DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.482e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.006675

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	5.717	0.0574

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2508 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	17748320	2L_17748320_SNP [dm3] 2L_17748320_SNP [dm6]	A	G	8.056e^-7	0.656	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17547868	2L_17547868_SNP [dm3] 2L_17547868_SNP [dm6]	A	C	1.754e^-6	0.656	DOWNSTREAM CR45697 INTERGENIC
3L	10452018	3L_10452018_SNP [dm3] 3L_10458918_SNP [dm6]	G	A	1.880e^-6	0.656	DOWNSTREAM Gem3 INTERGENIC
2R	15562397	2R_15562397_SNP [dm3] 2R_19674892_SNP [dm6]	C	T	2.184e^-6	0.656	INTERGENIC
2L	17547880	2L_17547880_SNP [dm3] 2L_17547880_SNP [dm6]	A	C	2.770e^-6	0.656	DOWNSTREAM CR45697 INTERGENIC
2L	10044917	2L_10044917_SNP [dm3] 2L_10044917_SNP [dm6]	A	T	3.833e^-6	0.656	INTERGENIC
2R	10319176	2R_10319176_SNP [dm3] 2R_14431671_SNP [dm6]	C	A	4.577e^-6	0.656	INTRON phyl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
2L	1334255	2L_1334255_SNP [dm3] 2L_1334255_SNP [dm6]	A	T	5.180e^-6	0.656	UTR_5_PRIME CG5440
2R	20505538	2R_20505538_SNP [dm3] 2R_24618015_SNP [dm6]	A	T	5.385e^-6	0.656	INTRON CG13594	TF binding site mE1_TFBS_chinmo
3L	3399671	3L_3399671_SNP [dm3] 3L_3399671_SNP [dm6]	C	T	5.502e^-6	0.656	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20503104	2R_20503104_SNP [dm3] 2R_24615581_SNP [dm6]	T	A	5.597e^-6	0.656	UTR_3_PRIME CG13594 UPSTREAM CG4741
2R	20504051	2R_20504051_SNP [dm3] 2R_24616528_SNP [dm6]	C	T	5.597e^-6	0.656	INTRON CG13594
2R	20506244	2R_20506244_SNP [dm3] 2R_24618721_SNP [dm6]	T	C	5.597e^-6	0.656	INTRON CG13594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20506326	2R_20506326_SNP [dm3] 2R_24618803_SNP [dm6]	A	T	5.597e^-6	0.656	INTRON CG13594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20506413	2R_20506413_SNP [dm3] 2R_24618890_SNP [dm6]	C	T	5.597e^-6	0.656	INTRON CG13594	TF binding site mE1_TFBS_chinmo
2L	12384873	2L_12384873_SNP [dm3] 2L_12384873_SNP [dm6]	C	A	5.829e^-6	0.656	INTRON bru-2
2R	12606293	2R_12606293_SNP [dm3] 2R_16718788_SNP [dm6]	G	A	6.232e^-6	0.656	INTRON CG30463
2R	20504626	2R_20504626_SNP [dm3] 2R_24617103_SNP [dm6]	C	G	6.357e^-6	0.656	INTRON CG13594
2R	10319366	2R_10319366_DEL [dm3] 2R_14431861_DEL [dm6]	TAACT	T	6.675e^-6	0.656	INTRON phyl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9342606	X_9342606_SNP [dm3] X_9448573_SNP [dm6]	T	A	7.137e^-6	0.656	INTRON mgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	5374724	3L_5374724_SNP [dm3] 3L_5381624_SNP [dm6]	A	G	7.346e^-6	0.656	INTRON Ir64a
2L	17547852	2L_17547852_SNP [dm3] 2L_17547852_SNP [dm6]	G	A	8.396e^-6	0.716	DOWNSTREAM CR45697 INTERGENIC
3R	11064075	3R_11064075_SNP [dm3] 3R_15238353_SNP [dm6]	A	T	9.381e^-6	0.725	NON_SYNONYMOUS_CODING tefu
3R	11064138	3R_11064138_SNP [dm3] 3R_15238416_SNP [dm6]	C	T	9.381e^-6	0.725	INTRON tefu
3R	11064120	3R_11064120_SNP [dm3] 3R_15238398_SNP [dm6]	T	A	9.733e^-6	0.725	INTRON tefu
3R	23268702	3R_23268702_SNP [dm3] 3R_27442980_SNP [dm6]	A	T	1.256e^-5	0.725	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	390526	2L_390526_INS [dm3] 2L_390526_INS [dm6]	A	TT	1.390e^-5	0.725	INTERGENIC
3L	1662168	3L_1662168_SNP [dm3] 3L_1662168_SNP [dm6]	G	C	1.419e^-5	0.725	SYNONYMOUS_CODING CG7971 INTRON CG7971	TF binding site mE1_TFBS_chinmo
3L	10203238	3L_10203238_SNP [dm3] 3L_10210138_SNP [dm6]	T	C	1.440e^-5	0.725	INTERGENIC
2L	10460507	2L_10460507_SNP [dm3] 2L_10460507_SNP [dm6]	C	T	1.556e^-5	0.725	SYNONYMOUS_CODING LM408
3R	23268607	3R_23268607_SNP [dm3] 3R_27442885_SNP [dm6]	T	C	1.570e^-5	0.725	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	7089397	3L_7089397_SNP [dm3] 3L_7096297_SNP [dm6]	A	G	1.577e^-5	0.725	INTRON form3
2R	10319178	2R_10319178_SNP [dm3] 2R_14431673_SNP [dm6]	G	T	1.608e^-5	0.725	INTRON phyl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
2R	1385661	2R_1385661_SNP [dm3] 2R_5498156_SNP [dm6]	T	C	1.615e^-5	0.725	INTRON CG30438	transposable element FlyBase
3R	27473150	3R_27473150_SNP [dm3] 3R_31647428_SNP [dm6]	A	G	1.670e^-5	0.725	INTRON kek6	TF binding site mE1_TFBS_chinmo
X	8636583	X_8636583_SNP [dm3] X_8742550_SNP [dm6]	G	A	1.720e^-5	0.725	INTERGENIC
2L	1722304	2L_1722304_SNP [dm3] 2L_1722304_SNP [dm6]	A	G	1.723e^-5	0.725	INTRON Rim2
3L	2606496	3L_2606496_SNP [dm3] 3L_2606496_SNP [dm6]	C	A	1.809e^-5	0.725	INTRON Pxn
2L	6021205	2L_6021205_SNP [dm3] 2L_6021205_SNP [dm6]	G	T	1.860e^-5	0.725	INTRON CG13996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11231152	3R_11231152_SNP [dm3] 3R_15405430_SNP [dm6]	C	A	1.924e^-5	0.725	NON_SYNONYMOUS_CODING CG6125 INTRON CG6125
2L	15404686	2L_15404686_SNP [dm3] 2L_15404686_SNP [dm6]	T	A	1.973e^-5	0.725	INTERGENIC
3L	1657305	3L_1657305_SNP [dm3] 3L_1657305_SNP [dm6]	T	A	1.981e^-5	0.725	NON_SYNONYMOUS_CODING CG7971
X	19434528	X_19434528_DEL [dm3] X_19540495_DEL [dm6]	CTC	C	2.021e^-5	0.725	INTRON CG32532
2R	3797909	2R_3797909_SNP [dm3] 2R_7910404_SNP [dm6]	C	A	2.039e^-5	0.725	INTRON CG30377
2R	10319356	2R_10319356_SNP [dm3] 2R_14431851_SNP [dm6]	G	T	2.058e^-5	0.725	INTRON phyl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2816350	X_2816350_SNP [dm3] X_2922317_SNP [dm6]	T	C	2.081e^-5	0.725	SYNONYMOUS_CODING CG3588 INTRON kirre	TF binding site mE1_TFBS_chinmo
X	19568463	X_19568463_SNP [dm3] X_19674430_SNP [dm6]	C	G	2.086e^-5	0.725	INTRON et	TF binding site mE1_TFBS_cad
2L	168306	2L_168306_SNP [dm3] 2L_168306_SNP [dm6]	C	T	2.088e^-5	0.725	INTRON spen
3L	1657807	3L_1657807_SNP [dm3] 3L_1657807_SNP [dm6]	G	T	2.125e^-5	0.725	SYNONYMOUS_CODING CG7971
3L	1657960	3L_1657960_SNP [dm3] 3L_1657960_SNP [dm6]	A	T	2.132e^-5	0.725	SYNONYMOUS_CODING CG7971
2R	9424200	2R_9424200_SNP [dm3] 2R_13536695_SNP [dm6]	G	A	2.229e^-5	0.725	UPSTREAM tRNA:K2:50C DOWNSTREAM CG6145 INTERGENIC
X	3186425	X_3186425_SNP [dm3] X_3292392_SNP [dm6]	G	A	2.243e^-5	0.725	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	521301	3L_521301_SNP [dm3] 3L_521301_SNP [dm6]	T	A	2.290e^-5	0.725	INTRON klar
3R	11064231	3R_11064231_SNP [dm3] 3R_15238509_SNP [dm6]	G	A	2.314e^-5	0.725	SYNONYMOUS_CODING tefu
3R	10940000	3R_10940000_SNP [dm3] 3R_15114278_SNP [dm6]	G	A	2.400e^-5	0.725	INTRON CG42788
3L	21640849	3L_21640849_SNP [dm3] 3L_21647749_SNP [dm6]	T	A	2.414e^-5	0.725	INTRON CG43980
3L	2653200	3L_2653200_SNP [dm3] 3L_2653200_SNP [dm6]	C	T	2.428e^-5	0.725	UTR_5_PRIME CG42304 UTR_3_PRIME Snup UPSTREAM CG42304
X	4245504	X_4245504_SNP [dm3] X_4351471_SNP [dm6]	C	T	2.455e^-5	0.725	INTRON norpA
3L	1657630	3L_1657630_SNP [dm3] 3L_1657630_SNP [dm6]	C	G	2.467e^-5	0.725	NON_SYNONYMOUS_CODING CG7971
2L	15163822	2L_15163822_SNP [dm3] 2L_15163822_SNP [dm6]	A	T	2.502e^-5	0.725	INTRON CG4168
3L	1657743	3L_1657743_SNP [dm3] 3L_1657743_SNP [dm6]	C	T	2.578e^-5	0.725	NON_SYNONYMOUS_CODING CG7971
3L	1657795	3L_1657795_SNP [dm3] 3L_1657795_SNP [dm6]	T	C	2.578e^-5	0.725	SYNONYMOUS_CODING CG7971
2R	14205164	2R_14205164_SNP [dm3] 2R_18317659_SNP [dm6]	T	C	2.586e^-5	0.725	INTRON sbb	TF binding site mE1_TFBS_cad
2R	18127089	2R_18127089_SNP [dm3] 2R_22239584_SNP [dm6]	T	C	2.618e^-5	0.725	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18127108	2R_18127108_SNP [dm3] 2R_22239603_SNP [dm6]	T	A	2.618e^-5	0.725	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14009703	2L_14009703_INS [dm3] 2L_14009703_INS [dm6]	T	TAT	2.628e^-5	0.725	DOWNSTREAM CG42692 & 1 other INTERGENIC
X	13885939	X_13885939_SNP [dm3] X_13991906_SNP [dm6]	T	G	2.664e^-5	0.725	DOWNSTREAM CR44655 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10113473	2R_10113473_SNP [dm3] 2R_14225968_SNP [dm6]	C	A	2.681e^-5	0.725	INTRON CG8468	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8636574	X_8636574_SNP [dm3] X_8742541_SNP [dm6]	G	A	2.698e^-5	0.725	INTERGENIC
3R	9870830	3R_9870830_SNP [dm3] 3R_14045108_SNP [dm6]	A	T	2.708e^-5	0.725	UPSTREAM tRNA:S2b:88A INTERGENIC
3L	1657174	3L_1657174_SNP [dm3] 3L_1657174_SNP [dm6]	C	A	2.801e^-5	0.734	NON_SYNONYMOUS_CODING CG7971
2R	18127096	2R_18127096_SNP [dm3] 2R_22239591_SNP [dm6]	C	A	2.819e^-5	0.734	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	2642368	3R_2642368_SNP [dm3] 3R_6816646_SNP [dm6]	G	A	2.895e^-5	0.738	UPSTREAM CR42651 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3770538	2L_3770538_SNP [dm3] 2L_3770538_SNP [dm6]	C	T	2.972e^-5	0.738	UPSTREAM CR43704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	10720541	2L_10720541_SNP [dm3] 2L_10720541_SNP [dm6]	G	T	3.105e^-5	0.738	INTERGENIC
X	15684205	X_15684205_SNP [dm3] X_15790172_SNP [dm6]	G	T	3.134e^-5	0.738	INTRON Rhp
2L	18287899	2L_18287899_SNP [dm3] 2L_18287899_SNP [dm6]	C	T	3.328e^-5	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	17748189	2L_17748189_SNP [dm3] 2L_17748189_SNP [dm6]	G	C	3.339e^-5	0.738	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	3186539	X_3186539_SNP [dm3] X_3292506_SNP [dm6]	C	T	3.370e^-5	0.738	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	9342812	X_9342812_SNP [dm3] X_9448779_SNP [dm6]	T	C	3.394e^-5	0.738	INTRON mgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
X	15684210	X_15684210_INS [dm3] X_15790177_INS [dm6]	G	GCGG	3.399e^-5	0.738	INTRON Rhp
2L	3097313	2L_3097313_SNP [dm3] 2L_3097313_SNP [dm6]	C	A	3.444e^-5	0.738	INTRON toc
2R	398616	2R_398616_SNP [dm3] 2R_4511111_SNP [dm6]	A	T	3.484e^-5	0.738	INTERGENIC	transposable element FlyBase
3L	8742795	3L_8742795_SNP [dm3] 3L_8749695_SNP [dm6]	C	A	3.516e^-5	0.738	UTR_5_PRIME CG13306	TF binding site mE1_TFBS_bab1
3L	8743022	3L_8743022_SNP [dm3] 3L_8749922_SNP [dm6]	G	A	3.516e^-5	0.738	UPSTREAM CG13306 INTERGENIC
3L	7089396	3L_7089396_SNP [dm3] 3L_7096296_SNP [dm6]	A	T	3.546e^-5	0.738	INTRON form3
2R	13770863	2R_13770863_SNP [dm3] 2R_17883358_SNP [dm6]	T	C	3.560e^-5	0.738	INTRON Elk
3L	2606507	3L_2606507_SNP [dm3] 3L_2606507_SNP [dm6]	T	A	3.592e^-5	0.738	INTRON Pxn
3R	21914481	3R_21914481_SNP [dm3] 3R_26088759_SNP [dm6]	G	T	3.606e^-5	0.738	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	9993632	3L_9993632_SNP [dm3] 3L_10000532_SNP [dm6]	C	T	3.676e^-5	0.738	INTRON dpr6
3L	5374707	3L_5374707_SNP [dm3] 3L_5381607_SNP [dm6]	C	T	3.733e^-5	0.738	INTRON Ir64a
2R	20486368	2R_20486368_SNP [dm3] 2R_24598845_SNP [dm6]	G	A	3.763e^-5	0.738	DOWNSTREAM pio & 1 other INTRON CG13587	TF binding site mE1_TFBS_sens
2R	20480827	2R_20480827_SNP [dm3] 2R_24593304_SNP [dm6]	C	A	3.816e^-5	0.738	DOWNSTREAM pio INTRON pio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	16741655	3L_16741655_SNP [dm3] 3L_16748555_SNP [dm6]	T	A	3.816e^-5	0.738	INTERGENIC	TF binding site mE1_TFBS_cad
X	15191399	X_15191399_SNP [dm3] X_15297366_SNP [dm6]	G	A	3.868e^-5	0.738	UPSTREAM gce DOWNSTREAM CG5877 EXON CR44429	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6021191	2L_6021191_SNP [dm3] 2L_6021191_SNP [dm6]	T	C	3.874e^-5	0.738	INTRON CG13996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8742928	3L_8742928_SNP [dm3] 3L_8749828_SNP [dm6]	C	A	3.897e^-5	0.738	UPSTREAM CG13306 INTERGENIC
X	9342491	X_9342491_SNP [dm3] X_9448458_SNP [dm6]	C	T	3.931e^-5	0.738	INTRON mgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	2911678	3L_2911678_SNP [dm3] 3L_2911678_SNP [dm6]	C	T	4.016e^-5	0.738	INTRON Shab
2R	4925748	2R_4925748_SNP [dm3] 2R_9038243_SNP [dm6]	G	T	4.039e^-5	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8743233	3L_8743233_SNP [dm3] 3L_8750133_SNP [dm6]	T	G	4.134e^-5	0.738	UPSTREAM CG13306 INTERGENIC
2L	9232839	2L_9232839_SNP [dm3] 2L_9232839_SNP [dm6]	T	C	4.215e^-5	0.738	INTRON tai
3L	2606497	3L_2606497_SNP [dm3] 3L_2606497_SNP [dm6]	A	G	4.322e^-5	0.738	INTRON Pxn
2R	2927196	2R_2927196_SNP [dm3] 2R_7039691_SNP [dm6]	G	A	4.529e^-5	0.738	UPSTREAM CG33914 & 1 other EXON CR12842	TF binding site mE1_TFBS_Trl
3L	3985050	3L_3985050_SNP [dm3] 3L_3985050_SNP [dm6]	A	C	4.584e^-5	0.738	UTR_5_PRIME scrt
2L	7931360	2L_7931360_SNP [dm3] 2L_7931360_SNP [dm6]	G	C	4.609e^-5	0.738	INTRON Snoo
2L	7931513	2L_7931513_SNP [dm3] 2L_7931513_SNP [dm6]	C	T	4.609e^-5	0.738	INTRON Snoo
2L	7931586	2L_7931586_SNP [dm3] 2L_7931586_SNP [dm6]	T	G	4.609e^-5	0.738	INTRON Snoo
2L	12164713	2L_12164713_SNP [dm3] 2L_12164713_SNP [dm6]	G	T	4.666e^-5	0.738	NON_SYNONYMOUS_CODING ZnT33D INTRON CG31760
2L	12164717	2L_12164717_SNP [dm3] 2L_12164717_SNP [dm6]	C	A	4.666e^-5	0.738	NON_SYNONYMOUS_CODING ZnT33D INTRON CG31760
X	15684239	X_15684239_SNP [dm3] X_15790206_SNP [dm6]	T	C	4.704e^-5	0.738	INTRON Rhp
2R	10319360	2R_10319360_INS [dm3] 2R_14431855_INS [dm6]	C	CACACCCC	4.775e^-5	0.738	INTRON phyl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12530693	3L_12530693_SNP [dm3] 3L_12537593_SNP [dm6]	T	A	4.840e^-5	0.738	UTR_3_PRIME sowah UPSTREAM CG4069
2L	5805680	2L_5805680_SNP [dm3] 2L_5805680_SNP [dm6]	A	G	4.889e^-5	0.738	INTRON CG11034	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	17740012	2L_17740012_SNP [dm3] 2L_17740012_SNP [dm6]	T	A	4.897e^-5	0.738	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	1659018	3L_1659018_SNP [dm3] 3L_1659018_SNP [dm6]	T	A	4.908e^-5	0.738	INTRON CG7971
2R	11849746	2R_11849746_SNP [dm3] 2R_15962241_SNP [dm6]	C	T	4.933e^-5	0.738	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20287867	X_20287867_SNP [dm3] X_20416840_SNP [dm6]	G	A	4.984e^-5	0.738	SYNONYMOUS_CODING Obp19b DOWNSTREAM Obp19a	TF binding site mE1_TFBS_chinmo
3L	8753480	3L_8753480_SNP [dm3] 3L_8760380_SNP [dm6]	G	T	5.002e^-5	0.738	NON_SYNONYMOUS_CODING Fhos	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6231602	3R_6231602_SNP [dm3] 3R_10405880_SNP [dm6]	A	G	5.043e^-5	0.738	SYNONYMOUS_CODING CG6325
3R	21914484	3R_21914484_SNP [dm3] 3R_26088762_SNP [dm6]	T	A	5.064e^-5	0.738	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	10288568	3R_10288568_SNP [dm3] 3R_14462846_SNP [dm6]	A	T	5.064e^-5	0.738	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6309642	2L_6309642_SNP [dm3] 2L_6309642_SNP [dm6]	C	T	5.213e^-5	0.738	UPSTREAM CG43922 DOWNSTREAM CG13984 INTRON Ddr
3L	2780909	3L_2780909_SNP [dm3] 3L_2780909_SNP [dm6]	C	G	5.248e^-5	0.738	UTR_5_PRIME mRpS35 DOWNSTREAM Atg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_ttk
2L	19753087	2L_19753087_SNP [dm3] 2L_19753087_SNP [dm6]	G	T	5.273e^-5	0.738	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8750259	3L_8750259_SNP [dm3] 3L_8757159_SNP [dm6]	A	T	5.312e^-5	0.738	UTR_3_PRIME CG6576 INTRON Fhos
2R	11779332	2R_11779332_SNP [dm3] 2R_15891827_SNP [dm6]	T	G	5.365e^-5	0.738	UPSTREAM sli INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7100355	2L_7100355_SNP [dm3] 2L_7100355_SNP [dm6]	C	T	5.367e^-5	0.738	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	3456886	2L_3456886_SNP [dm3] 2L_3456886_SNP [dm6]	G	A	5.375e^-5	0.738	SYNONYMOUS_CODING Cog3 UPSTREAM Sec5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	8261572	X_8261572_SNP [dm3] X_8367539_SNP [dm6]	A	G	5.484e^-5	0.738	UPSTREAM nAChRalpha3 INTERGENIC
2L	12161176	2L_12161176_SNP [dm3] 2L_12161176_SNP [dm6]	T	C	5.485e^-5	0.738	UPSTREAM CG31861 INTRON CG31760
3R	20124529	3R_20124529_SNP [dm3] 3R_24298807_SNP [dm6]	G	A	5.502e^-5	0.738	INTRON crb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24239310	3R_24239310_SNP [dm3] 3R_28413588_SNP [dm6]	T	G	5.552e^-5	0.738	INTERGENIC
2R	18597197	2R_18597197_SNP [dm3] 2R_22709692_SNP [dm6]	G	T	5.578e^-5	0.738	INTRON CG30275
3R	12746845	3R_12746845_SNP [dm3] 3R_16921123_SNP [dm6]	T	A	5.638e^-5	0.738	INTRON iab-8	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	8387880	X_8387880_SNP [dm3] X_8493847_SNP [dm6]	C	G	5.641e^-5	0.738	INTRON CG33181
3L	3805642	3L_3805642_SNP [dm3] 3L_3805642_SNP [dm6]	T	A	5.676e^-5	0.738	INTRON CG32264 & 1 other
3R	24239301	3R_24239301_SNP [dm3] 3R_28413579_SNP [dm6]	C	A	5.765e^-5	0.738	INTERGENIC
X	15684246	X_15684246_INS [dm3] X_15790213_INS [dm6]	A	AA	5.907e^-5	0.738	INTRON Rhp
2L	15392603	2L_15392603_INS [dm3] 2L_15392603_INS [dm6]	A	AT	5.935e^-5	0.738	INTERGENIC
2L	18287895	2L_18287895_SNP [dm3] 2L_18287895_SNP [dm6]	C	A	5.953e^-5	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	20485562	2R_20485562_SNP [dm3] 2R_24598039_SNP [dm6]	T	C	6.039e^-5	0.738	SYNONYMOUS_CODING CG13587 DOWNSTREAM pio
2R	7056322	2R_7056322_SNP [dm3] 2R_11168817_SNP [dm6]	A	G	6.068e^-5	0.738	INTRON shn & 1 other
2L	18315609	2L_18315609_SNP [dm3] 2L_18315609_SNP [dm6]	G	A	6.071e^-5	0.738	INTERGENIC
3R	23010740	3R_23010740_SNP [dm3] 3R_27185018_SNP [dm6]	C	A	6.092e^-5	0.738	INTRON Ser	TF binding site mE1_TFBS_sens
3L	526028	3L_526028_SNP [dm3] 3L_526028_SNP [dm6]	G	T	6.114e^-5	0.738	INTRON klar
X	19493373	X_19493373_SNP [dm3] X_19599340_SNP [dm6]	T	C	6.138e^-5	0.738	UTR_3_PRIME RpS10b DOWNSTREAM CG14220 & 1 other	TF binding site mE1_TFBS_kn
3L	8769005	3L_8769005_SNP [dm3] 3L_8775905_SNP [dm6]	G	A	6.178e^-5	0.738	INTRON Fhos
2L	7931619	2L_7931619_SNP [dm3] 2L_7931619_SNP [dm6]	G	T	6.187e^-5	0.738	INTRON Snoo
X	7743893	X_7743893_SNP [dm3] X_7849860_SNP [dm6]	C	A	6.343e^-5	0.738	INTERGENIC
3L	8757564	3L_8757564_SNP [dm3] 3L_8764464_SNP [dm6]	A	C	6.397e^-5	0.738	INTRON Fhos
2L	17650602	2L_17650602_DEL [dm3] 2L_17650602_DEL [dm6]	ATTTCTCTAAGACCA...	A	6.418e^-5	0.738	INTRON CadN
3R	21914476	3R_21914476_SNP [dm3] 3R_26088754_SNP [dm6]	T	C	6.418e^-5	0.738	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	12865198	2L_12865198_DEL [dm3] 2L_12865198_DEL [dm6]	ATAA	A	6.449e^-5	0.738	INTERGENIC
2R	16967931	2R_16967931_DEL [dm3] 2R_21080426_DEL [dm6]	GTTTACG	G	6.502e^-5	0.738	UPSTREAM Treh INTRON Treh
3R	22898062	3R_22898062_SNP [dm3] 3R_27072340_SNP [dm6]	T	C	6.531e^-5	0.738	INTERGENIC
2R	10307152	2R_10307152_SNP [dm3] 2R_14419647_SNP [dm6]	A	T	6.548e^-5	0.738	UPSTREAM CG17386 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	15684243	X_15684243_SNP [dm3] X_15790210_SNP [dm6]	C	A	6.567e^-5	0.738	INTRON Rhp
3L	8760664	3L_8760664_SNP [dm3] 3L_8767564_SNP [dm6]	G	A	6.619e^-5	0.738	INTRON Fhos
2R	3226744	2R_3226744_SNP [dm3] 2R_7339239_SNP [dm6]	C	T	6.802e^-5	0.738	SYNONYMOUS_CODING Dscam1 INTRON Dscam1
X	9212403	X_9212403_SNP [dm3] X_9318370_SNP [dm6]	G	A	6.889e^-5	0.738	SYNONYMOUS_CODING c12.1 UPSTREAM c12.2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	4006059	3R_4006059_SNP [dm3] 3R_8180337_SNP [dm6]	T	C	6.956e^-5	0.738	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens
2L	15852844	2L_15852844_SNP [dm3] 2L_15852844_SNP [dm6]	C	T	6.970e^-5	0.738	SYNONYMOUS_CODING CG13243
2R	11779420	2R_11779420_SNP [dm3] 2R_15891915_SNP [dm6]	G	A	7.009e^-5	0.738	UPSTREAM sli INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	8184796	X_8184796_SNP [dm3] X_8290763_SNP [dm6]	A	T	7.029e^-5	0.738	INTRON nAChRalpha3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9021398	3L_9021398_SNP [dm3] 3L_9028298_SNP [dm6]	G	A	7.060e^-5	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	17748375	2L_17748375_SNP [dm3] 2L_17748375_SNP [dm6]	A	C	7.184e^-5	0.738	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21914470	3R_21914470_SNP [dm3] 3R_26088748_SNP [dm6]	A	T	7.193e^-5	0.738	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	18315610	2L_18315610_SNP [dm3] 2L_18315610_SNP [dm6]	G	T	7.204e^-5	0.738	INTERGENIC
3R	2642327	3R_2642327_SNP [dm3] 3R_6816605_SNP [dm6]	G	A	7.267e^-5	0.738	UPSTREAM CR42651 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6977976	2R_6977976_SNP [dm3] 2R_11090471_SNP [dm6]	C	T	7.373e^-5	0.738	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	11106881	3R_11106881_SNP [dm3] 3R_15281159_SNP [dm6]	G	A	7.374e^-5	0.738	UPSTREAM Tm1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	13153855	3L_13153855_SNP [dm3] 3L_13160755_SNP [dm6]	A	G	7.570e^-5	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10982127	3L_10982127_SNP [dm3] 3L_10989027_SNP [dm6]	G	T	7.666e^-5	0.738	INTRON klu
3L	21637778	3L_21637778_SNP [dm3] 3L_21644678_SNP [dm6]	T	C	7.670e^-5	0.738	UPSTREAM CG43980 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3770759	2L_3770759_SNP [dm3] 2L_3770759_SNP [dm6]	A	G	7.671e^-5	0.738	UPSTREAM CR43704 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	10517135	2R_10517135_INS [dm3] 2R_14629630_INS [dm6]	T	TGAGCTTCCGTTCTAAATTT...	7.680e^-5	0.738	UPSTREAM CG10131 INTERGENIC
2L	12398375	2L_12398375_SNP [dm3] 2L_12398375_SNP [dm6]	C	T	7.702e^-5	0.738	UTR_5_PRIME Pkd2 DOWNSTREAM bru-2
3R	26444543	3R_26444543_SNP [dm3] 3R_30618821_SNP [dm6]	C	T	7.807e^-5	0.738	STOP_GAINED CG44954
3R	14888469	3R_14888469_SNP [dm3] 3R_19062747_SNP [dm6]	A	T	7.833e^-5	0.738	INTRON cdi
2L	15848186	2L_15848186_SNP [dm3] 2L_15848186_SNP [dm6]	T	C	7.840e^-5	0.738	DOWNSTREAM CR43763 INTERGENIC
3L	978540	3L_978540_SNP [dm3] 3L_978540_SNP [dm6]	T	C	7.848e^-5	0.738	INTRON Glut1
2L	1422656	2L_1422656_SNP [dm3] 2L_1422656_SNP [dm6]	T	A	7.972e^-5	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18123797	2R_18123797_SNP [dm3] 2R_22236292_SNP [dm6]	C	G	8.160e^-5	0.738	DOWNSTREAM CR44755 INTERGENIC
2R	17671915	2R_17671915_SNP [dm3] 2R_21784410_SNP [dm6]	C	T	8.198e^-5	0.738	INTERGENIC
3L	525858	3L_525858_SNP [dm3] 3L_525858_SNP [dm6]	T	C	8.215e^-5	0.738	INTRON klar
2L	11691909	2L_11691909_SNP [dm3] 2L_11691909_SNP [dm6]	T	C	8.275e^-5	0.738	INTERGENIC
2R	1385921	2R_1385921_SNP [dm3] 2R_5498416_SNP [dm6]	A	G	8.312e^-5	0.738	INTRON CG30438	transposable element FlyBase
2R	9357179	2R_9357179_INS [dm3] 2R_13469674_INS [dm6]	C	TGAGG	8.320e^-5	0.738	INTRON arr
2R	9357181	2R_9357181_DEL [dm3] 2R_13469676_DEL [dm6]	GTA	G	8.320e^-5	0.738	INTRON arr
2R	11792188	2R_11792188_SNP [dm3] 2R_15904683_SNP [dm6]	G	A	8.373e^-5	0.738	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12593309	3R_12593309_SNP [dm3] 3R_16767587_SNP [dm6]	G	C	8.403e^-5	0.738	INTRON bxd	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	5283768	2R_5283768_SNP [dm3] 2R_9396263_SNP [dm6]	C	T	8.536e^-5	0.738	UPSTREAM CG8800 DOWNSTREAM CG8801 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	15877732	2L_15877732_SNP [dm3] 2L_15877732_SNP [dm6]	T	C	8.569e^-5	0.738	INTRON CG7653
3L	8757553	3L_8757553_SNP [dm3] 3L_8764453_SNP [dm6]	G	T	8.584e^-5	0.738	INTRON Fhos
X	19786868	X_19786868_SNP [dm3] X_19892835_SNP [dm6]	A	G	8.652e^-5	0.738	UPSTREAM Hers INTRON Hers
X	9212224	X_9212224_SNP [dm3] X_9318191_SNP [dm6]	A	G	8.695e^-5	0.738	UTR_3_PRIME c12.1	TF binding site mE1_TFBS_cad
2L	12816357	2L_12816357_SNP [dm3] 2L_12816357_SNP [dm6]	C	G	8.764e^-5	0.738	DOWNSTREAM kek1 INTERGENIC
3L	16746500	3L_16746500_SNP [dm3] 3L_16753400_SNP [dm6]	C	T	8.851e^-5	0.738	INTERGENIC
2R	10113503	2R_10113503_SNP [dm3] 2R_14225998_SNP [dm6]	G	C	8.889e^-5	0.738	INTRON CG8468	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20943596	X_20943596_SNP [dm3] X_21072569_SNP [dm6]	T	A	8.894e^-5	0.738	INTRON bves	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	3840213	3R_3840213_SNP [dm3] 3R_8014491_SNP [dm6]	T	C	8.945e^-5	0.738	SYNONYMOUS_CODING Pbp95	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
X	20847281	X_20847281_SNP [dm3] X_20976254_SNP [dm6]	C	A	8.990e^-5	0.738	INTERGENIC
2L	15888186	2L_15888186_SNP [dm3] 2L_15888186_SNP [dm6]	C	T	9.083e^-5	0.738	DOWNSTREAM Tep1 EXON CR31824
3R	11039792	3R_11039792_SNP [dm3] 3R_15214070_SNP [dm6]	T	A	9.128e^-5	0.738	NON_SYNONYMOUS_CODING CG4210 UPSTREAM CG6654 DOWNSTREAM SIDL	TF binding site BDTNP1_TFBS_Med
3L	7085299	3L_7085299_SNP [dm3] 3L_7092199_SNP [dm6]	C	T	9.142e^-5	0.738	INTERGENIC
3L	10982156	3L_10982156_SNP [dm3] 3L_10989056_SNP [dm6]	G	T	9.152e^-5	0.738	INTRON klu
2L	21837966	2L_21837966_SNP [dm3] 2L_21837966_SNP [dm6]	T	A	9.168e^-5	0.738	DOWNSTREAM tsh INTERGENIC
3L	10723148	3L_10723148_SNP [dm3] 3L_10730048_SNP [dm6]	A	C	9.178e^-5	0.738	INTERGENIC
3L	1658595	3L_1658595_SNP [dm3] 3L_1658595_SNP [dm6]	A	G	9.182e^-5	0.738	SPLICE_SITE_REGION CG7971 INTRON CG7971
3L	10641127	3L_10641127_SNP [dm3] 3L_10648027_SNP [dm6]	C	T	9.235e^-5	0.738	INTRON CG32066
3L	10725557	3L_10725557_SNP [dm3] 3L_10732457_SNP [dm6]	A	G	9.250e^-5	0.738	INTERGENIC
2R	20172707	2R_20172707_SNP [dm3] 2R_24285184_SNP [dm6]	G	A	9.295e^-5	0.738	INTRON nvy
3R	10055675	3R_10055675_SNP [dm3] 3R_14229953_SNP [dm6]	G	A	9.296e^-5	0.738	UPSTREAM CG9624 INTERGENIC
3R	7537539	3R_7537539_SNP [dm3] 3R_11711817_SNP [dm6]	G	A	9.366e^-5	0.738	SYNONYMOUS_CODING CG14720	TF binding site mE1_TFBS_cad
2L	15858973	2L_15858973_SNP [dm3] 2L_15858973_SNP [dm6]	A	T	9.419e^-5	0.738	INTERGENIC
2L	19694122	2L_19694122_SNP [dm3] 2L_19694122_SNP [dm6]	T	A	9.446e^-5	0.738	INTRON Lar
3L	13226972	3L_13226972_SNP [dm3] 3L_13233872_SNP [dm6]	A	G	9.465e^-5	0.738	INTRON caps
3R	11231121	3R_11231121_SNP [dm3] 3R_15405399_SNP [dm6]	A	G	9.534e^-5	0.738	SYNONYMOUS_CODING CG6125 INTRON CG6125
2R	18601002	2R_18601002_SNP [dm3] 2R_22713497_SNP [dm6]	T	G	9.620e^-5	0.738	SYNONYMOUS_CODING CG30268 DOWNSTREAM CG30275
2R	13770949	2R_13770949_SNP [dm3] 2R_17883444_SNP [dm6]	G	A	9.827e^-5	0.738	INTRON Elk
X	11103000	X_11103000_SNP [dm3] X_11208967_SNP [dm6]	G	T	9.916e^-5	0.738	INTERGENIC
3L	15046252	3L_15046252_SNP [dm3] 3L_15053152_SNP [dm6]	C	T	9.930e^-5	0.738	SYNONYMOUS_CODING CG43680 UPSTREAM CG13461 DOWNSTREAM CG18649 INTRON Sytbeta
3R	14501391	3R_14501391_SNP [dm3] 3R_18675669_SNP [dm6]	C	G	9.972e^-5	0.738	NON_SYNONYMOUS_CODING CG7705 UTR_3_PRIME CG7705 DOWNSTREAM CG7702	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	235852	2L_235852_SNP [dm3] 2L_235852_SNP [dm6]	T	A	9.989e^-5	0.738	SYNONYMOUS_CODING kis	TF binding site mE1_TFBS_sens
2R	4925803	2R_4925803_SNP [dm3] 2R_9038298_SNP [dm6]	G	A	1.002e^-4	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	8387541	X_8387541_SNP [dm3] X_8493508_SNP [dm6]	T	C	1.004e^-4	0.738	INTRON CG33181
X	8387548	X_8387548_SNP [dm3] X_8493515_SNP [dm6]	G	T	1.004e^-4	0.738	INTRON CG33181
X	8387795	X_8387795_SNP [dm3] X_8493762_SNP [dm6]	C	T	1.004e^-4	0.738	INTRON CG33181
3L	7087232	3L_7087232_SNP [dm3] 3L_7094132_SNP [dm6]	G	T	1.004e^-4	0.738	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23268667	3R_23268667_SNP [dm3] 3R_27442945_SNP [dm6]	C	T	1.005e^-4	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7825689	3L_7825689_SNP [dm3] 3L_7832589_SNP [dm6]	A	G	1.009e^-4	0.738	UTR_5_PRIME Pdp1 INTRON Pdp1
X	9944893	X_9944893_SNP [dm3] X_10050860_SNP [dm6]	T	C	1.029e^-4	0.738	DOWNSTREAM Yp2 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16286843	2R_16286843_SNP [dm3] 2R_20399338_SNP [dm6]	G	A	1.033e^-4	0.738	INTERGENIC
2R	15875418	2R_15875418_INS [dm3] 2R_19987913_INS [dm6]	G	GG	1.038e^-4	0.738	INTERGENIC
2L	3770525	2L_3770525_SNP [dm3] 2L_3770525_SNP [dm6]	A	G	1.042e^-4	0.738	UPSTREAM CR43704 DOWNSTREAM CG43707 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	17744134	2L_17744134_SNP [dm3] 2L_17744134_SNP [dm6]	A	T	1.050e^-4	0.738	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5479381	2L_5479381_SNP [dm3] 2L_5479381_SNP [dm6]	A	G	1.054e^-4	0.738	INTERGENIC	TF binding site mE1_TFBS_cad
X	10051933	X_10051933_SNP [dm3] X_10157900_SNP [dm6]	T	A	1.061e^-4	0.738	UPSTREAM CG43902 INTRON CR44894
3L	3804859	3L_3804859_SNP [dm3] 3L_3804859_SNP [dm6]	G	A	1.063e^-4	0.738	INTRON CG32264 & 1 other	TF binding site mE1_TFBS_cad
3L	1608730	3L_1608730_SNP [dm3] 3L_1608730_SNP [dm6]	C	T	1.069e^-4	0.738	INTRON CG33791 & 1 other
2L	15560377	2L_15560377_SNP [dm3] 2L_15560377_SNP [dm6]	T	A	1.095e^-4	0.738	INTRON kek3
2L	12538065	2L_12538065_SNP [dm3] 2L_12538065_SNP [dm6]	G	A	1.101e^-4	0.738	SYNONYMOUS_CODING bun	TF binding site mE1_TFBS_chinmo
2R	11466528	2R_11466528_SNP [dm3] 2R_15579023_SNP [dm6]	G	A	1.101e^-4	0.738	INTERGENIC
X	21476703	X_21476703_SNP [dm3] X_21605676_SNP [dm6]	T	A	1.103e^-4	0.738	UPSTREAM CG14476 DOWNSTREAM CG17450 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx transposable element FlyBase
3L	12521385	3L_12521385_SNP [dm3] 3L_12528285_SNP [dm6]	G	A	1.106e^-4	0.738	SYNONYMOUS_CODING nst	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8389314	X_8389314_DEL [dm3] X_8495281_DEL [dm6]	CATTC	C	1.115e^-4	0.738	INTRON CG33181
3L	1657294	3L_1657294_SNP [dm3] 3L_1657294_SNP [dm6]	C	T	1.115e^-4	0.738	SYNONYMOUS_CODING CG7971
X	9212436	X_9212436_SNP [dm3] X_9318403_SNP [dm6]	G	A	1.117e^-4	0.738	SYNONYMOUS_CODING c12.1 UPSTREAM c12.2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	2390632	2L_2390632_SNP [dm3] 2L_2390632_SNP [dm6]	C	G	1.122e^-4	0.738	NON_SYNONYMOUS_CODING CG43750
