DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.809e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.0188987
In_3R_Mo	0.0749795

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	5.0955	0.0783

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1768 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	8371319	2L_8371319_INS [dm3] 2L_8371319_INS [dm6]	A	ATCTA	1.302e^-6	0.946	UPSTREAM CR45341 INTRON CG17292
3R	9973092	3R_9973092_SNP [dm3] 3R_14147370_SNP [dm6]	A	T	2.989e^-6	0.946	INTERGENIC
2R	2882279	2R_2882279_SNP [dm3] 2R_6994774_SNP [dm6]	T	C	3.267e^-6	0.946	DOWNSTREAM CG30159 INTRON Tsp42Ea	TF binding site mE1_TFBS_Trl
2L	8398451	2L_8398451_DEL [dm3] 2L_8398451_DEL [dm6]	CAATAC	C	6.146e^-6	0.946	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
3L	5350075	3L_5350075_SNP [dm3] 3L_5356975_SNP [dm6]	A	G	8.389e^-6	0.946	UTR_3_PRIME Klp64D UPSTREAM tRNA:CR32421 DOWNSTREAM tRNA:CR32420
X	16226823	X_16226823_SNP [dm3] X_16332790_SNP [dm6]	A	C	9.196e^-6	0.946	UPSTREAM CG9921 & 1 other INTRON CG9921	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	4357029	3L_4357029_SNP [dm3] 3L_4357029_SNP [dm6]	C	G	1.163e^-5	0.946	INTRON Cip4
3R	9855212	3R_9855212_SNP [dm3] 3R_14029490_SNP [dm6]	T	A	1.167e^-5	0.946	SYNONYMOUS_CODING Cyp6d5 INTRON rdx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2R	2570058	2R_2570058_SNP [dm3] 2R_6682553_SNP [dm6]	C	T	1.178e^-5	0.946	UPSTREAM CG15909 DOWNSTREAM CR44164 INTRON CG9422 EXON CR44165
X	3136845	X_3136845_SNP [dm3] X_3242812_SNP [dm6]	A	G	1.257e^-5	0.946	UTR_3_PRIME ng1 UPSTREAM ng3 INTRON dnc
3L	4722156	3L_4722156_SNP [dm3] 3L_4722156_SNP [dm6]	T	A	1.304e^-5	0.946	INTRON RhoGEF64C
3L	7221082	3L_7221082_SNP [dm3] 3L_7227982_SNP [dm6]	T	A	1.500e^-5	0.946	INTERGENIC
X	3875217	X_3875217_SNP [dm3] X_3981184_SNP [dm6]	G	C	1.563e^-5	0.946	INTERGENIC
2L	15759696	2L_15759696_SNP [dm3] 2L_15759696_SNP [dm6]	G	A	1.578e^-5	0.946	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	21882791	2L_21882791_SNP [dm3] 2L_21882791_SNP [dm6]	G	C	1.596e^-5	0.946	INTERGENIC
3R	11181742	3R_11181742_SNP [dm3] 3R_15356020_SNP [dm6]	C	T	1.672e^-5	0.946	SYNONYMOUS_CODING Atg4b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14239542	3R_14239542_INS [dm3] 3R_18413820_INS [dm6]	C	CCATCAGAAAAGTAAACTAG...	1.907e^-5	0.946	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	15486296	X_15486296_INS [dm3] X_15592263_INS [dm6]	G	GAGG	1.944e^-5	0.946	INTRON CG9220	TF binding site BDTNP1_TFBS_dl
3R	14856001	3R_14856001_SNP [dm3] 3R_19030279_SNP [dm6]	T	C	2.010e^-5	0.946	SYNONYMOUS_CODING Prp18 DOWNSTREAM P5cr	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	8471036	X_8471036_SNP [dm3] X_8577003_SNP [dm6]	G	T	2.030e^-5	0.946	INTRON CG12065
2R	6726485	2R_6726485_SNP [dm3] 2R_10838980_SNP [dm6]	A	C	2.033e^-5	0.946	UPSTREAM CG7686 DOWNSTREAM CG30015 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12175390	3L_12175390_SNP [dm3] 3L_12182290_SNP [dm6]	T	C	2.145e^-5	0.946	SYNONYMOUS_CODING CAH2
3L	12173728	3L_12173728_SNP [dm3] 3L_12180628_SNP [dm6]	T	C	2.270e^-5	0.946	INTRON CAH2
3L	16872533	3L_16872533_SNP [dm3] 3L_16879433_SNP [dm6]	C	T	2.309e^-5	0.946	DOWNSTREAM CG32170 INTRON Lmpt
X	3136851	X_3136851_SNP [dm3] X_3242818_SNP [dm6]	G	C	2.425e^-5	0.946	UTR_3_PRIME ng1 UPSTREAM ng3 INTRON dnc
2L	11295413	2L_11295413_SNP [dm3] 2L_11295413_SNP [dm6]	C	A	2.491e^-5	0.946	INTERGENIC
2R	6555381	2R_6555381_SNP [dm3] 2R_10667876_SNP [dm6]	C	T	2.527e^-5	0.946	INTERGENIC
3R	16005337	3R_16005337_INS [dm3] 3R_20179615_INS [dm6]	A	ATGTA	2.865e^-5	0.946	INTERGENIC	TF binding site mE1_TFBS_sbb
3L	10241531	3L_10241531_INS [dm3] 3L_10248431_INS [dm6]	C	CTTTTTTTGTT...	2.947e^-5	0.946	DOWNSTREAM CR44539 EXON CR44540
3R	9868203	3R_9868203_SNP [dm3] 3R_14042481_SNP [dm6]	G	C	3.031e^-5	0.946	INTERGENIC
2L	20336420	2L_20336420_SNP [dm3] 2L_20336420_SNP [dm6]	G	A	3.033e^-5	0.946	INTRON spir
3L	16673300	3L_16673300_SNP [dm3] 3L_16680200_SNP [dm6]	G	A	3.040e^-5	0.946	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_dl
2R	17772302	2R_17772302_INS [dm3] 2R_21884797_INS [dm6]	A	AA	3.041e^-5	0.946	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11292363	2L_11292363_SNP [dm3] 2L_11292363_SNP [dm6]	G	A	3.120e^-5	0.946	INTERGENIC
X	17346119	X_17346119_SNP [dm3] X_17452086_SNP [dm6]	A	G	3.140e^-5	0.946	SYNONYMOUS_CODING CG8568
3R	12922495	3R_12922495_SNP [dm3] 3R_17096773_SNP [dm6]	A	G	3.199e^-5	0.946	INTRON cher
2R	5801867	2R_5801867_SNP [dm3] 2R_9914362_SNP [dm6]	G	A	3.199e^-5	0.946	UTR_3_PRIME Mef2 DOWNSTREAM Etf-QO
3R	15992223	3R_15992223_SNP [dm3] 3R_20166501_SNP [dm6]	A	G	3.287e^-5	0.946	INTERGENIC
3L	7395815	3L_7395815_SNP [dm3] 3L_7402715_SNP [dm6]	C	A	3.329e^-5	0.946	INTRON CG8560	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12306884	3L_12306884_SNP [dm3] 3L_12313784_SNP [dm6]	C	T	3.381e^-5	0.946	INTERGENIC
2L	20331677	2L_20331677_SNP [dm3] 2L_20331677_SNP [dm6]	A	G	3.447e^-5	0.946	INTRON spir
3R	16005541	3R_16005541_SNP [dm3] 3R_20179819_SNP [dm6]	G	T	3.457e^-5	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8098939	2L_8098939_SNP [dm3] 2L_8098939_SNP [dm6]	T	C	3.654e^-5	0.946	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	16673400	3L_16673400_SNP [dm3] 3L_16680300_SNP [dm6]	G	A	3.742e^-5	0.946	INTRON Lasp & 1 other
3L	8115095	3L_8115095_SNP [dm3] 3L_8121995_SNP [dm6]	T	A	3.869e^-5	0.946	NON_SYNONYMOUS_CODING ldbr DOWNSTREAM msk	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8113189	2L_8113189_SNP [dm3] 2L_8113189_SNP [dm6]	C	A	3.988e^-5	0.946	UTR_3_PRIME Bsg
3R	25451499	3R_25451499_SNP [dm3] 3R_29625777_SNP [dm6]	A	G	3.995e^-5	0.946	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10287406	3L_10287406_SNP [dm3] 3L_10294306_SNP [dm6]	C	G	4.087e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8895277	3L_8895277_SNP [dm3] 3L_8902177_SNP [dm6]	G	A	4.395e^-5	0.946	UPSTREAM TrpA1 INTRON TrpA1
3L	12478358	3L_12478358_SNP [dm3] 3L_12485258_SNP [dm6]	C	T	4.400e^-5	0.946	UPSTREAM CG33725 & 1 other INTRON CG33725	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18358953	X_18358953_SNP [dm3] X_18464920_SNP [dm6]	C	G	4.421e^-5	0.946	INTRON CG32547	TF binding site mE1_TFBS_chinmo
2R	16042681	2R_16042681_SNP [dm3] 2R_20155176_SNP [dm6]	C	A	4.423e^-5	0.946	INTERGENIC
2L	8371537	2L_8371537_SNP [dm3] 2L_8371537_SNP [dm6]	T	A	4.513e^-5	0.946	UPSTREAM CR45341 & 1 other INTRON CG17292
3L	10712198	3L_10712198_SNP [dm3] 3L_10719098_SNP [dm6]	G	A	4.736e^-5	0.946	INTERGENIC
2L	4073253	2L_4073253_SNP [dm3] 2L_4073253_SNP [dm6]	C	G	4.757e^-5	0.946	INTRON ed
2L	8234171	2L_8234171_SNP [dm3] 2L_8234171_SNP [dm6]	C	T	4.771e^-5	0.946	INTRON Pvr
3R	11342771	3R_11342771_DEL [dm3] 3R_15517049_DEL [dm6]	TCTCCACAGACT...	T	4.779e^-5	0.946	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	5582697	X_5582697_SNP [dm3] X_5688664_SNP [dm6]	C	G	4.999e^-5	0.946	SYNONYMOUS_CODING CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	11804001	3L_11804001_SNP [dm3] 3L_11810901_SNP [dm6]	A	T	5.023e^-5	0.946	SYNONYMOUS_CODING CG42255
3L	18820962	3L_18820962_SNP [dm3] 3L_18827862_SNP [dm6]	C	T	5.127e^-5	0.946	SYNONYMOUS_CODING Cat DOWNSTREAM Indy	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	18531658	3R_18531658_SNP [dm3] 3R_22705936_SNP [dm6]	G	A	5.141e^-5	0.946	SYNONYMOUS_CODING CG13842
3L	20587062	3L_20587062_SNP [dm3] 3L_20593962_SNP [dm6]	T	C	5.350e^-5	0.946	INTERGENIC
3L	3823377	3L_3823377_SNP [dm3] 3L_3823377_SNP [dm6]	T	C	5.367e^-5	0.946	INTRON enc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	12386148	3R_12386148_SNP [dm3] 3R_16560426_SNP [dm6]	C	G	5.450e^-5	0.946	INTRON CG42342	TF binding site BDTNP1_TFBS_twi
2L	3238057	2L_3238057_SNP [dm3] 2L_3238057_SNP [dm6]	C	T	5.473e^-5	0.946	INTERGENIC
X	9507713	X_9507713_SNP [dm3] X_9613680_SNP [dm6]	C	G	5.527e^-5	0.946	INTRON CG42797
X	9507717	X_9507717_SNP [dm3] X_9613684_SNP [dm6]	T	G	5.527e^-5	0.946	INTRON CG42797
2L	8372336	2L_8372336_SNP [dm3] 2L_8372336_SNP [dm6]	C	A	5.586e^-5	0.946	UPSTREAM CG17292 INTRON CG17292
3R	26620810	3R_26620810_SNP [dm3] 3R_30795088_SNP [dm6]	C	T	5.806e^-5	0.946	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11296751	2L_11296751_SNP [dm3] 2L_11296751_SNP [dm6]	T	A	5.902e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	25264539	3R_25264539_SNP [dm3] 3R_29438817_SNP [dm6]	T	A	6.004e^-5	0.946	INTRON Ptp99A
3L	10427905	3L_10427905_SNP [dm3] 3L_10434805_SNP [dm6]	C	T	6.040e^-5	0.946	UPSTREAM Ir67c INTERGENIC
3L	7200704	3L_7200704_SNP [dm3] 3L_7207604_SNP [dm6]	C	G	6.050e^-5	0.946	INTERGENIC
2R	11472329	2R_11472329_SNP [dm3] 2R_15584824_SNP [dm6]	T	A	6.080e^-5	0.946	INTERGENIC
3R	25069064	3R_25069064_SNP [dm3] 3R_29243342_SNP [dm6]	A	G	6.116e^-5	0.946	INTRON CG31445
2L	16794067	2L_16794067_SNP [dm3] 2L_16794067_SNP [dm6]	G	A	6.175e^-5	0.946	UPSTREAM Ugt36Ba DOWNSTREAM CG17928 INTERGENIC	TF binding site mE1_TFBS_Trl
X	6728895	X_6728895_SNP [dm3] X_6834862_SNP [dm6]	T	C	6.177e^-5	0.946	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12210089	3R_12210089_SNP [dm3] 3R_16384367_SNP [dm6]	C	T	6.200e^-5	0.946	INTRON ss	regulatory region REDfly_CRMs
3R	5307674	3R_5307674_SNP [dm3] 3R_9481952_SNP [dm6]	C	G	6.235e^-5	0.946	INTRON CG16779
X	16160435	X_16160435_SNP [dm3] X_16266402_SNP [dm6]	A	G	6.248e^-5	0.946	SYNONYMOUS_CODING CG12507 DOWNSTREAM kat80
2R	13505616	2R_13505616_DEL [dm3] 2R_17618111_DEL [dm6]	CC	C	6.332e^-5	0.946	UPSTREAM CG44403 INTRON CG10936
X	20847874	X_20847874_SNP [dm3] X_20976847_SNP [dm6]	T	C	6.366e^-5	0.946	INTERGENIC
X	8471071	X_8471071_SNP [dm3] X_8577038_SNP [dm6]	C	A	6.586e^-5	0.946	INTRON CG12065
3R	25451580	3R_25451580_SNP [dm3] 3R_29625858_SNP [dm6]	C	A	6.642e^-5	0.946	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25451581	3R_25451581_SNP [dm3] 3R_29625859_SNP [dm6]	C	A	6.642e^-5	0.946	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	10047101	3R_10047101_SNP [dm3] 3R_14221379_SNP [dm6]	C	T	6.651e^-5	0.946	SYNONYMOUS_CODING CG33109 DOWNSTREAM Sp212
3R	25460307	3R_25460307_SNP [dm3] 3R_29634585_SNP [dm6]	T	C	6.698e^-5	0.946	INTRON Dop1R2
2L	8353554	2L_8353554_SNP [dm3] 2L_8353554_SNP [dm6]	C	T	6.718e^-5	0.946	INTRON Mur29B	TF binding site mE1_TFBS_sens
2L	6488827	2L_6488827_SNP [dm3] 2L_6488827_SNP [dm6]	A	C	6.720e^-5	0.946	UPSTREAM epsilonCOP & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12478303	3L_12478303_SNP [dm3] 3L_12485203_SNP [dm6]	G	T	6.774e^-5	0.946	UPSTREAM CG33725 & 1 other INTRON CG33725	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8378512	2L_8378512_SNP [dm3] 2L_8378512_SNP [dm6]	T	C	6.828e^-5	0.946	SYNONYMOUS_CODING Aats-ala DOWNSTREAM CG17294	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1508198	2L_1508198_SNP [dm3] 2L_1508198_SNP [dm6]	C	T	6.843e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10414181	3L_10414181_SNP [dm3] 3L_10421081_SNP [dm6]	T	C	6.940e^-5	0.946	INTERGENIC
2L	13433604	2L_13433604_SNP [dm3] 2L_13433604_SNP [dm6]	G	C	6.987e^-5	0.946	INTRON CG42784
3L	7921417	3L_7921417_SNP [dm3] 3L_7928317_SNP [dm6]	G	T	7.157e^-5	0.946	SYNONYMOUS_CODING syd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20336415	2L_20336415_SNP [dm3] 2L_20336415_SNP [dm6]	C	G	7.333e^-5	0.946	INTRON spir
3R	15051899	3R_15051899_SNP [dm3] 3R_19226177_SNP [dm6]	T	G	7.390e^-5	0.946	DOWNSTREAM CG11703 INTRON vib	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	12897186	3R_12897186_SNP [dm3] 3R_17071464_SNP [dm6]	T	A	7.400e^-5	0.946	SYNONYMOUS_CODING Ns1
3R	12897210	3R_12897210_SNP [dm3] 3R_17071488_SNP [dm6]	G	A	7.400e^-5	0.946	SYNONYMOUS_CODING Ns1
3R	12904883	3R_12904883_SNP [dm3] 3R_17079161_SNP [dm6]	A	G	7.422e^-5	0.946	INTRON Keap1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_Trl mE1_TFBS_zfh1
3R	1754723	3R_1754723_SNP [dm3] 3R_5929001_SNP [dm6]	A	C	7.509e^-5	0.946	INTRON CG34113
2R	18889465	2R_18889465_SNP [dm3] 2R_23001942_SNP [dm6]	A	T	7.605e^-5	0.946	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	14420567	3L_14420567_SNP [dm3] 3L_14427467_SNP [dm6]	C	T	7.731e^-5	0.946	UPSTREAM bbg INTRON bbg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7395804	3L_7395804_SNP [dm3] 3L_7402704_SNP [dm6]	C	A	7.847e^-5	0.946	INTRON CG8560	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12896174	3R_12896174_SNP [dm3] 3R_17070452_SNP [dm6]	A	G	7.877e^-5	0.946	DOWNSTREAM Ns1 & 1 other INTERGENIC
X	9179276	X_9179276_SNP [dm3] X_9285243_SNP [dm6]	C	A	7.889e^-5	0.946	INTRON lz	TF binding site BDTNP1_TFBS_dl
3R	11108010	3R_11108010_SNP [dm3] 3R_15282288_SNP [dm6]	A	G	7.975e^-5	0.946	INTRON Tm1	TF binding site mE1_TFBS_Trl
2L	1510210	2L_1510210_SNP [dm3] 2L_1510210_SNP [dm6]	T	C	8.089e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	25981552	3R_25981552_SNP [dm3] 3R_30155830_SNP [dm6]	G	T	8.130e^-5	0.946	SPLICE_SITE_REGION CG11498 INTRON CG11498	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8399403	2L_8399403_SNP [dm3] 2L_8399403_SNP [dm6]	T	C	8.187e^-5	0.946	INTRON CG13386
2R	11472294	2R_11472294_SNP [dm3] 2R_15584789_SNP [dm6]	A	C	8.218e^-5	0.946	INTERGENIC
3L	9647191	3L_9647191_SNP [dm3] 3L_9654091_SNP [dm6]	G	C	8.228e^-5	0.946	INTRON fry & 1 other
3R	14287653	3R_14287653_SNP [dm3] 3R_18461931_SNP [dm6]	T	A	8.290e^-5	0.946	INTRON fru
3R	14239414	3R_14239414_SNP [dm3] 3R_18413692_SNP [dm6]	C	T	8.304e^-5	0.946	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18018879	X_18018879_SNP [dm3] X_18124846_SNP [dm6]	T	G	8.470e^-5	0.946	UTR_3_PRIME CG32553 DOWNSTREAM mir-969
2L	17797068	2L_17797068_SNP [dm3] 2L_17797068_SNP [dm6]	T	A	8.516e^-5	0.946	INTRON CadN2
2L	11292759	2L_11292759_SNP [dm3] 2L_11292759_SNP [dm6]	C	T	8.558e^-5	0.946	INTERGENIC
2L	6533329	2L_6533329_SNP [dm3] 2L_6533329_SNP [dm6]	A	T	8.587e^-5	0.946	INTRON eya
3R	13418787	3R_13418787_SNP [dm3] 3R_17593065_SNP [dm6]	A	T	8.622e^-5	0.946	INTERGENIC
X	9507494	X_9507494_SNP [dm3] X_9613461_SNP [dm6]	A	T	8.629e^-5	0.946	INTRON CG42797
3L	10446543	3L_10446543_SNP [dm3] 3L_10453443_SNP [dm6]	A	T	8.646e^-5	0.946	INTERGENIC
