DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.168e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.05904

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.4317	0.064

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1657 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	14077976	X_14077976_SNP [dm3] X_14183943_SNP [dm6]	C	T	6.575e^-7	0.695	UPSTREAM CG32603 DOWNSTREAM CG11584 INTERGENIC
2L	12325115	2L_12325115_SNP [dm3] 2L_12325115_SNP [dm6]	T	C	7.411e^-7	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21486868	3R_21486868_SNP [dm3] 3R_25661146_SNP [dm6]	T	C	1.915e^-6	0.819	UTR_5_PRIME Tnks UPSTREAM RASSF8 DOWNSTREAM CR45208	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21487713	3R_21487713_SNP [dm3] 3R_25661991_SNP [dm6]	C	A	3.044e^-6	0.819	UTR_5_PRIME RASSF8 UPSTREAM Tnks EXON CR45208	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	8149138	X_8149138_SNP [dm3] X_8255105_SNP [dm6]	C	T	3.045e^-6	0.819	INTRON CG1632
2L	12325156	2L_12325156_INS [dm3] 2L_12325156_INS [dm6]	T	TTTATTATATTTTTTTT...	3.058e^-6	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12325168	2L_12325168_DEL [dm3] 2L_12325168_DEL [dm6]	TA	T	3.058e^-6	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1114595	2L_1114595_SNP [dm3] 2L_1114595_SNP [dm6]	G	A	6.441e^-6	1	DOWNSTREAM Pino & 1 other INTERGENIC
3L	9149336	3L_9149336_SNP [dm3] 3L_9156236_SNP [dm6]	C	T	6.473e^-6	1	INTRON Rdl
X	8149077	X_8149077_SNP [dm3] X_8255044_SNP [dm6]	T	A	6.493e^-6	1	INTRON CG1632
3R	21487579	3R_21487579_SNP [dm3] 3R_25661857_SNP [dm6]	A	T	7.481e^-6	1	UTR_5_PRIME RASSF8 UPSTREAM Tnks EXON CR45208	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	8149460	X_8149460_INS [dm3] X_8255427_INS [dm6]	T	TT	8.166e^-6	1	INTRON CG1632
X	8149070	X_8149070_SNP [dm3] X_8255037_SNP [dm6]	G	A	8.276e^-6	1	INTRON CG1632
X	8149084	X_8149084_SNP [dm3] X_8255051_SNP [dm6]	G	C	8.276e^-6	1	INTRON CG1632
3R	21486992	3R_21486992_SNP [dm3] 3R_25661270_SNP [dm6]	G	A	8.613e^-6	1	UTR_5_PRIME Tnks UPSTREAM RASSF8 DOWNSTREAM CR45208	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6339898	2R_6339898_SNP [dm3] 2R_10452393_SNP [dm6]	G	C	8.635e^-6	1	START_GAINED Cyp49a1 UTR_5_PRIME Cyp49a1 INTRON Galphao & 1 other
3L	12801916	3L_12801916_SNP [dm3] 3L_12808816_SNP [dm6]	T	G	1.073e^-5	1	NON_SYNONYMOUS_CODING CG32110 INTRON Sap130
2R	19112289	2R_19112289_INS [dm3] 2R_23224766_INS [dm6]	A	AA	1.088e^-5	1	INTERGENIC
2R	18462794	2R_18462794_SNP [dm3] 2R_22575289_SNP [dm6]	G	A	1.148e^-5	1	INTRON dnr1
X	8926301	X_8926301_SNP [dm3] X_9032268_SNP [dm6]	A	C	1.256e^-5	1	INTRON CR43836 & 1 other
X	19689605	X_19689605_SNP [dm3] X_19795572_SNP [dm6]	A	G	1.294e^-5	1	INTERGENIC
2R	11969585	2R_11969585_SNP [dm3] 2R_16082080_SNP [dm6]	A	G	1.363e^-5	1	UTR_3_PRIME Dg
3R	21140342	3R_21140342_SNP [dm3] 3R_25314620_SNP [dm6]	G	A	1.386e^-5	1	UTR_3_PRIME CG10559 UPSTREAM CG31087
2L	12727406	2L_12727406_SNP [dm3] 2L_12727406_SNP [dm6]	T	G	1.401e^-5	1	INTRON MRP
3L	7590793	3L_7590793_SNP [dm3] 3L_7597693_SNP [dm6]	G	A	1.509e^-5	1	INTRON CG33275
3L	2181159	3L_2181159_SNP [dm3] 3L_2181159_SNP [dm6]	G	T	1.565e^-5	1	INTERGENIC
X	21508771	X_21508771_SNP [dm3] X_21637744_SNP [dm6]	G	C	1.622e^-5	1	INTERGENIC
3L	21051342	3L_21051342_SNP [dm3] 3L_21058242_SNP [dm6]	A	C	1.624e^-5	1	UPSTREAM siz INTRON siz	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
X	13615125	X_13615125_SNP [dm3] X_13721092_SNP [dm6]	C	T	1.850e^-5	1	SYNONYMOUS_CODING CG9941	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12325195	2L_12325195_INS [dm3] 2L_12325195_INS [dm6]	A	ACGTAAAGCAAAATATTTTC...	2.257e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19059846	2R_19059846_DEL [dm3] 2R_23172323_DEL [dm6]	TAGTT	T	2.401e^-5	1	INTRON CG34371	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10737127	2L_10737127_SNP [dm3] 2L_10737127_SNP [dm6]	C	A	2.426e^-5	1	UPSTREAM CG12299 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14077980	X_14077980_SNP [dm3] X_14183947_SNP [dm6]	G	A	2.446e^-5	1	UPSTREAM CG32603 DOWNSTREAM CG11584 INTERGENIC
2R	6489113	2R_6489113_SNP [dm3] 2R_10601608_SNP [dm6]	T	C	2.471e^-5	1	INTRON psq
2L	17489168	2L_17489168_SNP [dm3] 2L_17489168_SNP [dm6]	G	A	2.514e^-5	1	SYNONYMOUS_CODING qua	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7753747	2L_7753747_SNP [dm3] 2L_7753747_SNP [dm6]	T	C	2.683e^-5	1	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
X	21502215	X_21502215_SNP [dm3] X_21631188_SNP [dm6]	G	A	2.904e^-5	1	EXON CR44712	TF binding site BDTNP1_TFBS_dl
3R	3969566	3R_3969566_SNP [dm3] 3R_8143844_SNP [dm6]	G	A	2.928e^-5	1	INTERGENIC
2R	6489087	2R_6489087_SNP [dm3] 2R_10601582_SNP [dm6]	A	T	2.946e^-5	1	INTRON psq
X	8887101	X_8887101_DEL [dm3] X_8993068_DEL [dm6]	CTGC	C	2.973e^-5	1	DOWNSTREAM mir-31b INTRON rdgA & 1 other
3R	4003989	3R_4003989_SNP [dm3] 3R_8178267_SNP [dm6]	A	T	3.020e^-5	1	INTRON grn
2R	6974167	2R_6974167_SNP [dm3] 2R_11086662_SNP [dm6]	C	T	3.078e^-5	1	UTR_5_PRIME CG43189 INTRON luna & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Kr
2L	5913517	2L_5913517_SNP [dm3] 2L_5913517_SNP [dm6]	A	G	3.219e^-5	1	INTRON bchs	TF binding site mE1_TFBS_cad
3R	15104319	3R_15104319_SNP [dm3] 3R_19278597_SNP [dm6]	T	G	3.242e^-5	1	DOWNSTREAM CR44173 INTERGENIC
2L	3266141	2L_3266141_SNP [dm3] 2L_3266141_SNP [dm6]	A	G	3.323e^-5	1	UPSTREAM CR45706 INTERGENIC
3L	18147749	3L_18147749_SNP [dm3] 3L_18154649_SNP [dm6]	T	A	3.364e^-5	1	DOWNSTREAM CG7330 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6913393	3L_6913393_SNP [dm3] 3L_6920293_SNP [dm6]	C	G	3.497e^-5	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6486490	2R_6486490_SNP [dm3] 2R_10598985_SNP [dm6]	T	C	3.552e^-5	1	INTRON psq
X	3180976	X_3180976_DEL [dm3] X_3286943_DEL [dm6]	TG	T	3.676e^-5	1	INTRON dnc
X	21508680	X_21508680_SNP [dm3] X_21637653_SNP [dm6]	T	C	3.734e^-5	1	INTERGENIC	transposable element FlyBase
3L	2893109	3L_2893109_SNP [dm3] 3L_2893109_SNP [dm6]	T	A	3.741e^-5	1	UPSTREAM spz5 INTERGENIC
X	14078100	X_14078100_SNP [dm3] X_14184067_SNP [dm6]	G	C	3.756e^-5	1	UPSTREAM CG32603 DOWNSTREAM CG11584 INTERGENIC
2L	9299112	2L_9299112_SNP [dm3] 2L_9299112_SNP [dm6]	C	A	3.791e^-5	1	UTR_3_PRIME Ggamma30A
2L	5913525	2L_5913525_SNP [dm3] 2L_5913525_SNP [dm6]	A	T	3.859e^-5	1	INTRON bchs	TF binding site mE1_TFBS_cad
3L	18272201	3L_18272201_SNP [dm3] 3L_18279101_SNP [dm6]	C	T	3.865e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
X	21508612	X_21508612_SNP [dm3] X_21637585_SNP [dm6]	T	C	3.990e^-5	1	INTERGENIC	transposable element FlyBase
2L	16391722	2L_16391722_SNP [dm3] 2L_16391722_SNP [dm6]	G	T	4.007e^-5	1	INTERGENIC
3R	21487794	3R_21487794_SNP [dm3] 3R_25662072_SNP [dm6]	T	A	4.139e^-5	1	UTR_5_PRIME RASSF8 UPSTREAM Tnks EXON CR45208	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	9542063	3L_9542063_DEL [dm3] 3L_9548963_DEL [dm6]	ACGTCCA	A	4.204e^-5	1	INTRON CG42673
X	14077808	X_14077808_SNP [dm3] X_14183775_SNP [dm6]	T	C	4.249e^-5	1	UPSTREAM CG32603 DOWNSTREAM CG11584 INTERGENIC
2L	19196864	2L_19196864_SNP [dm3] 2L_19196864_SNP [dm6]	A	G	4.269e^-5	1	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21487866	3R_21487866_SNP [dm3] 3R_25662144_SNP [dm6]	A	G	4.291e^-5	1	UTR_5_PRIME RASSF8 UPSTREAM Tnks EXON CR45208	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17624937	2R_17624937_SNP [dm3] 2R_21737432_SNP [dm6]	A	T	4.386e^-5	1	INTERGENIC
2R	6489095	2R_6489095_SNP [dm3] 2R_10601590_SNP [dm6]	C	T	4.405e^-5	1	INTRON psq
X	19689559	X_19689559_SNP [dm3] X_19795526_SNP [dm6]	A	G	4.418e^-5	1	INTERGENIC
3R	3969110	3R_3969110_SNP [dm3] 3R_8143388_SNP [dm6]	T	C	4.474e^-5	1	INTERGENIC
X	18069222	X_18069222_SNP [dm3] X_18175189_SNP [dm6]	T	G	4.656e^-5	1	DOWNSTREAM Frq1 INTERGENIC
2L	9884653	2L_9884653_SNP [dm3] 2L_9884653_SNP [dm6]	C	T	4.686e^-5	1	INTRON nAChRalpha6
X	14077858	X_14077858_SNP [dm3] X_14183825_SNP [dm6]	A	G	4.762e^-5	1	UPSTREAM CG32603 DOWNSTREAM CG11584 INTERGENIC
2R	5909818	2R_5909818_SNP [dm3] 2R_10022313_SNP [dm6]	G	T	4.765e^-5	1	INTRON Pka-R2
2L	19937707	2L_19937707_SNP [dm3] 2L_19937707_SNP [dm6]	C	A	4.850e^-5	1	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19113933	2R_19113933_SNP [dm3] 2R_23226410_SNP [dm6]	G	A	5.060e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	4327925	X_4327925_SNP [dm3] X_4433892_SNP [dm6]	A	G	5.102e^-5	1	INTRON CR32773 & 1 other
X	3710152	X_3710152_SNP [dm3] X_3816119_SNP [dm6]	C	G	5.176e^-5	1	INTRON ec	TF binding site BDTNP1_TFBS_twi
2R	18734274	2R_18734274_SNP [dm3] 2R_22846751_SNP [dm6]	G	A	5.181e^-5	1	INTRON CG3649	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21501809	X_21501809_SNP [dm3] X_21630782_SNP [dm6]	A	T	5.216e^-5	1	UPSTREAM CR44712 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	10011609	2L_10011609_SNP [dm3] 2L_10011609_SNP [dm6]	C	T	5.267e^-5	1	SPLICE_SITE_REGION Trp1 SYNONYMOUS_CODING Trp1
X	14083949	X_14083949_SNP [dm3] X_14189916_SNP [dm6]	T	C	5.274e^-5	1	NON_SYNONYMOUS_CODING CG11585	TF binding site mE1_TFBS_chinmo
2L	15458136	2L_15458136_SNP [dm3] 2L_15458136_SNP [dm6]	T	G	5.277e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	2846324	2L_2846324_SNP [dm3] 2L_2846324_SNP [dm6]	A	G	5.443e^-5	1	SYNONYMOUS_CODING CG3117 UPSTREAM CG18557
2R	6489096	2R_6489096_SNP [dm3] 2R_10601591_SNP [dm6]	G	A	5.495e^-5	1	INTRON psq
X	6111068	X_6111068_SNP [dm3] X_6217035_SNP [dm6]	A	G	5.559e^-5	1	DOWNSTREAM Btd INTERGENIC
2R	6489093	2R_6489093_INS [dm3] 2R_10601588_INS [dm6]	A	AT	5.759e^-5	1	INTRON psq
3R	3996894	3R_3996894_SNP [dm3] 3R_8171172_SNP [dm6]	C	T	5.814e^-5	1	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	7656461	X_7656461_SNP [dm3] X_7762428_SNP [dm6]	G	C	5.817e^-5	1	INTERGENIC
X	4780305	X_4780305_SNP [dm3] X_4886272_SNP [dm6]	A	G	5.852e^-5	1	INTRON CG42594
3R	10819315	3R_10819315_SNP [dm3] 3R_14993593_SNP [dm6]	A	G	5.878e^-5	1	INTERGENIC	TF binding site mE1_TFBS_Stat92E
3R	11309075	3R_11309075_SNP [dm3] 3R_15483353_SNP [dm6]	C	T	5.925e^-5	1	SYNONYMOUS_CODING Rh6 DOWNSTREAM CG14870	TF binding site mE1_TFBS_chinmo
3R	3969554	3R_3969554_SNP [dm3] 3R_8143832_SNP [dm6]	T	G	5.944e^-5	1	INTERGENIC
2R	6489098	2R_6489098_SNP [dm3] 2R_10601593_SNP [dm6]	A	T	5.994e^-5	1	INTRON psq
X	20641415	X_20641415_SNP [dm3] X_20770388_SNP [dm6]	T	A	6.057e^-5	1	UTR_3_PRIME shakB DOWNSTREAM shakB
2R	9652173	2R_9652173_SNP [dm3] 2R_13764668_SNP [dm6]	T	G	6.116e^-5	1	INTERGENIC
3L	5872434	3L_5872434_SNP [dm3] 3L_5879334_SNP [dm6]	A	T	6.138e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14083426	X_14083426_SNP [dm3] X_14189393_SNP [dm6]	T	C	6.154e^-5	1	UPSTREAM CG11585 INTERGENIC
2R	6489078	2R_6489078_SNP [dm3] 2R_10601573_SNP [dm6]	A	C	6.337e^-5	1	INTRON psq
2R	3046192	2R_3046192_SNP [dm3] 2R_7158687_SNP [dm6]	C	T	6.354e^-5	1	UPSTREAM nec INTRON pk	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	15094736	X_15094736_DEL [dm3] X_15200703_DEL [dm6]	TTAACATAACATTTA...	T	6.426e^-5	1	INTERGENIC
X	4781304	X_4781304_SNP [dm3] X_4887271_SNP [dm6]	C	G	6.431e^-5	1	INTRON CG42594
3R	26865959	3R_26865959_SNP [dm3] 3R_31040237_SNP [dm6]	G	C	6.440e^-5	1	SYNONYMOUS_CODING CanA1
3R	21487382	3R_21487382_SNP [dm3] 3R_25661660_SNP [dm6]	G	A	6.493e^-5	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	19371767	X_19371767_SNP [dm3] X_19477734_SNP [dm6]	T	C	6.533e^-5	1	SYNONYMOUS_CODING CG32533	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22062746	2L_22062746_SNP [dm3] 2L_22062746_SNP [dm6]	C	T	6.538e^-5	1	INTERGENIC	transposable element FlyBase
X	21508262	X_21508262_SNP [dm3] X_21637235_SNP [dm6]	A	T	6.564e^-5	1	INTERGENIC	transposable element FlyBase
2L	12444089	2L_12444089_SNP [dm3] 2L_12444089_SNP [dm6]	T	A	6.579e^-5	1	INTRON Oatp33Ea	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	5921994	X_5921994_SNP [dm3] X_6027961_SNP [dm6]	A	C	6.608e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25343116	3R_25343116_SNP [dm3] 3R_29517394_SNP [dm6]	T	C	6.885e^-5	1	DOWNSTREAM CG2014 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11153842	3L_11153842_SNP [dm3] 3L_11160742_SNP [dm6]	G	T	7.032e^-5	1	INTRON CG32082
2R	2999463	2R_2999463_SNP [dm3] 2R_7111958_SNP [dm6]	A	G	7.105e^-5	1	INTRON esn	TF binding site mE1_TFBS_inv
3R	23570263	3R_23570263_SNP [dm3] 3R_27744541_SNP [dm6]	G	A	7.106e^-5	1	INTRON Ets98B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8148947	X_8148947_SNP [dm3] X_8254914_SNP [dm6]	C	T	7.109e^-5	1	INTRON CG1632
2L	6351893	2L_6351893_SNP [dm3] 2L_6351893_SNP [dm6]	G	C	7.144e^-5	1	UPSTREAM CG9498 DOWNSTREAM ppk7 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	12134693	2R_12134693_SNP [dm3] 2R_16247188_SNP [dm6]	T	A	7.214e^-5	1	INTRON CngA
3L	992126	3L_992126_SNP [dm3] 3L_992126_SNP [dm6]	T	C	7.290e^-5	1	UTR_3_PRIME Glut1 DOWNSTREAM Glut1
2R	6489080	2R_6489080_SNP [dm3] 2R_10601575_SNP [dm6]	A	C	7.471e^-5	1	INTRON psq
X	21503281	X_21503281_SNP [dm3] X_21632254_SNP [dm6]	A	T	7.498e^-5	1	DOWNSTREAM CR44712 INTERGENIC
X	21503282	X_21503282_SNP [dm3] X_21632255_SNP [dm6]	G	C	7.498e^-5	1	DOWNSTREAM CR44712 INTERGENIC
2R	3094921	2R_3094921_SNP [dm3] 2R_7207416_SNP [dm6]	C	G	7.581e^-5	1	INTRON pk	TF binding site mE1_TFBS_chinmo
2R	13877198	2R_13877198_SNP [dm3] 2R_17989693_SNP [dm6]	T	C	7.591e^-5	1	SYNONYMOUS_CODING dpr13
2R	5930251	2R_5930251_SNP [dm3] 2R_10042746_SNP [dm6]	T	A	7.647e^-5	1	NON_SYNONYMOUS_CODING CG34220 INTRON oys
3R	21140213	3R_21140213_SNP [dm3] 3R_25314491_SNP [dm6]	C	G	7.717e^-5	1	UPSTREAM CG31087 DOWNSTREAM CG10559 INTERGENIC
3R	21140135	3R_21140135_SNP [dm3] 3R_25314413_SNP [dm6]	T	G	7.734e^-5	1	UPSTREAM CG31087 DOWNSTREAM CG10559 INTERGENIC
X	13059647	X_13059647_SNP [dm3] X_13165614_SNP [dm6]	C	A	7.771e^-5	1	INTRON CG34411
2R	12034954	2R_12034954_SNP [dm3] 2R_16147449_SNP [dm6]	C	T	7.793e^-5	1	SYNONYMOUS_CODING Ext2	TF binding site mE1_TFBS_sens
X	21508581	X_21508581_SNP [dm3] X_21637554_SNP [dm6]	C	A	7.816e^-5	1	INTERGENIC	transposable element FlyBase
2L	5321443	2L_5321443_SNP [dm3] 2L_5321443_SNP [dm6]	T	A	7.821e^-5	1	SYNONYMOUS_CODING Ncoa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1550031	2L_1550031_SNP [dm3] 2L_1550031_SNP [dm6]	C	G	7.844e^-5	1	INTERGENIC
3L	1839754	3L_1839754_SNP [dm3] 3L_1839754_SNP [dm6]	T	A	7.848e^-5	1	DOWNSTREAM Cpr62Bc INTERGENIC
2L	4286252	2L_4286252_SNP [dm3] 2L_4286252_SNP [dm6]	T	C	7.915e^-5	1	INTRON tutl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	4286230	2L_4286230_SNP [dm3] 2L_4286230_SNP [dm6]	G	C	7.982e^-5	1	INTRON tutl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	18147702	3L_18147702_SNP [dm3] 3L_18154602_SNP [dm6]	A	T	8.006e^-5	1	DOWNSTREAM CG7330 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25312146	3R_25312146_SNP [dm3] 3R_29486424_SNP [dm6]	C	T	8.067e^-5	1	UTR_3_PRIME Ptp99A DOWNSTREAM CG2321 INTRON CG2321
3R	4004060	3R_4004060_SNP [dm3] 3R_8178338_SNP [dm6]	G	T	8.072e^-5	1	INTRON grn
2L	5978092	2L_5978092_SNP [dm3] 2L_5978092_SNP [dm6]	T	C	8.079e^-5	1	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1216255	3L_1216255_SNP [dm3] 3L_1216255_SNP [dm6]	A	C	8.083e^-5	1	INTRON mwh	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2L	8271148	2L_8271148_SNP [dm3] 2L_8271148_SNP [dm6]	A	G	8.127e^-5	1	INTRON Btk29A
2L	8271163	2L_8271163_SNP [dm3] 2L_8271163_SNP [dm6]	G	T	8.127e^-5	1	INTRON Btk29A
3L	7827948	3L_7827948_SNP [dm3] 3L_7834848_SNP [dm6]	G	A	8.158e^-5	1	INTRON Pdp1
X	14077853	X_14077853_SNP [dm3] X_14183820_SNP [dm6]	G	A	8.187e^-5	1	UPSTREAM CG32603 DOWNSTREAM CG11584 INTERGENIC
3R	11309752	3R_11309752_SNP [dm3] 3R_15484030_SNP [dm6]	G	T	8.213e^-5	1	NON_SYNONYMOUS_CODING Rh6 DOWNSTREAM Trissin	TF binding site mE1_TFBS_chinmo
2R	6489073	2R_6489073_SNP [dm3] 2R_10601568_SNP [dm6]	A	C	8.413e^-5	1	INTRON psq
X	19371743	X_19371743_SNP [dm3] X_19477710_SNP [dm6]	A	T	8.521e^-5	1	SYNONYMOUS_CODING CG32533	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7590756	3L_7590756_SNP [dm3] 3L_7597656_SNP [dm6]	T	A	8.526e^-5	1	INTRON CG33275
2L	4286317	2L_4286317_SNP [dm3] 2L_4286317_SNP [dm6]	T	C	8.546e^-5	1	INTRON tutl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	23665564	3R_23665564_SNP [dm3] 3R_27839842_SNP [dm6]	C	T	8.602e^-5	1	INTRON CG34353
3L	8385498	3L_8385498_SNP [dm3] 3L_8392398_SNP [dm6]	C	T	8.629e^-5	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	8385824	3L_8385824_DEL [dm3] 3L_8392724_DEL [dm6]	AAA	C	8.629e^-5	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
3L	8385830	3L_8385830_SNP [dm3] 3L_8392730_SNP [dm6]	T	A	8.629e^-5	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
3L	8385840	3L_8385840_DEL [dm3] 3L_8392740_DEL [dm6]	TTT	T	8.629e^-5	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
X	20416029	X_20416029_SNP [dm3] X_20545002_SNP [dm6]	C	T	8.697e^-5	1	INTRON RunxB
X	13882555	X_13882555_SNP [dm3] X_13988522_SNP [dm6]	G	A	8.721e^-5	1	INTRON mamo	TF binding site BDTNP1_TFBS_dl
2R	6489088	2R_6489088_SNP [dm3] 2R_10601583_SNP [dm6]	A	G	8.721e^-5	1	INTRON psq
2R	4273084	2R_4273084_SNP [dm3] 2R_8385579_SNP [dm6]	G	A	8.856e^-5	1	INTRON pdm3
X	8259898	X_8259898_SNP [dm3] X_8365865_SNP [dm6]	C	T	8.927e^-5	1	INTRON nAChRalpha3
2L	11930045	2L_11930045_SNP [dm3] 2L_11930045_SNP [dm6]	C	T	8.932e^-5	1	INTERGENIC
X	8768467	X_8768467_SNP [dm3] X_8874434_SNP [dm6]	A	G	8.981e^-5	1	INTRON Moe	TF binding site mE1_TFBS_chinmo
2R	19242875	2R_19242875_SNP [dm3] 2R_23355352_SNP [dm6]	T	A	9.027e^-5	1	UTR_5_PRIME Rpi DOWNSTREAM CG30409	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17402647	3R_17402647_SNP [dm3] 3R_21576925_SNP [dm6]	A	G	9.097e^-5	1	SYNONYMOUS_CODING InR
2R	19271346	2R_19271346_SNP [dm3] 2R_23383823_SNP [dm6]	G	T	9.141e^-5	1	UPSTREAM CG13551 DOWNSTREAM CG30414 EXON CR44784	TF binding site BDTNP1_TFBS_dl mE1_TFBS_jumu
2L	10369392	2L_10369392_SNP [dm3] 2L_10369392_SNP [dm6]	G	A	9.492e^-5	1	SYNONYMOUS_CODING rho-5	TF binding site mE1_TFBS_cad
2R	3180830	2R_3180830_SNP [dm3] 2R_7293325_SNP [dm6]	G	C	9.527e^-5	1	INTRON pwn
2L	16366415	2L_16366415_SNP [dm3] 2L_16366415_SNP [dm6]	T	A	9.858e^-5	1	NON_SYNONYMOUS_CODING jhamt
2L	15458126	2L_15458126_SNP [dm3] 2L_15458126_SNP [dm6]	A	T	9.966e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	12453614	2R_12453614_SNP [dm3] 2R_16566109_SNP [dm6]	G	A	9.975e^-5	1	UTR_5_PRIME CG4945 UPSTREAM DAT
3L	8385833	3L_8385833_SNP [dm3] 3L_8392733_SNP [dm6]	T	C	1.016e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
3R	5543062	3R_5543062_SNP [dm3] 3R_9717340_SNP [dm6]	C	T	1.025e^-4	1	SYNONYMOUS_CODING hyd
2R	6489048	2R_6489048_SNP [dm3] 2R_10601543_SNP [dm6]	C	T	1.027e^-4	1	INTRON psq	TF binding site BDTNP1_TFBS_dl
3L	9535064	3L_9535064_SNP [dm3] 3L_9541964_SNP [dm6]	C	T	1.031e^-4	1	DOWNSTREAM Ir67a INTERGENIC
2R	6981462	2R_6981462_SNP [dm3] 2R_11093957_SNP [dm6]	G	A	1.038e^-4	1	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7077061	3L_7077061_SNP [dm3] 3L_7083961_SNP [dm6]	C	T	1.039e^-4	1	INTERGENIC
3R	26008104	3R_26008104_SNP [dm3] 3R_30182382_SNP [dm6]	T	C	1.039e^-4	1	DOWNSTREAM Bet5 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21503214	X_21503214_SNP [dm3] X_21632187_SNP [dm6]	G	C	1.045e^-4	1	DOWNSTREAM CR44712 INTERGENIC
3R	21487314	3R_21487314_DEL [dm3] 3R_25661592_DEL [dm6]	TT	T	1.046e^-4	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12057987	3L_12057987_SNP [dm3] 3L_12064887_SNP [dm6]	G	T	1.054e^-4	1	UPSTREAM rols INTERGENIC
2L	16135150	2L_16135150_SNP [dm3] 2L_16135150_SNP [dm6]	G	T	1.054e^-4	1	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2R	16204292	2R_16204292_SNP [dm3] 2R_20316787_SNP [dm6]	A	G	1.056e^-4	1	UTR_5_PRIME CG13868 UPSTREAM CG13871 DOWNSTREAM CR44642
2R	3023291	2R_3023291_SNP [dm3] 2R_7135786_SNP [dm6]	T	A	1.063e^-4	1	DOWNSTREAM CR44443 INTERGENIC
2L	7753709	2L_7753709_SNP [dm3] 2L_7753709_SNP [dm6]	A	C	1.067e^-4	1	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
3R	21486713	3R_21486713_SNP [dm3] 3R_25660991_SNP [dm6]	A	G	1.072e^-4	1	UTR_5_PRIME Tnks UPSTREAM RASSF8 DOWNSTREAM CR45208	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8271056	2L_8271056_SNP [dm3] 2L_8271056_SNP [dm6]	A	T	1.081e^-4	1	INTRON Btk29A
3L	16246522	3L_16246522_SNP [dm3] 3L_16253422_SNP [dm6]	T	A	1.083e^-4	1	INTERGENIC
3L	8385885	3L_8385885_SNP [dm3] 3L_8392785_SNP [dm6]	G	T	1.091e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
X	7388253	X_7388253_SNP [dm3] X_7494220_SNP [dm6]	C	A	1.108e^-4	1	UPSTREAM CG43278 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	20917737	3L_20917737_SNP [dm3] 3L_20924637_SNP [dm6]	A	G	1.114e^-4	1	INTERGENIC
3L	12837021	3L_12837021_SNP [dm3] 3L_12843921_SNP [dm6]	A	C	1.117e^-4	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
2L	16005724	2L_16005724_SNP [dm3] 2L_16005724_SNP [dm6]	C	T	1.127e^-4	1	UPSTREAM CR44844 DOWNSTREAM CG31820 & 2 others INTRON beat-Ic
3R	2862131	3R_2862131_SNP [dm3] 3R_7036409_SNP [dm6]	C	T	1.133e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6486472	2R_6486472_SNP [dm3] 2R_10598967_SNP [dm6]	C	A	1.134e^-4	1	INTRON psq
3R	14373395	3R_14373395_SNP [dm3] 3R_18547673_SNP [dm6]	A	T	1.138e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	767019	3L_767019_SNP [dm3] 3L_767019_SNP [dm6]	G	A	1.141e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	21500281	X_21500281_SNP [dm3] X_21629254_SNP [dm6]	G	C	1.160e^-4	1	START_GAINED DIP1 UTR_5_PRIME DIP1 INTRON DIP1	TF binding site BDTNP1_TFBS_dl
X	5589176	X_5589176_SNP [dm3] X_5695143_SNP [dm6]	A	G	1.178e^-4	1	UTR_5_PRIME CG3149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	471361	3L_471361_SNP [dm3] 3L_471361_SNP [dm6]	T	C	1.179e^-4	1	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14077834	X_14077834_SNP [dm3] X_14183801_SNP [dm6]	G	A	1.179e^-4	1	UPSTREAM CG32603 DOWNSTREAM CG11584 INTERGENIC
3L	2181041	3L_2181041_SNP [dm3] 3L_2181041_SNP [dm6]	T	A	1.179e^-4	1	INTERGENIC
2L	6952073	2L_6952073_SNP [dm3] 2L_6952073_SNP [dm6]	T	G	1.181e^-4	1	INTRON SA
2L	6952074	2L_6952074_SNP [dm3] 2L_6952074_SNP [dm6]	T	G	1.181e^-4	1	INTRON SA
2R	19059840	2R_19059840_SNP [dm3] 2R_23172317_SNP [dm6]	A	C	1.202e^-4	1	INTRON CG34371	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8189128	3L_8189128_SNP [dm3] 3L_8196028_SNP [dm6]	G	T	1.208e^-4	1	SYNONYMOUS_CODING MED24 UTR_3_PRIME Ubc12 DOWNSTREAM Ubc12
X	6398258	X_6398258_DEL [dm3] X_6504225_DEL [dm6]	AT	C	1.215e^-4	1	INTRON CG42340
2L	1114304	2L_1114304_INS [dm3] 2L_1114304_INS [dm6]	C	CC	1.220e^-4	1	DOWNSTREAM Pino & 1 other INTERGENIC
3L	17143799	3L_17143799_SNP [dm3] 3L_17150699_SNP [dm6]	T	A	1.221e^-4	1	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10885437	3R_10885437_SNP [dm3] 3R_15059715_SNP [dm6]	T	A	1.222e^-4	1	INTRON dpr9
3L	18147605	3L_18147605_DEL [dm3] 3L_18154505_DEL [dm6]	CATTCC	C	1.223e^-4	1	DOWNSTREAM CG7330 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	9739639	X_9739639_SNP [dm3] X_9845606_SNP [dm6]	C	T	1.225e^-4	1	INTRON CG32698
2R	18569153	2R_18569153_INS [dm3] 2R_22681648_INS [dm6]	T	ATGC	1.236e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4913434	X_4913434_SNP [dm3] X_5019401_SNP [dm6]	C	T	1.262e^-4	1	INTRON CR44833	regulatory region REDfly_CRMs
X	5580586	X_5580586_SNP [dm3] X_5686553_SNP [dm6]	C	T	1.266e^-4	1	SYNONYMOUS_CODING CG3160
2R	6946377	2R_6946377_SNP [dm3] 2R_11058872_SNP [dm6]	G	A	1.267e^-4	1	INTRON luna
3L	12482930	3L_12482930_SNP [dm3] 3L_12489830_SNP [dm6]	C	T	1.278e^-4	1	NON_SYNONYMOUS_CODING CG10660 UPSTREAM CR45681	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	8768471	X_8768471_SNP [dm3] X_8874438_SNP [dm6]	C	T	1.279e^-4	1	INTRON Moe	TF binding site mE1_TFBS_chinmo
3L	841771	3L_841771_SNP [dm3] 3L_841771_SNP [dm6]	G	A	1.285e^-4	1	SYNONYMOUS_CODING Gr61a UPSTREAM CG13902
3R	14231591	3R_14231591_SNP [dm3] 3R_18405869_SNP [dm6]	C	T	1.287e^-4	1	UTR_3_PRIME CG7685 DOWNSTREAM CG31122	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8683728	3R_8683728_SNP [dm3] 3R_12858006_SNP [dm6]	C	G	1.299e^-4	1	UPSTREAM CG10126 INTRON CG10126
2L	15458159	2L_15458159_SNP [dm3] 2L_15458159_SNP [dm6]	A	T	1.308e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	6489107	2R_6489107_SNP [dm3] 2R_10601602_SNP [dm6]	A	T	1.317e^-4	1	INTRON psq
2R	6178983	2R_6178983_SNP [dm3] 2R_10291478_SNP [dm6]	G	T	1.320e^-4	1	INTRON CAP
2L	17925786	2L_17925786_SNP [dm3] 2L_17925786_SNP [dm6]	C	T	1.330e^-4	1	INTERGENIC
X	3710168	X_3710168_DEL [dm3] X_3816135_DEL [dm6]	CTGC	C	1.333e^-4	1	INTRON ec	TF binding site BDTNP1_TFBS_twi
2R	6489050	2R_6489050_SNP [dm3] 2R_10601545_SNP [dm6]	A	T	1.335e^-4	1	INTRON psq	TF binding site BDTNP1_TFBS_dl
2R	19112959	2R_19112959_SNP [dm3] 2R_23225436_SNP [dm6]	G	A	1.340e^-4	1	INTERGENIC
X	21476448	X_21476448_SNP [dm3] X_21605421_SNP [dm6]	A	T	1.349e^-4	1	UPSTREAM CG14476 DOWNSTREAM CG17450 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
X	20221173	X_20221173_SNP [dm3] X_20350146_SNP [dm6]	T	C	1.356e^-4	1	INTERGENIC
3L	7594818	3L_7594818_SNP [dm3] 3L_7601718_SNP [dm6]	G	A	1.367e^-4	1	INTRON CG33275
2L	19196886	2L_19196886_SNP [dm3] 2L_19196886_SNP [dm6]	C	T	1.376e^-4	1	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26663390	3R_26663390_SNP [dm3] 3R_30837668_SNP [dm6]	A	T	1.378e^-4	1	INTRON CG15544
2L	1550144	2L_1550144_SNP [dm3] 2L_1550144_SNP [dm6]	A	T	1.389e^-4	1	INTERGENIC
3L	11477724	3L_11477724_SNP [dm3] 3L_11484624_SNP [dm6]	T	A	1.392e^-4	1	INTERGENIC
2R	16652574	2R_16652574_SNP [dm3] 2R_20765069_SNP [dm6]	A	G	1.396e^-4	1	INTERGENIC
2R	10517993	2R_10517993_SNP [dm3] 2R_14630488_SNP [dm6]	A	T	1.419e^-4	1	NON_SYNONYMOUS_CODING CG10131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8373689	3L_8373689_SNP [dm3] 3L_8380589_SNP [dm6]	G	A	1.421e^-4	1	DOWNSTREAM ImpE1 INTRON ImpE1
3L	2342540	3L_2342540_DEL [dm3] 3L_2342540_DEL [dm6]	ATAAGTTT	A	1.425e^-4	1	INTRON MsR1
X	4327974	X_4327974_SNP [dm3] X_4433941_SNP [dm6]	G	C	1.426e^-4	1	INTRON CR32773 & 1 other
3L	8385849	3L_8385849_SNP [dm3] 3L_8392749_SNP [dm6]	G	C	1.430e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
3L	8385850	3L_8385850_SNP [dm3] 3L_8392750_SNP [dm6]	A	T	1.430e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
3L	8385853	3L_8385853_DEL [dm3] 3L_8392753_DEL [dm6]	ACTAACTAAAAATAAAAGCC...	A	1.430e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
3R	18594709	3R_18594709_SNP [dm3] 3R_22768987_SNP [dm6]	A	G	1.433e^-4	1	NON_SYNONYMOUS_CODING CG43092 UPSTREAM CG43091 DOWNSTREAM CG43093 INTRON Usp12-46 & 1 other
2R	6489101	2R_6489101_INS [dm3] 2R_10601596_INS [dm6]	A	AAA	1.439e^-4	1	INTRON psq
3L	3183045	3L_3183045_SNP [dm3] 3L_3183045_SNP [dm6]	T	G	1.446e^-4	1	SYNONYMOUS_CODING Girdin
3L	5220660	3L_5220660_SNP [dm3] 3L_5227560_SNP [dm6]	G	T	1.466e^-4	1	INTRON shep
3R	21487318	3R_21487318_SNP [dm3] 3R_25661596_SNP [dm6]	A	C	1.475e^-4	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19840274	2R_19840274_SNP [dm3] 2R_23952751_SNP [dm6]	G	C	1.478e^-4	1	SYNONYMOUS_CODING CG3803 DOWNSTREAM fzr2 & 1 other
3R	10993696	3R_10993696_SNP [dm3] 3R_15167974_SNP [dm6]	C	G	1.482e^-4	1	INTRON Gyc88E
X	5380677	X_5380677_INS [dm3] X_5486644_INS [dm6]	A	AGCCCAGAAACACACACA...	1.493e^-4	1	INTRON SPR	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	5844525	X_5844525_SNP [dm3] X_5950492_SNP [dm6]	T	A	1.495e^-4	1	SYNONYMOUS_CODING CG32755 DOWNSTREAM CG6041	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20315238	X_20315238_INS [dm3] X_20444211_INS [dm6]	G	GG	1.499e^-4	1	UTR_3_PRIME CG1695