3R	23076645	3R_23076645_SNP [dm3] 3R_27250923_SNP [dm6]	A	G	1.123e^-4	0.738	UTR_5_PRIME CG5987 UPSTREAM TfIIA-L DOWNSTREAM pll
3R	19076103	3R_19076103_DEL [dm3] 3R_23250381_DEL [dm6]	TAATAT	T	1.124e^-4	0.738	INTRON CG4449
3L	18070354	3L_18070354_INS [dm3] 3L_18077254_INS [dm6]	T	TAAGT	1.129e^-4	0.738	UPSTREAM CR45392 INTERGENIC
3R	22261148	3R_22261148_SNP [dm3] 3R_26435426_SNP [dm6]	A	C	1.130e^-4	0.738	INTERGENIC
3R	11230216	3R_11230216_SNP [dm3] 3R_15404494_SNP [dm6]	A	T	1.131e^-4	0.738	INTRON CG6125	TF binding site mE1_TFBS_chinmo
2R	9747120	2R_9747120_SNP [dm3] 2R_13859615_SNP [dm6]	C	T	1.131e^-4	0.738	SYNONYMOUS_CODING Uba3 UPSTREAM tum DOWNSTREAM CG16935	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19076185	3R_19076185_SNP [dm3] 3R_23250463_SNP [dm6]	A	G	1.132e^-4	0.738	SYNONYMOUS_CODING CG4449
2L	14891903	2L_14891903_SNP [dm3] 2L_14891903_SNP [dm6]	C	A	1.137e^-4	0.738	INTERGENIC
2L	19824457	2L_19824457_DEL [dm3] 2L_19824457_DEL [dm6]	TGGCCAAGAATTTACTGAAT...	T	1.149e^-4	0.738	INTRON sick
2L	14029661	2L_14029661_SNP [dm3] 2L_14029661_SNP [dm6]	A	G	1.150e^-4	0.738	SYNONYMOUS_CODING CG18095 DOWNSTREAM CG4500
3L	11590890	3L_11590890_SNP [dm3] 3L_11597790_SNP [dm6]	A	T	1.160e^-4	0.738	INTRON CG7368
3L	2780994	3L_2780994_SNP [dm3] 3L_2780994_SNP [dm6]	T	C	1.169e^-4	0.738	UTR_5_PRIME mRpS35 DOWNSTREAM Atg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
X	14037023	X_14037023_DEL [dm3] X_14142990_DEL [dm6]	CC	C	1.174e^-4	0.738	DOWNSTREAM CR44658 INTERGENIC
3R	14373395	3R_14373395_SNP [dm3] 3R_18547673_SNP [dm6]	A	T	1.174e^-4	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	13190232	X_13190232_SNP [dm3] X_13296199_SNP [dm6]	C	T	1.176e^-4	0.738	UPSTREAM CG1622 INTRON CG1764	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4096697	2L_4096697_SNP [dm3] 2L_4096697_SNP [dm6]	C	G	1.178e^-4	0.738	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7087114	3L_7087114_SNP [dm3] 3L_7094014_SNP [dm6]	C	T	1.188e^-4	0.738	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2543517	2L_2543517_SNP [dm3] 2L_2543517_SNP [dm6]	C	T	1.195e^-4	0.738	INTERGENIC
X	20943585	X_20943585_SNP [dm3] X_21072558_SNP [dm6]	T	A	1.195e^-4	0.738	INTRON bves	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16780769	2R_16780769_SNP [dm3] 2R_20893264_SNP [dm6]	A	T	1.196e^-4	0.738	INTRON otp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10833723	3R_10833723_DEL [dm3] 3R_15008001_DEL [dm6]	TA	T	1.208e^-4	0.738	INTERGENIC
2L	18285864	2L_18285864_SNP [dm3] 2L_18285864_SNP [dm6]	G	A	1.211e^-4	0.738	UPSTREAM CG31787 INTERGENIC
2R	12292570	2R_12292570_SNP [dm3] 2R_16405065_SNP [dm6]	A	C	1.212e^-4	0.738	INTRON Sema-2b
X	2497608	X_2497608_SNP [dm3] X_2603575_SNP [dm6]	A	G	1.212e^-4	0.738	SYNONYMOUS_CODING Klp3A UPSTREAM Zw10	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14890314	3R_14890314_SNP [dm3] 3R_19064592_SNP [dm6]	T	G	1.212e^-4	0.738	INTRON cdi	TF binding site BDTNP1_TFBS_twi
3R	21914512	3R_21914512_DEL [dm3] 3R_26088790_DEL [dm6]	AC	A	1.214e^-4	0.738	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	21914516	3R_21914516_SNP [dm3] 3R_26088794_SNP [dm6]	A	T	1.214e^-4	0.738	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	16741610	3L_16741610_SNP [dm3] 3L_16748510_SNP [dm6]	T	C	1.219e^-4	0.738	INTERGENIC	TF binding site mE1_TFBS_cad
X	16784788	X_16784788_SNP [dm3] X_16890755_SNP [dm6]	A	C	1.221e^-4	0.738	DOWNSTREAM CG13002 INTERGENIC
3L	5707209	3L_5707209_SNP [dm3] 3L_5714109_SNP [dm6]	A	G	1.222e^-4	0.738	DOWNSTREAM CG44521 INTRON sif
3L	12006806	3L_12006806_SNP [dm3] 3L_12013706_SNP [dm6]	C	T	1.227e^-4	0.738	INTRON rols
2R	10279504	2R_10279504_SNP [dm3] 2R_14391999_SNP [dm6]	C	T	1.231e^-4	0.738	SYNONYMOUS_CODING CG10104
3L	10723600	3L_10723600_SNP [dm3] 3L_10730500_SNP [dm6]	A	G	1.232e^-4	0.738	INTERGENIC
2R	16578105	2R_16578105_DEL [dm3] 2R_20690600_DEL [dm6]	TAGAAGCTTGT...	T	1.232e^-4	0.738	INTERGENIC
2L	663080	2L_663080_SNP [dm3] 2L_663080_SNP [dm6]	C	G	1.233e^-4	0.738	INTRON ds
X	10024760	X_10024760_SNP [dm3] X_10130727_SNP [dm6]	G	A	1.236e^-4	0.738	INTRON CR44894 & 1 other
X	15684711	X_15684711_SNP [dm3] X_15790678_SNP [dm6]	A	T	1.239e^-4	0.738	INTRON Rhp
X	12026139	X_12026139_SNP [dm3] X_12132106_SNP [dm6]	C	T	1.245e^-4	0.738	INTRON Ten-a
2L	12158733	2L_12158733_SNP [dm3] 2L_12158733_SNP [dm6]	T	A	1.265e^-4	0.738	INTRON CG31760	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	11422505	X_11422505_SNP [dm3] X_11528472_SNP [dm6]	G	A	1.269e^-4	0.738	INTRON Drak	TF binding site BDTNP1_TFBS_dl
3R	20201240	3R_20201240_SNP [dm3] 3R_24375518_SNP [dm6]	C	G	1.271e^-4	0.738	INTRON CG17781
X	7431241	X_7431241_SNP [dm3] X_7537208_SNP [dm6]	T	A	1.275e^-4	0.738	UPSTREAM CG32720 INTRON CG32719	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
X	10051867	X_10051867_SNP [dm3] X_10157834_SNP [dm6]	G	A	1.279e^-4	0.738	UPSTREAM CG43902 INTRON CR44894
X	10051906	X_10051906_SNP [dm3] X_10157873_SNP [dm6]	T	A	1.279e^-4	0.738	UPSTREAM CG43902 INTRON CR44894
2L	19824413	2L_19824413_SNP [dm3] 2L_19824413_SNP [dm6]	G	C	1.280e^-4	0.738	INTRON sick
3L	2780919	3L_2780919_SNP [dm3] 3L_2780919_SNP [dm6]	T	C	1.287e^-4	0.738	UTR_5_PRIME mRpS35 DOWNSTREAM Atg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_ttk
2L	6852702	2L_6852702_SNP [dm3] 2L_6852702_SNP [dm6]	T	A	1.290e^-4	0.738	NON_SYNONYMOUS_CODING Rca1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12218440	2R_12218440_SNP [dm3] 2R_16330935_SNP [dm6]	G	T	1.290e^-4	0.738	INTRON Vha44	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	21498409	X_21498409_SNP [dm3] X_21627382_SNP [dm6]	G	A	1.291e^-4	0.738	INTRON DIP1	transposable element FlyBase
2L	6843813	2L_6843813_SNP [dm3] 2L_6843813_SNP [dm6]	T	C	1.297e^-4	0.738	INTERGENIC
2L	13398832	2L_13398832_SNP [dm3] 2L_13398832_SNP [dm6]	A	C	1.302e^-4	0.738	UPSTREAM CG7110 & 1 other DOWNSTREAM CR44600 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
2L	13953172	2L_13953172_SNP [dm3] 2L_13953172_SNP [dm6]	C	A	1.308e^-4	0.738	INTRON Ance-3	TF binding site mE1_TFBS_cad
X	18424673	X_18424673_SNP [dm3] X_18530640_SNP [dm6]	A	C	1.317e^-4	0.738	INTRON Bx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
X	18424675	X_18424675_SNP [dm3] X_18530642_SNP [dm6]	A	G	1.317e^-4	0.738	INTRON Bx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
X	18424711	X_18424711_SNP [dm3] X_18530678_SNP [dm6]	G	C	1.317e^-4	0.738	INTRON Bx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	3770535	2L_3770535_SNP [dm3] 2L_3770535_SNP [dm6]	T	C	1.330e^-4	0.738	UPSTREAM CR43704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	2443610	2R_2443610_SNP [dm3] 2R_6556105_SNP [dm6]	C	T	1.332e^-4	0.738	INTRON jing	TF binding site mE1_TFBS_sens
3R	10733441	3R_10733441_SNP [dm3] 3R_14907719_SNP [dm6]	A	G	1.337e^-4	0.738	INTERGENIC
2L	7717065	2L_7717065_SNP [dm3] 2L_7717065_SNP [dm6]	T	C	1.338e^-4	0.738	NON_SYNONYMOUS_CODING CG13793 UPSTREAM CG33296
X	19568095	X_19568095_SNP [dm3] X_19674062_SNP [dm6]	C	G	1.339e^-4	0.738	INTRON et	transposable element FlyBase
3L	8751633	3L_8751633_SNP [dm3] 3L_8758533_SNP [dm6]	C	G	1.349e^-4	0.738	INTRON Fhos
3R	11230200	3R_11230200_SNP [dm3] 3R_15404478_SNP [dm6]	G	C	1.350e^-4	0.738	INTRON CG6125
3L	8725357	3L_8725357_SNP [dm3] 3L_8732257_SNP [dm6]	C	T	1.352e^-4	0.738	SYNONYMOUS_CODING Cp16 DOWNSTREAM Prm	TF binding site mE1_TFBS_chinmo
2L	1567907	2L_1567907_SNP [dm3] 2L_1567907_SNP [dm6]	T	A	1.354e^-4	0.738	INTRON haf
X	13190230	X_13190230_SNP [dm3] X_13296197_SNP [dm6]	G	T	1.355e^-4	0.738	UPSTREAM CG1622 INTRON CG1764	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	9944961	X_9944961_SNP [dm3] X_10050928_SNP [dm6]	T	C	1.358e^-4	0.738	DOWNSTREAM Yp2 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8769065	3L_8769065_SNP [dm3] 3L_8775965_SNP [dm6]	G	A	1.366e^-4	0.738	INTRON Fhos
2L	3477568	2L_3477568_SNP [dm3] 2L_3477568_SNP [dm6]	G	T	1.368e^-4	0.738	UPSTREAM Thor EXON CR43928	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	21844401	2L_21844401_SNP [dm3] 2L_21844401_SNP [dm6]	C	T	1.381e^-4	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19076465	X_19076465_SNP [dm3] X_19182432_SNP [dm6]	G	C	1.381e^-4	0.738	UPSTREAM CG33253 DOWNSTREAM CG7453 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15698693	2R_15698693_SNP [dm3] 2R_19811188_SNP [dm6]	A	G	1.382e^-4	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	15270145	X_15270145_SNP [dm3] X_15376112_SNP [dm6]	A	C	1.385e^-4	0.738	INTRON acj6
X	15191324	X_15191324_SNP [dm3] X_15297291_SNP [dm6]	T	C	1.387e^-4	0.738	UPSTREAM gce DOWNSTREAM CR44429 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5337611	X_5337611_SNP [dm3] X_5443578_SNP [dm6]	G	A	1.390e^-4	0.738	INTERGENIC
2R	19059819	2R_19059819_SNP [dm3] 2R_23172296_SNP [dm6]	G	T	1.400e^-4	0.738	INTRON CG34371	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	21635911	3L_21635911_SNP [dm3] 3L_21642811_SNP [dm6]	A	T	1.402e^-4	0.738	DOWNSTREAM Atox1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	16533838	2L_16533838_SNP [dm3] 2L_16533838_SNP [dm6]	G	C	1.403e^-4	0.738	UPSTREAM CG5953 DOWNSTREAM CR45354 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	7089401	3L_7089401_SNP [dm3] 3L_7096301_SNP [dm6]	T	C	1.409e^-4	0.738	INTRON form3
2R	8909431	2R_8909431_SNP [dm3] 2R_13021926_SNP [dm6]	A	T	1.412e^-4	0.738	INTERGENIC
2L	15990332	2L_15990332_SNP [dm3] 2L_15990332_SNP [dm6]	A	C	1.412e^-4	0.738	DOWNSTREAM CR43412 INTERGENIC
2R	10092902	2R_10092902_SNP [dm3] 2R_14205397_SNP [dm6]	A	G	1.421e^-4	0.738	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	9423366	2R_9423366_SNP [dm3] 2R_13535861_SNP [dm6]	C	T	1.424e^-4	0.738	DOWNSTREAM tRNA:K2:50C INTERGENIC
X	2500748	X_2500748_SNP [dm3] X_2606715_SNP [dm6]	T	A	1.425e^-4	0.738	UTR_3_PRIME Zw10 & 1 other
2L	11930045	2L_11930045_SNP [dm3] 2L_11930045_SNP [dm6]	C	T	1.428e^-4	0.738	INTERGENIC
2R	19290176	2R_19290176_SNP [dm3] 2R_23402653_SNP [dm6]	C	T	1.428e^-4	0.738	UPSTREAM CG3520 INTERGENIC
3L	1752458	3L_1752458_SNP [dm3] 3L_1752458_SNP [dm6]	C	T	1.433e^-4	0.738	UTR_3_PRIME Cht2 DOWNSTREAM Cht2 & 1 other
X	12607120	X_12607120_SNP [dm3] X_12713087_SNP [dm6]	A	T	1.452e^-4	0.738	NON_SYNONYMOUS_CODING Smr
2L	18285894	2L_18285894_SNP [dm3] 2L_18285894_SNP [dm6]	T	A	1.453e^-4	0.738	UPSTREAM CG31787 INTERGENIC
2L	965733	2L_965733_SNP [dm3] 2L_965733_SNP [dm6]	C	T	1.455e^-4	0.738	INTERGENIC
3R	26444300	3R_26444300_SNP [dm3] 3R_30618578_SNP [dm6]	A	C	1.464e^-4	0.738	DOWNSTREAM CG44954 INTERGENIC
X	8261634	X_8261634_SNP [dm3] X_8367601_SNP [dm6]	G	T	1.465e^-4	0.738	UPSTREAM nAChRalpha3 INTERGENIC
2L	18794460	2L_18794460_SNP [dm3] 2L_18794460_SNP [dm6]	G	A	1.470e^-4	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	4952827	2R_4952827_SNP [dm3] 2R_9065322_SNP [dm6]	T	A	1.475e^-4	0.738	INTRON ana	regulatory region REDfly_CRMs
3L	16487076	3L_16487076_SNP [dm3] 3L_16493976_SNP [dm6]	C	A	1.485e^-4	0.738	INTRON CG33158 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2L	20777674	2L_20777674_SNP [dm3] 2L_20777674_SNP [dm6]	C	T	1.489e^-4	0.738	INTRON cad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2558963	2L_2558963_SNP [dm3] 2L_2558963_SNP [dm6]	A	C	1.492e^-4	0.738	INTERGENIC
3R	18926275	3R_18926275_SNP [dm3] 3R_23100553_SNP [dm6]	A	G	1.496e^-4	0.738	SYNONYMOUS_CODING CG6738 INTRON CG13830	TF binding site mE1_TFBS_sens
3L	13835618	3L_13835618_SNP [dm3] 3L_13842518_SNP [dm6]	T	G	1.498e^-4	0.738	UTR_3_PRIME CG8750 UPSTREAM CG8757 DOWNSTREAM CG8750
3R	19076032	3R_19076032_SNP [dm3] 3R_23250310_SNP [dm6]	C	T	1.501e^-4	0.738	SYNONYMOUS_CODING CG4449
3L	7087094	3L_7087094_SNP [dm3] 3L_7093994_SNP [dm6]	T	A	1.504e^-4	0.738	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14205156	2R_14205156_SNP [dm3] 2R_18317651_SNP [dm6]	T	G	1.504e^-4	0.738	INTRON sbb	TF binding site mE1_TFBS_cad
3R	16487104	3R_16487104_SNP [dm3] 3R_20661382_SNP [dm6]	T	C	1.507e^-4	0.738	INTERGENIC
2R	9638282	2R_9638282_SNP [dm3] 2R_13750777_SNP [dm6]	G	T	1.516e^-4	0.738	INTERGENIC
2L	15124349	2L_15124349_SNP [dm3] 2L_15124349_SNP [dm6]	A	G	1.518e^-4	0.738	INTERGENIC
2L	4962675	2L_4962675_SNP [dm3] 2L_4962675_SNP [dm6]	C	T	1.519e^-4	0.738	SYNONYMOUS_CODING CG34124	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9660587	X_9660587_SNP [dm3] X_9766554_SNP [dm6]	T	G	1.526e^-4	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5479339	2L_5479339_SNP [dm3] 2L_5479339_SNP [dm6]	C	T	1.527e^-4	0.738	INTERGENIC	TF binding site mE1_TFBS_cad
3R	10286801	3R_10286801_SNP [dm3] 3R_14461079_SNP [dm6]	T	C	1.528e^-4	0.738	INTRON cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
2R	19220241	2R_19220241_SNP [dm3] 2R_23332718_SNP [dm6]	A	T	1.530e^-4	0.738	INTERGENIC
2L	15560323	2L_15560323_SNP [dm3] 2L_15560323_SNP [dm6]	T	A	1.530e^-4	0.738	INTRON kek3
3L	7087005	3L_7087005_SNP [dm3] 3L_7093905_SNP [dm6]	G	T	1.532e^-4	0.738	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15120541	3R_15120541_SNP [dm3] 3R_19294819_SNP [dm6]	G	C	1.536e^-4	0.738	INTERGENIC
3L	21637344	3L_21637344_SNP [dm3] 3L_21644244_SNP [dm6]	G	T	1.539e^-4	0.738	UPSTREAM CG43980 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	1403296	2R_1403296_SNP [dm3] 2R_5515791_SNP [dm6]	T	G	1.547e^-4	0.738	INTRON CG30438
2R	16428356	2R_16428356_SNP [dm3] 2R_20540851_SNP [dm6]	C	T	1.552e^-4	0.738	UPSTREAM CG13428 EXON CR44652	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	19436590	2L_19436590_SNP [dm3] 2L_19436590_SNP [dm6]	C	T	1.553e^-4	0.738	SYNONYMOUS_CODING CG10237 DOWNSTREAM Rab9	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4983440	3L_4983440_SNP [dm3] 3L_4983440_SNP [dm6]	T	A	1.557e^-4	0.738	INTRON Con
X	10051773	X_10051773_SNP [dm3] X_10157740_SNP [dm6]	G	A	1.564e^-4	0.738	UPSTREAM CG43902 INTRON CR44894
2L	15604606	2L_15604606_DEL [dm3] 2L_15604606_DEL [dm6]	TT	T	1.568e^-4	0.738	INTERGENIC
X	10051924	X_10051924_SNP [dm3] X_10157891_SNP [dm6]	A	G	1.570e^-4	0.738	UPSTREAM CG43902 INTRON CR44894
2L	6352300	2L_6352300_SNP [dm3] 2L_6352300_SNP [dm6]	G	T	1.570e^-4	0.738	DOWNSTREAM ppk7 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	12589650	3L_12589650_SNP [dm3] 3L_12596550_SNP [dm6]	G	A	1.571e^-4	0.738	DOWNSTREAM ara INTERGENIC
2R	3165935	2R_3165935_SNP [dm3] 2R_7278430_SNP [dm6]	A	C	1.573e^-4	0.738	UPSTREAM Incenp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3597986	2R_3597986_SNP [dm3] 2R_7710481_SNP [dm6]	T	C	1.580e^-4	0.738	UTR_5_PRIME CG1941 UPSTREAM mir-4909
X	9464930	X_9464930_SNP [dm3] X_9570897_SNP [dm6]	G	T	1.584e^-4	0.738	NON_SYNONYMOUS_CODING Cubn DOWNSTREAM CG32699
3R	19075969	3R_19075969_SNP [dm3] 3R_23250247_SNP [dm6]	T	A	1.594e^-4	0.738	INTRON CG4449
2L	8799978	2L_8799978_SNP [dm3] 2L_8799978_SNP [dm6]	G	T	1.596e^-4	0.738	INTERGENIC
3R	10038759	3R_10038759_SNP [dm3] 3R_14213037_SNP [dm6]	T	A	1.596e^-4	0.738	INTRON Dop1R1
3L	5204419	3L_5204419_SNP [dm3] 3L_5211319_SNP [dm6]	A	G	1.599e^-4	0.738	INTRON shep
3L	21769791	3L_21769791_SNP [dm3] 3L_21776691_SNP [dm6]	T	G	1.602e^-4	0.738	INTRON CG42689 & 1 other	TF binding site mE1_TFBS_cad
3R	21914480	3R_21914480_SNP [dm3] 3R_26088758_SNP [dm6]	A	T	1.604e^-4	0.738	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	11342998	3L_11342998_SNP [dm3] 3L_11349898_SNP [dm6]	G	T	1.604e^-4	0.738	UPSTREAM CR45251 INTERGENIC
2R	15812400	2R_15812400_SNP [dm3] 2R_19924895_SNP [dm6]	A	C	1.610e^-4	0.738	DOWNSTREAM CR44626 INTERGENIC
3L	21646148	3L_21646148_SNP [dm3] 3L_21653048_SNP [dm6]	T	A	1.610e^-4	0.738	INTRON CG43980	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	19722432	2L_19722432_SNP [dm3] 2L_19722432_SNP [dm6]	G	T	1.618e^-4	0.738	INTRON Lar
2L	3128027	2L_3128027_SNP [dm3] 2L_3128027_SNP [dm6]	T	C	1.623e^-4	0.738	UPSTREAM CG15403 INTRON toc
3L	8743740	3L_8743740_SNP [dm3] 3L_8750640_SNP [dm6]	C	A	1.635e^-4	0.738	UPSTREAM CG13306 DOWNSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	8744121	3L_8744121_SNP [dm3] 3L_8751021_SNP [dm6]	T	C	1.635e^-4	0.738	DOWNSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8745852	3L_8745852_SNP [dm3] 3L_8752752_SNP [dm6]	G	T	1.635e^-4	0.738	UPSTREAM Fhos INTERGENIC
3L	8752484	3L_8752484_SNP [dm3] 3L_8759384_SNP [dm6]	C	A	1.635e^-4	0.738	SPLICE_SITE_REGION Fhos INTRON Fhos
3L	3921380	3L_3921380_SNP [dm3] 3L_3921380_SNP [dm6]	T	C	1.641e^-4	0.738	INTRON Eip63F-1
3L	7087229	3L_7087229_SNP [dm3] 3L_7094129_SNP [dm6]	T	G	1.645e^-4	0.738	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17650591	2L_17650591_DEL [dm3] 2L_17650591_DEL [dm6]	ACAT	TG	1.653e^-4	0.738	INTRON CadN
3R	24239094	3R_24239094_SNP [dm3] 3R_28413372_SNP [dm6]	T	A	1.657e^-4	0.738	INTERGENIC
2L	15990315	2L_15990315_SNP [dm3] 2L_15990315_SNP [dm6]	A	G	1.663e^-4	0.738	DOWNSTREAM CR43412 INTERGENIC
3R	14818792	3R_14818792_SNP [dm3] 3R_18993070_SNP [dm6]	G	A	1.664e^-4	0.738	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	7087070	3L_7087070_SNP [dm3] 3L_7093970_SNP [dm6]	C	G	1.665e^-4	0.738	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2683081	3L_2683081_SNP [dm3] 3L_2683081_SNP [dm6]	A	C	1.667e^-4	0.738	INTRON Fife
2L	17752026	2L_17752026_SNP [dm3] 2L_17752026_SNP [dm6]	C	A	1.670e^-4	0.738	UTR_5_PRIME CadN INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	17159156	2R_17159156_SNP [dm3] 2R_21271651_SNP [dm6]	T	C	1.673e^-4	0.738	INTRON Rgk3
3R	12746407	3R_12746407_SNP [dm3] 3R_16920685_SNP [dm6]	G	T	1.680e^-4	0.738	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21694560	3R_21694560_SNP [dm3] 3R_25868838_SNP [dm6]	A	T	1.698e^-4	0.738	INTRON CG5890
3R	11230172	3R_11230172_SNP [dm3] 3R_15404450_SNP [dm6]	A	C	1.703e^-4	0.738	INTRON CG6125
3R	23040705	3R_23040705_SNP [dm3] 3R_27214983_SNP [dm6]	A	G	1.707e^-4	0.738	INTERGENIC
X	21498527	X_21498527_SNP [dm3] X_21627500_SNP [dm6]	G	A	1.710e^-4	0.738	INTRON DIP1	transposable element FlyBase
3R	10199649	3R_10199649_SNP [dm3] 3R_14373927_SNP [dm6]	G	T	1.712e^-4	0.738	UPSTREAM NK7.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7087059	3L_7087059_MNP [dm3] 3L_7093959_MNP [dm6]	CTT	ACA	1.720e^-4	0.738	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7087064	3L_7087064_DEL [dm3] 3L_7093964_DEL [dm6]	GTA	T	1.720e^-4	0.738	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7087106	3L_7087106_SNP [dm3] 3L_7094006_SNP [dm6]	T	A	1.720e^-4	0.738	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	21751508	3L_21751508_SNP [dm3] 3L_21758408_SNP [dm6]	G	T	1.728e^-4	0.738	DOWNSTREAM CG14564 INTRON Syn1
3L	9183748	3L_9183748_SNP [dm3] 3L_9190648_SNP [dm6]	T	A	1.741e^-4	0.738	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18313346	2L_18313346_SNP [dm3] 2L_18313346_SNP [dm6]	G	A	1.742e^-4	0.738	DOWNSTREAM CR44489 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1549161	3L_1549161_SNP [dm3] 3L_1549161_SNP [dm6]	C	T	1.742e^-4	0.738	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15990338	2L_15990338_SNP [dm3] 2L_15990338_SNP [dm6]	C	T	1.750e^-4	0.738	DOWNSTREAM CR43412 INTERGENIC
3R	18040737	3R_18040737_SNP [dm3] 3R_22215015_SNP [dm6]	G	C	1.751e^-4	0.738	INTRON SKIP & 1 other	TF binding site mE1_TFBS_inv
X	1426556	X_1426556_SNP [dm3] X_1532523_SNP [dm6]	G	T	1.751e^-4	0.738	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
X	5349154	X_5349154_SNP [dm3] X_5455121_SNP [dm6]	G	T	1.751e^-4	0.738	INTRON SPR
3L	3399825	3L_3399825_SNP [dm3] 3L_3399825_SNP [dm6]	C	A	1.753e^-4	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21844412	2L_21844412_SNP [dm3] 2L_21844412_SNP [dm6]	G	T	1.766e^-4	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13725290	2L_13725290_SNP [dm3] 2L_13725290_SNP [dm6]	C	T	1.768e^-4	0.738	INTERGENIC
X	20849560	X_20849560_SNP [dm3] X_20978533_SNP [dm6]	C	A	1.770e^-4	0.738	SYNONYMOUS_CODING CG44426
2R	16438385	2R_16438385_SNP [dm3] 2R_20550880_SNP [dm6]	C	T	1.774e^-4	0.738	NON_SYNONYMOUS_CODING CG13430 UTR_3_PRIME CG18065 UPSTREAM Cpr57A & 1 other	regulatory region REDfly_CRMs
3L	8757332	3L_8757332_SNP [dm3] 3L_8764232_SNP [dm6]	C	G	1.775e^-4	0.738	INTRON Fhos
3L	8761055	3L_8761055_SNP [dm3] 3L_8767955_SNP [dm6]	G	T	1.775e^-4	0.738	INTRON Fhos
3L	7976323	3L_7976323_SNP [dm3] 3L_7983223_SNP [dm6]	C	A	1.777e^-4	0.738	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	21495134	X_21495134_SNP [dm3] X_21624107_SNP [dm6]	T	C	1.778e^-4	0.738	UPSTREAM CG32500 DOWNSTREAM DIP1 INTERGENIC	transposable element FlyBase
3R	21694609	3R_21694609_SNP [dm3] 3R_25868887_SNP [dm6]	T	C	1.778e^-4	0.738	INTRON CG5890	TF binding site mE1_TFBS_HSA
2R	9651499	2R_9651499_SNP [dm3] 2R_13763994_SNP [dm6]	T	A	1.782e^-4	0.738	INTERGENIC
3L	16746380	3L_16746380_SNP [dm3] 3L_16753280_SNP [dm6]	G	T	1.785e^-4	0.738	INTERGENIC
X	19963722	X_19963722_SNP [dm3] X_20069689_SNP [dm6]	T	C	1.787e^-4	0.738	INTERGENIC
3R	13880982	3R_13880982_INS [dm3] 3R_18055260_INS [dm6]	A	ATAAAA	1.790e^-4	0.738	INTERGENIC
2R	2443611	2R_2443611_SNP [dm3] 2R_6556106_SNP [dm6]	A	C	1.792e^-4	0.738	INTRON jing	TF binding site mE1_TFBS_sens
2L	15859103	2L_15859103_SNP [dm3] 2L_15859103_SNP [dm6]	C	G	1.798e^-4	0.738	INTERGENIC
3R	10906155	3R_10906155_SNP [dm3] 3R_15080433_SNP [dm6]	G	T	1.803e^-4	0.738	UTR_3_PRIME CG6966 DOWNSTREAM CG6966
3L	1657154	3L_1657154_SNP [dm3] 3L_1657154_SNP [dm6]	A	C	1.804e^-4	0.738	NON_SYNONYMOUS_CODING CG7971
2R	10319022	2R_10319022_SNP [dm3] 2R_14431517_SNP [dm6]	T	C	1.805e^-4	0.738	INTRON phyl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17388404	3R_17388404_SNP [dm3] 3R_21562682_SNP [dm6]	C	G	1.811e^-4	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
2L	5500998	2L_5500998_SNP [dm3] 2L_5500998_SNP [dm6]	A	T	1.817e^-4	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	13166658	2R_13166658_SNP [dm3] 2R_17279153_SNP [dm6]	A	T	1.818e^-4	0.738	INTRON mbl
2R	16584552	2R_16584552_SNP [dm3] 2R_20697047_SNP [dm6]	A	G	1.824e^-4	0.738	INTERGENIC
3R	23040727	3R_23040727_SNP [dm3] 3R_27215005_SNP [dm6]	G	T	1.826e^-4	0.738	INTERGENIC
2L	3571355	2L_3571355_SNP [dm3] 2L_3571355_SNP [dm6]	T	C	1.828e^-4	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	12269538	2R_12269538_SNP [dm3] 2R_16382033_SNP [dm6]	C	G	1.829e^-4	0.738	UTR_3_PRIME CG43187 DOWNSTREAM CG43187
2L	3995365	2L_3995365_SNP [dm3] 2L_3995365_SNP [dm6]	G	A	1.841e^-4	0.738	INTERGENIC
2R	12173010	2R_12173010_SNP [dm3] 2R_16285505_SNP [dm6]	A	G	1.848e^-4	0.738	SYNONYMOUS_CODING CG9068 DOWNSTREAM CR43728
X	2609520	X_2609520_SNP [dm3] X_2715487_SNP [dm6]	A	G	1.852e^-4	0.738	INTRON CG2694	TF binding site mE1_TFBS_ttk
3R	11061983	3R_11061983_SNP [dm3] 3R_15236261_SNP [dm6]	A	G	1.857e^-4	0.738	SYNONYMOUS_CODING tefu	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3L	2683126	3L_2683126_SNP [dm3] 3L_2683126_SNP [dm6]	T	C	1.857e^-4	0.738	INTRON Fife
3R	9529189	3R_9529189_SNP [dm3] 3R_13703467_SNP [dm6]	G	A	1.864e^-4	0.738	SYNONYMOUS_CODING Adgf-D DOWNSTREAM ninaB	TF binding site mE1_TFBS_cad
3L	21645236	3L_21645236_SNP [dm3] 3L_21652136_SNP [dm6]	C	A	1.864e^-4	0.738	INTRON CG43980
3L	7087057	3L_7087057_SNP [dm3] 3L_7093957_SNP [dm6]	A	C	1.869e^-4	0.738	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17547888	2L_17547888_INS [dm3] 2L_17547888_INS [dm6]	T	TT	1.869e^-4	0.738	DOWNSTREAM CR45697 INTERGENIC
2L	20120200	2L_20120200_SNP [dm3] 2L_20120200_SNP [dm6]	C	A	1.871e^-4	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
X	8472933	X_8472933_DEL [dm3] X_8578900_DEL [dm6]	TT	T	1.877e^-4	0.738	INTRON CG12065
3R	15120526	3R_15120526_SNP [dm3] 3R_19294804_SNP [dm6]	T	A	1.882e^-4	0.738	INTERGENIC
X	8261642	X_8261642_SNP [dm3] X_8367609_SNP [dm6]	C	G	1.887e^-4	0.738	UPSTREAM nAChRalpha3 INTERGENIC
3L	2437767	3L_2437767_SNP [dm3] 3L_2437767_SNP [dm6]	G	A	1.889e^-4	0.738	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	13726485	2L_13726485_SNP [dm3] 2L_13726485_SNP [dm6]	T	A	1.894e^-4	0.738	INTERGENIC
X	2499484	X_2499484_SNP [dm3] X_2605451_SNP [dm6]	A	C	1.902e^-4	0.738	NON_SYNONYMOUS_CODING Zw10	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
2R	9689492	2R_9689492_SNP [dm3] 2R_13801987_SNP [dm6]	T	C	1.903e^-4	0.738	INTRON Cpr50Cb
2L	15838483	2L_15838483_SNP [dm3] 2L_15838483_SNP [dm6]	A	G	1.905e^-4	0.738	INTERGENIC
3L	1657126	3L_1657126_SNP [dm3] 3L_1657126_SNP [dm6]	G	T	1.906e^-4	0.738	SYNONYMOUS_CODING CG7971
2L	5545681	2L_5545681_INS [dm3] 2L_5545681_INS [dm6]	A	AAAAACA	1.919e^-4	0.738	UTR_3_PRIME Lam	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
X	12607110	X_12607110_SNP [dm3] X_12713077_SNP [dm6]	T	C	1.919e^-4	0.738	NON_SYNONYMOUS_CODING Smr
2R	2767280	2R_2767280_SNP [dm3] 2R_6879775_SNP [dm6]	C	G	1.919e^-4	0.738	NON_SYNONYMOUS_CODING Spn42Db UTR_3_PRIME Spn42Db UPSTREAM Spn42Da EXON CR44169	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17628353	2L_17628353_SNP [dm3] 2L_17628353_SNP [dm6]	T	A	1.925e^-4	0.738	UTR_3_PRIME CG43054
2L	6975847	2L_6975847_SNP [dm3] 2L_6975847_SNP [dm6]	C	T	1.927e^-4	0.738	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	2536531	2R_2536531_SNP [dm3] 2R_6649026_SNP [dm6]	G	A	1.929e^-4	0.738	UTR_5_PRIME debcl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	18424708	X_18424708_SNP [dm3] X_18530675_SNP [dm6]	G	T	1.930e^-4	0.738	INTRON Bx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	8046115	2L_8046115_SNP [dm3] 2L_8046115_SNP [dm6]	C	T	1.931e^-4	0.738	SYNONYMOUS_CODING CG7466
3L	7083884	3L_7083884_SNP [dm3] 3L_7090784_SNP [dm6]	T	A	1.933e^-4	0.738	INTERGENIC
X	18424060	X_18424060_SNP [dm3] X_18530027_SNP [dm6]	C	G	1.937e^-4	0.738	DOWNSTREAM CG15047 INTRON Bx
2L	12398361	2L_12398361_INS [dm3] 2L_12398361_INS [dm6]	A	AGA	1.937e^-4	0.738	UTR_5_PRIME Pkd2 DOWNSTREAM bru-2
3L	1071354	3L_1071354_SNP [dm3] 3L_1071354_SNP [dm6]	T	C	1.946e^-4	0.738	INTRON bab1	TF binding site BDTNP1_TFBS_twi
X	10024990	X_10024990_SNP [dm3] X_10130957_SNP [dm6]	C	T	1.948e^-4	0.738	INTRON CR44894 & 1 other
2L	6136293	2L_6136293_SNP [dm3] 2L_6136293_SNP [dm6]	T	C	1.948e^-4	0.738	INTERGENIC
X	20329220	X_20329220_SNP [dm3] X_20458193_SNP [dm6]	A	C	1.959e^-4	0.738	INTRON CG32506
X	18424799	X_18424799_SNP [dm3] X_18530766_SNP [dm6]	G	C	1.961e^-4	0.738	INTRON Bx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_sens
2R	15812860	2R_15812860_SNP [dm3] 2R_19925355_SNP [dm6]	C	A	1.965e^-4	0.738	DOWNSTREAM CR44626 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21694578	3R_21694578_SNP [dm3] 3R_25868856_SNP [dm6]	G	T	1.973e^-4	0.738	INTRON CG5890
3R	21694586	3R_21694586_SNP [dm3] 3R_25868864_SNP [dm6]	C	T	1.973e^-4	0.738	INTRON CG5890
3R	21694589	3R_21694589_SNP [dm3] 3R_25868867_SNP [dm6]	G	A	1.973e^-4	0.738	INTRON CG5890
2R	12042114	2R_12042114_SNP [dm3] 2R_16154609_SNP [dm6]	T	A	1.978e^-4	0.738	INTRON lbk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_zfh1
2L	12865119	2L_12865119_SNP [dm3] 2L_12865119_SNP [dm6]	A	C	1.982e^-4	0.738	INTERGENIC
2R	10279510	2R_10279510_SNP [dm3] 2R_14392005_SNP [dm6]	C	T	1.983e^-4	0.738	SYNONYMOUS_CODING CG10104
3L	4344227	3L_4344227_INS [dm3] 3L_4344227_INS [dm6]	G	GCCTACATAGA...	1.996e^-4	0.738	INTRON Cip4
X	13317391	X_13317391_SNP [dm3] X_13423358_SNP [dm6]	T	C	2.000e^-4	0.738	INTERGENIC
3R	23268669	3R_23268669_SNP [dm3] 3R_27442947_SNP [dm6]	T	A	2.003e^-4	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11231177	3R_11231177_SNP [dm3] 3R_15405455_SNP [dm6]	G	C	2.008e^-4	0.738	NON_SYNONYMOUS_CODING CG6125 INTRON CG6125
3R	12412546	3R_12412546_SNP [dm3] 3R_16586824_SNP [dm6]	A	C	2.008e^-4	0.738	INTERGENIC
3R	23226187	3R_23226187_SNP [dm3] 3R_27400465_SNP [dm6]	T	G	2.010e^-4	0.738	INTRON side
3R	23226197	3R_23226197_SNP [dm3] 3R_27400475_SNP [dm6]	C	T	2.010e^-4	0.738	INTRON side
3R	23226200	3R_23226200_SNP [dm3] 3R_27400478_SNP [dm6]	G	T	2.010e^-4	0.738	INTRON side
3L	18789522	3L_18789522_SNP [dm3] 3L_18796422_SNP [dm6]	T	A	2.014e^-4	0.738	INTRON ftz-f1
3R	25165933	3R_25165933_SNP [dm3] 3R_29340211_SNP [dm6]	C	G	2.014e^-4	0.738	INTERGENIC
X	20458553	X_20458553_SNP [dm3] X_20587526_SNP [dm6]	T	C	2.016e^-4	0.738	INTERGENIC
2R	11639679	2R_11639679_DEL [dm3] 2R_15752174_DEL [dm6]	CCCAAAAGATAC...	C	2.018e^-4	0.738	INTRON CG30089
2R	10690888	2R_10690888_SNP [dm3] 2R_14803383_SNP [dm6]	C	A	2.021e^-4	0.738	INTRON kn	regulatory region REDfly_CRMs
2L	12837205	2L_12837205_SNP [dm3] 2L_12837205_SNP [dm6]	T	C	2.023e^-4	0.738	INTERGENIC
X	13752369	X_13752369_SNP [dm3] X_13858336_SNP [dm6]	T	C	2.023e^-4	0.738	UTR_3_PRIME mamo INTRON mamo