2L	1509860	2L_1509860_DEL [dm3] 2L_1509860_DEL [dm6]	TT	T	8.651e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3R	9973102	3R_9973102_SNP [dm3] 3R_14147380_SNP [dm6]	C	T	8.702e^-5	0.946	INTERGENIC
3R	26578754	3R_26578754_SNP [dm3] 3R_30753032_SNP [dm6]	T	C	8.748e^-5	0.946	INTERGENIC
3L	13582601	3L_13582601_SNP [dm3] 3L_13589501_SNP [dm6]	A	G	8.764e^-5	0.946	INTRON bru-3
3L	4852528	3L_4852528_SNP [dm3] 3L_4852528_SNP [dm6]	A	G	8.807e^-5	0.946	UPSTREAM CG32237 INTERGENIC
3L	3823388	3L_3823388_SNP [dm3] 3L_3823388_SNP [dm6]	T	C	8.870e^-5	0.946	INTRON enc	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	18271464	2R_18271464_DEL [dm3] 2R_22383959_DEL [dm6]	AA	A	8.915e^-5	0.946	INTRON CG13506	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	10892618	2L_10892618_SNP [dm3] 2L_10892618_SNP [dm6]	G	C	8.973e^-5	0.946	INTERGENIC
2R	5801871	2R_5801871_SNP [dm3] 2R_9914366_SNP [dm6]	T	C	9.237e^-5	0.946	UTR_3_PRIME Mef2 DOWNSTREAM Etf-QO
2L	12779647	2L_12779647_SNP [dm3] 2L_12779647_SNP [dm6]	G	A	9.330e^-5	0.946	INTERGENIC
2R	8622821	2R_8622821_SNP [dm3] 2R_12735316_SNP [dm6]	T	A	9.395e^-5	0.946	INTRON CG42663
3L	21079359	3L_21079359_SNP [dm3] 3L_21086259_SNP [dm6]	T	G	9.403e^-5	0.946	INTRON ko	regulatory region REDfly_CRMs
2L	20327422	2L_20327422_SNP [dm3] 2L_20327422_SNP [dm6]	T	C	9.431e^-5	0.946	INTRON spir
2L	8246892	2L_8246892_SNP [dm3] 2L_8246892_SNP [dm6]	C	T	9.447e^-5	0.946	SYNONYMOUS_CODING CG8086 INTRON CG8086
3R	26634046	3R_26634046_SNP [dm3] 3R_30808324_SNP [dm6]	G	T	9.450e^-5	0.946	UPSTREAM cindr DOWNSTREAM dj-1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	4135101	3L_4135101_SNP [dm3] 3L_4135101_SNP [dm6]	C	T	9.467e^-5	0.946	SYNONYMOUS_CODING RfC4 UPSTREAM ens	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7279456	3L_7279456_SNP [dm3] 3L_7286356_SNP [dm6]	T	A	9.535e^-5	0.946	INTRON unc-13-4A
3R	9868260	3R_9868260_SNP [dm3] 3R_14042538_SNP [dm6]	A	T	9.538e^-5	0.946	INTERGENIC
3L	2413171	3L_2413171_SNP [dm3] 3L_2413171_SNP [dm6]	G	T	9.558e^-5	0.946	UPSTREAM CG45186 INTRON CG45186
2L	11192334	2L_11192334_SNP [dm3] 2L_11192334_SNP [dm6]	T	A	9.564e^-5	0.946	INTRON Ca-beta
2L	8374586	2L_8374586_SNP [dm3] 2L_8374586_SNP [dm6]	A	G	9.571e^-5	0.946	SYNONYMOUS_CODING Wdr82 DOWNSTREAM CG17292 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	11513091	3L_11513091_SNP [dm3] 3L_11519991_SNP [dm6]	A	G	9.642e^-5	0.946	SYNONYMOUS_CODING Fuca
3L	11513097	3L_11513097_SNP [dm3] 3L_11519997_SNP [dm6]	A	G	9.642e^-5	0.946	SYNONYMOUS_CODING Fuca
2R	10796875	2R_10796875_SNP [dm3] 2R_14909370_SNP [dm6]	C	A	9.652e^-5	0.946	INTRON CG10249
2R	5979670	2R_5979670_SNP [dm3] 2R_10092165_SNP [dm6]	C	T	9.718e^-5	0.946	INTRON CG2269
2R	18889461	2R_18889461_INS [dm3] 2R_23001938_INS [dm6]	A	ATTATTTC	9.773e^-5	0.946	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	10306385	2L_10306385_SNP [dm3] 2L_10306385_SNP [dm6]	G	A	1.000e^-4	0.946	UPSTREAM CG4968 INTRON CG5390	TF binding site mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_zfh1
2L	10306350	2L_10306350_INS [dm3] 2L_10306350_INS [dm6]	A	ACA	1.005e^-4	0.946	UPSTREAM CG4968 INTRON CG5390	TF binding site mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_zfh1
3R	15048116	3R_15048116_SNP [dm3] 3R_19222394_SNP [dm6]	T	C	1.013e^-4	0.946	INTRON vib
2R	14120972	2R_14120972_SNP [dm3] 2R_18233467_SNP [dm6]	G	T	1.015e^-4	0.946	UTR_5_PRIME fj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6661988	2R_6661988_SNP [dm3] 2R_10774483_SNP [dm6]	G	A	1.018e^-4	0.946	INTRON CG33144
4	121889	4_121889_SNP [dm3] 4_101263_SNP [dm6]	C	A	1.020e^-4	0.946	UTR_3_PRIME pan INTRON pan	transposable element FlyBase
X	3536745	X_3536745_SNP [dm3] X_3642712_SNP [dm6]	G	C	1.023e^-4	0.946	INTRON AstA-R1
3L	1657831	3L_1657831_SNP [dm3] 3L_1657831_SNP [dm6]	G	C	1.028e^-4	0.946	SYNONYMOUS_CODING CG7971
3R	26672782	3R_26672782_SNP [dm3] 3R_30847060_SNP [dm6]	C	T	1.034e^-4	0.946	INTERGENIC
3R	15162710	3R_15162710_SNP [dm3] 3R_19336988_SNP [dm6]	C	T	1.036e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14239486	3R_14239486_INS [dm3] 3R_18413764_INS [dm6]	A	AGGATCT	1.039e^-4	0.946	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	16173809	X_16173809_SNP [dm3] X_16279776_SNP [dm6]	C	A	1.044e^-4	0.946	UTR_5_PRIME eas INTRON eas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	2498298	2L_2498298_SNP [dm3] 2L_2498298_SNP [dm6]	C	T	1.051e^-4	0.946	UTR_3_PRIME oaf DOWNSTREAM oaf
2L	4187058	2L_4187058_SNP [dm3] 2L_4187058_SNP [dm6]	C	T	1.063e^-4	0.946	SYNONYMOUS_CODING CG31961 DOWNSTREAM CR44057	TF binding site mE1_TFBS_sens
3R	26634048	3R_26634048_SNP [dm3] 3R_30808326_SNP [dm6]	C	A	1.063e^-4	0.946	UPSTREAM cindr DOWNSTREAM dj-1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	20331596	2L_20331596_SNP [dm3] 2L_20331596_SNP [dm6]	G	C	1.068e^-4	0.946	INTRON spir
3L	13582668	3L_13582668_INS [dm3] 3L_13589568_INS [dm6]	A	ACA	1.082e^-4	0.946	INTRON bru-3
3L	3537485	3L_3537485_SNP [dm3] 3L_3537485_SNP [dm6]	T	C	1.088e^-4	0.946	INTRON Eip63E
3R	11342729	3R_11342729_SNP [dm3] 3R_15517007_SNP [dm6]	A	C	1.095e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	11341833	3R_11341833_SNP [dm3] 3R_15516111_SNP [dm6]	T	C	1.114e^-4	0.946	INTERGENIC
3L	16079669	3L_16079669_SNP [dm3] 3L_16086569_SNP [dm6]	G	T	1.115e^-4	0.946	NON_SYNONYMOUS_CODING Taspase1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_sens
3L	7501123	3L_7501123_SNP [dm3] 3L_7508023_SNP [dm6]	C	T	1.120e^-4	0.946	INTERGENIC
3L	1491978	3L_1491978_SNP [dm3] 3L_1491978_SNP [dm6]	C	T	1.123e^-4	0.946	SPLICE_SITE_REGION CG12084 INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	18686709	3R_18686709_SNP [dm3] 3R_22860987_SNP [dm6]	G	A	1.128e^-4	0.946	INTERGENIC
3L	3585555	3L_3585555_SNP [dm3] 3L_3585555_SNP [dm6]	C	T	1.130e^-4	0.946	INTRON Eip63E
3R	26633995	3R_26633995_SNP [dm3] 3R_30808273_SNP [dm6]	G	A	1.132e^-4	0.946	UPSTREAM cindr DOWNSTREAM dj-1beta INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad
2L	11297483	2L_11297483_SNP [dm3] 2L_11297483_SNP [dm6]	A	G	1.133e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	7279507	3L_7279507_SNP [dm3] 3L_7286407_SNP [dm6]	A	G	1.149e^-4	0.946	INTRON unc-13-4A
2L	17936426	2L_17936426_SNP [dm3] 2L_17936426_SNP [dm6]	T	C	1.182e^-4	0.946	INTERGENIC
2R	6231377	2R_6231377_SNP [dm3] 2R_10343872_SNP [dm6]	C	G	1.194e^-4	0.946	INTRON CG42732
3R	26680400	3R_26680400_SNP [dm3] 3R_30854678_SNP [dm6]	A	C	1.194e^-4	0.946	DOWNSTREAM tll INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	17239548	X_17239548_SNP [dm3] X_17345515_SNP [dm6]	A	G	1.202e^-4	0.946	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10402026	3R_10402026_DEL [dm3] 3R_14576304_DEL [dm6]	TC	T	1.203e^-4	0.946	UPSTREAM CG7987 & 1 other DOWNSTREAM CG44094 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3585589	3L_3585589_SNP [dm3] 3L_3585589_SNP [dm6]	T	C	1.208e^-4	0.946	INTRON Eip63E
3R	9868366	3R_9868366_SNP [dm3] 3R_14042644_SNP [dm6]	A	T	1.214e^-4	0.946	INTERGENIC
X	884822	X_884822_SNP [dm3] X_990789_SNP [dm6]	G	A	1.214e^-4	0.946	NON_SYNONYMOUS_CODING CG18823
3L	16080449	3L_16080449_SNP [dm3] 3L_16087349_SNP [dm6]	G	A	1.225e^-4	0.946	DOWNSTREAM CG5235 INTRON Taspase1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5979659	2R_5979659_SNP [dm3] 2R_10092154_SNP [dm6]	G	A	1.230e^-4	0.946	INTRON CG2269
X	9168817	X_9168817_SNP [dm3] X_9274784_SNP [dm6]	T	C	1.233e^-4	0.946	DOWNSTREAM c11.1 INTRON CG16892 EXON snoRNA:CG16892-a	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	18889510	2R_18889510_SNP [dm3] 2R_23001987_SNP [dm6]	C	A	1.234e^-4	0.946	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	20336245	2L_20336245_SNP [dm3] 2L_20336245_SNP [dm6]	G	A	1.234e^-4	0.946	INTRON spir
3L	10444654	3L_10444654_SNP [dm3] 3L_10451554_SNP [dm6]	A	C	1.247e^-4	0.946	INTERGENIC
3L	1657743	3L_1657743_SNP [dm3] 3L_1657743_SNP [dm6]	C	T	1.263e^-4	0.946	NON_SYNONYMOUS_CODING CG7971
3L	1657795	3L_1657795_SNP [dm3] 3L_1657795_SNP [dm6]	T	C	1.263e^-4	0.946	SYNONYMOUS_CODING CG7971
3L	11303552	3L_11303552_SNP [dm3] 3L_11310452_SNP [dm6]	T	C	1.266e^-4	0.946	INTERGENIC
3L	3992892	3L_3992892_SNP [dm3] 3L_3992892_SNP [dm6]	A	T	1.287e^-4	0.946	UTR_3_PRIME scrt
3R	15709360	3R_15709360_SNP [dm3] 3R_19883638_SNP [dm6]	C	T	1.287e^-4	0.946	SYNONYMOUS_CODING Pk92B	TF binding site mE1_TFBS_cad
2L	15461848	2L_15461848_SNP [dm3] 2L_15461848_SNP [dm6]	A	G	1.288e^-4	0.946	INTERGENIC
3L	16078609	3L_16078609_SNP [dm3] 3L_16085509_SNP [dm6]	A	G	1.288e^-4	0.946	UTR_3_PRIME Taspase1 DOWNSTREAM Taspase1 & 1 other
3L	9646792	3L_9646792_SNP [dm3] 3L_9653692_SNP [dm6]	T	C	1.295e^-4	0.946	INTRON fry & 1 other
2R	17772173	2R_17772173_SNP [dm3] 2R_21884668_SNP [dm6]	T	C	1.298e^-4	0.946	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3473837	3L_3473837_SNP [dm3] 3L_3473837_SNP [dm6]	C	T	1.302e^-4	0.946	INTRON CG42324
3L	3473840	3L_3473840_SNP [dm3] 3L_3473840_SNP [dm6]	C	A	1.302e^-4	0.946	INTRON CG42324
X	21952338	X_21952338_SNP [dm3] X_22550502_SNP [dm6]	T	C	1.305e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14239280	3R_14239280_SNP [dm3] 3R_18413558_SNP [dm6]	T	A	1.307e^-4	0.946	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7066958	2R_7066958_SNP [dm3] 2R_11179453_SNP [dm6]	G	T	1.309e^-4	0.946	INTRON shn
2L	7875982	2L_7875982_SNP [dm3] 2L_7875982_SNP [dm6]	C	T	1.311e^-4	0.946	INTRON spz3
3R	14043969	3R_14043969_SNP [dm3] 3R_18218247_SNP [dm6]	C	A	1.316e^-4	0.946	UTR_3_PRIME CG7183 DOWNSTREAM CG14314
2R	18270428	2R_18270428_SNP [dm3] 2R_22382923_SNP [dm6]	G	A	1.317e^-4	0.946	UPSTREAM CG13506 DOWNSTREAM wrapper INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
3R	23911903	3R_23911903_SNP [dm3] 3R_28086181_SNP [dm6]	A	C	1.318e^-4	0.946	UTR_3_PRIME CG34362 DOWNSTREAM CG34362 INTRON CG34362	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8370098	2L_8370098_SNP [dm3] 2L_8370098_SNP [dm6]	A	T	1.327e^-4	0.946	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
3R	12908638	3R_12908638_SNP [dm3] 3R_17082916_SNP [dm6]	A	G	1.332e^-4	0.946	NON_SYNONYMOUS_CODING kuk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15794685	X_15794685_SNP [dm3] X_15900652_SNP [dm6]	A	G	1.335e^-4	0.946	INTRON shi
3L	5464417	3L_5464417_SNP [dm3] 3L_5471317_SNP [dm6]	A	G	1.348e^-4	0.946	INTERGENIC
3R	14240386	3R_14240386_SNP [dm3] 3R_18414664_SNP [dm6]	T	G	1.351e^-4	0.946	UTR_3_PRIME fru DOWNSTREAM fru
3L	3585583	3L_3585583_SNP [dm3] 3L_3585583_SNP [dm6]	T	A	1.352e^-4	0.946	INTRON Eip63E
3L	3585601	3L_3585601_SNP [dm3] 3L_3585601_SNP [dm6]	T	A	1.352e^-4	0.946	INTRON Eip63E
X	19301615	X_19301615_SNP [dm3] X_19407582_SNP [dm6]	A	C	1.354e^-4	0.946	INTRON kek5
3L	10438887	3L_10438887_SNP [dm3] 3L_10445787_SNP [dm6]	A	T	1.355e^-4	0.946	INTERGENIC
2L	13258341	2L_13258341_SNP [dm3] 2L_13258341_SNP [dm6]	C	A	1.362e^-4	0.946	UTR_3_PRIME CG31851 DOWNSTREAM CG31728 & 2 others
2L	8370140	2L_8370140_SNP [dm3] 2L_8370140_SNP [dm6]	C	T	1.364e^-4	0.946	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
2R	13380619	2R_13380619_SNP [dm3] 2R_17493114_SNP [dm6]	C	T	1.364e^-4	0.946	UTR_3_PRIME NT5E-2 UPSTREAM CG30103	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2L	2051124	2L_2051124_SNP [dm3] 2L_2051124_SNP [dm6]	T	G	1.383e^-4	0.946	INTERGENIC
2R	10254359	2R_10254359_DEL [dm3] 2R_14366854_DEL [dm6]	TT	T	1.386e^-4	0.946	UTR_5_PRIME CG34442 DOWNSTREAM CG34184
2R	20026348	2R_20026348_SNP [dm3] 2R_24138825_SNP [dm6]	T	C	1.389e^-4	0.946	UPSTREAM CG4065 & 1 other EXON CR44826	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	12779642	2L_12779642_SNP [dm3] 2L_12779642_SNP [dm6]	G	A	1.393e^-4	0.946	INTERGENIC
3R	17689923	3R_17689923_SNP [dm3] 3R_21864201_SNP [dm6]	G	A	1.398e^-4	0.946	UPSTREAM lsn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25460457	3R_25460457_SNP [dm3] 3R_29634735_SNP [dm6]	C	G	1.402e^-4	0.946	INTRON Dop1R2
3L	4272119	3L_4272119_SNP [dm3] 3L_4272119_SNP [dm6]	T	C	1.411e^-4	0.946	SYNONYMOUS_CODING CG1273
X	13768849	X_13768849_SNP [dm3] X_13874816_SNP [dm6]	T	A	1.420e^-4	0.946	INTRON mamo
3L	7921512	3L_7921512_INS [dm3] 3L_7928412_INS [dm6]	T	TCAAGT	1.421e^-4	0.946	INTRON syd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25455291	3R_25455291_SNP [dm3] 3R_29629569_SNP [dm6]	C	T	1.426e^-4	0.946	DOWNSTREAM Dop1R2 INTERGENIC
2R	18889467	2R_18889467_DEL [dm3] 2R_23001944_DEL [dm6]	TACAACA	T	1.429e^-4	0.946	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	5692639	3L_5692639_SNP [dm3] 3L_5699539_SNP [dm6]	C	G	1.432e^-4	0.946	INTRON sif	TF binding site mE1_TFBS_chinmo
2L	6493301	2L_6493301_SNP [dm3] 2L_6493301_SNP [dm6]	C	T	1.437e^-4	0.946	SYNONYMOUS_CODING CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18889506	2R_18889506_SNP [dm3] 2R_23001983_SNP [dm6]	G	A	1.453e^-4	0.946	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	5464405	3L_5464405_SNP [dm3] 3L_5471305_SNP [dm6]	C	A	1.460e^-4	0.946	INTERGENIC
3R	13822801	3R_13822801_DEL [dm3] 3R_17997079_DEL [dm6]	TCGA	CT	1.464e^-4	0.946	INTRON cpo
3R	2190474	3R_2190474_INS [dm3] 3R_6364752_INS [dm6]	G	GG	1.468e^-4	0.946	UTR_3_PRIME CG42724 DOWNSTREAM CG42724 INTRON CG42724
3R	25264633	3R_25264633_SNP [dm3] 3R_29438911_SNP [dm6]	T	C	1.479e^-4	0.946	INTRON Ptp99A
2R	17941815	2R_17941815_SNP [dm3] 2R_22054310_SNP [dm6]	A	T	1.482e^-4	0.946	INTERGENIC
2L	9430951	2L_9430951_SNP [dm3] 2L_9430951_SNP [dm6]	G	A	1.486e^-4	0.946	UTR_5_PRIME FucTB UPSTREAM FucTB & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26621322	3R_26621322_SNP [dm3] 3R_30795600_SNP [dm6]	A	G	1.488e^-4	0.946	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	26621332	3R_26621332_SNP [dm3] 3R_30795610_SNP [dm6]	G	C	1.488e^-4	0.946	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11183990	2L_11183990_SNP [dm3] 2L_11183990_SNP [dm6]	C	T	1.499e^-4	0.946	INTRON Ca-beta
3R	11107876	3R_11107876_SNP [dm3] 3R_15282154_SNP [dm6]	C	T	1.505e^-4	0.946	INTRON Tm1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12726982	2R_12726982_SNP [dm3] 2R_16839477_SNP [dm6]	T	C	1.507e^-4	0.946	EXON CR43650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14655280	2R_14655280_SNP [dm3] 2R_18767775_SNP [dm6]	T	A	1.507e^-4	0.946	INTRON Mctp
