175_SNP [dm6]	C	T	4.420e^-4	1	NON_SYNONYMOUS_CODING l_2_tid INTRON l_2_not	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3657037	X_3657037_INS [dm3] X_3763004_INS [dm6]	A	ACATA	4.428e^-4	1	INTRON tlk
3L	4342916	3L_4342916_SNP [dm3] 3L_4342916_SNP [dm6]	G	A	4.433e^-4	1	INTRON Cip4
2R	10769836	2R_10769836_SNP [dm3] 2R_14882331_SNP [dm6]	T	C	4.434e^-4	1	NON_SYNONYMOUS_CODING Cyp6a20 UPSTREAM Cyp6a9	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	12440238	2R_12440238_SNP [dm3] 2R_16552733_SNP [dm6]	A	G	4.435e^-4	1	INTRON Syn2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	14808537	X_14808537_SNP [dm3] X_14914504_SNP [dm6]	C	T	4.456e^-4	1	UPSTREAM CG12398 INTRON Flo2
2L	6531343	2L_6531343_SNP [dm3] 2L_6531343_SNP [dm6]	C	T	4.459e^-4	1	UPSTREAM eya INTRON eya	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	8234144	X_8234144_SNP [dm3] X_8340111_SNP [dm6]	G	T	4.468e^-4	1	INTRON nAChRalpha3
3R	14729597	3R_14729597_SNP [dm3] 3R_18903875_SNP [dm6]	C	G	4.469e^-4	1	UPSTREAM CG34284 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2961113	3L_2961113_SNP [dm3] 3L_2961113_SNP [dm6]	G	A	4.472e^-4	1	UPSTREAM Or63a & 1 other INTERGENIC
3L	12467044	3L_12467044_SNP [dm3] 3L_12473944_SNP [dm6]	T	C	4.479e^-4	1	SYNONYMOUS_CODING CG10616 DOWNSTREAM CG10663	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15695272	3R_15695272_SNP [dm3] 3R_19869550_SNP [dm6]	A	G	4.485e^-4	1	SYNONYMOUS_CODING CG4562	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7928139	3L_7928139_SNP [dm3] 3L_7935039_SNP [dm6]	T	C	4.486e^-4	1	UPSTREAM syd INTRON syd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12666198	3L_12666198_SNP [dm3] 3L_12673098_SNP [dm6]	A	G	4.494e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2547739	3L_2547739_SNP [dm3] 3L_2547739_SNP [dm6]	A	T	4.506e^-4	1	INTRON Spn
3L	2091185	3L_2091185_SNP [dm3] 3L_2091185_SNP [dm6]	A	G	4.511e^-4	1	INTRON sls	TF binding site mE1_TFBS_HSA
2L	3149922	2L_3149922_SNP [dm3] 2L_3149922_SNP [dm6]	C	A	4.516e^-4	1	INTRON Mad
3R	25318907	3R_25318907_SNP [dm3] 3R_29493185_SNP [dm6]	C	G	4.524e^-4	1	UPSTREAM Diedel INTRON CG2310	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_zfh1
2R	12317849	2R_12317849_INS [dm3] 2R_16430344_INS [dm6]	G	GG	4.531e^-4	1	UTR_3_PRIME Sema-2b
3L	18030737	3L_18030737_SNP [dm3] 3L_18037637_SNP [dm6]	C	T	4.531e^-4	1	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8515802	2R_8515802_SNP [dm3] 2R_12628297_SNP [dm6]	T	C	4.547e^-4	1	SYNONYMOUS_CODING CG17760 DOWNSTREAM muskelin
3R	24276669	3R_24276669_SNP [dm3] 3R_28450947_SNP [dm6]	C	A	4.550e^-4	1	INTRON beat-VI	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11213350	3L_11213350_SNP [dm3] 3L_11220250_SNP [dm6]	A	G	4.557e^-4	1	INTRON CG42671	TF binding site mE1_TFBS_cad
2L	17367009	2L_17367009_SNP [dm3] 2L_17367009_SNP [dm6]	A	G	4.558e^-4	1	DOWNSTREAM Lrch INTERGENIC
2R	10767144	2R_10767144_SNP [dm3] 2R_14879639_SNP [dm6]	A	G	4.561e^-4	1	UTR_3_PRIME Cyp6a19 & 1 other DOWNSTREAM Cyp6a19
X	6255465	X_6255465_SNP [dm3] X_6361432_SNP [dm6]	T	C	4.564e^-4	1	DOWNSTREAM swaPsi & 1 other INTERGENIC
2L	17367550	2L_17367550_SNP [dm3] 2L_17367550_SNP [dm6]	G	A	4.587e^-4	1	UTR_3_PRIME Lrch
3R	21391872	3R_21391872_SNP [dm3] 3R_25566150_SNP [dm6]	T	A	4.598e^-4	1	INTRON msi
3R	23902358	3R_23902358_SNP [dm3] 3R_28076636_SNP [dm6]	A	T	4.607e^-4	1	INTRON CG34362
3L	10361909	3L_10361909_SNP [dm3] 3L_10368809_SNP [dm6]	C	G	4.619e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13828100	3L_13828100_SNP [dm3] 3L_13835000_SNP [dm6]	C	T	4.627e^-4	1	INTERGENIC
X	6445572	X_6445572_SNP [dm3] X_6551539_SNP [dm6]	G	C	4.633e^-4	1	INTRON CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	18395037	3R_18395037_SNP [dm3] 3R_22569315_SNP [dm6]	C	A	4.634e^-4	1	UPSTREAM CG33110 INTERGENIC	TF binding site mE1_TFBS_inv
3L	11522527	3L_11522527_SNP [dm3] 3L_11529427_SNP [dm6]	G	T	4.636e^-4	1	INTRON Mob2
3L	5760086	3L_5760086_SNP [dm3] 3L_5766986_SNP [dm6]	C	T	4.643e^-4	1	SYNONYMOUS_CODING Txl DOWNSTREAM Ppat-Dpck	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	10021434	X_10021434_SNP [dm3] X_10127401_SNP [dm6]	C	A	4.648e^-4	1	INTRON CR44894 & 1 other
3L	6504172	3L_6504172_SNP [dm3] 3L_6511072_SNP [dm6]	A	T	4.658e^-4	1	INTRON sfl
3R	15123551	3R_15123551_SNP [dm3] 3R_19297829_SNP [dm6]	A	G	4.661e^-4	1	UPSTREAM CG44174 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6305428	2L_6305428_SNP [dm3] 2L_6305428_SNP [dm6]	T	G	4.662e^-4	1	INTRON Ddr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23382864	3R_23382864_DEL [dm3] 3R_27557142_DEL [dm6]	AGA	A	4.673e^-4	1	INTRON Klp98A	TF binding site BDTNP1_TFBS_z
2L	13171107	2L_13171107_SNP [dm3] 2L_13171107_SNP [dm6]	T	C	4.680e^-4	1	INTRON Sfmbt
2L	5499720	2L_5499720_SNP [dm3] 2L_5499720_SNP [dm6]	T	G	4.685e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24265755	3R_24265755_SNP [dm3] 3R_28440033_SNP [dm6]	G	T	4.697e^-4	1	INTRON beat-VI
