DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.100e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1865 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	8564892	2R_8564892_SNP [dm3] 2R_12677387_SNP [dm6]	G	C	1.308e^-7	0.243	UPSTREAM CG42708 INTRON CG42708
3R	16491259	3R_16491259_SNP [dm3] 3R_20665537_SNP [dm6]	G	A	4.070e^-7	0.349	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9829111	2L_9829111_SNP [dm3] 2L_9829111_SNP [dm6]	A	G	7.876e^-7	0.349	INTRON nAChRalpha6
X	11110019	X_11110019_SNP [dm3] X_11215986_SNP [dm6]	G	A	8.939e^-7	0.349	INTERGENIC
3L	10909326	3L_10909326_SNP [dm3] 3L_10916226_SNP [dm6]	A	C	1.028e^-6	0.349	INTERGENIC
3L	10909452	3L_10909452_SNP [dm3] 3L_10916352_SNP [dm6]	A	C	1.315e^-6	0.349	INTERGENIC
3L	10909465	3L_10909465_SNP [dm3] 3L_10916365_SNP [dm6]	A	G	1.315e^-6	0.349	INTERGENIC
X	11110017	X_11110017_SNP [dm3] X_11215984_SNP [dm6]	A	G	1.742e^-6	0.373	INTERGENIC
3L	10909368	3L_10909368_SNP [dm3] 3L_10916268_SNP [dm6]	T	C	1.803e^-6	0.373	INTERGENIC
3R	18955231	3R_18955231_SNP [dm3] 3R_23129509_SNP [dm6]	G	A	2.665e^-6	0.421	INTRON hh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8564808	2R_8564808_INS [dm3] 2R_12677303_INS [dm6]	T	TTTTTGTTTCATTTCTCAAA...	2.683e^-6	0.421	UPSTREAM CG42708 INTRON CG42708
3R	3964184	3R_3964184_SNP [dm3] 3R_8138462_SNP [dm6]	T	A	2.713e^-6	0.421	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	8564927	2R_8564927_SNP [dm3] 2R_12677422_SNP [dm6]	T	A	3.373e^-6	0.446	UPSTREAM CG42708 INTRON CG42708
2R	8564825	2R_8564825_SNP [dm3] 2R_12677320_SNP [dm6]	A	T	3.576e^-6	0.446	UPSTREAM CG42708 INTRON CG42708
2R	2817832	2R_2817832_SNP [dm3] 2R_6930327_SNP [dm6]	C	A	3.701e^-6	0.446	SYNONYMOUS_CODING mim	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	12597388	3R_12597388_DEL [dm3] 3R_16771666_DEL [dm6]	TCCAAGCCAATGCTTTTACA...	A	3.836e^-6	0.446	INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8564723	2R_8564723_SNP [dm3] 2R_12677218_SNP [dm6]	T	C	4.605e^-6	0.465	UPSTREAM CG42708 INTRON CG42708
2L	744124	2L_744124_DEL [dm3] 2L_744124_DEL [dm6]	TGCTCCTTAGCTT...	T	5.374e^-6	0.465	UTR_5_PRIME Eaat2 INTRON Eaat2
3R	20407172	3R_20407172_SNP [dm3] 3R_24581450_SNP [dm6]	C	T	5.455e^-6	0.465	INTRON CG13624	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3872068	2L_3872068_SNP [dm3] 2L_3872068_SNP [dm6]	C	A	5.579e^-6	0.465	DOWNSTREAM Cep97 & 1 other INTRON CG31957	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
X	12207372	X_12207372_SNP [dm3] X_12313339_SNP [dm6]	C	T	5.603e^-6	0.465	INTRON Ten-a
2L	744069	2L_744069_SNP [dm3] 2L_744069_SNP [dm6]	G	C	5.735e^-6	0.465	INTRON Eaat2
2R	8564805	2R_8564805_SNP [dm3] 2R_12677300_SNP [dm6]	G	A	6.086e^-6	0.465	UPSTREAM CG42708 INTRON CG42708
2L	9459078	2L_9459078_SNP [dm3] 2L_9459078_SNP [dm6]	T	C	6.182e^-6	0.465	INTRON numb
2R	15514869	2R_15514869_INS [dm3] 2R_19627364_INS [dm6]	C	CC	6.248e^-6	0.465	INTRON sm
3L	1140656	3L_1140656_SNP [dm3] 3L_1140656_SNP [dm6]	A	G	7.238e^-6	0.491	UTR_3_PRIME bab2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19204264	2L_19204264_SNP [dm3] 2L_19204264_SNP [dm6]	G	A	7.358e^-6	0.491	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_Kr
2R	15514830	2R_15514830_SNP [dm3] 2R_19627325_SNP [dm6]	T	C	7.848e^-6	0.491	INTRON sm
2R	15514786	2R_15514786_SNP [dm3] 2R_19627281_SNP [dm6]	A	G	7.849e^-6	0.491	INTRON sm
X	7732071	X_7732071_SNP [dm3] X_7838038_SNP [dm6]	C	T	7.978e^-6	0.491	INTRON CG1402
3L	9510270	3L_9510270_DEL [dm3] 3L_9517170_DEL [dm6]	TT	A	8.348e^-6	0.491	INTRON CG33700
3L	15012944	3L_15012944_SNP [dm3] 3L_15019844_SNP [dm6]	A	G	8.690e^-6	0.491	INTRON Sytbeta
2R	8564379	2R_8564379_SNP [dm3] 2R_12676874_SNP [dm6]	G	T	8.702e^-6	0.491	UPSTREAM CG42708 INTRON CG42708
X	11110031	X_11110031_SNP [dm3] X_11215998_SNP [dm6]	G	C	9.564e^-6	0.523	INTERGENIC
3L	17941952	3L_17941952_SNP [dm3] 3L_17948852_SNP [dm6]	T	A	1.048e^-5	0.557	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10630733	2L_10630733_SNP [dm3] 2L_10630733_SNP [dm6]	A	C	1.176e^-5	0.59	SYNONYMOUS_CODING CG7329	TF binding site mE1_TFBS_sens
3R	9606843	3R_9606843_SNP [dm3] 3R_13781121_SNP [dm6]	C	T	1.195e^-5	0.59	NON_SYNONYMOUS_CODING CG9286 DOWNSTREAM CG9288 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	11110229	X_11110229_SNP [dm3] X_11216196_SNP [dm6]	C	T	1.241e^-5	0.59	INTERGENIC
2L	19121423	2L_19121423_SNP [dm3] 2L_19121423_SNP [dm6]	G	A	1.251e^-5	0.59	UTR_3_PRIME l_2_37Cc DOWNSTREAM l_2_37Cc	regulatory region REDfly_CRMs
3R	21365535	3R_21365535_SNP [dm3] 3R_25539813_SNP [dm6]	A	G	1.268e^-5	0.59	INTRON msi
2L	6617729	2L_6617729_SNP [dm3] 2L_6617729_SNP [dm6]	A	G	1.347e^-5	0.611	DOWNSTREAM CG11050 INTRON CG11320	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12481458	3R_12481458_SNP [dm3] 3R_16655736_SNP [dm6]	G	A	1.431e^-5	0.621	UPSTREAM modSP DOWNSTREAM Ubx INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
X	11110005	X_11110005_SNP [dm3] X_11215972_SNP [dm6]	C	G	1.434e^-5	0.621	INTERGENIC
3R	19235650	3R_19235650_SNP [dm3] 3R_23409928_SNP [dm6]	G	A	1.475e^-5	0.624	UTR_3_PRIME CG4374
2R	14681130	2R_14681130_SNP [dm3] 2R_18793625_SNP [dm6]	G	A	1.552e^-5	0.642	SYNONYMOUS_CODING CG15080 DOWNSTREAM MFS15	TF binding site mE1_TFBS_chinmo
3R	19153765	3R_19153765_SNP [dm3] 3R_23328043_SNP [dm6]	C	T	1.628e^-5	0.659	INTRON pnt
3R	26303197	3R_26303197_SNP [dm3] 3R_30477475_SNP [dm6]	C	T	1.676e^-5	0.664	SYNONYMOUS_CODING spdo INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26177447	3R_26177447_DEL [dm3] 3R_30351725_DEL [dm6]	CA	C	1.823e^-5	0.707	INTRON hdc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18599257	3R_18599257_SNP [dm3] 3R_22773535_SNP [dm6]	G	A	2.016e^-5	0.727	UPSTREAM mir-4953 INTRON Usp12-46 & 1 other
3R	23968396	3R_23968396_SNP [dm3] 3R_28142674_SNP [dm6]	T	G	2.083e^-5	0.727	INTERGENIC
3R	5213803	3R_5213803_SNP [dm3] 3R_9388081_SNP [dm6]	G	C	2.124e^-5	0.727	INTRON FER
2R	14681136	2R_14681136_SNP [dm3] 2R_18793631_SNP [dm6]	C	A	2.158e^-5	0.727	SYNONYMOUS_CODING CG15080 DOWNSTREAM MFS15	TF binding site mE1_TFBS_chinmo
3R	14162854	3R_14162854_SNP [dm3] 3R_18337132_SNP [dm6]	G	T	2.177e^-5	0.727	INTRON CG15803
3L	5417994	3L_5417994_INS [dm3] 3L_5424894_INS [dm6]	G	GG	2.192e^-5	0.727	INTRON CG34391
3R	23901337	3R_23901337_SNP [dm3] 3R_28075615_SNP [dm6]	T	A	2.308e^-5	0.727	INTRON CG34362
3R	9609921	3R_9609921_SNP [dm3] 3R_13784199_SNP [dm6]	T	G	2.380e^-5	0.727	SYNONYMOUS_CODING Dip-B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4130323	2L_4130323_SNP [dm3] 2L_4130323_SNP [dm6]	G	A	2.414e^-5	0.727	INTERGENIC
2R	8564816	2R_8564816_SNP [dm3] 2R_12677311_SNP [dm6]	T	A	2.415e^-5	0.727	UPSTREAM CG42708 INTRON CG42708
2R	11460445	2R_11460445_SNP [dm3] 2R_15572940_SNP [dm6]	G	A	2.417e^-5	0.727	UTR_3_PRIME CG30466 DOWNSTREAM CG8204
3R	12578238	3R_12578238_SNP [dm3] 3R_16752516_SNP [dm6]	C	A	2.504e^-5	0.727	UPSTREAM bxd INTRON bxd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12579190	3R_12579190_SNP [dm3] 3R_16753468_SNP [dm6]	G	A	2.504e^-5	0.727	INTRON bxd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12590223	3R_12590223_SNP [dm3] 3R_16764501_SNP [dm6]	A	G	2.504e^-5	0.727	UPSTREAM tre-3 DOWNSTREAM tre-1 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3R	12594930	3R_12594930_SNP [dm3] 3R_16769208_SNP [dm6]	A	C	2.504e^-5	0.727	INTRON bxd	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1904112	2L_1904112_SNP [dm3] 2L_1904112_SNP [dm6]	C	A	2.516e^-5	0.727	INTRON CG7337
3R	26177446	3R_26177446_SNP [dm3] 3R_30351724_SNP [dm6]	C	G	2.563e^-5	0.727	INTRON hdc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15514901	2R_15514901_SNP [dm3] 2R_19627396_SNP [dm6]	G	A	2.743e^-5	0.727	INTRON sm
3R	16986024	3R_16986024_SNP [dm3] 3R_21160302_SNP [dm6]	C	A	2.745e^-5	0.727	NON_SYNONYMOUS_CODING CG10824 INTRON SNF4Agamma
2R	7359147	2R_7359147_SNP [dm3] 2R_11471642_SNP [dm6]	T	G	2.749e^-5	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15514959	2R_15514959_SNP [dm3] 2R_19627454_SNP [dm6]	T	C	2.758e^-5	0.727	INTRON sm
3L	10909309	3L_10909309_SNP [dm3] 3L_10916209_SNP [dm6]	A	G	2.785e^-5	0.727	INTERGENIC
3R	18185951	3R_18185951_SNP [dm3] 3R_22360229_SNP [dm6]	G	A	2.827e^-5	0.727	UTR_3_PRIME Sar1 DOWNSTREAM PSR
3R	14896169	3R_14896169_SNP [dm3] 3R_19070447_SNP [dm6]	C	T	2.846e^-5	0.727	INTRON cdi
2L	5263639	2L_5263639_SNP [dm3] 2L_5263639_SNP [dm6]	C	T	2.853e^-5	0.727	UPSTREAM Cyp4ac1 INTRON tkv
3R	25602005	3R_25602005_DEL [dm3] 3R_29776283_DEL [dm6]	ACAAAACACAA...	A	2.931e^-5	0.737	INTRON kay
3R	5402887	3R_5402887_SNP [dm3] 3R_9577165_SNP [dm6]	A	G	3.017e^-5	0.748	UPSTREAM CG8273 INTRON Kap-alpha3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	17952227	3R_17952227_SNP [dm3] 3R_22126505_SNP [dm6]	T	C	3.126e^-5	0.76	INTRON CG42390	TF binding site mE1_TFBS_cad
X	13870282	X_13870282_SNP [dm3] X_13976249_SNP [dm6]	T	C	3.207e^-5	0.76	INTRON mamo
3R	17952195	3R_17952195_SNP [dm3] 3R_22126473_SNP [dm6]	T	G	3.216e^-5	0.76	SPLICE_SITE_REGION CG42390 INTRON CG42390	TF binding site mE1_TFBS_cad
3R	25601378	3R_25601378_INS [dm3] 3R_29775656_INS [dm6]	T	TCACT	3.244e^-5	0.76	INTRON kay	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	26612711	3R_26612711_SNP [dm3] 3R_30786989_SNP [dm6]	A	G	3.268e^-5	0.76	UTR_3_PRIME zfh1
3R	9606400	3R_9606400_SNP [dm3] 3R_13780678_SNP [dm6]	T	A	3.339e^-5	0.764	UTR_3_PRIME CG42375 & 1 other UPSTREAM CG9286	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13956798	2L_13956798_SNP [dm3] 2L_13956798_SNP [dm6]	T	C	3.428e^-5	0.764	UPSTREAM NimA DOWNSTREAM Ance-3 INTERGENIC
2R	13693286	2R_13693286_SNP [dm3] 2R_17805781_SNP [dm6]	C	T	3.438e^-5	0.764	INTRON grh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sbb
3L	7812046	3L_7812046_SNP [dm3] 3L_7818946_SNP [dm6]	T	A	3.451e^-5	0.764	INTRON Pdp1	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	21365503	3R_21365503_SNP [dm3] 3R_25539781_SNP [dm6]	A	T	3.491e^-5	0.764	INTRON msi
X	9092643	X_9092643_SNP [dm3] X_9198610_SNP [dm6]	A	G	3.733e^-5	0.808	SYNONYMOUS_CODING su_r_	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20289950	2L_20289950_SNP [dm3] 2L_20289950_SNP [dm6]	G	A	4.030e^-5	0.809	INTERGENIC
X	12206837	X_12206837_SNP [dm3] X_12312804_SNP [dm6]	A	G	4.040e^-5	0.809	SYNONYMOUS_CODING Ten-a
3R	3964138	3R_3964138_SNP [dm3] 3R_8138416_SNP [dm6]	A	G	4.128e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	945540	X_945540_SNP [dm3] X_1051507_SNP [dm6]	A	G	4.195e^-5	0.809	UPSTREAM CG14629 INTRON CR44779
2R	8564418	2R_8564418_SNP [dm3] 2R_12676913_SNP [dm6]	C	A	4.287e^-5	0.809	UPSTREAM CG42708 INTRON CG42708
3R	5175468	3R_5175468_SNP [dm3] 3R_9349746_SNP [dm6]	G	T	4.333e^-5	0.809	INTRON CG45050	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15052893	2R_15052893_SNP [dm3] 2R_19165388_SNP [dm6]	A	G	4.336e^-5	0.809	START_GAINED CG10737 UTR_5_PRIME CG10737 INTRON CG10737
3R	11282175	3R_11282175_DEL [dm3] 3R_15456453_DEL [dm6]	ATTGTA	A	4.446e^-5	0.809	INTRON AdamTS-A
3L	3577024	3L_3577024_SNP [dm3] 3L_3577024_SNP [dm6]	C	G	4.465e^-5	0.809	INTRON Eip63E
2L	4157435	2L_4157435_SNP [dm3] 2L_4157435_SNP [dm6]	T	A	4.532e^-5	0.809	INTERGENIC
3L	13953197	3L_13953197_SNP [dm3] 3L_13960097_SNP [dm6]	G	A	4.554e^-5	0.809	INTRON CG32137
X	938024	X_938024_SNP [dm3] X_1043991_SNP [dm6]	T	G	4.643e^-5	0.809	SYNONYMOUS_CODING su_w[a]_ UTR_3_PRIME su_w[a]_
3R	26177428	3R_26177428_SNP [dm3] 3R_30351706_SNP [dm6]	A	G	4.649e^-5	0.809	INTRON hdc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23986512	3R_23986512_SNP [dm3] 3R_28160790_SNP [dm6]	C	G	4.681e^-5	0.809	INTRON CG34354
X	9092658	X_9092658_SNP [dm3] X_9198625_SNP [dm6]	G	A	4.798e^-5	0.809	SYNONYMOUS_CODING su_r_	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3608760	2L_3608760_SNP [dm3] 2L_3608760_SNP [dm6]	C	T	4.914e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10452162	3L_10452162_SNP [dm3] 3L_10459062_SNP [dm6]	A	G	4.966e^-5	0.809	DOWNSTREAM Gem3 INTERGENIC
X	10897698	X_10897698_SNP [dm3] X_11003665_SNP [dm6]	A	T	5.118e^-5	0.809	INTRON CG42339
2R	8582814	2R_8582814_SNP [dm3] 2R_12695309_SNP [dm6]	A	T	5.184e^-5	0.809	INTERGENIC
3L	1115570	3L_1115570_SNP [dm3] 3L_1115570_SNP [dm6]	C	T	5.223e^-5	0.809	INTERGENIC
3L	21602078	3L_21602078_SNP [dm3] 3L_21608978_SNP [dm6]	A	T	5.374e^-5	0.809	INTRON TfAP-2	TF binding site mE1_TFBS_HSA
3L	6984254	3L_6984254_SNP [dm3] 3L_6991154_SNP [dm6]	G	C	5.389e^-5	0.809	SYNONYMOUS_CODING bin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5929926	3L_5929926_SNP [dm3] 3L_5936826_SNP [dm6]	C	T	5.522e^-5	0.809	INTRON CG33993
3R	26302013	3R_26302013_SNP [dm3] 3R_30476291_SNP [dm6]	A	G	5.566e^-5	0.809	UPSTREAM spdo INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21365518	3R_21365518_SNP [dm3] 3R_25539796_SNP [dm6]	C	T	5.618e^-5	0.809	INTRON msi
3R	22567178	3R_22567178_SNP [dm3] 3R_26741456_SNP [dm6]	A	G	5.868e^-5	0.809	INTERGENIC
X	3219347	X_3219347_SNP [dm3] X_3325314_SNP [dm6]	G	A	5.876e^-5	0.809	INTRON CR44886 & 1 other
X	16859496	X_16859496_SNP [dm3] X_16965463_SNP [dm6]	C	T	5.928e^-5	0.809	INTRON CG9086	TF binding site BDTNP1_TFBS_twi
3R	18587704	3R_18587704_SNP [dm3] 3R_22761982_SNP [dm6]	G	A	5.941e^-5	0.809	SYNONYMOUS_CODING CG4723 UPSTREAM CG4725 INTRON Usp12-46 & 1 other
3R	20539362	3R_20539362_SNP [dm3] 3R_24713640_SNP [dm6]	C	A	5.942e^-5	0.809	INTRON CG13627
3L	11064438	3L_11064438_SNP [dm3] 3L_11071338_SNP [dm6]	G	T	6.077e^-5	0.809	INTRON Mocs1
X	940644	X_940644_SNP [dm3] X_1046611_SNP [dm6]	C	T	6.087e^-5	0.809	UPSTREAM CR44779 DOWNSTREAM su_w[a]_ INTRON CG42259	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2936915	2L_2936915_SNP [dm3] 2L_2936915_SNP [dm6]	T	C	6.104e^-5	0.809	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16906567	X_16906567_SNP [dm3] X_17012534_SNP [dm6]	T	C	6.169e^-5	0.809	INTRON CG45002
3L	15792674	3L_15792674_SNP [dm3] 3L_15799574_SNP [dm6]	C	T	6.246e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18750707	2R_18750707_DEL [dm3] 2R_22863184_DEL [dm6]	CGTGCCACAC	C	6.254e^-5	0.809	INTERGENIC
3L	10901298	3L_10901298_SNP [dm3] 3L_10908198_SNP [dm6]	C	A	6.265e^-5	0.809	INTERGENIC
