DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.511e^-13)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

6086 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	22958910	3R_22958910_SNP [dm3] 3R_27133188_SNP [dm6]	C	A	3.748e^-15	6.972e^-9	INTRON CG6051
2R	10325701	2R_10325701_SNP [dm3] 2R_14438196_SNP [dm6]	G	A	8.268e^-15	7.692e^-9	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10325695	2R_10325695_SNP [dm3] 2R_14438190_SNP [dm6]	T	A	1.428e^-14	8.853e^-9	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14356281	2R_14356281_SNP [dm3] 2R_18468776_SNP [dm6]	G	A	7.224e^-14	3.360e^-8	INTRON CG30116
2R	10325825	2R_10325825_SNP [dm3] 2R_14438320_SNP [dm6]	G	A	7.730e^-12	2.876e^-6	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	3495470	3L_3495470_SNP [dm3] 3L_3495470_SNP [dm6]	T	C	1.004e^-11	3.103e^-6	INTRON CG42324
3L	5894052	3L_5894052_SNP [dm3] 3L_5900952_SNP [dm6]	G	A	1.170e^-11	3.103e^-6	NON_SYNONYMOUS_CODING QC DOWNSTREAM CG32409	TF binding site mE1_TFBS_cad
2L	5788435	2L_5788435_SNP [dm3] 2L_5788435_SNP [dm6]	C	G	1.334e^-11	3.103e^-6	INTRON CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13076905	2L_13076905_SNP [dm3] 2L_13076905_SNP [dm6]	C	G	1.667e^-11	3.446e^-6	INTERGENIC
3L	3496821	3L_3496821_SNP [dm3] 3L_3496821_SNP [dm6]	G	T	2.327e^-11	4.330e^-6	INTRON CG42324
2R	17132532	2R_17132532_SNP [dm3] 2R_21245027_SNP [dm6]	A	T	4.436e^-11	7.503e^-6	INTRON ASPP	TF binding site BDTNP1_TFBS_prd
2R	17132455	2R_17132455_SNP [dm3] 2R_21244950_SNP [dm6]	C	G	5.718e^-11	8.865e^-6	INTRON ASPP	TF binding site BDTNP1_TFBS_prd
3L	3817734	3L_3817734_SNP [dm3] 3L_3817734_SNP [dm6]	A	G	8.157e^-11	1.167e^-5	UPSTREAM enc INTRON Scsalpha	TF binding site mE1_TFBS_sens
3L	1356011	3L_1356011_SNP [dm3] 3L_1356011_SNP [dm6]	G	A	4.342e^-10	5.770e^-5	INTRON Ptp61F	TF binding site mE1_TFBS_inv
2R	3687625	2R_3687625_SNP [dm3] 2R_7800120_SNP [dm6]	A	C	7.249e^-10	8.449e^-5	DOWNSTREAM Nop17l INTRON mus205	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3495875	3L_3495875_SNP [dm3] 3L_3495875_SNP [dm6]	G	A	7.482e^-10	8.449e^-5	INTRON CG42324
3R	22981837	3R_22981837_SNP [dm3] 3R_27156115_SNP [dm6]	A	G	7.932e^-10	8.449e^-5	INTRON Men-b
2R	3677687	2R_3677687_SNP [dm3] 2R_7790182_SNP [dm6]	C	T	8.175e^-10	8.449e^-5	UPSTREAM CG12824 DOWNSTREAM CG12825 INTERGENIC
2R	16689395	2R_16689395_SNP [dm3] 2R_20801890_SNP [dm6]	C	G	1.075e^-9	1.053e^-4	INTERGENIC
2R	3677701	2R_3677701_SNP [dm3] 2R_7790196_SNP [dm6]	C	A	1.152e^-9	1.071e^-4	UPSTREAM CG12824 DOWNSTREAM CG12825 INTERGENIC
3L	3494056	3L_3494056_SNP [dm3] 3L_3494056_SNP [dm6]	G	A	1.320e^-9	1.143e^-4	INTRON CG42324	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	20065216	3L_20065216_SNP [dm3] 3L_20072116_SNP [dm6]	C	A	1.568e^-9	1.143e^-4	INTRON sNPF-R
2R	3677708	2R_3677708_SNP [dm3] 2R_7790203_SNP [dm6]	C	G	1.663e^-9	1.143e^-4	UPSTREAM CG12824 DOWNSTREAM CG12825 INTERGENIC
3L	3493832	3L_3493832_SNP [dm3] 3L_3493832_SNP [dm6]	C	A	1.738e^-9	1.143e^-4	INTRON CG42324	TF binding site mE1_TFBS_inv
3L	10778787	3L_10778787_SNP [dm3] 3L_10785687_SNP [dm6]	G	A	1.776e^-9	1.143e^-4	DOWNSTREAM CR44544 INTERGENIC
3L	10786874	3L_10786874_SNP [dm3] 3L_10793774_SNP [dm6]	T	C	1.776e^-9	1.143e^-4	INTERGENIC	TF binding site mE1_TFBS_Trl
X	5211003	X_5211003_SNP [dm3] X_5316970_SNP [dm6]	T	C	1.776e^-9	1.143e^-4	NON_SYNONYMOUS_CODING CG15930 UPSTREAM Sas10	TF binding site mE1_TFBS_HSA
3L	16473582	3L_16473582_SNP [dm3] 3L_16480482_SNP [dm6]	G	C	1.812e^-9	1.143e^-4	INTRON CG33158 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3492230	3L_3492230_SNP [dm3] 3L_3492230_SNP [dm6]	T	G	1.828e^-9	1.143e^-4	INTRON CG42324
2L	1705201	2L_1705201_SNP [dm3] 2L_1705201_SNP [dm6]	T	G	1.844e^-9	1.143e^-4	UTR_5_PRIME cpb DOWNSTREAM chinmo INTRON cpb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA
3L	3494050	3L_3494050_SNP [dm3] 3L_3494050_SNP [dm6]	C	G	1.994e^-9	1.197e^-4	INTRON CG42324	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10114553	2L_10114553_SNP [dm3] 2L_10114553_SNP [dm6]	C	G	2.266e^-9	1.276e^-4	INTRON CG44153 & 1 other
3L	3494073	3L_3494073_DEL [dm3] 3L_3494073_DEL [dm6]	TTTGTTA	T	2.319e^-9	1.276e^-4	INTRON CG42324	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10787041	3L_10787041_SNP [dm3] 3L_10793941_SNP [dm6]	C	T	2.332e^-9	1.276e^-4	INTERGENIC
3L	3495213	3L_3495213_SNP [dm3] 3L_3495213_SNP [dm6]	A	C	2.441e^-9	1.298e^-4	INTRON CG42324
2L	12476821	2L_12476821_SNP [dm3] 2L_12476821_SNP [dm6]	T	A	2.572e^-9	1.329e^-4	INTRON bun
2L	12197299	2L_12197299_SNP [dm3] 2L_12197299_SNP [dm6]	T	A	3.389e^-9	1.682e^-4	INTRON aret	TF binding site mE1_TFBS_inv
2L	6955557	2L_6955557_SNP [dm3] 2L_6955557_SNP [dm6]	C	T	3.436e^-9	1.682e^-4	SYNONYMOUS_CODING CG13775 DOWNSTREAM SA	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3496841	3L_3496841_SNP [dm3] 3L_3496841_SNP [dm6]	T	A	3.881e^-9	1.851e^-4	INTRON CG42324
2R	18749420	2R_18749420_SNP [dm3] 2R_22861897_SNP [dm6]	G	A	4.772e^-9	2.220e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9412370	2L_9412370_SNP [dm3] 2L_9412370_SNP [dm6]	C	T	5.517e^-9	2.503e^-4	INTRON Shawl
2R	5868148	2R_5868148_SNP [dm3] 2R_9980643_SNP [dm6]	C	A	6.481e^-9	2.827e^-4	UTR_3_PRIME eve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10200111	2L_10200111_SNP [dm3] 2L_10200111_SNP [dm6]	A	G	6.534e^-9	2.827e^-4	SYNONYMOUS_CODING Ripalpha UPSTREAM Sur & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	18751259	2L_18751259_SNP [dm3] 2L_18751259_SNP [dm6]	G	A	6.841e^-9	2.893e^-4	INTERGENIC
3L	3496160	3L_3496160_SNP [dm3] 3L_3496160_SNP [dm6]	T	C	8.422e^-9	3.482e^-4	INTRON CG42324
X	18289521	X_18289521_SNP [dm3] X_18395488_SNP [dm6]	T	C	8.788e^-9	3.554e^-4	INTRON CG32549	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3497066	3L_3497066_SNP [dm3] 3L_3497066_SNP [dm6]	T	C	9.490e^-9	3.756e^-4	INTRON CG42324
3L	3494818	3L_3494818_SNP [dm3] 3L_3494818_SNP [dm6]	C	T	1.003e^-8	3.887e^-4	INTRON CG42324
3R	20314411	3R_20314411_SNP [dm3] 3R_24488689_SNP [dm6]	G	T	1.066e^-8	4.048e^-4	DOWNSTREAM mir-1017 INTRON nAChRalpha2
3L	2602466	3L_2602466_SNP [dm3] 3L_2602466_SNP [dm6]	G	A	1.104e^-8	4.109e^-4	SYNONYMOUS_CODING Pxn DOWNSTREAM CG16986	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	14504402	X_14504402_SNP [dm3] X_14610369_SNP [dm6]	G	A	1.152e^-8	4.204e^-4	INTRON NetA	TF binding site mE1_TFBS_cad
2L	4854057	2L_4854057_SNP [dm3] 2L_4854057_SNP [dm6]	A	C	1.187e^-8	4.248e^-4	INTRON pog
2L	13039818	2L_13039818_SNP [dm3] 2L_13039818_SNP [dm6]	A	C	1.325e^-8	4.650e^-4	INTRON CG9932
2L	12174887	2L_12174887_SNP [dm3] 2L_12174887_SNP [dm6]	T	G	1.502e^-8	5.175e^-4	UPSTREAM aret & 1 other DOWNSTREAM crok & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
X	6883570	X_6883570_SNP [dm3] X_6989537_SNP [dm6]	G	A	1.720e^-8	5.817e^-4	INTRON ogre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	13559605	2L_13559605_SNP [dm3] 2L_13559605_SNP [dm6]	G	A	1.863e^-8	6.190e^-4	INTRON kuz
3L	5343108	3L_5343108_SNP [dm3] 3L_5350008_SNP [dm6]	A	C	2.306e^-8	7.526e^-4	INTRON lama
2L	9485911	2L_9485911_SNP [dm3] 2L_9485911_SNP [dm6]	C	T	2.510e^-8	8.052e^-4	INTERGENIC
3L	5502457	3L_5502457_SNP [dm3] 3L_5509357_SNP [dm6]	T	G	2.594e^-8	8.178e^-4	INTRON CG34342	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1355941	3L_1355941_SNP [dm3] 3L_1355941_SNP [dm6]	C	T	2.704e^-8	8.384e^-4	INTRON Ptp61F	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14282663	2R_14282663_SNP [dm3] 2R_18395158_SNP [dm6]	G	A	2.883e^-8	8.773e^-4	SYNONYMOUS_CODING Idgf5
2L	3910842	2L_3910842_SNP [dm3] 2L_3910842_SNP [dm6]	C	T	2.932e^-8	8.773e^-4	DOWNSTREAM CG31773 INTRON fred
2R	6744568	2R_6744568_SNP [dm3] 2R_10857063_SNP [dm6]	C	T	3.013e^-8	8.773e^-4	INTRON CG30015
2L	6956593	2L_6956593_SNP [dm3] 2L_6956593_SNP [dm6]	C	T	3.018e^-8	8.773e^-4	UPSTREAM CG3430 & 1 other INTRON CG13775	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
X	6882779	X_6882779_SNP [dm3] X_6988746_SNP [dm6]	G	A	3.067e^-8	8.779e^-4	INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	4523206	2L_4523206_SNP [dm3] 2L_4523206_SNP [dm6]	C	T	3.206e^-8	9.038e^-4	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18387290	3L_18387290_INS [dm3] 3L_18394190_INS [dm6]	A	AGGGCC	3.291e^-8	9.140e^-4	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14149696	2L_14149696_SNP [dm3] 2L_14149696_SNP [dm6]	C	T	3.714e^-8	0.001	INTRON CG17341
2L	6955793	2L_6955793_SNP [dm3] 2L_6955793_SNP [dm6]	C	T	3.793e^-8	0.001	NON_SYNONYMOUS_CODING CG13775	TF binding site mE1_TFBS_sens
2L	6957085	2L_6957085_SNP [dm3] 2L_6957085_SNP [dm6]	C	T	3.793e^-8	0.001	START_GAINED CG3430 UTR_5_PRIME CG3430 UPSTREAM CG13775	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	4520995	2L_4520995_SNP [dm3] 2L_4520995_SNP [dm6]	T	C	3.927e^-8	0.001	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18475154	2L_18475154_SNP [dm3] 2L_18475154_SNP [dm6]	C	T	4.554e^-8	0.001	SPLICE_SITE_REGION CG10283 SYNONYMOUS_CODING CG10283	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	18475175	2L_18475175_SNP [dm3] 2L_18475175_SNP [dm6]	G	T	4.554e^-8	0.001	SYNONYMOUS_CODING CG10283	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	6956327	2L_6956327_SNP [dm3] 2L_6956327_SNP [dm6]	C	T	5.000e^-8	0.001	UTR_5_PRIME CG13775 UPSTREAM CG3430 INTRON CG13775	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
2L	5316869	2L_5316869_SNP [dm3] 2L_5316869_SNP [dm6]	G	C	5.185e^-8	0.001	UTR_3_PRIME Ncoa6	TF binding site mE1_TFBS_cad
2R	11401143	2R_11401143_SNP [dm3] 2R_15513638_SNP [dm6]	T	C	5.202e^-8	0.001	INTRON GalNAc-T1
2L	4532444	2L_4532444_SNP [dm3] 2L_4532444_SNP [dm6]	T	A	5.204e^-8	0.001	INTRON dp
2R	14148023	2R_14148023_SNP [dm3] 2R_18260518_SNP [dm6]	T	A	5.304e^-8	0.001	INTERGENIC
2R	15949601	2R_15949601_SNP [dm3] 2R_20062096_SNP [dm6]	A	G	5.691e^-8	0.001	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10321738	2R_10321738_SNP [dm3] 2R_14434233_SNP [dm6]	A	C	6.142e^-8	0.001	UPSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	22989209	3R_22989209_SNP [dm3] 3R_27163487_SNP [dm6]	C	T	6.159e^-8	0.001	DOWNSTREAM CG5909 INTRON ppk31
2L	9409270	2L_9409270_SNP [dm3] 2L_9409270_SNP [dm6]	G	A	6.308e^-8	0.001	INTRON Shawl
2R	20252047	2R_20252047_INS [dm3] 2R_24364524_INS [dm6]	C	CAAAAC	6.464e^-8	0.001	INTRON bs & 1 other	TF binding site mE1_TFBS_cad
3L	3513309	3L_3513309_SNP [dm3] 3L_3513309_SNP [dm6]	T	G	6.704e^-8	0.001	UPSTREAM ImpE2 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11750561	2R_11750561_SNP [dm3] 2R_15863056_SNP [dm6]	T	G	6.793e^-8	0.001	UPSTREAM Gpo-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11577895	3L_11577895_SNP [dm3] 3L_11584795_SNP [dm6]	C	T	7.283e^-8	0.002	SYNONYMOUS_CODING rt UPSTREAM CG32086	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	718924	3L_718924_SNP [dm3] 3L_718924_SNP [dm6]	T	C	7.669e^-8	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13118713	2L_13118713_SNP [dm3] 2L_13118713_SNP [dm6]	A	G	7.854e^-8	0.002	UPSTREAM CG43050 DOWNSTREAM CR44198 INTERGENIC
2R	18986084	2R_18986084_SNP [dm3] 2R_23098561_SNP [dm6]	C	T	7.947e^-8	0.002	INTERGENIC
2L	22069499	2L_22069499_SNP [dm3] 2L_22069499_SNP [dm6]	T	G	7.982e^-8	0.002	INTERGENIC	TF binding site mE1_TFBS_sens
3R	15122404	3R_15122404_SNP [dm3] 3R_19296682_SNP [dm6]	A	C	8.467e^-8	0.002	DOWNSTREAM CG44174 INTERGENIC
X	6282812	X_6282812_SNP [dm3] X_6388779_SNP [dm6]	A	G	8.644e^-8	0.002	INTERGENIC
2L	22121076	2L_22121076_SNP [dm3] 2L_22121076_SNP [dm6]	G	A	9.049e^-8	0.002	UPSTREAM CG3651 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10765122	3L_10765122_SNP [dm3] 3L_10772022_SNP [dm6]	G	T	9.233e^-8	0.002	UTR_5_PRIME CG43245	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9406683	2L_9406683_SNP [dm3] 2L_9406683_SNP [dm6]	A	C	9.485e^-8	0.002	INTRON Shawl
3R	26169320	3R_26169320_SNP [dm3] 3R_30343598_SNP [dm6]	C	A	9.521e^-8	0.002	INTRON hdc
3R	22003398	3R_22003398_SNP [dm3] 3R_26177676_SNP [dm6]	A	G	9.672e^-8	0.002	INTRON CG31323
3R	8236513	3R_8236513_SNP [dm3] 3R_12410791_SNP [dm6]	A	T	9.915e^-8	0.002	SYNONYMOUS_CODING CG5196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7907847	2L_7907847_SNP [dm3] 2L_7907847_SNP [dm6]	T	A	1.035e^-7	0.002	INTRON Snoo
2L	13354828	2L_13354828_SNP [dm3] 2L_13354828_SNP [dm6]	T	C	1.040e^-7	0.002	UTR_5_PRIME CG9395 INTRON CG9395	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	8225131	2L_8225131_SNP [dm3] 2L_8225131_SNP [dm6]	A	G	1.088e^-7	0.002	SYNONYMOUS_CODING Pvr
2L	4138008	2L_4138008_SNP [dm3] 2L_4138008_SNP [dm6]	C	A	1.099e^-7	0.002	INTERGENIC
2R	3989333	2R_3989333_SNP [dm3] 2R_8101828_SNP [dm6]	C	G	1.118e^-7	0.002	NON_SYNONYMOUS_CODING CG11210 DOWNSTREAM Cul4
2L	9742397	2L_9742397_SNP [dm3] 2L_9742397_SNP [dm6]	T	C	1.126e^-7	0.002	SYNONYMOUS_CODING Nckx30C	TF binding site mE1_TFBS_chinmo
X	1620243	X_1620243_SNP [dm3] X_1726210_SNP [dm6]	C	T	1.188e^-7	0.002	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1620247	X_1620247_DEL [dm3] X_1726214_DEL [dm6]	CC	C	1.188e^-7	0.002	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6282814	X_6282814_SNP [dm3] X_6388781_SNP [dm6]	T	G	1.215e^-7	0.002	INTERGENIC
2L	19898930	2L_19898930_SNP [dm3] 2L_19898930_SNP [dm6]	C	T	1.250e^-7	0.002	INTRON sick
2R	10327816	2R_10327816_SNP [dm3] 2R_14440311_SNP [dm6]	A	G	1.257e^-7	0.002	INTRON Oaz
2L	5919282	2L_5919282_SNP [dm3] 2L_5919282_SNP [dm6]	T	C	1.322e^-7	0.002	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad
3L	10783219	3L_10783219_DEL [dm3] 3L_10790119_DEL [dm6]	CTTTTCAAGCCC...	C	1.348e^-7	0.002	DOWNSTREAM CR44545 INTERGENIC
2R	12017825	2R_12017825_SNP [dm3] 2R_16130320_SNP [dm6]	C	T	1.376e^-7	0.002	INTRON spin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	10152172	2R_10152172_SNP [dm3] 2R_14264667_SNP [dm6]	T	C	1.510e^-7	0.002	INTRON CG8547	TF binding site mE1_TFBS_cad
2L	5310018	2L_5310018_SNP [dm3] 2L_5310018_SNP [dm6]	G	A	1.522e^-7	0.002	UTR_3_PRIME vri
2L	18761773	2L_18761773_SNP [dm3] 2L_18761773_SNP [dm6]	G	T	1.540e^-7	0.002	INTERGENIC
2R	16808788	2R_16808788_SNP [dm3] 2R_20921283_SNP [dm6]	A	G	1.559e^-7	0.002	INTRON Rx
2R	16808801	2R_16808801_SNP [dm3] 2R_20921296_SNP [dm6]	A	G	1.559e^-7	0.002	INTRON Rx
X	13613137	X_13613137_SNP [dm3] X_13719104_SNP [dm6]	T	A	1.584e^-7	0.002	UTR_3_PRIME CG9941 UPSTREAM CG9940	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10783176	3L_10783176_SNP [dm3] 3L_10790076_SNP [dm6]	G	C	1.585e^-7	0.002	DOWNSTREAM CR44545 INTERGENIC