3R	18992462	3R_18992462_SNP [dm3] 3R_23166740_SNP [dm6]	A	T	1.505e^-4	1	INTERGENIC
3R	21487322	3R_21487322_DEL [dm3] 3R_25661600_DEL [dm6]	GAATTCTTAAATTA...	G	1.509e^-4	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	19352444	3L_19352444_SNP [dm3] 3L_19359344_SNP [dm6]	A	G	1.510e^-4	1	INTRON CG32206
3L	2342578	3L_2342578_SNP [dm3] 3L_2342578_SNP [dm6]	T	C	1.515e^-4	1	INTRON MsR1
3L	2342581	3L_2342581_SNP [dm3] 3L_2342581_SNP [dm6]	C	T	1.515e^-4	1	INTRON MsR1
3L	2342582	3L_2342582_SNP [dm3] 3L_2342582_SNP [dm6]	A	T	1.515e^-4	1	INTRON MsR1
2L	6530337	2L_6530337_SNP [dm3] 2L_6530337_SNP [dm6]	A	G	1.519e^-4	1	SPLICE_SITE_REGION eya INTRON eya	TF binding site mE1_TFBS_chinmo
3R	23392676	3R_23392676_SNP [dm3] 3R_27566954_SNP [dm6]	T	C	1.522e^-4	1	SYNONYMOUS_CODING wdb
X	8674625	X_8674625_SNP [dm3] X_8780592_SNP [dm6]	T	A	1.537e^-4	1	INTRON Lim1
3L	3106422	3L_3106422_DEL [dm3] 3L_3106422_DEL [dm6]	TT	T	1.539e^-4	1	INTRON Cht7
2R	10599527	2R_10599527_SNP [dm3] 2R_14712022_SNP [dm6]	A	T	1.546e^-4	1	INTRON mspo
2R	10599529	2R_10599529_SNP [dm3] 2R_14712024_SNP [dm6]	C	T	1.546e^-4	1	INTRON mspo
3L	9428657	3L_9428657_SNP [dm3] 3L_9435557_SNP [dm6]	T	G	1.560e^-4	1	UTR_5_PRIME MTF-1 UPSTREAM CG42526 INTRON MTF-1
X	21507639	X_21507639_SNP [dm3] X_21636612_SNP [dm6]	T	G	1.563e^-4	1	INTERGENIC	transposable element FlyBase
3R	18594715	3R_18594715_SNP [dm3] 3R_22768993_SNP [dm6]	A	C	1.563e^-4	1	NON_SYNONYMOUS_CODING CG43092 UPSTREAM CG43091 DOWNSTREAM CG43093 INTRON Usp12-46 & 1 other
2L	18587421	2L_18587421_SNP [dm3] 2L_18587421_SNP [dm6]	G	T	1.564e^-4	1	INTRON Pde11
X	8148426	X_8148426_SNP [dm3] X_8254393_SNP [dm6]	G	T	1.571e^-4	1	INTRON CG1632
3L	11045171	3L_11045171_SNP [dm3] 3L_11052071_SNP [dm6]	T	C	1.575e^-4	1	UPSTREAM CG43693 INTERGENIC
3R	4006059	3R_4006059_SNP [dm3] 3R_8180337_SNP [dm6]	T	C	1.576e^-4	1	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens
3R	21449842	3R_21449842_DEL [dm3] 3R_25624120_DEL [dm6]	CC	C	1.589e^-4	1	UPSTREAM Npl4 DOWNSTREAM Ssadh INTRON Npl4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
3L	11045175	3L_11045175_SNP [dm3] 3L_11052075_SNP [dm6]	T	G	1.591e^-4	1	UPSTREAM CG43693 INTERGENIC
3L	4513568	3L_4513568_SNP [dm3] 3L_4513568_SNP [dm6]	T	G	1.593e^-4	1	SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4462597	X_4462597_SNP [dm3] X_4568564_SNP [dm6]	A	T	1.593e^-4	1	INTRON CR32773
3R	18594627	3R_18594627_SNP [dm3] 3R_22768905_SNP [dm6]	A	T	1.605e^-4	1	UTR_3_PRIME CG43092 UPSTREAM CG43091 DOWNSTREAM CG43093 INTRON Usp12-46 & 1 other
3L	8815578	3L_8815578_SNP [dm3] 3L_8822478_SNP [dm6]	T	G	1.616e^-4	1	INTERGENIC
3R	14465431	3R_14465431_SNP [dm3] 3R_18639709_SNP [dm6]	T	C	1.630e^-4	1	INTRON qin & 1 other
3L	17772541	3L_17772541_SNP [dm3] 3L_17779441_SNP [dm6]	A	G	1.634e^-4	1	INTERGENIC
X	8617051	X_8617051_SNP [dm3] X_8723018_SNP [dm6]	C	A	1.635e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	2720771	3R_2720771_SNP [dm3] 3R_6895049_SNP [dm6]	C	T	1.639e^-4	1	DOWNSTREAM CR44932 INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	11448691	3L_11448691_SNP [dm3] 3L_11455591_SNP [dm6]	C	A	1.645e^-4	1	INTERGENIC
3L	1417609	3L_1417609_SNP [dm3] 3L_1417609_SNP [dm6]	G	C	1.648e^-4	1	NON_SYNONYMOUS_CODING FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
2L	3602369	2L_3602369_SNP [dm3] 2L_3602369_SNP [dm6]	C	T	1.659e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_sens
3L	16560520	3L_16560520_SNP [dm3] 3L_16567420_SNP [dm6]	A	G	1.668e^-4	1	DOWNSTREAM CG43206 INTRON Mipp1
3R	17402668	3R_17402668_SNP [dm3] 3R_21576946_SNP [dm6]	T	C	1.682e^-4	1	SYNONYMOUS_CODING InR
2L	9206013	2L_9206013_SNP [dm3] 2L_9206013_SNP [dm6]	C	A	1.690e^-4	1	INTRON tai	TF binding site BDTNP1_TFBS_dl
3L	1281298	3L_1281298_SNP [dm3] 3L_1281298_SNP [dm6]	G	A	1.700e^-4	1	INTRON CG32333
3R	9397568	3R_9397568_SNP [dm3] 3R_13571846_SNP [dm6]	G	A	1.705e^-4	1	INTERGENIC
2L	5978098	2L_5978098_SNP [dm3] 2L_5978098_SNP [dm6]	G	A	1.717e^-4	1	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	20990276	X_20990276_SNP [dm3] X_21119249_SNP [dm6]	T	C	1.721e^-4	1	SYNONYMOUS_CODING CG15445 DOWNSTREAM CR44374
2R	6489090	2R_6489090_MNP [dm3] 2R_10601585_MNP [dm6]	CAC	GTA	1.724e^-4	1	INTRON psq
2L	1285917	2L_1285917_SNP [dm3] 2L_1285917_SNP [dm6]	C	T	1.724e^-4	1	SYNONYMOUS_CODING robo3	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
X	5408400	X_5408400_SNP [dm3] X_5514367_SNP [dm6]	A	G	1.728e^-4	1	INTERGENIC
X	5408401	X_5408401_SNP [dm3] X_5514368_SNP [dm6]	A	G	1.728e^-4	1	INTERGENIC
3R	10819330	3R_10819330_SNP [dm3] 3R_14993608_SNP [dm6]	T	A	1.740e^-4	1	INTERGENIC
3R	15104399	3R_15104399_SNP [dm3] 3R_19278677_SNP [dm6]	C	T	1.753e^-4	1	DOWNSTREAM CR44173 INTERGENIC
2L	22062800	2L_22062800_SNP [dm3] 2L_22062800_SNP [dm6]	G	T	1.756e^-4	1	INTERGENIC	transposable element FlyBase
X	8768463	X_8768463_SNP [dm3] X_8874430_SNP [dm6]	G	A	1.763e^-4	1	INTRON Moe	TF binding site mE1_TFBS_chinmo
3L	11233148	3L_11233148_SNP [dm3] 3L_11240048_SNP [dm6]	T	C	1.783e^-4	1	INTERGENIC
3L	11233154	3L_11233154_SNP [dm3] 3L_11240054_SNP [dm6]	A	G	1.783e^-4	1	INTERGENIC
X	3710364	X_3710364_SNP [dm3] X_3816331_SNP [dm6]	G	C	1.795e^-4	1	INTRON ec	TF binding site BDTNP1_TFBS_twi
2R	16513622	2R_16513622_SNP [dm3] 2R_20626117_SNP [dm6]	G	A	1.797e^-4	1	NON_SYNONYMOUS_CODING CG16742
2L	12727404	2L_12727404_SNP [dm3] 2L_12727404_SNP [dm6]	G	A	1.801e^-4	1	INTRON MRP
2L	4286320	2L_4286320_SNP [dm3] 2L_4286320_SNP [dm6]	T	C	1.804e^-4	1	INTRON tutl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	8245979	2L_8245979_SNP [dm3] 2L_8245979_SNP [dm6]	G	T	1.815e^-4	1	NON_SYNONYMOUS_CODING CG8086 INTRON CG8086
3L	7537975	3L_7537975_SNP [dm3] 3L_7544875_SNP [dm6]	A	C	1.816e^-4	1	INTERGENIC
3R	21487321	3R_21487321_SNP [dm3] 3R_25661599_SNP [dm6]	A	C	1.819e^-4	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	2862228	3R_2862228_SNP [dm3] 3R_7036506_SNP [dm6]	A	G	1.864e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6489009	2R_6489009_SNP [dm3] 2R_10601504_SNP [dm6]	C	A	1.868e^-4	1	INTRON psq	TF binding site BDTNP1_TFBS_dl
2L	5321396	2L_5321396_SNP [dm3] 2L_5321396_SNP [dm6]	T	A	1.873e^-4	1	NON_SYNONYMOUS_CODING Ncoa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8617049	X_8617049_SNP [dm3] X_8723016_SNP [dm6]	T	A	1.878e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11060839	2R_11060839_SNP [dm3] 2R_15173334_SNP [dm6]	T	C	1.880e^-4	1	INTRON igl
3L	12071077	3L_12071077_SNP [dm3] 3L_12077977_SNP [dm6]	G	T	1.880e^-4	1	INTRON Sema-5c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	18594641	3R_18594641_SNP [dm3] 3R_22768919_SNP [dm6]	T	G	1.892e^-4	1	UTR_3_PRIME CG43092 UPSTREAM CG43091 DOWNSTREAM CG43093 INTRON Usp12-46 & 1 other
2L	10258221	2L_10258221_SNP [dm3] 2L_10258221_SNP [dm6]	T	C	1.898e^-4	1	INTRON Pten
X	6865052	X_6865052_SNP [dm3] X_6971019_SNP [dm6]	A	G	1.913e^-4	1	INTRON CG4586	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14078391	X_14078391_SNP [dm3] X_14184358_SNP [dm6]	C	T	1.917e^-4	1	UPSTREAM CG32603 INTERGENIC
3L	9608146	3L_9608146_SNP [dm3] 3L_9615046_SNP [dm6]	T	C	1.924e^-4	1	UPSTREAM LanB2 INTRON LanB2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	751880	3R_751880_SNP [dm3] 3R_4926158_SNP [dm6]	C	T	1.925e^-4	1	NON_SYNONYMOUS_CODING Cdep	TF binding site mE1_TFBS_cad
2L	7451494	2L_7451494_SNP [dm3] 2L_7451494_SNP [dm6]	T	G	1.927e^-4	1	UPSTREAM santa-maria INTERGENIC
3R	10556794	3R_10556794_SNP [dm3] 3R_14731072_SNP [dm6]	C	T	1.929e^-4	1	UTR_5_PRIME CG7530 INTRON CG7530	TF binding site mE1_TFBS_Trl
2R	6976483	2R_6976483_SNP [dm3] 2R_11088978_SNP [dm6]	C	T	1.931e^-4	1	DOWNSTREAM CG43188 INTRON luna
3R	10175116	3R_10175116_SNP [dm3] 3R_14349394_SNP [dm6]	T	C	1.953e^-4	1	INTRON NK7.1	TF binding site mE1_TFBS_inv
2L	10807152	2L_10807152_SNP [dm3] 2L_10807152_SNP [dm6]	G	T	1.973e^-4	1	INTRON Nos	TF binding site mE1_TFBS_chinmo
3R	22472872	3R_22472872_INS [dm3] 3R_26647150_INS [dm6]	T	TT	1.977e^-4	1	UTR_3_PRIME beat-VII
2L	6328952	2L_6328952_SNP [dm3] 2L_6328952_SNP [dm6]	C	T	1.990e^-4	1	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad
2L	16965385	2L_16965385_SNP [dm3] 2L_16965385_SNP [dm6]	A	G	1.992e^-4	1	UPSTREAM CR45285 INTERGENIC
2L	12323351	2L_12323351_SNP [dm3] 2L_12323351_SNP [dm6]	C	T	1.993e^-4	1	INTERGENIC
3R	4004140	3R_4004140_SNP [dm3] 3R_8178418_SNP [dm6]	T	C	1.999e^-4	1	INTRON grn
3R	20537416	3R_20537416_SNP [dm3] 3R_24711694_SNP [dm6]	T	G	2.001e^-4	1	DOWNSTREAM slo INTERGENIC
3R	21487127	3R_21487127_SNP [dm3] 3R_25661405_SNP [dm6]	T	A	2.002e^-4	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15104788	3R_15104788_SNP [dm3] 3R_19279066_SNP [dm6]	C	T	2.011e^-4	1	EXON CR44173
3L	10570973	3L_10570973_SNP [dm3] 3L_10577873_SNP [dm6]	A	T	2.015e^-4	1	INTRON A2bp1
3R	15104540	3R_15104540_SNP [dm3] 3R_19278818_SNP [dm6]	C	T	2.025e^-4	1	EXON CR44173
X	15718071	X_15718071_SNP [dm3] X_15824038_SNP [dm6]	C	G	2.027e^-4	1	SPLICE_SITE_REGION sd INTRON sd	TF binding site mE1_TFBS_sens
2L	9694896	2L_9694896_SNP [dm3] 2L_9694896_SNP [dm6]	C	T	2.028e^-4	1	INTRON Pka-C1
2L	6948942	2L_6948942_DEL [dm3] 2L_6948942_DEL [dm6]	TG	T	2.051e^-4	1	UPSTREAM ihog DOWNSTREAM Gas41 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	16111944	2R_16111944_SNP [dm3] 2R_20224439_SNP [dm6]	G	T	2.059e^-4	1	INTERGENIC
3L	991991	3L_991991_SNP [dm3] 3L_991991_SNP [dm6]	A	G	2.061e^-4	1	UTR_3_PRIME Glut1 DOWNSTREAM Glut1
3L	7471244	3L_7471244_SNP [dm3] 3L_7478144_SNP [dm6]	G	A	2.065e^-4	1	INTERGENIC
3L	6581189	3L_6581189_SNP [dm3] 3L_6588089_SNP [dm6]	C	T	2.068e^-4	1	INTRON CG18769 & 1 other
2R	19442727	2R_19442727_SNP [dm3] 2R_23555204_SNP [dm6]	G	C	2.070e^-4	1	NON_SYNONYMOUS_CODING Rrp4 UPSTREAM pita	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Ubx
3R	23087562	3R_23087562_SNP [dm3] 3R_27261840_SNP [dm6]	T	C	2.074e^-4	1	SYNONYMOUS_CODING woc EXON CR44049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13615047	X_13615047_SNP [dm3] X_13721014_SNP [dm6]	G	A	2.076e^-4	1	SYNONYMOUS_CODING CG9941	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	3599792	2R_3599792_SNP [dm3] 2R_7712287_SNP [dm6]	A	G	2.077e^-4	1	UPSTREAM CG1942 DOWNSTREAM mir-4909 & 1 other INTERGENIC
3R	21487273	3R_21487273_SNP [dm3] 3R_25661551_SNP [dm6]	C	T	2.080e^-4	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21487349	3R_21487349_SNP [dm3] 3R_25661627_SNP [dm6]	A	G	2.086e^-4	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	4780759	X_4780759_SNP [dm3] X_4886726_SNP [dm6]	A	T	2.087e^-4	1	INTRON CG42594
2R	16211890	2R_16211890_SNP [dm3] 2R_20324385_SNP [dm6]	C	A	2.087e^-4	1	SYNONYMOUS_CODING CG8920
X	2083285	X_2083285_SNP [dm3] X_2189252_SNP [dm6]	A	G	2.088e^-4	1	START_GAINED Mct1 UTR_5_PRIME Mct1 DOWNSTREAM CG3457	TF binding site mE1_TFBS_chinmo
3L	17367823	3L_17367823_SNP [dm3] 3L_17374723_SNP [dm6]	A	G	2.090e^-4	1	INTRON Cad74A
3L	12061531	3L_12061531_SNP [dm3] 3L_12068431_SNP [dm6]	G	A	2.094e^-4	1	SYNONYMOUS_CODING Sema-5c
X	4780800	X_4780800_SNP [dm3] X_4886767_SNP [dm6]	G	T	2.095e^-4	1	INTRON CG42594
X	4780803	X_4780803_SNP [dm3] X_4886770_SNP [dm6]	T	G	2.095e^-4	1	INTRON CG42594
2L	16965382	2L_16965382_SNP [dm3] 2L_16965382_SNP [dm6]	C	T	2.106e^-4	1	UPSTREAM CR45285 INTERGENIC
2L	5912637	2L_5912637_SNP [dm3] 2L_5912637_SNP [dm6]	T	C	2.106e^-4	1	SYNONYMOUS_CODING bchs
X	21506601	X_21506601_SNP [dm3] X_21635574_SNP [dm6]	G	A	2.123e^-4	1	INTERGENIC	transposable element FlyBase
3L	8032117	3L_8032117_SNP [dm3] 3L_8039017_SNP [dm6]	G	A	2.125e^-4	1	INTRON nmo	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7416365	3R_7416365_SNP [dm3] 3R_11590643_SNP [dm6]	G	T	2.127e^-4	1	UTR_3_PRIME Jupiter UPSTREAM CG6791	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	4004159	3R_4004159_SNP [dm3] 3R_8178437_SNP [dm6]	A	C	2.142e^-4	1	INTRON grn
2L	7753641	2L_7753641_SNP [dm3] 2L_7753641_SNP [dm6]	T	A	2.151e^-4	1	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
3L	12071126	3L_12071126_SNP [dm3] 3L_12078026_SNP [dm6]	T	C	2.159e^-4	1	INTRON Sema-5c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7942645	2L_7942645_SNP [dm3] 2L_7942645_SNP [dm6]	C	T	2.183e^-4	1	INTRON Snoo
2L	8174009	2L_8174009_SNP [dm3] 2L_8174009_SNP [dm6]	C	A	2.185e^-4	1	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8515516	X_8515516_SNP [dm3] X_8621483_SNP [dm6]	C	T	2.186e^-4	1	INTERGENIC
2R	10095020	2R_10095020_SNP [dm3] 2R_14207515_SNP [dm6]	G	A	2.202e^-4	1	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	19136256	2R_19136256_SNP [dm3] 2R_23248733_SNP [dm6]	T	A	2.208e^-4	1	UPSTREAM RpL22-like INTERGENIC
3L	992143	3L_992143_SNP [dm3] 3L_992143_SNP [dm6]	C	G	2.210e^-4	1	UTR_3_PRIME Glut1 DOWNSTREAM Glut1
2L	4286212	2L_4286212_DEL [dm3] 2L_4286212_DEL [dm6]	ATA	A	2.213e^-4	1	INTRON tutl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	18561957	2L_18561957_SNP [dm3] 2L_18561957_SNP [dm6]	T	A	2.220e^-4	1	INTRON Pde11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
X	10330973	X_10330973_SNP [dm3] X_10436940_SNP [dm6]	C	G	2.228e^-4	1	INTRON CG32683
3L	11689052	3L_11689052_SNP [dm3] 3L_11695952_SNP [dm6]	A	T	2.230e^-4	1	INTRON CG11652	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	9532524	2L_9532524_DEL [dm3] 2L_9532524_DEL [dm6]	GA	G	2.239e^-4	1	INTRON Oatp30B	TF binding site mE1_TFBS_sens
2L	8370627	2L_8370627_SNP [dm3] 2L_8370627_SNP [dm6]	A	T	2.240e^-4	1	UTR_5_PRIME CG17292 DOWNSTREAM Pp2A-29B EXON CR45341
2R	10599531	2R_10599531_SNP [dm3] 2R_14712026_SNP [dm6]	A	T	2.248e^-4	1	INTRON mspo
2L	8268043	2L_8268043_SNP [dm3] 2L_8268043_SNP [dm6]	A	T	2.253e^-4	1	INTRON Btk29A	TF binding site mE1_TFBS_D
3R	7661557	3R_7661557_DEL [dm3] 3R_11835835_DEL [dm6]	ACTGCGAA	A	2.272e^-4	1	INTRON CG6959
3L	8385816	3L_8385816_SNP [dm3] 3L_8392716_SNP [dm6]	C	T	2.276e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
3L	8385817	3L_8385817_SNP [dm3] 3L_8392717_SNP [dm6]	A	G	2.276e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
3L	8385819	3L_8385819_DEL [dm3] 3L_8392719_DEL [dm6]	TCC	AA	2.276e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
2R	6489147	2R_6489147_SNP [dm3] 2R_10601642_SNP [dm6]	G	A	2.280e^-4	1	INTRON psq
3R	2720828	3R_2720828_SNP [dm3] 3R_6895106_SNP [dm6]	C	T	2.304e^-4	1	DOWNSTREAM CR44932 INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	992127	3L_992127_SNP [dm3] 3L_992127_SNP [dm6]	C	T	2.311e^-4	1	UTR_3_PRIME Glut1 DOWNSTREAM Glut1
3R	5151452	3R_5151452_SNP [dm3] 3R_9325730_SNP [dm6]	G	T	2.322e^-4	1	INTRON CG8861
X	15156573	X_15156573_INS [dm3] X_15262540_INS [dm6]	T	TTC	2.331e^-4	1	INTERGENIC
3R	21487421	3R_21487421_SNP [dm3] 3R_25661699_SNP [dm6]	A	G	2.338e^-4	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21486339	3R_21486339_SNP [dm3] 3R_25660617_SNP [dm6]	T	C	2.358e^-4	1	SYNONYMOUS_CODING Tnks	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6295517	2L_6295517_SNP [dm3] 2L_6295517_SNP [dm6]	G	A	2.362e^-4	1	INTRON Ddr
2R	18734236	2R_18734236_SNP [dm3] 2R_22846713_SNP [dm6]	C	A	2.377e^-4	1	INTRON CG3649	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3966070	3R_3966070_SNP [dm3] 3R_8140348_SNP [dm6]	T	A	2.401e^-4	1	UPSTREAM tRNA:N5:84F & 2 others DOWNSTREAM tRNA:R2:84Fc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	4286354	2L_4286354_SNP [dm3] 2L_4286354_SNP [dm6]	T	A	2.402e^-4	1	INTRON tutl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12444045	2L_12444045_SNP [dm3] 2L_12444045_SNP [dm6]	T	C	2.407e^-4	1	SYNONYMOUS_CODING Oatp33Ea	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	3095446	2R_3095446_SNP [dm3] 2R_7207941_SNP [dm6]	G	T	2.410e^-4	1	INTRON pk
3L	4497387	3L_4497387_SNP [dm3] 3L_4497387_SNP [dm6]	A	G	2.426e^-4	1	INTRON CG13721	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15144518	2R_15144518_SNP [dm3] 2R_19257013_SNP [dm6]	A	G	2.427e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
2L	930412	2L_930412_SNP [dm3] 2L_930412_SNP [dm6]	G	T	2.435e^-4	1	SYNONYMOUS_CODING CG4341 INTRON CG4341
X	8598653	X_8598653_DEL [dm3] X_8704620_DEL [dm6]	AA	A	2.439e^-4	1	INTERGENIC
2R	6414633	2R_6414633_SNP [dm3] 2R_10527128_SNP [dm6]	C	T	2.443e^-4	1	NON_SYNONYMOUS_CODING lola INTRON lola	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24564104	3R_24564104_SNP [dm3] 3R_28738382_SNP [dm6]	G	A	2.455e^-4	1	INTRON AstA-R2
3L	8383540	3L_8383540_SNP [dm3] 3L_8390440_SNP [dm6]	C	T	2.463e^-4	1	UTR_3_PRIME ImpE1	TF binding site mE1_TFBS_HSA
X	5922007	X_5922007_SNP [dm3] X_6027974_SNP [dm6]	A	T	2.491e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8527545	3R_8527545_SNP [dm3] 3R_12701823_SNP [dm6]	C	T	2.501e^-4	1	INTRON Past1
X	6113918	X_6113918_SNP [dm3] X_6219885_SNP [dm6]	A	G	2.505e^-4	1	UPSTREAM Efr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	6489106	2R_6489106_SNP [dm3] 2R_10601601_SNP [dm6]	T	C	2.520e^-4	1	INTRON psq
2L	22063201	2L_22063201_SNP [dm3] 2L_22063201_SNP [dm6]	A	G	2.520e^-4	1	INTERGENIC
2L	17925773	2L_17925773_SNP [dm3] 2L_17925773_SNP [dm6]	A	G	2.521e^-4	1	INTERGENIC
3L	23064883	3L_23064883_SNP [dm3] 3L_23071783_SNP [dm6]	T	G	2.525e^-4	1	INTERGENIC	transposable element FlyBase
2L	5913459	2L_5913459_SNP [dm3] 2L_5913459_SNP [dm6]	G	T	2.544e^-4	1	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad
2R	9652017	2R_9652017_SNP [dm3] 2R_13764512_SNP [dm6]	T	A	2.548e^-4	1	INTERGENIC
X	10277714	X_10277714_SNP [dm3] X_10383681_SNP [dm6]	T	A	2.557e^-4	1	UTR_3_PRIME Psf3 DOWNSTREAM Psf3 & 1 other
2L	12331938	2L_12331938_SNP [dm3] 2L_12331938_SNP [dm6]	C	T	2.562e^-4	1	INTERGENIC
X	14081486	X_14081486_SNP [dm3] X_14187453_SNP [dm6]	A	C	2.563e^-4	1	SYNONYMOUS_CODING CG12481
3L	992142	3L_992142_SNP [dm3] 3L_992142_SNP [dm6]	G	T	2.568e^-4	1	UTR_3_PRIME Glut1 DOWNSTREAM Glut1
2L	7451647	2L_7451647_SNP [dm3] 2L_7451647_SNP [dm6]	T	G	2.572e^-4	1	UPSTREAM santa-maria DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz
2L	10528382	2L_10528382_SNP [dm3] 2L_10528382_SNP [dm6]	A	G	2.579e^-4	1	UPSTREAM Lip4 INTRON Lip4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8276715	2R_8276715_MNP [dm3] 2R_12389210_MNP [dm6]	GTG	TAA	2.580e^-4	1	INTRON Cpr49Ac	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16391768	2L_16391768_SNP [dm3] 2L_16391768_SNP [dm6]	A	G	2.583e^-4	1	INTERGENIC
X	4632917	X_4632917_DEL [dm3] X_4738884_DEL [dm6]	AATA	A	2.591e^-4	1	INTERGENIC
2R	10339376	2R_10339376_DEL [dm3] 2R_14451871_DEL [dm6]	AAT	A	2.593e^-4	1	INTRON Oaz	TF binding site mE1_TFBS_chinmo
2R	10698001	2R_10698001_SNP [dm3] 2R_14810496_SNP [dm6]	T	G	2.594e^-4	1	DOWNSTREAM hui INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4195945	2L_4195945_SNP [dm3] 2L_4195945_SNP [dm6]	C	G	2.602e^-4	1	INTRON CG3714
3L	5919316	3L_5919316_SNP [dm3] 3L_5926216_SNP [dm6]	C	T	2.608e^-4	1	UPSTREAM Vap-33B INTRON Vap-33B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	15156601	X_15156601_SNP [dm3] X_15262568_SNP [dm6]	A	G	2.610e^-4	1	INTERGENIC
3L	982324	3L_982324_SNP [dm3] 3L_982324_SNP [dm6]	T	C	2.610e^-4	1	SYNONYMOUS_CODING Glut1 UTR_3_PRIME Glut1 INTRON Glut1
X	2094369	X_2094369_SNP [dm3] X_2200336_SNP [dm6]	C	T	2.611e^-4	1	SYNONYMOUS_CODING Mct1 DOWNSTREAM CR43637	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	8746966	2L_8746966_SNP [dm3] 2L_8746966_SNP [dm6]	A	G	2.619e^-4	1	INTERGENIC
2L	12050651	2L_12050651_SNP [dm3] 2L_12050651_SNP [dm6]	T	C	2.622e^-4	1	SYNONYMOUS_CODING CG14945	TF binding site mE1_TFBS_chinmo
3L	5542614	3L_5542614_SNP [dm3] 3L_5549514_SNP [dm6]	A	G	2.633e^-4	1	INTRON CG10625
2R	3528730	2R_3528730_SNP [dm3] 2R_7641225_SNP [dm6]	C	A	2.644e^-4	1	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340	TF binding site mE1_TFBS_cad
3L	9628708	3L_9628708_SNP [dm3] 3L_9635608_SNP [dm6]	A	G	2.646e^-4	1	INTRON fry
X	21507983	X_21507983_SNP [dm3] X_21636956_SNP [dm6]	T	C	2.655e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12666628	X_12666628_SNP [dm3] X_12772595_SNP [dm6]	C	T	2.666e^-4	1	UTR_3_PRIME CG3812 & 1 other DOWNSTREAM CG32647
2R	7708737	2R_7708737_SNP [dm3] 2R_11821232_SNP [dm6]	A	G	2.670e^-4	1	INTERGENIC
3L	9524745	3L_9524745_SNP [dm3] 3L_9531645_SNP [dm6]	C	T	2.677e^-4	1	DOWNSTREAM Or67a INTERGENIC
2R	17715275	2R_17715275_SNP [dm3] 2R_21827770_SNP [dm6]	A	C	2.690e^-4	1	INTRON CG13492	TF binding site mE1_TFBS_cad
2L	1305942	2L_1305942_SNP [dm3] 2L_1305942_SNP [dm6]	C	T	2.696e^-4	1	INTERGENIC
2R	15135187	2R_15135187_SNP [dm3] 2R_19247682_SNP [dm6]	G	T	2.697e^-4	1	INTERGENIC
2L	13875383	2L_13875383_SNP [dm3] 2L_13875383_SNP [dm6]	T	G	2.704e^-4	1	INTRON CenG1A
X	16138036	X_16138036_DEL [dm3] X_16244003_DEL [dm6]	AGGA	A	2.709e^-4	1	INTERGENIC
2R	18493514	2R_18493514_SNP [dm3] 2R_22606009_SNP [dm6]	C	T	2.710e^-4	1	UPSTREAM RpS16 & 2 others INTRON RpS16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11945262	2R_11945262_SNP [dm3] 2R_16057757_SNP [dm6]	T	C	2.712e^-4	1	INTRON CG8405	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	9206012	2L_9206012_SNP [dm3] 2L_9206012_SNP [dm6]	A	T	2.713e^-4	1	INTRON tai	TF binding site BDTNP1_TFBS_dl
2L	16574006	2L_16574006_SNP [dm3] 2L_16574006_SNP [dm6]	A	T	2.717e^-4	1	INTRON CG42389
3R	9998133	3R_9998133_SNP [dm3] 3R_14172411_SNP [dm6]	C	G	2.730e^-4	1	UTR_3_PRIME Dop1R1
2R	12660192	2R_12660192_SNP [dm3] 2R_16772687_SNP [dm6]	G	A	2.731e^-4	1	UPSTREAM unc-104 DOWNSTREAM Sod2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	14162870	2R_14162870_SNP [dm3] 2R_18275365_SNP [dm6]	C	T	2.732e^-4	1	DOWNSTREAM Ote INTERGENIC	TF binding site mE1_TFBS_cad
3L	876000	3L_876000_SNP [dm3] 3L_876000_SNP [dm6]	G	A	2.738e^-4	1	INTRON CG32479
3R	26863706	3R_26863706_INS [dm3] 3R_31037984_INS [dm6]	T	TGT	2.745e^-4	1	INTERGENIC
X	17209442	X_17209442_SNP [dm3] X_17315409_SNP [dm6]	T	C	2.751e^-4	1	SYNONYMOUS_CODING B-H2 UTR_5_PRIME B-H2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad
3L	7537989	3L_7537989_INS [dm3] 3L_7544889_INS [dm6]	T	TCAGATAAACCAAATACCA...	2.758e^-4	1	INTERGENIC
X	9589476	X_9589476_SNP [dm3] X_9695443_SNP [dm6]	A	C	2.765e^-4	1	INTRON btd	TF binding site BDTNP1_TFBS_dl
X	6111186	X_6111186_SNP [dm3] X_6217153_SNP [dm6]	T	C	2.777e^-4	1	DOWNSTREAM Btd INTERGENIC
3R	9998085	3R_9998085_SNP [dm3] 3R_14172363_SNP [dm6]	T	C	2.778e^-4	1	UTR_3_PRIME Dop1R1
3R	21486333	3R_21486333_SNP [dm3] 3R_25660611_SNP [dm6]	T	C	2.782e^-4	1	SYNONYMOUS_CODING Tnks	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21449333	3R_21449333_SNP [dm3] 3R_25623611_SNP [dm6]	A	G	2.797e^-4	1	UTR_5_PRIME Npl4 INTRON Npl4
3R	3483643	3R_3483643_SNP [dm3] 3R_7657921_SNP [dm6]	T	A	2.804e^-4	1	UPSTREAM Nlg1 INTERGENIC	TF binding site mE1_TFBS_inv
3L	7809083	3L_7809083_DEL [dm3] 3L_7815983_DEL [dm6]	TT	T	2.808e^-4	1	UTR_3_PRIME Pdp1
X	21476703	X_21476703_SNP [dm3] X_21605676_SNP [dm6]	T	A	2.817e^-4	1	UPSTREAM CG14476 DOWNSTREAM CG17450 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx transposable element FlyBase
X	21507592	X_21507592_SNP [dm3] X_21636565_SNP [dm6]	G	T	2.823e^-4	1	INTERGENIC	transposable element FlyBase
2L	13206209	2L_13206209_SNP [dm3] 2L_13206209_SNP [dm6]	C	T	2.832e^-4	1	INTRON Pect	TF binding site mE1_TFBS_HSA
3R	13080825	3R_13080825_SNP [dm3] 3R_17255103_SNP [dm6]	A	G	2.835e^-4	1	UPSTREAM CG44259 INTRON beat-IIb
3L	16921097	3L_16921097_SNP [dm3] 3L_16927997_SNP [dm6]	C	T	2.839e^-4	1	UPSTREAM CG13023 DOWNSTREAM CG11905 INTERGENIC
2L	6952049	2L_6952049_SNP [dm3] 2L_6952049_SNP [dm6]	C	T	2.842e^-4	1	SYNONYMOUS_CODING SA
3L	8769065	3L_8769065_SNP [dm3] 3L_8775965_SNP [dm6]	G	A	2.846e^-4	1	INTRON Fhos
3L	1839352	3L_1839352_SNP [dm3] 3L_1839352_SNP [dm6]	A	C	2.853e^-4	1	DOWNSTREAM Cpr62Bc INTERGENIC
2L	15641105	2L_15641105_DEL [dm3] 2L_15641105_DEL [dm6]	CTGCCATCTCCAATCT...	C	2.860e^-4	1	INTERGENIC
2L	9532527	2L_9532527_SNP [dm3] 2L_9532527_SNP [dm6]	G	A	2.861e^-4	1	INTRON Oatp30B	TF binding site mE1_TFBS_sens
X	20654029	X_20654029_SNP [dm3] X_20783002_SNP [dm6]	T	A	2.864e^-4	1	INTRON shakB	transposable element FlyBase
2R	5786108	2R_5786108_SNP [dm3] 2R_9898603_SNP [dm6]	G	A	2.868e^-4	1	DOWNSTREAM CG1441 & 1 other INTERGENIC
2R	12660175	2R_12660175_SNP [dm3] 2R_16772670_SNP [dm6]	C	T	2.875e^-4	1	UTR_5_PRIME unc-104 UPSTREAM unc-104 DOWNSTREAM Sod2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	12214913	2R_12214913_DEL [dm3] 2R_16327408_DEL [dm6]	GT	G	2.889e^-4	1	INTRON Vha44
3L	9540803	3L_9540803_SNP [dm3] 3L_9547703_SNP [dm6]	C	T	2.912e^-4	1	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	8259909	X_8259909_SNP [dm3] X_8365876_SNP [dm6]	A	T	2.916e^-4	1	INTRON nAChRalpha3
3L	1989108	3L_1989108_SNP [dm3] 3L_1989108_SNP [dm6]	A	G	2.928e^-4	1	INTERGENIC
3R	18767805	3R_18767805_INS [dm3] 3R_22942083_INS [dm6]	C	CAC	2.930e^-4	1	INTRON klg	TF binding site mE1_TFBS_chinmo
3R	25669804	3R_25669804_SNP [dm3] 3R_29844082_SNP [dm6]	G	A	2.935e^-4	1	INTRON Cad99C
3L	13884131	3L_13884131_SNP [dm3] 3L_13891031_SNP [dm6]	G	T	2.937e^-4	1	INTRON dysc
2L	7085763	2L_7085763_SNP [dm3] 2L_7085763_SNP [dm6]	A	G	2.939e^-4	1	INTERGENIC
3L	16922010	3L_16922010_SNP [dm3] 3L_16928910_SNP [dm6]	G	A	2.939e^-4	1	SYNONYMOUS_CODING CG11905 DOWNSTREAM CG11905	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5321674	2L_5321674_SNP [dm3] 2L_5321674_SNP [dm6]	T	G	2.941e^-4	1	SYNONYMOUS_CODING Ncoa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8373696	3L_8373696_SNP [dm3] 3L_8380596_SNP [dm6]	G	T	2.960e^-4	1	DOWNSTREAM ImpE1 INTRON ImpE1
3L	9647366	3L_9647366_SNP [dm3] 3L_9654266_SNP [dm6]	T	C	2.966e^-4	1	INTRON fry & 1 other
2R	4901640	2R_4901640_SNP [dm3] 2R_9014135_SNP [dm6]	C	G	2.967e^-4	1	UPSTREAM CG8172 DOWNSTREAM CG13744 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	3023295	2R_3023295_SNP [dm3] 2R_7135790_SNP [dm6]	A	C	2.968e^-4	1	DOWNSTREAM CR44443 INTERGENIC
3L	14383353	3L_14383353_SNP [dm3] 3L_14390253_SNP [dm6]	C	A	2.969e^-4	1	INTERGENIC
2R	12134715	2R_12134715_SNP [dm3] 2R_16247210_SNP [dm6]	A	C	2.974e^-4	1	INTRON CngA
3L	3106447	3L_3106447_SNP [dm3] 3L_3106447_SNP [dm6]	T	A	2.976e^-4	1	INTRON Cht7
2L	8246030	2L_8246030_SNP [dm3] 2L_8246030_SNP [dm6]	G	A	2.978e^-4	1	SYNONYMOUS_CODING CG8086 INTRON CG8086
2L	8254411	2L_8254411_SNP [dm3] 2L_8254411_SNP [dm6]	T	C	2.980e^-4	1	INTRON CG8086	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15286751	3L_15286751_SNP [dm3] 3L_15293651_SNP [dm6]	C	A	2.984e^-4	1	INTERGENIC
2L	10123496	2L_10123496_SNP [dm3] 2L_10123496_SNP [dm6]	G	A	2.986e^-4	1	UPSTREAM CG13135 INTRON CG44153 & 1 other
3L	12836927	3L_12836927_SNP [dm3] 3L_12843827_SNP [dm6]	C	T	2.991e^-4	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
3R	21487248	3R_21487248_SNP [dm3] 3R_25661526_SNP [dm6]	T	A	3.002e^-4	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8271052	2L_8271052_DEL [dm3] 2L_8271052_DEL [dm6]	AA	T	3.004e^-4	1	INTRON Btk29A
3L	5220659	3L_5220659_SNP [dm3] 3L_5227559_SNP [dm6]	T	G	3.005e^-4	1	INTRON shep
2R	7847126	2R_7847126_SNP [dm3] 2R_11959621_SNP [dm6]	C	A	3.005e^-4	1	INTRON CG13188
2L	16509819	2L_16509819_SNP [dm3] 2L_16509819_SNP [dm6]	T	A	3.010e^-4	1	UTR_3_PRIME CG5953	TF binding site mE1_TFBS_cad
2L	7947487	2L_7947487_SNP [dm3] 2L_7947487_SNP [dm6]	G	A	3.013e^-4	1	INTRON Snoo
2R	11471922	2R_11471922_SNP [dm3] 2R_15584417_SNP [dm6]	G	C	3.016e^-4	1	INTERGENIC
X	20649495	X_20649495_SNP [dm3] X_20778468_SNP [dm6]	T	C	3.025e^-4	1	INTRON shakB