3R	24265756	3R_24265756_DEL [dm3] 3R_28440034_DEL [dm6]	TACTTATCCGC...	T	4.697e^-4	1	INTRON beat-VI
3L	4447443	3L_4447443_SNP [dm3] 3L_4447443_SNP [dm6]	C	T	4.704e^-4	1	SYNONYMOUS_CODING CG12607
2L	15330368	2L_15330368_SNP [dm3] 2L_15330368_SNP [dm6]	C	A	4.726e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	12410841	3L_12410841_DEL [dm3] 3L_12417741_DEL [dm6]	AAATATCTTAAGCAAACAAG...	A	4.730e^-4	1	UPSTREAM ArfGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	6379371	2R_6379371_SNP [dm3] 2R_10491866_SNP [dm6]	T	A	4.731e^-4	1	UTR_3_PRIME lola INTRON lola
2L	1670972	2L_1670972_SNP [dm3] 2L_1670972_SNP [dm6]	C	G	4.736e^-4	1	INTRON chinmo
3L	2289432	3L_2289432_SNP [dm3] 3L_2289432_SNP [dm6]	T	G	4.740e^-4	1	INTRON MsR2
3L	2289433	3L_2289433_INS [dm3] 3L_2289433_INS [dm6]	G	GT	4.740e^-4	1	INTRON MsR2
2R	6560902	2R_6560902_SNP [dm3] 2R_10673397_SNP [dm6]	C	A	4.764e^-4	1	UTR_5_PRIME stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA
2R	19143280	2R_19143280_SNP [dm3] 2R_23255757_SNP [dm6]	G	T	4.770e^-4	1	INTERGENIC
2L	4356573	2L_4356573_SNP [dm3] 2L_4356573_SNP [dm6]	T	C	4.771e^-4	1	INTERGENIC
2R	17160645	2R_17160645_SNP [dm3] 2R_21273140_SNP [dm6]	C	G	4.787e^-4	1	INTRON Rgk3
3L	10944262	3L_10944262_SNP [dm3] 3L_10951162_SNP [dm6]	T	C	4.797e^-4	1	INTERGENIC
2L	2552108	2L_2552108_SNP [dm3] 2L_2552108_SNP [dm6]	A	C	4.798e^-4	1	SYNONYMOUS_CODING CG3515	TF binding site BDTNP1_TFBS_sna
2R	15290987	2R_15290987_SNP [dm3] 2R_19403482_SNP [dm6]	G	C	4.799e^-4	1	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7611798	2L_7611798_SNP [dm3] 2L_7611798_SNP [dm6]	T	A	4.810e^-4	1	INTRON CG6739	TF binding site BDTNP1_TFBS_twi
2R	19975316	2R_19975316_SNP [dm3] 2R_24087793_SNP [dm6]	T	G	4.813e^-4	1	NON_SYNONYMOUS_CODING snama
2L	8889151	2L_8889151_SNP [dm3] 2L_8889151_SNP [dm6]	A	T	4.818e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
X	20957194	X_20957194_SNP [dm3] X_21086167_SNP [dm6]	A	G	4.821e^-4	1	INTERGENIC
3L	1671705	3L_1671705_SNP [dm3] 3L_1671705_SNP [dm6]	C	T	4.822e^-4	1	SYNONYMOUS_CODING CG13930	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12137491	2R_12137491_SNP [dm3] 2R_16249986_SNP [dm6]	A	T	4.826e^-4	1	UPSTREAM CngA INTRON CngA
2L	1735658	2L_1735658_DEL [dm3] 2L_1735658_DEL [dm6]	TACTGTATGG	T	4.830e^-4	1	INTRON CG17646
2L	1735682	2L_1735682_DEL [dm3] 2L_1735682_DEL [dm6]	GGTACCT	C	4.830e^-4	1	INTRON CG17646
2L	16634085	2L_16634085_SNP [dm3] 2L_16634085_SNP [dm6]	A	C	4.838e^-4	1	INTRON CG42389
2R	15291776	2R_15291776_SNP [dm3] 2R_19404271_SNP [dm6]	T	G	4.844e^-4	1	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18030804	3L_18030804_SNP [dm3] 3L_18037704_SNP [dm6]	T	C	4.854e^-4	1	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5886990	3L_5886990_SNP [dm3] 3L_5893890_SNP [dm6]	C	T	4.861e^-4	1	INTERGENIC
2L	3561568	2L_3561568_SNP [dm3] 2L_3561568_SNP [dm6]	T	C	4.865e^-4	1	UPSTREAM CR44309 INTERGENIC	TF binding site mE1_TFBS_HSA
X	4859663	X_4859663_SNP [dm3] X_4965630_SNP [dm6]	G	A	4.867e^-4	1	INTRON CR44833	regulatory region REDfly_CRMs
2L	3566090	2L_3566090_SNP [dm3] 2L_3566090_SNP [dm6]	G	C	4.887e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18386831	X_18386831_SNP [dm3] X_18492798_SNP [dm6]	C	T	4.889e^-4	1	UPSTREAM CG15044 DOWNSTREAM CG15043 INTERGENIC
3R	24007696	3R_24007696_SNP [dm3] 3R_28181974_SNP [dm6]	C	G	4.893e^-4	1	INTRON CG34354
2R	14026283	2R_14026283_SNP [dm3] 2R_18138778_SNP [dm6]	G	A	4.897e^-4	1	SPLICE_SITE_REGION Pcl INTRON Pcl	TF binding site mE1_TFBS_sens
2L	3566818	2L_3566818_SNP [dm3] 2L_3566818_SNP [dm6]	T	C	4.904e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	8642187	3L_8642187_SNP [dm3] 3L_8649087_SNP [dm6]	C	T	4.906e^-4	1	UPSTREAM Pex7 & 1 other INTRON Pex7
3L	8642304	3L_8642304_SNP [dm3] 3L_8649204_SNP [dm6]	T	C	4.906e^-4	1	UPSTREAM Pex7 & 1 other INTRON Pex7
3L	8642333	3L_8642333_SNP [dm3] 3L_8649233_SNP [dm6]	T	C	4.906e^-4	1	UPSTREAM Pex7 & 1 other INTRON Pex7
3L	19263504	3L_19263504_SNP [dm3] 3L_19270404_SNP [dm6]	A	G	4.914e^-4	1	NON_SYNONYMOUS_CODING CG14088 INTRON CG14085	TF binding site mE1_TFBS_cad
3R	4826867	3R_4826867_SNP [dm3] 3R_9001145_SNP [dm6]	T	G	4.918e^-4	1	INTRON CG31100
X	9200484	X_9200484_SNP [dm3] X_9306451_SNP [dm6]	A	C	4.919e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13227981	2L_13227981_SNP [dm3] 2L_13227981_SNP [dm6]	G	T	4.935e^-4	1	NON_SYNONYMOUS_CODING CG16813	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13717819	2R_13717819_SNP [dm3] 2R_17830314_SNP [dm6]	T	A	4.948e^-4	1	INTRON grh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
3L	4514376	3L_4514376_SNP [dm3] 3L_4514376_SNP [dm6]	G	A	4.978e^-4	1	NON_SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_chinmo
3L	8642389	3L_8642389_SNP [dm3] 3L_8649289_SNP [dm6]	C	A	4.980e^-4	1	UPSTREAM Pex7 & 1 other INTRON Pex7
2L	12648439	2L_12648439_SNP [dm3] 2L_12648439_SNP [dm6]	A	T	4.980e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	21952947	3R_21952947_SNP [dm3] 3R_26127225_SNP [dm6]	T	A	4.993e^-4	1	NON_SYNONYMOUS_CODING CG14556 INTRON CG31324	TF binding site mE1_TFBS_HSA
