DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.668e^-11)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.09342

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

7199 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	1216141	3L_1216141_SNP [dm3] 3L_1216141_SNP [dm6]	C	T	2.968e^-11	2.487e^-5	INTRON mwh	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2L	7358791	2L_7358791_SNP [dm3] 2L_7358791_SNP [dm6]	A	C	3.201e^-11	2.487e^-5	INTERGENIC
2L	7358790	2L_7358790_SNP [dm3] 2L_7358790_SNP [dm6]	A	T	4.771e^-11	2.487e^-5	INTERGENIC
2R	1603531	2R_1603531_SNP [dm3] 2R_5716026_SNP [dm6]	A	G	5.622e^-11	2.487e^-5	INTRON ap	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15893993	2R_15893993_SNP [dm3] 2R_20006488_SNP [dm6]	G	T	6.683e^-11	2.487e^-5	UPSTREAM CR44628 INTERGENIC
2R	15886544	2R_15886544_SNP [dm3] 2R_19999039_SNP [dm6]	G	A	1.209e^-10	3.748e^-5	INTERGENIC
2R	6927412	2R_6927412_SNP [dm3] 2R_11039907_SNP [dm6]	T	C	1.721e^-10	4.058e^-5	INTRON luna	TF binding site mE1_TFBS_chinmo
2L	7358831	2L_7358831_SNP [dm3] 2L_7358831_SNP [dm6]	G	T	1.849e^-10	4.058e^-5	INTERGENIC
2R	1610618	2R_1610618_DEL [dm3] 2R_5723113_DEL [dm6]	ACAACTTGACGATC...	A	1.963e^-10	4.058e^-5	INTRON ap	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	18561260	3L_18561260_SNP [dm3] 3L_18568160_SNP [dm6]	T	C	2.947e^-10	5.482e^-5	INTRON AstC-R1
2L	6356630	2L_6356630_SNP [dm3] 2L_6356630_SNP [dm6]	C	T	7.536e^-10	1.263e^-4	DOWNSTREAM CG9500 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2L	14153560	2L_14153560_SNP [dm3] 2L_14153560_SNP [dm6]	A	T	1.010e^-9	1.263e^-4	INTRON CG17341
2L	7851869	2L_7851869_SNP [dm3] 2L_7851869_SNP [dm6]	A	T	1.366e^-9	1.263e^-4	INTRON CG14535
3L	1204756	3L_1204756_SNP [dm3] 3L_1204756_SNP [dm6]	C	A	1.474e^-9	1.263e^-4	UTR_5_PRIME CG9119 INTRON mwh	TF binding site mE1_TFBS_cad
3L	7097178	3L_7097178_SNP [dm3] 3L_7104078_SNP [dm6]	C	T	1.609e^-9	1.263e^-4	INTRON form3
3L	15265363	3L_15265363_SNP [dm3] 3L_15272263_SNP [dm6]	C	G	1.796e^-9	1.263e^-4	INTERGENIC
3L	15265373	3L_15265373_SNP [dm3] 3L_15272273_SNP [dm6]	T	C	1.796e^-9	1.263e^-4	INTERGENIC
3L	15265374	3L_15265374_SNP [dm3] 3L_15272274_SNP [dm6]	A	T	1.796e^-9	1.263e^-4	INTERGENIC
3L	15265376	3L_15265376_SNP [dm3] 3L_15272276_SNP [dm6]	A	C	1.796e^-9	1.263e^-4	INTERGENIC
3L	15265382	3L_15265382_SNP [dm3] 3L_15272282_SNP [dm6]	A	T	1.796e^-9	1.263e^-4	INTERGENIC
2R	1601950	2R_1601950_SNP [dm3] 2R_5714445_SNP [dm6]	C	T	1.901e^-9	1.263e^-4	INTRON ap
2R	1605964	2R_1605964_SNP [dm3] 2R_5718459_SNP [dm6]	G	A	1.901e^-9	1.263e^-4	INTRON ap
2R	1610634	2R_1610634_SNP [dm3] 2R_5723129_SNP [dm6]	A	T	1.901e^-9	1.263e^-4	INTRON ap	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	1610638	2R_1610638_SNP [dm3] 2R_5723133_SNP [dm6]	A	T	1.901e^-9	1.263e^-4	INTRON ap	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	1610646	2R_1610646_SNP [dm3] 2R_5723141_SNP [dm6]	A	T	1.901e^-9	1.263e^-4	INTRON ap	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	1610648	2R_1610648_SNP [dm3] 2R_5723143_SNP [dm6]	G	C	1.901e^-9	1.263e^-4	INTRON ap	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	1621814	2R_1621814_SNP [dm3] 2R_5734309_SNP [dm6]	T	C	1.901e^-9	1.263e^-4	INTERGENIC	regulatory region REDfly_CRMs
2R	5586543	2R_5586543_SNP [dm3] 2R_9699038_SNP [dm6]	G	A	1.901e^-9	1.263e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	15265380	3L_15265380_SNP [dm3] 3L_15272280_SNP [dm6]	C	A	2.021e^-9	1.284e^-4	INTERGENIC
X	4662483	X_4662483_SNP [dm3] X_4768450_SNP [dm6]	G	A	2.070e^-9	1.284e^-4	DOWNSTREAM CG15472 INTERGENIC
2L	12812522	2L_12812522_SNP [dm3] 2L_12812522_SNP [dm6]	C	T	2.488e^-9	1.303e^-4	INTERGENIC
2R	1610635	2R_1610635_SNP [dm3] 2R_5723130_SNP [dm6]	A	G	2.541e^-9	1.303e^-4	INTRON ap	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	1607161	2R_1607161_SNP [dm3] 2R_5719656_SNP [dm6]	G	A	2.585e^-9	1.303e^-4	INTRON ap
2R	1599351	2R_1599351_SNP [dm3] 2R_5711846_SNP [dm6]	C	A	2.621e^-9	1.303e^-4	INTRON ap	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15265358	3L_15265358_SNP [dm3] 3L_15272258_SNP [dm6]	G	A	2.645e^-9	1.303e^-4	INTERGENIC
2R	1611790	2R_1611790_SNP [dm3] 2R_5724285_SNP [dm6]	A	T	2.651e^-9	1.303e^-4	INTRON ap	transposable element FlyBase
2R	1622111	2R_1622111_SNP [dm3] 2R_5734606_SNP [dm6]	C	A	2.651e^-9	1.303e^-4	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2R	1601746	2R_1601746_SNP [dm3] 2R_5714241_SNP [dm6]	T	A	2.660e^-9	1.303e^-4	INTRON ap	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1619156	2R_1619156_SNP [dm3] 2R_5731651_SNP [dm6]	C	T	2.947e^-9	1.362e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1619258	2R_1619258_SNP [dm3] 2R_5731753_SNP [dm6]	C	T	2.947e^-9	1.362e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	7851870	2L_7851870_SNP [dm3] 2L_7851870_SNP [dm6]	T	A	3.024e^-9	1.362e^-4	INTRON CG14535
2L	11877308	2L_11877308_SNP [dm3] 2L_11877308_SNP [dm6]	G	T	3.075e^-9	1.362e^-4	UPSTREAM Pde1c INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16792194	2L_16792194_SNP [dm3] 2L_16792194_SNP [dm6]	A	G	3.185e^-9	1.378e^-4	NON_SYNONYMOUS_CODING CG17928
2L	18566732	2L_18566732_SNP [dm3] 2L_18566732_SNP [dm6]	A	G	3.335e^-9	1.410e^-4	INTRON Pde11
2R	1613085	2R_1613085_SNP [dm3] 2R_5725580_SNP [dm6]	T	G	3.447e^-9	1.423e^-4	INTRON ap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
2R	1617381	2R_1617381_SNP [dm3] 2R_5729876_SNP [dm6]	G	A	3.518e^-9	1.423e^-4	INTERGENIC	transposable element FlyBase
2L	16792157	2L_16792157_SNP [dm3] 2L_16792157_SNP [dm6]	G	A	4.395e^-9	1.740e^-4	NON_SYNONYMOUS_CODING CG17928
2L	20001012	2L_20001012_SNP [dm3] 2L_20001012_SNP [dm6]	T	C	4.948e^-9	1.918e^-4	UPSTREAM CR44908 INTRON CG43861
2L	12481326	2L_12481326_SNP [dm3] 2L_12481326_SNP [dm6]	T	C	6.286e^-9	2.387e^-4	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	1618552	2R_1618552_SNP [dm3] 2R_5731047_SNP [dm6]	G	T	6.860e^-9	2.552e^-4	INTERGENIC
3L	9402701	3L_9402701_SNP [dm3] 3L_9409601_SNP [dm6]	G	A	7.478e^-9	2.728e^-4	SYNONYMOUS_CODING CG4022	TF binding site BDTNP1_TFBS_dl
X	2290361	X_2290361_SNP [dm3] X_2396328_SNP [dm6]	C	T	7.729e^-9	2.765e^-4	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	1631289	2R_1631289_INS [dm3] 2R_5743784_INS [dm6]	T	TTTTTAAGTAAGTT...	1.049e^-8	3.682e^-4	INTERGENIC	regulatory region REDfly_CRMs
X	4441679	X_4441679_SNP [dm3] X_4547646_SNP [dm6]	C	T	1.152e^-8	3.968e^-4	SYNONYMOUS_CODING Usf INTRON CR32773
2L	9347766	2L_9347766_SNP [dm3] 2L_9347766_SNP [dm6]	C	T	1.268e^-8	4.289e^-4	DOWNSTREAM CR44802 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	9130853	2L_9130853_DEL [dm3] 2L_9130853_DEL [dm6]	AAACA	A	1.448e^-8	4.812e^-4	INTRON CG32982
3L	5646654	3L_5646654_SNP [dm3] 3L_5653554_SNP [dm6]	C	T	1.632e^-8	5.325e^-4	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	5646660	3L_5646660_SNP [dm3] 3L_5653560_SNP [dm6]	A	G	2.252e^-8	7.222e^-4	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	1602753	2R_1602753_SNP [dm3] 2R_5715248_SNP [dm6]	T	C	2.290e^-8	7.222e^-4	INTRON ap	TF binding site mE1_TFBS_cad
2R	11809964	2R_11809964_SNP [dm3] 2R_15922459_SNP [dm6]	G	C	2.414e^-8	7.486e^-4	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
3L	20996530	3L_20996530_DEL [dm3] 3L_21003430_DEL [dm6]	TGTTAGATT	T	2.675e^-8	8.157e^-4	INTRON skd
2R	17421211	2R_17421211_SNP [dm3] 2R_21533706_SNP [dm6]	C	T	2.758e^-8	8.275e^-4	INTRON Egfr
2R	1617709	2R_1617709_SNP [dm3] 2R_5730204_SNP [dm6]	T	A	3.049e^-8	9.003e^-4	INTERGENIC	transposable element FlyBase
3L	5277029	3L_5277029_SNP [dm3] 3L_5283929_SNP [dm6]	G	C	3.148e^-8	9.151e^-4	INTERGENIC
3L	5646353	3L_5646353_SNP [dm3] 3L_5653253_SNP [dm6]	A	G	3.485e^-8	9.974e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sbb
2L	9347663	2L_9347663_INS [dm3] 2L_9347663_INS [dm6]	T	TATGGAATT	3.795e^-8	0.001	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
2R	7789298	2R_7789298_SNP [dm3] 2R_11901793_SNP [dm6]	C	G	3.808e^-8	0.001	DOWNSTREAM Zip48C INTRON MCPH1	TF binding site mE1_TFBS_sens
3R	13072274	3R_13072274_SNP [dm3] 3R_17246552_SNP [dm6]	G	C	4.157e^-8	0.001	INTRON beat-IIb
2R	1609104	2R_1609104_SNP [dm3] 2R_5721599_SNP [dm6]	G	T	4.392e^-8	0.001	INTRON ap
X	17124610	X_17124610_DEL [dm3] X_17230577_DEL [dm6]	AGCTCCA	A	4.461e^-8	0.001	CODON_DELETION CG10597	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7619262	2L_7619262_SNP [dm3] 2L_7619262_SNP [dm6]	G	T	4.527e^-8	0.001	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
3R	15694236	3R_15694236_SNP [dm3] 3R_19868514_SNP [dm6]	A	G	4.631e^-8	0.001	SYNONYMOUS_CODING CG4562 UTR_3_PRIME CG4562	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	20376633	3R_20376633_SNP [dm3] 3R_24550911_SNP [dm6]	G	T	4.670e^-8	0.001	INTRON Esyt2
3L	11725208	3L_11725208_SNP [dm3] 3L_11732108_SNP [dm6]	A	G	4.805e^-8	0.001	UPSTREAM CG32087 DOWNSTREAM CG32088 INTERGENIC
2L	10602765	2L_10602765_DEL [dm3] 2L_10602765_DEL [dm6]	TGTGAGTTGAACTACG...	T	5.037e^-8	0.001	INTRON Trim9
2R	9944708	2R_9944708_SNP [dm3] 2R_14057203_SNP [dm6]	C	T	5.056e^-8	0.001	SPLICE_SITE_REGION mam INTRON mam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11725207	3L_11725207_SNP [dm3] 3L_11732107_SNP [dm6]	G	A	5.137e^-8	0.001	UPSTREAM CG32087 DOWNSTREAM CG32088 INTERGENIC
X	1758369	X_1758369_SNP [dm3] X_1864336_SNP [dm6]	G	A	5.160e^-8	0.001	SYNONYMOUS_CODING CG14814	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	1540226	2L_1540226_DEL [dm3] 2L_1540226_DEL [dm6]	TAT	T	5.259e^-8	0.001	INTERGENIC
2L	6346585	2L_6346585_SNP [dm3] 2L_6346585_SNP [dm6]	C	G	5.675e^-8	0.001	UTR_3_PRIME CG9497 DOWNSTREAM Cpr
X	2570839	X_2570839_SNP [dm3] X_2676806_SNP [dm6]	C	G	6.381e^-8	0.001	DOWNSTREAM sgg & 1 other INTRON sgg
2R	9882561	2R_9882561_SNP [dm3] 2R_13995056_SNP [dm6]	A	G	6.433e^-8	0.001	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	13763673	2R_13763673_INS [dm3] 2R_17876168_INS [dm6]	T	TC	7.389e^-8	0.002	INTRON Elk
3L	15265364	3L_15265364_SNP [dm3] 3L_15272264_SNP [dm6]	A	T	7.771e^-8	0.002	INTERGENIC
3L	15265365	3L_15265365_DEL [dm3] 3L_15272265_DEL [dm6]	AAAA	A	7.771e^-8	0.002	INTERGENIC
2R	8653575	2R_8653575_SNP [dm3] 2R_12766070_SNP [dm6]	G	C	7.911e^-8	0.002	INTERGENIC
2L	5789439	2L_5789439_SNP [dm3] 2L_5789439_SNP [dm6]	A	G	7.949e^-8	0.002	INTRON CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14245124	X_14245124_SNP [dm3] X_14351091_SNP [dm6]	T	C	8.071e^-8	0.002	INTRON dpr8
2R	7469415	2R_7469415_SNP [dm3] 2R_11581910_SNP [dm6]	G	T	8.331e^-8	0.002	NON_SYNONYMOUS_CODING tou UTR_5_PRIME tou INTRON tou	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	1317183	2R_1317183_SNP [dm3] 2R_5429678_SNP [dm6]	C	G	8.453e^-8	0.002	INTRON laccase2	transposable element FlyBase
2L	7855791	2L_7855791_SNP [dm3] 2L_7855791_SNP [dm6]	T	C	9.190e^-8	0.002	UPSTREAM CG14535 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7855792	2L_7855792_SNP [dm3] 2L_7855792_SNP [dm6]	A	T	9.190e^-8	0.002	UPSTREAM CG14535 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10602623	2L_10602623_SNP [dm3] 2L_10602623_SNP [dm6]	T	A	9.820e^-8	0.002	INTRON Trim9
2L	15359139	2L_15359139_SNP [dm3] 2L_15359139_SNP [dm6]	C	A	9.832e^-8	0.002	INTERGENIC
X	11179566	X_11179566_SNP [dm3] X_11285533_SNP [dm6]	G	A	9.921e^-8	0.002	INTRON CG44422
2R	1604088	2R_1604088_SNP [dm3] 2R_5716583_SNP [dm6]	C	A	1.001e^-7	0.002	INTRON ap	TF binding site mE1_TFBS_cad
2R	1605534	2R_1605534_SNP [dm3] 2R_5718029_SNP [dm6]	G	A	1.001e^-7	0.002	INTRON ap	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	5555719	2R_5555719_SNP [dm3] 2R_9668214_SNP [dm6]	C	T	1.001e^-7	0.002	INTRON Mmp2
2R	5555859	2R_5555859_SNP [dm3] 2R_9668354_SNP [dm6]	A	C	1.001e^-7	0.002	INTRON Mmp2
X	14245116	X_14245116_SNP [dm3] X_14351083_SNP [dm6]	A	G	1.061e^-7	0.002	INTRON dpr8
2L	14271729	2L_14271729_SNP [dm3] 2L_14271729_SNP [dm6]	C	T	1.072e^-7	0.002	INTRON wb
3L	1208996	3L_1208996_INS [dm3] 3L_1208996_INS [dm6]	G	CGAAC	1.226e^-7	0.002	UTR_5_PRIME mwh INTRON mwh	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_Trl
2L	15336516	2L_15336516_SNP [dm3] 2L_15336516_SNP [dm6]	G	A	1.230e^-7	0.002	DOWNSTREAM esg INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	26958610	3R_26958610_SNP [dm3] 3R_31132888_SNP [dm6]	A	G	1.255e^-7	0.002	EXON CR43458
2R	16796242	2R_16796242_SNP [dm3] 2R_20908737_SNP [dm6]	A	G	1.283e^-7	0.002	UPSTREAM CG9235 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20052975	3R_20052975_SNP [dm3] 3R_24227253_SNP [dm6]	G	A	1.326e^-7	0.002	NON_SYNONYMOUS_CODING CG13609 UPSTREAM Spps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	13312909	3R_13312909_SNP [dm3] 3R_17487187_SNP [dm6]	C	T	1.373e^-7	0.002	INTRON Dscam3
2L	2597450	2L_2597450_SNP [dm3] 2L_2597450_SNP [dm6]	C	T	1.381e^-7	0.002	INTERGENIC
2L	2597748	2L_2597748_SNP [dm3] 2L_2597748_SNP [dm6]	C	T	1.381e^-7	0.002	DOWNSTREAM CR44790 INTERGENIC
3L	15265386	3L_15265386_SNP [dm3] 3L_15272286_SNP [dm6]	T	C	1.389e^-7	0.002	INTERGENIC
2L	15421166	2L_15421166_SNP [dm3] 2L_15421166_SNP [dm6]	T	G	1.394e^-7	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10962397	2R_10962397_SNP [dm3] 2R_15074892_SNP [dm6]	C	A	1.578e^-7	0.003	INTERGENIC
3L	1210274	3L_1210274_SNP [dm3] 3L_1210274_SNP [dm6]	G	A	1.588e^-7	0.003	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
2L	11367948	2L_11367948_SNP [dm3] 2L_11367948_SNP [dm6]	G	A	1.679e^-7	0.003	SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9992642	3L_9992642_SNP [dm3] 3L_9999542_SNP [dm6]	C	T	1.712e^-7	0.003	INTRON dpr6
3L	15227883	3L_15227883_SNP [dm3] 3L_15234783_SNP [dm6]	T	A	1.717e^-7	0.003	UPSTREAM Tollo INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	18020574	X_18020574_SNP [dm3] X_18126541_SNP [dm6]	C	T	1.881e^-7	0.003	INTRON CG32553
X	2224192	X_2224192_SNP [dm3] X_2330159_SNP [dm6]	A	C	1.965e^-7	0.003	INTRON phl EXON CR33218
3R	14977955	3R_14977955_SNP [dm3] 3R_19152233_SNP [dm6]	A	G	1.992e^-7	0.003	INTRON CG5835
X	10972592	X_10972592_SNP [dm3] X_11078559_SNP [dm6]	T	C	2.051e^-7	0.003	UPSTREAM CR44358 INTRON sev
2L	8827039	2L_8827039_SNP [dm3] 2L_8827039_SNP [dm6]	T	C	2.130e^-7	0.003	SYNONYMOUS_CODING SoxN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13778609	2R_13778609_SNP [dm3] 2R_17891104_SNP [dm6]	A	C	2.212e^-7	0.003	INTRON Elk
3L	7106292	3L_7106292_DEL [dm3] 3L_7113192_DEL [dm6]	GTACTAAGATCTGTACGTTA...	C	2.219e^-7	0.003	INTRON form3