2L	6700274	2L_6700274_SNP [dm3] 2L_6700274_SNP [dm6]	C	T	3.036e^-4	1	SYNONYMOUS_CODING Tsp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8330350	2L_8330350_SNP [dm3] 2L_8330350_SNP [dm6]	T	C	3.041e^-4	1	INTRON CG14275
2L	845334	2L_845334_SNP [dm3] 2L_845334_SNP [dm6]	T	A	3.043e^-4	1	INTRON drongo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9541907	3L_9541907_SNP [dm3] 3L_9548807_SNP [dm6]	C	T	3.044e^-4	1	INTRON CG42673
X	21507982	X_21507982_SNP [dm3] X_21636955_SNP [dm6]	G	A	3.044e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4270114	2R_4270114_SNP [dm3] 2R_8382609_SNP [dm6]	T	C	3.069e^-4	1	INTRON pdm3	TF binding site mE1_TFBS_HSA
2R	16914633	2R_16914633_SNP [dm3] 2R_21027128_SNP [dm6]	A	G	3.074e^-4	1	INTERGENIC
3R	23845444	3R_23845444_SNP [dm3] 3R_28019722_SNP [dm6]	C	T	3.079e^-4	1	INTERGENIC
3L	8608808	3L_8608808_SNP [dm3] 3L_8615708_SNP [dm6]	G	A	3.084e^-4	1	SYNONYMOUS_CODING CG6282 UTR_3_PRIME CG6282
3L	12071134	3L_12071134_SNP [dm3] 3L_12078034_SNP [dm6]	T	A	3.084e^-4	1	INTRON Sema-5c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	20654363	X_20654363_SNP [dm3] X_20783336_SNP [dm6]	T	G	3.086e^-4	1	INTRON shakB
X	4852941	X_4852941_INS [dm3] X_4958908_INS [dm6]	A	AAAAGCCA	3.087e^-4	1	INTRON CR44833
3R	21487749	3R_21487749_SNP [dm3] 3R_25662027_SNP [dm6]	T	C	3.090e^-4	1	UTR_5_PRIME RASSF8 UPSTREAM Tnks EXON CR45208	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	16756079	2R_16756079_SNP [dm3] 2R_20868574_SNP [dm6]	T	A	3.098e^-4	1	UTR_3_PRIME IM4 DOWNSTREAM IM4
3R	2720850	3R_2720850_SNP [dm3] 3R_6895128_SNP [dm6]	C	T	3.102e^-4	1	DOWNSTREAM CR44932 INTERGENIC	regulatory region FlyBase REDfly_CRMs
X	20774353	X_20774353_SNP [dm3] X_20903326_SNP [dm6]	C	A	3.107e^-4	1	INTRON shakB
3R	9998140	3R_9998140_SNP [dm3] 3R_14172418_SNP [dm6]	A	T	3.108e^-4	1	UTR_3_PRIME Dop1R1
3R	21138833	3R_21138833_SNP [dm3] 3R_25313111_SNP [dm6]	A	G	3.115e^-4	1	INTRON CG31087
3L	11153856	3L_11153856_SNP [dm3] 3L_11160756_SNP [dm6]	T	C	3.122e^-4	1	INTRON CG32082
3L	1625254	3L_1625254_SNP [dm3] 3L_1625254_SNP [dm6]	C	T	3.139e^-4	1	SYNONYMOUS_CODING GC DOWNSTREAM CG13928	TF binding site mE1_TFBS_cad
2L	11890597	2L_11890597_SNP [dm3] 2L_11890597_SNP [dm6]	A	G	3.140e^-4	1	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5813760	2L_5813760_SNP [dm3] 2L_5813760_SNP [dm6]	C	T	3.143e^-4	1	INTERGENIC
X	14923979	X_14923979_SNP [dm3] X_15029946_SNP [dm6]	A	G	3.146e^-4	1	INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20462134	3R_20462134_SNP [dm3] 3R_24636412_SNP [dm6]	A	G	3.149e^-4	1	SYNONYMOUS_CODING puf UTR_3_PRIME puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5443552	2L_5443552_SNP [dm3] 2L_5443552_SNP [dm6]	A	G	3.155e^-4	1	INTERGENIC
3L	8385793	3L_8385793_SNP [dm3] 3L_8392693_SNP [dm6]	C	A	3.155e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
X	5580549	X_5580549_SNP [dm3] X_5686516_SNP [dm6]	T	C	3.167e^-4	1	NON_SYNONYMOUS_CODING CG3160
X	20653818	X_20653818_SNP [dm3] X_20782791_SNP [dm6]	T	A	3.168e^-4	1	INTRON shakB	transposable element FlyBase
3R	21487429	3R_21487429_SNP [dm3] 3R_25661707_SNP [dm6]	C	A	3.177e^-4	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	19192612	2L_19192612_SNP [dm3] 2L_19192612_SNP [dm6]	G	A	3.187e^-4	1	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	2969585	2R_2969585_INS [dm3] 2R_7082080_INS [dm6]	G	GG	3.195e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	3046290	2R_3046290_SNP [dm3] 2R_7158785_SNP [dm6]	A	G	3.202e^-4	1	UPSTREAM nec INTRON pk	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_Trl
3R	15115174	3R_15115174_SNP [dm3] 3R_19289452_SNP [dm6]	T	A	3.210e^-4	1	DOWNSTREAM CR43451 INTERGENIC
2R	19442347	2R_19442347_SNP [dm3] 2R_23554824_SNP [dm6]	T	C	3.217e^-4	1	UPSTREAM pita DOWNSTREAM Rrp4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19442305	2R_19442305_SNP [dm3] 2R_23554782_SNP [dm6]	T	C	3.218e^-4	1	UPSTREAM pita DOWNSTREAM Rrp4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12331962	2L_12331962_SNP [dm3] 2L_12331962_SNP [dm6]	A	C	3.225e^-4	1	INTERGENIC
3L	9985488	3L_9985488_SNP [dm3] 3L_9992388_SNP [dm6]	C	A	3.227e^-4	1	INTRON dpr6
3L	1139879	3L_1139879_SNP [dm3] 3L_1139879_SNP [dm6]	C	G	3.228e^-4	1	DOWNSTREAM bab2 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12452009	2R_12452009_SNP [dm3] 2R_16564504_SNP [dm6]	G	T	3.230e^-4	1	INTRON DAT
3L	6093401	3L_6093401_SNP [dm3] 3L_6100301_SNP [dm6]	T	A	3.231e^-4	1	INTRON Ets65A
3L	6093402	3L_6093402_SNP [dm3] 3L_6100302_SNP [dm6]	C	G	3.231e^-4	1	INTRON Ets65A
3L	8032660	3L_8032660_SNP [dm3] 3L_8039560_SNP [dm6]	C	G	3.240e^-4	1	INTRON nmo	TF binding site mE1_TFBS_inv
2R	18601522	2R_18601522_INS [dm3] 2R_22714017_INS [dm6]	T	TT	3.243e^-4	1	SPLICE_SITE_REGION CG30268 INTRON CG30268	TF binding site BDTNP1_TFBS_twi
X	4780770	X_4780770_SNP [dm3] X_4886737_SNP [dm6]	G	A	3.247e^-4	1	INTRON CG42594
2L	8502836	2L_8502836_DEL [dm3] 2L_8502836_DEL [dm6]	TTTTC	T	3.251e^-4	1	INTRON Dh31
2R	10772923	2R_10772923_SNP [dm3] 2R_14885418_SNP [dm6]	G	A	3.261e^-4	1	SYNONYMOUS_CODING Cyp6a21
3L	1417651	3L_1417651_SNP [dm3] 3L_1417651_SNP [dm6]	T	C	3.270e^-4	1	SYNONYMOUS_CODING FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
X	5865266	X_5865266_SNP [dm3] X_5971233_SNP [dm6]	C	T	3.300e^-4	1	INTRON Grip
2R	1253853	2R_1253853_SNP [dm3] 2R_5366348_SNP [dm6]	G	T	3.303e^-4	1	INTRON CR42646
X	8617053	X_8617053_SNP [dm3] X_8723020_SNP [dm6]	A	G	3.303e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17625290	2R_17625290_SNP [dm3] 2R_21737785_SNP [dm6]	A	T	3.309e^-4	1	INTERGENIC
2L	9884618	2L_9884618_SNP [dm3] 2L_9884618_SNP [dm6]	A	T	3.314e^-4	1	INTRON nAChRalpha6
2L	13585438	2L_13585438_SNP [dm3] 2L_13585438_SNP [dm6]	C	T	3.314e^-4	1	INTRON kuz
2L	8267111	2L_8267111_SNP [dm3] 2L_8267111_SNP [dm6]	A	T	3.319e^-4	1	INTRON Btk29A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	513089	3L_513089_DEL [dm3] 3L_513089_DEL [dm6]	GATGCGCATTTTCTTGC...	G	3.320e^-4	1	INTRON klar
3R	21487365	3R_21487365_SNP [dm3] 3R_25661643_SNP [dm6]	C	T	3.321e^-4	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21487367	3R_21487367_SNP [dm3] 3R_25661645_SNP [dm6]	A	T	3.321e^-4	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21487374	3R_21487374_SNP [dm3] 3R_25661652_SNP [dm6]	G	A	3.321e^-4	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	15311505	X_15311505_SNP [dm3] X_15417472_SNP [dm6]	C	A	3.325e^-4	1	INTRON Cngl
2R	12034933	2R_12034933_SNP [dm3] 2R_16147428_SNP [dm6]	A	G	3.335e^-4	1	SYNONYMOUS_CODING Ext2	TF binding site mE1_TFBS_sens
3R	15104329	3R_15104329_SNP [dm3] 3R_19278607_SNP [dm6]	T	C	3.347e^-4	1	DOWNSTREAM CR44173 INTERGENIC
2L	7753896	2L_7753896_SNP [dm3] 2L_7753896_SNP [dm6]	A	G	3.348e^-4	1	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
3L	9253243	3L_9253243_SNP [dm3] 3L_9260143_SNP [dm6]	T	C	3.348e^-4	1	INTRON GluRIB
3R	21487350	3R_21487350_SNP [dm3] 3R_25661628_SNP [dm6]	G	C	3.355e^-4	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17937169	3L_17937169_MNP [dm3] 3L_17944069_MNP [dm6]	AAA	TTG	3.356e^-4	1	INTRON CG43174
2L	6295620	2L_6295620_SNP [dm3] 2L_6295620_SNP [dm6]	T	C	3.358e^-4	1	INTRON Ddr
X	15311523	X_15311523_SNP [dm3] X_15417490_SNP [dm6]	A	G	3.374e^-4	1	INTRON Cngl
3L	8385554	3L_8385554_SNP [dm3] 3L_8392454_SNP [dm6]	T	C	3.379e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	12057996	3L_12057996_SNP [dm3] 3L_12064896_SNP [dm6]	C	T	3.382e^-4	1	UPSTREAM rols INTERGENIC
X	685089	X_685089_SNP [dm3] X_791056_SNP [dm6]	A	G	3.391e^-4	1	UPSTREAM CG13360 & 1 other INTERGENIC	TF binding site mE1_TFBS_sens
3L	14383275	3L_14383275_SNP [dm3] 3L_14390175_SNP [dm6]	T	A	3.393e^-4	1	INTERGENIC
2R	16805038	2R_16805038_SNP [dm3] 2R_20917533_SNP [dm6]	T	G	3.408e^-4	1	INTRON Rx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	18147600	3L_18147600_DEL [dm3] 3L_18154500_DEL [dm6]	AA	A	3.410e^-4	1	DOWNSTREAM CG7330 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24024545	3R_24024545_SNP [dm3] 3R_28198823_SNP [dm6]	A	T	3.411e^-4	1	INTRON CG34354
2L	13205887	2L_13205887_SNP [dm3] 2L_13205887_SNP [dm6]	G	A	3.414e^-4	1	INTRON Pect	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11701916	2R_11701916_SNP [dm3] 2R_15814411_SNP [dm6]	G	A	3.428e^-4	1	INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15458151	2L_15458151_SNP [dm3] 2L_15458151_SNP [dm6]	G	A	3.433e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	21364694	3R_21364694_SNP [dm3] 3R_25538972_SNP [dm6]	A	C	3.433e^-4	1	INTRON msi
X	15311537	X_15311537_SNP [dm3] X_15417504_SNP [dm6]	A	T	3.438e^-4	1	INTRON Cngl
2R	19059819	2R_19059819_SNP [dm3] 2R_23172296_SNP [dm6]	G	T	3.445e^-4	1	INTRON CG34371	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12727426	2L_12727426_SNP [dm3] 2L_12727426_SNP [dm6]	G	A	3.461e^-4	1	INTRON MRP
2L	9708661	2L_9708661_SNP [dm3] 2L_9708661_SNP [dm6]	T	C	3.462e^-4	1	UTR_3_PRIME pelo DOWNSTREAM CG4364	TF binding site mE1_TFBS_HSA
3R	22746282	3R_22746282_SNP [dm3] 3R_26920560_SNP [dm6]	G	A	3.470e^-4	1	INTRON sda
3L	16922016	3L_16922016_SNP [dm3] 3L_16928916_SNP [dm6]	T	C	3.478e^-4	1	SYNONYMOUS_CODING CG11905 DOWNSTREAM CG11905	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15458131	2L_15458131_SNP [dm3] 2L_15458131_SNP [dm6]	C	A	3.478e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	8268039	2L_8268039_SNP [dm3] 2L_8268039_SNP [dm6]	G	A	3.480e^-4	1	INTRON Btk29A	TF binding site mE1_TFBS_D
2R	7718698	2R_7718698_SNP [dm3] 2R_11831193_SNP [dm6]	T	C	3.481e^-4	1	INTRON Sobp
2L	8502822	2L_8502822_DEL [dm3] 2L_8502822_DEL [dm6]	TACGTTTCATT...	GG	3.490e^-4	1	INTRON Dh31
2L	8502858	2L_8502858_SNP [dm3] 2L_8502858_SNP [dm6]	A	C	3.490e^-4	1	INTRON Dh31
2R	18310407	2R_18310407_SNP [dm3] 2R_22422902_SNP [dm6]	C	A	3.490e^-4	1	SYNONYMOUS_CODING rad50	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15311515	X_15311515_SNP [dm3] X_15417482_SNP [dm6]	G	C	3.502e^-4	1	INTRON Cngl
2L	9708581	2L_9708581_SNP [dm3] 2L_9708581_SNP [dm6]	C	T	3.508e^-4	1	UTR_3_PRIME pelo DOWNSTREAM CG4364	TF binding site mE1_TFBS_HSA
3R	20487956	3R_20487956_SNP [dm3] 3R_24662234_SNP [dm6]	T	G	3.513e^-4	1	UPSTREAM slo & 1 other INTERGENIC	regulatory region REDfly_CRMs
2R	13046178	2R_13046178_SNP [dm3] 2R_17158673_SNP [dm6]	G	T	3.514e^-4	1	SYNONYMOUS_CODING CG30458 UPSTREAM CG17287	TF binding site mE1_TFBS_cad
3L	2180936	3L_2180936_SNP [dm3] 3L_2180936_SNP [dm6]	G	T	3.530e^-4	1	INTERGENIC
2L	15641089	2L_15641089_SNP [dm3] 2L_15641089_SNP [dm6]	A	C	3.539e^-4	1	INTERGENIC
3L	513017	3L_513017_SNP [dm3] 3L_513017_SNP [dm6]	C	A	3.540e^-4	1	INTRON klar
3L	11045373	3L_11045373_SNP [dm3] 3L_11052273_SNP [dm6]	A	T	3.540e^-4	1	UPSTREAM CG43693 INTERGENIC
2R	12660221	2R_12660221_SNP [dm3] 2R_16772716_SNP [dm6]	T	C	3.543e^-4	1	UPSTREAM unc-104 DOWNSTREAM Sod2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	1664890	3R_1664890_SNP [dm3] 3R_5839168_SNP [dm6]	G	A	3.543e^-4	1	DOWNSTREAM CG1208 INTERGENIC
2R	9658051	2R_9658051_DEL [dm3] 2R_13770546_DEL [dm6]	TTC	T	3.545e^-4	1	INTRON Cpr50Ca	TF binding site mE1_TFBS_HSA
3R	3483863	3R_3483863_SNP [dm3] 3R_7658141_SNP [dm6]	C	G	3.555e^-4	1	UPSTREAM Nlg1 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1354425	3L_1354425_SNP [dm3] 3L_1354425_SNP [dm6]	G	C	3.563e^-4	1	INTRON Ptp61F
2R	6244285	2R_6244285_SNP [dm3] 2R_10356780_SNP [dm6]	G	A	3.565e^-4	1	UTR_5_PRIME CG42733 UPSTREAM CG12902 & 1 other INTRON CG42732
X	10297181	X_10297181_SNP [dm3] X_10403148_SNP [dm6]	A	G	3.566e^-4	1	INTRON flw
3R	15104668	3R_15104668_SNP [dm3] 3R_19278946_SNP [dm6]	G	C	3.570e^-4	1	EXON CR44173
3L	7105632	3L_7105632_SNP [dm3] 3L_7112532_SNP [dm6]	C	A	3.580e^-4	1	INTRON form3
3R	22746286	3R_22746286_SNP [dm3] 3R_26920564_SNP [dm6]	T	C	3.581e^-4	1	INTRON sda
3L	18398897	3L_18398897_SNP [dm3] 3L_18405797_SNP [dm6]	C	A	3.586e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	2892875	3L_2892875_SNP [dm3] 3L_2892875_SNP [dm6]	A	G	3.602e^-4	1	UPSTREAM spz5 INTERGENIC
2L	16482191	2L_16482191_SNP [dm3] 2L_16482191_SNP [dm6]	C	G	3.608e^-4	1	INTRON dac	regulatory region REDfly_CRMs
2L	7452245	2L_7452245_SNP [dm3] 2L_7452245_SNP [dm6]	C	T	3.612e^-4	1	DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2R	10336650	2R_10336650_SNP [dm3] 2R_14449145_SNP [dm6]	T	C	3.619e^-4	1	INTRON Oaz	TF binding site mE1_TFBS_Trl
3R	21487380	3R_21487380_SNP [dm3] 3R_25661658_SNP [dm6]	A	G	3.625e^-4	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8891144	3L_8891144_SNP [dm3] 3L_8898044_SNP [dm6]	T	C	3.627e^-4	1	INTRON TrpA1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26020026	3R_26020026_SNP [dm3] 3R_30194304_SNP [dm6]	G	T	3.634e^-4	1	DOWNSTREAM CG15531 INTERGENIC
2R	18600400	2R_18600400_SNP [dm3] 2R_22712895_SNP [dm6]	C	T	3.635e^-4	1	SYNONYMOUS_CODING CG30268 DOWNSTREAM CG30275
2L	11163612	2L_11163612_SNP [dm3] 2L_11163612_SNP [dm6]	G	A	3.636e^-4	1	SYNONYMOUS_CODING Ca-beta
2L	6936486	2L_6936486_SNP [dm3] 2L_6936486_SNP [dm6]	T	G	3.637e^-4	1	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20471805	3R_20471805_SNP [dm3] 3R_24646083_SNP [dm6]	G	C	3.643e^-4	1	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2448200	X_2448200_SNP [dm3] X_2554167_SNP [dm6]	T	G	3.645e^-4	1	UTR_5_PRIME Pdfr INTRON Pdfr	TF binding site mE1_TFBS_chinmo
3L	23064885	3L_23064885_DEL [dm3] 3L_23071785_DEL [dm6]	GAG	T	3.667e^-4	1	INTERGENIC	transposable element FlyBase
3L	7484430	3L_7484430_SNP [dm3] 3L_7491330_SNP [dm6]	G	A	3.673e^-4	1	UPSTREAM Cyp316a1 INTERGENIC
3R	21487159	3R_21487159_SNP [dm3] 3R_25661437_SNP [dm6]	T	A	3.681e^-4	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25331557	3R_25331557_SNP [dm3] 3R_29505835_SNP [dm6]	A	G	3.695e^-4	1	INTERGENIC
2R	19144239	2R_19144239_SNP [dm3] 2R_23256716_SNP [dm6]	A	C	3.699e^-4	1	INTERGENIC
2L	7583060	2L_7583060_SNP [dm3] 2L_7583060_SNP [dm6]	G	C	3.704e^-4	1	INTRON Spn28B
3L	8385844	3L_8385844_SNP [dm3] 3L_8392744_SNP [dm6]	A	T	3.706e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
3L	11045343	3L_11045343_SNP [dm3] 3L_11052243_SNP [dm6]	A	C	3.710e^-4	1	UPSTREAM CG43693 INTERGENIC
2R	8942627	2R_8942627_SNP [dm3] 2R_13055122_SNP [dm6]	T	A	3.711e^-4	1	DOWNSTREAM Drl-2 INTERGENIC
2R	12035551	2R_12035551_SNP [dm3] 2R_16148046_SNP [dm6]	G	A	3.724e^-4	1	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7903130	3L_7903130_SNP [dm3] 3L_7910030_SNP [dm6]	C	A	3.727e^-4	1	UPSTREAM pbl INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13146355	2R_13146355_SNP [dm3] 2R_17258850_SNP [dm6]	G	C	3.735e^-4	1	UPSTREAM CG43108 INTRON mbl
X	14078372	X_14078372_SNP [dm3] X_14184339_SNP [dm6]	G	C	3.736e^-4	1	UPSTREAM CG32603 INTERGENIC
2R	12807749	2R_12807749_SNP [dm3] 2R_16920244_SNP [dm6]	C	A	3.737e^-4	1	INTERGENIC
X	691211	X_691211_SNP [dm3] X_797178_SNP [dm6]	A	G	3.748e^-4	1	UTR_3_PRIME Rbf DOWNSTREAM CG16989	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16707027	2R_16707027_SNP [dm3] 2R_20819522_SNP [dm6]	A	C	3.750e^-4	1	INTERGENIC
2R	4460951	2R_4460951_SNP [dm3] 2R_8573446_SNP [dm6]	G	A	3.757e^-4	1	UTR_3_PRIME CG42326	TF binding site mE1_TFBS_cad
2L	8245991	2L_8245991_SNP [dm3] 2L_8245991_SNP [dm6]	C	G	3.762e^-4	1	SYNONYMOUS_CODING CG8086 INTRON CG8086
2L	5443808	2L_5443808_SNP [dm3] 2L_5443808_SNP [dm6]	A	G	3.766e^-4	1	INTERGENIC
X	8710356	X_8710356_SNP [dm3] X_8816323_SNP [dm6]	C	G	3.781e^-4	1	INTERGENIC
2R	17716128	2R_17716128_SNP [dm3] 2R_21828623_SNP [dm6]	A	G	3.788e^-4	1	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad
X	20653748	X_20653748_SNP [dm3] X_20782721_SNP [dm6]	G	A	3.799e^-4	1	INTRON shakB
2R	19442673	2R_19442673_SNP [dm3] 2R_23555150_SNP [dm6]	T	A	3.802e^-4	1	UTR_3_PRIME Rrp4 UPSTREAM pita	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	16785980	X_16785980_SNP [dm3] X_16891947_SNP [dm6]	G	A	3.807e^-4	1	INTERGENIC
3R	21648663	3R_21648663_SNP [dm3] 3R_25822941_SNP [dm6]	A	G	3.809e^-4	1	DOWNSTREAM CR44949 INTERGENIC
3R	2788189	3R_2788189_SNP [dm3] 3R_6962467_SNP [dm6]	G	A	3.820e^-4	1	INTRON Antp	TF binding site BDTNP1_TFBS_dl
3L	11341295	3L_11341295_SNP [dm3] 3L_11348195_SNP [dm6]	C	T	3.828e^-4	1	INTERGENIC
3L	15746245	3L_15746245_SNP [dm3] 3L_15753145_SNP [dm6]	G	A	3.834e^-4	1	INTERGENIC
3R	13939223	3R_13939223_SNP [dm3] 3R_18113501_SNP [dm6]	G	A	3.852e^-4	1	INTRON sr
2R	13419350	2R_13419350_SNP [dm3] 2R_17531845_SNP [dm6]	A	T	3.854e^-4	1	INTRON Patronin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13249774	X_13249774_SNP [dm3] X_13355741_SNP [dm6]	G	A	3.856e^-4	1	INTERGENIC
2R	12374322	2R_12374322_SNP [dm3] 2R_16486817_SNP [dm6]	C	T	3.861e^-4	1	SYNONYMOUS_CODING CG33458
2L	8284389	2L_8284389_SNP [dm3] 2L_8284389_SNP [dm6]	C	T	3.874e^-4	1	INTRON Btk29A	TF binding site mE1_TFBS_inv
3L	14176899	3L_14176899_SNP [dm3] 3L_14183799_SNP [dm6]	G	A	3.874e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	512244	2L_512244_DEL [dm3] 2L_512244_DEL [dm6]	TC	A	3.874e^-4	1	INTRON ush	regulatory region REDfly_CRMs
2R	15905848	2R_15905848_SNP [dm3] 2R_20018343_SNP [dm6]	T	C	3.879e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8384927	3L_8384927_SNP [dm3] 3L_8391827_SNP [dm6]	A	C	3.880e^-4	1	SYNONYMOUS_CODING Jon66Ci DOWNSTREAM ImpE1 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12552638	2R_12552638_SNP [dm3] 2R_16665133_SNP [dm6]	A	G	3.908e^-4	1	INTRON Picot
3L	9538041	3L_9538041_SNP [dm3] 3L_9544941_SNP [dm6]	C	A	3.918e^-4	1	UPSTREAM Ir67a INTERGENIC
3L	8771125	3L_8771125_SNP [dm3] 3L_8778025_SNP [dm6]	G	T	3.922e^-4	1	INTRON Fhos
X	4780550	X_4780550_SNP [dm3] X_4886517_SNP [dm6]	C	A	3.928e^-4	1	INTRON CG42594
X	13777425	X_13777425_SNP [dm3] X_13883392_SNP [dm6]	T	C	3.930e^-4	1	INTRON mamo	TF binding site mE1_TFBS_chinmo
X	4463006	X_4463006_SNP [dm3] X_4568973_SNP [dm6]	A	C	3.932e^-4	1	INTRON CR32773
3R	23391753	3R_23391753_SNP [dm3] 3R_27566031_SNP [dm6]	T	C	3.935e^-4	1	SYNONYMOUS_CODING wdb	TF binding site mE1_TFBS_sens
3R	20817178	3R_20817178_SNP [dm3] 3R_24991456_SNP [dm6]	G	T	3.936e^-4	1	INTRON tnc
2R	6247033	2R_6247033_SNP [dm3] 2R_10359528_SNP [dm6]	A	G	3.939e^-4	1	UPSTREAM CG43396 INTRON CG42732	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17119465	2R_17119465_SNP [dm3] 2R_21231960_SNP [dm6]	G	A	3.942e^-4	1	INTRON ASPP
3L	1838008	3L_1838008_SNP [dm3] 3L_1838008_SNP [dm6]	T	G	3.947e^-4	1	INTERGENIC
X	18424708	X_18424708_SNP [dm3] X_18530675_SNP [dm6]	G	T	3.951e^-4	1	INTRON Bx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	4001401	2L_4001401_SNP [dm3] 2L_4001401_SNP [dm6]	T	C	3.959e^-4	1	DOWNSTREAM CG43797 EXON CR45344	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	14440484	3L_14440484_SNP [dm3] 3L_14447384_SNP [dm6]	C	T	3.962e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	9993632	3L_9993632_SNP [dm3] 3L_10000532_SNP [dm6]	C	T	3.968e^-4	1	INTRON dpr6
X	5306140	X_5306140_SNP [dm3] X_5412107_SNP [dm6]	T	C	3.979e^-4	1	DOWNSTREAM spoon INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	9631893	2R_9631893_SNP [dm3] 2R_13744388_SNP [dm6]	T	A	3.988e^-4	1	INTRON fas
X	8710360	X_8710360_SNP [dm3] X_8816327_SNP [dm6]	A	G	3.992e^-4	1	INTERGENIC
2L	5820540	2L_5820540_SNP [dm3] 2L_5820540_SNP [dm6]	C	T	4.010e^-4	1	INTERGENIC
2L	5348860	2L_5348860_SNP [dm3] 2L_5348860_SNP [dm6]	C	T	4.013e^-4	1	INTRON nompC
2L	7965590	2L_7965590_SNP [dm3] 2L_7965590_SNP [dm6]	T	C	4.020e^-4	1	INTRON Snoo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3095244	2R_3095244_SNP [dm3] 2R_7207739_SNP [dm6]	G	T	4.021e^-4	1	INTRON pk
2L	16386543	2L_16386543_SNP [dm3] 2L_16386543_SNP [dm6]	T	A	4.034e^-4	1	INTERGENIC
3L	1799721	3L_1799721_SNP [dm3] 3L_1799721_SNP [dm6]	C	A	4.057e^-4	1	SYNONYMOUS_CODING Patj	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1752624	3L_1752624_SNP [dm3] 3L_1752624_SNP [dm6]	C	A	4.059e^-4	1	UTR_3_PRIME Cht2 DOWNSTREAM CG13921	TF binding site mE1_TFBS_cad
2L	12727826	2L_12727826_SNP [dm3] 2L_12727826_SNP [dm6]	T	A	4.065e^-4	1	INTRON MRP
3R	23681568	3R_23681568_SNP [dm3] 3R_27855846_SNP [dm6]	C	A	4.071e^-4	1	INTRON CG34353
3L	13298278	3L_13298278_SNP [dm3] 3L_13305178_SNP [dm6]	T	C	4.076e^-4	1	INTERGENIC
2R	19113682	2R_19113682_SNP [dm3] 2R_23226159_SNP [dm6]	G	A	4.093e^-4	1	INTERGENIC
2R	10518373	2R_10518373_SNP [dm3] 2R_14630868_SNP [dm6]	G	A	4.095e^-4	1	NON_SYNONYMOUS_CODING CG10131
2L	8511481	2L_8511481_SNP [dm3] 2L_8511481_SNP [dm6]	C	G	4.107e^-4	1	SYNONYMOUS_CODING CG13096 DOWNSTREAM CG13097	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3197182	2R_3197182_SNP [dm3] 2R_7309677_SNP [dm6]	T	G	4.114e^-4	1	INTERGENIC
2R	9166329	2R_9166329_SNP [dm3] 2R_13278824_SNP [dm6]	A	T	4.114e^-4	1	INTRON Dh31-R
3R	15919463	3R_15919463_SNP [dm3] 3R_20093741_SNP [dm6]	C	G	4.129e^-4	1	INTERGENIC
3R	3479630	3R_3479630_SNP [dm3] 3R_7653908_SNP [dm6]	T	G	4.130e^-4	1	INTERGENIC
X	20982446	X_20982446_SNP [dm3] X_21111419_SNP [dm6]	A	C	4.135e^-4	1	UTR_3_PRIME unc DOWNSTREAM stg1 & 1 other	TF binding site mE1_TFBS_chinmo
2L	11882111	2L_11882111_SNP [dm3] 2L_11882111_SNP [dm6]	T	A	4.140e^-4	1	INTRON Pde1c
3L	10514506	3L_10514506_SNP [dm3] 3L_10521406_SNP [dm6]	A	T	4.155e^-4	1	INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	16355149	X_16355149_SNP [dm3] X_16461116_SNP [dm6]	A	G	4.160e^-4	1	UTR_3_PRIME para
X	21050764	X_21050764_SNP [dm3] X_21179737_SNP [dm6]	G	A	4.165e^-4	1	INTERGENIC
2R	19114630	2R_19114630_SNP [dm3] 2R_23227107_SNP [dm6]	T	C	4.168e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9360353	3L_9360353_SNP [dm3] 3L_9367253_SNP [dm6]	T	C	4.188e^-4	1	UPSTREAM CG4452 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
3L	7106793	3L_7106793_DEL [dm3] 3L_7113693_DEL [dm6]	CT	C	4.196e^-4	1	INTRON form3
3R	26037174	3R_26037174_SNP [dm3] 3R_30211452_SNP [dm6]	T	C	4.197e^-4	1	UPSTREAM Cec-Psi1 & 1 other DOWNSTREAM CecA1 INTERGENIC
3L	6595427	3L_6595427_SNP [dm3] 3L_6602327_SNP [dm6]	C	T	4.197e^-4	1	NON_SYNONYMOUS_CODING ndl
3L	11341705	3L_11341705_SNP [dm3] 3L_11348605_SNP [dm6]	A	T	4.200e^-4	1	DOWNSTREAM CR45251 INTERGENIC
2L	18274875	2L_18274875_SNP [dm3] 2L_18274875_SNP [dm6]	A	C	4.201e^-4	1	INTRON CG42750
3L	7538007	3L_7538007_SNP [dm3] 3L_7544907_SNP [dm6]	T	A	4.206e^-4	1	INTERGENIC
3R	21648642	3R_21648642_SNP [dm3] 3R_25822920_SNP [dm6]	T	C	4.214e^-4	1	DOWNSTREAM CR44949 INTERGENIC
X	3943133	X_3943133_SNP [dm3] X_4049100_SNP [dm6]	C	A	4.219e^-4	1	EXON CR45482
3L	8741998	3L_8741998_SNP [dm3] 3L_8748898_SNP [dm6]	A	G	4.232e^-4	1	DOWNSTREAM CG13306 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	9997584	3R_9997584_SNP [dm3] 3R_14171862_SNP [dm6]	A	C	4.234e^-4	1	UTR_3_PRIME Dop1R1
3R	26009143	3R_26009143_SNP [dm3] 3R_30183421_SNP [dm6]	T	A	4.237e^-4	1	DOWNSTREAM CR44262 INTERGENIC
3R	15104945	3R_15104945_SNP [dm3] 3R_19279223_SNP [dm6]	A	T	4.243e^-4	1	EXON CR44173
2R	9654537	2R_9654537_SNP [dm3] 2R_13767032_SNP [dm6]	G	C	4.272e^-4	1	INTERGENIC
3R	21487405	3R_21487405_SNP [dm3] 3R_25661683_SNP [dm6]	C	T	4.274e^-4	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	5589162	X_5589162_SNP [dm3] X_5695129_SNP [dm6]	T	G	4.279e^-4	1	UTR_5_PRIME CG3149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	5589223	X_5589223_SNP [dm3] X_5695190_SNP [dm6]	G	T	4.279e^-4	1	UTR_5_PRIME CG3149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	5589232	X_5589232_SNP [dm3] X_5695199_SNP [dm6]	G	A	4.279e^-4	1	UTR_5_PRIME CG3149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	5427449	X_5427449_SNP [dm3] X_5533416_SNP [dm6]	C	T	4.284e^-4	1	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1508473	2L_1508473_SNP [dm3] 2L_1508473_SNP [dm6]	C	A	4.289e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3117436	3L_3117436_SNP [dm3] 3L_3117436_SNP [dm6]	G	A	4.293e^-4	1	DOWNSTREAM prominin-like INTRON prominin-like
3R	21487099	3R_21487099_SNP [dm3] 3R_25661377_SNP [dm6]	C	A	4.295e^-4	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12727456	2L_12727456_SNP [dm3] 2L_12727456_SNP [dm6]	A	G	4.303e^-4	1	INTRON MRP
X	15311533	X_15311533_SNP [dm3] X_15417500_SNP [dm6]	C	T	4.305e^-4	1	INTRON Cngl
3L	9758859	3L_9758859_SNP [dm3] 3L_9765759_SNP [dm6]	A	C	4.305e^-4	1	UTR_5_PRIME CG8177 INTRON CG8177
3L	4515439	3L_4515439_SNP [dm3] 3L_4515439_SNP [dm6]	C	A	4.323e^-4	1	INTRON Tie
3L	1817301	3L_1817301_SNP [dm3] 3L_1817301_SNP [dm6]	A	G	4.326e^-4	1	INTRON GV1
2R	6982015	2R_6982015_INS [dm3] 2R_11094510_INS [dm6]	T	TT	4.326e^-4	1	INTRON luna	TF binding site mE1_TFBS_sens
2R	6982114	2R_6982114_SNP [dm3] 2R_11094609_SNP [dm6]	A	T	4.331e^-4	1	INTRON luna
2R	6673351	2R_6673351_SNP [dm3] 2R_10785846_SNP [dm6]	T	C	4.346e^-4	1	DOWNSTREAM CR44301 & 1 other INTRON CG33144 EXON CR44300
2R	18393111	2R_18393111_SNP [dm3] 2R_22505606_SNP [dm6]	T	A	4.347e^-4	1	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6164259	2R_6164259_SNP [dm3] 2R_10276754_SNP [dm6]	T	C	4.347e^-4	1	UTR_5_PRIME CAP INTRON CAP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9546781	3L_9546781_INS [dm3] 3L_9553681_INS [dm6]	A	CCACTGGC	4.352e^-4	1	INTRON CG42673
3L	982310	3L_982310_SNP [dm3] 3L_982310_SNP [dm6]	G	T	4.356e^-4	1	NON_SYNONYMOUS_CODING Glut1 UTR_3_PRIME Glut1 INTRON Glut1
2L	7753926	2L_7753926_DEL [dm3] 2L_7753926_DEL [dm6]	TT	T	4.362e^-4	1	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
X	17709822	X_17709822_SNP [dm3] X_17815789_SNP [dm6]	G	A	4.366e^-4	1	INTERGENIC
X	20223003	X_20223003_SNP [dm3] X_20351976_SNP [dm6]	T	A	4.378e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10305686	2L_10305686_SNP [dm3] 2L_10305686_SNP [dm6]	G	A	4.388e^-4	1	INTRON CG5390	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
2L	11200815	2L_11200815_SNP [dm3] 2L_11200815_SNP [dm6]	A	T	4.401e^-4	1	INTRON Ca-beta
X	4286663	X_4286663_INS [dm3] X_4392630_INS [dm6]	A	AGAAGACAGCAA...	4.424e^-4	1	INTRON CR32773
3L	5925483	3L_5925483_SNP [dm3] 3L_5932383_SNP [dm6]	A	T	4.428e^-4	1	DOWNSTREAM CG33993 INTRON Rcc1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	716844	2L_716844_SNP [dm3] 2L_716844_SNP [dm6]	A	T	4.433e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	10630936	2L_10630936_SNP [dm3] 2L_10630936_SNP [dm6]	C	A	4.439e^-4	1	SYNONYMOUS_CODING CG7329
3R	20488366	3R_20488366_SNP [dm3] 3R_24662644_SNP [dm6]	T	A	4.440e^-4	1	UPSTREAM Ppox INTRON slo	regulatory region REDfly_CRMs
3L	9652054	3L_9652054_SNP [dm3] 3L_9658954_SNP [dm6]	A	G	4.446e^-4	1	UTR_3_PRIME CG33696 INTRON fry	TF binding site mE1_TFBS_inv
X	4374425	X_4374425_SNP [dm3] X_4480392_SNP [dm6]	G	A	4.447e^-4	1	INTRON CR32773 & 1 other
2L	6949034	2L_6949034_SNP [dm3] 2L_6949034_SNP [dm6]	G	A	4.460e^-4	1	UPSTREAM ihog DOWNSTREAM Gas41 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1838140	3L_1838140_SNP [dm3] 3L_1838140_SNP [dm6]	G	A	4.461e^-4	1	INTERGENIC
2R	1253844	2R_1253844_INS [dm3] 2R_5366339_INS [dm6]	A	AATATTTCACAAGAATAATA...	4.466e^-4	1	INTRON CR42646
2L	17221241	2L_17221241_SNP [dm3] 2L_17221241_SNP [dm6]	A	T	4.467e^-4	1	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19442289	2R_19442289_SNP [dm3] 2R_23554766_SNP [dm6]	G	T	4.475e^-4	1	UPSTREAM pita DOWNSTREAM Rrp4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	1291744	X_1291744_SNP [dm3] X_1397711_SNP [dm6]	C	T	4.476e^-4	1	DOWNSTREAM CG11448 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	17923756	2R_17923756_SNP [dm3] 2R_22036251_SNP [dm6]	G	A	4.477e^-4	1	DOWNSTREAM CG9308 INTRON CG34370