2L	13959947	2L_13959947_SNP [dm3] 2L_13959947_SNP [dm6]	C	T	1.606e^-7	0.002	INTRON NimA
3R	20319939	3R_20319939_SNP [dm3] 3R_24494217_SNP [dm6]	C	T	1.684e^-7	0.003	INTERGENIC
3L	3494469	3L_3494469_SNP [dm3] 3L_3494469_SNP [dm6]	A	G	1.685e^-7	0.003	INTRON CG42324	TF binding site mE1_TFBS_inv
2L	22135851	2L_22135851_INS [dm3] 2L_22135851_INS [dm6]	C	CA	1.689e^-7	0.003	INTRON CG42748	transposable element FlyBase
X	1620377	X_1620377_SNP [dm3] X_1726344_SNP [dm6]	T	C	1.691e^-7	0.003	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22004078	3R_22004078_SNP [dm3] 3R_26178356_SNP [dm6]	A	G	1.772e^-7	0.003	INTRON CG31323
2L	19438250	2L_19438250_SNP [dm3] 2L_19438250_SNP [dm6]	C	T	1.867e^-7	0.003	INTRON CG10237
2L	19438454	2L_19438454_SNP [dm3] 2L_19438454_SNP [dm6]	C	A	1.867e^-7	0.003	START_GAINED CG10237 UTR_5_PRIME CG10237 INTRON CG10237
2L	19714418	2L_19714418_SNP [dm3] 2L_19714418_SNP [dm6]	A	G	1.870e^-7	0.003	INTRON Lar
2R	4706996	2R_4706996_SNP [dm3] 2R_8819491_SNP [dm6]	G	A	1.880e^-7	0.003	INTRON sns	TF binding site mE1_TFBS_chinmo
3L	20078602	3L_20078602_SNP [dm3] 3L_20085502_SNP [dm6]	G	A	1.935e^-7	0.003	INTRON sNPF-R
2L	6958296	2L_6958296_SNP [dm3] 2L_6958296_SNP [dm6]	G	A	1.978e^-7	0.003	DOWNSTREAM Atac1 INTRON CG3430
2L	22105544	2L_22105544_SNP [dm3] 2L_22105544_SNP [dm6]	C	A	2.038e^-7	0.003	UPSTREAM CG15219 INTERGENIC
2L	9413208	2L_9413208_SNP [dm3] 2L_9413208_SNP [dm6]	C	T	2.062e^-7	0.003	INTRON Shawl
2R	10321645	2R_10321645_DEL [dm3] 2R_14434140_DEL [dm6]	CTCTTATT	GA	2.094e^-7	0.003	UPSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	9411412	2L_9411412_SNP [dm3] 2L_9411412_SNP [dm6]	G	C	2.161e^-7	0.003	INTRON Shawl
2L	12596031	2L_12596031_SNP [dm3] 2L_12596031_SNP [dm6]	T	A	2.188e^-7	0.003	INTRON nub
2L	7642436	2L_7642436_SNP [dm3] 2L_7642436_SNP [dm6]	T	A	2.241e^-7	0.003	UTR_3_PRIME Slob	TF binding site mE1_TFBS_bab1
2L	7000535	2L_7000535_SNP [dm3] 2L_7000535_SNP [dm6]	G	A	2.300e^-7	0.003	INTRON uif
2L	22049994	2L_22049994_SNP [dm3] 2L_22049994_SNP [dm6]	A	T	2.351e^-7	0.003	INTERGENIC
2L	5496899	2L_5496899_SNP [dm3] 2L_5496899_SNP [dm6]	T	A	2.519e^-7	0.003	INTERGENIC
2R	14704645	2R_14704645_SNP [dm3] 2R_18817140_SNP [dm6]	T	G	2.558e^-7	0.003	UPSTREAM CG15096 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9412153	2L_9412153_SNP [dm3] 2L_9412153_SNP [dm6]	T	C	2.586e^-7	0.003	INTRON Shawl
2L	8776919	2L_8776919_SNP [dm3] 2L_8776919_SNP [dm6]	A	T	2.652e^-7	0.003	UPSTREAM CG9466 DOWNSTREAM CG9468 INTERGENIC	transposable element FlyBase
3L	8958083	3L_8958083_SNP [dm3] 3L_8964983_SNP [dm6]	C	T	2.671e^-7	0.003	SYNONYMOUS_CODING CG5653 UPSTREAM CG5660
2R	10321640	2R_10321640_MNP [dm3] 2R_14434135_MNP [dm6]	CAC	GTT	2.689e^-7	0.003	UPSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	14504406	X_14504406_DEL [dm3] X_14610373_DEL [dm6]	TGGATAT	G	2.780e^-7	0.004	INTRON NetA	TF binding site mE1_TFBS_cad
2L	13085477	2L_13085477_INS [dm3] 2L_13085477_INS [dm6]	G	GAGGAGGA	2.781e^-7	0.004	INTERGENIC
X	6102377	X_6102377_SNP [dm3] X_6208344_SNP [dm6]	T	A	2.811e^-7	0.004	INTERGENIC
2L	22048719	2L_22048719_SNP [dm3] 2L_22048719_SNP [dm6]	T	A	2.977e^-7	0.004	INTERGENIC	transposable element FlyBase
X	18358032	X_18358032_SNP [dm3] X_18463999_SNP [dm6]	A	G	3.130e^-7	0.004	INTRON CG32547
2L	22055818	2L_22055818_SNP [dm3] 2L_22055818_SNP [dm6]	G	C	3.175e^-7	0.004	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5343638	3L_5343638_SNP [dm3] 3L_5350538_SNP [dm6]	G	T	3.260e^-7	0.004	INTRON lama
X	13682325	X_13682325_SNP [dm3] X_13788292_SNP [dm6]	C	G	3.260e^-7	0.004	INTRON inaE
2L	5496912	2L_5496912_SNP [dm3] 2L_5496912_SNP [dm6]	C	A	3.275e^-7	0.004	INTERGENIC
2L	9485973	2L_9485973_SNP [dm3] 2L_9485973_SNP [dm6]	T	A	3.287e^-7	0.004	INTERGENIC
2L	19915874	2L_19915874_SNP [dm3] 2L_19915874_SNP [dm6]	T	G	3.457e^-7	0.004	INTRON sick	TF binding site mE1_TFBS_bab1
2L	4353399	2L_4353399_SNP [dm3] 2L_4353399_SNP [dm6]	C	T	3.632e^-7	0.004	SYNONYMOUS_CODING CG15429 UTR_5_PRIME CG15429	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18252509	3L_18252509_SNP [dm3] 3L_18259409_SNP [dm6]	T	C	3.805e^-7	0.004	INTERGENIC
3R	26266085	3R_26266085_SNP [dm3] 3R_30440363_SNP [dm6]	C	T	3.907e^-7	0.004	INTRON CG15537
3R	26266087	3R_26266087_SNP [dm3] 3R_30440365_SNP [dm6]	G	A	3.907e^-7	0.004	INTRON CG15537
2R	16232246	2R_16232246_SNP [dm3] 2R_20344741_SNP [dm6]	C	T	3.917e^-7	0.004	SYNONYMOUS_CODING CG13870	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16954184	2R_16954184_SNP [dm3] 2R_21066679_SNP [dm6]	A	T	3.938e^-7	0.004	SYNONYMOUS_CODING Cht4	TF binding site mE1_TFBS_cad
2R	16954241	2R_16954241_SNP [dm3] 2R_21066736_SNP [dm6]	A	T	3.938e^-7	0.004	INTRON Cht4	TF binding site mE1_TFBS_cad
3R	17373096	3R_17373096_SNP [dm3] 3R_21547374_SNP [dm6]	C	T	3.974e^-7	0.005	INTERGENIC
3L	6507213	3L_6507213_SNP [dm3] 3L_6514113_SNP [dm6]	A	G	4.093e^-7	0.005	INTRON sfl
3L	6508301	3L_6508301_SNP [dm3] 3L_6515201_SNP [dm6]	A	G	4.093e^-7	0.005	INTRON sfl
2R	19390601	2R_19390601_INS [dm3] 2R_23503078_INS [dm6]	T	TCTTGTAT	4.146e^-7	0.005	UTR_5_PRIME CG13559	TF binding site mE1_TFBS_inv
2R	19390603	2R_19390603_DEL [dm3] 2R_23503080_DEL [dm6]	TACAA	T	4.146e^-7	0.005	UTR_5_PRIME CG13559	TF binding site mE1_TFBS_inv
2R	10322070	2R_10322070_SNP [dm3] 2R_14434565_SNP [dm6]	C	T	4.193e^-7	0.005	UPSTREAM CR45277 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	18289691	X_18289691_SNP [dm3] X_18395658_SNP [dm6]	G	T	4.474e^-7	0.005	INTRON CG32549
X	18290130	X_18290130_SNP [dm3] X_18396097_SNP [dm6]	C	A	4.474e^-7	0.005	INTRON CG32549
2R	9695728	2R_9695728_SNP [dm3] 2R_13808223_SNP [dm6]	C	G	4.652e^-7	0.005	INTRON stj
2L	10097739	2L_10097739_SNP [dm3] 2L_10097739_SNP [dm6]	C	A	4.743e^-7	0.005	INTRON CG34109 & 1 other
3L	10479684	3L_10479684_SNP [dm3] 3L_10486584_SNP [dm6]	G	A	4.806e^-7	0.005	INTRON A2bp1
X	18289474	X_18289474_SNP [dm3] X_18395441_SNP [dm6]	T	A	4.828e^-7	0.005	INTRON CG32549	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	18290261	X_18290261_SNP [dm3] X_18396228_SNP [dm6]	T	A	4.828e^-7	0.005	INTRON CG32549	TF binding site mE1_TFBS_cad
3R	16643279	3R_16643279_SNP [dm3] 3R_20817557_SNP [dm6]	C	T	4.838e^-7	0.005	SYNONYMOUS_CODING CG17270
3L	2096916	3L_2096916_SNP [dm3] 3L_2096916_SNP [dm6]	C	T	4.878e^-7	0.005	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad
2L	20632947	2L_20632947_SNP [dm3] 2L_20632947_SNP [dm6]	A	G	4.898e^-7	0.005	INTERGENIC
2R	18739383	2R_18739383_SNP [dm3] 2R_22851860_SNP [dm6]	T	A	5.066e^-7	0.005	NON_SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19028935	X_19028935_SNP [dm3] X_19134902_SNP [dm6]	C	T	5.082e^-7	0.005	DOWNSTREAM Obp18a INTERGENIC
2R	10321690	2R_10321690_SNP [dm3] 2R_14434185_SNP [dm6]	T	A	5.141e^-7	0.005	UPSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10321692	2R_10321692_DEL [dm3] 2R_14434187_DEL [dm6]	AAA	A	5.141e^-7	0.005	UPSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10321697	2R_10321697_MNP [dm3] 2R_14434192_MNP [dm6]	TAA	CTT	5.141e^-7	0.005	UPSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10321701	2R_10321701_SNP [dm3] 2R_14434196_SNP [dm6]	C	T	5.141e^-7	0.005	UPSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10321707	2R_10321707_SNP [dm3] 2R_14434202_SNP [dm6]	T	A	5.141e^-7	0.005	UPSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10321728	2R_10321728_SNP [dm3] 2R_14434223_SNP [dm6]	G	A	5.141e^-7	0.005	UPSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10321740	2R_10321740_SNP [dm3] 2R_14434235_SNP [dm6]	T	A	5.141e^-7	0.005	UPSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10321742	2R_10321742_SNP [dm3] 2R_14434237_SNP [dm6]	A	T	5.141e^-7	0.005	UPSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10321747	2R_10321747_SNP [dm3] 2R_14434242_SNP [dm6]	G	A	5.141e^-7	0.005	UPSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10321749	2R_10321749_SNP [dm3] 2R_14434244_SNP [dm6]	C	T	5.141e^-7	0.005	UPSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10321750	2R_10321750_SNP [dm3] 2R_14434245_SNP [dm6]	A	G	5.141e^-7	0.005	UPSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10321788	2R_10321788_SNP [dm3] 2R_14434283_SNP [dm6]	C	T	5.141e^-7	0.005	UPSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	9979880	2R_9979880_SNP [dm3] 2R_14092375_SNP [dm6]	T	C	5.141e^-7	0.005	START_GAINED Prosap UTR_5_PRIME Prosap DOWNSTREAM CG42288
2L	5900770	2L_5900770_SNP [dm3] 2L_5900770_SNP [dm6]	A	G	5.229e^-7	0.005	UPSTREAM CR44579 INTERGENIC
2L	4138028	2L_4138028_SNP [dm3] 2L_4138028_SNP [dm6]	T	C	5.238e^-7	0.005	INTERGENIC
2R	9411960	2R_9411960_DEL [dm3] 2R_13524455_DEL [dm6]	TTTGCATAGCTCGACTTATT...	T	5.257e^-7	0.005	UPSTREAM CG13332 INTRON Vmat
X	12058828	X_12058828_SNP [dm3] X_12164795_SNP [dm6]	G	C	5.305e^-7	0.005	INTRON Ten-a
X	12058842	X_12058842_SNP [dm3] X_12164809_SNP [dm6]	A	T	5.305e^-7	0.005	INTRON Ten-a
X	12058875	X_12058875_SNP [dm3] X_12164842_SNP [dm6]	A	T	5.305e^-7	0.005	INTRON Ten-a
3L	18387293	3L_18387293_SNP [dm3] 3L_18394193_SNP [dm6]	G	T	5.384e^-7	0.005	INTERGENIC	TF binding site mE1_TFBS_cad
3R	5770045	3R_5770045_SNP [dm3] 3R_9944323_SNP [dm6]	C	G	5.497e^-7	0.005	UTR_3_PRIME Glut4EF INTRON Glut4EF
3R	20888030	3R_20888030_SNP [dm3] 3R_25062308_SNP [dm6]	C	T	5.646e^-7	0.005	INTRON Unc-13-4B
3R	20888053	3R_20888053_SNP [dm3] 3R_25062331_SNP [dm6]	T	C	5.646e^-7	0.005	INTRON Unc-13-4B
2L	6272902	2L_6272902_SNP [dm3] 2L_6272902_SNP [dm6]	A	C	5.680e^-7	0.005	NON_SYNONYMOUS_CODING Ddr
2R	10152160	2R_10152160_SNP [dm3] 2R_14264655_SNP [dm6]	T	A	5.787e^-7	0.005	INTRON CG8547	TF binding site mE1_TFBS_cad
2R	10321731	2R_10321731_SNP [dm3] 2R_14434226_SNP [dm6]	T	C	5.847e^-7	0.005	UPSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	25754885	3R_25754885_SNP [dm3] 3R_29929163_SNP [dm6]	C	T	5.999e^-7	0.005	SYNONYMOUS_CODING CG31202 DOWNSTREAM CG15522
2R	14149007	2R_14149007_INS [dm3] 2R_18261502_INS [dm6]	G	AA	6.029e^-7	0.005	INTERGENIC
2R	14149259	2R_14149259_SNP [dm3] 2R_18261754_SNP [dm6]	C	T	6.029e^-7	0.005	INTERGENIC
3L	3440757	3L_3440757_SNP [dm3] 3L_3440757_SNP [dm6]	C	A	6.029e^-7	0.005	INTRON eIF5B	TF binding site mE1_TFBS_HSA
3R	22961588	3R_22961588_SNP [dm3] 3R_27135866_SNP [dm6]	G	T	6.029e^-7	0.005	INTRON CG6051	TF binding site mE1_TFBS_inv
3R	22961833	3R_22961833_SNP [dm3] 3R_27136111_SNP [dm6]	G	A	6.029e^-7	0.005	INTRON CG6051
3R	22963546	3R_22963546_SNP [dm3] 3R_27137824_SNP [dm6]	G	A	6.029e^-7	0.005	INTRON CG6051
3R	22963942	3R_22963942_SNP [dm3] 3R_27138220_SNP [dm6]	G	A	6.029e^-7	0.005	INTRON CG6051
3R	22974041	3R_22974041_SNP [dm3] 3R_27148319_SNP [dm6]	C	T	6.029e^-7	0.005	INTRON CG6051	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22978244	3R_22978244_SNP [dm3] 3R_27152522_SNP [dm6]	T	A	6.029e^-7	0.005	INTRON Men-b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22981826	3R_22981826_SNP [dm3] 3R_27156104_SNP [dm6]	G	A	6.029e^-7	0.005	INTRON Men-b
3R	22984364	3R_22984364_SNP [dm3] 3R_27158642_SNP [dm6]	C	T	6.029e^-7	0.005	SYNONYMOUS_CODING grass	TF binding site mE1_TFBS_chinmo
3R	22984778	3R_22984778_SNP [dm3] 3R_27159056_SNP [dm6]	C	T	6.029e^-7	0.005	SYNONYMOUS_CODING grass	TF binding site mE1_TFBS_cad
3R	22986283	3R_22986283_SNP [dm3] 3R_27160561_SNP [dm6]	A	T	6.029e^-7	0.005	UPSTREAM CG5909 DOWNSTREAM grass INTERGENIC
3R	22986291	3R_22986291_SNP [dm3] 3R_27160569_SNP [dm6]	T	G	6.029e^-7	0.005	UPSTREAM CG5909 DOWNSTREAM grass INTERGENIC
3R	22988237	3R_22988237_SNP [dm3] 3R_27162515_SNP [dm6]	G	A	6.029e^-7	0.005	SYNONYMOUS_CODING CG5909 UPSTREAM ppk31
3R	22988976	3R_22988976_SNP [dm3] 3R_27163254_SNP [dm6]	T	G	6.029e^-7	0.005	DOWNSTREAM CG5909 INTRON ppk31
2L	18469017	2L_18469017_SNP [dm3] 2L_18469017_SNP [dm6]	T	A	6.107e^-7	0.005	INTRON let-7-C	TF binding site mE1_TFBS_Trl
2L	5900726	2L_5900726_SNP [dm3] 2L_5900726_SNP [dm6]	T	A	6.126e^-7	0.005	UPSTREAM CR44579 INTERGENIC
2R	10322001	2R_10322001_SNP [dm3] 2R_14434496_SNP [dm6]	A	T	6.192e^-7	0.005	UPSTREAM CR45277 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10321822	2R_10321822_SNP [dm3] 2R_14434317_SNP [dm6]	T	A	6.221e^-7	0.005	UPSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10321832	2R_10321832_SNP [dm3] 2R_14434327_SNP [dm6]	C	T	6.221e^-7	0.005	UPSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	17410502	2R_17410502_SNP [dm3] 2R_21522997_SNP [dm6]	G	T	6.494e^-7	0.005	UTR_5_PRIME Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	17174811	2L_17174811_SNP [dm3] 2L_17174811_SNP [dm6]	C	G	6.496e^-7	0.005	UPSTREAM CR44394 DOWNSTREAM CG34169 INTERGENIC
2R	10321676	2R_10321676_SNP [dm3] 2R_14434171_SNP [dm6]	G	T	6.501e^-7	0.005	UPSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	9408945	2L_9408945_SNP [dm3] 2L_9408945_SNP [dm6]	T	A	6.512e^-7	0.005	INTRON Shawl
2L	14137420	2L_14137420_DEL [dm3] 2L_14137420_DEL [dm6]	CCCACACTACGGGCAC...	C	6.549e^-7	0.005	INTRON CG17341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17567785	2R_17567785_SNP [dm3] 2R_21680280_SNP [dm6]	G	T	6.589e^-7	0.005	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	1619138	X_1619138_SNP [dm3] X_1725105_SNP [dm6]	A	G	6.737e^-7	0.005	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	5382985	3L_5382985_SNP [dm3] 3L_5389885_SNP [dm6]	G	T	6.888e^-7	0.005	INTERGENIC
2R	16830193	2R_16830193_SNP [dm3] 2R_20942688_SNP [dm6]	T	G	6.903e^-7	0.005	INTERGENIC
2R	13154545	2R_13154545_SNP [dm3] 2R_17267040_SNP [dm6]	G	T	6.905e^-7	0.005	INTRON mbl	TF binding site BDTNP1_TFBS_z
3L	10584799	3L_10584799_DEL [dm3] 3L_10591699_DEL [dm6]	AA	A	7.256e^-7	0.006	UTR_3_PRIME A2bp1 DOWNSTREAM A2bp1
3R	22985600	3R_22985600_SNP [dm3] 3R_27159878_SNP [dm6]	T	C	7.477e^-7	0.006	DOWNSTREAM grass INTERGENIC
3L	3440777	3L_3440777_SNP [dm3] 3L_3440777_SNP [dm6]	G	A	7.636e^-7	0.006	INTRON eIF5B	TF binding site mE1_TFBS_HSA
X	8035999	X_8035999_SNP [dm3] X_8141966_SNP [dm6]	C	T	7.636e^-7	0.006	UTR_5_PRIME Smox DOWNSTREAM CG17982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
X	8585184	X_8585184_SNP [dm3] X_8691151_SNP [dm6]	C	T	7.636e^-7	0.006	NON_SYNONYMOUS_CODING Ogg1 UPSTREAM Ppt1 DOWNSTREAM CG11294	TF binding site mE1_TFBS_sens
3L	18406681	3L_18406681_SNP [dm3] 3L_18413581_SNP [dm6]	T	C	7.808e^-7	0.006	INTERGENIC
2R	13226215	2R_13226215_SNP [dm3] 2R_17338710_SNP [dm6]	A	C	7.897e^-7	0.006	INTRON mbl