2L	1602561	2L_1602561_SNP [dm3] 2L_1602561_SNP [dm6]	T	A	6.283e^-5	0.809	SYNONYMOUS_CODING haf INTRON CG31935
3L	5343949	3L_5343949_SNP [dm3] 3L_5350849_SNP [dm6]	A	T	6.347e^-5	0.809	INTRON lama
2L	3893370	2L_3893370_SNP [dm3] 2L_3893370_SNP [dm6]	A	G	6.387e^-5	0.809	NON_SYNONYMOUS_CODING capu
3R	20539409	3R_20539409_SNP [dm3] 3R_24713687_SNP [dm6]	C	A	6.443e^-5	0.809	INTRON CG13627
2R	12532956	2R_12532956_SNP [dm3] 2R_16645451_SNP [dm6]	C	T	6.603e^-5	0.809	SYNONYMOUS_CODING gprs	TF binding site mE1_TFBS_cad
3L	4702947	3L_4702947_SNP [dm3] 3L_4702947_SNP [dm6]	G	T	6.616e^-5	0.809	UPSTREAM CR43879 INTRON RhoGEF64C
2L	1559804	2L_1559804_SNP [dm3] 2L_1559804_SNP [dm6]	A	G	6.687e^-5	0.809	INTRON haf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20328016	3R_20328016_SNP [dm3] 3R_24502294_SNP [dm6]	A	G	6.717e^-5	0.809	INTERGENIC	TF binding site mE1_TFBS_inv
3L	13375174	3L_13375174_SNP [dm3] 3L_13382074_SNP [dm6]	C	T	6.750e^-5	0.809	UPSTREAM CG14107 & 1 other INTERGENIC
3R	19490734	3R_19490734_SNP [dm3] 3R_23665012_SNP [dm6]	G	A	6.757e^-5	0.809	INTRON CG31145
2R	15515043	2R_15515043_SNP [dm3] 2R_19627538_SNP [dm6]	T	A	6.867e^-5	0.809	INTRON sm
3R	26302060	3R_26302060_DEL [dm3] 3R_30476338_DEL [dm6]	AC	A	6.916e^-5	0.809	UPSTREAM spdo INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	11110397	X_11110397_SNP [dm3] X_11216364_SNP [dm6]	A	C	7.044e^-5	0.809	INTERGENIC
2R	15430859	2R_15430859_SNP [dm3] 2R_19543354_SNP [dm6]	G	C	7.108e^-5	0.809	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	15945556	3R_15945556_SNP [dm3] 3R_20119834_SNP [dm6]	T	A	7.129e^-5	0.809	INTERGENIC
2R	15438472	2R_15438472_SNP [dm3] 2R_19550967_SNP [dm6]	T	G	7.141e^-5	0.809	INTRON sm
3R	14896343	3R_14896343_SNP [dm3] 3R_19070621_SNP [dm6]	G	T	7.158e^-5	0.809	INTRON cdi
3L	9510274	3L_9510274_SNP [dm3] 3L_9517174_SNP [dm6]	T	C	7.193e^-5	0.809	INTRON CG33700
3R	26656699	3R_26656699_SNP [dm3] 3R_30830977_SNP [dm6]	T	C	7.239e^-5	0.809	INTRON CG15544
2R	16684556	2R_16684556_SNP [dm3] 2R_20797051_SNP [dm6]	T	C	7.289e^-5	0.809	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9040792	X_9040792_SNP [dm3] X_9146759_SNP [dm6]	G	A	7.348e^-5	0.809	NON_SYNONYMOUS_CODING CG7065	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8823022	2L_8823022_SNP [dm3] 2L_8823022_SNP [dm6]	C	G	7.352e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8823024	2L_8823024_SNP [dm3] 2L_8823024_SNP [dm6]	A	T	7.352e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8823025	2L_8823025_SNP [dm3] 2L_8823025_SNP [dm6]	G	A	7.352e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8823036	2L_8823036_SNP [dm3] 2L_8823036_SNP [dm6]	C	T	7.352e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13359125	3R_13359125_SNP [dm3] 3R_17533403_SNP [dm6]	C	A	7.403e^-5	0.809	INTRON CG5823
2L	5872774	2L_5872774_SNP [dm3] 2L_5872774_SNP [dm6]	C	A	7.481e^-5	0.809	INTRON rau	TF binding site mE1_TFBS_sens
2L	2326524	2L_2326524_SNP [dm3] 2L_2326524_SNP [dm6]	A	C	7.530e^-5	0.809	INTRON CG9967 & 1 other	TF binding site mE1_TFBS_chinmo
2R	19048760	2R_19048760_SNP [dm3] 2R_23161237_SNP [dm6]	C	T	7.535e^-5	0.809	SYNONYMOUS_CODING CG9899
2L	3893833	2L_3893833_SNP [dm3] 2L_3893833_SNP [dm6]	A	T	7.549e^-5	0.809	INTRON capu
2R	14674320	2R_14674320_SNP [dm3] 2R_18786815_SNP [dm6]	A	T	7.676e^-5	0.809	INTRON CG15080
2R	4225435	2R_4225435_SNP [dm3] 2R_8337930_SNP [dm6]	A	T	7.726e^-5	0.809	INTRON pdm3
2R	17075561	2R_17075561_SNP [dm3] 2R_21188056_SNP [dm6]	G	A	7.928e^-5	0.809	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
3R	18185944	3R_18185944_SNP [dm3] 3R_22360222_SNP [dm6]	C	A	7.941e^-5	0.809	UTR_3_PRIME Sar1 DOWNSTREAM PSR
3R	18185952	3R_18185952_SNP [dm3] 3R_22360230_SNP [dm6]	A	C	7.941e^-5	0.809	UTR_3_PRIME Sar1 DOWNSTREAM PSR
3L	7439808	3L_7439808_INS [dm3] 3L_7446708_INS [dm6]	T	TGT	8.038e^-5	0.809	INTRON CG42458
X	20580672	X_20580672_SNP [dm3] X_20709645_SNP [dm6]	A	G	8.070e^-5	0.809	INTERGENIC	regulatory region REDfly_CRMs
3R	26689402	3R_26689402_SNP [dm3] 3R_30863680_SNP [dm6]	A	T	8.100e^-5	0.809	INTERGENIC
3R	14145413	3R_14145413_SNP [dm3] 3R_18319691_SNP [dm6]	T	C	8.117e^-5	0.809	INTRON CG31235
2L	15279807	2L_15279807_SNP [dm3] 2L_15279807_SNP [dm6]	C	T	8.250e^-5	0.809	UPSTREAM CR45349 DOWNSTREAM CR43682 INTERGENIC
2L	15279818	2L_15279818_SNP [dm3] 2L_15279818_SNP [dm6]	T	C	8.250e^-5	0.809	UPSTREAM CR45349 DOWNSTREAM CR43682 INTERGENIC
3L	10904348	3L_10904348_SNP [dm3] 3L_10911248_SNP [dm6]	T	C	8.277e^-5	0.809	INTERGENIC
3R	5213806	3R_5213806_SNP [dm3] 3R_9388084_SNP [dm6]	G	C	8.417e^-5	0.809	INTRON FER
3R	16491322	3R_16491322_SNP [dm3] 3R_20665600_SNP [dm6]	A	G	8.434e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18867469	2L_18867469_SNP [dm3] 2L_18867469_SNP [dm6]	A	G	8.483e^-5	0.809	UPSTREAM mir-4946 INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18766884	3R_18766884_INS [dm3] 3R_22941162_INS [dm6]	T	TGG	8.620e^-5	0.809	INTRON klg
3R	18716066	3R_18716066_SNP [dm3] 3R_22890344_SNP [dm6]	G	A	8.625e^-5	0.809	INTERGENIC
3L	5427927	3L_5427927_INS [dm3] 3L_5434827_INS [dm6]	G	GA	8.654e^-5	0.809	INTRON CG34391
3L	12092411	3L_12092411_SNP [dm3] 3L_12099311_SNP [dm6]	T	C	8.655e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15138181	2R_15138181_SNP [dm3] 2R_19250676_SNP [dm6]	C	T	8.701e^-5	0.809	SYNONYMOUS_CODING wbl DOWNSTREAM CG33454
2R	8147903	2R_8147903_DEL [dm3] 2R_12260398_DEL [dm6]	CACAC	C	8.798e^-5	0.809	INTRON Cam EXON CR43900	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	14380985	3R_14380985_INS [dm3] 3R_18555263_INS [dm6]	T	TTT	8.836e^-5	0.809	INTERGENIC
3L	3915404	3L_3915404_SNP [dm3] 3L_3915404_SNP [dm6]	C	T	8.885e^-5	0.809	INTRON Eip63F-1
2L	17254569	2L_17254569_SNP [dm3] 2L_17254569_SNP [dm6]	T	G	8.894e^-5	0.809	INTRON beat-IIIc
2L	8822964	2L_8822964_INS [dm3] 2L_8822964_INS [dm6]	G	ACACTTCAACGA...	8.906e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10571032	3L_10571032_SNP [dm3] 3L_10577932_SNP [dm6]	C	T	8.928e^-5	0.809	INTRON A2bp1
2R	15109820	2R_15109820_SNP [dm3] 2R_19222315_SNP [dm6]	G	A	8.967e^-5	0.809	INTRON hppy
3L	3915399	3L_3915399_SNP [dm3] 3L_3915399_SNP [dm6]	C	T	9.007e^-5	0.809	INTRON Eip63F-1
3L	3915423	3L_3915423_SNP [dm3] 3L_3915423_SNP [dm6]	G	T	9.007e^-5	0.809	INTRON Eip63F-1
2L	12381479	2L_12381479_SNP [dm3] 2L_12381479_SNP [dm6]	T	C	9.037e^-5	0.809	INTRON bru-2
2R	15138592	2R_15138592_SNP [dm3] 2R_19251087_SNP [dm6]	T	A	9.060e^-5	0.809	SYNONYMOUS_CODING CG33454 DOWNSTREAM wbl
3L	10570127	3L_10570127_SNP [dm3] 3L_10577027_SNP [dm6]	C	T	9.067e^-5	0.809	INTRON A2bp1
3R	22663429	3R_22663429_SNP [dm3] 3R_26837707_SNP [dm6]	C	T	9.113e^-5	0.809	INTRON Tl
X	19360408	X_19360408_SNP [dm3] X_19466375_SNP [dm6]	C	T	9.251e^-5	0.809	INTRON kek5
2R	19270590	2R_19270590_SNP [dm3] 2R_23383067_SNP [dm6]	G	C	9.290e^-5	0.809	NON_SYNONYMOUS_CODING CG13551 UPSTREAM CR44784 DOWNSTREAM yellow-d2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	6784186	2R_6784186_SNP [dm3] 2R_10896681_SNP [dm6]	C	A	9.302e^-5	0.809	DOWNSTREAM CG7712 INTRON CG12942	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15515046	2R_15515046_SNP [dm3] 2R_19627541_SNP [dm6]	C	G	9.321e^-5	0.809	INTRON sm
X	13245137	X_13245137_SNP [dm3] X_13351104_SNP [dm6]	C	A	9.330e^-5	0.809	INTERGENIC
2R	7836750	2R_7836750_INS [dm3] 2R_11949245_INS [dm6]	T	TAAATTAAATT...	9.360e^-5	0.809	INTRON CG13188
2R	7836753	2R_7836753_SNP [dm3] 2R_11949248_SNP [dm6]	G	A	9.360e^-5	0.809	INTRON CG13188
3L	17941491	3L_17941491_SNP [dm3] 3L_17948391_SNP [dm6]	C	T	9.372e^-5	0.809	UPSTREAM CR45393 INTERGENIC
X	14844007	X_14844007_SNP [dm3] X_14949974_SNP [dm6]	C	G	9.460e^-5	0.809	INTRON pdgy	TF binding site BDTNP1_TFBS_dl
2L	13971710	2L_13971710_SNP [dm3] 2L_13971710_SNP [dm6]	C	T	9.640e^-5	0.809	DOWNSTREAM He INTRON NimB5	TF binding site mE1_TFBS_cad
2L	8822968	2L_8822968_SNP [dm3] 2L_8822968_SNP [dm6]	A	T	9.660e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8822970	2L_8822970_INS [dm3] 2L_8822970_INS [dm6]	G	GAAGT	9.660e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5898455	2L_5898455_SNP [dm3] 2L_5898455_SNP [dm6]	A	G	9.772e^-5	0.809	INTERGENIC
2L	6617744	2L_6617744_SNP [dm3] 2L_6617744_SNP [dm6]	C	T	9.898e^-5	0.809	DOWNSTREAM CG11050 INTRON CG11320	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6784160	2R_6784160_INS [dm3] 2R_10896655_INS [dm6]	C	CTTAATCT	9.976e^-5	0.809	DOWNSTREAM CG7712 INTRON CG12942	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17952234	3R_17952234_SNP [dm3] 3R_22126512_SNP [dm6]	G	T	1.001e^-4	0.809	INTRON CG42390	TF binding site mE1_TFBS_cad
3R	17952243	3R_17952243_SNP [dm3] 3R_22126521_SNP [dm6]	A	G	1.001e^-4	0.809	INTRON CG42390	TF binding site mE1_TFBS_cad
3L	18089997	3L_18089997_SNP [dm3] 3L_18096897_SNP [dm6]	T	C	1.008e^-4	0.809	INTRON CG13698
2L	13719518	2L_13719518_SNP [dm3] 2L_13719518_SNP [dm6]	T	C	1.008e^-4	0.809	INTERGENIC
3R	16508896	3R_16508896_SNP [dm3] 3R_20683174_SNP [dm6]	T	C	1.008e^-4	0.809	INTERGENIC
2R	16202165	2R_16202165_SNP [dm3] 2R_20314660_SNP [dm6]	A	G	1.008e^-4	0.809	UPSTREAM CR44642 INTRON CG13868
2R	14901324	2R_14901324_SNP [dm3] 2R_19013819_SNP [dm6]	G	A	1.014e^-4	0.809	INTERGENIC
X	14733606	X_14733606_SNP [dm3] X_14839573_SNP [dm6]	A	T	1.021e^-4	0.809	UPSTREAM Flo2 & 1 other INTRON Flo2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	23207321	3R_23207321_SNP [dm3] 3R_27381599_SNP [dm6]	A	G	1.025e^-4	0.809	UTR_3_PRIME side INTRON side
3R	23208690	3R_23208690_SNP [dm3] 3R_27382968_SNP [dm6]	G	C	1.025e^-4	0.809	INTRON side
3R	23210357	3R_23210357_SNP [dm3] 3R_27384635_SNP [dm6]	G	C	1.025e^-4	0.809	INTRON side
2L	1652589	2L_1652589_SNP [dm3] 2L_1652589_SNP [dm6]	C	T	1.026e^-4	0.809	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12580517	3R_12580517_SNP [dm3] 3R_16754795_SNP [dm6]	T	C	1.031e^-4	0.809	INTRON bxd	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	17952196	3R_17952196_SNP [dm3] 3R_22126474_SNP [dm6]	A	T	1.032e^-4	0.809	SPLICE_SITE_REGION CG42390 INTRON CG42390	TF binding site mE1_TFBS_cad
2R	13919508	2R_13919508_SNP [dm3] 2R_18032003_SNP [dm6]	A	T	1.032e^-4	0.809	INTERGENIC
3R	26303011	3R_26303011_SNP [dm3] 3R_30477289_SNP [dm6]	A	G	1.042e^-4	0.809	SYNONYMOUS_CODING spdo INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22374932	3R_22374932_SNP [dm3] 3R_26549210_SNP [dm6]	A	C	1.044e^-4	0.809	INTRON scrib
X	12207353	X_12207353_DEL [dm3] X_12313320_DEL [dm6]	CC	C	1.051e^-4	0.809	INTRON Ten-a
2R	19048619	2R_19048619_SNP [dm3] 2R_23161096_SNP [dm6]	C	T	1.060e^-4	0.809	SYNONYMOUS_CODING CG9899
3R	9587819	3R_9587819_SNP [dm3] 3R_13762097_SNP [dm6]	C	A	1.060e^-4	0.809	UTR_3_PRIME CG34383 DOWNSTREAM CG34383 INTRON CG34383
2L	4206726	2L_4206726_SNP [dm3] 2L_4206726_SNP [dm6]	C	A	1.061e^-4	0.809	NON_SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	1676146	3L_1676146_SNP [dm3] 3L_1676146_SNP [dm6]	G	T	1.062e^-4	0.809	INTRON CG7991
3L	22908013	3L_22908013_SNP [dm3] 3L_22914913_SNP [dm6]	G	C	1.064e^-4	0.809	DOWNSTREAM CG12768 INTRON CG12768
3R	17952168	3R_17952168_SNP [dm3] 3R_22126446_SNP [dm6]	C	A	1.064e^-4	0.809	SYNONYMOUS_CODING CG42390	TF binding site mE1_TFBS_cad
2R	14680905	2R_14680905_SNP [dm3] 2R_18793400_SNP [dm6]	C	T	1.065e^-4	0.809	SYNONYMOUS_CODING CG15080
3L	5781105	3L_5781105_SNP [dm3] 3L_5788005_SNP [dm6]	C	G	1.067e^-4	0.809	INTERGENIC
3L	20798049	3L_20798049_SNP [dm3] 3L_20804949_SNP [dm6]	C	T	1.069e^-4	0.809	SYNONYMOUS_CODING Spc105R
3L	1828492	3L_1828492_SNP [dm3] 3L_1828492_SNP [dm6]	G	T	1.070e^-4	0.809	INTRON Cpr62Ba
2R	20226421	2R_20226421_SNP [dm3] 2R_24338898_SNP [dm6]	T	C	1.071e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16857206	3R_16857206_SNP [dm3] 3R_21031484_SNP [dm6]	T	C	1.074e^-4	0.809	SYNONYMOUS_CODING Dhc93AB
3R	25433986	3R_25433986_SNP [dm3] 3R_29608264_SNP [dm6]	C	T	1.078e^-4	0.809	UPSTREAM Diedel2 INTRON alph
2R	6784181	2R_6784181_SNP [dm3] 2R_10896676_SNP [dm6]	C	T	1.079e^-4	0.809	DOWNSTREAM CG7712 INTRON CG12942	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	6197902	3R_6197902_SNP [dm3] 3R_10372180_SNP [dm6]	G	A	1.084e^-4	0.809	SYNONYMOUS_CODING Rfx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14029254	2L_14029254_SNP [dm3] 2L_14029254_SNP [dm6]	A	C	1.084e^-4	0.809	UTR_3_PRIME CG4500 DOWNSTREAM CG18095
3R	17908161	3R_17908161_DEL [dm3] 3R_22082439_DEL [dm6]	CGA	C	1.088e^-4	0.809	INTRON CG13408
2L	6617389	2L_6617389_SNP [dm3] 2L_6617389_SNP [dm6]	T	C	1.095e^-4	0.809	DOWNSTREAM CG11050 INTRON CG11320	TF binding site mE1_TFBS_cad
3R	23209746	3R_23209746_SNP [dm3] 3R_27384024_SNP [dm6]	C	A	1.100e^-4	0.809	INTRON side
X	7733463	X_7733463_SNP [dm3] X_7839430_SNP [dm6]	A	C	1.106e^-4	0.809	INTRON CG1402
3L	5025491	3L_5025491_SNP [dm3] 3L_5025491_SNP [dm6]	T	A	1.110e^-4	0.809	INTRON Con
3R	18843028	3R_18843028_SNP [dm3] 3R_23017306_SNP [dm6]	G	T	1.114e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	8823014	2L_8823014_SNP [dm3] 2L_8823014_SNP [dm6]	G	T	1.118e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8823073	2L_8823073_SNP [dm3] 2L_8823073_SNP [dm6]	C	G	1.118e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	811250	2L_811250_SNP [dm3] 2L_811250_SNP [dm6]	C	G	1.120e^-4	0.809	UPSTREAM Dbp21E2 INTRON Nnf1b
3L	15770584	3L_15770584_SNP [dm3] 3L_15777484_SNP [dm6]	G	T	1.123e^-4	0.809	INTERGENIC
2L	1557648	2L_1557648_SNP [dm3] 2L_1557648_SNP [dm6]	A	T	1.127e^-4	0.809	INTRON haf	TF binding site mE1_TFBS_HSA
3L	17942169	3L_17942169_INS [dm3] 3L_17949069_INS [dm6]	G	GAAAT	1.130e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	871395	3L_871395_SNP [dm3] 3L_871395_SNP [dm6]	T	C	1.135e^-4	0.809	UTR_3_PRIME CG12502 UPSTREAM CG32479 DOWNSTREAM CG12502	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_Trl
3L	11191924	3L_11191924_SNP [dm3] 3L_11198824_SNP [dm6]	A	G	1.137e^-4	0.809	SYNONYMOUS_CODING Plod UPSTREAM CG7607	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17628290	X_17628290_SNP [dm3] X_17734257_SNP [dm6]	G	A	1.139e^-4	0.809	INTRON CG42684	TF binding site BDTNP1_TFBS_dl
