DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.501e^-13)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.05716

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	5.625	0.0601

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

5258 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	10957741	X_10957741_DEL [dm3] X_11063708_DEL [dm6]	TGCA	T	4.529e^-20	7.122e^-14	UPSTREAM CG1537 INTERGENIC
2R	9802372	2R_9802372_SNP [dm3] 2R_13914867_SNP [dm6]	A	T	7.657e^-20	7.122e^-14	INTRON shot
X	10957685	X_10957685_SNP [dm3] X_11063652_SNP [dm6]	G	A	3.334e^-17	2.068e^-11	UPSTREAM CG1537 INTERGENIC
X	14954380	X_14954380_SNP [dm3] X_15060347_SNP [dm6]	T	A	9.421e^-17	3.751e^-11	SYNONYMOUS_CODING hiw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10957751	X_10957751_SNP [dm3] X_11063718_SNP [dm6]	C	G	1.008e^-16	3.751e^-11	UPSTREAM CG1537 INTERGENIC
3R	2516927	3R_2516927_SNP [dm3] 3R_6691205_SNP [dm6]	T	A	2.049e^-15	6.352e^-10	SYNONYMOUS_CODING Ccp84Ae UPSTREAM Ccp84Af
X	10957965	X_10957965_SNP [dm3] X_11063932_SNP [dm6]	T	C	1.585e^-14	4.213e^-9	UPSTREAM CG1537 INTERGENIC
3R	5465852	3R_5465852_SNP [dm3] 3R_9640130_SNP [dm6]	G	A	6.109e^-14	1.421e^-8	UPSTREAM Dh44 INTRON Dh44
3L	24109846	3L_24109846_DEL [dm3] 3L_24116746_DEL [dm6]	TACC	T	2.291e^-13	4.736e^-8	INTRON Snap25
3L	24109851	3L_24109851_DEL [dm3] 3L_24116751_DEL [dm6]	CCCA	C	4.466e^-13	7.553e^-8	INTRON Snap25
3L	24109857	3L_24109857_DEL [dm3] 3L_24116757_DEL [dm6]	AGCGC	A	4.466e^-13	7.553e^-8	INTRON Snap25
2R	6825911	2R_6825911_SNP [dm3] 2R_10938406_SNP [dm6]	C	T	2.875e^-12	4.385e^-7	DOWNSTREAM Spn47C INTERGENIC
X	19721676	X_19721676_SNP [dm3] X_19827643_SNP [dm6]	C	A	4.254e^-12	4.385e^-7	INTERGENIC
2L	9420280	2L_9420280_SNP [dm3] 2L_9420280_SNP [dm6]	A	T	4.335e^-12	4.385e^-7	INTRON Mco1
2R	9802355	2R_9802355_DEL [dm3] 2R_13914850_DEL [dm6]	GAG	G	4.410e^-12	4.385e^-7	INTRON shot
2L	4165316	2L_4165316_SNP [dm3] 2L_4165316_SNP [dm6]	T	C	4.447e^-12	4.385e^-7	SYNONYMOUS_CODING Or24a
X	10957731	X_10957731_SNP [dm3] X_11063698_SNP [dm6]	G	C	4.470e^-12	4.385e^-7	UPSTREAM CG1537 INTERGENIC
X	10957738	X_10957738_MNP [dm3] X_11063705_MNP [dm6]	GCT	AAA	4.470e^-12	4.385e^-7	UPSTREAM CG1537 INTERGENIC
2R	900208	2R_900208_DEL [dm3] 2R_5012703_DEL [dm6]	AT	A	4.478e^-12	4.385e^-7	INTRON Ir41a	transposable element FlyBase
2L	9419771	2L_9419771_SNP [dm3] 2L_9419771_SNP [dm6]	T	A	6.266e^-12	5.544e^-7	INTRON Mco1
2L	9419854	2L_9419854_SNP [dm3] 2L_9419854_SNP [dm6]	A	T	6.266e^-12	5.544e^-7	INTRON Mco1
X	10957721	X_10957721_SNP [dm3] X_11063688_SNP [dm6]	A	C	6.556e^-12	5.544e^-7	UPSTREAM CG1537 INTERGENIC
X	12997588	X_12997588_SNP [dm3] X_13103555_SNP [dm6]	G	C	9.180e^-12	7.107e^-7	INTRON CG43313
X	2388150	X_2388150_SNP [dm3] X_2494117_SNP [dm6]	T	C	9.519e^-12	7.107e^-7	INTRON trol
X	10957728	X_10957728_SNP [dm3] X_11063695_SNP [dm6]	A	G	9.549e^-12	7.107e^-7	UPSTREAM CG1537 INTERGENIC
2R	9652382	2R_9652382_SNP [dm3] 2R_13764877_SNP [dm6]	G	T	1.001e^-11	7.162e^-7	INTERGENIC
2L	8856431	2L_8856431_SNP [dm3] 2L_8856431_SNP [dm6]	G	A	1.213e^-11	8.359e^-7	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	3091303	2R_3091303_SNP [dm3] 2R_7203798_SNP [dm6]	G	T	1.401e^-11	9.310e^-7	INTRON pk
X	2388012	X_2388012_SNP [dm3] X_2493979_SNP [dm6]	A	G	1.465e^-11	9.400e^-7	INTRON trol
2R	11693784	2R_11693784_SNP [dm3] 2R_15806279_SNP [dm6]	G	C	1.993e^-11	1.236e^-6	INTRON tun & 1 other
2L	8847267	2L_8847267_SNP [dm3] 2L_8847267_SNP [dm6]	C	G	2.895e^-11	1.737e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2R	9403418	2R_9403418_SNP [dm3] 2R_13515913_SNP [dm6]	C	T	3.197e^-11	1.859e^-6	SYNONYMOUS_CODING CG13330 UTR_3_PRIME Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	125913	3L_125913_DEL [dm3] 3L_125913_DEL [dm6]	AAAC	A	3.425e^-11	1.931e^-6	UPSTREAM CR45401 DOWNSTREAM CR45402 INTERGENIC