2L	20561803	2L_20561803_SNP [dm3] 2L_20561803_SNP [dm6]	C	A	7.940e^-7	0.006	UPSTREAM CR45347 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	860625	2L_860625_SNP [dm3] 2L_860625_SNP [dm6]	C	T	7.968e^-7	0.006	INTRON CG13950	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	2903103	X_2903103_DEL [dm3] X_3009070_DEL [dm6]	AT	A	8.046e^-7	0.006	INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2903165	X_2903165_SNP [dm3] X_3009132_SNP [dm6]	C	A	8.046e^-7	0.006	INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	5868188	2R_5868188_SNP [dm3] 2R_9980683_SNP [dm6]	T	G	8.088e^-7	0.006	UTR_3_PRIME eve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17097464	X_17097464_SNP [dm3] X_17203431_SNP [dm6]	A	G	8.108e^-7	0.006	SYNONYMOUS_CODING CG5070 UPSTREAM CG8918
2R	15087110	2R_15087110_SNP [dm3] 2R_19199605_SNP [dm6]	C	A	8.265e^-7	0.006	INTRON hppy
2L	9406414	2L_9406414_SNP [dm3] 2L_9406414_SNP [dm6]	A	G	8.321e^-7	0.006	INTRON Shawl
2R	17567744	2R_17567744_SNP [dm3] 2R_21680239_SNP [dm6]	A	G	8.359e^-7	0.006	NON_SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7543921	2L_7543921_SNP [dm3] 2L_7543921_SNP [dm6]	C	T	8.440e^-7	0.006	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	19390609	2R_19390609_SNP [dm3] 2R_23503086_SNP [dm6]	C	T	8.500e^-7	0.006	UTR_5_PRIME CG13559
2L	9225675	2L_9225675_SNP [dm3] 2L_9225675_SNP [dm6]	T	A	8.517e^-7	0.006	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Kr
3L	3497406	3L_3497406_SNP [dm3] 3L_3497406_SNP [dm6]	A	G	8.637e^-7	0.006	INTRON CG42324
X	2898554	X_2898554_SNP [dm3] X_3004521_SNP [dm6]	G	C	8.653e^-7	0.006	INTRON kirre
3L	8455844	3L_8455844_SNP [dm3] 3L_8462744_SNP [dm6]	T	A	8.755e^-7	0.006	INTRON Gug	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	6689520	2R_6689520_SNP [dm3] 2R_10802015_SNP [dm6]	G	C	8.901e^-7	0.006	INTRON wde	transposable element FlyBase
2R	19390594	2R_19390594_SNP [dm3] 2R_23503071_SNP [dm6]	A	G	8.937e^-7	0.006	UTR_5_PRIME CG13559	TF binding site mE1_TFBS_inv
2R	14826724	2R_14826724_SNP [dm3] 2R_18939219_SNP [dm6]	T	A	9.021e^-7	0.006	INTRON sano
3L	3499124	3L_3499124_SNP [dm3] 3L_3499124_SNP [dm6]	T	C	9.021e^-7	0.006	INTRON CG42324
X	1689352	X_1689352_SNP [dm3] X_1795319_SNP [dm6]	T	A	9.395e^-7	0.007	INTRON CG42666
3R	21999683	3R_21999683_SNP [dm3] 3R_26173961_SNP [dm6]	A	T	9.455e^-7	0.007	INTRON CG31323
X	18291686	X_18291686_SNP [dm3] X_18397653_SNP [dm6]	T	G	9.494e^-7	0.007	INTRON CG32549	TF binding site mE1_TFBS_cad
2L	8758018	2L_8758018_SNP [dm3] 2L_8758018_SNP [dm6]	G	C	9.568e^-7	0.007	INTERGENIC
2L	8758020	2L_8758020_SNP [dm3] 2L_8758020_SNP [dm6]	A	G	9.568e^-7	0.007	INTERGENIC
2L	8758032	2L_8758032_SNP [dm3] 2L_8758032_SNP [dm6]	T	G	9.568e^-7	0.007	INTERGENIC
2L	860531	2L_860531_SNP [dm3] 2L_860531_SNP [dm6]	G	A	9.585e^-7	0.007	INTRON CG13950	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	5868166	2R_5868166_INS [dm3] 2R_9980661_INS [dm6]	C	CCC	9.835e^-7	0.007	UTR_3_PRIME eve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	504109	2L_504109_SNP [dm3] 2L_504109_SNP [dm6]	G	C	1.001e^-6	0.007	INTRON ush
X	11267803	X_11267803_SNP [dm3] X_11373770_SNP [dm6]	G	A	1.011e^-6	0.007	INTRON dlg1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	22062347	2L_22062347_SNP [dm3] 2L_22062347_SNP [dm6]	T	C	1.016e^-6	0.007	INTERGENIC
3L	3497434	3L_3497434_SNP [dm3] 3L_3497434_SNP [dm6]	T	G	1.030e^-6	0.007	INTRON CG42324
3R	13299134	3R_13299134_SNP [dm3] 3R_17473412_SNP [dm6]	G	T	1.053e^-6	0.007	DOWNSTREAM Dscam3 INTERGENIC
2L	1705290	2L_1705290_SNP [dm3] 2L_1705290_SNP [dm6]	G	T	1.061e^-6	0.007	DOWNSTREAM chinmo INTRON cpb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA
2R	20503496	2R_20503496_SNP [dm3] 2R_24615973_SNP [dm6]	A	C	1.071e^-6	0.007	UTR_3_PRIME CG13594 UPSTREAM CG4741
2R	20504397	2R_20504397_SNP [dm3] 2R_24616874_SNP [dm6]	T	G	1.071e^-6	0.007	INTRON CG13594
3L	3499303	3L_3499303_SNP [dm3] 3L_3499303_SNP [dm6]	G	C	1.084e^-6	0.007	INTRON CG42324
3R	8383583	3R_8383583_SNP [dm3] 3R_12557861_SNP [dm6]	G	A	1.102e^-6	0.007	INTRON Octbeta2R
2L	9931305	2L_9931305_SNP [dm3] 2L_9931305_SNP [dm6]	A	T	1.105e^-6	0.007	DOWNSTREAM CG42366 & 2 others INTERGENIC
3L	6295135	3L_6295135_SNP [dm3] 3L_6302035_SNP [dm6]	A	G	1.114e^-6	0.007	DOWNSTREAM CR45420 INTERGENIC
3L	3499107	3L_3499107_SNP [dm3] 3L_3499107_SNP [dm6]	A	T	1.129e^-6	0.007	INTRON CG42324
X	2903061	X_2903061_SNP [dm3] X_3009028_SNP [dm6]	C	T	1.138e^-6	0.007	INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14102851	2R_14102851_SNP [dm3] 2R_18215346_SNP [dm6]	T	C	1.147e^-6	0.007	INTERGENIC
2L	6597981	2L_6597981_SNP [dm3] 2L_6597981_SNP [dm6]	G	T	1.159e^-6	0.007	INTRON CG11319
2L	6597985	2L_6597985_SNP [dm3] 2L_6597985_SNP [dm6]	C	T	1.159e^-6	0.007	INTRON CG11319
3L	1914851	3L_1914851_SNP [dm3] 3L_1914851_SNP [dm6]	C	T	1.169e^-6	0.007	INTERGENIC
3R	22961304	3R_22961304_SNP [dm3] 3R_27135582_SNP [dm6]	G	A	1.173e^-6	0.007	INTRON CG6051	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	20184739	2R_20184739_SNP [dm3] 2R_24297216_SNP [dm6]	C	T	1.190e^-6	0.008	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16372129	2R_16372129_SNP [dm3] 2R_20484624_SNP [dm6]	T	C	1.200e^-6	0.008	INTERGENIC
3L	6552261	3L_6552261_SNP [dm3] 3L_6559161_SNP [dm6]	C	T	1.228e^-6	0.008	INTRON CG18769
2R	6081780	2R_6081780_DEL [dm3] 2R_10194275_DEL [dm6]	GG	T	1.263e^-6	0.008	INTERGENIC
X	6476862	X_6476862_SNP [dm3] X_6582829_SNP [dm6]	G	A	1.285e^-6	0.008	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19027707	X_19027707_SNP [dm3] X_19133674_SNP [dm6]	T	G	1.286e^-6	0.008	DOWNSTREAM CR45711 INTERGENIC
2L	10721552	2L_10721552_SNP [dm3] 2L_10721552_SNP [dm6]	G	A	1.287e^-6	0.008	INTERGENIC
2L	5496806	2L_5496806_SNP [dm3] 2L_5496806_SNP [dm6]	C	G	1.290e^-6	0.008	INTERGENIC
2L	22067123	2L_22067123_SNP [dm3] 2L_22067123_SNP [dm6]	C	A	1.305e^-6	0.008	EXON CR31700
2L	10200219	2L_10200219_SNP [dm3] 2L_10200219_SNP [dm6]	G	A	1.310e^-6	0.008	SYNONYMOUS_CODING Ripalpha UPSTREAM RpL7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3R	17649171	3R_17649171_SNP [dm3] 3R_21823449_SNP [dm6]	A	G	1.318e^-6	0.008	UPSTREAM CASK & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	17649194	3R_17649194_SNP [dm3] 3R_21823472_SNP [dm6]	A	T	1.318e^-6	0.008	UPSTREAM CASK & 1 other INTERGENIC
X	5903923	X_5903923_SNP [dm3] X_6009890_SNP [dm6]	T	A	1.320e^-6	0.008	INTRON mab-21
3R	22002747	3R_22002747_SNP [dm3] 3R_26177025_SNP [dm6]	C	A	1.325e^-6	0.008	INTRON CG31323
X	18812103	X_18812103_SNP [dm3] X_18918070_SNP [dm6]	T	C	1.332e^-6	0.008	INTERGENIC
3R	24953085	3R_24953085_SNP [dm3] 3R_29127363_SNP [dm6]	G	A	1.335e^-6	0.008	SYNONYMOUS_CODING CG11880	TF binding site mE1_TFBS_cad
2L	22155825	2L_22155825_SNP [dm3] 2L_22155825_SNP [dm6]	G	A	1.336e^-6	0.008	INTRON CG42748	TF binding site mE1_TFBS_HSA mE1_TFBS_sens transposable element FlyBase
2L	4354883	2L_4354883_SNP [dm3] 2L_4354883_SNP [dm6]	C	G	1.344e^-6	0.008	DOWNSTREAM CG15429 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	13613138	X_13613138_SNP [dm3] X_13719105_SNP [dm6]	C	T	1.353e^-6	0.008	UTR_3_PRIME CG9941 UPSTREAM CG9940	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11419731	2R_11419731_SNP [dm3] 2R_15532226_SNP [dm6]	A	G	1.366e^-6	0.008	UTR_5_PRIME Khc-73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	8039883	3L_8039883_SNP [dm3] 3L_8046783_SNP [dm6]	C	T	1.372e^-6	0.008	SYNONYMOUS_CODING nmo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15532300	2L_15532300_SNP [dm3] 2L_15532300_SNP [dm6]	C	T	1.386e^-6	0.008	INTERGENIC
3L	18256830	3L_18256830_SNP [dm3] 3L_18263730_SNP [dm6]	T	A	1.389e^-6	0.008	INTERGENIC
3L	18264351	3L_18264351_SNP [dm3] 3L_18271251_SNP [dm6]	C	T	1.389e^-6	0.008	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	9417278	2L_9417278_SNP [dm3] 2L_9417278_SNP [dm6]	A	T	1.400e^-6	0.008	INTRON Mco1	TF binding site BDTNP1_TFBS_da
2R	20010036	2R_20010036_SNP [dm3] 2R_24122513_SNP [dm6]	G	C	1.409e^-6	0.008	UTR_3_PRIME CG3257 DOWNSTREAM CG43775 & 2 others
2L	9412545	2L_9412545_SNP [dm3] 2L_9412545_SNP [dm6]	A	T	1.421e^-6	0.008	INTRON Shawl
2L	19912027	2L_19912027_SNP [dm3] 2L_19912027_SNP [dm6]	C	T	1.494e^-6	0.009	SYNONYMOUS_CODING TotF UPSTREAM CR43097 DOWNSTREAM Victoria INTRON sick	TF binding site mE1_TFBS_HSA
2L	9408911	2L_9408911_SNP [dm3] 2L_9408911_SNP [dm6]	G	C	1.497e^-6	0.009	INTRON Shawl
2L	9403738	2L_9403738_SNP [dm3] 2L_9403738_SNP [dm6]	A	G	1.497e^-6	0.009	INTRON Shawl
3R	6115107	3R_6115107_SNP [dm3] 3R_10289385_SNP [dm6]	T	A	1.509e^-6	0.009	INTRON CG43143	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16955386	2R_16955386_SNP [dm3] 2R_21067881_SNP [dm6]	C	A	1.520e^-6	0.009	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
2R	16955397	2R_16955397_SNP [dm3] 2R_21067892_SNP [dm6]	G	A	1.520e^-6	0.009	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
3R	22979324	3R_22979324_SNP [dm3] 3R_27153602_SNP [dm6]	A	C	1.524e^-6	0.009	INTRON Men-b	TF binding site BDTNP1_TFBS_prd
3R	4348621	3R_4348621_SNP [dm3] 3R_8522899_SNP [dm6]	A	T	1.540e^-6	0.009	NON_SYNONYMOUS_CODING CG31454
3R	26122270	3R_26122270_SNP [dm3] 3R_30296548_SNP [dm6]	C	T	1.543e^-6	0.009	INTRON hdc
2L	12633785	2L_12633785_DEL [dm3] 2L_12633785_DEL [dm6]	ATAT	A	1.546e^-6	0.009	INTRON Ref2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
X	6008757	X_6008757_SNP [dm3] X_6114724_SNP [dm6]	A	G	1.546e^-6	0.009	SYNONYMOUS_CODING Ca-alpha1T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13761076	2L_13761076_SNP [dm3] 2L_13761076_SNP [dm6]	T	C	1.558e^-6	0.009	INTRON TM9SF4
3R	22000782	3R_22000782_SNP [dm3] 3R_26175060_SNP [dm6]	C	G	1.563e^-6	0.009	INTRON CG31323
3R	22000976	3R_22000976_SNP [dm3] 3R_26175254_SNP [dm6]	G	T	1.563e^-6	0.009	INTRON CG31323
3R	22001161	3R_22001161_SNP [dm3] 3R_26175439_SNP [dm6]	T	C	1.563e^-6	0.009	INTRON CG31323
3R	22001162	3R_22001162_SNP [dm3] 3R_26175440_SNP [dm6]	C	T	1.563e^-6	0.009	INTRON CG31323
3R	22001449	3R_22001449_SNP [dm3] 3R_26175727_SNP [dm6]	T	C	1.563e^-6	0.009	INTRON CG31323
X	19027710	X_19027710_SNP [dm3] X_19133677_SNP [dm6]	G	A	1.563e^-6	0.009	DOWNSTREAM CR45711 INTERGENIC
X	19027712	X_19027712_SNP [dm3] X_19133679_SNP [dm6]	G	T	1.563e^-6	0.009	DOWNSTREAM CR45711 INTERGENIC
3L	18263671	3L_18263671_SNP [dm3] 3L_18270571_SNP [dm6]	C	T	1.574e^-6	0.009	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	12106002	2L_12106002_SNP [dm3] 2L_12106002_SNP [dm6]	C	A	1.592e^-6	0.009	NON_SYNONYMOUS_CODING Aats-thr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11405119	2R_11405119_SNP [dm3] 2R_15517614_SNP [dm6]	C	A	1.599e^-6	0.009	UTR_3_PRIME Khc-73 DOWNSTREAM Khc-73
3L	2611205	3L_2611205_SNP [dm3] 3L_2611205_SNP [dm6]	T	A	1.600e^-6	0.009	INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2611206	3L_2611206_SNP [dm3] 3L_2611206_SNP [dm6]	G	T	1.600e^-6	0.009	INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10325820	2R_10325820_SNP [dm3] 2R_14438315_SNP [dm6]	C	A	1.612e^-6	0.009	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	7874731	2L_7874731_SNP [dm3] 2L_7874731_SNP [dm6]	T	A	1.612e^-6	0.009	INTRON spz3
2L	19912006	2L_19912006_SNP [dm3] 2L_19912006_SNP [dm6]	T	C	1.615e^-6	0.009	SYNONYMOUS_CODING TotF UPSTREAM CR43097 DOWNSTREAM Victoria INTRON sick	TF binding site mE1_TFBS_HSA
2L	19915914	2L_19915914_SNP [dm3] 2L_19915914_SNP [dm6]	G	T	1.642e^-6	0.009	INTRON sick	TF binding site mE1_TFBS_bab1
2L	6970164	2L_6970164_SNP [dm3] 2L_6970164_SNP [dm6]	G	A	1.663e^-6	0.009	SYNONYMOUS_CODING snRNP-U1-70K	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13770536	2L_13770536_SNP [dm3] 2L_13770536_SNP [dm6]	C	T	1.681e^-6	0.009	UPSTREAM TM9SF4 INTRON TM9SF4
2R	11404384	2R_11404384_SNP [dm3] 2R_15516879_SNP [dm6]	A	T	1.696e^-6	0.009	UTR_3_PRIME Khc-73 DOWNSTREAM Khc-73
2R	6933393	2R_6933393_DEL [dm3] 2R_11045888_DEL [dm6]	GGAGCGCGTT	G	1.728e^-6	0.009	INTRON luna
2R	16876277	2R_16876277_SNP [dm3] 2R_20988772_SNP [dm6]	T	A	1.732e^-6	0.009	INTRON CG3216	TF binding site mE1_TFBS_cad
2L	22055452	2L_22055452_SNP [dm3] 2L_22055452_SNP [dm6]	A	C	1.776e^-6	0.009	INTERGENIC
2L	9417269	2L_9417269_SNP [dm3] 2L_9417269_SNP [dm6]	G	A	1.786e^-6	0.009	INTRON Mco1	TF binding site BDTNP1_TFBS_da
2L	10721572	2L_10721572_SNP [dm3] 2L_10721572_SNP [dm6]	A	G	1.803e^-6	0.009	INTERGENIC
2L	4960509	2L_4960509_SNP [dm3] 2L_4960509_SNP [dm6]	A	C	1.808e^-6	0.009	SYNONYMOUS_CODING CG34124	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6597992	2L_6597992_SNP [dm3] 2L_6597992_SNP [dm6]	G	A	1.869e^-6	0.01	INTRON CG11319
2L	10145149	2L_10145149_SNP [dm3] 2L_10145149_SNP [dm6]	A	G	1.879e^-6	0.01	UTR_5_PRIME CG4839 INTRON CG44153
2R	9432148	2R_9432148_SNP [dm3] 2R_13544643_SNP [dm6]	A	T	1.885e^-6	0.01	INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	15028669	2R_15028669_SNP [dm3] 2R_19141164_SNP [dm6]	T	G	1.901e^-6	0.01	UPSTREAM ena DOWNSTREAM CG15111 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D
2R	15028670	2R_15028670_SNP [dm3] 2R_19141165_SNP [dm6]	A	T	1.901e^-6	0.01	UPSTREAM ena DOWNSTREAM CG15111 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D
2L	22061444	2L_22061444_SNP [dm3] 2L_22061444_SNP [dm6]	T	C	1.905e^-6	0.01	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9259547	3R_9259547_SNP [dm3] 3R_13433825_SNP [dm6]	G	A	1.911e^-6	0.01	INTRON yrt	TF binding site BDTNP1_TFBS_dl
3R	22001292	3R_22001292_SNP [dm3] 3R_26175570_SNP [dm6]	T	C	1.916e^-6	0.01	INTRON CG31323
2L	7642524	2L_7642524_SNP [dm3] 2L_7642524_SNP [dm6]	G	A	1.925e^-6	0.01	UTR_3_PRIME Slob DOWNSTREAM Slob	TF binding site mE1_TFBS_bab1
3R	21997550	3R_21997550_SNP [dm3] 3R_26171828_SNP [dm6]	G	A	1.949e^-6	0.01	INTRON CG31323
3R	17662140	3R_17662140_SNP [dm3] 3R_21836418_SNP [dm6]	T	C	1.954e^-6	0.01	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19027998	X_19027998_SNP [dm3] X_19133965_SNP [dm6]	T	C	1.962e^-6	0.01	DOWNSTREAM CR45711 INTERGENIC
2L	9405334	2L_9405334_SNP [dm3] 2L_9405334_SNP [dm6]	C	T	1.963e^-6	0.01	INTRON Shawl
2L	9405370	2L_9405370_SNP [dm3] 2L_9405370_SNP [dm6]	A	T	1.963e^-6	0.01	INTRON Shawl
2L	4522075	2L_4522075_SNP [dm3] 2L_4522075_SNP [dm6]	G	A	1.969e^-6	0.01	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6081557	2R_6081557_SNP [dm3] 2R_10194052_SNP [dm6]	C	T	1.977e^-6	0.01	INTERGENIC
2L	9225749	2L_9225749_SNP [dm3] 2L_9225749_SNP [dm6]	G	T	1.980e^-6	0.01	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	14153970	2L_14153970_SNP [dm3] 2L_14153970_SNP [dm6]	G	A	1.981e^-6	0.01	INTRON CG17341
2L	14154019	2L_14154019_SNP [dm3] 2L_14154019_SNP [dm6]	T	A	1.981e^-6	0.01	INTRON CG17341