X	19891315	X_19891315_SNP [dm3] X_19997282_SNP [dm6]	G	A	1.507e^-4	0.946	INTERGENIC
2L	16793694	2L_16793694_SNP [dm3] 2L_16793694_SNP [dm6]	T	C	1.512e^-4	0.946	UPSTREAM Ugt36Ba DOWNSTREAM CG17928 INTERGENIC
2L	20331580	2L_20331580_SNP [dm3] 2L_20331580_SNP [dm6]	T	G	1.516e^-4	0.946	INTRON spir
3R	14943798	3R_14943798_SNP [dm3] 3R_19118076_SNP [dm6]	T	C	1.518e^-4	0.946	INTRON CG6040
3L	3823392	3L_3823392_SNP [dm3] 3L_3823392_SNP [dm6]	G	C	1.524e^-4	0.946	INTRON enc	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	7409797	3R_7409797_SNP [dm3] 3R_11584075_SNP [dm6]	C	G	1.528e^-4	0.946	INTRON wkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14586529	2R_14586529_SNP [dm3] 2R_18699024_SNP [dm6]	C	A	1.529e^-4	0.946	INTRON Sik3
3R	25982817	3R_25982817_SNP [dm3] 3R_30157095_SNP [dm6]	A	G	1.536e^-4	0.946	INTRON CG11498	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3846156	3L_3846156_SNP [dm3] 3L_3846156_SNP [dm6]	C	G	1.540e^-4	0.946	UPSTREAM Awh INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	3474380	X_3474380_SNP [dm3] X_3580347_SNP [dm6]	A	G	1.544e^-4	0.946	INTRON AstA-R1
2L	8433904	2L_8433904_SNP [dm3] 2L_8433904_SNP [dm6]	C	T	1.546e^-4	0.946	UPSTREAM grk DOWNSTREAM D12 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1657807	3L_1657807_SNP [dm3] 3L_1657807_SNP [dm6]	G	T	1.553e^-4	0.946	SYNONYMOUS_CODING CG7971
2L	20327414	2L_20327414_SNP [dm3] 2L_20327414_SNP [dm6]	A	C	1.555e^-4	0.946	INTRON spir
3R	19607174	3R_19607174_SNP [dm3] 3R_23781452_SNP [dm6]	A	G	1.556e^-4	0.946	START_GAINED Nup98-96 UTR_5_PRIME Nup98-96 UPSTREAM mbc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	11192164	2L_11192164_SNP [dm3] 2L_11192164_SNP [dm6]	A	G	1.560e^-4	0.946	INTRON Ca-beta
3L	7497052	3L_7497052_SNP [dm3] 3L_7503952_SNP [dm6]	A	T	1.566e^-4	0.946	INTERGENIC
3R	14849401	3R_14849401_SNP [dm3] 3R_19023679_SNP [dm6]	A	G	1.572e^-4	0.946	UPSTREAM CG14286 INTRON CG6005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14943493	3R_14943493_SNP [dm3] 3R_19117771_SNP [dm6]	T	C	1.595e^-4	0.946	INTRON CG6040
2L	8352415	2L_8352415_SNP [dm3] 2L_8352415_SNP [dm6]	A	G	1.595e^-4	0.946	INTRON Mur29B
3L	10441942	3L_10441942_SNP [dm3] 3L_10448842_SNP [dm6]	G	A	1.597e^-4	0.946	INTERGENIC
3R	10401993	3R_10401993_SNP [dm3] 3R_14576271_SNP [dm6]	C	A	1.616e^-4	0.946	UPSTREAM CG7987 & 1 other DOWNSTREAM CG44094 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7486617	3L_7486617_SNP [dm3] 3L_7493517_SNP [dm6]	C	A	1.622e^-4	0.946	DOWNSTREAM Cyp4d8 & 1 other INTERGENIC
3R	25460244	3R_25460244_SNP [dm3] 3R_29634522_SNP [dm6]	T	C	1.624e^-4	0.946	INTRON Dop1R2
3R	14287646	3R_14287646_INS [dm3] 3R_18461924_INS [dm6]	C	TA	1.624e^-4	0.946	INTRON fru
3R	14239354	3R_14239354_DEL [dm3] 3R_18413632_DEL [dm6]	TTT	T	1.627e^-4	0.946	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	2570019	2R_2570019_SNP [dm3] 2R_6682514_SNP [dm6]	G	A	1.628e^-4	0.946	UPSTREAM CG15909 DOWNSTREAM CR44165 & 1 other INTRON CG9422
2R	20515299	2R_20515299_SNP [dm3] 2R_24627776_SNP [dm6]	T	C	1.628e^-4	0.946	DOWNSTREAM snoRNA:Me18S-G393 INTRON CG13594
2L	10924854	2L_10924854_SNP [dm3] 2L_10924854_SNP [dm6]	G	A	1.629e^-4	0.946	INTRON dpr2
X	16889570	X_16889570_SNP [dm3] X_16995537_SNP [dm6]	C	G	1.656e^-4	0.946	INTRON CG45002	TF binding site mE1_TFBS_HSA
2L	6525314	2L_6525314_SNP [dm3] 2L_6525314_SNP [dm6]	A	C	1.676e^-4	0.946	INTRON CG31637
3L	12478396	3L_12478396_SNP [dm3] 3L_12485296_SNP [dm6]	C	T	1.694e^-4	0.946	UPSTREAM CG33725 & 1 other INTRON CG33725	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12478409	3L_12478409_SNP [dm3] 3L_12485309_SNP [dm6]	A	T	1.694e^-4	0.946	UPSTREAM CG33725 & 1 other INTRON CG33725	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3823411	2R_3823411_SNP [dm3] 2R_7935906_SNP [dm6]	C	T	1.695e^-4	0.946	SYNONYMOUS_CODING drosha DOWNSTREAM CG8728	TF binding site mE1_TFBS_sens
2L	4431301	2L_4431301_DEL [dm3] 2L_4431301_DEL [dm6]	GTTG	G	1.709e^-4	0.946	INTRON CG15431
3R	25460436	3R_25460436_SNP [dm3] 3R_29634714_SNP [dm6]	C	G	1.712e^-4	0.946	INTRON Dop1R2
3L	9719614	3L_9719614_SNP [dm3] 3L_9726514_SNP [dm6]	G	C	1.715e^-4	0.946	SYNONYMOUS_CODING defl UPSTREAM Naa60	TF binding site mE1_TFBS_chinmo
3L	4270638	3L_4270638_SNP [dm3] 3L_4270638_SNP [dm6]	G	A	1.721e^-4	0.946	INTRON CG1273	TF binding site mE1_TFBS_cad
3L	4270799	3L_4270799_SNP [dm3] 3L_4270799_SNP [dm6]	T	C	1.721e^-4	0.946	INTRON CG1273	TF binding site mE1_TFBS_cad
3L	4271647	3L_4271647_SNP [dm3] 3L_4271647_SNP [dm6]	C	T	1.721e^-4	0.946	INTRON CG1273
X	6945721	X_6945721_SNP [dm3] X_7051688_SNP [dm6]	C	T	1.731e^-4	0.946	INTRON CG12541
2L	7875907	2L_7875907_SNP [dm3] 2L_7875907_SNP [dm6]	T	A	1.733e^-4	0.946	INTRON spz3
3L	2559730	3L_2559730_SNP [dm3] 3L_2559730_SNP [dm6]	C	T	1.741e^-4	0.946	INTRON msn
2L	5261010	2L_5261010_SNP [dm3] 2L_5261010_SNP [dm6]	G	A	1.749e^-4	0.946	INTRON tkv
2R	16545238	2R_16545238_SNP [dm3] 2R_20657733_SNP [dm6]	T	G	1.753e^-4	0.946	UPSTREAM tRNA:CR30155 DOWNSTREAM tRNA:CR30211 INTRON Lrt	TF binding site mE1_TFBS_cad
2L	4161294	2L_4161294_SNP [dm3] 2L_4161294_SNP [dm6]	C	T	1.766e^-4	0.946	INTERGENIC
2L	4161297	2L_4161297_SNP [dm3] 2L_4161297_SNP [dm6]	A	G	1.772e^-4	0.946	INTERGENIC
2R	6226803	2R_6226803_SNP [dm3] 2R_10339298_SNP [dm6]	T	C	1.781e^-4	0.946	SPLICE_SITE_REGION CG42732 INTRON CG42732
X	19734580	X_19734580_SNP [dm3] X_19840547_SNP [dm6]	G	T	1.784e^-4	0.946	INTRON pico
2L	8398435	2L_8398435_SNP [dm3] 2L_8398435_SNP [dm6]	C	A	1.794e^-4	0.946	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
3R	9854753	3R_9854753_SNP [dm3] 3R_14029031_SNP [dm6]	T	C	1.796e^-4	0.946	UPSTREAM Cyp6d5 INTRON rdx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
3R	5307689	3R_5307689_SNP [dm3] 3R_9481967_SNP [dm6]	C	A	1.799e^-4	0.946	INTRON CG16779
3R	16433515	3R_16433515_SNP [dm3] 3R_20607793_SNP [dm6]	G	T	1.800e^-4	0.946	INTRON bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11440746	2R_11440746_SNP [dm3] 2R_15553241_SNP [dm6]	C	G	1.805e^-4	0.946	INTERGENIC
2L	14374736	2L_14374736_SNP [dm3] 2L_14374736_SNP [dm6]	G	A	1.807e^-4	0.946	INTERGENIC
3R	2282359	3R_2282359_SNP [dm3] 3R_6456637_SNP [dm6]	C	T	1.808e^-4	0.946	UTR_5_PRIME CG9727 UPSTREAM Zif & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	25264625	3R_25264625_SNP [dm3] 3R_29438903_SNP [dm6]	A	C	1.811e^-4	0.946	INTRON Ptp99A
X	4651773	X_4651773_SNP [dm3] X_4757740_SNP [dm6]	T	C	1.818e^-4	0.946	INTERGENIC
2L	3380176	2L_3380176_SNP [dm3] 2L_3380176_SNP [dm6]	T	C	1.824e^-4	0.946	INTERGENIC
3L	3080672	3L_3080672_SNP [dm3] 3L_3080672_SNP [dm6]	T	A	1.832e^-4	0.946	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	17671766	3L_17671766_SNP [dm3] 3L_17678666_SNP [dm6]	C	G	1.839e^-4	0.946	INTRON CG34251
3L	11801733	3L_11801733_SNP [dm3] 3L_11808633_SNP [dm6]	C	T	1.845e^-4	0.946	SYNONYMOUS_CODING CG42255
3L	14229590	3L_14229590_INS [dm3] 3L_14236490_INS [dm6]	C	CT	1.847e^-4	0.946	UPSTREAM CG7906 & 1 other INTERGENIC
3L	3031708	3L_3031708_SNP [dm3] 3L_3031708_SNP [dm6]	A	G	1.854e^-4	0.946	INTERGENIC
3L	13582584	3L_13582584_SNP [dm3] 3L_13589484_SNP [dm6]	T	A	1.855e^-4	0.946	INTRON bru-3
2R	8876287	2R_8876287_SNP [dm3] 2R_12988782_SNP [dm6]	T	A	1.856e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12064463	3L_12064463_SNP [dm3] 3L_12071363_SNP [dm6]	A	G	1.864e^-4	0.946	INTRON Sema-5c	TF binding site mE1_TFBS_chinmo
3R	25460827	3R_25460827_SNP [dm3] 3R_29635105_SNP [dm6]	C	T	1.869e^-4	0.946	INTRON Dop1R2
2L	6525313	2L_6525313_SNP [dm3] 2L_6525313_SNP [dm6]	G	C	1.873e^-4	0.946	INTRON CG31637
2L	10931643	2L_10931643_SNP [dm3] 2L_10931643_SNP [dm6]	T	A	1.892e^-4	0.946	INTRON dpr2
3L	5797623	3L_5797623_SNP [dm3] 3L_5804523_SNP [dm6]	T	C	1.898e^-4	0.946	NON_SYNONYMOUS_CODING CG42272 INTRON S6k	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7485253	3L_7485253_SNP [dm3] 3L_7492153_SNP [dm6]	C	T	1.902e^-4	0.946	SYNONYMOUS_CODING Cyp316a1
2R	6662082	2R_6662082_SNP [dm3] 2R_10774577_SNP [dm6]	A	G	1.907e^-4	0.946	INTRON CG33144
3R	2279962	3R_2279962_SNP [dm3] 3R_6454240_SNP [dm6]	T	C	1.928e^-4	0.946	SYNONYMOUS_CODING CG9727
3R	14287661	3R_14287661_SNP [dm3] 3R_18461939_SNP [dm6]	A	C	1.928e^-4	0.946	INTRON fru
3R	1754625	3R_1754625_SNP [dm3] 3R_5928903_SNP [dm6]	A	T	1.928e^-4	0.946	INTRON CG34113
3R	18680061	3R_18680061_SNP [dm3] 3R_22854339_SNP [dm6]	A	T	1.930e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	11295162	2L_11295162_SNP [dm3] 2L_11295162_SNP [dm6]	A	T	1.933e^-4	0.946	INTERGENIC
X	19301475	X_19301475_INS [dm3] X_19407442_INS [dm6]	G	GG	1.937e^-4	0.946	INTRON kek5
3R	15292653	3R_15292653_SNP [dm3] 3R_19466931_SNP [dm6]	A	G	1.939e^-4	0.946	INTRON Dys
3R	9964607	3R_9964607_SNP [dm3] 3R_14138885_SNP [dm6]	A	G	1.949e^-4	0.946	INTERGENIC
X	18020891	X_18020891_DEL [dm3] X_18126858_DEL [dm6]	TATTGTGGTCCTGGAAAACC...	A	1.949e^-4	0.946	UTR_5_PRIME CG32553
X	4203352	X_4203352_SNP [dm3] X_4309319_SNP [dm6]	T	G	1.949e^-4	0.946	INTERGENIC
3R	14287649	3R_14287649_SNP [dm3] 3R_18461927_SNP [dm6]	C	A	1.955e^-4	0.946	INTRON fru
3R	14287651	3R_14287651_SNP [dm3] 3R_18461929_SNP [dm6]	G	A	1.955e^-4	0.946	INTRON fru
2L	21882765	2L_21882765_SNP [dm3] 2L_21882765_SNP [dm6]	A	G	1.975e^-4	0.946	INTERGENIC
3L	13582688	3L_13582688_SNP [dm3] 3L_13589588_SNP [dm6]	C	G	1.975e^-4	0.946	INTRON bru-3
3L	7732289	3L_7732289_SNP [dm3] 3L_7739189_SNP [dm6]	C	T	1.983e^-4	0.946	INTRON CG32373 & 1 other
3L	911184	3L_911184_SNP [dm3] 3L_911184_SNP [dm6]	T	G	1.985e^-4	0.946	UTR_3_PRIME nerfin-1	regulatory region REDfly_CRMs
3R	26199432	3R_26199432_SNP [dm3] 3R_30373710_SNP [dm6]	G	A	1.985e^-4	0.946	INTERGENIC
3R	12905900	3R_12905900_SNP [dm3] 3R_17080178_SNP [dm6]	C	A	1.991e^-4	0.946	UPSTREAM kuk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	15981979	3R_15981979_SNP [dm3] 3R_20156257_SNP [dm6]	T	C	1.993e^-4	0.946	INTERGENIC
2L	8367595	2L_8367595_SNP [dm3] 2L_8367595_SNP [dm6]	G	A	1.993e^-4	0.946	SYNONYMOUS_CODING Pp2A-29B	TF binding site mE1_TFBS_cad
2R	8876288	2R_8876288_SNP [dm3] 2R_12988783_SNP [dm6]	C	T	2.001e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16724536	3L_16724536_SNP [dm3] 3L_16731436_SNP [dm6]	A	T	2.012e^-4	0.946	UPSTREAM Dbp73D INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8370131	2L_8370131_SNP [dm3] 2L_8370131_SNP [dm6]	T	A	2.016e^-4	0.946	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
2L	8370138	2L_8370138_SNP [dm3] 2L_8370138_SNP [dm6]	C	G	2.016e^-4	0.946	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
X	22058728	X_22058728_SNP [dm3] X_22656892_SNP [dm6]	A	T	2.022e^-4	0.946	UPSTREAM CR44997 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11513094	3L_11513094_SNP [dm3] 3L_11519994_SNP [dm6]	A	G	2.025e^-4	0.946	SYNONYMOUS_CODING Fuca
3R	25980219	3R_25980219_SNP [dm3] 3R_30154497_SNP [dm6]	A	T	2.039e^-4	0.946	INTRON CG11498	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	11360743	3R_11360743_SNP [dm3] 3R_15535021_SNP [dm6]	A	T	2.040e^-4	0.946	SYNONYMOUS_CODING CG18522	TF binding site mE1_TFBS_chinmo
3L	3585262	3L_3585262_SNP [dm3] 3L_3585262_SNP [dm6]	C	T	2.044e^-4	0.946	INTRON Eip63E
3L	610880	3L_610880_SNP [dm3] 3L_610880_SNP [dm6]	T	C	2.055e^-4	0.946	INTERGENIC
2L	17936412	2L_17936412_SNP [dm3] 2L_17936412_SNP [dm6]	A	G	2.059e^-4	0.946	INTERGENIC
2L	17936427	2L_17936427_SNP [dm3] 2L_17936427_SNP [dm6]	G	T	2.059e^-4	0.946	INTERGENIC
2L	13080118	2L_13080118_SNP [dm3] 2L_13080118_SNP [dm6]	C	T	2.068e^-4	0.946	INTERGENIC
2L	8374640	2L_8374640_SNP [dm3] 2L_8374640_SNP [dm6]	A	T	2.082e^-4	0.946	SYNONYMOUS_CODING Wdr82 DOWNSTREAM CG17292 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	16953178	2L_16953178_SNP [dm3] 2L_16953178_SNP [dm6]	C	G	2.084e^-4	0.946	INTERGENIC
2L	20327389	2L_20327389_SNP [dm3] 2L_20327389_SNP [dm6]	A	C	2.093e^-4	0.946	INTRON spir
2L	20328771	2L_20328771_SNP [dm3] 2L_20328771_SNP [dm6]	G	A	2.093e^-4	0.946	INTRON spir	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	4161305	2L_4161305_SNP [dm3] 2L_4161305_SNP [dm6]	C	T	2.095e^-4	0.946	INTERGENIC
2R	9927519	2R_9927519_SNP [dm3] 2R_14040014_SNP [dm6]	G	A	2.107e^-4	0.946	SYNONYMOUS_CODING mam INTRON mam	TF binding site mE1_TFBS_chinmo
2R	17302588	2R_17302588_SNP [dm3] 2R_21415083_SNP [dm6]	G	T	2.109e^-4	0.946	INTRON Sdc	TF binding site mE1_TFBS_inv
3L	10438824	3L_10438824_SNP [dm3] 3L_10445724_SNP [dm6]	A	G	2.113e^-4	0.946	INTERGENIC
3L	16663124	3L_16663124_SNP [dm3] 3L_16670024_SNP [dm6]	T	C	2.116e^-4	0.946	DOWNSTREAM CR45241 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6667927	3R_6667927_SNP [dm3] 3R_10842205_SNP [dm6]	G	A	2.119e^-4	0.946	INTRON Cad86C	TF binding site mE1_TFBS_cad
2L	9598299	2L_9598299_SNP [dm3] 2L_9598299_SNP [dm6]	G	A	2.134e^-4	0.946	DOWNSTREAM CG4382 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	17345933	X_17345933_SNP [dm3] X_17451900_SNP [dm6]	T	C	2.143e^-4	0.946	INTRON CG8568
X	17345945	X_17345945_DEL [dm3] X_17451912_DEL [dm6]	TAA	G	2.143e^-4	0.946	INTRON CG8568
X	17345986	X_17345986_SNP [dm3] X_17451953_SNP [dm6]	C	A	2.143e^-4	0.946	INTRON CG8568
2L	2612461	2L_2612461_SNP [dm3] 2L_2612461_SNP [dm6]	G	A	2.146e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3031716	3L_3031716_SNP [dm3] 3L_3031716_SNP [dm6]	C	T	2.149e^-4	0.946	INTERGENIC
3R	14237782	3R_14237782_INS [dm3] 3R_18412060_INS [dm6]	G	GCGAA	2.152e^-4	0.946	UPSTREAM CG10864 INTRON CG31122	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2R	18358299	2R_18358299_SNP [dm3] 2R_22470794_SNP [dm6]	T	C	2.162e^-4	0.946	SYNONYMOUS_CODING CG10384	TF binding site mE1_TFBS_chinmo
2L	3380139	2L_3380139_SNP [dm3] 2L_3380139_SNP [dm6]	C	A	2.162e^-4	0.946	INTERGENIC
2L	3380166	2L_3380166_SNP [dm3] 2L_3380166_SNP [dm6]	G	T	2.162e^-4	0.946	INTERGENIC
3L	14997647	3L_14997647_DEL [dm3] 3L_15004547_DEL [dm6]	AAATAC	G	2.163e^-4	0.946	INTRON Reck
3L	11390198	3L_11390198_SNP [dm3] 3L_11397098_SNP [dm6]	T	C	2.163e^-4	0.946	UPSTREAM CG44362 INTERGENIC
2L	8373034	2L_8373034_SNP [dm3] 2L_8373034_SNP [dm6]	C	G	2.164e^-4	0.946	SYNONYMOUS_CODING CG17292	TF binding site mE1_TFBS_HSA