3R	9154699	3R_9154699_SNP [dm3] 3R_13328977_SNP [dm6]	C	T	1.145e^-4	0.809	DOWNSTREAM PK2-R2 INTERGENIC
3R	26587698	3R_26587698_SNP [dm3] 3R_30761976_SNP [dm6]	C	T	1.145e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2R	19318640	2R_19318640_SNP [dm3] 2R_23431117_SNP [dm6]	T	C	1.146e^-4	0.809	INTRON CG9815
2L	8822957	2L_8822957_SNP [dm3] 2L_8822957_SNP [dm6]	A	T	1.152e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15221289	2L_15221289_SNP [dm3] 2L_15221289_SNP [dm6]	T	C	1.159e^-4	0.809	INTERGENIC
3R	14924531	3R_14924531_SNP [dm3] 3R_19098809_SNP [dm6]	A	G	1.167e^-4	0.809	INTRON CG6040
3R	17814880	3R_17814880_SNP [dm3] 3R_21989158_SNP [dm6]	G	T	1.168e^-4	0.809	INTRON Eip93F
2L	8823068	2L_8823068_SNP [dm3] 2L_8823068_SNP [dm6]	G	T	1.169e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19489997	3R_19489997_SNP [dm3] 3R_23664275_SNP [dm6]	T	G	1.172e^-4	0.809	INTRON CG31145
2R	15515052	2R_15515052_SNP [dm3] 2R_19627547_SNP [dm6]	A	T	1.174e^-4	0.809	INTRON sm
2L	8822935	2L_8822935_SNP [dm3] 2L_8822935_SNP [dm6]	A	G	1.177e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21560851	3R_21560851_SNP [dm3] 3R_25735129_SNP [dm6]	T	A	1.183e^-4	0.809	INTRON LpR2
2R	16839286	2R_16839286_SNP [dm3] 2R_20951781_SNP [dm6]	A	C	1.196e^-4	0.809	DOWNSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	9860888	3R_9860888_SNP [dm3] 3R_14035166_SNP [dm6]	A	T	1.197e^-4	0.809	UTR_3_PRIME CG9922 DOWNSTREAM CG3061
4	269028	4_269028_SNP [dm3] 4_248402_SNP [dm6]	C	T	1.202e^-4	0.809	INTRON dpr7	transposable element FlyBase
2R	8564595	2R_8564595_SNP [dm3] 2R_12677090_SNP [dm6]	A	G	1.206e^-4	0.809	UPSTREAM CG42708 INTRON CG42708
3R	23840652	3R_23840652_SNP [dm3] 3R_28014930_SNP [dm6]	G	C	1.210e^-4	0.809	INTERGENIC
3R	26286761	3R_26286761_SNP [dm3] 3R_30461039_SNP [dm6]	C	T	1.210e^-4	0.809	INTRON CDase	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	871410	3L_871410_SNP [dm3] 3L_871410_SNP [dm6]	T	A	1.217e^-4	0.809	UTR_3_PRIME CG12502 UPSTREAM CG32479 DOWNSTREAM CG12502	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_Trl
2L	14301848	2L_14301848_SNP [dm3] 2L_14301848_SNP [dm6]	A	G	1.218e^-4	0.809	INTRON wb
3R	14439755	3R_14439755_SNP [dm3] 3R_18614033_SNP [dm6]	T	C	1.230e^-4	0.809	INTRON qin & 1 other
2R	11399141	2R_11399141_SNP [dm3] 2R_15511636_SNP [dm6]	G	A	1.234e^-4	0.809	UPSTREAM GalNAc-T1 INTERGENIC
2L	3540500	2L_3540500_SNP [dm3] 2L_3540500_SNP [dm6]	A	C	1.237e^-4	0.809	INTRON drm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3R	6680782	3R_6680782_SNP [dm3] 3R_10855060_SNP [dm6]	A	G	1.244e^-4	0.809	UPSTREAM CG6567 INTRON CG4511	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	9618109	X_9618109_INS [dm3] X_9724076_INS [dm6]	T	TGACACCCCCCTTTC...	1.252e^-4	0.809	INTERGENIC
3R	26675947	3R_26675947_SNP [dm3] 3R_30850225_SNP [dm6]	C	T	1.254e^-4	0.809	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	26675960	3R_26675960_DEL [dm3] 3R_30850238_DEL [dm6]	TG	T	1.254e^-4	0.809	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	26675975	3R_26675975_SNP [dm3] 3R_30850253_SNP [dm6]	T	C	1.254e^-4	0.809	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	12981352	3L_12981352_SNP [dm3] 3L_12988252_SNP [dm6]	T	C	1.258e^-4	0.809	INTERGENIC
3L	13609485	3L_13609485_SNP [dm3] 3L_13616385_SNP [dm6]	A	T	1.264e^-4	0.809	INTRON bru-3
X	7732201	X_7732201_SNP [dm3] X_7838168_SNP [dm6]	A	C	1.272e^-4	0.809	INTRON CG1402	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3R	13359262	3R_13359262_SNP [dm3] 3R_17533540_SNP [dm6]	T	A	1.273e^-4	0.809	INTRON CG5823
2L	3794408	2L_3794408_SNP [dm3] 2L_3794408_SNP [dm6]	G	A	1.276e^-4	0.809	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1087706	3L_1087706_SNP [dm3] 3L_1087706_SNP [dm6]	T	C	1.282e^-4	0.809	INTRON bab1
2L	6872114	2L_6872114_SNP [dm3] 2L_6872114_SNP [dm6]	C	T	1.284e^-4	0.809	SPLICE_SITE_DONOR CR44915 UPSTREAM CR44914 INTRON CR44915
2R	18889569	2R_18889569_SNP [dm3] 2R_23002046_SNP [dm6]	C	T	1.288e^-4	0.809	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	18955039	3R_18955039_SNP [dm3] 3R_23129317_SNP [dm6]	A	G	1.295e^-4	0.809	SYNONYMOUS_CODING hh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9784720	2L_9784720_SNP [dm3] 2L_9784720_SNP [dm6]	C	T	1.302e^-4	0.809	INTRON IP3K1
2L	19520473	2L_19520473_SNP [dm3] 2L_19520473_SNP [dm6]	G	A	1.306e^-4	0.809	INTRON CG10132
3R	9154701	3R_9154701_SNP [dm3] 3R_13328979_SNP [dm6]	C	T	1.308e^-4	0.809	DOWNSTREAM PK2-R2 INTERGENIC
2R	8938919	2R_8938919_DEL [dm3] 2R_13051414_DEL [dm6]	GTTATT	C	1.310e^-4	0.809	INTERGENIC
2R	6784159	2R_6784159_SNP [dm3] 2R_10896654_SNP [dm6]	T	A	1.320e^-4	0.809	DOWNSTREAM CG7712 INTRON CG12942	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	9618108	X_9618108_SNP [dm3] X_9724075_SNP [dm6]	A	C	1.322e^-4	0.809	INTERGENIC
3L	24186273	3L_24186273_SNP [dm3] 3L_24193173_SNP [dm6]	A	C	1.327e^-4	0.809	INTRON Snap25
2L	3378989	2L_3378989_SNP [dm3] 2L_3378989_SNP [dm6]	A	G	1.338e^-4	0.809	DOWNSTREAM Ptpa INTERGENIC
3R	21169591	3R_21169591_SNP [dm3] 3R_25343869_SNP [dm6]	C	G	1.348e^-4	0.809	NON_SYNONYMOUS_CODING rha DOWNSTREAM tobi	TF binding site mE1_TFBS_inv
3L	17941476	3L_17941476_DEL [dm3] 3L_17948376_DEL [dm6]	GGGGG	G	1.357e^-4	0.809	UPSTREAM CR45393 INTERGENIC
3R	14334904	3R_14334904_INS [dm3] 3R_18509182_INS [dm6]	A	AC	1.362e^-4	0.809	INTRON fru
3R	17814872	3R_17814872_SNP [dm3] 3R_21989150_SNP [dm6]	A	T	1.374e^-4	0.809	INTRON Eip93F
X	11252831	X_11252831_DEL [dm3] X_11358798_DEL [dm6]	TTGCCAAGAAGACTTTTAAA...	T	1.377e^-4	0.809	UPSTREAM Pa1 DOWNSTREAM dsh INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25433835	3R_25433835_DEL [dm3] 3R_29608113_DEL [dm6]	CCCCAC	C	1.387e^-4	0.809	UPSTREAM Diedel2 INTRON alph
X	3219321	X_3219321_SNP [dm3] X_3325288_SNP [dm6]	C	G	1.392e^-4	0.809	INTRON CR44886 & 1 other
3R	19490509	3R_19490509_SNP [dm3] 3R_23664787_SNP [dm6]	G	A	1.402e^-4	0.809	INTRON CG31145
3R	16509061	3R_16509061_SNP [dm3] 3R_20683339_SNP [dm6]	C	A	1.404e^-4	0.809	INTERGENIC
3L	10440226	3L_10440226_SNP [dm3] 3L_10447126_SNP [dm6]	T	C	1.406e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	11758097	2R_11758097_SNP [dm3] 2R_15870592_SNP [dm6]	T	G	1.409e^-4	0.809	UTR_3_PRIME sli
2L	744092	2L_744092_SNP [dm3] 2L_744092_SNP [dm6]	G	A	1.416e^-4	0.809	UTR_5_PRIME Eaat2 INTRON Eaat2
3L	7409921	3L_7409921_SNP [dm3] 3L_7416821_SNP [dm6]	C	T	1.416e^-4	0.809	INTERGENIC
3R	26460981	3R_26460981_SNP [dm3] 3R_30635259_SNP [dm6]	G	A	1.419e^-4	0.809	INTERGENIC
3L	18660735	3L_18660735_SNP [dm3] 3L_18667635_SNP [dm6]	T	A	1.420e^-4	0.809	DOWNSTREAM Capr & 1 other INTRON CG42495
X	16859447	X_16859447_SNP [dm3] X_16965414_SNP [dm6]	C	G	1.423e^-4	0.809	INTRON CG9086	TF binding site BDTNP1_TFBS_twi
2L	744089	2L_744089_SNP [dm3] 2L_744089_SNP [dm6]	C	T	1.430e^-4	0.809	UTR_5_PRIME Eaat2 INTRON Eaat2
2R	15063865	2R_15063865_SNP [dm3] 2R_19176360_SNP [dm6]	C	T	1.434e^-4	0.809	INTRON CG10737
2R	8481871	2R_8481871_SNP [dm3] 2R_12594366_SNP [dm6]	C	T	1.440e^-4	0.809	UPSTREAM CR45279 DOWNSTREAM CR43909 INTRON Amph	TF binding site BDTNP1_TFBS_dl
3R	21187062	3R_21187062_SNP [dm3] 3R_25361340_SNP [dm6]	C	T	1.445e^-4	0.809	INTRON Fur1
3R	25369955	3R_25369955_SNP [dm3] 3R_29544233_SNP [dm6]	G	T	1.449e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	10470427	3L_10470427_SNP [dm3] 3L_10477327_SNP [dm6]	T	C	1.450e^-4	0.809	INTERGENIC
2L	8822901	2L_8822901_SNP [dm3] 2L_8822901_SNP [dm6]	G	A	1.453e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18765667	3R_18765667_SNP [dm3] 3R_22939945_SNP [dm6]	G	C	1.456e^-4	0.809	INTRON klg
2R	4523393	2R_4523393_SNP [dm3] 2R_8635888_SNP [dm6]	A	T	1.460e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13669631	3R_13669631_SNP [dm3] 3R_17843909_SNP [dm6]	C	T	1.478e^-4	0.809	INTRON tinc
3R	26659819	3R_26659819_SNP [dm3] 3R_30834097_SNP [dm6]	A	T	1.479e^-4	0.809	INTRON CG15544
2R	11758799	2R_11758799_SNP [dm3] 2R_15871294_SNP [dm6]	C	T	1.480e^-4	0.809	UTR_3_PRIME sli	TF binding site mE1_TFBS_cad
3R	9673226	3R_9673226_SNP [dm3] 3R_13847504_SNP [dm6]	C	G	1.486e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_cad
2R	4727083	2R_4727083_SNP [dm3] 2R_8839578_SNP [dm6]	A	T	1.489e^-4	0.809	INTRON sns
3R	12995048	3R_12995048_SNP [dm3] 3R_17169326_SNP [dm6]	T	C	1.496e^-4	0.809	INTRON Mur89F
3R	14439794	3R_14439794_SNP [dm3] 3R_18614072_SNP [dm6]	G	A	1.496e^-4	0.809	INTRON qin & 1 other
2L	11820875	2L_11820875_SNP [dm3] 2L_11820875_SNP [dm6]	C	G	1.497e^-4	0.809	INTRON Pde1c
3R	12663976	3R_12663976_SNP [dm3] 3R_16838254_SNP [dm6]	A	G	1.503e^-4	0.809	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	4078626	3R_4078626_SNP [dm3] 3R_8252904_SNP [dm6]	G	C	1.505e^-4	0.809	INTRON mtg	TF binding site mE1_TFBS_cnc
3R	4078804	3R_4078804_SNP [dm3] 3R_8253082_SNP [dm6]	T	A	1.505e^-4	0.809	INTRON mtg	TF binding site mE1_TFBS_cnc
3L	13549543	3L_13549543_SNP [dm3] 3L_13556443_SNP [dm6]	T	A	1.512e^-4	0.809	INTRON bru-3
3R	12576587	3R_12576587_SNP [dm3] 3R_16750865_SNP [dm6]	A	T	1.512e^-4	0.809	UTR_3_PRIME CG31275 INTRON bxd	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2R	6784169	2R_6784169_SNP [dm3] 2R_10896664_SNP [dm6]	A	G	1.515e^-4	0.809	DOWNSTREAM CG7712 INTRON CG12942	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14924587	3R_14924587_SNP [dm3] 3R_19098865_SNP [dm6]	G	A	1.518e^-4	0.809	INTRON CG6040
2L	3616621	2L_3616621_SNP [dm3] 2L_3616621_SNP [dm6]	A	T	1.527e^-4	0.809	EXON CR44310	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	22714572	3R_22714572_DEL [dm3] 3R_26888850_DEL [dm6]	ATGTA	A	1.528e^-4	0.809	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3437651	2L_3437651_SNP [dm3] 2L_3437651_SNP [dm6]	C	T	1.531e^-4	0.809	INTERGENIC
3L	21204342	3L_21204342_SNP [dm3] 3L_21211242_SNP [dm6]	A	C	1.533e^-4	0.809	INTRON CG10508
3L	9116513	3L_9116513_SNP [dm3] 3L_9123413_SNP [dm6]	C	T	1.536e^-4	0.809	INTRON bol	TF binding site mE1_TFBS_Ubx
3R	26615273	3R_26615273_SNP [dm3] 3R_30789551_SNP [dm6]	G	A	1.540e^-4	0.809	DOWNSTREAM wts & 1 other INTERGENIC
3L	1144042	3L_1144042_SNP [dm3] 3L_1144042_SNP [dm6]	T	C	1.545e^-4	0.809	INTRON bab2	TF binding site mE1_TFBS_cad
2L	8823017	2L_8823017_SNP [dm3] 2L_8823017_SNP [dm6]	T	C	1.545e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6699219	3R_6699219_SNP [dm3] 3R_10873497_SNP [dm6]	T	G	1.548e^-4	0.809	INTRON CG4596	TF binding site mE1_TFBS_cad
2R	14384354	2R_14384354_SNP [dm3] 2R_18496849_SNP [dm6]	T	C	1.557e^-4	0.809	UTR_5_PRIME CG30116
3R	7098727	3R_7098727_SNP [dm3] 3R_11273005_SNP [dm6]	T	C	1.559e^-4	0.809	INTRON CR31386
3R	26687265	3R_26687265_SNP [dm3] 3R_30861543_SNP [dm6]	C	T	1.559e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8560593	2R_8560593_SNP [dm3] 2R_12673088_SNP [dm6]	G	C	1.560e^-4	0.809	INTRON CG42708	TF binding site mE1_TFBS_cad
3L	9342125	3L_9342125_SNP [dm3] 3L_9349025_SNP [dm6]	C	A	1.564e^-4	0.809	UPSTREAM PGRP-LF DOWNSTREAM PGRP-LC INTERGENIC
3L	9342338	3L_9342338_SNP [dm3] 3L_9349238_SNP [dm6]	G	T	1.564e^-4	0.809	UPSTREAM PGRP-LF DOWNSTREAM PGRP-LC INTERGENIC
2R	8559428	2R_8559428_SNP [dm3] 2R_12671923_SNP [dm6]	C	T	1.568e^-4	0.809	SYNONYMOUS_CODING CG42708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15065901	2R_15065901_DEL [dm3] 2R_19178396_DEL [dm6]	AA	A	1.574e^-4	0.809	UPSTREAM hppy DOWNSTREAM CG10737 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	1117556	3L_1117556_SNP [dm3] 3L_1117556_SNP [dm6]	G	A	1.575e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9673216	3R_9673216_SNP [dm3] 3R_13847494_SNP [dm6]	T	C	1.577e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14555472	2R_14555472_SNP [dm3] 2R_18667967_SNP [dm6]	T	C	1.578e^-4	0.809	SYNONYMOUS_CODING edl
3R	26545143	3R_26545143_SNP [dm3] 3R_30719421_SNP [dm6]	C	T	1.585e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	19304839	X_19304839_SNP [dm3] X_19410806_SNP [dm6]	G	A	1.597e^-4	0.809	INTRON kek5	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	9607663	3R_9607663_SNP [dm3] 3R_13781941_SNP [dm6]	G	A	1.597e^-4	0.809	SYNONYMOUS_CODING CG9286 UPSTREAM Dip-B	TF binding site mE1_TFBS_HSA
3L	12502858	3L_12502858_SNP [dm3] 3L_12509758_SNP [dm6]	T	C	1.601e^-4	0.809	SYNONYMOUS_CODING sti
3R	17952123	3R_17952123_SNP [dm3] 3R_22126401_SNP [dm6]	C	T	1.604e^-4	0.809	SYNONYMOUS_CODING CG42390	TF binding site mE1_TFBS_cad
2R	8558980	2R_8558980_SNP [dm3] 2R_12671475_SNP [dm6]	C	T	1.608e^-4	0.809	NON_SYNONYMOUS_CODING CG42708 INTRON CG42708	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	3964169	3R_3964169_SNP [dm3] 3R_8138447_SNP [dm6]	T	A	1.610e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	26304998	3R_26304998_SNP [dm3] 3R_30479276_SNP [dm6]	C	T	1.616e^-4	0.809	SYNONYMOUS_CODING PH4alphaEFB DOWNSTREAM spdo
X	5557408	X_5557408_INS [dm3] X_5663375_INS [dm6]	T	TGTAT	1.628e^-4	0.809	UPSTREAM CG42265 EXON CR45520	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	16667711	3R_16667711_SNP [dm3] 3R_20841989_SNP [dm6]	G	C	1.635e^-4	0.809	UPSTREAM CG15695 INTERGENIC
3L	10440243	3L_10440243_SNP [dm3] 3L_10447143_SNP [dm6]	C	G	1.635e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
4	567020	4_567020_SNP [dm3] 4_546394_SNP [dm6]	T	G	1.653e^-4	0.809	NON_SYNONYMOUS_CODING Thd1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20388834	3R_20388834_SNP [dm3] 3R_24563112_SNP [dm6]	T	G	1.654e^-4	0.809	INTRON CG13624
3L	9342799	3L_9342799_SNP [dm3] 3L_9349699_SNP [dm6]	T	C	1.665e^-4	0.809	NON_SYNONYMOUS_CODING PGRP-LF
4	275243	4_275243_SNP [dm3] 4_254617_SNP [dm6]	A	C	1.665e^-4	0.809	UPSTREAM RhoGAP102A INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	12916814	2R_12916814_SNP [dm3] 2R_17029309_SNP [dm6]	G	T	1.668e^-4	0.809	INTRON RhoGEF2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	14120514	3R_14120514_INS [dm3] 3R_18294792_INS [dm6]	A	ACATA	1.676e^-4	0.809	UPSTREAM l_3_05822 INTRON l_3_05822
X	945546	X_945546_SNP [dm3] X_1051513_SNP [dm6]	A	C	1.683e^-4	0.809	UPSTREAM CG14629 INTRON CR44779
2R	15103704	2R_15103704_SNP [dm3] 2R_19216199_SNP [dm6]	G	C	1.692e^-4	0.809	INTRON hppy