2L	14154451	2L_14154451_SNP [dm3] 2L_14154451_SNP [dm6]	G	C	1.981e^-6	0.01	INTRON CG17341
2L	14156253	2L_14156253_SNP [dm3] 2L_14156253_SNP [dm6]	C	A	1.981e^-6	0.01	INTRON CG17341
2L	14161335	2L_14161335_SNP [dm3] 2L_14161335_SNP [dm6]	G	T	1.981e^-6	0.01	NON_SYNONYMOUS_CODING CG43332 DOWNSTREAM CG17341	TF binding site mE1_TFBS_bab1 mE1_TFBS_sens mE1_TFBS_zfh1
2L	14161339	2L_14161339_SNP [dm3] 2L_14161339_SNP [dm6]	A	G	1.981e^-6	0.01	NON_SYNONYMOUS_CODING CG43332 DOWNSTREAM CG17341	TF binding site mE1_TFBS_bab1 mE1_TFBS_sens mE1_TFBS_zfh1
3L	3761162	3L_3761162_SNP [dm3] 3L_3761162_SNP [dm6]	C	G	1.989e^-6	0.01	INTRON CG32264
3L	3491861	3L_3491861_SNP [dm3] 3L_3491861_SNP [dm6]	C	T	1.990e^-6	0.01	INTRON CG42324
3R	17650074	3R_17650074_SNP [dm3] 3R_21824352_SNP [dm6]	A	T	1.998e^-6	0.01	DOWNSTREAM CR45632 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	13033948	2L_13033948_SNP [dm3] 2L_13033948_SNP [dm6]	C	T	2.000e^-6	0.01	INTRON CG9932
2L	9244884	2L_9244884_SNP [dm3] 2L_9244884_SNP [dm6]	G	A	2.002e^-6	0.01	INTRON tai
3L	3526821	3L_3526821_SNP [dm3] 3L_3526821_SNP [dm6]	C	T	2.007e^-6	0.01	INTRON Eip63E
3L	11578039	3L_11578039_SNP [dm3] 3L_11584939_SNP [dm6]	C	A	2.018e^-6	0.01	SYNONYMOUS_CODING rt UPSTREAM CG32086	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9980028	2R_9980028_SNP [dm3] 2R_14092523_SNP [dm6]	G	A	2.033e^-6	0.01	DOWNSTREAM CG42288 INTRON Prosap
2L	13715137	2L_13715137_SNP [dm3] 2L_13715137_SNP [dm6]	T	A	2.049e^-6	0.01	INTRON CG31814
3L	8964200	3L_8964200_SNP [dm3] 3L_8971100_SNP [dm6]	C	T	2.106e^-6	0.01	DOWNSTREAM pix INTRON CG5026
2L	14151649	2L_14151649_DEL [dm3] 2L_14151649_DEL [dm6]	AAAAACATTTTTTGACTTGT...	A	2.115e^-6	0.01	INTRON CG17341
2L	4853966	2L_4853966_INS [dm3] 2L_4853966_INS [dm6]	T	AGCACC	2.117e^-6	0.01	INTRON pog
2L	4853985	2L_4853985_SNP [dm3] 2L_4853985_SNP [dm6]	T	G	2.117e^-6	0.01	INTRON pog
2L	4854013	2L_4854013_SNP [dm3] 2L_4854013_SNP [dm6]	T	A	2.117e^-6	0.01	INTRON pog
2R	6082539	2R_6082539_SNP [dm3] 2R_10195034_SNP [dm6]	C	A	2.121e^-6	0.01	INTERGENIC
3R	22860824	3R_22860824_SNP [dm3] 3R_27035102_SNP [dm6]	A	C	2.129e^-6	0.01	INTRON RYa-R	TF binding site BDTNP1_TFBS_da
2L	1733604	2L_1733604_SNP [dm3] 2L_1733604_SNP [dm6]	A	T	2.140e^-6	0.01	INTRON CG17646
2L	1733610	2L_1733610_SNP [dm3] 2L_1733610_SNP [dm6]	T	G	2.140e^-6	0.01	INTRON CG17646
X	21303142	X_21303142_SNP [dm3] X_21432115_SNP [dm6]	T	A	2.152e^-6	0.01	SYNONYMOUS_CODING CG42343
2R	14282884	2R_14282884_SNP [dm3] 2R_18395379_SNP [dm6]	G	A	2.169e^-6	0.01	DOWNSTREAM Idgf5 INTERGENIC
X	1641311	X_1641311_DEL [dm3] X_1747278_DEL [dm6]	TGCCATCCAGT...	T	2.187e^-6	0.01	INTRON Scgdelta	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
2R	17358249	2R_17358249_SNP [dm3] 2R_21470744_SNP [dm6]	T	C	2.208e^-6	0.01	INTRON Sdc
3L	10157296	3L_10157296_SNP [dm3] 3L_10164196_SNP [dm6]	A	C	2.215e^-6	0.01	INTRON dpr10
2R	10302678	2R_10302678_SNP [dm3] 2R_14415173_SNP [dm6]	G	C	2.252e^-6	0.01	INTERGENIC
2L	14145487	2L_14145487_INS [dm3] 2L_14145487_INS [dm6]	T	TT	2.266e^-6	0.01	INTRON CG17341
3R	14259294	3R_14259294_SNP [dm3] 3R_18433572_SNP [dm6]	A	T	2.267e^-6	0.01	INTRON fru
X	3219679	X_3219679_SNP [dm3] X_3325646_SNP [dm6]	G	A	2.271e^-6	0.01	INTRON CR44886 & 1 other
3L	6062703	3L_6062703_SNP [dm3] 3L_6069603_SNP [dm6]	G	A	2.293e^-6	0.01	SYNONYMOUS_CODING CG42269	TF binding site mE1_TFBS_HSA
2L	10058637	2L_10058637_SNP [dm3] 2L_10058637_SNP [dm6]	C	T	2.295e^-6	0.01	SYNONYMOUS_CODING Pen	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9409177	2L_9409177_DEL [dm3] 2L_9409177_DEL [dm6]	GC	G	2.311e^-6	0.011	INTRON Shawl
3R	7167896	3R_7167896_SNP [dm3] 3R_11342174_SNP [dm6]	T	A	2.323e^-6	0.011	INTRON pros
3R	9981059	3R_9981059_SNP [dm3] 3R_14155337_SNP [dm6]	T	G	2.335e^-6	0.011	NON_SYNONYMOUS_CODING CG31533 UPSTREAM CR44215	TF binding site mE1_TFBS_sens
2L	7650047	2L_7650047_SNP [dm3] 2L_7650047_SNP [dm6]	T	C	2.338e^-6	0.011	INTRON Slob
X	15728953	X_15728953_INS [dm3] X_15834920_INS [dm6]	T	TACTATGT	2.345e^-6	0.011	UPSTREAM CG32582 & 1 other INTRON Chc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	7644667	2L_7644667_SNP [dm3] 2L_7644667_SNP [dm6]	A	G	2.346e^-6	0.011	SYNONYMOUS_CODING Slob UTR_3_PRIME Slob
3R	17901668	3R_17901668_SNP [dm3] 3R_22075946_SNP [dm6]	A	T	2.360e^-6	0.011	INTRON how
2L	20641769	2L_20641769_SNP [dm3] 2L_20641769_SNP [dm6]	G	C	2.370e^-6	0.011	UTR_3_PRIME Sfp38D DOWNSTREAM CG17470 & 1 other
3L	6548512	3L_6548512_SNP [dm3] 3L_6555412_SNP [dm6]	C	A	2.370e^-6	0.011	INTRON CG18769	TF binding site mE1_TFBS_inv
3L	6548513	3L_6548513_SNP [dm3] 3L_6555413_SNP [dm6]	A	C	2.370e^-6	0.011	INTRON CG18769	TF binding site mE1_TFBS_inv
3R	15122423	3R_15122423_SNP [dm3] 3R_19296701_SNP [dm6]	A	T	2.380e^-6	0.011	DOWNSTREAM CG44174 INTERGENIC
2L	22125389	2L_22125389_DEL [dm3] 2L_22125389_DEL [dm6]	ACATA	A	2.394e^-6	0.011	UTR_3_PRIME CycK & 1 other DOWNSTREAM CG3651	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14116088	2R_14116088_SNP [dm3] 2R_18228583_SNP [dm6]	C	T	2.428e^-6	0.011	EXON CR45310 & 1 other
2L	22112738	2L_22112738_SNP [dm3] 2L_22112738_SNP [dm6]	A	G	2.438e^-6	0.011	INTERGENIC	transposable element FlyBase
2L	18469028	2L_18469028_SNP [dm3] 2L_18469028_SNP [dm6]	C	T	2.442e^-6	0.011	INTRON let-7-C	TF binding site mE1_TFBS_Trl
2L	13033836	2L_13033836_SNP [dm3] 2L_13033836_SNP [dm6]	T	A	2.444e^-6	0.011	INTRON CG9932
X	18292698	X_18292698_SNP [dm3] X_18398665_SNP [dm6]	G	A	2.477e^-6	0.011	DOWNSTREAM CG34328 INTRON CG32549
3L	3930505	3L_3930505_SNP [dm3] 3L_3930505_SNP [dm6]	T	G	2.488e^-6	0.011	INTRON Eip63F-1
3R	20886860	3R_20886860_SNP [dm3] 3R_25061138_SNP [dm6]	T	A	2.494e^-6	0.011	INTRON Unc-13-4B	TF binding site mE1_TFBS_cad
3L	521971	3L_521971_SNP [dm3] 3L_521971_SNP [dm6]	A	T	2.564e^-6	0.011	INTRON klar
3L	11512416	3L_11512416_SNP [dm3] 3L_11519316_SNP [dm6]	A	G	2.569e^-6	0.011	SYNONYMOUS_CODING Fuca DOWNSTREAM CG7512
2L	8666511	2L_8666511_SNP [dm3] 2L_8666511_SNP [dm6]	C	G	2.570e^-6	0.011	NON_SYNONYMOUS_CODING Sema-1a UTR_3_PRIME Sema-1a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22001172	3R_22001172_SNP [dm3] 3R_26175450_SNP [dm6]	T	A	2.585e^-6	0.011	INTRON CG31323
3R	22001174	3R_22001174_SNP [dm3] 3R_26175452_SNP [dm6]	C	A	2.585e^-6	0.011	INTRON CG31323
3R	22001175	3R_22001175_SNP [dm3] 3R_26175453_SNP [dm6]	A	T	2.585e^-6	0.011	INTRON CG31323
3R	21972608	3R_21972608_SNP [dm3] 3R_26146886_SNP [dm6]	T	A	2.603e^-6	0.011	INTERGENIC
3L	4090874	3L_4090874_SNP [dm3] 3L_4090874_SNP [dm6]	G	T	2.617e^-6	0.011	UTR_3_PRIME CG14989
3L	8316882	3L_8316882_SNP [dm3] 3L_8323782_SNP [dm6]	C	A	2.643e^-6	0.011	INTERGENIC
3R	18603503	3R_18603503_SNP [dm3] 3R_22777781_SNP [dm6]	G	A	2.659e^-6	0.011	INTRON CG7029 EXON CR43654	TF binding site BDTNP1_TFBS_twi
2L	5901099	2L_5901099_SNP [dm3] 2L_5901099_SNP [dm6]	T	A	2.710e^-6	0.012	UPSTREAM CR44579 INTERGENIC
2L	5375613	2L_5375613_SNP [dm3] 2L_5375613_SNP [dm6]	G	A	2.728e^-6	0.012	INTERGENIC
2L	22061466	2L_22061466_SNP [dm3] 2L_22061466_SNP [dm6]	T	C	2.732e^-6	0.012	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14163423	2L_14163423_SNP [dm3] 2L_14163423_SNP [dm6]	C	A	2.749e^-6	0.012	UPSTREAM CG43332 DOWNSTREAM CG43333 INTERGENIC
3L	5891125	3L_5891125_SNP [dm3] 3L_5898025_SNP [dm6]	T	C	2.776e^-6	0.012	SYNONYMOUS_CODING CG5592 UPSTREAM Pole2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5891129	3L_5891129_SNP [dm3] 3L_5898029_SNP [dm6]	G	C	2.776e^-6	0.012	NON_SYNONYMOUS_CODING CG5592 UPSTREAM Pole2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	1704879	2L_1704879_SNP [dm3] 2L_1704879_SNP [dm6]	T	C	2.778e^-6	0.012	UPSTREAM cpb DOWNSTREAM chinmo INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA
3L	6552262	3L_6552262_SNP [dm3] 3L_6559162_SNP [dm6]	A	G	2.851e^-6	0.012	INTRON CG18769
2L	22116042	2L_22116042_SNP [dm3] 2L_22116042_SNP [dm6]	T	A	2.867e^-6	0.012	INTERGENIC	transposable element FlyBase
2L	19915883	2L_19915883_SNP [dm3] 2L_19915883_SNP [dm6]	A	T	2.950e^-6	0.012	INTRON sick	TF binding site mE1_TFBS_bab1
2R	15028578	2R_15028578_SNP [dm3] 2R_19141073_SNP [dm6]	C	A	2.953e^-6	0.012	UPSTREAM ena DOWNSTREAM CG15111 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	7193920	2L_7193920_SNP [dm3] 2L_7193920_SNP [dm6]	T	A	2.954e^-6	0.012	DOWNSTREAM CG4502 INTRON CG4497	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run
2L	8228033	2L_8228033_SNP [dm3] 2L_8228033_SNP [dm6]	T	G	2.957e^-6	0.012	INTRON Pvr
2R	13852510	2R_13852510_SNP [dm3] 2R_17965005_SNP [dm6]	A	C	2.985e^-6	0.012	INTERGENIC
X	1620302	X_1620302_SNP [dm3] X_1726269_SNP [dm6]	T	G	3.007e^-6	0.012	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1620470	X_1620470_SNP [dm3] X_1726437_SNP [dm6]	T	G	3.007e^-6	0.012	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	20488610	2R_20488610_SNP [dm3] 2R_24601087_SNP [dm6]	A	C	3.016e^-6	0.012	INTRON CG3548	TF binding site mE1_TFBS_chinmo
3L	10985506	3L_10985506_MNP [dm3] 3L_10992406_MNP [dm6]	TGT	CCA	3.039e^-6	0.012	INTRON klu
2R	9411994	2R_9411994_SNP [dm3] 2R_13524489_SNP [dm6]	T	A	3.116e^-6	0.013	UPSTREAM CG13332 INTRON Vmat
2R	9412013	2R_9412013_SNP [dm3] 2R_13524508_SNP [dm6]	T	C	3.116e^-6	0.013	UPSTREAM CG13332 INTRON Vmat
2L	22116044	2L_22116044_SNP [dm3] 2L_22116044_SNP [dm6]	T	A	3.162e^-6	0.013	INTERGENIC	transposable element FlyBase
2L	22061747	2L_22061747_SNP [dm3] 2L_22061747_SNP [dm6]	G	A	3.199e^-6	0.013	INTERGENIC	TF binding site mE1_TFBS_inv
2R	4680357	2R_4680357_SNP [dm3] 2R_8792852_SNP [dm6]	G	A	3.206e^-6	0.013	NON_SYNONYMOUS_CODING CG8746	TF binding site mE1_TFBS_cad
X	19202817	X_19202817_INS [dm3] X_19308784_INS [dm6]	A	ACATA	3.238e^-6	0.013	UPSTREAM CG8051 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20488308	3L_20488308_SNP [dm3] 3L_20495208_SNP [dm6]	T	G	3.249e^-6	0.013	UPSTREAM CG6020 & 1 other INTRON CG6020	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	8990717	3R_8990717_SNP [dm3] 3R_13164995_SNP [dm6]	G	A	3.273e^-6	0.013	INTERGENIC
2L	8046499	2L_8046499_SNP [dm3] 2L_8046499_SNP [dm6]	G	A	3.312e^-6	0.013	SYNONYMOUS_CODING CG7466
X	18291720	X_18291720_SNP [dm3] X_18397687_SNP [dm6]	C	A	3.319e^-6	0.013	INTRON CG32549	TF binding site mE1_TFBS_cad
2L	4695860	2L_4695860_SNP [dm3] 2L_4695860_SNP [dm6]	C	G	3.322e^-6	0.013	INTRON CG34351	TF binding site mE1_TFBS_cad
2L	4521957	2L_4521957_SNP [dm3] 2L_4521957_SNP [dm6]	G	A	3.388e^-6	0.013	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4524629	2L_4524629_SNP [dm3] 2L_4524629_SNP [dm6]	A	T	3.388e^-6	0.013	SPLICE_SITE_REGION dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4525608	2L_4525608_SNP [dm3] 2L_4525608_SNP [dm6]	G	C	3.388e^-6	0.013	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad
2L	4525680	2L_4525680_SNP [dm3] 2L_4525680_SNP [dm6]	A	G	3.388e^-6	0.013	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad
2L	4529583	2L_4529583_SNP [dm3] 2L_4529583_SNP [dm6]	G	A	3.388e^-6	0.013	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4529643	2L_4529643_SNP [dm3] 2L_4529643_SNP [dm6]	A	G	3.388e^-6	0.013	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8666589	2L_8666589_SNP [dm3] 2L_8666589_SNP [dm6]	A	G	3.388e^-6	0.013	SYNONYMOUS_CODING Sema-1a UTR_3_PRIME Sema-1a	TF binding site mE1_TFBS_cad
2L	14163540	2L_14163540_DEL [dm3] 2L_14163540_DEL [dm6]	TTTGCA	T	3.389e^-6	0.013	UTR_3_PRIME CG43333 UPSTREAM CG43332
2L	5788430	2L_5788430_SNP [dm3] 2L_5788430_SNP [dm6]	T	C	3.396e^-6	0.013	INTRON CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12512918	2R_12512918_SNP [dm3] 2R_16625413_SNP [dm6]	C	T	3.458e^-6	0.014	UTR_3_PRIME Alk DOWNSTREAM CG5065 & 1 other
2L	1704866	2L_1704866_SNP [dm3] 2L_1704866_SNP [dm6]	G	A	3.470e^-6	0.014	UPSTREAM cpb DOWNSTREAM chinmo INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA
2L	22069879	2L_22069879_SNP [dm3] 2L_22069879_SNP [dm6]	C	A	3.487e^-6	0.014	INTERGENIC	TF binding site mE1_TFBS_sens
X	3829031	X_3829031_SNP [dm3] X_3934998_SNP [dm6]	C	A	3.509e^-6	0.014	NON_SYNONYMOUS_CODING CG2938	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20316059	3R_20316059_SNP [dm3] 3R_24490337_SNP [dm6]	T	C	3.519e^-6	0.014	INTRON nAChRalpha2
X	13166542	X_13166542_SNP [dm3] X_13272509_SNP [dm6]	T	A	3.588e^-6	0.014	START_GAINED HDAC4 UTR_5_PRIME HDAC4 INTRON HDAC4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	22042733	2L_22042733_SNP [dm3] 2L_22042733_SNP [dm6]	C	T	3.593e^-6	0.014	NON_SYNONYMOUS_CODING CG31601
X	1655903	X_1655903_SNP [dm3] X_1761870_SNP [dm6]	C	T	3.601e^-6	0.014	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4988205	3L_4988205_SNP [dm3] 3L_4988205_SNP [dm6]	A	G	3.681e^-6	0.014	INTRON Con
2R	17132967	2R_17132967_SNP [dm3] 2R_21245462_SNP [dm6]	C	A	3.684e^-6	0.014	INTRON ASPP	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	6931476	2R_6931476_SNP [dm3] 2R_11043971_SNP [dm6]	G	C	3.703e^-6	0.014	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8858489	2L_8858489_SNP [dm3] 2L_8858489_SNP [dm6]	T	C	3.710e^-6	0.014	INTERGENIC
2R	17778363	2R_17778363_SNP [dm3] 2R_21890858_SNP [dm6]	C	T	3.710e^-6	0.014	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	19464023	X_19464023_SNP [dm3] X_19569990_SNP [dm6]	C	T	3.720e^-6	0.014	UTR_3_PRIME Tao DOWNSTREAM car & 1 other
3L	21126492	3L_21126492_SNP [dm3] 3L_21133392_SNP [dm6]	C	G	3.729e^-6	0.014	NON_SYNONYMOUS_CODING CG10565 DOWNSTREAM CG10566	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10152178	2R_10152178_SNP [dm3] 2R_14264673_SNP [dm6]	A	G	3.759e^-6	0.014	INTRON CG8547	TF binding site mE1_TFBS_cad
X	1620232	X_1620232_SNP [dm3] X_1726199_SNP [dm6]	C	G	3.818e^-6	0.014	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6712325	2L_6712325_SNP [dm3] 2L_6712325_SNP [dm6]	C	A	3.877e^-6	0.015	UTR_3_PRIME AkhR INTRON AkhR
3L	9764353	3L_9764353_SNP [dm3] 3L_9771253_SNP [dm6]	C	A	3.892e^-6	0.015	INTRON CG8177
X	13613041	X_13613041_DEL [dm3] X_13719008_DEL [dm6]	TTAG	T	3.919e^-6	0.015	UTR_3_PRIME CG9941 UPSTREAM CG9940	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20490533	2R_20490533_SNP [dm3] 2R_24603010_SNP [dm6]	A	G	3.954e^-6	0.015	SYNONYMOUS_CODING CG3565 UPSTREAM CG3570 DOWNSTREAM CG3548	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6301688	3R_6301688_SNP [dm3] 3R_10475966_SNP [dm6]	A	G	3.969e^-6	0.015	INTERGENIC
2L	4530750	2L_4530750_SNP [dm3] 2L_4530750_SNP [dm6]	G	A	4.018e^-6	0.015	INTRON dp