3R	20788785	3R_20788785_SNP [dm3] 3R_24963063_SNP [dm6]	T	G	5.001e^-4	1	INTERGENIC
X	2918638	X_2918638_SNP [dm3] X_3024605_SNP [dm6]	T	C	5.003e^-4	1	INTRON kirre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3655903	X_3655903_SNP [dm3] X_3761870_SNP [dm6]	G	T	5.007e^-4	1	INTRON tlk	TF binding site BDTNP1_TFBS_dl
3L	6495713	3L_6495713_SNP [dm3] 3L_6502613_SNP [dm6]	G	A	5.012e^-4	1	INTRON sfl
3L	8642343	3L_8642343_SNP [dm3] 3L_8649243_SNP [dm6]	C	G	5.023e^-4	1	UPSTREAM Pex7 & 1 other INTRON Pex7
2L	16483779	2L_16483779_SNP [dm3] 2L_16483779_SNP [dm6]	C	G	5.026e^-4	1	INTRON dac	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7615360	2L_7615360_SNP [dm3] 2L_7615360_SNP [dm6]	C	T	5.028e^-4	1	SYNONYMOUS_CODING CG6739
2R	12512918	2R_12512918_SNP [dm3] 2R_16625413_SNP [dm6]	C	T	5.035e^-4	1	UTR_3_PRIME Alk DOWNSTREAM CG5065 & 1 other
X	15202724	X_15202724_SNP [dm3] X_15308691_SNP [dm6]	T	A	5.037e^-4	1	INTRON gce
2R	8114962	2R_8114962_SNP [dm3] 2R_12227457_SNP [dm6]	C	T	5.060e^-4	1	UPSTREAM CG8854 INTRON CG8854
X	5531242	X_5531242_SNP [dm3] X_5637209_SNP [dm6]	T	C	5.078e^-4	1	INTRON CG42492	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10361908	3L_10361908_SNP [dm3] 3L_10368808_SNP [dm6]	G	T	5.087e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	1115704	3L_1115704_SNP [dm3] 3L_1115704_SNP [dm6]	T	G	5.091e^-4	1	INTERGENIC
3R	2749710	3R_2749710_SNP [dm3] 3R_6923988_SNP [dm6]	G	A	5.093e^-4	1	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4730485	X_4730485_SNP [dm3] X_4836452_SNP [dm6]	T	C	5.094e^-4	1	INTERGENIC
2L	3434945	2L_3434945_SNP [dm3] 2L_3434945_SNP [dm6]	C	G	5.103e^-4	1	INTERGENIC
2R	20050914	2R_20050914_SNP [dm3] 2R_24163391_SNP [dm6]	A	G	5.103e^-4	1	INTRON CG3328
X	17244551	X_17244551_SNP [dm3] X_17350518_SNP [dm6]	T	C	5.112e^-4	1	INTERGENIC
3L	6889961	3L_6889961_SNP [dm3] 3L_6896861_SNP [dm6]	A	G	5.117e^-4	1	INTERGENIC
3R	20841522	3R_20841522_SNP [dm3] 3R_25015800_SNP [dm6]	T	C	5.128e^-4	1	SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12476633	3L_12476633_SNP [dm3] 3L_12483533_SNP [dm6]	G	C	5.130e^-4	1	INTRON CG10663 & 1 other
3R	21335719	3R_21335719_SNP [dm3] 3R_25509997_SNP [dm6]	G	C	5.139e^-4	1	INTERGENIC
2R	10018203	2R_10018203_SNP [dm3] 2R_14130698_SNP [dm6]	T	A	5.141e^-4	1	INTRON Prosap
X	18930536	X_18930536_SNP [dm3] X_19036503_SNP [dm6]	G	T	5.141e^-4	1	INTERGENIC
3R	27572019	3R_27572019_SNP [dm3] 3R_31746297_SNP [dm6]	T	C	5.146e^-4	1	UPSTREAM awd DOWNSTREAM nero INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	17366968	2L_17366968_SNP [dm3] 2L_17366968_SNP [dm6]	C	T	5.154e^-4	1	DOWNSTREAM Lrch INTERGENIC
2R	16595653	2R_16595653_SNP [dm3] 2R_20708148_SNP [dm6]	A	T	5.161e^-4	1	INTRON dpr
X	11161942	X_11161942_SNP [dm3] X_11267909_SNP [dm6]	T	C	5.183e^-4	1	INTRON CG44422
3L	7928432	3L_7928432_SNP [dm3] 3L_7935332_SNP [dm6]	C	A	5.196e^-4	1	INTRON syd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8139390	2R_8139390_SNP [dm3] 2R_12251885_SNP [dm6]	T	A	5.201e^-4	1	INTERGENIC
2R	8140642	2R_8140642_SNP [dm3] 2R_12253137_SNP [dm6]	C	T	5.201e^-4	1	UPSTREAM CG13168 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8140887	2R_8140887_SNP [dm3] 2R_12253382_SNP [dm6]	G	A	5.201e^-4	1	UPSTREAM CG13168 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8142697	2R_8142697_SNP [dm3] 2R_12255192_SNP [dm6]	G	A	5.201e^-4	1	SYNONYMOUS_CODING CG13168
X	5641819	X_5641819_SNP [dm3] X_5747786_SNP [dm6]	A	T	5.201e^-4	1	UTR_5_PRIME CG4078 UPSTREAM IntS6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6284279	2L_6284279_SNP [dm3] 2L_6284279_SNP [dm6]	G	T	5.201e^-4	1	INTRON Ddr	TF binding site mE1_TFBS_cad
3R	7933832	3R_7933832_SNP [dm3] 3R_12108110_SNP [dm6]	T	C	5.211e^-4	1	INTRON dpr17	TF binding site BDTNP1_TFBS_sna
2L	6272090	2L_6272090_SNP [dm3] 2L_6272090_SNP [dm6]	G	A	5.214e^-4	1	DOWNSTREAM CR42735 INTRON Ddr
2L	995130	2L_995130_SNP [dm3] 2L_995130_SNP [dm6]	A	C	5.223e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	20959317	X_20959317_SNP [dm3] X_21088290_SNP [dm6]	G	A	5.224e^-4	1	INTERGENIC
2R	10461291	2R_10461291_SNP [dm3] 2R_14573786_SNP [dm6]	A	C	5.224e^-4	1	INTRON ttv & 1 other
3L	12591666	3L_12591666_SNP [dm3] 3L_12598566_SNP [dm6]	A	T	5.234e^-4	1	INTERGENIC
X	18973941	X_18973941_SNP [dm3] X_19079908_SNP [dm6]	T	C	5.243e^-4	1	INTERGENIC
2L	6272899	2L_6272899_SNP [dm3] 2L_6272899_SNP [dm6]	T	A	5.244e^-4	1	NON_SYNONYMOUS_CODING Ddr
X	12880561	X_12880561_SNP [dm3] X_12986528_SNP [dm6]	G	A	5.249e^-4	1	INTERGENIC
X	14808076	X_14808076_SNP [dm3] X_14914043_SNP [dm6]	C	T	5.257e^-4	1	UPSTREAM CG12398 INTRON Flo2
2L	3496369	2L_3496369_SNP [dm3] 2L_3496369_SNP [dm6]	A	C	5.261e^-4	1	INTRON tim
3L	8319824	3L_8319824_INS [dm3] 3L_8326724_INS [dm6]	T	TTACA	5.264e^-4	1	INTRON CG34461	TF binding site mE1_TFBS_cad