3R	3518504	3R_3518504_SNP [dm3] 3R_7692782_SNP [dm6]	A	G	4.477e^-4	1	SYNONYMOUS_CODING Nlg1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13884144	3L_13884144_SNP [dm3] 3L_13891044_SNP [dm6]	A	C	4.478e^-4	1	INTRON dysc
2R	13464578	2R_13464578_SNP [dm3] 2R_17577073_SNP [dm6]	T	C	4.487e^-4	1	NON_SYNONYMOUS_CODING Dcr-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19446579	X_19446579_INS [dm3] X_19552546_INS [dm6]	C	CG	4.487e^-4	1	DOWNSTREAM mir-973 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5321431	2L_5321431_SNP [dm3] 2L_5321431_SNP [dm6]	T	C	4.516e^-4	1	SYNONYMOUS_CODING Ncoa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6295655	2L_6295655_SNP [dm3] 2L_6295655_SNP [dm6]	C	T	4.528e^-4	1	INTRON Ddr
2R	19136254	2R_19136254_SNP [dm3] 2R_23248731_SNP [dm6]	T	C	4.534e^-4	1	UPSTREAM RpL22-like INTERGENIC
3R	27208703	3R_27208703_SNP [dm3] 3R_31382981_SNP [dm6]	T	A	4.539e^-4	1	INTRON CG1607
X	5865315	X_5865315_SNP [dm3] X_5971282_SNP [dm6]	G	C	4.549e^-4	1	INTRON Grip
X	693617	X_693617_SNP [dm3] X_799584_SNP [dm6]	G	A	4.553e^-4	1	SYNONYMOUS_CODING Rbf	TF binding site mE1_TFBS_sens
X	5589224	X_5589224_SNP [dm3] X_5695191_SNP [dm6]	A	G	4.557e^-4	1	UTR_5_PRIME CG3149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	5408214	X_5408214_SNP [dm3] X_5514181_SNP [dm6]	G	A	4.561e^-4	1	INTERGENIC
3R	17256140	3R_17256140_SNP [dm3] 3R_21430418_SNP [dm6]	T	C	4.570e^-4	1	INTRON lbl	TF binding site mE1_TFBS_inv
2R	13383307	2R_13383307_SNP [dm3] 2R_17495802_SNP [dm6]	C	T	4.571e^-4	1	SYNONYMOUS_CODING CG30103	TF binding site mE1_TFBS_cad
2R	14888182	2R_14888182_SNP [dm3] 2R_19000677_SNP [dm6]	A	T	4.572e^-4	1	INTRON tn
3L	3298252	3L_3298252_SNP [dm3] 3L_3298252_SNP [dm6]	C	A	4.577e^-4	1	SYNONYMOUS_CODING CG12009 UPSTREAM mir-955
2L	13914442	2L_13914442_SNP [dm3] 2L_13914442_SNP [dm6]	T	G	4.582e^-4	1	UPSTREAM Ance-3 INTERGENIC
3L	18147582	3L_18147582_MNP [dm3] 3L_18154482_MNP [dm6]	TTC	CCG	4.583e^-4	1	DOWNSTREAM CG7330 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	2709528	X_2709528_SNP [dm3] X_2815495_SNP [dm6]	A	C	4.589e^-4	1	INTRON kirre
2R	6673175	2R_6673175_SNP [dm3] 2R_10785670_SNP [dm6]	G	T	4.604e^-4	1	DOWNSTREAM CR44300 & 2 others INTRON CG33144
X	3711623	X_3711623_SNP [dm3] X_3817590_SNP [dm6]	T	C	4.605e^-4	1	INTRON ec
2R	9529749	2R_9529749_INS [dm3] 2R_13642244_INS [dm6]	A	AA	4.616e^-4	1	INTRON fas
2L	10020782	2L_10020782_SNP [dm3] 2L_10020782_SNP [dm6]	C	G	4.617e^-4	1	INTERGENIC
3L	9647273	3L_9647273_SNP [dm3] 3L_9654173_SNP [dm6]	T	G	4.618e^-4	1	INTRON fry & 1 other
2R	19442276	2R_19442276_SNP [dm3] 2R_23554753_SNP [dm6]	C	T	4.620e^-4	1	UPSTREAM pita DOWNSTREAM Rrp4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	16433321	2L_16433321_SNP [dm3] 2L_16433321_SNP [dm6]	T	A	4.628e^-4	1	INTRON CG5888
2R	9108182	2R_9108182_SNP [dm3] 2R_13220677_SNP [dm6]	A	C	4.631e^-4	1	UPSTREAM CG4646 DOWNSTREAM Fsn INTRON CG17059	TF binding site BDTNP1_TFBS_Med mE1_TFBS_Ubx
2L	16386796	2L_16386796_INS [dm3] 2L_16386796_INS [dm6]	T	TGTAT	4.636e^-4	1	INTERGENIC
3L	11341238	3L_11341238_SNP [dm3] 3L_11348138_SNP [dm6]	A	T	4.636e^-4	1	INTERGENIC
3L	11341449	3L_11341449_SNP [dm3] 3L_11348349_SNP [dm6]	T	A	4.636e^-4	1	INTERGENIC
2L	7630452	2L_7630452_SNP [dm3] 2L_7630452_SNP [dm6]	G	T	4.643e^-4	1	INTERGENIC
2R	19366637	2R_19366637_SNP [dm3] 2R_23479114_SNP [dm6]	G	A	4.652e^-4	1	INTRON CG43795
2L	18980949	2L_18980949_SNP [dm3] 2L_18980949_SNP [dm6]	A	G	4.656e^-4	1	INTRON Swip-1	TF binding site mE1_TFBS_hkb
3L	9882357	3L_9882357_SNP [dm3] 3L_9889257_SNP [dm6]	G	A	4.662e^-4	1	UTR_5_PRIME CalpB UPSTREAM Taf2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8502806	2L_8502806_SNP [dm3] 2L_8502806_SNP [dm6]	G	C	4.665e^-4	1	INTRON Dh31
3R	15447066	3R_15447066_SNP [dm3] 3R_19621344_SNP [dm6]	A	T	4.678e^-4	1	UPSTREAM CG6231 INTRON CG6231
2R	9583263	2R_9583263_SNP [dm3] 2R_13695758_SNP [dm6]	G	A	4.678e^-4	1	INTRON fas
2L	6698623	2L_6698623_SNP [dm3] 2L_6698623_SNP [dm6]	T	A	4.686e^-4	1	INTRON Tsp
2R	4182401	2R_4182401_SNP [dm3] 2R_8294896_SNP [dm6]	T	A	4.695e^-4	1	INTERGENIC
2L	7432840	2L_7432840_SNP [dm3] 2L_7432840_SNP [dm6]	A	G	4.698e^-4	1	INTRON CG5958
2L	16213153	2L_16213153_SNP [dm3] 2L_16213153_SNP [dm6]	G	A	4.701e^-4	1	SYNONYMOUS_CODING CG31819	TF binding site BDTNP1_TFBS_twi
3L	1417481	3L_1417481_SNP [dm3] 3L_1417481_SNP [dm6]	A	C	4.717e^-4	1	NON_SYNONYMOUS_CODING FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	15824248	2R_15824248_SNP [dm3] 2R_19936743_SNP [dm6]	G	A	4.733e^-4	1	INTERGENIC
3R	10993551	3R_10993551_SNP [dm3] 3R_15167829_SNP [dm6]	A	T	4.737e^-4	1	INTRON Gyc88E
2L	14887867	2L_14887867_SNP [dm3] 2L_14887867_SNP [dm6]	G	A	4.737e^-4	1	INTERGENIC
3R	26020031	3R_26020031_DEL [dm3] 3R_30194309_DEL [dm6]	AAG	A	4.750e^-4	1	DOWNSTREAM CG15531 INTERGENIC
2L	9447190	2L_9447190_DEL [dm3] 2L_9447190_DEL [dm6]	AA	A	4.759e^-4	1	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2R	15144519	2R_15144519_SNP [dm3] 2R_19257014_SNP [dm6]	A	C	4.763e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
X	5589230	X_5589230_SNP [dm3] X_5695197_SNP [dm6]	T	C	4.770e^-4	1	UTR_5_PRIME CG3149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	16700777	2R_16700777_SNP [dm3] 2R_20813272_SNP [dm6]	G	A	4.771e^-4	1	INTERGENIC
2R	19706427	2R_19706427_SNP [dm3] 2R_23818904_SNP [dm6]	T	A	4.782e^-4	1	UPSTREAM CG4797 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	11477810	3L_11477810_SNP [dm3] 3L_11484710_SNP [dm6]	G	C	4.783e^-4	1	INTERGENIC
2L	16406104	2L_16406104_SNP [dm3] 2L_16406104_SNP [dm6]	C	T	4.787e^-4	1	UPSTREAM CG5888 INTRON CG5888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17802354	3L_17802354_INS [dm3] 3L_17809254_INS [dm6]	T	TAT	4.803e^-4	1	UTR_3_PRIME cln3 UPSTREAM CG32191
3R	17402494	3R_17402494_SNP [dm3] 3R_21576772_SNP [dm6]	T	A	4.804e^-4	1	SYNONYMOUS_CODING InR
2L	8748414	2L_8748414_SNP [dm3] 2L_8748414_SNP [dm6]	C	T	4.821e^-4	1	INTERGENIC
2L	13537420	2L_13537420_SNP [dm3] 2L_13537420_SNP [dm6]	G	A	4.842e^-4	1	INTRON B4
3R	21487172	3R_21487172_SNP [dm3] 3R_25661450_SNP [dm6]	G	A	4.842e^-4	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9253242	3L_9253242_SNP [dm3] 3L_9260142_SNP [dm6]	C	T	4.843e^-4	1	INTRON GluRIB
3R	26663682	3R_26663682_SNP [dm3] 3R_30837960_SNP [dm6]	C	A	4.854e^-4	1	INTRON CG15544
2L	8271055	2L_8271055_SNP [dm3] 2L_8271055_SNP [dm6]	T	G	4.868e^-4	1	INTRON Btk29A
3L	8608472	3L_8608472_SNP [dm3] 3L_8615372_SNP [dm6]	A	G	4.874e^-4	1	SYNONYMOUS_CODING CG6282
3R	21487400	3R_21487400_SNP [dm3] 3R_25661678_SNP [dm6]	A	T	4.875e^-4	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7942633	2L_7942633_SNP [dm3] 2L_7942633_SNP [dm6]	T	C	4.875e^-4	1	INTRON Snoo
2L	7086501	2L_7086501_SNP [dm3] 2L_7086501_SNP [dm6]	C	T	4.877e^-4	1	INTERGENIC
3R	1666152	3R_1666152_SNP [dm3] 3R_5840430_SNP [dm6]	C	A	4.879e^-4	1	UPSTREAM CG1213 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19059869	2R_19059869_SNP [dm3] 2R_23172346_SNP [dm6]	G	A	4.880e^-4	1	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4044504	X_4044504_SNP [dm3] X_4150471_SNP [dm6]	C	G	4.901e^-4	1	INTRON Fas2
3L	8910604	3L_8910604_SNP [dm3] 3L_8917504_SNP [dm6]	T	A	4.911e^-4	1	INTRON Tsp66E
2R	18393254	2R_18393254_SNP [dm3] 2R_22505749_SNP [dm6]	G	A	4.919e^-4	1	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2342609	3L_2342609_SNP [dm3] 3L_2342609_SNP [dm6]	A	T	4.923e^-4	1	INTRON MsR1
3L	2342612	3L_2342612_INS [dm3] 3L_2342612_INS [dm6]	A	AG	4.923e^-4	1	INTRON MsR1
3L	2342616	3L_2342616_SNP [dm3] 3L_2342616_SNP [dm6]	G	A	4.923e^-4	1	INTRON MsR1
3L	2342617	3L_2342617_SNP [dm3] 3L_2342617_SNP [dm6]	G	C	4.923e^-4	1	INTRON MsR1
2L	7630459	2L_7630459_SNP [dm3] 2L_7630459_SNP [dm6]	T	G	4.925e^-4	1	INTERGENIC
2L	11213798	2L_11213798_SNP [dm3] 2L_11213798_SNP [dm6]	C	T	4.928e^-4	1	INTRON ab
3L	7484439	3L_7484439_SNP [dm3] 3L_7491339_SNP [dm6]	G	T	4.937e^-4	1	UPSTREAM Cyp316a1 INTERGENIC
2L	16135147	2L_16135147_SNP [dm3] 2L_16135147_SNP [dm6]	G	A	4.942e^-4	1	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2L	7432732	2L_7432732_SNP [dm3] 2L_7432732_SNP [dm6]	T	C	4.943e^-4	1	INTRON CG5958
3L	16815253	3L_16815253_SNP [dm3] 3L_16822153_SNP [dm6]	G	T	4.954e^-4	1	INTRON CG13024
X	4781169	X_4781169_SNP [dm3] X_4887136_SNP [dm6]	A	G	4.961e^-4	1	INTRON CG42594
3L	4990719	3L_4990719_SNP [dm3] 3L_4990719_SNP [dm6]	G	C	4.979e^-4	1	INTRON Con
3L	6093438	3L_6093438_SNP [dm3] 3L_6100338_SNP [dm6]	T	C	4.985e^-4	1	INTRON Ets65A
X	13164764	X_13164764_INS [dm3] X_13270731_INS [dm6]	A	ATA	4.986e^-4	1	INTRON HDAC4
3L	11448689	3L_11448689_SNP [dm3] 3L_11455589_SNP [dm6]	A	G	4.988e^-4	1	INTERGENIC
2R	4460569	2R_4460569_SNP [dm3] 2R_8573064_SNP [dm6]	C	T	4.990e^-4	1	DOWNSTREAM Cyp6a13 & 1 other INTERGENIC
2L	6699334	2L_6699334_INS [dm3] 2L_6699334_INS [dm6]	T	TTGCTATTGCTTT...	4.990e^-4	1	INTRON Tsp	TF binding site mE1_TFBS_cad
X	21474894	X_21474894_DEL [dm3] X_21603867_DEL [dm6]	GATGATACT	G	5.023e^-4	1	INTRON CG14476
X	16786001	X_16786001_DEL [dm3] X_16891968_DEL [dm6]	ATATATGTAGG...	A	5.036e^-4	1	INTERGENIC
X	8260308	X_8260308_INS [dm3] X_8366275_INS [dm6]	T	TT	5.072e^-4	1	INTRON nAChRalpha3
3R	26757562	3R_26757562_SNP [dm3] 3R_30931840_SNP [dm6]	A	G	5.081e^-4	1	INTERGENIC
3L	14566147	3L_14566147_SNP [dm3] 3L_14573047_SNP [dm6]	A	G	5.081e^-4	1	INTERGENIC
3L	14383330	3L_14383330_SNP [dm3] 3L_14390230_SNP [dm6]	A	T	5.082e^-4	1	INTERGENIC
3L	8879966	3L_8879966_SNP [dm3] 3L_8886866_SNP [dm6]	A	G	5.089e^-4	1	SYNONYMOUS_CODING dally
2L	6949174	2L_6949174_SNP [dm3] 2L_6949174_SNP [dm6]	A	T	5.100e^-4	1	UPSTREAM ihog DOWNSTREAM Gas41 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10628637	3L_10628637_SNP [dm3] 3L_10635537_SNP [dm6]	A	G	5.103e^-4	1	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001
2L	8004202	2L_8004202_SNP [dm3] 2L_8004202_SNP [dm6]	A	C	5.119e^-4	1	START_GAINED Wwox UTR_5_PRIME Wwox DOWNSTREAM Spn28Dc
2L	6952103	2L_6952103_SNP [dm3] 2L_6952103_SNP [dm6]	C	T	5.135e^-4	1	INTRON SA
3R	21487093	3R_21487093_SNP [dm3] 3R_25661371_SNP [dm6]	G	A	5.138e^-4	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9166267	2R_9166267_SNP [dm3] 2R_13278762_SNP [dm6]	A	C	5.139e^-4	1	INTRON Dh31-R
2L	3266114	2L_3266114_SNP [dm3] 2L_3266114_SNP [dm6]	T	C	5.142e^-4	1	UPSTREAM CR45706 INTERGENIC
2R	10776520	2R_10776520_SNP [dm3] 2R_14889015_SNP [dm6]	C	G	5.143e^-4	1	UPSTREAM Cyp6a8 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	14078028	X_14078028_SNP [dm3] X_14183995_SNP [dm6]	C	A	5.149e^-4	1	UPSTREAM CG32603 DOWNSTREAM CG11584 INTERGENIC
2L	8266224	2L_8266224_SNP [dm3] 2L_8266224_SNP [dm6]	A	G	5.160e^-4	1	UPSTREAM Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad
3L	2747100	3L_2747100_SNP [dm3] 3L_2747100_SNP [dm6]	G	T	5.167e^-4	1	INTRON Mrtf
2R	17411421	2R_17411421_SNP [dm3] 2R_21523916_SNP [dm6]	A	T	5.173e^-4	1	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18055777	2R_18055777_SNP [dm3] 2R_22168272_SNP [dm6]	T	C	5.178e^-4	1	INTRON a
2R	12660264	2R_12660264_SNP [dm3] 2R_16772759_SNP [dm6]	C	A	5.178e^-4	1	UPSTREAM unc-104 DOWNSTREAM Sod2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	11361055	3L_11361055_SNP [dm3] 3L_11367955_SNP [dm6]	G	T	5.181e^-4	1	INTERGENIC
X	4778674	X_4778674_SNP [dm3] X_4884641_SNP [dm6]	A	T	5.191e^-4	1	INTRON CG42594
2L	19408785	2L_19408785_SNP [dm3] 2L_19408785_SNP [dm6]	G	A	5.194e^-4	1	INTRON Pax	transposable element FlyBase
3L	6061491	3L_6061491_SNP [dm3] 3L_6068391_SNP [dm6]	A	G	5.204e^-4	1	INTRON CG42269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20462426	3R_20462426_SNP [dm3] 3R_24636704_SNP [dm6]	A	G	5.206e^-4	1	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3210958	X_3210958_SNP [dm3] X_3316925_SNP [dm6]	G	A	5.219e^-4	1	UPSTREAM CG10793 INTRON dnc & 1 other
3L	13306135	3L_13306135_SNP [dm3] 3L_13313035_SNP [dm6]	G	A	5.222e^-4	1	INTERGENIC
3L	13306138	3L_13306138_SNP [dm3] 3L_13313038_SNP [dm6]	C	G	5.222e^-4	1	INTERGENIC
2L	10295068	2L_10295068_SNP [dm3] 2L_10295068_SNP [dm6]	T	A	5.227e^-4	1	DOWNSTREAM CYLD INTRON Hand	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	992140	3L_992140_SNP [dm3] 3L_992140_SNP [dm6]	C	T	5.228e^-4	1	UTR_3_PRIME Glut1 DOWNSTREAM Glut1
2L	9011371	2L_9011371_SNP [dm3] 2L_9011371_SNP [dm6]	A	C	5.230e^-4	1	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2L	665778	2L_665778_SNP [dm3] 2L_665778_SNP [dm6]	C	G	5.230e^-4	1	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	15454552	2L_15454552_SNP [dm3] 2L_15454552_SNP [dm6]	A	G	5.238e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16914722	2R_16914722_SNP [dm3] 2R_21027217_SNP [dm6]	G	A	5.254e^-4	1	INTERGENIC
3L	9540113	3L_9540113_SNP [dm3] 3L_9547013_SNP [dm6]	C	T	5.264e^-4	1	UPSTREAM CG42673 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12323363	2L_12323363_SNP [dm3] 2L_12323363_SNP [dm6]	G	T	5.270e^-4	1	INTERGENIC
3L	760790	3L_760790_SNP [dm3] 3L_760790_SNP [dm6]	G	C	5.271e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	14710885	3L_14710885_DEL [dm3] 3L_14717785_DEL [dm6]	GAAAAA	T	5.275e^-4	1	INTRON ome
3L	4518894	3L_4518894_SNP [dm3] 3L_4518894_SNP [dm6]	A	T	5.277e^-4	1	INTRON Tie
2R	17756317	2R_17756317_SNP [dm3] 2R_21868812_SNP [dm6]	G	A	5.286e^-4	1	INTERGENIC
3R	17402562	3R_17402562_SNP [dm3] 3R_21576840_SNP [dm6]	A	G	5.295e^-4	1	SYNONYMOUS_CODING InR
X	17614412	X_17614412_SNP [dm3] X_17720379_SNP [dm6]	T	C	5.308e^-4	1	INTRON CG42684	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2L	512280	2L_512280_SNP [dm3] 2L_512280_SNP [dm6]	G	T	5.313e^-4	1	INTRON ush	regulatory region REDfly_CRMs
3L	6057926	3L_6057926_SNP [dm3] 3L_6064826_SNP [dm6]	T	C	5.319e^-4	1	INTERGENIC
3L	6059837	3L_6059837_SNP [dm3] 3L_6066737_SNP [dm6]	G	A	5.319e^-4	1	SYNONYMOUS_CODING CG42269	TF binding site mE1_TFBS_chinmo
3R	18594827	3R_18594827_SNP [dm3] 3R_22769105_SNP [dm6]	G	T	5.335e^-4	1	SYNONYMOUS_CODING CG43092 UPSTREAM CG43091 DOWNSTREAM CG43093 INTRON Usp12-46 & 1 other
2R	12059029	2R_12059029_SNP [dm3] 2R_16171524_SNP [dm6]	T	G	5.344e^-4	1	SYNONYMOUS_CODING Ptp52F UPSTREAM CG8435	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	13483175	2R_13483175_SNP [dm3] 2R_17595670_SNP [dm6]	G	A	5.352e^-4	1	SYNONYMOUS_CODING CG11423 INTRON lack
2R	13483176	2R_13483176_SNP [dm3] 2R_17595671_SNP [dm6]	A	C	5.352e^-4	1	NON_SYNONYMOUS_CODING CG11423 INTRON lack
3L	12304645	3L_12304645_SNP [dm3] 3L_12311545_SNP [dm6]	C	T	5.374e^-4	1	UTR_3_PRIME CG44355
3L	9534512	3L_9534512_SNP [dm3] 3L_9541412_SNP [dm6]	A	G	5.381e^-4	1	DOWNSTREAM Ir67a INTERGENIC
3L	9534513	3L_9534513_SNP [dm3] 3L_9541413_SNP [dm6]	T	C	5.381e^-4	1	DOWNSTREAM Ir67a INTERGENIC
2R	19271270	2R_19271270_SNP [dm3] 2R_23383747_SNP [dm6]	G	T	5.383e^-4	1	UPSTREAM CG13551 DOWNSTREAM CG30414 EXON CR44784	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
3L	17143780	3L_17143780_SNP [dm3] 3L_17150680_SNP [dm6]	T	A	5.385e^-4	1	INTRON Rbp6	TF binding site mE1_TFBS_HSA
3L	5316693	3L_5316693_SNP [dm3] 3L_5323593_SNP [dm6]	T	A	5.387e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15447186	3R_15447186_SNP [dm3] 3R_19621464_SNP [dm6]	A	T	5.410e^-4	1	UPSTREAM CG6231 INTRON CG6231
2L	6245013	2L_6245013_SNP [dm3] 2L_6245013_SNP [dm6]	C	A	5.423e^-4	1	INTERGENIC
2L	1340809	2L_1340809_SNP [dm3] 2L_1340809_SNP [dm6]	G	A	5.431e^-4	1	DOWNSTREAM CG33923 INTERGENIC
3L	18353429	3L_18353429_SNP [dm3] 3L_18360329_SNP [dm6]	A	G	5.441e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_cad
2L	17605823	2L_17605823_SNP [dm3] 2L_17605823_SNP [dm6]	C	A	5.472e^-4	1	DOWNSTREAM CR44412 INTERGENIC
3R	7847590	3R_7847590_DEL [dm3] 3R_12021868_DEL [dm6]	AA	A	5.473e^-4	1	INTERGENIC
2L	6393808	2L_6393808_SNP [dm3] 2L_6393808_SNP [dm6]	C	T	5.477e^-4	1	INTRON CG42368
3L	7537972	3L_7537972_DEL [dm3] 3L_7544872_DEL [dm6]	AA	A	5.478e^-4	1	INTERGENIC
2L	3452604	2L_3452604_SNP [dm3] 2L_3452604_SNP [dm6]	G	A	5.494e^-4	1	UTR_5_PRIME CG12795 DOWNSTREAM Snx1	TF binding site mE1_TFBS_cad
3L	7538015	3L_7538015_SNP [dm3] 3L_7544915_SNP [dm6]	C	A	5.498e^-4	1	INTERGENIC
2L	795526	2L_795526_SNP [dm3] 2L_795526_SNP [dm6]	C	T	5.501e^-4	1	INTERGENIC
3R	21487202	3R_21487202_SNP [dm3] 3R_25661480_SNP [dm6]	A	G	5.502e^-4	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17267940	3L_17267940_SNP [dm3] 3L_17274840_SNP [dm6]	T	A	5.507e^-4	1	DOWNSTREAM CR45436 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26020078	3R_26020078_SNP [dm3] 3R_30194356_SNP [dm6]	C	T	5.514e^-4	1	DOWNSTREAM CG15531 INTERGENIC
2L	15458192	2L_15458192_SNP [dm3] 2L_15458192_SNP [dm6]	C	T	5.514e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15458391	2L_15458391_DEL [dm3] 2L_15458391_DEL [dm6]	TTCACCCGCATT...	T	5.514e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	8742012	3L_8742012_DEL [dm3] 3L_8748912_DEL [dm6]	TG	T	5.523e^-4	1	DOWNSTREAM CG13306 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	4784698	3L_4784698_SNP [dm3] 3L_4784698_SNP [dm6]	T	C	5.526e^-4	1	INTRON RhoGEF64C
2R	18311990	2R_18311990_SNP [dm3] 2R_22424485_SNP [dm6]	C	T	5.546e^-4	1	INTRON rad50	TF binding site mE1_TFBS_cad
2R	16307596	2R_16307596_SNP [dm3] 2R_20420091_SNP [dm6]	G	T	5.551e^-4	1	INTERGENIC
X	8387745	X_8387745_SNP [dm3] X_8493712_SNP [dm6]	T	G	5.558e^-4	1	INTRON CG33181
3R	11337060	3R_11337060_SNP [dm3] 3R_15511338_SNP [dm6]	C	T	5.565e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	8267821	2L_8267821_SNP [dm3] 2L_8267821_SNP [dm6]	T	G	5.565e^-4	1	INTRON Btk29A	TF binding site mE1_TFBS_D
X	21507620	X_21507620_SNP [dm3] X_21636593_SNP [dm6]	G	A	5.571e^-4	1	INTERGENIC	transposable element FlyBase
X	8926306	X_8926306_INS [dm3] X_9032273_INS [dm6]	A	AT	5.572e^-4	1	INTRON CR43836 & 1 other
3R	18767824	3R_18767824_SNP [dm3] 3R_22942102_SNP [dm6]	A	G	5.574e^-4	1	INTRON klg	TF binding site mE1_TFBS_chinmo
2L	12209688	2L_12209688_SNP [dm3] 2L_12209688_SNP [dm6]	C	T	5.582e^-4	1	SYNONYMOUS_CODING CG31759 INTRON aret
3R	15193189	3R_15193189_SNP [dm3] 3R_19367467_SNP [dm6]	G	A	5.583e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	9628703	3L_9628703_SNP [dm3] 3L_9635603_SNP [dm6]	C	T	5.587e^-4	1	INTRON fry
3L	16345594	3L_16345594_SNP [dm3] 3L_16352494_SNP [dm6]	C	T	5.597e^-4	1	NON_SYNONYMOUS_CODING CG4933 UPSTREAM CG4925 DOWNSTREAM Pdh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11777983	2L_11777983_SNP [dm3] 2L_11777983_SNP [dm6]	A	G	5.601e^-4	1	INTERGENIC
3L	1138666	3L_1138666_SNP [dm3] 3L_1138666_SNP [dm6]	C	G	5.613e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14080313	X_14080313_SNP [dm3] X_14186280_SNP [dm6]	T	C	5.621e^-4	1	UPSTREAM CG12481 DOWNSTREAM CG32603 INTERGENIC	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
2R	15811001	2R_15811001_SNP [dm3] 2R_19923496_SNP [dm6]	C	T	5.625e^-4	1	INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3L	2174240	3L_2174240_SNP [dm3] 3L_2174240_SNP [dm6]	G	A	5.630e^-4	1	UTR_5_PRIME CG15820
3R	8527748	3R_8527748_SNP [dm3] 3R_12702026_SNP [dm6]	T	C	5.631e^-4	1	INTRON Past1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13376520	3R_13376520_SNP [dm3] 3R_17550798_SNP [dm6]	C	T	5.633e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2174184	3L_2174184_SNP [dm3] 3L_2174184_SNP [dm6]	C	T	5.637e^-4	1	UTR_5_PRIME CG15820
X	3710490	X_3710490_SNP [dm3] X_3816457_SNP [dm6]	T	C	5.645e^-4	1	INTRON ec	TF binding site mE1_TFBS_HSA
2R	12169347	2R_12169347_SNP [dm3] 2R_16281842_SNP [dm6]	C	T	5.651e^-4	1	SYNONYMOUS_CODING CG7755 DOWNSTREAM CG15705	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6110994	X_6110994_SNP [dm3] X_6216961_SNP [dm6]	G	T	5.654e^-4	1	DOWNSTREAM Btd INTERGENIC
3R	19560928	3R_19560928_SNP [dm3] 3R_23735206_SNP [dm6]	G	T	5.657e^-4	1	INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17810896	3L_17810896_SNP [dm3] 3L_17817796_SNP [dm6]	C	T	5.679e^-4	1	DOWNSTREAM Ir75b INTRON Ir75a
X	20943862	X_20943862_SNP [dm3] X_21072835_SNP [dm6]	T	G	5.685e^-4	1	INTRON bves
3L	18356140	3L_18356140_SNP [dm3] 3L_18363040_SNP [dm6]	T	C	5.691e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
X	14073579	X_14073579_SNP [dm3] X_14179546_SNP [dm6]	A	C	5.693e^-4	1	INTERGENIC
2L	16135128	2L_16135128_SNP [dm3] 2L_16135128_SNP [dm6]	T	A	5.697e^-4	1	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2L	16135137	2L_16135137_SNP [dm3] 2L_16135137_SNP [dm6]	A	T	5.697e^-4	1	DOWNSTREAM CR44871 & 1 other INTRON CG34168
X	4780531	X_4780531_DEL [dm3] X_4886498_DEL [dm6]	CT	C	5.705e^-4	1	INTRON CG42594
X	19120358	X_19120358_SNP [dm3] X_19226325_SNP [dm6]	A	G	5.723e^-4	1	INTRON CG7884	TF binding site BDTNP1_TFBS_twi
X	17270853	X_17270853_SNP [dm3] X_17376820_SNP [dm6]	A	T	5.724e^-4	1	INTERGENIC
3R	7410489	3R_7410489_SNP [dm3] 3R_11584767_SNP [dm6]	T	A	5.726e^-4	1	UTR_3_PRIME wkd DOWNSTREAM CG6791	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16650740	2L_16650740_SNP [dm3] 2L_16650740_SNP [dm6]	G	T	5.730e^-4	1	INTRON CG42389
2L	9888384	2L_9888384_INS [dm3] 2L_9888384_INS [dm6]	T	TCCT	5.739e^-4	1	DOWNSTREAM CR44701 INTRON FKBP59	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	2174173	3L_2174173_SNP [dm3] 3L_2174173_SNP [dm6]	G	T	5.752e^-4	1	UTR_5_PRIME CG15820
2R	18489963	2R_18489963_SNP [dm3] 2R_22602458_SNP [dm6]	C	G	5.752e^-4	1	NON_SYNONYMOUS_CODING CG4294
2L	5569744	2L_5569744_SNP [dm3] 2L_5569744_SNP [dm6]	C	A	5.755e^-4	1	INTERGENIC
3L	8608315	3L_8608315_SNP [dm3] 3L_8615215_SNP [dm6]	C	T	5.762e^-4	1	INTRON CG6282
X	8672153	X_8672153_SNP [dm3] X_8778120_SNP [dm6]	G	A	5.767e^-4	1	INTRON Lim1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	21140169	3R_21140169_SNP [dm3] 3R_25314447_SNP [dm6]	T	C	5.773e^-4	1	UPSTREAM CG31087 DOWNSTREAM CG10559 INTERGENIC
2L	17021332	2L_17021332_SNP [dm3] 2L_17021332_SNP [dm6]	C	A	5.780e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
X	20990098	X_20990098_SNP [dm3] X_21119071_SNP [dm6]	C	T	5.781e^-4	1	SYNONYMOUS_CODING CG15445 DOWNSTREAM CR44374	TF binding site mE1_TFBS_cad
2L	5443302	2L_5443302_SNP [dm3] 2L_5443302_SNP [dm6]	C	T	5.783e^-4	1	INTERGENIC
2L	6590357	2L_6590357_INS [dm3] 2L_6590357_INS [dm6]	A	ATATCATAA	5.786e^-4	1	INTRON CG11319
3R	23390248	3R_23390248_SNP [dm3] 3R_27564526_SNP [dm6]	T	A	5.787e^-4	1	UTR_3_PRIME wdb DOWNSTREAM wdb
3L	4528910	3L_4528910_SNP [dm3] 3L_4528910_SNP [dm6]	A	G	5.795e^-4	1	INTRON Tie
X	5578520	X_5578520_SNP [dm3] X_5684487_SNP [dm6]	G	C	5.801e^-4	1	DOWNSTREAM CG3160 & 1 other INTERGENIC
3L	10570989	3L_10570989_SNP [dm3] 3L_10577889_SNP [dm6]	T	C	5.801e^-4	1	INTRON A2bp1
3L	14383246	3L_14383246_SNP [dm3] 3L_14390146_SNP [dm6]	G	A	5.803e^-4	1	INTERGENIC
2R	9657476	2R_9657476_SNP [dm3] 2R_13769971_SNP [dm6]	A	T	5.804e^-4	1	SPLICE_SITE_REGION Cpr50Ca UTR_5_PRIME Cpr50Ca
3L	9646527	3L_9646527_SNP [dm3] 3L_9653427_SNP [dm6]	G	A	5.818e^-4	1	INTRON fry & 1 other
3R	7553178	3R_7553178_SNP [dm3] 3R_11727456_SNP [dm6]	G	A	5.830e^-4	1	SYNONYMOUS_CODING CG12594	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5919282	2L_5919282_SNP [dm3] 2L_5919282_SNP [dm6]	T	C	5.835e^-4	1	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad
3L	9534523	3L_9534523_SNP [dm3] 3L_9541423_SNP [dm6]	C	T	5.842e^-4	1	DOWNSTREAM Ir67a INTERGENIC
3R	9998069	3R_9998069_SNP [dm3] 3R_14172347_SNP [dm6]	T	G	5.843e^-4	1	UTR_3_PRIME Dop1R1
2R	20563653	2R_20563653_SNP [dm3] 2R_24676130_SNP [dm6]	G	T	5.854e^-4	1	SPLICE_SITE_REGION Mmp1 INTRON Mmp1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18528747	3R_18528747_SNP [dm3] 3R_22703025_SNP [dm6]	C	A	5.860e^-4	1	NON_SYNONYMOUS_CODING CG6972 UPSTREAM CCAP	TF binding site mE1_TFBS_inv
2L	13724233	2L_13724233_SNP [dm3] 2L_13724233_SNP [dm6]	A	G	5.861e^-4	1	UPSTREAM CG9014 INTERGENIC
3L	7535848	3L_7535848_SNP [dm3] 3L_7542748_SNP [dm6]	A	G	5.879e^-4	1	UPSTREAM CG32376 INTERGENIC
2R	11980202	2R_11980202_SNP [dm3] 2R_16092697_SNP [dm6]	C	G	5.892e^-4	1	INTRON Dg
2L	5912517	2L_5912517_SNP [dm3] 2L_5912517_SNP [dm6]	A	G	5.897e^-4	1	SYNONYMOUS_CODING bchs
X	1983656	X_1983656_SNP [dm3] X_2089623_SNP [dm6]	T	A	5.926e^-4	1	INTRON Unc-76	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8373537	3L_8373537_SNP [dm3] 3L_8380437_SNP [dm6]	C	A	5.931e^-4	1	DOWNSTREAM ImpE1 INTRON ImpE1
3L	18682987	3L_18682987_SNP [dm3] 3L_18689887_SNP [dm6]	T	A	5.935e^-4	1	INTERGENIC
X	10347793	X_10347793_SNP [dm3] X_10453760_SNP [dm6]	T	G	5.943e^-4	1	INTRON CG32683
2R	19113880	2R_19113880_SNP [dm3] 2R_23226357_SNP [dm6]	G	A	5.944e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1391995	3L_1391995_SNP [dm3] 3L_1391995_SNP [dm6]	C	A	5.945e^-4	1	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15454551	2L_15454551_SNP [dm3] 2L_15454551_SNP [dm6]	T	A	5.948e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	3023289	2R_3023289_INS [dm3] 2R_7135784_INS [dm6]	G	GT	5.954e^-4	1	DOWNSTREAM CR44443 INTERGENIC
3L	9647311	3L_9647311_SNP [dm3] 3L_9654211_SNP [dm6]	C	A	5.962e^-4	1	INTRON fry & 1 other
3R	23846538	3R_23846538_DEL [dm3] 3R_28020816_DEL [dm6]	CTCCGC	A	5.971e^-4	1	INTERGENIC
2L	9319990	2L_9319990_SNP [dm3] 2L_9319990_SNP [dm6]	T	C	5.975e^-4	1	INTERGENIC
2R	11919047	2R_11919047_SNP [dm3] 2R_16031542_SNP [dm6]	A	T	5.986e^-4	1	UPSTREAM SP2353 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	14592808	2L_14592808_INS [dm3] 2L_14592808_INS [dm6]	C	CAAC	5.986e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8623402	3R_8623402_SNP [dm3] 3R_12797680_SNP [dm6]	T	A	5.988e^-4	1	INTERGENIC
X	8284674	X_8284674_SNP [dm3] X_8390641_SNP [dm6]	G	T	5.989e^-4	1	INTERGENIC
2L	9318450	2L_9318450_SNP [dm3] 2L_9318450_SNP [dm6]	T	C	5.995e^-4	1	INTERGENIC
2R	19706428	2R_19706428_SNP [dm3] 2R_23818905_SNP [dm6]	G	A	5.999e^-4	1	UPSTREAM CG4797 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	17626287	2L_17626287_SNP [dm3] 2L_17626287_SNP [dm6]	G	A	6.001e^-4	1	START_GAINED CG15147 UTR_5_PRIME CG15147 UPSTREAM CR44413
3R	9377053	3R_9377053_SNP [dm3] 3R_13551331_SNP [dm6]	C	A	6.006e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	18570822	3L_18570822_SNP [dm3] 3L_18577722_SNP [dm6]	G	A	6.010e^-4	1	INTERGENIC
2R	11983647	2R_11983647_SNP [dm3] 2R_16096142_SNP [dm6]	T	C	6.011e^-4	1	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
X	15475758	X_15475758_SNP [dm3] X_15581725_SNP [dm6]	C	T	6.026e^-4	1	SYNONYMOUS_CODING CG9215	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9658119	2R_9658119_SNP [dm3] 2R_13770614_SNP [dm6]	A	G	6.029e^-4	1	INTRON Cpr50Ca	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	4462958	X_4462958_SNP [dm3] X_4568925_SNP [dm6]	A	G	6.030e^-4	1	INTRON CR32773	TF binding site mE1_TFBS_sens
2L	7693045	2L_7693045_SNP [dm3] 2L_7693045_SNP [dm6]	T	C	6.033e^-4	1	UTR_5_PRIME CG43235 UPSTREAM CG7025 DOWNSTREAM Tep2
2L	9944350	2L_9944350_SNP [dm3] 2L_9944350_SNP [dm6]	A	G	6.034e^-4	1	SYNONYMOUS_CODING CG5853
2L	9060582	2L_9060582_SNP [dm3] 2L_9060582_SNP [dm6]	G	A	6.035e^-4	1	INTRON CG31708	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20474087	X_20474087_INS [dm3] X_20603060_INS [dm6]	A	AA	6.038e^-4	1	INTRON RunxA
2R	18734317	2R_18734317_SNP [dm3] 2R_22846794_SNP [dm6]	T	C	6.046e^-4	1	INTRON CG3649	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6462658	2L_6462658_SNP [dm3] 2L_6462658_SNP [dm6]	T	C	6.056e^-4	1	INTRON CG16947	TF binding site mE1_TFBS_HSA

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.084e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1636 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	13846536	2R_13846536_SNP [dm3] 2R_17959031_SNP [dm6]	T	A	8.273e^-8	0.092	INTERGENIC