X	4736921	X_4736921_SNP [dm3] X_4842888_SNP [dm6]	G	T	2.225e^-7	0.003	INTRON CG42594
2R	1585410	2R_1585410_SNP [dm3] 2R_5697905_SNP [dm6]	G	A	2.320e^-7	0.003	UTR_5_PRIME CG17337 UPSTREAM CG17337	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	12722806	3L_12722806_SNP [dm3] 3L_12729706_SNP [dm6]	G	T	2.320e^-7	0.003	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6552625	2L_6552625_SNP [dm3] 2L_6552625_SNP [dm6]	G	T	2.418e^-7	0.003	DOWNSTREAM CR44776 INTERGENIC
X	5142481	X_5142481_SNP [dm3] X_5248448_SNP [dm6]	A	G	2.475e^-7	0.003	SYNONYMOUS_CODING rg UTR_3_PRIME CG15465	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4356435	X_4356435_SNP [dm3] X_4462402_SNP [dm6]	G	A	2.548e^-7	0.003	INTRON bi & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10602803	2L_10602803_SNP [dm3] 2L_10602803_SNP [dm6]	T	A	2.572e^-7	0.003	INTRON Trim9
3L	18133142	3L_18133142_SNP [dm3] 3L_18140042_SNP [dm6]	C	T	2.582e^-7	0.003	INTRON gk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	10972512	X_10972512_SNP [dm3] X_11078479_SNP [dm6]	G	A	2.610e^-7	0.003	SYNONYMOUS_CODING sev UPSTREAM CR44358
2L	6356523	2L_6356523_SNP [dm3] 2L_6356523_SNP [dm6]	G	C	2.613e^-7	0.003	DOWNSTREAM CG9500 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2L	6356528	2L_6356528_SNP [dm3] 2L_6356528_SNP [dm6]	C	A	2.613e^-7	0.003	DOWNSTREAM CG9500 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
X	10972530	X_10972530_SNP [dm3] X_11078497_SNP [dm6]	A	G	2.625e^-7	0.003	SYNONYMOUS_CODING sev UPSTREAM CR44358
3L	1219249	3L_1219249_SNP [dm3] 3L_1219249_SNP [dm6]	C	G	2.646e^-7	0.003	UPSTREAM LysP INTRON mwh
3L	1219472	3L_1219472_SNP [dm3] 3L_1219472_SNP [dm6]	C	T	2.646e^-7	0.003	UPSTREAM LysP INTRON mwh
3L	1227928	3L_1227928_SNP [dm3] 3L_1227928_SNP [dm6]	G	A	2.646e^-7	0.003	NON_SYNONYMOUS_CODING LysS INTRON mwh
3L	1229028	3L_1229028_SNP [dm3] 3L_1229028_SNP [dm6]	T	C	2.646e^-7	0.003	DOWNSTREAM LysS INTRON mwh
3L	15236669	3L_15236669_SNP [dm3] 3L_15243569_SNP [dm6]	A	G	2.690e^-7	0.003	DOWNSTREAM Tollo INTERGENIC
2R	14866719	2R_14866719_DEL [dm3] 2R_18979214_DEL [dm6]	GCGCCGAGGTCTTTGTCAAT...	G	2.742e^-7	0.003	UTR_3_PRIME CG18605	TF binding site mE1_TFBS_cad
3R	25657346	3R_25657346_SNP [dm3] 3R_29831624_SNP [dm6]	G	T	2.761e^-7	0.003	INTRON Atg16
2L	15421099	2L_15421099_SNP [dm3] 2L_15421099_SNP [dm6]	C	T	2.775e^-7	0.003	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15236668	3L_15236668_SNP [dm3] 3L_15243568_SNP [dm6]	G	A	2.796e^-7	0.003	DOWNSTREAM Tollo INTERGENIC
2R	12787588	2R_12787588_SNP [dm3] 2R_16900083_SNP [dm6]	T	C	2.832e^-7	0.003	INTRON inaC
2R	12787670	2R_12787670_SNP [dm3] 2R_16900165_SNP [dm6]	G	A	2.832e^-7	0.003	SYNONYMOUS_CODING inaC
2R	12788132	2R_12788132_SNP [dm3] 2R_16900627_SNP [dm6]	T	C	2.832e^-7	0.003	SYNONYMOUS_CODING inaC
2R	12788208	2R_12788208_SNP [dm3] 2R_16900703_SNP [dm6]	T	C	2.832e^-7	0.003	SYNONYMOUS_CODING inaC
2R	12788347	2R_12788347_SNP [dm3] 2R_16900842_SNP [dm6]	T	A	2.832e^-7	0.003	SYNONYMOUS_CODING inaC
X	4662345	X_4662345_DEL [dm3] X_4768312_DEL [dm6]	TAA	T	2.832e^-7	0.003	DOWNSTREAM CG15472 INTERGENIC
X	4662351	X_4662351_DEL [dm3] X_4768318_DEL [dm6]	TCG	T	2.832e^-7	0.003	DOWNSTREAM CG15472 INTERGENIC
X	4662359	X_4662359_SNP [dm3] X_4768326_SNP [dm6]	T	C	2.832e^-7	0.003	DOWNSTREAM CG15472 INTERGENIC
X	4662389	X_4662389_SNP [dm3] X_4768356_SNP [dm6]	G	A	2.832e^-7	0.003	DOWNSTREAM CG15472 INTERGENIC
2L	6416955	2L_6416955_SNP [dm3] 2L_6416955_SNP [dm6]	G	A	2.871e^-7	0.003	SYNONYMOUS_CODING Tig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1851792	2R_1851792_DEL [dm3] 2R_5964287_DEL [dm6]	AA	A	2.896e^-7	0.003	INTRON CG7881
2L	8373312	2L_8373312_SNP [dm3] 2L_8373312_SNP [dm6]	C	G	2.899e^-7	0.003	INTRON CG17292	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3L	15623324	3L_15623324_SNP [dm3] 3L_15630224_SNP [dm6]	C	T	2.919e^-7	0.003	INTRON comm3
2L	6562814	2L_6562814_SNP [dm3] 2L_6562814_SNP [dm6]	A	T	3.065e^-7	0.004	NON_SYNONYMOUS_CODING Ent2 UPSTREAM CG9596	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	10843677	2L_10843677_SNP [dm3] 2L_10843677_SNP [dm6]	G	A	3.128e^-7	0.004	SPLICE_SITE_REGION CG17139 & 1 other INTRON CG17139 & 1 other
X	14245187	X_14245187_DEL [dm3] X_14351154_DEL [dm6]	TT	T	3.197e^-7	0.004	INTRON dpr8
2L	11183992	2L_11183992_SNP [dm3] 2L_11183992_SNP [dm6]	G	A	3.262e^-7	0.004	INTRON Ca-beta
2L	12818312	2L_12818312_SNP [dm3] 2L_12818312_SNP [dm6]	G	A	3.267e^-7	0.004	UTR_3_PRIME kek1
X	4662321	X_4662321_SNP [dm3] X_4768288_SNP [dm6]	A	C	3.371e^-7	0.004	DOWNSTREAM CG15472 INTERGENIC
X	3257358	X_3257358_SNP [dm3] X_3363325_SNP [dm6]	C	A	3.457e^-7	0.004	INTERGENIC
2L	15367721	2L_15367721_SNP [dm3] 2L_15367721_SNP [dm6]	A	T	3.497e^-7	0.004	INTERGENIC
X	4662554	X_4662554_SNP [dm3] X_4768521_SNP [dm6]	T	C	3.497e^-7	0.004	DOWNSTREAM CG15472 INTERGENIC
2R	6053771	2R_6053771_SNP [dm3] 2R_10166266_SNP [dm6]	C	A	3.534e^-7	0.004	INTRON KCNQ
2R	7801851	2R_7801851_SNP [dm3] 2R_11914346_SNP [dm6]	G	T	3.534e^-7	0.004	INTERGENIC
2L	14300810	2L_14300810_SNP [dm3] 2L_14300810_SNP [dm6]	C	T	3.560e^-7	0.004	UPSTREAM wb INTRON wb	TF binding site mE1_TFBS_Trl
2L	17676413	2L_17676413_SNP [dm3] 2L_17676413_SNP [dm6]	T	G	3.590e^-7	0.004	INTRON CadN
2L	6416882	2L_6416882_SNP [dm3] 2L_6416882_SNP [dm6]	G	T	3.603e^-7	0.004	SYNONYMOUS_CODING Tig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1211188	3L_1211188_SNP [dm3] 3L_1211188_SNP [dm6]	G	T	3.621e^-7	0.004	UTR_5_PRIME LysD DOWNSTREAM LysC INTRON mwh
3R	13057688	3R_13057688_INS [dm3] 3R_17231966_INS [dm6]	A	AA	3.895e^-7	0.004	DOWNSTREAM beat-IIb INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
X	18281090	X_18281090_DEL [dm3] X_18387057_DEL [dm6]	AGGCACC	A	4.078e^-7	0.004	UPSTREAM Tsf1 INTERGENIC
3R	20376638	3R_20376638_SNP [dm3] 3R_24550916_SNP [dm6]	C	T	4.133e^-7	0.004	INTRON Esyt2
3R	16273824	3R_16273824_SNP [dm3] 3R_20448102_SNP [dm6]	C	T	4.187e^-7	0.004	INTRON Gfrl
2R	15763181	2R_15763181_SNP [dm3] 2R_19875676_SNP [dm6]	A	T	4.209e^-7	0.004	INTERGENIC
2L	6110701	2L_6110701_SNP [dm3] 2L_6110701_SNP [dm6]	G	A	4.249e^-7	0.004	INTRON stai
2R	9972487	2R_9972487_SNP [dm3] 2R_14084982_SNP [dm6]	A	T	4.527e^-7	0.005	INTRON Prosap	TF binding site mE1_TFBS_bab1
2R	9944340	2R_9944340_SNP [dm3] 2R_14056835_SNP [dm6]	C	T	4.550e^-7	0.005	SYNONYMOUS_CODING mam INTRON mam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9655444	3R_9655444_INS [dm3] 3R_13829722_INS [dm6]	G	GAT	4.561e^-7	0.005	INTERGENIC
3R	9655447	3R_9655447_DEL [dm3] 3R_13829725_DEL [dm6]	GCTCGT	G	4.561e^-7	0.005	INTERGENIC
2L	10751693	2L_10751693_SNP [dm3] 2L_10751693_SNP [dm6]	C	T	4.568e^-7	0.005	INTRON CG17124	TF binding site mE1_TFBS_cad
2L	10751694	2L_10751694_SNP [dm3] 2L_10751694_SNP [dm6]	C	T	4.568e^-7	0.005	INTRON CG17124	TF binding site mE1_TFBS_cad
2R	3611549	2R_3611549_SNP [dm3] 2R_7724044_SNP [dm6]	C	T	4.633e^-7	0.005	INTRON CG18812	TF binding site mE1_TFBS_inv
2L	8396559	2L_8396559_SNP [dm3] 2L_8396559_SNP [dm6]	T	C	4.650e^-7	0.005	UPSTREAM CG13385 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	8396576	2L_8396576_SNP [dm3] 2L_8396576_SNP [dm6]	G	A	4.650e^-7	0.005	UPSTREAM CG13385 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	8396629	2L_8396629_SNP [dm3] 2L_8396629_SNP [dm6]	T	C	4.650e^-7	0.005	UPSTREAM CG13385 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	7879872	2L_7879872_SNP [dm3] 2L_7879872_SNP [dm6]	C	T	4.718e^-7	0.005	UPSTREAM spz3 INTERGENIC
3L	18328558	3L_18328558_SNP [dm3] 3L_18335458_SNP [dm6]	C	T	4.740e^-7	0.005	INTERGENIC
3L	10711280	3L_10711280_SNP [dm3] 3L_10718180_SNP [dm6]	G	A	4.743e^-7	0.005	INTERGENIC
3L	9403091	3L_9403091_SNP [dm3] 3L_9409991_SNP [dm6]	C	T	4.766e^-7	0.005	UTR_5_PRIME CG4022	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	4964117	2L_4964117_SNP [dm3] 2L_4964117_SNP [dm6]	C	T	4.823e^-7	0.005	SYNONYMOUS_CODING CG34124 EXON CR43824	TF binding site mE1_TFBS_cad
X	6546325	X_6546325_SNP [dm3] X_6652292_SNP [dm6]	T	A	4.827e^-7	0.005	UTR_3_PRIME pigs DOWNSTREAM pigs & 1 other
2L	16520001	2L_16520001_SNP [dm3] 2L_16520001_SNP [dm6]	G	T	4.900e^-7	0.005	NON_SYNONYMOUS_CODING CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2R	18234200	2R_18234200_SNP [dm3] 2R_22346695_SNP [dm6]	C	A	4.951e^-7	0.005	UTR_5_PRIME Liprin-gamma INTRON Liprin-gamma
2L	15421168	2L_15421168_SNP [dm3] 2L_15421168_SNP [dm6]	C	T	5.524e^-7	0.005	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10751669	2L_10751669_SNP [dm3] 2L_10751669_SNP [dm6]	T	C	5.646e^-7	0.005	INTRON CG17124	TF binding site mE1_TFBS_cad
2L	10751697	2L_10751697_SNP [dm3] 2L_10751697_SNP [dm6]	C	T	5.646e^-7	0.005	INTRON CG17124	TF binding site mE1_TFBS_cad
3R	26342364	3R_26342364_DEL [dm3] 3R_30516642_DEL [dm6]	AAAA	A	5.685e^-7	0.005	DOWNSTREAM jdp INTRON CG9698
2L	16503084	2L_16503084_SNP [dm3] 2L_16503084_SNP [dm6]	G	A	5.709e^-7	0.005	INTRON Tpr2
2L	4681754	2L_4681754_SNP [dm3] 2L_4681754_SNP [dm6]	G	C	5.825e^-7	0.005	UPSTREAM CG11929 INTERGENIC
2L	4681831	2L_4681831_INS [dm3] 2L_4681831_INS [dm6]	AT	TCC	5.825e^-7	0.005	UPSTREAM CG11929 INTERGENIC
2L	17003689	2L_17003689_SNP [dm3] 2L_17003689_SNP [dm6]	C	T	5.848e^-7	0.005	INTERGENIC
2L	10415055	2L_10415055_SNP [dm3] 2L_10415055_SNP [dm6]	C	G	5.975e^-7	0.005	SYNONYMOUS_CODING Klp31E
2L	8396501	2L_8396501_SNP [dm3] 2L_8396501_SNP [dm6]	G	A	5.976e^-7	0.005	UPSTREAM CG13385 & 1 other INTERGENIC
2L	7927348	2L_7927348_SNP [dm3] 2L_7927348_SNP [dm6]	C	T	5.985e^-7	0.005	INTRON Snoo
3L	12981222	3L_12981222_INS [dm3] 3L_12988122_INS [dm6]	T	TTTTATTTATAACAT...	6.017e^-7	0.005	INTERGENIC
3L	9971548	3L_9971548_SNP [dm3] 3L_9978448_SNP [dm6]	C	T	6.174e^-7	0.005	INTRON dpr6
2R	5057893	2R_5057893_SNP [dm3] 2R_9170388_SNP [dm6]	T	A	6.216e^-7	0.006	INTRON Rme-8	TF binding site mE1_TFBS_cad
3R	16842947	3R_16842947_SNP [dm3] 3R_21017225_SNP [dm6]	A	T	6.296e^-7	0.006	UPSTREAM Rlip DOWNSTREAM CG5697 INTERGENIC
3L	18865047	3L_18865047_SNP [dm3] 3L_18871947_SNP [dm6]	C	G	6.307e^-7	0.006	UPSTREAM Ugt INTRON Rad9	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	9972037	2R_9972037_SNP [dm3] 2R_14084532_SNP [dm6]	C	A	6.402e^-7	0.006	INTRON Prosap	TF binding site mE1_TFBS_bab1
3L	7344538	3L_7344538_SNP [dm3] 3L_7351438_SNP [dm6]	A	G	6.404e^-7	0.006	INTRON qm
2L	20053908	2L_20053908_SNP [dm3] 2L_20053908_SNP [dm6]	C	A	6.605e^-7	0.006	INTRON sNPF
3L	1217128	3L_1217128_DEL [dm3] 3L_1217128_DEL [dm6]	AAAGACTGGGTTCCA...	A	7.014e^-7	0.006	DOWNSTREAM LysP INTRON mwh	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1217194	3L_1217194_SNP [dm3] 3L_1217194_SNP [dm6]	G	A	7.014e^-7	0.006	DOWNSTREAM LysP INTRON mwh	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	1670563	X_1670563_SNP [dm3] X_1776530_SNP [dm6]	C	G	7.053e^-7	0.006	INTRON Adar & 1 other
2R	898255	2R_898255_SNP [dm3] 2R_5010750_SNP [dm6]	T	C	7.293e^-7	0.006	INTRON Ir41a	transposable element FlyBase
2R	9030583	2R_9030583_SNP [dm3] 2R_13143078_SNP [dm6]	T	G	7.310e^-7	0.006	UTR_3_PRIME Ack-like DOWNSTREAM Cap-G
2L	17003719	2L_17003719_SNP [dm3] 2L_17003719_SNP [dm6]	T	C	7.435e^-7	0.006	INTERGENIC
2L	10751660	2L_10751660_SNP [dm3] 2L_10751660_SNP [dm6]	T	A	7.442e^-7	0.006	INTRON CG17124	TF binding site mE1_TFBS_cad
2L	10424722	2L_10424722_SNP [dm3] 2L_10424722_SNP [dm6]	C	T	7.586e^-7	0.006	DOWNSTREAM SmB INTRON CG5168
2R	1606838	2R_1606838_SNP [dm3] 2R_5719333_SNP [dm6]	A	G	7.811e^-7	0.006	INTRON ap
3L	18865379	3L_18865379_SNP [dm3] 3L_18872279_SNP [dm6]	G	A	7.998e^-7	0.007	SYNONYMOUS_CODING Rad9 UPSTREAM Ugt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	1627658	2R_1627658_SNP [dm3] 2R_5740153_SNP [dm6]	T	A	8.009e^-7	0.007	INTERGENIC	regulatory region REDfly_CRMs
2R	1741755	2R_1741755_DEL [dm3] 2R_5854250_DEL [dm6]	CA	C	8.046e^-7	0.007	INTRON dpr12
3L	13249845	3L_13249845_DEL [dm3] 3L_13256745_DEL [dm6]	AA	A	8.123e^-7	0.007	INTRON caps
3R	23684274	3R_23684274_SNP [dm3] 3R_27858552_SNP [dm6]	C	T	8.182e^-7	0.007	INTRON CG34353
3R	16842500	3R_16842500_SNP [dm3] 3R_21016778_SNP [dm6]	T	C	8.324e^-7	0.007	UTR_3_PRIME CG5697 UPSTREAM Rlip	TF binding site mE1_TFBS_cad
2L	8462006	2L_8462006_SNP [dm3] 2L_8462006_SNP [dm6]	T	G	8.544e^-7	0.007	INTRON fu12
X	13328649	X_13328649_INS [dm3] X_13434616_INS [dm6]	A	AC	8.658e^-7	0.007	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7106339	3L_7106339_SNP [dm3] 3L_7113239_SNP [dm6]	C	T	8.729e^-7	0.007	INTRON form3
2L	6557798	2L_6557798_INS [dm3] 2L_6557798_INS [dm6]	T	TT	8.733e^-7	0.007	UPSTREAM CoVb & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5812887	3L_5812887_SNP [dm3] 3L_5819787_SNP [dm6]	G	T	8.763e^-7	0.007	INTRON vn
2L	9770319	2L_9770319_SNP [dm3] 2L_9770319_SNP [dm6]	G	A	8.855e^-7	0.007	SYNONYMOUS_CODING CG17633 DOWNSTREAM ppk16 INTRON ppk18	TF binding site mE1_TFBS_cad
X	1767396	X_1767396_SNP [dm3] X_1873363_SNP [dm6]	T	C	8.884e^-7	0.007	SYNONYMOUS_CODING Pgam5 UPSTREAM Vps26 DOWNSTREAM CG14803	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	8301735	2L_8301735_SNP [dm3] 2L_8301735_SNP [dm6]	A	G	9.034e^-7	0.007	SYNONYMOUS_CODING wol UPSTREAM Btk29A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	5718431	2L_5718431_SNP [dm3] 2L_5718431_SNP [dm6]	G	A	9.156e^-7	0.007	SYNONYMOUS_CODING CG11149 DOWNSTREAM CG34011
2L	16627727	2L_16627727_SNP [dm3] 2L_16627727_SNP [dm6]	G	A	9.305e^-7	0.007	INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	3198213	3L_3198213_SNP [dm3] 3L_3198213_SNP [dm6]	A	T	9.345e^-7	0.007	UTR_3_PRIME CG32276 UPSTREAM CG14966 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3R	11295578	3R_11295578_DEL [dm3] 3R_15469856_DEL [dm6]	GGG	G	9.375e^-7	0.007	INTRON AdamTS-A
2L	15421138	2L_15421138_SNP [dm3] 2L_15421138_SNP [dm6]	T	C	9.385e^-7	0.007	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2223992	3L_2223992_SNP [dm3] 3L_2223992_SNP [dm6]	G	A	9.487e^-7	0.007	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16215223	3L_16215223_SNP [dm3] 3L_16222123_SNP [dm6]	A	G	9.497e^-7	0.007	DOWNSTREAM tRNA:CR32153 INTERGENIC
X	2487168	X_2487168_SNP [dm3] X_2593135_SNP [dm6]	A	T	9.803e^-7	0.007	UPSTREAM egh INTRON egh
3R	11981829	3R_11981829_SNP [dm3] 3R_16156107_SNP [dm6]	T	G	9.808e^-7	0.007	INTRON CG6006	TF binding site mE1_TFBS_cad
2L	15051734	2L_15051734_DEL [dm3] 2L_15051734_DEL [dm6]	AG	T	9.984e^-7	0.007	SPLICE_SITE_REGION ck INTRON ck	regulatory region REDfly_CRMs