3R	25741872	3R_25741872_SNP [dm3] 3R_29916150_SNP [dm6]	T	C	5.265e^-4	1	SYNONYMOUS_CODING trp UTR_3_PRIME trp	TF binding site mE1_TFBS_chinmo
X	4653866	X_4653866_SNP [dm3] X_4759833_SNP [dm6]	G	T	5.266e^-4	1	INTERGENIC
2L	3528150	2L_3528150_SNP [dm3] 2L_3528150_SNP [dm6]	T	A	5.266e^-4	1	NON_SYNONYMOUS_CODING Spindly DOWNSTREAM CG8852
2L	6258608	2L_6258608_SNP [dm3] 2L_6258608_SNP [dm6]	T	G	5.268e^-4	1	INTRON Ddr
2R	19750283	2R_19750283_SNP [dm3] 2R_23862760_SNP [dm6]	C	G	5.269e^-4	1	UPSTREAM TBPH DOWNSTREAM CG4585 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	12136405	2L_12136405_SNP [dm3] 2L_12136405_SNP [dm6]	G	T	5.270e^-4	1	INTERGENIC
X	4730521	X_4730521_SNP [dm3] X_4836488_SNP [dm6]	A	T	5.271e^-4	1	INTERGENIC
2L	10891330	2L_10891330_SNP [dm3] 2L_10891330_SNP [dm6]	C	T	5.274e^-4	1	INTERGENIC
X	17244550	X_17244550_SNP [dm3] X_17350517_SNP [dm6]	T	G	5.298e^-4	1	INTERGENIC
3L	2575200	3L_2575200_SNP [dm3] 3L_2575200_SNP [dm6]	C	T	5.313e^-4	1	INTRON msn
2R	16041544	2R_16041544_SNP [dm3] 2R_20154039_SNP [dm6]	A	G	5.318e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14398622	2R_14398622_SNP [dm3] 2R_18511117_SNP [dm6]	T	A	5.327e^-4	1	INTERGENIC
2R	19483502	2R_19483502_SNP [dm3] 2R_23595979_SNP [dm6]	C	T	5.335e^-4	1	UPSTREAM apt INTRON apt
2L	9122268	2L_9122268_SNP [dm3] 2L_9122268_SNP [dm6]	G	T	5.338e^-4	1	UPSTREAM CR44616 INTERGENIC
2R	4525356	2R_4525356_SNP [dm3] 2R_8637851_SNP [dm6]	A	T	5.344e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12157803	2L_12157803_SNP [dm3] 2L_12157803_SNP [dm6]	T	A	5.344e^-4	1	INTRON CG31760
2R	12513859	2R_12513859_SNP [dm3] 2R_16626354_SNP [dm6]	G	C	5.345e^-4	1	UTR_3_PRIME Alk
2R	17515786	2R_17515786_SNP [dm3] 2R_21628281_SNP [dm6]	C	T	5.363e^-4	1	SYNONYMOUS_CODING mahj	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14583462	2R_14583462_SNP [dm3] 2R_18695957_SNP [dm6]	A	T	5.365e^-4	1	UPSTREAM CG15071 INTRON Sik3	TF binding site BDTNP1_TFBS_dl
3L	7384975	3L_7384975_SNP [dm3] 3L_7391875_SNP [dm6]	G	A	5.368e^-4	1	INTRON CG8563
3L	968706	3L_968706_SNP [dm3] 3L_968706_SNP [dm6]	G	T	5.372e^-4	1	INTRON Glut1
2L	8694642	2L_8694642_SNP [dm3] 2L_8694642_SNP [dm6]	A	G	5.378e^-4	1	INTRON Hnf4
2R	14696309	2R_14696309_SNP [dm3] 2R_18808804_SNP [dm6]	G	T	5.384e^-4	1	INTRON CG15096	TF binding site mE1_TFBS_chinmo
2L	1729203	2L_1729203_SNP [dm3] 2L_1729203_SNP [dm6]	A	C	5.411e^-4	1	SYNONYMOUS_CODING Rrp40 UPSTREAM Eno & 1 other INTRON Eno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6540783	2R_6540783_SNP [dm3] 2R_10653278_SNP [dm6]	T	A	5.421e^-4	1	INTERGENIC
2L	1729260	2L_1729260_SNP [dm3] 2L_1729260_SNP [dm6]	A	G	5.432e^-4	1	SYNONYMOUS_CODING Rrp40 UPSTREAM Eno & 1 other INTRON Eno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18395060	3R_18395060_SNP [dm3] 3R_22569338_SNP [dm6]	G	A	5.433e^-4	1	UPSTREAM CG33110 INTERGENIC
3L	2610536	3L_2610536_SNP [dm3] 3L_2610536_SNP [dm6]	A	T	5.441e^-4	1	NON_SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3560782	2L_3560782_SNP [dm3] 2L_3560782_SNP [dm6]	C	A	5.442e^-4	1	INTERGENIC
X	9200486	X_9200486_SNP [dm3] X_9306453_SNP [dm6]	C	T	5.451e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	18614299	2L_18614299_SNP [dm3] 2L_18614299_SNP [dm6]	C	G	5.459e^-4	1	DOWNSTREAM CG15161 INTERGENIC
2R	14720533	2R_14720533_SNP [dm3] 2R_18833028_SNP [dm6]	C	A	5.466e^-4	1	SYNONYMOUS_CODING CG15082 DOWNSTREAM CG15098
3R	20788312	3R_20788312_SNP [dm3] 3R_24962590_SNP [dm6]	G	T	5.476e^-4	1	INTERGENIC
2R	18880386	2R_18880386_SNP [dm3] 2R_22992863_SNP [dm6]	T	C	5.482e^-4	1	DOWNSTREAM CG9896 INTRON twi
3R	15202955	3R_15202955_SNP [dm3] 3R_19377233_SNP [dm6]	T	C	5.483e^-4	1	UPSTREAM CG31245 INTRON Ino80
2R	19563938	2R_19563938_SNP [dm3] 2R_23676415_SNP [dm6]	C	A	5.485e^-4	1	UPSTREAM Pde8 INTRON Pde8
2L	11422846	2L_11422846_SNP [dm3] 2L_11422846_SNP [dm6]	T	A	5.494e^-4	1	INTERGENIC
2R	18612028	2R_18612028_SNP [dm3] 2R_22724523_SNP [dm6]	C	G	5.497e^-4	1	SPLICE_SITE_REGION jbug INTRON jbug	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
X	13337687	X_13337687_SNP [dm3] X_13443654_SNP [dm6]	G	A	5.498e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	5902388	3L_5902388_SNP [dm3] 3L_5909288_SNP [dm6]	A	G	5.502e^-4	1	NON_SYNONYMOUS_CODING CG13288
3R	13465491	3R_13465491_SNP [dm3] 3R_17639769_SNP [dm6]	G	A	5.506e^-4	1	DOWNSTREAM CR45222 INTRON CG43175
X	5267036	X_5267036_SNP [dm3] X_5373003_SNP [dm6]	C	G	5.513e^-4	1	INTRON SK
3L	10599374	3L_10599374_SNP [dm3] 3L_10606274_SNP [dm6]	T	G	5.520e^-4	1	INTERGENIC
3L	12591604	3L_12591604_SNP [dm3] 3L_12598504_SNP [dm6]	G	A	5.524e^-4	1	INTERGENIC
2R	8113922	2R_8113922_SNP [dm3] 2R_12226417_SNP [dm6]	T	C	5.533e^-4	1	UTR_5_PRIME CG8854 INTRON CG8854	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11399094	2R_11399094_SNP [dm3] 2R_15511589_SNP [dm6]	T	A	5.543e^-4	1	UPSTREAM GalNAc-T1 INTERGENIC
3L	14158829	3L_14158829_SNP [dm3] 3L_14165729_SNP [dm6]	G	A	5.546e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19070404	2R_19070404_SNP [dm3] 2R_23182881_SNP [dm6]	A	C	5.556e^-4	1	INTRON CG34371
