DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.050e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.09781

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.9923	0.0457

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

5814 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	26002844	3R_26002844_SNP [dm3] 3R_30177122_SNP [dm6]	G	A	2.094e^-11	1.948e^-5	UPSTREAM CG15530 INTRON CG1983
3R	26003040	3R_26003040_SNP [dm3] 3R_30177318_SNP [dm6]	A	G	2.094e^-11	1.948e^-5	SYNONYMOUS_CODING CG1983 UPSTREAM CG15530
3R	20002096	3R_20002096_SNP [dm3] 3R_24176374_SNP [dm6]	C	G	7.825e^-11	4.853e^-5	INTRON CG13606
3L	15527214	3L_15527214_SNP [dm3] 3L_15534114_SNP [dm6]	C	G	5.017e^-10	2.333e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	20300761	2L_20300761_SNP [dm3] 2L_20300761_SNP [dm6]	G	A	8.875e^-10	2.471e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	17762033	3R_17762033_SNP [dm3] 3R_21936311_SNP [dm6]	A	G	9.027e^-10	2.471e^-4	INTERGENIC
3L	7086928	3L_7086928_SNP [dm3] 3L_7093828_SNP [dm6]	C	A	9.296e^-10	2.471e^-4	UTR_3_PRIME Cpr65Ec UPSTREAM form3	TF binding site mE1_TFBS_HSA
3R	17761988	3R_17761988_SNP [dm3] 3R_21936266_SNP [dm6]	A	T	1.276e^-9	2.913e^-4	INTERGENIC
3L	15527485	3L_15527485_SNP [dm3] 3L_15534385_SNP [dm6]	G	A	1.409e^-9	2.913e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	3465738	X_3465738_SNP [dm3] X_3571705_SNP [dm6]	C	T	5.494e^-9	9.376e^-4	NON_SYNONYMOUS_CODING ppk8 UTR_3_PRIME CG2875 UPSTREAM CG32791 DOWNSTREAM CG2875	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	17195303	3L_17195303_SNP [dm3] 3L_17202203_SNP [dm6]	C	T	6.132e^-9	9.376e^-4	INTRON Rbp6
3R	14239486	3R_14239486_INS [dm3] 3R_18413764_INS [dm6]	A	AGGATCT	6.998e^-9	9.376e^-4	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15400434	3R_15400434_SNP [dm3] 3R_19574712_SNP [dm6]	T	C	7.556e^-9	9.376e^-4	INTRON Dys
3R	15400448	3R_15400448_SNP [dm3] 3R_19574726_SNP [dm6]	G	A	7.556e^-9	9.376e^-4	INTRON Dys
3R	14239453	3R_14239453_SNP [dm3] 3R_18413731_SNP [dm6]	T	G	8.258e^-9	9.376e^-4	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14238195	3R_14238195_SNP [dm3] 3R_18412473_SNP [dm6]	G	C	8.410e^-9	9.376e^-4	UPSTREAM CG10864 INTRON CG31122	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	12583640	2L_12583640_INS [dm3] 2L_12583640_INS [dm6]	T	TT	8.567e^-9	9.376e^-4	DOWNSTREAM CR44596 & 1 other INTERGENIC
3R	20095838	3R_20095838_INS [dm3] 3R_24270116_INS [dm6]	C	CT	1.322e^-8	0.001	INTRON jar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	25728462	3R_25728462_SNP [dm3] 3R_29902740_SNP [dm6]	C	G	1.323e^-8	0.001	UTR_3_PRIME CG31038 DOWNSTREAM CG15517
3R	14238710	3R_14238710_SNP [dm3] 3R_18412988_SNP [dm6]	C	T	1.464e^-8	0.001	UPSTREAM CG31122 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	17761394	3R_17761394_SNP [dm3] 3R_21935672_SNP [dm6]	C	T	1.598e^-8	0.001	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15540482	3L_15540482_SNP [dm3] 3L_15547382_SNP [dm6]	C	T	1.833e^-8	0.001	INTRON CrebA	TF binding site BDTNP1_TFBS_hb
3R	26002153	3R_26002153_SNP [dm3] 3R_30176431_SNP [dm6]	C	T	1.934e^-8	0.001	UTR_3_PRIME CG1983