3R	10732892	3R_10732892_SNP [dm3] 3R_14907170_SNP [dm6]	G	A	1.005e^-6	0.007	INTERGENIC
3R	10732900	3R_10732900_SNP [dm3] 3R_14907178_SNP [dm6]	C	G	1.005e^-6	0.007	INTERGENIC
3L	15906491	3L_15906491_SNP [dm3] 3L_15913391_SNP [dm6]	T	C	1.070e^-6	0.008	INTRON sff
2R	12459549	2R_12459549_SNP [dm3] 2R_16572044_SNP [dm6]	C	T	1.098e^-6	0.008	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
2R	19191138	2R_19191138_SNP [dm3] 2R_23303615_SNP [dm6]	G	A	1.100e^-6	0.008	INTERGENIC
2R	19191141	2R_19191141_SNP [dm3] 2R_23303618_SNP [dm6]	C	G	1.100e^-6	0.008	INTERGENIC
2R	5119578	2R_5119578_DEL [dm3] 2R_9232073_DEL [dm6]	ATGTT	A	1.125e^-6	0.008	INTRON hig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18627517	2L_18627517_SNP [dm3] 2L_18627517_SNP [dm6]	G	T	1.136e^-6	0.008	INTRON MESR3	TF binding site mE1_TFBS_Trl
2R	1608457	2R_1608457_SNP [dm3] 2R_5720952_SNP [dm6]	C	T	1.148e^-6	0.008	INTRON ap	transposable element FlyBase
3L	15413174	3L_15413174_SNP [dm3] 3L_15420074_SNP [dm6]	A	G	1.168e^-6	0.008	INTERGENIC
2L	15421161	2L_15421161_SNP [dm3] 2L_15421161_SNP [dm6]	G	A	1.185e^-6	0.008	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2809917	2L_2809917_SNP [dm3] 2L_2809917_SNP [dm6]	C	A	1.186e^-6	0.008	NON_SYNONYMOUS_CODING daw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	796473	2R_796473_SNP [dm3] 2R_4908968_SNP [dm6]	G	C	1.197e^-6	0.009	INTERGENIC
3L	18450394	3L_18450394_SNP [dm3] 3L_18457294_SNP [dm6]	C	G	1.251e^-6	0.009	UPSTREAM CR44670 EXON CR44671
3L	18133127	3L_18133127_INS [dm3] 3L_18140027_INS [dm6]	T	TTT	1.267e^-6	0.009	INTRON gk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	13443682	X_13443682_INS [dm3] X_13549649_INS [dm6]	G	GTGCATATG	1.277e^-6	0.009	INTERGENIC
2R	15900122	2R_15900122_SNP [dm3] 2R_20012617_SNP [dm6]	G	C	1.289e^-6	0.009	INTERGENIC	TF binding site mE1_TFBS_run
2R	5588203	2R_5588203_SNP [dm3] 2R_9700698_SNP [dm6]	A	G	1.295e^-6	0.009	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18250403	3L_18250403_INS [dm3] 3L_18257303_INS [dm6]	A	AC	1.354e^-6	0.009	INTERGENIC
2R	3889884	2R_3889884_SNP [dm3] 2R_8002379_SNP [dm6]	C	A	1.359e^-6	0.009	UPSTREAM CG11191 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	7544588	2R_7544588_SNP [dm3] 2R_11657083_SNP [dm6]	G	T	1.362e^-6	0.009	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1019987	3L_1019987_SNP [dm3] 3L_1019987_SNP [dm6]	T	C	1.372e^-6	0.009	INTRON trio
3R	19832108	3R_19832108_SNP [dm3] 3R_24006386_SNP [dm6]	T	C	1.375e^-6	0.009	UTR_5_PRIME KrT95D INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3881832	2L_3881832_SNP [dm3] 2L_3881832_SNP [dm6]	T	C	1.395e^-6	0.01	INTRON capu
2R	10529447	2R_10529447_SNP [dm3] 2R_14641942_SNP [dm6]	T	C	1.410e^-6	0.01	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9580147	2L_9580147_SNP [dm3] 2L_9580147_SNP [dm6]	A	G	1.426e^-6	0.01	SYNONYMOUS_CODING gcm UPSTREAM CG31709	TF binding site mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	9580159	2L_9580159_SNP [dm3] 2L_9580159_SNP [dm6]	T	G	1.426e^-6	0.01	SYNONYMOUS_CODING gcm UPSTREAM CG31709	TF binding site mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2R	1120513	2R_1120513_DEL [dm3] 2R_5233008_DEL [dm6]	CAAACGCTATGAGAATAGCA...	G	1.430e^-6	0.01	INTRON Nipped-A	transposable element FlyBase
X	17350043	X_17350043_SNP [dm3] X_17456010_SNP [dm6]	G	A	1.432e^-6	0.01	DOWNSTREAM CG43658 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7088810	2L_7088810_SNP [dm3] 2L_7088810_SNP [dm6]	C	A	1.447e^-6	0.01	INTERGENIC
X	14245119	X_14245119_SNP [dm3] X_14351086_SNP [dm6]	C	G	1.477e^-6	0.01	INTRON dpr8
2R	12301245	2R_12301245_DEL [dm3] 2R_16413740_DEL [dm6]	TTT	T	1.507e^-6	0.01	INTRON Sema-2b
2L	15742563	2L_15742563_SNP [dm3] 2L_15742563_SNP [dm6]	T	A	1.542e^-6	0.01	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
2L	15347640	2L_15347640_SNP [dm3] 2L_15347640_SNP [dm6]	G	A	1.563e^-6	0.01	INTERGENIC
2L	2842390	2L_2842390_SNP [dm3] 2L_2842390_SNP [dm6]	C	T	1.618e^-6	0.011	SYNONYMOUS_CODING CG2975 DOWNSTREAM CG18558
2L	2842393	2L_2842393_SNP [dm3] 2L_2842393_SNP [dm6]	T	A	1.618e^-6	0.011	SYNONYMOUS_CODING CG2975 DOWNSTREAM CG18558
2L	2842903	2L_2842903_SNP [dm3] 2L_2842903_SNP [dm6]	G	A	1.618e^-6	0.011	SYNONYMOUS_CODING CG18558 DOWNSTREAM CG2975
2L	2842952	2L_2842952_SNP [dm3] 2L_2842952_SNP [dm6]	C	G	1.618e^-6	0.011	SYNONYMOUS_CODING CG18558 DOWNSTREAM CG2975
3L	6567202	3L_6567202_DEL [dm3] 3L_6574102_DEL [dm6]	TT	T	1.626e^-6	0.011	INTRON CG18769 & 1 other
2L	7448173	2L_7448173_SNP [dm3] 2L_7448173_SNP [dm6]	G	A	1.648e^-6	0.011	UTR_5_PRIME santa-maria INTRON santa-maria
2L	7448174	2L_7448174_SNP [dm3] 2L_7448174_SNP [dm6]	T	A	1.648e^-6	0.011	UTR_5_PRIME santa-maria INTRON santa-maria
2L	12331906	2L_12331906_SNP [dm3] 2L_12331906_SNP [dm6]	G	A	1.665e^-6	0.011	INTERGENIC
3L	1218539	3L_1218539_SNP [dm3] 3L_1218539_SNP [dm6]	G	T	1.670e^-6	0.011	SYNONYMOUS_CODING LysP INTRON mwh
2R	9034477	2R_9034477_SNP [dm3] 2R_13146972_SNP [dm6]	C	T	1.673e^-6	0.011	NON_SYNONYMOUS_CODING Ack-like INTRON Ack-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23278199	3R_23278199_SNP [dm3] 3R_27452477_SNP [dm6]	G	A	1.718e^-6	0.011	INTERGENIC
X	7852612	X_7852612_SNP [dm3] X_7958579_SNP [dm6]	A	G	1.741e^-6	0.011	UPSTREAM CR45620 INTRON sws	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	4796250	2L_4796250_SNP [dm3] 2L_4796250_SNP [dm6]	C	G	1.813e^-6	0.011	DOWNSTREAM Clect27 INTRON CG3294
2R	5571029	2R_5571029_SNP [dm3] 2R_9683524_SNP [dm6]	G	A	1.825e^-6	0.011	UTR_5_PRIME Mmp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16624625	2L_16624625_SNP [dm3] 2L_16624625_SNP [dm6]	G	A	1.834e^-6	0.011	INTRON CG42389
2L	16540885	2L_16540885_SNP [dm3] 2L_16540885_SNP [dm6]	C	T	1.842e^-6	0.012	INTERGENIC
2L	15421125	2L_15421125_SNP [dm3] 2L_15421125_SNP [dm6]	C	A	1.850e^-6	0.012	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15933298	2R_15933298_SNP [dm3] 2R_20045793_SNP [dm6]	T	A	1.858e^-6	0.012	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16624872	2L_16624872_INS [dm3] 2L_16624872_INS [dm6]	G	AA	1.880e^-6	0.012	INTRON CG42389
2R	17421072	2R_17421072_SNP [dm3] 2R_21533567_SNP [dm6]	T	A	1.890e^-6	0.012	INTRON Egfr
2R	5325394	2R_5325394_SNP [dm3] 2R_9437889_SNP [dm6]	A	T	1.917e^-6	0.012	INTRON ced-6
2L	14267951	2L_14267951_SNP [dm3] 2L_14267951_SNP [dm6]	C	T	1.917e^-6	0.012	INTRON wb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15146548	2L_15146548_SNP [dm3] 2L_15146548_SNP [dm6]	T	A	1.919e^-6	0.012	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6368566	2L_6368566_SNP [dm3] 2L_6368566_SNP [dm6]	G	A	1.939e^-6	0.012	SYNONYMOUS_CODING CG9505	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	19997900	2L_19997900_SNP [dm3] 2L_19997900_SNP [dm6]	T	A	1.948e^-6	0.012	INTRON CG43861
3R	5357016	3R_5357016_SNP [dm3] 3R_9531294_SNP [dm6]	A	G	1.956e^-6	0.012	NON_SYNONYMOUS_CODING by	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4796184	2L_4796184_SNP [dm3] 2L_4796184_SNP [dm6]	A	G	1.991e^-6	0.012	SYNONYMOUS_CODING CG3294 UTR_3_PRIME CG3294 DOWNSTREAM Clect27
2L	20378728	2L_20378728_SNP [dm3] 2L_20378728_SNP [dm6]	T	C	2.012e^-6	0.012	INTRON CG16798	TF binding site mE1_TFBS_cad
2R	15047107	2R_15047107_SNP [dm3] 2R_19159602_SNP [dm6]	T	A	2.041e^-6	0.012	INTRON ena
X	9998136	X_9998136_INS [dm3] X_10104103_INS [dm6]	A	ATGG	2.063e^-6	0.012	INTRON RhoU
2L	6145823	2L_6145823_SNP [dm3] 2L_6145823_SNP [dm6]	G	A	2.064e^-6	0.012	DOWNSTREAM CG13991 INTERGENIC
2L	8372814	2L_8372814_SNP [dm3] 2L_8372814_SNP [dm6]	T	A	2.095e^-6	0.012	INTRON CG17292	TF binding site mE1_TFBS_HSA
2L	13047692	2L_13047692_INS [dm3] 2L_13047692_INS [dm6]	C	CC	2.120e^-6	0.013	INTRON CG9932
3L	1218515	3L_1218515_SNP [dm3] 3L_1218515_SNP [dm6]	G	C	2.131e^-6	0.013	SYNONYMOUS_CODING LysP INTRON mwh
2R	16694360	2R_16694360_SNP [dm3] 2R_20806855_SNP [dm6]	T	C	2.144e^-6	0.013	INTERGENIC
3L	14366328	3L_14366328_SNP [dm3] 3L_14373228_SNP [dm6]	A	G	2.158e^-6	0.013	INTERGENIC
3R	23278177	3R_23278177_SNP [dm3] 3R_27452455_SNP [dm6]	A	G	2.166e^-6	0.013	INTERGENIC
3R	13072271	3R_13072271_INS [dm3] 3R_17246549_INS [dm6]	G	GC	2.183e^-6	0.013	INTRON beat-IIb
2R	1610637	2R_1610637_SNP [dm3] 2R_5723132_SNP [dm6]	A	C	2.201e^-6	0.013	INTRON ap	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	6356402	2L_6356402_SNP [dm3] 2L_6356402_SNP [dm6]	C	T	2.209e^-6	0.013	SYNONYMOUS_CODING ppk14 DOWNSTREAM CG9500	TF binding site mE1_TFBS_bab1 mE1_TFBS_chinmo
2L	1082785	2L_1082785_SNP [dm3] 2L_1082785_SNP [dm6]	C	T	2.242e^-6	0.013	DOWNSTREAM CG4629 INTRON Atg4a	TF binding site mE1_TFBS_inv
X	18998189	X_18998189_SNP [dm3] X_19104156_SNP [dm6]	A	G	2.265e^-6	0.013	INTERGENIC
2R	5489962	2R_5489962_SNP [dm3] 2R_9602457_SNP [dm6]	G	A	2.270e^-6	0.013	SYNONYMOUS_CODING CG30339 INTRON CG1902
2R	5490034	2R_5490034_SNP [dm3] 2R_9602529_SNP [dm6]	T	A	2.270e^-6	0.013	INTRON CG1902 & 1 other
3L	11647438	3L_11647438_INS [dm3] 3L_11654338_INS [dm6]	T	TT	2.270e^-6	0.013	INTRON CG32085
3L	11647503	3L_11647503_SNP [dm3] 3L_11654403_SNP [dm6]	A	T	2.270e^-6	0.013	INTRON CG32085
X	13997517	X_13997517_SNP [dm3] X_14103484_SNP [dm6]	C	T	2.271e^-6	0.013	UPSTREAM tRNA:S4:12Ee DOWNSTREAM tRNA:R:12Ef INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	857128	X_857128_DEL [dm3] X_963095_DEL [dm6]	TCATGTTT	AG	2.272e^-6	0.013	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20052998	3R_20052998_SNP [dm3] 3R_24227276_SNP [dm6]	C	T	2.295e^-6	0.013	SYNONYMOUS_CODING CG13609 UPSTREAM Spps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	15233497	2R_15233497_INS [dm3] 2R_19345992_INS [dm6]	G	GAATG	2.299e^-6	0.013	DOWNSTREAM CG9975 INTRON Rgk1
2L	16803634	2L_16803634_SNP [dm3] 2L_16803634_SNP [dm6]	A	T	2.315e^-6	0.013	NON_SYNONYMOUS_CODING CG13280 UTR_5_PRIME CG13280
2R	15761591	2R_15761591_SNP [dm3] 2R_19874086_SNP [dm6]	C	G	2.323e^-6	0.013	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	15616414	3R_15616414_SNP [dm3] 3R_19790692_SNP [dm6]	A	G	2.352e^-6	0.013	UPSTREAM tRNA:CR31215 DOWNSTREAM tRNA:V3b:92Bb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11706759	2L_11706759_SNP [dm3] 2L_11706759_SNP [dm6]	T	G	2.355e^-6	0.013	INTERGENIC
2L	20710665	2L_20710665_SNP [dm3] 2L_20710665_SNP [dm6]	G	C	2.366e^-6	0.013	UPSTREAM CR44188 INTRON Hr38 EXON CR44187
2L	5862677	2L_5862677_SNP [dm3] 2L_5862677_SNP [dm6]	C	T	2.371e^-6	0.013	INTRON rau
3L	12620031	3L_12620031_SNP [dm3] 3L_12626931_SNP [dm6]	G	A	2.375e^-6	0.013	INTERGENIC
3L	1209944	3L_1209944_SNP [dm3] 3L_1209944_SNP [dm6]	G	C	2.390e^-6	0.013	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh	TF binding site mE1_TFBS_inv
3L	1210244	3L_1210244_INS [dm3] 3L_1210244_INS [dm6]	G	GGGGTTG	2.390e^-6	0.013	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
3L	1210252	3L_1210252_SNP [dm3] 3L_1210252_SNP [dm6]	G	A	2.390e^-6	0.013	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
3L	1210253	3L_1210253_INS [dm3] 3L_1210253_INS [dm6]	T	TCTGCTTTTTCTG...	2.390e^-6	0.013	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
3L	1210255	3L_1210255_SNP [dm3] 3L_1210255_SNP [dm6]	C	A	2.390e^-6	0.013	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
3L	1210259	3L_1210259_MNP [dm3] 3L_1210259_MNP [dm6]	GACGA	ATTCC	2.390e^-6	0.013	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
3L	1210268	3L_1210268_SNP [dm3] 3L_1210268_SNP [dm6]	C	T	2.390e^-6	0.013	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
3L	1210272	3L_1210272_INS [dm3] 3L_1210272_INS [dm6]	A	AGTCA	2.390e^-6	0.013	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
3L	20121591	3L_20121591_DEL [dm3] 3L_20128491_DEL [dm6]	GAATGGTAATA...	T	2.443e^-6	0.013	UPSTREAM gig INTERGENIC
3L	18119061	3L_18119061_SNP [dm3] 3L_18125961_SNP [dm6]	A	T	2.496e^-6	0.013	INTERGENIC
2R	8291734	2R_8291734_SNP [dm3] 2R_12404229_SNP [dm6]	A	G	2.503e^-6	0.013	SYNONYMOUS_CODING Cpr49Ae	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10918679	2L_10918679_SNP [dm3] 2L_10918679_SNP [dm6]	A	G	2.518e^-6	0.013	INTRON dpr2
X	12180387	X_12180387_SNP [dm3] X_12286354_SNP [dm6]	T	C	2.531e^-6	0.013	SYNONYMOUS_CODING Ten-a	TF binding site mE1_TFBS_chinmo
2R	6927499	2R_6927499_SNP [dm3] 2R_11039994_SNP [dm6]	T	A	2.535e^-6	0.013	INTRON luna
2L	11279971	2L_11279971_SNP [dm3] 2L_11279971_SNP [dm6]	A	C	2.535e^-6	0.013	UTR_3_PRIME CG33695 UPSTREAM Ppt2 DOWNSTREAM CR44182 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	18281098	X_18281098_SNP [dm3] X_18387065_SNP [dm6]	G	T	2.559e^-6	0.013	UPSTREAM Tsf1 INTERGENIC
3L	15623133	3L_15623133_SNP [dm3] 3L_15630033_SNP [dm6]	G	A	2.601e^-6	0.014	INTRON comm3
3R	10344868	3R_10344868_DEL [dm3] 3R_14519146_DEL [dm6]	TATAA	T	2.613e^-6	0.014	INTRON Pde6
3R	10344900	3R_10344900_DEL [dm3] 3R_14519178_DEL [dm6]	TGCCGT	T	2.613e^-6	0.014	INTRON Pde6
X	4736880	X_4736880_SNP [dm3] X_4842847_SNP [dm6]	C	G	2.625e^-6	0.014	INTRON CG42594	TF binding site mE1_TFBS_inv
2L	9152532	2L_9152532_SNP [dm3] 2L_9152532_SNP [dm6]	G	A	2.633e^-6	0.014	INTRON CG32982
3L	9403090	3L_9403090_SNP [dm3] 3L_9409990_SNP [dm6]	T	G	2.634e^-6	0.014	UTR_5_PRIME CG4022	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	3234517	2L_3234517_SNP [dm3] 2L_3234517_SNP [dm6]	G	T	2.634e^-6	0.014	INTERGENIC
X	8613675	X_8613675_SNP [dm3] X_8719642_SNP [dm6]	T	C	2.674e^-6	0.014	SYNONYMOUS_CODING l_1_G0020 UPSTREAM CG1789	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	1600071	2R_1600071_SNP [dm3] 2R_5712566_SNP [dm6]	C	T	2.690e^-6	0.014	INTRON ap	TF binding site mE1_TFBS_cad
X	5858203	X_5858203_INS [dm3] X_5964170_INS [dm6]	G	GG	2.747e^-6	0.014	UTR_5_PRIME fs_1_M3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5859357	X_5859357_DEL [dm3] X_5965324_DEL [dm6]	TACCATTTCTAGTTGGCTTA...	T	2.747e^-6	0.014	UPSTREAM Grip INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13483784	2R_13483784_SNP [dm3] 2R_17596279_SNP [dm6]	A	G	2.763e^-6	0.014	SYNONYMOUS_CODING CG11423 INTRON lack
2L	14229557	2L_14229557_SNP [dm3] 2L_14229557_SNP [dm6]	G	A	2.781e^-6	0.014	INTRON Dyrk2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17989755	2L_17989755_SNP [dm3] 2L_17989755_SNP [dm6]	A	G	2.782e^-6	0.014	UPSTREAM Prosbeta5R2 INTERGENIC
X	14241988	X_14241988_SNP [dm3] X_14347955_SNP [dm6]	A	T	2.809e^-6	0.014	INTRON dpr8
X	14241990	X_14241990_SNP [dm3] X_14347957_SNP [dm6]	G	A	2.809e^-6	0.014	INTRON dpr8