X	15992011	X_15992011_SNP [dm3] X_16097978_SNP [dm6]	A	G	5.560e^-4	1	SYNONYMOUS_CODING CG42353 UTR_5_PRIME CG42354	TF binding site mE1_TFBS_sens
2L	3328248	2L_3328248_SNP [dm3] 2L_3328248_SNP [dm6]	G	A	5.564e^-4	1	SYNONYMOUS_CODING CG33282
X	19233626	X_19233626_SNP [dm3] X_19339593_SNP [dm6]	A	G	5.572e^-4	1	INTRON nAChRalpha7
2L	12671973	2L_12671973_SNP [dm3] 2L_12671973_SNP [dm6]	G	A	5.584e^-4	1	INTRON pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3R	19133296	3R_19133296_SNP [dm3] 3R_23307574_SNP [dm6]	C	T	5.609e^-4	1	INTRON pnt
3L	21350945	3L_21350945_SNP [dm3] 3L_21357845_SNP [dm6]	C	G	5.614e^-4	1	UTR_5_PRIME CG32437
X	13040642	X_13040642_SNP [dm3] X_13146609_SNP [dm6]	T	C	5.617e^-4	1	INTRON CG32645
2L	2952542	2L_2952542_DEL [dm3] 2L_2952542_DEL [dm6]	CTCAATTT	C	5.621e^-4	1	UTR_3_PRIME lilli DOWNSTREAM lilli
3L	3533842	3L_3533842_SNP [dm3] 3L_3533842_SNP [dm6]	T	A	5.633e^-4	1	INTRON Eip63E
2L	9487363	2L_9487363_SNP [dm3] 2L_9487363_SNP [dm6]	T	A	5.638e^-4	1	INTERGENIC
X	3334368	X_3334368_INS [dm3] X_3440335_INS [dm6]	A	ATA	5.678e^-4	1	UPSTREAM CG12535 INTRON CR44999 & 1 other
2R	16055258	2R_16055258_SNP [dm3] 2R_20167753_SNP [dm6]	G	T	5.680e^-4	1	INTERGENIC
2R	14720648	2R_14720648_SNP [dm3] 2R_18833143_SNP [dm6]	G	A	5.692e^-4	1	UTR_3_PRIME CG15082 DOWNSTREAM CG15098
2L	6280607	2L_6280607_SNP [dm3] 2L_6280607_SNP [dm6]	G	C	5.702e^-4	1	INTRON Ddr
3R	25220550	3R_25220550_SNP [dm3] 3R_29394828_SNP [dm6]	A	T	5.703e^-4	1	INTRON Ptp99A
3L	4518109	3L_4518109_SNP [dm3] 3L_4518109_SNP [dm6]	C	A	5.709e^-4	1	INTRON Tie
3L	5889130	3L_5889130_SNP [dm3] 3L_5896030_SNP [dm6]	G	A	5.712e^-4	1	SYNONYMOUS_CODING Pole2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	11614288	3R_11614288_SNP [dm3] 3R_15788566_SNP [dm6]	C	T	5.718e^-4	1	UTR_5_PRIME CG9589 DOWNSTREAM CG9590 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12434445	2R_12434445_SNP [dm3] 2R_16546940_SNP [dm6]	T	G	5.718e^-4	1	INTERGENIC
2R	10843227	2R_10843227_DEL [dm3] 2R_14955722_DEL [dm6]	TCAATTTGTTACATGATTAA...	T	5.725e^-4	1	INTRON aPKC	TF binding site mE1_TFBS_HSA
3R	8380847	3R_8380847_SNP [dm3] 3R_12555125_SNP [dm6]	A	T	5.741e^-4	1	INTRON Octbeta2R
2R	19665850	2R_19665850_DEL [dm3] 2R_23778327_DEL [dm6]	TT	T	5.743e^-4	1	INTRON CG9850
3L	1675730	3L_1675730_SNP [dm3] 3L_1675730_SNP [dm6]	A	G	5.748e^-4	1	INTRON CG7991	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19562746	2R_19562746_SNP [dm3] 2R_23675223_SNP [dm6]	G	C	5.748e^-4	1	INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11098621	2L_11098621_SNP [dm3] 2L_11098621_SNP [dm6]	A	C	5.759e^-4	1	SYNONYMOUS_CODING Ge-1	TF binding site mE1_TFBS_cad
X	15861539	X_15861539_SNP [dm3] X_15967506_SNP [dm6]	T	A	5.779e^-4	1	INTRON mmd
2L	6258745	2L_6258745_SNP [dm3] 2L_6258745_SNP [dm6]	T	C	5.781e^-4	1	INTRON Ddr
3L	18030751	3L_18030751_INS [dm3] 3L_18037651_INS [dm6]	C	ACTGATTAAGTA...	5.787e^-4	1	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5017989	X_5017989_SNP [dm3] X_5123956_SNP [dm6]	T	A	5.793e^-4	1	INTRON rg & 1 other
X	4654072	X_4654072_SNP [dm3] X_4760039_SNP [dm6]	A	G	5.799e^-4	1	INTERGENIC
2R	6557015	2R_6557015_DEL [dm3] 2R_10669510_DEL [dm6]	AA	A	5.809e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
X	13826240	X_13826240_INS [dm3] X_13932207_INS [dm6]	C	CTC	5.814e^-4	1	INTRON mamo
2L	7611702	2L_7611702_SNP [dm3] 2L_7611702_SNP [dm6]	A	T	5.827e^-4	1	INTRON CG6739	TF binding site BDTNP1_TFBS_twi
X	14757022	X_14757022_SNP [dm3] X_14862989_SNP [dm6]	C	T	5.840e^-4	1	UTR_3_PRIME CG9518 INTRON Flo2
3L	1866723	3L_1866723_SNP [dm3] 3L_1866723_SNP [dm6]	C	G	5.840e^-4	1	INTRON CG12025	TF binding site mE1_TFBS_cad
3R	8755108	3R_8755108_SNP [dm3] 3R_12929386_SNP [dm6]	C	A	5.845e^-4	1	INTRON beat-Vb
2L	6295542	2L_6295542_SNP [dm3] 2L_6295542_SNP [dm6]	G	T	5.848e^-4	1	INTRON Ddr
2R	8529176	2R_8529176_SNP [dm3] 2R_12641671_SNP [dm6]	A	T	5.878e^-4	1	SYNONYMOUS_CODING CG8785	TF binding site mE1_TFBS_cad
2R	19666694	2R_19666694_SNP [dm3] 2R_23779171_SNP [dm6]	T	C	5.879e^-4	1	INTRON CG9850
2R	15249453	2R_15249453_SNP [dm3] 2R_19361948_SNP [dm6]	G	C	5.879e^-4	1	INTRON CG11961
3L	11383501	3L_11383501_SNP [dm3] 3L_11390401_SNP [dm6]	C	T	5.880e^-4	1	INTERGENIC
3L	11383503	3L_11383503_SNP [dm3] 3L_11390403_SNP [dm6]	T	C	5.880e^-4	1	INTERGENIC
2L	6474195	2L_6474195_INS [dm3] 2L_6474195_INS [dm6]	T	TGAGTT	5.892e^-4	1	UPSTREAM mmy DOWNSTREAM CG9536 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11383479	3L_11383479_DEL [dm3] 3L_11390379_DEL [dm6]	AGATTTGATTATA...	A	5.892e^-4	1	INTERGENIC
3L	8319788	3L_8319788_SNP [dm3] 3L_8326688_SNP [dm6]	G	T	5.897e^-4	1	INTRON CG34461	TF binding site mE1_TFBS_cad
3R	14912851	3R_14912851_SNP [dm3] 3R_19087129_SNP [dm6]	C	A	5.903e^-4	1	INTRON cdi	TF binding site mE1_TFBS_chinmo
3L	15163459	3L_15163459_SNP [dm3] 3L_15170359_SNP [dm6]	C	G	5.904e^-4	1	INTERGENIC