2R	6726486	2R_6726486_SNP [dm3] 2R_10838981_SNP [dm6]	A	G	2.171e^-4	0.946	UPSTREAM CG7686 DOWNSTREAM CG30015 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9647162	3L_9647162_SNP [dm3] 3L_9654062_SNP [dm6]	A	G	2.180e^-4	0.946	INTRON fry & 1 other
3L	16080150	3L_16080150_SNP [dm3] 3L_16087050_SNP [dm6]	G	T	2.213e^-4	0.946	SYNONYMOUS_CODING Taspase1 DOWNSTREAM CG5235	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16658880	3L_16658880_SNP [dm3] 3L_16665780_SNP [dm6]	A	T	2.221e^-4	0.946	INTRON Galphaf
2L	18510927	2L_18510927_SNP [dm3] 2L_18510927_SNP [dm6]	T	C	2.231e^-4	0.946	INTRON CG10178
3L	18273329	3L_18273329_SNP [dm3] 3L_18280229_SNP [dm6]	T	A	2.231e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_Ubx
X	15794712	X_15794712_SNP [dm3] X_15900679_SNP [dm6]	A	G	2.237e^-4	0.946	INTRON shi
3R	26921476	3R_26921476_SNP [dm3] 3R_31095754_SNP [dm6]	C	A	2.242e^-4	0.946	INTRON CG11317
3R	22553271	3R_22553271_SNP [dm3] 3R_26727549_SNP [dm6]	C	G	2.246e^-4	0.946	UTR_5_PRIME CG14246 UPSTREAM CG14246 DOWNSTREAM CG14244 INTRON CG14246
2L	4161319	2L_4161319_SNP [dm3] 2L_4161319_SNP [dm6]	A	T	2.251e^-4	0.946	INTERGENIC
3R	14287655	3R_14287655_INS [dm3] 3R_18461933_INS [dm6]	A	ATATAG	2.260e^-4	0.946	INTRON fru
3L	5444814	3L_5444814_SNP [dm3] 3L_5451714_SNP [dm6]	C	T	2.261e^-4	0.946	INTERGENIC
2L	4807215	2L_4807215_SNP [dm3] 2L_4807215_SNP [dm6]	G	A	2.272e^-4	0.946	INTERGENIC
3L	5464453	3L_5464453_SNP [dm3] 3L_5471353_SNP [dm6]	C	T	2.274e^-4	0.946	INTERGENIC
3L	5464456	3L_5464456_SNP [dm3] 3L_5471356_SNP [dm6]	C	T	2.274e^-4	0.946	INTERGENIC
3L	5797642	3L_5797642_SNP [dm3] 3L_5804542_SNP [dm6]	A	C	2.278e^-4	0.946	SYNONYMOUS_CODING CG42272 INTRON S6k	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	14287672	3R_14287672_SNP [dm3] 3R_18461950_SNP [dm6]	C	T	2.279e^-4	0.946	INTRON fru
3R	14287685	3R_14287685_SNP [dm3] 3R_18461963_SNP [dm6]	G	C	2.279e^-4	0.946	INTRON fru
2R	14586562	2R_14586562_SNP [dm3] 2R_18699057_SNP [dm6]	G	T	2.280e^-4	0.946	INTRON Sik3
3R	26133797	3R_26133797_SNP [dm3] 3R_30308075_SNP [dm6]	C	T	2.281e^-4	0.946	INTRON hdc
3L	7200792	3L_7200792_SNP [dm3] 3L_7207692_SNP [dm6]	A	G	2.284e^-4	0.946	INTERGENIC
3R	1756913	3R_1756913_SNP [dm3] 3R_5931191_SNP [dm6]	T	A	2.296e^-4	0.946	INTRON CG34113
2R	8720987	2R_8720987_SNP [dm3] 2R_12833482_SNP [dm6]	A	T	2.299e^-4	0.946	INTERGENIC
2R	18889511	2R_18889511_SNP [dm3] 2R_23001988_SNP [dm6]	A	T	2.307e^-4	0.946	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	10166263	3R_10166263_SNP [dm3] 3R_14340541_SNP [dm6]	T	A	2.309e^-4	0.946	INTRON NK7.1
2L	8372827	2L_8372827_SNP [dm3] 2L_8372827_SNP [dm6]	A	G	2.324e^-4	0.946	INTRON CG17292	TF binding site mE1_TFBS_HSA
3L	16663156	3L_16663156_SNP [dm3] 3L_16670056_SNP [dm6]	A	T	2.325e^-4	0.946	DOWNSTREAM CR45241 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2536875	3L_2536875_SNP [dm3] 3L_2536875_SNP [dm6]	G	A	2.325e^-4	0.946	UPSTREAM Spn INTRON Spn	TF binding site mE1_TFBS_Trl
3R	25286050	3R_25286050_SNP [dm3] 3R_29460328_SNP [dm6]	C	T	2.338e^-4	0.946	INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1791822	2L_1791822_SNP [dm3] 2L_1791822_SNP [dm6]	A	G	2.338e^-4	0.946	START_LOST Gr22c DOWNSTREAM Gr22b
2L	4090811	2L_4090811_SNP [dm3] 2L_4090811_SNP [dm6]	C	T	2.339e^-4	0.946	INTRON ed
3R	12906331	3R_12906331_DEL [dm3] 3R_17080609_DEL [dm6]	TT	T	2.355e^-4	0.946	UPSTREAM Keap1 INTRON kuk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2240193	3R_2240193_SNP [dm3] 3R_6414471_SNP [dm6]	A	T	2.362e^-4	0.946	INTRON gpp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	669799	X_669799_SNP [dm3] X_775766_SNP [dm6]	A	G	2.367e^-4	0.946	INTRON fz3
X	19924318	X_19924318_SNP [dm3] X_20030285_SNP [dm6]	A	G	2.377e^-4	0.946	INTRON Dop2R	TF binding site mE1_TFBS_chinmo
2L	18510730	2L_18510730_SNP [dm3] 2L_18510730_SNP [dm6]	G	T	2.383e^-4	0.946	INTRON CG10178
3L	14420578	3L_14420578_SNP [dm3] 3L_14427478_SNP [dm6]	G	A	2.384e^-4	0.946	UPSTREAM bbg INTRON bbg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16080549	3L_16080549_SNP [dm3] 3L_16087449_SNP [dm6]	T	C	2.388e^-4	0.946	UTR_5_PRIME Taspase1 DOWNSTREAM CG5235	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4443420	2R_4443420_SNP [dm3] 2R_8555915_SNP [dm6]	G	A	2.394e^-4	0.946	INTERGENIC
X	8375339	X_8375339_SNP [dm3] X_8481306_SNP [dm6]	A	C	2.399e^-4	0.946	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	13760893	X_13760893_SNP [dm3] X_13866860_SNP [dm6]	T	C	2.410e^-4	0.946	UTR_3_PRIME mamo INTRON mamo
2R	16040875	2R_16040875_DEL [dm3] 2R_20153370_DEL [dm6]	AAGTATTTGGCCTA...	A	2.416e^-4	0.946	INTERGENIC
3R	12998991	3R_12998991_SNP [dm3] 3R_17173269_SNP [dm6]	T	C	2.418e^-4	0.946	INTRON Mur89F
2L	14082661	2L_14082661_SNP [dm3] 2L_14082661_SNP [dm6]	C	G	2.432e^-4	0.946	INTRON nAChRalpha5	TF binding site mE1_TFBS_zfh1
3L	8603033	3L_8603033_SNP [dm3] 3L_8609933_SNP [dm6]	A	T	2.435e^-4	0.946	START_GAINED CG6282 UTR_5_PRIME CG6282	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18358287	2R_18358287_SNP [dm3] 2R_22470782_SNP [dm6]	T	C	2.439e^-4	0.946	SYNONYMOUS_CODING CG10384	TF binding site mE1_TFBS_chinmo
X	2566221	X_2566221_SNP [dm3] X_2672188_SNP [dm6]	C	T	2.451e^-4	0.946	INTRON sgg
X	20847848	X_20847848_SNP [dm3] X_20976821_SNP [dm6]	T	C	2.463e^-4	0.946	INTERGENIC
3R	25455220	3R_25455220_SNP [dm3] 3R_29629498_SNP [dm6]	T	C	2.463e^-4	0.946	DOWNSTREAM Dop1R2 INTERGENIC
3R	19907924	3R_19907924_SNP [dm3] 3R_24082202_SNP [dm6]	T	A	2.475e^-4	0.946	INTRON 4EHP
2L	7802739	2L_7802739_SNP [dm3] 2L_7802739_SNP [dm6]	G	A	2.480e^-4	0.946	SYNONYMOUS_CODING cdc14 UTR_3_PRIME cdc14 DOWNSTREAM r2d2	TF binding site mE1_TFBS_cad
3R	12015564	3R_12015564_SNP [dm3] 3R_16189842_SNP [dm6]	T	A	2.491e^-4	0.946	INTRON sra
3L	3580207	3L_3580207_SNP [dm3] 3L_3580207_SNP [dm6]	A	G	2.492e^-4	0.946	INTRON Eip63E
2R	11440754	2R_11440754_SNP [dm3] 2R_15553249_SNP [dm6]	C	G	2.498e^-4	0.946	INTERGENIC
2L	10533552	2L_10533552_SNP [dm3] 2L_10533552_SNP [dm6]	A	C	2.499e^-4	0.946	SYNONYMOUS_CODING CG18301 UPSTREAM CG18302
3L	18824147	3L_18824147_SNP [dm3] 3L_18831047_SNP [dm6]	A	C	2.506e^-4	0.946	INTRON Indy	TF binding site mE1_TFBS_cad
2L	8732750	2L_8732750_SNP [dm3] 2L_8732750_SNP [dm6]	T	C	2.515e^-4	0.946	INTRON raw
3R	10625702	3R_10625702_SNP [dm3] 3R_14799980_SNP [dm6]	A	C	2.524e^-4	0.946	SYNONYMOUS_CODING CG14856
X	10040682	X_10040682_SNP [dm3] X_10146649_SNP [dm6]	T	A	2.534e^-4	0.946	SYNONYMOUS_CODING RhoU INTRON CR44894
2R	7570234	2R_7570234_SNP [dm3] 2R_11682729_SNP [dm6]	T	C	2.537e^-4	0.946	INTRON Buffy
3L	5444829	3L_5444829_SNP [dm3] 3L_5451729_SNP [dm6]	T	C	2.546e^-4	0.946	INTERGENIC
3R	12922929	3R_12922929_SNP [dm3] 3R_17097207_SNP [dm6]	G	A	2.547e^-4	0.946	INTRON cher
2L	6318370	2L_6318370_SNP [dm3] 2L_6318370_SNP [dm6]	A	C	2.559e^-4	0.946	INTRON Ddr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16366183	X_16366183_SNP [dm3] X_16472150_SNP [dm6]	T	C	2.559e^-4	0.946	INTRON para	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14043939	3R_14043939_SNP [dm3] 3R_18218217_SNP [dm6]	T	G	2.576e^-4	0.946	UTR_3_PRIME CG7183 DOWNSTREAM CG14314
3R	14043942	3R_14043942_SNP [dm3] 3R_18218220_SNP [dm6]	G	C	2.576e^-4	0.946	UTR_3_PRIME CG7183 DOWNSTREAM CG14314
3R	14043944	3R_14043944_SNP [dm3] 3R_18218222_SNP [dm6]	T	A	2.576e^-4	0.946	UTR_3_PRIME CG7183 DOWNSTREAM CG14314
3R	14043962	3R_14043962_SNP [dm3] 3R_18218240_SNP [dm6]	C	T	2.576e^-4	0.946	UTR_3_PRIME CG7183 DOWNSTREAM CG14314
2R	10328093	2R_10328093_SNP [dm3] 2R_14440588_SNP [dm6]	G	T	2.587e^-4	0.946	INTRON Oaz
2R	13336047	2R_13336047_SNP [dm3] 2R_17448542_SNP [dm6]	T	A	2.595e^-4	0.946	UTR_3_PRIME mthl3
X	8523452	X_8523452_SNP [dm3] X_8629419_SNP [dm6]	T	G	2.597e^-4	0.946	DOWNSTREAM oc INTERGENIC	TF binding site mE1_TFBS_cad
2R	1605928	2R_1605928_SNP [dm3] 2R_5718423_SNP [dm6]	T	C	2.608e^-4	0.946	INTRON ap
2L	4161337	2L_4161337_SNP [dm3] 2L_4161337_SNP [dm6]	C	T	2.613e^-4	0.946	INTERGENIC
2L	4161348	2L_4161348_SNP [dm3] 2L_4161348_SNP [dm6]	C	A	2.613e^-4	0.946	INTERGENIC
2L	13327727	2L_13327727_SNP [dm3] 2L_13327727_SNP [dm6]	C	T	2.620e^-4	0.946	INTRON CG43778
X	15563687	X_15563687_SNP [dm3] X_15669654_SNP [dm6]	C	T	2.623e^-4	0.946	UTR_5_PRIME CG15646 INTRON CG15646	TF binding site BDTNP1_TFBS_dl
3R	12896178	3R_12896178_SNP [dm3] 3R_17070456_SNP [dm6]	G	A	2.626e^-4	0.946	DOWNSTREAM Ns1 & 1 other INTERGENIC
3R	11536893	3R_11536893_SNP [dm3] 3R_15711171_SNP [dm6]	T	C	2.649e^-4	0.946	INTERGENIC
X	5582571	X_5582571_SNP [dm3] X_5688538_SNP [dm6]	C	G	2.655e^-4	0.946	SYNONYMOUS_CODING CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	17346176	X_17346176_SNP [dm3] X_17452143_SNP [dm6]	C	G	2.665e^-4	0.946	SYNONYMOUS_CODING CG8568
2L	6010487	2L_6010487_SNP [dm3] 2L_6010487_SNP [dm6]	G	A	2.672e^-4	0.946	SYNONYMOUS_CODING CG9098	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	18984217	2L_18984217_SNP [dm3] 2L_18984217_SNP [dm6]	G	A	2.680e^-4	0.946	INTRON Swip-1
2R	13217816	2R_13217816_SNP [dm3] 2R_17330311_SNP [dm6]	G	A	2.682e^-4	0.946	INTRON mbl
2R	16655848	2R_16655848_SNP [dm3] 2R_20768343_SNP [dm6]	C	G	2.690e^-4	0.946	DOWNSTREAM CR44665 INTERGENIC
3R	10314647	3R_10314647_SNP [dm3] 3R_14488925_SNP [dm6]	T	G	2.708e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	16953161	2L_16953161_SNP [dm3] 2L_16953161_SNP [dm6]	C	T	2.717e^-4	0.946	INTERGENIC
3R	14239453	3R_14239453_SNP [dm3] 3R_18413731_SNP [dm6]	T	G	2.721e^-4	0.946	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8098931	2L_8098931_SNP [dm3] 2L_8098931_SNP [dm6]	T	A	2.732e^-4	0.946	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	10447321	3L_10447321_SNP [dm3] 3L_10454221_SNP [dm6]	C	T	2.735e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10447866	3L_10447866_SNP [dm3] 3L_10454766_SNP [dm6]	C	T	2.735e^-4	0.946	INTERGENIC
2R	18889500	2R_18889500_SNP [dm3] 2R_23001977_SNP [dm6]	T	C	2.736e^-4	0.946	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	1749652	3R_1749652_INS [dm3] 3R_5923930_INS [dm6]	A	AT	2.736e^-4	0.946	INTRON CG34113	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13967771	2L_13967771_SNP [dm3] 2L_13967771_SNP [dm6]	G	T	2.745e^-4	0.946	SYNONYMOUS_CODING NimB3 UPSTREAM NimB2 DOWNSTREAM NimB4
X	4444006	X_4444006_SNP [dm3] X_4549973_SNP [dm6]	G	C	2.748e^-4	0.946	UTR_3_PRIME CG11436 DOWNSTREAM CG15912 INTRON CR32773
3L	3076368	3L_3076368_SNP [dm3] 3L_3076368_SNP [dm6]	A	G	2.751e^-4	0.946	INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10256294	2R_10256294_SNP [dm3] 2R_14368789_SNP [dm6]	C	T	2.754e^-4	0.946	SYNONYMOUS_CODING CG34443 UPSTREAM CG34444 DOWNSTREAM CG34442
3L	11743909	3L_11743909_SNP [dm3] 3L_11750809_SNP [dm6]	A	T	2.754e^-4	0.946	UPSTREAM Gr68a INTRON CG6024
3L	14999125	3L_14999125_SNP [dm3] 3L_15006025_SNP [dm6]	T	C	2.762e^-4	0.946	INTRON Reck
3R	14239200	3R_14239200_SNP [dm3] 3R_18413478_SNP [dm6]	A	G	2.768e^-4	0.946	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	13884423	2R_13884423_SNP [dm3] 2R_17996918_SNP [dm6]	A	C	2.775e^-4	0.946	INTRON dpr13
2R	18701520	2R_18701520_SNP [dm3] 2R_22814015_SNP [dm6]	A	C	2.789e^-4	0.946	SYNONYMOUS_CODING stl	TF binding site mE1_TFBS_chinmo
2R	17145565	2R_17145565_SNP [dm3] 2R_21258060_SNP [dm6]	G	A	2.809e^-4	0.946	INTRON Rgk3
3L	10809418	3L_10809418_INS [dm3] 3L_10816318_INS [dm6]	T	TT	2.810e^-4	0.946	UPSTREAM CR45247 DOWNSTREAM CG42831 INTERGENIC
3R	15051578	3R_15051578_SNP [dm3] 3R_19225856_SNP [dm6]	A	G	2.811e^-4	0.946	INTRON vib	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	12203234	3R_12203234_SNP [dm3] 3R_16377512_SNP [dm6]	G	A	2.813e^-4	0.946	SYNONYMOUS_CODING ss	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8433919	2L_8433919_DEL [dm3] 2L_8433919_DEL [dm6]	AGCGATTAT	A	2.817e^-4	0.946	UPSTREAM grk DOWNSTREAM D12 INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8471345	X_8471345_SNP [dm3] X_8577312_SNP [dm6]	C	T	2.817e^-4	0.946	INTRON CG12065
X	8471356	X_8471356_SNP [dm3] X_8577323_SNP [dm6]	A	T	2.817e^-4	0.946	INTRON CG12065
3R	12897108	3R_12897108_SNP [dm3] 3R_17071386_SNP [dm6]	A	G	2.818e^-4	0.946	SYNONYMOUS_CODING Ns1 DOWNSTREAM Dad
3R	22553145	3R_22553145_SNP [dm3] 3R_26727423_SNP [dm6]	G	A	2.819e^-4	0.946	UPSTREAM CG14246 DOWNSTREAM CG14244 INTRON CG14246
3L	11353261	3L_11353261_SNP [dm3] 3L_11360161_SNP [dm6]	T	C	2.841e^-4	0.946	INTERGENIC
3R	26631278	3R_26631278_SNP [dm3] 3R_30805556_SNP [dm6]	C	T	2.841e^-4	0.946	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	16227048	X_16227048_SNP [dm3] X_16333015_SNP [dm6]	A	C	2.862e^-4	0.946	UPSTREAM CG9921 & 1 other INTRON CG9921	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2R	6697104	2R_6697104_SNP [dm3] 2R_10809599_SNP [dm6]	T	A	2.869e^-4	0.946	UTR_5_PRIME CG12935 UPSTREAM CG12935 & 1 other DOWNSTREAM CG7637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	3996610	X_3996610_SNP [dm3] X_4102577_SNP [dm6]	A	G	2.873e^-4	0.946	UTR_3_PRIME CG15375 DOWNSTREAM Xpac	TF binding site mE1_TFBS_HSA
3L	11854337	3L_11854337_SNP [dm3] 3L_11861237_SNP [dm6]	G	A	2.878e^-4	0.946	INTRON CG44837
2L	8574676	2L_8574676_DEL [dm3] 2L_8574676_DEL [dm6]	GTGCGGTA	G	2.880e^-4	0.946	INTRON Sema-1a
2L	8574684	2L_8574684_INS [dm3] 2L_8574684_INS [dm6]	G	GCT	2.880e^-4	0.946	INTRON Sema-1a
3R	1752097	3R_1752097_SNP [dm3] 3R_5926375_SNP [dm6]	T	C	2.892e^-4	0.946	INTRON CG34113
3L	4278573	3L_4278573_SNP [dm3] 3L_4278573_SNP [dm6]	G	C	2.892e^-4	0.946	DOWNSTREAM CG1273 INTRON CG1311	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20686725	2R_20686725_SNP [dm3] 2R_24799202_SNP [dm6]	C	T	2.894e^-4	0.946	SYNONYMOUS_CODING CG3611 DOWNSTREAM CG12849	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25286149	3R_25286149_SNP [dm3] 3R_29460427_SNP [dm6]	T	G	2.897e^-4	0.946	INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1182859	3L_1182859_SNP [dm3] 3L_1182859_SNP [dm6]	A	C	2.906e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	16433509	3R_16433509_SNP [dm3] 3R_20607787_SNP [dm6]	A	G	2.908e^-4	0.946	INTRON bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7342766	3L_7342766_SNP [dm3] 3L_7349666_SNP [dm6]	G	A	2.920e^-4	0.946	INTRON qm