X	8129876	X_8129876_SNP [dm3] X_8235843_SNP [dm6]	C	T	1.996e^-8	0.001	INTRON sdt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15532629	3L_15532629_SNP [dm3] 3L_15539529_SNP [dm6]	G	C	2.053e^-8	0.001	INTRON CrebA
3R	26003031	3R_26003031_SNP [dm3] 3R_30177309_SNP [dm6]	G	A	2.125e^-8	0.001	SYNONYMOUS_CODING CG1983 UPSTREAM CG15530
3R	14495614	3R_14495614_SNP [dm3] 3R_18669892_SNP [dm6]	T	A	2.155e^-8	0.001	UPSTREAM CR45028 DOWNSTREAM CG31229 INTRON CG7702	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
4	279108	4_279108_SNP [dm3] 4_258482_SNP [dm6]	C	G	2.482e^-8	0.002	INTRON RhoGAP102A
3R	20002101	3R_20002101_SNP [dm3] 3R_24176379_SNP [dm6]	A	G	2.635e^-8	0.002	INTRON CG13606
3R	14238633	3R_14238633_SNP [dm3] 3R_18412911_SNP [dm6]	T	C	2.683e^-8	0.002	UPSTREAM CG31122 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	13134480	2L_13134480_SNP [dm3] 2L_13134480_SNP [dm6]	C	T	2.842e^-8	0.002	SYNONYMOUS_CODING CG5122
3L	15532671	3L_15532671_SNP [dm3] 3L_15539571_SNP [dm6]	A	G	2.941e^-8	0.002	INTRON CrebA
3R	14798787	3R_14798787_SNP [dm3] 3R_18973065_SNP [dm6]	T	C	3.461e^-8	0.002	SYNONYMOUS_CODING CG42613 UTR_3_PRIME CG43732	TF binding site mE1_TFBS_chinmo
3R	14239045	3R_14239045_SNP [dm3] 3R_18413323_SNP [dm6]	A	T	3.650e^-8	0.002	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	18042878	2R_18042878_SNP [dm3] 2R_22155373_SNP [dm6]	G	A	4.389e^-8	0.002	INTRON a	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14238923	3R_14238923_SNP [dm3] 3R_18413201_SNP [dm6]	T	A	5.724e^-8	0.003	UPSTREAM CG31122 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	14239216	3R_14239216_SNP [dm3] 3R_18413494_SNP [dm6]	C	A	6.640e^-8	0.003	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	26490804	3R_26490804_SNP [dm3] 3R_30665082_SNP [dm6]	A	T	7.460e^-8	0.004	EXON CR45191
3R	16671543	3R_16671543_SNP [dm3] 3R_20845821_SNP [dm6]	G	A	8.229e^-8	0.004	DOWNSTREAM CG15695 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19248968	X_19248968_SNP [dm3] X_19354935_SNP [dm6]	G	A	8.533e^-8	0.004	INTRON kek5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	14239061	3R_14239061_SNP [dm3] 3R_18413339_SNP [dm6]	T	A	8.604e^-8	0.004	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	14239063	3R_14239063_SNP [dm3] 3R_18413341_SNP [dm6]	A	T	8.604e^-8	0.004	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	9868366	3R_9868366_SNP [dm3] 3R_14042644_SNP [dm6]	A	T	8.909e^-8	0.004	INTERGENIC
3R	14239046	3R_14239046_SNP [dm3] 3R_18413324_SNP [dm6]	T	G	1.012e^-7	0.004	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	8129901	X_8129901_SNP [dm3] X_8235868_SNP [dm6]	C	T	1.058e^-7	0.004	INTRON sdt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8129911	X_8129911_SNP [dm3] X_8235878_SNP [dm6]	C	G	1.058e^-7	0.004	SPLICE_SITE_REGION sdt INTRON sdt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26002253	3R_26002253_SNP [dm3] 3R_30176531_SNP [dm6]	C	A	1.169e^-7	0.004	NON_SYNONYMOUS_CODING CG1983