2R	16568256	2R_16568256_SNP [dm3] 2R_20680751_SNP [dm6]	T	A	2.029e^-4	0.738	INTERGENIC
3R	9395552	3R_9395552_SNP [dm3] 3R_13569830_SNP [dm6]	G	T	2.031e^-4	0.738	INTERGENIC
3L	12006836	3L_12006836_SNP [dm3] 3L_12013736_SNP [dm6]	C	T	2.033e^-4	0.738	INTRON rols
X	16137024	X_16137024_SNP [dm3] X_16242991_SNP [dm6]	T	C	2.037e^-4	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco
2L	19682216	2L_19682216_SNP [dm3] 2L_19682216_SNP [dm6]	C	T	2.038e^-4	0.738	INTRON Lar
3L	15054608	3L_15054608_SNP [dm3] 3L_15061508_SNP [dm6]	C	A	2.045e^-4	0.738	NON_SYNONYMOUS_CODING CG13460 DOWNSTREAM CR43684 INTRON Sytbeta
3L	13113280	3L_13113280_INS [dm3] 3L_13120180_INS [dm6]	T	TT	2.049e^-4	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	5989063	2L_5989063_SNP [dm3] 2L_5989063_SNP [dm6]	C	A	2.050e^-4	0.738	DOWNSTREAM lid & 1 other INTERGENIC
3R	14446588	3R_14446588_SNP [dm3] 3R_18620866_SNP [dm6]	A	T	2.050e^-4	0.738	UPSTREAM CG14304 INTRON qin & 1 other
2L	13398759	2L_13398759_SNP [dm3] 2L_13398759_SNP [dm6]	T	G	2.050e^-4	0.738	UPSTREAM CG7110 & 1 other DOWNSTREAM CR44600 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5374712	3L_5374712_DEL [dm3] 3L_5381612_DEL [dm6]	AAT	A	2.051e^-4	0.738	INTRON Ir64a
3L	8756269	3L_8756269_SNP [dm3] 3L_8763169_SNP [dm6]	C	A	2.053e^-4	0.738	INTRON Fhos
2R	19059846	2R_19059846_DEL [dm3] 2R_23172323_DEL [dm6]	TAGTT	T	2.063e^-4	0.738	INTRON CG34371	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3477487	2L_3477487_SNP [dm3] 2L_3477487_SNP [dm6]	A	G	2.067e^-4	0.738	UPSTREAM Thor EXON CR43928	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	3165892	2R_3165892_SNP [dm3] 2R_7278387_SNP [dm6]	T	C	2.069e^-4	0.738	UPSTREAM Incenp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8029662	3L_8029662_SNP [dm3] 3L_8036562_SNP [dm6]	A	G	2.070e^-4	0.738	INTRON nmo	TF binding site BDTNP1_TFBS_twi
3R	8148600	3R_8148600_SNP [dm3] 3R_12322878_SNP [dm6]	G	T	2.072e^-4	0.738	UPSTREAM CG10013 & 1 other INTERGENIC
2R	16031952	2R_16031952_SNP [dm3] 2R_20144447_SNP [dm6]	T	C	2.074e^-4	0.738	INTERGENIC
2R	19664479	2R_19664479_SNP [dm3] 2R_23776956_SNP [dm6]	C	T	2.075e^-4	0.738	INTRON CG9850
3L	13226853	3L_13226853_SNP [dm3] 3L_13233753_SNP [dm6]	C	A	2.076e^-4	0.738	INTRON caps
3R	2650679	3R_2650679_SNP [dm3] 3R_6824957_SNP [dm6]	T	C	2.077e^-4	0.738	UTR_3_PRIME Scr	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3R	26176801	3R_26176801_SNP [dm3] 3R_30351079_SNP [dm6]	A	G	2.079e^-4	0.738	INTRON hdc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2485388	2R_2485388_SNP [dm3] 2R_6597883_SNP [dm6]	T	A	2.079e^-4	0.738	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	518172	3L_518172_SNP [dm3] 3L_518172_SNP [dm6]	A	G	2.083e^-4	0.738	INTRON klar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15990323	2L_15990323_SNP [dm3] 2L_15990323_SNP [dm6]	A	G	2.088e^-4	0.738	DOWNSTREAM CR43412 INTERGENIC
3R	18040350	3R_18040350_SNP [dm3] 3R_22214628_SNP [dm6]	C	A	2.089e^-4	0.738	NON_SYNONYMOUS_CODING Gld2 INTRON SKIP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	13226861	3L_13226861_SNP [dm3] 3L_13233761_SNP [dm6]	T	A	2.090e^-4	0.738	INTRON caps
3R	26444239	3R_26444239_SNP [dm3] 3R_30618517_SNP [dm6]	C	T	2.094e^-4	0.738	DOWNSTREAM CG44954 INTERGENIC
X	9341644	X_9341644_SNP [dm3] X_9447611_SNP [dm6]	T	C	2.096e^-4	0.738	INTRON mgl	TF binding site BDTNP1_TFBS_dl
2L	7051473	2L_7051473_SNP [dm3] 2L_7051473_SNP [dm6]	G	A	2.096e^-4	0.738	SYNONYMOUS_CODING milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	3052399	2R_3052399_SNP [dm3] 2R_7164894_SNP [dm6]	G	C	2.097e^-4	0.738	INTRON pk
3R	14621175	3R_14621175_SNP [dm3] 3R_18795453_SNP [dm6]	A	T	2.102e^-4	0.738	UPSTREAM CG7720 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	23226205	3R_23226205_SNP [dm3] 3R_27400483_SNP [dm6]	T	C	2.105e^-4	0.738	INTRON side
3L	2657915	3L_2657915_INS [dm3] 3L_2657915_INS [dm6]	A	AT	2.110e^-4	0.738	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12865133	2L_12865133_SNP [dm3] 2L_12865133_SNP [dm6]	T	A	2.110e^-4	0.738	INTERGENIC
2L	17740022	2L_17740022_SNP [dm3] 2L_17740022_SNP [dm6]	G	A	2.111e^-4	0.738	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	19075960	3R_19075960_SNP [dm3] 3R_23250238_SNP [dm6]	T	C	2.113e^-4	0.738	INTRON CG4449
X	8261617	X_8261617_SNP [dm3] X_8367584_SNP [dm6]	T	G	2.126e^-4	0.738	UPSTREAM nAChRalpha3 INTERGENIC
3L	9133946	3L_9133946_SNP [dm3] 3L_9140846_SNP [dm6]	C	A	2.130e^-4	0.738	SPLICE_SITE_REGION nwk INTRON nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18408304	2R_18408304_SNP [dm3] 2R_22520799_SNP [dm6]	A	G	2.138e^-4	0.738	INTRON px	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6269649	X_6269649_SNP [dm3] X_6375616_SNP [dm6]	C	A	2.146e^-4	0.738	INTERGENIC
2L	14549753	2L_14549753_SNP [dm3] 2L_14549753_SNP [dm6]	C	A	2.147e^-4	0.738	UPSTREAM CG4218 DOWNSTREAM CR44853 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	10059682	X_10059682_INS [dm3] X_10165649_INS [dm6]	A	ACTTTCATATTCAA...	2.149e^-4	0.738	INTRON CR44894 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	10059689	X_10059689_SNP [dm3] X_10165656_SNP [dm6]	T	C	2.149e^-4	0.738	INTRON CR44894 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8156411	3R_8156411_SNP [dm3] 3R_12330689_SNP [dm6]	A	G	2.155e^-4	0.738	DOWNSTREAM CR45583 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10412319	3L_10412319_SNP [dm3] 3L_10419219_SNP [dm6]	T	C	2.156e^-4	0.738	INTERGENIC
3R	23435030	3R_23435030_SNP [dm3] 3R_27609308_SNP [dm6]	A	C	2.158e^-4	0.738	INTRON Tusp
2R	7072540	2R_7072540_SNP [dm3] 2R_11185035_SNP [dm6]	A	G	2.162e^-4	0.738	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	841675	3L_841675_SNP [dm3] 3L_841675_SNP [dm6]	A	G	2.167e^-4	0.738	UTR_5_PRIME Gr61a UPSTREAM CG13902
3L	841691	3L_841691_SNP [dm3] 3L_841691_SNP [dm6]	A	G	2.167e^-4	0.738	UTR_5_PRIME Gr61a UPSTREAM CG13902	insulator Insulator_Class_I.mE01
2L	3455386	2L_3455386_SNP [dm3] 2L_3455386_SNP [dm6]	T	A	2.169e^-4	0.738	SYNONYMOUS_CODING Cog3
X	21498669	X_21498669_SNP [dm3] X_21627642_SNP [dm6]	T	C	2.177e^-4	0.738	INTRON DIP1	transposable element FlyBase
X	20849412	X_20849412_SNP [dm3] X_20978385_SNP [dm6]	C	T	2.187e^-4	0.738	NON_SYNONYMOUS_CODING CG44426
X	19076468	X_19076468_SNP [dm3] X_19182435_SNP [dm6]	G	T	2.194e^-4	0.738	UPSTREAM CG33253 DOWNSTREAM CG7453 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13261352	2L_13261352_SNP [dm3] 2L_13261352_SNP [dm6]	G	A	2.194e^-4	0.738	UTR_5_PRIME CG44085 INTRON CG44085
2R	14546827	2R_14546827_SNP [dm3] 2R_18659322_SNP [dm6]	G	T	2.196e^-4	0.738	SYNONYMOUS_CODING Gint3 UTR_3_PRIME CG42306	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25283779	3R_25283779_DEL [dm3] 3R_29458057_DEL [dm6]	TT	T	2.200e^-4	0.738	DOWNSTREAM CR44022 INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	18123839	2R_18123839_SNP [dm3] 2R_22236334_SNP [dm6]	T	A	2.203e^-4	0.738	EXON CR44755
3L	21657367	3L_21657367_SNP [dm3] 3L_21664267_SNP [dm6]	G	A	2.205e^-4	0.738	SYNONYMOUS_CODING CG43980	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16619531	2L_16619531_SNP [dm3] 2L_16619531_SNP [dm6]	G	A	2.207e^-4	0.738	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	16128019	X_16128019_SNP [dm3] X_16233986_SNP [dm6]	T	C	2.207e^-4	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15120517	3R_15120517_SNP [dm3] 3R_19294795_SNP [dm6]	A	T	2.215e^-4	0.739	INTERGENIC
3R	3840730	3R_3840730_SNP [dm3] 3R_8015008_SNP [dm6]	C	T	2.224e^-4	0.74	INTRON Pbp95
3R	21914519	3R_21914519_SNP [dm3] 3R_26088797_SNP [dm6]	G	T	2.231e^-4	0.74	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	16737379	X_16737379_SNP [dm3] X_16843346_SNP [dm6]	A	G	2.232e^-4	0.74	SYNONYMOUS_CODING RSG7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	726710	2L_726710_SNP [dm3] 2L_726710_SNP [dm6]	T	C	2.233e^-4	0.74	INTERGENIC
2L	2945893	2L_2945893_INS [dm3] 2L_2945893_INS [dm6]	C	CTAC	2.238e^-4	0.74	UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15885954	2L_15885954_SNP [dm3] 2L_15885954_SNP [dm6]	G	C	2.254e^-4	0.74	INTERGENIC
2L	6355871	2L_6355871_SNP [dm3] 2L_6355871_SNP [dm6]	T	C	2.262e^-4	0.74	INTRON ppk14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14570769	2R_14570769_INS [dm3] 2R_18683264_INS [dm6]	G	GCAAAGGTTGAGG...	2.266e^-4	0.74	CODON_INSERTION CG44434 UTR_5_PRIME CG44435 DOWNSTREAM CG44433	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20890565	X_20890565_SNP [dm3] X_21019538_SNP [dm6]	T	A	2.280e^-4	0.74	INTERGENIC
3L	7087041	3L_7087041_SNP [dm3] 3L_7093941_SNP [dm6]	A	C	2.284e^-4	0.74	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16496178	2R_16496178_SNP [dm3] 2R_20608673_SNP [dm6]	T	C	2.285e^-4	0.74	INTRON Hil	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2789239	2R_2789239_SNP [dm3] 2R_6901734_SNP [dm6]	G	A	2.286e^-4	0.74	INTRON CG30158
2R	9424089	2R_9424089_SNP [dm3] 2R_13536584_SNP [dm6]	A	T	2.287e^-4	0.74	UPSTREAM tRNA:K2:50C DOWNSTREAM CG6145 INTERGENIC
3R	10039195	3R_10039195_SNP [dm3] 3R_14213473_SNP [dm6]	G	C	2.300e^-4	0.74	INTRON Dop1R1
3R	13204206	3R_13204206_SNP [dm3] 3R_17378484_SNP [dm6]	G	A	2.300e^-4	0.74	INTRON Brf
X	20286667	X_20286667_SNP [dm3] X_20415640_SNP [dm6]	A	G	2.304e^-4	0.74	UPSTREAM Obp19a INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16784677	X_16784677_SNP [dm3] X_16890644_SNP [dm6]	G	T	2.305e^-4	0.74	DOWNSTREAM CG13002 INTERGENIC
2L	13261358	2L_13261358_SNP [dm3] 2L_13261358_SNP [dm6]	G	A	2.314e^-4	0.74	UTR_5_PRIME CG44085 INTRON CG44085
X	17859005	X_17859005_SNP [dm3] X_17964972_SNP [dm6]	T	C	2.316e^-4	0.74	INTRON Sh
2L	3412870	2L_3412870_SNP [dm3] 2L_3412870_SNP [dm6]	C	T	2.320e^-4	0.74	INTRON pgant2
3L	10981999	3L_10981999_SNP [dm3] 3L_10988899_SNP [dm6]	T	G	2.321e^-4	0.74	INTRON klu
3R	10987460	3R_10987460_SNP [dm3] 3R_15161738_SNP [dm6]	T	C	2.332e^-4	0.74	INTRON Gyc88E	TF binding site BDTNP1_TFBS_twi
2R	9329035	2R_9329035_SNP [dm3] 2R_13441530_SNP [dm6]	G	C	2.343e^-4	0.74	SYNONYMOUS_CODING cnn	TF binding site mE1_TFBS_cad
2L	5989288	2L_5989288_INS [dm3] 2L_5989288_INS [dm6]	A	ACCGACTGA	2.349e^-4	0.74	DOWNSTREAM lid & 1 other INTERGENIC
3L	10600492	3L_10600492_SNP [dm3] 3L_10607392_SNP [dm6]	T	A	2.355e^-4	0.74	INTERGENIC
3L	11342938	3L_11342938_SNP [dm3] 3L_11349838_SNP [dm6]	T	C	2.356e^-4	0.74	UPSTREAM CR45251 INTERGENIC
2L	6309665	2L_6309665_SNP [dm3] 2L_6309665_SNP [dm6]	C	A	2.371e^-4	0.74	UPSTREAM CG43922 DOWNSTREAM CG13984 INTRON Ddr
X	16438624	X_16438624_SNP [dm3] X_16544591_SNP [dm6]	G	T	2.379e^-4	0.74	SYNONYMOUS_CODING CG9902
2L	6021213	2L_6021213_SNP [dm3] 2L_6021213_SNP [dm6]	A	C	2.389e^-4	0.74	INTRON CG13996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9362482	2L_9362482_INS [dm3] 2L_9362482_INS [dm6]	A	ACAC	2.392e^-4	0.74	INTERGENIC
2L	9362484	2L_9362484_SNP [dm3] 2L_9362484_SNP [dm6]	G	T	2.392e^-4	0.74	INTERGENIC
3L	3316209	3L_3316209_SNP [dm3] 3L_3316209_SNP [dm6]	T	A	2.397e^-4	0.74	UPSTREAM Drsl5 DOWNSTREAM Drsl3 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10279189	2R_10279189_SNP [dm3] 2R_14391684_SNP [dm6]	A	C	2.398e^-4	0.74	SYNONYMOUS_CODING CG10104	TF binding site mE1_TFBS_cad
2L	6355770	2L_6355770_SNP [dm3] 2L_6355770_SNP [dm6]	G	A	2.399e^-4	0.74	SYNONYMOUS_CODING ppk14	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	7162992	2L_7162992_SNP [dm3] 2L_7162992_SNP [dm6]	C	A	2.403e^-4	0.74	INTERGENIC
X	21498688	X_21498688_SNP [dm3] X_21627661_SNP [dm6]	A	T	2.404e^-4	0.74	INTRON DIP1	transposable element FlyBase
X	21498689	X_21498689_SNP [dm3] X_21627662_SNP [dm6]	G	C	2.404e^-4	0.74	INTRON DIP1	transposable element FlyBase
2L	18019460	2L_18019460_SNP [dm3] 2L_18019460_SNP [dm6]	A	C	2.405e^-4	0.74	INTRON rdo
X	21495148	X_21495148_SNP [dm3] X_21624121_SNP [dm6]	A	T	2.413e^-4	0.74	UPSTREAM CG32500 DOWNSTREAM DIP1 INTERGENIC	transposable element FlyBase
X	21476782	X_21476782_SNP [dm3] X_21605755_SNP [dm6]	A	G	2.414e^-4	0.74	UPSTREAM CG14476 DOWNSTREAM CG17450 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	11158980	X_11158980_SNP [dm3] X_11264947_SNP [dm6]	G	A	2.428e^-4	0.74	INTRON CG44422	TF binding site mE1_TFBS_inv
X	11158993	X_11158993_SNP [dm3] X_11264960_SNP [dm6]	A	G	2.428e^-4	0.74	INTRON CG44422	TF binding site mE1_TFBS_inv
3L	4611702	3L_4611702_DEL [dm3] 3L_4611702_DEL [dm6]	AG	A	2.433e^-4	0.74	INTRON Src64B	TF binding site BDTNP1_TFBS_twi
3L	7087049	3L_7087049_SNP [dm3] 3L_7093949_SNP [dm6]	T	G	2.441e^-4	0.74	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10690901	2R_10690901_SNP [dm3] 2R_14803396_SNP [dm6]	T	A	2.444e^-4	0.74	INTRON kn	regulatory region REDfly_CRMs
2L	15863502	2L_15863502_SNP [dm3] 2L_15863502_SNP [dm6]	C	T	2.450e^-4	0.74	EXON CR42791
3L	12006840	3L_12006840_SNP [dm3] 3L_12013740_SNP [dm6]	T	A	2.451e^-4	0.74	INTRON rols
3R	7880819	3R_7880819_SNP [dm3] 3R_12055097_SNP [dm6]	C	T	2.455e^-4	0.74	INTERGENIC
2R	12808012	2R_12808012_SNP [dm3] 2R_16920507_SNP [dm6]	A	G	2.461e^-4	0.74	INTERGENIC
2R	19567857	2R_19567857_SNP [dm3] 2R_23680334_SNP [dm6]	G	C	2.465e^-4	0.74	UTR_3_PRIME Pde8 DOWNSTREAM Pde8
X	5328646	X_5328646_SNP [dm3] X_5434613_SNP [dm6]	G	C	2.471e^-4	0.74	INTRON CR44471
2L	10474889	2L_10474889_SNP [dm3] 2L_10474889_SNP [dm6]	C	T	2.472e^-4	0.74	UPSTREAM RluA-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	20203137	2R_20203137_SNP [dm3] 2R_24315614_SNP [dm6]	G	T	2.476e^-4	0.74	INTERGENIC
X	19975743	X_19975743_SNP [dm3] X_20081710_SNP [dm6]	A	T	2.478e^-4	0.74	INTERGENIC
2R	2777393	2R_2777393_SNP [dm3] 2R_6889888_SNP [dm6]	C	T	2.498e^-4	0.74	INTERGENIC
3L	10641101	3L_10641101_SNP [dm3] 3L_10648001_SNP [dm6]	T	G	2.499e^-4	0.74	INTRON CG32066
3L	1457496	3L_1457496_SNP [dm3] 3L_1457496_SNP [dm6]	G	C	2.502e^-4	0.74	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	9654537	2R_9654537_SNP [dm3] 2R_13767032_SNP [dm6]	G	C	2.510e^-4	0.74	INTERGENIC
X	11350237	X_11350237_SNP [dm3] X_11456204_SNP [dm6]	G	A	2.518e^-4	0.74	SYNONYMOUS_CODING HP5	TF binding site mE1_TFBS_sens
2L	3479916	2L_3479916_SNP [dm3] 2L_3479916_SNP [dm6]	C	T	2.523e^-4	0.74	DOWNSTREAM Thor & 1 other INTERGENIC
X	7431130	X_7431130_SNP [dm3] X_7537097_SNP [dm6]	C	G	2.526e^-4	0.74	UPSTREAM CG32720 INTRON CG32719	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
3L	3928379	3L_3928379_DEL [dm3] 3L_3928379_DEL [dm6]	AA	A	2.529e^-4	0.74	INTRON Eip63F-1
3L	5888029	3L_5888029_SNP [dm3] 3L_5894929_SNP [dm6]	G	A	2.531e^-4	0.74	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2486093	2R_2486093_SNP [dm3] 2R_6598588_SNP [dm6]	G	A	2.532e^-4	0.74	INTRON jing	TF binding site mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	9680234	2R_9680234_DEL [dm3] 2R_13792729_DEL [dm6]	TTT	T	2.538e^-4	0.74	DOWNSTREAM CR43811 INTERGENIC
2L	10091945	2L_10091945_SNP [dm3] 2L_10091945_SNP [dm6]	C	T	2.544e^-4	0.74	SYNONYMOUS_CODING CG13133 INTRON CG44153	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12532332	3L_12532332_DEL [dm3] 3L_12539232_DEL [dm6]	TT	T	2.544e^-4	0.74	DOWNSTREAM sowah INTRON sowah
3R	21369833	3R_21369833_SNP [dm3] 3R_25544111_SNP [dm6]	A	C	2.549e^-4	0.74	INTRON msi	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1658125	3L_1658125_SNP [dm3] 3L_1658125_SNP [dm6]	C	T	2.554e^-4	0.74	SYNONYMOUS_CODING CG7971
3R	15466061	3R_15466061_SNP [dm3] 3R_19640339_SNP [dm6]	C	T	2.555e^-4	0.74	INTRON subdued
2R	11716290	2R_11716290_INS [dm3] 2R_15828785_INS [dm6]	G	GCGG	2.559e^-4	0.74	INTRON tun & 1 other
2R	16930845	2R_16930845_DEL [dm3] 2R_21043340_DEL [dm6]	TT	C	2.560e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16540283	2L_16540283_SNP [dm3] 2L_16540283_SNP [dm6]	A	T	2.570e^-4	0.74	INTERGENIC
3R	11764586	3R_11764586_SNP [dm3] 3R_15938864_SNP [dm6]	A	T	2.571e^-4	0.74	INTRON Sap47
2R	19059840	2R_19059840_SNP [dm3] 2R_23172317_SNP [dm6]	A	C	2.574e^-4	0.74	INTRON CG34371	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10318933	2R_10318933_SNP [dm3] 2R_14431428_SNP [dm6]	T	G	2.578e^-4	0.74	INTRON phyl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13938609	2L_13938609_SNP [dm3] 2L_13938609_SNP [dm6]	C	T	2.581e^-4	0.74	INTRON Ance-3
2L	5479349	2L_5479349_SNP [dm3] 2L_5479349_SNP [dm6]	G	A	2.586e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_cad
3R	13275662	3R_13275662_INS [dm3] 3R_17449940_INS [dm6]	C	CC	2.595e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	12869953	2L_12869953_SNP [dm3] 2L_12869953_SNP [dm6]	G	A	2.598e^-4	0.74	INTERGENIC
X	16873287	X_16873287_DEL [dm3] X_16979254_DEL [dm6]	TT	T	2.626e^-4	0.74	INTRON CG45002
2R	9761886	2R_9761886_SNP [dm3] 2R_13874381_SNP [dm6]	G	C	2.629e^-4	0.74	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
X	2263737	X_2263737_SNP [dm3] X_2369704_SNP [dm6]	A	G	2.630e^-4	0.74	INTRON PsGEF	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7914134	2R_7914134_SNP [dm3] 2R_12026629_SNP [dm6]	C	T	2.631e^-4	0.74	INTRON Mppe	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3186481	X_3186481_SNP [dm3] X_3292448_SNP [dm6]	T	G	2.631e^-4	0.74	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13224628	3L_13224628_SNP [dm3] 3L_13231528_SNP [dm6]	T	C	2.632e^-4	0.74	INTRON caps
2L	15901991	2L_15901991_SNP [dm3] 2L_15901991_SNP [dm6]	G	A	2.633e^-4	0.74	SYNONYMOUS_CODING CG31821	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12537506	3R_12537506_SNP [dm3] 3R_16711784_SNP [dm6]	A	G	2.637e^-4	0.74	INTRON Ubx	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3456858	2L_3456858_DEL [dm3] 2L_3456858_DEL [dm6]	GGAG	G	2.660e^-4	0.74	UPSTREAM Sec5 INTRON Cog3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	15868973	2L_15868973_SNP [dm3] 2L_15868973_SNP [dm6]	G	A	2.664e^-4	0.74	INTERGENIC
2L	10571915	2L_10571915_SNP [dm3] 2L_10571915_SNP [dm6]	C	T	2.668e^-4	0.74	INTRON Trim9
2R	11716293	2R_11716293_SNP [dm3] 2R_15828788_SNP [dm6]	C	T	2.672e^-4	0.74	INTRON tun & 1 other
2R	11651590	2R_11651590_SNP [dm3] 2R_15764085_SNP [dm6]	G	C	2.673e^-4	0.74	NON_SYNONYMOUS_CODING Zasp52 INTRON Zasp52
3L	7087053	3L_7087053_SNP [dm3] 3L_7093953_SNP [dm6]	C	T	2.675e^-4	0.74	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7087080	3L_7087080_SNP [dm3] 3L_7093980_SNP [dm6]	C	T	2.675e^-4	0.74	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	7524460	3R_7524460_SNP [dm3] 3R_11698738_SNP [dm6]	A	G	2.680e^-4	0.74	DOWNSTREAM CG14717 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
3R	11064305	3R_11064305_SNP [dm3] 3R_15238583_SNP [dm6]	G	A	2.681e^-4	0.74	INTRON tefu
3L	1888682	3L_1888682_SNP [dm3] 3L_1888682_SNP [dm6]	A	C	2.688e^-4	0.74	UPSTREAM Tmhs INTRON Tmhs	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	3952540	2L_3952540_SNP [dm3] 2L_3952540_SNP [dm6]	G	T	2.695e^-4	0.74	INTRON fred
2L	13938588	2L_13938588_SNP [dm3] 2L_13938588_SNP [dm6]	G	T	2.701e^-4	0.74	INTRON Ance-3
X	19790878	X_19790878_SNP [dm3] X_19896845_SNP [dm6]	T	G	2.702e^-4	0.74	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	16487135	3R_16487135_SNP [dm3] 3R_20661413_SNP [dm6]	T	A	2.703e^-4	0.74	INTERGENIC
3R	26196954	3R_26196954_DEL [dm3] 3R_30371232_DEL [dm6]	AAA	A	2.704e^-4	0.74	UTR_3_PRIME hdc
X	14061885	X_14061885_SNP [dm3] X_14167852_SNP [dm6]	G	A	2.706e^-4	0.74	INTERGENIC
2R	19567841	2R_19567841_DEL [dm3] 2R_23680318_DEL [dm6]	CCACCACCC	C	2.707e^-4	0.74	UTR_3_PRIME Pde8 DOWNSTREAM Pde8
2R	14180340	2R_14180340_SNP [dm3] 2R_18292835_SNP [dm6]	A	C	2.710e^-4	0.74	UTR_5_PRIME CG14502 INTRON CG14502 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20102778	2L_20102778_SNP [dm3] 2L_20102778_SNP [dm6]	T	G	2.715e^-4	0.74	UTR_3_PRIME Kua DOWNSTREAM CG13970
X	20321649	X_20321649_SNP [dm3] X_20450622_SNP [dm6]	T	A	2.715e^-4	0.74	INTRON CG32506
X	20321651	X_20321651_SNP [dm3] X_20450624_SNP [dm6]	C	T	2.715e^-4	0.74	INTRON CG32506
2L	1391395	2L_1391395_SNP [dm3] 2L_1391395_SNP [dm6]	G	T	2.718e^-4	0.74	SYNONYMOUS_CODING lea	TF binding site mE1_TFBS_sens
3R	4952992	3R_4952992_SNP [dm3] 3R_9127270_SNP [dm6]	T	C	2.719e^-4	0.74	INTRON pum	TF binding site BDTNP1_TFBS_dl
2R	13770861	2R_13770861_SNP [dm3] 2R_17883356_SNP [dm6]	G	A	2.720e^-4	0.74	INTRON Elk
2R	9459505	2R_9459505_SNP [dm3] 2R_13572000_SNP [dm6]	C	T	2.723e^-4	0.74	INTRON CG42807	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11481816	3L_11481816_DEL [dm3] 3L_11488716_DEL [dm6]	AAC	T	2.738e^-4	0.74	INTRON chrb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	12772685	3L_12772685_SNP [dm3] 3L_12779585_SNP [dm6]	G	A	2.740e^-4	0.74	SYNONYMOUS_CODING CG10969 UPSTREAM CG32106	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6021187	2L_6021187_SNP [dm3] 2L_6021187_SNP [dm6]	T	A	2.747e^-4	0.74	INTRON CG13996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7086968	3L_7086968_SNP [dm3] 3L_7093868_SNP [dm6]	T	C	2.748e^-4	0.74	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6573214	3L_6573214_SNP [dm3] 3L_6580114_SNP [dm6]	C	G	2.753e^-4	0.74	INTRON CG18769 & 1 other
2R	9652173	2R_9652173_SNP [dm3] 2R_13764668_SNP [dm6]	T	G	2.762e^-4	0.74	INTERGENIC
X	10051883	X_10051883_SNP [dm3] X_10157850_SNP [dm6]	G	C	2.767e^-4	0.74	UPSTREAM CG43902 INTRON CR44894
2L	11411124	2L_11411124_SNP [dm3] 2L_11411124_SNP [dm6]	T	G	2.771e^-4	0.74	INTERGENIC	regulatory region REDfly_CRMs
2L	5885789	2L_5885789_SNP [dm3] 2L_5885789_SNP [dm6]	T	C	2.775e^-4	0.74	UPSTREAM CG9029 DOWNSTREAM CG43185 INTERGENIC
2L	22596050	2L_22596050_SNP [dm3] 2L_22703318_SNP [dm6]	A	G	2.777e^-4	0.74	INTRON CG40006
2R	13355169	2R_13355169_SNP [dm3] 2R_17467664_SNP [dm6]	C	T	2.779e^-4	0.74	SYNONYMOUS_CODING Tes	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11808570	2R_11808570_SNP [dm3] 2R_15921065_SNP [dm6]	T	A	2.781e^-4	0.74	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11808574	2R_11808574_INS [dm3] 2R_15921069_INS [dm6]	A	ACA	2.781e^-4	0.74	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7230270	3L_7230270_SNP [dm3] 3L_7237170_SNP [dm6]	A	T	2.781e^-4	0.74	UTR_3_PRIME CG14829
2R	11729003	2R_11729003_SNP [dm3] 2R_15841498_SNP [dm6]	A	T	2.810e^-4	0.74	INTRON tun	regulatory region REDfly_CRMs
2R	10279408	2R_10279408_SNP [dm3] 2R_14391903_SNP [dm6]	G	A	2.817e^-4	0.74	SYNONYMOUS_CODING CG10104	TF binding site mE1_TFBS_cad
3R	21694575	3R_21694575_SNP [dm3] 3R_25868853_SNP [dm6]	C	T	2.818e^-4	0.74	INTRON CG5890
3L	7825741	3L_7825741_SNP [dm3] 3L_7832641_SNP [dm6]	A	G	2.831e^-4	0.74	UTR_5_PRIME Pdp1 INTRON Pdp1
3R	26124526	3R_26124526_SNP [dm3] 3R_30298804_SNP [dm6]	A	G	2.842e^-4	0.74	INTRON hdc
2L	15863567	2L_15863567_SNP [dm3] 2L_15863567_SNP [dm6]	C	G	2.842e^-4	0.74	EXON CR42791
2L	6021246	2L_6021246_SNP [dm3] 2L_6021246_SNP [dm6]	A	G	2.862e^-4	0.74	SYNONYMOUS_CODING CG13996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12865145	2L_12865145_SNP [dm3] 2L_12865145_SNP [dm6]	C	A	2.864e^-4	0.74	INTERGENIC
2L	12865147	2L_12865147_SNP [dm3] 2L_12865147_SNP [dm6]	T	A	2.864e^-4	0.74	INTERGENIC
2L	12865150	2L_12865150_SNP [dm3] 2L_12865150_SNP [dm6]	G	A	2.864e^-4	0.74	INTERGENIC
2R	14162118	2R_14162118_SNP [dm3] 2R_18274613_SNP [dm6]	T	A	2.865e^-4	0.74	DOWNSTREAM Ote INTERGENIC
2L	15825267	2L_15825267_SNP [dm3] 2L_15825267_SNP [dm6]	T	A	2.872e^-4	0.74	INTERGENIC
2R	7897360	2R_7897360_SNP [dm3] 2R_12009855_SNP [dm6]	C	G	2.875e^-4	0.74	INTRON otk	regulatory region REDfly_CRMs
3L	11343270	3L_11343270_SNP [dm3] 3L_11350170_SNP [dm6]	T	C	2.875e^-4	0.74	UPSTREAM CR45251 INTERGENIC
X	8826708	X_8826708_SNP [dm3] X_8932675_SNP [dm6]	A	T	2.878e^-4	0.74	INTRON rdgA
3L	5954762	3L_5954762_SNP [dm3] 3L_5961662_SNP [dm6]	T	C	2.878e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	10746032	3R_10746032_SNP [dm3] 3R_14920310_SNP [dm6]	C	T	2.879e^-4	0.74	SPLICE_SITE_REGION Sdr INTRON Sdr
3L	518330	3L_518330_DEL [dm3] 3L_518330_DEL [dm6]	GAG	G	2.879e^-4	0.74	INTRON klar	TF binding site BDTNP1_TFBS_twi
3R	15072750	3R_15072750_SNP [dm3] 3R_19247028_SNP [dm6]	C	G	2.894e^-4	0.74	UPSTREAM unc79 DOWNSTREAM CG5217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16738334	X_16738334_DEL [dm3] X_16844301_DEL [dm6]	TT	T	2.908e^-4	0.74	UTR_5_PRIME RSG7 DOWNSTREAM CG13003	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	1656733	3L_1656733_SNP [dm3] 3L_1656733_SNP [dm6]	C	T	2.912e^-4	0.74	SYNONYMOUS_CODING CG7971	TF binding site mE1_TFBS_chinmo
2L	14008341	2L_14008341_SNP [dm3] 2L_14008341_SNP [dm6]	G	A	2.914e^-4	0.74	INTRON CG42692
2R	9649490	2R_9649490_DEL [dm3] 2R_13761985_DEL [dm6]	AG	A	2.918e^-4	0.74	INTERGENIC
3L	21755329	3L_21755329_SNP [dm3] 3L_21762229_SNP [dm6]	A	G	2.926e^-4	0.74	INTRON Syn1
X	21916313	X_21916313_SNP [dm3] X_22514477_SNP [dm6]	C	G	2.929e^-4	0.74	UPSTREAM CG17600 DOWNSTREAM CR43962 EXON CR43962
X	8592155	X_8592155_SNP [dm3] X_8698122_SNP [dm6]	A	T	2.933e^-4	0.74	INTERGENIC
2R	9940426	2R_9940426_SNP [dm3] 2R_14052921_SNP [dm6]	T	C	2.934e^-4	0.74	INTRON mam
3L	483861	3L_483861_SNP [dm3] 3L_483861_SNP [dm6]	C	T	2.941e^-4	0.74	INTRON klar
3L	9425671	3L_9425671_SNP [dm3] 3L_9432571_SNP [dm6]	G	A	2.946e^-4	0.74	INTRON MTF-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	12530523	3L_12530523_INS [dm3] 3L_12537423_INS [dm6]	T	TATA	2.948e^-4	0.74	UPSTREAM CG4069 DOWNSTREAM sowah INTERGENIC
2L	1060519	2L_1060519_SNP [dm3] 2L_1060519_SNP [dm6]	G	A	2.951e^-4	0.74	INTRON S
X	20328978	X_20328978_SNP [dm3] X_20457951_SNP [dm6]	G	T	2.952e^-4	0.74	INTRON CG32506
X	20329496	X_20329496_SNP [dm3] X_20458469_SNP [dm6]	G	T	2.952e^-4	0.74	INTRON CG32506	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26177032	3R_26177032_SNP [dm3] 3R_30351310_SNP [dm6]	G	C	2.954e^-4	0.74	INTRON hdc
3L	8743277	3L_8743277_SNP [dm3] 3L_8750177_SNP [dm6]	C	A	2.958e^-4	0.74	UPSTREAM CG13306 INTERGENIC
X	21132733	X_21132733_SNP [dm3] X_21261706_SNP [dm6]	C	T	2.962e^-4	0.74	INTRON CG32521
2L	1530181	2L_1530181_SNP [dm3] 2L_1530181_SNP [dm6]	A	C	2.965e^-4	0.74	INTERGENIC
3R	24133774	3R_24133774_SNP [dm3] 3R_28308052_SNP [dm6]	T	A	2.965e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15098313	2L_15098313_SNP [dm3] 2L_15098313_SNP [dm6]	A	G	2.965e^-4	0.74	INTERGENIC
2L	16213159	2L_16213159_SNP [dm3] 2L_16213159_SNP [dm6]	T	C	2.966e^-4	0.74	SYNONYMOUS_CODING CG31819	TF binding site BDTNP1_TFBS_twi
2L	17746577	2L_17746577_SNP [dm3] 2L_17746577_SNP [dm6]	A	C	2.968e^-4	0.74	INTRON CadN	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
2L	1197205	2L_1197205_SNP [dm3] 2L_1197205_SNP [dm6]	T	A	2.971e^-4	0.74	DOWNSTREAM CG5001 INTERGENIC
2R	1385699	2R_1385699_SNP [dm3] 2R_5498194_SNP [dm6]	A	C	2.975e^-4	0.74	INTRON CG30438	transposable element FlyBase
2R	12218516	2R_12218516_SNP [dm3] 2R_16331011_SNP [dm6]	C	T	2.981e^-4	0.74	INTRON Vha44	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	16738343	X_16738343_SNP [dm3] X_16844310_SNP [dm6]	G	A	2.981e^-4	0.74	UTR_5_PRIME RSG7 DOWNSTREAM CG13003	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	6700388	2L_6700388_SNP [dm3] 2L_6700388_SNP [dm6]	C	T	2.982e^-4	0.74	SYNONYMOUS_CODING Tsp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	12556685	3R_12556685_SNP [dm3] 3R_16730963_SNP [dm6]	G	T	2.983e^-4	0.74	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	16428380	2R_16428380_SNP [dm3] 2R_20540875_SNP [dm6]	T	G	2.991e^-4	0.74	UPSTREAM CG13428 EXON CR44652	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	18754802	X_18754802_SNP [dm3] X_18860769_SNP [dm6]	T	C	2.995e^-4	0.74	SYNONYMOUS_CODING CG32544 DOWNSTREAM CG7288 & 1 other	TF binding site mE1_TFBS_chinmo
X	8387740	X_8387740_SNP [dm3] X_8493707_SNP [dm6]	A	G	2.995e^-4	0.74	INTRON CG33181
2L	14744082	2L_14744082_SNP [dm3] 2L_14744082_SNP [dm6]	T	A	2.996e^-4	0.74	UPSTREAM CG42681 DOWNSTREAM CG34166 & 1 other INTERGENIC
2L	14744108	2L_14744108_SNP [dm3] 2L_14744108_SNP [dm6]	A	C	2.996e^-4	0.74	UPSTREAM CG42681 DOWNSTREAM CG34166 & 1 other INTERGENIC
3L	3985198	3L_3985198_SNP [dm3] 3L_3985198_SNP [dm6]	C	T	2.996e^-4	0.74	SYNONYMOUS_CODING scrt
2R	5349944	2R_5349944_SNP [dm3] 2R_9462439_SNP [dm6]	A	G	3.009e^-4	0.74	INTRON Camta
3R	22563178	3R_22563178_SNP [dm3] 3R_26737456_SNP [dm6]	A	G	3.010e^-4	0.74	UPSTREAM CG14247 INTERGENIC
2L	4297080	2L_4297080_SNP [dm3] 2L_4297080_SNP [dm6]	C	A	3.013e^-4	0.74	INTRON tutl
X	6451744	X_6451744_SNP [dm3] X_6557711_SNP [dm6]	C	A	3.018e^-4	0.74	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
2L	847107	2L_847107_SNP [dm3] 2L_847107_SNP [dm6]	T	C	3.020e^-4	0.74	INTRON drongo