2R	13846545	2R_13846545_SNP [dm3] 2R_17959040_SNP [dm6]	T	G	9.816e^-8	0.092	INTERGENIC
3L	9542063	3L_9542063_DEL [dm3] 3L_9548963_DEL [dm6]	ACGTCCA	A	6.861e^-7	0.429	INTRON CG42673
3R	4006059	3R_4006059_SNP [dm3] 3R_8180337_SNP [dm6]	T	C	1.130e^-6	0.53	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens
X	5380677	X_5380677_INS [dm3] X_5486644_INS [dm6]	A	AGCCCAGAAACACACACA...	1.517e^-6	0.569	INTRON SPR	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11550652	3L_11550652_SNP [dm3] 3L_11557552_SNP [dm6]	A	G	2.483e^-6	0.776	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	4003989	3R_4003989_SNP [dm3] 3R_8178267_SNP [dm6]	A	T	3.713e^-6	0.832	INTRON grn
2L	1508473	2L_1508473_SNP [dm3] 2L_1508473_SNP [dm6]	C	A	3.951e^-6	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3904918	3L_3904918_SNP [dm3] 3L_3904918_SNP [dm6]	C	T	4.108e^-6	0.832	UTR_3_PRIME Sc2 UPSTREAM ida	TF binding site mE1_TFBS_sens
3L	9538041	3L_9538041_SNP [dm3] 3L_9544941_SNP [dm6]	C	A	4.826e^-6	0.832	UPSTREAM Ir67a INTERGENIC
2R	13846553	2R_13846553_SNP [dm3] 2R_17959048_SNP [dm6]	C	A	4.877e^-6	0.832	INTERGENIC
3L	9540113	3L_9540113_SNP [dm3] 3L_9547013_SNP [dm6]	C	T	8.986e^-6	1	UPSTREAM CG42673 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13846512	2R_13846512_SNP [dm3] 2R_17959007_SNP [dm6]	T	C	1.022e^-5	1	INTERGENIC
2L	8980848	2L_8980848_SNP [dm3] 2L_8980848_SNP [dm6]	A	T	1.092e^-5	1	SPLICE_SITE_REGION CG18662 INTRON CG13101 & 1 other
2R	3144886	2R_3144886_SNP [dm3] 2R_7257381_SNP [dm6]	C	T	1.124e^-5	1	DOWNSTREAM CR45280 INTERGENIC
2R	9652173	2R_9652173_SNP [dm3] 2R_13764668_SNP [dm6]	T	G	1.162e^-5	1	INTERGENIC
3L	2564000	3L_2564000_INS [dm3] 3L_2564000_INS [dm6]	A	AA	1.193e^-5	1	INTRON msn
X	12972493	X_12972493_SNP [dm3] X_13078460_SNP [dm6]	C	T	1.428e^-5	1	UTR_3_PRIME rad DOWNSTREAM hep
3L	8769065	3L_8769065_SNP [dm3] 3L_8775965_SNP [dm6]	G	A	1.492e^-5	1	INTRON Fhos
X	21927583	X_21927583_SNP [dm3] X_22525747_SNP [dm6]	T	G	1.562e^-5	1	INTRON CG17600
2R	15905848	2R_15905848_SNP [dm3] 2R_20018343_SNP [dm6]	T	C	1.573e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7305081	3R_7305081_SNP [dm3] 3R_11479359_SNP [dm6]	G	C	1.657e^-5	1	INTERGENIC
3L	7471244	3L_7471244_SNP [dm3] 3L_7478144_SNP [dm6]	G	A	1.719e^-5	1	INTERGENIC
3R	4004159	3R_4004159_SNP [dm3] 3R_8178437_SNP [dm6]	A	C	1.817e^-5	1	INTRON grn
X	12972471	X_12972471_SNP [dm3] X_13078438_SNP [dm6]	T	G	1.893e^-5	1	UTR_3_PRIME rad DOWNSTREAM hep
X	5589176	X_5589176_SNP [dm3] X_5695143_SNP [dm6]	A	G	1.937e^-5	1	UTR_5_PRIME CG3149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	21927342	X_21927342_SNP [dm3] X_22525506_SNP [dm6]	A	C	2.045e^-5	1	INTRON CG17600
2L	10011609	2L_10011609_SNP [dm3] 2L_10011609_SNP [dm6]	C	T	2.112e^-5	1	SPLICE_SITE_REGION Trp1 SYNONYMOUS_CODING Trp1
3L	487837	3L_487837_SNP [dm3] 3L_487837_SNP [dm6]	G	A	2.380e^-5	1	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6339898	2R_6339898_SNP [dm3] 2R_10452393_SNP [dm6]	G	C	2.456e^-5	1	START_GAINED Cyp49a1 UTR_5_PRIME Cyp49a1 INTRON Galphao & 1 other
2L	7753747	2L_7753747_SNP [dm3] 2L_7753747_SNP [dm6]	T	C	2.530e^-5	1	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
3L	9524084	3L_9524084_SNP [dm3] 3L_9530984_SNP [dm6]	G	A	2.541e^-5	1	SYNONYMOUS_CODING Or67a
3L	17127921	3L_17127921_SNP [dm3] 3L_17134821_SNP [dm6]	G	C	2.554e^-5	1	INTRON Rbp6
3R	9997584	3R_9997584_SNP [dm3] 3R_14171862_SNP [dm6]	A	C	2.960e^-5	1	UTR_3_PRIME Dop1R1
2L	15993680	2L_15993680_SNP [dm3] 2L_15993680_SNP [dm6]	G	A	2.992e^-5	1	INTERGENIC
X	21927348	X_21927348_SNP [dm3] X_22525512_SNP [dm6]	G	T	3.011e^-5	1	INTRON CG17600
3R	7305029	3R_7305029_SNP [dm3] 3R_11479307_SNP [dm6]	G	T	3.131e^-5	1	INTERGENIC
3L	4008835	3L_4008835_SNP [dm3] 3L_4008835_SNP [dm6]	C	T	3.181e^-5	1	INTERGENIC
3L	17998894	3L_17998894_SNP [dm3] 3L_18005794_SNP [dm6]	T	C	3.192e^-5	1	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	4004140	3R_4004140_SNP [dm3] 3R_8178418_SNP [dm6]	T	C	3.193e^-5	1	INTRON grn
X	8373027	X_8373027_SNP [dm3] X_8478994_SNP [dm6]	G	A	3.256e^-5	1	UPSTREAM Cp36 DOWNSTREAM Cp7Fc INTRON CG33223
2R	12261227	2R_12261227_DEL [dm3] 2R_16373722_DEL [dm6]	CAGCTAAC	C	3.266e^-5	1	INTERGENIC
2L	5913517	2L_5913517_SNP [dm3] 2L_5913517_SNP [dm6]	A	G	3.580e^-5	1	INTRON bchs	TF binding site mE1_TFBS_cad
X	5580586	X_5580586_SNP [dm3] X_5686553_SNP [dm6]	C	T	3.628e^-5	1	SYNONYMOUS_CODING CG3160
3L	3894193	3L_3894193_SNP [dm3] 3L_3894193_SNP [dm6]	C	A	3.771e^-5	1	NON_SYNONYMOUS_CODING Fie UPSTREAM snRNA:U11 DOWNSTREAM Gr63a
2R	3095446	2R_3095446_SNP [dm3] 2R_7207941_SNP [dm6]	G	T	3.930e^-5	1	INTRON pk
2R	11792188	2R_11792188_SNP [dm3] 2R_15904683_SNP [dm6]	G	A	4.149e^-5	1	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8814846	X_8814846_SNP [dm3] X_8920813_SNP [dm6]	A	G	4.255e^-5	1	UPSTREAM CR44111 INTRON rdgA
3R	18594627	3R_18594627_SNP [dm3] 3R_22768905_SNP [dm6]	A	T	4.288e^-5	1	UTR_3_PRIME CG43092 UPSTREAM CG43091 DOWNSTREAM CG43093 INTRON Usp12-46 & 1 other
2L	5913525	2L_5913525_SNP [dm3] 2L_5913525_SNP [dm6]	A	T	4.357e^-5	1	INTRON bchs	TF binding site mE1_TFBS_cad
2R	13845428	2R_13845428_SNP [dm3] 2R_17957923_SNP [dm6]	T	G	4.538e^-5	1	INTERGENIC
3L	487793	3L_487793_INS [dm3] 3L_487793_INS [dm6]	T	TGATATTGT	4.624e^-5	1	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16567984	2R_16567984_DEL [dm3] 2R_20680479_DEL [dm6]	TGCATGTT	T	4.736e^-5	1	INTERGENIC
3R	23087562	3R_23087562_SNP [dm3] 3R_27261840_SNP [dm6]	T	C	4.789e^-5	1	SYNONYMOUS_CODING woc EXON CR44049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3143830	2R_3143830_SNP [dm3] 2R_7256325_SNP [dm6]	G	T	4.799e^-5	1	EXON CR45280
2R	4013430	2R_4013430_SNP [dm3] 2R_8125925_SNP [dm6]	C	G	4.830e^-5	1	NON_SYNONYMOUS_CODING coil DOWNSTREAM Nup50	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2R	20134604	2R_20134604_SNP [dm3] 2R_24247081_SNP [dm6]	T	G	4.854e^-5	1	INTRON nord
3L	487841	3L_487841_DEL [dm3] 3L_487841_DEL [dm6]	GGACAAG	G	4.986e^-5	1	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9652017	2R_9652017_SNP [dm3] 2R_13764512_SNP [dm6]	T	A	5.033e^-5	1	INTERGENIC
3R	23845444	3R_23845444_SNP [dm3] 3R_28019722_SNP [dm6]	C	T	5.051e^-5	1	INTERGENIC
3L	14460521	3L_14460521_SNP [dm3] 3L_14467421_SNP [dm6]	G	A	5.054e^-5	1	INTRON bbg
2R	11912850	2R_11912850_SNP [dm3] 2R_16025345_SNP [dm6]	T	C	5.153e^-5	1	DOWNSTREAM CG8399 INTRON casp
2R	3162449	2R_3162449_SNP [dm3] 2R_7274944_SNP [dm6]	T	A	5.160e^-5	1	INTRON Br140	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	487861	3L_487861_SNP [dm3] 3L_487861_SNP [dm6]	C	A	5.165e^-5	1	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18594709	3R_18594709_SNP [dm3] 3R_22768987_SNP [dm6]	A	G	5.249e^-5	1	NON_SYNONYMOUS_CODING CG43092 UPSTREAM CG43091 DOWNSTREAM CG43093 INTRON Usp12-46 & 1 other
2R	7132256	2R_7132256_SNP [dm3] 2R_11244751_SNP [dm6]	C	T	5.389e^-5	1	SYNONYMOUS_CODING CG13226 UPSTREAM CG34225	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4004060	3R_4004060_SNP [dm3] 3R_8178338_SNP [dm6]	G	T	5.420e^-5	1	INTRON grn
3R	7337642	3R_7337642_DEL [dm3] 3R_11511920_DEL [dm6]	AA	A	5.481e^-5	1	INTERGENIC
3L	841771	3L_841771_SNP [dm3] 3L_841771_SNP [dm6]	G	A	5.520e^-5	1	SYNONYMOUS_CODING Gr61a UPSTREAM CG13902
2R	12188073	2R_12188073_SNP [dm3] 2R_16300568_SNP [dm6]	G	A	5.724e^-5	1	EXON CR45232
3L	9542079	3L_9542079_SNP [dm3] 3L_9548979_SNP [dm6]	C	T	5.904e^-5	1	INTRON CG42673
3R	4054974	3R_4054974_SNP [dm3] 3R_8229252_SNP [dm6]	C	T	5.932e^-5	1	EXON CR45551 & 1 other	TF binding site mE1_TFBS_sbb
3L	3927281	3L_3927281_SNP [dm3] 3L_3927281_SNP [dm6]	G	A	6.048e^-5	1	INTRON Eip63F-1
2R	12797375	2R_12797375_SNP [dm3] 2R_16909870_SNP [dm6]	T	C	6.053e^-5	1	INTERGENIC
3L	12312950	3L_12312950_SNP [dm3] 3L_12319850_SNP [dm6]	G	A	6.118e^-5	1	INTERGENIC
2R	3120120	2R_3120120_SNP [dm3] 2R_7232615_SNP [dm6]	C	G	6.196e^-5	1	DOWNSTREAM Or43a INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	8260308	X_8260308_INS [dm3] X_8366275_INS [dm6]	T	TT	6.306e^-5	1	INTRON nAChRalpha3
3L	3896832	3L_3896832_SNP [dm3] 3L_3896832_SNP [dm6]	A	G	6.334e^-5	1	UPSTREAM CG14977 & 1 other DOWNSTREAM Ccz1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	13850021	2R_13850021_SNP [dm3] 2R_17962516_SNP [dm6]	T	G	6.337e^-5	1	INTERGENIC
3R	15104319	3R_15104319_SNP [dm3] 3R_19278597_SNP [dm6]	T	G	6.437e^-5	1	DOWNSTREAM CR44173 INTERGENIC
3L	11590890	3L_11590890_SNP [dm3] 3L_11597790_SNP [dm6]	A	T	6.501e^-5	1	INTRON CG7368
2L	4324850	2L_4324850_SNP [dm3] 2L_4324850_SNP [dm6]	T	C	6.529e^-5	1	UTR_5_PRIME CG16857
3L	15033345	3L_15033345_SNP [dm3] 3L_15040245_SNP [dm6]	G	A	6.560e^-5	1	INTRON Sytbeta	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11969585	2R_11969585_SNP [dm3] 2R_16082080_SNP [dm6]	A	G	6.605e^-5	1	UTR_3_PRIME Dg
3L	10787795	3L_10787795_SNP [dm3] 3L_10794695_SNP [dm6]	G	A	6.638e^-5	1	UPSTREAM CR44546 INTERGENIC
X	5589224	X_5589224_SNP [dm3] X_5695191_SNP [dm6]	A	G	6.653e^-5	1	UTR_5_PRIME CG3149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	5589162	X_5589162_SNP [dm3] X_5695129_SNP [dm6]	T	G	6.687e^-5	1	UTR_5_PRIME CG3149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	5589223	X_5589223_SNP [dm3] X_5695190_SNP [dm6]	G	T	6.687e^-5	1	UTR_5_PRIME CG3149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	5589232	X_5589232_SNP [dm3] X_5695199_SNP [dm6]	G	A	6.687e^-5	1	UTR_5_PRIME CG3149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	11919047	2R_11919047_SNP [dm3] 2R_16031542_SNP [dm6]	A	T	6.701e^-5	1	UPSTREAM SP2353 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2R	12034954	2R_12034954_SNP [dm3] 2R_16147449_SNP [dm6]	C	T	6.924e^-5	1	SYNONYMOUS_CODING Ext2	TF binding site mE1_TFBS_sens
2R	9652198	2R_9652198_SNP [dm3] 2R_13764693_SNP [dm6]	T	A	7.013e^-5	1	INTERGENIC
X	21212499	X_21212499_SNP [dm3] X_21341472_SNP [dm6]	G	A	7.104e^-5	1	SYNONYMOUS_CODING fliI	TF binding site mE1_TFBS_chinmo
2R	3074235	2R_3074235_SNP [dm3] 2R_7186730_SNP [dm6]	C	A	7.140e^-5	1	UPSTREAM pk INTRON pk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_ttk mE1_TFBS_zfh1
3R	18594715	3R_18594715_SNP [dm3] 3R_22768993_SNP [dm6]	A	C	7.175e^-5	1	NON_SYNONYMOUS_CODING CG43092 UPSTREAM CG43091 DOWNSTREAM CG43093 INTRON Usp12-46 & 1 other
3R	8894652	3R_8894652_SNP [dm3] 3R_13068930_SNP [dm6]	A	G	7.176e^-5	1	INTRON sim	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9448852	2L_9448852_SNP [dm3] 2L_9448852_SNP [dm6]	T	G	7.183e^-5	1	UPSTREAM numb INTRON numb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_zfh1
3R	18888101	3R_18888101_SNP [dm3] 3R_23062379_SNP [dm6]	A	G	7.189e^-5	1	SYNONYMOUS_CODING Ublcp1 DOWNSTREAM CG17111	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	9759415	3R_9759415_SNP [dm3] 3R_13933693_SNP [dm6]	T	C	7.321e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	10698001	2R_10698001_SNP [dm3] 2R_14810496_SNP [dm6]	T	G	7.395e^-5	1	DOWNSTREAM hui INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	3175403	2R_3175403_SNP [dm3] 2R_7287898_SNP [dm6]	T	C	7.422e^-5	1	INTRON pwn
X	5582847	X_5582847_SNP [dm3] X_5688814_SNP [dm6]	T	C	7.443e^-5	1	SYNONYMOUS_CODING CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	6554290	2R_6554290_SNP [dm3] 2R_10666785_SNP [dm6]	T	A	7.640e^-5	1	INTERGENIC
2R	3463662	2R_3463662_SNP [dm3] 2R_7576157_SNP [dm6]	C	T	7.748e^-5	1	INTRON Vps13
3L	6320920	3L_6320920_SNP [dm3] 3L_6327820_SNP [dm6]	C	A	7.816e^-5	1	NON_SYNONYMOUS_CODING Or65c DOWNSTREAM Or65b
2R	2744250	2R_2744250_DEL [dm3] 2R_6856745_DEL [dm6]	GT	G	7.826e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	4044504	X_4044504_SNP [dm3] X_4150471_SNP [dm6]	C	G	7.893e^-5	1	INTRON Fas2
3L	20943933	3L_20943933_SNP [dm3] 3L_20950833_SNP [dm6]	A	C	7.910e^-5	1	UPSTREAM CR45243 INTERGENIC
X	21927424	X_21927424_SNP [dm3] X_22525588_SNP [dm6]	A	C	7.996e^-5	1	INTRON CG17600
2R	9652195	2R_9652195_SNP [dm3] 2R_13764690_SNP [dm6]	A	G	8.045e^-5	1	INTERGENIC
2R	3094672	2R_3094672_SNP [dm3] 2R_7207167_SNP [dm6]	G	T	8.047e^-5	1	INTRON pk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17925773	2L_17925773_SNP [dm3] 2L_17925773_SNP [dm6]	A	G	8.202e^-5	1	INTERGENIC
2R	3138280	2R_3138280_DEL [dm3] 2R_7250775_DEL [dm6]	TCTTTGCATAACTGCCGGGG...	T	8.203e^-5	1	DOWNSTREAM Gadd45 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16536788	2R_16536788_SNP [dm3] 2R_20649283_SNP [dm6]	C	T	8.374e^-5	1	INTRON Lrt	TF binding site BDTNP1_TFBS_da
3L	19305983	3L_19305983_SNP [dm3] 3L_19312883_SNP [dm6]	T	C	8.389e^-5	1	INTRON pip	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8023906	2L_8023906_SNP [dm3] 2L_8023906_SNP [dm6]	A	T	8.500e^-5	1	INTRON Tg	regulatory region REDfly_CRMs
2L	9448933	2L_9448933_SNP [dm3] 2L_9448933_SNP [dm6]	A	C	8.624e^-5	1	UPSTREAM numb INTRON numb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	2999463	2R_2999463_SNP [dm3] 2R_7111958_SNP [dm6]	A	G	8.784e^-5	1	INTRON esn	TF binding site mE1_TFBS_inv
3R	18594641	3R_18594641_SNP [dm3] 3R_22768919_SNP [dm6]	T	G	8.822e^-5	1	UTR_3_PRIME CG43092 UPSTREAM CG43091 DOWNSTREAM CG43093 INTRON Usp12-46 & 1 other
2L	16104205	2L_16104205_SNP [dm3] 2L_16104205_SNP [dm6]	T	A	8.835e^-5	1	INTERGENIC
2R	17344488	2R_17344488_DEL [dm3] 2R_21456983_DEL [dm6]	CCTTCACTTCGC...	C	8.840e^-5	1	INTRON Sdc
2L	3644654	2L_3644654_SNP [dm3] 2L_3644654_SNP [dm6]	T	C	8.855e^-5	1	INTRON for
2L	9448840	2L_9448840_SNP [dm3] 2L_9448840_SNP [dm6]	G	T	8.915e^-5	1	UPSTREAM numb INTRON numb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	19271346	2R_19271346_SNP [dm3] 2R_23383823_SNP [dm6]	G	T	8.935e^-5	1	UPSTREAM CG13551 DOWNSTREAM CG30414 EXON CR44784	TF binding site BDTNP1_TFBS_dl mE1_TFBS_jumu
2L	1094905	2L_1094905_SNP [dm3] 2L_1094905_SNP [dm6]	C	A	9.011e^-5	1	INTRON CG4629
2L	16104207	2L_16104207_INS [dm3] 2L_16104207_INS [dm6]	T	TGTTTTAATCA...	9.091e^-5	1	INTERGENIC
2R	17137469	2R_17137469_SNP [dm3] 2R_21249964_SNP [dm6]	C	T	9.107e^-5	1	INTRON ASPP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
3R	21486868	3R_21486868_SNP [dm3] 3R_25661146_SNP [dm6]	T	C	9.126e^-5	1	UTR_5_PRIME Tnks UPSTREAM RASSF8 DOWNSTREAM CR45208	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	21927354	X_21927354_SNP [dm3] X_22525518_SNP [dm6]	A	T	9.187e^-5	1	INTRON CG17600
3L	487821	3L_487821_SNP [dm3] 3L_487821_SNP [dm6]	A	T	9.214e^-5	1	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8764069	3L_8764069_SNP [dm3] 3L_8770969_SNP [dm6]	G	A	9.243e^-5	1	INTRON Fhos
X	4632917	X_4632917_DEL [dm3] X_4738884_DEL [dm6]	AATA	A	9.302e^-5	1	INTERGENIC
2R	19059846	2R_19059846_DEL [dm3] 2R_23172323_DEL [dm6]	TAGTT	T	9.376e^-5	1	INTRON CG34371	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10699059	2R_10699059_SNP [dm3] 2R_14811554_SNP [dm6]	C	G	9.411e^-5	1	INTERGENIC
2R	19181570	2R_19181570_SNP [dm3] 2R_23294047_SNP [dm6]	G	T	9.502e^-5	1	INTERGENIC
3L	1989108	3L_1989108_SNP [dm3] 3L_1989108_SNP [dm6]	A	G	9.508e^-5	1	INTERGENIC
X	5306140	X_5306140_SNP [dm3] X_5412107_SNP [dm6]	T	C	9.571e^-5	1	DOWNSTREAM spoon INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	9524745	3L_9524745_SNP [dm3] 3L_9531645_SNP [dm6]	C	T	9.593e^-5	1	DOWNSTREAM Or67a INTERGENIC
3R	23665564	3R_23665564_SNP [dm3] 3R_27839842_SNP [dm6]	C	T	9.610e^-5	1	INTRON CG34353
3R	9550728	3R_9550728_SNP [dm3] 3R_13725006_SNP [dm6]	G	A	9.659e^-5	1	INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
3L	14566147	3L_14566147_SNP [dm3] 3L_14573047_SNP [dm6]	A	G	9.693e^-5	1	INTERGENIC
3L	3913380	3L_3913380_SNP [dm3] 3L_3913380_SNP [dm6]	G	C	9.713e^-5	1	INTRON Eip63F-1
3L	14915428	3L_14915428_DEL [dm3] 3L_14922328_DEL [dm6]	TTATT	T	9.794e^-5	1	INTRON DCX-EMAP
3L	13300569	3L_13300569_SNP [dm3] 3L_13307469_SNP [dm6]	G	T	9.981e^-5	1	INTERGENIC
2L	4080988	2L_4080988_SNP [dm3] 2L_4080988_SNP [dm6]	C	G	1.012e^-4	1	INTRON ed	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12540062	X_12540062_DEL [dm3] X_12646029_DEL [dm6]	AA	A	1.016e^-4	1	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12272568	2R_12272568_SNP [dm3] 2R_16385063_SNP [dm6]	G	A	1.031e^-4	1	UTR_3_PRIME CG43187
3L	487810	3L_487810_MNP [dm3] 3L_487810_MNP [dm6]	GGC	AAT	1.044e^-4	1	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19946648	3R_19946648_SNP [dm3] 3R_24120926_SNP [dm6]	A	G	1.046e^-4	1	INTRON Rootletin	TF binding site mE1_TFBS_chinmo
3R	19946650	3R_19946650_SNP [dm3] 3R_24120928_SNP [dm6]	G	A	1.046e^-4	1	INTRON Rootletin	TF binding site mE1_TFBS_chinmo
2L	8644654	2L_8644654_SNP [dm3] 2L_8644654_SNP [dm6]	T	C	1.051e^-4	1	INTRON Sema-1a
2L	8640893	2L_8640893_SNP [dm3] 2L_8640893_SNP [dm6]	C	T	1.055e^-4	1	INTRON Sema-1a
2L	8640900	2L_8640900_SNP [dm3] 2L_8640900_SNP [dm6]	T	C	1.055e^-4	1	INTRON Sema-1a
3L	17092543	3L_17092543_SNP [dm3] 3L_17099443_SNP [dm6]	G	A	1.063e^-4	1	INTRON Rbp6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17338389	X_17338389_SNP [dm3] X_17444356_SNP [dm6]	T	C	1.066e^-4	1	UPSTREAM CG12994 INTERGENIC
3L	9540803	3L_9540803_SNP [dm3] 3L_9547703_SNP [dm6]	C	T	1.077e^-4	1	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	5167796	2L_5167796_SNP [dm3] 2L_5167796_SNP [dm6]	T	G	1.079e^-4	1	SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	3057030	2R_3057030_SNP [dm3] 2R_7169525_SNP [dm6]	A	T	1.087e^-4	1	INTRON pk
3L	487850	3L_487850_SNP [dm3] 3L_487850_SNP [dm6]	A	T	1.089e^-4	1	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6008852	3L_6008852_SNP [dm3] 3L_6015752_SNP [dm6]	A	C	1.102e^-4	1	INTRON PVRAP
3L	19352444	3L_19352444_SNP [dm3] 3L_19359344_SNP [dm6]	A	G	1.106e^-4	1	INTRON CG32206
3L	13298824	3L_13298824_SNP [dm3] 3L_13305724_SNP [dm6]	T	C	1.110e^-4	1	INTERGENIC
2L	6867029	2L_6867029_SNP [dm3] 2L_6867029_SNP [dm6]	T	G	1.113e^-4	1	INTRON Nha1
2R	3056978	2R_3056978_SNP [dm3] 2R_7169473_SNP [dm6]	T	A	1.117e^-4	1	INTRON pk
2R	3134418	2R_3134418_SNP [dm3] 2R_7246913_SNP [dm6]	C	T	1.152e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9639670	2R_9639670_INS [dm3] 2R_13752165_INS [dm6]	G	GAGG	1.161e^-4	1	INTERGENIC
2R	3147482	2R_3147482_SNP [dm3] 2R_7259977_SNP [dm6]	G	A	1.164e^-4	1	NON_SYNONYMOUS_CODING CG1850	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	882610	2L_882610_INS [dm3] 2L_882610_INS [dm6]	T	TA	1.174e^-4	1	SPLICE_SITE_REGION CG15824 INTRON CG15824	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	19132710	2R_19132710_INS [dm3] 2R_23245187_INS [dm6]	T	TCCTCCGCGAGGGAGCT...	1.181e^-4	1	UTR_5_PRIME yip3 INTRON yip3
2L	259412	2L_259412_SNP [dm3] 2L_259412_SNP [dm6]	T	C	1.185e^-4	1	DOWNSTREAM CG17075 INTRON CG3645
2R	17753597	2R_17753597_SNP [dm3] 2R_21866092_SNP [dm6]	G	A	1.194e^-4	1	SYNONYMOUS_CODING comr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18069222	X_18069222_SNP [dm3] X_18175189_SNP [dm6]	T	G	1.199e^-4	1	DOWNSTREAM Frq1 INTERGENIC
3L	4015923	3L_4015923_SNP [dm3] 3L_4015923_SNP [dm6]	T	C	1.208e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
X	5663550	X_5663550_SNP [dm3] X_5769517_SNP [dm6]	C	T	1.211e^-4	1	INTRON CG42699 & 1 other
3L	13292441	3L_13292441_SNP [dm3] 3L_13299341_SNP [dm6]	G	T	1.217e^-4	1	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	7828839	3L_7828839_SNP [dm3] 3L_7835739_SNP [dm6]	T	A	1.221e^-4	1	INTRON Pdp1
2R	19271270	2R_19271270_SNP [dm3] 2R_23383747_SNP [dm6]	G	T	1.225e^-4	1	UPSTREAM CG13551 DOWNSTREAM CG30414 EXON CR44784	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
2L	5530044	2L_5530044_SNP [dm3] 2L_5530044_SNP [dm6]	G	A	1.226e^-4	1	SYNONYMOUS_CODING CG31915 DOWNSTREAM CG7277 INTRON Cap-D3
3L	14208740	3L_14208740_SNP [dm3] 3L_14215640_SNP [dm6]	C	T	1.235e^-4	1	INTRON nuf
2L	15088134	2L_15088134_SNP [dm3] 2L_15088134_SNP [dm6]	C	T	1.240e^-4	1	SYNONYMOUS_CODING CG15270
2L	8984695	2L_8984695_SNP [dm3] 2L_8984695_SNP [dm6]	C	G	1.243e^-4	1	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26124269	3R_26124269_SNP [dm3] 3R_30298547_SNP [dm6]	T	C	1.245e^-4	1	INTRON hdc
2R	7847469	2R_7847469_SNP [dm3] 2R_11959964_SNP [dm6]	A	T	1.247e^-4	1	INTRON CG13188
3L	10750823	3L_10750823_SNP [dm3] 3L_10757723_SNP [dm6]	A	T	1.248e^-4	1	INTERGENIC
2R	20387281	2R_20387281_SNP [dm3] 2R_24499758_SNP [dm6]	A	C	1.255e^-4	1	SYNONYMOUS_CODING Ssl
3R	15182375	3R_15182375_SNP [dm3] 3R_19356653_SNP [dm6]	C	A	1.261e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	14915447	3L_14915447_SNP [dm3] 3L_14922347_SNP [dm6]	G	T	1.264e^-4	1	INTRON DCX-EMAP
2R	7001635	2R_7001635_INS [dm3] 2R_11114130_INS [dm6]	C	CGTAACATTACAT...	1.290e^-4	1	INTRON luna
2R	6489078	2R_6489078_SNP [dm3] 2R_10601573_SNP [dm6]	A	C	1.295e^-4	1	INTRON psq
X	17485947	X_17485947_SNP [dm3] X_17591914_SNP [dm6]	T	G	1.304e^-4	1	DOWNSTREAM CG12992 INTRON CG12991
2R	6489113	2R_6489113_SNP [dm3] 2R_10601608_SNP [dm6]	T	C	1.308e^-4	1	INTRON psq
2R	18601522	2R_18601522_INS [dm3] 2R_22714017_INS [dm6]	T	TT	1.313e^-4	1	SPLICE_SITE_REGION CG30268 INTRON CG30268	TF binding site BDTNP1_TFBS_twi
2R	19136256	2R_19136256_SNP [dm3] 2R_23248733_SNP [dm6]	T	A	1.323e^-4	1	UPSTREAM RpL22-like INTERGENIC
3R	21769053	3R_21769053_SNP [dm3] 3R_25943331_SNP [dm6]	G	A	1.326e^-4	1	INTRON CCAP-R
3L	14915435	3L_14915435_INS [dm3] 3L_14922335_INS [dm6]	T	TACAATA	1.335e^-4	1	INTRON DCX-EMAP
3L	14915439	3L_14915439_SNP [dm3] 3L_14922339_SNP [dm6]	T	A	1.335e^-4	1	INTRON DCX-EMAP
2R	11554587	2R_11554587_SNP [dm3] 2R_15667082_SNP [dm6]	C	T	1.336e^-4	1	INTRON fus	TF binding site BDTNP1_TFBS_z
2R	3095244	2R_3095244_SNP [dm3] 2R_7207739_SNP [dm6]	G	T	1.337e^-4	1	INTRON pk
3L	17303826	3L_17303826_SNP [dm3] 3L_17310726_SNP [dm6]	A	T	1.338e^-4	1	INTERGENIC
2R	20133322	2R_20133322_SNP [dm3] 2R_24245799_SNP [dm6]	T	C	1.339e^-4	1	INTRON nord	TF binding site mE1_TFBS_chinmo
3R	18992382	3R_18992382_SNP [dm3] 3R_23166660_SNP [dm6]	T	A	1.350e^-4	1	INTERGENIC
3L	9018929	3L_9018929_SNP [dm3] 3L_9025829_SNP [dm6]	G	A	1.361e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8032660	3L_8032660_SNP [dm3] 3L_8039560_SNP [dm6]	C	G	1.364e^-4	1	INTRON nmo	TF binding site mE1_TFBS_inv
2L	7629630	2L_7629630_SNP [dm3] 2L_7629630_SNP [dm6]	T	A	1.366e^-4	1	INTERGENIC
2R	6560183	2R_6560183_SNP [dm3] 2R_10672678_SNP [dm6]	G	A	1.370e^-4	1	UPSTREAM stan INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13849987	2R_13849987_SNP [dm3] 2R_17962482_SNP [dm6]	C	A	1.374e^-4	1	INTERGENIC
2R	20136057	2R_20136057_SNP [dm3] 2R_24248534_SNP [dm6]	C	T	1.387e^-4	1	DOWNSTREAM Ir60a INTRON nord	TF binding site mE1_TFBS_chinmo
2R	20136106	2R_20136106_SNP [dm3] 2R_24248583_SNP [dm6]	A	G	1.387e^-4	1	DOWNSTREAM Ir60a INTRON nord	TF binding site mE1_TFBS_chinmo
2R	9497315	2R_9497315_DEL [dm3] 2R_13609810_DEL [dm6]	GGTAACACGTAG...	G	1.388e^-4	1	UPSTREAM CG12464 INTERGENIC
2R	20386895	2R_20386895_SNP [dm3] 2R_24499372_SNP [dm6]	A	G	1.396e^-4	1	UTR_3_PRIME Ssl DOWNSTREAM Yu	TF binding site mE1_TFBS_chinmo
2L	10096058	2L_10096058_SNP [dm3] 2L_10096058_SNP [dm6]	C	G	1.399e^-4	1	INTRON CG44153 & 1 other
2R	3157912	2R_3157912_SNP [dm3] 2R_7270407_SNP [dm6]	G	T	1.406e^-4	1	INTERGENIC
2L	10358018	2L_10358018_SNP [dm3] 2L_10358018_SNP [dm6]	G	A	1.413e^-4	1	UTR_3_PRIME CG5045 DOWNSTREAM Cand1 & 1 other
2L	12727406	2L_12727406_SNP [dm3] 2L_12727406_SNP [dm6]	T	G	1.413e^-4	1	INTRON MRP
2R	3145497	2R_3145497_SNP [dm3] 2R_7257992_SNP [dm6]	C	T	1.415e^-4	1	DOWNSTREAM CG1850 INTERGENIC
X	20784079	X_20784079_SNP [dm3] X_20913052_SNP [dm6]	T	C	1.417e^-4	1	INTRON shakB
3L	1216255	3L_1216255_SNP [dm3] 3L_1216255_SNP [dm6]	A	C	1.420e^-4	1	INTRON mwh	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
X	11200856	X_11200856_MNP [dm3] X_11306823_MNP [dm6]	TAG	ATC	1.422e^-4	1	INTERGENIC
2L	9060582	2L_9060582_SNP [dm3] 2L_9060582_SNP [dm6]	G	A	1.435e^-4	1	INTRON CG31708	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15018298	3L_15018298_SNP [dm3] 3L_15025198_SNP [dm6]	C	T	1.437e^-4	1	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	22063201	2L_22063201_SNP [dm3] 2L_22063201_SNP [dm6]	A	G	1.438e^-4	1	INTERGENIC
3R	9392207	3R_9392207_SNP [dm3] 3R_13566485_SNP [dm6]	C	A	1.444e^-4	1	INTERGENIC
3L	14915480	3L_14915480_SNP [dm3] 3L_14922380_SNP [dm6]	C	A	1.446e^-4	1	INTRON DCX-EMAP
2R	19840274	2R_19840274_SNP [dm3] 2R_23952751_SNP [dm6]	G	C	1.461e^-4	1	SYNONYMOUS_CODING CG3803 DOWNSTREAM fzr2 & 1 other
2R	7674193	2R_7674193_SNP [dm3] 2R_11786688_SNP [dm6]	A	C	1.464e^-4	1	INTRON ths
X	5589230	X_5589230_SNP [dm3] X_5695197_SNP [dm6]	T	C	1.465e^-4	1	UTR_5_PRIME CG3149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	2720850	3R_2720850_SNP [dm3] 3R_6895128_SNP [dm6]	C	T	1.468e^-4	1	DOWNSTREAM CR44932 INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	13257628	3R_13257628_SNP [dm3] 3R_17431906_SNP [dm6]	T	C	1.477e^-4	1	INTRON CG5873
3L	8771125	3L_8771125_SNP [dm3] 3L_8778025_SNP [dm6]	G	T	1.479e^-4	1	INTRON Fhos
3L	17999848	3L_17999848_SNP [dm3] 3L_18006748_SNP [dm6]	T	A	1.483e^-4	1	INTRON Eip75B	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2L	7753532	2L_7753532_SNP [dm3] 2L_7753532_SNP [dm6]	C	G	1.489e^-4	1	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
3L	10900076	3L_10900076_SNP [dm3] 3L_10906976_SNP [dm6]	A	G	1.489e^-4	1	INTERGENIC
3L	487854	3L_487854_SNP [dm3] 3L_487854_SNP [dm6]	A	T	1.499e^-4	1	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17128023	3L_17128023_SNP [dm3] 3L_17134923_SNP [dm6]	G	A	1.500e^-4	1	INTRON Rbp6
3L	15018320	3L_15018320_SNP [dm3] 3L_15025220_SNP [dm6]	T	A	1.525e^-4	1	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	7329306	3R_7329306_SNP [dm3] 3R_11503584_SNP [dm6]	A	G	1.549e^-4	1	SYNONYMOUS_CODING dpr5
3L	6581189	3L_6581189_SNP [dm3] 3L_6588089_SNP [dm6]	C	T	1.551e^-4	1	INTRON CG18769 & 1 other
3R	21647677	3R_21647677_SNP [dm3] 3R_25821955_SNP [dm6]	A	C	1.554e^-4	1	INTERGENIC
3L	488023	3L_488023_SNP [dm3] 3L_488023_SNP [dm6]	G	A	1.557e^-4	1	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	7518763	2L_7518763_SNP [dm3] 2L_7518763_SNP [dm6]	C	T	1.563e^-4	1	UPSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14205717	3L_14205717_SNP [dm3] 3L_14212617_SNP [dm6]	T	A	1.563e^-4	1	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2R	9858720	2R_9858720_SNP [dm3] 2R_13971215_SNP [dm6]	T	C	1.579e^-4	1	UTR_5_PRIME St4 UPSTREAM St4 DOWNSTREAM CG18568
3L	7828841	3L_7828841_SNP [dm3] 3L_7835741_SNP [dm6]	C	T	1.595e^-4	1	INTRON Pdp1
2R	3140868	2R_3140868_SNP [dm3] 2R_7253363_SNP [dm6]	C	T	1.598e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	7337084	3R_7337084_SNP [dm3] 3R_11511362_SNP [dm6]	A	C	1.621e^-4	1	INTERGENIC
3R	21647678	3R_21647678_SNP [dm3] 3R_25821956_SNP [dm6]	T	C	1.627e^-4	1	INTERGENIC
2L	7753530	2L_7753530_SNP [dm3] 2L_7753530_SNP [dm6]	A	T	1.628e^-4	1	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
X	19862728	X_19862728_SNP [dm3] X_19968695_SNP [dm6]	C	A	1.634e^-4	1	UTR_3_PRIME Nep3 DOWNSTREAM Nep3
X	11200862	X_11200862_SNP [dm3] X_11306829_SNP [dm6]	G	C	1.635e^-4	1	INTERGENIC
X	14707934	X_14707934_SNP [dm3] X_14813901_SNP [dm6]	C	G	1.638e^-4	1	INTRON rut
2R	9106005	2R_9106005_INS [dm3] 2R_13218500_INS [dm6]	T	TCTGAAATT	1.639e^-4	1	DOWNSTREAM CG4646 INTRON CG4630
2R	19520319	2R_19520319_SNP [dm3] 2R_23632796_SNP [dm6]	T	C	1.639e^-4	1	UTR_5_PRIME retn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	12823881	3L_12823881_SNP [dm3] 3L_12830781_SNP [dm6]	T	A	1.654e^-4	1	INTRON CG10960	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3L	12823680	3L_12823680_SNP [dm3] 3L_12830580_SNP [dm6]	G	A	1.662e^-4	1	INTRON CG10960	TF binding site mE1_TFBS_cnc