3L	18568662	3L_18568662_SNP [dm3] 3L_18575562_SNP [dm6]	T	C	2.817e^-6	0.014	UTR_3_PRIME AstC-R1	TF binding site mE1_TFBS_inv
2R	4663357	2R_4663357_SNP [dm3] 2R_8775852_SNP [dm6]	G	A	2.891e^-6	0.014	INTERGENIC
2L	8005762	2L_8005762_SNP [dm3] 2L_8005762_SNP [dm6]	G	C	2.921e^-6	0.015	INTRON Spn28Dc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15232848	2L_15232848_SNP [dm3] 2L_15232848_SNP [dm6]	T	C	2.932e^-6	0.015	INTRON ZnT35C	TF binding site mE1_TFBS_cad
3R	20392857	3R_20392857_SNP [dm3] 3R_24567135_SNP [dm6]	T	A	2.957e^-6	0.015	INTRON CG13624	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
3R	10388048	3R_10388048_SNP [dm3] 3R_14562326_SNP [dm6]	A	T	2.984e^-6	0.015	UPSTREAM CG14851 DOWNSTREAM CG14850 INTERGENIC	TF binding site mE1_TFBS_cad
2L	14249623	2L_14249623_SNP [dm3] 2L_14249623_SNP [dm6]	T	G	3.014e^-6	0.015	INTERGENIC
2R	10290951	2R_10290951_SNP [dm3] 2R_14403446_SNP [dm6]	T	A	3.019e^-6	0.015	INTERGENIC
X	10009508	X_10009508_DEL [dm3] X_10115475_DEL [dm6]	TT	T	3.057e^-6	0.015	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	17268653	2L_17268653_DEL [dm3] 2L_17268653_DEL [dm6]	CGGTAGCAGGTTTTCCCACT...	C	3.058e^-6	0.015	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	16229472	3L_16229472_SNP [dm3] 3L_16236372_SNP [dm6]	T	C	3.168e^-6	0.015	UTR_3_PRIME l_3_72Dp
2R	11770990	2R_11770990_DEL [dm3] 2R_15883485_DEL [dm6]	TT	T	3.215e^-6	0.016	INTRON sli
3R	15616092	3R_15616092_SNP [dm3] 3R_19790370_SNP [dm6]	G	T	3.221e^-6	0.016	UPSTREAM tRNA:CR31215 DOWNSTREAM tRNA:V3b:92Bb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1170584	3L_1170584_SNP [dm3] 3L_1170584_SNP [dm6]	C	T	3.226e^-6	0.016	INTRON bab2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6201636	2L_6201636_SNP [dm3] 2L_6201636_SNP [dm6]	C	A	3.293e^-6	0.016	INTRON CG34380	TF binding site mE1_TFBS_chinmo
2R	17548551	2R_17548551_SNP [dm3] 2R_21661046_SNP [dm6]	T	A	3.296e^-6	0.016	UTR_3_PRIME pirk
3L	10705663	3L_10705663_SNP [dm3] 3L_10712563_SNP [dm6]	G	T	3.342e^-6	0.016	INTERGENIC
3L	7106386	3L_7106386_SNP [dm3] 3L_7113286_SNP [dm6]	G	A	3.389e^-6	0.016	INTRON form3
2L	11706856	2L_11706856_SNP [dm3] 2L_11706856_SNP [dm6]	C	A	3.393e^-6	0.016	INTERGENIC
2L	20440162	2L_20440162_DEL [dm3] 2L_20440162_DEL [dm6]	TGTATATTCACTGT...	A	3.434e^-6	0.016	INTRON CG31688	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14232023	2L_14232023_SNP [dm3] 2L_14232023_SNP [dm6]	C	G	3.441e^-6	0.016	INTRON Dyrk2	TF binding site BDTNP1_TFBS_twi
X	14242196	X_14242196_SNP [dm3] X_14348163_SNP [dm6]	T	C	3.462e^-6	0.016	INTRON dpr8
2L	14313056	2L_14313056_INS [dm3] 2L_14313056_INS [dm6]	A	AATCA	3.468e^-6	0.016	INTRON wb
2L	20469007	2L_20469007_SNP [dm3] 2L_20469007_SNP [dm6]	T	C	3.485e^-6	0.016	INTRON CR44980
2L	20469069	2L_20469069_SNP [dm3] 2L_20469069_SNP [dm6]	C	T	3.485e^-6	0.016	INTRON CR44980
3L	11514086	3L_11514086_SNP [dm3] 3L_11520986_SNP [dm6]	T	C	3.489e^-6	0.016	UPSTREAM Fuca DOWNSTREAM CG11714 INTERGENIC
3L	15554381	3L_15554381_SNP [dm3] 3L_15561281_SNP [dm6]	G	A	3.524e^-6	0.016	SYNONYMOUS_CODING CG7739 DOWNSTREAM AGO2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16427219	2R_16427219_SNP [dm3] 2R_20539714_SNP [dm6]	C	T	3.542e^-6	0.017	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20392852	3R_20392852_SNP [dm3] 3R_24567130_SNP [dm6]	T	C	3.591e^-6	0.017	INTRON CG13624	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
2L	7634822	2L_7634822_SNP [dm3] 2L_7634822_SNP [dm6]	C	A	3.604e^-6	0.017	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12361946	2R_12361946_SNP [dm3] 2R_16474441_SNP [dm6]	C	T	3.632e^-6	0.017	INTERGENIC	TF binding site mE1_TFBS_HSA
X	8172657	X_8172657_SNP [dm3] X_8278624_SNP [dm6]	A	G	3.636e^-6	0.017	UTR_3_PRIME nAChRalpha3
3L	18109407	3L_18109407_SNP [dm3] 3L_18116307_SNP [dm6]	C	A	3.710e^-6	0.017	UTR_3_PRIME CG32195 DOWNSTREAM CG32195 INTRON CG7341
2L	15421130	2L_15421130_SNP [dm3] 2L_15421130_SNP [dm6]	A	G	3.720e^-6	0.017	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15421132	2L_15421132_SNP [dm3] 2L_15421132_SNP [dm6]	A	G	3.720e^-6	0.017	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11663162	3L_11663162_SNP [dm3] 3L_11670062_SNP [dm6]	T	C	3.724e^-6	0.017	INTRON CG32085
2L	14229570	2L_14229570_SNP [dm3] 2L_14229570_SNP [dm6]	C	T	3.732e^-6	0.017	INTRON Dyrk2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20392854	3R_20392854_SNP [dm3] 3R_24567132_SNP [dm6]	G	T	3.751e^-6	0.017	INTRON CG13624	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
2L	14432618	2L_14432618_SNP [dm3] 2L_14432618_SNP [dm6]	A	G	3.751e^-6	0.017	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14698503	2L_14698503_SNP [dm3] 2L_14698503_SNP [dm6]	T	C	3.785e^-6	0.017	INTERGENIC
2L	14706030	2L_14706030_SNP [dm3] 2L_14706030_SNP [dm6]	T	G	3.785e^-6	0.017	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	14715699	2L_14715699_SNP [dm3] 2L_14715699_SNP [dm6]	G	A	3.785e^-6	0.017	INTERGENIC
2L	14721707	2L_14721707_SNP [dm3] 2L_14721707_SNP [dm6]	C	T	3.785e^-6	0.017	INTERGENIC
2L	14724427	2L_14724427_SNP [dm3] 2L_14724427_SNP [dm6]	A	G	3.785e^-6	0.017	DOWNSTREAM CG42685 INTERGENIC
2L	14724491	2L_14724491_SNP [dm3] 2L_14724491_SNP [dm6]	G	A	3.785e^-6	0.017	DOWNSTREAM CG42685 INTERGENIC
2L	14725330	2L_14725330_SNP [dm3] 2L_14725330_SNP [dm6]	T	C	3.785e^-6	0.017	SYNONYMOUS_CODING CG42685
2L	14725838	2L_14725838_SNP [dm3] 2L_14725838_SNP [dm6]	T	C	3.785e^-6	0.017	NON_SYNONYMOUS_CODING CG42685	TF binding site mE1_TFBS_sens
2L	14730969	2L_14730969_SNP [dm3] 2L_14730969_SNP [dm6]	C	T	3.785e^-6	0.017	UPSTREAM CG42685 INTERGENIC
2L	14733605	2L_14733605_SNP [dm3] 2L_14733605_SNP [dm6]	T	C	3.785e^-6	0.017	UPSTREAM CR44857 INTERGENIC
X	12386147	X_12386147_SNP [dm3] X_12492114_SNP [dm6]	C	T	3.785e^-6	0.017	SYNONYMOUS_CODING Lsp1alpha	TF binding site mE1_TFBS_sens
X	18005437	X_18005437_SNP [dm3] X_18111404_SNP [dm6]	C	T	3.785e^-6	0.017	INTRON wupA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5518804	X_5518804_SNP [dm3] X_5624771_SNP [dm6]	T	C	3.785e^-6	0.017	NON_SYNONYMOUS_CODING l_1_G0045 DOWNSTREAM CG42492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16656362	2L_16656362_SNP [dm3] 2L_16656362_SNP [dm6]	A	C	3.808e^-6	0.017	UPSTREAM CG42389 INTRON CG42389
2R	11809805	2R_11809805_SNP [dm3] 2R_15922300_SNP [dm6]	C	T	3.808e^-6	0.017	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
3L	2131401	3L_2131401_SNP [dm3] 3L_2131401_SNP [dm6]	C	T	3.808e^-6	0.017	NON_SYNONYMOUS_CODING zormin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8127110	3L_8127110_SNP [dm3] 3L_8134010_SNP [dm6]	A	T	3.808e^-6	0.017	INTRON CG7504
3L	1617932	3L_1617932_SNP [dm3] 3L_1617932_SNP [dm6]	A	G	3.824e^-6	0.017	SYNONYMOUS_CODING CG13926 UPSTREAM ABCB7 & 1 other DOWNSTREAM CG33791 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	17946082	3R_17946082_SNP [dm3] 3R_22120360_SNP [dm6]	C	T	3.827e^-6	0.017	UTR_5_PRIME CG42390 UPSTREAM Ir94c
X	8613687	X_8613687_SNP [dm3] X_8719654_SNP [dm6]	C	T	3.841e^-6	0.017	SYNONYMOUS_CODING l_1_G0020 UPSTREAM CG1789	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	15267770	3L_15267770_SNP [dm3] 3L_15274670_SNP [dm6]	A	G	3.896e^-6	0.017	INTERGENIC
2R	10962634	2R_10962634_SNP [dm3] 2R_15075129_SNP [dm6]	G	T	3.944e^-6	0.017	INTERGENIC
2R	10962635	2R_10962635_SNP [dm3] 2R_15075130_SNP [dm6]	A	C	3.944e^-6	0.017	INTERGENIC
2R	10962653	2R_10962653_SNP [dm3] 2R_15075148_SNP [dm6]	T	A	3.944e^-6	0.017	INTERGENIC
X	17710188	X_17710188_SNP [dm3] X_17816155_SNP [dm6]	T	C	4.024e^-6	0.017	INTERGENIC
2L	14722964	2L_14722964_SNP [dm3] 2L_14722964_SNP [dm6]	G	T	4.032e^-6	0.017	INTERGENIC
2L	15480216	2L_15480216_SNP [dm3] 2L_15480216_SNP [dm6]	C	T	4.061e^-6	0.017	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	10602764	2L_10602764_SNP [dm3] 2L_10602764_SNP [dm6]	C	T	4.145e^-6	0.018	INTRON Trim9
3R	20038294	3R_20038294_SNP [dm3] 3R_24212572_SNP [dm6]	G	C	4.158e^-6	0.018	INTRON twin
2R	15933799	2R_15933799_SNP [dm3] 2R_20046294_SNP [dm6]	G	A	4.174e^-6	0.018	INTERGENIC
2L	6570397	2L_6570397_SNP [dm3] 2L_6570397_SNP [dm6]	C	A	4.175e^-6	0.018	UTR_3_PRIME CG11319 INTRON CG11319	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10705662	3L_10705662_SNP [dm3] 3L_10712562_SNP [dm6]	T	A	4.203e^-6	0.018	INTERGENIC
2L	12233874	2L_12233874_SNP [dm3] 2L_12233874_SNP [dm6]	T	A	4.208e^-6	0.018	INTRON aret
2R	1620672	2R_1620672_SNP [dm3] 2R_5733167_SNP [dm6]	A	G	4.228e^-6	0.018	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
X	9079909	X_9079909_DEL [dm3] X_9185876_DEL [dm6]	AC	A	4.245e^-6	0.018	UTR_3_PRIME mei-P26
X	3364986	X_3364986_SNP [dm3] X_3470953_SNP [dm6]	A	C	4.251e^-6	0.018	INTRON CR44999 & 1 other
2R	6343405	2R_6343405_SNP [dm3] 2R_10455900_SNP [dm6]	T	A	4.257e^-6	0.018	INTRON Galphao & 1 other
X	8345118	X_8345118_DEL [dm3] X_8451085_DEL [dm6]	ATA	A	4.273e^-6	0.018	INTRON org-1
2L	20498097	2L_20498097_SNP [dm3] 2L_20498097_SNP [dm6]	C	A	4.281e^-6	0.018	INTERGENIC
2R	9965559	2R_9965559_DEL [dm3] 2R_14078054_DEL [dm6]	GTCCGCACGAAGAGAAAAG...	A	4.287e^-6	0.018	INTRON Prosap
2R	14570482	2R_14570482_SNP [dm3] 2R_18682977_SNP [dm6]	T	C	4.332e^-6	0.018	SYNONYMOUS_CODING CG44434 UTR_5_PRIME CG44435
2L	14703380	2L_14703380_SNP [dm3] 2L_14703380_SNP [dm6]	T	A	4.336e^-6	0.018	INTERGENIC
2R	14174601	2R_14174601_SNP [dm3] 2R_18287096_SNP [dm6]	G	A	4.336e^-6	0.018	SYNONYMOUS_CODING sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	15437350	2R_15437350_SNP [dm3] 2R_19549845_SNP [dm6]	A	C	4.336e^-6	0.018	INTRON sm
3L	1440424	3L_1440424_SNP [dm3] 3L_1440424_SNP [dm6]	C	G	4.336e^-6	0.018	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2833995	X_2833995_SNP [dm3] X_2939962_SNP [dm6]	G	C	4.336e^-6	0.018	SYNONYMOUS_CODING CG14420 INTRON kirre
3R	17923076	3R_17923076_SNP [dm3] 3R_22097354_SNP [dm6]	A	T	4.345e^-6	0.018	INTRON CG5778
2L	10602801	2L_10602801_SNP [dm3] 2L_10602801_SNP [dm6]	T	A	4.353e^-6	0.018	INTRON Trim9
3L	8126420	3L_8126420_SNP [dm3] 3L_8133320_SNP [dm6]	G	A	4.401e^-6	0.018	SYNONYMOUS_CODING CG7504
3L	8126507	3L_8126507_SNP [dm3] 3L_8133407_SNP [dm6]	T	C	4.401e^-6	0.018	SYNONYMOUS_CODING CG7504
2L	16620375	2L_16620375_SNP [dm3] 2L_16620375_SNP [dm6]	T	C	4.407e^-6	0.018	INTRON CG42389
2L	16624879	2L_16624879_SNP [dm3] 2L_16624879_SNP [dm6]	A	C	4.407e^-6	0.018	INTRON CG42389
2R	14982948	2R_14982948_SNP [dm3] 2R_19095443_SNP [dm6]	T	G	4.480e^-6	0.018	INTRON 5-HT1A & 1 other
2L	16654094	2L_16654094_SNP [dm3] 2L_16654094_SNP [dm6]	G	A	4.506e^-6	0.018	INTRON CG42389	TF binding site mE1_TFBS_inv
3L	1218248	3L_1218248_SNP [dm3] 3L_1218248_SNP [dm6]	G	T	4.525e^-6	0.018	UTR_3_PRIME LysP INTRON mwh
2L	14744041	2L_14744041_SNP [dm3] 2L_14744041_SNP [dm6]	C	A	4.533e^-6	0.018	UPSTREAM CG42681 DOWNSTREAM CG34166 & 1 other INTERGENIC	transposable element FlyBase
3R	10414966	3R_10414966_SNP [dm3] 3R_14589244_SNP [dm6]	G	A	4.539e^-6	0.018	INTRON stumps	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11095769	3L_11095769_SNP [dm3] 3L_11102669_SNP [dm6]	A	G	4.583e^-6	0.018	SYNONYMOUS_CODING Elo68alpha UPSTREAM Elo68beta DOWNSTREAM CG32071
2R	9475275	2R_9475275_SNP [dm3] 2R_13587770_SNP [dm6]	G	A	4.598e^-6	0.018	INTRON CG6191 & 1 other
X	11661492	X_11661492_SNP [dm3] X_11767459_SNP [dm6]	C	T	4.611e^-6	0.018	SYNONYMOUS_CODING m	TF binding site mE1_TFBS_chinmo
2L	20005033	2L_20005033_INS [dm3] 2L_20005033_INS [dm6]	T	TAGCCAG	4.623e^-6	0.018	INTRON CG43861
2R	13898035	2R_13898035_SNP [dm3] 2R_18010530_SNP [dm6]	C	A	4.647e^-6	0.018	INTERGENIC
2L	6416808	2L_6416808_SNP [dm3] 2L_6416808_SNP [dm6]	A	G	4.657e^-6	0.018	SYNONYMOUS_CODING Tig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18627400	2L_18627400_SNP [dm3] 2L_18627400_SNP [dm6]	T	A	4.668e^-6	0.018	INTRON MESR3	TF binding site mE1_TFBS_Trl
2R	12999247	2R_12999247_SNP [dm3] 2R_17111742_SNP [dm6]	T	A	4.684e^-6	0.018	INTRON CG15611
2L	514210	2L_514210_SNP [dm3] 2L_514210_SNP [dm6]	G	T	4.689e^-6	0.018	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	13719097	2R_13719097_SNP [dm3] 2R_17831592_SNP [dm6]	G	C	4.689e^-6	0.018	INTRON grh	TF binding site mE1_TFBS_cad
3L	1374684	3L_1374684_SNP [dm3] 3L_1374684_SNP [dm6]	G	A	4.689e^-6	0.018	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1374694	3L_1374694_DEL [dm3] 3L_1374694_DEL [dm6]	AA	A	4.689e^-6	0.018	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_inv
3L	1374721	3L_1374721_SNP [dm3] 3L_1374721_SNP [dm6]	A	G	4.689e^-6	0.018	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_inv
2L	14306303	2L_14306303_SNP [dm3] 2L_14306303_SNP [dm6]	C	T	4.694e^-6	0.018	INTRON wb	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
2L	6368623	2L_6368623_SNP [dm3] 2L_6368623_SNP [dm6]	G	T	4.708e^-6	0.018	SYNONYMOUS_CODING CG9505	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8024701	2L_8024701_SNP [dm3] 2L_8024701_SNP [dm6]	C	A	4.736e^-6	0.018	SYNONYMOUS_CODING Tg	TF binding site mE1_TFBS_sens
3L	4415158	3L_4415158_SNP [dm3] 3L_4415158_SNP [dm6]	T	A	4.793e^-6	0.018	INTRON DOR
2L	7358796	2L_7358796_SNP [dm3] 2L_7358796_SNP [dm6]	A	T	4.810e^-6	0.018	INTERGENIC
2L	7358811	2L_7358811_SNP [dm3] 2L_7358811_SNP [dm6]	C	T	4.810e^-6	0.018	INTERGENIC
3R	13894861	3R_13894861_SNP [dm3] 3R_18069139_SNP [dm6]	C	T	4.832e^-6	0.018	INTERGENIC
3L	12693459	3L_12693459_SNP [dm3] 3L_12700359_SNP [dm6]	C	T	4.833e^-6	0.018	INTRON mirr
2R	7550419	2R_7550419_SNP [dm3] 2R_11662914_SNP [dm6]	C	A	4.858e^-6	0.018	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	9972484	2R_9972484_SNP [dm3] 2R_14084979_SNP [dm6]	T	C	4.861e^-6	0.018	INTRON Prosap	TF binding site mE1_TFBS_bab1
2L	12163211	2L_12163211_INS [dm3] 2L_12163211_INS [dm6]	T	TTT	4.895e^-6	0.019	DOWNSTREAM CG31861 INTRON CG31760
3R	16997659	3R_16997659_SNP [dm3] 3R_21171937_SNP [dm6]	C	T	4.957e^-6	0.019	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl
2L	12163227	2L_12163227_INS [dm3] 2L_12163227_INS [dm6]	T	TAAGAAATT	5.021e^-6	0.019	DOWNSTREAM CG31861 INTRON CG31760
3R	23576433	3R_23576433_SNP [dm3] 3R_27750711_SNP [dm6]	G	A	5.097e^-6	0.019	INTERGENIC
2R	3886715	2R_3886715_SNP [dm3] 2R_7999210_SNP [dm6]	T	C	5.117e^-6	0.019	UPSTREAM Hey INTERGENIC
2L	10935823	2L_10935823_SNP [dm3] 2L_10935823_SNP [dm6]	T	C	5.122e^-6	0.019	UPSTREAM CG14072 INTRON dpr2
2L	20465551	2L_20465551_SNP [dm3] 2L_20465551_SNP [dm6]	T	G	5.156e^-6	0.019	INTRON CR44980
3L	1210256	3L_1210256_SNP [dm3] 3L_1210256_SNP [dm6]	A	T	5.169e^-6	0.019	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