X	20266712	X_20266712_SNP [dm3] X_20395685_SNP [dm6]	C	T	4.028e^-6	0.015	NON_SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4524885	2L_4524885_SNP [dm3] 2L_4524885_SNP [dm6]	C	T	4.063e^-6	0.015	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10984791	3L_10984791_SNP [dm3] 3L_10991691_SNP [dm6]	C	A	4.089e^-6	0.015	INTRON klu	TF binding site BDTNP1_TFBS_dl
3R	24008906	3R_24008906_SNP [dm3] 3R_28183184_SNP [dm6]	A	T	4.089e^-6	0.015	INTRON CG34354
2L	9402804	2L_9402804_INS [dm3] 2L_9402804_INS [dm6]	G	GCA	4.108e^-6	0.015	INTRON Shawl
2L	13559466	2L_13559466_SNP [dm3] 2L_13559466_SNP [dm6]	G	A	4.109e^-6	0.015	INTRON kuz
2R	16680825	2R_16680825_SNP [dm3] 2R_20793320_SNP [dm6]	C	T	4.138e^-6	0.015	SYNONYMOUS_CODING CG15225
2R	20653476	2R_20653476_SNP [dm3] 2R_24765953_SNP [dm6]	G	A	4.139e^-6	0.015	SYNONYMOUS_CODING CG3894 DOWNSTREAM GstE12	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13231599	2R_13231599_SNP [dm3] 2R_17344094_SNP [dm6]	G	A	4.152e^-6	0.015	INTRON mbl
2R	2747286	2R_2747286_SNP [dm3] 2R_6859781_SNP [dm6]	C	A	4.156e^-6	0.015	INTERGENIC
2L	4522219	2L_4522219_SNP [dm3] 2L_4522219_SNP [dm6]	G	A	4.215e^-6	0.015	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4522520	2L_4522520_SNP [dm3] 2L_4522520_SNP [dm6]	C	T	4.215e^-6	0.015	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17654525	3R_17654525_SNP [dm3] 3R_21828803_SNP [dm6]	T	C	4.256e^-6	0.015	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2R	15752766	2R_15752766_INS [dm3] 2R_19865261_INS [dm6]	T	TT	4.272e^-6	0.016	INTRON Obp56i
2L	4528631	2L_4528631_SNP [dm3] 2L_4528631_SNP [dm6]	G	A	4.281e^-6	0.016	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	1631162	X_1631162_SNP [dm3] X_1737129_SNP [dm6]	T	A	4.292e^-6	0.016	UTR_3_PRIME Scgdelta
2L	19319685	2L_19319685_SNP [dm3] 2L_19319685_SNP [dm6]	C	A	4.306e^-6	0.016	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	13770375	2L_13770375_SNP [dm3] 2L_13770375_SNP [dm6]	A	G	4.343e^-6	0.016	UPSTREAM TM9SF4 INTRON TM9SF4
2R	16695096	2R_16695096_SNP [dm3] 2R_20807591_SNP [dm6]	A	C	4.357e^-6	0.016	INTERGENIC
2R	4216701	2R_4216701_SNP [dm3] 2R_8329196_SNP [dm6]	T	A	4.370e^-6	0.016	INTRON pdm3
2R	13853916	2R_13853916_SNP [dm3] 2R_17966411_SNP [dm6]	G	C	4.392e^-6	0.016	INTERGENIC
2L	2968088	2L_2968088_SNP [dm3] 2L_2968088_SNP [dm6]	A	C	4.411e^-6	0.016	UTR_3_PRIME Rbp9 DOWNSTREAM Ts
2L	5788590	2L_5788590_SNP [dm3] 2L_5788590_SNP [dm6]	A	G	4.446e^-6	0.016	INTRON CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5788601	2L_5788601_SNP [dm3] 2L_5788601_SNP [dm6]	T	G	4.446e^-6	0.016	INTRON CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14220420	2R_14220420_SNP [dm3] 2R_18332915_SNP [dm6]	A	T	4.454e^-6	0.016	INTRON sbb
2L	3737068	2L_3737068_SNP [dm3] 2L_3737068_SNP [dm6]	T	A	4.457e^-6	0.016	INTRON CG10019
2R	6931507	2R_6931507_SNP [dm3] 2R_11044002_SNP [dm6]	G	C	4.460e^-6	0.016	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9263570	2L_9263570_DEL [dm3] 2L_9263570_DEL [dm6]	CC	C	4.476e^-6	0.016	UPSTREAM CR45262 INTRON Ggamma30A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6953992	2R_6953992_SNP [dm3] 2R_11066487_SNP [dm6]	C	A	4.539e^-6	0.016	INTRON luna
X	9916026	X_9916026_DEL [dm3] X_10021993_DEL [dm6]	TT	T	4.540e^-6	0.016	INTRON Cht6
2R	20600678	2R_20600678_SNP [dm3] 2R_24713155_SNP [dm6]	G	A	4.554e^-6	0.016	INTRON Mid1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4988293	3L_4988293_SNP [dm3] 3L_4988293_SNP [dm6]	T	G	4.600e^-6	0.016	INTRON Con
X	6882191	X_6882191_SNP [dm3] X_6988158_SNP [dm6]	C	T	4.627e^-6	0.016	DOWNSTREAM bou INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	18960974	X_18960974_SNP [dm3] X_19066941_SNP [dm6]	A	C	4.637e^-6	0.016	NON_SYNONYMOUS_CODING CG14190	TF binding site mE1_TFBS_chinmo
2L	1465923	2L_1465923_SNP [dm3] 2L_1465923_SNP [dm6]	T	C	4.648e^-6	0.016	INTERGENIC	TF binding site mE1_TFBS_sens
2L	1465926	2L_1465926_SNP [dm3] 2L_1465926_SNP [dm6]	C	G	4.648e^-6	0.016	INTERGENIC	TF binding site mE1_TFBS_sens
X	12444085	X_12444085_SNP [dm3] X_12550052_SNP [dm6]	T	A	4.670e^-6	0.016	INTRON CG43921
2L	7722128	2L_7722128_SNP [dm3] 2L_7722128_SNP [dm6]	A	G	4.677e^-6	0.016	DOWNSTREAM CG13795 INTRON CG13794
3L	3476541	3L_3476541_SNP [dm3] 3L_3476541_SNP [dm6]	C	T	4.707e^-6	0.016	INTRON CG42324
X	7057226	X_7057226_SNP [dm3] X_7163193_SNP [dm6]	T	G	4.717e^-6	0.016	INTRON CG9650	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16569041	X_16569041_SNP [dm3] X_16675008_SNP [dm6]	T	A	4.749e^-6	0.016	INTRON CG13012
2L	14159418	2L_14159418_SNP [dm3] 2L_14159418_SNP [dm6]	G	T	4.759e^-6	0.016	UTR_3_PRIME CG17341
2L	4531498	2L_4531498_SNP [dm3] 2L_4531498_SNP [dm6]	T	G	4.761e^-6	0.016	SYNONYMOUS_CODING dp INTRON dp
X	18106314	X_18106314_DEL [dm3] X_18212281_DEL [dm6]	TCT	T	4.844e^-6	0.017	UTR_3_PRIME CG33639 DOWNSTREAM CG33639	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10783146	3L_10783146_SNP [dm3] 3L_10790046_SNP [dm6]	T	A	4.859e^-6	0.017	DOWNSTREAM CR44545 INTERGENIC
3L	10783154	3L_10783154_SNP [dm3] 3L_10790054_SNP [dm6]	A	C	4.859e^-6	0.017	DOWNSTREAM CR44545 INTERGENIC
2R	17763443	2R_17763443_SNP [dm3] 2R_21875938_SNP [dm6]	A	G	4.887e^-6	0.017	INTRON Fili
2L	4747612	2L_4747612_SNP [dm3] 2L_4747612_SNP [dm6]	T	A	4.891e^-6	0.017	INTRON CG15630
3L	21136997	3L_21136997_SNP [dm3] 3L_21143897_SNP [dm6]	A	G	4.909e^-6	0.017	INTRON Ac78C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	2734354	2R_2734354_SNP [dm3] 2R_6846849_SNP [dm6]	G	A	4.985e^-6	0.017	INTERGENIC
3R	4970428	3R_4970428_DEL [dm3] 3R_9144706_DEL [dm6]	AA	A	5.049e^-6	0.017	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3146013	2R_3146013_SNP [dm3] 2R_7258508_SNP [dm6]	C	A	5.097e^-6	0.017	DOWNSTREAM CG1850 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_hkb mE1_TFBS_HSA
X	1621477	X_1621477_SNP [dm3] X_1727444_SNP [dm6]	G	T	5.141e^-6	0.017	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10984721	3L_10984721_SNP [dm3] 3L_10991621_SNP [dm6]	C	A	5.184e^-6	0.017	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14147787	2R_14147787_SNP [dm3] 2R_18260282_SNP [dm6]	C	G	5.205e^-6	0.018	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	24945279	3R_24945279_SNP [dm3] 3R_29119557_SNP [dm6]	G	A	5.213e^-6	0.018	SYNONYMOUS_CODING yem	TF binding site mE1_TFBS_chinmo
2R	13231535	2R_13231535_SNP [dm3] 2R_17344030_SNP [dm6]	C	T	5.248e^-6	0.018	INTRON mbl
2R	20294445	2R_20294445_SNP [dm3] 2R_24406922_SNP [dm6]	C	G	5.257e^-6	0.018	INTRON SerT	TF binding site mE1_TFBS_chinmo
2L	6237434	2L_6237434_SNP [dm3] 2L_6237434_SNP [dm6]	T	C	5.295e^-6	0.018	INTERGENIC
2R	6174454	2R_6174454_SNP [dm3] 2R_10286949_SNP [dm6]	A	G	5.315e^-6	0.018	UPSTREAM CAP INTRON CAP
X	1620746	X_1620746_SNP [dm3] X_1726713_SNP [dm6]	T	A	5.333e^-6	0.018	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	6275587	3R_6275587_SNP [dm3] 3R_10449865_SNP [dm6]	C	T	5.338e^-6	0.018	INTERGENIC
X	16569451	X_16569451_SNP [dm3] X_16675418_SNP [dm6]	C	A	5.346e^-6	0.018	INTRON CG13012
2R	5903842	2R_5903842_DEL [dm3] 2R_10016337_DEL [dm6]	AGA	A	5.360e^-6	0.018	INTRON Pka-R2
2L	13918767	2L_13918767_DEL [dm3] 2L_13918767_DEL [dm6]	TCCAC	T	5.381e^-6	0.018	INTRON Ance-3
2L	13559631	2L_13559631_SNP [dm3] 2L_13559631_SNP [dm6]	T	A	5.394e^-6	0.018	INTRON kuz
2L	22053510	2L_22053510_SNP [dm3] 2L_22053510_SNP [dm6]	T	G	5.472e^-6	0.018	DOWNSTREAM CG34173 INTERGENIC	transposable element FlyBase
3R	11385032	3R_11385032_SNP [dm3] 3R_15559310_SNP [dm6]	C	A	5.489e^-6	0.018	INTERGENIC
2L	10049276	2L_10049276_SNP [dm3] 2L_10049276_SNP [dm6]	A	G	5.525e^-6	0.018	UPSTREAM CG33301 INTERGENIC
2R	19501816	2R_19501816_SNP [dm3] 2R_23614293_SNP [dm6]	C	A	5.570e^-6	0.018	INTRON CG17664 & 1 other
3L	13185039	3L_13185039_SNP [dm3] 3L_13191939_SNP [dm6]	C	A	5.584e^-6	0.018	INTERGENIC
3L	13185359	3L_13185359_SNP [dm3] 3L_13192259_SNP [dm6]	T	G	5.584e^-6	0.018	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13185360	3L_13185360_SNP [dm3] 3L_13192260_SNP [dm6]	A	T	5.584e^-6	0.018	INTERGENIC	TF binding site mE1_TFBS_cad
2L	7964327	2L_7964327_SNP [dm3] 2L_7964327_SNP [dm6]	G	A	5.596e^-6	0.018	INTRON Snoo	TF binding site mE1_TFBS_inv
3L	18067513	3L_18067513_SNP [dm3] 3L_18074413_SNP [dm6]	A	G	5.596e^-6	0.018	UPSTREAM CG44004 DOWNSTREAM CR45391 INTERGENIC
3R	7201699	3R_7201699_DEL [dm3] 3R_11375977_DEL [dm6]	TGGTGCAGCAGCAGAATGT...	T	5.622e^-6	0.018	CODON_DELETION pros INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	17097509	X_17097509_SNP [dm3] X_17203476_SNP [dm6]	C	T	5.664e^-6	0.018	SYNONYMOUS_CODING CG5070 UPSTREAM CG8918
X	3189773	X_3189773_SNP [dm3] X_3295740_SNP [dm6]	G	A	5.719e^-6	0.018	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	15428389	X_15428389_SNP [dm3] X_15534356_SNP [dm6]	C	G	5.740e^-6	0.019	INTRON Ac13E
2L	5919281	2L_5919281_SNP [dm3] 2L_5919281_SNP [dm6]	C	T	5.776e^-6	0.019	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad
2R	10325823	2R_10325823_SNP [dm3] 2R_14438318_SNP [dm6]	A	C	5.808e^-6	0.019	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	10721590	2L_10721590_SNP [dm3] 2L_10721590_SNP [dm6]	T	C	5.812e^-6	0.019	INTERGENIC
3L	4238976	3L_4238976_SNP [dm3] 3L_4238976_SNP [dm6]	T	C	5.861e^-6	0.019	INTERGENIC
2R	5107907	2R_5107907_SNP [dm3] 2R_9220402_SNP [dm6]	C	A	5.911e^-6	0.019	INTERGENIC
X	6882663	X_6882663_SNP [dm3] X_6988630_SNP [dm6]	G	T	5.913e^-6	0.019	INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	1859707	2L_1859707_SNP [dm3] 2L_1859707_SNP [dm6]	C	A	5.919e^-6	0.019	INTRON CG31663
3L	5339742	3L_5339742_SNP [dm3] 3L_5346642_SNP [dm6]	T	C	5.922e^-6	0.019	INTRON lama
2L	4530210	2L_4530210_SNP [dm3] 2L_4530210_SNP [dm6]	T	G	5.959e^-6	0.019	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad
3R	4121263	3R_4121263_SNP [dm3] 3R_8295541_SNP [dm6]	G	T	6.061e^-6	0.019	SYNONYMOUS_CODING CG9626	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	17362980	2R_17362980_SNP [dm3] 2R_21475475_SNP [dm6]	T	G	6.081e^-6	0.019	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19182974	3L_19182974_SNP [dm3] 3L_19189874_SNP [dm6]	C	T	6.087e^-6	0.019	INTRON fz2
3L	19183034	3L_19183034_SNP [dm3] 3L_19189934_SNP [dm6]	T	A	6.087e^-6	0.019	INTRON fz2	TF binding site BDTNP1_TFBS_da
2L	22053674	2L_22053674_SNP [dm3] 2L_22053674_SNP [dm6]	T	C	6.118e^-6	0.019	DOWNSTREAM CG34173 INTERGENIC
3L	5850749	3L_5850749_SNP [dm3] 3L_5857649_SNP [dm6]	C	T	6.135e^-6	0.019	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	1642654	X_1642654_SNP [dm3] X_1748621_SNP [dm6]	G	T	6.149e^-6	0.019	INTRON Scgdelta	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5063641	2L_5063641_SNP [dm3] 2L_5063641_SNP [dm6]	A	G	6.243e^-6	0.02	UPSTREAM qtc & 1 other INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6962922	2R_6962922_SNP [dm3] 2R_11075417_SNP [dm6]	T	C	6.244e^-6	0.02	INTRON luna
3L	10766448	3L_10766448_SNP [dm3] 3L_10773348_SNP [dm6]	T	A	6.305e^-6	0.02	UTR_3_PRIME CG43245
2L	12768080	2L_12768080_SNP [dm3] 2L_12768080_SNP [dm6]	C	T	6.453e^-6	0.02	INTERGENIC
2R	14293345	2R_14293345_SNP [dm3] 2R_18405840_SNP [dm6]	T	G	6.486e^-6	0.02	UPSTREAM GstE6 DOWNSTREAM GstE5 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
2R	15065729	2R_15065729_SNP [dm3] 2R_19178224_SNP [dm6]	A	G	6.492e^-6	0.02	UPSTREAM hppy DOWNSTREAM CG10737 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5831180	3L_5831180_SNP [dm3] 3L_5838080_SNP [dm6]	G	T	6.522e^-6	0.02	INTRON vn
X	13613005	X_13613005_SNP [dm3] X_13718972_SNP [dm6]	G	A	6.574e^-6	0.02	UTR_3_PRIME CG9941 UPSTREAM CG9940	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15028610	2R_15028610_SNP [dm3] 2R_19141105_SNP [dm6]	T	C	6.589e^-6	0.02	UPSTREAM ena DOWNSTREAM CG15111 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	11375685	3L_11375685_SNP [dm3] 3L_11382585_SNP [dm6]	G	A	6.599e^-6	0.02	DOWNSTREAM CR42755 INTERGENIC
3R	22963235	3R_22963235_SNP [dm3] 3R_27137513_SNP [dm6]	T	G	6.664e^-6	0.02	INTRON CG6051
3R	22963242	3R_22963242_SNP [dm3] 3R_27137520_SNP [dm6]	G	C	6.664e^-6	0.02	INTRON CG6051
3R	22965892	3R_22965892_DEL [dm3] 3R_27140170_DEL [dm6]	GTTG	G	6.664e^-6	0.02	INTRON CG6051	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22965919	3R_22965919_SNP [dm3] 3R_27140197_SNP [dm6]	T	C	6.664e^-6	0.02	INTRON CG6051	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22973937	3R_22973937_SNP [dm3] 3R_27148215_SNP [dm6]	C	A	6.664e^-6	0.02	INTRON CG6051	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13725680	2L_13725680_SNP [dm3] 2L_13725680_SNP [dm6]	A	G	6.670e^-6	0.02	INTERGENIC
2L	13725681	2L_13725681_INS [dm3] 2L_13725681_INS [dm6]	T	TTAAATGTAATG...	6.670e^-6	0.02	INTERGENIC
2L	13726896	2L_13726896_SNP [dm3] 2L_13726896_SNP [dm6]	G	A	6.670e^-6	0.02	INTERGENIC
2L	13726901	2L_13726901_SNP [dm3] 2L_13726901_SNP [dm6]	T	A	6.670e^-6	0.02	INTERGENIC
2L	13727151	2L_13727151_SNP [dm3] 2L_13727151_SNP [dm6]	A	G	6.670e^-6	0.02	INTERGENIC
3L	21111236	3L_21111236_SNP [dm3] 3L_21118136_SNP [dm6]	A	G	6.697e^-6	0.02	INTRON ko
X	1648092	X_1648092_SNP [dm3] X_1754059_SNP [dm6]	C	T	6.718e^-6	0.02	UTR_5_PRIME Scgdelta	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9408883	2L_9408883_SNP [dm3] 2L_9408883_SNP [dm6]	C	A	6.820e^-6	0.021	INTRON Shawl
2L	5902516	2L_5902516_SNP [dm3] 2L_5902516_SNP [dm6]	A	C	6.847e^-6	0.021	DOWNSTREAM CG9021 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	3894142	2R_3894142_SNP [dm3] 2R_8006637_SNP [dm6]	T	C	6.848e^-6	0.021	UTR_3_PRIME Odc1 UPSTREAM Odc2	TF binding site mE1_TFBS_HSA
X	15730792	X_15730792_SNP [dm3] X_15836759_SNP [dm6]	C	T	6.875e^-6	0.021	UTR_3_PRIME CG32582
3L	3495560	3L_3495560_SNP [dm3] 3L_3495560_SNP [dm6]	G	A	6.894e^-6	0.021	INTRON CG42324
2L	3889915	2L_3889915_SNP [dm3] 2L_3889915_SNP [dm6]	T	C	6.929e^-6	0.021	UTR_5_PRIME capu INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
2R	10335049	2R_10335049_SNP [dm3] 2R_14447544_SNP [dm6]	T	A	6.929e^-6	0.021	INTRON Oaz	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	10335209	2R_10335209_SNP [dm3] 2R_14447704_SNP [dm6]	A	C	6.929e^-6	0.021	INTRON Oaz	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	15358850	3R_15358850_SNP [dm3] 3R_19533128_SNP [dm6]	G	T	6.959e^-6	0.021	INTRON Dys
2L	9827465	2L_9827465_SNP [dm3] 2L_9827465_SNP [dm6]	A	C	6.983e^-6	0.021	INTRON nAChRalpha6