2L	7608191	2L_7608191_SNP [dm3] 2L_7608191_SNP [dm6]	T	C	5.908e^-4	1	UPSTREAM CG6739 DOWNSTREAM Cyp4d21 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6281240	3L_6281240_SNP [dm3] 3L_6288140_SNP [dm6]	T	A	5.908e^-4	1	INTERGENIC
2L	12038772	2L_12038772_SNP [dm3] 2L_12038772_SNP [dm6]	A	G	5.908e^-4	1	UTR_3_PRIME CG6766 UPSTREAM Tom70	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4528749	2L_4528749_SNP [dm3] 2L_4528749_SNP [dm6]	G	C	5.916e^-4	1	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	7499028	3L_7499028_SNP [dm3] 3L_7505928_SNP [dm6]	T	G	5.917e^-4	1	NON_SYNONYMOUS_CODING CG7548	TF binding site mE1_TFBS_cad
3R	12033172	3R_12033172_SNP [dm3] 3R_16207450_SNP [dm6]	C	T	5.918e^-4	1	DOWNSTREAM CR45639 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3L	16075511	3L_16075511_SNP [dm3] 3L_16082411_SNP [dm6]	T	A	5.926e^-4	1	UPSTREAM CG33258 DOWNSTREAM Mbs INTERGENIC
2L	11423340	2L_11423340_INS [dm3] 2L_11423340_INS [dm6]	A	ACA	5.933e^-4	1	INTERGENIC
2R	14124951	2R_14124951_SNP [dm3] 2R_18237446_SNP [dm6]	C	A	5.936e^-4	1	INTERGENIC
X	12091814	X_12091814_SNP [dm3] X_12197781_SNP [dm6]	A	T	5.938e^-4	1	INTRON Ten-a
X	16310603	X_16310603_SNP [dm3] X_16416570_SNP [dm6]	A	T	5.951e^-4	1	SPLICE_SITE_REGION Traf-like DOWNSTREAM AnxB11 INTRON Traf-like
X	9168542	X_9168542_SNP [dm3] X_9274509_SNP [dm6]	G	T	5.959e^-4	1	SYNONYMOUS_CODING CG16892 UPSTREAM snoRNA:CG16892-a DOWNSTREAM c11.1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	16846554	2L_16846554_SNP [dm3] 2L_16846554_SNP [dm6]	A	C	5.962e^-4	1	INTRON CG13284	TF binding site mE1_TFBS_Trl
X	9914968	X_9914968_DEL [dm3] X_10020935_DEL [dm6]	TTCAT	T	5.962e^-4	1	INTRON Cht6
X	18862549	X_18862549_SNP [dm3] X_18968516_SNP [dm6]	C	T	5.965e^-4	1	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	10896788	3L_10896788_SNP [dm3] 3L_10903688_SNP [dm6]	A	C	5.972e^-4	1	INTERGENIC
3L	6280728	3L_6280728_SNP [dm3] 3L_6287628_SNP [dm6]	C	T	5.973e^-4	1	INTERGENIC
3L	6292049	3L_6292049_SNP [dm3] 3L_6298949_SNP [dm6]	T	A	5.994e^-4	1	INTERGENIC
2L	12604175	2L_12604175_SNP [dm3] 2L_12604175_SNP [dm6]	T	A	5.995e^-4	1	INTRON nub
3R	15116149	3R_15116149_SNP [dm3] 3R_19290427_SNP [dm6]	G	A	6.002e^-4	1	INTERGENIC
2L	3227777	2L_3227777_INS [dm3] 2L_3227777_INS [dm6]	C	CAT	6.018e^-4	1	INTERGENIC
2L	3618136	2L_3618136_SNP [dm3] 2L_3618136_SNP [dm6]	A	G	6.024e^-4	1	UPSTREAM Dot DOWNSTREAM CR44310 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	14115477	3R_14115477_SNP [dm3] 3R_18289755_SNP [dm6]	A	T	6.034e^-4	1	UPSTREAM CG7131 INTRON l_3_05822	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14779639	2R_14779639_SNP [dm3] 2R_18892134_SNP [dm6]	A	T	6.054e^-4	1	INTRON sano
2R	14779641	2R_14779641_SNP [dm3] 2R_18892136_SNP [dm6]	A	T	6.054e^-4	1	INTRON sano
X	18185884	X_18185884_SNP [dm3] X_18291851_SNP [dm6]	A	G	6.057e^-4	1	UPSTREAM CR15061 INTERGENIC
X	18185860	X_18185860_SNP [dm3] X_18291827_SNP [dm6]	G	A	6.070e^-4	1	UPSTREAM CR15061 INTERGENIC
2L	9127037	2L_9127037_SNP [dm3] 2L_9127037_SNP [dm6]	A	C	6.079e^-4	1	SYNONYMOUS_CODING CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
2L	4903769	2L_4903769_SNP [dm3] 2L_4903769_SNP [dm6]	G	A	6.079e^-4	1	UTR_3_PRIME CG3036 DOWNSTREAM CG2837 & 1 other
3L	7427831	3L_7427831_SNP [dm3] 3L_7434731_SNP [dm6]	T	C	6.082e^-4	1	START_GAINED Rac2 UTR_5_PRIME Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6445823	X_6445823_SNP [dm3] X_6551790_SNP [dm6]	G	A	6.089e^-4	1	INTRON CG34417	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11999003	3L_11999003_SNP [dm3] 3L_12005903_SNP [dm6]	T	C	6.100e^-4	1	INTRON CG6928
3L	18838188	3L_18838188_SNP [dm3] 3L_18845088_SNP [dm6]	A	G	6.100e^-4	1	INTRON Indy	TF binding site BDTNP1_TFBS_dl
3L	4604054	3L_4604054_SNP [dm3] 3L_4604054_SNP [dm6]	A	G	6.102e^-4	1	INTRON Src64B
X	6491646	X_6491646_SNP [dm3] X_6597613_SNP [dm6]	A	G	6.108e^-4	1	SYNONYMOUS_CODING APC7 DOWNSTREAM Pat1	TF binding site BDTNP1_TFBS_twi
2R	20265772	2R_20265772_SNP [dm3] 2R_24378249_SNP [dm6]	C	T	6.118e^-4	1	SPLICE_SITE_REGION CG13578 SYNONYMOUS_CODING CG13578 DOWNSTREAM mAChR-A	TF binding site mE1_TFBS_chinmo
3R	11614075	3R_11614075_SNP [dm3] 3R_15788353_SNP [dm6]	G	A	6.129e^-4	1	UPSTREAM CG9589 DOWNSTREAM CG9590 INTERGENIC
2R	8141689	2R_8141689_INS [dm3] 2R_12254184_INS [dm6]	A	ATAAATAATA	6.143e^-4	1	UTR_5_PRIME CG13168
2L	16634084	2L_16634084_SNP [dm3] 2L_16634084_SNP [dm6]	T	G	6.146e^-4	1	INTRON CG42389
2L	4319510	2L_4319510_SNP [dm3] 2L_4319510_SNP [dm6]	C	T	6.159e^-4	1	SYNONYMOUS_CODING tutl UTR_3_PRIME tutl DOWNSTREAM tutl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7357816	2L_7357816_SNP [dm3] 2L_7357816_SNP [dm6]	A	G	6.163e^-4	1	INTERGENIC
2R	15257029	2R_15257029_SNP [dm3] 2R_19369524_SNP [dm6]	T	C	6.167e^-4	1	SYNONYMOUS_CODING CG9416
2R	1404344	2R_1404344_SNP [dm3] 2R_5516839_SNP [dm6]	T	C	6.172e^-4	1	INTRON CG30438	transposable element FlyBase
3L	9535355	3L_9535355_SNP [dm3] 3L_9542255_SNP [dm6]	C	G	6.181e^-4	1	NON_SYNONYMOUS_CODING Ir67a