2R	10517021	2R_10517021_SNP [dm3] 2R_14629516_SNP [dm6]	C	A	3.021e^-4	0.74	UPSTREAM CG10131 INTERGENIC
3L	21666718	3L_21666718_SNP [dm3] 3L_21673618_SNP [dm6]	C	T	3.021e^-4	0.74	SYNONYMOUS_CODING CG11249 DOWNSTREAM CG7158	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16601275	X_16601275_SNP [dm3] X_16707242_SNP [dm6]	G	A	3.026e^-4	0.74	UPSTREAM CG9672 INTRON CG4678
X	16601284	X_16601284_SNP [dm3] X_16707251_SNP [dm6]	A	G	3.026e^-4	0.74	UPSTREAM CG9672 INTRON CG4678
2L	6581253	2L_6581253_SNP [dm3] 2L_6581253_SNP [dm6]	T	G	3.028e^-4	0.74	INTRON CG11319
3R	14999079	3R_14999079_SNP [dm3] 3R_19173357_SNP [dm6]	G	C	3.032e^-4	0.74	INTERGENIC
X	3186466	X_3186466_SNP [dm3] X_3292433_SNP [dm6]	A	G	3.035e^-4	0.74	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14373419	3R_14373419_SNP [dm3] 3R_18547697_SNP [dm6]	G	A	3.036e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14495643	2L_14495643_SNP [dm3] 2L_14495643_SNP [dm6]	A	G	3.042e^-4	0.74	UPSTREAM tRNA:P:35Bd INTERGENIC
2L	15410365	2L_15410365_SNP [dm3] 2L_15410365_SNP [dm6]	C	T	3.043e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	3971316	3L_3971316_SNP [dm3] 3L_3971316_SNP [dm6]	G	A	3.044e^-4	0.74	INTERGENIC
X	21498678	X_21498678_SNP [dm3] X_21627651_SNP [dm6]	C	A	3.045e^-4	0.74	INTRON DIP1	transposable element FlyBase
X	21476448	X_21476448_SNP [dm3] X_21605421_SNP [dm6]	A	T	3.045e^-4	0.74	UPSTREAM CG14476 DOWNSTREAM CG17450 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7056215	2R_7056215_SNP [dm3] 2R_11168710_SNP [dm6]	G	A	3.058e^-4	0.74	INTRON shn & 1 other
2L	14891699	2L_14891699_SNP [dm3] 2L_14891699_SNP [dm6]	T	C	3.062e^-4	0.74	INTERGENIC
X	10059701	X_10059701_SNP [dm3] X_10165668_SNP [dm6]	T	A	3.070e^-4	0.74	INTRON CR44894 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13381488	3L_13381488_SNP [dm3] 3L_13388388_SNP [dm6]	T	A	3.080e^-4	0.74	UTR_3_PRIME Poc1 UPSTREAM CG10171	TF binding site mE1_TFBS_cad
3L	5866921	3L_5866921_SNP [dm3] 3L_5873821_SNP [dm6]	A	C	3.085e^-4	0.74	DOWNSTREAM CG5568 INTRON CG18586
2R	20498208	2R_20498208_SNP [dm3] 2R_24610685_SNP [dm6]	A	T	3.091e^-4	0.74	UTR_3_PRIME CG42360 DOWNSTREAM CG4741
2L	18290464	2L_18290464_SNP [dm3] 2L_18290464_SNP [dm6]	C	T	3.096e^-4	0.74	DOWNSTREAM CG43362 EXON CR44696
X	16784646	X_16784646_SNP [dm3] X_16890613_SNP [dm6]	T	C	3.096e^-4	0.74	SYNONYMOUS_CODING CG13002 UPSTREAM CR43768
2L	13953132	2L_13953132_SNP [dm3] 2L_13953132_SNP [dm6]	A	C	3.098e^-4	0.74	INTRON Ance-3	TF binding site mE1_TFBS_cad
2L	14008436	2L_14008436_SNP [dm3] 2L_14008436_SNP [dm6]	G	A	3.099e^-4	0.74	SPLICE_SITE_DONOR CG42692 NON_SYNONYMOUS_CODING CG42692 INTRON CG42692
3L	11543861	3L_11543861_SNP [dm3] 3L_11550761_SNP [dm6]	T	C	3.100e^-4	0.74	INTRON Mob2	TF binding site mE1_TFBS_Trl
2R	20478934	2R_20478934_SNP [dm3] 2R_24591411_SNP [dm6]	G	A	3.107e^-4	0.74	INTRON pio	TF binding site BDTNP1_TFBS_prd
3R	14373415	3R_14373415_SNP [dm3] 3R_18547693_SNP [dm6]	G	A	3.108e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18775055	3L_18775055_INS [dm3] 3L_18781955_INS [dm6]	T	TACAGAT	3.109e^-4	0.74	INTRON ftz-f1
X	20332042	X_20332042_SNP [dm3] X_20461015_SNP [dm6]	A	T	3.121e^-4	0.74	INTRON CG32506
2L	5115692	2L_5115692_SNP [dm3] 2L_5115692_SNP [dm6]	A	C	3.124e^-4	0.74	INTRON Msp300
X	16738348	X_16738348_SNP [dm3] X_16844315_SNP [dm6]	G	T	3.128e^-4	0.74	UTR_5_PRIME RSG7 DOWNSTREAM CG13003	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	3070082	2R_3070082_SNP [dm3] 2R_7182577_SNP [dm6]	G	A	3.130e^-4	0.74	SYNONYMOUS_CODING CG30385 UPSTREAM CG30384 INTRON pk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	8521742	3L_8521742_SNP [dm3] 3L_8528642_SNP [dm6]	A	G	3.137e^-4	0.74	UPSTREAM foi INTRON foi
3R	10287416	3R_10287416_SNP [dm3] 3R_14461694_SNP [dm6]	A	G	3.139e^-4	0.74	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14972424	3L_14972424_SNP [dm3] 3L_14979324_SNP [dm6]	A	C	3.139e^-4	0.74	UPSTREAM CG3349 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
3R	6897132	3R_6897132_INS [dm3] 3R_11071410_INS [dm6]	C	CC	3.145e^-4	0.74	INTERGENIC
2L	1197202	2L_1197202_SNP [dm3] 2L_1197202_SNP [dm6]	A	T	3.146e^-4	0.74	DOWNSTREAM CG5001 INTERGENIC
2L	6401616	2L_6401616_SNP [dm3] 2L_6401616_SNP [dm6]	A	G	3.148e^-4	0.74	INTRON CG42368
X	20851446	X_20851446_SNP [dm3] X_20980419_SNP [dm6]	T	C	3.153e^-4	0.74	INTERGENIC
2R	6207588	2R_6207588_SNP [dm3] 2R_10320083_SNP [dm6]	T	C	3.176e^-4	0.74	SYNONYMOUS_CODING CG34222 INTRON Ndg
2R	10318006	2R_10318006_SNP [dm3] 2R_14430501_SNP [dm6]	C	G	3.181e^-4	0.74	INTRON phyl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18117108	2R_18117108_SNP [dm3] 2R_22229603_SNP [dm6]	C	G	3.189e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10203327	3L_10203327_INS [dm3] 3L_10210227_INS [dm6]	T	TT	3.194e^-4	0.74	INTERGENIC
2L	20433505	2L_20433505_SNP [dm3] 2L_20433505_SNP [dm6]	G	C	3.194e^-4	0.74	INTRON CG31688
3R	1075512	3R_1075512_SNP [dm3] 3R_5249790_SNP [dm6]	G	A	3.197e^-4	0.74	INTRON CG12163
X	8387769	X_8387769_SNP [dm3] X_8493736_SNP [dm6]	T	A	3.198e^-4	0.74	INTRON CG33181
2L	3477494	2L_3477494_SNP [dm3] 2L_3477494_SNP [dm6]	C	A	3.205e^-4	0.74	UPSTREAM Thor EXON CR43928	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	21707570	3L_21707570_SNP [dm3] 3L_21714470_SNP [dm6]	A	G	3.209e^-4	0.74	INTERGENIC
2R	9459486	2R_9459486_SNP [dm3] 2R_13571981_SNP [dm6]	G	T	3.213e^-4	0.74	INTRON CG42807	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
3R	27454554	3R_27454554_SNP [dm3] 3R_31628832_SNP [dm6]	A	G	3.215e^-4	0.74	INTRON kek6
X	20458391	X_20458391_SNP [dm3] X_20587364_SNP [dm6]	T	G	3.216e^-4	0.74	INTERGENIC
2R	9358790	2R_9358790_SNP [dm3] 2R_13471285_SNP [dm6]	C	G	3.218e^-4	0.74	INTRON arr
3L	12530526	3L_12530526_DEL [dm3] 3L_12537426_DEL [dm6]	GCTC	G	3.223e^-4	0.74	UPSTREAM CG4069 DOWNSTREAM sowah INTERGENIC
3L	9133925	3L_9133925_INS [dm3] 3L_9140825_INS [dm6]	C	AA	3.223e^-4	0.74	INTRON nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11768179	3R_11768179_SNP [dm3] 3R_15942457_SNP [dm6]	C	T	3.227e^-4	0.74	INTRON Sap47
2L	8799982	2L_8799982_SNP [dm3] 2L_8799982_SNP [dm6]	T	G	3.229e^-4	0.74	INTERGENIC
2R	9652017	2R_9652017_SNP [dm3] 2R_13764512_SNP [dm6]	T	A	3.230e^-4	0.74	INTERGENIC
3L	21738344	3L_21738344_SNP [dm3] 3L_21745244_SNP [dm6]	C	T	3.231e^-4	0.74	UPSTREAM CG14565 DOWNSTREAM Syn1 INTERGENIC
3R	18945678	3R_18945678_SNP [dm3] 3R_23119956_SNP [dm6]	G	C	3.234e^-4	0.74	INTRON CenB1A	TF binding site BDTNP1_TFBS_dl
2L	15551037	2L_15551037_SNP [dm3] 2L_15551037_SNP [dm6]	A	C	3.239e^-4	0.74	SPLICE_SITE_REGION CG15256 SYNONYMOUS_CODING CG15256 DOWNSTREAM CR45728
3L	4344590	3L_4344590_SNP [dm3] 3L_4344590_SNP [dm6]	A	T	3.243e^-4	0.74	INTRON Cip4
3L	12008979	3L_12008979_SNP [dm3] 3L_12015879_SNP [dm6]	G	T	3.249e^-4	0.74	INTRON rols	TF binding site BDTNP1_TFBS_da
2R	3962959	2R_3962959_SNP [dm3] 2R_8075454_SNP [dm6]	C	T	3.254e^-4	0.74	UTR_3_PRIME lig INTRON lig
3R	12602945	3R_12602945_SNP [dm3] 3R_16777223_SNP [dm6]	C	T	3.255e^-4	0.74	INTERGENIC
2R	11573681	2R_11573681_SNP [dm3] 2R_15686176_SNP [dm6]	A	T	3.256e^-4	0.74	UPSTREAM CG30082 INTRON Ranbp11	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	19450293	3R_19450293_SNP [dm3] 3R_23624571_SNP [dm6]	G	A	3.261e^-4	0.74	INTRON CG31145	TF binding site BDTNP1_TFBS_sna
2L	16651680	2L_16651680_SNP [dm3] 2L_16651680_SNP [dm6]	C	G	3.262e^-4	0.74	INTRON CG42389
2L	18288984	2L_18288984_SNP [dm3] 2L_18288984_SNP [dm6]	G	T	3.266e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	19753024	2L_19753024_SNP [dm3] 2L_19753024_SNP [dm6]	G	T	3.269e^-4	0.74	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26140050	3R_26140050_SNP [dm3] 3R_30314328_SNP [dm6]	T	C	3.289e^-4	0.74	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9506045	2L_9506045_SNP [dm3] 2L_9506045_SNP [dm6]	A	C	3.293e^-4	0.74	INTRON CG33298
X	2461610	X_2461610_SNP [dm3] X_2567577_SNP [dm6]	G	A	3.299e^-4	0.74	INTRON Pdfr
2L	3097318	2L_3097318_INS [dm3] 2L_3097318_INS [dm6]	G	GTG	3.303e^-4	0.74	INTRON toc
2R	16032977	2R_16032977_SNP [dm3] 2R_20145472_SNP [dm6]	T	C	3.310e^-4	0.74	UPSTREAM CG11041 INTERGENIC
2L	3856041	2L_3856041_SNP [dm3] 2L_3856041_SNP [dm6]	A	G	3.319e^-4	0.74	DOWNSTREAM CR45450 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	13832763	3R_13832763_SNP [dm3] 3R_18007041_SNP [dm6]	T	A	3.323e^-4	0.74	INTRON cpo
3R	22235045	3R_22235045_SNP [dm3] 3R_26409323_SNP [dm6]	C	G	3.328e^-4	0.74	INTERGENIC
3L	15046254	3L_15046254_SNP [dm3] 3L_15053154_SNP [dm6]	C	A	3.337e^-4	0.74	NON_SYNONYMOUS_CODING CG43680 UPSTREAM CG13461 DOWNSTREAM CG18649 INTRON Sytbeta
X	8389462	X_8389462_SNP [dm3] X_8495429_SNP [dm6]	T	C	3.340e^-4	0.74	INTRON CG33181
3R	24558428	3R_24558428_SNP [dm3] 3R_28732706_SNP [dm6]	C	G	3.346e^-4	0.74	INTRON htt	TF binding site mE1_TFBS_chinmo
2L	15990276	2L_15990276_SNP [dm3] 2L_15990276_SNP [dm6]	T	C	3.360e^-4	0.74	DOWNSTREAM CR43412 INTERGENIC
2L	7047622	2L_7047622_SNP [dm3] 2L_7047622_SNP [dm6]	A	G	3.365e^-4	0.74	INTRON milt	TF binding site BDTNP1_TFBS_hb
3R	25654485	3R_25654485_SNP [dm3] 3R_29828763_SNP [dm6]	T	A	3.366e^-4	0.74	INTRON Atg16
2R	17053221	2R_17053221_SNP [dm3] 2R_21165716_SNP [dm6]	G	A	3.369e^-4	0.74	SYNONYMOUS_CODING CG4266 INTRON CG4266	TF binding site mE1_TFBS_cad
2R	9689506	2R_9689506_SNP [dm3] 2R_13802001_SNP [dm6]	G	A	3.372e^-4	0.74	INTRON Cpr50Cb
2L	12296116	2L_12296116_SNP [dm3] 2L_12296116_SNP [dm6]	C	A	3.406e^-4	0.74	INTRON aret
3L	2780752	3L_2780752_INS [dm3] 3L_2780752_INS [dm6]	A	AA	3.419e^-4	0.74	UPSTREAM mRpS35 DOWNSTREAM Atg2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	12139340	2L_12139340_SNP [dm3] 2L_12139340_SNP [dm6]	A	G	3.423e^-4	0.74	INTRON Gr33a
2L	15882447	2L_15882447_SNP [dm3] 2L_15882447_SNP [dm6]	C	T	3.428e^-4	0.74	DOWNSTREAM CG44475 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	14258999	2L_14258999_SNP [dm3] 2L_14258999_SNP [dm6]	T	G	3.428e^-4	0.74	INTERGENIC
3R	8082131	3R_8082131_SNP [dm3] 3R_12256409_SNP [dm6]	C	G	3.431e^-4	0.74	SYNONYMOUS_CODING CG3942	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	12865149	2L_12865149_SNP [dm3] 2L_12865149_SNP [dm6]	T	G	3.432e^-4	0.74	INTERGENIC
2R	18945295	2R_18945295_SNP [dm3] 2R_23057772_SNP [dm6]	G	A	3.434e^-4	0.74	UPSTREAM CG44252 & 1 other INTRON CG44252
3R	18040466	3R_18040466_SNP [dm3] 3R_22214744_SNP [dm6]	G	C	3.442e^-4	0.74	NON_SYNONYMOUS_CODING Gld2 INTRON SKIP	TF binding site mE1_TFBS_inv
3R	25852391	3R_25852391_SNP [dm3] 3R_30026669_SNP [dm6]	C	T	3.444e^-4	0.74	UPSTREAM Axn INTRON Axn
2R	16978896	2R_16978896_SNP [dm3] 2R_21091391_SNP [dm6]	A	G	3.448e^-4	0.74	UPSTREAM Rbpn-5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12865112	2L_12865112_SNP [dm3] 2L_12865112_SNP [dm6]	T	A	3.454e^-4	0.74	INTERGENIC
3R	11310338	3R_11310338_SNP [dm3] 3R_15484616_SNP [dm6]	A	C	3.457e^-4	0.74	UTR_3_PRIME Rh6 DOWNSTREAM Trissin
2L	17748785	2L_17748785_SNP [dm3] 2L_17748785_SNP [dm6]	C	G	3.457e^-4	0.74	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23260579	3R_23260579_SNP [dm3] 3R_27434857_SNP [dm6]	A	C	3.457e^-4	0.74	INTRON side	TF binding site BDTNP1_TFBS_twi
X	10091094	X_10091094_SNP [dm3] X_10197061_SNP [dm6]	T	A	3.464e^-4	0.74	INTRON CR44894
3R	23041281	3R_23041281_SNP [dm3] 3R_27215559_SNP [dm6]	A	T	3.467e^-4	0.74	DOWNSTREAM CR34006 INTERGENIC
3R	25283650	3R_25283650_DEL [dm3] 3R_29457928_DEL [dm6]	CG	C	3.469e^-4	0.74	DOWNSTREAM CR44022 INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	2938740	2L_2938740_SNP [dm3] 2L_2938740_SNP [dm6]	A	C	3.470e^-4	0.74	INTRON lilli	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	7036335	2L_7036335_SNP [dm3] 2L_7036335_SNP [dm6]	G	T	3.478e^-4	0.74	SYNONYMOUS_CODING CG11266 UTR_3_PRIME CG11266	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14921534	2L_14921534_INS [dm3] 2L_14921534_INS [dm6]	C	CC	3.482e^-4	0.74	INTRON CG42313
X	9011964	X_9011964_SNP [dm3] X_9117931_SNP [dm6]	A	G	3.493e^-4	0.74	DOWNSTREAM AP-1gamma INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5919503	2L_5919503_SNP [dm3] 2L_5919503_SNP [dm6]	T	C	3.500e^-4	0.74	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	18110129	2L_18110129_DEL [dm3] 2L_18110129_DEL [dm6]	CTTGAAAATTGTTTATATTC...	ACTCTAACTC	3.501e^-4	0.74	INTERGENIC
X	20857681	X_20857681_INS [dm3] X_20986654_INS [dm6]	G	GTTGCTGCTG	3.507e^-4	0.74	INTERGENIC
3L	8771216	3L_8771216_SNP [dm3] 3L_8778116_SNP [dm6]	C	A	3.508e^-4	0.74	INTRON Fhos
2R	19393749	2R_19393749_SNP [dm3] 2R_23506226_SNP [dm6]	C	T	3.508e^-4	0.74	DOWNSTREAM CR43794 INTERGENIC
3L	8748412	3L_8748412_SNP [dm3] 3L_8755312_SNP [dm6]	C	G	3.510e^-4	0.74	UPSTREAM CG6576 INTRON Fhos
2R	2739272	2R_2739272_SNP [dm3] 2R_6851767_SNP [dm6]	G	A	3.511e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22371321	3R_22371321_SNP [dm3] 3R_26545599_SNP [dm6]	T	A	3.516e^-4	0.74	INTRON scrib
2R	9652224	2R_9652224_SNP [dm3] 2R_13764719_SNP [dm6]	C	T	3.517e^-4	0.74	INTERGENIC
2R	9652225	2R_9652225_SNP [dm3] 2R_13764720_SNP [dm6]	A	G	3.517e^-4	0.74	INTERGENIC
2L	16196542	2L_16196542_SNP [dm3] 2L_16196542_SNP [dm6]	T	C	3.518e^-4	0.74	UPSTREAM CR44735 INTERGENIC
3L	8755166	3L_8755166_SNP [dm3] 3L_8762066_SNP [dm6]	G	A	3.525e^-4	0.74	NON_SYNONYMOUS_CODING Fhos	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	21673108	2L_21673108_SNP [dm3] 2L_21673108_SNP [dm6]	G	A	3.526e^-4	0.74	UTR_5_PRIME CG2225
2L	21673218	2L_21673218_SNP [dm3] 2L_21673218_SNP [dm6]	G	T	3.526e^-4	0.74	UTR_5_PRIME CG2225
2R	18277501	2R_18277501_SNP [dm3] 2R_22389996_SNP [dm6]	C	T	3.528e^-4	0.74	INTRON CG13506	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3485581	2L_3485581_SNP [dm3] 2L_3485581_SNP [dm6]	C	T	3.530e^-4	0.74	INTRON CG15414
3L	7261756	3L_7261756_INS [dm3] 3L_7268656_INS [dm6]	T	TT	3.547e^-4	0.74	UTR_3_PRIME unc-13-4A	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	1028638	2L_1028638_SNP [dm3] 2L_1028638_SNP [dm6]	A	T	3.548e^-4	0.74	INTRON IA-2
2R	17112502	2R_17112502_DEL [dm3] 2R_21224997_DEL [dm6]	AT	A	3.549e^-4	0.74	INTRON ASPP
2R	17112505	2R_17112505_SNP [dm3] 2R_21225000_SNP [dm6]	A	T	3.549e^-4	0.74	INTRON ASPP
2L	18655268	2L_18655268_SNP [dm3] 2L_18655268_SNP [dm6]	G	T	3.554e^-4	0.74	INTRON MESR3	TF binding site mE1_TFBS_cnc
X	19568134	X_19568134_SNP [dm3] X_19674101_SNP [dm6]	A	T	3.556e^-4	0.74	INTRON et
X	8389487	X_8389487_DEL [dm3] X_8495454_DEL [dm6]	CAAAA	C	3.571e^-4	0.74	INTRON CG33181
2L	16491223	2L_16491223_SNP [dm3] 2L_16491223_SNP [dm6]	T	C	3.578e^-4	0.74	UPSTREAM Tpr2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
3L	12532350	3L_12532350_SNP [dm3] 3L_12539250_SNP [dm6]	T	C	3.579e^-4	0.74	DOWNSTREAM sowah INTRON sowah
X	9714180	X_9714180_SNP [dm3] X_9820147_SNP [dm6]	A	T	3.579e^-4	0.74	INTRON CG32698
2L	15306037	2L_15306037_SNP [dm3] 2L_15306037_SNP [dm6]	T	A	3.582e^-4	0.74	INTERGENIC
2L	18564610	2L_18564610_SNP [dm3] 2L_18564610_SNP [dm6]	G	C	3.587e^-4	0.74	INTRON Pde11	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	13548504	2R_13548504_SNP [dm3] 2R_17660999_SNP [dm6]	G	T	3.591e^-4	0.74	INTRON CCHa1-R
3L	11738044	3L_11738044_SNP [dm3] 3L_11744944_SNP [dm6]	T	A	3.597e^-4	0.74	INTRON CG6024
X	5689480	X_5689480_SNP [dm3] X_5795447_SNP [dm6]	A	G	3.605e^-4	0.74	DOWNSTREAM CG12239 INTERGENIC
X	10025003	X_10025003_SNP [dm3] X_10130970_SNP [dm6]	T	A	3.610e^-4	0.74	INTRON CR44894 & 1 other
3L	20177051	3L_20177051_SNP [dm3] 3L_20183951_SNP [dm6]	G	A	3.615e^-4	0.74	INTRON CG42674	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19076158	3R_19076158_SNP [dm3] 3R_23250436_SNP [dm6]	C	T	3.641e^-4	0.74	SYNONYMOUS_CODING CG4449
X	5338042	X_5338042_SNP [dm3] X_5444009_SNP [dm6]	T	G	3.641e^-4	0.74	INTERGENIC
X	18711021	X_18711021_SNP [dm3] X_18816988_SNP [dm6]	T	A	3.642e^-4	0.74	INTRON CG42450
2L	13398819	2L_13398819_SNP [dm3] 2L_13398819_SNP [dm6]	T	A	3.645e^-4	0.74	UPSTREAM CG7110 & 1 other DOWNSTREAM CR44600 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
3L	521428	3L_521428_SNP [dm3] 3L_521428_SNP [dm6]	G	T	3.648e^-4	0.74	INTRON klar
2L	197423	2L_197423_SNP [dm3] 2L_197423_SNP [dm6]	A	C	3.649e^-4	0.74	NON_SYNONYMOUS_CODING spen
3R	10415959	3R_10415959_SNP [dm3] 3R_14590237_SNP [dm6]	A	G	3.654e^-4	0.74	INTRON stumps	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20592459	X_20592459_SNP [dm3] X_20721432_SNP [dm6]	G	A	3.655e^-4	0.74	INTERGENIC	silencer mE1_HDAC_PRE
2L	3995307	2L_3995307_SNP [dm3] 2L_3995307_SNP [dm6]	G	C	3.657e^-4	0.74	INTERGENIC
3R	12746017	3R_12746017_SNP [dm3] 3R_16920295_SNP [dm6]	A	T	3.665e^-4	0.74	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	20126592	2L_20126592_SNP [dm3] 2L_20126592_SNP [dm6]	C	A	3.666e^-4	0.74	INTERGENIC
2R	19984575	2R_19984575_SNP [dm3] 2R_24097052_SNP [dm6]	G	A	3.670e^-4	0.74	INTRON gek	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	4572652	X_4572652_SNP [dm3] X_4678619_SNP [dm6]	C	A	3.671e^-4	0.74	INTRON rap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14206973	3R_14206973_SNP [dm3] 3R_18381251_SNP [dm6]	G	T	3.677e^-4	0.74	UPSTREAM CG7675 DOWNSTREAM CG14309 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	9755982	2R_9755982_SNP [dm3] 2R_13868477_SNP [dm6]	C	T	3.687e^-4	0.74	INTRON shot
3L	4611927	3L_4611927_SNP [dm3] 3L_4611927_SNP [dm6]	A	T	3.692e^-4	0.74	INTRON Src64B
2L	6110403	2L_6110403_SNP [dm3] 2L_6110403_SNP [dm6]	G	C	3.694e^-4	0.74	INTRON stai	TF binding site BDTNP1_TFBS_dl
2R	16283033	2R_16283033_SNP [dm3] 2R_20395528_SNP [dm6]	C	A	3.710e^-4	0.74	INTERGENIC
3L	13210285	3L_13210285_SNP [dm3] 3L_13217185_SNP [dm6]	C	T	3.710e^-4	0.74	EXON CR43914	TF binding site BDTNP1_TFBS_prd
3L	8748549	3L_8748549_SNP [dm3] 3L_8755449_SNP [dm6]	C	A	3.710e^-4	0.74	UPSTREAM CG6576 INTRON Fhos
X	20329347	X_20329347_SNP [dm3] X_20458320_SNP [dm6]	G	T	3.719e^-4	0.74	INTRON CG32506	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17740038	2L_17740038_SNP [dm3] 2L_17740038_SNP [dm6]	C	T	3.722e^-4	0.74	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	4171304	3L_4171304_SNP [dm3] 3L_4171304_SNP [dm6]	C	T	3.722e^-4	0.74	SYNONYMOUS_CODING Ero1L
X	20330439	X_20330439_SNP [dm3] X_20459412_SNP [dm6]	A	C	3.724e^-4	0.74	INTRON CG32506
3L	1590248	3L_1590248_SNP [dm3] 3L_1590248_SNP [dm6]	A	C	3.728e^-4	0.74	INTRON CG13917
2R	16032955	2R_16032955_SNP [dm3] 2R_20145450_SNP [dm6]	G	A	3.733e^-4	0.74	UPSTREAM CG11041 INTERGENIC
3L	1656828	3L_1656828_SNP [dm3] 3L_1656828_SNP [dm6]	C	G	3.739e^-4	0.74	NON_SYNONYMOUS_CODING CG7971	TF binding site mE1_TFBS_chinmo
X	20587994	X_20587994_SNP [dm3] X_20716967_SNP [dm6]	C	T	3.743e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3L	5189509	3L_5189509_SNP [dm3] 3L_5196409_SNP [dm6]	G	T	3.746e^-4	0.74	INTRON shep
X	19076513	X_19076513_SNP [dm3] X_19182480_SNP [dm6]	G	C	3.751e^-4	0.74	UPSTREAM CG33253 DOWNSTREAM CG7453 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12865179	2L_12865179_INS [dm3] 2L_12865179_INS [dm6]	T	TGTAT	3.752e^-4	0.74	INTERGENIC
3R	21694577	3R_21694577_SNP [dm3] 3R_25868855_SNP [dm6]	A	C	3.754e^-4	0.74	INTRON CG5890
2R	9756127	2R_9756127_SNP [dm3] 2R_13868622_SNP [dm6]	G	T	3.763e^-4	0.74	INTRON shot
2L	14191609	2L_14191609_SNP [dm3] 2L_14191609_SNP [dm6]	G	T	3.766e^-4	0.74	INTRON Dyrk2
2L	246853	2L_246853_SNP [dm3] 2L_246853_SNP [dm6]	A	G	3.770e^-4	0.74	INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10319990	2R_10319990_SNP [dm3] 2R_14432485_SNP [dm6]	A	G	3.772e^-4	0.74	UPSTREAM phyl DOWNSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	11976353	2R_11976353_SNP [dm3] 2R_16088848_SNP [dm6]	T	G	3.777e^-4	0.74	INTRON Dg
3R	9587281	3R_9587281_SNP [dm3] 3R_13761559_SNP [dm6]	C	G	3.780e^-4	0.74	UTR_3_PRIME CG34383 DOWNSTREAM CG34383 INTRON CG34383
2R	15339934	2R_15339934_SNP [dm3] 2R_19452429_SNP [dm6]	C	T	3.784e^-4	0.74	UPSTREAM CG7744 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3R	26444272	3R_26444272_SNP [dm3] 3R_30618550_SNP [dm6]	G	T	3.784e^-4	0.74	DOWNSTREAM CG44954 INTERGENIC
3L	21712814	3L_21712814_SNP [dm3] 3L_21719714_SNP [dm6]	A	G	3.798e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	2651661	2L_2651661_SNP [dm3] 2L_2651661_SNP [dm6]	C	T	3.798e^-4	0.74	NON_SYNONYMOUS_CODING CG33125
2L	2651663	2L_2651663_SNP [dm3] 2L_2651663_SNP [dm6]	T	G	3.798e^-4	0.74	NON_SYNONYMOUS_CODING CG33125
2R	17262141	2R_17262141_DEL [dm3] 2R_21374636_DEL [dm6]	TAT	T	3.800e^-4	0.74	INTRON cv-2
3R	10833717	3R_10833717_SNP [dm3] 3R_15007995_SNP [dm6]	T	A	3.803e^-4	0.74	INTERGENIC
2L	14412390	2L_14412390_DEL [dm3] 2L_14412390_DEL [dm6]	TT	T	3.805e^-4	0.74	INTERGENIC
3L	1661191	3L_1661191_DEL [dm3] 3L_1661191_DEL [dm6]	CC	C	3.808e^-4	0.74	INTRON CG7971
3L	2653204	3L_2653204_SNP [dm3] 3L_2653204_SNP [dm6]	G	A	3.810e^-4	0.74	UTR_5_PRIME CG42304 UTR_3_PRIME Snup UPSTREAM CG42304
2L	6020821	2L_6020821_SNP [dm3] 2L_6020821_SNP [dm6]	C	G	3.810e^-4	0.74	UPSTREAM CG13996 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20240070	3R_20240070_INS [dm3] 3R_24414348_INS [dm6]	C	CCATCCCCC	3.811e^-4	0.74	INTRON nAChRalpha1
2R	10119626	2R_10119626_SNP [dm3] 2R_14232121_SNP [dm6]	G	A	3.815e^-4	0.74	UTR_3_PRIME Opa1 INTRON Opa1
X	4525248	X_4525248_SNP [dm3] X_4631215_SNP [dm6]	G	T	3.823e^-4	0.74	UTR_3_PRIME CG12179 UPSTREAM CG12184 DOWNSTREAM CG12179	transposable element FlyBase
X	11422587	X_11422587_SNP [dm3] X_11528554_SNP [dm6]	T	A	3.823e^-4	0.74	INTRON Drak	TF binding site BDTNP1_TFBS_dl
2L	1539474	2L_1539474_SNP [dm3] 2L_1539474_SNP [dm6]	G	A	3.825e^-4	0.74	INTERGENIC
2L	16528935	2L_16528935_SNP [dm3] 2L_16528935_SNP [dm6]	C	A	3.833e^-4	0.74	UPSTREAM mir-4943 & 1 other INTRON CG5953
X	9945802	X_9945802_SNP [dm3] X_10051769_SNP [dm6]	A	G	3.834e^-4	0.74	SYNONYMOUS_CODING Yp2 DOWNSTREAM Cht6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6401623	2L_6401623_SNP [dm3] 2L_6401623_SNP [dm6]	A	T	3.841e^-4	0.74	INTRON CG42368
2L	17656797	2L_17656797_SNP [dm3] 2L_17656797_SNP [dm6]	C	T	3.843e^-4	0.74	INTRON CadN
3L	14687303	3L_14687303_DEL [dm3] 3L_14694203_DEL [dm6]	GG	G	3.852e^-4	0.74	INTRON ome
2R	13653229	2R_13653229_SNP [dm3] 2R_17765724_SNP [dm6]	G	A	3.860e^-4	0.74	SYNONYMOUS_CODING OstDelta DOWNSTREAM mir-3643	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	5569114	3L_5569114_DEL [dm3] 3L_5576014_DEL [dm6]	AA	A	3.864e^-4	0.74	UPSTREAM Msr-110 INTRON Msr-110
3L	1549105	3L_1549105_SNP [dm3] 3L_1549105_SNP [dm6]	T	A	3.865e^-4	0.74	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12808013	2R_12808013_SNP [dm3] 2R_16920508_SNP [dm6]	T	C	3.879e^-4	0.74	INTERGENIC
2R	7897368	2R_7897368_SNP [dm3] 2R_12009863_SNP [dm6]	A	C	3.879e^-4	0.74	INTRON otk	regulatory region REDfly_CRMs
X	11822499	X_11822499_SNP [dm3] X_11928466_SNP [dm6]	G	T	3.885e^-4	0.74	SYNONYMOUS_CODING CG10362	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1457328	3L_1457328_SNP [dm3] 3L_1457328_SNP [dm6]	T	A	3.888e^-4	0.74	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	6771701	X_6771701_SNP [dm3] X_6877668_SNP [dm6]	G	T	3.890e^-4	0.74	SYNONYMOUS_CODING CG43736 INTRON CG43736	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4239652	3R_4239652_SNP [dm3] 3R_8413930_SNP [dm6]	G	T	3.894e^-4	0.74	INTRON CG45263
3L	9026325	3L_9026325_SNP [dm3] 3L_9033225_SNP [dm6]	G	T	3.912e^-4	0.74	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	2758437	2R_2758437_SNP [dm3] 2R_6870932_SNP [dm6]	C	A	3.913e^-4	0.74	INTRON coro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	21694717	3R_21694717_SNP [dm3] 3R_25868995_SNP [dm6]	T	C	3.923e^-4	0.74	INTRON CG5890	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	17445315	2R_17445315_SNP [dm3] 2R_21557810_SNP [dm6]	C	A	3.934e^-4	0.74	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13483490	2R_13483490_SNP [dm3] 2R_17595985_SNP [dm6]	C	T	3.943e^-4	0.74	SYNONYMOUS_CODING CG11423 INTRON lack
2L	2647079	2L_2647079_SNP [dm3] 2L_2647079_SNP [dm6]	G	A	3.946e^-4	0.74	SYNONYMOUS_CODING CG9962 UPSTREAM CG43851 DOWNSTREAM CR43852	TF binding site mE1_TFBS_chinmo
X	3060039	X_3060039_SNP [dm3] X_3166006_SNP [dm6]	A	G	3.947e^-4	0.74	SYNONYMOUS_CODING N	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	6400621	2R_6400621_SNP [dm3] 2R_10513116_SNP [dm6]	T	G	3.947e^-4	0.74	INTRON lola
3R	16240591	3R_16240591_DEL [dm3] 3R_20414869_DEL [dm6]	GG	G	3.948e^-4	0.74	INTRON Gfrl
X	20833508	X_20833508_SNP [dm3] X_20962481_SNP [dm6]	C	T	3.950e^-4	0.74	DOWNSTREAM Ser6 INTERGENIC
2L	19436443	2L_19436443_SNP [dm3] 2L_19436443_SNP [dm6]	A	C	3.952e^-4	0.74	SYNONYMOUS_CODING CG10237 DOWNSTREAM Rab9	TF binding site mE1_TFBS_chinmo
2L	15395120	2L_15395120_SNP [dm3] 2L_15395120_SNP [dm6]	T	A	3.954e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_cad
3L	3971677	3L_3971677_DEL [dm3] 3L_3971677_DEL [dm6]	GGTTTG	G	3.957e^-4	0.74	INTERGENIC
2L	21688628	2L_21688628_SNP [dm3] 2L_21688628_SNP [dm6]	A	G	3.957e^-4	0.74	INTRON CG31619
2L	8646296	2L_8646296_SNP [dm3] 2L_8646296_SNP [dm6]	T	C	3.959e^-4	0.74	INTRON Sema-1a
3R	10589685	3R_10589685_SNP [dm3] 3R_14763963_SNP [dm6]	T	C	3.964e^-4	0.74	INTRON jvl
2R	3578370	2R_3578370_SNP [dm3] 2R_7690865_SNP [dm6]	T	G	3.975e^-4	0.74	INTRON CG1399	TF binding site BDTNP1_TFBS_da
X	21498668	X_21498668_SNP [dm3] X_21627641_SNP [dm6]	G	C	3.995e^-4	0.74	INTRON DIP1	transposable element FlyBase
3L	8744599	3L_8744599_SNP [dm3] 3L_8751499_SNP [dm6]	C	T	4.006e^-4	0.74	EXON CR44527	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11716280	2R_11716280_SNP [dm3] 2R_15828775_SNP [dm6]	C	T	4.010e^-4	0.74	INTRON tun & 1 other
X	8387713	X_8387713_SNP [dm3] X_8493680_SNP [dm6]	G	A	4.019e^-4	0.74	INTRON CG33181
2L	16616709	2L_16616709_SNP [dm3] 2L_16616709_SNP [dm6]	C	T	4.020e^-4	0.74	INTRON CG42389	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3679231	2L_3679231_SNP [dm3] 2L_3679231_SNP [dm6]	A	T	4.033e^-4	0.74	INTRON CG34340
3L	21838007	3L_21838007_SNP [dm3] 3L_21844907_SNP [dm6]	C	G	4.037e^-4	0.74	UTR_5_PRIME mub	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	10114340	2R_10114340_SNP [dm3] 2R_14226835_SNP [dm6]	C	A	4.040e^-4	0.74	INTRON CG8468
2R	9645132	2R_9645132_SNP [dm3] 2R_13757627_SNP [dm6]	G	A	4.040e^-4	0.74	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_sens
2R	9646715	2R_9646715_SNP [dm3] 2R_13759210_SNP [dm6]	C	T	4.040e^-4	0.74	DOWNSTREAM CG6280 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	14373748	3R_14373748_SNP [dm3] 3R_18548026_SNP [dm6]	T	A	4.044e^-4	0.74	INTERGENIC
3R	21694571	3R_21694571_DEL [dm3] 3R_25868849_DEL [dm6]	AG	A	4.047e^-4	0.74	INTRON CG5890
2R	11716295	2R_11716295_SNP [dm3] 2R_15828790_SNP [dm6]	T	C	4.048e^-4	0.74	INTRON tun & 1 other
3R	14791848	3R_14791848_SNP [dm3] 3R_18966126_SNP [dm6]	T	G	4.048e^-4	0.74	INTRON CG42613 & 1 other
3R	11518832	3R_11518832_SNP [dm3] 3R_15693110_SNP [dm6]	T	C	4.051e^-4	0.74	UTR_5_PRIME CG31446
2L	16528937	2L_16528937_SNP [dm3] 2L_16528937_SNP [dm6]	T	G	4.052e^-4	0.74	UPSTREAM mir-4943 & 1 other INTRON CG5953
2R	11081481	2R_11081481_SNP [dm3] 2R_15193976_SNP [dm6]	C	G	4.054e^-4	0.74	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
2L	9850005	2L_9850005_DEL [dm3] 2L_9850005_DEL [dm6]	GAGTACGTGTGCA...	T	4.056e^-4	0.74	INTRON nAChRalpha6
3L	1661232	3L_1661232_SNP [dm3] 3L_1661232_SNP [dm6]	T	C	4.056e^-4	0.74	SYNONYMOUS_CODING CG7971
3R	21914525	3R_21914525_SNP [dm3] 3R_26088803_SNP [dm6]	G	A	4.062e^-4	0.74	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	18315646	2L_18315646_SNP [dm3] 2L_18315646_SNP [dm6]	G	A	4.073e^-4	0.74	INTERGENIC
2R	10326841	2R_10326841_SNP [dm3] 2R_14439336_SNP [dm6]	T	C	4.075e^-4	0.74	INTRON Oaz
3L	7900911	3L_7900911_SNP [dm3] 3L_7907811_SNP [dm6]	T	A	4.080e^-4	0.74	INTRON pbl
2L	12026109	2L_12026109_SNP [dm3] 2L_12026109_SNP [dm6]	G	A	4.082e^-4	0.74	UPSTREAM CR44587 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15124642	3R_15124642_SNP [dm3] 3R_19298920_SNP [dm6]	T	C	4.084e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2490727	3L_2490727_SNP [dm3] 3L_2490727_SNP [dm6]	C	G	4.085e^-4	0.74	START_GAINED CG1146 UTR_5_PRIME CG1146 INTRON CG45186 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	12595828	3R_12595828_SNP [dm3] 3R_16770106_SNP [dm6]	C	T	4.092e^-4	0.74	INTRON bxd	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	10833730	3R_10833730_SNP [dm3] 3R_15008008_SNP [dm6]	G	A	4.097e^-4	0.74	INTERGENIC
3L	21741300	3L_21741300_SNP [dm3] 3L_21748200_SNP [dm6]	A	T	4.101e^-4	0.74	SPLICE_SITE_REGION Syn1 SYNONYMOUS_CODING Syn1