2R	6083096	2R_6083096_SNP [dm3] 2R_10195591_SNP [dm6]	T	A	7.036e^-6	0.021	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	6083098	2R_6083098_INS [dm3] 2R_10195593_INS [dm6]	A	ATAATAATATATA...	7.036e^-6	0.021	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	6083117	2R_6083117_SNP [dm3] 2R_10195612_SNP [dm6]	A	G	7.036e^-6	0.021	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	4517387	2L_4517387_SNP [dm3] 2L_4517387_SNP [dm6]	C	T	7.121e^-6	0.021	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	6458846	2R_6458846_INS [dm3] 2R_10571341_INS [dm6]	G	GAACCAACCGTCGACGACGA...	7.121e^-6	0.021	INTRON psq
2R	9815595	2R_9815595_SNP [dm3] 2R_13928090_SNP [dm6]	G	A	7.150e^-6	0.021	INTRON shot
2R	9821695	2R_9821695_SNP [dm3] 2R_13934190_SNP [dm6]	A	T	7.150e^-6	0.021	SPLICE_SITE_REGION shot INTRON shot	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_ttk
2R	9825099	2R_9825099_SNP [dm3] 2R_13937594_SNP [dm6]	G	A	7.150e^-6	0.021	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
2R	6953017	2R_6953017_SNP [dm3] 2R_11065512_SNP [dm6]	G	A	7.198e^-6	0.021	INTRON luna
X	1621065	X_1621065_SNP [dm3] X_1727032_SNP [dm6]	C	T	7.243e^-6	0.021	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	17237785	2L_17237785_SNP [dm3] 2L_17237785_SNP [dm6]	G	C	7.248e^-6	0.021	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1688271	2L_1688271_SNP [dm3] 2L_1688271_SNP [dm6]	T	C	7.252e^-6	0.021	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3476124	2L_3476124_SNP [dm3] 2L_3476124_SNP [dm6]	T	A	7.253e^-6	0.021	UPSTREAM CR43928 DOWNSTREAM pgant4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7435369	2L_7435369_SNP [dm3] 2L_7435369_SNP [dm6]	G	A	7.266e^-6	0.021	INTERGENIC
2R	13270834	2R_13270834_SNP [dm3] 2R_17383329_SNP [dm6]	G	A	7.356e^-6	0.021	INTERGENIC
X	15634565	X_15634565_SNP [dm3] X_15740532_SNP [dm6]	C	T	7.381e^-6	0.021	DOWNSTREAM CG8206 & 1 other INTERGENIC	TF binding site mE1_TFBS_cnc
2R	10325812	2R_10325812_SNP [dm3] 2R_14438307_SNP [dm6]	T	C	7.415e^-6	0.021	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	3814734	2L_3814734_SNP [dm3] 2L_3814734_SNP [dm6]	T	A	7.424e^-6	0.021	UPSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	6237739	2L_6237739_SNP [dm3] 2L_6237739_SNP [dm6]	C	G	7.459e^-6	0.021	INTERGENIC
X	3215568	X_3215568_SNP [dm3] X_3321535_SNP [dm6]	T	G	7.459e^-6	0.021	INTRON CR44886 & 1 other
X	3216152	X_3216152_SNP [dm3] X_3322119_SNP [dm6]	T	C	7.459e^-6	0.021	INTRON CR44886 & 1 other
X	1642667	X_1642667_SNP [dm3] X_1748634_SNP [dm6]	G	A	7.515e^-6	0.022	INTRON Scgdelta	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13238366	2R_13238366_SNP [dm3] 2R_17350861_SNP [dm6]	A	G	7.525e^-6	0.022	INTRON mbl
2R	6174439	2R_6174439_SNP [dm3] 2R_10286934_SNP [dm6]	A	T	7.533e^-6	0.022	UPSTREAM CAP INTRON CAP
2R	6174446	2R_6174446_SNP [dm3] 2R_10286941_SNP [dm6]	C	A	7.533e^-6	0.022	UPSTREAM CAP INTRON CAP
3R	4880712	3R_4880712_SNP [dm3] 3R_9054990_SNP [dm6]	C	T	7.613e^-6	0.022	INTRON Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	24012629	3R_24012629_SNP [dm3] 3R_28186907_SNP [dm6]	C	G	7.615e^-6	0.022	INTRON CG34354
2L	7193752	2L_7193752_SNP [dm3] 2L_7193752_SNP [dm6]	G	T	7.662e^-6	0.022	INTRON CG4497	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	19502307	2R_19502307_SNP [dm3] 2R_23614784_SNP [dm6]	T	C	7.726e^-6	0.022	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
2L	15075317	2L_15075317_SNP [dm3] 2L_15075317_SNP [dm6]	A	G	7.751e^-6	0.022	UTR_5_PRIME CG15270 DOWNSTREAM vas INTRON CG15270
X	12256364	X_12256364_SNP [dm3] X_12362331_SNP [dm6]	C	G	7.857e^-6	0.022	INTERGENIC
2R	6299009	2R_6299009_SNP [dm3] 2R_10411504_SNP [dm6]	T	C	7.914e^-6	0.022	UPSTREAM CG33476 & 1 other INTRON CG42732
2R	16271704	2R_16271704_SNP [dm3] 2R_20384199_SNP [dm6]	C	T	8.051e^-6	0.023	INTERGENIC
3R	22965829	3R_22965829_SNP [dm3] 3R_27140107_SNP [dm6]	C	T	8.051e^-6	0.023	INTRON CG6051	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5868141	2R_5868141_SNP [dm3] 2R_9980636_SNP [dm6]	T	C	8.080e^-6	0.023	UTR_3_PRIME eve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22963207	3R_22963207_SNP [dm3] 3R_27137485_SNP [dm6]	C	T	8.123e^-6	0.023	INTRON CG6051
3R	22987076	3R_22987076_SNP [dm3] 3R_27161354_SNP [dm6]	G	T	8.123e^-6	0.023	NON_SYNONYMOUS_CODING CG5909
2L	4337127	2L_4337127_SNP [dm3] 2L_4337127_SNP [dm6]	C	T	8.272e^-6	0.023	INTRON Atet	TF binding site BDTNP1_TFBS_da
2L	4338949	2L_4338949_SNP [dm3] 2L_4338949_SNP [dm6]	T	C	8.272e^-6	0.023	UTR_5_PRIME Atet INTRON Atet	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	4339710	2L_4339710_SNP [dm3] 2L_4339710_SNP [dm6]	T	A	8.272e^-6	0.023	INTRON Atet	TF binding site mE1_TFBS_inv
2L	4339715	2L_4339715_SNP [dm3] 2L_4339715_SNP [dm6]	A	T	8.272e^-6	0.023	INTRON Atet	TF binding site mE1_TFBS_inv
X	14947510	X_14947510_SNP [dm3] X_15053477_SNP [dm6]	T	C	8.272e^-6	0.023	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14949378	X_14949378_SNP [dm3] X_15055345_SNP [dm6]	A	T	8.272e^-6	0.023	INTRON hiw
X	14951095	X_14951095_SNP [dm3] X_15057062_SNP [dm6]	A	G	8.272e^-6	0.023	INTRON hiw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	11215394	X_11215394_SNP [dm3] X_11321361_SNP [dm6]	C	A	8.302e^-6	0.023	DOWNSTREAM sisA INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13732205	2L_13732205_SNP [dm3] 2L_13732205_SNP [dm6]	T	C	8.305e^-6	0.023	INTERGENIC
3L	11419913	3L_11419913_SNP [dm3] 3L_11426813_SNP [dm6]	G	T	8.315e^-6	0.023	DOWNSTREAM CG7560 INTERGENIC
2L	5332486	2L_5332486_DEL [dm3] 2L_5332486_DEL [dm6]	CT	C	8.347e^-6	0.023	UTR_5_PRIME fusl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6174459	2R_6174459_SNP [dm3] 2R_10286954_SNP [dm6]	A	C	8.421e^-6	0.023	UPSTREAM CAP INTRON CAP
2R	16248234	2R_16248234_SNP [dm3] 2R_20360729_SNP [dm6]	A	C	8.458e^-6	0.023	INTERGENIC
2L	19325119	2L_19325119_SNP [dm3] 2L_19325119_SNP [dm6]	T	G	8.471e^-6	0.023	EXON CR45700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	5276482	2L_5276482_SNP [dm3] 2L_5276482_SNP [dm6]	C	T	8.499e^-6	0.023	INTRON Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9822218	2R_9822218_SNP [dm3] 2R_13934713_SNP [dm6]	C	A	8.510e^-6	0.023	INTRON shot	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
2L	3476134	2L_3476134_SNP [dm3] 2L_3476134_SNP [dm6]	T	C	8.515e^-6	0.023	UPSTREAM CR43928 DOWNSTREAM pgant4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	18702930	2L_18702930_SNP [dm3] 2L_18702930_SNP [dm6]	G	A	8.527e^-6	0.023	START_GAINED CG10376 UTR_5_PRIME CG10376 UPSTREAM CG10343	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	19830921	2L_19830921_SNP [dm3] 2L_19830921_SNP [dm6]	C	T	8.613e^-6	0.024	INTRON sick
2L	22117811	2L_22117811_SNP [dm3] 2L_22117811_SNP [dm6]	G	A	8.661e^-6	0.024	INTERGENIC	transposable element FlyBase
X	14699818	X_14699818_SNP [dm3] X_14805785_SNP [dm6]	A	C	8.706e^-6	0.024	INTRON rut
2R	14293440	2R_14293440_SNP [dm3] 2R_18405935_SNP [dm6]	A	G	8.723e^-6	0.024	UPSTREAM GstE6 & 1 other DOWNSTREAM GstE5 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
2R	14293619	2R_14293619_SNP [dm3] 2R_18406114_SNP [dm6]	C	T	8.723e^-6	0.024	SYNONYMOUS_CODING GstE6 UPSTREAM GstE7 DOWNSTREAM GstE5	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
2L	12597141	2L_12597141_SNP [dm3] 2L_12597141_SNP [dm6]	G	A	8.736e^-6	0.024	INTRON nub
2L	5900268	2L_5900268_SNP [dm3] 2L_5900268_SNP [dm6]	T	G	8.742e^-6	0.024	EXON CR44579
2L	6237505	2L_6237505_SNP [dm3] 2L_6237505_SNP [dm6]	G	T	8.750e^-6	0.024	INTERGENIC
2L	19915911	2L_19915911_SNP [dm3] 2L_19915911_SNP [dm6]	G	C	8.752e^-6	0.024	INTRON sick	TF binding site mE1_TFBS_bab1
3L	3763920	3L_3763920_SNP [dm3] 3L_3763920_SNP [dm6]	A	C	8.755e^-6	0.024	INTRON CG32264	TF binding site BDTNP1_TFBS_dl
2L	22116037	2L_22116037_SNP [dm3] 2L_22116037_SNP [dm6]	T	A	8.792e^-6	0.024	INTERGENIC	transposable element FlyBase
2L	8046490	2L_8046490_SNP [dm3] 2L_8046490_SNP [dm6]	T	C	8.857e^-6	0.024	SYNONYMOUS_CODING CG7466
2R	13637158	2R_13637158_SNP [dm3] 2R_17749653_SNP [dm6]	C	A	8.871e^-6	0.024	SYNONYMOUS_CODING CG10931 UPSTREAM CG5002	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	6810425	2L_6810425_SNP [dm3] 2L_6810425_SNP [dm6]	G	T	8.902e^-6	0.024	INTERGENIC
3L	17097290	3L_17097290_SNP [dm3] 3L_17104190_SNP [dm6]	T	G	8.952e^-6	0.024	INTRON Rbp6
3L	8962396	3L_8962396_SNP [dm3] 3L_8969296_SNP [dm6]	G	A	8.980e^-6	0.024	SYNONYMOUS_CODING CG5026	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6083095	2R_6083095_SNP [dm3] 2R_10195590_SNP [dm6]	C	A	8.982e^-6	0.024	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	21316724	2L_21316724_SNP [dm3] 2L_21316724_SNP [dm6]	C	T	8.991e^-6	0.024	INTRON crc
2R	8541052	2R_8541052_SNP [dm3] 2R_12653547_SNP [dm6]	G	T	9.172e^-6	0.024	SYNONYMOUS_CODING ZnT49B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5913293	X_5913293_SNP [dm3] X_6019260_SNP [dm6]	A	C	9.318e^-6	0.025	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5913305	X_5913305_SNP [dm3] X_6019272_SNP [dm6]	T	A	9.318e^-6	0.025	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18007940	2R_18007940_SNP [dm3] 2R_22120435_SNP [dm6]	C	T	9.423e^-6	0.025	INTRON Vrp1
3R	22959476	3R_22959476_SNP [dm3] 3R_27133754_SNP [dm6]	C	A	9.465e^-6	0.025	INTRON CG6051
2L	22053641	2L_22053641_SNP [dm3] 2L_22053641_SNP [dm6]	C	A	9.472e^-6	0.025	DOWNSTREAM CG34173 INTERGENIC
2L	7642343	2L_7642343_DEL [dm3] 2L_7642343_DEL [dm6]	TT	T	9.527e^-6	0.025	UTR_3_PRIME Slob	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	7059762	2R_7059762_SNP [dm3] 2R_11172257_SNP [dm6]	A	T	9.530e^-6	0.025	UPSTREAM CG13229 INTRON shn	TF binding site BDTNP1_TFBS_slp1
2L	13062968	2L_13062968_SNP [dm3] 2L_13062968_SNP [dm6]	G	T	9.538e^-6	0.025	INTERGENIC
2R	14698646	2R_14698646_SNP [dm3] 2R_18811141_SNP [dm6]	T	A	9.560e^-6	0.025	INTRON CG15096
2L	6961998	2L_6961998_SNP [dm3] 2L_6961998_SNP [dm6]	T	C	9.566e^-6	0.025	NON_SYNONYMOUS_CODING sip2 DOWNSTREAM CG10399
2L	9416620	2L_9416620_SNP [dm3] 2L_9416620_SNP [dm6]	A	G	9.576e^-6	0.025	SPLICE_SITE_REGION Mco1 UTR_5_PRIME Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	15462214	X_15462214_SNP [dm3] X_15568181_SNP [dm6]	A	C	9.644e^-6	0.025	UPSTREAM CG7860 INTERGENIC
2L	13092018	2L_13092018_SNP [dm3] 2L_13092018_SNP [dm6]	A	T	9.666e^-6	0.025	INTERGENIC
2L	4339720	2L_4339720_SNP [dm3] 2L_4339720_SNP [dm6]	A	C	9.712e^-6	0.025	INTRON Atet	TF binding site mE1_TFBS_inv
2R	2082433	2R_2082433_SNP [dm3] 2R_6194928_SNP [dm6]	G	C	9.741e^-6	0.025	INTRON Ptr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	22893296	3R_22893296_SNP [dm3] 3R_27067574_SNP [dm6]	G	T	9.795e^-6	0.025	INTRON spz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	6259266	3R_6259266_SNP [dm3] 3R_10433544_SNP [dm6]	C	T	9.827e^-6	0.026	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4347781	2L_4347781_SNP [dm3] 2L_4347781_SNP [dm6]	G	T	9.834e^-6	0.026	SPLICE_SITE_DONOR CR44697 UPSTREAM CR44698 INTRON CR44697	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	13991203	X_13991203_SNP [dm3] X_14097170_SNP [dm6]	A	T	9.853e^-6	0.026	INTERGENIC
2R	19998303	2R_19998303_SNP [dm3] 2R_24110780_SNP [dm6]	T	A	9.891e^-6	0.026	INTRON CG4049
2L	1718414	2L_1718414_SNP [dm3] 2L_1718414_SNP [dm6]	A	T	9.908e^-6	0.026	SPLICE_SITE_REGION Rim2 INTRON Rim2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4935838	3L_4935838_SNP [dm3] 3L_4935838_SNP [dm6]	C	T	9.922e^-6	0.026	DOWNSTREAM Con INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	18571744	3L_18571744_SNP [dm3] 3L_18578644_SNP [dm6]	A	G	1.004e^-5	0.026	INTERGENIC
2L	5494068	2L_5494068_INS [dm3] 2L_5494068_INS [dm6]	C	CC	1.005e^-5	0.026	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9428482	2L_9428482_SNP [dm3] 2L_9428482_SNP [dm6]	T	C	1.009e^-5	0.026	NON_SYNONYMOUS_CODING CG42847 DOWNSTREAM FucTB & 1 other
2L	3018506	2L_3018506_SNP [dm3] 2L_3018506_SNP [dm6]	G	T	1.012e^-5	0.026	UPSTREAM CG17264 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3476139	2L_3476139_INS [dm3] 2L_3476139_INS [dm6]	C	CAAACTC	1.013e^-5	0.026	UPSTREAM CR43928 DOWNSTREAM pgant4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	471188	3L_471188_SNP [dm3] 3L_471188_SNP [dm6]	T	C	1.019e^-5	0.026	INTRON klar	TF binding site mE1_TFBS_sens
3L	471195	3L_471195_SNP [dm3] 3L_471195_SNP [dm6]	A	T	1.019e^-5	0.026	INTRON klar	TF binding site mE1_TFBS_sens
2L	7729204	2L_7729204_SNP [dm3] 2L_7729204_SNP [dm6]	G	A	1.025e^-5	0.026	SYNONYMOUS_CODING CG13796
2R	14293484	2R_14293484_SNP [dm3] 2R_18405979_SNP [dm6]	G	A	1.027e^-5	0.026	UPSTREAM GstE6 & 1 other DOWNSTREAM GstE5 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
2R	8540261	2R_8540261_SNP [dm3] 2R_12652756_SNP [dm6]	C	A	1.028e^-5	0.026	UPSTREAM ZnT49B & 1 other INTERGENIC
X	2400556	X_2400556_SNP [dm3] X_2506523_SNP [dm6]	C	T	1.031e^-5	0.026	UPSTREAM trol INTRON trol
3L	7448486	3L_7448486_INS [dm3] 3L_7455386_INS [dm6]	A	ATC	1.040e^-5	0.026	UPSTREAM ppk26 DOWNSTREAM CG42458 INTERGENIC
3L	16492838	3L_16492838_SNP [dm3] 3L_16499738_SNP [dm6]	A	C	1.042e^-5	0.026	INTRON CG43373 & 1 other
2R	20294488	2R_20294488_SNP [dm3] 2R_24406965_SNP [dm6]	G	A	1.044e^-5	0.026	SYNONYMOUS_CODING SerT	TF binding site mE1_TFBS_chinmo
2L	2330566	2L_2330566_SNP [dm3] 2L_2330566_SNP [dm6]	T	A	1.046e^-5	0.026	INTRON CG9967 & 1 other
2R	3315698	2R_3315698_SNP [dm3] 2R_7428193_SNP [dm6]	G	A	1.047e^-5	0.026	NON_SYNONYMOUS_CODING CG11145 INTRON so	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17934007	2R_17934007_SNP [dm3] 2R_22046502_SNP [dm6]	A	G	1.051e^-5	0.027	INTERGENIC
3R	22495958	3R_22495958_SNP [dm3] 3R_26670236_SNP [dm6]	T	G	1.057e^-5	0.027	INTRON beat-VII
3R	37589	3R_37589_SNP [dm3] 3R_4211867_SNP [dm6]	T	G	1.062e^-5	0.027	INTRON CG14636 & 1 other
X	19202822	X_19202822_SNP [dm3] X_19308789_SNP [dm6]	C	T	1.065e^-5	0.027	UPSTREAM CG8051 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5507532	2L_5507532_SNP [dm3] 2L_5507532_SNP [dm6]	T	C	1.067e^-5	0.027	INTERGENIC
3R	8996815	3R_8996815_SNP [dm3] 3R_13171093_SNP [dm6]	C	A	1.075e^-5	0.027	INTERGENIC
2L	13437368	2L_13437368_SNP [dm3] 2L_13437368_SNP [dm6]	A	G	1.079e^-5	0.027	DOWNSTREAM CR45683 INTRON CG42784 & 1 other
3L	10766401	3L_10766401_SNP [dm3] 3L_10773301_SNP [dm6]	C	T	1.081e^-5	0.027	UTR_3_PRIME CG43245 INTRON CG43245
3L	10767872	3L_10767872_SNP [dm3] 3L_10774772_SNP [dm6]	G	T	1.081e^-5	0.027	INTERGENIC
3L	5850735	3L_5850735_SNP [dm3] 3L_5857635_SNP [dm6]	C	T	1.086e^-5	0.027	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	6080795	2R_6080795_SNP [dm3] 2R_10193290_SNP [dm6]	A	T	1.087e^-5	0.027	UPSTREAM KCNQ INTERGENIC