2L	20440120	2L_20440120_SNP [dm3] 2L_20440120_SNP [dm6]	T	C	2.929e^-4	0.946	INTRON CG31688	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7442907	2R_7442907_SNP [dm3] 2R_11555402_SNP [dm6]	T	C	2.936e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25984952	3R_25984952_SNP [dm3] 3R_30159230_SNP [dm6]	T	C	2.938e^-4	0.946	INTRON CG11498
2L	16953065	2L_16953065_SNP [dm3] 2L_16953065_SNP [dm6]	A	G	2.944e^-4	0.946	INTERGENIC
3R	12876531	3R_12876531_SNP [dm3] 3R_17050809_SNP [dm6]	T	A	2.949e^-4	0.946	INTERGENIC
3L	5417071	3L_5417071_SNP [dm3] 3L_5423971_SNP [dm6]	A	G	2.950e^-4	0.946	UPSTREAM CG34391 INTERGENIC
2L	8360566	2L_8360566_SNP [dm3] 2L_8360566_SNP [dm6]	C	T	2.953e^-4	0.946	INTRON CG7627	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2743279	3L_2743279_SNP [dm3] 3L_2743279_SNP [dm6]	A	G	2.958e^-4	0.946	INTRON Mrtf
X	20310196	X_20310196_SNP [dm3] X_20439169_SNP [dm6]	G	T	2.968e^-4	0.946	INTRON CG1695	TF binding site mE1_TFBS_chinmo
2L	1712706	2L_1712706_SNP [dm3] 2L_1712706_SNP [dm6]	C	A	2.972e^-4	0.946	SYNONYMOUS_CODING frtz	TF binding site mE1_TFBS_chinmo
2L	4338426	2L_4338426_SNP [dm3] 2L_4338426_SNP [dm6]	A	C	2.973e^-4	0.946	UPSTREAM Atet INTRON Atet
2R	8876279	2R_8876279_SNP [dm3] 2R_12988774_SNP [dm6]	A	C	2.976e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12173725	3L_12173725_SNP [dm3] 3L_12180625_SNP [dm6]	C	T	2.979e^-4	0.946	INTRON CAH2
3L	10786886	3L_10786886_SNP [dm3] 3L_10793786_SNP [dm6]	T	G	2.994e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	26628355	3R_26628355_SNP [dm3] 3R_30802633_SNP [dm6]	C	A	3.000e^-4	0.946	INTRON wts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	20080559	2R_20080559_SNP [dm3] 2R_24193036_SNP [dm6]	G	A	3.005e^-4	0.946	SYNONYMOUS_CODING ocm
3L	18824273	3L_18824273_SNP [dm3] 3L_18831173_SNP [dm6]	G	A	3.025e^-4	0.946	SYNONYMOUS_CODING Indy	TF binding site mE1_TFBS_cad
3R	25286172	3R_25286172_SNP [dm3] 3R_29460450_SNP [dm6]	C	T	3.026e^-4	0.946	INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14044844	2L_14044844_SNP [dm3] 2L_14044844_SNP [dm6]	C	T	3.040e^-4	0.946	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	16153148	2R_16153148_SNP [dm3] 2R_20265643_SNP [dm6]	A	T	3.041e^-4	0.946	NON_SYNONYMOUS_CODING CG8908 UPSTREAM CR43812 DOWNSTREAM RpS18
2L	8422096	2L_8422096_SNP [dm3] 2L_8422096_SNP [dm6]	G	C	3.042e^-4	0.946	INTRON Akap200	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2739604	3L_2739604_SNP [dm3] 3L_2739604_SNP [dm6]	G	C	3.042e^-4	0.946	UPSTREAM Acp62F INTRON Mrtf
2L	11295797	2L_11295797_SNP [dm3] 2L_11295797_SNP [dm6]	T	A	3.045e^-4	0.946	INTERGENIC
3L	2405680	3L_2405680_SNP [dm3] 3L_2405680_SNP [dm6]	C	T	3.051e^-4	0.946	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18221553	2R_18221553_SNP [dm3] 2R_22334048_SNP [dm6]	T	G	3.063e^-4	0.946	UTR_3_PRIME Liprin-gamma DOWNSTREAM CG34208
2R	17724377	2R_17724377_SNP [dm3] 2R_21836872_SNP [dm6]	T	G	3.070e^-4	0.946	UPSTREAM CG4377 DOWNSTREAM CG4372 INTERGENIC
2R	20043128	2R_20043128_SNP [dm3] 2R_24155605_SNP [dm6]	A	G	3.076e^-4	0.946	INTRON Dat
2R	20043139	2R_20043139_SNP [dm3] 2R_24155616_SNP [dm6]	T	A	3.076e^-4	0.946	INTRON Dat
X	3528653	X_3528653_SNP [dm3] X_3634620_SNP [dm6]	A	G	3.081e^-4	0.946	INTRON AstA-R1
3L	10712258	3L_10712258_SNP [dm3] 3L_10719158_SNP [dm6]	T	C	3.086e^-4	0.946	INTERGENIC
3R	18160694	3R_18160694_SNP [dm3] 3R_22334972_SNP [dm6]	A	C	3.090e^-4	0.946	UPSTREAM CG5391 INTRON CG5388
X	4372632	X_4372632_SNP [dm3] X_4478599_SNP [dm6]	A	C	3.091e^-4	0.946	INTRON CR32773 & 1 other
2R	13394031	2R_13394031_SNP [dm3] 2R_17506526_SNP [dm6]	A	G	3.095e^-4	0.946	UTR_3_PRIME CG43164 INTRON CG43164
3L	7392890	3L_7392890_SNP [dm3] 3L_7399790_SNP [dm6]	C	T	3.102e^-4	0.946	UTR_3_PRIME CG8562 UPSTREAM CG18417
X	13820309	X_13820309_SNP [dm3] X_13926276_SNP [dm6]	T	G	3.103e^-4	0.946	INTRON mamo	TF binding site mE1_TFBS_kn
2L	4161338	2L_4161338_INS [dm3] 2L_4161338_INS [dm6]	T	TGTTT	3.109e^-4	0.946	INTERGENIC
2R	8870973	2R_8870973_SNP [dm3] 2R_12983468_SNP [dm6]	T	C	3.116e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12876440	3R_12876440_SNP [dm3] 3R_17050718_SNP [dm6]	A	G	3.116e^-4	0.946	INTERGENIC
3L	5861513	3L_5861513_SNP [dm3] 3L_5868413_SNP [dm6]	T	A	3.117e^-4	0.946	INTERGENIC
3R	25069051	3R_25069051_SNP [dm3] 3R_29243329_SNP [dm6]	G	T	3.126e^-4	0.946	INTRON CG31445
2R	6372110	2R_6372110_SNP [dm3] 2R_10484605_SNP [dm6]	G	T	3.126e^-4	0.946	UTR_5_PRIME pre-lola-G INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	18450177	3R_18450177_SNP [dm3] 3R_22624455_SNP [dm6]	T	G	3.132e^-4	0.946	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	4400181	3L_4400181_SNP [dm3] 3L_4400181_SNP [dm6]	A	G	3.137e^-4	0.946	INTRON slow	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	20129123	X_20129123_INS [dm3] X_20258097_INS [dm6]	T	TT	3.142e^-4	0.946	UPSTREAM CG17065 INTERGENIC
3R	25460750	3R_25460750_SNP [dm3] 3R_29635028_SNP [dm6]	G	T	3.159e^-4	0.946	INTRON Dop1R2
3L	12288766	3L_12288766_SNP [dm3] 3L_12295666_SNP [dm6]	A	C	3.166e^-4	0.946	INTRON CG4328
2L	17796996	2L_17796996_SNP [dm3] 2L_17796996_SNP [dm6]	T	G	3.171e^-4	0.946	INTRON CadN2
3R	12922333	3R_12922333_SNP [dm3] 3R_17096611_SNP [dm6]	C	T	3.175e^-4	0.946	INTRON cher
3R	26699628	3R_26699628_INS [dm3] 3R_30873906_INS [dm6]	C	CGCAGCC	3.178e^-4	0.946	DOWNSTREAM CG15546 INTERGENIC
2R	12068583	2R_12068583_SNP [dm3] 2R_16181078_SNP [dm6]	T	A	3.184e^-4	0.946	UPSTREAM Lis-1 INTRON Lis-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12724112	2L_12724112_SNP [dm3] 2L_12724112_SNP [dm6]	T	C	3.190e^-4	0.946	INTRON MRP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	12724133	2L_12724133_SNP [dm3] 2L_12724133_SNP [dm6]	T	C	3.190e^-4	0.946	INTRON MRP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	14082673	2L_14082673_SNP [dm3] 2L_14082673_SNP [dm6]	G	T	3.198e^-4	0.946	INTRON nAChRalpha5	TF binding site mE1_TFBS_zfh1
3L	12479877	3L_12479877_SNP [dm3] 3L_12486777_SNP [dm6]	G	T	3.199e^-4	0.946	UTR_3_PRIME CG10660 DOWNSTREAM CG33725	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17931785	2R_17931785_SNP [dm3] 2R_22044280_SNP [dm6]	T	C	3.202e^-4	0.946	INTERGENIC
2R	17772105	2R_17772105_SNP [dm3] 2R_21884600_SNP [dm6]	C	T	3.207e^-4	0.946	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12133051	2R_12133051_SNP [dm3] 2R_16245546_SNP [dm6]	C	T	3.214e^-4	0.946	INTRON CngA
2L	7380345	2L_7380345_SNP [dm3] 2L_7380345_SNP [dm6]	T	C	3.220e^-4	0.946	SYNONYMOUS_CODING ninaC
3R	14234874	3R_14234874_SNP [dm3] 3R_18409152_SNP [dm6]	A	G	3.229e^-4	0.946	SYNONYMOUS_CODING CG31122 DOWNSTREAM CG10864
3L	12173757	3L_12173757_SNP [dm3] 3L_12180657_SNP [dm6]	A	C	3.234e^-4	0.946	INTRON CAH2
3L	12173758	3L_12173758_SNP [dm3] 3L_12180658_SNP [dm6]	C	T	3.234e^-4	0.946	INTRON CAH2
3L	12173772	3L_12173772_SNP [dm3] 3L_12180672_SNP [dm6]	G	A	3.234e^-4	0.946	INTRON CAH2
3L	9732932	3L_9732932_SNP [dm3] 3L_9739832_SNP [dm6]	C	T	3.236e^-4	0.946	UPSTREAM CG42268 INTRON CG42268	TF binding site mE1_TFBS_cad
3R	18215850	3R_18215850_SNP [dm3] 3R_22390128_SNP [dm6]	C	G	3.238e^-4	0.946	UTR_5_PRIME CG7059 UPSTREAM CG5379 & 1 other INTRON CG7059	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19138914	2R_19138914_SNP [dm3] 2R_23251391_SNP [dm6]	C	G	3.244e^-4	0.946	INTERGENIC
2L	11932083	2L_11932083_DEL [dm3] 2L_11932083_DEL [dm6]	AT	A	3.269e^-4	0.946	INTERGENIC
2R	18889462	2R_18889462_DEL [dm3] 2R_23001939_DEL [dm6]	AAC	TT	3.271e^-4	0.946	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	20334426	2L_20334426_SNP [dm3] 2L_20334426_SNP [dm6]	G	T	3.273e^-4	0.946	INTRON spir
3R	25990697	3R_25990697_INS [dm3] 3R_30164975_INS [dm6]	T	TT	3.281e^-4	0.946	UTR_3_PRIME CG31030	TF binding site mE1_TFBS_cad
2L	16042709	2L_16042709_SNP [dm3] 2L_16042709_SNP [dm6]	G	A	3.294e^-4	0.946	UPSTREAM BicC & 1 other INTRON BicC & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17240024	X_17240024_SNP [dm3] X_17345991_SNP [dm6]	G	A	3.297e^-4	0.946	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	17936441	2L_17936441_SNP [dm3] 2L_17936441_SNP [dm6]	G	A	3.298e^-4	0.946	INTERGENIC
3R	18450175	3R_18450175_SNP [dm3] 3R_22624453_SNP [dm6]	T	G	3.302e^-4	0.946	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	20837199	X_20837199_SNP [dm3] X_20966172_SNP [dm6]	A	T	3.308e^-4	0.946	UPSTREAM CG1304 INTERGENIC
3R	12206657	3R_12206657_SNP [dm3] 3R_16380935_SNP [dm6]	A	C	3.311e^-4	0.946	INTRON ss
3L	5464449	3L_5464449_SNP [dm3] 3L_5471349_SNP [dm6]	A	G	3.319e^-4	0.946	INTERGENIC
2R	7060604	2R_7060604_SNP [dm3] 2R_11173099_SNP [dm6]	G	T	3.330e^-4	0.946	UPSTREAM CG13229 & 1 other INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	16078538	3L_16078538_DEL [dm3] 3L_16085438_DEL [dm6]	GTG	G	3.347e^-4	0.946	UTR_3_PRIME Taspase1 DOWNSTREAM Taspase1 & 1 other
2L	8350528	2L_8350528_SNP [dm3] 2L_8350528_SNP [dm6]	G	A	3.348e^-4	0.946	UTR_3_PRIME CG7778 DOWNSTREAM CG7778	TF binding site mE1_TFBS_zfh1
2R	18221399	2R_18221399_SNP [dm3] 2R_22333894_SNP [dm6]	A	C	3.351e^-4	0.946	UTR_3_PRIME Liprin-gamma DOWNSTREAM CG34208
2L	18486966	2L_18486966_SNP [dm3] 2L_18486966_SNP [dm6]	T	C	3.374e^-4	0.946	DOWNSTREAM kon INTRON CG10176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9582347	3L_9582347_SNP [dm3] 3L_9589247_SNP [dm6]	A	C	3.376e^-4	0.946	INTRON CG42673
3L	3643966	3L_3643966_SNP [dm3] 3L_3643966_SNP [dm6]	A	C	3.377e^-4	0.946	INTRON dar1	TF binding site mE1_TFBS_cad
2L	12797216	2L_12797216_SNP [dm3] 2L_12797216_SNP [dm6]	A	T	3.387e^-4	0.946	INTERGENIC
3L	4270787	3L_4270787_SNP [dm3] 3L_4270787_SNP [dm6]	T	C	3.388e^-4	0.946	INTRON CG1273	TF binding site mE1_TFBS_cad
3L	10712195	3L_10712195_SNP [dm3] 3L_10719095_SNP [dm6]	C	A	3.389e^-4	0.946	INTERGENIC
3R	14287616	3R_14287616_SNP [dm3] 3R_18461894_SNP [dm6]	T	A	3.389e^-4	0.946	INTRON fru
3R	14849375	3R_14849375_SNP [dm3] 3R_19023653_SNP [dm6]	C	G	3.394e^-4	0.946	UPSTREAM CG14286 INTRON CG6005	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21725536	2L_21725536_SNP [dm3] 2L_21725536_SNP [dm6]	A	G	3.398e^-4	0.946	INTRON CG31619	transposable element FlyBase
X	16159602	X_16159602_SNP [dm3] X_16265569_SNP [dm6]	G	A	3.405e^-4	0.946	SYNONYMOUS_CODING CG12507
X	20837142	X_20837142_SNP [dm3] X_20966115_SNP [dm6]	T	A	3.413e^-4	0.946	UPSTREAM CG1304 INTERGENIC
2R	18611683	2R_18611683_SNP [dm3] 2R_22724178_SNP [dm6]	A	G	3.427e^-4	0.946	INTRON jbug	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	11409349	3R_11409349_SNP [dm3] 3R_15583627_SNP [dm6]	A	T	3.431e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25986418	3R_25986418_SNP [dm3] 3R_30160696_SNP [dm6]	A	T	3.433e^-4	0.946	UPSTREAM CG11498 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25986443	3R_25986443_SNP [dm3] 3R_30160721_SNP [dm6]	A	T	3.433e^-4	0.946	UPSTREAM CG11498 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11288419	2L_11288419_SNP [dm3] 2L_11288419_SNP [dm6]	A	G	3.436e^-4	0.946	INTERGENIC
2L	13998264	2L_13998264_INS [dm3] 2L_13998264_INS [dm6]	T	TTAGAAAGT	3.436e^-4	0.946	INTRON rk
2R	13385678	2R_13385678_SNP [dm3] 2R_17498173_SNP [dm6]	G	A	3.439e^-4	0.946	INTERGENIC
3R	26619006	3R_26619006_SNP [dm3] 3R_30793284_SNP [dm6]	G	T	3.449e^-4	0.946	SYNONYMOUS_CODING wts	TF binding site mE1_TFBS_chinmo
3L	10446376	3L_10446376_SNP [dm3] 3L_10453276_SNP [dm6]	A	T	3.451e^-4	0.946	INTERGENIC
3L	4270024	3L_4270024_SNP [dm3] 3L_4270024_SNP [dm6]	A	T	3.459e^-4	0.946	INTRON CG1273	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	4270079	3L_4270079_SNP [dm3] 3L_4270079_SNP [dm6]	T	A	3.459e^-4	0.946	INTRON CG1273	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	4270149	3L_4270149_SNP [dm3] 3L_4270149_SNP [dm6]	T	A	3.459e^-4	0.946	INTRON CG1273	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	10607652	2R_10607652_SNP [dm3] 2R_14720147_SNP [dm6]	G	A	3.462e^-4	0.946	INTERGENIC
2R	12711083	2R_12711083_SNP [dm3] 2R_16823578_SNP [dm6]	G	T	3.464e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	14849383	3R_14849383_SNP [dm3] 3R_19023661_SNP [dm6]	A	G	3.466e^-4	0.946	UPSTREAM CG14286 INTRON CG6005	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5464439	3L_5464439_SNP [dm3] 3L_5471339_SNP [dm6]	T	A	3.470e^-4	0.946	INTERGENIC
3L	5464445	3L_5464445_SNP [dm3] 3L_5471345_SNP [dm6]	T	C	3.470e^-4	0.946	INTERGENIC
X	14580194	X_14580194_DEL [dm3] X_14686161_DEL [dm6]	AT	A	3.480e^-4	0.946	UTR_3_PRIME NetB
2L	11288236	2L_11288236_DEL [dm3] 2L_11288236_DEL [dm6]	GG	A	3.497e^-4	0.946	INTERGENIC
2L	11288293	2L_11288293_SNP [dm3] 2L_11288293_SNP [dm6]	A	G	3.497e^-4	0.946	INTERGENIC
2L	11288294	2L_11288294_SNP [dm3] 2L_11288294_SNP [dm6]	T	G	3.497e^-4	0.946	INTERGENIC
2L	12990420	2L_12990420_SNP [dm3] 2L_12990420_SNP [dm6]	G	A	3.506e^-4	0.946	INTERGENIC
3L	12973850	3L_12973850_SNP [dm3] 3L_12980750_SNP [dm6]	C	G	3.518e^-4	0.946	INTERGENIC
2L	3380210	2L_3380210_SNP [dm3] 2L_3380210_SNP [dm6]	C	G	3.556e^-4	0.946	INTERGENIC
3L	9252209	3L_9252209_SNP [dm3] 3L_9259109_SNP [dm6]	T	G	3.565e^-4	0.946	INTRON GluRIB
2L	14619830	2L_14619830_SNP [dm3] 2L_14619830_SNP [dm6]	A	G	3.566e^-4	0.946	DOWNSTREAM Adhr & 1 other INTRON osp
2L	14619849	2L_14619849_SNP [dm3] 2L_14619849_SNP [dm6]	T	G	3.566e^-4	0.946	DOWNSTREAM Adhr & 1 other INTRON osp
3L	7904226	3L_7904226_SNP [dm3] 3L_7911126_SNP [dm6]	G	T	3.573e^-4	0.946	INTRON pbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2735023	2L_2735023_INS [dm3] 2L_2735023_INS [dm6]	G	TA	3.573e^-4	0.946	UPSTREAM CG31689 INTRON CG31689
2L	11293810	2L_11293810_SNP [dm3] 2L_11293810_SNP [dm6]	T	A	3.576e^-4	0.946	INTERGENIC
3L	9732946	3L_9732946_SNP [dm3] 3L_9739846_SNP [dm6]	A	G	3.585e^-4	0.946	UPSTREAM CG42268 INTRON CG42268	TF binding site mE1_TFBS_cad
3L	5229784	3L_5229784_SNP [dm3] 3L_5236684_SNP [dm6]	A	T	3.588e^-4	0.946	DOWNSTREAM CG4669 INTRON shep
3L	10786855	3L_10786855_SNP [dm3] 3L_10793755_SNP [dm6]	A	G	3.593e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	13418820	3R_13418820_SNP [dm3] 3R_17593098_SNP [dm6]	C	A	3.600e^-4	0.946	INTERGENIC
3R	25985113	3R_25985113_SNP [dm3] 3R_30159391_SNP [dm6]	G	A	3.600e^-4	0.946	INTRON CG11498