4	724835	4_724835_SNP [dm3] 4_704209_SNP [dm6]	C	T	1.699e^-4	0.809	UPSTREAM ey INTRON ey	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17568775	2R_17568775_DEL [dm3] 2R_21681270_DEL [dm6]	AGATCTTAAACTCCAACCTA...	A	1.703e^-4	0.809	INTRON CG30263	TF binding site mE1_TFBS_chinmo
2L	3616616	2L_3616616_SNP [dm3] 2L_3616616_SNP [dm6]	G	A	1.710e^-4	0.809	EXON CR44310	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	12522499	2L_12522499_SNP [dm3] 2L_12522499_SNP [dm6]	C	T	1.712e^-4	0.809	INTRON bun	TF binding site BDTNP1_TFBS_dl
2L	5875090	2L_5875090_DEL [dm3] 2L_5875090_DEL [dm6]	GAG	G	1.717e^-4	0.809	INTRON rau
3R	26177869	3R_26177869_SNP [dm3] 3R_30352147_SNP [dm6]	A	C	1.721e^-4	0.809	INTRON hdc
3R	26177870	3R_26177870_SNP [dm3] 3R_30352148_SNP [dm6]	C	T	1.721e^-4	0.809	INTRON hdc
3L	1135580	3L_1135580_SNP [dm3] 3L_1135580_SNP [dm6]	T	C	1.721e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_inv
3R	14924511	3R_14924511_SNP [dm3] 3R_19098789_SNP [dm6]	T	A	1.721e^-4	0.809	INTRON CG6040
2L	1411126	2L_1411126_INS [dm3] 2L_1411126_INS [dm6]	G	GGTAGG	1.721e^-4	0.809	INTRON lea	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	7802870	2R_7802870_SNP [dm3] 2R_11915365_SNP [dm6]	C	T	1.724e^-4	0.809	INTERGENIC
3R	21023250	3R_21023250_SNP [dm3] 3R_25197528_SNP [dm6]	G	A	1.730e^-4	0.809	DOWNSTREAM CG13653 & 1 other INTERGENIC
3R	21023276	3R_21023276_SNP [dm3] 3R_25197554_SNP [dm6]	G	A	1.730e^-4	0.809	DOWNSTREAM Cad96Ca INTERGENIC
2R	17263268	2R_17263268_SNP [dm3] 2R_21375763_SNP [dm6]	A	G	1.733e^-4	0.809	INTRON cv-2
3R	14904312	3R_14904312_SNP [dm3] 3R_19078590_SNP [dm6]	G	C	1.751e^-4	0.809	INTRON cdi
2L	1412947	2L_1412947_SNP [dm3] 2L_1412947_SNP [dm6]	C	T	1.758e^-4	0.809	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	9587811	3R_9587811_SNP [dm3] 3R_13762089_SNP [dm6]	A	G	1.763e^-4	0.809	UTR_3_PRIME CG34383 DOWNSTREAM CG34383 INTRON CG34383
3L	17590374	3L_17590374_SNP [dm3] 3L_17597274_SNP [dm6]	T	G	1.772e^-4	0.809	INTRON Eip74EF	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
2L	7551560	2L_7551560_SNP [dm3] 2L_7551560_SNP [dm6]	T	G	1.772e^-4	0.809	INTRON RapGAP1
X	8760405	X_8760405_SNP [dm3] X_8866372_SNP [dm6]	T	C	1.788e^-4	0.809	INTRON CG12075
3R	18646687	3R_18646687_SNP [dm3] 3R_22820965_SNP [dm6]	A	T	1.790e^-4	0.809	INTERGENIC
3R	13669622	3R_13669622_SNP [dm3] 3R_17843900_SNP [dm6]	C	T	1.794e^-4	0.809	INTRON tinc
3R	26431452	3R_26431452_SNP [dm3] 3R_30605730_SNP [dm6]	T	G	1.801e^-4	0.809	SYNONYMOUS_CODING PH4alphaNE3 UPSTREAM CG31016
2L	2121600	2L_2121600_SNP [dm3] 2L_2121600_SNP [dm6]	C	A	1.803e^-4	0.809	INTERGENIC
2L	11820878	2L_11820878_SNP [dm3] 2L_11820878_SNP [dm6]	G	T	1.806e^-4	0.809	INTRON Pde1c
2R	6784154	2R_6784154_SNP [dm3] 2R_10896649_SNP [dm6]	C	A	1.812e^-4	0.809	DOWNSTREAM CG7712 INTRON CG12942	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15279809	2L_15279809_SNP [dm3] 2L_15279809_SNP [dm6]	C	T	1.818e^-4	0.809	UPSTREAM CR45349 DOWNSTREAM CR43682 INTERGENIC
2L	17883963	2L_17883963_INS [dm3] 2L_17883963_INS [dm6]	T	TGAACAAA	1.834e^-4	0.809	INTERGENIC
3R	16885832	3R_16885832_SNP [dm3] 3R_21060110_SNP [dm6]	T	G	1.835e^-4	0.809	UTR_5_PRIME Mvl INTRON Mvl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	15787487	3L_15787487_INS [dm3] 3L_15794387_INS [dm6]	T	TCT	1.836e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	16490260	3R_16490260_SNP [dm3] 3R_20664538_SNP [dm6]	C	T	1.838e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10312613	3R_10312613_SNP [dm3] 3R_14486891_SNP [dm6]	G	C	1.846e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	21010598	3R_21010598_SNP [dm3] 3R_25184876_SNP [dm6]	G	T	1.852e^-4	0.809	START_GAINED dan UTR_5_PRIME dan UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13359206	3R_13359206_SNP [dm3] 3R_17533484_SNP [dm6]	T	A	1.857e^-4	0.809	INTRON CG5823
3R	13359307	3R_13359307_SNP [dm3] 3R_17533585_SNP [dm6]	T	G	1.857e^-4	0.809	INTRON CG5823
X	4279732	X_4279732_SNP [dm3] X_4385699_SNP [dm6]	G	A	1.858e^-4	0.809	INTERGENIC	regulatory region REDfly_CRMs
3L	15534934	3L_15534934_SNP [dm3] 3L_15541834_SNP [dm6]	C	A	1.868e^-4	0.809	INTRON CrebA
3L	13549548	3L_13549548_SNP [dm3] 3L_13556448_SNP [dm6]	T	C	1.869e^-4	0.809	INTRON bru-3
3R	11178290	3R_11178290_SNP [dm3] 3R_15352568_SNP [dm6]	T	C	1.871e^-4	0.809	SYNONYMOUS_CODING CG5038	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19766589	X_19766589_SNP [dm3] X_19872556_SNP [dm6]	G	T	1.873e^-4	0.809	INTRON Hers
3R	6680843	3R_6680843_DEL [dm3] 3R_10855121_DEL [dm6]	GCGACTTTTAAGACATTCG...	A	1.874e^-4	0.809	UPSTREAM CG6567 INTRON CG4511	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	1400682	2L_1400682_SNP [dm3] 2L_1400682_SNP [dm6]	C	A	1.884e^-4	0.809	INTRON lea	TF binding site mE1_TFBS_HSA
2L	1400748	2L_1400748_SNP [dm3] 2L_1400748_SNP [dm6]	A	G	1.884e^-4	0.809	INTRON lea
2L	1403807	2L_1403807_SNP [dm3] 2L_1403807_SNP [dm6]	A	G	1.884e^-4	0.809	INTRON lea	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	19651596	3L_19651596_SNP [dm3] 3L_19658496_SNP [dm6]	G	A	1.884e^-4	0.809	INTRON tey
3L	19254027	3L_19254027_SNP [dm3] 3L_19260927_SNP [dm6]	A	G	1.886e^-4	0.809	UPSTREAM Bet1 & 1 other DOWNSTREAM CR45210 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	14329989	2L_14329989_SNP [dm3] 2L_14329989_SNP [dm6]	T	C	1.890e^-4	0.809	SYNONYMOUS_CODING ms_2_34Fe	TF binding site mE1_TFBS_cad
3R	20497967	3R_20497967_DEL [dm3] 3R_24672245_DEL [dm6]	TT	T	1.891e^-4	0.809	INTRON slo
3L	13666747	3L_13666747_SNP [dm3] 3L_13673647_SNP [dm6]	T	C	1.896e^-4	0.809	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13668147	3L_13668147_SNP [dm3] 3L_13675047_SNP [dm6]	T	C	1.904e^-4	0.809	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3616579	2L_3616579_DEL [dm3] 2L_3616579_DEL [dm6]	AGTAAAG	A	1.905e^-4	0.809	EXON CR44310	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	11279823	3R_11279823_SNP [dm3] 3R_15454101_SNP [dm6]	A	G	1.909e^-4	0.809	INTRON AdamTS-A
3L	11423884	3L_11423884_SNP [dm3] 3L_11430784_SNP [dm6]	T	G	1.910e^-4	0.809	INTERGENIC
3R	8114242	3R_8114242_SNP [dm3] 3R_12288520_SNP [dm6]	T	C	1.913e^-4	0.809	INTRON svp	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	7836767	2R_7836767_SNP [dm3] 2R_11949262_SNP [dm6]	C	A	1.914e^-4	0.809	INTRON CG13188
3R	10294011	3R_10294011_SNP [dm3] 3R_14468289_SNP [dm6]	T	A	1.922e^-4	0.809	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26288134	3R_26288134_SNP [dm3] 3R_30462412_SNP [dm6]	G	T	1.924e^-4	0.809	INTRON CDase	TF binding site BDTNP1_TFBS_da
2R	8843738	2R_8843738_SNP [dm3] 2R_12956233_SNP [dm6]	T	G	1.928e^-4	0.809	DOWNSTREAM CG13321 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	8843773	2R_8843773_SNP [dm3] 2R_12956268_SNP [dm6]	G	A	1.928e^-4	0.809	DOWNSTREAM CG13321 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	8843804	2R_8843804_SNP [dm3] 2R_12956299_SNP [dm6]	A	G	1.928e^-4	0.809	DOWNSTREAM CG13321 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	8843880	2R_8843880_SNP [dm3] 2R_12956375_SNP [dm6]	C	T	1.928e^-4	0.809	DOWNSTREAM CG13321 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	15787529	3L_15787529_SNP [dm3] 3L_15794429_SNP [dm6]	T	A	1.933e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	5482695	3L_5482695_DEL [dm3] 3L_5489595_DEL [dm6]	CC	C	1.933e^-4	0.809	INTERGENIC
2R	7563809	2R_7563809_SNP [dm3] 2R_11676304_SNP [dm6]	G	A	1.936e^-4	0.809	SYNONYMOUS_CODING Tret1-2 INTRON Roc2	TF binding site mE1_TFBS_cad
3L	8352395	3L_8352395_SNP [dm3] 3L_8359295_SNP [dm6]	G	T	1.939e^-4	0.809	UPSTREAM Idh INTRON Idh	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	16381279	2L_16381279_SNP [dm3] 2L_16381279_SNP [dm6]	G	A	1.942e^-4	0.809	INTERGENIC
3R	22663423	3R_22663423_SNP [dm3] 3R_26837701_SNP [dm6]	C	T	1.944e^-4	0.809	INTRON Tl
3L	9342351	3L_9342351_SNP [dm3] 3L_9349251_SNP [dm6]	A	T	1.944e^-4	0.809	UPSTREAM PGRP-LF DOWNSTREAM PGRP-LC INTERGENIC
X	5558737	X_5558737_DEL [dm3] X_5664704_DEL [dm6]	GG	G	1.947e^-4	0.809	UTR_3_PRIME Sirt4 EXON CR45520	TF binding site mE1_TFBS_sens
2R	11088867	2R_11088867_SNP [dm3] 2R_15201362_SNP [dm6]	T	C	1.952e^-4	0.809	UTR_5_PRIME CG11807 UPSTREAM CG11807 & 2 others INTRON CG11807	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15046494	2R_15046494_SNP [dm3] 2R_19158989_SNP [dm6]	C	T	1.956e^-4	0.809	SYNONYMOUS_CODING ena	TF binding site mE1_TFBS_inv
X	12453154	X_12453154_SNP [dm3] X_12559121_SNP [dm6]	C	T	1.962e^-4	0.809	INTRON CG43921
3R	20407167	3R_20407167_SNP [dm3] 3R_24581445_SNP [dm6]	A	T	1.982e^-4	0.809	INTRON CG13624	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	994571	3L_994571_SNP [dm3] 3L_994571_SNP [dm6]	C	A	1.984e^-4	0.809	SYNONYMOUS_CODING CG12038 DOWNSTREAM Glut1	TF binding site mE1_TFBS_cad
3R	16857218	3R_16857218_SNP [dm3] 3R_21031496_SNP [dm6]	T	C	1.989e^-4	0.809	SYNONYMOUS_CODING Dhc93AB
X	14810774	X_14810774_DEL [dm3] X_14916741_DEL [dm6]	TCTTAAA	T	1.994e^-4	0.809	DOWNSTREAM Eo INTRON Flo2
2L	1581673	2L_1581673_SNP [dm3] 2L_1581673_SNP [dm6]	G	A	1.994e^-4	0.809	INTRON haf
3R	3767381	3R_3767381_SNP [dm3] 3R_7941659_SNP [dm6]	A	G	1.999e^-4	0.809	INTRON dsx
X	910220	X_910220_SNP [dm3] X_1016187_SNP [dm6]	G	A	2.006e^-4	0.809	SYNONYMOUS_CODING CG11638 INTRON su_w[a]_
2R	11920728	2R_11920728_INS [dm3] 2R_16033223_INS [dm6]	A	AG	2.007e^-4	0.809	INTRON SP2353
3L	16510919	3L_16510919_SNP [dm3] 3L_16517819_SNP [dm6]	T	A	2.013e^-4	0.809	INTRON CG43373
3L	16510920	3L_16510920_SNP [dm3] 3L_16517820_SNP [dm6]	A	T	2.013e^-4	0.809	INTRON CG43373
3L	16510923	3L_16510923_SNP [dm3] 3L_16517823_SNP [dm6]	G	A	2.013e^-4	0.809	INTRON CG43373
3L	16510926	3L_16510926_SNP [dm3] 3L_16517826_SNP [dm6]	A	T	2.013e^-4	0.809	INTRON CG43373
2L	4203691	2L_4203691_SNP [dm3] 2L_4203691_SNP [dm6]	T	G	2.016e^-4	0.809	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
3L	7749028	3L_7749028_SNP [dm3] 3L_7755928_SNP [dm6]	T	A	2.022e^-4	0.809	UPSTREAM CG32373 DOWNSTREAM CG7409 INTRON CG32373
2L	2322664	2L_2322664_SNP [dm3] 2L_2322664_SNP [dm6]	G	T	2.025e^-4	0.809	INTRON CG9967 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	16463816	3L_16463816_SNP [dm3] 3L_16470716_SNP [dm6]	G	A	2.027e^-4	0.809	UTR_3_PRIME aos INTRON CG33158
3R	26673125	3R_26673125_SNP [dm3] 3R_30847403_SNP [dm6]	C	T	2.031e^-4	0.809	INTERGENIC
3R	26673177	3R_26673177_SNP [dm3] 3R_30847455_SNP [dm6]	A	G	2.031e^-4	0.809	INTERGENIC
3R	22663340	3R_22663340_SNP [dm3] 3R_26837618_SNP [dm6]	T	G	2.050e^-4	0.809	INTRON Tl
3L	4049156	3L_4049156_SNP [dm3] 3L_4049156_SNP [dm6]	C	T	2.050e^-4	0.809	INTRON CG1136
X	16859448	X_16859448_SNP [dm3] X_16965415_SNP [dm6]	C	T	2.050e^-4	0.809	INTRON CG9086	TF binding site BDTNP1_TFBS_twi
2R	7836716	2R_7836716_INS [dm3] 2R_11949211_INS [dm6]	T	TCTCTAAATGT...	2.051e^-4	0.809	INTRON CG13188
2R	7836722	2R_7836722_SNP [dm3] 2R_11949217_SNP [dm6]	A	T	2.051e^-4	0.809	INTRON CG13188
2R	8559962	2R_8559962_SNP [dm3] 2R_12672457_SNP [dm6]	C	A	2.052e^-4	0.809	SYNONYMOUS_CODING CG42708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21012159	3R_21012159_SNP [dm3] 3R_25186437_SNP [dm6]	C	A	2.055e^-4	0.809	INTRON lobo & 1 other
3L	7434864	3L_7434864_SNP [dm3] 3L_7441764_SNP [dm6]	A	G	2.058e^-4	0.809	INTRON CG42458
3R	10503659	3R_10503659_SNP [dm3] 3R_14677937_SNP [dm6]	C	T	2.064e^-4	0.809	INTRON Meltrin	TF binding site BDTNP1_TFBS_da
3R	13493244	3R_13493244_SNP [dm3] 3R_17667522_SNP [dm6]	C	T	2.064e^-4	0.809	UPSTREAM CR45045 & 1 other INTRON CG14322	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
3L	15782513	3L_15782513_SNP [dm3] 3L_15789413_SNP [dm6]	G	A	2.066e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	17941503	3L_17941503_SNP [dm3] 3L_17948403_SNP [dm6]	G	T	2.080e^-4	0.809	UPSTREAM CR45393 INTERGENIC
3L	1135738	3L_1135738_SNP [dm3] 3L_1135738_SNP [dm6]	A	T	2.081e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_inv
2R	8449031	2R_8449031_INS [dm3] 2R_12561526_INS [dm6]	T	TT	2.082e^-4	0.809	UPSTREAM CG30056 INTRON fra
3R	18705033	3R_18705033_SNP [dm3] 3R_22879311_SNP [dm6]	G	A	2.083e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	13938276	3R_13938276_SNP [dm3] 3R_18112554_SNP [dm6]	A	T	2.091e^-4	0.81	INTRON sr	TF binding site mE1_TFBS_HSA
2L	20574030	2L_20574030_SNP [dm3] 2L_20574030_SNP [dm6]	A	T	2.097e^-4	0.81	INTRON CR45347	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1904149	2L_1904149_SNP [dm3] 2L_1904149_SNP [dm6]	C	T	2.100e^-4	0.81	INTRON CG7337
X	13254760	X_13254760_DEL [dm3] X_13360727_DEL [dm6]	AAAAAA	A	2.106e^-4	0.81	INTRON Syt12
X	12997526	X_12997526_DEL [dm3] X_13103493_DEL [dm6]	TT	T	2.108e^-4	0.81	INTRON CG43313
2R	15986279	2R_15986279_SNP [dm3] 2R_20098774_SNP [dm6]	C	G	2.113e^-4	0.811	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	12207510	X_12207510_SNP [dm3] X_12313477_SNP [dm6]	G	A	2.121e^-4	0.811	INTRON Ten-a
2R	8564327	2R_8564327_SNP [dm3] 2R_12676822_SNP [dm6]	A	G	2.127e^-4	0.811	UPSTREAM CG42708 INTRON CG42708
X	12845870	X_12845870_SNP [dm3] X_12951837_SNP [dm6]	A	T	2.128e^-4	0.811	INTRON hec
X	4066026	X_4066026_SNP [dm3] X_4171993_SNP [dm6]	C	G	2.141e^-4	0.814	INTRON Fas2
2R	15342467	2R_15342467_SNP [dm3] 2R_19454962_SNP [dm6]	T	C	2.149e^-4	0.814	NON_SYNONYMOUS_CODING CG7744	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15514860	2R_15514860_SNP [dm3] 2R_19627355_SNP [dm6]	C	T	2.150e^-4	0.814	INTRON sm
2R	4523540	2R_4523540_SNP [dm3] 2R_8636035_SNP [dm6]	C	G	2.152e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18889623	2R_18889623_SNP [dm3] 2R_23002100_SNP [dm6]	A	G	2.158e^-4	0.814	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	1401712	2L_1401712_SNP [dm3] 2L_1401712_SNP [dm6]	T	A	2.160e^-4	0.814	INTRON lea	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	4199995	2R_4199995_SNP [dm3] 2R_8312490_SNP [dm6]	C	T	2.166e^-4	0.814	DOWNSTREAM CR44450 INTERGENIC
3R	22663263	3R_22663263_SNP [dm3] 3R_26837541_SNP [dm6]	C	G	2.187e^-4	0.82	INTRON Tl
2R	15514883	2R_15514883_DEL [dm3] 2R_19627378_DEL [dm6]	AATGTAATTCATAAT...	A	2.209e^-4	0.824	INTRON sm