2L	7259906	2L_7259906_SNP [dm3] 2L_7259906_SNP [dm6]	G	A	6.181e^-4	1	INTRON Wnt4
2R	19563974	2R_19563974_SNP [dm3] 2R_23676451_SNP [dm6]	C	A	6.186e^-4	1	UPSTREAM Pde8 INTRON Pde8
3L	3532175	3L_3532175_SNP [dm3] 3L_3532175_SNP [dm6]	G	C	6.186e^-4	1	INTRON Eip63E
2R	20228442	2R_20228442_SNP [dm3] 2R_24340919_SNP [dm6]	T	A	6.193e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
X	3661461	X_3661461_SNP [dm3] X_3767428_SNP [dm6]	C	T	6.194e^-4	1	INTRON tlk
3R	13378084	3R_13378084_SNP [dm3] 3R_17552362_SNP [dm6]	G	A	6.197e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	12538737	2R_12538737_SNP [dm3] 2R_16651232_SNP [dm6]	G	A	6.215e^-4	1	SYNONYMOUS_CODING Amyrel DOWNSTREAM gprs	TF binding site mE1_TFBS_cad
2L	6529378	2L_6529378_SNP [dm3] 2L_6529378_SNP [dm6]	C	A	6.235e^-4	1	SYNONYMOUS_CODING eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3013273	X_3013273_SNP [dm3] X_3119240_SNP [dm6]	G	T	6.246e^-4	1	INTRON kirre
2L	883471	2L_883471_SNP [dm3] 2L_883471_SNP [dm6]	A	T	6.256e^-4	1	SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11287484	3R_11287484_SNP [dm3] 3R_15461762_SNP [dm6]	G	T	6.263e^-4	1	UPSTREAM AdamTS-A INTRON AdamTS-A
2L	17570219	2L_17570219_SNP [dm3] 2L_17570219_SNP [dm6]	T	A	6.267e^-4	1	INTERGENIC
2R	19834952	2R_19834952_SNP [dm3] 2R_23947429_SNP [dm6]	T	C	6.272e^-4	1	DOWNSTREAM CG13565 & 1 other INTRON CG13565
X	20958998	X_20958998_SNP [dm3] X_21087971_SNP [dm6]	C	G	6.276e^-4	1	INTERGENIC
3L	9535014	3L_9535014_SNP [dm3] 3L_9541914_SNP [dm6]	G	A	6.279e^-4	1	DOWNSTREAM Ir67a INTERGENIC
3R	11861597	3R_11861597_INS [dm3] 3R_16035875_INS [dm6]	G	GG	6.296e^-4	1	INTRON pnr
2L	18515109	2L_18515109_SNP [dm3] 2L_18515109_SNP [dm6]	C	A	6.305e^-4	1	INTERGENIC
3L	16920460	3L_16920460_SNP [dm3] 3L_16927360_SNP [dm6]	A	T	6.316e^-4	1	UTR_5_PRIME CG13023
X	16148944	X_16148944_SNP [dm3] X_16254911_SNP [dm6]	T	C	6.321e^-4	1	UPSTREAM snRNA:U5:14B DOWNSTREAM snRNA:U2:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11168670	2L_11168670_SNP [dm3] 2L_11168670_SNP [dm6]	A	T	6.329e^-4	1	UPSTREAM Ca-beta INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	16992737	2R_16992737_SNP [dm3] 2R_21105232_SNP [dm6]	A	G	6.334e^-4	1	INTRON ktub	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14779260	2R_14779260_INS [dm3] 2R_18891755_INS [dm6]	A	ATTTA	6.344e^-4	1	INTRON sano
2L	21297955	2L_21297955_SNP [dm3] 2L_21297955_SNP [dm6]	C	A	6.345e^-4	1	DOWNSTREAM Gr39a INTRON Mio
2L	16230032	2L_16230032_SNP [dm3] 2L_16230032_SNP [dm6]	C	T	6.359e^-4	1	INTERGENIC
2L	1274730	2L_1274730_SNP [dm3] 2L_1274730_SNP [dm6]	T	C	6.378e^-4	1	INTRON robo3
3L	8705393	3L_8705393_SNP [dm3] 3L_8712293_SNP [dm6]	G	T	6.383e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
X	3658756	X_3658756_INS [dm3] X_3764723_INS [dm6]	G	GCAA	6.383e^-4	1	INTRON tlk
2R	11394975	2R_11394975_SNP [dm3] 2R_15507470_SNP [dm6]	G	C	6.392e^-4	1	NON_SYNONYMOUS_CODING Ir52d	TF binding site mE1_TFBS_HSA
2L	7253244	2L_7253244_SNP [dm3] 2L_7253244_SNP [dm6]	A	G	6.393e^-4	1	UPSTREAM CG13786 INTERGENIC
3R	21033739	3R_21033739_SNP [dm3] 3R_25208017_SNP [dm6]	G	A	6.393e^-4	1	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	12629772	2R_12629772_SNP [dm3] 2R_16742267_SNP [dm6]	G	A	6.398e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8888960	2L_8888960_SNP [dm3] 2L_8888960_SNP [dm6]	T	G	6.398e^-4	1	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
3L	1133426	3L_1133426_SNP [dm3] 3L_1133426_SNP [dm6]	C	G	6.413e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3L	12467035	3L_12467035_SNP [dm3] 3L_12473935_SNP [dm6]	T	C	6.419e^-4	1	SYNONYMOUS_CODING CG10616 DOWNSTREAM CG10663	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4443278	3L_4443278_SNP [dm3] 3L_4443278_SNP [dm6]	A	G	6.422e^-4	1	INTERGENIC
2L	11519830	2L_11519830_DEL [dm3] 2L_11519830_DEL [dm6]	GCGATGAAATAACCCAGATA...	G	6.424e^-4	1	UTR_5_PRIME CG14929 UPSTREAM CG14929 DOWNSTREAM CG14930 & 1 other INTRAGENIC CG14929 INTERGENIC
X	10141989	X_10141989_SNP [dm3] X_10247956_SNP [dm6]	A	T	6.437e^-4	1	INTRON Hk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6284072	2L_6284072_SNP [dm3] 2L_6284072_SNP [dm6]	C	A	6.438e^-4	1	INTRON Ddr
3L	9887889	3L_9887889_SNP [dm3] 3L_9894789_SNP [dm6]	A	G	6.446e^-4	1	UPSTREAM CG6709 & 1 other DOWNSTREAM CG6707 INTERGENIC
3L	11383466	3L_11383466_DEL [dm3] 3L_11390366_DEL [dm6]	TATAA	T	6.449e^-4	1	INTERGENIC
3L	11383474	3L_11383474_SNP [dm3] 3L_11390374_SNP [dm6]	T	C	6.449e^-4	1	INTERGENIC
2R	12440223	2R_12440223_SNP [dm3] 2R_16552718_SNP [dm6]	G	C	6.471e^-4	1	INTRON Syn2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	10843158	2R_10843158_SNP [dm3] 2R_14955653_SNP [dm6]	T	C	6.474e^-4	1	INTRON aPKC	TF binding site mE1_TFBS_HSA
2L	16382073	2L_16382073_SNP [dm3] 2L_16382073_SNP [dm6]	T	A	6.479e^-4	1	INTERGENIC
X	20956828	X_20956828_SNP [dm3] X_21085801_SNP [dm6]	T	C	6.483e^-4	1	INTERGENIC
3R	14579804	3R_14579804_SNP [dm3] 3R_18754082_SNP [dm6]	G	C	6.487e^-4	1	SYNONYMOUS_CODING CG14299