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.001e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.01369

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	4.9188	0.0855

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2208 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	16741655	3L_16741655_SNP [dm3] 3L_16748555_SNP [dm6]	T	A	1.841e^-8	0.035	INTERGENIC	TF binding site mE1_TFBS_cad
3R	26321193	3R_26321193_SNP [dm3] 3R_30495471_SNP [dm6]	G	T	1.668e^-7	0.127	INTRON PH4alphaMP	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3R	26321184	3R_26321184_SNP [dm3] 3R_30495462_SNP [dm6]	T	C	2.037e^-7	0.127	INTRON PH4alphaMP	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
X	21495134	X_21495134_SNP [dm3] X_21624107_SNP [dm6]	T	C	6.200e^-7	0.291	UPSTREAM CG32500 DOWNSTREAM DIP1 INTERGENIC	transposable element FlyBase
X	10059682	X_10059682_INS [dm3] X_10165649_INS [dm6]	A	ACTTTCATATTCAA...	1.053e^-6	0.295	INTRON CR44894 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	10059689	X_10059689_SNP [dm3] X_10165656_SNP [dm6]	T	C	1.053e^-6	0.295	INTRON CR44894 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16741610	3L_16741610_SNP [dm3] 3L_16748510_SNP [dm6]	T	C	1.102e^-6	0.295	INTERGENIC	TF binding site mE1_TFBS_cad
X	10059701	X_10059701_SNP [dm3] X_10165668_SNP [dm6]	T	A	1.505e^-6	0.353	INTRON CR44894 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6021205	2L_6021205_SNP [dm3] 2L_6021205_SNP [dm6]	G	T	2.119e^-6	0.439	INTRON CG13996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21495148	X_21495148_SNP [dm3] X_21624121_SNP [dm6]	A	T	2.343e^-6	0.439	UPSTREAM CG32500 DOWNSTREAM DIP1 INTERGENIC	transposable element FlyBase
X	19975743	X_19975743_SNP [dm3] X_20081710_SNP [dm6]	A	T	3.290e^-6	0.475	INTERGENIC
2L	6021246	2L_6021246_SNP [dm3] 2L_6021246_SNP [dm6]	A	G	3.530e^-6	0.475	SYNONYMOUS_CODING CG13996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6021213	2L_6021213_SNP [dm3] 2L_6021213_SNP [dm6]	A	C	3.935e^-6	0.475	INTRON CG13996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3456886	2L_3456886_SNP [dm3] 2L_3456886_SNP [dm6]	G	A	3.944e^-6	0.475	SYNONYMOUS_CODING Cog3 UPSTREAM Sec5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	20286494	X_20286494_SNP [dm3] X_20415467_SNP [dm6]	C	T	4.257e^-6	0.475	UPSTREAM Obp19a INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15046252	3L_15046252_SNP [dm3] 3L_15053152_SNP [dm6]	C	T	4.260e^-6	0.475	SYNONYMOUS_CODING CG43680 UPSTREAM CG13461 DOWNSTREAM CG18649 INTRON Sytbeta
2L	13725717	2L_13725717_SNP [dm3] 2L_13725717_SNP [dm6]	C	T	4.302e^-6	0.475	INTERGENIC
X	10059699	X_10059699_SNP [dm3] X_10165666_SNP [dm6]	G	C	5.841e^-6	0.583	INTRON CR44894 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1722304	2L_1722304_SNP [dm3] 2L_1722304_SNP [dm6]	A	G	6.463e^-6	0.583	INTRON Rim2
2L	6021187	2L_6021187_SNP [dm3] 2L_6021187_SNP [dm6]	T	A	6.781e^-6	0.583	INTRON CG13996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15055828	3L_15055828_SNP [dm3] 3L_15062728_SNP [dm6]	A	G	7.257e^-6	0.583	UPSTREAM CR43684 INTRON Sytbeta
3L	10710888	3L_10710888_SNP [dm3] 3L_10717788_SNP [dm6]	T	A	7.425e^-6	0.583	INTERGENIC
X	21476782	X_21476782_SNP [dm3] X_21605755_SNP [dm6]	A	G	7.481e^-6	0.583	UPSTREAM CG14476 DOWNSTREAM CG17450 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	6021191	2L_6021191_SNP [dm3] 2L_6021191_SNP [dm6]	T	C	7.688e^-6	0.583	INTRON CG13996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21476703	X_21476703_SNP [dm3] X_21605676_SNP [dm6]	T	A	8.121e^-6	0.583	UPSTREAM CG14476 DOWNSTREAM CG17450 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx transposable element FlyBase
2L	17497784	2L_17497784_SNP [dm3] 2L_17497784_SNP [dm6]	T	A	9.103e^-6	0.583	UPSTREAM qua DOWNSTREAM CG15142 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15046254	3L_15046254_SNP [dm3] 3L_15053154_SNP [dm6]	C	A	9.548e^-6	0.583	NON_SYNONYMOUS_CODING CG43680 UPSTREAM CG13461 DOWNSTREAM CG18649 INTRON Sytbeta
2R	6648379	2R_6648379_SNP [dm3] 2R_10760874_SNP [dm6]	A	G	9.827e^-6	0.583	INTRON CG33144 EXON CR43605
X	2311437	X_2311437_SNP [dm3] X_2417404_SNP [dm6]	G	A	1.000e^-5	0.583	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	15404686	2L_15404686_SNP [dm3] 2L_15404686_SNP [dm6]	T	A	1.024e^-5	0.583	INTERGENIC
3L	16741425	3L_16741425_SNP [dm3] 3L_16748325_SNP [dm6]	G	T	1.032e^-5	0.583	INTERGENIC
2L	17497716	2L_17497716_SNP [dm3] 2L_17497716_SNP [dm6]	A	T	1.051e^-5	0.583	UPSTREAM qua DOWNSTREAM CG15142 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10059704	X_10059704_DEL [dm3] X_10165671_DEL [dm6]	TT	T	1.076e^-5	0.583	INTRON CR44894 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15046249	3L_15046249_SNP [dm3] 3L_15053149_SNP [dm6]	A	T	1.090e^-5	0.583	SYNONYMOUS_CODING CG43680 UPSTREAM CG13461 DOWNSTREAM CG18649 INTRON Sytbeta
3L	15046256	3L_15046256_SNP [dm3] 3L_15053156_SNP [dm6]	G	A	1.098e^-5	0.583	NON_SYNONYMOUS_CODING CG43680 UPSTREAM CG13461 DOWNSTREAM CG18649 INTRON Sytbeta
X	20284556	X_20284556_SNP [dm3] X_20413529_SNP [dm6]	T	A	1.163e^-5	0.583	UTR_5_PRIME CG15459 DOWNSTREAM CG15458	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3L	10203238	3L_10203238_SNP [dm3] 3L_10210138_SNP [dm6]	T	C	1.168e^-5	0.583	INTERGENIC
X	21476448	X_21476448_SNP [dm3] X_21605421_SNP [dm6]	A	T	1.206e^-5	0.583	UPSTREAM CG14476 DOWNSTREAM CG17450 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6021206	2L_6021206_SNP [dm3] 2L_6021206_SNP [dm6]	C	T	1.234e^-5	0.583	INTRON CG13996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20287867	X_20287867_SNP [dm3] X_20416840_SNP [dm6]	G	A	1.244e^-5	0.583	SYNONYMOUS_CODING Obp19b DOWNSTREAM Obp19a	TF binding site mE1_TFBS_chinmo
X	20286667	X_20286667_SNP [dm3] X_20415640_SNP [dm6]	A	G	1.298e^-5	0.591	UPSTREAM Obp19a INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17671915	2R_17671915_SNP [dm3] 2R_21784410_SNP [dm6]	C	T	1.346e^-5	0.591	INTERGENIC
2L	20130609	2L_20130609_SNP [dm3] 2L_20130609_SNP [dm6]	C	T	1.354e^-5	0.591	INTERGENIC
X	20284048	X_20284048_SNP [dm3] X_20413021_SNP [dm6]	T	A	1.416e^-5	0.603	NON_SYNONYMOUS_CODING CG15459 DOWNSTREAM HERC2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1657305	3L_1657305_SNP [dm3] 3L_1657305_SNP [dm6]	T	A	1.467e^-5	0.611	NON_SYNONYMOUS_CODING CG7971
2L	6020447	2L_6020447_SNP [dm3] 2L_6020447_SNP [dm6]	A	G	1.575e^-5	0.628	UPSTREAM CG13996 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10059328	X_10059328_SNP [dm3] X_10165295_SNP [dm6]	G	A	1.575e^-5	0.628	INTRON CR44894 & 1 other
3L	15730929	3L_15730929_SNP [dm3] 3L_15737829_SNP [dm6]	G	A	1.684e^-5	0.638	INTERGENIC
X	10059480	X_10059480_INS [dm3] X_10165447_INS [dm6]	C	AGTGGCTTGGAAAACTTG...	1.691e^-5	0.638	INTRON CR44894 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	22131775	X_22131775_SNP [dm3] X_22729939_SNP [dm6]	C	T	1.702e^-5	0.638	INTRON CR44997	transposable element FlyBase
X	22133012	X_22133012_SNP [dm3] X_22731176_SNP [dm6]	G	C	1.756e^-5	0.646	INTRON CR44997	transposable element FlyBase
2L	7036335	2L_7036335_SNP [dm3] 2L_7036335_SNP [dm6]	G	T	1.808e^-5	0.649	SYNONYMOUS_CODING CG11266 UTR_3_PRIME CG11266	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	505564	3L_505564_SNP [dm3] 3L_505564_SNP [dm6]	G	A	1.833e^-5	0.649	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	15046250	3L_15046250_SNP [dm3] 3L_15053150_SNP [dm6]	G	C	1.935e^-5	0.672	NON_SYNONYMOUS_CODING CG43680 UPSTREAM CG13461 DOWNSTREAM CG18649 INTRON Sytbeta
3L	10723148	3L_10723148_SNP [dm3] 3L_10730048_SNP [dm6]	A	C	2.004e^-5	0.676	INTERGENIC
2R	1588794	2R_1588794_SNP [dm3] 2R_5701289_SNP [dm6]	T	A	2.083e^-5	0.676	UPSTREAM vlc INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx transposable element FlyBase
3L	1658595	3L_1658595_SNP [dm3] 3L_1658595_SNP [dm6]	A	G	2.145e^-5	0.676	SPLICE_SITE_REGION CG7971 INTRON CG7971
X	10051933	X_10051933_SNP [dm3] X_10157900_SNP [dm6]	T	A	2.170e^-5	0.676	UPSTREAM CG43902 INTRON CR44894
2R	11081356	2R_11081356_SNP [dm3] 2R_15193851_SNP [dm6]	T	C	2.176e^-5	0.676	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
3L	5204419	3L_5204419_SNP [dm3] 3L_5211319_SNP [dm6]	A	G	2.188e^-5	0.676	INTRON shep
X	21498409	X_21498409_SNP [dm3] X_21627382_SNP [dm6]	G	A	2.201e^-5	0.676	INTRON DIP1	transposable element FlyBase
2R	20184835	2R_20184835_SNP [dm3] 2R_24297312_SNP [dm6]	C	G	2.250e^-5	0.68	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16203599	2L_16203599_SNP [dm3] 2L_16203599_SNP [dm6]	A	T	2.293e^-5	0.683	DOWNSTREAM CR44736 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16210434	2L_16210434_SNP [dm3] 2L_16210434_SNP [dm6]	G	A	2.408e^-5	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	9212403	X_9212403_SNP [dm3] X_9318370_SNP [dm6]	G	A	2.498e^-5	0.721	SYNONYMOUS_CODING c12.1 UPSTREAM c12.2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	21498527	X_21498527_SNP [dm3] X_21627500_SNP [dm6]	G	A	2.640e^-5	0.75	INTRON DIP1	transposable element FlyBase
3L	5887986	3L_5887986_SNP [dm3] 3L_5894886_SNP [dm6]	T	A	2.743e^-5	0.768	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10297842	X_10297842_SNP [dm3] X_10403809_SNP [dm6]	A	T	2.814e^-5	0.774	INTRON flw	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1657294	3L_1657294_SNP [dm3] 3L_1657294_SNP [dm6]	C	T	2.851e^-5	0.774	SYNONYMOUS_CODING CG7971
2L	15837813	2L_15837813_SNP [dm3] 2L_15837813_SNP [dm6]	T	C	2.922e^-5	0.774	UPSTREAM CR31822 INTERGENIC
3L	1657174	3L_1657174_SNP [dm3] 3L_1657174_SNP [dm6]	C	A	3.024e^-5	0.774	NON_SYNONYMOUS_CODING CG7971
2L	16210435	2L_16210435_SNP [dm3] 2L_16210435_SNP [dm6]	T	A	3.099e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3874247	2L_3874247_SNP [dm3] 2L_3874247_SNP [dm6]	C	T	3.171e^-5	0.774	SYNONYMOUS_CODING capu	TF binding site mE1_TFBS_chinmo
X	22138338	X_22138338_SNP [dm3] X_22736502_SNP [dm6]	A	G	3.225e^-5	0.774	INTRON CR44997
2R	73541	2R_73541_DEL [dm3] 2R_4186036_DEL [dm6]	GGCACGAAG	G	3.249e^-5	0.774	DOWNSTREAM CG40127 INTERGENIC
2L	16493673	2L_16493673_SNP [dm3] 2L_16493673_SNP [dm6]	C	T	3.258e^-5	0.774	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA
2L	6852702	2L_6852702_SNP [dm3] 2L_6852702_SNP [dm6]	T	A	3.387e^-5	0.774	NON_SYNONYMOUS_CODING Rca1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9643684	2R_9643684_SNP [dm3] 2R_13756179_SNP [dm6]	A	C	3.534e^-5	0.774	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_cad
2R	11081360	2R_11081360_SNP [dm3] 2R_15193855_SNP [dm6]	T	G	3.550e^-5	0.774	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
3L	16482548	3L_16482548_INS [dm3] 3L_16489448_INS [dm6]	A	AATGGACAA	3.557e^-5	0.774	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	15054608	3L_15054608_SNP [dm3] 3L_15061508_SNP [dm6]	C	A	3.588e^-5	0.774	NON_SYNONYMOUS_CODING CG13460 DOWNSTREAM CR43684 INTRON Sytbeta
3L	8750259	3L_8750259_SNP [dm3] 3L_8757159_SNP [dm6]	A	T	3.642e^-5	0.774	UTR_3_PRIME CG6576 INTRON Fhos
3L	9381434	3L_9381434_SNP [dm3] 3L_9388334_SNP [dm6]	T	C	3.644e^-5	0.774	SYNONYMOUS_CODING CG4080	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	21874732	2L_21874732_SNP [dm3] 2L_21874732_SNP [dm6]	G	T	3.647e^-5	0.774	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
3R	14009907	3R_14009907_SNP [dm3] 3R_18184185_SNP [dm6]	C	T	3.651e^-5	0.774	SYNONYMOUS_CODING CG7208 UPSTREAM cdm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	8018976	X_8018976_DEL [dm3] X_8124943_DEL [dm6]	AAACA	A	3.681e^-5	0.774	INTRON cyr	TF binding site BDTNP1_TFBS_dl
2L	17547880	2L_17547880_SNP [dm3] 2L_17547880_SNP [dm6]	A	C	3.693e^-5	0.774	DOWNSTREAM CR45697 INTERGENIC
3R	14888469	3R_14888469_SNP [dm3] 3R_19062747_SNP [dm6]	A	T	3.700e^-5	0.774	INTRON cdi
X	940919	X_940919_SNP [dm3] X_1046886_SNP [dm6]	T	C	3.767e^-5	0.774	UTR_3_PRIME CG42259 UPSTREAM CR44779 DOWNSTREAM su_w[a]_	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21498678	X_21498678_SNP [dm3] X_21627651_SNP [dm6]	C	A	3.802e^-5	0.774	INTRON DIP1	transposable element FlyBase
2L	16210431	2L_16210431_SNP [dm3] 2L_16210431_SNP [dm6]	G	T	3.817e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	15562397	2R_15562397_SNP [dm3] 2R_19674892_SNP [dm6]	C	T	3.871e^-5	0.774	INTERGENIC
X	10059665	X_10059665_SNP [dm3] X_10165632_SNP [dm6]	T	A	3.882e^-5	0.774	INTRON CR44894 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8753480	3L_8753480_SNP [dm3] 3L_8760380_SNP [dm6]	G	T	3.936e^-5	0.774	NON_SYNONYMOUS_CODING Fhos	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8142166	2L_8142166_SNP [dm3] 2L_8142166_SNP [dm6]	T	A	4.086e^-5	0.774	UPSTREAM mir-4984 INTRON CG8552
3L	8745503	3L_8745503_SNP [dm3] 3L_8752403_SNP [dm6]	G	C	4.144e^-5	0.774	UPSTREAM CR44527 INTERGENIC
X	20286640	X_20286640_SNP [dm3] X_20415613_SNP [dm6]	T	C	4.151e^-5	0.774	UPSTREAM Obp19a INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8774524	2L_8774524_SNP [dm3] 2L_8774524_SNP [dm6]	G	T	4.243e^-5	0.774	SYNONYMOUS_CODING CG9466	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17868992	2R_17868992_SNP [dm3] 2R_21981487_SNP [dm6]	C	T	4.250e^-5	0.774	DOWNSTREAM Gr58a INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26326899	3R_26326899_SNP [dm3] 3R_30501177_SNP [dm6]	G	C	4.257e^-5	0.774	UTR_3_PRIME CG31371 UPSTREAM PH4alphaNE1	TF binding site mE1_TFBS_cad
X	19427322	X_19427322_SNP [dm3] X_19533289_SNP [dm6]	A	G	4.298e^-5	0.774	INTRON CG32532	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17910211	3L_17910211_SNP [dm3] 3L_17917111_SNP [dm6]	T	G	4.325e^-5	0.774	INTERGENIC
3L	1933611	3L_1933611_SNP [dm3] 3L_1933611_SNP [dm6]	A	C	4.452e^-5	0.774	DOWNSTREAM CG5687 & 1 other INTERGENIC
2R	16780775	2R_16780775_SNP [dm3] 2R_20893270_SNP [dm6]	A	G	4.558e^-5	0.774	INTRON otp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16215193	2L_16215193_SNP [dm3] 2L_16215193_SNP [dm6]	G	T	4.558e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1334255	2L_1334255_SNP [dm3] 2L_1334255_SNP [dm6]	A	T	4.560e^-5	0.774	UTR_5_PRIME CG5440
3L	5954762	3L_5954762_SNP [dm3] 3L_5961662_SNP [dm6]	T	C	4.579e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	15731109	3L_15731109_DEL [dm3] 3L_15738009_DEL [dm6]	GTC	T	4.656e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	20283411	X_20283411_SNP [dm3] X_20412384_SNP [dm6]	G	A	4.738e^-5	0.774	UTR_3_PRIME CG15459 DOWNSTREAM HERC2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	1659018	3L_1659018_SNP [dm3] 3L_1659018_SNP [dm6]	T	A	4.744e^-5	0.774	INTRON CG7971
3L	2606496	3L_2606496_SNP [dm3] 3L_2606496_SNP [dm6]	C	A	4.936e^-5	0.774	INTRON Pxn
3R	2630032	3R_2630032_SNP [dm3] 3R_6804310_SNP [dm6]	C	T	4.945e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	2384781	X_2384781_SNP [dm3] X_2490748_SNP [dm6]	G	A	4.982e^-5	0.774	SYNONYMOUS_CODING trol	TF binding site BDTNP1_TFBS_twi
3R	26320634	3R_26320634_SNP [dm3] 3R_30494912_SNP [dm6]	C	A	4.998e^-5	0.774	INTRON PH4alphaMP	TF binding site mE1_TFBS_inv
2L	11691909	2L_11691909_SNP [dm3] 2L_11691909_SNP [dm6]	T	C	5.033e^-5	0.774	INTERGENIC
2R	16563139	2R_16563139_SNP [dm3] 2R_20675634_SNP [dm6]	C	A	5.043e^-5	0.774	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13725195	2L_13725195_SNP [dm3] 2L_13725195_SNP [dm6]	T	A	5.054e^-5	0.774	INTERGENIC
3R	14009883	3R_14009883_SNP [dm3] 3R_18184161_SNP [dm6]	C	G	5.122e^-5	0.774	SYNONYMOUS_CODING CG7208 UPSTREAM cdm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	17899	2R_17899_SNP [dm3] 2R_4130394_SNP [dm6]	G	A	5.209e^-5	0.774	UPSTREAM CG17683 INTERGENIC
3L	15056026	3L_15056026_SNP [dm3] 3L_15062926_SNP [dm6]	G	C	5.220e^-5	0.774	UPSTREAM CR43684 INTRON Sytbeta
2L	22650650	2L_22650650_SNP [dm3] 2L_22757918_SNP [dm6]	G	A	5.230e^-5	0.774	INTERGENIC
2R	6879536	2R_6879536_SNP [dm3] 2R_10992031_SNP [dm6]	T	A	5.276e^-5	0.774	INTRON luna	TF binding site mE1_TFBS_chinmo
3L	16756509	3L_16756509_SNP [dm3] 3L_16763409_SNP [dm6]	C	G	5.284e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	8743233	3L_8743233_SNP [dm3] 3L_8750133_SNP [dm6]	T	G	5.332e^-5	0.774	UPSTREAM CG13306 INTERGENIC
3L	8760664	3L_8760664_SNP [dm3] 3L_8767564_SNP [dm6]	G	A	5.370e^-5	0.774	INTRON Fhos
2R	9367448	2R_9367448_INS [dm3] 2R_13479943_INS [dm6]	T	TGAGCGCT	5.403e^-5	0.774	INTRON arr
X	20284783	X_20284783_SNP [dm3] X_20413756_SNP [dm6]	A	G	5.445e^-5	0.774	UTR_3_PRIME CG15458 UPSTREAM CG15459	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3L	8742795	3L_8742795_SNP [dm3] 3L_8749695_SNP [dm6]	C	A	5.481e^-5	0.774	UTR_5_PRIME CG13306	TF binding site mE1_TFBS_bab1
3L	8743022	3L_8743022_SNP [dm3] 3L_8749922_SNP [dm6]	G	A	5.481e^-5	0.774	UPSTREAM CG13306 INTERGENIC
3L	8757564	3L_8757564_SNP [dm3] 3L_8764464_SNP [dm6]	A	C	5.546e^-5	0.774	INTRON Fhos
2L	16210408	2L_16210408_SNP [dm3] 2L_16210408_SNP [dm6]	A	T	5.591e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8116013	3R_8116013_SNP [dm3] 3R_12290291_SNP [dm6]	A	G	5.630e^-5	0.774	SYNONYMOUS_CODING svp UTR_5_PRIME svp
2L	7031911	2L_7031911_SNP [dm3] 2L_7031911_SNP [dm6]	G	T	5.643e^-5	0.774	SYNONYMOUS_CODING Rab30 UPSTREAM CG11266	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	10529981	3L_10529981_DEL [dm3] 3L_10536881_DEL [dm6]	TGG	AA	5.649e^-5	0.774	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15324648	3L_15324648_SNP [dm3] 3L_15331548_SNP [dm6]	A	C	5.672e^-5	0.774	UPSTREAM CR43247 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17900	2R_17900_SNP [dm3] 2R_4130395_SNP [dm6]	C	T	5.687e^-5	0.774	UPSTREAM CG17683 INTERGENIC
2L	22650648	2L_22650648_SNP [dm3] 2L_22757916_SNP [dm6]	T	C	5.787e^-5	0.774	INTERGENIC
3L	8742928	3L_8742928_SNP [dm3] 3L_8749828_SNP [dm6]	C	A	5.832e^-5	0.774	UPSTREAM CG13306 INTERGENIC
X	20287032	X_20287032_SNP [dm3] X_20416005_SNP [dm6]	C	T	5.865e^-5	0.774	SYNONYMOUS_CODING Obp19a UPSTREAM Obp19b	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15226683	2R_15226683_SNP [dm3] 2R_19339178_SNP [dm6]	T	C	5.968e^-5	0.774	INTRON Rgk1
2L	9362482	2L_9362482_INS [dm3] 2L_9362482_INS [dm6]	A	ACAC	6.053e^-5	0.774	INTERGENIC
2L	9362484	2L_9362484_SNP [dm3] 2L_9362484_SNP [dm6]	G	T	6.053e^-5	0.774	INTERGENIC
X	9212224	X_9212224_SNP [dm3] X_9318191_SNP [dm6]	A	G	6.130e^-5	0.774	UTR_3_PRIME c12.1	TF binding site mE1_TFBS_cad
2R	14416310	2R_14416310_SNP [dm3] 2R_18528805_SNP [dm6]	G	C	6.159e^-5	0.774	INTRON CG10924	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2608357	3R_2608357_SNP [dm3] 3R_6782635_SNP [dm6]	C	A	6.200e^-5	0.774	INTERGENIC
2L	14028260	2L_14028260_SNP [dm3] 2L_14028260_SNP [dm6]	A	T	6.244e^-5	0.774	INTRON CG4500	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8996442	2R_8996442_SNP [dm3] 2R_13108937_SNP [dm6]	G	C	6.248e^-5	0.774	INTERGENIC
3L	8757553	3L_8757553_SNP [dm3] 3L_8764453_SNP [dm6]	G	T	6.270e^-5	0.774	INTRON Fhos
2R	3797909	2R_3797909_SNP [dm3] 2R_7910404_SNP [dm6]	C	A	6.287e^-5	0.774	INTRON CG30377
3R	11128805	3R_11128805_SNP [dm3] 3R_15303083_SNP [dm6]	G	C	6.303e^-5	0.774	INTRON Tm1
3R	26326898	3R_26326898_SNP [dm3] 3R_30501176_SNP [dm6]	G	A	6.343e^-5	0.774	UTR_3_PRIME CG31371 UPSTREAM PH4alphaNE1	TF binding site mE1_TFBS_cad
3L	1661232	3L_1661232_SNP [dm3] 3L_1661232_SNP [dm6]	T	C	6.421e^-5	0.774	SYNONYMOUS_CODING CG7971
X	8636574	X_8636574_SNP [dm3] X_8742541_SNP [dm6]	G	A	6.453e^-5	0.774	INTERGENIC
2R	9796385	2R_9796385_SNP [dm3] 2R_13908880_SNP [dm6]	G	T	6.668e^-5	0.774	INTRON shot
X	10051924	X_10051924_SNP [dm3] X_10157891_SNP [dm6]	A	G	6.681e^-5	0.774	UPSTREAM CG43902 INTRON CR44894
X	10059639	X_10059639_SNP [dm3] X_10165606_SNP [dm6]	T	C	6.818e^-5	0.774	INTRON CR44894 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	10051867	X_10051867_SNP [dm3] X_10157834_SNP [dm6]	G	A	6.830e^-5	0.774	UPSTREAM CG43902 INTRON CR44894
X	10051906	X_10051906_SNP [dm3] X_10157873_SNP [dm6]	T	A	6.830e^-5	0.774	UPSTREAM CG43902 INTRON CR44894
3L	8748412	3L_8748412_SNP [dm3] 3L_8755312_SNP [dm6]	C	G	6.867e^-5	0.774	UPSTREAM CG6576 INTRON Fhos
2L	16200092	2L_16200092_SNP [dm3] 2L_16200092_SNP [dm6]	C	A	6.901e^-5	0.774	INTERGENIC
3L	7825689	3L_7825689_SNP [dm3] 3L_7832589_SNP [dm6]	A	G	6.945e^-5	0.774	UTR_5_PRIME Pdp1 INTRON Pdp1
3R	10733441	3R_10733441_SNP [dm3] 3R_14907719_SNP [dm6]	A	G	6.959e^-5	0.774	INTERGENIC
3L	3399671	3L_3399671_SNP [dm3] 3L_3399671_SNP [dm6]	C	T	7.030e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20433505	2L_20433505_SNP [dm3] 2L_20433505_SNP [dm6]	G	C	7.030e^-5	0.774	INTRON CG31688
3L	1932274	3L_1932274_SNP [dm3] 3L_1932274_SNP [dm6]	T	A	7.066e^-5	0.774	INTRON Dbx	TF binding site mE1_TFBS_chinmo
2R	19690246	2R_19690246_SNP [dm3] 2R_23802723_SNP [dm6]	C	G	7.159e^-5	0.774	UTR_3_PRIME CG30177
3L	9994075	3L_9994075_SNP [dm3] 3L_10000975_SNP [dm6]	G	T	7.182e^-5	0.774	INTRON dpr6
2L	20236066	2L_20236066_SNP [dm3] 2L_20236066_SNP [dm6]	G	A	7.222e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8532842	3L_8532842_SNP [dm3] 3L_8539742_SNP [dm6]	G	T	7.258e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	21475137	X_21475137_SNP [dm3] X_21604110_SNP [dm6]	C	T	7.321e^-5	0.774	INTRON CG14476	transposable element FlyBase
3R	19076103	3R_19076103_DEL [dm3] 3R_23250381_DEL [dm6]	TAATAT	T	7.341e^-5	0.774	INTRON CG4449
2L	7162992	2L_7162992_SNP [dm3] 2L_7162992_SNP [dm6]	C	A	7.396e^-5	0.774	INTERGENIC
3L	10698970	3L_10698970_SNP [dm3] 3L_10705870_SNP [dm6]	C	T	7.432e^-5	0.774	INTERGENIC
2L	16495897	2L_16495897_SNP [dm3] 2L_16495897_SNP [dm6]	G	A	7.441e^-5	0.774	UPSTREAM Tpr2 INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	15727743	3L_15727743_SNP [dm3] 3L_15734643_SNP [dm6]	C	T	7.516e^-5	0.774	INTERGENIC
3L	20914390	3L_20914390_SNP [dm3] 3L_20921290_SNP [dm6]	T	G	7.594e^-5	0.774	DOWNSTREAM CR45734 EXON CR43929	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10203327	3L_10203327_INS [dm3] 3L_10210227_INS [dm6]	T	TT	7.656e^-5	0.774	INTERGENIC
3L	505497	3L_505497_SNP [dm3] 3L_505497_SNP [dm6]	T	C	7.689e^-5	0.774	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	13148642	3L_13148642_SNP [dm3] 3L_13155542_SNP [dm6]	C	T	7.723e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8521742	3L_8521742_SNP [dm3] 3L_8528642_SNP [dm6]	A	G	7.800e^-5	0.774	UPSTREAM foi INTRON foi
3L	10660095	3L_10660095_SNP [dm3] 3L_10666995_SNP [dm6]	G	A	7.812e^-5	0.774	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	15875418	2R_15875418_INS [dm3] 2R_19987913_INS [dm6]	G	GG	7.908e^-5	0.774	INTERGENIC
2L	2944268	2L_2944268_SNP [dm3] 2L_2944268_SNP [dm6]	G	T	7.989e^-5	0.774	INTRON lilli	TF binding site mE1_TFBS_cad
X	9212123	X_9212123_SNP [dm3] X_9318090_SNP [dm6]	C	T	7.993e^-5	0.774	UTR_3_PRIME c12.1
3L	8748550	3L_8748550_SNP [dm3] 3L_8755450_SNP [dm6]	C	G	8.009e^-5	0.774	UPSTREAM CG6576 INTRON Fhos
3R	12524413	3R_12524413_SNP [dm3] 3R_16698691_SNP [dm6]	T	A	8.112e^-5	0.774	INTRON Ubx	regulatory region REDfly_CRMs
3L	12527387	3L_12527387_SNP [dm3] 3L_12534287_SNP [dm6]	C	T	8.180e^-5	0.774	UTR_3_PRIME CG34242 UPSTREAM CG10688 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	10935975	3L_10935975_SNP [dm3] 3L_10942875_SNP [dm6]	A	G	8.211e^-5	0.774	INTERGENIC
3R	2608482	3R_2608482_SNP [dm3] 3R_6782760_SNP [dm6]	T	G	8.233e^-5	0.774	INTERGENIC
2L	22650655	2L_22650655_SNP [dm3] 2L_22757923_SNP [dm6]	A	G	8.258e^-5	0.774	INTERGENIC
2L	3871976	2L_3871976_SNP [dm3] 2L_3871976_SNP [dm6]	A	G	8.281e^-5	0.774	DOWNSTREAM Cep97 & 1 other INTRON CG31957	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	19570736	2R_19570736_SNP [dm3] 2R_23683213_SNP [dm6]	G	T	8.292e^-5	0.774	UPSTREAM St3 DOWNSTREAM St1 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	4170593	2R_4170593_SNP [dm3] 2R_8283088_SNP [dm6]	A	T	8.356e^-5	0.774	INTERGENIC
2R	10319366	2R_10319366_DEL [dm3] 2R_14431861_DEL [dm6]	TAACT	T	8.370e^-5	0.774	INTRON phyl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20151822	X_20151822_SNP [dm3] X_20280795_SNP [dm6]	G	T	8.408e^-5	0.774	INTERGENIC
3R	19076185	3R_19076185_SNP [dm3] 3R_23250463_SNP [dm6]	A	G	8.481e^-5	0.774	SYNONYMOUS_CODING CG4449
2L	6027782	2L_6027782_SNP [dm3] 2L_6027782_SNP [dm6]	A	G	8.536e^-5	0.774	INTRON CG9109
3R	2629495	3R_2629495_DEL [dm3] 3R_6803773_DEL [dm6]	AGAAACA	TTC	8.547e^-5	0.774	INTERGENIC
2L	9820547	2L_9820547_SNP [dm3] 2L_9820547_SNP [dm6]	G	T	8.578e^-5	0.774	INTRON nAChRalpha6
2R	18127089	2R_18127089_SNP [dm3] 2R_22239584_SNP [dm6]	T	C	8.650e^-5	0.774	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18127108	2R_18127108_SNP [dm3] 2R_22239603_SNP [dm6]	T	A	8.650e^-5	0.774	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18925487	3R_18925487_SNP [dm3] 3R_23099765_SNP [dm6]	G	C	8.658e^-5	0.774	SYNONYMOUS_CODING CG6738 DOWNSTREAM CG6733 INTRON CG13830
3L	15727704	3L_15727704_SNP [dm3] 3L_15734604_SNP [dm6]	G	T	8.689e^-5	0.774	INTERGENIC
3L	15727705	3L_15727705_SNP [dm3] 3L_15734605_SNP [dm6]	G	T	8.689e^-5	0.774	INTERGENIC
X	5617693	X_5617693_SNP [dm3] X_5723660_SNP [dm6]	G	C	8.701e^-5	0.774	UPSTREAM CG32758 INTRON CG32758
2R	12024947	2R_12024947_SNP [dm3] 2R_16137442_SNP [dm6]	G	T	8.743e^-5	0.774	UTR_3_PRIME spin UPSTREAM Got1
2R	12025065	2R_12025065_SNP [dm3] 2R_16137560_SNP [dm6]	A	T	8.743e^-5	0.774	UTR_3_PRIME spin UPSTREAM Got1
3L	8088705	3L_8088705_SNP [dm3] 3L_8095605_SNP [dm6]	G	A	8.801e^-5	0.774	UPSTREAM Ect4 INTRON Ect4
X	20286104	X_20286104_SNP [dm3] X_20415077_SNP [dm6]	A	T	8.814e^-5	0.774	UPSTREAM CG15458 & 1 other INTERGENIC	regulatory region REDfly_CRMs
X	22147886	X_22147886_SNP [dm3] X_22746050_SNP [dm6]	G	A	8.845e^-5	0.774	INTRON CR44997
X	10051883	X_10051883_SNP [dm3] X_10157850_SNP [dm6]	G	C	8.907e^-5	0.774	UPSTREAM CG43902 INTRON CR44894
X	20331516	X_20331516_SNP [dm3] X_20460489_SNP [dm6]	G	A	8.940e^-5	0.774	INTRON CG32506
X	20331517	X_20331517_SNP [dm3] X_20460490_SNP [dm6]	G	A	8.940e^-5	0.774	INTRON CG32506
2R	10319990	2R_10319990_SNP [dm3] 2R_14432485_SNP [dm6]	A	G	8.952e^-5	0.774	UPSTREAM phyl DOWNSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	1752458	3L_1752458_SNP [dm3] 3L_1752458_SNP [dm6]	C	T	8.965e^-5	0.774	UTR_3_PRIME Cht2 DOWNSTREAM Cht2 & 1 other
2L	1559152	2L_1559152_SNP [dm3] 2L_1559152_SNP [dm6]	A	G	9.027e^-5	0.774	INTRON haf	TF binding site mE1_TFBS_HSA
X	12666628	X_12666628_SNP [dm3] X_12772595_SNP [dm6]	C	T	9.112e^-5	0.774	UTR_3_PRIME CG3812 & 1 other DOWNSTREAM CG32647
X	20603073	X_20603073_SNP [dm3] X_20732046_SNP [dm6]	C	A	9.141e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
X	21498688	X_21498688_SNP [dm3] X_21627661_SNP [dm6]	A	T	9.268e^-5	0.774	INTRON DIP1	transposable element FlyBase
X	21498689	X_21498689_SNP [dm3] X_21627662_SNP [dm6]	G	C	9.268e^-5	0.774	INTRON DIP1	transposable element FlyBase
3L	8748549	3L_8748549_SNP [dm3] 3L_8755449_SNP [dm6]	C	A	9.318e^-5	0.774	UPSTREAM CG6576 INTRON Fhos
2L	4962675	2L_4962675_SNP [dm3] 2L_4962675_SNP [dm6]	C	T	9.338e^-5	0.774	SYNONYMOUS_CODING CG34124	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10203165	3L_10203165_SNP [dm3] 3L_10210065_SNP [dm6]	A	G	9.348e^-5	0.774	INTERGENIC
2R	18127096	2R_18127096_SNP [dm3] 2R_22239591_SNP [dm6]	C	A	9.357e^-5	0.774	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18287247	2R_18287247_SNP [dm3] 2R_22399742_SNP [dm6]	A	G	9.375e^-5	0.774	INTRON babos	TF binding site BDTNP1_TFBS_dl
3L	5888029	3L_5888029_SNP [dm3] 3L_5894929_SNP [dm6]	G	A	9.396e^-5	0.774	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5486399	2L_5486399_SNP [dm3] 2L_5486399_SNP [dm6]	T	C	9.399e^-5	0.774	UPSTREAM CR45287 INTERGENIC
2L	19824457	2L_19824457_DEL [dm3] 2L_19824457_DEL [dm6]	TGGCCAAGAATTTACTGAAT...	T	9.424e^-5	0.774	INTRON sick
3R	13204206	3R_13204206_SNP [dm3] 3R_17378484_SNP [dm6]	G	A	9.448e^-5	0.774	INTRON Brf
2L	16528937	2L_16528937_SNP [dm3] 2L_16528937_SNP [dm6]	T	G	9.572e^-5	0.78	UPSTREAM mir-4943 & 1 other INTRON CG5953
2R	4083177	2R_4083177_SNP [dm3] 2R_8195672_SNP [dm6]	C	T	9.619e^-5	0.781	INTRON LRP1
X	9258200	X_9258200_SNP [dm3] X_9364167_SNP [dm6]	C	G	9.754e^-5	0.785	SYNONYMOUS_CODING mgl	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18926742	3R_18926742_SNP [dm3] 3R_23101020_SNP [dm6]	G	A	9.758e^-5	0.785	DOWNSTREAM CG6738 INTRON CG13830
2L	6309642	2L_6309642_SNP [dm3] 2L_6309642_SNP [dm6]	C	T	9.791e^-5	0.785	UPSTREAM CG43922 DOWNSTREAM CG13984 INTRON Ddr