2R	11696133	2R_11696133_SNP [dm3] 2R_15808628_SNP [dm6]	G	A	3.531e^-11	1.932e^-6	INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1371173	2L_1371173_SNP [dm3] 2L_1371173_SNP [dm6]	C	T	4.628e^-11	2.460e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_Med
2L	4110394	2L_4110394_SNP [dm3] 2L_4110394_SNP [dm6]	A	T	7.092e^-11	3.665e^-6	INTRON ed
3L	15486719	3L_15486719_SNP [dm3] 3L_15493619_SNP [dm6]	A	T	7.790e^-11	3.917e^-6	INTRON CG12355	TF binding site mE1_TFBS_Trl
2R	18080405	2R_18080405_DEL [dm3] 2R_22192900_DEL [dm6]	AGCCACAGA	A	9.830e^-11	4.813e^-6	INTRON Swim
3L	11794843	3L_11794843_INS [dm3] 3L_11801743_INS [dm6]	T	TATTATATATATAT...	1.298e^-10	6.194e^-6	UPSTREAM CG10361 & 1 other DOWNSTREAM CG42255 INTERGENIC
X	10957265	X_10957265_INS [dm3] X_11063232_INS [dm6]	T	TCTGCATCT	1.897e^-10	8.822e^-6	UPSTREAM CG1537 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7363731	2L_7363731_DEL [dm3] 2L_7363731_DEL [dm6]	TTAAGGTTGTCTATATT...	T	2.538e^-10	1.152e^-5	SPLICE_SITE_DONOR Wnt10 SPLICE_SITE_REGION Wnt10 UTR_5_PRIME Wnt10 INTRON Wnt10 INTRAGENIC Wnt10
3L	23294962	3L_23294962_SNP [dm3] 3L_23301862_SNP [dm6]	T	A	2.744e^-10	1.215e^-5	INTERGENIC	transposable element FlyBase
2L	11427661	2L_11427661_SNP [dm3] 2L_11427661_SNP [dm6]	G	T	3.128e^-10	1.293e^-5	INTERGENIC
2R	3814257	2R_3814257_SNP [dm3] 2R_7926752_SNP [dm6]	T	C	3.128e^-10	1.293e^-5	SYNONYMOUS_CODING CG8791 UPSTREAM CG8791
3L	9051175	3L_9051175_SNP [dm3] 3L_9058075_SNP [dm6]	G	A	3.128e^-10	1.293e^-5	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	1490386	3L_1490386_DEL [dm3] 3L_1490386_DEL [dm6]	CACACGATTTTTTGGC...	C	3.304e^-10	1.336e^-5	UPSTREAM stet DOWNSTREAM CG12084 INTERGENIC	TF binding site mE1_TFBS_sbb transposable element FlyBase
2L	13191642	2L_13191642_SNP [dm3] 2L_13191642_SNP [dm6]	G	T	4.021e^-10	1.592e^-5	UPSTREAM Edem2 INTRON CG16974	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3810089	2R_3810089_SNP [dm3] 2R_7922584_SNP [dm6]	T	C	4.303e^-10	1.609e^-5	START_GAINED Or43b UTR_5_PRIME Or43b DOWNSTREAM Kdm4A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25368027	3R_25368027_SNP [dm3] 3R_29542305_SNP [dm6]	A	G	4.392e^-10	1.609e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
X	17073019	X_17073019_SNP [dm3] X_17178986_SNP [dm6]	C	A	4.392e^-10	1.609e^-5	INTRON baz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16694461	2L_16694461_SNP [dm3] 2L_16694461_SNP [dm6]	C	A	4.411e^-10	1.609e^-5	INTRON grp
2L	4108538	2L_4108538_SNP [dm3] 2L_4108538_SNP [dm6]	A	G	5.935e^-10	2.123e^-5	INTRON ed
X	13522808	X_13522808_SNP [dm3] X_13628775_SNP [dm6]	T	G	9.841e^-10	3.455e^-5	INTRON NFAT
2L	8232101	2L_8232101_SNP [dm3] 2L_8232101_SNP [dm6]	G	A	1.136e^-9	3.913e^-5	INTRON Pvr
3R	5441324	3R_5441324_SNP [dm3] 3R_9615602_SNP [dm6]	A	C	1.231e^-9	4.166e^-5	INTRON CG8312	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	21468344	3L_21468344_SNP [dm3] 3L_21475244_SNP [dm6]	C	A	1.291e^-9	4.290e^-5	SYNONYMOUS_CODING croc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16688783	2L_16688783_SNP [dm3] 2L_16688783_SNP [dm6]	A	T	1.388e^-9	4.532e^-5	INTRON grp	TF binding site BDTNP1_TFBS_twi
2R	17539	2R_17539_SNP [dm3] 2R_4130034_SNP [dm6]	C	T	1.498e^-9	4.805e^-5	UPSTREAM CG17683 INTERGENIC
2R	1308684	2R_1308684_SNP [dm3] 2R_5421179_SNP [dm6]	G	T	1.573e^-9	4.960e^-5	INTRON laccase2	transposable element FlyBase
2L	1286280	2L_1286280_SNP [dm3] 2L_1286280_SNP [dm6]	C	T	1.697e^-9	5.202e^-5	SYNONYMOUS_CODING robo3	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	21194704	3L_21194704_SNP [dm3] 3L_21201604_SNP [dm6]	G	T	1.706e^-9	5.202e^-5	UPSTREAM CG33056 INTRON CG33054 & 1 other