2R	1625228	2R_1625228_SNP [dm3] 2R_5737723_SNP [dm6]	G	A	5.233e^-6	0.02	INTERGENIC	regulatory region REDfly_CRMs
X	14245205	X_14245205_SNP [dm3] X_14351172_SNP [dm6]	T	A	5.268e^-6	0.02	INTRON dpr8
3R	9655454	3R_9655454_INS [dm3] 3R_13829732_INS [dm6]	T	TGAATGA	5.370e^-6	0.02	INTERGENIC
3R	9655461	3R_9655461_SNP [dm3] 3R_13829739_SNP [dm6]	C	T	5.370e^-6	0.02	INTERGENIC
2L	20004605	2L_20004605_SNP [dm3] 2L_20004605_SNP [dm6]	G	T	5.395e^-6	0.02	INTRON CG43861
3R	18729669	3R_18729669_SNP [dm3] 3R_22903947_SNP [dm6]	G	T	5.404e^-6	0.02	INTRON klg	TF binding site mE1_TFBS_chinmo
3R	19889115	3R_19889115_SNP [dm3] 3R_24063393_SNP [dm6]	A	T	5.406e^-6	0.02	UTR_3_PRIME 4EHP DOWNSTREAM SMC1 & 1 other
3R	19889129	3R_19889129_SNP [dm3] 3R_24063407_SNP [dm6]	G	C	5.406e^-6	0.02	UTR_3_PRIME 4EHP DOWNSTREAM SMC1 & 1 other
3R	12974352	3R_12974352_SNP [dm3] 3R_17148630_SNP [dm6]	G	T	5.531e^-6	0.02	INTRON m-cup	TF binding site BDTNP1_TFBS_dl
3R	27033310	3R_27033310_SNP [dm3] 3R_31207588_SNP [dm6]	G	A	5.562e^-6	0.02	INTRON chp
2R	13719096	2R_13719096_SNP [dm3] 2R_17831591_SNP [dm6]	C	T	5.569e^-6	0.02	INTRON grh	TF binding site mE1_TFBS_cad
2R	6847481	2R_6847481_SNP [dm3] 2R_10959976_SNP [dm6]	A	C	5.583e^-6	0.02	INTERGENIC
2L	3784608	2L_3784608_DEL [dm3] 2L_3784608_DEL [dm6]	CCTCATTGGGC...	C	5.623e^-6	0.02	UPSTREAM CG31960 DOWNSTREAM bowl INTERGENIC
2R	11771068	2R_11771068_SNP [dm3] 2R_15883563_SNP [dm6]	A	T	5.672e^-6	0.021	INTRON sli
3L	1375498	3L_1375498_INS [dm3] 3L_1375498_INS [dm6]	A	AAAGGAA	5.673e^-6	0.021	INTRON Ptp61F & 1 other
X	18199355	X_18199355_SNP [dm3] X_18305322_SNP [dm6]	C	T	5.673e^-6	0.021	DOWNSTREAM os INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5006546	3L_5006546_SNP [dm3] 3L_5006546_SNP [dm6]	A	G	5.739e^-6	0.021	INTRON Con
3L	1374970	3L_1374970_SNP [dm3] 3L_1374970_SNP [dm6]	C	A	5.753e^-6	0.021	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_inv
2L	19996233	2L_19996233_SNP [dm3] 2L_19996233_SNP [dm6]	A	G	5.770e^-6	0.021	INTRON CG43861
2L	7926333	2L_7926333_SNP [dm3] 2L_7926333_SNP [dm6]	A	T	5.801e^-6	0.021	INTRON Snoo
2R	14582630	2R_14582630_SNP [dm3] 2R_18695125_SNP [dm6]	G	T	5.803e^-6	0.021	INTRON Sik3	TF binding site BDTNP1_TFBS_dl
3L	12516974	3L_12516974_SNP [dm3] 3L_12523874_SNP [dm6]	T	C	5.815e^-6	0.021	SYNONYMOUS_CODING Gcn5 UPSTREAM ver	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	9399870	3L_9399870_SNP [dm3] 3L_9406770_SNP [dm6]	T	A	5.823e^-6	0.021	UTR_3_PRIME CG4022 DOWNSTREAM Cpr67B & 1 other
2L	6416742	2L_6416742_SNP [dm3] 2L_6416742_SNP [dm6]	G	A	5.830e^-6	0.021	SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12333262	2L_12333262_SNP [dm3] 2L_12333262_SNP [dm6]	G	A	5.833e^-6	0.021	INTERGENIC
2R	1630849	2R_1630849_SNP [dm3] 2R_5743344_SNP [dm6]	G	A	5.870e^-6	0.021	INTERGENIC	regulatory region REDfly_CRMs
2L	22587928	2L_22587928_SNP [dm3] 2L_22695196_SNP [dm6]	G	T	5.877e^-6	0.021	INTRON CG40006
2R	15885228	2R_15885228_SNP [dm3] 2R_19997723_SNP [dm6]	C	T	5.947e^-6	0.021	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	11799817	2R_11799817_SNP [dm3] 2R_15912312_SNP [dm6]	C	T	5.948e^-6	0.021	INTRON sli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13166944	2R_13166944_SNP [dm3] 2R_17279439_SNP [dm6]	C	G	5.951e^-6	0.021	INTRON mbl
3L	17596166	3L_17596166_SNP [dm3] 3L_17603066_SNP [dm6]	A	T	5.978e^-6	0.021	UTR_5_PRIME Eip74EF
2L	19998632	2L_19998632_SNP [dm3] 2L_19998632_SNP [dm6]	G	A	6.053e^-6	0.021	INTRON CG43861
2L	12510541	2L_12510541_SNP [dm3] 2L_12510541_SNP [dm6]	T	G	6.061e^-6	0.021	INTRON bun
2L	12510542	2L_12510542_SNP [dm3] 2L_12510542_SNP [dm6]	T	C	6.061e^-6	0.021	INTRON bun
2L	6368614	2L_6368614_SNP [dm3] 2L_6368614_SNP [dm6]	A	G	6.079e^-6	0.021	SYNONYMOUS_CODING CG9505	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6943782	X_6943782_SNP [dm3] X_7049749_SNP [dm6]	A	G	6.101e^-6	0.021	NON_SYNONYMOUS_CODING nullo INTRON CG12541	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2570840	X_2570840_INS [dm3] X_2676807_INS [dm6]	G	GTGTAACT	6.107e^-6	0.021	DOWNSTREAM sgg & 1 other INTRON sgg
X	2570844	X_2570844_DEL [dm3] X_2676811_DEL [dm6]	TAATCGATTC	T	6.107e^-6	0.021	DOWNSTREAM sgg & 1 other INTRON sgg
2L	11901696	2L_11901696_SNP [dm3] 2L_11901696_SNP [dm6]	T	A	6.152e^-6	0.021	INTRON Pde1c
3L	295889	3L_295889_DEL [dm3] 3L_295889_DEL [dm6]	CC	C	6.158e^-6	0.021	INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10417452	3R_10417452_DEL [dm3] 3R_14591730_DEL [dm6]	TT	T	6.192e^-6	0.021	UTR_5_PRIME stumps INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16615477	2L_16615477_SNP [dm3] 2L_16615477_SNP [dm6]	G	A	6.227e^-6	0.021	INTRON CG42389
X	8063828	X_8063828_SNP [dm3] X_8169795_SNP [dm6]	A	G	6.242e^-6	0.021	SYNONYMOUS_CODING CG2278 DOWNSTREAM slpr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1631121	2R_1631121_SNP [dm3] 2R_5743616_SNP [dm6]	A	G	6.244e^-6	0.021	INTERGENIC	regulatory region REDfly_CRMs
2L	18627437	2L_18627437_SNP [dm3] 2L_18627437_SNP [dm6]	T	A	6.256e^-6	0.021	INTRON MESR3	TF binding site mE1_TFBS_Trl
2L	10958723	2L_10958723_DEL [dm3] 2L_10958723_DEL [dm6]	AA	A	6.261e^-6	0.021	INTRON dpr2	TF binding site BDTNP1_TFBS_twi
2R	19225621	2R_19225621_SNP [dm3] 2R_23338098_SNP [dm6]	A	G	6.287e^-6	0.021	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1606885	2R_1606885_SNP [dm3] 2R_5719380_SNP [dm6]	A	G	6.289e^-6	0.021	INTRON ap
2R	17409052	2R_17409052_SNP [dm3] 2R_21521547_SNP [dm6]	A	T	6.329e^-6	0.022	UPSTREAM Egfr INTRON CG30289	TF binding site BDTNP1_TFBS_dl
2L	3881811	2L_3881811_INS [dm3] 2L_3881811_INS [dm6]	T	TTTTAAATTATTCG...	6.342e^-6	0.022	INTRON capu
2R	17846385	2R_17846385_SNP [dm3] 2R_21958880_SNP [dm6]	G	C	6.356e^-6	0.022	INTERGENIC
3R	8679103	3R_8679103_SNP [dm3] 3R_12853381_SNP [dm6]	C	G	6.362e^-6	0.022	INTERGENIC
2L	11418057	2L_11418057_INS [dm3] 2L_11418057_INS [dm6]	G	GG	6.368e^-6	0.022	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11514123	3L_11514123_SNP [dm3] 3L_11521023_SNP [dm6]	T	C	6.389e^-6	0.022	UTR_3_PRIME CG11714 UPSTREAM Fuca
2L	15061509	2L_15061509_DEL [dm3] 2L_15061509_DEL [dm6]	ACATA	A	6.420e^-6	0.022	UPSTREAM vas & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3199257	3L_3199257_SNP [dm3] 3L_3199257_SNP [dm6]	A	T	6.465e^-6	0.022	UTR_5_PRIME gry UPSTREAM CG32276	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	3199280	3L_3199280_SNP [dm3] 3L_3199280_SNP [dm6]	G	C	6.465e^-6	0.022	UTR_5_PRIME gry UPSTREAM CG32276	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	16628186	2L_16628186_SNP [dm3] 2L_16628186_SNP [dm6]	G	C	6.528e^-6	0.022	DOWNSTREAM CR44151 INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	14124572	3L_14124572_SNP [dm3] 3L_14131472_SNP [dm6]	C	T	6.552e^-6	0.022	UPSTREAM Sox21b INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	14125305	3L_14125305_SNP [dm3] 3L_14132205_SNP [dm6]	C	T	6.552e^-6	0.022	UPSTREAM Sox21b INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15480027	2L_15480027_SNP [dm3] 2L_15480027_SNP [dm6]	T	C	6.622e^-6	0.022	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	16987700	3L_16987700_INS [dm3] 3L_16994600_INS [dm6]	C	CGTC	6.641e^-6	0.022	DOWNSTREAM CG3764 & 1 other INTERGENIC
3L	11331800	3L_11331800_SNP [dm3] 3L_11338700_SNP [dm6]	T	C	6.647e^-6	0.022	INTERGENIC
3L	11724834	3L_11724834_SNP [dm3] 3L_11731734_SNP [dm6]	G	A	6.647e^-6	0.022	SYNONYMOUS_CODING CG32088 UPSTREAM CG32087
3L	3194906	3L_3194906_SNP [dm3] 3L_3194906_SNP [dm6]	G	A	6.662e^-6	0.022	SYNONYMOUS_CODING Hsp83	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18622588	2L_18622588_SNP [dm3] 2L_18622588_SNP [dm6]	C	G	6.670e^-6	0.022	INTRON MESR3
3R	16005781	3R_16005781_SNP [dm3] 3R_20180059_SNP [dm6]	G	T	6.759e^-6	0.022	INTERGENIC
X	14245133	X_14245133_SNP [dm3] X_14351100_SNP [dm6]	G	A	6.809e^-6	0.022	INTRON dpr8
2R	18360288	2R_18360288_SNP [dm3] 2R_22472783_SNP [dm6]	A	C	6.814e^-6	0.022	UTR_3_PRIME CG10384 DOWNSTREAM CG45062
2L	13256596	2L_13256596_SNP [dm3] 2L_13256596_SNP [dm6]	T	A	6.897e^-6	0.023	UPSTREAM CG31851 INTRON CG31728	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5776849	2L_5776849_SNP [dm3] 2L_5776849_SNP [dm6]	A	G	6.962e^-6	0.023	INTRON CG9171
2L	16621799	2L_16621799_SNP [dm3] 2L_16621799_SNP [dm6]	C	T	7.029e^-6	0.023	INTRON CG42389
X	884107	X_884107_DEL [dm3] X_990074_DEL [dm6]	TT	T	7.065e^-6	0.023	UPSTREAM CG18823 INTERGENIC
X	6185040	X_6185040_SNP [dm3] X_6291007_SNP [dm6]	A	G	7.080e^-6	0.023	UPSTREAM CG15896 INTRON Rpt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	3877808	2R_3877808_SNP [dm3] 2R_7990303_SNP [dm6]	C	T	7.141e^-6	0.023	NON_SYNONYMOUS_CODING Nup44A UPSTREAM ACC INTRON ACC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Ubx
2R	19218024	2R_19218024_SNP [dm3] 2R_23330501_SNP [dm6]	C	T	7.155e^-6	0.023	UPSTREAM CG30413 INTERGENIC
2R	16929448	2R_16929448_SNP [dm3] 2R_21041943_SNP [dm6]	C	A	7.215e^-6	0.023	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4963976	2L_4963976_SNP [dm3] 2L_4963976_SNP [dm6]	G	C	7.218e^-6	0.023	INTRON CG34124 EXON CR43824	TF binding site mE1_TFBS_cad
3L	18295809	3L_18295809_SNP [dm3] 3L_18302709_SNP [dm6]	A	G	7.232e^-6	0.023	DOWNSTREAM grim INTERGENIC
3R	12758322	3R_12758322_SNP [dm3] 3R_16932600_SNP [dm6]	A	G	7.255e^-6	0.023	SYNONYMOUS_CODING Abd-B UPSTREAM Abd-B INTRON Abd-B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6461067	3L_6461067_SNP [dm3] 3L_6467967_SNP [dm6]	C	A	7.271e^-6	0.023	INTRON CG42747	TF binding site mE1_TFBS_cad
2L	1540233	2L_1540233_SNP [dm3] 2L_1540233_SNP [dm6]	G	A	7.293e^-6	0.023	INTERGENIC
3L	18854839	3L_18854839_SNP [dm3] 3L_18861739_SNP [dm6]	A	G	7.345e^-6	0.023	DOWNSTREAM mir-315 INTERGENIC
2L	16520481	2L_16520481_SNP [dm3] 2L_16520481_SNP [dm6]	T	C	7.367e^-6	0.023	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2R	14582612	2R_14582612_SNP [dm3] 2R_18695107_SNP [dm6]	C	T	7.380e^-6	0.023	INTRON Sik3	TF binding site BDTNP1_TFBS_dl
2L	15530666	2L_15530666_SNP [dm3] 2L_15530666_SNP [dm6]	G	A	7.391e^-6	0.023	INTERGENIC
2L	16420948	2L_16420948_SNP [dm3] 2L_16420948_SNP [dm6]	G	A	7.391e^-6	0.023	INTRON CG5888
3L	14207025	3L_14207025_SNP [dm3] 3L_14213925_SNP [dm6]	G	A	7.395e^-6	0.023	INTRON nuf
3R	18140022	3R_18140022_SNP [dm3] 3R_22314300_SNP [dm6]	A	T	7.455e^-6	0.024	INTRON CG34377
2R	11586635	2R_11586635_SNP [dm3] 2R_15699130_SNP [dm6]	G	T	7.518e^-6	0.024	NON_SYNONYMOUS_CODING CG42662 UTR_3_PRIME CG30080	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	3657220	2R_3657220_SNP [dm3] 2R_7769715_SNP [dm6]	T	A	7.638e^-6	0.024	INTRON CG30497 & 1 other
2L	6325190	2L_6325190_SNP [dm3] 2L_6325190_SNP [dm6]	T	C	7.676e^-6	0.024	UTR_5_PRIME PDZ-GEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	12858506	2L_12858506_INS [dm3] 2L_12858506_INS [dm6]	T	CG	7.686e^-6	0.024	INTERGENIC
2R	19889959	2R_19889959_SNP [dm3] 2R_24002436_SNP [dm6]	G	T	7.695e^-6	0.024	INTRON Unc-89	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7344722	3L_7344722_SNP [dm3] 3L_7351622_SNP [dm6]	T	G	7.705e^-6	0.024	SYNONYMOUS_CODING qm	TF binding site mE1_TFBS_sens
2R	5896424	2R_5896424_SNP [dm3] 2R_10008919_SNP [dm6]	T	C	7.712e^-6	0.024	INTRON Pka-R2
3R	9416068	3R_9416068_SNP [dm3] 3R_13590346_SNP [dm6]	A	G	7.754e^-6	0.024	INTERGENIC
2L	4969233	2L_4969233_SNP [dm3] 2L_4969233_SNP [dm6]	C	T	7.760e^-6	0.024	UPSTREAM Scox DOWNSTREAM l_2_05714 INTRON CG3756	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	10585330	2L_10585330_SNP [dm3] 2L_10585330_SNP [dm6]	A	G	7.783e^-6	0.024	INTRON Trim9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15080808	3R_15080808_SNP [dm3] 3R_19255086_SNP [dm6]	A	C	7.786e^-6	0.024	INTERGENIC
2L	4848778	2L_4848778_SNP [dm3] 2L_4848778_SNP [dm6]	C	A	7.816e^-6	0.024	SYNONYMOUS_CODING CG11927 DOWNSTREAM mRpS2	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	11770808	2R_11770808_SNP [dm3] 2R_15883303_SNP [dm6]	A	C	7.843e^-6	0.024	INTRON sli
2L	6521742	2L_6521742_SNP [dm3] 2L_6521742_SNP [dm6]	C	G	7.890e^-6	0.024	INTRON CG31637
2L	7380080	2L_7380080_SNP [dm3] 2L_7380080_SNP [dm6]	G	A	7.925e^-6	0.024	SYNONYMOUS_CODING ninaC
2L	7380122	2L_7380122_SNP [dm3] 2L_7380122_SNP [dm6]	C	T	7.925e^-6	0.024	SYNONYMOUS_CODING ninaC
2L	7380164	2L_7380164_SNP [dm3] 2L_7380164_SNP [dm6]	G	A	7.925e^-6	0.024	SYNONYMOUS_CODING ninaC
3L	14125562	3L_14125562_INS [dm3] 3L_14132462_INS [dm6]	A	AA	7.968e^-6	0.025	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	4796208	2L_4796208_SNP [dm3] 2L_4796208_SNP [dm6]	C	A	7.984e^-6	0.025	SYNONYMOUS_CODING CG3294 UTR_3_PRIME CG3294 DOWNSTREAM Clect27
2L	4847910	2L_4847910_SNP [dm3] 2L_4847910_SNP [dm6]	C	A	8.020e^-6	0.025	NON_SYNONYMOUS_CODING CG11927 UPSTREAM mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Ubx
2R	6734530	2R_6734530_INS [dm3] 2R_10847025_INS [dm6]	G	GG	8.053e^-6	0.025	INTRON CG30015
2L	14313089	2L_14313089_SNP [dm3] 2L_14313089_SNP [dm6]	A	T	8.067e^-6	0.025	INTRON wb
X	1695231	X_1695231_SNP [dm3] X_1801198_SNP [dm6]	A	T	8.106e^-6	0.025	INTRON CG42666
X	1695281	X_1695281_DEL [dm3] X_1801248_DEL [dm6]	CGTTGGT	C	8.106e^-6	0.025	INTRON CG42666
X	1695289	X_1695289_INS [dm3] X_1801256_INS [dm6]	G	GACCAACGC	8.106e^-6	0.025	INTRON CG42666
X	1695521	X_1695521_SNP [dm3] X_1801488_SNP [dm6]	A	C	8.106e^-6	0.025	INTRON CG42666
X	1787024	X_1787024_SNP [dm3] X_1892991_SNP [dm6]	T	C	8.106e^-6	0.025	INTRON arm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	27316548	3R_27316548_SNP [dm3] 3R_31490826_SNP [dm6]	C	A	8.108e^-6	0.025	UPSTREAM CR45572 INTERGENIC
3R	19085958	3R_19085958_SNP [dm3] 3R_23260236_SNP [dm6]	G	A	8.170e^-6	0.025	SYNONYMOUS_CODING CG13827 DOWNSTREAM orb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14753291	2L_14753291_SNP [dm3] 2L_14753291_SNP [dm6]	G	T	8.257e^-6	0.025	INTERGENIC
2R	17067938	2R_17067938_INS [dm3] 2R_21180433_INS [dm6]	G	GG	8.304e^-6	0.025	UPSTREAM tRNA:CR33539 INTRON Pu	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12658049	2L_12658049_SNP [dm3] 2L_12658049_SNP [dm6]	G	A	8.356e^-6	0.025	UTR_5_PRIME pdm2	TF binding site mE1_TFBS_Trl
2L	14394964	2L_14394964_SNP [dm3] 2L_14394964_SNP [dm6]	C	T	8.362e^-6	0.025	INTRON elB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	8172666	X_8172666_SNP [dm3] X_8278633_SNP [dm6]	A	G	8.431e^-6	0.025	UTR_3_PRIME nAChRalpha3
X	4417872	X_4417872_DEL [dm3] X_4523839_DEL [dm6]	TA	T	8.445e^-6	0.025	INTRON CR32773