3R	19021410	3R_19021410_SNP [dm3] 3R_23195688_SNP [dm6]	G	A	3.612e^-4	0.946	INTRON cnc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15794609	X_15794609_SNP [dm3] X_15900576_SNP [dm6]	A	C	3.637e^-4	0.946	INTRON shi
2L	4568520	2L_4568520_SNP [dm3] 2L_4568520_SNP [dm6]	T	C	3.646e^-4	0.946	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	12922446	3R_12922446_SNP [dm3] 3R_17096724_SNP [dm6]	G	A	3.649e^-4	0.946	INTRON cher
3R	19615081	3R_19615081_SNP [dm3] 3R_23789359_SNP [dm6]	C	A	3.665e^-4	0.946	INTRON mbc
3R	26634043	3R_26634043_SNP [dm3] 3R_30808321_SNP [dm6]	G	A	3.667e^-4	0.946	UPSTREAM cindr DOWNSTREAM dj-1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	15400331	2L_15400331_SNP [dm3] 2L_15400331_SNP [dm6]	C	G	3.669e^-4	0.946	UPSTREAM CR44860 EXON CR45374
2L	12167556	2L_12167556_SNP [dm3] 2L_12167556_SNP [dm6]	T	A	3.673e^-4	0.946	DOWNSTREAM ZnT33D INTRON CG31760
2L	11288345	2L_11288345_SNP [dm3] 2L_11288345_SNP [dm6]	T	A	3.680e^-4	0.946	INTERGENIC
2L	17798529	2L_17798529_SNP [dm3] 2L_17798529_SNP [dm6]	G	A	3.683e^-4	0.946	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad
2L	17798535	2L_17798535_SNP [dm3] 2L_17798535_SNP [dm6]	T	C	3.683e^-4	0.946	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad
3L	20169419	3L_20169419_SNP [dm3] 3L_20176319_SNP [dm6]	A	C	3.685e^-4	0.946	INTRON CG42674	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8426144	2R_8426144_SNP [dm3] 2R_12538639_SNP [dm6]	G	A	3.685e^-4	0.946	INTRON fra	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7211184	2L_7211184_DEL [dm3] 2L_7211184_DEL [dm6]	GTATG	G	3.697e^-4	0.946	INTRON CG13784
2R	17931322	2R_17931322_SNP [dm3] 2R_22043817_SNP [dm6]	G	A	3.697e^-4	0.946	UPSTREAM PpD5 INTERGENIC
3R	26599845	3R_26599845_SNP [dm3] 3R_30774123_SNP [dm6]	C	T	3.704e^-4	0.946	NON_SYNONYMOUS_CODING zfh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26466189	3R_26466189_SNP [dm3] 3R_30640467_SNP [dm6]	A	G	3.711e^-4	0.946	INTERGENIC
3L	10539577	3L_10539577_SNP [dm3] 3L_10546477_SNP [dm6]	A	T	3.725e^-4	0.946	INTRON A2bp1
3L	7489471	3L_7489471_SNP [dm3] 3L_7496371_SNP [dm6]	G	C	3.742e^-4	0.946	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
X	2566478	X_2566478_SNP [dm3] X_2672445_SNP [dm6]	T	G	3.744e^-4	0.946	INTRON sgg
3L	20175380	3L_20175380_SNP [dm3] 3L_20182280_SNP [dm6]	T	G	3.748e^-4	0.946	INTRON CG42674	TF binding site BDTNP1_TFBS_twi
2R	8448392	2R_8448392_SNP [dm3] 2R_12560887_SNP [dm6]	C	A	3.749e^-4	0.946	SYNONYMOUS_CODING fra	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6697021	2R_6697021_SNP [dm3] 2R_10809516_SNP [dm6]	C	T	3.752e^-4	0.946	UTR_5_PRIME CG12935 UPSTREAM CG12935 & 1 other	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	12265077	X_12265077_SNP [dm3] X_12371044_SNP [dm6]	A	G	3.753e^-4	0.946	INTERGENIC
2L	10148935	2L_10148935_SNP [dm3] 2L_10148935_SNP [dm6]	G	C	3.755e^-4	0.946	INTRON CG44153 & 1 other
2R	18272025	2R_18272025_SNP [dm3] 2R_22384520_SNP [dm6]	T	A	3.774e^-4	0.946	INTRON CG13506	TF binding site mE1_TFBS_Trl
3R	16145505	3R_16145505_SNP [dm3] 3R_20319783_SNP [dm6]	A	T	3.779e^-4	0.946	SYNONYMOUS_CODING CG42668
2R	13380673	2R_13380673_SNP [dm3] 2R_17493168_SNP [dm6]	G	A	3.779e^-4	0.946	UTR_3_PRIME NT5E-2 UPSTREAM CG30103	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	13380674	2R_13380674_SNP [dm3] 2R_17493169_SNP [dm6]	T	A	3.779e^-4	0.946	UTR_3_PRIME NT5E-2 UPSTREAM CG30103	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
X	17345922	X_17345922_SNP [dm3] X_17451889_SNP [dm6]	A	C	3.783e^-4	0.946	INTRON CG8568
2L	11288289	2L_11288289_SNP [dm3] 2L_11288289_SNP [dm6]	A	C	3.786e^-4	0.946	INTERGENIC
3R	9268999	3R_9268999_SNP [dm3] 3R_13443277_SNP [dm6]	G	C	3.819e^-4	0.946	EXON CR45679
X	9507891	X_9507891_SNP [dm3] X_9613858_SNP [dm6]	C	T	3.829e^-4	0.946	INTRON CG42797
3L	9657686	3L_9657686_SNP [dm3] 3L_9664586_SNP [dm6]	T	C	3.837e^-4	0.946	INTRON fry
3L	4400150	3L_4400150_DEL [dm3] 3L_4400150_DEL [dm6]	TATTTTAT	T	3.847e^-4	0.946	INTRON slow	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	4400167	3L_4400167_SNP [dm3] 3L_4400167_SNP [dm6]	G	C	3.847e^-4	0.946	INTRON slow	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	1024651	2L_1024651_SNP [dm3] 2L_1024651_SNP [dm6]	G	T	3.849e^-4	0.946	INTRON IA-2
2L	14703021	2L_14703021_SNP [dm3] 2L_14703021_SNP [dm6]	T	A	3.851e^-4	0.946	INTERGENIC
3R	26621104	3R_26621104_SNP [dm3] 3R_30795382_SNP [dm6]	T	A	3.855e^-4	0.946	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	3563487	3L_3563487_INS [dm3] 3L_3563487_INS [dm6]	T	TAT	3.868e^-4	0.946	INTRON Eip63E
3L	9646715	3L_9646715_SNP [dm3] 3L_9653615_SNP [dm6]	G	C	3.890e^-4	0.946	INTRON fry & 1 other
3R	14127837	3R_14127837_SNP [dm3] 3R_18302115_SNP [dm6]	T	C	3.893e^-4	0.946	UPSTREAM CG18600 DOWNSTREAM CG7126 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16673296	3L_16673296_DEL [dm3] 3L_16680196_DEL [dm6]	AA	A	3.894e^-4	0.946	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_dl
3L	7130469	3L_7130469_SNP [dm3] 3L_7137369_SNP [dm6]	A	C	3.897e^-4	0.946	INTRON melt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2R	19069520	2R_19069520_SNP [dm3] 2R_23181997_SNP [dm6]	A	T	3.898e^-4	0.946	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10194230	3L_10194230_SNP [dm3] 3L_10201130_SNP [dm6]	A	C	3.922e^-4	0.946	INTRON ect
2L	17936436	2L_17936436_SNP [dm3] 2L_17936436_SNP [dm6]	C	T	3.927e^-4	0.946	INTERGENIC
3R	11342118	3R_11342118_SNP [dm3] 3R_15516396_SNP [dm6]	C	A	3.930e^-4	0.946	INTERGENIC
2L	4486442	2L_4486442_SNP [dm3] 2L_4486442_SNP [dm6]	G	T	3.956e^-4	0.946	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2732665	3L_2732665_SNP [dm3] 3L_2732665_SNP [dm6]	A	G	3.973e^-4	0.946	INTRON Mrtf
3R	9994147	3R_9994147_SNP [dm3] 3R_14168425_SNP [dm6]	T	A	3.998e^-4	0.946	UTR_3_PRIME Dop1R1
3R	12361547	3R_12361547_SNP [dm3] 3R_16535825_SNP [dm6]	G	A	4.008e^-4	0.946	INTRON CG42342	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1024679	2L_1024679_SNP [dm3] 2L_1024679_SNP [dm6]	A	T	4.018e^-4	0.946	INTRON IA-2
3R	25286125	3R_25286125_SNP [dm3] 3R_29460403_SNP [dm6]	G	A	4.024e^-4	0.946	INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9871631	3R_9871631_SNP [dm3] 3R_14045909_SNP [dm6]	G	A	4.030e^-4	0.946	INTERGENIC
2L	13433914	2L_13433914_SNP [dm3] 2L_13433914_SNP [dm6]	C	G	4.033e^-4	0.946	INTRON CG42784	TF binding site mE1_TFBS_cad
3R	21502780	3R_21502780_SNP [dm3] 3R_25677058_SNP [dm6]	C	T	4.038e^-4	0.946	UTR_3_PRIME Lgr3 UPSTREAM CR45225 DOWNSTREAM CG4730
3R	12210079	3R_12210079_SNP [dm3] 3R_16384357_SNP [dm6]	T	A	4.045e^-4	0.946	INTRON ss	regulatory region REDfly_CRMs
3L	21033329	3L_21033329_SNP [dm3] 3L_21040229_SNP [dm6]	G	T	4.046e^-4	0.946	INTRON siz
3R	26625216	3R_26625216_SNP [dm3] 3R_30799494_SNP [dm6]	C	A	4.048e^-4	0.946	INTRON wts
3L	11624239	3L_11624239_SNP [dm3] 3L_11631139_SNP [dm6]	A	T	4.050e^-4	0.946	UPSTREAM CG32091 DOWNSTREAM CG18815 INTERGENIC
3L	3473814	3L_3473814_SNP [dm3] 3L_3473814_SNP [dm6]	G	A	4.050e^-4	0.946	INTRON CG42324
2L	11288275	2L_11288275_SNP [dm3] 2L_11288275_SNP [dm6]	T	C	4.052e^-4	0.946	INTERGENIC
2R	9252900	2R_9252900_SNP [dm3] 2R_13365395_SNP [dm6]	C	A	4.052e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17681298	3L_17681298_SNP [dm3] 3L_17688198_SNP [dm6]	A	G	4.060e^-4	0.946	INTERGENIC
X	15861327	X_15861327_SNP [dm3] X_15967294_SNP [dm6]	G	T	4.063e^-4	0.946	INTRON mmd
2L	16262120	2L_16262120_SNP [dm3] 2L_16262120_SNP [dm6]	A	G	4.064e^-4	0.946	UPSTREAM CG4935 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	12727816	2L_12727816_SNP [dm3] 2L_12727816_SNP [dm6]	T	A	4.070e^-4	0.946	INTRON MRP
3L	11803601	3L_11803601_SNP [dm3] 3L_11810501_SNP [dm6]	T	A	4.074e^-4	0.946	INTRON CG42255
X	8508370	X_8508370_SNP [dm3] X_8614337_SNP [dm6]	T	C	4.076e^-4	0.946	INTERGENIC
2L	10085334	2L_10085334_SNP [dm3] 2L_10085334_SNP [dm6]	G	A	4.080e^-4	0.946	INTRON CG44153
2R	18880889	2R_18880889_SNP [dm3] 2R_22993366_SNP [dm6]	G	T	4.082e^-4	0.946	DOWNSTREAM CG9896 INTRON twi
3L	7200715	3L_7200715_SNP [dm3] 3L_7207615_SNP [dm6]	A	G	4.091e^-4	0.946	INTERGENIC
3L	11513216	3L_11513216_SNP [dm3] 3L_11520116_SNP [dm6]	T	C	4.097e^-4	0.946	SYNONYMOUS_CODING Fuca DOWNSTREAM CG11714
2R	7060609	2R_7060609_SNP [dm3] 2R_11173104_SNP [dm6]	C	A	4.099e^-4	0.946	UPSTREAM CG13229 & 1 other INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	13117351	2L_13117351_SNP [dm3] 2L_13117351_SNP [dm6]	T	A	4.100e^-4	0.946	INTERGENIC
3R	22760525	3R_22760525_SNP [dm3] 3R_26934803_SNP [dm6]	A	C	4.115e^-4	0.946	INTRON sda
2L	17798351	2L_17798351_SNP [dm3] 2L_17798351_SNP [dm6]	A	G	4.127e^-4	0.946	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad
3R	12930910	3R_12930910_SNP [dm3] 3R_17105188_SNP [dm6]	C	A	4.130e^-4	0.946	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11639554	2R_11639554_SNP [dm3] 2R_15752049_SNP [dm6]	A	G	4.131e^-4	0.946	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	3627644	X_3627644_SNP [dm3] X_3733611_SNP [dm6]	T	C	4.133e^-4	0.946	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14619759	2L_14619759_SNP [dm3] 2L_14619759_SNP [dm6]	G	A	4.142e^-4	0.946	DOWNSTREAM Adhr & 1 other INTRON osp
3R	2585624	3R_2585624_SNP [dm3] 3R_6759902_SNP [dm6]	A	G	4.144e^-4	0.946	UPSTREAM bcd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	2566481	X_2566481_DEL [dm3] X_2672448_DEL [dm6]	AACAATCAA	A	4.145e^-4	0.946	INTRON sgg
3R	14287613	3R_14287613_SNP [dm3] 3R_18461891_SNP [dm6]	A	T	4.145e^-4	0.946	INTRON fru
2L	11308479	2L_11308479_INS [dm3] 2L_11308479_INS [dm6]	G	GG	4.145e^-4	0.946	DOWNSTREAM CR43721 INTERGENIC
2L	16049737	2L_16049737_SNP [dm3] 2L_16049737_SNP [dm6]	G	A	4.149e^-4	0.946	UPSTREAM beat-Ia DOWNSTREAM BicC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	15048079	3R_15048079_SNP [dm3] 3R_19222357_SNP [dm6]	T	A	4.169e^-4	0.946	INTRON vib
3L	4271698	3L_4271698_SNP [dm3] 3L_4271698_SNP [dm6]	A	C	4.170e^-4	0.946	INTRON CG1273
3L	8236960	3L_8236960_SNP [dm3] 3L_8243860_SNP [dm6]	G	A	4.178e^-4	0.946	INTRON Dscam4
2L	4351216	2L_4351216_SNP [dm3] 2L_4351216_SNP [dm6]	C	G	4.184e^-4	0.946	EXON CR44700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3250741	X_3250741_SNP [dm3] X_3356708_SNP [dm6]	G	T	4.192e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	18496314	2L_18496314_SNP [dm3] 2L_18496314_SNP [dm6]	G	A	4.207e^-4	0.946	INTRON kon
3R	26673125	3R_26673125_SNP [dm3] 3R_30847403_SNP [dm6]	C	T	4.211e^-4	0.946	INTERGENIC
3R	26673177	3R_26673177_SNP [dm3] 3R_30847455_SNP [dm6]	A	G	4.211e^-4	0.946	INTERGENIC
2L	8360301	2L_8360301_SNP [dm3] 2L_8360301_SNP [dm6]	T	C	4.242e^-4	0.946	SYNONYMOUS_CODING CG7627	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26673061	3R_26673061_SNP [dm3] 3R_30847339_SNP [dm6]	T	G	4.251e^-4	0.946	INTERGENIC
2L	9558031	2L_9558031_SNP [dm3] 2L_9558031_SNP [dm6]	T	A	4.254e^-4	0.946	INTRON jp
3L	2413135	3L_2413135_SNP [dm3] 3L_2413135_SNP [dm6]	A	G	4.256e^-4	0.946	UPSTREAM CG45186 INTRON CG45186
2L	2125229	2L_2125229_SNP [dm3] 2L_2125229_SNP [dm6]	A	G	4.263e^-4	0.946	INTERGENIC
2R	7443254	2R_7443254_SNP [dm3] 2R_11555749_SNP [dm6]	C	A	4.265e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18221274	2R_18221274_SNP [dm3] 2R_22333769_SNP [dm6]	G	T	4.270e^-4	0.946	UTR_3_PRIME Liprin-gamma DOWNSTREAM pgc & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14854838	3R_14854838_SNP [dm3] 3R_19029116_SNP [dm6]	C	T	4.272e^-4	0.946	START_GAINED P5cr UTR_5_PRIME P5cr UPSTREAM gatA DOWNSTREAM Prp18	TF binding site mE1_TFBS_cad
3R	14854841	3R_14854841_SNP [dm3] 3R_19029119_SNP [dm6]	T	C	4.272e^-4	0.946	UTR_5_PRIME P5cr UPSTREAM gatA DOWNSTREAM Prp18	TF binding site mE1_TFBS_cad
2R	8584203	2R_8584203_SNP [dm3] 2R_12696698_SNP [dm6]	A	C	4.285e^-4	0.946	INTERGENIC
X	18375171	X_18375171_SNP [dm3] X_18481138_SNP [dm6]	A	T	4.288e^-4	0.946	DOWNSTREAM CR45714 INTRON Hayan
3L	5445026	3L_5445026_SNP [dm3] 3L_5451926_SNP [dm6]	G	A	4.295e^-4	0.946	INTERGENIC
2L	4161318	2L_4161318_SNP [dm3] 2L_4161318_SNP [dm6]	T	A	4.295e^-4	0.946	INTERGENIC
2L	4161325	2L_4161325_SNP [dm3] 2L_4161325_SNP [dm6]	C	T	4.295e^-4	0.946	INTERGENIC
2L	12154665	2L_12154665_SNP [dm3] 2L_12154665_SNP [dm6]	C	G	4.315e^-4	0.946	INTRON CG31760
2L	18043089	2L_18043089_SNP [dm3] 2L_18043089_SNP [dm6]	T	A	4.319e^-4	0.946	INTRON rdo
2L	17798505	2L_17798505_SNP [dm3] 2L_17798505_SNP [dm6]	T	C	4.331e^-4	0.946	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad
3R	13974089	3R_13974089_SNP [dm3] 3R_18148367_SNP [dm6]	T	A	4.334e^-4	0.946	INTERGENIC
3R	13418814	3R_13418814_SNP [dm3] 3R_17593092_SNP [dm6]	A	C	4.349e^-4	0.946	INTERGENIC
3R	25987577	3R_25987577_SNP [dm3] 3R_30161855_SNP [dm6]	T	C	4.402e^-4	0.946	INTERGENIC
3R	26621193	3R_26621193_SNP [dm3] 3R_30795471_SNP [dm6]	A	T	4.409e^-4	0.946	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	1308164	2L_1308164_SNP [dm3] 2L_1308164_SNP [dm6]	C	T	4.417e^-4	0.946	INTERGENIC
2L	11288248	2L_11288248_SNP [dm3] 2L_11288248_SNP [dm6]	T	C	4.421e^-4	0.946	INTERGENIC
2L	11288249	2L_11288249_SNP [dm3] 2L_11288249_SNP [dm6]	T	A	4.421e^-4	0.946	INTERGENIC
2R	16116157	2R_16116157_SNP [dm3] 2R_20228652_SNP [dm6]	A	G	4.425e^-4	0.946	UPSTREAM tRNA:G3:56EFa INTERGENIC
X	5493581	X_5493581_SNP [dm3] X_5599548_SNP [dm6]	G	A	4.428e^-4	0.946	INTRON Vsx1
X	20156725	X_20156725_SNP [dm3] X_20285698_SNP [dm6]	A	G	4.431e^-4	0.946	INTERGENIC
X	20156726	X_20156726_SNP [dm3] X_20285699_SNP [dm6]	T	A	4.431e^-4	0.946	INTERGENIC
X	17345462	X_17345462_SNP [dm3] X_17451429_SNP [dm6]	T	G	4.440e^-4	0.946	INTRON CG8568	TF binding site mE1_TFBS_cad
2R	1589799	2R_1589799_SNP [dm3] 2R_5702294_SNP [dm6]	G	A	4.443e^-4	0.946	SPLICE_SITE_DONOR vlc START_GAINED vlc UTR_5_PRIME vlc UPSTREAM vlc INTRON vlc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19612405	3R_19612405_SNP [dm3] 3R_23786683_SNP [dm6]	T	G	4.449e^-4	0.946	INTRON mbc
2L	8646296	2L_8646296_SNP [dm3] 2L_8646296_SNP [dm6]	T	C	4.459e^-4	0.946	INTRON Sema-1a
3L	11102736	3L_11102736_DEL [dm3] 3L_11109636_DEL [dm6]	TGATT	T	4.462e^-4	0.946	UPSTREAM CG7638 & 1 other DOWNSTREAM CG12522 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10460566	2L_10460566_SNP [dm3] 2L_10460566_SNP [dm6]	G	T	4.467e^-4	0.946	INTRON LM408