2L	7138152	2L_7138152_SNP [dm3] 2L_7138152_SNP [dm6]	G	T	2.182e^-9	6.548e^-5	INTRON Pvf3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2347970	3R_2347970_SNP [dm3] 3R_6522248_SNP [dm6]	G	A	2.360e^-9	6.970e^-5	INTERGENIC
3L	21713207	3L_21713207_SNP [dm3] 3L_21720107_SNP [dm6]	C	G	2.408e^-9	6.999e^-5	INTERGENIC
2R	10037	2R_10037_SNP [dm3] 2R_4122532_SNP [dm6]	A	C	2.482e^-9	7.104e^-5	INTERGENIC
3L	21429169	3L_21429169_SNP [dm3] 3L_21436069_SNP [dm6]	T	G	2.607e^-9	7.243e^-5	INTRON Aef1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14262884	2R_14262884_SNP [dm3] 2R_18375379_SNP [dm6]	C	T	2.608e^-9	7.243e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	21762081	3L_21762081_SNP [dm3] 3L_21768981_SNP [dm6]	A	G	2.909e^-9	7.911e^-5	UPSTREAM CG7370 INTRON Syn1 & 1 other
2R	7138880	2R_7138880_SNP [dm3] 2R_11251375_SNP [dm6]	A	C	2.934e^-9	7.911e^-5	SYNONYMOUS_CODING Or47a DOWNSTREAM Cpr47Ea	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11302175	2L_11302175_SNP [dm3] 2L_11302175_SNP [dm6]	T	C	3.821e^-9	1.016e^-4	INTERGENIC
X	15997076	X_15997076_INS [dm3] X_16103043_INS [dm6]	T	TT	4.666e^-9	1.223e^-4	UTR_5_PRIME CG42353 & 1 other INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	14537876	2R_14537876_SNP [dm3] 2R_18650371_SNP [dm6]	G	A	4.865e^-9	1.257e^-4	INTRON SP2637
2L	8871097	2L_8871097_SNP [dm3] 2L_8871097_SNP [dm6]	C	T	5.178e^-9	1.320e^-4	INTERGENIC
3L	9059614	3L_9059614_SNP [dm3] 3L_9066514_SNP [dm6]	C	A	5.544e^-9	1.380e^-4	UPSTREAM Argk DOWNSTREAM CG4911 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	17614549	2R_17614549_SNP [dm3] 2R_21727044_SNP [dm6]	C	G	5.563e^-9	1.380e^-4	DOWNSTREAM CR44750 INTERGENIC	transposable element FlyBase
2R	17398110	2R_17398110_SNP [dm3] 2R_21510605_SNP [dm6]	G	A	7.234e^-9	1.748e^-4	INTRON MESK2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18030699	2R_18030699_DEL [dm3] 2R_22143194_DEL [dm6]	CATTTTCATGAAAA...	C	7.234e^-9	1.748e^-4	INTRON a	TF binding site BDTNP1_TFBS_twi
2L	9422410	2L_9422410_SNP [dm3] 2L_9422410_SNP [dm6]	A	G	7.996e^-9	1.846e^-4	INTRON Mco1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	10957664	X_10957664_INS [dm3] X_11063631_INS [dm6]	T	TTT	8.432e^-9	1.846e^-4	UPSTREAM CG1537 INTERGENIC
X	10957699	X_10957699_SNP [dm3] X_11063666_SNP [dm6]	T	A	8.432e^-9	1.846e^-4	UPSTREAM CG1537 INTERGENIC
X	10957704	X_10957704_SNP [dm3] X_11063671_SNP [dm6]	C	T	8.432e^-9	1.846e^-4	UPSTREAM CG1537 INTERGENIC
X	10957709	X_10957709_SNP [dm3] X_11063676_SNP [dm6]	G	A	8.432e^-9	1.846e^-4	UPSTREAM CG1537 INTERGENIC
X	10957719	X_10957719_SNP [dm3] X_11063686_SNP [dm6]	C	T	8.432e^-9	1.846e^-4	UPSTREAM CG1537 INTERGENIC
X	10957723	X_10957723_DEL [dm3] X_11063690_DEL [dm6]	AAA	A	8.432e^-9	1.846e^-4	UPSTREAM CG1537 INTERGENIC
X	10957727	X_10957727_SNP [dm3] X_11063694_SNP [dm6]	A	T	8.432e^-9	1.846e^-4	UPSTREAM CG1537 INTERGENIC
2R	18030735	2R_18030735_SNP [dm3] 2R_22143230_SNP [dm6]	G	C	9.327e^-9	2.018e^-4	INTRON a	TF binding site BDTNP1_TFBS_twi
2L	10443746	2L_10443746_SNP [dm3] 2L_10443746_SNP [dm6]	T	C	1.030e^-8	2.136e^-4	INTRON loh	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9426054	2L_9426054_SNP [dm3] 2L_9426054_SNP [dm6]	G	T	1.047e^-8	2.136e^-4	NON_SYNONYMOUS_CODING Mco1 UPSTREAM Fbp2
2R	10350657	2R_10350657_SNP [dm3] 2R_14463152_SNP [dm6]	G	A	1.066e^-8	2.136e^-4	SYNONYMOUS_CODING Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10350658	2R_10350658_SNP [dm3] 2R_14463153_SNP [dm6]	G	A	1.066e^-8	2.136e^-4	NON_SYNONYMOUS_CODING Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8174188	2R_8174188_SNP [dm3] 2R_12286683_SNP [dm6]	C	G	1.066e^-8	2.136e^-4	INTRON CG42700
X	5903923	X_5903923_SNP [dm3] X_6009890_SNP [dm6]	T	A	1.066e^-8	2.136e^-4	INTRON mab-21