2L	16509340	2L_16509340_SNP [dm3] 2L_16509340_SNP [dm6]	C	T	6.489e^-4	1	UTR_3_PRIME CG5953
2L	18515099	2L_18515099_SNP [dm3] 2L_18515099_SNP [dm6]	G	A	6.490e^-4	1	INTERGENIC
3L	1396439	3L_1396439_SNP [dm3] 3L_1396439_SNP [dm6]	C	T	6.497e^-4	1	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6258437	2L_6258437_SNP [dm3] 2L_6258437_SNP [dm6]	A	G	6.498e^-4	1	INTRON Ddr
3R	16869648	3R_16869648_SNP [dm3] 3R_21043926_SNP [dm6]	A	G	6.507e^-4	1	UPSTREAM CG12278 DOWNSTREAM CG31189 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	20959303	X_20959303_SNP [dm3] X_21088276_SNP [dm6]	A	G	6.507e^-4	1	INTERGENIC
2R	6922823	2R_6922823_SNP [dm3] 2R_11035318_SNP [dm6]	C	T	6.516e^-4	1	INTRON luna
2R	16828997	2R_16828997_INS [dm3] 2R_20941492_INS [dm6]	C	CGATGTGTCGATGTC...	6.521e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8889082	2L_8889082_DEL [dm3] 2L_8889082_DEL [dm6]	GAAC	T	6.529e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2R	18870594	2R_18870594_SNP [dm3] 2R_22983071_SNP [dm6]	G	A	6.532e^-4	1	NON_SYNONYMOUS_CODING CG32834
2R	15302513	2R_15302513_DEL [dm3] 2R_19415008_DEL [dm6]	TT	T	6.540e^-4	1	UPSTREAM tRNA:CR30326 & 1 other DOWNSTREAM tRNA:S4:56D & 1 other INTRON hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20100602	3L_20100602_SNP [dm3] 3L_20107502_SNP [dm6]	A	T	6.544e^-4	1	UTR_3_PRIME CG14185 DOWNSTREAM Ir76b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2918604	X_2918604_SNP [dm3] X_3024571_SNP [dm6]	G	C	6.548e^-4	1	INTRON kirre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7384985	3L_7384985_SNP [dm3] 3L_7391885_SNP [dm6]	G	A	6.553e^-4	1	INTRON CG8563
2L	8283355	2L_8283355_SNP [dm3] 2L_8283355_SNP [dm6]	C	A	6.562e^-4	1	INTRON Btk29A
2R	6230286	2R_6230286_SNP [dm3] 2R_10342781_SNP [dm6]	C	A	6.568e^-4	1	INTRON CG42732
2L	3312469	2L_3312469_SNP [dm3] 2L_3312469_SNP [dm6]	C	T	6.580e^-4	1	DOWNSTREAM CG15406 INTRON CG3277
3R	4044040	3R_4044040_SNP [dm3] 3R_8218318_SNP [dm6]	G	T	6.581e^-4	1	SYNONYMOUS_CODING CG7800	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	4585799	3R_4585799_SNP [dm3] 3R_8760077_SNP [dm6]	G	A	6.582e^-4	1	INTRON CG11768 & 1 other
3L	2540470	3L_2540470_SNP [dm3] 3L_2540470_SNP [dm6]	A	C	6.586e^-4	1	INTRON Spn
2L	20489196	2L_20489196_SNP [dm3] 2L_20489196_SNP [dm6]	A	G	6.598e^-4	1	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	12114672	X_12114672_SNP [dm3] X_12220639_SNP [dm6]	A	G	6.598e^-4	1	INTRON Ten-a
3L	12467056	3L_12467056_SNP [dm3] 3L_12473956_SNP [dm6]	T	G	6.603e^-4	1	NON_SYNONYMOUS_CODING CG10616 DOWNSTREAM CG10663	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8093675	3R_8093675_SNP [dm3] 3R_12267953_SNP [dm6]	T	A	6.605e^-4	1	UPSTREAM CR44039 INTRON svp
2R	16595524	2R_16595524_SNP [dm3] 2R_20708019_SNP [dm6]	A	C	6.605e^-4	1	INTRON dpr	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9582539	2L_9582539_SNP [dm3] 2L_9582539_SNP [dm6]	A	G	6.606e^-4	1	UPSTREAM gcm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
X	6491623	X_6491623_SNP [dm3] X_6597590_SNP [dm6]	A	C	6.618e^-4	1	SYNONYMOUS_CODING APC7 DOWNSTREAM Pat1	TF binding site BDTNP1_TFBS_twi
2L	14372777	2L_14372777_SNP [dm3] 2L_14372777_SNP [dm6]	A	G	6.625e^-4	1	INTERGENIC
2R	20238975	2R_20238975_SNP [dm3] 2R_24351452_SNP [dm6]	A	G	6.640e^-4	1	UPSTREAM CG44812 DOWNSTREAM CR44811 INTRON bs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13265875	2R_13265875_SNP [dm3] 2R_17378370_SNP [dm6]	A	T	6.650e^-4	1	UTR_3_PRIME mbl
2L	10097097	2L_10097097_SNP [dm3] 2L_10097097_SNP [dm6]	G	A	6.650e^-4	1	INTRON CG34109 & 1 other
X	20959527	X_20959527_SNP [dm3] X_21088500_SNP [dm6]	G	T	6.658e^-4	1	INTERGENIC
X	9857730	X_9857730_SNP [dm3] X_9963697_SNP [dm6]	G	T	6.662e^-4	1	INTRON CG1791
X	11920848	X_11920848_SNP [dm3] X_12026815_SNP [dm6]	A	G	6.681e^-4	1	SYNONYMOUS_CODING Usp7	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1330027	2L_1330027_SNP [dm3] 2L_1330027_SNP [dm6]	C	A	6.682e^-4	1	DOWNSTREAM a5 INTERGENIC
3R	16214006	3R_16214006_SNP [dm3] 3R_20388284_SNP [dm6]	C	G	6.682e^-4	1	INTRON Gfrl
2L	16478225	2L_16478225_SNP [dm3] 2L_16478225_SNP [dm6]	T	A	6.699e^-4	1	INTRON dac	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	6503556	2L_6503556_SNP [dm3] 2L_6503556_SNP [dm6]	G	A	6.708e^-4	1	INTRON CG31637	TF binding site mE1_TFBS_Trl
X	5479523	X_5479523_SNP [dm3] X_5585490_SNP [dm6]	C	T	6.716e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21951544	3R_21951544_SNP [dm3] 3R_26125822_SNP [dm6]	A	C	6.722e^-4	1	UPSTREAM CG14556 INTRON CG31324
2L	3617950	2L_3617950_SNP [dm3] 2L_3617950_SNP [dm6]	G	T	6.731e^-4	1	DOWNSTREAM CR44310 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	12881408	X_12881408_SNP [dm3] X_12987375_SNP [dm6]	C	G	6.737e^-4	1	INTERGENIC
2R	11397302	2R_11397302_INS [dm3] 2R_15509797_INS [dm6]	A	AA	6.739e^-4	1	INTERGENIC

By genomic position
Variant impact
Gene name

mn_RespHexanol_3_5 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results