2R	8536153	2R_8536153_SNP [dm3] 2R_12648648_SNP [dm6]	G	T	1.104e^-5	0.027	UPSTREAM CG8785 INTERGENIC
2L	13064268	2L_13064268_SNP [dm3] 2L_13064268_SNP [dm6]	A	T	1.105e^-5	0.027	INTERGENIC
2R	18887108	2R_18887108_SNP [dm3] 2R_22999585_SNP [dm6]	T	G	1.106e^-5	0.027	UPSTREAM CG9896 INTRON twi
2L	4682529	2L_4682529_INS [dm3] 2L_4682529_INS [dm6]	G	GGAGTATTTTCCTG...	1.109e^-5	0.027	UPSTREAM CG11929 DOWNSTREAM Bsg25A INTERGENIC
X	4664834	X_4664834_SNP [dm3] X_4770801_SNP [dm6]	G	T	1.112e^-5	0.027	SYNONYMOUS_CODING Bteb2 UPSTREAM CG15472	TF binding site BDTNP1_TFBS_twi
2R	7059765	2R_7059765_SNP [dm3] 2R_11172260_SNP [dm6]	A	T	1.114e^-5	0.027	UPSTREAM CG13229 INTRON shn	TF binding site BDTNP1_TFBS_slp1
2L	8776903	2L_8776903_SNP [dm3] 2L_8776903_SNP [dm6]	G	T	1.136e^-5	0.028	UPSTREAM CG9466 DOWNSTREAM CG9468 INTERGENIC	transposable element FlyBase
2R	10091584	2R_10091584_SNP [dm3] 2R_14204079_SNP [dm6]	A	G	1.144e^-5	0.028	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	12997588	X_12997588_SNP [dm3] X_13103555_SNP [dm6]	G	C	1.149e^-5	0.028	INTRON CG43313
3L	10902607	3L_10902607_SNP [dm3] 3L_10909507_SNP [dm6]	C	T	1.156e^-5	0.028	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19076265	X_19076265_INS [dm3] X_19182232_INS [dm6]	T	TAT	1.164e^-5	0.029	DOWNSTREAM CG7453 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1288574	2L_1288574_SNP [dm3] 2L_1288574_SNP [dm6]	T	A	1.165e^-5	0.029	INTRON robo3
3L	10483292	3L_10483292_SNP [dm3] 3L_10490192_SNP [dm6]	C	A	1.168e^-5	0.029	UPSTREAM S-Lap4 INTRON A2bp1
2L	4137973	2L_4137973_SNP [dm3] 2L_4137973_SNP [dm6]	A	T	1.168e^-5	0.029	INTERGENIC
2L	22059419	2L_22059419_SNP [dm3] 2L_22059419_SNP [dm6]	T	C	1.169e^-5	0.029	INTERGENIC
2L	20683420	2L_20683420_SNP [dm3] 2L_20683420_SNP [dm6]	A	C	1.171e^-5	0.029	UTR_3_PRIME CG2617 DOWNSTREAM Hr38	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4515780	2R_4515780_SNP [dm3] 2R_8628275_SNP [dm6]	T	C	1.172e^-5	0.029	SYNONYMOUS_CODING CG14749 UPSTREAM beta3GalTII	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	4347807	2L_4347807_SNP [dm3] 2L_4347807_SNP [dm6]	T	G	1.182e^-5	0.029	UPSTREAM CR44698 INTRON CR44697	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	18641859	X_18641859_SNP [dm3] X_18747826_SNP [dm6]	C	T	1.183e^-5	0.029	NON_SYNONYMOUS_CODING CG12609
X	18641919	X_18641919_SNP [dm3] X_18747886_SNP [dm6]	C	T	1.183e^-5	0.029	NON_SYNONYMOUS_CODING CG12609
2L	13734436	2L_13734436_SNP [dm3] 2L_13734436_SNP [dm6]	T	G	1.185e^-5	0.029	INTERGENIC
3L	18387326	3L_18387326_SNP [dm3] 3L_18394226_SNP [dm6]	A	G	1.185e^-5	0.029	INTERGENIC	TF binding site mE1_TFBS_cad
2R	20184643	2R_20184643_SNP [dm3] 2R_24297120_SNP [dm6]	C	T	1.202e^-5	0.029	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21119408	3L_21119408_SNP [dm3] 3L_21126308_SNP [dm6]	C	T	1.217e^-5	0.029	INTRON ko
2L	6089583	2L_6089583_SNP [dm3] 2L_6089583_SNP [dm6]	A	G	1.224e^-5	0.029	INTRON Kr-h1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2L	4980206	2L_4980206_SNP [dm3] 2L_4980206_SNP [dm6]	G	T	1.230e^-5	0.03	SYNONYMOUS_CODING CG8892 UPSTREAM CG8891	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	7642337	2L_7642337_INS [dm3] 2L_7642337_INS [dm6]	T	TGT	1.234e^-5	0.03	UTR_3_PRIME Slob	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	12208680	3L_12208680_SNP [dm3] 3L_12215580_SNP [dm6]	G	A	1.234e^-5	0.03	INTRON app	TF binding site mE1_TFBS_chinmo
2R	5292617	2R_5292617_SNP [dm3] 2R_9405112_SNP [dm6]	A	C	1.243e^-5	0.03	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14964247	X_14964247_SNP [dm3] X_15070214_SNP [dm6]	A	G	1.252e^-5	0.03	UTR_3_PRIME Lsd-2
3L	10767901	3L_10767901_SNP [dm3] 3L_10774801_SNP [dm6]	T	G	1.266e^-5	0.03	INTERGENIC
2R	17358238	2R_17358238_SNP [dm3] 2R_21470733_SNP [dm6]	T	G	1.267e^-5	0.03	INTRON Sdc
2R	14149331	2R_14149331_SNP [dm3] 2R_18261826_SNP [dm6]	C	A	1.269e^-5	0.03	INTERGENIC
2L	20660063	2L_20660063_SNP [dm3] 2L_20660063_SNP [dm6]	G	T	1.276e^-5	0.03	SYNONYMOUS_CODING CG31678 DOWNSTREAM CG2614	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7448494	3L_7448494_SNP [dm3] 3L_7455394_SNP [dm6]	T	A	1.290e^-5	0.031	UPSTREAM ppk26 DOWNSTREAM CG42458 INTERGENIC
3R	8996147	3R_8996147_SNP [dm3] 3R_13170425_SNP [dm6]	G	A	1.292e^-5	0.031	INTERGENIC
X	1621071	X_1621071_SNP [dm3] X_1727038_SNP [dm6]	T	C	1.300e^-5	0.031	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10765742	3L_10765742_SNP [dm3] 3L_10772642_SNP [dm6]	C	A	1.317e^-5	0.031	INTRON CG43245	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18772128	2R_18772128_SNP [dm3] 2R_22884605_SNP [dm6]	T	G	1.323e^-5	0.031	NON_SYNONYMOUS_CODING CG3499	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	16647675	3R_16647675_SNP [dm3] 3R_20821953_SNP [dm6]	A	T	1.328e^-5	0.031	UPSTREAM RpS20 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	13215794	2R_13215794_SNP [dm3] 2R_17328289_SNP [dm6]	C	T	1.336e^-5	0.031	INTRON mbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11512364	3L_11512364_SNP [dm3] 3L_11519264_SNP [dm6]	T	C	1.338e^-5	0.031	NON_SYNONYMOUS_CODING Fuca DOWNSTREAM CG7512
3L	3494631	3L_3494631_SNP [dm3] 3L_3494631_SNP [dm6]	A	G	1.341e^-5	0.031	INTRON CG42324
2L	5109487	2L_5109487_SNP [dm3] 2L_5109487_SNP [dm6]	G	A	1.341e^-5	0.031	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_Trl
2L	10710705	2L_10710705_SNP [dm3] 2L_10710705_SNP [dm6]	T	G	1.342e^-5	0.031	EXON CR44407
X	12999492	X_12999492_SNP [dm3] X_13105459_SNP [dm6]	A	G	1.354e^-5	0.032	INTRON CG43313
2R	16650909	2R_16650909_SNP [dm3] 2R_20763404_SNP [dm6]	A	G	1.355e^-5	0.032	INTERGENIC
3R	8222362	3R_8222362_SNP [dm3] 3R_12396640_SNP [dm6]	A	T	1.364e^-5	0.032	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
3L	11009970	3L_11009970_SNP [dm3] 3L_11016870_SNP [dm6]	A	C	1.365e^-5	0.032	INTERGENIC
3L	4831054	3L_4831054_SNP [dm3] 3L_4831054_SNP [dm6]	C	A	1.372e^-5	0.032	NON_SYNONYMOUS_CODING CG13708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13118688	2L_13118688_SNP [dm3] 2L_13118688_SNP [dm6]	G	A	1.389e^-5	0.032	UPSTREAM CG43050 DOWNSTREAM CR44198 INTERGENIC
2L	7643704	2L_7643704_SNP [dm3] 2L_7643704_SNP [dm6]	A	G	1.390e^-5	0.032	SYNONYMOUS_CODING Slob UTR_3_PRIME Slob
2L	12587259	2L_12587259_SNP [dm3] 2L_12587259_SNP [dm6]	T	C	1.390e^-5	0.032	UPSTREAM nub INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19718261	2L_19718261_SNP [dm3] 2L_19718261_SNP [dm6]	G	T	1.395e^-5	0.032	INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	19718291	2L_19718291_SNP [dm3] 2L_19718291_SNP [dm6]	G	A	1.395e^-5	0.032	INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	5759037	3R_5759037_SNP [dm3] 3R_9933315_SNP [dm6]	C	T	1.398e^-5	0.032	INTRON Glut4EF
3R	5769824	3R_5769824_SNP [dm3] 3R_9944102_SNP [dm6]	G	A	1.398e^-5	0.032	UTR_3_PRIME Glut4EF INTRON Glut4EF
2L	22043065	2L_22043065_SNP [dm3] 2L_22043065_SNP [dm6]	A	G	1.409e^-5	0.033	INTRON CG31601
2R	16347256	2R_16347256_SNP [dm3] 2R_20459751_SNP [dm6]	G	T	1.415e^-5	0.033	INTRON CG12484
3L	4601791	3L_4601791_SNP [dm3] 3L_4601791_SNP [dm6]	G	A	1.422e^-5	0.033	INTRON Src64B
2L	9291978	2L_9291978_SNP [dm3] 2L_9291978_SNP [dm6]	C	A	1.432e^-5	0.033	UTR_3_PRIME Ggamma30A DOWNSTREAM Ggamma30A	TF binding site mE1_TFBS_cad
2L	9399896	2L_9399896_SNP [dm3] 2L_9399896_SNP [dm6]	C	A	1.432e^-5	0.033	INTRON Shawl
2L	16483779	2L_16483779_SNP [dm3] 2L_16483779_SNP [dm6]	C	G	1.438e^-5	0.033	INTRON dac	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3490713	3L_3490713_SNP [dm3] 3L_3490713_SNP [dm6]	G	A	1.452e^-5	0.033	INTRON CG42324
2R	18749544	2R_18749544_SNP [dm3] 2R_22862021_SNP [dm6]	G	A	1.452e^-5	0.033	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16643348	3R_16643348_SNP [dm3] 3R_20817626_SNP [dm6]	C	T	1.457e^-5	0.033	INTRON CG17270
3R	6123010	3R_6123010_SNP [dm3] 3R_10297288_SNP [dm6]	A	C	1.484e^-5	0.034	INTRON CG43143
3R	22002851	3R_22002851_SNP [dm3] 3R_26177129_SNP [dm6]	C	T	1.487e^-5	0.034	INTRON CG31323
2L	19796790	2L_19796790_SNP [dm3] 2L_19796790_SNP [dm6]	G	A	1.506e^-5	0.034	UTR_5_PRIME sick UPSTREAM fs_2_ltoPP43	TF binding site BDTNP1_TFBS_dl
2R	2466625	2R_2466625_SNP [dm3] 2R_6579120_SNP [dm6]	C	A	1.509e^-5	0.034	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	22108185	2L_22108185_SNP [dm3] 2L_22108185_SNP [dm6]	A	T	1.521e^-5	0.035	UPSTREAM CG10834 & 1 other INTERGENIC
2R	18887109	2R_18887109_SNP [dm3] 2R_22999586_SNP [dm6]	G	C	1.522e^-5	0.035	UPSTREAM CG9896 INTRON twi
2R	8545811	2R_8545811_INS [dm3] 2R_12658306_INS [dm6]	A	ATTGTTGGCACTATAA...	1.536e^-5	0.035	INTRON CG8646	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17652389	2R_17652389_DEL [dm3] 2R_21764884_DEL [dm6]	AA	T	1.536e^-5	0.035	UPSTREAM CR43983 & 1 other DOWNSTREAM CR43984 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10325698	2R_10325698_SNP [dm3] 2R_14438193_SNP [dm6]	G	T	1.546e^-5	0.035	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2077402	X_2077402_SNP [dm3] X_2183369_SNP [dm6]	G	T	1.549e^-5	0.035	SYNONYMOUS_CODING Nmd3 DOWNSTREAM pn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	7757463	2R_7757463_SNP [dm3] 2R_11869958_SNP [dm6]	A	G	1.551e^-5	0.035	INTRON CG13185
3L	19177062	3L_19177062_SNP [dm3] 3L_19183962_SNP [dm6]	C	A	1.554e^-5	0.035	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2R	11608209	2R_11608209_SNP [dm3] 2R_15720704_SNP [dm6]	T	A	1.555e^-5	0.035	INTERGENIC
X	1629235	X_1629235_DEL [dm3] X_1735202_DEL [dm6]	TAACT	C	1.555e^-5	0.035	DOWNSTREAM Scgdelta INTERGENIC
3R	25165653	3R_25165653_SNP [dm3] 3R_29339931_SNP [dm6]	C	T	1.556e^-5	0.035	INTERGENIC
3R	8452180	3R_8452180_SNP [dm3] 3R_12626458_SNP [dm6]	G	T	1.558e^-5	0.035	INTRON Vha55	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	8452182	3R_8452182_SNP [dm3] 3R_12626460_SNP [dm6]	C	T	1.558e^-5	0.035	INTRON Vha55	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	19429595	2L_19429595_SNP [dm3] 2L_19429595_SNP [dm6]	T	C	1.560e^-5	0.035	NON_SYNONYMOUS_CODING CG13085 DOWNSTREAM CG16771	TF binding site mE1_TFBS_chinmo
2L	15520803	2L_15520803_SNP [dm3] 2L_15520803_SNP [dm6]	C	A	1.562e^-5	0.035	INTERGENIC
3L	6576438	3L_6576438_SNP [dm3] 3L_6583338_SNP [dm6]	C	T	1.572e^-5	0.035	INTRON CG18769 & 1 other
2L	11733222	2L_11733222_INS [dm3] 2L_11733222_INS [dm6]	T	TTTCTCTAT	1.591e^-5	0.035	INTERGENIC
3R	22986583	3R_22986583_SNP [dm3] 3R_27160861_SNP [dm6]	T	G	1.593e^-5	0.035	UPSTREAM CG5909 INTERGENIC
X	1619697	X_1619697_DEL [dm3] X_1725664_DEL [dm6]	TAGCTGCCT	T	1.605e^-5	0.036	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	8539542	2R_8539542_INS [dm3] 2R_12652037_INS [dm6]	A	ATAA	1.607e^-5	0.036	UPSTREAM ZnT49B INTRON CG8778
3L	6555599	3L_6555599_SNP [dm3] 3L_6562499_SNP [dm6]	T	A	1.611e^-5	0.036	DOWNSTREAM jv INTRON CG18769
2L	13764316	2L_13764316_SNP [dm3] 2L_13764316_SNP [dm6]	G	A	1.616e^-5	0.036	INTRON TM9SF4
2R	13215333	2R_13215333_SNP [dm3] 2R_17327828_SNP [dm6]	G	T	1.616e^-5	0.036	INTRON mbl
X	2448795	X_2448795_INS [dm3] X_2554762_INS [dm6]	C	CAACCATC	1.625e^-5	0.036	INTRON Pdfr
3L	10818513	3L_10818513_SNP [dm3] 3L_10825413_SNP [dm6]	T	C	1.641e^-5	0.036	EXON CR45246
X	6110430	X_6110430_SNP [dm3] X_6216397_SNP [dm6]	C	A	1.650e^-5	0.036	DOWNSTREAM Btd INTERGENIC
2L	13134621	2L_13134621_SNP [dm3] 2L_13134621_SNP [dm6]	C	T	1.650e^-5	0.036	SYNONYMOUS_CODING CG5122
2L	13134654	2L_13134654_SNP [dm3] 2L_13134654_SNP [dm6]	A	T	1.650e^-5	0.036	SYNONYMOUS_CODING CG5122
2L	11847566	2L_11847566_SNP [dm3] 2L_11847566_SNP [dm6]	G	A	1.653e^-5	0.036	SYNONYMOUS_CODING Mal-B1 INTRON Pde1c
2L	22062524	2L_22062524_SNP [dm3] 2L_22062524_SNP [dm6]	A	G	1.666e^-5	0.036	INTERGENIC
2L	22067349	2L_22067349_SNP [dm3] 2L_22067349_SNP [dm6]	T	A	1.666e^-5	0.036	DOWNSTREAM CR31700 INTERGENIC
X	6883081	X_6883081_SNP [dm3] X_6989048_SNP [dm6]	A	G	1.672e^-5	0.036	INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	9246595	X_9246595_DEL [dm3] X_9352562_DEL [dm6]	GTGGAGAGGGG...	G	1.673e^-5	0.036	INTRON CG34449	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12010657	2R_12010657_SNP [dm3] 2R_16123152_SNP [dm6]	G	T	1.675e^-5	0.036	UPSTREAM CG30095 DOWNSTREAM Jhe INTERGENIC
3R	25755289	3R_25755289_SNP [dm3] 3R_29929567_SNP [dm6]	T	G	1.675e^-5	0.036	NON_SYNONYMOUS_CODING CG31202 DOWNSTREAM CG15522 & 1 other
3R	25755311	3R_25755311_SNP [dm3] 3R_29929589_SNP [dm6]	A	G	1.675e^-5	0.036	SYNONYMOUS_CODING CG31202 DOWNSTREAM CG15522 & 1 other
3L	18682668	3L_18682668_SNP [dm3] 3L_18689568_SNP [dm6]	G	A	1.710e^-5	0.037	INTERGENIC
2L	2968459	2L_2968459_SNP [dm3] 2L_2968459_SNP [dm6]	A	C	1.711e^-5	0.037	UTR_3_PRIME Ts DOWNSTREAM Ts & 1 other
2R	19999759	2R_19999759_SNP [dm3] 2R_24112236_SNP [dm6]	G	A	1.727e^-5	0.037	SYNONYMOUS_CODING CG4049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22974783	3R_22974783_SNP [dm3] 3R_27149061_SNP [dm6]	A	T	1.727e^-5	0.037	INTRON CG6051	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22981839	3R_22981839_SNP [dm3] 3R_27156117_SNP [dm6]	A	G	1.727e^-5	0.037	INTRON Men-b
2R	14116309	2R_14116309_SNP [dm3] 2R_18228804_SNP [dm6]	T	G	1.733e^-5	0.037	DOWNSTREAM CR45310 EXON CR45311
2L	5496814	2L_5496814_SNP [dm3] 2L_5496814_SNP [dm6]	G	A	1.737e^-5	0.038	INTERGENIC
3L	13185056	3L_13185056_SNP [dm3] 3L_13191956_SNP [dm6]	A	C	1.739e^-5	0.038	INTERGENIC
X	2442976	X_2442976_SNP [dm3] X_2548943_SNP [dm6]	A	T	1.751e^-5	0.038	INTERGENIC
2L	7595046	2L_7595046_SNP [dm3] 2L_7595046_SNP [dm6]	G	A	1.763e^-5	0.038	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7969116	2L_7969116_SNP [dm3] 2L_7969116_SNP [dm6]	A	G	1.774e^-5	0.038	INTRON Snoo
X	19055052	X_19055052_SNP [dm3] X_19161019_SNP [dm6]	A	G	1.790e^-5	0.038	INTRON RhoGAP18B	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7127319	2L_7127319_SNP [dm3] 2L_7127319_SNP [dm6]	G	T	1.793e^-5	0.038	INTRON Pvf3	TF binding site BDTNP1_TFBS_prd
3L	10271665	3L_10271665_SNP [dm3] 3L_10278565_SNP [dm6]	G	A	1.796e^-5	0.038	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	3441326	3L_3441326_INS [dm3] 3L_3441326_INS [dm6]	C	CGTATATTTTT...	1.796e^-5	0.038	INTRON eIF5B	TF binding site mE1_TFBS_HSA
2L	13738558	2L_13738558_INS [dm3] 2L_13738558_INS [dm6]	A	AA	1.809e^-5	0.039	INTERGENIC
2R	11060216	2R_11060216_SNP [dm3] 2R_15172711_SNP [dm6]	T	C	1.815e^-5	0.039	INTRON igl	TF binding site mE1_TFBS_HSA
2L	1203424	2L_1203424_SNP [dm3] 2L_1203424_SNP [dm6]	A	G	1.820e^-5	0.039	UPSTREAM CG14342 INTERGENIC
2R	16921647	2R_16921647_SNP [dm3] 2R_21034142_SNP [dm6]	A	T	1.844e^-5	0.039	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12997173	X_12997173_DEL [dm3] X_13103140_DEL [dm6]	TACATCATGTT...	T	1.861e^-5	0.039	INTRON CG43313