2L	10872248	2L_10872248_SNP [dm3] 2L_10872248_SNP [dm6]	C	T	1.068e^-8	2.136e^-4	EXON CR45454
X	10957662	X_10957662_SNP [dm3] X_11063629_SNP [dm6]	A	G	1.113e^-8	2.202e^-4	UPSTREAM CG1537 INTERGENIC
2L	9439997	2L_9439997_DEL [dm3] 2L_9439997_DEL [dm6]	TAGTAACTTATAATTTAGAA...	T	1.188e^-8	2.326e^-4	DOWNSTREAM CG33723 INTRON numb
2R	19993383	2R_19993383_SNP [dm3] 2R_24105860_SNP [dm6]	C	T	1.237e^-8	2.397e^-4	NON_SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4799946	2L_4799946_SNP [dm3] 2L_4799946_SNP [dm6]	A	T	1.285e^-8	2.464e^-4	INTRON Clect27	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17812295	2R_17812295_SNP [dm3] 2R_21924790_SNP [dm6]	G	A	1.361e^-8	2.584e^-4	INTRON Fili
3L	12473709	3L_12473709_SNP [dm3] 3L_12480609_SNP [dm6]	C	A	1.549e^-8	2.911e^-4	INTRON CG10663
X	10867624	X_10867624_INS [dm3] X_10973591_INS [dm6]	G	GCGAG	1.612e^-8	2.999e^-4	INTRON CG42339
2L	16688818	2L_16688818_SNP [dm3] 2L_16688818_SNP [dm6]	A	C	1.748e^-8	3.167e^-4	INTRON grp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8871124	2L_8871124_SNP [dm3] 2L_8871124_SNP [dm6]	G	T	1.810e^-8	3.167e^-4	INTERGENIC
2L	9225749	2L_9225749_SNP [dm3] 2L_9225749_SNP [dm6]	G	T	1.828e^-8	3.167e^-4	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	4337127	2L_4337127_SNP [dm3] 2L_4337127_SNP [dm6]	C	T	1.906e^-8	3.167e^-4	INTRON Atet	TF binding site BDTNP1_TFBS_da
2L	4338949	2L_4338949_SNP [dm3] 2L_4338949_SNP [dm6]	T	C	1.906e^-8	3.167e^-4	UTR_5_PRIME Atet INTRON Atet	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	4339710	2L_4339710_SNP [dm3] 2L_4339710_SNP [dm6]	T	A	1.906e^-8	3.167e^-4	INTRON Atet	TF binding site mE1_TFBS_inv
2L	4339715	2L_4339715_SNP [dm3] 2L_4339715_SNP [dm6]	A	T	1.906e^-8	3.167e^-4	INTRON Atet	TF binding site mE1_TFBS_inv
2R	16350905	2R_16350905_SNP [dm3] 2R_20463400_SNP [dm6]	A	T	1.906e^-8	3.167e^-4	INTRON CG12484
X	12517036	X_12517036_SNP [dm3] X_12623003_SNP [dm6]	C	A	1.906e^-8	3.167e^-4	DOWNSTREAM CR44568 INTERGENIC	TF binding site mE1_TFBS_HSA
X	14947510	X_14947510_SNP [dm3] X_15053477_SNP [dm6]	T	C	1.906e^-8	3.167e^-4	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14949378	X_14949378_SNP [dm3] X_15055345_SNP [dm6]	A	T	1.906e^-8	3.167e^-4	INTRON hiw
X	14951095	X_14951095_SNP [dm3] X_15057062_SNP [dm6]	A	G	1.906e^-8	3.167e^-4	INTRON hiw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1623758	2L_1623758_SNP [dm3] 2L_1623758_SNP [dm6]	G	A	1.925e^-8	3.170e^-4	UPSTREAM CR44603 EXON CR44603
2L	9446239	2L_9446239_SNP [dm3] 2L_9446239_SNP [dm6]	A	T	1.964e^-8	3.206e^-4	INTRON numb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12899782	X_12899782_SNP [dm3] X_13005749_SNP [dm6]	A	T	2.199e^-8	3.558e^-4	UPSTREAM CG15719 INTRON rad
X	11883633	X_11883633_SNP [dm3] X_11989600_SNP [dm6]	A	C	2.249e^-8	3.607e^-4	UPSTREAM tsg DOWNSTREAM CG18130 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	4339720	2L_4339720_SNP [dm3] 2L_4339720_SNP [dm6]	A	C	2.414e^-8	3.802e^-4	INTRON Atet	TF binding site mE1_TFBS_inv
X	10955976	X_10955976_SNP [dm3] X_11061943_SNP [dm6]	A	G	2.464e^-8	3.802e^-4	DOWNSTREAM CG1537 INTERGENIC
X	10956025	X_10956025_SNP [dm3] X_11061992_SNP [dm6]	A	C	2.464e^-8	3.802e^-4	DOWNSTREAM CG1537 INTERGENIC
X	15462214	X_15462214_SNP [dm3] X_15568181_SNP [dm6]	A	C	2.464e^-8	3.802e^-4	UPSTREAM CG7860 INTERGENIC
2R	2082433	2R_2082433_SNP [dm3] 2R_6194928_SNP [dm6]	G	C	2.473e^-8	3.802e^-4	INTRON Ptr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	19445545	X_19445545_SNP [dm3] X_19551512_SNP [dm6]	G	T	2.520e^-8	3.842e^-4	UPSTREAM mir-973 & 1 other DOWNSTREAM mir-972 INTERGENIC
2L	19881140	2L_19881140_SNP [dm3] 2L_19881140_SNP [dm6]	A	G	2.768e^-8	4.187e^-4	INTRON sick