2R	16562536	2R_16562536_SNP [dm3] 2R_20675031_SNP [dm6]	C	T	9.882e^-5	0.785	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	16528935	2L_16528935_SNP [dm3] 2L_16528935_SNP [dm6]	C	A	9.884e^-5	0.785	UPSTREAM mir-4943 & 1 other INTRON CG5953
3L	16734830	3L_16734830_SNP [dm3] 3L_16741730_SNP [dm6]	A	T	9.985e^-5	0.787	INTERGENIC
2L	17547868	2L_17547868_SNP [dm3] 2L_17547868_SNP [dm6]	A	C	9.998e^-5	0.787	DOWNSTREAM CR45697 INTERGENIC
3R	14524724	3R_14524724_SNP [dm3] 3R_18699002_SNP [dm6]	T	G	1.014e^-4	0.787	INTERGENIC
X	10759594	X_10759594_SNP [dm3] X_10865561_SNP [dm6]	C	A	1.022e^-4	0.787	UTR_3_PRIME CG2186	TF binding site BDTNP1_TFBS_dl
2L	4396900	2L_4396900_SNP [dm3] 2L_4396900_SNP [dm6]	C	A	1.027e^-4	0.787	SYNONYMOUS_CODING l_2_k05819
3R	27208620	3R_27208620_SNP [dm3] 3R_31382898_SNP [dm6]	G	T	1.027e^-4	0.787	INTRON CG1607
X	8555143	X_8555143_SNP [dm3] X_8661110_SNP [dm6]	T	C	1.032e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18040837	3L_18040837_INS [dm3] 3L_18047737_INS [dm6]	G	GT	1.037e^-4	0.787	INTRON Eip75B	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	22650652	2L_22650652_SNP [dm3] 2L_22757920_SNP [dm6]	G	A	1.042e^-4	0.787	INTERGENIC
2L	19753087	2L_19753087_SNP [dm3] 2L_19753087_SNP [dm6]	G	T	1.043e^-4	0.787	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19684983	2L_19684983_SNP [dm3] 2L_19684983_SNP [dm6]	A	G	1.047e^-4	0.787	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	8376854	2L_8376854_SNP [dm3] 2L_8376854_SNP [dm6]	T	C	1.049e^-4	0.787	UPSTREAM CG17294 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9993632	3L_9993632_SNP [dm3] 3L_10000532_SNP [dm6]	C	T	1.054e^-4	0.787	INTRON dpr6
2L	3485581	2L_3485581_SNP [dm3] 2L_3485581_SNP [dm6]	C	T	1.072e^-4	0.787	INTRON CG15414
2R	11471922	2R_11471922_SNP [dm3] 2R_15584417_SNP [dm6]	G	C	1.079e^-4	0.787	INTERGENIC
3R	27473150	3R_27473150_SNP [dm3] 3R_31647428_SNP [dm6]	A	G	1.083e^-4	0.787	INTRON kek6	TF binding site mE1_TFBS_chinmo
X	5349154	X_5349154_SNP [dm3] X_5455121_SNP [dm6]	G	T	1.083e^-4	0.787	INTRON SPR
X	22134145	X_22134145_SNP [dm3] X_22732309_SNP [dm6]	C	T	1.086e^-4	0.787	INTRON CR44997	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	506426	3L_506426_SNP [dm3] 3L_506426_SNP [dm6]	A	G	1.097e^-4	0.787	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	507671	3L_507671_SNP [dm3] 3L_507671_SNP [dm6]	C	T	1.097e^-4	0.787	INTRON klar
3L	507855	3L_507855_SNP [dm3] 3L_507855_SNP [dm6]	T	G	1.097e^-4	0.787	INTRON klar
2R	4292157	2R_4292157_SNP [dm3] 2R_8404652_SNP [dm6]	A	T	1.099e^-4	0.787	INTRON CG2121
X	19888757	X_19888757_SNP [dm3] X_19994724_SNP [dm6]	T	A	1.100e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	20286073	X_20286073_SNP [dm3] X_20415046_SNP [dm6]	T	C	1.107e^-4	0.787	UPSTREAM CG15458 & 1 other INTERGENIC	regulatory region REDfly_CRMs
2L	17497018	2L_17497018_SNP [dm3] 2L_17497018_SNP [dm6]	A	T	1.110e^-4	0.787	UTR_5_PRIME qua DOWNSTREAM CG15142 EXON CR45715	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4073151	2L_4073151_SNP [dm3] 2L_4073151_SNP [dm6]	T	G	1.116e^-4	0.787	INTRON ed
3L	19352866	3L_19352866_INS [dm3] 3L_19359766_INS [dm6]	T	TGGAACGTGTTATAGACGTG...	1.124e^-4	0.787	INTRON CG32206
3L	12846819	3L_12846819_SNP [dm3] 3L_12853719_SNP [dm6]	G	T	1.128e^-4	0.787	UTR_5_PRIME Ent3 DOWNSTREAM Wbp2
2L	1561059	2L_1561059_SNP [dm3] 2L_1561059_SNP [dm6]	C	G	1.139e^-4	0.787	INTRON haf	TF binding site mE1_TFBS_eve
2L	6022946	2L_6022946_SNP [dm3] 2L_6022946_SNP [dm6]	C	T	1.145e^-4	0.787	DOWNSTREAM CG9107 INTERGENIC	TF binding site mE1_TFBS_cad
X	20281971	X_20281971_SNP [dm3] X_20410944_SNP [dm6]	C	T	1.145e^-4	0.787	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9212436	X_9212436_SNP [dm3] X_9318403_SNP [dm6]	G	A	1.146e^-4	0.787	SYNONYMOUS_CODING c12.1 UPSTREAM c12.2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	2944201	2L_2944201_SNP [dm3] 2L_2944201_SNP [dm6]	T	C	1.154e^-4	0.787	INTRON lilli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
X	20283140	X_20283140_SNP [dm3] X_20412113_SNP [dm6]	C	T	1.155e^-4	0.787	UTR_3_PRIME HERC2 DOWNSTREAM CG15459	TF binding site BDTNP1_TFBS_dl
2L	20130586	2L_20130586_INS [dm3] 2L_20130586_INS [dm6]	G	GTCA	1.160e^-4	0.787	INTERGENIC
3R	20570681	3R_20570681_SNP [dm3] 3R_24744959_SNP [dm6]	T	C	1.162e^-4	0.787	SYNONYMOUS_CODING tok	TF binding site mE1_TFBS_chinmo
2R	7056322	2R_7056322_SNP [dm3] 2R_11168817_SNP [dm6]	A	G	1.164e^-4	0.787	INTRON shn & 1 other
3L	8743740	3L_8743740_SNP [dm3] 3L_8750640_SNP [dm6]	C	A	1.192e^-4	0.787	UPSTREAM CG13306 DOWNSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	8744121	3L_8744121_SNP [dm3] 3L_8751021_SNP [dm6]	T	C	1.192e^-4	0.787	DOWNSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8745852	3L_8745852_SNP [dm3] 3L_8752752_SNP [dm6]	G	T	1.192e^-4	0.787	UPSTREAM Fhos INTERGENIC
3L	8752484	3L_8752484_SNP [dm3] 3L_8759384_SNP [dm6]	C	A	1.192e^-4	0.787	SPLICE_SITE_REGION Fhos INTRON Fhos
3L	13153855	3L_13153855_SNP [dm3] 3L_13160755_SNP [dm6]	A	G	1.198e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	6308590	2R_6308590_SNP [dm3] 2R_10421085_SNP [dm6]	C	G	1.207e^-4	0.787	UPSTREAM CG33474 & 1 other INTRON CG11825	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	10840482	3R_10840482_SNP [dm3] 3R_15014760_SNP [dm6]	T	C	1.207e^-4	0.787	UPSTREAM CG14861 INTERGENIC
2L	3455452	2L_3455452_SNP [dm3] 2L_3455452_SNP [dm6]	C	T	1.209e^-4	0.787	SYNONYMOUS_CODING Cog3
2L	3455603	2L_3455603_SNP [dm3] 2L_3455603_SNP [dm6]	G	A	1.209e^-4	0.787	SYNONYMOUS_CODING Cog3	TF binding site mE1_TFBS_cad
2R	13236476	2R_13236476_SNP [dm3] 2R_17348971_SNP [dm6]	C	T	1.215e^-4	0.787	INTRON mbl
X	2396315	X_2396315_INS [dm3] X_2502282_INS [dm6]	T	AG	1.217e^-4	0.787	INTRON trol
3R	26317687	3R_26317687_DEL [dm3] 3R_30491965_DEL [dm6]	ATATAATAA	C	1.217e^-4	0.787	UTR_3_PRIME PH4alphaMP & 1 other	TF binding site mE1_TFBS_cad
X	10330164	X_10330164_SNP [dm3] X_10436131_SNP [dm6]	C	T	1.221e^-4	0.787	INTRON CG32683
X	6682461	X_6682461_SNP [dm3] X_6788428_SNP [dm6]	C	T	1.225e^-4	0.787	INTRON C3G	TF binding site mE1_TFBS_chinmo
2R	11081343	2R_11081343_SNP [dm3] 2R_15193838_SNP [dm6]	T	A	1.231e^-4	0.787	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
3L	3942494	3L_3942494_SNP [dm3] 3L_3942494_SNP [dm6]	C	G	1.241e^-4	0.787	UPSTREAM CG14982 & 1 other INTERGENIC
3R	18925766	3R_18925766_SNP [dm3] 3R_23100044_SNP [dm6]	C	A	1.244e^-4	0.787	SYNONYMOUS_CODING CG6738 DOWNSTREAM CG6733 INTRON CG13830
2R	11450722	2R_11450722_SNP [dm3] 2R_15563217_SNP [dm6]	G	A	1.247e^-4	0.787	DOWNSTREAM CG12963 INTRON CG8195
3L	1662168	3L_1662168_SNP [dm3] 3L_1662168_SNP [dm6]	G	C	1.250e^-4	0.787	SYNONYMOUS_CODING CG7971 INTRON CG7971	TF binding site mE1_TFBS_chinmo
2L	16203589	2L_16203589_SNP [dm3] 2L_16203589_SNP [dm6]	C	T	1.250e^-4	0.787	DOWNSTREAM CR44736 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	6682480	X_6682480_SNP [dm3] X_6788447_SNP [dm6]	T	G	1.251e^-4	0.787	INTRON C3G	TF binding site mE1_TFBS_chinmo
X	6682570	X_6682570_SNP [dm3] X_6788537_SNP [dm6]	A	G	1.251e^-4	0.787	SYNONYMOUS_CODING C3G	TF binding site mE1_TFBS_chinmo
X	19346539	X_19346539_SNP [dm3] X_19452506_SNP [dm6]	A	C	1.268e^-4	0.787	INTRON kek5	TF binding site mE1_TFBS_chinmo
2L	16319429	2L_16319429_SNP [dm3] 2L_16319429_SNP [dm6]	G	C	1.288e^-4	0.787	INTRON cact	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	13034001	2L_13034001_SNP [dm3] 2L_13034001_SNP [dm6]	G	A	1.288e^-4	0.787	INTRON CG9932
2R	1582076	2R_1582076_SNP [dm3] 2R_5694571_SNP [dm6]	T	C	1.289e^-4	0.787	INTERGENIC	TF binding site mE1_TFBS_kn
2R	4952827	2R_4952827_SNP [dm3] 2R_9065322_SNP [dm6]	T	A	1.289e^-4	0.787	INTRON ana	regulatory region REDfly_CRMs
2L	7165365	2L_7165365_SNP [dm3] 2L_7165365_SNP [dm6]	A	G	1.295e^-4	0.787	INTERGENIC
2L	1552664	2L_1552664_DEL [dm3] 2L_1552664_DEL [dm6]	AGA	A	1.310e^-4	0.787	INTERGENIC
2L	20113810	2L_20113810_SNP [dm3] 2L_20113810_SNP [dm6]	G	A	1.312e^-4	0.787	INTERGENIC
X	8636583	X_8636583_SNP [dm3] X_8742550_SNP [dm6]	G	A	1.324e^-4	0.787	INTERGENIC
X	10759589	X_10759589_SNP [dm3] X_10865556_SNP [dm6]	T	C	1.328e^-4	0.787	UTR_3_PRIME CG2186	TF binding site BDTNP1_TFBS_dl
2L	22650620	2L_22650620_SNP [dm3] 2L_22757888_SNP [dm6]	T	G	1.328e^-4	0.787	INTERGENIC
X	19352089	X_19352089_SNP [dm3] X_19458056_SNP [dm6]	C	A	1.330e^-4	0.787	INTRON kek5	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8757332	3L_8757332_SNP [dm3] 3L_8764232_SNP [dm6]	C	G	1.336e^-4	0.787	INTRON Fhos
3L	8761055	3L_8761055_SNP [dm3] 3L_8767955_SNP [dm6]	G	T	1.336e^-4	0.787	INTRON Fhos
2L	2446876	2L_2446876_SNP [dm3] 2L_2446876_SNP [dm6]	A	C	1.336e^-4	0.787	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
2R	12038620	2R_12038620_SNP [dm3] 2R_16151115_SNP [dm6]	T	C	1.341e^-4	0.787	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	507714	3L_507714_SNP [dm3] 3L_507714_SNP [dm6]	A	G	1.350e^-4	0.787	INTRON klar
2L	3460064	2L_3460064_SNP [dm3] 2L_3460064_SNP [dm6]	T	C	1.360e^-4	0.787	SYNONYMOUS_CODING Sec5 DOWNSTREAM CG3246	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10510136	3R_10510136_SNP [dm3] 3R_14684414_SNP [dm6]	G	C	1.360e^-4	0.787	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
2R	1365028	2R_1365028_SNP [dm3] 2R_5477523_SNP [dm6]	C	T	1.363e^-4	0.787	INTRON CG30440
2R	4947243	2R_4947243_SNP [dm3] 2R_9059738_SNP [dm6]	T	G	1.380e^-4	0.787	DOWNSTREAM CG8197 INTRON CG13743	TF binding site mE1_TFBS_cad
2L	13966142	2L_13966142_SNP [dm3] 2L_13966142_SNP [dm6]	T	A	1.381e^-4	0.787	INTRON NimB2
2L	2311882	2L_2311882_SNP [dm3] 2L_2311882_SNP [dm6]	A	C	1.382e^-4	0.787	UTR_5_PRIME eys INTRON CG9967	TF binding site mE1_TFBS_Trl
2R	19689623	2R_19689623_SNP [dm3] 2R_23802100_SNP [dm6]	A	G	1.382e^-4	0.787	NON_SYNONYMOUS_CODING CG30177	TF binding site mE1_TFBS_sens
X	11181745	X_11181745_INS [dm3] X_11287712_INS [dm6]	T	TT	1.390e^-4	0.787	INTRON CG44422
2R	17716443	2R_17716443_SNP [dm3] 2R_21828938_SNP [dm6]	A	G	1.398e^-4	0.787	INTRON CG13492	TF binding site mE1_TFBS_cad
3L	899934	3L_899934_SNP [dm3] 3L_899934_SNP [dm6]	C	T	1.400e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	26319506	3R_26319506_SNP [dm3] 3R_30493784_SNP [dm6]	T	C	1.403e^-4	0.787	SPLICE_SITE_REGION PH4alphaMP INTRON PH4alphaMP
X	5332525	X_5332525_SNP [dm3] X_5438492_SNP [dm6]	G	C	1.410e^-4	0.787	INTERGENIC
2L	20430931	2L_20430931_DEL [dm3] 2L_20430931_DEL [dm6]	TATCCTT	T	1.411e^-4	0.787	INTRON CG31688
3L	1657630	3L_1657630_SNP [dm3] 3L_1657630_SNP [dm6]	C	G	1.417e^-4	0.787	NON_SYNONYMOUS_CODING CG7971
3R	8567168	3R_8567168_SNP [dm3] 3R_12741446_SNP [dm6]	A	G	1.423e^-4	0.787	DOWNSTREAM CG5999 & 1 other INTERGENIC
3R	2629163	3R_2629163_SNP [dm3] 3R_6803441_SNP [dm6]	G	A	1.428e^-4	0.787	INTERGENIC
3R	16768706	3R_16768706_SNP [dm3] 3R_20942984_SNP [dm6]	T	C	1.431e^-4	0.787	INTRON CG31191
2R	11731906	2R_11731906_SNP [dm3] 2R_15844401_SNP [dm6]	A	G	1.437e^-4	0.787	SYNONYMOUS_CODING CG8249 INTRON tun	TF binding site mE1_TFBS_sens
2R	11417441	2R_11417441_SNP [dm3] 2R_15529936_SNP [dm6]	C	A	1.439e^-4	0.787	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15730930	3L_15730930_SNP [dm3] 3L_15737830_SNP [dm6]	T	C	1.442e^-4	0.787	INTERGENIC
X	12019676	X_12019676_DEL [dm3] X_12125643_DEL [dm6]	AA	A	1.459e^-4	0.787	INTRON Ten-a
X	2369391	X_2369391_SNP [dm3] X_2475358_SNP [dm6]	A	G	1.464e^-4	0.787	SPLICE_SITE_REGION trol DOWNSTREAM trol INTRON trol	TF binding site mE1_TFBS_cad
2L	7165380	2L_7165380_SNP [dm3] 2L_7165380_SNP [dm6]	A	G	1.485e^-4	0.787	INTERGENIC
2L	7165416	2L_7165416_SNP [dm3] 2L_7165416_SNP [dm6]	A	G	1.485e^-4	0.787	INTERGENIC
2L	4388959	2L_4388959_SNP [dm3] 2L_4388959_SNP [dm6]	C	G	1.493e^-4	0.787	INTRON Tps1
2R	8996536	2R_8996536_SNP [dm3] 2R_13109031_SNP [dm6]	C	G	1.494e^-4	0.787	INTERGENIC
X	22127894	X_22127894_SNP [dm3] X_22726058_SNP [dm6]	G	A	1.497e^-4	0.787	INTRON CR44997
X	20285715	X_20285715_SNP [dm3] X_20414688_SNP [dm6]	G	A	1.502e^-4	0.787	UPSTREAM CG15458 INTERGENIC	regulatory region REDfly_CRMs
2R	11731864	2R_11731864_SNP [dm3] 2R_15844359_SNP [dm6]	G	A	1.503e^-4	0.787	SYNONYMOUS_CODING CG8249 INTRON tun	TF binding site mE1_TFBS_sens
3R	19076032	3R_19076032_SNP [dm3] 3R_23250310_SNP [dm6]	C	T	1.515e^-4	0.787	SYNONYMOUS_CODING CG4449
2R	11874557	2R_11874557_SNP [dm3] 2R_15987052_SNP [dm6]	T	G	1.527e^-4	0.787	UPSTREAM CR45021 INTRON Strn-Mlck
2L	6309665	2L_6309665_SNP [dm3] 2L_6309665_SNP [dm6]	C	A	1.530e^-4	0.787	UPSTREAM CG43922 DOWNSTREAM CG13984 INTRON Ddr
X	13576864	X_13576864_INS [dm3] X_13682831_INS [dm6]	A	TTCATCGTTAT...	1.531e^-4	0.787	UPSTREAM CG11158 INTERGENIC
2L	7100355	2L_7100355_SNP [dm3] 2L_7100355_SNP [dm6]	C	T	1.531e^-4	0.787	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	8386870	X_8386870_SNP [dm3] X_8492837_SNP [dm6]	G	T	1.531e^-4	0.787	INTRON CG33181
2R	10364096	2R_10364096_SNP [dm3] 2R_14476591_SNP [dm6]	A	C	1.534e^-4	0.787	EXON CR44462	TF binding site mE1_TFBS_sens
2R	11792520	2R_11792520_INS [dm3] 2R_15905015_INS [dm6]	A	ATTCCTTGTAGAGTGGCAT...	1.534e^-4	0.787	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	7063675	2R_7063675_SNP [dm3] 2R_11176170_SNP [dm6]	G	A	1.536e^-4	0.787	INTRON shn
2R	7897360	2R_7897360_SNP [dm3] 2R_12009855_SNP [dm6]	C	G	1.537e^-4	0.787	INTRON otk	regulatory region REDfly_CRMs
3L	1657960	3L_1657960_SNP [dm3] 3L_1657960_SNP [dm6]	A	T	1.539e^-4	0.787	SYNONYMOUS_CODING CG7971
2L	1117032	2L_1117032_SNP [dm3] 2L_1117032_SNP [dm6]	G	A	1.547e^-4	0.787	INTRON Pino	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12525860	3L_12525860_SNP [dm3] 3L_12532760_SNP [dm6]	A	G	1.553e^-4	0.787	SYNONYMOUS_CODING Tsf2	TF binding site mE1_TFBS_sens
3R	26174606	3R_26174606_SNP [dm3] 3R_30348884_SNP [dm6]	G	C	1.555e^-4	0.787	INTRON hdc
3L	10452018	3L_10452018_SNP [dm3] 3L_10458918_SNP [dm6]	G	A	1.557e^-4	0.787	DOWNSTREAM Gem3 INTERGENIC
2L	1552691	2L_1552691_SNP [dm3] 2L_1552691_SNP [dm6]	C	T	1.565e^-4	0.787	INTERGENIC
3L	13343437	3L_13343437_SNP [dm3] 3L_13350337_SNP [dm6]	G	T	1.572e^-4	0.787	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	890011	2L_890011_SNP [dm3] 2L_890011_SNP [dm6]	C	T	1.578e^-4	0.787	INTERGENIC
X	11422587	X_11422587_SNP [dm3] X_11528554_SNP [dm6]	T	A	1.581e^-4	0.787	INTRON Drak	TF binding site BDTNP1_TFBS_dl
2L	13911007	2L_13911007_SNP [dm3] 2L_13911007_SNP [dm6]	G	A	1.581e^-4	0.787	NON_SYNONYMOUS_CODING Ance-2	TF binding site mE1_TFBS_cad
3R	25941085	3R_25941085_SNP [dm3] 3R_30115363_SNP [dm6]	T	C	1.586e^-4	0.787	INTRON sima
3L	10101478	3L_10101478_SNP [dm3] 3L_10108378_SNP [dm6]	A	C	1.591e^-4	0.787	INTRON dpr6
2R	10520703	2R_10520703_SNP [dm3] 2R_14633198_SNP [dm6]	T	C	1.593e^-4	0.787	INTERGENIC
2L	16001991	2L_16001991_SNP [dm3] 2L_16001991_SNP [dm6]	G	C	1.593e^-4	0.787	DOWNSTREAM CG34167 INTRON beat-Ic EXON CR43825
X	22134742	X_22134742_INS [dm3] X_22732906_INS [dm6]	T	GCC	1.598e^-4	0.787	INTRON CR44997
2L	18794460	2L_18794460_SNP [dm3] 2L_18794460_SNP [dm6]	G	A	1.602e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12359594	2R_12359594_SNP [dm3] 2R_16472089_SNP [dm6]	A	G	1.606e^-4	0.787	INTERGENIC
3R	11840174	3R_11840174_SNP [dm3] 3R_16014452_SNP [dm6]	A	C	1.607e^-4	0.787	INTRON GATAe
X	16423983	X_16423983_SNP [dm3] X_16529950_SNP [dm6]	C	T	1.620e^-4	0.787	INTRON para
3L	3921380	3L_3921380_SNP [dm3] 3L_3921380_SNP [dm6]	T	C	1.624e^-4	0.787	INTRON Eip63F-1
X	15013485	X_15013485_SNP [dm3] X_15119452_SNP [dm6]	C	A	1.633e^-4	0.787	INTERGENIC
3L	11528848	3L_11528848_SNP [dm3] 3L_11535748_SNP [dm6]	A	T	1.634e^-4	0.787	INTRON Mob2	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb
3R	18925473	3R_18925473_SNP [dm3] 3R_23099751_SNP [dm6]	G	A	1.640e^-4	0.787	NON_SYNONYMOUS_CODING CG6738 DOWNSTREAM CG6733 INTRON CG13830
2L	20431240	2L_20431240_SNP [dm3] 2L_20431240_SNP [dm6]	C	A	1.651e^-4	0.787	INTRON CG31688
2R	17896	2R_17896_SNP [dm3] 2R_4130391_SNP [dm6]	T	C	1.651e^-4	0.787	UPSTREAM CG17683 INTERGENIC
3R	19076158	3R_19076158_SNP [dm3] 3R_23250436_SNP [dm6]	C	T	1.659e^-4	0.787	SYNONYMOUS_CODING CG4449
2R	2443610	2R_2443610_SNP [dm3] 2R_6556105_SNP [dm6]	C	T	1.667e^-4	0.787	INTRON jing	TF binding site mE1_TFBS_sens
2L	7717065	2L_7717065_SNP [dm3] 2L_7717065_SNP [dm6]	T	C	1.671e^-4	0.787	NON_SYNONYMOUS_CODING CG13793 UPSTREAM CG33296
2L	1553917	2L_1553917_SNP [dm3] 2L_1553917_SNP [dm6]	T	C	1.678e^-4	0.787	INTERGENIC
2L	9983305	2L_9983305_SNP [dm3] 2L_9983305_SNP [dm6]	T	C	1.693e^-4	0.787	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21474781	X_21474781_SNP [dm3] X_21603754_SNP [dm6]	C	A	1.697e^-4	0.787	INTRON CG14476	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	22140551	X_22140551_SNP [dm3] X_22738715_SNP [dm6]	C	G	1.698e^-4	0.787	INTRON CR44997	transposable element FlyBase
3R	17194683	3R_17194683_SNP [dm3] 3R_21368961_SNP [dm6]	A	G	1.708e^-4	0.787	UTR_5_PRIME pre-mod_mdg4_-U UTR_3_PRIME pre-mod_mdg4_-X & 1 other DOWNSTREAM pre-mod_mdg4_-Y & 3 others INTRON mod_mdg4_
3R	18926429	3R_18926429_SNP [dm3] 3R_23100707_SNP [dm6]	G	C	1.710e^-4	0.787	INTRON CG13830 & 1 other
2R	19366724	2R_19366724_SNP [dm3] 2R_23479201_SNP [dm6]	C	T	1.710e^-4	0.787	INTRON CG43795
2R	19366725	2R_19366725_SNP [dm3] 2R_23479202_SNP [dm6]	T	C	1.710e^-4	0.787	INTRON CG43795
2L	20429312	2L_20429312_INS [dm3] 2L_20429312_INS [dm6]	T	TATT	1.711e^-4	0.787	INTRON CG31688	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11081354	2R_11081354_SNP [dm3] 2R_15193849_SNP [dm6]	T	C	1.713e^-4	0.787	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
X	21474911	X_21474911_SNP [dm3] X_21603884_SNP [dm6]	A	G	1.721e^-4	0.787	INTRON CG14476
2R	16362256	2R_16362256_INS [dm3] 2R_20474751_INS [dm6]	A	AGATA	1.724e^-4	0.787	INTRON CG12484
3L	2817467	3L_2817467_SNP [dm3] 3L_2817467_SNP [dm6]	A	T	1.725e^-4	0.787	INTRON CG43444
X	6683557	X_6683557_SNP [dm3] X_6789524_SNP [dm6]	T	C	1.729e^-4	0.787	INTRON C3G
2R	6648665	2R_6648665_SNP [dm3] 2R_10761160_SNP [dm6]	A	T	1.732e^-4	0.787	INTRON CG33144 & 1 other
3R	26322019	3R_26322019_SNP [dm3] 3R_30496297_SNP [dm6]	T	C	1.733e^-4	0.787	UPSTREAM PH4alphaMP DOWNSTREAM PH4alphaNE1 INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	13233426	2R_13233426_INS [dm3] 2R_17345921_INS [dm6]	A	AA	1.733e^-4	0.787	INTRON mbl
2R	2074948	2R_2074948_SNP [dm3] 2R_6187443_SNP [dm6]	C	A	1.738e^-4	0.787	DOWNSTREAM Ptr INTRON Ptr
X	20835122	X_20835122_SNP [dm3] X_20964095_SNP [dm6]	C	G	1.740e^-4	0.787	UPSTREAM Ser6 DOWNSTREAM CG1304 INTERGENIC
3R	2650679	3R_2650679_SNP [dm3] 3R_6824957_SNP [dm6]	T	C	1.741e^-4	0.787	UTR_3_PRIME Scr	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2R	16607969	2R_16607969_SNP [dm3] 2R_20720464_SNP [dm6]	A	C	1.746e^-4	0.787	INTRON dpr
2L	22650689	2L_22650689_SNP [dm3] 2L_22757957_SNP [dm6]	T	G	1.751e^-4	0.787	INTERGENIC
X	22127518	X_22127518_SNP [dm3] X_22725682_SNP [dm6]	T	A	1.762e^-4	0.787	INTRON CR44997
X	926237	X_926237_SNP [dm3] X_1032204_SNP [dm6]	T	C	1.763e^-4	0.787	DOWNSTREAM CG33082 INTRON su_w[a]_ & 1 other	TF binding site mE1_TFBS_sens
3L	12589650	3L_12589650_SNP [dm3] 3L_12596550_SNP [dm6]	G	A	1.764e^-4	0.787	DOWNSTREAM ara INTERGENIC
2L	3899225	2L_3899225_INS [dm3] 2L_3899225_INS [dm6]	C	CCCTCGGC	1.772e^-4	0.787	INTRON capu
2R	4073484	2R_4073484_SNP [dm3] 2R_8185979_SNP [dm6]	T	G	1.776e^-4	0.787	INTRON LRP1
X	20285498	X_20285498_SNP [dm3] X_20414471_SNP [dm6]	T	G	1.776e^-4	0.787	UPSTREAM CG15459 & 1 other INTERGENIC	regulatory region REDfly_CRMs
X	20285500	X_20285500_SNP [dm3] X_20414473_SNP [dm6]	A	T	1.776e^-4	0.787	UPSTREAM CG15459 & 1 other INTERGENIC	regulatory region REDfly_CRMs
3L	15731040	3L_15731040_INS [dm3] 3L_15737940_INS [dm6]	C	CAATATAACTAAC...	1.777e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26295240	3R_26295240_DEL [dm3] 3R_30469518_DEL [dm6]	TACTTGGTAA	T	1.778e^-4	0.787	INTRON PH4alphaEFB
2R	17671906	2R_17671906_INS [dm3] 2R_21784401_INS [dm6]	C	CC	1.786e^-4	0.787	INTERGENIC
3R	11814844	3R_11814844_SNP [dm3] 3R_15989122_SNP [dm6]	T	G	1.793e^-4	0.787	INTRON srp & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5283898	2R_5283898_SNP [dm3] 2R_9396393_SNP [dm6]	C	A	1.803e^-4	0.787	UTR_3_PRIME CG8801 UPSTREAM CG8800	TF binding site mE1_TFBS_cad
2L	1558728	2L_1558728_SNP [dm3] 2L_1558728_SNP [dm6]	T	C	1.803e^-4	0.787	INTRON haf
3R	2653275	3R_2653275_SNP [dm3] 3R_6827553_SNP [dm6]	C	T	1.807e^-4	0.787	INTRON Scr	regulatory region REDfly_CRMs
X	20285494	X_20285494_SNP [dm3] X_20414467_SNP [dm6]	C	T	1.822e^-4	0.787	UPSTREAM CG15459 & 1 other INTERGENIC	regulatory region REDfly_CRMs
2L	1557158	2L_1557158_SNP [dm3] 2L_1557158_SNP [dm6]	A	C	1.831e^-4	0.787	INTRON haf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	22153169	2L_22153169_INS [dm3] 2L_22153169_INS [dm6]	G	GATATG	1.831e^-4	0.787	UPSTREAM CG42748 DOWNSTREAM CG34137 INTRON CG42748	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
X	20287596	X_20287596_SNP [dm3] X_20416569_SNP [dm6]	G	A	1.832e^-4	0.787	UPSTREAM Obp19b DOWNSTREAM Obp19a INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2L	3449502	2L_3449502_SNP [dm3] 2L_3449502_SNP [dm6]	G	A	1.840e^-4	0.787	UPSTREAM Snx1 INTERGENIC
2L	7165355	2L_7165355_SNP [dm3] 2L_7165355_SNP [dm6]	A	G	1.843e^-4	0.787	INTERGENIC
3R	19076618	3R_19076618_SNP [dm3] 3R_23250896_SNP [dm6]	T	C	1.852e^-4	0.787	NON_SYNONYMOUS_CODING CG4449 UPSTREAM EloA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	7825741	3L_7825741_SNP [dm3] 3L_7832641_SNP [dm6]	A	G	1.859e^-4	0.787	UTR_5_PRIME Pdp1 INTRON Pdp1
3R	9911250	3R_9911250_SNP [dm3] 3R_14085528_SNP [dm6]	G	A	1.860e^-4	0.787	INTRON foxo
X	21182722	X_21182722_DEL [dm3] X_21311695_DEL [dm6]	ATAGGTCCCACTGTATCATG...	GTACATGTACATATA...	1.865e^-4	0.787	INTRON CG1801
2L	2944182	2L_2944182_SNP [dm3] 2L_2944182_SNP [dm6]	A	C	1.870e^-4	0.787	INTRON lilli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	19120130	3R_19120130_SNP [dm3] 3R_23294408_SNP [dm6]	C	T	1.870e^-4	0.787	NON_SYNONYMOUS_CODING pnt INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	2263737	X_2263737_SNP [dm3] X_2369704_SNP [dm6]	A	G	1.871e^-4	0.787	INTRON PsGEF	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20330974	X_20330974_SNP [dm3] X_20459947_SNP [dm6]	G	C	1.874e^-4	0.787	INTRON CG32506	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18861574	2L_18861574_SNP [dm3] 2L_18861574_SNP [dm6]	G	T	1.874e^-4	0.787	INTRON tup	TF binding site BDTNP1_TFBS_da
2R	2443533	2R_2443533_SNP [dm3] 2R_6556028_SNP [dm6]	T	C	1.883e^-4	0.787	INTRON jing	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15055644	3L_15055644_SNP [dm3] 3L_15062544_SNP [dm6]	C	T	1.884e^-4	0.787	UPSTREAM CG13460 INTRON Sytbeta EXON CR43684
X	3443500	X_3443500_INS [dm3] X_3549467_INS [dm6]	A	AA	1.885e^-4	0.787	INTRON CG32791
3R	24812507	3R_24812507_SNP [dm3] 3R_28986785_SNP [dm6]	G	A	1.885e^-4	0.787	INTERGENIC
3L	1657126	3L_1657126_SNP [dm3] 3L_1657126_SNP [dm6]	G	T	1.885e^-4	0.787	SYNONYMOUS_CODING CG7971
3R	25519970	3R_25519970_SNP [dm3] 3R_29694248_SNP [dm6]	G	A	1.904e^-4	0.787	INTRON dmrt99B
X	3186425	X_3186425_SNP [dm3] X_3292392_SNP [dm6]	G	A	1.906e^-4	0.787	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	25546145	3R_25546145_SNP [dm3] 3R_29720423_SNP [dm6]	C	T	1.909e^-4	0.787	INTRON CG15506
2R	4633973	2R_4633973_SNP [dm3] 2R_8746468_SNP [dm6]	C	A	1.913e^-4	0.787	INTRON CG8740
2L	3770759	2L_3770759_SNP [dm3] 2L_3770759_SNP [dm6]	A	G	1.915e^-4	0.787	UPSTREAM CR43704 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	16567826	2R_16567826_SNP [dm3] 2R_20680321_SNP [dm6]	C	T	1.919e^-4	0.787	INTERGENIC
2R	4077579	2R_4077579_SNP [dm3] 2R_8190074_SNP [dm6]	C	T	1.925e^-4	0.787	INTRON LRP1
X	22117007	X_22117007_SNP [dm3] X_22715171_SNP [dm6]	C	T	1.926e^-4	0.787	INTRON CR44997
X	942877	X_942877_SNP [dm3] X_1048844_SNP [dm6]	C	T	1.938e^-4	0.787	INTRON CR44779
3R	27527355	3R_27527355_SNP [dm3] 3R_31701633_SNP [dm6]	T	A	1.940e^-4	0.787	INTERGENIC	TF binding site mE1_TFBS_sens
3L	8330130	3L_8330130_SNP [dm3] 3L_8337030_SNP [dm6]	C	G	1.946e^-4	0.787	INTRON Cpr66Cb
2L	18574796	2L_18574796_SNP [dm3] 2L_18574796_SNP [dm6]	A	G	1.949e^-4	0.787	INTRON Pde11
2R	8242334	2R_8242334_SNP [dm3] 2R_12354829_SNP [dm6]	C	G	1.954e^-4	0.787	SYNONYMOUS_CODING CG30047 UPSTREAM CG30049	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21498668	X_21498668_SNP [dm3] X_21627641_SNP [dm6]	G	C	1.959e^-4	0.787	INTRON DIP1	transposable element FlyBase
2R	6648673	2R_6648673_SNP [dm3] 2R_10761168_SNP [dm6]	C	T	1.964e^-4	0.787	INTRON CG33144 & 1 other
3R	20135485	3R_20135485_SNP [dm3] 3R_24309763_SNP [dm6]	A	C	1.966e^-4	0.787	INTRON crb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8348206	2R_8348206_SNP [dm3] 2R_12460701_SNP [dm6]	C	G	1.978e^-4	0.787	INTRON Lac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11725442	2R_11725442_SNP [dm3] 2R_15837937_SNP [dm6]	G	C	1.982e^-4	0.787	INTRON tun	regulatory region REDfly_CRMs
2R	16780781	2R_16780781_SNP [dm3] 2R_20893276_SNP [dm6]	G	C	1.986e^-4	0.787	INTRON otp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11081401	2R_11081401_SNP [dm3] 2R_15193896_SNP [dm6]	C	T	1.990e^-4	0.787	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
X	12538725	X_12538725_INS [dm3] X_12644692_INS [dm6]	G	GTTGGTG	2.001e^-4	0.787	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	8747198	3L_8747198_SNP [dm3] 3L_8754098_SNP [dm6]	A	G	2.005e^-4	0.787	UTR_5_PRIME Fhos UPSTREAM Fhos
2L	3573429	2L_3573429_SNP [dm3] 2L_3573429_SNP [dm6]	A	T	2.007e^-4	0.787	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3L	642888	3L_642888_SNP [dm3] 3L_642888_SNP [dm6]	T	G	2.009e^-4	0.787	DOWNSTREAM ban & 1 other EXON CR43334	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	11779332	2R_11779332_SNP [dm3] 2R_15891827_SNP [dm6]	T	G	2.014e^-4	0.787	UPSTREAM sli INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4683139	2L_4683139_SNP [dm3] 2L_4683139_SNP [dm6]	C	A	2.014e^-4	0.787	UTR_3_PRIME Bsg25A INTRON CG11929	TF binding site BDTNP1_TFBS_dl
X	5915283	X_5915283_SNP [dm3] X_6021250_SNP [dm6]	A	C	2.020e^-4	0.787	INTERGENIC
X	13576720	X_13576720_SNP [dm3] X_13682687_SNP [dm6]	G	A	2.021e^-4	0.787	UPSTREAM CG11158 INTERGENIC
2L	11701714	2L_11701714_SNP [dm3] 2L_11701714_SNP [dm6]	C	A	2.028e^-4	0.787	INTERGENIC
2R	7110979	2R_7110979_SNP [dm3] 2R_11223474_SNP [dm6]	G	T	2.042e^-4	0.787	UTR_5_PRIME CG7737 DOWNSTREAM Syx6 INTRON CG7737	TF binding site BDTNP1_TFBS_twi
3L	11751508	3L_11751508_SNP [dm3] 3L_11758408_SNP [dm6]	T	G	2.042e^-4	0.787	INTRON CG6024
2L	20433595	2L_20433595_SNP [dm3] 2L_20433595_SNP [dm6]	A	G	2.044e^-4	0.787	INTRON CG31688
X	21325242	X_21325242_SNP [dm3] X_21454215_SNP [dm6]	G	A	2.047e^-4	0.787	INTRON CG42343
X	4632648	X_4632648_SNP [dm3] X_4738615_SNP [dm6]	T	G	2.056e^-4	0.787	INTERGENIC
3R	23276322	3R_23276322_SNP [dm3] 3R_27450600_SNP [dm6]	A	G	2.059e^-4	0.787	INTERGENIC
X	3186539	X_3186539_SNP [dm3] X_3292506_SNP [dm6]	C	T	2.067e^-4	0.787	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	15014704	2R_15014704_SNP [dm3] 2R_19127199_SNP [dm6]	G	T	2.072e^-4	0.787	UTR_5_PRIME CG15117 UPSTREAM CG15117 INTRON CG15117
3R	18927350	3R_18927350_SNP [dm3] 3R_23101628_SNP [dm6]	G	A	2.081e^-4	0.787	DOWNSTREAM CG6738 INTRON CG13830
2L	6581253	2L_6581253_SNP [dm3] 2L_6581253_SNP [dm6]	T	G	2.084e^-4	0.787	INTRON CG11319
3L	900025	3L_900025_SNP [dm3] 3L_900025_SNP [dm6]	G	C	2.090e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	15731313	3L_15731313_SNP [dm3] 3L_15738213_SNP [dm6]	C	G	2.092e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11081504	2R_11081504_SNP [dm3] 2R_15193999_SNP [dm6]	C	A	2.098e^-4	0.787	UTR_3_PRIME CG43829 UPSTREAM Sfp51E
3R	12539744	3R_12539744_SNP [dm3] 3R_16714022_SNP [dm6]	G	T	2.099e^-4	0.787	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22709802	3R_22709802_SNP [dm3] 3R_26884080_SNP [dm6]	A	T	2.103e^-4	0.787	NON_SYNONYMOUS_CODING T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4970911	3L_4970911_SNP [dm3] 3L_4970911_SNP [dm6]	A	C	2.104e^-4	0.787	INTRON Con	TF binding site BDTNP1_TFBS_dl
2L	7660124	2L_7660124_SNP [dm3] 2L_7660124_SNP [dm6]	C	A	2.106e^-4	0.787	UPSTREAM Slob INTRON Slob
3L	15044094	3L_15044094_SNP [dm3] 3L_15050994_SNP [dm6]	C	T	2.109e^-4	0.787	UTR_3_PRIME CG43679 UPSTREAM CG18581 & 1 other DOWNSTREAM CG13461 INTRON Sytbeta
3L	15044096	3L_15044096_SNP [dm3] 3L_15050996_SNP [dm6]	C	A	2.109e^-4	0.787	UTR_3_PRIME CG43679 UPSTREAM CG18581 & 1 other DOWNSTREAM CG13461 INTRON Sytbeta