2R	10325715	2R_10325715_SNP [dm3] 2R_14438210_SNP [dm6]	G	C	1.864e^-5	0.039	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23792492	3R_23792492_SNP [dm3] 3R_27966770_SNP [dm6]	T	A	1.864e^-5	0.039	NON_SYNONYMOUS_CODING CG4849 DOWNSTREAM betaTub97EF
2R	9804887	2R_9804887_SNP [dm3] 2R_13917382_SNP [dm6]	T	A	1.865e^-5	0.039	INTRON shot
2R	9806725	2R_9806725_SNP [dm3] 2R_13919220_SNP [dm6]	T	G	1.865e^-5	0.039	INTRON shot	TF binding site mE1_TFBS_Trl
2R	18775766	2R_18775766_SNP [dm3] 2R_22888243_SNP [dm6]	A	G	1.869e^-5	0.039	SYNONYMOUS_CODING Gmer UPSTREAM MED23 DOWNSTREAM asrij	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	18775966	2R_18775966_SNP [dm3] 2R_22888443_SNP [dm6]	C	T	1.869e^-5	0.039	UPSTREAM MED23 DOWNSTREAM asrij INTRON Gmer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	1938688	X_1938688_SNP [dm3] X_2044655_SNP [dm6]	G	A	1.872e^-5	0.039	UTR_3_PRIME moody UPSTREAM CG4325 INTRON CG4313
X	1938689	X_1938689_SNP [dm3] X_2044656_SNP [dm6]	G	A	1.872e^-5	0.039	UTR_3_PRIME moody UPSTREAM CG4325 INTRON CG4313
X	5741782	X_5741782_SNP [dm3] X_5847749_SNP [dm6]	A	C	1.879e^-5	0.04	INTERGENIC
3L	3837317	3L_3837317_SNP [dm3] 3L_3837317_SNP [dm6]	G	A	1.906e^-5	0.04	NON_SYNONYMOUS_CODING enc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3499726	3L_3499726_SNP [dm3] 3L_3499726_SNP [dm6]	T	C	1.926e^-5	0.04	INTRON CG42324
3L	3499728	3L_3499728_SNP [dm3] 3L_3499728_SNP [dm6]	T	A	1.926e^-5	0.04	INTRON CG42324
3L	1070548	3L_1070548_SNP [dm3] 3L_1070548_SNP [dm6]	C	T	1.928e^-5	0.04	INTRON bab1	TF binding site BDTNP1_TFBS_twi
2L	22045523	2L_22045523_SNP [dm3] 2L_22045523_SNP [dm6]	C	T	1.934e^-5	0.041	INTERGENIC
3L	11578132	3L_11578132_SNP [dm3] 3L_11585032_SNP [dm6]	A	G	1.940e^-5	0.041	UPSTREAM CG32086 INTRON rt	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	22045524	2L_22045524_SNP [dm3] 2L_22045524_SNP [dm6]	T	C	1.940e^-5	0.041	INTERGENIC
2R	8539539	2R_8539539_INS [dm3] 2R_12652034_INS [dm6]	A	ACAA	1.943e^-5	0.041	UPSTREAM ZnT49B INTRON CG8778
X	5490875	X_5490875_SNP [dm3] X_5596842_SNP [dm6]	G	A	1.948e^-5	0.041	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA
2R	8539688	2R_8539688_SNP [dm3] 2R_12652183_SNP [dm6]	G	A	1.962e^-5	0.041	SYNONYMOUS_CODING CG8778 UPSTREAM ZnT49B
2L	5915465	2L_5915465_SNP [dm3] 2L_5915465_SNP [dm6]	T	C	1.964e^-5	0.041	SYNONYMOUS_CODING bchs
2L	13439403	2L_13439403_SNP [dm3] 2L_13439403_SNP [dm6]	A	T	1.965e^-5	0.041	UTR_3_PRIME Tehao INTRON CG42784 EXON CR45683	TF binding site mE1_TFBS_cad
2L	20789742	2L_20789742_SNP [dm3] 2L_20789742_SNP [dm6]	C	T	1.979e^-5	0.041	SYNONYMOUS_CODING vari DOWNSTREAM Pomp	TF binding site mE1_TFBS_sens
2L	2184775	2L_2184775_SNP [dm3] 2L_2184775_SNP [dm6]	G	A	1.983e^-5	0.041	EXON CR43751	regulatory region REDfly_CRMs
2R	13270442	2R_13270442_SNP [dm3] 2R_17382937_SNP [dm6]	A	G	1.984e^-5	0.041	INTERGENIC
3R	2498019	3R_2498019_SNP [dm3] 3R_6672297_SNP [dm6]	T	A	1.985e^-5	0.041	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
3L	945618	3L_945618_SNP [dm3] 3L_945618_SNP [dm6]	C	T	1.994e^-5	0.041	INTRON Glut1
3R	25755333	3R_25755333_SNP [dm3] 3R_29929611_SNP [dm6]	T	C	2.001e^-5	0.041	NON_SYNONYMOUS_CODING CG31202 DOWNSTREAM CG15522 & 1 other
X	16569050	X_16569050_SNP [dm3] X_16675017_SNP [dm6]	G	C	2.003e^-5	0.041	INTRON CG13012
3L	3442177	3L_3442177_SNP [dm3] 3L_3442177_SNP [dm6]	T	A	2.022e^-5	0.042	INTRON eIF5B
X	18288831	X_18288831_SNP [dm3] X_18394798_SNP [dm6]	T	C	2.022e^-5	0.042	INTRON CG32549
X	18289002	X_18289002_SNP [dm3] X_18394969_SNP [dm6]	T	A	2.022e^-5	0.042	INTRON CG32549
X	18289093	X_18289093_SNP [dm3] X_18395060_SNP [dm6]	G	C	2.022e^-5	0.042	INTRON CG32549
2R	13852877	2R_13852877_SNP [dm3] 2R_17965372_SNP [dm6]	C	A	2.033e^-5	0.042	INTERGENIC
2L	3280132	2L_3280132_SNP [dm3] 2L_3280132_SNP [dm6]	G	A	2.036e^-5	0.042	UPSTREAM CG3332 INTRON CG3332
2L	2968439	2L_2968439_DEL [dm3] 2L_2968439_DEL [dm6]	ACTGTTTCCGTG...	A	2.037e^-5	0.042	UTR_3_PRIME Ts DOWNSTREAM Ts & 1 other
2R	17933944	2R_17933944_SNP [dm3] 2R_22046439_SNP [dm6]	T	A	2.042e^-5	0.042	INTERGENIC
3R	4986619	3R_4986619_SNP [dm3] 3R_9160897_SNP [dm6]	T	G	2.044e^-5	0.042	INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9450540	2R_9450540_SNP [dm3] 2R_13563035_SNP [dm6]	A	T	2.050e^-5	0.042	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	11368458	3R_11368458_SNP [dm3] 3R_15542736_SNP [dm6]	G	A	2.055e^-5	0.042	UPSTREAM CG18519 DOWNSTREAM CG6045 INTERGENIC	TF binding site mE1_TFBS_cad
2L	10901846	2L_10901846_SNP [dm3] 2L_10901846_SNP [dm6]	A	T	2.057e^-5	0.042	UPSTREAM CG14070 INTERGENIC	transposable element FlyBase
2R	7156815	2R_7156815_INS [dm3] 2R_11269310_INS [dm6]	A	AA	2.058e^-5	0.042	INTRON Cpr47Ef
2L	19798357	2L_19798357_SNP [dm3] 2L_19798357_SNP [dm6]	A	T	2.059e^-5	0.042	INTRON sick
2L	10352448	2L_10352448_SNP [dm3] 2L_10352448_SNP [dm6]	G	A	2.061e^-5	0.042	UPSTREAM CG34367 INTRON CG34367
2R	11413872	2R_11413872_SNP [dm3] 2R_15526367_SNP [dm6]	G	T	2.089e^-5	0.042	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15784441	2R_15784441_SNP [dm3] 2R_19896936_SNP [dm6]	G	A	2.092e^-5	0.042	DOWNSTREAM CR44572 INTERGENIC
2L	2616981	2L_2616981_SNP [dm3] 2L_2616981_SNP [dm6]	C	T	2.092e^-5	0.042	INTERGENIC
2L	9128083	2L_9128083_SNP [dm3] 2L_9128083_SNP [dm6]	A	G	2.094e^-5	0.042	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18288919	X_18288919_SNP [dm3] X_18394886_SNP [dm6]	G	T	2.102e^-5	0.042	INTRON CG32549
2L	1694489	2L_1694489_DEL [dm3] 2L_1694489_DEL [dm6]	GTGCTTG	G	2.104e^-5	0.042	INTRON chinmo	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	10783091	3L_10783091_SNP [dm3] 3L_10789991_SNP [dm6]	G	A	2.122e^-5	0.043	DOWNSTREAM CR44545 INTERGENIC
3L	10783097	3L_10783097_INS [dm3] 3L_10789997_INS [dm6]	T	TAGTTTATTAT...	2.122e^-5	0.043	DOWNSTREAM CR44545 INTERGENIC
3L	6503553	3L_6503553_SNP [dm3] 3L_6510453_SNP [dm6]	A	T	2.124e^-5	0.043	INTRON sfl
3L	6503556	3L_6503556_SNP [dm3] 3L_6510456_SNP [dm6]	G	A	2.124e^-5	0.043	INTRON sfl
3L	10781239	3L_10781239_SNP [dm3] 3L_10788139_SNP [dm6]	A	G	2.133e^-5	0.043	INTERGENIC	TF binding site mE1_TFBS_inv
X	14697195	X_14697195_SNP [dm3] X_14803162_SNP [dm6]	G	A	2.136e^-5	0.043	INTRON rut
2R	9804866	2R_9804866_SNP [dm3] 2R_13917361_SNP [dm6]	G	T	2.171e^-5	0.043	INTRON shot
2L	13771105	2L_13771105_SNP [dm3] 2L_13771105_SNP [dm6]	T	C	2.177e^-5	0.044	UTR_5_PRIME TM9SF4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	18019012	2R_18019012_SNP [dm3] 2R_22131507_SNP [dm6]	A	T	2.187e^-5	0.044	UPSTREAM CG34205 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25136124	3R_25136124_SNP [dm3] 3R_29310402_SNP [dm6]	A	G	2.188e^-5	0.044	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	22073151	2L_22073151_SNP [dm3] 2L_22073151_SNP [dm6]	C	T	2.190e^-5	0.044	DOWNSTREAM CG31702 INTERGENIC
2R	19998339	2R_19998339_SNP [dm3] 2R_24110816_SNP [dm6]	T	A	2.201e^-5	0.044	INTRON CG4049	TF binding site mE1_TFBS_cad
2L	2519592	2L_2519592_DEL [dm3] 2L_2519592_DEL [dm6]	GC	G	2.201e^-5	0.044	INTERGENIC
2L	22107893	2L_22107893_SNP [dm3] 2L_22107893_SNP [dm6]	C	T	2.202e^-5	0.044	UPSTREAM CG10834 INTERGENIC
2R	18912060	2R_18912060_SNP [dm3] 2R_23024537_SNP [dm6]	C	G	2.221e^-5	0.044	INTRON twi & 1 other
2L	5309491	2L_5309491_SNP [dm3] 2L_5309491_SNP [dm6]	G	A	2.222e^-5	0.044	NON_SYNONYMOUS_CODING vri	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3490726	3L_3490726_SNP [dm3] 3L_3490726_SNP [dm6]	A	T	2.225e^-5	0.044	INTRON CG42324
2L	13738582	2L_13738582_SNP [dm3] 2L_13738582_SNP [dm6]	T	G	2.229e^-5	0.044	INTERGENIC
2R	17958061	2R_17958061_SNP [dm3] 2R_22070556_SNP [dm6]	T	C	2.239e^-5	0.044	SYNONYMOUS_CODING CG11475 DOWNSTREAM Snp & 1 other	TF binding site mE1_TFBS_sens
2L	10200440	2L_10200440_SNP [dm3] 2L_10200440_SNP [dm6]	T	C	2.245e^-5	0.044	SYNONYMOUS_CODING Ripalpha UPSTREAM RpL7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	13185081	3L_13185081_SNP [dm3] 3L_13191981_SNP [dm6]	T	C	2.256e^-5	0.044	INTERGENIC
2R	6169842	2R_6169842_SNP [dm3] 2R_10282337_SNP [dm6]	A	T	2.286e^-5	0.045	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13137140	X_13137140_SNP [dm3] X_13243107_SNP [dm6]	T	C	2.315e^-5	0.046	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	23052964	3R_23052964_SNP [dm3] 3R_27227242_SNP [dm6]	A	G	2.333e^-5	0.046	DOWNSTREAM CG42813 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	20016534	X_20016534_SNP [dm3] X_20122501_SNP [dm6]	C	A	2.338e^-5	0.046	SYNONYMOUS_CODING CG34331
2L	13078752	2L_13078752_SNP [dm3] 2L_13078752_SNP [dm6]	C	T	2.338e^-5	0.046	INTERGENIC
3L	4831165	3L_4831165_SNP [dm3] 3L_4831165_SNP [dm6]	G	A	2.353e^-5	0.046	SYNONYMOUS_CODING CG13708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10721516	2L_10721516_SNP [dm3] 2L_10721516_SNP [dm6]	A	C	2.356e^-5	0.046	INTERGENIC
2L	22072966	2L_22072966_INS [dm3] 2L_22072966_INS [dm6]	T	TTCGATCT	2.357e^-5	0.046	DOWNSTREAM CG31702 INTERGENIC
3L	10710518	3L_10710518_SNP [dm3] 3L_10717418_SNP [dm6]	T	C	2.361e^-5	0.046	INTERGENIC
2R	16624783	2R_16624783_SNP [dm3] 2R_20737278_SNP [dm6]	G	T	2.366e^-5	0.046	INTRON dpr
3R	17880923	3R_17880923_SNP [dm3] 3R_22055201_SNP [dm6]	T	C	2.371e^-5	0.046	INTRON how
3L	3490811	3L_3490811_SNP [dm3] 3L_3490811_SNP [dm6]	A	T	2.372e^-5	0.046	INTRON CG42324
2R	2717250	2R_2717250_SNP [dm3] 2R_6829745_SNP [dm6]	G	A	2.373e^-5	0.046	UTR_5_PRIME CG15236	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18772061	2R_18772061_SNP [dm3] 2R_22884538_SNP [dm6]	C	A	2.381e^-5	0.046	SYNONYMOUS_CODING CG3499	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	18269128	3L_18269128_SNP [dm3] 3L_18276028_SNP [dm6]	G	A	2.388e^-5	0.046	INTERGENIC
2L	8202885	2L_8202885_SNP [dm3] 2L_8202885_SNP [dm6]	G	A	2.392e^-5	0.046	INTRON SLC5A11 EXON CR44119
2R	19661127	2R_19661127_SNP [dm3] 2R_23773604_SNP [dm6]	C	T	2.393e^-5	0.046	INTRON CG9850
2R	13270602	2R_13270602_SNP [dm3] 2R_17383097_SNP [dm6]	T	A	2.403e^-5	0.046	INTERGENIC
2L	10200384	2L_10200384_SNP [dm3] 2L_10200384_SNP [dm6]	T	A	2.403e^-5	0.046	UPSTREAM RpL7 INTRON Ripalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	10200395	2L_10200395_SNP [dm3] 2L_10200395_SNP [dm6]	G	T	2.403e^-5	0.046	UPSTREAM RpL7 INTRON Ripalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	9626792	2L_9626792_SNP [dm3] 2L_9626792_SNP [dm6]	C	T	2.405e^-5	0.046	INTERGENIC
3L	6292507	3L_6292507_SNP [dm3] 3L_6299407_SNP [dm6]	T	G	2.412e^-5	0.046	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9988962	3R_9988962_SNP [dm3] 3R_14163240_SNP [dm6]	C	T	2.438e^-5	0.047	SYNONYMOUS_CODING CG3199
X	12325368	X_12325368_SNP [dm3] X_12431335_SNP [dm6]	G	A	2.439e^-5	0.047	UPSTREAM Pkcdelta INTERGENIC
2L	4329875	2L_4329875_SNP [dm3] 2L_4329875_SNP [dm6]	C	T	2.448e^-5	0.047	SYNONYMOUS_CODING CG16857
2L	1333048	2L_1333048_SNP [dm3] 2L_1333048_SNP [dm6]	C	T	2.487e^-5	0.048	INTERGENIC
2R	18741631	2R_18741631_INS [dm3] 2R_22854108_INS [dm6]	G	GAT	2.497e^-5	0.048	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	18741662	2R_18741662_SNP [dm3] 2R_22854139_SNP [dm6]	A	G	2.497e^-5	0.048	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2616962	2L_2616962_SNP [dm3] 2L_2616962_SNP [dm6]	G	T	2.503e^-5	0.048	INTERGENIC
2L	12809336	2L_12809336_SNP [dm3] 2L_12809336_SNP [dm6]	A	G	2.510e^-5	0.048	UPSTREAM CR43818 INTERGENIC
2L	22055381	2L_22055381_SNP [dm3] 2L_22055381_SNP [dm6]	A	G	2.511e^-5	0.048	INTERGENIC
2L	18479399	2L_18479399_SNP [dm3] 2L_18479399_SNP [dm6]	G	T	2.531e^-5	0.048	INTRON CG10283
2L	11011755	2L_11011755_SNP [dm3] 2L_11011755_SNP [dm6]	C	T	2.540e^-5	0.048	SYNONYMOUS_CODING dUTPase UPSTREAM Art8 DOWNSTREAM Nup154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	6501883	3L_6501883_SNP [dm3] 3L_6508783_SNP [dm6]	G	A	2.541e^-5	0.048	INTRON sfl
3R	10351106	3R_10351106_SNP [dm3] 3R_14525384_SNP [dm6]	G	A	2.548e^-5	0.048	SYNONYMOUS_CODING Pde6
3R	11356804	3R_11356804_SNP [dm3] 3R_15531082_SNP [dm6]	G	A	2.555e^-5	0.049	NON_SYNONYMOUS_CODING CG31296
3R	20888050	3R_20888050_SNP [dm3] 3R_25062328_SNP [dm6]	T	G	2.572e^-5	0.049	INTRON Unc-13-4B
3R	8221282	3R_8221282_SNP [dm3] 3R_12395560_SNP [dm6]	A	C	2.585e^-5	0.049	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
X	5903301	X_5903301_SNP [dm3] X_6009268_SNP [dm6]	G	A	2.597e^-5	0.049	INTRON mab-21
2R	16770955	2R_16770955_SNP [dm3] 2R_20883450_SNP [dm6]	T	G	2.601e^-5	0.049	DOWNSTREAM otp & 1 other INTERGENIC
X	3160300	X_3160300_SNP [dm3] X_3266267_SNP [dm6]	C	T	2.602e^-5	0.049	INTRON dnc
2L	4513517	2L_4513517_SNP [dm3] 2L_4513517_SNP [dm6]	T	G	2.604e^-5	0.049	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8452150	3R_8452150_SNP [dm3] 3R_12626428_SNP [dm6]	C	T	2.607e^-5	0.049	INTRON Vha55	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	4047317	X_4047317_SNP [dm3] X_4153284_SNP [dm6]	C	A	2.607e^-5	0.049	INTRON Fas2
2L	1659805	2L_1659805_SNP [dm3] 2L_1659805_SNP [dm6]	T	A	2.638e^-5	0.05	INTRON chinmo
2R	19993238	2R_19993238_SNP [dm3] 2R_24105715_SNP [dm6]	C	A	2.662e^-5	0.05	INTRON enok	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5309894	2L_5309894_DEL [dm3] 2L_5309894_DEL [dm6]	TT	T	2.673e^-5	0.05	UTR_3_PRIME vri	TF binding site mE1_TFBS_chinmo
X	16667178	X_16667178_SNP [dm3] X_16773145_SNP [dm6]	C	A	2.691e^-5	0.05	INTRON if	TF binding site BDTNP1_TFBS_da
2L	3285093	2L_3285093_SNP [dm3] 2L_3285093_SNP [dm6]	G	T	2.708e^-5	0.051	INTERGENIC
2L	19285075	2L_19285075_DEL [dm3] 2L_19285075_DEL [dm6]	GG	G	2.712e^-5	0.051	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	16926515	X_16926515_SNP [dm3] X_17032482_SNP [dm6]	A	T	2.715e^-5	0.051	SYNONYMOUS_CODING CG45002 INTRON CG45002
2L	1694474	2L_1694474_SNP [dm3] 2L_1694474_SNP [dm6]	C	T	2.720e^-5	0.051	INTRON chinmo	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	1694483	2L_1694483_SNP [dm3] 2L_1694483_SNP [dm6]	C	A	2.720e^-5	0.051	INTRON chinmo	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	7760616	2R_7760616_SNP [dm3] 2R_11873111_SNP [dm6]	T	C	2.723e^-5	0.051	SYNONYMOUS_CODING CG13185
3R	6296073	3R_6296073_INS [dm3] 3R_10470351_INS [dm6]	A	ACTATAAGTCAATC...	2.746e^-5	0.051	INTERGENIC
2L	22070746	2L_22070746_SNP [dm3] 2L_22070746_SNP [dm6]	G	T	2.763e^-5	0.051	UPSTREAM CG31702 INTERGENIC	transposable element FlyBase

By genomic position
Variant impact
Gene name

Microbiota_OTU154 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results