2L	1286229	2L_1286229_SNP [dm3] 2L_1286229_SNP [dm6]	C	T	2.802e^-8	4.204e^-4	SYNONYMOUS_CODING robo3	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	11733966	X_11733966_SNP [dm3] X_11839933_SNP [dm6]	C	T	2.952e^-8	4.394e^-4	SYNONYMOUS_CODING Cyp28c1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12966228	X_12966228_SNP [dm3] X_13072195_SNP [dm6]	A	G	3.013e^-8	4.448e^-4	INTRON rad
2R	8967925	2R_8967925_SNP [dm3] 2R_13080420_SNP [dm6]	A	G	3.082e^-8	4.516e^-4	UPSTREAM Drl-2 INTERGENIC
X	11850522	X_11850522_SNP [dm3] X_11956489_SNP [dm6]	A	T	3.256e^-8	4.647e^-4	INTRON cac
X	12679320	X_12679320_SNP [dm3] X_12785287_SNP [dm6]	A	T	3.256e^-8	4.647e^-4	UPSTREAM CG32647 DOWNSTREAM Pde9 INTERGENIC
2R	9964703	2R_9964703_SNP [dm3] 2R_14077198_SNP [dm6]	G	A	3.268e^-8	4.647e^-4	INTRON Prosap
2L	16727448	2L_16727448_SNP [dm3] 2L_16727448_SNP [dm6]	C	T	3.272e^-8	4.647e^-4	SYNONYMOUS_CODING VhaSFD DOWNSTREAM CR43671	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	763207	3L_763207_SNP [dm3] 3L_763207_SNP [dm6]	C	A	3.315e^-8	4.663e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14964247	X_14964247_SNP [dm3] X_15070214_SNP [dm6]	A	G	3.334e^-8	4.663e^-4	UTR_3_PRIME Lsd-2
X	13522831	X_13522831_SNP [dm3] X_13628798_SNP [dm6]	A	G	3.645e^-8	5.061e^-4	INTRON NFAT
X	10807370	X_10807370_SNP [dm3] X_10913337_SNP [dm6]	T	G	4.031e^-8	5.555e^-4	INTRON CG43901
X	11326196	X_11326196_SNP [dm3] X_11432163_SNP [dm6]	T	C	4.208e^-8	5.748e^-4	UTR_3_PRIME Evi5
X	10957260	X_10957260_SNP [dm3] X_11063227_SNP [dm6]	G	C	4.264e^-8	5.748e^-4	UPSTREAM CG1537 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	10957262	X_10957262_SNP [dm3] X_11063229_SNP [dm6]	A	G	4.264e^-8	5.748e^-4	UPSTREAM CG1537 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	5472884	3R_5472884_SNP [dm3] 3R_9647162_SNP [dm6]	T	C	4.344e^-8	5.815e^-4	INTRON Dh44
3R	5472937	3R_5472937_SNP [dm3] 3R_9647215_SNP [dm6]	G	A	4.493e^-8	5.971e^-4	INTRON Dh44
3L	16701502	3L_16701502_SNP [dm3] 3L_16708402_SNP [dm6]	C	A	4.670e^-8	6.162e^-4	INTRON Lasp & 1 other
3L	1943748	3L_1943748_SNP [dm3] 3L_1943748_SNP [dm6]	A	G	4.828e^-8	6.243e^-4	DOWNSTREAM Mfap1 INTRON mu2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5475718	3R_5475718_SNP [dm3] 3R_9649996_SNP [dm6]	G	A	4.878e^-8	6.243e^-4	UTR_3_PRIME Dh44
X	13546773	X_13546773_SNP [dm3] X_13652740_SNP [dm6]	T	A	4.903e^-8	6.243e^-4	INTRON NFAT	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	13546786	X_13546786_SNP [dm3] X_13652753_SNP [dm6]	A	C	4.903e^-8	6.243e^-4	INTRON NFAT	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	15772221	2R_15772221_SNP [dm3] 2R_19884716_SNP [dm6]	T	G	4.932e^-8	6.243e^-4	INTERGENIC
2R	2474052	2R_2474052_SNP [dm3] 2R_6586547_SNP [dm6]	A	G	4.933e^-8	6.243e^-4	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	11303297	2L_11303297_SNP [dm3] 2L_11303297_SNP [dm6]	T	A	5.013e^-8	6.302e^-4	INTERGENIC
3R	10609797	3R_10609797_SNP [dm3] 3R_14784075_SNP [dm6]	A	C	5.099e^-8	6.367e^-4	INTRON jvl
2L	3590794	2L_3590794_INS [dm3] 2L_3590794_INS [dm6]	G	GGA	5.144e^-8	6.380e^-4	UPSTREAM CR43823 INTERGENIC
3R	5465830	3R_5465830_SNP [dm3] 3R_9640108_SNP [dm6]	G	A	5.328e^-8	6.565e^-4	UPSTREAM Dh44 INTRON Dh44
3R	5464454	3R_5464454_SNP [dm3] 3R_9638732_SNP [dm6]	C	T	5.800e^-8	7.099e^-4	INTRON Dh44
X	13546673	X_13546673_SNP [dm3] X_13652640_SNP [dm6]	A	G	6.000e^-8	7.296e^-4	INTRON NFAT	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	11756247	X_11756247_SNP [dm3] X_11862214_SNP [dm6]	A	G	6.042e^-8	7.300e^-4	SYNONYMOUS_CODING ATP7	TF binding site mE1_TFBS_chinmo
X	13546822	X_13546822_SNP [dm3] X_13652789_SNP [dm6]	A	T	6.245e^-8	7.439e^-4	INTRON NFAT	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15772185	2R_15772185_SNP [dm3] 2R_19884680_SNP [dm6]	T	C	6.277e^-8	7.439e^-4	INTERGENIC