3L	15227947	3L_15227947_SNP [dm3] 3L_15234847_SNP [dm6]	G	T	1.664e^-4	1	UPSTREAM Tollo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	16753184	X_16753184_SNP [dm3] X_16859151_SNP [dm6]	T	G	1.680e^-4	1	INTRON CG13003
X	14759375	X_14759375_SNP [dm3] X_14865342_SNP [dm6]	T	C	1.682e^-4	1	SYNONYMOUS_CODING CG9518 INTRON Flo2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	20798213	3R_20798213_SNP [dm3] 3R_24972491_SNP [dm6]	T	A	1.695e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16104210	2L_16104210_SNP [dm3] 2L_16104210_SNP [dm6]	G	A	1.695e^-4	1	INTERGENIC
X	9602106	X_9602106_SNP [dm3] X_9708073_SNP [dm6]	C	T	1.700e^-4	1	INTERGENIC
3R	22490622	3R_22490622_SNP [dm3] 3R_26664900_SNP [dm6]	G	A	1.701e^-4	1	INTRON beat-VII	TF binding site BDTNP1_TFBS_twi
2L	10807152	2L_10807152_SNP [dm3] 2L_10807152_SNP [dm6]	G	T	1.702e^-4	1	INTRON Nos	TF binding site mE1_TFBS_chinmo
2L	5167934	2L_5167934_SNP [dm3] 2L_5167934_SNP [dm6]	T	A	1.702e^-4	1	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	8894635	3R_8894635_SNP [dm3] 3R_13068913_SNP [dm6]	A	G	1.710e^-4	1	INTRON sim	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	3146411	2R_3146411_SNP [dm3] 2R_7258906_SNP [dm6]	G	A	1.713e^-4	1	UTR_3_PRIME CG1850	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	2909815	2R_2909815_SNP [dm3] 2R_7022310_SNP [dm6]	A	T	1.713e^-4	1	INTERGENIC
3L	8383540	3L_8383540_SNP [dm3] 3L_8390440_SNP [dm6]	C	T	1.719e^-4	1	UTR_3_PRIME ImpE1	TF binding site mE1_TFBS_HSA
X	19071150	X_19071150_SNP [dm3] X_19177117_SNP [dm6]	C	A	1.723e^-4	1	UTR_3_PRIME CG7556
X	5580549	X_5580549_SNP [dm3] X_5686516_SNP [dm6]	T	C	1.730e^-4	1	NON_SYNONYMOUS_CODING CG3160
2R	14564639	2R_14564639_SNP [dm3] 2R_18677134_SNP [dm6]	G	A	1.733e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13174532	3L_13174532_SNP [dm3] 3L_13181432_SNP [dm6]	T	A	1.743e^-4	1	INTERGENIC
X	5189648	X_5189648_SNP [dm3] X_5295615_SNP [dm6]	C	G	1.743e^-4	1	UPSTREAM CG42749 INTERGENIC
3L	11549992	3L_11549992_SNP [dm3] 3L_11556892_SNP [dm6]	G	T	1.755e^-4	1	INTRON Mob2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11191924	3L_11191924_SNP [dm3] 3L_11198824_SNP [dm6]	A	G	1.762e^-4	1	SYNONYMOUS_CODING Plod UPSTREAM CG7607	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8268043	2L_8268043_SNP [dm3] 2L_8268043_SNP [dm6]	A	T	1.774e^-4	1	INTRON Btk29A	TF binding site mE1_TFBS_D
3L	11550013	3L_11550013_SNP [dm3] 3L_11556913_SNP [dm6]	G	A	1.782e^-4	1	INTRON Mob2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	13164764	X_13164764_INS [dm3] X_13270731_INS [dm6]	A	ATA	1.788e^-4	1	INTRON HDAC4
2R	3147375	2R_3147375_SNP [dm3] 2R_7259870_SNP [dm6]	C	A	1.790e^-4	1	SYNONYMOUS_CODING CG1850	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17925786	2L_17925786_SNP [dm3] 2L_17925786_SNP [dm6]	C	T	1.796e^-4	1	INTERGENIC
2R	3158907	2R_3158907_SNP [dm3] 2R_7271402_SNP [dm6]	C	A	1.799e^-4	1	DOWNSTREAM Br140 INTERGENIC
X	19071149	X_19071149_SNP [dm3] X_19177116_SNP [dm6]	T	A	1.808e^-4	1	UTR_3_PRIME CG7556
3R	4019491	3R_4019491_SNP [dm3] 3R_8193769_SNP [dm6]	T	G	1.814e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5735555	3L_5735555_SNP [dm3] 3L_5742455_SNP [dm6]	C	T	1.816e^-4	1	UTR_3_PRIME sif INTRON sif
3L	3894594	3L_3894594_SNP [dm3] 3L_3894594_SNP [dm6]	C	A	1.817e^-4	1	UTR_3_PRIME Fie DOWNSTREAM Gr63a
3L	11549950	3L_11549950_SNP [dm3] 3L_11556850_SNP [dm6]	C	G	1.819e^-4	1	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	16753169	X_16753169_SNP [dm3] X_16859136_SNP [dm6]	G	C	1.823e^-4	1	INTRON CG13003
3L	11549980	3L_11549980_SNP [dm3] 3L_11556880_SNP [dm6]	A	T	1.823e^-4	1	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	1668492	3R_1668492_SNP [dm3] 3R_5842770_SNP [dm6]	T	A	1.838e^-4	1	INTRON CG1213
3R	18888098	3R_18888098_SNP [dm3] 3R_23062376_SNP [dm6]	A	T	1.841e^-4	1	SYNONYMOUS_CODING Ublcp1 DOWNSTREAM CG17111	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	26124276	3R_26124276_SNP [dm3] 3R_30298554_SNP [dm6]	A	G	1.849e^-4	1	INTRON hdc
X	21927585	X_21927585_SNP [dm3] X_22525749_SNP [dm6]	A	G	1.863e^-4	1	INTRON CG17600
3L	11550001	3L_11550001_SNP [dm3] 3L_11556901_SNP [dm6]	T	C	1.867e^-4	1	INTRON Mob2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	21917684	X_21917684_SNP [dm3] X_22515848_SNP [dm6]	T	G	1.868e^-4	1	UPSTREAM CR43962 INTRON CG17600	TF binding site mE1_TFBS_HSA
2L	1053266	2L_1053266_SNP [dm3] 2L_1053266_SNP [dm6]	T	G	1.873e^-4	1	INTRON S	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3984716	2L_3984716_SNP [dm3] 2L_3984716_SNP [dm6]	C	A	1.876e^-4	1	INTRON fred
3L	13298231	3L_13298231_SNP [dm3] 3L_13305131_SNP [dm6]	T	C	1.887e^-4	1	INTERGENIC
2L	10528382	2L_10528382_SNP [dm3] 2L_10528382_SNP [dm6]	A	G	1.890e^-4	1	UPSTREAM Lip4 INTRON Lip4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13475322	3R_13475322_SNP [dm3] 3R_17649600_SNP [dm6]	C	A	1.897e^-4	1	INTRON CG14322
X	21917686	X_21917686_SNP [dm3] X_22515850_SNP [dm6]	A	C	1.903e^-4	1	UPSTREAM CR43962 INTRON CG17600	TF binding site mE1_TFBS_HSA
3L	12460063	3L_12460063_SNP [dm3] 3L_12466963_SNP [dm6]	A	T	1.909e^-4	1	INTRON eyg	TF binding site BDTNP1_TFBS_z
3L	20964980	3L_20964980_SNP [dm3] 3L_20971880_SNP [dm6]	T	C	1.909e^-4	1	NON_SYNONYMOUS_CODING CG33286	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21927301	X_21927301_SNP [dm3] X_22525465_SNP [dm6]	A	G	1.914e^-4	1	INTRON CG17600
3L	7484430	3L_7484430_SNP [dm3] 3L_7491330_SNP [dm6]	G	A	1.918e^-4	1	UPSTREAM Cyp316a1 INTERGENIC
3R	7301904	3R_7301904_SNP [dm3] 3R_11476182_SNP [dm6]	C	A	1.924e^-4	1	INTERGENIC
X	3210958	X_3210958_SNP [dm3] X_3316925_SNP [dm6]	G	A	1.929e^-4	1	UPSTREAM CG10793 INTRON dnc & 1 other
2R	19136254	2R_19136254_SNP [dm3] 2R_23248731_SNP [dm6]	T	C	1.936e^-4	1	UPSTREAM RpL22-like INTERGENIC
3R	25464897	3R_25464897_DEL [dm3] 3R_29639175_DEL [dm6]	TAT	T	1.940e^-4	1	INTRON Dop1R2
2R	7847126	2R_7847126_SNP [dm3] 2R_11959621_SNP [dm6]	C	A	1.952e^-4	1	INTRON CG13188
3L	17303856	3L_17303856_SNP [dm3] 3L_17310756_SNP [dm6]	T	A	1.954e^-4	1	INTERGENIC
X	2709528	X_2709528_SNP [dm3] X_2815495_SNP [dm6]	A	C	1.955e^-4	1	INTRON kirre
3R	9999082	3R_9999082_SNP [dm3] 3R_14173360_SNP [dm6]	T	G	1.957e^-4	1	UTR_3_PRIME Dop1R1
3R	20167532	3R_20167532_SNP [dm3] 3R_24341810_SNP [dm6]	C	T	1.957e^-4	1	UPSTREAM Ms INTRON Ms	TF binding site mE1_TFBS_cad
3R	15180582	3R_15180582_SNP [dm3] 3R_19354860_SNP [dm6]	A	C	1.967e^-4	1	UTR_3_PRIME CG43203	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2R	3159812	2R_3159812_DEL [dm3] 2R_7272307_DEL [dm6]	TCTGCTTGTA	T	1.972e^-4	1	UTR_3_PRIME Br140 DOWNSTREAM Br140
2R	3159824	2R_3159824_DEL [dm3] 2R_7272319_DEL [dm6]	TACCATTAGGTTTAAACAAT...	T	1.972e^-4	1	UTR_3_PRIME Br140 DOWNSTREAM Br140
X	19371767	X_19371767_SNP [dm3] X_19477734_SNP [dm6]	T	C	1.973e^-4	1	SYNONYMOUS_CODING CG32533	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14030351	3R_14030351_SNP [dm3] 3R_18204629_SNP [dm6]	C	T	1.976e^-4	1	INTRON CG7985
3L	487817	3L_487817_SNP [dm3] 3L_487817_SNP [dm6]	G	A	1.978e^-4	1	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13778978	3L_13778978_SNP [dm3] 3L_13785878_SNP [dm6]	C	A	1.987e^-4	1	INTRON bru-3
2L	3401959	2L_3401959_SNP [dm3] 2L_3401959_SNP [dm6]	G	T	1.988e^-4	1	INTERGENIC
3L	8032552	3L_8032552_SNP [dm3] 3L_8039452_SNP [dm6]	T	C	1.990e^-4	1	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	19689559	X_19689559_SNP [dm3] X_19795526_SNP [dm6]	A	G	2.004e^-4	1	INTERGENIC
2R	6489080	2R_6489080_SNP [dm3] 2R_10601575_SNP [dm6]	A	C	2.006e^-4	1	INTRON psq
3R	26124267	3R_26124267_INS [dm3] 3R_30298545_INS [dm6]	C	CTGTCCCTAA	2.007e^-4	1	INTRON hdc
3L	17937169	3L_17937169_MNP [dm3] 3L_17944069_MNP [dm6]	AAA	TTG	2.013e^-4	1	INTRON CG43174
3R	15097189	3R_15097189_SNP [dm3] 3R_19271467_SNP [dm6]	G	A	2.025e^-4	1	INTERGENIC
3L	1817301	3L_1817301_SNP [dm3] 3L_1817301_SNP [dm6]	A	G	2.040e^-4	1	INTRON GV1
3R	2720828	3R_2720828_SNP [dm3] 3R_6895106_SNP [dm6]	C	T	2.041e^-4	1	DOWNSTREAM CR44932 INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	21377068	3L_21377068_SNP [dm3] 3L_21383968_SNP [dm6]	G	C	2.041e^-4	1	INTRON rgn
2R	6489073	2R_6489073_SNP [dm3] 2R_10601568_SNP [dm6]	A	C	2.051e^-4	1	INTRON psq
3L	7533044	3L_7533044_SNP [dm3] 3L_7539944_SNP [dm6]	C	A	2.052e^-4	1	UTR_3_PRIME lqf UPSTREAM CG16998 DOWNSTREAM CG32374
X	19689605	X_19689605_SNP [dm3] X_19795572_SNP [dm6]	A	G	2.068e^-4	1	INTERGENIC
2L	18955089	2L_18955089_SNP [dm3] 2L_18955089_SNP [dm6]	C	A	2.071e^-4	1	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2R	11692114	2R_11692114_DEL [dm3] 2R_15804609_DEL [dm6]	CGTC	C	2.074e^-4	1	INTRON tun & 1 other
2L	9448823	2L_9448823_SNP [dm3] 2L_9448823_SNP [dm6]	A	T	2.075e^-4	1	INTRON numb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	467273	3L_467273_SNP [dm3] 3L_467273_SNP [dm6]	T	C	2.075e^-4	1	INTRON klar
3R	23845438	3R_23845438_SNP [dm3] 3R_28019716_SNP [dm6]	G	T	2.076e^-4	1	INTERGENIC
2R	19576337	2R_19576337_DEL [dm3] 2R_23688814_DEL [dm6]	AGGAGACTAA	A	2.076e^-4	1	DOWNSTREAM St3 INTRON Pal2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3942607	3L_3942607_SNP [dm3] 3L_3942607_SNP [dm6]	T	G	2.083e^-4	1	UPSTREAM CG14982 & 1 other INTERGENIC
3L	9542263	3L_9542263_SNP [dm3] 3L_9549163_SNP [dm6]	A	T	2.099e^-4	1	INTRON CG42673
2R	13846604	2R_13846604_SNP [dm3] 2R_17959099_SNP [dm6]	T	G	2.100e^-4	1	INTERGENIC
2R	13849998	2R_13849998_SNP [dm3] 2R_17962493_SNP [dm6]	A	C	2.106e^-4	1	INTERGENIC
2R	3141622	2R_3141622_SNP [dm3] 2R_7254117_SNP [dm6]	T	C	2.126e^-4	1	UPSTREAM CR45280 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	15713895	2R_15713895_SNP [dm3] 2R_19826390_SNP [dm6]	T	C	2.126e^-4	1	UPSTREAM Toll-7 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	9651999	2R_9651999_SNP [dm3] 2R_13764494_SNP [dm6]	T	C	2.128e^-4	1	INTERGENIC
2L	8502806	2L_8502806_SNP [dm3] 2L_8502806_SNP [dm6]	G	C	2.133e^-4	1	INTRON Dh31
2L	8345043	2L_8345043_INS [dm3] 2L_8345043_INS [dm6]	A	ACATATA	2.134e^-4	1	UPSTREAM CR45371 DOWNSTREAM CG14273 INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	8502836	2L_8502836_DEL [dm3] 2L_8502836_DEL [dm6]	TTTTC	T	2.140e^-4	1	INTRON Dh31
3R	5475523	3R_5475523_SNP [dm3] 3R_9649801_SNP [dm6]	T	A	2.147e^-4	1	SPLICE_SITE_REGION Dh44 UTR_3_PRIME Dh44
2R	9607912	2R_9607912_INS [dm3] 2R_13720407_INS [dm6]	A	ACGCCAGTCGACGAA...	2.147e^-4	1	INTRON fas
X	12376044	X_12376044_SNP [dm3] X_12482011_SNP [dm6]	T	A	2.151e^-4	1	INTERGENIC
3L	487852	3L_487852_SNP [dm3] 3L_487852_SNP [dm6]	G	T	2.157e^-4	1	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	3518300	X_3518300_SNP [dm3] X_3624267_SNP [dm6]	G	C	2.166e^-4	1	INTRON AstA-R1
2R	4460951	2R_4460951_SNP [dm3] 2R_8573446_SNP [dm6]	G	A	2.167e^-4	1	UTR_3_PRIME CG42326	TF binding site mE1_TFBS_cad
3L	9534972	3L_9534972_SNP [dm3] 3L_9541872_SNP [dm6]	T	C	2.205e^-4	1	DOWNSTREAM Ir67a INTERGENIC
2L	13875383	2L_13875383_SNP [dm3] 2L_13875383_SNP [dm6]	T	G	2.220e^-4	1	INTRON CenG1A
2L	5168150	2L_5168150_SNP [dm3] 2L_5168150_SNP [dm6]	T	C	2.234e^-4	1	SYNONYMOUS_CODING Msp300 INTRON Msp300
X	22291156	X_22291156_SNP [dm3] X_22889320_SNP [dm6]	A	G	2.244e^-4	1	INTERGENIC	transposable element FlyBase
3R	15104329	3R_15104329_SNP [dm3] 3R_19278607_SNP [dm6]	T	C	2.248e^-4	1	DOWNSTREAM CR44173 INTERGENIC
2L	6577300	2L_6577300_SNP [dm3] 2L_6577300_SNP [dm6]	T	G	2.251e^-4	1	INTRON CG11319
2L	15367078	2L_15367078_SNP [dm3] 2L_15367078_SNP [dm6]	G	A	2.255e^-4	1	INTERGENIC
2L	1567127	2L_1567127_SNP [dm3] 2L_1567127_SNP [dm6]	T	A	2.260e^-4	1	INTRON haf
2R	6974167	2R_6974167_SNP [dm3] 2R_11086662_SNP [dm6]	C	T	2.264e^-4	1	UTR_5_PRIME CG43189 INTRON luna & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Kr
3L	14207325	3L_14207325_SNP [dm3] 3L_14214225_SNP [dm6]	T	C	2.271e^-4	1	INTRON nuf	TF binding site mE1_TFBS_inv
2L	8502822	2L_8502822_DEL [dm3] 2L_8502822_DEL [dm6]	TACGTTTCATT...	GG	2.284e^-4	1	INTRON Dh31
2L	8502858	2L_8502858_SNP [dm3] 2L_8502858_SNP [dm6]	A	C	2.284e^-4	1	INTRON Dh31
2L	4678645	2L_4678645_SNP [dm3] 2L_4678645_SNP [dm6]	A	T	2.290e^-4	1	INTERGENIC
2L	4678646	2L_4678646_SNP [dm3] 2L_4678646_SNP [dm6]	T	A	2.290e^-4	1	INTERGENIC
2R	12660221	2R_12660221_SNP [dm3] 2R_16772716_SNP [dm6]	T	C	2.294e^-4	1	UPSTREAM unc-104 DOWNSTREAM Sod2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	15942918	3R_15942918_SNP [dm3] 3R_20117196_SNP [dm6]	G	C	2.300e^-4	1	DOWNSTREAM CG10887 INTERGENIC
2L	17484450	2L_17484450_SNP [dm3] 2L_17484450_SNP [dm6]	G	A	2.302e^-4	1	UPSTREAM CG5131 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	6960427	3L_6960427_SNP [dm3] 3L_6967327_SNP [dm6]	T	A	2.303e^-4	1	SPLICE_SITE_REGION CG10064 DOWNSTREAM Mis12 INTRON CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	21313522	X_21313522_SNP [dm3] X_21442495_SNP [dm6]	A	G	2.307e^-4	1	SYNONYMOUS_CODING CG42343	TF binding site mE1_TFBS_HSA
3L	6008880	3L_6008880_SNP [dm3] 3L_6015780_SNP [dm6]	G	A	2.317e^-4	1	INTRON PVRAP
X	19433619	X_19433619_SNP [dm3] X_19539586_SNP [dm6]	A	G	2.318e^-4	1	INTRON CG32532
3L	8385554	3L_8385554_SNP [dm3] 3L_8392454_SNP [dm6]	T	C	2.322e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	14373395	3R_14373395_SNP [dm3] 3R_18547673_SNP [dm6]	A	T	2.328e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8385849	3L_8385849_SNP [dm3] 3L_8392749_SNP [dm6]	G	C	2.329e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
3L	8385850	3L_8385850_SNP [dm3] 3L_8392750_SNP [dm6]	A	T	2.329e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
3L	8385853	3L_8385853_DEL [dm3] 3L_8392753_DEL [dm6]	ACTAACTAAAAATAAAAGCC...	A	2.329e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
2L	3827240	2L_3827240_SNP [dm3] 2L_3827240_SNP [dm6]	A	G	2.338e^-4	1	DOWNSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1664890	3R_1664890_SNP [dm3] 3R_5839168_SNP [dm6]	G	A	2.345e^-4	1	DOWNSTREAM CG1208 INTERGENIC
X	6116962	X_6116962_SNP [dm3] X_6222929_SNP [dm6]	A	G	2.346e^-4	1	DOWNSTREAM sqh & 1 other INTERGENIC
3R	5478518	3R_5478518_SNP [dm3] 3R_9652796_SNP [dm6]	A	T	2.347e^-4	1	UTR_3_PRIME CG43441 INTRON CG9492	TF binding site BDTNP1_TFBS_da
2L	1567907	2L_1567907_SNP [dm3] 2L_1567907_SNP [dm6]	T	A	2.348e^-4	1	INTRON haf
3L	487818	3L_487818_SNP [dm3] 3L_487818_SNP [dm6]	C	A	2.355e^-4	1	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7087232	3L_7087232_SNP [dm3] 3L_7094132_SNP [dm6]	G	T	2.365e^-4	1	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16296423	2R_16296423_SNP [dm3] 2R_20408918_SNP [dm6]	A	G	2.365e^-4	1	INTERGENIC
2R	1395808	2R_1395808_SNP [dm3] 2R_5508303_SNP [dm6]	A	G	2.393e^-4	1	UPSTREAM TpnC4 INTRON CG30438
2L	4678558	2L_4678558_SNP [dm3] 2L_4678558_SNP [dm6]	C	A	2.395e^-4	1	INTERGENIC
3L	14915357	3L_14915357_SNP [dm3] 3L_14922257_SNP [dm6]	C	T	2.411e^-4	1	INTRON DCX-EMAP
3R	403632	3R_403632_INS [dm3] 3R_4577910_INS [dm6]	A	AA	2.411e^-4	1	DOWNSTREAM CG32945 INTERGENIC
X	5921994	X_5921994_SNP [dm3] X_6027961_SNP [dm6]	A	C	2.413e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14460693	3L_14460693_SNP [dm3] 3L_14467593_SNP [dm6]	A	T	2.417e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_hb
3L	8032559	3L_8032559_INS [dm3] 3L_8039459_INS [dm6]	C	CC	2.418e^-4	1	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	11200872	X_11200872_DEL [dm3] X_11306839_DEL [dm6]	ATTT	C	2.429e^-4	1	INTERGENIC
2R	13850013	2R_13850013_SNP [dm3] 2R_17962508_SNP [dm6]	G	T	2.432e^-4	1	INTERGENIC
X	21927625	X_21927625_SNP [dm3] X_22525789_SNP [dm6]	T	A	2.445e^-4	1	INTRON CG17600
3L	17143780	3L_17143780_SNP [dm3] 3L_17150680_SNP [dm6]	T	A	2.446e^-4	1	INTRON Rbp6	TF binding site mE1_TFBS_HSA
3L	3887429	3L_3887429_SNP [dm3] 3L_3887429_SNP [dm6]	C	T	2.448e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8610557	2R_8610557_SNP [dm3] 2R_12723052_SNP [dm6]	G	T	2.448e^-4	1	INTRON CG42663
2R	15713881	2R_15713881_SNP [dm3] 2R_19826376_SNP [dm6]	G	T	2.450e^-4	1	UPSTREAM Toll-7 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	12688304	X_12688304_SNP [dm3] X_12794271_SNP [dm6]	C	T	2.460e^-4	1	SYNONYMOUS_CODING Pde9	TF binding site mE1_TFBS_chinmo
3R	10272585	3R_10272585_SNP [dm3] 3R_14446863_SNP [dm6]	T	C	2.468e^-4	1	INTRON cv-c
3L	3887093	3L_3887093_SNP [dm3] 3L_3887093_SNP [dm6]	C	T	2.478e^-4	1	INTERGENIC
X	6116943	X_6116943_SNP [dm3] X_6222910_SNP [dm6]	G	A	2.479e^-4	1	DOWNSTREAM sqh & 1 other INTERGENIC
X	17628290	X_17628290_SNP [dm3] X_17734257_SNP [dm6]	G	A	2.485e^-4	1	INTRON CG42684	TF binding site BDTNP1_TFBS_dl
3R	9520020	3R_9520020_SNP [dm3] 3R_13694298_SNP [dm6]	C	G	2.501e^-4	1	SYNONYMOUS_CODING CG14367 DOWNSTREAM flfl & 1 other
X	11200910	X_11200910_SNP [dm3] X_11306877_SNP [dm6]	C	T	2.525e^-4	1	INTERGENIC
3R	14348680	3R_14348680_SNP [dm3] 3R_18522958_SNP [dm6]	A	G	2.531e^-4	1	INTRON fru
3L	1793166	3L_1793166_SNP [dm3] 3L_1793166_SNP [dm6]	G	T	2.531e^-4	1	NON_SYNONYMOUS_CODING dlt INTRON alpha-Spec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3409032	2L_3409032_SNP [dm3] 2L_3409032_SNP [dm6]	T	A	2.542e^-4	1	INTRON pgant2
2L	3409034	2L_3409034_MNP [dm3] 2L_3409034_MNP [dm6]	TTT	GAC	2.542e^-4	1	INTRON pgant2
3R	2580503	3R_2580503_SNP [dm3] 3R_6754781_SNP [dm6]	A	C	2.545e^-4	1	UPSTREAM zen INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	3906723	3L_3906723_SNP [dm3] 3L_3906723_SNP [dm6]	G	T	2.550e^-4	1	SYNONYMOUS_CODING ida	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21927333	X_21927333_SNP [dm3] X_22525497_SNP [dm6]	A	G	2.562e^-4	1	INTRON CG17600
2R	11060770	2R_11060770_SNP [dm3] 2R_15173265_SNP [dm6]	C	T	2.574e^-4	1	INTRON igl
3L	11041152	3L_11041152_DEL [dm3] 3L_11048052_DEL [dm6]	AA	A	2.585e^-4	1	INTRON CG43693	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl mE1_TFBS_zfh1
2R	7149429	2R_7149429_SNP [dm3] 2R_11261924_SNP [dm6]	T	G	2.595e^-4	1	UPSTREAM Cpr47Ed INTERGENIC
2L	18561957	2L_18561957_SNP [dm3] 2L_18561957_SNP [dm6]	T	A	2.597e^-4	1	INTRON Pde11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	14583359	3L_14583359_INS [dm3] 3L_14590259_INS [dm6]	A	AGGG	2.604e^-4	1	INTRON HGTX
X	12698781	X_12698781_SNP [dm3] X_12804748_SNP [dm6]	G	A	2.621e^-4	1	DOWNSTREAM CG3775 INTRON Pde9
2R	9857170	2R_9857170_SNP [dm3] 2R_13969665_SNP [dm6]	C	A	2.626e^-4	1	DOWNSTREAM St4 INTRON Aats-phe	TF binding site mE1_TFBS_HSA
2R	12089017	2R_12089017_DEL [dm3] 2R_16201512_DEL [dm6]	AA	A	2.627e^-4	1	SPLICE_SITE_REGION shark INTRON shark	TF binding site mE1_TFBS_chinmo
2L	3664704	2L_3664704_SNP [dm3] 2L_3664704_SNP [dm6]	C	T	2.631e^-4	1	INTRON CG34340
X	2448287	X_2448287_SNP [dm3] X_2554254_SNP [dm6]	C	T	2.640e^-4	1	UTR_5_PRIME Pdfr INTRON Pdfr
3R	25760814	3R_25760814_SNP [dm3] 3R_29935092_SNP [dm6]	A	G	2.646e^-4	1	UPSTREAM CG15523 DOWNSTREAM CG42557 & 1 other INTRON eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	767019	3L_767019_SNP [dm3] 3L_767019_SNP [dm6]	G	A	2.655e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10570973	3L_10570973_SNP [dm3] 3L_10577873_SNP [dm6]	A	T	2.656e^-4	1	INTRON A2bp1
X	8294200	X_8294200_SNP [dm3] X_8400167_SNP [dm6]	G	A	2.668e^-4	1	SYNONYMOUS_CODING CG10555	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20946446	3L_20946446_SNP [dm3] 3L_20953346_SNP [dm6]	T	A	2.670e^-4	1	INTERGENIC
2R	19576359	2R_19576359_SNP [dm3] 2R_23688836_SNP [dm6]	T	A	2.674e^-4	1	DOWNSTREAM St3 INTRON Pal2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	16054415	X_16054415_SNP [dm3] X_16160382_SNP [dm6]	C	A	2.682e^-4	1	INTERGENIC
2L	3409037	2L_3409037_DEL [dm3] 2L_3409037_DEL [dm6]	CAGG	C	2.690e^-4	1	INTRON pgant2
2L	11618512	2L_11618512_SNP [dm3] 2L_11618512_SNP [dm6]	T	G	2.696e^-4	1	INTRON kek2
2L	11618518	2L_11618518_INS [dm3] 2L_11618518_INS [dm6]	T	TT	2.696e^-4	1	INTRON kek2
2L	11618527	2L_11618527_SNP [dm3] 2L_11618527_SNP [dm6]	G	T	2.696e^-4	1	INTRON kek2
2L	15634690	2L_15634690_SNP [dm3] 2L_15634690_SNP [dm6]	G	A	2.698e^-4	1	UTR_3_PRIME CG18480
3L	5964800	3L_5964800_SNP [dm3] 3L_5971700_SNP [dm6]	A	T	2.703e^-4	1	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15824248	2R_15824248_SNP [dm3] 2R_19936743_SNP [dm6]	G	A	2.708e^-4	1	INTERGENIC
3L	17455543	3L_17455543_SNP [dm3] 3L_17462443_SNP [dm6]	A	T	2.714e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8268039	2L_8268039_SNP [dm3] 2L_8268039_SNP [dm6]	G	A	2.722e^-4	1	INTRON Btk29A	TF binding site mE1_TFBS_D
3L	754725	3L_754725_SNP [dm3] 3L_754725_SNP [dm6]	A	G	2.728e^-4	1	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	16152890	2R_16152890_SNP [dm3] 2R_20265385_SNP [dm6]	T	C	2.733e^-4	1	SYNONYMOUS_CODING CG8908 UPSTREAM CR43812 DOWNSTREAM RpS18	TF binding site mE1_TFBS_sens
3L	1817451	3L_1817451_SNP [dm3] 3L_1817451_SNP [dm6]	A	C	2.738e^-4	1	INTRON GV1
2R	12175808	2R_12175808_SNP [dm3] 2R_16288303_SNP [dm6]	T	A	2.760e^-4	1	NON_SYNONYMOUS_CODING CG30099 UPSTREAM CG30324 DOWNSTREAM CG9068 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	21382431	3L_21382431_SNP [dm3] 3L_21389331_SNP [dm6]	T	A	2.763e^-4	1	INTRON rgn
3R	1663223	3R_1663223_SNP [dm3] 3R_5837501_SNP [dm6]	C	A	2.765e^-4	1	INTRON CG1208	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3141907	2R_3141907_SNP [dm3] 2R_7254402_SNP [dm6]	T	A	2.767e^-4	1	UPSTREAM CR45280 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	3969566	3R_3969566_SNP [dm3] 3R_8143844_SNP [dm6]	G	A	2.769e^-4	1	INTERGENIC
2R	12801784	2R_12801784_SNP [dm3] 2R_16914279_SNP [dm6]	G	T	2.772e^-4	1	INTERGENIC
X	21917480	X_21917480_INS [dm3] X_22515644_INS [dm6]	A	ACACTGACTGAAAA...	2.778e^-4	1	UPSTREAM CR43962 INTRON CG17600	TF binding site mE1_TFBS_HSA
2R	8610564	2R_8610564_SNP [dm3] 2R_12723059_SNP [dm6]	A	T	2.785e^-4	1	INTRON CG42663
X	10000152	X_10000152_SNP [dm3] X_10106119_SNP [dm6]	T	G	2.786e^-4	1	INTRON RhoU	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7753709	2L_7753709_SNP [dm3] 2L_7753709_SNP [dm6]	A	C	2.787e^-4	1	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
3L	12568908	3L_12568908_SNP [dm3] 3L_12575808_SNP [dm6]	G	A	2.802e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	15284033	3L_15284033_SNP [dm3] 3L_15290933_SNP [dm6]	G	A	2.802e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10547154	3L_10547154_SNP [dm3] 3L_10554054_SNP [dm6]	T	A	2.804e^-4	1	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
2L	18564610	2L_18564610_SNP [dm3] 2L_18564610_SNP [dm6]	G	C	2.809e^-4	1	INTRON Pde11	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	4383533	X_4383533_SNP [dm3] X_4489500_SNP [dm6]	A	C	2.810e^-4	1	INTRON CR32773	TF binding site mE1_TFBS_Kr
2L	12727826	2L_12727826_SNP [dm3] 2L_12727826_SNP [dm6]	T	A	2.811e^-4	1	INTRON MRP
3L	8032117	3L_8032117_SNP [dm3] 3L_8039017_SNP [dm6]	G	A	2.826e^-4	1	INTRON nmo	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10273916	2L_10273916_SNP [dm3] 2L_10273916_SNP [dm6]	T	C	2.833e^-4	1	INTRON Utx
X	21311351	X_21311351_SNP [dm3] X_21440324_SNP [dm6]	G	A	2.833e^-4	1	DOWNSTREAM CG42343 INTRON CG42343
2L	10345235	2L_10345235_SNP [dm3] 2L_10345235_SNP [dm6]	T	G	2.835e^-4	1	INTRON CG5022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4030841	3R_4030841_SNP [dm3] 3R_8205119_SNP [dm6]	T	C	2.840e^-4	1	UPSTREAM CheA84a INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	624758	3L_624758_SNP [dm3] 3L_624758_SNP [dm6]	C	T	2.845e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14440110	3L_14440110_DEL [dm3] 3L_14447010_DEL [dm6]	GG	G	2.851e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	21198751	3L_21198751_DEL [dm3] 3L_21205651_DEL [dm6]	CTAAAGTGAACCCAACC...	C	2.854e^-4	1	UTR_5_PRIME CG10512 INTRON CG10512	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	8910604	3L_8910604_SNP [dm3] 3L_8917504_SNP [dm6]	T	A	2.859e^-4	1	INTRON Tsp66E
2R	17624937	2R_17624937_SNP [dm3] 2R_21737432_SNP [dm6]	A	T	2.860e^-4	1	INTERGENIC
X	9754553	X_9754553_SNP [dm3] X_9860520_SNP [dm6]	A	C	2.868e^-4	1	INTERGENIC
2R	16151986	2R_16151986_SNP [dm3] 2R_20264481_SNP [dm6]	C	T	2.869e^-4	1	UPSTREAM plu & 1 other DOWNSTREAM CR43812 INTRON RpS18	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	6960414	3L_6960414_SNP [dm3] 3L_6967314_SNP [dm6]	G	T	2.876e^-4	1	SYNONYMOUS_CODING CG10064 DOWNSTREAM Mis12	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11096732	3L_11096732_SNP [dm3] 3L_11103632_SNP [dm6]	G	C	2.877e^-4	1	NON_SYNONYMOUS_CODING CG32071 UPSTREAM Elo68alpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10710414	2R_10710414_SNP [dm3] 2R_14822909_SNP [dm6]	A	T	2.880e^-4	1	DOWNSTREAM CR45329 INTERGENIC
2R	7847484	2R_7847484_SNP [dm3] 2R_11959979_SNP [dm6]	G	T	2.887e^-4	1	INTRON CG13188
X	1936588	X_1936588_SNP [dm3] X_2042555_SNP [dm6]	C	T	2.896e^-4	1	UPSTREAM Actn & 1 other DOWNSTREAM CG4325 INTRON CG4313	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_ttk mE1_TFBS_Ubx
3L	18271959	3L_18271959_SNP [dm3] 3L_18278859_SNP [dm6]	T	A	2.896e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	2709477	X_2709477_SNP [dm3] X_2815444_SNP [dm6]	T	G	2.900e^-4	1	INTRON kirre
3R	9781959	3R_9781959_SNP [dm3] 3R_13956237_SNP [dm6]	T	A	2.905e^-4	1	INTERGENIC
3L	10570969	3L_10570969_INS [dm3] 3L_10577869_INS [dm6]	A	TCAT	2.908e^-4	1	INTRON A2bp1
3R	17255973	3R_17255973_SNP [dm3] 3R_21430251_SNP [dm6]	A	G	2.914e^-4	1	INTRON lbl
2R	12801865	2R_12801865_SNP [dm3] 2R_16914360_SNP [dm6]	G	A	2.919e^-4	1	INTERGENIC
X	11200894	X_11200894_INS [dm3] X_11306861_INS [dm6]	A	AT	2.920e^-4	1	INTERGENIC
3R	19558502	3R_19558502_SNP [dm3] 3R_23732780_SNP [dm6]	A	T	2.929e^-4	1	UPSTREAM Hmgcr INTRON Rpn9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	17484449	2L_17484449_SNP [dm3] 2L_17484449_SNP [dm6]	C	T	2.934e^-4	1	UPSTREAM CG5131 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	15156573	X_15156573_INS [dm3] X_15262540_INS [dm6]	T	TTC	2.934e^-4	1	INTERGENIC
3R	13258287	3R_13258287_SNP [dm3] 3R_17432565_SNP [dm6]	G	A	2.960e^-4	1	INTRON CG5873
2L	9998690	2L_9998690_SNP [dm3] 2L_9998690_SNP [dm6]	T	C	2.965e^-4	1	SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21486992	3R_21486992_SNP [dm3] 3R_25661270_SNP [dm6]	G	A	2.974e^-4	1	UTR_5_PRIME Tnks UPSTREAM RASSF8 DOWNSTREAM CR45208	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10014961	2L_10014961_SNP [dm3] 2L_10014961_SNP [dm6]	A	T	2.974e^-4	1	NON_SYNONYMOUS_CODING CG13131
2L	6393808	2L_6393808_SNP [dm3] 2L_6393808_SNP [dm6]	C	T	3.000e^-4	1	INTRON CG42368
3L	876000	3L_876000_SNP [dm3] 3L_876000_SNP [dm6]	G	A	3.003e^-4	1	INTRON CG32479
2R	5909818	2R_5909818_SNP [dm3] 2R_10022313_SNP [dm6]	G	T	3.009e^-4	1	INTRON Pka-R2
X	14759813	X_14759813_SNP [dm3] X_14865780_SNP [dm6]	G	C	3.009e^-4	1	SYNONYMOUS_CODING CG9518 INTRON Flo2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	1395792	2R_1395792_SNP [dm3] 2R_5508287_SNP [dm6]	G	T	3.011e^-4	1	UPSTREAM TpnC4 INTRON CG30438
X	15156587	X_15156587_SNP [dm3] X_15262554_SNP [dm6]	A	G	3.011e^-4	1	INTERGENIC
3L	10905807	3L_10905807_SNP [dm3] 3L_10912707_SNP [dm6]	A	T	3.019e^-4	1	INTERGENIC
3L	11590854	3L_11590854_SNP [dm3] 3L_11597754_SNP [dm6]	G	A	3.020e^-4	1	INTRON CG7368
2R	6489087	2R_6489087_SNP [dm3] 2R_10601582_SNP [dm6]	A	T	3.025e^-4	1	INTRON psq
3L	11671743	3L_11671743_SNP [dm3] 3L_11678643_SNP [dm6]	G	T	3.049e^-4	1	INTRON CG32085
2R	12359635	2R_12359635_SNP [dm3] 2R_16472130_SNP [dm6]	G	A	3.055e^-4	1	INTERGENIC