2L	20359648	2L_20359648_SNP [dm3] 2L_20359648_SNP [dm6]	G	A	4.478e^-4	0.946	DOWNSTREAM RtGEF INTRON RtGEF
2L	2189681	2L_2189681_SNP [dm3] 2L_2189681_SNP [dm6]	G	T	4.481e^-4	0.946	UPSTREAM CR44065 & 1 other DOWNSTREAM CG10874 INTERGENIC
2L	2189682	2L_2189682_SNP [dm3] 2L_2189682_SNP [dm6]	G	C	4.481e^-4	0.946	UPSTREAM CR44065 & 1 other DOWNSTREAM CG10874 INTERGENIC
2R	20518354	2R_20518354_SNP [dm3] 2R_24630831_SNP [dm6]	G	T	4.489e^-4	0.946	UPSTREAM Cyp9c1 DOWNSTREAM CR43787 INTRON CG13594
3L	10763741	3L_10763741_DEL [dm3] 3L_10770641_DEL [dm6]	GG	G	4.491e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr
2R	6680646	2R_6680646_DEL [dm3] 2R_10793141_DEL [dm6]	ATATATTACATATAT...	A	4.499e^-4	0.946	DOWNSTREAM mthl13 INTRON CG33144
3R	16145260	3R_16145260_SNP [dm3] 3R_20319538_SNP [dm6]	A	C	4.505e^-4	0.946	INTRON CG42668
2L	10464537	2L_10464537_SNP [dm3] 2L_10464537_SNP [dm6]	G	A	4.513e^-4	0.946	SYNONYMOUS_CODING RluA-1 UTR_3_PRIME RluA-1
2L	17797674	2L_17797674_SNP [dm3] 2L_17797674_SNP [dm6]	T	G	4.516e^-4	0.946	SYNONYMOUS_CODING CadN2
3R	20555328	3R_20555328_SNP [dm3] 3R_24729606_SNP [dm6]	A	T	4.524e^-4	0.946	INTRON tok
3L	11461018	3L_11461018_SNP [dm3] 3L_11467918_SNP [dm6]	T	A	4.526e^-4	0.946	INTERGENIC
3R	12364760	3R_12364760_SNP [dm3] 3R_16539038_SNP [dm6]	A	G	4.542e^-4	0.946	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
2R	6867923	2R_6867923_SNP [dm3] 2R_10980418_SNP [dm6]	T	C	4.545e^-4	0.946	UTR_3_PRIME luna
3L	17248338	3L_17248338_SNP [dm3] 3L_17255238_SNP [dm6]	G	A	4.545e^-4	0.946	INTRON CR43870	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	5464470	3L_5464470_SNP [dm3] 3L_5471370_SNP [dm6]	C	T	4.549e^-4	0.946	INTERGENIC
3L	3585570	3L_3585570_SNP [dm3] 3L_3585570_SNP [dm6]	T	C	4.560e^-4	0.946	INTRON Eip63E
3R	12930961	3R_12930961_SNP [dm3] 3R_17105239_SNP [dm6]	G	A	4.566e^-4	0.946	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7390249	3L_7390249_SNP [dm3] 3L_7397149_SNP [dm6]	A	C	4.570e^-4	0.946	NON_SYNONYMOUS_CODING CG32379
3L	7390266	3L_7390266_SNP [dm3] 3L_7397166_SNP [dm6]	A	G	4.570e^-4	0.946	NON_SYNONYMOUS_CODING CG32379
3L	12059139	3L_12059139_SNP [dm3] 3L_12066039_SNP [dm6]	G	A	4.574e^-4	0.946	INTERGENIC
X	8375349	X_8375349_SNP [dm3] X_8481316_SNP [dm6]	A	T	4.585e^-4	0.946	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375351	X_8375351_SNP [dm3] X_8481318_SNP [dm6]	A	T	4.585e^-4	0.946	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375352	X_8375352_SNP [dm3] X_8481319_SNP [dm6]	A	T	4.585e^-4	0.946	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375354	X_8375354_SNP [dm3] X_8481321_SNP [dm6]	A	C	4.585e^-4	0.946	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375355	X_8375355_SNP [dm3] X_8481322_SNP [dm6]	C	T	4.585e^-4	0.946	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375360	X_8375360_DEL [dm3] X_8481327_DEL [dm6]	CAATA	C	4.585e^-4	0.946	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
2L	11295014	2L_11295014_SNP [dm3] 2L_11295014_SNP [dm6]	T	A	4.589e^-4	0.946	INTERGENIC
3R	11540128	3R_11540128_SNP [dm3] 3R_15714406_SNP [dm6]	G	A	4.590e^-4	0.946	INTERGENIC
2L	13204600	2L_13204600_SNP [dm3] 2L_13204600_SNP [dm6]	T	C	4.590e^-4	0.946	INTRON Pect	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	18496302	2L_18496302_SNP [dm3] 2L_18496302_SNP [dm6]	T	C	4.592e^-4	0.946	INTRON kon
2L	20125022	2L_20125022_SNP [dm3] 2L_20125022_SNP [dm6]	C	T	4.603e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8397485	2L_8397485_SNP [dm3] 2L_8397485_SNP [dm6]	A	G	4.619e^-4	0.946	NON_SYNONYMOUS_CODING CG13385	TF binding site mE1_TFBS_cad
3R	11107642	3R_11107642_SNP [dm3] 3R_15281920_SNP [dm6]	C	G	4.621e^-4	0.946	INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	20156719	X_20156719_SNP [dm3] X_20285692_SNP [dm6]	G	A	4.621e^-4	0.946	INTERGENIC
3L	12306876	3L_12306876_INS [dm3] 3L_12313776_INS [dm6]	A	AA	4.635e^-4	0.946	INTERGENIC
3L	1504329	3L_1504329_SNP [dm3] 3L_1504329_SNP [dm6]	A	G	4.639e^-4	0.946	INTRON Psa & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	20085490	3L_20085490_SNP [dm3] 3L_20092390_SNP [dm6]	A	C	4.663e^-4	0.946	INTERGENIC
3L	8585137	3L_8585137_SNP [dm3] 3L_8592037_SNP [dm6]	G	T	4.686e^-4	0.946	NON_SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4976769	2R_4976769_SNP [dm3] 2R_9089264_SNP [dm6]	C	A	4.722e^-4	0.946	DOWNSTREAM CG8080 INTRON Dbp45A
3L	17559457	3L_17559457_SNP [dm3] 3L_17566357_SNP [dm6]	T	C	4.726e^-4	0.946	UPSTREAM snoRNA:Me28S-A576 INTRON Eip74EF	TF binding site mE1_TFBS_cad
3R	19615059	3R_19615059_SNP [dm3] 3R_23789337_SNP [dm6]	T	A	4.727e^-4	0.946	INTRON mbc
3R	22590087	3R_22590087_SNP [dm3] 3R_26764365_SNP [dm6]	C	A	4.732e^-4	0.946	INTERGENIC
3R	7492913	3R_7492913_SNP [dm3] 3R_11667191_SNP [dm6]	G	T	4.735e^-4	0.946	INTRON CG42327
2R	8617661	2R_8617661_SNP [dm3] 2R_12730156_SNP [dm6]	T	A	4.735e^-4	0.946	INTRON CG42663	TF binding site BDTNP1_TFBS_dl
2R	12726946	2R_12726946_SNP [dm3] 2R_16839441_SNP [dm6]	C	T	4.738e^-4	0.946	EXON CR43650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	18691146	3R_18691146_SNP [dm3] 3R_22865424_SNP [dm6]	T	C	4.743e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	11289225	2L_11289225_SNP [dm3] 2L_11289225_SNP [dm6]	C	T	4.746e^-4	0.946	INTERGENIC
2L	15541209	2L_15541209_SNP [dm3] 2L_15541209_SNP [dm6]	A	C	4.759e^-4	0.946	INTERGENIC
3R	14825235	3R_14825235_SNP [dm3] 3R_18999513_SNP [dm6]	A	G	4.775e^-4	0.946	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5893722	3L_5893722_SNP [dm3] 3L_5900622_SNP [dm6]	T	C	4.781e^-4	0.946	DOWNSTREAM QC INTRON CG32409	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5893730	3L_5893730_SNP [dm3] 3L_5900630_SNP [dm6]	A	T	4.781e^-4	0.946	DOWNSTREAM QC INTRON CG32409	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7060612	2R_7060612_SNP [dm3] 2R_11173107_SNP [dm6]	A	G	4.781e^-4	0.946	UPSTREAM CG13229 & 1 other INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	12922202	3R_12922202_SNP [dm3] 3R_17096480_SNP [dm6]	T	A	4.782e^-4	0.946	UPSTREAM cher INTRON cher
2L	9816554	2L_9816554_SNP [dm3] 2L_9816554_SNP [dm6]	T	C	4.793e^-4	0.946	INTRON nAChRalpha6
2R	16764707	2R_16764707_SNP [dm3] 2R_20877202_SNP [dm6]	A	T	4.795e^-4	0.946	INTRON Ipk1
2L	10148947	2L_10148947_SNP [dm3] 2L_10148947_SNP [dm6]	C	T	4.809e^-4	0.946	INTRON CG44153 & 1 other
2L	10148948	2L_10148948_SNP [dm3] 2L_10148948_SNP [dm6]	T	C	4.809e^-4	0.946	INTRON CG44153 & 1 other
2L	10148952	2L_10148952_SNP [dm3] 2L_10148952_SNP [dm6]	G	A	4.809e^-4	0.946	INTRON CG44153 & 1 other
2L	9043145	2L_9043145_SNP [dm3] 2L_9043145_SNP [dm6]	T	C	4.813e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2276781	3R_2276781_SNP [dm3] 3R_6451059_SNP [dm6]	G	A	4.835e^-4	0.946	UTR_3_PRIME CG9727 DOWNSTREAM CG9727	TF binding site mE1_TFBS_cad
2L	2025882	2L_2025882_SNP [dm3] 2L_2025882_SNP [dm6]	T	A	4.835e^-4	0.946	INTRON CG4238
2L	11456319	2L_11456319_SNP [dm3] 2L_11456319_SNP [dm6]	A	C	4.838e^-4	0.946	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	11456322	2L_11456322_SNP [dm3] 2L_11456322_SNP [dm6]	T	A	4.838e^-4	0.946	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	18496803	2L_18496803_SNP [dm3] 2L_18496803_SNP [dm6]	T	A	4.850e^-4	0.946	INTRON kon
2L	18880271	2L_18880271_SNP [dm3] 2L_18880271_SNP [dm6]	A	C	4.857e^-4	0.946	INTRON tup	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	15826518	3R_15826518_SNP [dm3] 3R_20000796_SNP [dm6]	A	C	4.864e^-4	0.946	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
3R	18730819	3R_18730819_SNP [dm3] 3R_22905097_SNP [dm6]	G	A	4.868e^-4	0.946	INTRON klg
2R	6697543	2R_6697543_SNP [dm3] 2R_10810038_SNP [dm6]	G	A	4.881e^-4	0.946	NON_SYNONYMOUS_CODING CG12935 DOWNSTREAM CG7637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	10712202	3L_10712202_SNP [dm3] 3L_10719102_SNP [dm6]	A	T	4.900e^-4	0.946	INTERGENIC
X	4729499	X_4729499_SNP [dm3] X_4835466_SNP [dm6]	G	A	4.906e^-4	0.946	INTERGENIC
3L	3585622	3L_3585622_SNP [dm3] 3L_3585622_SNP [dm6]	A	T	4.908e^-4	0.946	INTRON Eip63E
3L	11102727	3L_11102727_SNP [dm3] 3L_11109627_SNP [dm6]	C	A	4.908e^-4	0.946	UPSTREAM CG7638 & 1 other DOWNSTREAM CG12522 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11102730	3L_11102730_INS [dm3] 3L_11109630_INS [dm6]	C	GTTAACT	4.908e^-4	0.946	UPSTREAM CG7638 & 1 other DOWNSTREAM CG12522 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12711993	2R_12711993_SNP [dm3] 2R_16824488_SNP [dm6]	A	G	4.913e^-4	0.946	UPSTREAM CG34459 INTERGENIC
3R	23874172	3R_23874172_SNP [dm3] 3R_28048450_SNP [dm6]	T	C	4.927e^-4	0.946	INTRON CG34362
3L	7398749	3L_7398749_SNP [dm3] 3L_7405649_SNP [dm6]	A	G	4.935e^-4	0.946	UPSTREAM pncr015:3L INTERGENIC
2L	4161344	2L_4161344_SNP [dm3] 2L_4161344_SNP [dm6]	T	C	4.941e^-4	0.946	INTERGENIC
2R	12711983	2R_12711983_SNP [dm3] 2R_16824478_SNP [dm6]	A	T	4.966e^-4	0.946	UPSTREAM CG34459 INTERGENIC
3L	10712124	3L_10712124_INS [dm3] 3L_10719024_INS [dm6]	C	CC	4.969e^-4	0.946	INTERGENIC
X	22196284	X_22196284_SNP [dm3] X_22794448_SNP [dm6]	C	T	4.973e^-4	0.946	INTRON CR44997
3L	7392852	3L_7392852_SNP [dm3] 3L_7399752_SNP [dm6]	A	T	4.976e^-4	0.946	UTR_3_PRIME CG8562 UPSTREAM CG18417
3R	14849502	3R_14849502_SNP [dm3] 3R_19023780_SNP [dm6]	A	G	4.978e^-4	0.946	SYNONYMOUS_CODING CG6005 UPSTREAM CG14286	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26621119	3R_26621119_SNP [dm3] 3R_30795397_SNP [dm6]	G	A	4.991e^-4	0.946	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	20435452	X_20435452_SNP [dm3] X_20564425_SNP [dm6]	G	C	4.994e^-4	0.946	INTRON RunxB	TF binding site mE1_TFBS_HSA
X	20435480	X_20435480_SNP [dm3] X_20564453_SNP [dm6]	G	C	4.994e^-4	0.946	INTRON RunxB	TF binding site mE1_TFBS_HSA
2L	8433905	2L_8433905_DEL [dm3] 2L_8433905_DEL [dm6]	AAATATGCAA	A	4.995e^-4	0.946	UPSTREAM grk DOWNSTREAM D12 INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4422253	2L_4422253_SNP [dm3] 2L_4422253_SNP [dm6]	C	G	4.996e^-4	0.946	INTRON CG15431
3R	18859471	3R_18859471_SNP [dm3] 3R_23033749_SNP [dm6]	G	T	5.013e^-4	0.946	INTRON CG13833
3L	18254696	3L_18254696_SNP [dm3] 3L_18261596_SNP [dm6]	A	T	5.023e^-4	0.946	INTERGENIC
3L	16080414	3L_16080414_SNP [dm3] 3L_16087314_SNP [dm6]	C	T	5.035e^-4	0.946	SYNONYMOUS_CODING Taspase1 DOWNSTREAM CG5235	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20836941	X_20836941_SNP [dm3] X_20965914_SNP [dm6]	C	T	5.038e^-4	0.946	UPSTREAM CG1304 INTERGENIC
X	20837002	X_20837002_SNP [dm3] X_20965975_SNP [dm6]	A	G	5.038e^-4	0.946	UPSTREAM CG1304 INTERGENIC
2R	7474843	2R_7474843_SNP [dm3] 2R_11587338_SNP [dm6]	C	G	5.041e^-4	0.946	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2L	4298509	2L_4298509_SNP [dm3] 2L_4298509_SNP [dm6]	G	T	5.046e^-4	0.946	INTRON tutl
2L	17797168	2L_17797168_SNP [dm3] 2L_17797168_SNP [dm6]	C	G	5.048e^-4	0.946	INTRON CadN2
3L	7023651	3L_7023651_SNP [dm3] 3L_7030551_SNP [dm6]	G	A	5.058e^-4	0.946	INTRON Mp
3R	10078058	3R_10078058_SNP [dm3] 3R_14252336_SNP [dm6]	T	C	5.071e^-4	0.946	INTRON Aats-met
X	20360002	X_20360002_SNP [dm3] X_20488975_SNP [dm6]	A	G	5.073e^-4	0.946	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl
3L	2710999	3L_2710999_SNP [dm3] 3L_2710999_SNP [dm6]	T	C	5.103e^-4	0.946	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25956376	3R_25956376_SNP [dm3] 3R_30130654_SNP [dm6]	C	T	5.105e^-4	0.946	NON_SYNONYMOUS_CODING CG31029	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2240192	3R_2240192_SNP [dm3] 3R_6414470_SNP [dm6]	G	T	5.109e^-4	0.946	INTRON gpp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	7739054	3R_7739054_SNP [dm3] 3R_11913332_SNP [dm6]	G	T	5.109e^-4	0.946	INTRON Cad87A
3L	8905436	3L_8905436_SNP [dm3] 3L_8912336_SNP [dm6]	T	C	5.112e^-4	0.946	START_GAINED mfr UTR_5_PRIME mfr UPSTREAM Tsp66E & 1 other	TF binding site BDTNP1_TFBS_dl
3L	19097873	3L_19097873_SNP [dm3] 3L_19104773_SNP [dm6]	A	T	5.113e^-4	0.946	DOWNSTREAM CG14082 INTERGENIC
2L	11288243	2L_11288243_SNP [dm3] 2L_11288243_SNP [dm6]	G	T	5.117e^-4	0.946	INTERGENIC
3R	15828101	3R_15828101_SNP [dm3] 3R_20002379_SNP [dm6]	A	T	5.129e^-4	0.946	INTRON Hs6st	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3627973	2L_3627973_SNP [dm3] 2L_3627973_SNP [dm6]	T	C	5.130e^-4	0.946	INTRON for
3L	12303370	3L_12303370_SNP [dm3] 3L_12310270_SNP [dm6]	C	A	5.136e^-4	0.946	UPSTREAM CG44355 INTERGENIC
3L	9648125	3L_9648125_SNP [dm3] 3L_9655025_SNP [dm6]	A	C	5.148e^-4	0.946	INTRON fry & 1 other
3R	12361514	3R_12361514_SNP [dm3] 3R_16535792_SNP [dm6]	C	A	5.158e^-4	0.946	INTRON CG42342	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11292461	2L_11292461_SNP [dm3] 2L_11292461_SNP [dm6]	T	A	5.159e^-4	0.946	INTERGENIC
3L	4162522	3L_4162522_SNP [dm3] 3L_4162522_SNP [dm6]	G	A	5.163e^-4	0.946	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	12179119	3L_12179119_SNP [dm3] 3L_12186019_SNP [dm6]	C	A	5.165e^-4	0.946	UTR_5_PRIME CG6910 INTRON CG6910
3L	4056180	3L_4056180_SNP [dm3] 3L_4056180_SNP [dm6]	T	C	5.165e^-4	0.946	INTRON CG1136
3L	4056192	3L_4056192_SNP [dm3] 3L_4056192_SNP [dm6]	T	A	5.165e^-4	0.946	INTRON CG1136
3L	18245957	3L_18245957_SNP [dm3] 3L_18252857_SNP [dm6]	C	T	5.167e^-4	0.946	DOWNSTREAM CheA75a INTERGENIC
2L	17797268	2L_17797268_SNP [dm3] 2L_17797268_SNP [dm6]	C	G	5.174e^-4	0.946	INTRON CadN2
3R	9879239	3R_9879239_SNP [dm3] 3R_14053517_SNP [dm6]	G	A	5.177e^-4	0.946	INTERGENIC
3L	13182162	3L_13182162_SNP [dm3] 3L_13189062_SNP [dm6]	A	T	5.182e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	20914880	2L_20914880_SNP [dm3] 2L_20914880_SNP [dm6]	G	T	5.190e^-4	0.946	INTRON sky & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_HSA transposable element FlyBase
3R	14238195	3R_14238195_SNP [dm3] 3R_18412473_SNP [dm6]	G	C	5.194e^-4	0.946	UPSTREAM CG10864 INTRON CG31122	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	3747936	3L_3747936_SNP [dm3] 3L_3747936_SNP [dm6]	A	G	5.196e^-4	0.946	INTRON CG32264
3R	14237860	3R_14237860_SNP [dm3] 3R_18412138_SNP [dm6]	G	C	5.201e^-4	0.946	UPSTREAM CG10864 INTRON CG31122	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3L	10809572	3L_10809572_SNP [dm3] 3L_10816472_SNP [dm6]	T	G	5.204e^-4	0.946	UPSTREAM CR45247 DOWNSTREAM CG42831 INTERGENIC