2R	15772190	2R_15772190_SNP [dm3] 2R_19884685_SNP [dm6]	T	C	6.277e^-8	7.439e^-4	INTERGENIC
2L	16395456	2L_16395456_SNP [dm3] 2L_16395456_SNP [dm6]	G	C	6.745e^-8	7.942e^-4	INTERGENIC
2R	17870323	2R_17870323_SNP [dm3] 2R_21982818_SNP [dm6]	G	T	6.837e^-8	8.000e^-4	INTERGENIC
2L	4329875	2L_4329875_SNP [dm3] 2L_4329875_SNP [dm6]	C	T	7.124e^-8	8.284e^-4	SYNONYMOUS_CODING CG16857
2L	9417360	2L_9417360_SNP [dm3] 2L_9417360_SNP [dm6]	A	G	8.021e^-8	9.269e^-4	INTRON Mco1
X	10830170	X_10830170_SNP [dm3] X_10936137_SNP [dm6]	C	T	8.318e^-8	9.553e^-4	INTRON Myo10A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6606034	2L_6606034_SNP [dm3] 2L_6606034_SNP [dm6]	C	T	8.732e^-8	9.966e^-4	INTERGENIC
2L	2519592	2L_2519592_DEL [dm3] 2L_2519592_DEL [dm6]	GC	G	8.948e^-8	0.001	INTERGENIC
2L	9422921	2L_9422921_SNP [dm3] 2L_9422921_SNP [dm6]	A	T	9.165e^-8	0.001	INTRON Mco1	TF binding site BDTNP1_TFBS_dl
X	18364471	X_18364471_SNP [dm3] X_18470438_SNP [dm6]	C	A	9.231e^-8	0.001	INTRON CG32547
2L	9449583	2L_9449583_SNP [dm3] 2L_9449583_SNP [dm6]	G	T	9.443e^-8	0.001	UPSTREAM numb INTRON numb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2R	6855768	2R_6855768_SNP [dm3] 2R_10968263_SNP [dm6]	G	C	9.719e^-8	0.001	INTERGENIC
2L	8205083	2L_8205083_SNP [dm3] 2L_8205083_SNP [dm6]	G	A	9.946e^-8	0.001	START_GAINED SLC5A11 UTR_5_PRIME SLC5A11 DOWNSTREAM CR44120 & 1 other EXON CR44119	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	9691097	X_9691097_SNP [dm3] X_9797064_SNP [dm6]	C	G	1.001e^-7	0.001	INTRON CG32698
X	9691106	X_9691106_SNP [dm3] X_9797073_SNP [dm6]	A	G	1.001e^-7	0.001	INTRON CG32698
X	10830185	X_10830185_SNP [dm3] X_10936152_SNP [dm6]	G	A	1.077e^-7	0.001	INTRON Myo10A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16725715	2L_16725715_SNP [dm3] 2L_16725715_SNP [dm6]	T	G	1.094e^-7	0.001	UPSTREAM mir-1006 INTRON VhaSFD
2R	7043266	2R_7043266_SNP [dm3] 2R_11155761_SNP [dm6]	G	T	1.130e^-7	0.001	DOWNSTREAM CG13230 INTRON CG13229
3R	5457276	3R_5457276_SNP [dm3] 3R_9631554_SNP [dm6]	A	T	1.131e^-7	0.001	UPSTREAM SpdS & 1 other DOWNSTREAM CR45053 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11302238	2L_11302238_SNP [dm3] 2L_11302238_SNP [dm6]	C	G	1.228e^-7	0.001	INTERGENIC
2L	11017038	2L_11017038_SNP [dm3] 2L_11017038_SNP [dm6]	C	T	1.241e^-7	0.001	UTR_5_PRIME CG14913 DOWNSTREAM Acp32CD INTRON Samuel
X	5338087	X_5338087_SNP [dm3] X_5444054_SNP [dm6]	C	A	1.301e^-7	0.001	INTERGENIC
3L	848518	3L_848518_SNP [dm3] 3L_848518_SNP [dm6]	G	A	1.358e^-7	0.001	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15320023	2R_15320023_SNP [dm3] 2R_19432518_SNP [dm6]	T	A	1.380e^-7	0.001	INTRON Fak
2L	11016187	2L_11016187_SNP [dm3] 2L_11016187_SNP [dm6]	C	T	1.460e^-7	0.002	SYNONYMOUS_CODING Acp32CD UPSTREAM CG14913 INTRON Samuel	TF binding site mE1_TFBS_cad
2L	11302142	2L_11302142_SNP [dm3] 2L_11302142_SNP [dm6]	G	C	1.521e^-7	0.002	INTERGENIC
2L	11302216	2L_11302216_SNP [dm3] 2L_11302216_SNP [dm6]	T	G	1.624e^-7	0.002	INTERGENIC
2R	11758197	2R_11758197_SNP [dm3] 2R_15870692_SNP [dm6]	T	G	1.766e^-7	0.002	UTR_3_PRIME sli
2R	14021313	2R_14021313_SNP [dm3] 2R_18133808_SNP [dm6]	C	A	1.769e^-7	0.002	INTRON Hsf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14266228	2R_14266228_SNP [dm3] 2R_18378723_SNP [dm6]	C	T	1.793e^-7	0.002	DOWNSTREAM CR42736 INTERGENIC	TF binding site mE1_TFBS_cad
2R	14290001	2R_14290001_SNP [dm3] 2R_18402496_SNP [dm6]	C	T	1.793e^-7	0.002	UPSTREAM GstE4 DOWNSTREAM CR43687 EXON CR43688	TF binding site mE1_TFBS_Trl
2R	17623937	2R_17623937_SNP [dm3] 2R_21736432_SNP [dm6]	A	T	1.793e^-7	0.002	INTERGENIC
2R	17635889	2R_17635889_SNP [dm3] 2R_21748384_SNP [dm6]	C	T	1.793e^-7	0.002	INTERGENIC
X	10867011	X_10867011_SNP [dm3] X_10972978_SNP [dm6]	A	G	1.793e^-7	0.002	INTRON CG42339