3L	7840477	3L_7840477_SNP [dm3] 3L_7847377_SNP [dm6]	T	C	3.057e^-4	1	INTRON Pdp1	regulatory region REDfly_CRMs
3R	4276525	3R_4276525_SNP [dm3] 3R_8450803_SNP [dm6]	A	G	3.060e^-4	1	INTRON CG45263
3L	11934457	3L_11934457_SNP [dm3] 3L_11941357_SNP [dm6]	A	T	3.061e^-4	1	UPSTREAM Rpt4R INTERGENIC
2R	20136884	2R_20136884_SNP [dm3] 2R_24249361_SNP [dm6]	C	T	3.068e^-4	1	SYNONYMOUS_CODING Ir60a INTRON nord	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15159776	2L_15159776_SNP [dm3] 2L_15159776_SNP [dm6]	G	C	3.100e^-4	1	UPSTREAM CR44770 EXON CR44771	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16535323	2R_16535323_SNP [dm3] 2R_20647818_SNP [dm6]	T	A	3.113e^-4	1	INTRON Lrt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sbb
3L	3780802	3L_3780802_SNP [dm3] 3L_3780802_SNP [dm6]	G	A	3.116e^-4	1	SYNONYMOUS_CODING CG32264 INTRON CG32264	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26058383	3R_26058383_INS [dm3] 3R_30232661_INS [dm6]	C	CC	3.127e^-4	1	INTERGENIC
2L	17483831	2L_17483831_SNP [dm3] 2L_17483831_SNP [dm6]	C	T	3.145e^-4	1	NON_SYNONYMOUS_CODING CG6453 UPSTREAM CG5131	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17483681	2L_17483681_SNP [dm3] 2L_17483681_SNP [dm6]	T	A	3.148e^-4	1	NON_SYNONYMOUS_CODING CG6453 UPSTREAM CG5131	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9149336	3L_9149336_SNP [dm3] 3L_9156236_SNP [dm6]	C	T	3.148e^-4	1	INTRON Rdl
2R	15321956	2R_15321956_SNP [dm3] 2R_19434451_SNP [dm6]	A	G	3.155e^-4	1	SYNONYMOUS_CODING Fak
2R	12796526	2R_12796526_SNP [dm3] 2R_16909021_SNP [dm6]	G	T	3.159e^-4	1	INTERGENIC
2R	11939144	2R_11939144_SNP [dm3] 2R_16051639_SNP [dm6]	C	A	3.161e^-4	1	INTRON CG8405
2L	4789488	2L_4789488_INS [dm3] 2L_4789488_INS [dm6]	T	TT	3.168e^-4	1	INTRON CG15630
3L	12366407	3L_12366407_SNP [dm3] 3L_12373307_SNP [dm6]	G	A	3.170e^-4	1	INTRON Ncc69
2R	1254205	2R_1254205_DEL [dm3] 2R_5366700_DEL [dm6]	CGACTCAAAAAAAC...	C	3.174e^-4	1	EXON CR42646
2R	17843102	2R_17843102_INS [dm3] 2R_21955597_INS [dm6]	T	TGCATCATCTA...	3.191e^-4	1	UPSTREAM CG13494 INTERGENIC
2R	17444451	2R_17444451_SNP [dm3] 2R_21556946_SNP [dm6]	C	T	3.200e^-4	1	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11330103	2R_11330103_SNP [dm3] 2R_15442598_SNP [dm6]	G	A	3.203e^-4	1	INTRON CG43729
3R	3985729	3R_3985729_SNP [dm3] 3R_8160007_SNP [dm6]	T	G	3.203e^-4	1	INTRON grn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	3093421	2R_3093421_SNP [dm3] 2R_7205916_SNP [dm6]	G	T	3.209e^-4	1	INTRON pk
3R	5478528	3R_5478528_INS [dm3] 3R_9652806_INS [dm6]	A	AGATGTAGGCCAGAA...	3.219e^-4	1	UTR_3_PRIME CG43441 INTRON CG9492	TF binding site BDTNP1_TFBS_da
2R	3130158	2R_3130158_SNP [dm3] 2R_7242653_SNP [dm6]	G	T	3.219e^-4	1	DOWNSTREAM Ady43A INTERGENIC
2R	16251761	2R_16251761_SNP [dm3] 2R_20364256_SNP [dm6]	T	C	3.228e^-4	1	INTERGENIC
X	6113918	X_6113918_SNP [dm3] X_6219885_SNP [dm6]	A	G	3.235e^-4	1	UPSTREAM Efr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	316271	2L_316271_SNP [dm3] 2L_316271_SNP [dm6]	T	C	3.240e^-4	1	INTRON Plc21C
3L	13298839	3L_13298839_SNP [dm3] 3L_13305739_SNP [dm6]	C	T	3.247e^-4	1	INTERGENIC
3R	21649144	3R_21649144_SNP [dm3] 3R_25823422_SNP [dm6]	C	T	3.247e^-4	1	DOWNSTREAM CR44949 INTERGENIC
2L	9884653	2L_9884653_SNP [dm3] 2L_9884653_SNP [dm6]	C	T	3.248e^-4	1	INTRON nAChRalpha6
X	5266266	X_5266266_SNP [dm3] X_5372233_SNP [dm6]	G	T	3.258e^-4	1	INTRON SK
2L	6474195	2L_6474195_INS [dm3] 2L_6474195_INS [dm6]	T	TGAGTT	3.259e^-4	1	UPSTREAM mmy DOWNSTREAM CG9536 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3093194	2R_3093194_SNP [dm3] 2R_7205689_SNP [dm6]	G	A	3.269e^-4	1	INTRON pk	TF binding site mE1_TFBS_cad
3R	15248748	3R_15248748_SNP [dm3] 3R_19423026_SNP [dm6]	A	G	3.273e^-4	1	DOWNSTREAM CG3517 INTRON CG31221
3R	20167499	3R_20167499_SNP [dm3] 3R_24341777_SNP [dm6]	T	A	3.278e^-4	1	UPSTREAM Ms INTRON Ms	TF binding site mE1_TFBS_cad
3R	18457488	3R_18457488_SNP [dm3] 3R_22631766_SNP [dm6]	G	T	3.279e^-4	1	INTRON loco	regulatory region REDfly_CRMs
2R	4273084	2R_4273084_SNP [dm3] 2R_8385579_SNP [dm6]	G	A	3.285e^-4	1	INTRON pdm3
2L	7753641	2L_7753641_SNP [dm3] 2L_7753641_SNP [dm6]	T	A	3.291e^-4	1	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
X	8259898	X_8259898_SNP [dm3] X_8365865_SNP [dm6]	C	T	3.297e^-4	1	INTRON nAChRalpha3
3L	10249624	3L_10249624_SNP [dm3] 3L_10256524_SNP [dm6]	A	G	3.309e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	19112289	2R_19112289_INS [dm3] 2R_23224766_INS [dm6]	A	AA	3.319e^-4	1	INTERGENIC
2R	11796249	2R_11796249_SNP [dm3] 2R_15908744_SNP [dm6]	A	G	3.321e^-4	1	INTRON sli	TF binding site mE1_TFBS_chinmo
2R	12272565	2R_12272565_SNP [dm3] 2R_16385060_SNP [dm6]	G	A	3.327e^-4	1	UTR_3_PRIME CG43187
2R	15321962	2R_15321962_SNP [dm3] 2R_19434457_SNP [dm6]	A	C	3.330e^-4	1	SYNONYMOUS_CODING Fak
3L	15288194	3L_15288194_SNP [dm3] 3L_15295094_SNP [dm6]	T	A	3.338e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10339376	2R_10339376_DEL [dm3] 2R_14451871_DEL [dm6]	AAT	A	3.349e^-4	1	INTRON Oaz	TF binding site mE1_TFBS_chinmo
X	12852114	X_12852114_SNP [dm3] X_12958081_SNP [dm6]	C	T	3.355e^-4	1	UPSTREAM hec INTERGENIC
3L	17143799	3L_17143799_SNP [dm3] 3L_17150699_SNP [dm6]	T	A	3.356e^-4	1	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9273899	3L_9273899_SNP [dm3] 3L_9280799_SNP [dm6]	A	G	3.356e^-4	1	INTRON GluRIB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13001180	X_13001180_MNP [dm3] X_13107147_MNP [dm6]	GAT	ATC	3.359e^-4	1	DOWNSTREAM Fer3HCH INTRON CG43313
3L	15286751	3L_15286751_SNP [dm3] 3L_15293651_SNP [dm6]	C	A	3.362e^-4	1	INTERGENIC
3L	20979448	3L_20979448_SNP [dm3] 3L_20986348_SNP [dm6]	G	T	3.367e^-4	1	INTERGENIC
X	6095716	X_6095716_SNP [dm3] X_6201683_SNP [dm6]	C	T	3.375e^-4	1	INTRON vanin-like
2L	11618529	2L_11618529_SNP [dm3] 2L_11618529_SNP [dm6]	A	T	3.381e^-4	1	INTRON kek2
2R	3147459	2R_3147459_SNP [dm3] 2R_7259954_SNP [dm6]	G	A	3.389e^-4	1	SYNONYMOUS_CODING CG1850	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6981725	2L_6981725_SNP [dm3] 2L_6981725_SNP [dm6]	G	C	3.393e^-4	1	INTRON uif	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	9212436	X_9212436_SNP [dm3] X_9318403_SNP [dm6]	G	A	3.407e^-4	1	SYNONYMOUS_CODING c12.1 UPSTREAM c12.2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	4624795	X_4624795_SNP [dm3] X_4730762_SNP [dm6]	T	C	3.407e^-4	1	INTERGENIC
3L	15018200	3L_15018200_SNP [dm3] 3L_15025100_SNP [dm6]	G	A	3.408e^-4	1	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
X	21940341	X_21940341_SNP [dm3] X_22538505_SNP [dm6]	A	C	3.409e^-4	1	SYNONYMOUS_CODING CG17598 INTRON CG17600	TF binding site mE1_TFBS_chinmo
2R	6438417	2R_6438417_SNP [dm3] 2R_10550912_SNP [dm6]	A	C	3.415e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	5478517	3R_5478517_SNP [dm3] 3R_9652795_SNP [dm6]	C	T	3.417e^-4	1	UTR_3_PRIME CG43441 INTRON CG9492	TF binding site BDTNP1_TFBS_da
X	20223003	X_20223003_SNP [dm3] X_20351976_SNP [dm6]	T	A	3.421e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	876013	3L_876013_SNP [dm3] 3L_876013_SNP [dm6]	T	C	3.421e^-4	1	INTRON CG32479
3R	13250102	3R_13250102_SNP [dm3] 3R_17424380_SNP [dm6]	C	T	3.422e^-4	1	INTERGENIC
2R	17715275	2R_17715275_SNP [dm3] 2R_21827770_SNP [dm6]	A	C	3.430e^-4	1	INTRON CG13492	TF binding site mE1_TFBS_cad
X	1659174	X_1659174_SNP [dm3] X_1765141_SNP [dm6]	C	A	3.460e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	15738915	2R_15738915_SNP [dm3] 2R_19851410_SNP [dm6]	G	C	3.467e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3144412	2R_3144412_SNP [dm3] 2R_7256907_SNP [dm6]	C	G	3.474e^-4	1	DOWNSTREAM CR45280 INTERGENIC
2R	12800588	2R_12800588_SNP [dm3] 2R_16913083_SNP [dm6]	T	C	3.486e^-4	1	INTERGENIC
2R	18448684	2R_18448684_SNP [dm3] 2R_22561179_SNP [dm6]	G	C	3.486e^-4	1	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
3L	8879966	3L_8879966_SNP [dm3] 3L_8886866_SNP [dm6]	A	G	3.489e^-4	1	SYNONYMOUS_CODING dally
X	3210998	X_3210998_SNP [dm3] X_3316965_SNP [dm6]	A	G	3.492e^-4	1	UPSTREAM CG10793 INTRON dnc & 1 other
X	14706514	X_14706514_SNP [dm3] X_14812481_SNP [dm6]	A	G	3.494e^-4	1	INTRON rut
3L	10250042	3L_10250042_SNP [dm3] 3L_10256942_SNP [dm6]	T	C	3.495e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9060285	2L_9060285_SNP [dm3] 2L_9060285_SNP [dm6]	C	G	3.511e^-4	1	INTRON CG31708	TF binding site mE1_TFBS_cad
3L	9521312	3L_9521312_SNP [dm3] 3L_9528212_SNP [dm6]	C	T	3.512e^-4	1	UPSTREAM Or67a INTERGENIC
3R	12187356	3R_12187356_SNP [dm3] 3R_16361634_SNP [dm6]	G	C	3.516e^-4	1	NON_SYNONYMOUS_CODING CG14880	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6489107	2R_6489107_SNP [dm3] 2R_10601602_SNP [dm6]	A	T	3.523e^-4	1	INTRON psq
2L	10118456	2L_10118456_SNP [dm3] 2L_10118456_SNP [dm6]	A	T	3.530e^-4	1	INTRON CG44153 & 1 other	transposable element FlyBase
3R	20496095	3R_20496095_SNP [dm3] 3R_24670373_SNP [dm6]	G	C	3.536e^-4	1	INTRON slo	TF binding site mE1_TFBS_cad
2R	19519700	2R_19519700_SNP [dm3] 2R_23632177_SNP [dm6]	T	C	3.537e^-4	1	UPSTREAM retn INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2R	19059840	2R_19059840_SNP [dm3] 2R_23172317_SNP [dm6]	A	C	3.541e^-4	1	INTRON CG34371	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19177624	2R_19177624_SNP [dm3] 2R_23290101_SNP [dm6]	C	T	3.546e^-4	1	DOWNSTREAM CR44783 INTERGENIC
2R	12034933	2R_12034933_SNP [dm3] 2R_16147428_SNP [dm6]	A	G	3.548e^-4	1	SYNONYMOUS_CODING Ext2	TF binding site mE1_TFBS_sens
2L	10811136	2L_10811136_DEL [dm3] 2L_10811136_DEL [dm6]	GAAAGTGCG	G	3.549e^-4	1	INTRON Nos
X	5306120	X_5306120_SNP [dm3] X_5412087_SNP [dm6]	T	A	3.558e^-4	1	DOWNSTREAM spoon INTERGENIC	TF binding site mE1_TFBS_HSA
X	10079751	X_10079751_INS [dm3] X_10185718_INS [dm6]	G	GTTAACTTAACTTAG...	3.558e^-4	1	INTRON CG43902 & 1 other
2R	10699035	2R_10699035_SNP [dm3] 2R_14811530_SNP [dm6]	T	A	3.560e^-4	1	INTERGENIC
X	8392285	X_8392285_SNP [dm3] X_8498252_SNP [dm6]	T	A	3.563e^-4	1	INTRON CG33181
X	8436279	X_8436279_SNP [dm3] X_8542246_SNP [dm6]	C	T	3.565e^-4	1	INTRON Nrg
3L	12353950	3L_12353950_SNP [dm3] 3L_12360850_SNP [dm6]	T	C	3.575e^-4	1	INTERGENIC
X	8387713	X_8387713_SNP [dm3] X_8493680_SNP [dm6]	G	A	3.578e^-4	1	INTRON CG33181
2R	3169855	2R_3169855_SNP [dm3] 2R_7282350_SNP [dm6]	C	A	3.582e^-4	1	UPSTREAM pwn DOWNSTREAM Incenp INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA
2R	10982525	2R_10982525_SNP [dm3] 2R_15095020_SNP [dm6]	A	G	3.587e^-4	1	INTERGENIC
3L	7579460	3L_7579460_SNP [dm3] 3L_7586360_SNP [dm6]	C	T	3.591e^-4	1	SYNONYMOUS_CODING CG14838
2L	18577721	2L_18577721_SNP [dm3] 2L_18577721_SNP [dm6]	T	A	3.592e^-4	1	INTRON Pde11
2R	14162870	2R_14162870_SNP [dm3] 2R_18275365_SNP [dm6]	C	T	3.593e^-4	1	DOWNSTREAM Ote INTERGENIC	TF binding site mE1_TFBS_cad
X	6116995	X_6116995_SNP [dm3] X_6222962_SNP [dm6]	C	T	3.596e^-4	1	DOWNSTREAM sqh & 1 other INTERGENIC
3R	8879343	3R_8879343_SNP [dm3] 3R_13053621_SNP [dm6]	G	A	3.606e^-4	1	SYNONYMOUS_CODING pic	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	8515516	X_8515516_SNP [dm3] X_8621483_SNP [dm6]	C	T	3.617e^-4	1	INTERGENIC
2L	10069170	2L_10069170_SNP [dm3] 2L_10069170_SNP [dm6]	G	A	3.633e^-4	1	NON_SYNONYMOUS_CODING CG44153	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	2576180	3L_2576180_SNP [dm3] 3L_2576180_SNP [dm6]	A	G	3.639e^-4	1	INTRON msn
3L	4518894	3L_4518894_SNP [dm3] 3L_4518894_SNP [dm6]	A	T	3.640e^-4	1	INTRON Tie
3L	14566312	3L_14566312_SNP [dm3] 3L_14573212_SNP [dm6]	G	A	3.644e^-4	1	INTERGENIC
3R	7711956	3R_7711956_SNP [dm3] 3R_11886234_SNP [dm6]	A	G	3.654e^-4	1	INTRON CG31368 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	7098096	3L_7098096_SNP [dm3] 3L_7104996_SNP [dm6]	G	A	3.659e^-4	1	INTRON form3
3R	21648663	3R_21648663_SNP [dm3] 3R_25822941_SNP [dm6]	A	G	3.660e^-4	1	DOWNSTREAM CR44949 INTERGENIC
X	20423914	X_20423914_SNP [dm3] X_20552887_SNP [dm6]	T	A	3.666e^-4	1	INTRON RunxB
X	20423931	X_20423931_SNP [dm3] X_20552904_SNP [dm6]	T	C	3.666e^-4	1	INTRON RunxB
2L	1114595	2L_1114595_SNP [dm3] 2L_1114595_SNP [dm6]	G	A	3.672e^-4	1	DOWNSTREAM Pino & 1 other INTERGENIC
3R	17253329	3R_17253329_SNP [dm3] 3R_21427607_SNP [dm6]	G	C	3.676e^-4	1	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	4623474	2L_4623474_SNP [dm3] 2L_4623474_SNP [dm6]	G	A	3.678e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	19371743	X_19371743_SNP [dm3] X_19477710_SNP [dm6]	A	T	3.679e^-4	1	SYNONYMOUS_CODING CG32533	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11146463	3L_11146463_SNP [dm3] 3L_11153363_SNP [dm6]	T	A	3.681e^-4	1	INTRON CG32082
2R	3114331	2R_3114331_SNP [dm3] 2R_7226826_SNP [dm6]	T	C	3.683e^-4	1	INTERGENIC
2L	16391722	2L_16391722_SNP [dm3] 2L_16391722_SNP [dm6]	G	T	3.685e^-4	1	INTERGENIC
2L	8369535	2L_8369535_INS [dm3] 2L_8369535_INS [dm6]	C	CC	3.699e^-4	1	UTR_3_PRIME Pp2A-29B UPSTREAM CG17292 DOWNSTREAM CR45341 INTRON Pp2A-29B	TF binding site mE1_TFBS_cad
3L	8828921	3L_8828921_SNP [dm3] 3L_8835821_SNP [dm6]	C	G	3.718e^-4	1	UPSTREAM CG32026 INTRON dally	TF binding site mE1_TFBS_Kr
2L	5167916	2L_5167916_SNP [dm3] 2L_5167916_SNP [dm6]	T	A	3.718e^-4	1	SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	12800530	2R_12800530_SNP [dm3] 2R_16913025_SNP [dm6]	A	T	3.719e^-4	1	INTERGENIC
3L	13208217	3L_13208217_DEL [dm3] 3L_13215117_DEL [dm6]	TAATACGAAAT...	C	3.727e^-4	1	UPSTREAM CR43914 DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	10020737	2L_10020737_SNP [dm3] 2L_10020737_SNP [dm6]	T	C	3.731e^-4	1	INTERGENIC
X	9174231	X_9174231_SNP [dm3] X_9280198_SNP [dm6]	G	A	3.734e^-4	1	SYNONYMOUS_CODING c11.1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	17716326	2R_17716326_SNP [dm3] 2R_21828821_SNP [dm6]	A	G	3.740e^-4	1	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad
X	20774353	X_20774353_SNP [dm3] X_20903326_SNP [dm6]	C	A	3.748e^-4	1	INTRON shakB
3R	16867833	3R_16867833_SNP [dm3] 3R_21042111_SNP [dm6]	C	T	3.769e^-4	1	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6394845	3L_6394845_SNP [dm3] 3L_6401745_SNP [dm6]	C	A	3.770e^-4	1	INTRON CG42747	TF binding site BDTNP1_TFBS_z
2R	19123878	2R_19123878_SNP [dm3] 2R_23236355_SNP [dm6]	T	C	3.773e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23849203	3R_23849203_SNP [dm3] 3R_28023481_SNP [dm6]	G	T	3.778e^-4	1	INTERGENIC
2R	20135773	2R_20135773_SNP [dm3] 2R_24248250_SNP [dm6]	T	A	3.783e^-4	1	DOWNSTREAM Ir60a INTRON nord
X	19665860	X_19665860_SNP [dm3] X_19771827_SNP [dm6]	G	C	3.787e^-4	1	INTRON vfl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11200906	X_11200906_DEL [dm3] X_11306873_DEL [dm6]	TG	T	3.790e^-4	1	INTERGENIC
2L	3402028	2L_3402028_SNP [dm3] 2L_3402028_SNP [dm6]	T	A	3.809e^-4	1	INTERGENIC
3L	7778598	3L_7778598_SNP [dm3] 3L_7785498_SNP [dm6]	C	A	3.812e^-4	1	INTRON CG32369
2L	9048224	2L_9048224_SNP [dm3] 2L_9048224_SNP [dm6]	C	G	3.812e^-4	1	INTERGENIC
3L	15033348	3L_15033348_SNP [dm3] 3L_15040248_SNP [dm6]	C	T	3.828e^-4	1	INTRON Sytbeta	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5613437	3L_5613437_SNP [dm3] 3L_5620337_SNP [dm6]	A	C	3.830e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	8647061	2L_8647061_SNP [dm3] 2L_8647061_SNP [dm6]	A	C	3.832e^-4	1	INTRON Sema-1a
3L	6860365	3L_6860365_SNP [dm3] 3L_6867265_SNP [dm6]	C	A	3.837e^-4	1	UPSTREAM CR45115 INTERGENIC
3L	9512382	3L_9512382_SNP [dm3] 3L_9519282_SNP [dm6]	C	T	3.839e^-4	1	INTRON CG33700
3L	11087403	3L_11087403_SNP [dm3] 3L_11094303_SNP [dm6]	G	T	3.840e^-4	1	NON_SYNONYMOUS_CODING CG6279	TF binding site mE1_TFBS_chinmo
X	5582493	X_5582493_SNP [dm3] X_5688460_SNP [dm6]	A	G	3.844e^-4	1	SPLICE_SITE_REGION CG3160 INTRON CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5582556	X_5582556_SNP [dm3] X_5688523_SNP [dm6]	C	T	3.844e^-4	1	SYNONYMOUS_CODING CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	5581003	X_5581003_SNP [dm3] X_5686970_SNP [dm6]	G	A	3.861e^-4	1	INTRON CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	5582502	X_5582502_SNP [dm3] X_5688469_SNP [dm6]	G	A	3.861e^-4	1	SYNONYMOUS_CODING CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19620978	2R_19620978_DEL [dm3] 2R_23733455_DEL [dm6]	ACA	A	3.872e^-4	1	UTR_3_PRIME Sesn DOWNSTREAM mir-4979 & 1 other	TF binding site mE1_TFBS_zfh1
X	4801072	X_4801072_SNP [dm3] X_4907039_SNP [dm6]	C	T	3.879e^-4	1	NON_SYNONYMOUS_CODING CG6927 DOWNSTREAM CG42594
X	16270572	X_16270572_SNP [dm3] X_16376539_SNP [dm6]	T	A	3.884e^-4	1	INTRON Fur2
3L	14206968	3L_14206968_DEL [dm3] 3L_14213868_DEL [dm6]	AA	A	3.895e^-4	1	INTRON nuf
3L	14206982	3L_14206982_SNP [dm3] 3L_14213882_SNP [dm6]	C	T	3.895e^-4	1	INTRON nuf
2L	15079196	2L_15079196_SNP [dm3] 2L_15079196_SNP [dm6]	T	G	3.907e^-4	1	INTRON CG15270	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8373537	3L_8373537_SNP [dm3] 3L_8380437_SNP [dm6]	C	A	3.918e^-4	1	DOWNSTREAM ImpE1 INTRON ImpE1
2R	17611811	2R_17611811_SNP [dm3] 2R_21724306_SNP [dm6]	C	T	3.929e^-4	1	DOWNSTREAM LBR INTERGENIC
3L	9564440	3L_9564440_DEL [dm3] 3L_9571340_DEL [dm6]	CAAAATGAAA	G	3.935e^-4	1	INTRON CG42673
3L	7101161	3L_7101161_SNP [dm3] 3L_7108061_SNP [dm6]	T	A	3.954e^-4	1	INTRON form3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4417389	3L_4417389_SNP [dm3] 3L_4417389_SNP [dm6]	G	A	3.960e^-4	1	INTRON DOR
3R	18968894	3R_18968894_SNP [dm3] 3R_23143172_SNP [dm6]	G	A	3.962e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13846579	2R_13846579_SNP [dm3] 2R_17959074_SNP [dm6]	A	T	3.962e^-4	1	INTERGENIC
3L	11146863	3L_11146863_SNP [dm3] 3L_11153763_SNP [dm6]	C	T	3.967e^-4	1	INTRON CG32082
X	8573433	X_8573433_SNP [dm3] X_8679400_SNP [dm6]	G	A	3.977e^-4	1	NON_SYNONYMOUS_CODING CG12772	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	15993572	3R_15993572_SNP [dm3] 3R_20167850_SNP [dm6]	A	G	3.990e^-4	1	INTERGENIC
3L	17687066	3L_17687066_SNP [dm3] 3L_17693966_SNP [dm6]	T	G	3.998e^-4	1	INTRON Ccn
2R	3528730	2R_3528730_SNP [dm3] 2R_7641225_SNP [dm6]	C	A	4.007e^-4	1	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340	TF binding site mE1_TFBS_cad
2R	13849974	2R_13849974_SNP [dm3] 2R_17962469_SNP [dm6]	A	C	4.021e^-4	1	INTERGENIC
3L	12517629	3L_12517629_SNP [dm3] 3L_12524529_SNP [dm6]	G	A	4.024e^-4	1	NON_SYNONYMOUS_CODING ver UPSTREAM Gcn5 DOWNSTREAM eIF-2beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	12287807	2L_12287807_SNP [dm3] 2L_12287807_SNP [dm6]	A	C	4.030e^-4	1	SPLICE_SITE_REGION aret UTR_5_PRIME aret INTRON aret
2L	12287826	2L_12287826_SNP [dm3] 2L_12287826_SNP [dm6]	A	T	4.030e^-4	1	INTRON aret
3R	11453606	3R_11453606_SNP [dm3] 3R_15627884_SNP [dm6]	T	C	4.034e^-4	1	INTERGENIC
3L	14460656	3L_14460656_INS [dm3] 3L_14467556_INS [dm6]	G	GCG	4.038e^-4	1	INTRON bbg
2R	6489098	2R_6489098_SNP [dm3] 2R_10601593_SNP [dm6]	A	T	4.043e^-4	1	INTRON psq
2L	12598219	2L_12598219_DEL [dm3] 2L_12598219_DEL [dm6]	CTTAAGT	C	4.048e^-4	1	INTRON nub
2L	12598226	2L_12598226_INS [dm3] 2L_12598226_INS [dm6]	A	AAC	4.048e^-4	1	INTRON nub
3L	17333724	3L_17333724_SNP [dm3] 3L_17340624_SNP [dm6]	A	G	4.058e^-4	1	SYNONYMOUS_CODING CG13727 UPSTREAM tRNA:CR32173	TF binding site mE1_TFBS_cad
2R	14086525	2R_14086525_SNP [dm3] 2R_18199020_SNP [dm6]	A	T	4.066e^-4	1	INTERGENIC
2L	3402027	2L_3402027_SNP [dm3] 2L_3402027_SNP [dm6]	T	G	4.073e^-4	1	INTERGENIC
2R	6734163	2R_6734163_INS [dm3] 2R_10846658_INS [dm6]	T	TT	4.076e^-4	1	INTRON CG30015
2R	3115503	2R_3115503_SNP [dm3] 2R_7227998_SNP [dm6]	G	A	4.077e^-4	1	INTERGENIC
X	906229	X_906229_SNP [dm3] X_1012196_SNP [dm6]	C	A	4.077e^-4	1	NON_SYNONYMOUS_CODING CG14631 UPSTREAM TfIIA-S-2 & 1 other
2R	4011286	2R_4011286_SNP [dm3] 2R_8123781_SNP [dm6]	T	C	4.079e^-4	1	SYNONYMOUS_CODING Nup50 UPSTREAM Asap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	8385816	3L_8385816_SNP [dm3] 3L_8392716_SNP [dm6]	C	T	4.086e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
3L	8385817	3L_8385817_SNP [dm3] 3L_8392717_SNP [dm6]	A	G	4.086e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
3L	8385819	3L_8385819_DEL [dm3] 3L_8392719_DEL [dm6]	TCC	AA	4.086e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
X	19120358	X_19120358_SNP [dm3] X_19226325_SNP [dm6]	A	G	4.102e^-4	1	INTRON CG7884	TF binding site BDTNP1_TFBS_twi
2R	16566342	2R_16566342_SNP [dm3] 2R_20678837_SNP [dm6]	C	T	4.108e^-4	1	INTERGENIC
3L	9541871	3L_9541871_SNP [dm3] 3L_9548771_SNP [dm6]	T	G	4.119e^-4	1	INTRON CG42673
3R	21487713	3R_21487713_SNP [dm3] 3R_25661991_SNP [dm6]	C	A	4.127e^-4	1	UTR_5_PRIME RASSF8 UPSTREAM Tnks EXON CR45208	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	7098088	3L_7098088_SNP [dm3] 3L_7104988_SNP [dm6]	T	A	4.139e^-4	1	INTRON form3
3L	7098090	3L_7098090_SNP [dm3] 3L_7104990_SNP [dm6]	C	T	4.139e^-4	1	INTRON form3
3R	17930072	3R_17930072_SNP [dm3] 3R_22104350_SNP [dm6]	A	G	4.147e^-4	1	INTRON CG5778 & 1 other
2R	16483995	2R_16483995_SNP [dm3] 2R_20596490_SNP [dm6]	A	G	4.147e^-4	1	INTRON bl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	9442864	3L_9442864_SNP [dm3] 3L_9449764_SNP [dm6]	C	T	4.158e^-4	1	SYNONYMOUS_CODING CG3529 DOWNSTREAM CG3448	TF binding site mE1_TFBS_cad
2R	12179910	2R_12179910_SNP [dm3] 2R_16292405_SNP [dm6]	T	G	4.164e^-4	1	NON_SYNONYMOUS_CODING CG7747 UPSTREAM CR43730 DOWNSTREAM CG30100 & 1 other
3L	15479410	3L_15479410_DEL [dm3] 3L_15486310_DEL [dm6]	TAATG	A	4.183e^-4	1	UPSTREAM Ran-like INTERGENIC
3L	15211042	3L_15211042_SNP [dm3] 3L_15217942_SNP [dm6]	A	T	4.185e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	14575245	3L_14575245_SNP [dm3] 3L_14582145_SNP [dm6]	T	C	4.189e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11727178	3L_11727178_SNP [dm3] 3L_11734078_SNP [dm6]	G	C	4.191e^-4	1	UTR_3_PRIME CG6024 DOWNSTREAM CG32087
3R	2813642	3R_2813642_SNP [dm3] 3R_6987920_SNP [dm6]	G	A	4.228e^-4	1	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11939143	2R_11939143_SNP [dm3] 2R_16051638_SNP [dm6]	G	A	4.243e^-4	1	INTRON CG8405
3R	18665671	3R_18665671_SNP [dm3] 3R_22839949_SNP [dm6]	G	A	4.248e^-4	1	INTERGENIC
3R	14373748	3R_14373748_SNP [dm3] 3R_18548026_SNP [dm6]	T	A	4.255e^-4	1	INTERGENIC
3R	15182477	3R_15182477_SNP [dm3] 3R_19356755_SNP [dm6]	C	A	4.264e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	7003945	2R_7003945_INS [dm3] 2R_11116440_INS [dm6]	C	CC	4.268e^-4	1	UPSTREAM luna DOWNSTREAM Cyp12d1-p INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	8827773	3L_8827773_SNP [dm3] 3L_8834673_SNP [dm6]	A	C	4.269e^-4	1	INTRON dally	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	12287832	2L_12287832_SNP [dm3] 2L_12287832_SNP [dm6]	C	A	4.270e^-4	1	INTRON aret
3L	19340828	3L_19340828_SNP [dm3] 3L_19347728_SNP [dm6]	T	C	4.272e^-4	1	INTRON CG32206
3R	20817178	3R_20817178_SNP [dm3] 3R_24991456_SNP [dm6]	G	T	4.281e^-4	1	INTRON tnc
2R	5400715	2R_5400715_SNP [dm3] 2R_9513210_SNP [dm6]	T	G	4.291e^-4	1	INTRON brp
X	10974779	X_10974779_SNP [dm3] X_11080746_SNP [dm6]	T	A	4.298e^-4	1	DOWNSTREAM CR44358 INTRON sev
3L	9920110	3L_9920110_SNP [dm3] 3L_9927010_SNP [dm6]	G	A	4.307e^-4	1	UPSTREAM CG34356 INTRON CG34356
2R	9105931	2R_9105931_DEL [dm3] 2R_13218426_DEL [dm6]	TGTAATTATATTT...	T	4.323e^-4	1	DOWNSTREAM CG4646 INTRON CG4630
2R	6489093	2R_6489093_INS [dm3] 2R_10601588_INS [dm6]	A	AT	4.334e^-4	1	INTRON psq
3R	12187148	3R_12187148_SNP [dm3] 3R_16361426_SNP [dm6]	G	A	4.336e^-4	1	SYNONYMOUS_CODING CG14880	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10570989	3L_10570989_SNP [dm3] 3L_10577889_SNP [dm6]	T	C	4.339e^-4	1	INTRON A2bp1
2R	16538532	2R_16538532_SNP [dm3] 2R_20651027_SNP [dm6]	T	C	4.339e^-4	1	INTRON Lrt	TF binding site BDTNP1_TFBS_twi
3L	2747100	3L_2747100_SNP [dm3] 3L_2747100_SNP [dm6]	G	T	4.341e^-4	1	INTRON Mrtf
2R	1395822	2R_1395822_SNP [dm3] 2R_5508317_SNP [dm6]	T	A	4.343e^-4	1	UPSTREAM TpnC4 INTRON CG30438
X	11200815	X_11200815_DEL [dm3] X_11306782_DEL [dm6]	TTACATTTGAT...	T	4.346e^-4	1	INTERGENIC
3R	7926377	3R_7926377_SNP [dm3] 3R_12100655_SNP [dm6]	T	A	4.354e^-4	1	INTRON dpr17
2R	3135192	2R_3135192_SNP [dm3] 2R_7247687_SNP [dm6]	T	A	4.356e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	4565747	2L_4565747_SNP [dm3] 2L_4565747_SNP [dm6]	C	T	4.359e^-4	1	INTRON dp
3R	4030842	3R_4030842_SNP [dm3] 3R_8205120_SNP [dm6]	A	T	4.361e^-4	1	UPSTREAM CheA84a INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3135172	2R_3135172_SNP [dm3] 2R_7247667_SNP [dm6]	G	C	4.369e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11352779	3L_11352779_SNP [dm3] 3L_11359679_SNP [dm6]	G	T	4.370e^-4	1	INTERGENIC
2L	4207638	2L_4207638_SNP [dm3] 2L_4207638_SNP [dm6]	T	C	4.370e^-4	1	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	11292578	2L_11292578_INS [dm3] 2L_11292578_INS [dm6]	G	GGGTCTTTGG	4.407e^-4	1	INTERGENIC
3L	2363003	3L_2363003_SNP [dm3] 3L_2363003_SNP [dm6]	A	T	4.418e^-4	1	DOWNSTREAM CG13801 INTERGENIC
2R	6438047	2R_6438047_INS [dm3] 2R_10550542_INS [dm6]	T	TC	4.422e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	438206	2L_438206_SNP [dm3] 2L_438206_SNP [dm6]	A	T	4.430e^-4	1	INTRON ex
2R	6152145	2R_6152145_INS [dm3] 2R_10264640_INS [dm6]	A	AAAGTATATGA...	4.437e^-4	1	UPSTREAM CR30009 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	20046615	X_20046615_DEL [dm3] X_20152582_DEL [dm6]	TAGGACC	T	4.439e^-4	1	INTRON CG9572	TF binding site mE1_TFBS_inv
2L	9061279	2L_9061279_SNP [dm3] 2L_9061279_SNP [dm6]	T	A	4.439e^-4	1	INTRON CG31708	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3094921	2R_3094921_SNP [dm3] 2R_7207416_SNP [dm6]	C	G	4.444e^-4	1	INTRON pk	TF binding site mE1_TFBS_chinmo
2R	12796341	2R_12796341_SNP [dm3] 2R_16908836_SNP [dm6]	A	C	4.448e^-4	1	INTERGENIC
2L	5439507	2L_5439507_SNP [dm3] 2L_5439507_SNP [dm6]	G	A	4.453e^-4	1	UPSTREAM CR31647 INTERGENIC
2L	1094690	2L_1094690_SNP [dm3] 2L_1094690_SNP [dm6]	G	A	4.456e^-4	1	INTRON CG4629
3R	16410843	3R_16410843_SNP [dm3] 3R_20585121_SNP [dm6]	G	A	4.461e^-4	1	INTRON CG16953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	5478605	3R_5478605_SNP [dm3] 3R_9652883_SNP [dm6]	A	C	4.464e^-4	1	SYNONYMOUS_CODING CG43441 INTRON CG9492
3L	17303859	3L_17303859_INS [dm3] 3L_17310759_INS [dm6]	A	AA	4.465e^-4	1	INTERGENIC
2L	726677	2L_726677_SNP [dm3] 2L_726677_SNP [dm6]	C	A	4.469e^-4	1	INTERGENIC
3R	12738528	3R_12738528_SNP [dm3] 3R_16912806_SNP [dm6]	T	G	4.487e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
2R	12272554	2R_12272554_SNP [dm3] 2R_16385049_SNP [dm6]	G	C	4.489e^-4	1	UTR_3_PRIME CG43187
2R	12809971	2R_12809971_SNP [dm3] 2R_16922466_SNP [dm6]	C	A	4.491e^-4	1	INTERGENIC
2R	14694332	2R_14694332_SNP [dm3] 2R_18806827_SNP [dm6]	T	C	4.498e^-4	1	INTRON CR44468 EXON CR44468	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10489666	2L_10489666_SNP [dm3] 2L_10489666_SNP [dm6]	T	C	4.502e^-4	1	SYNONYMOUS_CODING CG6144 DOWNSTREAM CG13144	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3091151	2R_3091151_SNP [dm3] 2R_7203646_SNP [dm6]	C	T	4.508e^-4	1	INTRON pk
3R	14373743	3R_14373743_SNP [dm3] 3R_18548021_SNP [dm6]	G	A	4.524e^-4	1	INTERGENIC
X	21311333	X_21311333_SNP [dm3] X_21440306_SNP [dm6]	T	C	4.525e^-4	1	DOWNSTREAM CG42343 INTRON CG42343
3R	25312146	3R_25312146_SNP [dm3] 3R_29486424_SNP [dm6]	C	T	4.548e^-4	1	UTR_3_PRIME Ptp99A DOWNSTREAM CG2321 INTRON CG2321
3R	12187353	3R_12187353_SNP [dm3] 3R_16361631_SNP [dm6]	T	G	4.550e^-4	1	NON_SYNONYMOUS_CODING CG14880	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20798543	3R_20798543_SNP [dm3] 3R_24972821_SNP [dm6]	T	G	4.556e^-4	1	INTERGENIC