2L	4963949	2L_4963949_SNP [dm3] 2L_4963949_SNP [dm6]	A	G	8.462e^-6	0.025	SYNONYMOUS_CODING CG34124 DOWNSTREAM CR43824	TF binding site mE1_TFBS_cad
2L	4963955	2L_4963955_SNP [dm3] 2L_4963955_SNP [dm6]	C	T	8.462e^-6	0.025	SYNONYMOUS_CODING CG34124 DOWNSTREAM CR43824	TF binding site mE1_TFBS_cad
3L	2643128	3L_2643128_SNP [dm3] 3L_2643128_SNP [dm6]	A	G	8.463e^-6	0.025	INTRON CG14949
3L	2643135	3L_2643135_INS [dm3] 3L_2643135_INS [dm6]	T	TATCTCATAAAGT...	8.463e^-6	0.025	INTRON CG14949
3L	4407558	3L_4407558_SNP [dm3] 3L_4407558_SNP [dm6]	C	A	8.478e^-6	0.025	INTRON DOR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	14301954	2L_14301954_SNP [dm3] 2L_14301954_SNP [dm6]	G	T	8.537e^-6	0.025	INTRON wb
2R	1626590	2R_1626590_SNP [dm3] 2R_5739085_SNP [dm6]	C	A	8.605e^-6	0.025	INTERGENIC	regulatory region REDfly_CRMs
3L	9994751	3L_9994751_SNP [dm3] 3L_10001651_SNP [dm6]	A	C	8.658e^-6	0.026	INTRON dpr6
3R	19074032	3R_19074032_SNP [dm3] 3R_23248310_SNP [dm6]	C	T	8.730e^-6	0.026	INTRON CG4467	TF binding site mE1_TFBS_Trl
3R	13101379	3R_13101379_SNP [dm3] 3R_17275657_SNP [dm6]	T	C	8.830e^-6	0.026	INTERGENIC
3R	23605840	3R_23605840_SNP [dm3] 3R_27780118_SNP [dm6]	T	G	8.863e^-6	0.026	INTRON CG34353
3L	1228755	3L_1228755_SNP [dm3] 3L_1228755_SNP [dm6]	G	C	8.901e^-6	0.026	DOWNSTREAM LysS INTRON mwh
3L	1228762	3L_1228762_SNP [dm3] 3L_1228762_SNP [dm6]	G	T	8.901e^-6	0.026	DOWNSTREAM LysS INTRON mwh
2L	8005719	2L_8005719_DEL [dm3] 2L_8005719_DEL [dm6]	AG	A	8.913e^-6	0.026	INTRON Spn28Dc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17013521	3R_17013521_SNP [dm3] 3R_21187799_SNP [dm6]	A	G	8.981e^-6	0.026	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_Trl
X	16824331	X_16824331_SNP [dm3] X_16930298_SNP [dm6]	C	A	8.991e^-6	0.026	INTRON CG4928
2L	19892776	2L_19892776_SNP [dm3] 2L_19892776_SNP [dm6]	C	G	9.052e^-6	0.026	UPSTREAM CG10481 INTRON sick	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12288634	X_12288634_SNP [dm3] X_12394601_SNP [dm6]	A	C	9.092e^-6	0.026	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1288445	2L_1288445_SNP [dm3] 2L_1288445_SNP [dm6]	A	T	9.125e^-6	0.026	INTRON robo3
3R	16314658	3R_16314658_INS [dm3] 3R_20488936_INS [dm6]	T	TTACC	9.143e^-6	0.026	INTERGENIC
2R	13912304	2R_13912304_SNP [dm3] 2R_18024799_SNP [dm6]	A	G	9.144e^-6	0.026	INTERGENIC
3L	11452661	3L_11452661_SNP [dm3] 3L_11459561_SNP [dm6]	T	A	9.145e^-6	0.026	UTR_3_PRIME CG7551	TF binding site mE1_TFBS_inv
3L	13124654	3L_13124654_SNP [dm3] 3L_13131554_SNP [dm6]	A	T	9.158e^-6	0.026	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	10255995	2R_10255995_SNP [dm3] 2R_14368490_SNP [dm6]	A	T	9.178e^-6	0.026	NON_SYNONYMOUS_CODING CG34443 UPSTREAM CG34444 DOWNSTREAM CG34442
3L	15267637	3L_15267637_SNP [dm3] 3L_15274537_SNP [dm6]	G	C	9.219e^-6	0.026	INTERGENIC
3L	1201680	3L_1201680_SNP [dm3] 3L_1201680_SNP [dm6]	C	A	9.227e^-6	0.026	DOWNSTREAM CG32335 INTRON mwh	TF binding site mE1_TFBS_chinmo
3R	15611942	3R_15611942_SNP [dm3] 3R_19786220_SNP [dm6]	C	A	9.338e^-6	0.027	DOWNSTREAM CG11453 INTERGENIC
3R	15611972	3R_15611972_SNP [dm3] 3R_19786250_SNP [dm6]	T	A	9.338e^-6	0.027	DOWNSTREAM CG11453 INTERGENIC
3L	11663153	3L_11663153_INS [dm3] 3L_11670053_INS [dm6]	C	CAACACCACCCCCCATC...	9.351e^-6	0.027	INTRON CG32085
2R	14982949	2R_14982949_SNP [dm3] 2R_19095444_SNP [dm6]	G	A	9.481e^-6	0.027	INTRON 5-HT1A & 1 other
2L	8027987	2L_8027987_SNP [dm3] 2L_8027987_SNP [dm6]	C	T	9.512e^-6	0.027	INTRON CG7367
2R	5504195	2R_5504195_DEL [dm3] 2R_9616690_DEL [dm6]	TTTGTGTTTTGTGTAATATA...	T	9.524e^-6	0.027	INTRON Mmp2
2R	16342723	2R_16342723_SNP [dm3] 2R_20455218_SNP [dm6]	G	A	9.531e^-6	0.027	INTRON CG12484
X	1804176	X_1804176_SNP [dm3] X_1910143_SNP [dm6]	C	T	9.613e^-6	0.027	INTRON mip130 & 1 other	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	15901520	2R_15901520_SNP [dm3] 2R_20014015_SNP [dm6]	G	A	9.692e^-6	0.027	UPSTREAM CR44629 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11269639	2L_11269639_SNP [dm3] 2L_11269639_SNP [dm6]	C	T	9.716e^-6	0.027	UPSTREAM cana & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26691979	3R_26691979_SNP [dm3] 3R_30866257_SNP [dm6]	G	A	9.732e^-6	0.027	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	15267175	3L_15267175_SNP [dm3] 3L_15274075_SNP [dm6]	G	C	9.775e^-6	0.027	INTERGENIC
2L	6356376	2L_6356376_SNP [dm3] 2L_6356376_SNP [dm6]	C	G	9.779e^-6	0.027	NON_SYNONYMOUS_CODING ppk14 DOWNSTREAM CG9500	TF binding site mE1_TFBS_bab1 mE1_TFBS_chinmo
2L	15063322	2L_15063322_SNP [dm3] 2L_15063322_SNP [dm6]	C	A	9.784e^-6	0.027	UTR_3_PRIME vig DOWNSTREAM vig INTRON vas
X	8063641	X_8063641_SNP [dm3] X_8169608_SNP [dm6]	T	G	9.807e^-6	0.028	NON_SYNONYMOUS_CODING CG2278 DOWNSTREAM slpr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15892467	2R_15892467_SNP [dm3] 2R_20004962_SNP [dm6]	A	T	9.841e^-6	0.028	NON_SYNONYMOUS_CODING CG16898
2R	15892469	2R_15892469_INS [dm3] 2R_20004964_INS [dm6]	TGG	ACATT	9.841e^-6	0.028
2L	2842671	2L_2842671_SNP [dm3] 2L_2842671_SNP [dm6]	G	T	9.909e^-6	0.028	NON_SYNONYMOUS_CODING CG18558 DOWNSTREAM CG2975
3L	11725808	3L_11725808_SNP [dm3] 3L_11732708_SNP [dm6]	A	G	9.911e^-6	0.028	NON_SYNONYMOUS_CODING CG32087 DOWNSTREAM CG32088 & 1 other	TF binding site mE1_TFBS_cad
2L	15369751	2L_15369751_SNP [dm3] 2L_15369751_SNP [dm6]	T	A	9.916e^-6	0.028	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	19890048	2R_19890048_SNP [dm3] 2R_24002525_SNP [dm6]	T	C	9.932e^-6	0.028	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10636984	3L_10636984_SNP [dm3] 3L_10643884_SNP [dm6]	G	A	9.980e^-6	0.028	SYNONYMOUS_CODING CG14153 DOWNSTREAM CG14154 INTRON CG32066
3L	10636991	3L_10636991_SNP [dm3] 3L_10643891_SNP [dm6]	G	T	9.980e^-6	0.028	NON_SYNONYMOUS_CODING CG14153 DOWNSTREAM CG14154 INTRON CG32066
3R	15618174	3R_15618174_SNP [dm3] 3R_19792452_SNP [dm6]	C	T	1.011e^-5	0.028	INTERGENIC
3L	9191221	3L_9191221_SNP [dm3] 3L_9198121_SNP [dm6]	T	C	1.023e^-5	0.028	INTERGENIC
2R	15123375	2R_15123375_SNP [dm3] 2R_19235870_SNP [dm6]	T	C	1.025e^-5	0.028	SYNONYMOUS_CODING cora	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13077630	2L_13077630_SNP [dm3] 2L_13077630_SNP [dm6]	T	C	1.025e^-5	0.028	INTERGENIC
2L	20001777	2L_20001777_SNP [dm3] 2L_20001777_SNP [dm6]	T	C	1.031e^-5	0.028	INTRON CG43861
2R	3984221	2R_3984221_SNP [dm3] 2R_8096716_SNP [dm6]	G	A	1.039e^-5	0.029	NON_SYNONYMOUS_CODING CG8713 DOWNSTREAM CG8712
2R	4656348	2R_4656348_SNP [dm3] 2R_8768843_SNP [dm6]	A	C	1.039e^-5	0.029	UPSTREAM CR44278 INTERGENIC
2L	9163970	2L_9163970_SNP [dm3] 2L_9163970_SNP [dm6]	C	T	1.042e^-5	0.029	UPSTREAM CG13108 DOWNSTREAM CG32982 INTERGENIC	TF binding site mE1_TFBS_cad
2R	1121478	2R_1121478_SNP [dm3] 2R_5233973_SNP [dm6]	C	T	1.052e^-5	0.029	INTRON Nipped-A	transposable element FlyBase
2R	1699088	2R_1699088_SNP [dm3] 2R_5811583_SNP [dm6]	T	C	1.052e^-5	0.029	INTRON dpr12	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6804626	2L_6804626_SNP [dm3] 2L_6804626_SNP [dm6]	G	T	1.055e^-5	0.029	UTR_3_PRIME CG17375 DOWNSTREAM CG11236	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	10009310	X_10009310_SNP [dm3] X_10115277_SNP [dm6]	G	T	1.057e^-5	0.029	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	12182367	2L_12182367_SNP [dm3] 2L_12182367_SNP [dm6]	T	C	1.057e^-5	0.029	INTRON aret
2L	10796739	2L_10796739_SNP [dm3] 2L_10796739_SNP [dm6]	G	C	1.059e^-5	0.029	INTRON CG31869
2L	6422501	2L_6422501_SNP [dm3] 2L_6422501_SNP [dm6]	A	T	1.060e^-5	0.029	SYNONYMOUS_CODING Tig
2L	4848178	2L_4848178_SNP [dm3] 2L_4848178_SNP [dm6]	T	G	1.060e^-5	0.029	SYNONYMOUS_CODING CG11927 UPSTREAM mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_sens
X	14299301	X_14299301_INS [dm3] X_14405268_INS [dm6]	A	AGAA	1.067e^-5	0.029	INTRON dpr8
3L	16636354	3L_16636354_SNP [dm3] 3L_16643254_SNP [dm6]	C	T	1.072e^-5	0.029	INTRON Abl
3R	20392881	3R_20392881_SNP [dm3] 3R_24567159_SNP [dm6]	A	G	1.079e^-5	0.029	INTRON CG13624	TF binding site mE1_TFBS_cnc
X	1483685	X_1483685_SNP [dm3] X_1589652_SNP [dm6]	G	A	1.079e^-5	0.029	INTRON br & 1 other
X	1530790	X_1530790_SNP [dm3] X_1636757_SNP [dm6]	G	T	1.079e^-5	0.029	SYNONYMOUS_CODING br INTRON Mur2B	TF binding site mE1_TFBS_chinmo
2L	5855701	2L_5855701_SNP [dm3] 2L_5855701_SNP [dm6]	C	G	1.080e^-5	0.029	INTRON TrissinR
3R	10818610	3R_10818610_SNP [dm3] 3R_14992888_SNP [dm6]	G	A	1.081e^-5	0.029	INTERGENIC
3R	10818624	3R_10818624_SNP [dm3] 3R_14992902_SNP [dm6]	C	A	1.081e^-5	0.029	INTERGENIC
3R	10344753	3R_10344753_SNP [dm3] 3R_14519031_SNP [dm6]	G	A	1.082e^-5	0.029	INTRON Pde6
3R	10344812	3R_10344812_SNP [dm3] 3R_14519090_SNP [dm6]	T	G	1.082e^-5	0.029	INTRON Pde6
3R	10344834	3R_10344834_SNP [dm3] 3R_14519112_SNP [dm6]	G	A	1.082e^-5	0.029	INTRON Pde6
3R	10344840	3R_10344840_SNP [dm3] 3R_14519118_SNP [dm6]	T	C	1.082e^-5	0.029	INTRON Pde6
3R	10344874	3R_10344874_SNP [dm3] 3R_14519152_SNP [dm6]	A	C	1.082e^-5	0.029	INTRON Pde6
3R	10344876	3R_10344876_DEL [dm3] 3R_14519154_DEL [dm6]	AGT	A	1.082e^-5	0.029	INTRON Pde6
3R	10344879	3R_10344879_SNP [dm3] 3R_14519157_SNP [dm6]	A	C	1.082e^-5	0.029	INTRON Pde6
3R	10344884	3R_10344884_INS [dm3] 3R_14519162_INS [dm6]	T	TA	1.082e^-5	0.029	INTRON Pde6
3R	10344942	3R_10344942_SNP [dm3] 3R_14519220_SNP [dm6]	T	A	1.082e^-5	0.029	INTRON Pde6
3R	10344968	3R_10344968_SNP [dm3] 3R_14519246_SNP [dm6]	C	T	1.082e^-5	0.029	INTRON Pde6
X	563221	X_563221_DEL [dm3] X_669188_DEL [dm6]	AG	A	1.089e^-5	0.029	INTERGENIC
X	12288623	X_12288623_SNP [dm3] X_12394590_SNP [dm6]	G	T	1.091e^-5	0.029	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12288625	X_12288625_SNP [dm3] X_12394592_SNP [dm6]	A	T	1.091e^-5	0.029	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14982953	2R_14982953_SNP [dm3] 2R_19095448_SNP [dm6]	G	T	1.098e^-5	0.029	INTRON 5-HT1A & 1 other
2L	12634777	2L_12634777_SNP [dm3] 2L_12634777_SNP [dm6]	A	T	1.099e^-5	0.029	INTRON Ref2
2L	15109069	2L_15109069_SNP [dm3] 2L_15109069_SNP [dm6]	A	G	1.120e^-5	0.029	UPSTREAM CG15269 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18020070	2L_18020070_SNP [dm3] 2L_18020070_SNP [dm6]	A	T	1.120e^-5	0.029	INTRON rdo
2L	18023673	2L_18023673_SNP [dm3] 2L_18023673_SNP [dm6]	C	A	1.120e^-5	0.029	INTRON rdo
3L	7093091	3L_7093091_SNP [dm3] 3L_7099991_SNP [dm6]	G	C	1.120e^-5	0.029	INTRON form3
X	16258765	X_16258765_SNP [dm3] X_16364732_SNP [dm6]	G	A	1.120e^-5	0.029	INTRON nonA
2L	8046788	2L_8046788_SNP [dm3] 2L_8046788_SNP [dm6]	T	G	1.121e^-5	0.029	INTRON CG7466
2R	15898543	2R_15898543_SNP [dm3] 2R_20011038_SNP [dm6]	A	G	1.121e^-5	0.029	INTERGENIC
X	14383290	X_14383290_SNP [dm3] X_14489257_SNP [dm6]	C	G	1.140e^-5	0.029	INTERGENIC
3R	10816527	3R_10816527_SNP [dm3] 3R_14990805_SNP [dm6]	A	T	1.141e^-5	0.029	INTERGENIC
3R	8934362	3R_8934362_SNP [dm3] 3R_13108640_SNP [dm6]	T	A	1.142e^-5	0.029	INTRON timeout
3R	20393835	3R_20393835_SNP [dm3] 3R_24568113_SNP [dm6]	A	T	1.149e^-5	0.03	INTRON CG13624	TF binding site BDTNP1_TFBS_da
2L	15051771	2L_15051771_SNP [dm3] 2L_15051771_SNP [dm6]	G	T	1.152e^-5	0.03	INTRON ck	regulatory region REDfly_CRMs
3R	9755181	3R_9755181_SNP [dm3] 3R_13929459_SNP [dm6]	C	T	1.153e^-5	0.03	INTERGENIC
X	11823015	X_11823015_SNP [dm3] X_11928982_SNP [dm6]	G	A	1.162e^-5	0.03	SYNONYMOUS_CODING CG10362
X	18145506	X_18145506_SNP [dm3] X_18251473_SNP [dm6]	A	G	1.162e^-5	0.03	INTERGENIC
X	18145522	X_18145522_INS [dm3] X_18251489_INS [dm6]	G	GG	1.162e^-5	0.03	INTERGENIC
2L	2462843	2L_2462843_SNP [dm3] 2L_2462843_SNP [dm6]	G	A	1.164e^-5	0.03	DOWNSTREAM tRNA:Y1:22Fa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	21060598	X_21060598_SNP [dm3] X_21189571_SNP [dm6]	T	A	1.166e^-5	0.03	DOWNSTREAM CR45506 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	21060774	X_21060774_SNP [dm3] X_21189747_SNP [dm6]	T	C	1.166e^-5	0.03	DOWNSTREAM CR45506 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	15051727	2L_15051727_SNP [dm3] 2L_15051727_SNP [dm6]	A	G	1.170e^-5	0.03	SPLICE_SITE_REGION ck SYNONYMOUS_CODING ck	regulatory region REDfly_CRMs
X	10964680	X_10964680_SNP [dm3] X_11070647_SNP [dm6]	C	A	1.180e^-5	0.03	DOWNSTREAM sev INTERGENIC
X	1912904	X_1912904_SNP [dm3] X_2018871_SNP [dm6]	C	T	1.187e^-5	0.03	SYNONYMOUS_CODING east
2R	16908009	2R_16908009_DEL [dm3] 2R_21020504_DEL [dm6]	AAA	A	1.190e^-5	0.03	INTRON RIC-3
2R	16908016	2R_16908016_SNP [dm3] 2R_21020511_SNP [dm6]	T	C	1.190e^-5	0.03	INTRON RIC-3
3L	1613275	3L_1613275_SNP [dm3] 3L_1613275_SNP [dm6]	C	A	1.195e^-5	0.03	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_cad
3R	26692021	3R_26692021_INS [dm3] 3R_30866299_INS [dm6]	A	ATA	1.199e^-5	0.03	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	11279957	2L_11279957_SNP [dm3] 2L_11279957_SNP [dm6]	C	A	1.201e^-5	0.03	UTR_3_PRIME CG33695 UPSTREAM Ppt2 DOWNSTREAM CR44182 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10962530	2R_10962530_SNP [dm3] 2R_15075025_SNP [dm6]	G	A	1.203e^-5	0.03	INTERGENIC
2R	10962540	2R_10962540_SNP [dm3] 2R_15075035_SNP [dm6]	C	A	1.203e^-5	0.03	INTERGENIC
3R	15638456	3R_15638456_INS [dm3] 3R_19812734_INS [dm6]	T	ATG	1.208e^-5	0.03	INTRON bnl
X	3725181	X_3725181_INS [dm3] X_3831148_INS [dm6]	G	GTGAGAGG	1.218e^-5	0.031	UTR_3_PRIME CG2901 INTRON ec	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19996156	2L_19996156_SNP [dm3] 2L_19996156_SNP [dm6]	G	A	1.219e^-5	0.031	INTRON CG43861
3L	894111	3L_894111_SNP [dm3] 3L_894111_SNP [dm6]	A	T	1.221e^-5	0.031	UTR_3_PRIME CG32479 DOWNSTREAM CG32479
3L	1202304	3L_1202304_SNP [dm3] 3L_1202304_SNP [dm6]	T	C	1.221e^-5	0.031	SYNONYMOUS_CODING CG32335 INTRON mwh	TF binding site mE1_TFBS_chinmo
X	2391840	X_2391840_SNP [dm3] X_2497807_SNP [dm6]	A	G	1.233e^-5	0.031	INTRON trol
3R	19558992	3R_19558992_SNP [dm3] 3R_23733270_SNP [dm6]	G	A	1.237e^-5	0.031	START_GAINED Rpn9 UTR_5_PRIME Rpn9 UPSTREAM Hmgcr & 1 other	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2R	1264972	2R_1264972_SNP [dm3] 2R_5377467_SNP [dm6]	T	C	1.238e^-5	0.031	INTERGENIC	transposable element FlyBase
2L	4796190	2L_4796190_SNP [dm3] 2L_4796190_SNP [dm6]	C	T	1.239e^-5	0.031	SYNONYMOUS_CODING CG3294 UTR_3_PRIME CG3294 DOWNSTREAM Clect27
3L	7106388	3L_7106388_INS [dm3] 3L_7113288_INS [dm6]	C	CAA	1.242e^-5	0.031	INTRON form3
3R	12492065	3R_12492065_SNP [dm3] 3R_16666343_SNP [dm6]	C	A	1.247e^-5	0.031	INTRON Ubx