X	10867075	X_10867075_SNP [dm3] X_10973042_SNP [dm6]	A	G	1.793e^-7	0.002	INTRON CG42339
X	10867199	X_10867199_SNP [dm3] X_10973166_SNP [dm6]	T	C	1.793e^-7	0.002	INTRON CG42339
X	16150714	X_16150714_SNP [dm3] X_16256681_SNP [dm6]	A	G	1.793e^-7	0.002	INTERGENIC
X	2156588	X_2156588_SNP [dm3] X_2262555_SNP [dm6]	T	C	1.793e^-7	0.002	UPSTREAM CG3071 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	2157651	X_2157651_SNP [dm3] X_2263618_SNP [dm6]	C	T	1.793e^-7	0.002	NON_SYNONYMOUS_CODING CG3071	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
X	8577753	X_8577753_SNP [dm3] X_8683720_SNP [dm6]	G	A	1.793e^-7	0.002	INTRON CG11284
2L	4027233	2L_4027233_SNP [dm3] 2L_4027233_SNP [dm6]	T	A	1.849e^-7	0.002	INTERGENIC
X	10894519	X_10894519_SNP [dm3] X_11000486_SNP [dm6]	A	G	1.894e^-7	0.002	INTRON CG42339
X	10894605	X_10894605_SNP [dm3] X_11000572_SNP [dm6]	T	C	1.894e^-7	0.002	INTRON CG42339
2R	12416604	2R_12416604_SNP [dm3] 2R_16529099_SNP [dm6]	A	T	1.917e^-7	0.002	INTRON Sema-2a
X	5904983	X_5904983_SNP [dm3] X_6010950_SNP [dm6]	C	T	2.073e^-7	0.002	INTRON mab-21	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	16073320	X_16073320_SNP [dm3] X_16179287_SNP [dm6]	C	A	2.109e^-7	0.002	INTERGENIC	TF binding site mE1_TFBS_sens
2R	18602573	2R_18602573_SNP [dm3] 2R_22715068_SNP [dm6]	T	C	2.167e^-7	0.002	INTRON CG30268	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14289986	2R_14289986_SNP [dm3] 2R_18402481_SNP [dm6]	C	G	2.235e^-7	0.002	UPSTREAM GstE4 DOWNSTREAM CR43687 EXON CR43688	TF binding site mE1_TFBS_Trl
2L	2097060	2L_2097060_SNP [dm3] 2L_2097060_SNP [dm6]	A	T	2.268e^-7	0.002	INTRON dpr3
3L	1401430	3L_1401430_SNP [dm3] 3L_1401430_SNP [dm6]	C	A	2.286e^-7	0.002	UTR_3_PRIME CG32320 UPSTREAM tRNA:E4:62Ad & 1 other INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
X	10867187	X_10867187_INS [dm3] X_10973154_INS [dm6]	C	CAGCAGGC	2.321e^-7	0.002	INTRON CG42339
X	2501859	X_2501859_SNP [dm3] X_2607826_SNP [dm6]	C	T	2.333e^-7	0.002	INTRON Bzd	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10894561	X_10894561_SNP [dm3] X_11000528_SNP [dm6]	A	T	2.420e^-7	0.002	INTRON CG42339
2R	17663571	2R_17663571_SNP [dm3] 2R_21776066_SNP [dm6]	C	T	2.468e^-7	0.002	INTERGENIC
2R	17663631	2R_17663631_SNP [dm3] 2R_21776126_SNP [dm6]	T	C	2.468e^-7	0.002	INTERGENIC
2L	1248844	2L_1248844_SNP [dm3] 2L_1248844_SNP [dm6]	G	A	2.521e^-7	0.002	INTERGENIC
2L	5316869	2L_5316869_SNP [dm3] 2L_5316869_SNP [dm6]	G	C	2.591e^-7	0.002	UTR_3_PRIME Ncoa6	TF binding site mE1_TFBS_cad
X	10808008	X_10808008_SNP [dm3] X_10913975_SNP [dm6]	A	G	2.606e^-7	0.002	INTRON CG43901
3R	5465933	3R_5465933_SNP [dm3] 3R_9640211_SNP [dm6]	G	A	2.661e^-7	0.002	UPSTREAM Dh44 INTRON Dh44
X	13522812	X_13522812_SNP [dm3] X_13628779_SNP [dm6]	A	G	2.760e^-7	0.002	INTRON NFAT
X	13522793	X_13522793_SNP [dm3] X_13628760_SNP [dm6]	C	T	2.770e^-7	0.002	INTRON NFAT
X	13522804	X_13522804_SNP [dm3] X_13628771_SNP [dm6]	G	T	2.770e^-7	0.002	INTRON NFAT
X	13522805	X_13522805_SNP [dm3] X_13628772_SNP [dm6]	A	T	2.770e^-7	0.002	INTRON NFAT
3R	5468480	3R_5468480_SNP [dm3] 3R_9642758_SNP [dm6]	T	C	2.853e^-7	0.002	INTRON Dh44
3L	11849195	3L_11849195_DEL [dm3] 3L_11856095_DEL [dm6]	CC	C	2.897e^-7	0.002	INTRON CG44837
4	1119870	4_1119870_SNP [dm3] 4_1099244_SNP [dm6]	C	T	2.903e^-7	0.002	INTRON sv	TF binding site BDTNP1_TFBS_dl
2R	17352167	2R_17352167_SNP [dm3] 2R_21464662_SNP [dm6]	C	T	2.956e^-7	0.002	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
X	6092366	X_6092366_SNP [dm3] X_6198333_SNP [dm6]	G	A	2.988e^-7	0.002	NON_SYNONYMOUS_CODING CG32751 DOWNSTREAM CG43090
2R	14266210	2R_14266210_SNP [dm3] 2R_18378705_SNP [dm6]	T	C	2.999e^-7	0.002	DOWNSTREAM CR42736 INTERGENIC	TF binding site mE1_TFBS_cad