3L	10570997	3L_10570997_SNP [dm3] 3L_10577897_SNP [dm6]	G	A	4.559e^-4	1	INTRON A2bp1
3L	11550006	3L_11550006_SNP [dm3] 3L_11556906_SNP [dm6]	A	T	4.578e^-4	1	INTRON Mob2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12530523	3L_12530523_INS [dm3] 3L_12537423_INS [dm6]	T	TATA	4.580e^-4	1	UPSTREAM CG4069 DOWNSTREAM sowah INTERGENIC
2R	15981812	2R_15981812_SNP [dm3] 2R_20094307_SNP [dm6]	G	A	4.588e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9535064	3L_9535064_SNP [dm3] 3L_9541964_SNP [dm6]	C	T	4.591e^-4	1	DOWNSTREAM Ir67a INTERGENIC
3R	27181878	3R_27181878_SNP [dm3] 3R_31356156_SNP [dm6]	C	A	4.609e^-4	1	INTRON CG34347
2R	18021171	2R_18021171_SNP [dm3] 2R_22133666_SNP [dm6]	G	A	4.619e^-4	1	INTERGENIC
2R	17445732	2R_17445732_SNP [dm3] 2R_21558227_SNP [dm6]	G	A	4.621e^-4	1	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	21503214	X_21503214_SNP [dm3] X_21632187_SNP [dm6]	G	C	4.626e^-4	1	DOWNSTREAM CR44712 INTERGENIC
2L	12325115	2L_12325115_SNP [dm3] 2L_12325115_SNP [dm6]	T	C	4.635e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8385498	3L_8385498_SNP [dm3] 3L_8392398_SNP [dm6]	C	T	4.644e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	8385824	3L_8385824_DEL [dm3] 3L_8392724_DEL [dm6]	AAA	C	4.644e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
3L	8385830	3L_8385830_SNP [dm3] 3L_8392730_SNP [dm6]	T	A	4.644e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
3L	8385840	3L_8385840_DEL [dm3] 3L_8392740_DEL [dm6]	TTT	T	4.644e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
3L	3077601	3L_3077601_SNP [dm3] 3L_3077601_SNP [dm6]	C	T	4.648e^-4	1	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3894755	3L_3894755_DEL [dm3] 3L_3894755_DEL [dm6]	CTGTTGACTAGC...	C	4.653e^-4	1	UTR_3_PRIME Fie DOWNSTREAM Gr63a
2R	11945262	2R_11945262_SNP [dm3] 2R_16057757_SNP [dm6]	T	C	4.656e^-4	1	INTRON CG8405	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	6443612	2R_6443612_SNP [dm3] 2R_10556107_SNP [dm6]	A	G	4.658e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	9996788	3L_9996788_SNP [dm3] 3L_10003688_SNP [dm6]	G	T	4.671e^-4	1	START_GAINED dpr6 UTR_5_PRIME dpr6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	2543955	3R_2543955_SNP [dm3] 3R_6718233_SNP [dm6]	A	T	4.671e^-4	1	INTRON pb	regulatory region REDfly_CRMs
3L	18271960	3L_18271960_SNP [dm3] 3L_18278860_SNP [dm6]	C	T	4.678e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	4211933	3L_4211933_SNP [dm3] 3L_4211933_SNP [dm6]	A	G	4.679e^-4	1	UPSTREAM Cpr64Ab DOWNSTREAM Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_cad
2R	18021100	2R_18021100_SNP [dm3] 2R_22133595_SNP [dm6]	T	G	4.682e^-4	1	INTERGENIC
X	12514588	X_12514588_SNP [dm3] X_12620555_SNP [dm6]	A	C	4.692e^-4	1	INTRON CG11085
2R	6821481	2R_6821481_SNP [dm3] 2R_10933976_SNP [dm6]	G	T	4.699e^-4	1	INTERGENIC
X	10813751	X_10813751_SNP [dm3] X_10919718_SNP [dm6]	T	A	4.701e^-4	1	INTRON CG43901
3L	13208196	3L_13208196_DEL [dm3] 3L_13215096_DEL [dm6]	TAGAAAGTCTAGA...	C	4.703e^-4	1	UPSTREAM CR43914 DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	13208233	3L_13208233_SNP [dm3] 3L_13215133_SNP [dm6]	T	A	4.703e^-4	1	UPSTREAM CR43914 DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	13208289	3L_13208289_SNP [dm3] 3L_13215189_SNP [dm6]	A	T	4.703e^-4	1	UPSTREAM CR43914 DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15072806	2L_15072806_SNP [dm3] 2L_15072806_SNP [dm6]	T	C	4.716e^-4	1	SYNONYMOUS_CODING vas DOWNSTREAM vas
2L	1094900	2L_1094900_SNP [dm3] 2L_1094900_SNP [dm6]	C	T	4.722e^-4	1	INTRON CG4629
3L	3942633	3L_3942633_SNP [dm3] 3L_3942633_SNP [dm6]	A	G	4.722e^-4	1	UPSTREAM CG14982 & 1 other INTERGENIC
X	20734893	X_20734893_INS [dm3] X_20863866_INS [dm6]	T	TAGATT	4.742e^-4	1	UPSTREAM CG43193 INTRON shakB
2R	19176402	2R_19176402_SNP [dm3] 2R_23288879_SNP [dm6]	G	A	4.744e^-4	1	INTERGENIC
2R	12183993	2R_12183993_SNP [dm3] 2R_16296488_SNP [dm6]	C	T	4.753e^-4	1	SYNONYMOUS_CODING Atg9 DOWNSTREAM CG43265	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23114422	3R_23114422_SNP [dm3] 3R_27288700_SNP [dm6]	T	C	4.753e^-4	1	UPSTREAM Hmu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	7317413	3R_7317413_SNP [dm3] 3R_11491691_SNP [dm6]	A	C	4.761e^-4	1	INTERGENIC
3L	7087059	3L_7087059_MNP [dm3] 3L_7093959_MNP [dm6]	CTT	ACA	4.768e^-4	1	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13208229	3L_13208229_SNP [dm3] 3L_13215129_SNP [dm6]	G	T	4.769e^-4	1	UPSTREAM CR43914 DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	3210965	X_3210965_SNP [dm3] X_3316932_SNP [dm6]	T	G	4.771e^-4	1	UPSTREAM CG10793 INTRON dnc & 1 other
2R	10713064	2R_10713064_SNP [dm3] 2R_14825559_SNP [dm6]	T	C	4.777e^-4	1	INTERGENIC
X	20416029	X_20416029_SNP [dm3] X_20545002_SNP [dm6]	C	T	4.778e^-4	1	INTRON RunxB
X	19120673	X_19120673_SNP [dm3] X_19226640_SNP [dm6]	C	G	4.796e^-4	1	INTRON CG7884	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8610562	2R_8610562_SNP [dm3] 2R_12723057_SNP [dm6]	T	A	4.800e^-4	1	INTRON CG42663
3L	8891144	3L_8891144_SNP [dm3] 3L_8898044_SNP [dm6]	T	C	4.804e^-4	1	INTRON TrpA1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16482191	2L_16482191_SNP [dm3] 2L_16482191_SNP [dm6]	C	G	4.816e^-4	1	INTRON dac	regulatory region REDfly_CRMs
3R	24757954	3R_24757954_SNP [dm3] 3R_28932232_SNP [dm6]	A	T	4.832e^-4	1	INTRON CG14521
3R	21004056	3R_21004056_SNP [dm3] 3R_25178334_SNP [dm6]	C	A	4.837e^-4	1	INTRON lobo	TF binding site BDTNP1_TFBS_twi
3L	20183064	3L_20183064_SNP [dm3] 3L_20189964_SNP [dm6]	C	T	4.847e^-4	1	DOWNSTREAM Ssk INTRON CG42674
X	21502215	X_21502215_SNP [dm3] X_21631188_SNP [dm6]	G	A	4.848e^-4	1	EXON CR44712	TF binding site BDTNP1_TFBS_dl
2L	15453828	2L_15453828_SNP [dm3] 2L_15453828_SNP [dm6]	C	T	4.857e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
X	2709491	X_2709491_DEL [dm3] X_2815458_DEL [dm6]	TCA	T	4.862e^-4	1	INTRON kirre
X	2709514	X_2709514_SNP [dm3] X_2815481_SNP [dm6]	T	C	4.862e^-4	1	INTRON kirre
2R	7709714	2R_7709714_SNP [dm3] 2R_11822209_SNP [dm6]	T	C	4.865e^-4	1	INTERGENIC
2R	2423747	2R_2423747_SNP [dm3] 2R_6536242_SNP [dm6]	G	C	4.881e^-4	1	INTRON jing
2R	9857158	2R_9857158_SNP [dm3] 2R_13969653_SNP [dm6]	T	A	4.884e^-4	1	DOWNSTREAM St4 INTRON Aats-phe	TF binding site mE1_TFBS_HSA
3L	14915532	3L_14915532_DEL [dm3] 3L_14922432_DEL [dm6]	ATGAATGTTATATAGG...	A	4.888e^-4	1	INTRON DCX-EMAP
2L	5875115	2L_5875115_SNP [dm3] 2L_5875115_SNP [dm6]	C	T	4.888e^-4	1	INTRON rau
3L	7828958	3L_7828958_SNP [dm3] 3L_7835858_SNP [dm6]	G	A	4.900e^-4	1	INTRON Pdp1
2R	6489095	2R_6489095_SNP [dm3] 2R_10601590_SNP [dm6]	C	T	4.914e^-4	1	INTRON psq
3L	7087094	3L_7087094_SNP [dm3] 3L_7093994_SNP [dm6]	T	A	4.922e^-4	1	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	20222186	2R_20222186_SNP [dm3] 2R_24334663_SNP [dm6]	G	T	4.925e^-4	1	UPSTREAM slbo DOWNSTREAM CR44282 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	12272573	2R_12272573_SNP [dm3] 2R_16385068_SNP [dm6]	A	G	4.937e^-4	1	UTR_3_PRIME CG43187
3L	12530526	3L_12530526_DEL [dm3] 3L_12537426_DEL [dm6]	GCTC	G	4.949e^-4	1	UPSTREAM CG4069 DOWNSTREAM sowah INTERGENIC
3R	12187160	3R_12187160_SNP [dm3] 3R_16361438_SNP [dm6]	A	G	4.949e^-4	1	SYNONYMOUS_CODING CG14880	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9634612	2R_9634612_SNP [dm3] 2R_13747107_SNP [dm6]	C	G	4.952e^-4	1	UTR_3_PRIME fas
2R	4167877	2R_4167877_SNP [dm3] 2R_8280372_SNP [dm6]	G	C	4.957e^-4	1	INTERGENIC
3L	14440484	3L_14440484_SNP [dm3] 3L_14447384_SNP [dm6]	C	T	4.957e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	25525191	3R_25525191_SNP [dm3] 3R_29699469_SNP [dm6]	C	T	4.980e^-4	1	INTERGENIC
2R	16691973	2R_16691973_SNP [dm3] 2R_20804468_SNP [dm6]	T	C	4.983e^-4	1	INTERGENIC
2L	18695943	2L_18695943_SNP [dm3] 2L_18695943_SNP [dm6]	C	T	4.986e^-4	1	START_GAINED CG10338 UTR_5_PRIME CG10338 UPSTREAM CG10383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	20167514	3R_20167514_SNP [dm3] 3R_24341792_SNP [dm6]	C	A	4.991e^-4	1	UPSTREAM Ms INTRON Ms	TF binding site mE1_TFBS_cad
2R	3119698	2R_3119698_SNP [dm3] 2R_7232193_SNP [dm6]	A	G	4.999e^-4	1	DOWNSTREAM Or43a INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16793733	2R_16793733_SNP [dm3] 2R_20906228_SNP [dm6]	G	A	5.001e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	3944834	3L_3944834_SNP [dm3] 3L_3944834_SNP [dm6]	A	T	5.004e^-4	1	SYNONYMOUS_CODING CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
3L	5549424	3L_5549424_SNP [dm3] 3L_5556324_SNP [dm6]	G	T	5.005e^-4	1	INTERGENIC
3R	1666152	3R_1666152_SNP [dm3] 3R_5840430_SNP [dm6]	C	A	5.011e^-4	1	UPSTREAM CG1213 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7087112	3L_7087112_SNP [dm3] 3L_7094012_SNP [dm6]	T	C	5.013e^-4	1	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13447335	3L_13447335_INS [dm3] 3L_13454235_INS [dm6]	G	GGAGTCTTG	5.021e^-4	1	INTRON CG10738
3L	8891052	3L_8891052_SNP [dm3] 3L_8897952_SNP [dm6]	G	A	5.024e^-4	1	SYNONYMOUS_CODING TrpA1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8385833	3L_8385833_SNP [dm3] 3L_8392733_SNP [dm6]	T	C	5.028e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
2R	18489963	2R_18489963_SNP [dm3] 2R_22602458_SNP [dm6]	C	G	5.028e^-4	1	NON_SYNONYMOUS_CODING CG4294
2L	16205797	2L_16205797_SNP [dm3] 2L_16205797_SNP [dm6]	G	A	5.045e^-4	1	INTERGENIC
3L	13778987	3L_13778987_SNP [dm3] 3L_13785887_SNP [dm6]	C	T	5.051e^-4	1	INTRON bru-3
2R	3616409	2R_3616409_SNP [dm3] 2R_7728904_SNP [dm6]	A	G	5.051e^-4	1	NON_SYNONYMOUS_CODING CG18812
X	8392279	X_8392279_SNP [dm3] X_8498246_SNP [dm6]	T	A	5.052e^-4	1	INTRON CG33181
2R	6244285	2R_6244285_SNP [dm3] 2R_10356780_SNP [dm6]	G	A	5.054e^-4	1	UTR_5_PRIME CG42733 UPSTREAM CG12902 & 1 other INTRON CG42732
2R	11912953	2R_11912953_SNP [dm3] 2R_16025448_SNP [dm6]	T	G	5.054e^-4	1	SYNONYMOUS_CODING casp DOWNSTREAM CG8399
3R	18331559	3R_18331559_SNP [dm3] 3R_22505837_SNP [dm6]	T	G	5.060e^-4	1	INTRON Octbeta1R
X	21917446	X_21917446_SNP [dm3] X_22515610_SNP [dm6]	A	G	5.063e^-4	1	UPSTREAM CR43962 INTRON CG17600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3969554	3R_3969554_SNP [dm3] 3R_8143832_SNP [dm6]	T	G	5.068e^-4	1	INTERGENIC
X	5844525	X_5844525_SNP [dm3] X_5950492_SNP [dm6]	T	A	5.072e^-4	1	SYNONYMOUS_CODING CG32755 DOWNSTREAM CG6041	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12359594	2R_12359594_SNP [dm3] 2R_16472089_SNP [dm6]	A	G	5.073e^-4	1	INTERGENIC
2R	12806175	2R_12806175_SNP [dm3] 2R_16918670_SNP [dm6]	C	A	5.082e^-4	1	INTERGENIC
2L	3194320	2L_3194320_SNP [dm3] 2L_3194320_SNP [dm6]	A	G	5.090e^-4	1	INTRON CG34393
2L	9211354	2L_9211354_INS [dm3] 2L_9211354_INS [dm6]	C	CTATTAAGTAACAATTAAA...	5.091e^-4	1	INTRON tai
3L	20938462	3L_20938462_SNP [dm3] 3L_20945362_SNP [dm6]	G	T	5.105e^-4	1	INTRON fng	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3609420	2R_3609420_SNP [dm3] 2R_7721915_SNP [dm6]	C	T	5.110e^-4	1	INTRON CG18812
2R	6821480	2R_6821480_SNP [dm3] 2R_10933975_SNP [dm6]	G	C	5.133e^-4	1	INTERGENIC
3L	16757083	3L_16757083_DEL [dm3] 3L_16763983_DEL [dm6]	CC	C	5.135e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	3144927	2R_3144927_SNP [dm3] 2R_7257422_SNP [dm6]	G	A	5.140e^-4	1	DOWNSTREAM CR45280 INTERGENIC
3R	18968770	3R_18968770_SNP [dm3] 3R_23143048_SNP [dm6]	G	C	5.140e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	20995332	X_20995332_SNP [dm3] X_21124305_SNP [dm6]	A	G	5.145e^-4	1	INTRON CG34120	TF binding site BDTNP1_TFBS_dl
3L	8385793	3L_8385793_SNP [dm3] 3L_8392693_SNP [dm6]	C	A	5.146e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
2L	12054324	2L_12054324_SNP [dm3] 2L_12054324_SNP [dm6]	G	A	5.147e^-4	1	SYNONYMOUS_CODING JhI-21
2R	7056050	2R_7056050_SNP [dm3] 2R_11168545_SNP [dm6]	A	T	5.147e^-4	1	INTRON shn & 1 other
2R	3140670	2R_3140670_SNP [dm3] 2R_7253165_SNP [dm6]	G	A	5.149e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1114304	2L_1114304_INS [dm3] 2L_1114304_INS [dm6]	C	CC	5.150e^-4	1	DOWNSTREAM Pino & 1 other INTERGENIC
3L	4180990	3L_4180990_SNP [dm3] 3L_4180990_SNP [dm6]	C	A	5.153e^-4	1	INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16211736	2R_16211736_SNP [dm3] 2R_20324231_SNP [dm6]	G	T	5.179e^-4	1	SPLICE_SITE_REGION CG8920 INTRON CG8920
2R	17717454	2R_17717454_SNP [dm3] 2R_21829949_SNP [dm6]	A	C	5.181e^-4	1	NON_SYNONYMOUS_CODING CG13492
2L	9211353	2L_9211353_SNP [dm3] 2L_9211353_SNP [dm6]	A	T	5.181e^-4	1	INTRON tai
2R	11733552	2R_11733552_SNP [dm3] 2R_15846047_SNP [dm6]	G	A	5.183e^-4	1	NON_SYNONYMOUS_CODING CG8249 INTRON tun	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21487099	3R_21487099_SNP [dm3] 3R_25661377_SNP [dm6]	C	A	5.184e^-4	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3431249	2R_3431249_INS [dm3] 2R_7543744_INS [dm6]	C	GGCGCTCT	5.188e^-4	1	INTRON Corin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11087458	3L_11087458_SNP [dm3] 3L_11094358_SNP [dm6]	T	C	5.198e^-4	1	SPLICE_SITE_REGION CG6279 UTR_5_PRIME CG6279 INTRON CG6279	TF binding site mE1_TFBS_chinmo
2R	12804874	2R_12804874_SNP [dm3] 2R_16917369_SNP [dm6]	C	A	5.203e^-4	1	INTERGENIC	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3L	1529594	3L_1529594_SNP [dm3] 3L_1529594_SNP [dm6]	T	G	5.218e^-4	1	SYNONYMOUS_CODING Ir62a INTRON CG12090
3L	14540902	3L_14540902_SNP [dm3] 3L_14547802_SNP [dm6]	T	C	5.224e^-4	1	INTRON CG9238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2846324	2L_2846324_SNP [dm3] 2L_2846324_SNP [dm6]	A	G	5.236e^-4	1	SYNONYMOUS_CODING CG3117 UPSTREAM CG18557
3L	13884155	3L_13884155_SNP [dm3] 3L_13891055_SNP [dm6]	T	A	5.237e^-4	1	INTRON dysc
3L	14538852	3L_14538852_SNP [dm3] 3L_14545752_SNP [dm6]	G	A	5.245e^-4	1	INTRON CG9238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	21487579	3R_21487579_SNP [dm3] 3R_25661857_SNP [dm6]	A	T	5.257e^-4	1	UTR_5_PRIME RASSF8 UPSTREAM Tnks EXON CR45208	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	8444605	X_8444605_DEL [dm3] X_8550572_DEL [dm6]	AA	A	5.260e^-4	1	UTR_3_PRIME Nrg DOWNSTREAM Nrg INTRON Nrg	TF binding site BDTNP1_TFBS_dl
3R	4020139	3R_4020139_SNP [dm3] 3R_8194417_SNP [dm6]	G	T	5.260e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	3456886	2L_3456886_SNP [dm3] 2L_3456886_SNP [dm6]	G	A	5.263e^-4	1	SYNONYMOUS_CODING Cog3 UPSTREAM Sec5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	15322942	2R_15322942_SNP [dm3] 2R_19435437_SNP [dm6]	C	G	5.264e^-4	1	SYNONYMOUS_CODING Fak
3L	8373696	3L_8373696_SNP [dm3] 3L_8380596_SNP [dm6]	G	T	5.264e^-4	1	DOWNSTREAM ImpE1 INTRON ImpE1
2L	8369219	2L_8369219_SNP [dm3] 2L_8369219_SNP [dm6]	A	G	5.272e^-4	1	SPLICE_SITE_REGION Pp2A-29B INTRON Pp2A-29B	TF binding site mE1_TFBS_cad
3L	18571002	3L_18571002_SNP [dm3] 3L_18577902_SNP [dm6]	T	A	5.278e^-4	1	INTERGENIC
3R	8526595	3R_8526595_SNP [dm3] 3R_12700873_SNP [dm6]	G	A	5.282e^-4	1	INTRON Past1
2R	8610599	2R_8610599_DEL [dm3] 2R_12723094_DEL [dm6]	GTTGTT	G	5.285e^-4	1	INTRON CG42663
3L	14460472	3L_14460472_SNP [dm3] 3L_14467372_SNP [dm6]	A	T	5.286e^-4	1	INTRON bbg
2R	9650806	2R_9650806_DEL [dm3] 2R_13763301_DEL [dm6]	ACATACACACACA...	A	5.287e^-4	1	INTERGENIC
3L	9541907	3L_9541907_SNP [dm3] 3L_9548807_SNP [dm6]	C	T	5.290e^-4	1	INTRON CG42673
2R	9856702	2R_9856702_SNP [dm3] 2R_13969197_SNP [dm6]	C	T	5.291e^-4	1	SYNONYMOUS_CODING Aats-phe DOWNSTREAM St4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15182532	3R_15182532_SNP [dm3] 3R_19356810_SNP [dm6]	G	A	5.319e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	11007586	3L_11007586_SNP [dm3] 3L_11014486_SNP [dm6]	A	T	5.329e^-4	1	INTERGENIC
X	22291135	X_22291135_SNP [dm3] X_22889299_SNP [dm6]	C	T	5.329e^-4	1	INTERGENIC	transposable element FlyBase
3L	3982262	3L_3982262_SNP [dm3] 3L_3982262_SNP [dm6]	A	T	5.332e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	3138677	2R_3138677_SNP [dm3] 2R_7251172_SNP [dm6]	A	T	5.340e^-4	1	DOWNSTREAM Gadd45 INTERGENIC
2R	19126884	2R_19126884_SNP [dm3] 2R_23239361_SNP [dm6]	C	T	5.348e^-4	1	INTERGENIC
3R	18459877	3R_18459877_SNP [dm3] 3R_22634155_SNP [dm6]	T	C	5.358e^-4	1	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12813545	2R_12813545_SNP [dm3] 2R_16926040_SNP [dm6]	C	A	5.367e^-4	1	INTRON Pkc53E
2R	16265606	2R_16265606_SNP [dm3] 2R_20378101_SNP [dm6]	C	A	5.367e^-4	1	INTERGENIC
3L	1591628	3L_1591628_SNP [dm3] 3L_1591628_SNP [dm6]	G	A	5.375e^-4	1	INTRON CG13917
3L	17157977	3L_17157977_INS [dm3] 3L_17164877_INS [dm6]	A	ACATA	5.380e^-4	1	INTRON Rbp6
3L	11352789	3L_11352789_SNP [dm3] 3L_11359689_SNP [dm6]	A	T	5.391e^-4	1	INTERGENIC
3R	17004113	3R_17004113_SNP [dm3] 3R_21178391_SNP [dm6]	G	A	5.393e^-4	1	SYNONYMOUS_CODING SNF4Agamma	TF binding site mE1_TFBS_chinmo
3R	2846999	3R_2846999_SNP [dm3] 3R_7021277_SNP [dm6]	C	T	5.401e^-4	1	INTERGENIC
3L	17123849	3L_17123849_SNP [dm3] 3L_17130749_SNP [dm6]	T	C	5.401e^-4	1	INTRON Rbp6
3L	8385885	3L_8385885_SNP [dm3] 3L_8392785_SNP [dm6]	G	T	5.407e^-4	1	DOWNSTREAM Jon66Cii & 1 other INTERGENIC
2R	19709480	2R_19709480_INS [dm3] 2R_23821957_INS [dm6]	C	CTCAGTATTTATACCCGAAT...	5.413e^-4	1	INTRON CG5549	TF binding site mE1_TFBS_chinmo
3L	9521433	3L_9521433_SNP [dm3] 3L_9528333_SNP [dm6]	G	T	5.422e^-4	1	UPSTREAM Or67a INTERGENIC
3L	20968076	3L_20968076_SNP [dm3] 3L_20974976_SNP [dm6]	T	C	5.431e^-4	1	UPSTREAM CG33286 INTERGENIC
2L	20068333	2L_20068333_SNP [dm3] 2L_20068333_SNP [dm6]	T	A	5.433e^-4	1	DOWNSTREAM CR44907 INTRON bwa
3L	18356917	3L_18356917_SNP [dm3] 3L_18363817_SNP [dm6]	G	C	5.434e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16482467	2R_16482467_SNP [dm3] 2R_20594962_SNP [dm6]	C	G	5.447e^-4	1	INTRON bl
3L	20917090	3L_20917090_SNP [dm3] 3L_20923990_SNP [dm6]	A	C	5.449e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
X	11307820	X_11307820_SNP [dm3] X_11413787_SNP [dm6]	G	T	5.453e^-4	1	UPSTREAM Gr10b INTRON Gr10a
X	12836430	X_12836430_INS [dm3] X_12942397_INS [dm6]	T	TAAACTTAACA...	5.459e^-4	1	UTR_5_PRIME fne
3L	4417400	3L_4417400_SNP [dm3] 3L_4417400_SNP [dm6]	A	T	5.460e^-4	1	INTRON DOR
2R	17408862	2R_17408862_SNP [dm3] 2R_21521357_SNP [dm6]	T	A	5.466e^-4	1	NON_SYNONYMOUS_CODING CG30289 UPSTREAM CG30288	TF binding site BDTNP1_TFBS_dl
3L	7169940	3L_7169940_SNP [dm3] 3L_7176840_SNP [dm6]	T	C	5.490e^-4	1	INTRON Dscam2
3R	17261277	3R_17261277_SNP [dm3] 3R_21435555_SNP [dm6]	G	C	5.500e^-4	1	DOWNSTREAM CR44089 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	5813760	2L_5813760_SNP [dm3] 2L_5813760_SNP [dm6]	C	T	5.506e^-4	1	INTERGENIC
3L	2692438	3L_2692438_SNP [dm3] 3L_2692438_SNP [dm6]	T	C	5.509e^-4	1	INTRON Fife
3L	4914577	3L_4914577_SNP [dm3] 3L_4914577_SNP [dm6]	G	C	5.539e^-4	1	INTRON Rh50
X	7449732	X_7449732_SNP [dm3] X_7555699_SNP [dm6]	A	T	5.549e^-4	1	UPSTREAM CR44501 INTERGENIC	TF binding site mE1_TFBS_sens
3L	14712281	3L_14712281_SNP [dm3] 3L_14719181_SNP [dm6]	A	G	5.558e^-4	1	INTRON ome
X	5266421	X_5266421_SNP [dm3] X_5372388_SNP [dm6]	C	G	5.574e^-4	1	INTRON SK
3L	11307429	3L_11307429_SNP [dm3] 3L_11314329_SNP [dm6]	T	A	5.575e^-4	1	UPSTREAM CR44361 DOWNSTREAM CG7573 INTERGENIC
2L	22062746	2L_22062746_SNP [dm3] 2L_22062746_SNP [dm6]	C	T	5.587e^-4	1	INTERGENIC	transposable element FlyBase
3R	7115147	3R_7115147_SNP [dm3] 3R_11289425_SNP [dm6]	T	G	5.591e^-4	1	INTRON CR31386
3L	20097755	3L_20097755_SNP [dm3] 3L_20104655_SNP [dm6]	T	C	5.595e^-4	1	UPSTREAM CG14186 EXON CR44679	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Trl
3R	3125187	3R_3125187_SNP [dm3] 3R_7299465_SNP [dm6]	A	C	5.604e^-4	1	INTRON rn
3R	26123095	3R_26123095_SNP [dm3] 3R_30297373_SNP [dm6]	A	T	5.610e^-4	1	INTRON hdc	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17628294	X_17628294_INS [dm3] X_17734261_INS [dm6]	C	CC	5.630e^-4	1	INTRON CG42684	TF binding site BDTNP1_TFBS_dl
X	17628305	X_17628305_SNP [dm3] X_17734272_SNP [dm6]	T	G	5.630e^-4	1	INTRON CG42684	TF binding site BDTNP1_TFBS_dl
X	9803576	X_9803576_SNP [dm3] X_9909543_SNP [dm6]	G	T	5.657e^-4	1	SYNONYMOUS_CODING CG1986
2R	10785398	2R_10785398_SNP [dm3] 2R_14897893_SNP [dm6]	T	C	5.660e^-4	1	UPSTREAM Cyp317a1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	20798212	3R_20798212_SNP [dm3] 3R_24972490_SNP [dm6]	C	T	5.661e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11337248	3L_11337248_SNP [dm3] 3L_11344148_SNP [dm6]	G	C	5.679e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA
3R	10819315	3R_10819315_SNP [dm3] 3R_14993593_SNP [dm6]	A	G	5.701e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Stat92E
3L	3982261	3L_3982261_SNP [dm3] 3L_3982261_SNP [dm6]	A	T	5.712e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	9537715	3L_9537715_DEL [dm3] 3L_9544615_DEL [dm6]	CA	C	5.728e^-4	1	UPSTREAM Ir67a INTERGENIC
3L	8384927	3L_8384927_SNP [dm3] 3L_8391827_SNP [dm6]	A	C	5.729e^-4	1	SYNONYMOUS_CODING Jon66Ci DOWNSTREAM ImpE1 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	14611612	X_14611612_SNP [dm3] X_14717579_SNP [dm6]	A	G	5.734e^-4	1	DOWNSTREAM hog INTRON NetB
3L	14440099	3L_14440099_SNP [dm3] 3L_14446999_SNP [dm6]	A	G	5.743e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	12183578	3L_12183578_SNP [dm3] 3L_12190478_SNP [dm6]	G	A	5.762e^-4	1	SYNONYMOUS_CODING Est-6 UPSTREAM Est-P	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12530532	3L_12530532_INS [dm3] 3L_12537432_INS [dm6]	A	ATATAAT	5.780e^-4	1	UPSTREAM CG4069 DOWNSTREAM sowah INTERGENIC
2R	10697798	2R_10697798_SNP [dm3] 2R_14810293_SNP [dm6]	A	G	5.782e^-4	1	DOWNSTREAM hui INTERGENIC
2R	19136593	2R_19136593_DEL [dm3] 2R_23249070_DEL [dm6]	GAAGTCA	T	5.785e^-4	1	INTERGENIC
3L	4895850	3L_4895850_SNP [dm3] 3L_4895850_SNP [dm6]	A	T	5.799e^-4	1	DOWNSTREAM CG17150 INTERGENIC
3R	7367029	3R_7367029_SNP [dm3] 3R_11541307_SNP [dm6]	G	A	5.801e^-4	1	INTRON dpr4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18282100	2R_18282100_SNP [dm3] 2R_22394595_SNP [dm6]	G	A	5.804e^-4	1	DOWNSTREAM CG13506 INTRON babos
3R	5151452	3R_5151452_SNP [dm3] 3R_9325730_SNP [dm6]	G	T	5.805e^-4	1	INTRON CG8861
3L	12057996	3L_12057996_SNP [dm3] 3L_12064896_SNP [dm6]	C	T	5.807e^-4	1	UPSTREAM rols INTERGENIC
2R	7563711	2R_7563711_INS [dm3] 2R_11676206_INS [dm6]	T	TCCTATT	5.809e^-4	1	SPLICE_SITE_REGION Tret1-2 INTRON Roc2 & 1 other	TF binding site mE1_TFBS_cad
2R	18798021	2R_18798021_SNP [dm3] 2R_22910498_SNP [dm6]	A	G	5.811e^-4	1	INTRON nahoda
2R	17717519	2R_17717519_SNP [dm3] 2R_21830014_SNP [dm6]	T	C	5.812e^-4	1	INTRON CG13492
X	20990098	X_20990098_SNP [dm3] X_21119071_SNP [dm6]	C	T	5.815e^-4	1	SYNONYMOUS_CODING CG15445 DOWNSTREAM CR44374	TF binding site mE1_TFBS_cad
X	3904226	X_3904226_SNP [dm3] X_4010193_SNP [dm6]	T	G	5.823e^-4	1	INTERGENIC
2R	2443956	2R_2443956_SNP [dm3] 2R_6556451_SNP [dm6]	C	T	5.824e^-4	1	INTRON jing
X	5580317	X_5580317_SNP [dm3] X_5686284_SNP [dm6]	G	A	5.840e^-4	1	INTRON CG3160
2L	5435464	2L_5435464_SNP [dm3] 2L_5435464_SNP [dm6]	T	A	5.840e^-4	1	DOWNSTREAM CR31647 INTERGENIC
3R	15182478	3R_15182478_SNP [dm3] 3R_19356756_SNP [dm6]	C	A	5.849e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	11486426	3R_11486426_SNP [dm3] 3R_15660704_SNP [dm6]	C	T	5.860e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21472406	X_21472406_SNP [dm3] X_21601379_SNP [dm6]	A	T	5.860e^-4	1	NON_SYNONYMOUS_CODING CG14476	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6136787	X_6136787_SNP [dm3] X_6242754_SNP [dm6]	A	G	5.862e^-4	1	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21487273	3R_21487273_SNP [dm3] 3R_25661551_SNP [dm6]	C	T	5.862e^-4	1	UPSTREAM RASSF8 & 1 other DOWNSTREAM CR45208 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10933001	3L_10933001_SNP [dm3] 3L_10939901_SNP [dm6]	C	T	5.865e^-4	1	INTERGENIC
2L	3969235	2L_3969235_SNP [dm3] 2L_3969235_SNP [dm6]	G	A	5.866e^-4	1	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	5440611	3R_5440611_SNP [dm3] 3R_9614889_SNP [dm6]	A	G	5.866e^-4	1	INTRON CG8312
3L	14583336	3L_14583336_SNP [dm3] 3L_14590236_SNP [dm6]	T	A	5.870e^-4	1	INTRON HGTX
2R	19519726	2R_19519726_SNP [dm3] 2R_23632203_SNP [dm6]	C	T	5.871e^-4	1	UPSTREAM retn INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2L	2049430	2L_2049430_SNP [dm3] 2L_2049430_SNP [dm6]	C	T	5.877e^-4	1	INTERGENIC
3L	14893170	3L_14893170_SNP [dm3] 3L_14900070_SNP [dm6]	C	T	5.881e^-4	1	INTERGENIC
3L	17139304	3L_17139304_SNP [dm3] 3L_17146204_SNP [dm6]	A	G	5.885e^-4	1	INTRON Rbp6	TF binding site mE1_TFBS_cad
3L	16183821	3L_16183821_SNP [dm3] 3L_16190721_SNP [dm6]	A	C	5.886e^-4	1	INTERGENIC
2R	6489096	2R_6489096_SNP [dm3] 2R_10601591_SNP [dm6]	G	A	5.892e^-4	1	INTRON psq
3L	16216372	3L_16216372_SNP [dm3] 3L_16223272_SNP [dm6]	G	T	5.908e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	4001401	2L_4001401_SNP [dm3] 2L_4001401_SNP [dm6]	T	C	5.911e^-4	1	DOWNSTREAM CG43797 EXON CR45344	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	17303855	3L_17303855_SNP [dm3] 3L_17310755_SNP [dm6]	T	A	5.915e^-4	1	INTERGENIC
3R	7115294	3R_7115294_SNP [dm3] 3R_11289572_SNP [dm6]	T	C	5.919e^-4	1	INTRON CR31386
2R	13561172	2R_13561172_SNP [dm3] 2R_17673667_SNP [dm6]	C	A	5.932e^-4	1	UTR_3_PRIME Sema-1b
X	14806200	X_14806200_SNP [dm3] X_14912167_SNP [dm6]	G	A	5.937e^-4	1	SYNONYMOUS_CODING CG12398 INTRON Flo2
3L	5613426	3L_5613426_SNP [dm3] 3L_5620326_SNP [dm6]	T	A	5.940e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	13778968	3L_13778968_SNP [dm3] 3L_13785868_SNP [dm6]	A	G	5.942e^-4	1	INTRON bru-3
3L	15283931	3L_15283931_SNP [dm3] 3L_15290831_SNP [dm6]	C	T	5.951e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3R	18871022	3R_18871022_SNP [dm3] 3R_23045300_SNP [dm6]	C	T	5.954e^-4	1	SYNONYMOUS_CODING CG17121 DOWNSTREAM CG13837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21040101	3R_21040101_SNP [dm3] 3R_25214379_SNP [dm6]	T	C	5.956e^-4	1	UTR_3_PRIME CG13663 DOWNSTREAM CG13654	TF binding site mE1_TFBS_HSA
X	20990276	X_20990276_SNP [dm3] X_21119249_SNP [dm6]	T	C	5.958e^-4	1	SYNONYMOUS_CODING CG15445 DOWNSTREAM CR44374
3L	14915254	3L_14915254_DEL [dm3] 3L_14922154_DEL [dm6]	ATATTTCGAATTTCCATAAA...	A	5.961e^-4	1	INTRON DCX-EMAP
2L	8649160	2L_8649160_SNP [dm3] 2L_8649160_SNP [dm6]	A	G	5.970e^-4	1	INTRON Sema-1a
2R	3162145	2R_3162145_SNP [dm3] 2R_7274640_SNP [dm6]	G	T	5.972e^-4	1	SYNONYMOUS_CODING Br140	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8291487	X_8291487_SNP [dm3] X_8397454_SNP [dm6]	T	A	5.984e^-4	1	UTR_3_PRIME CG15345
X	17264164	X_17264164_SNP [dm3] X_17370131_SNP [dm6]	G	T	5.992e^-4	1	INTERGENIC
2L	10379497	2L_10379497_SNP [dm3] 2L_10379497_SNP [dm6]	T	A	6.005e^-4	1	UTR_3_PRIME dpr19 UPSTREAM gny	TF binding site BDTNP1_TFBS_Med
3R	16917458	3R_16917458_SNP [dm3] 3R_21091736_SNP [dm6]	C	T	6.007e^-4	1	INTRON RhoGAP93B & 1 other
2R	12134693	2R_12134693_SNP [dm3] 2R_16247188_SNP [dm6]	T	A	6.010e^-4	1	INTRON CngA
2R	3140225	2R_3140225_SNP [dm3] 2R_7252720_SNP [dm6]	C	T	6.014e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5081107	3L_5081107_SNP [dm3] 3L_5081107_SNP [dm6]	T	G	6.017e^-4	1	INTERGENIC
2L	13665082	2L_13665082_SNP [dm3] 2L_13665082_SNP [dm6]	T	C	6.019e^-4	1	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	5582466	X_5582466_SNP [dm3] X_5688433_SNP [dm6]	A	G	6.025e^-4	1	INTRON CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6867170	2L_6867170_SNP [dm3] 2L_6867170_SNP [dm6]	C	A	6.035e^-4	1	INTRON Nha1

By genomic position
Variant impact
Gene name

mn_RespAcetophen_3_5 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results