X	13005126	X_13005126_SNP [dm3] X_13111093_SNP [dm6]	T	C	2.214e^-4	0.824	INTRON CG43313	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	5409730	3R_5409730_SNP [dm3] 3R_9584008_SNP [dm6]	T	G	2.216e^-4	0.824	SYNONYMOUS_CODING CG8301 UPSTREAM CG33654	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25119173	3R_25119173_SNP [dm3] 3R_29293451_SNP [dm6]	G	T	2.217e^-4	0.824	DOWNSTREAM CG14506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	9668064	3R_9668064_SNP [dm3] 3R_13842342_SNP [dm6]	C	A	2.231e^-4	0.824	INTERGENIC
3R	16661339	3R_16661339_SNP [dm3] 3R_20835617_SNP [dm6]	T	A	2.232e^-4	0.824	INTRON Synd
2R	17568726	2R_17568726_SNP [dm3] 2R_21681221_SNP [dm6]	C	G	2.233e^-4	0.824	INTRON CG30263	TF binding site mE1_TFBS_chinmo
2R	17568728	2R_17568728_SNP [dm3] 2R_21681223_SNP [dm6]	T	C	2.233e^-4	0.824	INTRON CG30263	TF binding site mE1_TFBS_chinmo
2R	14681031	2R_14681031_SNP [dm3] 2R_18793526_SNP [dm6]	C	T	2.240e^-4	0.824	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_chinmo
3R	18931622	3R_18931622_SNP [dm3] 3R_23105900_SNP [dm6]	G	A	2.241e^-4	0.824	INTRON CG13830
2L	11002440	2L_11002440_SNP [dm3] 2L_11002440_SNP [dm6]	C	A	2.264e^-4	0.831	SYNONYMOUS_CODING lectin-33A UPSTREAM aub DOWNSTREAM RpL9
2R	8590203	2R_8590203_SNP [dm3] 2R_12702698_SNP [dm6]	G	A	2.276e^-4	0.833	INTERGENIC
3R	3161144	3R_3161144_SNP [dm3] 3R_7335422_SNP [dm6]	A	C	2.281e^-4	0.834	INTERGENIC
2L	6671192	2L_6671192_DEL [dm3] 2L_6671192_DEL [dm6]	AA	A	2.305e^-4	0.84	UTR_3_PRIME Spn27A DOWNSTREAM Spn27A INTRON cup & 1 other
2L	13970977	2L_13970977_SNP [dm3] 2L_13970977_SNP [dm6]	T	C	2.309e^-4	0.84	INTRON NimB5
2L	7546809	2L_7546809_SNP [dm3] 2L_7546809_SNP [dm6]	A	G	2.319e^-4	0.84	INTRON RapGAP1
2L	7558143	2L_7558143_SNP [dm3] 2L_7558143_SNP [dm6]	C	G	2.319e^-4	0.84	INTRON RapGAP1
3L	14490442	3L_14490442_SNP [dm3] 3L_14497342_SNP [dm6]	G	A	2.322e^-4	0.84	INTRON bbg
3R	14380884	3R_14380884_SNP [dm3] 3R_18555162_SNP [dm6]	T	C	2.325e^-4	0.84	INTERGENIC
2R	14009311	2R_14009311_SNP [dm3] 2R_18121806_SNP [dm6]	A	G	2.335e^-4	0.841	SYNONYMOUS_CODING stau	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14843968	X_14843968_SNP [dm3] X_14949935_SNP [dm6]	G	T	2.342e^-4	0.841	INTRON pdgy
X	3219320	X_3219320_SNP [dm3] X_3325287_SNP [dm6]	G	T	2.343e^-4	0.841	INTRON CR44886 & 1 other
3R	6680935	3R_6680935_SNP [dm3] 3R_10855213_SNP [dm6]	T	C	2.348e^-4	0.842	UPSTREAM CG6567 INTRON CG4511	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	2122419	3L_2122419_SNP [dm3] 3L_2122419_SNP [dm6]	C	T	2.364e^-4	0.843	DOWNSTREAM zormin INTRON zormin
3L	2122439	3L_2122439_SNP [dm3] 3L_2122439_SNP [dm6]	A	T	2.364e^-4	0.843	DOWNSTREAM zormin INTRON zormin
3L	2122440	3L_2122440_SNP [dm3] 3L_2122440_SNP [dm6]	T	C	2.364e^-4	0.843	DOWNSTREAM zormin INTRON zormin
2L	1579909	2L_1579909_SNP [dm3] 2L_1579909_SNP [dm6]	C	G	2.372e^-4	0.844	INTRON haf
3L	14045000	3L_14045000_SNP [dm3] 3L_14051900_SNP [dm6]	A	G	2.379e^-4	0.844	NON_SYNONYMOUS_CODING CG6833 DOWNSTREAM CG13484	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2327115	X_2327115_SNP [dm3] X_2433082_SNP [dm6]	T	G	2.382e^-4	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	19050682	2R_19050682_SNP [dm3] 2R_23163159_SNP [dm6]	T	A	2.397e^-4	0.847	UTR_3_PRIME CG34371
X	8232440	X_8232440_SNP [dm3] X_8338407_SNP [dm6]	G	T	2.400e^-4	0.847	INTRON nAChRalpha3	TF binding site mE1_TFBS_run
2L	1402500	2L_1402500_SNP [dm3] 2L_1402500_SNP [dm6]	T	C	2.421e^-4	0.847	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13254758	X_13254758_SNP [dm3] X_13360725_SNP [dm6]	C	G	2.421e^-4	0.847	INTRON Syt12
X	6100471	X_6100471_SNP [dm3] X_6206438_SNP [dm6]	G	A	2.424e^-4	0.847	INTERGENIC
3R	19307420	3R_19307420_SNP [dm3] 3R_23481698_SNP [dm6]	T	A	2.431e^-4	0.847	UPSTREAM Ir94f INTERGENIC
2R	17568736	2R_17568736_SNP [dm3] 2R_21681231_SNP [dm6]	G	T	2.432e^-4	0.847	INTRON CG30263	TF binding site mE1_TFBS_chinmo
3L	10901949	3L_10901949_SNP [dm3] 3L_10908849_SNP [dm6]	C	T	2.433e^-4	0.847	INTERGENIC
3R	19490727	3R_19490727_DEL [dm3] 3R_23665005_DEL [dm6]	AC	A	2.445e^-4	0.847	INTRON CG31145
2L	7107632	2L_7107632_SNP [dm3] 2L_7107632_SNP [dm6]	G	C	2.448e^-4	0.847	INTRON Pvf3
2L	9459303	2L_9459303_SNP [dm3] 2L_9459303_SNP [dm6]	A	G	2.450e^-4	0.847	INTRON numb	TF binding site BDTNP1_TFBS_dl
3L	8413630	3L_8413630_SNP [dm3] 3L_8420530_SNP [dm6]	T	A	2.466e^-4	0.847	INTRON CG32354
3R	26615272	3R_26615272_SNP [dm3] 3R_30789550_SNP [dm6]	G	A	2.468e^-4	0.847	DOWNSTREAM wts & 1 other INTERGENIC
3L	9431925	3L_9431925_SNP [dm3] 3L_9438825_SNP [dm6]	G	A	2.471e^-4	0.847	UTR_3_PRIME Bet3 DOWNSTREAM MTF-1 INTRON MTF-1
3L	12291070	3L_12291070_SNP [dm3] 3L_12297970_SNP [dm6]	G	A	2.476e^-4	0.847	INTERGENIC	TF binding site mE1_TFBS_cad
3L	8413548	3L_8413548_SNP [dm3] 3L_8420448_SNP [dm6]	C	T	2.479e^-4	0.847	INTRON CG32354
3L	8413553	3L_8413553_DEL [dm3] 3L_8420453_DEL [dm6]	AG	A	2.479e^-4	0.847	INTRON CG32354
3L	8413556	3L_8413556_INS [dm3] 3L_8420456_INS [dm6]	A	ATTT	2.479e^-4	0.847	INTRON CG32354
3L	8413558	3L_8413558_INS [dm3] 3L_8420458_INS [dm6]	G	GTTTTTT	2.479e^-4	0.847	INTRON CG32354
2R	17768587	2R_17768587_SNP [dm3] 2R_21881082_SNP [dm6]	C	T	2.480e^-4	0.847	DOWNSTREAM PpN58A INTRON Fili
X	11252787	X_11252787_SNP [dm3] X_11358754_SNP [dm6]	T	C	2.502e^-4	0.852	UPSTREAM Pa1 DOWNSTREAM dsh INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21356626	X_21356626_DEL [dm3] X_21485599_DEL [dm6]	GG	G	2.509e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16489767	3R_16489767_SNP [dm3] 3R_20664045_SNP [dm6]	T	C	2.521e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	8563351	2R_8563351_SNP [dm3] 2R_12675846_SNP [dm6]	C	A	2.524e^-4	0.852	UPSTREAM CG42708 INTRON CG42708	TF binding site mE1_TFBS_inv
3L	19651575	3L_19651575_SNP [dm3] 3L_19658475_SNP [dm6]	A	T	2.529e^-4	0.852	INTRON tey
2L	6352354	2L_6352354_SNP [dm3] 2L_6352354_SNP [dm6]	T	A	2.537e^-4	0.852	SYNONYMOUS_CODING ppk7	TF binding site mE1_TFBS_cnc
3R	23986548	3R_23986548_SNP [dm3] 3R_28160826_SNP [dm6]	T	G	2.543e^-4	0.852	INTRON CG34354
2L	13951974	2L_13951974_SNP [dm3] 2L_13951974_SNP [dm6]	C	T	2.549e^-4	0.852	INTRON Ance-3
3R	19490383	3R_19490383_SNP [dm3] 3R_23664661_SNP [dm6]	G	A	2.559e^-4	0.852	INTRON CG31145
3L	17675160	3L_17675160_SNP [dm3] 3L_17682060_SNP [dm6]	T	A	2.560e^-4	0.852	INTRON CG34251
2R	20184847	2R_20184847_SNP [dm3] 2R_24297324_SNP [dm6]	A	G	2.562e^-4	0.852	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16839287	2R_16839287_SNP [dm3] 2R_20951782_SNP [dm6]	A	G	2.565e^-4	0.852	DOWNSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	3295341	3L_3295341_SNP [dm3] 3L_3295341_SNP [dm6]	C	T	2.568e^-4	0.852	INTRON CG12009
3L	14291013	3L_14291013_SNP [dm3] 3L_14297913_SNP [dm6]	C	T	2.571e^-4	0.852	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2R	7359051	2R_7359051_SNP [dm3] 2R_11471546_SNP [dm6]	T	A	2.575e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8593777	2R_8593777_SNP [dm3] 2R_12706272_SNP [dm6]	G	A	2.590e^-4	0.852	INTRON CG42663	TF binding site BDTNP1_TFBS_dl
3R	26283942	3R_26283942_SNP [dm3] 3R_30458220_SNP [dm6]	C	G	2.591e^-4	0.852	INTRON CG2224	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13138379	2R_13138379_SNP [dm3] 2R_17250874_SNP [dm6]	T	A	2.592e^-4	0.852	INTRON mbl
3L	4616002	3L_4616002_INS [dm3] 3L_4616002_INS [dm6]	A	AA	2.596e^-4	0.852	INTRON Src64B
3L	6742194	3L_6742194_SNP [dm3] 3L_6749094_SNP [dm6]	G	A	2.597e^-4	0.852	NON_SYNONYMOUS_CODING velo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15787589	3L_15787589_SNP [dm3] 3L_15794489_SNP [dm6]	C	T	2.598e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	9154711	3R_9154711_SNP [dm3] 3R_13328989_SNP [dm6]	T	C	2.600e^-4	0.852	DOWNSTREAM PK2-R2 INTERGENIC
2R	12354231	2R_12354231_SNP [dm3] 2R_16466726_SNP [dm6]	G	A	2.608e^-4	0.852	SYNONYMOUS_CODING CheB53a
X	9201625	X_9201625_INS [dm3] X_9307592_INS [dm6]	A	ATGA	2.613e^-4	0.852	INTERGENIC
3L	12716233	3L_12716233_SNP [dm3] 3L_12723133_SNP [dm6]	T	A	2.615e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16508942	3R_16508942_SNP [dm3] 3R_20683220_SNP [dm6]	C	G	2.621e^-4	0.852	INTERGENIC
X	12997504	X_12997504_SNP [dm3] X_13103471_SNP [dm6]	A	T	2.631e^-4	0.852	INTRON CG43313
X	11110232	X_11110232_SNP [dm3] X_11216199_SNP [dm6]	C	T	2.639e^-4	0.852	INTERGENIC
3L	4435609	3L_4435609_SNP [dm3] 3L_4435609_SNP [dm6]	C	T	2.643e^-4	0.852	UTR_3_PRIME nAChRbeta1
2L	744107	2L_744107_SNP [dm3] 2L_744107_SNP [dm6]	T	C	2.647e^-4	0.852	UTR_5_PRIME Eaat2 INTRON Eaat2
3L	10451501	3L_10451501_SNP [dm3] 3L_10458401_SNP [dm6]	C	A	2.650e^-4	0.852	DOWNSTREAM Gem3 INTERGENIC
3R	6699218	3R_6699218_SNP [dm3] 3R_10873496_SNP [dm6]	A	G	2.654e^-4	0.852	INTRON CG4596	TF binding site mE1_TFBS_cad
X	7734259	X_7734259_SNP [dm3] X_7840226_SNP [dm6]	T	C	2.657e^-4	0.852	INTRON CG1402
X	7734261	X_7734261_SNP [dm3] X_7840228_SNP [dm6]	A	T	2.657e^-4	0.852	INTRON CG1402
3R	23206746	3R_23206746_SNP [dm3] 3R_27381024_SNP [dm6]	A	T	2.662e^-4	0.852	NON_SYNONYMOUS_CODING side UTR_3_PRIME side INTRON side
2L	2284994	2L_2284994_SNP [dm3] 2L_2284994_SNP [dm6]	G	A	2.663e^-4	0.852	UPSTREAM CG4271 DOWNSTREAM CG31681 EXON CR43754
3R	9587909	3R_9587909_SNP [dm3] 3R_13762187_SNP [dm6]	G	A	2.667e^-4	0.852	UTR_3_PRIME CG34383 DOWNSTREAM CG34383 INTRON CG34383
3L	2921122	3L_2921122_SNP [dm3] 3L_2921122_SNP [dm6]	T	C	2.679e^-4	0.855	INTRON Shab
3R	26954580	3R_26954580_SNP [dm3] 3R_31128858_SNP [dm6]	C	T	2.685e^-4	0.855	NON_SYNONYMOUS_CODING CG15556
3L	6455444	3L_6455444_SNP [dm3] 3L_6462344_SNP [dm6]	T	A	2.706e^-4	0.859	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	6455474	3L_6455474_INS [dm3] 3L_6462374_INS [dm6]	A	AA	2.706e^-4	0.859	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	8584175	2R_8584175_SNP [dm3] 2R_12696670_SNP [dm6]	G	A	2.712e^-4	0.859	INTERGENIC
3R	26630839	3R_26630839_SNP [dm3] 3R_30805117_SNP [dm6]	A	G	2.725e^-4	0.862	INTRON wts	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8564624	2R_8564624_MNP [dm3] 2R_12677119_MNP [dm6]	CCC	GAA	2.737e^-4	0.864	UPSTREAM CG42708 INTRON CG42708
3L	5438622	3L_5438622_SNP [dm3] 3L_5445522_SNP [dm6]	T	C	2.741e^-4	0.864	INTERGENIC
3R	26600035	3R_26600035_SNP [dm3] 3R_30774313_SNP [dm6]	C	T	2.745e^-4	0.864	SYNONYMOUS_CODING zfh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11756355	2R_11756355_DEL [dm3] 2R_15868850_DEL [dm6]	GG	G	2.780e^-4	0.872	DOWNSTREAM sli INTRON Rif1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	1403969	2L_1403969_SNP [dm3] 2L_1403969_SNP [dm6]	C	T	2.781e^-4	0.872	INTRON lea	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
3L	12064679	3L_12064679_SNP [dm3] 3L_12071579_SNP [dm6]	A	G	2.789e^-4	0.873	SPLICE_SITE_REGION Sema-5c INTRON Sema-5c	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20339876	3R_20339876_SNP [dm3] 3R_24514154_SNP [dm6]	G	A	2.819e^-4	0.88	SYNONYMOUS_CODING nAChRbeta2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3R	19153753	3R_19153753_SNP [dm3] 3R_23328031_SNP [dm6]	A	C	2.828e^-4	0.88	INTRON pnt
2L	7218873	2L_7218873_SNP [dm3] 2L_7218873_SNP [dm6]	T	C	2.834e^-4	0.88	INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9333011	2R_9333011_SNP [dm3] 2R_13445506_SNP [dm6]	C	A	2.835e^-4	0.88	UPSTREAM cnn DOWNSTREAM CG30062 INTRON cnn
2R	9333053	2R_9333053_SNP [dm3] 2R_13445548_SNP [dm6]	T	C	2.835e^-4	0.88	SPLICE_SITE_REGION cnn SYNONYMOUS_CODING cnn UPSTREAM cnn DOWNSTREAM CG30062
2R	19163159	2R_19163159_INS [dm3] 2R_23275636_INS [dm6]	A	AA	2.846e^-4	0.882	UPSTREAM ord INTERGENIC
3R	7128508	3R_7128508_SNP [dm3] 3R_11302786_SNP [dm6]	G	A	2.854e^-4	0.882	INTRON CR31386	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	14850752	2R_14850752_SNP [dm3] 2R_18963247_SNP [dm6]	T	A	2.855e^-4	0.882	INTERGENIC
2L	10207889	2L_10207889_SNP [dm3] 2L_10207889_SNP [dm6]	T	C	2.865e^-4	0.882	UPSTREAM CG5734 & 1 other INTRON CG5731
2L	10207907	2L_10207907_SNP [dm3] 2L_10207907_SNP [dm6]	T	C	2.865e^-4	0.882	UPSTREAM CG5734 & 1 other INTRON CG5731
X	3822303	X_3822303_SNP [dm3] X_3928270_SNP [dm6]	A	T	2.873e^-4	0.882	INTRON CG42541
2R	11021497	2R_11021497_SNP [dm3] 2R_15133992_SNP [dm6]	T	A	2.874e^-4	0.882	INTRON chn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	26656707	3R_26656707_DEL [dm3] 3R_30830985_DEL [dm6]	TTTTATTTT	T	2.878e^-4	0.882	INTRON CG15544
3L	8544975	3L_8544975_SNP [dm3] 3L_8551875_SNP [dm6]	T	C	2.899e^-4	0.884	INTRON rhea
3R	22171654	3R_22171654_SNP [dm3] 3R_26345932_SNP [dm6]	G	A	2.907e^-4	0.884	UPSTREAM CG6036 INTRON CG33970	TF binding site mE1_TFBS_inv
3R	17778951	3R_17778951_SNP [dm3] 3R_21953229_SNP [dm6]	A	T	2.909e^-4	0.884	INTRON Eip93F
3R	6664480	3R_6664480_SNP [dm3] 3R_10838758_SNP [dm6]	A	G	2.923e^-4	0.884	INTRON Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4730354	2R_4730354_SNP [dm3] 2R_8842849_SNP [dm6]	C	T	2.925e^-4	0.884	INTRON sns	TF binding site mE1_TFBS_chinmo
2L	17883966	2L_17883966_DEL [dm3] 2L_17883966_DEL [dm6]	TATTTGT	T	2.928e^-4	0.884	INTERGENIC
2L	14301068	2L_14301068_SNP [dm3] 2L_14301068_SNP [dm6]	T	G	2.936e^-4	0.884	START_GAINED wb UTR_5_PRIME wb INTRON wb	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	25327129	3R_25327129_SNP [dm3] 3R_29501407_SNP [dm6]	C	G	2.939e^-4	0.884	SYNONYMOUS_CODING Trc8	TF binding site mE1_TFBS_chinmo
3L	9601298	3L_9601298_SNP [dm3] 3L_9608198_SNP [dm6]	C	T	2.948e^-4	0.884	SYNONYMOUS_CODING CG3280
2R	7359278	2R_7359278_INS [dm3] 2R_11471773_INS [dm6]	T	TGATTAGGCTGCCCAT...	2.956e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	3447566	X_3447566_SNP [dm3] X_3553533_SNP [dm6]	A	C	2.968e^-4	0.884	INTRON CG32791	TF binding site BDTNP1_TFBS_twi
X	12207484	X_12207484_SNP [dm3] X_12313451_SNP [dm6]	G	T	2.973e^-4	0.884	INTRON Ten-a
2R	7812165	2R_7812165_SNP [dm3] 2R_11924660_SNP [dm6]	C	T	2.981e^-4	0.884	INTERGENIC
X	8270175	X_8270175_SNP [dm3] X_8376142_SNP [dm6]	C	G	2.982e^-4	0.884	INTERGENIC
3L	10907106	3L_10907106_SNP [dm3] 3L_10914006_SNP [dm6]	T	C	2.984e^-4	0.884	INTERGENIC
2L	19557170	2L_19557170_SNP [dm3] 2L_19557170_SNP [dm6]	C	T	2.989e^-4	0.884	UPSTREAM Tep5 DOWNSTREAM Tep4 INTERGENIC
2L	2332995	2L_2332995_SNP [dm3] 2L_2332995_SNP [dm6]	T	G	2.990e^-4	0.884	INTRON CG9967 & 1 other
3R	1798690	3R_1798690_SNP [dm3] 3R_5972968_SNP [dm6]	A	G	2.997e^-4	0.884	INTRON Obp83a