3L	15044100	3L_15044100_SNP [dm3] 3L_15051000_SNP [dm6]	T	G	2.109e^-4	0.787	UTR_3_PRIME CG43679 UPSTREAM CG18581 & 1 other DOWNSTREAM CG13461 INTRON Sytbeta
2R	43488	2R_43488_SNP [dm3] 2R_4155983_SNP [dm6]	C	T	2.110e^-4	0.787	INTERGENIC
2R	6887180	2R_6887180_SNP [dm3] 2R_10999675_SNP [dm6]	T	C	2.111e^-4	0.787	INTRON luna
3L	5678591	3L_5678591_INS [dm3] 3L_5685491_INS [dm6]	A	AATATCTATACGCACACA...	2.113e^-4	0.787	INTRON sif
2R	10319176	2R_10319176_SNP [dm3] 2R_14431671_SNP [dm6]	C	A	2.115e^-4	0.787	INTRON phyl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
2L	1552552	2L_1552552_SNP [dm3] 2L_1552552_SNP [dm6]	G	C	2.119e^-4	0.787	INTERGENIC
3L	11867784	3L_11867784_SNP [dm3] 3L_11874684_SNP [dm6]	C	G	2.120e^-4	0.787	INTRON CG44837
2L	3435478	2L_3435478_SNP [dm3] 2L_3435478_SNP [dm6]	A	G	2.122e^-4	0.787	INTERGENIC
X	10084038	X_10084038_SNP [dm3] X_10190005_SNP [dm6]	T	C	2.130e^-4	0.787	INTRON CR44894 & 1 other
3R	26326969	3R_26326969_SNP [dm3] 3R_30501247_SNP [dm6]	A	C	2.135e^-4	0.787	UPSTREAM PH4alphaNE1 INTRON CG31371	TF binding site mE1_TFBS_cad
3R	24825326	3R_24825326_SNP [dm3] 3R_28999604_SNP [dm6]	A	T	2.141e^-4	0.787	INTRON wat
2R	17806824	2R_17806824_SNP [dm3] 2R_21919319_SNP [dm6]	C	A	2.154e^-4	0.787	INTRON Fili
2R	13770940	2R_13770940_SNP [dm3] 2R_17883435_SNP [dm6]	G	A	2.161e^-4	0.787	INTRON Elk
2L	7165345	2L_7165345_SNP [dm3] 2L_7165345_SNP [dm6]	G	A	2.165e^-4	0.787	INTERGENIC
2L	3872964	2L_3872964_SNP [dm3] 2L_3872964_SNP [dm6]	A	C	2.178e^-4	0.787	UPSTREAM CG31957 INTRON capu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
X	21325244	X_21325244_SNP [dm3] X_21454217_SNP [dm6]	T	G	2.186e^-4	0.787	INTRON CG42343
3L	11523709	3L_11523709_SNP [dm3] 3L_11530609_SNP [dm6]	C	A	2.190e^-4	0.787	INTRON Mob2
2L	20107690	2L_20107690_SNP [dm3] 2L_20107690_SNP [dm6]	G	A	2.203e^-4	0.787	INTERGENIC	transposable element FlyBase
2L	20109999	2L_20109999_SNP [dm3] 2L_20109999_SNP [dm6]	C	A	2.203e^-4	0.787	INTERGENIC	transposable element FlyBase
2L	20112211	2L_20112211_SNP [dm3] 2L_20112211_SNP [dm6]	T	A	2.203e^-4	0.787	INTERGENIC	transposable element FlyBase
3R	25876703	3R_25876703_SNP [dm3] 3R_30050981_SNP [dm6]	A	T	2.203e^-4	0.787	INTRON CG15528 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8767099	3L_8767099_SNP [dm3] 3L_8773999_SNP [dm6]	A	G	2.207e^-4	0.787	INTRON Fhos	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	13884302	3R_13884302_SNP [dm3] 3R_18058580_SNP [dm6]	G	C	2.210e^-4	0.787	INTERGENIC
3L	5031162	3L_5031162_SNP [dm3] 3L_5031162_SNP [dm6]	C	G	2.218e^-4	0.787	INTRON Con
X	2369402	X_2369402_SNP [dm3] X_2475369_SNP [dm6]	A	T	2.222e^-4	0.787	DOWNSTREAM trol INTRON trol	TF binding site mE1_TFBS_cad
3R	25319666	3R_25319666_SNP [dm3] 3R_29493944_SNP [dm6]	T	C	2.223e^-4	0.787	SYNONYMOUS_CODING Diedel UPSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	19136507	2R_19136507_SNP [dm3] 2R_23248984_SNP [dm6]	T	A	2.224e^-4	0.787	INTERGENIC
X	22133997	X_22133997_SNP [dm3] X_22732161_SNP [dm6]	T	C	2.224e^-4	0.787	INTRON CR44997	TF binding site mE1_TFBS_HSA
2L	2262561	2L_2262561_SNP [dm3] 2L_2262561_SNP [dm6]	A	C	2.227e^-4	0.787	UPSTREAM CG4270 INTERGENIC
2L	20117268	2L_20117268_SNP [dm3] 2L_20117268_SNP [dm6]	T	A	2.233e^-4	0.787	INTERGENIC	transposable element FlyBase
3R	4426619	3R_4426619_SNP [dm3] 3R_8600897_SNP [dm6]	T	A	2.236e^-4	0.787	INTRON 5-HT2B
3L	5958808	3L_5958808_SNP [dm3] 3L_5965708_SNP [dm6]	G	C	2.239e^-4	0.787	INTERGENIC
3L	5031168	3L_5031168_SNP [dm3] 3L_5031168_SNP [dm6]	G	A	2.239e^-4	0.787	INTRON Con
3L	5872404	3L_5872404_SNP [dm3] 3L_5879304_SNP [dm6]	T	C	2.246e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13576718	X_13576718_SNP [dm3] X_13682685_SNP [dm6]	C	A	2.250e^-4	0.787	UPSTREAM CG11158 INTERGENIC
3L	11711908	3L_11711908_SNP [dm3] 3L_11718808_SNP [dm6]	A	G	2.250e^-4	0.787	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2262484	2L_2262484_SNP [dm3] 2L_2262484_SNP [dm6]	A	T	2.251e^-4	0.787	UPSTREAM CG4270 INTERGENIC	TF binding site mE1_TFBS_sbb
2L	16429641	2L_16429641_SNP [dm3] 2L_16429641_SNP [dm6]	T	C	2.252e^-4	0.787	INTRON CG5888
2L	12197023	2L_12197023_SNP [dm3] 2L_12197023_SNP [dm6]	G	C	2.256e^-4	0.787	INTRON aret	TF binding site mE1_TFBS_inv
3L	6573214	3L_6573214_SNP [dm3] 3L_6580114_SNP [dm6]	C	G	2.257e^-4	0.787	INTRON CG18769 & 1 other
2L	15306014	2L_15306014_SNP [dm3] 2L_15306014_SNP [dm6]	C	G	2.260e^-4	0.787	INTERGENIC
2R	8455150	2R_8455150_SNP [dm3] 2R_12567645_SNP [dm6]	A	T	2.263e^-4	0.787	SPLICE_SITE_REGION Cyp301a1 INTRON Cyp301a1
3R	22244495	3R_22244495_SNP [dm3] 3R_26418773_SNP [dm6]	G	T	2.266e^-4	0.787	INTERGENIC
2L	13966157	2L_13966157_SNP [dm3] 2L_13966157_SNP [dm6]	A	G	2.268e^-4	0.787	INTRON NimB2
3L	1632461	3L_1632461_SNP [dm3] 3L_1632461_SNP [dm6]	T	C	2.269e^-4	0.787	INTRON nSyb
3L	5031134	3L_5031134_INS [dm3] 3L_5031134_INS [dm6]	T	TT	2.277e^-4	0.787	INTRON Con
2R	5339901	2R_5339901_SNP [dm3] 2R_9452396_SNP [dm6]	T	G	2.279e^-4	0.787	INTRON Camta
3R	20469985	3R_20469985_SNP [dm3] 3R_24644263_SNP [dm6]	A	G	2.280e^-4	0.787	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14273925	2R_14273925_SNP [dm3] 2R_18386420_SNP [dm6]	G	C	2.285e^-4	0.787	UPSTREAM CG15067 & 1 other INTERGENIC
2R	16942449	2R_16942449_SNP [dm3] 2R_21054944_SNP [dm6]	G	C	2.286e^-4	0.787	INTRON shg	TF binding site BDTNP1_TFBS_dl
2R	1582102	2R_1582102_SNP [dm3] 2R_5694597_SNP [dm6]	T	A	2.288e^-4	0.787	INTERGENIC	TF binding site mE1_TFBS_kn
3R	10756948	3R_10756948_SNP [dm3] 3R_14931226_SNP [dm6]	A	C	2.294e^-4	0.787	INTERGENIC
2L	3477568	2L_3477568_SNP [dm3] 2L_3477568_SNP [dm6]	G	T	2.303e^-4	0.787	UPSTREAM Thor EXON CR43928	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3512003	2L_3512003_SNP [dm3] 2L_3512003_SNP [dm6]	C	A	2.304e^-4	0.787	SYNONYMOUS_CODING CG33123	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19366658	2R_19366658_SNP [dm3] 2R_23479135_SNP [dm6]	T	C	2.311e^-4	0.787	INTRON CG43795
2L	7931619	2L_7931619_SNP [dm3] 2L_7931619_SNP [dm6]	G	T	2.312e^-4	0.787	INTRON Snoo
2R	13770949	2R_13770949_SNP [dm3] 2R_17883444_SNP [dm6]	G	A	2.312e^-4	0.787	INTRON Elk
2R	16607973	2R_16607973_SNP [dm3] 2R_20720468_SNP [dm6]	T	A	2.316e^-4	0.787	INTRON dpr
3R	19075969	3R_19075969_SNP [dm3] 3R_23250247_SNP [dm6]	T	A	2.318e^-4	0.787	INTRON CG4449
2R	5283768	2R_5283768_SNP [dm3] 2R_9396263_SNP [dm6]	C	T	2.320e^-4	0.787	UPSTREAM CG8800 DOWNSTREAM CG8801 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	12331100	2L_12331100_DEL [dm3] 2L_12331100_DEL [dm6]	ATGGTTA	A	2.326e^-4	0.787	INTERGENIC
3L	8330134	3L_8330134_SNP [dm3] 3L_8337034_SNP [dm6]	A	C	2.330e^-4	0.787	INTRON Cpr66Cb
2R	9335760	2R_9335760_SNP [dm3] 2R_13448255_SNP [dm6]	C	T	2.331e^-4	0.787	INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	7899820	3L_7899820_SNP [dm3] 3L_7906720_SNP [dm6]	G	A	2.337e^-4	0.787	INTRON pbl
3L	5031028	3L_5031028_SNP [dm3] 3L_5031028_SNP [dm6]	A	G	2.339e^-4	0.787	INTRON Con
3R	2653277	3R_2653277_SNP [dm3] 3R_6827555_SNP [dm6]	T	C	2.339e^-4	0.787	INTRON Scr	regulatory region REDfly_CRMs
2L	20970306	2L_20970306_SNP [dm3] 2L_20970306_SNP [dm6]	C	G	2.346e^-4	0.787	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19587774	2R_19587774_SNP [dm3] 2R_23700251_SNP [dm6]	A	G	2.347e^-4	0.787	INTRON CG4091
2R	9756844	2R_9756844_SNP [dm3] 2R_13869339_SNP [dm6]	G	A	2.348e^-4	0.787	INTRON shot
2L	16623208	2L_16623208_SNP [dm3] 2L_16623208_SNP [dm6]	A	T	2.351e^-4	0.787	INTRON CG42389
3L	5031130	3L_5031130_SNP [dm3] 3L_5031130_SNP [dm6]	A	G	2.352e^-4	0.787	INTRON Con
X	3529524	X_3529524_SNP [dm3] X_3635491_SNP [dm6]	T	C	2.363e^-4	0.787	INTRON AstA-R1
3L	5873572	3L_5873572_SNP [dm3] 3L_5880472_SNP [dm6]	C	T	2.363e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11305989	2L_11305989_SNP [dm3] 2L_11305989_SNP [dm6]	G	C	2.364e^-4	0.787	INTERGENIC	TF binding site mE1_TFBS_cad
2R	2443611	2R_2443611_SNP [dm3] 2R_6556106_SNP [dm6]	A	C	2.375e^-4	0.787	INTRON jing	TF binding site mE1_TFBS_sens
3L	15730774	3L_15730774_SNP [dm3] 3L_15737674_SNP [dm6]	T	C	2.376e^-4	0.787	INTERGENIC
3L	9660995	3L_9660995_SNP [dm3] 3L_9667895_SNP [dm6]	G	A	2.377e^-4	0.787	INTRON fry
2L	3893299	2L_3893299_SNP [dm3] 2L_3893299_SNP [dm6]	A	C	2.381e^-4	0.787	NON_SYNONYMOUS_CODING capu
2R	2094564	2R_2094564_SNP [dm3] 2R_6207059_SNP [dm6]	T	G	2.383e^-4	0.787	DOWNSTREAM CG17994 INTERGENIC
2R	7897368	2R_7897368_SNP [dm3] 2R_12009863_SNP [dm6]	A	C	2.386e^-4	0.787	INTRON otk	regulatory region REDfly_CRMs
X	22134063	X_22134063_SNP [dm3] X_22732227_SNP [dm6]	C	T	2.387e^-4	0.787	INTRON CR44997	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	744696	2L_744696_SNP [dm3] 2L_744696_SNP [dm6]	A	C	2.387e^-4	0.787	UPSTREAM Eaat2 INTERGENIC
3R	24826435	3R_24826435_SNP [dm3] 3R_29000713_SNP [dm6]	T	C	2.389e^-4	0.787	INTRON wat
2L	9709758	2L_9709758_SNP [dm3] 2L_9709758_SNP [dm6]	C	T	2.410e^-4	0.787	SYNONYMOUS_CODING CG4364 DOWNSTREAM pelo	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
2L	7046463	2L_7046463_SNP [dm3] 2L_7046463_SNP [dm6]	G	T	2.410e^-4	0.787	NON_SYNONYMOUS_CODING milt INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7046466	2L_7046466_SNP [dm3] 2L_7046466_SNP [dm6]	C	T	2.410e^-4	0.787	SYNONYMOUS_CODING milt INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13884305	3R_13884305_SNP [dm3] 3R_18058583_SNP [dm6]	A	T	2.411e^-4	0.787	INTERGENIC
3R	13884324	3R_13884324_SNP [dm3] 3R_18058602_SNP [dm6]	C	T	2.411e^-4	0.787	INTERGENIC
3L	5953996	3L_5953996_SNP [dm3] 3L_5960896_SNP [dm6]	G	A	2.413e^-4	0.787	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8907750	2R_8907750_SNP [dm3] 2R_13020245_SNP [dm6]	T	C	2.414e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	8088545	3L_8088545_SNP [dm3] 3L_8095445_SNP [dm6]	A	T	2.415e^-4	0.787	INTRON Ect4
2L	3848063	2L_3848063_SNP [dm3] 2L_3848063_SNP [dm6]	G	A	2.417e^-4	0.787	INTERGENIC
2R	15935127	2R_15935127_SNP [dm3] 2R_20047622_SNP [dm6]	T	G	2.417e^-4	0.787	INTERGENIC
3L	8755166	3L_8755166_SNP [dm3] 3L_8762066_SNP [dm6]	G	A	2.423e^-4	0.787	NON_SYNONYMOUS_CODING Fhos	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	25023628	3R_25023628_SNP [dm3] 3R_29197906_SNP [dm6]	T	C	2.437e^-4	0.787	SYNONYMOUS_CODING CG14515	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9931275	2R_9931275_SNP [dm3] 2R_14043770_SNP [dm6]	A	T	2.444e^-4	0.787	INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2L	10342126	2L_10342126_SNP [dm3] 2L_10342126_SNP [dm6]	G	A	2.445e^-4	0.787	UPSTREAM Sps2 DOWNSTREAM SamDC INTRON CG31715	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	19076182	3R_19076182_SNP [dm3] 3R_23250460_SNP [dm6]	C	T	2.456e^-4	0.787	SYNONYMOUS_CODING CG4449
2L	7165330	2L_7165330_INS [dm3] 2L_7165330_INS [dm6]	A	AATAAGAA	2.474e^-4	0.787	INTERGENIC
2L	13033987	2L_13033987_SNP [dm3] 2L_13033987_SNP [dm6]	T	C	2.478e^-4	0.787	INTRON CG9932
X	4632616	X_4632616_SNP [dm3] X_4738583_SNP [dm6]	T	C	2.478e^-4	0.787	INTERGENIC
3L	11488708	3L_11488708_DEL [dm3] 3L_11495608_DEL [dm6]	AGACA	A	2.486e^-4	0.787	UTR_3_PRIME chrb	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3R	25260110	3R_25260110_SNP [dm3] 3R_29434388_SNP [dm6]	G	C	2.501e^-4	0.787	INTRON Ptp99A
3L	4307337	3L_4307337_SNP [dm3] 3L_4307337_SNP [dm6]	T	A	2.503e^-4	0.787	INTRON dyl
2L	6030374	2L_6030374_SNP [dm3] 2L_6030374_SNP [dm6]	C	G	2.507e^-4	0.787	INTRON CG9109
2R	16428356	2R_16428356_SNP [dm3] 2R_20540851_SNP [dm6]	C	T	2.508e^-4	0.787	UPSTREAM CG13428 EXON CR44652	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	9376757	3R_9376757_DEL [dm3] 3R_13551035_DEL [dm6]	TGAAGCC	T	2.508e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13884301	3R_13884301_SNP [dm3] 3R_18058579_SNP [dm6]	T	A	2.513e^-4	0.787	INTERGENIC
2L	3455386	2L_3455386_SNP [dm3] 2L_3455386_SNP [dm6]	T	A	2.515e^-4	0.787	SYNONYMOUS_CODING Cog3
2R	11907864	2R_11907864_SNP [dm3] 2R_16020359_SNP [dm6]	T	C	2.516e^-4	0.787	INTRON CG8399
2R	85901	2R_85901_SNP [dm3] 2R_4198396_SNP [dm6]	A	G	2.517e^-4	0.787	INTERGENIC
3R	7800347	3R_7800347_SNP [dm3] 3R_11974625_SNP [dm6]	A	G	2.517e^-4	0.787	UTR_5_PRIME Tango9 DOWNSTREAM CG10005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	22094242	3R_22094242_SNP [dm3] 3R_26268520_SNP [dm6]	C	T	2.518e^-4	0.787	SYNONYMOUS_CODING CG6154	TF binding site BDTNP1_TFBS_sna
2L	3899247	2L_3899247_SNP [dm3] 2L_3899247_SNP [dm6]	C	A	2.522e^-4	0.787	INTRON capu
3L	5873555	3L_5873555_SNP [dm3] 3L_5880455_SNP [dm6]	G	T	2.527e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5873556	3L_5873556_SNP [dm3] 3L_5880456_SNP [dm6]	G	A	2.527e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7123279	2L_7123279_SNP [dm3] 2L_7123279_SNP [dm6]	G	A	2.529e^-4	0.787	INTRON Pvf3
3L	18918776	3L_18918776_SNP [dm3] 3L_18925676_SNP [dm6]	A	T	2.530e^-4	0.787	INTRON CG32204 & 1 other
2L	20434314	2L_20434314_SNP [dm3] 2L_20434314_SNP [dm6]	G	A	2.531e^-4	0.787	INTRON CG31688
2L	22650824	2L_22650824_SNP [dm3] 2L_22758092_SNP [dm6]	C	T	2.534e^-4	0.787	INTERGENIC
3L	8521839	3L_8521839_SNP [dm3] 3L_8528739_SNP [dm6]	G	T	2.541e^-4	0.787	UTR_5_PRIME foi INTRON foi
X	11422505	X_11422505_SNP [dm3] X_11528472_SNP [dm6]	G	A	2.542e^-4	0.787	INTRON Drak	TF binding site BDTNP1_TFBS_dl
2R	11873745	2R_11873745_SNP [dm3] 2R_15986240_SNP [dm6]	C	A	2.560e^-4	0.787	INTRON Strn-Mlck
2R	11779420	2R_11779420_SNP [dm3] 2R_15891915_SNP [dm6]	G	A	2.563e^-4	0.787	UPSTREAM sli INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	5873566	3L_5873566_SNP [dm3] 3L_5880466_SNP [dm6]	T	A	2.564e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18565393	3L_18565393_SNP [dm3] 3L_18572293_SNP [dm6]	C	A	2.564e^-4	0.787	INTRON AstC-R1
2L	16210320	2L_16210320_SNP [dm3] 2L_16210320_SNP [dm6]	G	T	2.568e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11927609	2R_11927609_DEL [dm3] 2R_16040104_DEL [dm6]	AA	A	2.571e^-4	0.787	INTRON SP2353	TF binding site mE1_TFBS_cad
3L	5463069	3L_5463069_SNP [dm3] 3L_5469969_SNP [dm6]	C	T	2.573e^-4	0.787	INTERGENIC
3R	27208708	3R_27208708_SNP [dm3] 3R_31382986_SNP [dm6]	A	T	2.575e^-4	0.787	INTRON CG1607
2R	10319356	2R_10319356_SNP [dm3] 2R_14431851_SNP [dm6]	G	T	2.579e^-4	0.787	INTRON phyl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3871905	2L_3871905_SNP [dm3] 2L_3871905_SNP [dm6]	G	C	2.581e^-4	0.787	DOWNSTREAM Cep97 & 1 other INTRON CG31957	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	12865198	2L_12865198_DEL [dm3] 2L_12865198_DEL [dm6]	ATAA	A	2.589e^-4	0.788	INTERGENIC
2L	5128655	2L_5128655_SNP [dm3] 2L_5128655_SNP [dm6]	A	T	2.607e^-4	0.788	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10130721	3L_10130721_SNP [dm3] 3L_10137621_SNP [dm6]	G	T	2.608e^-4	0.788	INTRON dpr6
3L	10130727	3L_10130727_SNP [dm3] 3L_10137627_SNP [dm6]	C	T	2.608e^-4	0.788	INTRON dpr6
X	21472406	X_21472406_SNP [dm3] X_21601379_SNP [dm6]	A	T	2.609e^-4	0.788	NON_SYNONYMOUS_CODING CG14476	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1656828	3L_1656828_SNP [dm3] 3L_1656828_SNP [dm6]	C	G	2.617e^-4	0.788	NON_SYNONYMOUS_CODING CG7971	TF binding site mE1_TFBS_chinmo
X	2703850	X_2703850_SNP [dm3] X_2809817_SNP [dm6]	T	A	2.617e^-4	0.788	UPSTREAM CG12498 INTRON kirre
X	19699588	X_19699588_SNP [dm3] X_19805555_SNP [dm6]	G	A	2.618e^-4	0.788	INTERGENIC
3L	4307328	3L_4307328_SNP [dm3] 3L_4307328_SNP [dm6]	A	T	2.629e^-4	0.79	INTRON dyl
X	18164952	X_18164952_SNP [dm3] X_18270919_SNP [dm6]	C	T	2.638e^-4	0.791	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	13884364	3R_13884364_SNP [dm3] 3R_18058642_SNP [dm6]	G	A	2.645e^-4	0.792	INTERGENIC
X	21477038	X_21477038_INS [dm3] X_21606011_INS [dm6]	A	ACA	2.650e^-4	0.792	UTR_3_PRIME CG17450 UPSTREAM CG14476	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	26483862	3R_26483862_SNP [dm3] 3R_30658140_SNP [dm6]	A	G	2.651e^-4	0.792	INTERGENIC
2L	5469168	2L_5469168_SNP [dm3] 2L_5469168_SNP [dm6]	A	G	2.658e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
X	21496033	X_21496033_SNP [dm3] X_21625006_SNP [dm6]	A	T	2.681e^-4	0.798	UTR_3_PRIME DIP1 DOWNSTREAM DIP1
X	9212193	X_9212193_SNP [dm3] X_9318160_SNP [dm6]	A	T	2.688e^-4	0.799	UTR_3_PRIME c12.1	TF binding site mE1_TFBS_cad
X	7778650	X_7778650_SNP [dm3] X_7884617_SNP [dm6]	T	G	2.694e^-4	0.799	UPSTREAM Ir7g & 1 other INTERGENIC
2R	13719709	2R_13719709_INS [dm3] 2R_17832204_INS [dm6]	A	AA	2.713e^-4	0.801	INTRON grh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10285685	X_10285685_SNP [dm3] X_10391652_SNP [dm6]	A	C	2.733e^-4	0.801	INTRON flw
2L	1554755	2L_1554755_SNP [dm3] 2L_1554755_SNP [dm6]	G	A	2.737e^-4	0.801	UPSTREAM haf INTERGENIC	TF binding site mE1_TFBS_HSA
3L	15590611	3L_15590611_SNP [dm3] 3L_15597511_SNP [dm6]	G	A	2.742e^-4	0.801	INTRON RhoGAP71E
3L	8748960	3L_8748960_SNP [dm3] 3L_8755860_SNP [dm6]	T	A	2.743e^-4	0.801	UPSTREAM CG6576 INTRON Fhos
2L	6136293	2L_6136293_SNP [dm3] 2L_6136293_SNP [dm6]	T	C	2.748e^-4	0.801	INTERGENIC
3R	20469994	3R_20469994_SNP [dm3] 3R_24644272_SNP [dm6]	G	C	2.756e^-4	0.801	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3871951	2L_3871951_SNP [dm3] 2L_3871951_SNP [dm6]	A	T	2.764e^-4	0.801	DOWNSTREAM Cep97 & 1 other INTRON CG31957	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	3871953	2L_3871953_SNP [dm3] 2L_3871953_SNP [dm6]	C	T	2.764e^-4	0.801	DOWNSTREAM Cep97 & 1 other INTRON CG31957	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	3627213	3L_3627213_SNP [dm3] 3L_3627213_SNP [dm6]	T	C	2.764e^-4	0.801	INTRON dar1
2R	13463998	2R_13463998_SNP [dm3] 2R_17576493_SNP [dm6]	T	A	2.765e^-4	0.801	SYNONYMOUS_CODING Dcr-2	TF binding site mE1_TFBS_sens
3R	12429378	3R_12429378_SNP [dm3] 3R_16603656_SNP [dm6]	T	A	2.770e^-4	0.801	INTRON CG10345
X	21498669	X_21498669_SNP [dm3] X_21627642_SNP [dm6]	T	C	2.777e^-4	0.801	INTRON DIP1	transposable element FlyBase
X	18164774	X_18164774_INS [dm3] X_18270741_INS [dm6]	C	CCC	2.780e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11467337	2R_11467337_SNP [dm3] 2R_15579832_SNP [dm6]	G	T	2.788e^-4	0.801	INTERGENIC
3R	13884375	3R_13884375_SNP [dm3] 3R_18058653_SNP [dm6]	C	T	2.798e^-4	0.801	INTERGENIC
3R	13884379	3R_13884379_SNP [dm3] 3R_18058657_SNP [dm6]	C	A	2.798e^-4	0.801	INTERGENIC
3R	13884381	3R_13884381_MNP [dm3] 3R_18058659_MNP [dm6]	CTC	AAT	2.798e^-4	0.801	INTERGENIC
2L	15852844	2L_15852844_SNP [dm3] 2L_15852844_SNP [dm6]	C	T	2.800e^-4	0.801	SYNONYMOUS_CODING CG13243
3R	14375526	3R_14375526_SNP [dm3] 3R_18549804_SNP [dm6]	G	T	2.801e^-4	0.801	INTERGENIC
2L	16409777	2L_16409777_DEL [dm3] 2L_16409777_DEL [dm6]	AGGCTATCA	A	2.819e^-4	0.801	INTRON CG5888
2R	12359573	2R_12359573_SNP [dm3] 2R_16472068_SNP [dm6]	A	T	2.820e^-4	0.801	INTERGENIC
X	22140537	X_22140537_SNP [dm3] X_22738701_SNP [dm6]	A	G	2.821e^-4	0.801	INTRON CR44997	transposable element FlyBase
3R	12537506	3R_12537506_SNP [dm3] 3R_16711784_SNP [dm6]	A	G	2.825e^-4	0.801	INTRON Ubx	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13176472	2R_13176472_SNP [dm3] 2R_17288967_SNP [dm6]	A	T	2.828e^-4	0.801	INTRON mbl
2L	20431120	2L_20431120_SNP [dm3] 2L_20431120_SNP [dm6]	C	G	2.833e^-4	0.801	INTRON CG31688
2L	20431163	2L_20431163_SNP [dm3] 2L_20431163_SNP [dm6]	A	G	2.833e^-4	0.801	INTRON CG31688
X	8387880	X_8387880_SNP [dm3] X_8493847_SNP [dm6]	C	G	2.834e^-4	0.801	INTRON CG33181
2R	4172527	2R_4172527_INS [dm3] 2R_8285022_INS [dm6]	A	CT	2.835e^-4	0.801	INTERGENIC
2L	15634690	2L_15634690_SNP [dm3] 2L_15634690_SNP [dm6]	G	A	2.853e^-4	0.801	UTR_3_PRIME CG18480
2R	10539131	2R_10539131_SNP [dm3] 2R_14651626_SNP [dm6]	A	T	2.864e^-4	0.801	INTERGENIC
3L	21710621	3L_21710621_SNP [dm3] 3L_21717521_SNP [dm6]	A	T	2.869e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	15684239	X_15684239_SNP [dm3] X_15790206_SNP [dm6]	T	C	2.870e^-4	0.801	INTRON Rhp
3L	5031151	3L_5031151_SNP [dm3] 3L_5031151_SNP [dm6]	T	C	2.885e^-4	0.801	INTRON Con
3L	11320797	3L_11320797_SNP [dm3] 3L_11327697_SNP [dm6]	A	G	2.885e^-4	0.801	INTERGENIC
2L	20086523	2L_20086523_DEL [dm3] 2L_20086523_DEL [dm6]	ACATA	A	2.886e^-4	0.801	INTRON neb
2L	16208053	2L_16208053_SNP [dm3] 2L_16208053_SNP [dm6]	A	G	2.892e^-4	0.801	INTERGENIC
3R	7975860	3R_7975860_SNP [dm3] 3R_12150138_SNP [dm6]	C	T	2.892e^-4	0.801	INTRON dpr15
3R	24826854	3R_24826854_SNP [dm3] 3R_29001132_SNP [dm6]	A	G	2.894e^-4	0.801	INTRON wat
3L	10130696	3L_10130696_SNP [dm3] 3L_10137596_SNP [dm6]	T	A	2.900e^-4	0.801	INTRON dpr6
2L	1553730	2L_1553730_SNP [dm3] 2L_1553730_SNP [dm6]	G	A	2.909e^-4	0.801	INTERGENIC
2L	769817	2L_769817_SNP [dm3] 2L_769817_SNP [dm6]	T	A	2.913e^-4	0.801	INTERGENIC
2L	20431235	2L_20431235_SNP [dm3] 2L_20431235_SNP [dm6]	A	G	2.915e^-4	0.801	INTRON CG31688
2R	16978897	2R_16978897_SNP [dm3] 2R_21091392_SNP [dm6]	T	C	2.918e^-4	0.801	UPSTREAM Rbpn-5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3479157	2L_3479157_SNP [dm3] 2L_3479157_SNP [dm6]	A	C	2.920e^-4	0.801	INTRON Thor	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	944348	X_944348_DEL [dm3] X_1050315_DEL [dm6]	TT	T	2.925e^-4	0.801	INTRON CR44779
X	946674	X_946674_SNP [dm3] X_1052641_SNP [dm6]	C	T	2.928e^-4	0.801	DOWNSTREAM CG14629 INTRON CR44779
X	3171244	X_3171244_SNP [dm3] X_3277211_SNP [dm6]	T	G	2.929e^-4	0.801	INTRON dnc
X	21428437	X_21428437_SNP [dm3] X_21557410_SNP [dm6]	T	G	2.944e^-4	0.801	INTERGENIC
2L	6325059	2L_6325059_SNP [dm3] 2L_6325059_SNP [dm6]	G	T	2.949e^-4	0.801	INTRON PDZ-GEF	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
X	18711021	X_18711021_SNP [dm3] X_18816988_SNP [dm6]	T	A	2.950e^-4	0.801	INTRON CG42450
3L	12311329	3L_12311329_SNP [dm3] 3L_12318229_SNP [dm6]	T	A	2.953e^-4	0.801	INTERGENIC
3L	12311332	3L_12311332_SNP [dm3] 3L_12318232_SNP [dm6]	T	A	2.953e^-4	0.801	INTERGENIC
2L	2944106	2L_2944106_SNP [dm3] 2L_2944106_SNP [dm6]	A	C	2.955e^-4	0.801	INTRON lilli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2R	17083206	2R_17083206_SNP [dm3] 2R_21195701_SNP [dm6]	G	A	2.958e^-4	0.801	INTRON Lapsyn
3L	1657743	3L_1657743_SNP [dm3] 3L_1657743_SNP [dm6]	C	T	2.966e^-4	0.801	NON_SYNONYMOUS_CODING CG7971
3L	1657795	3L_1657795_SNP [dm3] 3L_1657795_SNP [dm6]	T	C	2.966e^-4	0.801	SYNONYMOUS_CODING CG7971
X	2703881	X_2703881_SNP [dm3] X_2809848_SNP [dm6]	C	T	2.966e^-4	0.801	UPSTREAM CG12498 INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6735888	2L_6735888_SNP [dm3] 2L_6735888_SNP [dm6]	C	A	2.976e^-4	0.801	UTR_3_PRIME TTLL3B DOWNSTREAM TTLL3A
X	13576729	X_13576729_SNP [dm3] X_13682696_SNP [dm6]	T	C	2.977e^-4	0.801	UPSTREAM CG11158 INTERGENIC
3L	10130707	3L_10130707_SNP [dm3] 3L_10137607_SNP [dm6]	A	G	2.983e^-4	0.801	INTRON dpr6
3L	5031073	3L_5031073_SNP [dm3] 3L_5031073_SNP [dm6]	T	G	2.991e^-4	0.801	INTRON Con
X	21499265	X_21499265_INS [dm3] X_21628238_INS [dm6]	T	TT	2.991e^-4	0.801	INTRON DIP1	transposable element FlyBase
2L	13422020	2L_13422020_SNP [dm3] 2L_13422020_SNP [dm6]	T	C	2.993e^-4	0.801	INTRON CG42784
2L	20126592	2L_20126592_SNP [dm3] 2L_20126592_SNP [dm6]	C	A	2.995e^-4	0.801	INTERGENIC
2L	15858973	2L_15858973_SNP [dm3] 2L_15858973_SNP [dm6]	A	T	2.998e^-4	0.801	INTERGENIC
3R	11593798	3R_11593798_SNP [dm3] 3R_15768076_SNP [dm6]	A	G	3.005e^-4	0.801	UPSTREAM CG5623 INTERGENIC
2L	6325029	2L_6325029_SNP [dm3] 2L_6325029_SNP [dm6]	G	A	3.011e^-4	0.801	INTRON PDZ-GEF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	3850859	3L_3850859_SNP [dm3] 3L_3850859_SNP [dm6]	C	G	3.020e^-4	0.801	INTRON Awh
2R	11467377	2R_11467377_SNP [dm3] 2R_15579872_SNP [dm6]	T	G	3.020e^-4	0.801	INTERGENIC
3L	21231024	3L_21231024_SNP [dm3] 3L_21237924_SNP [dm6]	T	G	3.024e^-4	0.801	INTRON Eip78C	transposable element FlyBase
2R	19136505	2R_19136505_SNP [dm3] 2R_23248982_SNP [dm6]	T	A	3.036e^-4	0.801	INTERGENIC
3R	9911251	3R_9911251_SNP [dm3] 3R_14085529_SNP [dm6]	T	C	3.040e^-4	0.801	INTRON foxo
3L	20822905	3L_20822905_SNP [dm3] 3L_20829805_SNP [dm6]	A	T	3.043e^-4	0.801	INTRON Pka-R1
X	4863220	X_4863220_SNP [dm3] X_4969187_SNP [dm6]	A	G	3.051e^-4	0.801	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	22134146	X_22134146_SNP [dm3] X_22732310_SNP [dm6]	C	A	3.066e^-4	0.801	INTRON CR44997	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	20109904	2L_20109904_SNP [dm3] 2L_20109904_SNP [dm6]	C	T	3.067e^-4	0.801	INTERGENIC
2L	770236	2L_770236_SNP [dm3] 2L_770236_SNP [dm6]	T	A	3.068e^-4	0.801	INTERGENIC
2R	12722763	2R_12722763_SNP [dm3] 2R_16835258_SNP [dm6]	G	A	3.068e^-4	0.801	EXON CR43650	TF binding site mE1_TFBS_cad
X	2448960	X_2448960_SNP [dm3] X_2554927_SNP [dm6]	G	C	3.072e^-4	0.801	INTRON Pdfr
2R	788852	2R_788852_SNP [dm3] 2R_4901347_SNP [dm6]	A	T	3.076e^-4	0.801	INTRON CG44102	transposable element FlyBase
3L	18140902	3L_18140902_SNP [dm3] 3L_18147802_SNP [dm6]	C	T	3.079e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	5885789	2L_5885789_SNP [dm3] 2L_5885789_SNP [dm6]	T	C	3.080e^-4	0.801	UPSTREAM CG9029 DOWNSTREAM CG43185 INTERGENIC
2L	15859103	2L_15859103_SNP [dm3] 2L_15859103_SNP [dm6]	C	G	3.088e^-4	0.801	INTERGENIC
X	2703855	X_2703855_SNP [dm3] X_2809822_SNP [dm6]	A	T	3.088e^-4	0.801	UPSTREAM CG12498 INTRON kirre
X	21472890	X_21472890_SNP [dm3] X_21601863_SNP [dm6]	T	C	3.090e^-4	0.801	SYNONYMOUS_CODING CG14476	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	13576721	X_13576721_SNP [dm3] X_13682688_SNP [dm6]	A	T	3.096e^-4	0.801	UPSTREAM CG11158 INTERGENIC
2L	6885844	2L_6885844_SNP [dm3] 2L_6885844_SNP [dm6]	T	C	3.098e^-4	0.801	INTRON Nlg2
3L	16664605	3L_16664605_SNP [dm3] 3L_16671505_SNP [dm6]	T	G	3.100e^-4	0.801	UPSTREAM CR45241 DOWNSTREAM zetaCOP INTERGENIC	TF binding site mE1_TFBS_cad
3R	15061874	3R_15061874_SNP [dm3] 3R_19236152_SNP [dm6]	G	A	3.102e^-4	0.801	INTRON unc79
3L	12306947	3L_12306947_SNP [dm3] 3L_12313847_SNP [dm6]	T	C	3.106e^-4	0.801	INTERGENIC
2L	2944558	2L_2944558_SNP [dm3] 2L_2944558_SNP [dm6]	A	T	3.112e^-4	0.801	INTRON lilli	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	4863222	X_4863222_SNP [dm3] X_4969189_SNP [dm6]	G	A	3.115e^-4	0.801	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	1632334	3L_1632334_SNP [dm3] 3L_1632334_SNP [dm6]	G	C	3.115e^-4	0.801	NON_SYNONYMOUS_CODING nSyb UTR_3_PRIME nSyb
2L	7252531	2L_7252531_SNP [dm3] 2L_7252531_SNP [dm6]	T	A	3.121e^-4	0.801	NON_SYNONYMOUS_CODING CG13786
3L	5872434	3L_5872434_SNP [dm3] 3L_5879334_SNP [dm6]	A	T	3.132e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16762285	3R_16762285_SNP [dm3] 3R_20936563_SNP [dm6]	T	G	3.132e^-4	0.801	INTRON CG31191
3R	25917858	3R_25917858_SNP [dm3] 3R_30092136_SNP [dm6]	T	C	3.135e^-4	0.801	INTRON sima
2R	18113525	2R_18113525_SNP [dm3] 2R_22226020_SNP [dm6]	G	A	3.136e^-4	0.801	SYNONYMOUS_CODING Oatp58Dc
X	22126876	X_22126876_SNP [dm3] X_22725040_SNP [dm6]	A	G	3.147e^-4	0.801	INTRON CR44997
2L	3097313	2L_3097313_SNP [dm3] 2L_3097313_SNP [dm6]	C	A	3.152e^-4	0.801	INTRON toc
2L	16472255	2L_16472255_SNP [dm3] 2L_16472255_SNP [dm6]	C	T	3.156e^-4	0.801	SYNONYMOUS_CODING dac	TF binding site mE1_TFBS_cad
2L	20777622	2L_20777622_SNP [dm3] 2L_20777622_SNP [dm6]	A	G	3.158e^-4	0.801	INTRON cad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12883231	3L_12883231_SNP [dm3] 3L_12890131_SNP [dm6]	C	T	3.192e^-4	0.801	UTR_5_PRIME CG43894 UPSTREAM CR45748 DOWNSTREAM CG14120
2R	4158349	2R_4158349_SNP [dm3] 2R_8270844_SNP [dm6]	T	G	3.193e^-4	0.801	INTERGENIC
2R	17033740	2R_17033740_SNP [dm3] 2R_21146235_SNP [dm6]	C	T	3.193e^-4	0.801	UTR_5_PRIME Hmg-2 DOWNSTREAM Xbp1	TF binding site mE1_TFBS_cad
X	10051818	X_10051818_SNP [dm3] X_10157785_SNP [dm6]	A	C	3.203e^-4	0.801	UPSTREAM CG43902 INTRON CR44894
3L	21166915	3L_21166915_SNP [dm3] 3L_21173815_SNP [dm6]	C	G	3.208e^-4	0.801	NON_SYNONYMOUS_CODING asparagine-synthetase INTRON chb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18770958	2L_18770958_SNP [dm3] 2L_18770958_SNP [dm6]	G	T	3.211e^-4	0.801	INTRON ham
X	14683777	X_14683777_SNP [dm3] X_14789744_SNP [dm6]	T	G	3.212e^-4	0.801	NON_SYNONYMOUS_CODING rut UTR_3_PRIME rut	TF binding site mE1_TFBS_cad
3R	26122670	3R_26122670_SNP [dm3] 3R_30296948_SNP [dm6]	A	T	3.212e^-4	0.801	INTRON hdc	TF binding site mE1_TFBS_inv
X	22140405	X_22140405_SNP [dm3] X_22738569_SNP [dm6]	T	A	3.214e^-4	0.801	INTRON CR44997
2R	8455156	2R_8455156_SNP [dm3] 2R_12567651_SNP [dm6]	A	G	3.218e^-4	0.801	SPLICE_SITE_REGION Cyp301a1 SYNONYMOUS_CODING Cyp301a1
2L	12902824	2L_12902824_SNP [dm3] 2L_12902824_SNP [dm6]	T	C	3.220e^-4	0.801	INTERGENIC
2L	7944437	2L_7944437_SNP [dm3] 2L_7944437_SNP [dm6]	G	A	3.221e^-4	0.801	INTRON Snoo