2R	3984170	2R_3984170_SNP [dm3] 2R_8096665_SNP [dm6]	C	A	1.248e^-5	0.031	DOWNSTREAM CG8712 INTRON CG8713
2L	14269967	2L_14269967_SNP [dm3] 2L_14269967_SNP [dm6]	G	A	1.249e^-5	0.031	INTRON wb	TF binding site mE1_TFBS_sens
3L	15511343	3L_15511343_DEL [dm3] 3L_15518243_DEL [dm6]	TTTAT	T	1.264e^-5	0.031	INTRON mex1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10838908	2R_10838908_SNP [dm3] 2R_14951403_SNP [dm6]	T	A	1.266e^-5	0.031	UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	9975559	2R_9975559_SNP [dm3] 2R_14088054_SNP [dm6]	T	A	1.269e^-5	0.031	INTRON Prosap
2L	16790169	2L_16790169_SNP [dm3] 2L_16790169_SNP [dm6]	A	T	1.271e^-5	0.031	INTRON Cyt-b5-r
2R	16686851	2R_16686851_SNP [dm3] 2R_20799346_SNP [dm6]	G	C	1.276e^-5	0.031	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18452734	3L_18452734_SNP [dm3] 3L_18459634_SNP [dm6]	C	T	1.281e^-5	0.031	NON_SYNONYMOUS_CODING CG32196	TF binding site mE1_TFBS_bab1
3R	13313442	3R_13313442_DEL [dm3] 3R_17487720_DEL [dm6]	AGTGCTTGCTT...	A	1.281e^-5	0.031	INTRON Dscam3
3R	13313458	3R_13313458_SNP [dm3] 3R_17487736_SNP [dm6]	T	A	1.281e^-5	0.031	INTRON Dscam3
X	14224395	X_14224395_SNP [dm3] X_14330362_SNP [dm6]	G	C	1.291e^-5	0.031	INTRON dpr8
3R	9683232	3R_9683232_SNP [dm3] 3R_13857510_SNP [dm6]	T	A	1.296e^-5	0.031	INTERGENIC
2L	16869947	2L_16869947_SNP [dm3] 2L_16869947_SNP [dm6]	G	C	1.299e^-5	0.031	UPSTREAM CR31781 EXON CR31781	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12352941	2L_12352941_SNP [dm3] 2L_12352941_SNP [dm6]	G	T	1.300e^-5	0.031	INTRON bru-2	TF binding site BDTNP1_TFBS_dl
X	14241953	X_14241953_SNP [dm3] X_14347920_SNP [dm6]	C	T	1.308e^-5	0.031	INTRON dpr8
X	14241960	X_14241960_SNP [dm3] X_14347927_SNP [dm6]	A	T	1.308e^-5	0.031	INTRON dpr8
X	14241962	X_14241962_INS [dm3] X_14347929_INS [dm6]	G	GCAT	1.308e^-5	0.031	INTRON dpr8
X	14241965	X_14241965_SNP [dm3] X_14347932_SNP [dm6]	T	A	1.308e^-5	0.031	INTRON dpr8
X	14241967	X_14241967_SNP [dm3] X_14347934_SNP [dm6]	C	T	1.308e^-5	0.031	INTRON dpr8
X	14241968	X_14241968_SNP [dm3] X_14347935_SNP [dm6]	A	G	1.308e^-5	0.031	INTRON dpr8
X	14241970	X_14241970_SNP [dm3] X_14347937_SNP [dm6]	G	C	1.308e^-5	0.031	INTRON dpr8
X	14241973	X_14241973_INS [dm3] X_14347940_INS [dm6]	A	TAATAC	1.308e^-5	0.031	INTRON dpr8
X	14241980	X_14241980_SNP [dm3] X_14347947_SNP [dm6]	G	A	1.308e^-5	0.031	INTRON dpr8
2L	11883098	2L_11883098_SNP [dm3] 2L_11883098_SNP [dm6]	C	T	1.309e^-5	0.031	INTRON Pde1c
2L	19890209	2L_19890209_SNP [dm3] 2L_19890209_SNP [dm6]	G	T	1.311e^-5	0.031	UTR_3_PRIME CG10481 INTRON sick
3R	19251502	3R_19251502_SNP [dm3] 3R_23425780_SNP [dm6]	A	G	1.313e^-5	0.031	NON_SYNONYMOUS_CODING CG43694 INTRON CG4374
3R	19859497	3R_19859497_SNP [dm3] 3R_24033775_SNP [dm6]	A	G	1.315e^-5	0.031	SYNONYMOUS_CODING Ime4 DOWNSTREAM Miro	TF binding site mE1_TFBS_sens
2L	10646849	2L_10646849_SNP [dm3] 2L_10646849_SNP [dm6]	G	A	1.317e^-5	0.031	SYNONYMOUS_CODING CG17097 DOWNSTREAM CG18284	TF binding site mE1_TFBS_inv mE1_TFBS_run
2R	1598491	2R_1598491_DEL [dm3] 2R_5710986_DEL [dm6]	AACGACAAAACA...	A	1.317e^-5	0.031	INTRON ap	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	10344909	3R_10344909_SNP [dm3] 3R_14519187_SNP [dm6]	T	G	1.318e^-5	0.031	INTRON Pde6
X	10009248	X_10009248_SNP [dm3] X_10115215_SNP [dm6]	C	G	1.318e^-5	0.031	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	11917270	3L_11917270_SNP [dm3] 3L_11924170_SNP [dm6]	C	T	1.318e^-5	0.031	SYNONYMOUS_CODING CG5718 INTRON CG44837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	17566832	3R_17566832_SNP [dm3] 3R_21741110_SNP [dm6]	G	A	1.318e^-5	0.031	INTRON CG5849
3R	18274506	3R_18274506_SNP [dm3] 3R_22448784_SNP [dm6]	G	T	1.318e^-5	0.031	INTRON CG34376	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	9777604	3R_9777604_SNP [dm3] 3R_13951882_SNP [dm6]	C	T	1.318e^-5	0.031	UPSTREAM CG9926 INTERGENIC
3R	9871071	3R_9871071_SNP [dm3] 3R_14045349_SNP [dm6]	T	A	1.318e^-5	0.031	UPSTREAM tRNA:S2b:88A INTERGENIC
3R	9872130	3R_9872130_SNP [dm3] 3R_14046408_SNP [dm6]	A	T	1.318e^-5	0.031	INTERGENIC
3R	9872318	3R_9872318_SNP [dm3] 3R_14046596_SNP [dm6]	C	T	1.318e^-5	0.031	INTERGENIC
X	16251278	X_16251278_SNP [dm3] X_16357245_SNP [dm6]	G	T	1.318e^-5	0.031	DOWNSTREAM sl INTRON U2af50	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	7791380	2L_7791380_SNP [dm3] 2L_7791380_SNP [dm6]	C	T	1.320e^-5	0.031	UTR_3_PRIME LKR UPSTREAM CG7149 DOWNSTREAM LKR
3L	18445782	3L_18445782_SNP [dm3] 3L_18452682_SNP [dm6]	T	C	1.324e^-5	0.031	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9944343	2R_9944343_SNP [dm3] 2R_14056838_SNP [dm6]	C	A	1.325e^-5	0.031	SYNONYMOUS_CODING mam INTRON mam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12008400	2R_12008400_INS [dm3] 2R_16120895_INS [dm6]	A	ATCT	1.330e^-5	0.031	INTRON Jhe	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
3R	19860679	3R_19860679_SNP [dm3] 3R_24034957_SNP [dm6]	T	G	1.332e^-5	0.031	SYNONYMOUS_CODING Miro DOWNSTREAM Ime4
2L	6418299	2L_6418299_SNP [dm3] 2L_6418299_SNP [dm6]	A	G	1.341e^-5	0.031	SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20476067	2L_20476067_SNP [dm3] 2L_20476067_SNP [dm6]	A	G	1.346e^-5	0.031	DOWNSTREAM CR43234 INTRON CR44980	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	5855703	2L_5855703_SNP [dm3] 2L_5855703_SNP [dm6]	T	C	1.349e^-5	0.031	INTRON TrissinR
2L	14132873	2L_14132873_INS [dm3] 2L_14132873_INS [dm6]	T	CAATGTC	1.351e^-5	0.031	INTERGENIC
2L	14133011	2L_14133011_SNP [dm3] 2L_14133011_SNP [dm6]	C	T	1.351e^-5	0.031	INTERGENIC
3R	19471111	3R_19471111_SNP [dm3] 3R_23645389_SNP [dm6]	G	C	1.351e^-5	0.031	INTRON CG31145	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9876842	3R_9876842_SNP [dm3] 3R_14051120_SNP [dm6]	G	A	1.351e^-5	0.031	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9650481	3R_9650481_SNP [dm3] 3R_13824759_SNP [dm6]	T	C	1.351e^-5	0.031	INTERGENIC
3L	16636557	3L_16636557_SNP [dm3] 3L_16643457_SNP [dm6]	C	A	1.359e^-5	0.031	INTRON Abl
2L	12173297	2L_12173297_SNP [dm3] 2L_12173297_SNP [dm6]	T	C	1.362e^-5	0.032	SYNONYMOUS_CODING crok UPSTREAM CG6583 DOWNSTREAM CR43356	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	1614781	2L_1614781_SNP [dm3] 2L_1614781_SNP [dm6]	G	C	1.364e^-5	0.032	UPSTREAM RFeSP INTERGENIC	TF binding site mE1_TFBS_HSA
3R	13278713	3R_13278713_SNP [dm3] 3R_17452991_SNP [dm6]	C	T	1.371e^-5	0.032	INTERGENIC
2R	13483745	2R_13483745_SNP [dm3] 2R_17596240_SNP [dm6]	A	G	1.378e^-5	0.032	SYNONYMOUS_CODING CG11423 INTRON lack
2R	1696517	2R_1696517_SNP [dm3] 2R_5809012_SNP [dm6]	T	C	1.381e^-5	0.032	INTRON dpr12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	1302722	2R_1302722_SNP [dm3] 2R_5415217_SNP [dm6]	G	T	1.381e^-5	0.032	UPSTREAM laccase2 INTRON laccase2	TF binding site mE1_TFBS_kn
3R	26728168	3R_26728168_SNP [dm3] 3R_30902446_SNP [dm6]	T	G	1.391e^-5	0.032	UPSTREAM CG33483 INTERGENIC
2L	14433943	2L_14433943_SNP [dm3] 2L_14433943_SNP [dm6]	G	T	1.401e^-5	0.032	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	14458402	2L_14458402_SNP [dm3] 2L_14458402_SNP [dm6]	G	A	1.401e^-5	0.032	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	6737534	2R_6737534_SNP [dm3] 2R_10850029_SNP [dm6]	G	A	1.405e^-5	0.032	INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12634822	2L_12634822_SNP [dm3] 2L_12634822_SNP [dm6]	A	T	1.407e^-5	0.032	INTRON Ref2
3R	25733627	3R_25733627_SNP [dm3] 3R_29907905_SNP [dm6]	C	A	1.413e^-5	0.032	UPSTREAM CG31036 INTERGENIC
2L	5235489	2L_5235489_SNP [dm3] 2L_5235489_SNP [dm6]	C	T	1.414e^-5	0.032	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8344604	X_8344604_SNP [dm3] X_8450571_SNP [dm6]	T	C	1.420e^-5	0.032	INTRON org-1
X	20107408	X_20107408_SNP [dm3] X_20236334_SNP [dm6]	T	A	1.420e^-5	0.032	UTR_5_PRIME sw UPSTREAM sw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
X	20108260	X_20108260_INS [dm3] X_20237186_INS [dm6]	G	GTACA	1.420e^-5	0.032	UPSTREAM sw INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	20108265	X_20108265_DEL [dm3] X_20237191_DEL [dm6]	TAG	T	1.420e^-5	0.032	UPSTREAM sw INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	20108269	X_20108269_SNP [dm3] X_20237195_SNP [dm6]	T	C	1.420e^-5	0.032	UPSTREAM sw INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14465231	2L_14465231_SNP [dm3] 2L_14465231_SNP [dm6]	C	A	1.422e^-5	0.032	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9457767	2R_9457767_SNP [dm3] 2R_13570262_SNP [dm6]	C	G	1.424e^-5	0.032	DOWNSTREAM CG42807 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2L	3142198	2L_3142198_SNP [dm3] 2L_3142198_SNP [dm6]	T	C	1.429e^-5	0.032	INTRON toc
2R	15235249	2R_15235249_SNP [dm3] 2R_19347744_SNP [dm6]	G	A	1.430e^-5	0.032	INTRON Rgk1
X	11004161	X_11004161_SNP [dm3] X_11110128_SNP [dm6]	C	G	1.433e^-5	0.032	NON_SYNONYMOUS_CODING Hsp60	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20004057	2L_20004057_SNP [dm3] 2L_20004057_SNP [dm6]	T	C	1.438e^-5	0.032	INTRON CG43861
2L	20004604	2L_20004604_SNP [dm3] 2L_20004604_SNP [dm6]	G	T	1.438e^-5	0.032	INTRON CG43861
3L	15222339	3L_15222339_SNP [dm3] 3L_15229239_SNP [dm6]	C	T	1.442e^-5	0.032	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26522181	3R_26522181_SNP [dm3] 3R_30696459_SNP [dm6]	A	G	1.444e^-5	0.032	UPSTREAM CG12069 INTRON Pka-C2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19999100	2L_19999100_SNP [dm3] 2L_19999100_SNP [dm6]	G	A	1.446e^-5	0.032	INTRON CG43861
X	10009424	X_10009424_SNP [dm3] X_10115391_SNP [dm6]	A	T	1.451e^-5	0.032	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	2422544	X_2422544_SNP [dm3] X_2528511_SNP [dm6]	C	T	1.453e^-5	0.032	INTRON trol	TF binding site mE1_TFBS_chinmo
2L	13262933	2L_13262933_SNP [dm3] 2L_13262933_SNP [dm6]	G	A	1.464e^-5	0.033	INTRON CG44085
2L	11877056	2L_11877056_SNP [dm3] 2L_11877056_SNP [dm6]	A	T	1.469e^-5	0.033	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26178733	3R_26178733_SNP [dm3] 3R_30353011_SNP [dm6]	T	G	1.492e^-5	0.033	INTRON hdc
2R	18249013	2R_18249013_SNP [dm3] 2R_22361508_SNP [dm6]	A	C	1.495e^-5	0.033	INTRON Liprin-gamma
X	2482854	X_2482854_SNP [dm3] X_2588821_SNP [dm6]	T	A	1.501e^-5	0.033	UTR_5_PRIME egh DOWNSTREAM wds	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	15260295	3L_15260295_SNP [dm3] 3L_15267195_SNP [dm6]	A	G	1.513e^-5	0.034	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	3881825	2L_3881825_SNP [dm3] 2L_3881825_SNP [dm6]	G	A	1.515e^-5	0.034	INTRON capu
X	17678292	X_17678292_SNP [dm3] X_17784259_SNP [dm6]	G	A	1.520e^-5	0.034	INTERGENIC
2R	6276601	2R_6276601_INS [dm3] 2R_10389096_INS [dm6]	T	TTTTATCAT	1.528e^-5	0.034	INTRON CG42732
2R	9283776	2R_9283776_SNP [dm3] 2R_13396271_SNP [dm6]	T	C	1.530e^-5	0.034	SYNONYMOUS_CODING CG4744	TF binding site mE1_TFBS_HSA
3R	12747208	3R_12747208_SNP [dm3] 3R_16921486_SNP [dm6]	C	A	1.531e^-5	0.034	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	7380005	2L_7380005_SNP [dm3] 2L_7380005_SNP [dm6]	T	C	1.542e^-5	0.034	SYNONYMOUS_CODING ninaC
3L	18386288	3L_18386288_SNP [dm3] 3L_18393188_SNP [dm6]	G	A	1.542e^-5	0.034	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	18452766	3L_18452766_SNP [dm3] 3L_18459666_SNP [dm6]	G	A	1.551e^-5	0.034	SYNONYMOUS_CODING CG32196	TF binding site mE1_TFBS_bab1
2L	7791392	2L_7791392_SNP [dm3] 2L_7791392_SNP [dm6]	T	G	1.553e^-5	0.034	UTR_3_PRIME LKR UPSTREAM CG7149 DOWNSTREAM LKR
2R	10840136	2R_10840136_SNP [dm3] 2R_14952631_SNP [dm6]	G	A	1.553e^-5	0.034	INTRON aPKC	TF binding site mE1_TFBS_cad
2L	3881820	2L_3881820_SNP [dm3] 2L_3881820_SNP [dm6]	C	A	1.553e^-5	0.034	INTRON capu
X	17014404	X_17014404_SNP [dm3] X_17120371_SNP [dm6]	A	G	1.557e^-5	0.034	INTRON CG5004
3R	9872242	3R_9872242_SNP [dm3] 3R_14046520_SNP [dm6]	G	C	1.559e^-5	0.034	INTERGENIC
2L	12185743	2L_12185743_DEL [dm3] 2L_12185743_DEL [dm6]	AGCTATACAC	A	1.565e^-5	0.034	INTRON aret	TF binding site BDTNP1_TFBS_dl
3R	20393676	3R_20393676_SNP [dm3] 3R_24567954_SNP [dm6]	A	G	1.567e^-5	0.034	INTRON CG13624
X	15467837	X_15467837_SNP [dm3] X_15573804_SNP [dm6]	C	A	1.567e^-5	0.034	NON_SYNONYMOUS_CODING CG9213	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16571211	2L_16571211_SNP [dm3] 2L_16571211_SNP [dm6]	T	A	1.570e^-5	0.034	INTRON CG42389
X	14241937	X_14241937_SNP [dm3] X_14347904_SNP [dm6]	T	A	1.570e^-5	0.034	INTRON dpr8
X	14241958	X_14241958_SNP [dm3] X_14347925_SNP [dm6]	A	G	1.570e^-5	0.034	INTRON dpr8
2L	18507658	2L_18507658_DEL [dm3] 2L_18507658_DEL [dm6]	AGAGT	A	1.573e^-5	0.034	INTERGENIC
2L	15369692	2L_15369692_SNP [dm3] 2L_15369692_SNP [dm6]	A	C	1.574e^-5	0.034	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	14053747	3R_14053747_SNP [dm3] 3R_18228025_SNP [dm6]	C	T	1.583e^-5	0.034	SYNONYMOUS_CODING Mdh2	TF binding site mE1_TFBS_HSA
2L	2631630	2L_2631630_INS [dm3] 2L_2631630_INS [dm6]	G	GGAGAGGACGCGGGCGAGG...	1.584e^-5	0.034	INTERGENIC
3L	10341672	3L_10341672_SNP [dm3] 3L_10348572_SNP [dm6]	T	A	1.584e^-5	0.034	INTRON CR44327
2L	15480553	2L_15480553_SNP [dm3] 2L_15480553_SNP [dm6]	C	G	1.590e^-5	0.034	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	5013724	2R_5013724_SNP [dm3] 2R_9126219_SNP [dm6]	A	G	1.594e^-5	0.034	SPLICE_SITE_REGION CG18659 INTRON CG18659
2R	5013796	2R_5013796_SNP [dm3] 2R_9126291_SNP [dm6]	A	G	1.594e^-5	0.034	INTRON CG18659
3R	12956387	3R_12956387_SNP [dm3] 3R_17130665_SNP [dm6]	T	G	1.598e^-5	0.034	UPSTREAM CG17475 DOWNSTREAM CG4053 INTERGENIC
3R	9888091	3R_9888091_SNP [dm3] 3R_14062369_SNP [dm6]	T	A	1.598e^-5	0.034	INTRON foxo	TF binding site BDTNP1_TFBS_twi
2L	3881830	2L_3881830_SNP [dm3] 2L_3881830_SNP [dm6]	G	A	1.606e^-5	0.034	INTRON capu
2L	7863445	2L_7863445_SNP [dm3] 2L_7863445_SNP [dm6]	C	G	1.608e^-5	0.034	INTERGENIC
2R	16989125	2R_16989125_SNP [dm3] 2R_21101620_SNP [dm6]	G	A	1.614e^-5	0.034	UPSTREAM ktub DOWNSTREAM CG34396 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	15480197	2L_15480197_SNP [dm3] 2L_15480197_SNP [dm6]	G	C	1.632e^-5	0.035	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	15480203	2L_15480203_SNP [dm3] 2L_15480203_SNP [dm6]	A	C	1.632e^-5	0.035	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	10654686	2L_10654686_SNP [dm3] 2L_10654686_SNP [dm6]	C	G	1.634e^-5	0.035	DOWNSTREAM CG17098 INTERGENIC
3L	16636608	3L_16636608_SNP [dm3] 3L_16643508_SNP [dm6]	G	A	1.634e^-5	0.035	INTRON Abl
3L	15262679	3L_15262679_SNP [dm3] 3L_15269579_SNP [dm6]	G	A	1.643e^-5	0.035	INTERGENIC