2R	15035159	2R_15035159_SNP [dm3] 2R_19147654_SNP [dm6]	C	T	3.000e^-4	0.884	INTRON ena	TF binding site mE1_TFBS_HSA
3L	17615087	3L_17615087_SNP [dm3] 3L_17621987_SNP [dm6]	C	A	3.000e^-4	0.884	UTR_5_PRIME CG7510 UPSTREAM CG6259	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	14380904	3R_14380904_SNP [dm3] 3R_18555182_SNP [dm6]	A	G	3.006e^-4	0.884	INTERGENIC
3R	9661271	3R_9661271_SNP [dm3] 3R_13835549_SNP [dm6]	G	A	3.007e^-4	0.884	INTRON Nsf2
3R	9661326	3R_9661326_SNP [dm3] 3R_13835604_SNP [dm6]	C	A	3.007e^-4	0.884	INTRON Nsf2	TF binding site mE1_TFBS_cad
3R	22559795	3R_22559795_SNP [dm3] 3R_26734073_SNP [dm6]	T	G	3.009e^-4	0.884	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6306818	3R_6306818_DEL [dm3] 3R_10481096_DEL [dm6]	TGG	A	3.009e^-4	0.884	INTERGENIC
2L	11482841	2L_11482841_SNP [dm3] 2L_11482841_SNP [dm6]	G	T	3.020e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11482870	2L_11482870_SNP [dm3] 2L_11482870_SNP [dm6]	G	A	3.020e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11484367	2L_11484367_SNP [dm3] 2L_11484367_SNP [dm6]	A	T	3.020e^-4	0.884	UPSTREAM CG43355 & 1 other INTERGENIC
3R	23422107	3R_23422107_SNP [dm3] 3R_27596385_SNP [dm6]	A	G	3.025e^-4	0.884	UPSTREAM CG5639 INTERGENIC	TF binding site mE1_TFBS_inv
3R	17528869	3R_17528869_SNP [dm3] 3R_21703147_SNP [dm6]	G	T	3.026e^-4	0.884	INTRON CG31176
X	15046811	X_15046811_SNP [dm3] X_15152778_SNP [dm6]	T	C	3.043e^-4	0.887	INTRON CG9095
2L	17021966	2L_17021966_SNP [dm3] 2L_17021966_SNP [dm6]	T	G	3.046e^-4	0.887	INTERGENIC
X	7732098	X_7732098_SNP [dm3] X_7838065_SNP [dm6]	T	A	3.056e^-4	0.888	INTRON CG1402	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3R	26673061	3R_26673061_SNP [dm3] 3R_30847339_SNP [dm6]	T	G	3.063e^-4	0.888	INTERGENIC
3L	15791052	3L_15791052_SNP [dm3] 3L_15797952_SNP [dm6]	T	A	3.071e^-4	0.888	INTERGENIC
3L	8070952	3L_8070952_SNP [dm3] 3L_8077852_SNP [dm6]	G	A	3.073e^-4	0.888	INTRON Ect4
2L	14331971	2L_14331971_SNP [dm3] 2L_14331971_SNP [dm6]	C	T	3.078e^-4	0.888	INTRON ms_2_34Fe	TF binding site mE1_TFBS_cad
3L	3547726	3L_3547726_SNP [dm3] 3L_3547726_SNP [dm6]	T	C	3.080e^-4	0.888	INTRON Eip63E
3R	15137983	3R_15137983_SNP [dm3] 3R_19312261_SNP [dm6]	G	A	3.088e^-4	0.888	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8563192	2R_8563192_SNP [dm3] 2R_12675687_SNP [dm6]	A	G	3.099e^-4	0.888	UPSTREAM CG42708 INTRON CG42708	TF binding site mE1_TFBS_inv
2L	7564651	2L_7564651_SNP [dm3] 2L_7564651_SNP [dm6]	C	T	3.105e^-4	0.888	INTRON RapGAP1
3R	17195019	3R_17195019_SNP [dm3] 3R_21369297_SNP [dm6]	T	C	3.108e^-4	0.888	UTR_5_PRIME pre-mod_mdg4_-U UTR_3_PRIME pre-mod_mdg4_-X & 1 other DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
3R	19490625	3R_19490625_SNP [dm3] 3R_23664903_SNP [dm6]	C	T	3.109e^-4	0.888	INTRON CG31145
3R	25434068	3R_25434068_SNP [dm3] 3R_29608346_SNP [dm6]	C	T	3.111e^-4	0.888	UPSTREAM Diedel2 INTRON alph
3L	5428004	3L_5428004_SNP [dm3] 3L_5434904_SNP [dm6]	C	G	3.113e^-4	0.888	INTRON CG34391
X	21867866	X_21867866_SNP [dm3] X_22466030_SNP [dm6]	T	C	3.122e^-4	0.889	UPSTREAM CG14619 INTRON CG14619
3R	16491053	3R_16491053_SNP [dm3] 3R_20665331_SNP [dm6]	C	A	3.133e^-4	0.891	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26177822	3R_26177822_SNP [dm3] 3R_30352100_SNP [dm6]	A	G	3.147e^-4	0.894	INTRON hdc
2R	7359192	2R_7359192_SNP [dm3] 2R_11471687_SNP [dm6]	T	C	3.158e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16489783	3R_16489783_SNP [dm3] 3R_20664061_SNP [dm6]	T	C	3.166e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3R	23128573	3R_23128573_SNP [dm3] 3R_27302851_SNP [dm6]	C	A	3.166e^-4	0.894	SYNONYMOUS_CODING CG3339
3R	5194883	3R_5194883_SNP [dm3] 3R_9369161_SNP [dm6]	T	C	3.167e^-4	0.894	SYNONYMOUS_CODING FER
3L	10283138	3L_10283138_SNP [dm3] 3L_10290038_SNP [dm6]	T	A	3.173e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15387655	2R_15387655_SNP [dm3] 2R_19500150_SNP [dm6]	G	A	3.179e^-4	0.895	SYNONYMOUS_CODING CG15120 DOWNSTREAM CG16926
3R	17918356	3R_17918356_SNP [dm3] 3R_22092634_SNP [dm6]	C	T	3.192e^-4	0.897	INTRON CG5778
2R	4243034	2R_4243034_SNP [dm3] 2R_8355529_SNP [dm6]	T	G	3.212e^-4	0.901	INTRON pdm3
3L	6455466	3L_6455466_SNP [dm3] 3L_6462366_SNP [dm6]	A	G	3.223e^-4	0.902	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	3822312	X_3822312_SNP [dm3] X_3928279_SNP [dm6]	T	G	3.228e^-4	0.902	INTRON CG42541
3R	26160887	3R_26160887_SNP [dm3] 3R_30335165_SNP [dm6]	C	A	3.228e^-4	0.902	INTRON hdc
X	9633399	X_9633399_SNP [dm3] X_9739366_SNP [dm6]	C	T	3.238e^-4	0.902	INTRON Sp1
2L	3441500	2L_3441500_SNP [dm3] 2L_3441500_SNP [dm6]	C	T	3.238e^-4	0.902	INTERGENIC
3L	6455472	3L_6455472_SNP [dm3] 3L_6462372_SNP [dm6]	C	T	3.242e^-4	0.902	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	10904177	3L_10904177_SNP [dm3] 3L_10911077_SNP [dm6]	C	G	3.252e^-4	0.903	INTERGENIC
3R	19017320	3R_19017320_SNP [dm3] 3R_23191598_SNP [dm6]	T	C	3.275e^-4	0.906	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	17142304	3R_17142304_SNP [dm3] 3R_21316582_SNP [dm6]	A	T	3.279e^-4	0.906	UPSTREAM mir-4951 EXON Hsromega
3R	18297998	3R_18297998_SNP [dm3] 3R_22472276_SNP [dm6]	T	C	3.282e^-4	0.906	SYNONYMOUS_CODING Nrx-1	TF binding site mE1_TFBS_chinmo
3L	18317363	3L_18317363_DEL [dm3] 3L_18324263_DEL [dm6]	TTATTTCCTTTGAC...	G	3.283e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	10750176	3L_10750176_SNP [dm3] 3L_10757076_SNP [dm6]	T	C	3.292e^-4	0.906	INTERGENIC
2L	3891396	2L_3891396_SNP [dm3] 2L_3891396_SNP [dm6]	C	T	3.297e^-4	0.906	INTRON capu
3R	21412947	3R_21412947_SNP [dm3] 3R_25587225_SNP [dm6]	A	G	3.304e^-4	0.906	INTRON msi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	4247418	2R_4247418_SNP [dm3] 2R_8359913_SNP [dm6]	A	G	3.306e^-4	0.906	NON_SYNONYMOUS_CODING spaw UTR_3_PRIME hubl DOWNSTREAM CG11635 INTRON pdm3	TF binding site mE1_TFBS_HSA
3R	14165316	3R_14165316_SNP [dm3] 3R_18339594_SNP [dm6]	C	A	3.308e^-4	0.906	INTRON CG15803
2L	7546200	2L_7546200_INS [dm3] 2L_7546200_INS [dm6]	A	AA	3.320e^-4	0.907	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1
3R	18815340	3R_18815340_SNP [dm3] 3R_22989618_SNP [dm6]	C	G	3.325e^-4	0.907	SYNONYMOUS_CODING Or94b INTRON Nha2	TF binding site mE1_TFBS_cad
3R	24341429	3R_24341429_SNP [dm3] 3R_28515707_SNP [dm6]	A	G	3.338e^-4	0.907	INTRON Dhc98D
3R	15087779	3R_15087779_SNP [dm3] 3R_19262057_SNP [dm6]	G	C	3.339e^-4	0.907	INTERGENIC
3R	11026701	3R_11026701_SNP [dm3] 3R_15200979_SNP [dm6]	C	T	3.339e^-4	0.907	SYNONYMOUS_CODING CG42542 INTRON CG42542
3R	9587897	3R_9587897_SNP [dm3] 3R_13762175_SNP [dm6]	G	A	3.343e^-4	0.907	UTR_3_PRIME CG34383 DOWNSTREAM CG34383 INTRON CG34383
3R	9587898	3R_9587898_SNP [dm3] 3R_13762176_SNP [dm6]	A	G	3.343e^-4	0.907	UTR_3_PRIME CG34383 DOWNSTREAM CG34383 INTRON CG34383
X	8233148	X_8233148_SNP [dm3] X_8339115_SNP [dm6]	C	T	3.351e^-4	0.907	INTRON nAChRalpha3
3R	9666776	3R_9666776_SNP [dm3] 3R_13841054_SNP [dm6]	G	A	3.352e^-4	0.907	INTERGENIC
2L	4587099	2L_4587099_SNP [dm3] 2L_4587099_SNP [dm6]	G	A	3.360e^-4	0.907	INTRON dp
X	9129853	X_9129853_SNP [dm3] X_9235820_SNP [dm6]	A	C	3.372e^-4	0.909	SYNONYMOUS_CODING Ir8a DOWNSTREAM mir-4916 & 1 other
2R	12170265	2R_12170265_SNP [dm3] 2R_16282760_SNP [dm6]	T	C	3.389e^-4	0.909	SYNONYMOUS_CODING CG7755 UPSTREAM CG9068	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15534941	3L_15534941_SNP [dm3] 3L_15541841_SNP [dm6]	A	T	3.390e^-4	0.909	INTRON CrebA
3R	25242436	3R_25242436_SNP [dm3] 3R_29416714_SNP [dm6]	A	G	3.403e^-4	0.909	INTRON Ptp99A
X	12997490	X_12997490_SNP [dm3] X_13103457_SNP [dm6]	T	C	3.408e^-4	0.909	INTRON CG43313
X	19770383	X_19770383_SNP [dm3] X_19876350_SNP [dm6]	T	A	3.409e^-4	0.909	INTRON Hers	TF binding site mE1_TFBS_HSA
3L	5025514	3L_5025514_SNP [dm3] 3L_5025514_SNP [dm6]	C	G	3.409e^-4	0.909	INTRON Con
3R	26430964	3R_26430964_SNP [dm3] 3R_30605242_SNP [dm6]	A	C	3.422e^-4	0.909	NON_SYNONYMOUS_CODING PH4alphaNE3 UPSTREAM CG31016
3R	12558056	3R_12558056_SNP [dm3] 3R_16732334_SNP [dm6]	T	C	3.425e^-4	0.909	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	4916804	2L_4916804_SNP [dm3] 2L_4916804_SNP [dm6]	A	C	3.426e^-4	0.909	INTRON hoe1
2R	6916870	2R_6916870_SNP [dm3] 2R_11029365_SNP [dm6]	C	T	3.428e^-4	0.909	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9673845	3R_9673845_SNP [dm3] 3R_13848123_SNP [dm6]	G	C	3.432e^-4	0.909	INTERGENIC	TF binding site mE1_TFBS_cad
3R	10985809	3R_10985809_SNP [dm3] 3R_15160087_SNP [dm6]	G	T	3.439e^-4	0.909	INTRON Gyc88E
X	9101066	X_9101066_SNP [dm3] X_9207033_SNP [dm6]	A	G	3.440e^-4	0.909	SYNONYMOUS_CODING CG12119
2L	3608576	2L_3608576_SNP [dm3] 2L_3608576_SNP [dm6]	C	A	3.442e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15787592	3L_15787592_SNP [dm3] 3L_15794492_SNP [dm6]	T	A	3.448e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	15787605	3L_15787605_SNP [dm3] 3L_15794505_SNP [dm6]	T	A	3.448e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	3608711	2L_3608711_SNP [dm3] 2L_3608711_SNP [dm6]	G	C	3.459e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8566496	2R_8566496_SNP [dm3] 2R_12678991_SNP [dm6]	C	T	3.470e^-4	0.911	DOWNSTREAM CG8771 INTRON CG42708
2L	1390805	2L_1390805_SNP [dm3] 2L_1390805_SNP [dm6]	G	A	3.471e^-4	0.911	INTRON lea
2L	8128082	2L_8128082_DEL [dm3] 2L_8128082_DEL [dm6]	TAGAATACCAAGGCAAGATT...	A	3.477e^-4	0.911	INTRON CG8668	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	13935195	2L_13935195_SNP [dm3] 2L_13935195_SNP [dm6]	A	C	3.489e^-4	0.913	UPSTREAM CG16885 INTRON Ance-3
2L	10588166	2L_10588166_SNP [dm3] 2L_10588166_SNP [dm6]	C	T	3.497e^-4	0.913	INTRON Trim9
2L	3781364	2L_3781364_INS [dm3] 2L_3781364_INS [dm6]	T	TT	3.498e^-4	0.913	INTRON bowl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8509453	3L_8509453_SNP [dm3] 3L_8516353_SNP [dm6]	G	C	3.507e^-4	0.914	SYNONYMOUS_CODING CG6765	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18700085	2R_18700085_SNP [dm3] 2R_22812580_SNP [dm6]	A	G	3.532e^-4	0.917	INTRON stl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8480461	2R_8480461_SNP [dm3] 2R_12592956_SNP [dm6]	C	T	3.537e^-4	0.917	UPSTREAM Amph & 1 other DOWNSTREAM CR45279 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3911663	2L_3911663_SNP [dm3] 2L_3911663_SNP [dm6]	A	T	3.543e^-4	0.917	DOWNSTREAM CG31773 INTRON fred
2L	3911669	2L_3911669_SNP [dm3] 2L_3911669_SNP [dm6]	A	G	3.543e^-4	0.917	DOWNSTREAM CG31773 INTRON fred
3R	15332376	3R_15332376_SNP [dm3] 3R_19506654_SNP [dm6]	A	C	3.553e^-4	0.917	SYNONYMOUS_CODING Dys
2R	14089807	2R_14089807_SNP [dm3] 2R_18202302_SNP [dm6]	G	T	3.558e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	22252075	X_22252075_SNP [dm3] X_22850239_SNP [dm6]	A	G	3.575e^-4	0.917	INTRON fog & 1 other
2R	18609243	2R_18609243_SNP [dm3] 2R_22721738_SNP [dm6]	C	T	3.575e^-4	0.917	NON_SYNONYMOUS_CODING jbug DOWNSTREAM jbug	TF binding site mE1_TFBS_cad
2R	14970752	2R_14970752_SNP [dm3] 2R_19083247_SNP [dm6]	C	T	3.577e^-4	0.917	INTRON 5-HT1A
3R	26433243	3R_26433243_SNP [dm3] 3R_30607521_SNP [dm6]	T	C	3.586e^-4	0.917	SYNONYMOUS_CODING CG31016
2L	10045161	2L_10045161_SNP [dm3] 2L_10045161_SNP [dm6]	T	C	3.587e^-4	0.917	INTERGENIC
2L	17021969	2L_17021969_SNP [dm3] 2L_17021969_SNP [dm6]	G	T	3.594e^-4	0.917	INTERGENIC
X	16320246	X_16320246_SNP [dm3] X_16426213_SNP [dm6]	T	A	3.599e^-4	0.917	INTRON hang	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	15514881	2R_15514881_SNP [dm3] 2R_19627376_SNP [dm6]	G	C	3.600e^-4	0.917	INTRON sm
2R	15514900	2R_15514900_SNP [dm3] 2R_19627395_SNP [dm6]	C	T	3.600e^-4	0.917	INTRON sm
X	4394364	X_4394364_SNP [dm3] X_4500331_SNP [dm6]	C	T	3.606e^-4	0.917	INTRON CR32773
3R	18463207	3R_18463207_SNP [dm3] 3R_22637485_SNP [dm6]	A	T	3.615e^-4	0.917	SYNONYMOUS_CODING loco	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8451464	2L_8451464_SNP [dm3] 2L_8451464_SNP [dm6]	C	A	3.616e^-4	0.917	UTR_5_PRIME fu12 UPSTREAM fu12 INTRON fu12
3R	23512349	3R_23512349_SNP [dm3] 3R_27686627_SNP [dm6]	A	T	3.617e^-4	0.917	INTRON CG12880 & 1 other	TF binding site mE1_TFBS_cad
3R	4618040	3R_4618040_SNP [dm3] 3R_8792318_SNP [dm6]	C	T	3.621e^-4	0.917	INTRON Pif1A & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	939594	X_939594_SNP [dm3] X_1045561_SNP [dm6]	C	G	3.632e^-4	0.917	SYNONYMOUS_CODING su_w[a]_ UTR_3_PRIME su_w[a]_ UPSTREAM CG42259	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22372920	3R_22372920_SNP [dm3] 3R_26547198_SNP [dm6]	A	T	3.635e^-4	0.917	INTRON scrib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22663320	3R_22663320_SNP [dm3] 3R_26837598_SNP [dm6]	T	C	3.636e^-4	0.917	INTRON Tl
2L	1603656	2L_1603656_SNP [dm3] 2L_1603656_SNP [dm6]	T	C	3.639e^-4	0.917	INTRON CG31935 & 1 other
2L	4719120	2L_4719120_SNP [dm3] 2L_4719120_SNP [dm6]	G	A	3.650e^-4	0.918	INTRON CG34351
2L	4719138	2L_4719138_SNP [dm3] 2L_4719138_SNP [dm6]	A	G	3.650e^-4	0.918	INTRON CG34351
X	7732089	X_7732089_SNP [dm3] X_7838056_SNP [dm6]	G	C	3.656e^-4	0.918	INTRON CG1402	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2R	2853608	2R_2853608_SNP [dm3] 2R_6966103_SNP [dm6]	G	A	3.663e^-4	0.918	INTRON mim & 1 other
3R	16491242	3R_16491242_DEL [dm3] 3R_20665520_DEL [dm6]	GCGCCCCAGTTG...	G	3.671e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9385594	3R_9385594_SNP [dm3] 3R_13559872_SNP [dm6]	A	T	3.672e^-4	0.918	INTERGENIC
X	6535181	X_6535181_SNP [dm3] X_6641148_SNP [dm6]	A	T	3.696e^-4	0.923	INTRON pigs
3R	14306459	3R_14306459_SNP [dm3] 3R_18480737_SNP [dm6]	T	C	3.701e^-4	0.923	UPSTREAM fru INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	1821372	2L_1821372_SNP [dm3] 2L_1821372_SNP [dm6]	G	A	3.720e^-4	0.924	SYNONYMOUS_CODING CG31933
3R	26675970	3R_26675970_SNP [dm3] 3R_30850248_SNP [dm6]	C	T	3.729e^-4	0.924	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	1115596	3L_1115596_DEL [dm3] 3L_1115596_DEL [dm6]	AA	A	3.737e^-4	0.924	INTERGENIC
X	7962264	X_7962264_SNP [dm3] X_8068231_SNP [dm6]	G	A	3.738e^-4	0.924	SYNONYMOUS_CODING mys	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8287687	2L_8287687_DEL [dm3] 2L_8287687_DEL [dm6]	AAA	A	3.738e^-4	0.924	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	24201283	3L_24201283_INS [dm3] 3L_24208183_INS [dm6]	T	TT	3.743e^-4	0.924	INTRON Snap25