3L	9587953	3L_9587953_SNP [dm3] 3L_9594853_SNP [dm6]	G	T	3.225e^-4	0.801	DOWNSTREAM CG42673 INTRON CG42673
2R	11603849	2R_11603849_SNP [dm3] 2R_15716344_SNP [dm6]	G	C	3.234e^-4	0.801	INTERGENIC
3R	18925919	3R_18925919_SNP [dm3] 3R_23100197_SNP [dm6]	G	A	3.237e^-4	0.801	SYNONYMOUS_CODING CG6738 INTRON CG13830
3L	10723600	3L_10723600_SNP [dm3] 3L_10730500_SNP [dm6]	A	G	3.243e^-4	0.801	INTERGENIC
X	20330439	X_20330439_SNP [dm3] X_20459412_SNP [dm6]	A	C	3.248e^-4	0.801	INTRON CG32506
X	20329220	X_20329220_SNP [dm3] X_20458193_SNP [dm6]	A	C	3.254e^-4	0.801	INTRON CG32506
2L	3479916	2L_3479916_SNP [dm3] 2L_3479916_SNP [dm6]	C	T	3.255e^-4	0.801	DOWNSTREAM Thor & 1 other INTERGENIC
2L	11593367	2L_11593367_SNP [dm3] 2L_11593367_SNP [dm6]	A	G	3.271e^-4	0.801	INTRON kek2
2L	11593410	2L_11593410_SNP [dm3] 2L_11593410_SNP [dm6]	T	C	3.271e^-4	0.801	INTRON kek2
2L	2448320	2L_2448320_SNP [dm3] 2L_2448320_SNP [dm6]	G	A	3.273e^-4	0.801	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9564336	2R_9564336_SNP [dm3] 2R_13676831_SNP [dm6]	C	G	3.273e^-4	0.801	INTRON fas	TF binding site BDTNP1_TFBS_twi
2R	9564347	2R_9564347_SNP [dm3] 2R_13676842_SNP [dm6]	T	C	3.273e^-4	0.801	INTRON fas	TF binding site BDTNP1_TFBS_twi
2L	11593362	2L_11593362_SNP [dm3] 2L_11593362_SNP [dm6]	G	A	3.278e^-4	0.801	INTRON kek2
3L	11322188	3L_11322188_SNP [dm3] 3L_11329088_SNP [dm6]	G	A	3.279e^-4	0.801	INTERGENIC
2L	18433219	2L_18433219_SNP [dm3] 2L_18433219_SNP [dm6]	G	A	3.291e^-4	0.801	UPSTREAM CR44488 INTERGENIC
2L	390526	2L_390526_INS [dm3] 2L_390526_INS [dm6]	A	TT	3.294e^-4	0.801	INTERGENIC
2R	10113503	2R_10113503_SNP [dm3] 2R_14225998_SNP [dm6]	G	C	3.298e^-4	0.801	INTRON CG8468	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8646296	2L_8646296_SNP [dm3] 2L_8646296_SNP [dm6]	T	C	3.304e^-4	0.801	INTRON Sema-1a
2R	566566	2R_566566_SNP [dm3] 2R_4679061_SNP [dm6]	T	A	3.305e^-4	0.801	INTERGENIC
3L	17307941	3L_17307941_SNP [dm3] 3L_17314841_SNP [dm6]	G	A	3.306e^-4	0.801	UPSTREAM mir-219 INTERGENIC	TF binding site mE1_TFBS_cad
2L	15990276	2L_15990276_SNP [dm3] 2L_15990276_SNP [dm6]	T	C	3.311e^-4	0.801	DOWNSTREAM CR43412 INTERGENIC
3R	26069924	3R_26069924_SNP [dm3] 3R_30244202_SNP [dm6]	T	C	3.312e^-4	0.801	SYNONYMOUS_CODING CG9733 UPSTREAM CG9737
2L	109129	2L_109129_SNP [dm3] 2L_109129_SNP [dm6]	G	T	3.315e^-4	0.801	UPSTREAM Sam-S INTRON Sam-S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1567772	2L_1567772_SNP [dm3] 2L_1567772_SNP [dm6]	T	G	3.323e^-4	0.801	INTRON haf
3R	13204251	3R_13204251_SNP [dm3] 3R_17378529_SNP [dm6]	A	T	3.323e^-4	0.801	INTRON Brf
3L	10723290	3L_10723290_SNP [dm3] 3L_10730190_SNP [dm6]	A	G	3.336e^-4	0.801	INTERGENIC
3R	15120517	3R_15120517_SNP [dm3] 3R_19294795_SNP [dm6]	A	T	3.339e^-4	0.801	INTERGENIC
X	10285759	X_10285759_SNP [dm3] X_10391726_SNP [dm6]	T	C	3.343e^-4	0.801	INTRON flw
2L	20107170	2L_20107170_SNP [dm3] 2L_20107170_SNP [dm6]	G	T	3.346e^-4	0.801	INTERGENIC	transposable element FlyBase
3L	521423	3L_521423_SNP [dm3] 3L_521423_SNP [dm6]	C	A	3.349e^-4	0.801	INTRON klar
3L	7958285	3L_7958285_SNP [dm3] 3L_7965185_SNP [dm6]	T	G	3.349e^-4	0.801	INTERGENIC
3R	16610512	3R_16610512_SNP [dm3] 3R_20784790_SNP [dm6]	C	T	3.351e^-4	0.801	INTRON Syp	TF binding site mE1_TFBS_chinmo
X	21498323	X_21498323_INS [dm3] X_21627296_INS [dm6]	A	ATA	3.352e^-4	0.801	INTRON DIP1	transposable element FlyBase
2R	11467402	2R_11467402_SNP [dm3] 2R_15579897_SNP [dm6]	T	G	3.363e^-4	0.801	INTERGENIC
X	3006822	X_3006822_SNP [dm3] X_3112789_SNP [dm6]	C	T	3.367e^-4	0.801	INTRON kirre
3L	16336240	3L_16336240_SNP [dm3] 3L_16343140_SNP [dm6]	T	C	3.373e^-4	0.801	NON_SYNONYMOUS_CODING CG4998 INTRON CG4998	TF binding site mE1_TFBS_cad
3R	11106048	3R_11106048_SNP [dm3] 3R_15280326_SNP [dm6]	A	G	3.374e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14035649	2R_14035649_SNP [dm3] 2R_18148144_SNP [dm6]	A	G	3.381e^-4	0.801	UTR_3_PRIME CG5742 UPSTREAM CG17680 DOWNSTREAM pAbp & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16568256	2R_16568256_SNP [dm3] 2R_20680751_SNP [dm6]	T	A	3.384e^-4	0.801	INTERGENIC
2L	1553881	2L_1553881_SNP [dm3] 2L_1553881_SNP [dm6]	A	T	3.388e^-4	0.801	INTERGENIC
2R	1581652	2R_1581652_SNP [dm3] 2R_5694147_SNP [dm6]	C	A	3.391e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	22898136	3R_22898136_SNP [dm3] 3R_27072414_SNP [dm6]	A	G	3.391e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_cad
2L	20105047	2L_20105047_SNP [dm3] 2L_20105047_SNP [dm6]	G	T	3.393e^-4	0.801	UPSTREAM CG13970 INTERGENIC	transposable element FlyBase
3R	27527364	3R_27527364_DEL [dm3] 3R_31701642_DEL [dm6]	CTTATTGTGC	C	3.396e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_sens
3L	505660	3L_505660_SNP [dm3] 3L_505660_SNP [dm6]	G	T	3.399e^-4	0.801	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	15848186	2L_15848186_SNP [dm3] 2L_15848186_SNP [dm6]	T	C	3.403e^-4	0.801	DOWNSTREAM CR43763 INTERGENIC
3R	2645017	3R_2645017_SNP [dm3] 3R_6819295_SNP [dm6]	A	G	3.408e^-4	0.801	UPSTREAM tRNA:K5:84ABd DOWNSTREAM 7SLRNA:CR42652 EXON tRNA:CR31485:Psi	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16429921	2R_16429921_SNP [dm3] 2R_20542416_SNP [dm6]	A	T	3.421e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20315238	X_20315238_INS [dm3] X_20444211_INS [dm6]	G	GG	3.423e^-4	0.801	UTR_3_PRIME CG1695
X	13751438	X_13751438_SNP [dm3] X_13857405_SNP [dm6]	T	C	3.427e^-4	0.801	DOWNSTREAM mamo INTRON mamo
2R	18123797	2R_18123797_SNP [dm3] 2R_22236292_SNP [dm6]	C	G	3.432e^-4	0.801	DOWNSTREAM CR44755 INTERGENIC
2L	1553919	2L_1553919_SNP [dm3] 2L_1553919_SNP [dm6]	C	A	3.433e^-4	0.801	INTERGENIC
2L	1558021	2L_1558021_SNP [dm3] 2L_1558021_SNP [dm6]	A	G	3.439e^-4	0.801	INTRON haf
2L	1559178	2L_1559178_SNP [dm3] 2L_1559178_SNP [dm6]	G	A	3.439e^-4	0.801	INTRON haf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1560772	2L_1560772_SNP [dm3] 2L_1560772_SNP [dm6]	C	T	3.439e^-4	0.801	INTRON haf	TF binding site mE1_TFBS_eve
3L	12179963	3L_12179963_SNP [dm3] 3L_12186863_SNP [dm6]	G	A	3.441e^-4	0.801	SYNONYMOUS_CODING CG6910	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12525904	3L_12525904_SNP [dm3] 3L_12532804_SNP [dm6]	T	C	3.442e^-4	0.801	INTRON Tsf2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	15024767	3R_15024767_SNP [dm3] 3R_19199045_SNP [dm6]	G	T	3.446e^-4	0.801	INTRON CG31475
3R	2644485	3R_2644485_SNP [dm3] 3R_6818763_SNP [dm6]	A	T	3.447e^-4	0.801	DOWNSTREAM tRNA:CR31485:Psi INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	20123683	2L_20123683_SNP [dm3] 2L_20123683_SNP [dm6]	G	T	3.466e^-4	0.801	INTERGENIC
2L	19682576	2L_19682576_SNP [dm3] 2L_19682576_SNP [dm6]	G	A	3.467e^-4	0.801	INTRON Lar
X	5743499	X_5743499_SNP [dm3] X_5849466_SNP [dm6]	A	C	3.468e^-4	0.801	INTERGENIC
2L	20403411	2L_20403411_SNP [dm3] 2L_20403411_SNP [dm6]	C	G	3.469e^-4	0.801	INTRON CG10947
2L	13938588	2L_13938588_SNP [dm3] 2L_13938588_SNP [dm6]	G	T	3.478e^-4	0.801	INTRON Ance-3
2L	17908942	2L_17908942_SNP [dm3] 2L_17908942_SNP [dm6]	T	A	3.483e^-4	0.801	INTERGENIC
3R	14844989	3R_14844989_SNP [dm3] 3R_19019267_SNP [dm6]	C	T	3.485e^-4	0.801	NON_SYNONYMOUS_CODING gukh INTRON gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12791510	2R_12791510_SNP [dm3] 2R_16904005_SNP [dm6]	C	T	3.486e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	747069	2L_747069_SNP [dm3] 2L_747069_SNP [dm6]	G	A	3.489e^-4	0.801	INTERGENIC
3R	15168588	3R_15168588_DEL [dm3] 3R_19342866_DEL [dm6]	AGGAAATA	A	3.489e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	2390632	2L_2390632_SNP [dm3] 2L_2390632_SNP [dm6]	C	G	3.497e^-4	0.801	NON_SYNONYMOUS_CODING CG43750
3R	9376776	3R_9376776_SNP [dm3] 3R_13551054_SNP [dm6]	A	C	3.497e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	13720631	2L_13720631_SNP [dm3] 2L_13720631_SNP [dm6]	A	T	3.509e^-4	0.801	INTERGENIC
2L	13720632	2L_13720632_SNP [dm3] 2L_13720632_SNP [dm6]	A	T	3.509e^-4	0.801	INTERGENIC
2R	2763779	2R_2763779_SNP [dm3] 2R_6876274_SNP [dm6]	C	T	3.513e^-4	0.801	SPLICE_SITE_REGION CR44169 UTR_3_PRIME Spn42Da UPSTREAM CG9447 DOWNSTREAM Spn42Da INTRON Spn42Da EXON CR44169
3L	11592650	3L_11592650_SNP [dm3] 3L_11599550_SNP [dm6]	T	A	3.518e^-4	0.801	DOWNSTREAM CG14137 INTRON CG7368
3L	5374724	3L_5374724_SNP [dm3] 3L_5381624_SNP [dm6]	A	G	3.521e^-4	0.801	INTRON Ir64a
2R	11550314	2R_11550314_SNP [dm3] 2R_15662809_SNP [dm6]	G	A	3.527e^-4	0.801	NON_SYNONYMOUS_CODING fus INTRON fus	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9341715	2L_9341715_SNP [dm3] 2L_9341715_SNP [dm6]	A	T	3.528e^-4	0.801	UTR_3_PRIME Eaat1
3L	21732865	3L_21732865_SNP [dm3] 3L_21739765_SNP [dm6]	C	T	3.538e^-4	0.801	UTR_3_PRIME CG14566	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4611927	3L_4611927_SNP [dm3] 3L_4611927_SNP [dm6]	A	T	3.539e^-4	0.801	INTRON Src64B
X	1588193	X_1588193_SNP [dm3] X_1694160_SNP [dm6]	T	A	3.539e^-4	0.801	UTR_3_PRIME a6 DOWNSTREAM CG14798	TF binding site mE1_TFBS_chinmo
3L	6940329	3L_6940329_DEL [dm3] 3L_6947229_DEL [dm6]	ACA	A	3.542e^-4	0.801	INTRON tow
2R	1403296	2R_1403296_SNP [dm3] 2R_5515791_SNP [dm6]	T	G	3.546e^-4	0.801	INTRON CG30438
3L	9624767	3L_9624767_SNP [dm3] 3L_9631667_SNP [dm6]	C	A	3.560e^-4	0.803	SYNONYMOUS_CODING CG8336 DOWNSTREAM fry	TF binding site mE1_TFBS_cad
2L	1562394	2L_1562394_SNP [dm3] 2L_1562394_SNP [dm6]	G	A	3.571e^-4	0.804	INTRON haf
3R	10130331	3R_10130331_SNP [dm3] 3R_14304609_SNP [dm6]	T	A	3.572e^-4	0.804	UTR_3_PRIME su_Hw_ DOWNSTREAM CG3259
2R	1582083	2R_1582083_SNP [dm3] 2R_5694578_SNP [dm6]	A	G	3.580e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_kn
2L	7036341	2L_7036341_SNP [dm3] 2L_7036341_SNP [dm6]	G	A	3.582e^-4	0.804	SYNONYMOUS_CODING CG11266 UTR_3_PRIME CG11266	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11081481	2R_11081481_SNP [dm3] 2R_15193976_SNP [dm6]	C	G	3.586e^-4	0.804	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
X	5915798	X_5915798_SNP [dm3] X_6021765_SNP [dm6]	G	A	3.596e^-4	0.804	INTERGENIC
2L	19228350	2L_19228350_SNP [dm3] 2L_19228350_SNP [dm6]	C	A	3.604e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sbb
2L	5869968	2L_5869968_SNP [dm3] 2L_5869968_SNP [dm6]	G	C	3.607e^-4	0.804	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	13034109	2L_13034109_SNP [dm3] 2L_13034109_SNP [dm6]	G	C	3.610e^-4	0.804	INTRON CG9932
2L	19691403	2L_19691403_SNP [dm3] 2L_19691403_SNP [dm6]	T	C	3.611e^-4	0.804	INTRON Lar
3R	19075960	3R_19075960_SNP [dm3] 3R_23250238_SNP [dm6]	T	C	3.611e^-4	0.804	INTRON CG4449
2R	10113473	2R_10113473_SNP [dm3] 2R_14225968_SNP [dm6]	C	A	3.621e^-4	0.806	INTRON CG8468	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24068525	3R_24068525_SNP [dm3] 3R_28242803_SNP [dm6]	C	A	3.631e^-4	0.806	INTERGENIC
X	6542235	X_6542235_SNP [dm3] X_6648202_SNP [dm6]	G	A	3.644e^-4	0.806	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	22898062	3R_22898062_SNP [dm3] 3R_27072340_SNP [dm6]	T	C	3.645e^-4	0.806	INTERGENIC
X	12766273	X_12766273_SNP [dm3] X_12872240_SNP [dm6]	G	C	3.650e^-4	0.806	INTRON Pde9
2L	6020622	2L_6020622_SNP [dm3] 2L_6020622_SNP [dm6]	A	C	3.652e^-4	0.806	UPSTREAM CG13996 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8995994	2R_8995994_SNP [dm3] 2R_13108489_SNP [dm6]	A	T	3.654e^-4	0.806	INTERGENIC
3L	3058941	3L_3058941_SNP [dm3] 3L_3058941_SNP [dm6]	G	T	3.656e^-4	0.806	INTRON CG32486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
2R	11825149	2R_11825149_SNP [dm3] 2R_15937644_SNP [dm6]	T	C	3.659e^-4	0.806	INTRON Mlf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20141327	2L_20141327_SNP [dm3] 2L_20141327_SNP [dm6]	G	T	3.679e^-4	0.809	INTERGENIC
2R	17045498	2R_17045498_SNP [dm3] 2R_21157993_SNP [dm6]	A	G	3.680e^-4	0.809	UTR_5_PRIME CG30389 INTRON CG30389	TF binding site BDTNP1_TFBS_twi
2R	1591019	2R_1591019_SNP [dm3] 2R_5703514_SNP [dm6]	C	T	3.686e^-4	0.809	SYNONYMOUS_CODING vlc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19907300	3R_19907300_SNP [dm3] 3R_24081578_SNP [dm6]	C	G	3.702e^-4	0.809	INTRON 4EHP
3R	20799061	3R_20799061_SNP [dm3] 3R_24973339_SNP [dm6]	C	T	3.711e^-4	0.809	INTERGENIC
X	18808514	X_18808514_SNP [dm3] X_18914481_SNP [dm6]	T	A	3.714e^-4	0.809	INTERGENIC
3R	7800242	3R_7800242_SNP [dm3] 3R_11974520_SNP [dm6]	T	G	3.715e^-4	0.809	DOWNSTREAM CG10005 INTRON Tango9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	2497608	X_2497608_SNP [dm3] X_2603575_SNP [dm6]	A	G	3.717e^-4	0.809	SYNONYMOUS_CODING Klp3A UPSTREAM Zw10	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	22118393	X_22118393_DEL [dm3] X_22716557_DEL [dm6]	AA	A	3.718e^-4	0.809	INTRON CR44997
3L	11933628	3L_11933628_SNP [dm3] 3L_11940528_SNP [dm6]	C	A	3.723e^-4	0.809	INTERGENIC
X	3006827	X_3006827_SNP [dm3] X_3112794_SNP [dm6]	A	T	3.724e^-4	0.809	INTRON kirre
X	22134265	X_22134265_SNP [dm3] X_22732429_SNP [dm6]	A	T	3.728e^-4	0.809	INTRON CR44997	TF binding site mE1_TFBS_HSA
3L	2018501	3L_2018501_SNP [dm3] 3L_2018501_SNP [dm6]	C	T	3.730e^-4	0.809	INTERGENIC
2R	16815332	2R_16815332_SNP [dm3] 2R_20927827_SNP [dm6]	T	C	3.734e^-4	0.809	INTRON Rx
2L	16203107	2L_16203107_SNP [dm3] 2L_16203107_SNP [dm6]	A	T	3.741e^-4	0.809	UPSTREAM CR44736 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	2447873	X_2447873_SNP [dm3] X_2553840_SNP [dm6]	G	C	3.746e^-4	0.809	UPSTREAM Pdfr INTRON Pdfr	TF binding site mE1_TFBS_chinmo
X	6095033	X_6095033_SNP [dm3] X_6201000_SNP [dm6]	G	A	3.750e^-4	0.809	SYNONYMOUS_CODING vanin-like
2R	2070915	2R_2070915_SNP [dm3] 2R_6183410_SNP [dm6]	A	G	3.757e^-4	0.809	SYNONYMOUS_CODING Ptr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	25190679	3R_25190679_SNP [dm3] 3R_29364957_SNP [dm6]	A	C	3.759e^-4	0.809	INTERGENIC
3L	10723285	3L_10723285_SNP [dm3] 3L_10730185_SNP [dm6]	A	T	3.759e^-4	0.809	INTERGENIC
2L	3102707	2L_3102707_SNP [dm3] 2L_3102707_SNP [dm6]	A	T	3.763e^-4	0.809	INTRON toc
3L	18841724	3L_18841724_SNP [dm3] 3L_18848624_SNP [dm6]	A	G	3.765e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	11518613	3R_11518613_SNP [dm3] 3R_15692891_SNP [dm6]	G	T	3.771e^-4	0.809	UPSTREAM CG31446 INTERGENIC
2R	11792442	2R_11792442_SNP [dm3] 2R_15904937_SNP [dm6]	A	T	3.783e^-4	0.811	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
X	940904	X_940904_SNP [dm3] X_1046871_SNP [dm6]	C	T	3.791e^-4	0.812	UTR_3_PRIME CG42259 UPSTREAM CR44779 DOWNSTREAM su_w[a]_	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19436590	2L_19436590_SNP [dm3] 2L_19436590_SNP [dm6]	C	T	3.798e^-4	0.812	SYNONYMOUS_CODING CG10237 DOWNSTREAM Rab9	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19892544	2L_19892544_SNP [dm3] 2L_19892544_SNP [dm6]	A	T	3.805e^-4	0.812	UTR_5_PRIME CG10481 INTRON sick	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4396927	2L_4396927_SNP [dm3] 2L_4396927_SNP [dm6]	A	C	3.805e^-4	0.812	INTRON l_2_k05819
X	22126595	X_22126595_SNP [dm3] X_22724759_SNP [dm6]	A	G	3.815e^-4	0.812	INTRON CR44997
3L	17196527	3L_17196527_SNP [dm3] 3L_17203427_SNP [dm6]	A	C	3.815e^-4	0.812	INTRON Rbp6
3R	25260107	3R_25260107_SNP [dm3] 3R_29434385_SNP [dm6]	C	T	3.844e^-4	0.815	INTRON Ptp99A
2L	5052397	2L_5052397_SNP [dm3] 2L_5052397_SNP [dm6]	A	C	3.846e^-4	0.815	UPSTREAM CG14040 INTRON eIF-3p40	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	21186585	2L_21186585_SNP [dm3] 2L_21186585_SNP [dm6]	G	T	3.849e^-4	0.815	INTRON Ret
3L	6064958	3L_6064958_SNP [dm3] 3L_6071858_SNP [dm6]	T	A	3.851e^-4	0.815	UPSTREAM CG6602 DOWNSTREAM CG42269 INTERGENIC
3R	9759477	3R_9759477_SNP [dm3] 3R_13933755_SNP [dm6]	C	T	3.852e^-4	0.815	INTERGENIC
X	15260345	X_15260345_SNP [dm3] X_15366312_SNP [dm6]	A	G	3.859e^-4	0.816	INTRON acj6
3L	15056079	3L_15056079_SNP [dm3] 3L_15062979_SNP [dm6]	G	A	3.862e^-4	0.816	UPSTREAM CR43684 INTRON Sytbeta
3L	3921382	3L_3921382_SNP [dm3] 3L_3921382_SNP [dm6]	G	A	3.870e^-4	0.816	INTRON Eip63F-1
2R	18155143	2R_18155143_SNP [dm3] 2R_22267638_SNP [dm6]	C	A	3.874e^-4	0.816	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17163739	3R_17163739_SNP [dm3] 3R_21338017_SNP [dm6]	A	T	3.881e^-4	0.817	INTRON CG16791	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	19345712	3L_19345712_SNP [dm3] 3L_19352612_SNP [dm6]	T	G	3.897e^-4	0.819	INTRON CG32206
X	6683474	X_6683474_SNP [dm3] X_6789441_SNP [dm6]	G	A	3.912e^-4	0.82	INTRON C3G
X	14037023	X_14037023_DEL [dm3] X_14142990_DEL [dm6]	CC	C	3.913e^-4	0.82	DOWNSTREAM CR44658 INTERGENIC
2L	13426677	2L_13426677_SNP [dm3] 2L_13426677_SNP [dm6]	A	G	3.919e^-4	0.82	INTRON CG42784
2R	1920408	2R_1920408_SNP [dm3] 2R_6032903_SNP [dm6]	T	A	3.928e^-4	0.82	INTRON SCAP	TF binding site BDTNP1_TFBS_dl
2L	4056278	2L_4056278_SNP [dm3] 2L_4056278_SNP [dm6]	G	T	3.934e^-4	0.82	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
X	1421164	X_1421164_SNP [dm3] X_1527131_SNP [dm6]	T	C	3.935e^-4	0.82	INTRON Mur2B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10723286	3L_10723286_SNP [dm3] 3L_10730186_SNP [dm6]	A	G	3.946e^-4	0.82	INTERGENIC
3R	24833823	3R_24833823_SNP [dm3] 3R_29008101_SNP [dm6]	G	T	3.948e^-4	0.82	DOWNSTREAM mir-4947 INTRON wat
3L	5898532	3L_5898532_SNP [dm3] 3L_5905432_SNP [dm6]	G	A	3.950e^-4	0.82	INTRON CG10486
2R	9343520	2R_9343520_SNP [dm3] 2R_13456015_SNP [dm6]	C	T	3.959e^-4	0.82	SYNONYMOUS_CODING arr
2R	15338066	2R_15338066_SNP [dm3] 2R_19450561_SNP [dm6]	A	G	3.967e^-4	0.82	UPSTREAM betaTub56D INTRON betaTub56D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2715726	2L_2715726_SNP [dm3] 2L_2715726_SNP [dm6]	G	A	3.973e^-4	0.82	INTRON CG31690
3R	24515755	3R_24515755_DEL [dm3] 3R_28690033_DEL [dm6]	ATTGTG	A	3.979e^-4	0.82	INTRON CG9990	TF binding site mE1_TFBS_inv
2R	11850274	2R_11850274_SNP [dm3] 2R_15962769_SNP [dm6]	T	G	3.988e^-4	0.82	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	13233876	2R_13233876_SNP [dm3] 2R_17346371_SNP [dm6]	G	T	3.996e^-4	0.82	INTRON mbl
2R	7063681	2R_7063681_INS [dm3] 2R_11176176_INS [dm6]	C	CCAGCTCTTGATGCCTTCC...	4.000e^-4	0.82	INTRON shn
3R	26484134	3R_26484134_SNP [dm3] 3R_30658412_SNP [dm6]	G	A	4.002e^-4	0.82	INTERGENIC
3L	12633969	3L_12633969_SNP [dm3] 3L_12640869_SNP [dm6]	A	T	4.003e^-4	0.82	INTRON CR32111
3L	12589779	3L_12589779_SNP [dm3] 3L_12596679_SNP [dm6]	T	A	4.010e^-4	0.82	DOWNSTREAM ara INTERGENIC
3R	26316889	3R_26316889_SNP [dm3] 3R_30491167_SNP [dm6]	C	A	4.010e^-4	0.82	SYNONYMOUS_CODING PH4alphaSG2 DOWNSTREAM PH4alphaMP	TF binding site mE1_TFBS_cad
2R	4173715	2R_4173715_SNP [dm3] 2R_8286210_SNP [dm6]	T	C	4.012e^-4	0.82	INTERGENIC
3L	15046283	3L_15046283_SNP [dm3] 3L_15053183_SNP [dm6]	G	A	4.020e^-4	0.82	NON_SYNONYMOUS_CODING CG43680 UPSTREAM CG13461 DOWNSTREAM CG18649 INTRON Sytbeta
2L	746774	2L_746774_SNP [dm3] 2L_746774_SNP [dm6]	G	A	4.023e^-4	0.82	INTERGENIC
2L	13055708	2L_13055708_SNP [dm3] 2L_13055708_SNP [dm6]	C	T	4.029e^-4	0.82	INTRON CG9932
2R	10981985	2R_10981985_SNP [dm3] 2R_15094480_SNP [dm6]	T	G	4.041e^-4	0.82	INTERGENIC
3R	22093974	3R_22093974_SNP [dm3] 3R_26268252_SNP [dm6]	T	G	4.055e^-4	0.82	UPSTREAM CG6154 INTRON CG6154
3R	12429381	3R_12429381_SNP [dm3] 3R_16603659_SNP [dm6]	G	C	4.061e^-4	0.82	INTRON CG10345
2R	3789180	2R_3789180_SNP [dm3] 2R_7901675_SNP [dm6]	T	A	4.067e^-4	0.82	INTRON CG30377	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8340890	2R_8340890_INS [dm3] 2R_12453385_INS [dm6]	T	TT	4.075e^-4	0.82	UTR_5_PRIME Lac DOWNSTREAM Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	3323230	3R_3323230_SNP [dm3] 3R_7497508_SNP [dm6]	A	C	4.076e^-4	0.82	INTRON alpha-Est9
X	20329347	X_20329347_SNP [dm3] X_20458320_SNP [dm6]	G	T	4.084e^-4	0.82	INTRON CG32506	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1554475	2L_1554475_SNP [dm3] 2L_1554475_SNP [dm6]	T	G	4.086e^-4	0.82	UPSTREAM haf INTERGENIC
3L	15055879	3L_15055879_SNP [dm3] 3L_15062779_SNP [dm6]	A	G	4.102e^-4	0.82	UPSTREAM CR43684 INTRON Sytbeta
3L	7540358	3L_7540358_SNP [dm3] 3L_7547258_SNP [dm6]	A	C	4.104e^-4	0.82	INTERGENIC
2L	20147223	2L_20147223_SNP [dm3] 2L_20147223_SNP [dm6]	T	A	4.115e^-4	0.82	INTERGENIC
2R	6403465	2R_6403465_SNP [dm3] 2R_10515960_SNP [dm6]	G	A	4.117e^-4	0.82	SYNONYMOUS_CODING lola INTRON lola
3L	8744514	3L_8744514_SNP [dm3] 3L_8751414_SNP [dm6]	A	T	4.121e^-4	0.82	EXON CR44527	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10218485	2L_10218485_SNP [dm3] 2L_10218485_SNP [dm6]	T	C	4.121e^-4	0.82	INTRON Npc1a	TF binding site mE1_TFBS_HSA
2R	10473490	2R_10473490_SNP [dm3] 2R_14585985_SNP [dm6]	C	T	4.135e^-4	0.82	UTR_3_PRIME ttv DOWNSTREAM ttv
3L	13343326	3L_13343326_SNP [dm3] 3L_13350226_SNP [dm6]	A	G	4.135e^-4	0.82	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6700388	2L_6700388_SNP [dm3] 2L_6700388_SNP [dm6]	C	T	4.136e^-4	0.82	SYNONYMOUS_CODING Tsp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	17196494	3L_17196494_SNP [dm3] 3L_17203394_SNP [dm6]	T	C	4.136e^-4	0.82	INTRON Rbp6
3L	17196528	3L_17196528_SNP [dm3] 3L_17203428_SNP [dm6]	C	T	4.136e^-4	0.82	INTRON Rbp6
3R	15061933	3R_15061933_SNP [dm3] 3R_19236211_SNP [dm6]	T	C	4.136e^-4	0.82	INTRON unc79
2R	15454584	2R_15454584_SNP [dm3] 2R_19567079_SNP [dm6]	T	A	4.142e^-4	0.82	NON_SYNONYMOUS_CODING sm UPSTREAM sm INTRON sm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8186873	2R_8186873_SNP [dm3] 2R_12299368_SNP [dm6]	C	A	4.143e^-4	0.82	NON_SYNONYMOUS_CODING CG8850 UTR_3_PRIME CG42700 DOWNSTREAM CG42700
3L	6063965	3L_6063965_SNP [dm3] 3L_6070865_SNP [dm6]	T	C	4.145e^-4	0.82	SYNONYMOUS_CODING CG42269	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14524379	3R_14524379_SNP [dm3] 3R_18698657_SNP [dm6]	C	T	4.163e^-4	0.82	INTERGENIC
2L	18742041	2L_18742041_INS [dm3] 2L_18742041_INS [dm6]	C	CCCAGAATCTGTAAGTTGC...	4.167e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_inv
3L	16198901	3L_16198901_SNP [dm3] 3L_16205801_SNP [dm6]	G	A	4.169e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18486373	2R_18486373_SNP [dm3] 2R_22598868_SNP [dm6]	G	A	4.170e^-4	0.82	UPSTREAM CG4269 INTRON CG4269
2L	3816093	2L_3816093_SNP [dm3] 2L_3816093_SNP [dm6]	A	C	4.170e^-4	0.82	DOWNSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs
2L	15887301	2L_15887301_SNP [dm3] 2L_15887301_SNP [dm6]	A	T	4.170e^-4	0.82	UPSTREAM CR31824 INTERGENIC
3R	27208710	3R_27208710_SNP [dm3] 3R_31382988_SNP [dm6]	A	C	4.179e^-4	0.82	INTRON CG1607
X	2515988	X_2515988_SNP [dm3] X_2621955_SNP [dm6]	G	A	4.183e^-4	0.82	UTR_3_PRIME Seipin DOWNSTREAM brv3
3L	12179951	3L_12179951_SNP [dm3] 3L_12186851_SNP [dm6]	A	G	4.187e^-4	0.82	SYNONYMOUS_CODING CG6910	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5086105	2R_5086105_SNP [dm3] 2R_9198600_SNP [dm6]	G	A	4.189e^-4	0.82	INTRON unpg
2R	5086116	2R_5086116_DEL [dm3] 2R_9198611_DEL [dm6]	CTGTTTATTTAAACAATAGG...	C	4.189e^-4	0.82	INTRON unpg
2R	5086208	2R_5086208_DEL [dm3] 2R_9198703_DEL [dm6]	GATTTGATC	G	4.189e^-4	0.82	INTRON unpg
3L	8745824	3L_8745824_SNP [dm3] 3L_8752724_SNP [dm6]	T	A	4.195e^-4	0.82	UPSTREAM Fhos INTERGENIC
X	17240024	X_17240024_SNP [dm3] X_17345991_SNP [dm6]	G	A	4.197e^-4	0.82	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26295261	3R_26295261_SNP [dm3] 3R_30469539_SNP [dm6]	A	G	4.201e^-4	0.82	INTRON PH4alphaEFB
X	19585917	X_19585917_SNP [dm3] X_19691884_SNP [dm6]	T	C	4.224e^-4	0.82	SYNONYMOUS_CODING Mer	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19585982	X_19585982_SNP [dm3] X_19691949_SNP [dm6]	A	G	4.224e^-4	0.82	INTRON Mer	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11260950	3R_11260950_SNP [dm3] 3R_15435228_SNP [dm6]	C	A	4.224e^-4	0.82	UPSTREAM CG6118 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	16496849	2L_16496849_SNP [dm3] 2L_16496849_SNP [dm6]	A	G	4.229e^-4	0.82	UTR_5_PRIME Tpr2 INTRON Tpr2
2R	11467237	2R_11467237_SNP [dm3] 2R_15579732_SNP [dm6]	G	T	4.233e^-4	0.82	INTERGENIC
3R	22020271	3R_22020271_SNP [dm3] 3R_26194549_SNP [dm6]	G	A	4.244e^-4	0.82	UPSTREAM CR44320 INTERGENIC
2R	15930459	2R_15930459_SNP [dm3] 2R_20042954_SNP [dm6]	G	T	4.252e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	16441029	X_16441029_SNP [dm3] X_16546996_SNP [dm6]	T	G	4.261e^-4	0.82	NON_SYNONYMOUS_CODING CG9902	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
X	19888768	X_19888768_SNP [dm3] X_19994735_SNP [dm6]	T	A	4.267e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3485117	2L_3485117_SNP [dm3] 2L_3485117_SNP [dm6]	C	T	4.270e^-4	0.82	INTRON CG15414
3R	9911130	3R_9911130_SNP [dm3] 3R_14085408_SNP [dm6]	C	T	4.272e^-4	0.82	INTRON foxo
2R	5508330	2R_5508330_SNP [dm3] 2R_9620825_SNP [dm6]	T	C	4.272e^-4	0.82	UPSTREAM mir-307b DOWNSTREAM mir-307a INTRON Mmp2
2L	2647079	2L_2647079_SNP [dm3] 2L_2647079_SNP [dm6]	G	A	4.283e^-4	0.82	SYNONYMOUS_CODING CG9962 UPSTREAM CG43851 DOWNSTREAM CR43852	TF binding site mE1_TFBS_chinmo
2R	16607960	2R_16607960_SNP [dm3] 2R_20720455_SNP [dm6]	A	C	4.294e^-4	0.82	INTRON dpr
2L	20245733	2L_20245733_SNP [dm3] 2L_20245733_SNP [dm6]	T	C	4.298e^-4	0.82	INTERGENIC
3R	8159965	3R_8159965_SNP [dm3] 3R_12334243_SNP [dm6]	G	C	4.308e^-4	0.82	INTERGENIC
2L	5120547	2L_5120547_SNP [dm3] 2L_5120547_SNP [dm6]	G	A	4.312e^-4	0.82	INTRON Msp300
2L	17748375	2L_17748375_SNP [dm3] 2L_17748375_SNP [dm6]	A	C	4.323e^-4	0.82	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	20120200	2L_20120200_SNP [dm3] 2L_20120200_SNP [dm6]	C	A	4.324e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	21738344	3L_21738344_SNP [dm3] 3L_21745244_SNP [dm6]	C	T	4.327e^-4	0.82	UPSTREAM CG14565 DOWNSTREAM Syn1 INTERGENIC
2R	11873805	2R_11873805_SNP [dm3] 2R_15986300_SNP [dm6]	C	A	4.331e^-4	0.82	INTRON Strn-Mlck
2R	11603882	2R_11603882_SNP [dm3] 2R_15716377_SNP [dm6]	T	G	4.333e^-4	0.82	INTERGENIC
3R	11443057	3R_11443057_SNP [dm3] 3R_15617335_SNP [dm6]	A	G	4.334e^-4	0.82	INTERGENIC
2L	20102778	2L_20102778_SNP [dm3] 2L_20102778_SNP [dm6]	T	G	4.346e^-4	0.82	UTR_3_PRIME Kua DOWNSTREAM CG13970
X	22128290	X_22128290_SNP [dm3] X_22726454_SNP [dm6]	T	A	4.348e^-4	0.82	INTRON CR44997	transposable element FlyBase
2L	12908531	2L_12908531_SNP [dm3] 2L_12908531_SNP [dm6]	A	C	4.355e^-4	0.82	INTERGENIC
2L	746305	2L_746305_SNP [dm3] 2L_746305_SNP [dm6]	C	T	4.356e^-4	0.82	INTERGENIC
3L	1661191	3L_1661191_DEL [dm3] 3L_1661191_DEL [dm6]	CC	C	4.362e^-4	0.82	INTRON CG7971
3L	8879966	3L_8879966_SNP [dm3] 3L_8886866_SNP [dm6]	A	G	4.367e^-4	0.82	SYNONYMOUS_CODING dally
2L	13177423	2L_13177423_SNP [dm3] 2L_13177423_SNP [dm6]	G	A	4.367e^-4	0.82	NON_SYNONYMOUS_CODING CG5439 UPSTREAM Sfmbt DOWNSTREAM CG43925	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	11544263	2R_11544263_SNP [dm3] 2R_15656758_SNP [dm6]	C	A	4.371e^-4	0.82	UPSTREAM mir-278 DOWNSTREAM fus INTRON CG42524	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	168306	2L_168306_SNP [dm3] 2L_168306_SNP [dm6]	C	T	4.371e^-4	0.82	INTRON spen
3L	505856	3L_505856_SNP [dm3] 3L_505856_SNP [dm6]	T	C	4.372e^-4	0.82	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	10774505	2L_10774505_SNP [dm3] 2L_10774505_SNP [dm6]	T	C	4.377e^-4	0.82	SYNONYMOUS_CODING CG31869	TF binding site mE1_TFBS_inv
3R	5139584	3R_5139584_SNP [dm3] 3R_9313862_SNP [dm6]	G	A	4.380e^-4	0.82	INTRON CG8861
2L	3790983	2L_3790983_SNP [dm3] 2L_3790983_SNP [dm6]	C	T	4.382e^-4	0.82	SYNONYMOUS_CODING CG3921
X	15684210	X_15684210_INS [dm3] X_15790177_INS [dm6]	G	GCGG	4.389e^-4	0.82	INTRON Rhp
3R	12933004	3R_12933004_SNP [dm3] 3R_17107282_SNP [dm6]	C	A	4.396e^-4	0.82	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7800164	3R_7800164_SNP [dm3] 3R_11974442_SNP [dm6]	T	C	4.404e^-4	0.82	SYNONYMOUS_CODING Tango9 DOWNSTREAM CG10005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	16203538	2L_16203538_SNP [dm3] 2L_16203538_SNP [dm6]	C	T	4.407e^-4	0.82	DOWNSTREAM CR44736 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	2752655	X_2752655_SNP [dm3] X_2858622_SNP [dm6]	A	T	4.410e^-4	0.82	INTRON kirre
2L	1550144	2L_1550144_SNP [dm3] 2L_1550144_SNP [dm6]	A	T	4.420e^-4	0.82	INTERGENIC
X	2372576	X_2372576_SNP [dm3] X_2478543_SNP [dm6]	A	C	4.420e^-4	0.82	UTR_3_PRIME trol INTRON trol
3R	2642368	3R_2642368_SNP [dm3] 3R_6816646_SNP [dm6]	G	A	4.421e^-4	0.82	UPSTREAM CR42651 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	15120526	3R_15120526_SNP [dm3] 3R_19294804_SNP [dm6]	T	A	4.428e^-4	0.82	INTERGENIC
2L	7931360	2L_7931360_SNP [dm3] 2L_7931360_SNP [dm6]	G	C	4.431e^-4	0.82	INTRON Snoo

By genomic position
Variant impact
Gene name

mn_RespBenzaldeh_3_5 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results