2R	7468950	2R_7468950_SNP [dm3] 2R_11581445_SNP [dm6]	G	C	1.184e^-7	0.004	INTRON tou	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	7468972	2R_7468972_SNP [dm3] 2R_11581467_SNP [dm6]	C	A	1.184e^-7	0.004	INTRON tou	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	9485940	2L_9485940_SNP [dm3] 2L_9485940_SNP [dm6]	G	C	1.185e^-7	0.004	INTERGENIC
3R	17772582	3R_17772582_SNP [dm3] 3R_21946860_SNP [dm6]	T	C	1.284e^-7	0.005	INTERGENIC
3R	14239084	3R_14239084_SNP [dm3] 3R_18413362_SNP [dm6]	C	T	1.347e^-7	0.005	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	6738569	3R_6738569_SNP [dm3] 3R_10912847_SNP [dm6]	T	A	1.359e^-7	0.005	INTERGENIC
3L	15535006	3L_15535006_SNP [dm3] 3L_15541906_SNP [dm6]	A	G	1.614e^-7	0.005	INTRON CrebA
3R	13811250	3R_13811250_SNP [dm3] 3R_17985528_SNP [dm6]	T	A	1.616e^-7	0.005	INTRON cpo
3R	21504044	3R_21504044_SNP [dm3] 3R_25678322_SNP [dm6]	C	T	1.759e^-7	0.006	SYNONYMOUS_CODING CG4730 UPSTREAM CG5039 DOWNSTREAM CG4743	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_sens
3R	14239002	3R_14239002_MNP [dm3] 3R_18413280_MNP [dm6]	ATC	TAA	1.830e^-7	0.006	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	14239006	3R_14239006_SNP [dm3] 3R_18413284_SNP [dm6]	A	G	1.830e^-7	0.006	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	14239015	3R_14239015_SNP [dm3] 3R_18413293_SNP [dm6]	G	A	1.830e^-7	0.006	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	3943729	3L_3943729_SNP [dm3] 3L_3943729_SNP [dm6]	T	C	1.868e^-7	0.006	SYNONYMOUS_CODING CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	14642336	2R_14642336_SNP [dm3] 2R_18754831_SNP [dm6]	G	A	2.094e^-7	0.006	UPSTREAM Cyp12b2 DOWNSTREAM Hs3st-A INTERGENIC
2L	8185707	2L_8185707_SNP [dm3] 2L_8185707_SNP [dm6]	C	T	2.104e^-7	0.006	INTRON Piezo
3R	21502780	3R_21502780_SNP [dm3] 3R_25677058_SNP [dm6]	C	T	2.215e^-7	0.006	UTR_3_PRIME Lgr3 UPSTREAM CR45225 DOWNSTREAM CG4730
3R	17373071	3R_17373071_SNP [dm3] 3R_21547349_SNP [dm6]	T	C	2.233e^-7	0.006	INTERGENIC
3R	6745205	3R_6745205_SNP [dm3] 3R_10919483_SNP [dm6]	T	C	2.281e^-7	0.006	INTERGENIC
3R	14238898	3R_14238898_SNP [dm3] 3R_18413176_SNP [dm6]	T	C	2.294e^-7	0.006	UPSTREAM CG31122 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2R	11203393	2R_11203393_SNP [dm3] 2R_15315888_SNP [dm6]	T	A	2.407e^-7	0.007	SYNONYMOUS_CODING mus210
3R	14238960	3R_14238960_SNP [dm3] 3R_18413238_SNP [dm6]	C	A	2.533e^-7	0.007	UPSTREAM CG31122 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	16134382	3L_16134382_DEL [dm3] 3L_16141282_DEL [dm6]	CGA	C	2.568e^-7	0.007	INTRON CG5151 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15526642	3L_15526642_SNP [dm3] 3L_15533542_SNP [dm6]	G	T	2.617e^-7	0.007	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_inv mE1_TFBS_Trl
3R	11698474	3R_11698474_SNP [dm3] 3R_15872752_SNP [dm6]	T	C	2.713e^-7	0.007	INTRON CG31183
2R	14642297	2R_14642297_SNP [dm3] 2R_18754792_SNP [dm6]	A	G	2.719e^-7	0.007	UPSTREAM Cyp12b2 DOWNSTREAM Hs3st-A INTERGENIC
3R	13415655	3R_13415655_SNP [dm3] 3R_17589933_SNP [dm6]	A	C	2.826e^-7	0.007	INTERGENIC
3R	9981136	3R_9981136_SNP [dm3] 3R_14155414_SNP [dm6]	C	A	2.840e^-7	0.007	SYNONYMOUS_CODING CG31533 UPSTREAM CR44215	TF binding site mE1_TFBS_sens
3L	9340969	3L_9340969_SNP [dm3] 3L_9347869_SNP [dm6]	C	T	2.855e^-7	0.007	SYNONYMOUS_CODING PGRP-LC UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC
3R	20095523	3R_20095523_SNP [dm3] 3R_24269801_SNP [dm6]	C	A	2.921e^-7	0.007	INTRON jar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5245790	3L_5245790_SNP [dm3] 3L_5252690_SNP [dm6]	C	T	2.968e^-7	0.007	INTRON shep
3R	20095751	3R_20095751_SNP [dm3] 3R_24270029_SNP [dm6]	C	T	2.991e^-7	0.007	INTRON jar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	26491206	3R_26491206_SNP [dm3] 3R_30665484_SNP [dm6]	T	C	3.045e^-7	0.007	INTRON CR45191
X	8129900	X_8129900_SNP [dm3] X_8235867_SNP [dm6]	C	T	3.055e^-7	0.007	INTRON sdt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21488823	3R_21488823_SNP [dm3] 3R_25663101_SNP [dm6]	A	T	3.063e^-7	0.007	UPSTREAM CR45208 INTRON RASSF8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	17219792	X_17219792_SNP [dm3] X_17325759_SNP [dm6]	T	A	3.091e^-7	0.007	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	22748845	3R_22748845_SNP [dm3] 3R_26923123_SNP [dm6]	C	T	3.106e^-7	0.007	INTRON sda
3L	11343912	3L_11343912_SNP [dm3] 3L_11350812_SNP [dm6]	A	G	3.193e^-7	0.007	INTERGENIC
2L	20462297	2L_20462297_SNP [dm3] 2L_20462297_SNP [dm6]	G	A	3.227e^-7	0.007	SYNONYMOUS_CODING CG2493 DOWNSTREAM Cdc23	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	14239200	3R_14239200_SNP [dm3] 3R_18413478_SNP [dm6]	A	G	3.278e^-7	0.007	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	11698488	3R_11698488_SNP [dm3] 3R_15872766_SNP [dm6]	G	A	3.346e^-7	0.007	INTRON CG31183
3L	11343875	3L_11343875_SNP [dm3] 3L_11350775_SNP [dm6]	T	C	3.511e^-7	0.007	INTERGENIC
3R	14239065	3R_14239065_SNP [dm3] 3R_18413343_SNP [dm6]	A	C	3.544e^-7	0.007	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	14609861	3L_14609861_SNP [dm3] 3L_14616761_SNP [dm6]	T	C	3.697e^-7	0.008	INTRON shd
X	7897467	X_7897467_SNP [dm3] X_8003434_SNP [dm6]	A	T	3.706e^-7	0.008	INTRON Tbh
3R	17779242	3R_17779242_SNP [dm3] 3R_21953520_SNP [dm6]	A	G	3.715e^-7	0.008	INTRON Eip93F
2R	11283543	2R_11283543_SNP [dm3] 2R_15396038_SNP [dm6]	T	C	3.856e^-7	0.008	INTERGENIC
2R	8490251	2R_8490251_SNP [dm3] 2R_12602746_SNP [dm6]	A	G	4.012e^-7	0.008	INTRON Amph
3R	20095472	3R_20095472_SNP [dm3] 3R_24269750_SNP [dm6]	G	A	4.205e^-7	0.008	INTRON jar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8272531	2L_8272531_SNP [dm3] 2L_8272531_SNP [dm6]	A	G	4.261e^-7	0.008	UTR_5_PRIME Btk29A INTRON Btk29A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11343874	3L_11343874_SNP [dm3] 3L_11350774_SNP [dm6]	C	T	4.620e^-7	0.009	INTERGENIC
3R	20095492	3R_20095492_SNP [dm3] 3R_24269770_SNP [dm6]	G	A	4.871e^-7	0.009	INTRON jar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20095505	3R_20095505_SNP [dm3] 3R_24269783_SNP [dm6]	G	T	4.871e^-7	0.009	INTRON jar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14239542	3R_14239542_INS [dm3] 3R_18413820_INS [dm6]	C	CCATCAGAAAAGTAAACTAG...	4.876e^-7	0.009	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl

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By genomic position
Variant impact
Gene name

Microbiota_OTU170 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results