2R	12916846	2R_12916846_SNP [dm3] 2R_17029341_SNP [dm6]	A	G	3.744e^-4	0.924	INTRON RhoGEF2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	17941474	3L_17941474_SNP [dm3] 3L_17948374_SNP [dm6]	T	C	3.748e^-4	0.924	UPSTREAM CR45393 INTERGENIC
2R	2831458	2R_2831458_SNP [dm3] 2R_6943953_SNP [dm6]	T	A	3.753e^-4	0.924	NON_SYNONYMOUS_CODING CheB42b DOWNSTREAM CheB42c INTRON mim
2R	9502798	2R_9502798_SNP [dm3] 2R_13615293_SNP [dm6]	T	C	3.754e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21147501	3R_21147501_SNP [dm3] 3R_25321779_SNP [dm6]	A	G	3.784e^-4	0.926	SYNONYMOUS_CODING CG10562	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3658031	2L_3658031_SNP [dm3] 2L_3658031_SNP [dm6]	C	T	3.790e^-4	0.926	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5343614	3L_5343614_INS [dm3] 3L_5350514_INS [dm6]	G	GG	3.796e^-4	0.926	INTRON lama
2R	17365215	2R_17365215_SNP [dm3] 2R_21477710_SNP [dm6]	T	A	3.796e^-4	0.926	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10962671	2L_10962671_SNP [dm3] 2L_10962671_SNP [dm6]	G	T	3.804e^-4	0.926	INTRON dpr2
3L	5906187	3L_5906187_INS [dm3] 3L_5913087_INS [dm6]	A	AA	3.806e^-4	0.926	INTRON CG13288
2L	8245507	2L_8245507_SNP [dm3] 2L_8245507_SNP [dm6]	T	A	3.808e^-4	0.926	INTRON CG8086
2R	17264926	2R_17264926_SNP [dm3] 2R_21377421_SNP [dm6]	G	A	3.810e^-4	0.926	INTRON cv-2
2L	4902776	2L_4902776_SNP [dm3] 2L_4902776_SNP [dm6]	T	C	3.812e^-4	0.926	SYNONYMOUS_CODING CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	503231	3L_503231_SNP [dm3] 3L_503231_SNP [dm6]	G	A	3.823e^-4	0.926	INTRON klar
3R	20386246	3R_20386246_SNP [dm3] 3R_24560524_SNP [dm6]	G	T	3.830e^-4	0.926	STOP_GAINED CG13624 INTRON CG13624	TF binding site mE1_TFBS_cad
2R	12354245	2R_12354245_SNP [dm3] 2R_16466740_SNP [dm6]	T	C	3.838e^-4	0.926	NON_SYNONYMOUS_CODING CheB53a
2L	10219574	2L_10219574_SNP [dm3] 2L_10219574_SNP [dm6]	A	G	3.843e^-4	0.926	INTRON Npc1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
2L	3893816	2L_3893816_SNP [dm3] 2L_3893816_SNP [dm6]	A	G	3.847e^-4	0.926	INTRON capu
2L	1575742	2L_1575742_SNP [dm3] 2L_1575742_SNP [dm6]	T	C	3.848e^-4	0.926	INTRON haf
2R	8563191	2R_8563191_SNP [dm3] 2R_12675686_SNP [dm6]	A	G	3.850e^-4	0.926	UPSTREAM CG42708 INTRON CG42708	TF binding site mE1_TFBS_inv
3L	16038153	3L_16038153_SNP [dm3] 3L_16045053_SNP [dm6]	T	A	3.855e^-4	0.926	INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	7734234	X_7734234_SNP [dm3] X_7840201_SNP [dm6]	C	T	3.856e^-4	0.926	INTRON CG1402
3R	22374931	3R_22374931_SNP [dm3] 3R_26549209_SNP [dm6]	C	T	3.859e^-4	0.926	INTRON scrib
2L	1676263	2L_1676263_SNP [dm3] 2L_1676263_SNP [dm6]	G	A	3.876e^-4	0.928	INTRON chinmo
3R	9676353	3R_9676353_SNP [dm3] 3R_13850631_SNP [dm6]	G	C	3.891e^-4	0.928	INTERGENIC
3R	18815904	3R_18815904_SNP [dm3] 3R_22990182_SNP [dm6]	C	T	3.892e^-4	0.928	SYNONYMOUS_CODING Or94b INTRON Nha2	TF binding site mE1_TFBS_cad
3R	19490420	3R_19490420_SNP [dm3] 3R_23664698_SNP [dm6]	G	C	3.901e^-4	0.928	INTRON CG31145
3L	7229159	3L_7229159_SNP [dm3] 3L_7236059_SNP [dm6]	G	A	3.905e^-4	0.928	DOWNSTREAM CG14826 & 1 other INTERGENIC
3L	7069379	3L_7069379_SNP [dm3] 3L_7076279_SNP [dm6]	A	T	3.907e^-4	0.928	INTRON CG8641
3R	16508943	3R_16508943_SNP [dm3] 3R_20683221_SNP [dm6]	A	G	3.911e^-4	0.928	INTERGENIC
2L	15221667	2L_15221667_SNP [dm3] 2L_15221667_SNP [dm6]	T	C	3.916e^-4	0.928	INTERGENIC
2R	8848281	2R_8848281_SNP [dm3] 2R_12960776_SNP [dm6]	A	T	3.922e^-4	0.928	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19344643	3R_19344643_SNP [dm3] 3R_23518921_SNP [dm6]	C	T	3.924e^-4	0.928	UPSTREAM Irk2 INTRON Irk2
2L	1576572	2L_1576572_SNP [dm3] 2L_1576572_SNP [dm6]	T	C	3.925e^-4	0.928	INTRON haf
2R	19673335	2R_19673335_SNP [dm3] 2R_23785812_SNP [dm6]	G	A	3.934e^-4	0.928	INTRON CG9850
2L	15195139	2L_15195139_SNP [dm3] 2L_15195139_SNP [dm6]	T	C	3.939e^-4	0.928	INTRON CG4168
3R	24339497	3R_24339497_INS [dm3] 3R_28513775_INS [dm6]	G	GAAGGG	3.947e^-4	0.928	INTRON Dhc98D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1576666	2L_1576666_SNP [dm3] 2L_1576666_SNP [dm6]	G	T	3.950e^-4	0.928	INTRON haf
X	3809880	X_3809880_SNP [dm3] X_3915847_SNP [dm6]	A	T	3.955e^-4	0.928	INTRON CG42541
2L	6238746	2L_6238746_SNP [dm3] 2L_6238746_SNP [dm6]	C	A	3.968e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	17321522	X_17321522_SNP [dm3] X_17427489_SNP [dm6]	C	T	3.976e^-4	0.928	SYNONYMOUS_CODING CG5613 INTRON CG12994	TF binding site mE1_TFBS_chinmo
3R	19364904	3R_19364904_SNP [dm3] 3R_23539182_SNP [dm6]	A	G	3.976e^-4	0.928	UPSTREAM CG10168 INTERGENIC
3R	19364908	3R_19364908_SNP [dm3] 3R_23539186_SNP [dm6]	A	G	3.976e^-4	0.928	UPSTREAM CG10168 INTERGENIC
2R	4200152	2R_4200152_SNP [dm3] 2R_8312647_SNP [dm6]	A	T	3.986e^-4	0.928	DOWNSTREAM CR44450 INTERGENIC
X	12453157	X_12453157_MNP [dm3] X_12559124_MNP [dm6]	TGC	ATT	3.987e^-4	0.928	INTRON CG43921
X	12453162	X_12453162_SNP [dm3] X_12559129_SNP [dm6]	A	T	3.987e^-4	0.928	INTRON CG43921
2L	4028901	2L_4028901_SNP [dm3] 2L_4028901_SNP [dm6]	A	C	3.996e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	21183857	3R_21183857_SNP [dm3] 3R_25358135_SNP [dm6]	C	A	3.998e^-4	0.928	UPSTREAM CG11913 INTRON Fur1
3R	4014047	3R_4014047_DEL [dm3] 3R_8188325_DEL [dm6]	TT	T	3.998e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17759073	2R_17759073_SNP [dm3] 2R_21871568_SNP [dm6]	T	A	4.003e^-4	0.928	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	12453155	X_12453155_SNP [dm3] X_12559122_SNP [dm6]	C	T	4.004e^-4	0.928	INTRON CG43921
2L	7136861	2L_7136861_SNP [dm3] 2L_7136861_SNP [dm6]	T	A	4.012e^-4	0.928	INTRON Pvf3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14305949	3R_14305949_INS [dm3] 3R_18480227_INS [dm6]	C	CTATACC	4.016e^-4	0.928	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	6662091	3R_6662091_SNP [dm3] 3R_10836369_SNP [dm6]	G	A	4.033e^-4	0.931	INTRON Cad86C
2L	19286203	2L_19286203_SNP [dm3] 2L_19286203_SNP [dm6]	T	A	4.059e^-4	0.936	INTERGENIC
X	7732211	X_7732211_SNP [dm3] X_7838178_SNP [dm6]	T	A	4.066e^-4	0.936	INTRON CG1402	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
X	4144319	X_4144319_SNP [dm3] X_4250286_SNP [dm6]	T	A	4.069e^-4	0.936	INTERGENIC
2R	4523389	2R_4523389_INS [dm3] 2R_8635884_INS [dm6]	C	CTATTTGGTGGTGCATTAT...	4.092e^-4	0.937	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	4523409	2R_4523409_SNP [dm3] 2R_8635904_SNP [dm6]	A	T	4.092e^-4	0.937	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	4523460	2R_4523460_MNP [dm3] 2R_8635955_MNP [dm6]	ACTT	TACA	4.092e^-4	0.937	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16202128	2R_16202128_SNP [dm3] 2R_20314623_SNP [dm6]	A	C	4.101e^-4	0.937	UPSTREAM CG13868 & 1 other INTRON CG13868
X	12206924	X_12206924_SNP [dm3] X_12312891_SNP [dm6]	A	C	4.109e^-4	0.937	SYNONYMOUS_CODING Ten-a
X	16445453	X_16445453_DEL [dm3] X_16551420_DEL [dm6]	TGG	T	4.115e^-4	0.937	INTRON Arp2
2L	10023938	2L_10023938_SNP [dm3] 2L_10023938_SNP [dm6]	A	G	4.123e^-4	0.937	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25069064	3R_25069064_SNP [dm3] 3R_29243342_SNP [dm6]	A	G	4.124e^-4	0.937	INTRON CG31445
3L	15534935	3L_15534935_SNP [dm3] 3L_15541835_SNP [dm6]	A	C	4.129e^-4	0.937	INTRON CrebA
3L	2126470	3L_2126470_SNP [dm3] 3L_2126470_SNP [dm6]	T	G	4.132e^-4	0.937	SYNONYMOUS_CODING zormin UTR_3_PRIME zormin	TF binding site mE1_TFBS_cad
X	4466040	X_4466040_SNP [dm3] X_4572007_SNP [dm6]	G	A	4.132e^-4	0.937	UPSTREAM CG12684 INTRON CR32773
3R	19483365	3R_19483365_SNP [dm3] 3R_23657643_SNP [dm6]	T	A	4.135e^-4	0.937	INTRON CG31145
2L	9459218	2L_9459218_SNP [dm3] 2L_9459218_SNP [dm6]	G	A	4.169e^-4	0.944	INTRON numb	TF binding site BDTNP1_TFBS_dl
3L	14628116	3L_14628116_SNP [dm3] 3L_14635016_SNP [dm6]	C	T	4.180e^-4	0.945	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	6140064	2R_6140064_SNP [dm3] 2R_10252559_SNP [dm6]	A	T	4.201e^-4	0.947	UPSTREAM Syb INTRON CG12913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3L	9116522	3L_9116522_SNP [dm3] 3L_9123422_SNP [dm6]	A	T	4.204e^-4	0.947	INTRON bol	TF binding site mE1_TFBS_Ubx
2L	1578696	2L_1578696_SNP [dm3] 2L_1578696_SNP [dm6]	A	T	4.207e^-4	0.947	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	2813877	2R_2813877_SNP [dm3] 2R_6926372_SNP [dm6]	G	A	4.215e^-4	0.947	INTRON mim	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	14732418	X_14732418_SNP [dm3] X_14838385_SNP [dm6]	A	T	4.222e^-4	0.947	UTR_3_PRIME CG32590 UPSTREAM CG14407 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7152961	3R_7152961_SNP [dm3] 3R_11327239_SNP [dm6]	G	C	4.233e^-4	0.947	INTERGENIC
2L	10188191	2L_10188191_SNP [dm3] 2L_10188191_SNP [dm6]	T	C	4.238e^-4	0.947	SYNONYMOUS_CODING Sur
2R	7804430	2R_7804430_SNP [dm3] 2R_11916925_SNP [dm6]	G	A	4.238e^-4	0.947	UPSTREAM CR44305 INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	4205960	2R_4205960_SNP [dm3] 2R_8318455_SNP [dm6]	A	G	4.239e^-4	0.947	INTERGENIC
3R	24740544	3R_24740544_SNP [dm3] 3R_28914822_SNP [dm6]	C	T	4.241e^-4	0.947	INTRON Doa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8282212	2L_8282212_INS [dm3] 2L_8282212_INS [dm6]	C	CT	4.256e^-4	0.948	INTRON Btk29A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1391647	2L_1391647_SNP [dm3] 2L_1391647_SNP [dm6]	G	A	4.278e^-4	0.948	SYNONYMOUS_CODING lea	TF binding site mE1_TFBS_sens
3R	25119158	3R_25119158_SNP [dm3] 3R_29293436_SNP [dm6]	G	A	4.285e^-4	0.948	DOWNSTREAM CG14506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	13820328	X_13820328_SNP [dm3] X_13926295_SNP [dm6]	G	C	4.288e^-4	0.948	INTRON mamo	TF binding site mE1_TFBS_kn
3L	6042858	3L_6042858_SNP [dm3] 3L_6049758_SNP [dm6]	A	G	4.291e^-4	0.948	UPSTREAM Jon65Aiii INTERGENIC
3R	19612731	3R_19612731_SNP [dm3] 3R_23787009_SNP [dm6]	G	A	4.300e^-4	0.948	INTRON mbc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	13919716	2R_13919716_SNP [dm3] 2R_18032211_SNP [dm6]	C	T	4.306e^-4	0.948	INTERGENIC
X	3186095	X_3186095_SNP [dm3] X_3292062_SNP [dm6]	A	G	4.312e^-4	0.948	INTRON dnc	TF binding site BDTNP1_TFBS_dl
2R	8590398	2R_8590398_SNP [dm3] 2R_12702893_SNP [dm6]	C	G	4.322e^-4	0.948	INTERGENIC
3L	12302659	3L_12302659_SNP [dm3] 3L_12309559_SNP [dm6]	G	T	4.325e^-4	0.948	INTERGENIC
3R	3616347	3R_3616347_SNP [dm3] 3R_7790625_SNP [dm6]	G	A	4.333e^-4	0.948	UPSTREAM CG10086 & 1 other INTERGENIC
3L	15534944	3L_15534944_SNP [dm3] 3L_15541844_SNP [dm6]	C	T	4.340e^-4	0.948	INTRON CrebA
3R	9706593	3R_9706593_SNP [dm3] 3R_13880871_SNP [dm6]	A	C	4.350e^-4	0.948	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	9706597	3R_9706597_SNP [dm3] 3R_13880875_SNP [dm6]	A	G	4.350e^-4	0.948	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	1603321	2L_1603321_SNP [dm3] 2L_1603321_SNP [dm6]	T	G	4.365e^-4	0.948	SYNONYMOUS_CODING haf INTRON CG31935	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12115595	2R_12115595_SNP [dm3] 2R_16228090_SNP [dm6]	G	T	4.365e^-4	0.948	SYNONYMOUS_CODING Tsf3 INTRON CG15706	TF binding site mE1_TFBS_chinmo
3R	14057558	3R_14057558_SNP [dm3] 3R_18231836_SNP [dm6]	G	A	4.368e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	7500744	X_7500744_SNP [dm3] X_7606711_SNP [dm6]	T	G	4.383e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	26689603	3R_26689603_SNP [dm3] 3R_30863881_SNP [dm6]	A	G	4.383e^-4	0.948	INTERGENIC
X	11252801	X_11252801_SNP [dm3] X_11358768_SNP [dm6]	C	T	4.398e^-4	0.948	UPSTREAM Pa1 DOWNSTREAM dsh INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2390421	3L_2390421_SNP [dm3] 3L_2390421_SNP [dm6]	G	T	4.398e^-4	0.948	SPLICE_SITE_REGION CG32298 & 1 other SYNONYMOUS_CODING CG32298 UTR_5_PRIME CG32299 UPSTREAM CG32299 DOWNSTREAM CG42787 INTRON CG45186
X	8557125	X_8557125_SNP [dm3] X_8663092_SNP [dm6]	C	G	4.401e^-4	0.948	INTERGENIC
2R	9268547	2R_9268547_SNP [dm3] 2R_13381042_SNP [dm6]	T	G	4.407e^-4	0.948	INTERGENIC
3R	21560804	3R_21560804_SNP [dm3] 3R_25735082_SNP [dm6]	T	A	4.407e^-4	0.948	INTRON LpR2
3R	17210043	3R_17210043_SNP [dm3] 3R_21384321_SNP [dm6]	T	C	4.410e^-4	0.948	INTERGENIC	regulatory region REDfly_CRMs
3R	26641267	3R_26641267_SNP [dm3] 3R_30815545_SNP [dm6]	A	G	4.412e^-4	0.948	INTRON cindr
3L	8674048	3L_8674048_DEL [dm3] 3L_8680948_DEL [dm6]	CAGTAATGAAA...	TTTT	4.415e^-4	0.948	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3709945	2L_3709945_SNP [dm3] 2L_3709945_SNP [dm6]	C	T	4.420e^-4	0.948	SYNONYMOUS_CODING cutlet	TF binding site mE1_TFBS_cad
2R	6784461	2R_6784461_SNP [dm3] 2R_10896956_SNP [dm6]	C	G	4.421e^-4	0.948	UTR_3_PRIME CG12942 DOWNSTREAM CG7712	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21586223	3R_21586223_SNP [dm3] 3R_25760501_SNP [dm6]	G	A	4.424e^-4	0.948	UTR_5_PRIME LpR1 UPSTREAM LpR1 INTRON LpR1
3L	18934788	3L_18934788_SNP [dm3] 3L_18941688_SNP [dm6]	A	T	4.432e^-4	0.948	INTRON CG32204
3L	10902642	3L_10902642_SNP [dm3] 3L_10909542_SNP [dm6]	G	T	4.440e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4719091	2L_4719091_SNP [dm3] 2L_4719091_SNP [dm6]	A	G	4.459e^-4	0.948	INTRON CG34351
3L	7496982	3L_7496982_SNP [dm3] 3L_7503882_SNP [dm6]	G	A	4.463e^-4	0.948	INTERGENIC
X	8342698	X_8342698_SNP [dm3] X_8448665_SNP [dm6]	G	T	4.466e^-4	0.948	NON_SYNONYMOUS_CODING org-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5135624	3L_5135624_SNP [dm3] 3L_5142524_SNP [dm6]	T	G	4.468e^-4	0.948	UPSTREAM CG10672 INTRON CG4623
2L	12666403	2L_12666403_SNP [dm3] 2L_12666403_SNP [dm6]	C	T	4.468e^-4	0.948	DOWNSTREAM CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26175301	3R_26175301_SNP [dm3] 3R_30349579_SNP [dm6]	A	G	4.469e^-4	0.948	INTRON hdc
3L	17454644	3L_17454644_SNP [dm3] 3L_17461544_SNP [dm6]	G	C	4.469e^-4	0.948	INTERGENIC
2L	3891526	2L_3891526_DEL [dm3] 2L_3891526_DEL [dm6]	TAAGTCTACT	T	4.470e^-4	0.948	INTRON capu
4	162053	4_162053_SNP [dm3] 4_141427_SNP [dm6]	A	C	4.471e^-4	0.948	SYNONYMOUS_CODING CG32000
2R	14373337	2R_14373337_SNP [dm3] 2R_18485832_SNP [dm6]	G	T	4.472e^-4	0.948	INTRON CG30116