2L	14433944	2L_14433944_SNP [dm3] 2L_14433944_SNP [dm6]	G	A	1.652e^-5	0.035	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	4796257	2L_4796257_SNP [dm3] 2L_4796257_SNP [dm6]	A	G	1.655e^-5	0.035	DOWNSTREAM Clect27 INTRON CG3294
2L	4796269	2L_4796269_SNP [dm3] 2L_4796269_SNP [dm6]	C	A	1.655e^-5	0.035	DOWNSTREAM Clect27 INTRON CG3294
3L	13776753	3L_13776753_SNP [dm3] 3L_13783653_SNP [dm6]	A	G	1.660e^-5	0.035	INTRON bru-3
2L	9645469	2L_9645469_SNP [dm3] 2L_9645469_SNP [dm6]	G	C	1.661e^-5	0.035	SYNONYMOUS_CODING Apoltp
2L	9645535	2L_9645535_SNP [dm3] 2L_9645535_SNP [dm6]	T	A	1.661e^-5	0.035	SYNONYMOUS_CODING Apoltp
2L	16870396	2L_16870396_SNP [dm3] 2L_16870396_SNP [dm6]	C	T	1.667e^-5	0.035	UPSTREAM CR31781 EXON CR31781	TF binding site mE1_TFBS_cad
3L	6816273	3L_6816273_SNP [dm3] 3L_6823173_SNP [dm6]	A	T	1.677e^-5	0.035	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15874203	3L_15874203_SNP [dm3] 3L_15881103_SNP [dm6]	A	C	1.678e^-5	0.035	INTRON pHCl
3R	23277171	3R_23277171_SNP [dm3] 3R_27451449_SNP [dm6]	A	T	1.689e^-5	0.035	INTERGENIC
3R	10732744	3R_10732744_SNP [dm3] 3R_14907022_SNP [dm6]	T	G	1.689e^-5	0.035	INTERGENIC
3R	16952082	3R_16952082_SNP [dm3] 3R_21126360_SNP [dm6]	G	A	1.692e^-5	0.035	INTRON slmb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	19631404	2L_19631404_SNP [dm3] 2L_19631404_SNP [dm6]	T	C	1.701e^-5	0.036	INTRON Lar
2L	18606052	2L_18606052_SNP [dm3] 2L_18606052_SNP [dm6]	G	A	1.701e^-5	0.036	SYNONYMOUS_CODING CG31789 UPSTREAM CG10413 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	8759209	3R_8759209_SNP [dm3] 3R_12933487_SNP [dm6]	A	C	1.704e^-5	0.036	INTRON beat-Vb	TF binding site mE1_TFBS_sbb
3R	3183234	3R_3183234_SNP [dm3] 3R_7357512_SNP [dm6]	A	G	1.706e^-5	0.036	INTERGENIC
3L	1230217	3L_1230217_SNP [dm3] 3L_1230217_SNP [dm6]	T	G	1.711e^-5	0.036	INTRON mwh	TF binding site mE1_TFBS_chinmo
3L	1230220	3L_1230220_SNP [dm3] 3L_1230220_SNP [dm6]	C	A	1.711e^-5	0.036	INTRON mwh	TF binding site mE1_TFBS_chinmo
3L	1233379	3L_1233379_SNP [dm3] 3L_1233379_SNP [dm6]	C	T	1.711e^-5	0.036	SYNONYMOUS_CODING CG33965 UPSTREAM CG33966 DOWNSTREAM mwh	TF binding site mE1_TFBS_sens
2L	16915464	2L_16915464_SNP [dm3] 2L_16915464_SNP [dm6]	A	C	1.718e^-5	0.036	SYNONYMOUS_CODING tweek
2R	10394526	2R_10394526_SNP [dm3] 2R_14507021_SNP [dm6]	G	A	1.726e^-5	0.036	SYNONYMOUS_CODING Asx	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11881208	2R_11881208_SNP [dm3] 2R_15993703_SNP [dm6]	G	C	1.726e^-5	0.036	UTR_3_PRIME CG8320 & 1 other DOWNSTREAM ATPCL
2R	6344088	2R_6344088_SNP [dm3] 2R_10456583_SNP [dm6]	A	C	1.726e^-5	0.036	INTRON Galphao & 1 other	TF binding site mE1_TFBS_inv
2R	6346957	2R_6346957_SNP [dm3] 2R_10459452_SNP [dm6]	A	T	1.726e^-5	0.036	UPSTREAM Cyp49a1 INTRON Galphao
3R	25000762	3R_25000762_SNP [dm3] 3R_29175040_SNP [dm6]	A	T	1.737e^-5	0.036	UTR_3_PRIME CG14509 INTRON CG14509
2L	18598880	2L_18598880_SNP [dm3] 2L_18598880_SNP [dm6]	C	T	1.742e^-5	0.036	DOWNSTREAM CG10413 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	5328677	2R_5328677_SNP [dm3] 2R_9441172_SNP [dm6]	G	C	1.747e^-5	0.036	UPSTREAM ced-6 INTRON ced-6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7710319	3R_7710319_SNP [dm3] 3R_11884597_SNP [dm6]	G	A	1.750e^-5	0.036	SYNONYMOUS_CODING mthl5 INTRON CG31368
3L	9971912	3L_9971912_SNP [dm3] 3L_9978812_SNP [dm6]	T	A	1.754e^-5	0.036	INTRON dpr6
3R	14346830	3R_14346830_SNP [dm3] 3R_18521108_SNP [dm6]	G	A	1.784e^-5	0.037	INTRON fru
2L	4796244	2L_4796244_SNP [dm3] 2L_4796244_SNP [dm6]	T	C	1.785e^-5	0.037	DOWNSTREAM Clect27 INTRON CG3294
2R	14645433	2R_14645433_SNP [dm3] 2R_18757928_SNP [dm6]	A	G	1.787e^-5	0.037	NON_SYNONYMOUS_CODING Jabba SPLICE_SITE_REGION Jabba SYNONYMOUS_CODING Jabba DOWNSTREAM Cyp12b2 & 1 other INTRON Jabba
2L	11279970	2L_11279970_SNP [dm3] 2L_11279970_SNP [dm6]	C	T	1.788e^-5	0.037	UTR_3_PRIME CG33695 UPSTREAM Ppt2 DOWNSTREAM CR44182 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	16349980	3L_16349980_SNP [dm3] 3L_16356880_SNP [dm6]	C	T	1.798e^-5	0.037	UPSTREAM CG45057 INTRON CG45057
3R	15606406	3R_15606406_SNP [dm3] 3R_19780684_SNP [dm6]	T	A	1.799e^-5	0.037	UTR_3_PRIME CG11391 UPSTREAM CG11407
3R	22912264	3R_22912264_DEL [dm3] 3R_27086542_DEL [dm6]	GG	T	1.802e^-5	0.037	UTR_5_PRIME Cpr97Ea INTRON Cpr97Ea
X	10009436	X_10009436_SNP [dm3] X_10115403_SNP [dm6]	T	A	1.806e^-5	0.037	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	11241916	2R_11241916_SNP [dm3] 2R_15354411_SNP [dm6]	G	T	1.814e^-5	0.037	INTRON unc-5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2L	3881826	2L_3881826_SNP [dm3] 2L_3881826_SNP [dm6]	T	G	1.814e^-5	0.037	INTRON capu
2L	3881829	2L_3881829_SNP [dm3] 2L_3881829_SNP [dm6]	A	C	1.814e^-5	0.037	INTRON capu
2L	3881834	2L_3881834_SNP [dm3] 2L_3881834_SNP [dm6]	A	G	1.814e^-5	0.037	INTRON capu
2L	17676477	2L_17676477_DEL [dm3] 2L_17676477_DEL [dm6]	GCGACAATGC	A	1.822e^-5	0.037	INTRON CadN
2L	17677855	2L_17677855_SNP [dm3] 2L_17677855_SNP [dm6]	T	C	1.822e^-5	0.037	INTRON CadN
2L	6110403	2L_6110403_SNP [dm3] 2L_6110403_SNP [dm6]	G	C	1.822e^-5	0.037	INTRON stai	TF binding site BDTNP1_TFBS_dl
2R	3893883	2R_3893883_SNP [dm3] 2R_8006378_SNP [dm6]	T	G	1.833e^-5	0.037	NON_SYNONYMOUS_CODING Odc1 UPSTREAM Odc2	TF binding site mE1_TFBS_HSA
2R	3893915	2R_3893915_SNP [dm3] 2R_8006410_SNP [dm6]	A	C	1.833e^-5	0.037	SYNONYMOUS_CODING Odc1 UPSTREAM Odc2	TF binding site mE1_TFBS_HSA
3L	18389741	3L_18389741_SNP [dm3] 3L_18396641_SNP [dm6]	T	A	1.834e^-5	0.037	DOWNSTREAM rpr INTERGENIC
3L	18393115	3L_18393115_DEL [dm3] 3L_18400015_DEL [dm6]	CCGTACCCAC	C	1.834e^-5	0.037	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	10308160	3R_10308160_DEL [dm3] 3R_14482438_DEL [dm6]	ATAATGATAATGAAAA...	A	1.838e^-5	0.037	UPSTREAM cv-c INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10308178	3R_10308178_DEL [dm3] 3R_14482456_DEL [dm6]	TCACAAGTG	T	1.838e^-5	0.037	UPSTREAM cv-c INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10308188	3R_10308188_SNP [dm3] 3R_14482466_SNP [dm6]	G	A	1.838e^-5	0.037	UPSTREAM cv-c INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16618314	2L_16618314_SNP [dm3] 2L_16618314_SNP [dm6]	C	G	1.840e^-5	0.037	INTRON CG42389
2L	7711800	2L_7711800_SNP [dm3] 2L_7711800_SNP [dm6]	T	C	1.853e^-5	0.037	DOWNSTREAM tRNA:Y1:28C INTRON Ntl
3R	23031405	3R_23031405_DEL [dm3] 3R_27205683_DEL [dm6]	AA	A	1.859e^-5	0.037	INTERGENIC	regulatory region REDfly_CRMs
2L	21122424	2L_21122424_SNP [dm3] 2L_21122424_SNP [dm6]	C	G	1.865e^-5	0.037	DOWNSTREAM Nhe2 INTRON Nhe2
2L	20519659	2L_20519659_SNP [dm3] 2L_20519659_SNP [dm6]	C	T	1.871e^-5	0.037	INTERGENIC
2L	20522482	2L_20522482_SNP [dm3] 2L_20522482_SNP [dm6]	G	T	1.871e^-5	0.037	INTERGENIC
3R	3563642	3R_3563642_SNP [dm3] 3R_7737920_SNP [dm6]	T	A	1.878e^-5	0.037	INTERGENIC
3R	17939087	3R_17939087_SNP [dm3] 3R_22113365_SNP [dm6]	T	G	1.880e^-5	0.037	UPSTREAM Ir94a INTERGENIC
3L	9756918	3L_9756918_SNP [dm3] 3L_9763818_SNP [dm6]	A	T	1.891e^-5	0.038	UTR_5_PRIME CG8177 INTRON CG8177	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	19806634	3L_19806634_DEL [dm3] 3L_19813534_DEL [dm6]	AA	A	1.894e^-5	0.038	UPSTREAM Cyp305a1 DOWNSTREAM cyc INTERGENIC	TF binding site mE1_TFBS_cad
2L	11877064	2L_11877064_SNP [dm3] 2L_11877064_SNP [dm6]	C	A	1.895e^-5	0.038	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6118321	2L_6118321_SNP [dm3] 2L_6118321_SNP [dm6]	G	C	1.895e^-5	0.038	UPSTREAM CG31642 INTRON stai
3R	4590166	3R_4590166_SNP [dm3] 3R_8764444_SNP [dm6]	C	T	1.901e^-5	0.038	INTRON CG11768 & 1 other
3L	15044708	3L_15044708_SNP [dm3] 3L_15051608_SNP [dm6]	A	T	1.907e^-5	0.038	UPSTREAM CG12310 & 1 other DOWNSTREAM CG13461 INTRON Sytbeta
3L	15044709	3L_15044709_SNP [dm3] 3L_15051609_SNP [dm6]	G	A	1.907e^-5	0.038	UPSTREAM CG12310 & 1 other DOWNSTREAM CG13461 INTRON Sytbeta
2L	14453853	2L_14453853_SNP [dm3] 2L_14453853_SNP [dm6]	G	T	1.907e^-5	0.038	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8391217	2L_8391217_MNP [dm3] 2L_8391217_MNP [dm6]	AGA	GAT	1.908e^-5	0.038	INTRON CG42820
3R	17939322	3R_17939322_SNP [dm3] 3R_22113600_SNP [dm6]	G	T	1.911e^-5	0.038	NON_SYNONYMOUS_CODING Ir94a
2L	15480200	2L_15480200_SNP [dm3] 2L_15480200_SNP [dm6]	A	C	1.913e^-5	0.038	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	8835503	2L_8835503_SNP [dm3] 2L_8835503_SNP [dm6]	G	C	1.915e^-5	0.038	INTERGENIC
2R	21053539	2R_21053539_DEL [dm3] 2R_25166016_DEL [dm6]	TT	T	1.917e^-5	0.038	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	21060895	X_21060895_SNP [dm3] X_21189868_SNP [dm6]	A	T	1.922e^-5	0.038	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	27016214	3R_27016214_SNP [dm3] 3R_31190492_SNP [dm6]	A	T	1.935e^-5	0.038	INTRON mesh
3R	18983207	3R_18983207_DEL [dm3] 3R_23157485_DEL [dm6]	CAAC	C	1.936e^-5	0.038	DOWNSTREAM VhaAC39-2 INTRON unk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	1204466	3L_1204466_SNP [dm3] 3L_1204466_SNP [dm6]	G	A	1.938e^-5	0.038	INTRON mwh & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10308503	3R_10308503_SNP [dm3] 3R_14482781_SNP [dm6]	A	T	1.949e^-5	0.038	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	4961573	2L_4961573_INS [dm3] 2L_4961573_INS [dm6]	A	ATCA	1.978e^-5	0.039	INTRON CG34124	TF binding site mE1_TFBS_chinmo
2L	6411165	2L_6411165_SNP [dm3] 2L_6411165_SNP [dm6]	C	G	1.985e^-5	0.039	UTR_5_PRIME CG42368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6341061	2R_6341061_SNP [dm3] 2R_10453556_SNP [dm6]	C	G	1.988e^-5	0.039	INTRON Galphao & 1 other
X	8615803	X_8615803_SNP [dm3] X_8721770_SNP [dm6]	G	A	1.993e^-5	0.039	DOWNSTREAM CG1789 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9237523	2L_9237523_SNP [dm3] 2L_9237523_SNP [dm6]	C	T	1.998e^-5	0.039	UPSTREAM tRNA:CR31885 INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	16979227	2L_16979227_SNP [dm3] 2L_16979227_SNP [dm6]	A	G	2.003e^-5	0.039	INTRON beat-IIIb
3L	6567002	3L_6567002_SNP [dm3] 3L_6573902_SNP [dm6]	C	T	2.012e^-5	0.039	INTRON CG18769 & 1 other
3L	6567040	3L_6567040_SNP [dm3] 3L_6573940_SNP [dm6]	A	G	2.012e^-5	0.039	INTRON CG18769 & 1 other
3L	6567043	3L_6567043_SNP [dm3] 3L_6573943_SNP [dm6]	C	G	2.012e^-5	0.039	INTRON CG18769 & 1 other
3R	10732773	3R_10732773_INS [dm3] 3R_14907051_INS [dm6]	A	ACTGGCTGAA	2.017e^-5	0.039	INTERGENIC
2R	7704375	2R_7704375_SNP [dm3] 2R_11816870_SNP [dm6]	G	A	2.040e^-5	0.039	INTERGENIC
2R	1381457	2R_1381457_SNP [dm3] 2R_5493952_SNP [dm6]	T	G	2.054e^-5	0.04	NON_SYNONYMOUS_CODING CG30440
2L	12556303	2L_12556303_SNP [dm3] 2L_12556303_SNP [dm6]	C	A	2.058e^-5	0.04	INTERGENIC
2L	4964018	2L_4964018_SNP [dm3] 2L_4964018_SNP [dm6]	G	A	2.065e^-5	0.04	SPLICE_SITE_REGION CG34124 INTRON CG34124 EXON CR43824	TF binding site mE1_TFBS_cad
3L	15508758	3L_15508758_SNP [dm3] 3L_15515658_SNP [dm6]	G	A	2.068e^-5	0.04	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	15622664	3L_15622664_INS [dm3] 3L_15629564_INS [dm6]	A	AA	2.069e^-5	0.04	INTRON comm3
2R	5328078	2R_5328078_SNP [dm3] 2R_9440573_SNP [dm6]	T	C	2.070e^-5	0.04	INTRON ced-6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	5328169	2R_5328169_SNP [dm3] 2R_9440664_SNP [dm6]	G	A	2.070e^-5	0.04	INTRON ced-6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	1251303	2R_1251303_SNP [dm3] 2R_5363798_SNP [dm6]	G	T	2.098e^-5	0.04	UPSTREAM CG10417 INTRON CR42646	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1320649	2R_1320649_SNP [dm3] 2R_5433144_SNP [dm6]	A	T	2.098e^-5	0.04	INTRON laccase2	transposable element FlyBase
2R	15693590	2R_15693590_SNP [dm3] 2R_19806085_SNP [dm6]	T	C	2.105e^-5	0.04	INTERGENIC
2L	18610531	2L_18610531_SNP [dm3] 2L_18610531_SNP [dm6]	G	A	2.115e^-5	0.04	SYNONYMOUS_CODING Atac2 DOWNSTREAM CG10333
X	10586500	X_10586500_SNP [dm3] X_10692467_SNP [dm6]	G	A	2.130e^-5	0.041	INTRON X11Lbeta
2L	7950062	2L_7950062_INS [dm3] 2L_7950062_INS [dm6]	T	TC	2.136e^-5	0.041	INTRON Snoo
3R	20795816	3R_20795816_SNP [dm3] 3R_24970094_SNP [dm6]	G	A	2.138e^-5	0.041	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20135222	3L_20135222_SNP [dm3] 3L_20142122_SNP [dm6]	C	A	2.161e^-5	0.041	INTERGENIC
3R	9751131	3R_9751131_SNP [dm3] 3R_13925409_SNP [dm6]	T	A	2.204e^-5	0.042	INTERGENIC
2R	15123390	2R_15123390_SNP [dm3] 2R_19235885_SNP [dm6]	G	A	2.206e^-5	0.042	SYNONYMOUS_CODING cora	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16090325	2L_16090325_SNP [dm3] 2L_16090325_SNP [dm6]	T	C	2.209e^-5	0.042	INTERGENIC
3L	16214623	3L_16214623_DEL [dm3] 3L_16221523_DEL [dm6]	TTTTGAATT	T	2.213e^-5	0.042	UPSTREAM tRNA:CR32153 INTERGENIC
3R	12676676	3R_12676676_DEL [dm3] 3R_16850954_DEL [dm6]	AA	A	2.213e^-5	0.042	INTRON iab-8 EXON iab-4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	12332237	2L_12332237_SNP [dm3] 2L_12332237_SNP [dm6]	T	G	2.223e^-5	0.042	INTERGENIC
3R	16751568	3R_16751568_SNP [dm3] 3R_20925846_SNP [dm6]	T	C	2.226e^-5	0.042	INTRON CG31191 & 1 other
3R	23277314	3R_23277314_SNP [dm3] 3R_27451592_SNP [dm6]	A	C	2.234e^-5	0.042	INTERGENIC
2L	18550458	2L_18550458_SNP [dm3] 2L_18550458_SNP [dm6]	G	T	2.246e^-5	0.042	INTRON Pde11
2R	16755210	2R_16755210_SNP [dm3] 2R_20867705_SNP [dm6]	A	C	2.254e^-5	0.042	DOWNSTREAM CG15227 & 1 other INTERGENIC
X	10009427	X_10009427_INS [dm3] X_10115394_INS [dm6]	T	AGCTCAGCAAG...	2.255e^-5	0.042	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	21754440	3R_21754440_SNP [dm3] 3R_25928718_SNP [dm6]	T	C	2.257e^-5	0.042	INTRON CCAP-R
2R	4663400	2R_4663400_SNP [dm3] 2R_8775895_SNP [dm6]	C	T	2.258e^-5	0.042	INTERGENIC
2R	9961481	2R_9961481_SNP [dm3] 2R_14073976_SNP [dm6]	G	C	2.260e^-5	0.042	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	15893106	2R_15893106_SNP [dm3] 2R_20005601_SNP [dm6]	G	C	2.279e^-5	0.043	UPSTREAM CG16898 INTERGENIC
3L	14812111	3L_14812111_SNP [dm3] 3L_14819011_SNP [dm6]	G	C	2.291e^-5	0.043	INTRON CG17839
2L	2510900	2L_2510900_SNP [dm3] 2L_2510900_SNP [dm6]	C	A	2.293e^-5	0.043	INTERGENIC
2R	12647373	2R_12647373_SNP [dm3] 2R_16759868_SNP [dm6]	T	C	2.295e^-5	0.043	SYNONYMOUS_CODING unc-104
2L	2631634	2L_2631634_SNP [dm3] 2L_2631634_SNP [dm6]	C	A	2.300e^-5	0.043	INTERGENIC
2L	13141125	2L_13141125_SNP [dm3] 2L_13141125_SNP [dm6]	C	T	2.303e^-5	0.043	INTERGENIC
3R	27016279	3R_27016279_SNP [dm3] 3R_31190557_SNP [dm6]	G	T	2.319e^-5	0.043	INTRON mesh

By genomic position
Variant impact
Gene name

Microbiota_OTU173 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results