X	17345871	X_17345871_SNP [dm3] X_17451838_SNP [dm6]	A	T	5.207e^-4	0.946	INTRON CG8568
3L	9546728	3L_9546728_SNP [dm3] 3L_9553628_SNP [dm6]	T	C	5.210e^-4	0.946	INTRON CG42673
3L	5464447	3L_5464447_SNP [dm3] 3L_5471347_SNP [dm6]	T	A	5.243e^-4	0.946	INTERGENIC
3R	11409735	3R_11409735_SNP [dm3] 3R_15584013_SNP [dm6]	G	A	5.249e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	911066	3L_911066_SNP [dm3] 3L_911066_SNP [dm6]	A	G	5.252e^-4	0.946	UTR_3_PRIME nerfin-1	regulatory region REDfly_CRMs
3L	11505068	3L_11505068_SNP [dm3] 3L_11511968_SNP [dm6]	G	C	5.261e^-4	0.946	UPSTREAM Sgs3 INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
2L	8098974	2L_8098974_SNP [dm3] 2L_8098974_SNP [dm6]	T	G	5.263e^-4	0.946	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	8328995	3L_8328995_SNP [dm3] 3L_8335895_SNP [dm6]	G	T	5.272e^-4	0.946	UPSTREAM Cpr66Cb INTERGENIC
2L	8440469	2L_8440469_SNP [dm3] 2L_8440469_SNP [dm6]	A	T	5.280e^-4	0.946	SYNONYMOUS_CODING mus201
2L	2735028	2L_2735028_SNP [dm3] 2L_2735028_SNP [dm6]	C	G	5.304e^-4	0.946	UPSTREAM CG31689 INTRON CG31689
3L	14997656	3L_14997656_DEL [dm3] 3L_15004556_DEL [dm6]	TAGCAA	T	5.305e^-4	0.946	INTRON Reck
X	6803494	X_6803494_SNP [dm3] X_6909461_SNP [dm6]	T	A	5.317e^-4	0.946	INTRON CG14431
X	20844488	X_20844488_SNP [dm3] X_20973461_SNP [dm6]	A	G	5.320e^-4	0.946	INTERGENIC
2R	9980318	2R_9980318_SNP [dm3] 2R_14092813_SNP [dm6]	T	C	5.324e^-4	0.946	DOWNSTREAM CG42288 INTRON Prosap
2L	5147461	2L_5147461_SNP [dm3] 2L_5147461_SNP [dm6]	C	A	5.327e^-4	0.946	INTRON Msp300
2L	8353537	2L_8353537_SNP [dm3] 2L_8353537_SNP [dm6]	A	T	5.333e^-4	0.946	INTRON Mur29B	TF binding site mE1_TFBS_sens
3R	3962357	3R_3962357_SNP [dm3] 3R_8136635_SNP [dm6]	T	A	5.341e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	1444499	3L_1444499_SNP [dm3] 3L_1444499_SNP [dm6]	T	G	5.352e^-4	0.946	INTRON Ptp61F
3L	18245953	3L_18245953_SNP [dm3] 3L_18252853_SNP [dm6]	G	T	5.354e^-4	0.946	DOWNSTREAM CheA75a INTERGENIC
3L	9646530	3L_9646530_SNP [dm3] 3L_9653430_SNP [dm6]	G	A	5.364e^-4	0.946	INTRON fry & 1 other
2L	6157868	2L_6157868_SNP [dm3] 2L_6157868_SNP [dm6]	T	C	5.367e^-4	0.946	INTERGENIC
2R	18986216	2R_18986216_SNP [dm3] 2R_23098693_SNP [dm6]	C	T	5.367e^-4	0.946	INTERGENIC
3R	14127764	3R_14127764_SNP [dm3] 3R_18302042_SNP [dm6]	T	A	5.367e^-4	0.946	UPSTREAM CG18600 DOWNSTREAM CG7126 INTERGENIC	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11304890	3L_11304890_SNP [dm3] 3L_11311790_SNP [dm6]	A	G	5.373e^-4	0.946	START_GAINED CG7573 UTR_5_PRIME CG7573
X	17346182	X_17346182_SNP [dm3] X_17452149_SNP [dm6]	T	C	5.395e^-4	0.946	SYNONYMOUS_CODING CG8568
2L	5163476	2L_5163476_SNP [dm3] 2L_5163476_SNP [dm6]	T	C	5.410e^-4	0.946	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	5163477	2L_5163477_SNP [dm3] 2L_5163477_SNP [dm6]	G	A	5.410e^-4	0.946	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	26672639	3R_26672639_SNP [dm3] 3R_30846917_SNP [dm6]	T	A	5.423e^-4	0.946	INTERGENIC
3R	12876516	3R_12876516_INS [dm3] 3R_17050794_INS [dm6]	G	GACGCCG	5.444e^-4	0.946	INTERGENIC
2R	19216060	2R_19216060_SNP [dm3] 2R_23328537_SNP [dm6]	A	T	5.452e^-4	0.946	UPSTREAM CG30417 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19216066	2R_19216066_INS [dm3] 2R_23328543_INS [dm6]	A	ACAATA	5.452e^-4	0.946	UPSTREAM CG30417 DOWNSTREAM CG30413 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19216095	2R_19216095_SNP [dm3] 2R_23328572_SNP [dm6]	A	G	5.452e^-4	0.946	UPSTREAM CG30417 DOWNSTREAM CG30413 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6917271	3L_6917271_SNP [dm3] 3L_6924171_SNP [dm6]	G	T	5.468e^-4	0.946	INTERGENIC
2L	6610648	2L_6610648_SNP [dm3] 2L_6610648_SNP [dm6]	C	T	5.472e^-4	0.946	UPSTREAM CG11050 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
3L	13292712	3L_13292712_INS [dm3] 3L_13299612_INS [dm6]	A	ATT	5.482e^-4	0.946	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC
X	6965107	X_6965107_INS [dm3] X_7071074_INS [dm6]	A	AA	5.487e^-4	0.946	INTRON CG4607
X	14228198	X_14228198_SNP [dm3] X_14334165_SNP [dm6]	A	G	5.492e^-4	0.946	INTRON dpr8	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15925314	3R_15925314_SNP [dm3] 3R_20099592_SNP [dm6]	C	T	5.493e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	2025251	2L_2025251_SNP [dm3] 2L_2025251_SNP [dm6]	G	A	5.499e^-4	0.946	INTRON CG4238
3L	14997654	3L_14997654_SNP [dm3] 3L_15004554_SNP [dm6]	A	G	5.503e^-4	0.946	INTRON Reck
3R	12334570	3R_12334570_SNP [dm3] 3R_16508848_SNP [dm6]	T	C	5.504e^-4	0.946	INTRON CG42342	TF binding site BDTNP1_TFBS_twi
X	13612667	X_13612667_SNP [dm3] X_13718634_SNP [dm6]	C	A	5.519e^-4	0.946	UPSTREAM CG9940 DOWNSTREAM CG9941 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	20518898	3L_20518898_SNP [dm3] 3L_20525798_SNP [dm6]	G	A	5.521e^-4	0.946	NON_SYNONYMOUS_CODING CG4825 UPSTREAM CG4858	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9732931	3L_9732931_SNP [dm3] 3L_9739831_SNP [dm6]	T	G	5.529e^-4	0.946	UPSTREAM CG42268 INTRON CG42268	TF binding site mE1_TFBS_cad
2L	16799516	2L_16799516_SNP [dm3] 2L_16799516_SNP [dm6]	G	A	5.535e^-4	0.946	UPSTREAM Ugt36Bc INTRON Ugt36Bc
2L	20312585	2L_20312585_SNP [dm3] 2L_20312585_SNP [dm6]	T	C	5.538e^-4	0.946	INTRON spir
2L	835977	2L_835977_SNP [dm3] 2L_835977_SNP [dm6]	C	T	5.539e^-4	0.946	NON_SYNONYMOUS_CODING drongo INTRON drongo
3R	17761413	3R_17761413_SNP [dm3] 3R_21935691_SNP [dm6]	G	A	5.543e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15207756	2R_15207756_SNP [dm3] 2R_19320251_SNP [dm6]	T	G	5.545e^-4	0.946	INTRON Rgk1
3L	10442701	3L_10442701_SNP [dm3] 3L_10449601_SNP [dm6]	G	A	5.545e^-4	0.946	INTERGENIC
3L	18103113	3L_18103113_SNP [dm3] 3L_18110013_SNP [dm6]	G	A	5.553e^-4	0.946	SYNONYMOUS_CODING mus304 UPSTREAM CG5147	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15407871	2R_15407871_SNP [dm3] 2R_19520366_SNP [dm6]	T	C	5.556e^-4	0.946	UTR_3_PRIME sm
2L	4953814	2L_4953814_SNP [dm3] 2L_4953814_SNP [dm6]	A	C	5.567e^-4	0.946	UPSTREAM Jon25Bii DOWNSTREAM Jon25Bi INTERGENIC
3L	12194708	3L_12194708_SNP [dm3] 3L_12201608_SNP [dm6]	T	C	5.574e^-4	0.946	INTRON Adk1
2R	2550587	2R_2550587_SNP [dm3] 2R_6663082_SNP [dm6]	G	T	5.587e^-4	0.946	UPSTREAM Dpit47 DOWNSTREAM CR45128 INTRON Adf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	2551073	2R_2551073_SNP [dm3] 2R_6663568_SNP [dm6]	C	T	5.587e^-4	0.946	INTRON Adf1 EXON CR45128	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	2558020	2R_2558020_SNP [dm3] 2R_6670515_SNP [dm6]	T	A	5.587e^-4	0.946	UTR_3_PRIME Hsepi DOWNSTREAM CG9410
2R	2560098	2R_2560098_SNP [dm3] 2R_6672593_SNP [dm6]	G	A	5.587e^-4	0.946	SYNONYMOUS_CODING Hsepi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2R	2564135	2R_2564135_SNP [dm3] 2R_6676630_SNP [dm6]	G	T	5.587e^-4	0.946	UPSTREAM CG17266 DOWNSTREAM Tdc1 INTRON CG9422	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
2R	2574620	2R_2574620_DEL [dm3] 2R_6687115_DEL [dm6]	CCCC	C	5.587e^-4	0.946	INTRON CG9422 & 1 other	TF binding site mE1_TFBS_cad
2R	2574649	2R_2574649_SNP [dm3] 2R_6687144_SNP [dm6]	C	T	5.587e^-4	0.946	SYNONYMOUS_CODING Tdc2 INTRON CG9422	TF binding site mE1_TFBS_cad
3R	13775494	3R_13775494_SNP [dm3] 3R_17949772_SNP [dm6]	C	T	5.594e^-4	0.946	INTRON cpo	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	1713150	3R_1713150_SNP [dm3] 3R_5887428_SNP [dm6]	G	C	5.598e^-4	0.946	INTRON CG34113
3L	15994738	3L_15994738_SNP [dm3] 3L_16001638_SNP [dm6]	A	G	5.600e^-4	0.946	INTRON CG5830
2R	17943862	2R_17943862_SNP [dm3] 2R_22056357_SNP [dm6]	A	G	5.602e^-4	0.946	DOWNSTREAM CG13500 INTERGENIC
3L	7130369	3L_7130369_SNP [dm3] 3L_7137269_SNP [dm6]	A	T	5.602e^-4	0.946	INTRON melt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3L	7795018	3L_7795018_SNP [dm3] 3L_7801918_SNP [dm6]	T	A	5.613e^-4	0.946	INTRON CG32369
2L	13045781	2L_13045781_SNP [dm3] 2L_13045781_SNP [dm6]	T	C	5.618e^-4	0.946	INTRON CG9932
2R	6393924	2R_6393924_SNP [dm3] 2R_10506419_SNP [dm6]	G	T	5.620e^-4	0.946	DOWNSTREAM lola INTRON lola
3R	10172095	3R_10172095_SNP [dm3] 3R_14346373_SNP [dm6]	C	T	5.625e^-4	0.946	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19216112	2R_19216112_SNP [dm3] 2R_23328589_SNP [dm6]	A	T	5.626e^-4	0.946	DOWNSTREAM CG30413 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11294250	2L_11294250_SNP [dm3] 2L_11294250_SNP [dm6]	C	A	5.628e^-4	0.946	INTERGENIC
2L	12989502	2L_12989502_SNP [dm3] 2L_12989502_SNP [dm6]	A	G	5.632e^-4	0.946	INTERGENIC
2L	12989580	2L_12989580_SNP [dm3] 2L_12989580_SNP [dm6]	G	A	5.632e^-4	0.946	INTERGENIC
2L	12989653	2L_12989653_SNP [dm3] 2L_12989653_SNP [dm6]	A	G	5.632e^-4	0.946	INTERGENIC
2L	12989823	2L_12989823_SNP [dm3] 2L_12989823_SNP [dm6]	A	G	5.632e^-4	0.946	INTERGENIC
X	584024	X_584024_SNP [dm3] X_689991_SNP [dm6]	G	C	5.633e^-4	0.946	INTRON sdk	TF binding site BDTNP1_TFBS_da
3L	3989944	3L_3989944_INS [dm3] 3L_3989944_INS [dm6]	A	ACCTTACTTCA...	5.636e^-4	0.946	UTR_3_PRIME scrt
3L	3989960	3L_3989960_SNP [dm3] 3L_3989960_SNP [dm6]	C	T	5.636e^-4	0.946	UTR_3_PRIME scrt
3L	18057520	3L_18057520_SNP [dm3] 3L_18064420_SNP [dm6]	C	T	5.641e^-4	0.946	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15992615	3R_15992615_SNP [dm3] 3R_20166893_SNP [dm6]	C	A	5.643e^-4	0.946	INTERGENIC
3R	2285727	3R_2285727_SNP [dm3] 3R_6460005_SNP [dm6]	T	C	5.649e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8433931	2L_8433931_INS [dm3] 2L_8433931_INS [dm6]	T	TG	5.676e^-4	0.946	UPSTREAM grk DOWNSTREAM D12 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8372834	2L_8372834_SNP [dm3] 2L_8372834_SNP [dm6]	T	A	5.676e^-4	0.946	INTRON CG17292	TF binding site mE1_TFBS_HSA
2L	8372861	2L_8372861_SNP [dm3] 2L_8372861_SNP [dm6]	G	T	5.676e^-4	0.946	INTRON CG17292	TF binding site mE1_TFBS_HSA
3R	18531480	3R_18531480_SNP [dm3] 3R_22705758_SNP [dm6]	G	A	5.706e^-4	0.946	SPLICE_SITE_REGION CG13842 INTRON CG13842
2L	5109712	2L_5109712_SNP [dm3] 2L_5109712_SNP [dm6]	G	T	5.729e^-4	0.946	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25451217	3R_25451217_SNP [dm3] 3R_29625495_SNP [dm6]	G	A	5.738e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	6097787	2L_6097787_SNP [dm3] 2L_6097787_SNP [dm6]	G	A	5.747e^-4	0.946	SYNONYMOUS_CODING CG9175	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4091459	2L_4091459_SNP [dm3] 2L_4091459_SNP [dm6]	C	G	5.755e^-4	0.946	INTRON ed
2L	1509655	2L_1509655_SNP [dm3] 2L_1509655_SNP [dm6]	C	A	5.757e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3R	19307420	3R_19307420_SNP [dm3] 3R_23481698_SNP [dm6]	T	A	5.764e^-4	0.946	UPSTREAM Ir94f INTERGENIC
2L	11292394	2L_11292394_INS [dm3] 2L_11292394_INS [dm6]	A	AG	5.776e^-4	0.946	INTERGENIC
3L	12150095	3L_12150095_SNP [dm3] 3L_12156995_SNP [dm6]	G	T	5.792e^-4	0.946	DOWNSTREAM CG9760 & 1 other INTERGENIC
3L	7612048	3L_7612048_SNP [dm3] 3L_7618948_SNP [dm6]	A	C	5.797e^-4	0.946	INTRON CG33275
2L	17798532	2L_17798532_SNP [dm3] 2L_17798532_SNP [dm6]	G	A	5.799e^-4	0.946	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad
3L	2051953	3L_2051953_SNP [dm3] 3L_2051953_SNP [dm6]	G	T	5.802e^-4	0.946	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	2500888	3R_2500888_SNP [dm3] 3R_6675166_SNP [dm6]	A	G	5.808e^-4	0.946	INTRON lab	regulatory region FlyBase REDfly_CRMs
2L	12776114	2L_12776114_SNP [dm3] 2L_12776114_SNP [dm6]	T	A	5.815e^-4	0.946	INTERGENIC
3L	16510919	3L_16510919_SNP [dm3] 3L_16517819_SNP [dm6]	T	A	5.824e^-4	0.946	INTRON CG43373
3L	16510920	3L_16510920_SNP [dm3] 3L_16517820_SNP [dm6]	A	T	5.824e^-4	0.946	INTRON CG43373
3L	16510923	3L_16510923_SNP [dm3] 3L_16517823_SNP [dm6]	G	A	5.824e^-4	0.946	INTRON CG43373
3L	16510926	3L_16510926_SNP [dm3] 3L_16517826_SNP [dm6]	A	T	5.824e^-4	0.946	INTRON CG43373
3L	5861512	3L_5861512_SNP [dm3] 3L_5868412_SNP [dm6]	A	G	5.825e^-4	0.946	INTERGENIC
2R	15209122	2R_15209122_SNP [dm3] 2R_19321617_SNP [dm6]	T	C	5.841e^-4	0.946	INTRON Rgk1	TF binding site mE1_TFBS_inv
2L	6490998	2L_6490998_SNP [dm3] 2L_6490998_SNP [dm6]	T	C	5.855e^-4	0.946	UPSTREAM CG31638 & 1 other DOWNSTREAM epsilonCOP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	14951073	X_14951073_SNP [dm3] X_15057040_SNP [dm6]	T	C	5.855e^-4	0.946	SPLICE_SITE_REGION hiw INTRON hiw	TF binding site mE1_TFBS_chinmo
2R	8435171	2R_8435171_DEL [dm3] 2R_12547666_DEL [dm6]	TT	T	5.861e^-4	0.946	INTRON fra
3L	9732032	3L_9732032_SNP [dm3] 3L_9738932_SNP [dm6]	G	A	5.862e^-4	0.946	SYNONYMOUS_CODING CG42268	TF binding site mE1_TFBS_cad
3L	2293179	3L_2293179_SNP [dm3] 3L_2293179_SNP [dm6]	A	C	5.865e^-4	0.946	INTRON MsR2
2L	18404137	2L_18404137_SNP [dm3] 2L_18404137_SNP [dm6]	A	G	5.868e^-4	0.946	INTRON CR44487
2L	15170798	2L_15170798_SNP [dm3] 2L_15170798_SNP [dm6]	G	A	5.868e^-4	0.946	INTRON CG4168
3L	8607367	3L_8607367_SNP [dm3] 3L_8614267_SNP [dm6]	G	T	5.872e^-4	0.946	INTRON CG6282
3R	9365938	3R_9365938_SNP [dm3] 3R_13540216_SNP [dm6]	C	A	5.880e^-4	0.946	INTERGENIC
3L	4852191	3L_4852191_SNP [dm3] 3L_4852191_SNP [dm6]	T	G	5.882e^-4	0.946	SYNONYMOUS_CODING CG32237
3R	10849873	3R_10849873_SNP [dm3] 3R_15024151_SNP [dm6]	T	G	5.898e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	24138315	3R_24138315_SNP [dm3] 3R_28312593_SNP [dm6]	C	T	5.904e^-4	0.946	INTERGENIC
2L	9445495	2L_9445495_SNP [dm3] 2L_9445495_SNP [dm6]	T	C	5.916e^-4	0.946	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	3524220	X_3524220_INS [dm3] X_3630187_INS [dm6]	C	CTTACCATCTATC...	5.919e^-4	0.946	INTRON AstA-R1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6407297	2L_6407297_SNP [dm3] 2L_6407297_SNP [dm6]	T	C	5.923e^-4	0.946	INTRON CG42368
X	8375342	X_8375342_SNP [dm3] X_8481309_SNP [dm6]	A	T	5.924e^-4	0.946	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375345	X_8375345_SNP [dm3] X_8481312_SNP [dm6]	C	T	5.924e^-4	0.946	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
3R	4456754	3R_4456754_SNP [dm3] 3R_8631032_SNP [dm6]	A	T	5.945e^-4	0.946	INTERGENIC

By genomic position
Variant impact
Gene name

Microbiota_OTU160 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results