3R	10172238	3R_10172238_DEL [dm3] 3R_14346516_DEL [dm6]	CTAATAACAGCC...	C	4.477e^-4	0.948	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	14901237	2R_14901237_SNP [dm3] 2R_19013732_SNP [dm6]	C	T	4.485e^-4	0.948	INTERGENIC
3L	4049224	3L_4049224_SNP [dm3] 3L_4049224_SNP [dm6]	T	A	4.493e^-4	0.948	INTRON CG1136
3R	18954982	3R_18954982_SNP [dm3] 3R_23129260_SNP [dm6]	C	A	4.496e^-4	0.948	SYNONYMOUS_CODING hh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15048931	2R_15048931_SNP [dm3] 2R_19161426_SNP [dm6]	C	A	4.500e^-4	0.948	INTRON ena
X	7747612	X_7747612_SNP [dm3] X_7853579_SNP [dm6]	G	A	4.501e^-4	0.948	SYNONYMOUS_CODING CG10920	TF binding site mE1_TFBS_chinmo
2R	8564302	2R_8564302_SNP [dm3] 2R_12676797_SNP [dm6]	T	C	4.504e^-4	0.948	UPSTREAM CG42708 INTRON CG42708	TF binding site mE1_TFBS_inv
2L	3608721	2L_3608721_SNP [dm3] 2L_3608721_SNP [dm6]	C	T	4.506e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1395462	2L_1395462_SNP [dm3] 2L_1395462_SNP [dm6]	C	A	4.507e^-4	0.948	INTRON lea
2R	14830618	2R_14830618_SNP [dm3] 2R_18943113_SNP [dm6]	A	G	4.516e^-4	0.949	INTRON sano
3L	5984312	3L_5984312_SNP [dm3] 3L_5991212_SNP [dm6]	G	A	4.519e^-4	0.949	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	11523549	2L_11523549_SNP [dm3] 2L_11523549_SNP [dm6]	G	A	4.538e^-4	0.952	UTR_3_PRIME CG31705 UPSTREAM CG43153	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4523429	2R_4523429_SNP [dm3] 2R_8635924_SNP [dm6]	A	T	4.549e^-4	0.953	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3608072	2L_3608072_SNP [dm3] 2L_3608072_SNP [dm6]	G	C	4.564e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8492828	2L_8492828_SNP [dm3] 2L_8492828_SNP [dm6]	G	T	4.567e^-4	0.954	INTRON Dh31
X	515152	X_515152_SNP [dm3] X_621119_SNP [dm6]	C	T	4.571e^-4	0.954	SYNONYMOUS_CODING CG13365 UPSTREAM CG13366 & 1 other DOWNSTREAM CR45474	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	18867224	2L_18867224_INS [dm3] 2L_18867224_INS [dm6]	A	AGTTA	4.572e^-4	0.954	UPSTREAM mir-4946 INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15106869	2R_15106869_SNP [dm3] 2R_19219364_SNP [dm6]	C	T	4.587e^-4	0.955	INTRON hppy
3R	16726548	3R_16726548_SNP [dm3] 3R_20900826_SNP [dm6]	A	T	4.588e^-4	0.955	INTERGENIC
3R	9316941	3R_9316941_SNP [dm3] 3R_13491219_SNP [dm6]	C	A	4.609e^-4	0.958	INTERGENIC
3R	26976342	3R_26976342_SNP [dm3] 3R_31150620_SNP [dm6]	C	T	4.615e^-4	0.958	SYNONYMOUS_CODING Gycbeta100B
2R	12533920	2R_12533920_SNP [dm3] 2R_16646415_SNP [dm6]	C	A	4.623e^-4	0.959	SYNONYMOUS_CODING gprs UTR_3_PRIME gprs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15945568	3R_15945568_SNP [dm3] 3R_20119846_SNP [dm6]	C	T	4.629e^-4	0.959	INTERGENIC
2L	11318856	2L_11318856_SNP [dm3] 2L_11318856_SNP [dm6]	T	C	4.649e^-4	0.961	UPSTREAM CR44583 INTERGENIC
3R	25601638	3R_25601638_SNP [dm3] 3R_29775916_SNP [dm6]	G	A	4.672e^-4	0.961	INTRON kay	TF binding site BDTNP1_TFBS_z
2L	1553672	2L_1553672_SNP [dm3] 2L_1553672_SNP [dm6]	A	G	4.683e^-4	0.961	INTERGENIC
3L	16776987	3L_16776987_SNP [dm3] 3L_16783887_SNP [dm6]	C	T	4.699e^-4	0.961	SYNONYMOUS_CODING CG9706	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	4200134	2R_4200134_SNP [dm3] 2R_8312629_SNP [dm6]	G	A	4.708e^-4	0.961	DOWNSTREAM CR44450 INTERGENIC
2R	4201296	2R_4201296_SNP [dm3] 2R_8313791_SNP [dm6]	T	A	4.708e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4214598	2R_4214598_SNP [dm3] 2R_8327093_SNP [dm6]	C	T	4.708e^-4	0.961	UPSTREAM pdm3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	4221196	2R_4221196_SNP [dm3] 2R_8333691_SNP [dm6]	T	C	4.708e^-4	0.961	INTRON pdm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12364673	3R_12364673_SNP [dm3] 3R_16538951_SNP [dm6]	C	G	4.708e^-4	0.961	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
X	7731672	X_7731672_SNP [dm3] X_7837639_SNP [dm6]	T	A	4.710e^-4	0.961	INTRON CG1402
X	7734244	X_7734244_INS [dm3] X_7840211_INS [dm6]	T	TGTAT	4.723e^-4	0.961	INTRON CG1402
X	8533768	X_8533768_DEL [dm3] X_8639735_DEL [dm6]	AA	A	4.727e^-4	0.961	INTRON oc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14855929	2R_14855929_SNP [dm3] 2R_18968424_SNP [dm6]	C	A	4.729e^-4	0.961	DOWNSTREAM prod INTERGENIC
X	3186072	X_3186072_SNP [dm3] X_3292039_SNP [dm6]	A	G	4.730e^-4	0.961	INTRON dnc
3R	26665946	3R_26665946_SNP [dm3] 3R_30840224_SNP [dm6]	G	C	4.738e^-4	0.961	INTRON CG15544	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11332340	3R_11332340_SNP [dm3] 3R_15506618_SNP [dm6]	C	T	4.751e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	24532063	3R_24532063_SNP [dm3] 3R_28706341_SNP [dm6]	C	T	4.754e^-4	0.961	SYNONYMOUS_CODING htt
2R	8559971	2R_8559971_SNP [dm3] 2R_12672466_SNP [dm6]	T	C	4.761e^-4	0.961	SYNONYMOUS_CODING CG42708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17014120	2L_17014120_SNP [dm3] 2L_17014120_SNP [dm6]	T	A	4.764e^-4	0.961	UPSTREAM CG6304 INTRON CG6304
3R	6691305	3R_6691305_SNP [dm3] 3R_10865583_SNP [dm6]	A	G	4.768e^-4	0.961	SYNONYMOUS_CODING SelR INTRON SelR
3L	10414414	3L_10414414_SNP [dm3] 3L_10421314_SNP [dm6]	C	T	4.784e^-4	0.961	INTERGENIC
3R	9587893	3R_9587893_SNP [dm3] 3R_13762171_SNP [dm6]	C	T	4.795e^-4	0.961	UTR_3_PRIME CG34383 DOWNSTREAM CG34383 INTRON CG34383
3R	21146888	3R_21146888_SNP [dm3] 3R_25321166_SNP [dm6]	T	A	4.800e^-4	0.961	UTR_3_PRIME CG10562
3R	16667942	3R_16667942_SNP [dm3] 3R_20842220_SNP [dm6]	C	A	4.802e^-4	0.961	UTR_5_PRIME CG15695
3R	14905860	3R_14905860_SNP [dm3] 3R_19080138_SNP [dm6]	G	A	4.808e^-4	0.961	INTRON cdi	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	7811886	2R_7811886_SNP [dm3] 2R_11924381_SNP [dm6]	G	C	4.812e^-4	0.961	INTERGENIC
2R	16763828	2R_16763828_SNP [dm3] 2R_20876323_SNP [dm6]	A	G	4.817e^-4	0.961	INTRON Ipk1
3R	24552386	3R_24552386_SNP [dm3] 3R_28726664_SNP [dm6]	C	T	4.817e^-4	0.961	INTRON htt
2R	14901265	2R_14901265_SNP [dm3] 2R_19013760_SNP [dm6]	C	T	4.824e^-4	0.961	INTERGENIC
3R	14914468	3R_14914468_SNP [dm3] 3R_19088746_SNP [dm6]	G	T	4.829e^-4	0.961	INTRON cdi
3R	22935075	3R_22935075_SNP [dm3] 3R_27109353_SNP [dm6]	C	T	4.840e^-4	0.961	INTRON gb EXON CR45209
3R	19250824	3R_19250824_SNP [dm3] 3R_23425102_SNP [dm6]	T	C	4.843e^-4	0.961	DOWNSTREAM CG43694 INTRON CG4374
2R	14824416	2R_14824416_SNP [dm3] 2R_18936911_SNP [dm6]	A	G	4.851e^-4	0.961	INTRON sano
X	11179812	X_11179812_SNP [dm3] X_11285779_SNP [dm6]	T	C	4.856e^-4	0.961	INTRON CG44422
3L	14840123	3L_14840123_SNP [dm3] 3L_14847023_SNP [dm6]	C	G	4.863e^-4	0.961	INTRON CG17839
2L	1581685	2L_1581685_SNP [dm3] 2L_1581685_SNP [dm6]	T	A	4.863e^-4	0.961	INTRON haf
3R	18007789	3R_18007789_SNP [dm3] 3R_22182067_SNP [dm6]	A	T	4.869e^-4	0.961	INTRON SKIP
2R	19046180	2R_19046180_SNP [dm3] 2R_23158657_SNP [dm6]	C	G	4.870e^-4	0.961	UPSTREAM CG13545 INTRON CG9899
2L	19202627	2L_19202627_SNP [dm3] 2L_19202627_SNP [dm6]	C	T	4.870e^-4	0.961	INTRON drl	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1760833	2L_1760833_SNP [dm3] 2L_1760833_SNP [dm6]	G	C	4.880e^-4	0.961	INTERGENIC
2L	7554769	2L_7554769_SNP [dm3] 2L_7554769_SNP [dm6]	C	A	4.880e^-4	0.961	INTRON RapGAP1
2L	7565198	2L_7565198_SNP [dm3] 2L_7565198_SNP [dm6]	T	G	4.880e^-4	0.961	INTRON RapGAP1
3L	11229662	3L_11229662_SNP [dm3] 3L_11236562_SNP [dm6]	C	T	4.881e^-4	0.961	UPSTREAM Ir68a & 1 other EXON CR44718	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3590475	3L_3590475_SNP [dm3] 3L_3590475_SNP [dm6]	G	C	4.883e^-4	0.961	INTRON Eip63E
X	9093777	X_9093777_SNP [dm3] X_9199744_SNP [dm6]	A	G	4.883e^-4	0.961	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3661720	2L_3661720_SNP [dm3] 2L_3661720_SNP [dm6]	G	A	4.893e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	3515087	3R_3515087_SNP [dm3] 3R_7689365_SNP [dm6]	G	T	4.895e^-4	0.961	INTRON Nlg1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19322579	2R_19322579_DEL [dm3] 2R_23435056_DEL [dm6]	ATGGCTCAAA	A	4.895e^-4	0.961	INTERGENIC
3R	10045341	3R_10045341_SNP [dm3] 3R_14219619_SNP [dm6]	A	T	4.897e^-4	0.961	DOWNSTREAM CG33109 INTRON CG31326
3L	17454584	3L_17454584_SNP [dm3] 3L_17461484_SNP [dm6]	G	A	4.903e^-4	0.961	DOWNSTREAM CR44565 INTERGENIC
X	19355548	X_19355548_SNP [dm3] X_19461515_SNP [dm6]	G	T	4.903e^-4	0.961	INTRON kek5
3R	14904169	3R_14904169_SNP [dm3] 3R_19078447_SNP [dm6]	A	C	4.918e^-4	0.963	INTRON cdi
3R	18986359	3R_18986359_SNP [dm3] 3R_23160637_SNP [dm6]	A	C	4.934e^-4	0.965	SYNONYMOUS_CODING CG13829	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20589232	2L_20589232_SNP [dm3] 2L_20589232_SNP [dm6]	G	A	4.948e^-4	0.966	INTRON CR44909
X	12453149	X_12453149_SNP [dm3] X_12559116_SNP [dm6]	A	T	4.962e^-4	0.966	INTRON CG43921
3R	12209403	3R_12209403_SNP [dm3] 3R_16383681_SNP [dm6]	T	G	4.969e^-4	0.966	INTRON ss	regulatory region REDfly_CRMs
3R	12209413	3R_12209413_SNP [dm3] 3R_16383691_SNP [dm6]	C	T	4.969e^-4	0.966	INTRON ss	regulatory region REDfly_CRMs
3L	7210632	3L_7210632_SNP [dm3] 3L_7217532_SNP [dm6]	A	T	4.977e^-4	0.966	INTERGENIC
2R	13919540	2R_13919540_DEL [dm3] 2R_18032035_DEL [dm6]	TACAAT	T	4.982e^-4	0.966	INTERGENIC
2L	8441215	2L_8441215_SNP [dm3] 2L_8441215_SNP [dm6]	T	C	4.986e^-4	0.966	SYNONYMOUS_CODING mus201
3L	24201277	3L_24201277_MNP [dm3] 3L_24208177_MNP [dm6]	GGG	TTA	4.990e^-4	0.966	INTRON Snap25
2L	20927734	2L_20927734_SNP [dm3] 2L_20927734_SNP [dm6]	T	C	5.005e^-4	0.966	SYNONYMOUS_CODING CG9272	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10569887	3L_10569887_SNP [dm3] 3L_10576787_SNP [dm6]	A	T	5.007e^-4	0.966	INTRON A2bp1
2R	17365170	2R_17365170_SNP [dm3] 2R_21477665_SNP [dm6]	C	T	5.014e^-4	0.966	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19470817	3R_19470817_SNP [dm3] 3R_23645095_SNP [dm6]	A	T	5.022e^-4	0.966	INTRON CG31145
3R	19470820	3R_19470820_SNP [dm3] 3R_23645098_SNP [dm6]	G	A	5.022e^-4	0.966	INTRON CG31145
3L	18143658	3L_18143658_DEL [dm3] 3L_18150558_DEL [dm6]	TCAATTAAATTAT...	T	5.022e^-4	0.966	INTRON CG7330
3L	18143708	3L_18143708_INS [dm3] 3L_18150608_INS [dm6]	T	TATAATATCA	5.022e^-4	0.966	INTRON CG7330
3L	10717909	3L_10717909_INS [dm3] 3L_10724809_INS [dm6]	C	CTC	5.032e^-4	0.966	INTERGENIC
2R	11021533	2R_11021533_SNP [dm3] 2R_15134028_SNP [dm6]	T	C	5.038e^-4	0.966	INTRON chn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	13654401	3R_13654401_INS [dm3] 3R_17828679_INS [dm6]	G	GC	5.049e^-4	0.966	INTRON tinc
2L	5837095	2L_5837095_SNP [dm3] 2L_5837095_SNP [dm6]	C	G	5.050e^-4	0.966	INTRON TrissinR
3L	4079568	3L_4079568_SNP [dm3] 3L_4079568_SNP [dm6]	C	T	5.060e^-4	0.966	INTRON Gad1
3R	8124587	3R_8124587_SNP [dm3] 3R_12298865_SNP [dm6]	G	T	5.063e^-4	0.966	INTRON svp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15161695	2R_15161695_INS [dm3] 2R_19274190_INS [dm6]	T	TTT	5.081e^-4	0.966	INTRON rib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5864459	2L_5864459_SNP [dm3] 2L_5864459_SNP [dm6]	C	A	5.098e^-4	0.966	INTRON rau
3L	1015161	3L_1015161_SNP [dm3] 3L_1015161_SNP [dm6]	A	C	5.098e^-4	0.966	INTRON trio
3L	1015163	3L_1015163_SNP [dm3] 3L_1015163_SNP [dm6]	A	C	5.098e^-4	0.966	INTRON trio
3L	1015507	3L_1015507_SNP [dm3] 3L_1015507_SNP [dm6]	G	A	5.098e^-4	0.966	INTRON trio
3L	16896978	3L_16896978_SNP [dm3] 3L_16903878_SNP [dm6]	G	A	5.098e^-4	0.966	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt
3L	1994772	3L_1994772_SNP [dm3] 3L_1994772_SNP [dm6]	C	T	5.098e^-4	0.966	INTERGENIC
3L	735003	3L_735003_SNP [dm3] 3L_735003_SNP [dm6]	G	A	5.098e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_hkb
3L	735004	3L_735004_SNP [dm3] 3L_735004_SNP [dm6]	T	A	5.098e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_hkb
3R	14065946	3R_14065946_SNP [dm3] 3R_18240224_SNP [dm6]	A	G	5.104e^-4	0.966	SYNONYMOUS_CODING CG7156 UTR_3_PRIME CG7156 DOWNSTREAM repo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	11252806	X_11252806_SNP [dm3] X_11358773_SNP [dm6]	T	C	5.111e^-4	0.966	UPSTREAM Pa1 DOWNSTREAM dsh INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	4523410	2R_4523410_SNP [dm3] 2R_8635905_SNP [dm6]	C	T	5.115e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26321364	3R_26321364_SNP [dm3] 3R_30495642_SNP [dm6]	G	T	5.121e^-4	0.966	INTRON PH4alphaMP	TF binding site mE1_TFBS_inv
3R	2222279	3R_2222279_SNP [dm3] 3R_6396557_SNP [dm6]	A	C	5.141e^-4	0.966	INTRON Dmtn
2L	5906042	2L_5906042_SNP [dm3] 2L_5906042_SNP [dm6]	A	G	5.141e^-4	0.966	EXON CR43808	TF binding site BDTNP1_TFBS_dl
2L	6617645	2L_6617645_SNP [dm3] 2L_6617645_SNP [dm6]	C	T	5.152e^-4	0.966	SYNONYMOUS_CODING CG11320 DOWNSTREAM CG11050	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7229100	3L_7229100_SNP [dm3] 3L_7236000_SNP [dm6]	A	G	5.153e^-4	0.966	DOWNSTREAM CG14826 & 1 other INTERGENIC
X	11186504	X_11186504_SNP [dm3] X_11292471_SNP [dm6]	C	G	5.165e^-4	0.966	INTRON CG44422
3R	26689601	3R_26689601_SNP [dm3] 3R_30863879_SNP [dm6]	T	C	5.167e^-4	0.966	INTERGENIC
3L	15497635	3L_15497635_SNP [dm3] 3L_15504535_SNP [dm6]	C	T	5.179e^-4	0.966	SYNONYMOUS_CODING CG7857 DOWNSTREAM CG7272 & 1 other	TF binding site mE1_TFBS_sens
3R	15945564	3R_15945564_SNP [dm3] 3R_20119842_SNP [dm6]	T	A	5.181e^-4	0.966	INTERGENIC
3R	27711535	3R_27711535_DEL [dm3] 3R_31885813_DEL [dm6]	TGTTT	T	5.191e^-4	0.966	INTRON heph	TF binding site mE1_TFBS_Trl
3R	22288177	3R_22288177_SNP [dm3] 3R_26462455_SNP [dm6]	T	G	5.192e^-4	0.966	INTRON CG5455	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	22678335	3R_22678335_SNP [dm3] 3R_26852613_SNP [dm6]	C	G	5.195e^-4	0.966	INTRON Lerp	TF binding site mE1_TFBS_chinmo
2R	16038502	2R_16038502_SNP [dm3] 2R_20150997_SNP [dm6]	A	C	5.197e^-4	0.966	DOWNSTREAM CR45229 INTERGENIC
2L	5876962	2L_5876962_SNP [dm3] 2L_5876962_SNP [dm6]	C	T	5.202e^-4	0.966	INTRON rau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	11756365	2R_11756365_SNP [dm3] 2R_15868860_SNP [dm6]	A	C	5.203e^-4	0.966	DOWNSTREAM sli INTRON Rif1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	13971199	2L_13971199_SNP [dm3] 2L_13971199_SNP [dm6]	G	T	5.219e^-4	0.966	SYNONYMOUS_CODING NimB5 DOWNSTREAM He	TF binding site mE1_TFBS_cad

By genomic position
Variant impact
Gene name

Microbiota_OTU172 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results