2R	17663625	2R_17663625_SNP [dm3] 2R_21776120_SNP [dm6]	T	A	3.073e^-7	0.003	INTERGENIC
2L	7363786	2L_7363786_SNP [dm3] 2L_7363786_SNP [dm6]	G	A	3.234e^-7	0.003	INTRON Wnt10
2R	293064	2R_293064_SNP [dm3] 2R_4405559_SNP [dm6]	C	T	3.240e^-7	0.003	INTRON Gprk1
2L	1435202	2L_1435202_SNP [dm3] 2L_1435202_SNP [dm6]	T	A	3.335e^-7	0.003	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
X	12719500	X_12719500_SNP [dm3] X_12825467_SNP [dm6]	T	C	3.352e^-7	0.003	INTRON Pde9	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7758051	X_7758051_SNP [dm3] X_7864018_SNP [dm6]	T	G	3.377e^-7	0.003	DOWNSTREAM Ir7b INTERGENIC
2R	18030872	2R_18030872_SNP [dm3] 2R_22143367_SNP [dm6]	C	G	3.393e^-7	0.003	INTRON a	TF binding site BDTNP1_TFBS_twi
2L	8241005	2L_8241005_SNP [dm3] 2L_8241005_SNP [dm6]	T	G	3.401e^-7	0.003	SYNONYMOUS_CODING Spn28F	TF binding site mE1_TFBS_HSA
2L	14515451	2L_14515451_SNP [dm3] 2L_14515451_SNP [dm6]	C	T	3.469e^-7	0.003	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9681516	3L_9681516_DEL [dm3] 3L_9688416_DEL [dm6]	AAATT	A	3.484e^-7	0.003	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13471039	X_13471039_SNP [dm3] X_13577006_SNP [dm6]	C	T	3.499e^-7	0.003	START_GAINED Tango13 UTR_5_PRIME Tango13
2L	9023375	2L_9023375_SNP [dm3] 2L_9023375_SNP [dm6]	C	A	3.561e^-7	0.003	DOWNSTREAM CG9582 INTERGENIC
3R	5456618	3R_5456618_SNP [dm3] 3R_9630896_SNP [dm6]	G	T	3.592e^-7	0.003	UPSTREAM SpdS & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
4	1237281	4_1237281_SNP [dm3] 4_1233555_SNP [dm6]	C	A	3.678e^-7	0.003	INTRON Caps	TF binding site BDTNP1_TFBS_dl
X	10807803	X_10807803_SNP [dm3] X_10913770_SNP [dm6]	C	G	3.698e^-7	0.003	INTRON CG43901
2L	17401360	2L_17401360_SNP [dm3] 2L_17401360_SNP [dm6]	C	A	3.733e^-7	0.003	UTR_3_PRIME CLIP-190 INTRON CLIP-190
2L	6265021	2L_6265021_SNP [dm3] 2L_6265021_SNP [dm6]	C	T	3.896e^-7	0.003	UPSTREAM CG13983 INTRON Ddr
2R	12386551	2R_12386551_SNP [dm3] 2R_16499046_SNP [dm6]	T	A	3.896e^-7	0.003	INTRON CG7813	TF binding site BDTNP1_TFBS_dl
3L	4616497	3L_4616497_SNP [dm3] 3L_4616497_SNP [dm6]	C	T	3.896e^-7	0.003	INTRON Src64B
3L	9464446	3L_9464446_SNP [dm3] 3L_9471346_SNP [dm6]	A	G	3.896e^-7	0.003	SYNONYMOUS_CODING CG44838 INTRON CG44838	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19731871	3R_19731871_SNP [dm3] 3R_23906149_SNP [dm6]	T	C	3.896e^-7	0.003	INTRON sba
X	5477826	X_5477826_SNP [dm3] X_5583793_SNP [dm6]	T	C	3.899e^-7	0.003	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	7955222	2L_7955222_SNP [dm3] 2L_7955222_SNP [dm6]	A	T	4.043e^-7	0.003	INTRON Snoo
X	2418130	X_2418130_SNP [dm3] X_2524097_SNP [dm6]	C	A	4.043e^-7	0.003	SYNONYMOUS_CODING trol	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	10383348	3R_10383348_SNP [dm3] 3R_14557626_SNP [dm6]	A	T	4.106e^-7	0.003	UTR_5_PRIME Pde6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12719474	X_12719474_SNP [dm3] X_12825441_SNP [dm6]	A	T	4.106e^-7	0.003	INTRON Pde9	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18005762	X_18005762_SNP [dm3] X_18111729_SNP [dm6]	G	A	4.225e^-7	0.003	INTRON wupA
2L	12369912	2L_12369912_SNP [dm3] 2L_12369912_SNP [dm6]	G	A	4.290e^-7	0.003	UTR_5_PRIME bru-2 INTRON bru-2
X	2474287	X_2474287_INS [dm3] X_2580254_INS [dm6]	A	ATAAAA	4.334e^-7	0.003	UTR_5_PRIME Vha36-3 UPSTREAM CG13759
2L	9428384	2L_9428384_SNP [dm3] 2L_9428384_SNP [dm6]	G	C	4.409e^-7	0.003	NON_SYNONYMOUS_CODING CG42847 DOWNSTREAM FucTB & 1 other
X	19538778	X_19538778_SNP [dm3] X_19644745_SNP [dm6]	G	A	4.495e^-7	0.003	SYNONYMOUS_CODING Arp10 DOWNSTREAM Sec61gamma	TF binding site mE1_TFBS_chinmo
2R	3076014	2R_3076014_SNP [dm3] 2R_7188509_SNP [dm6]	T	A	4.533e^-7	0.003	INTRON pk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	11228631	3L_11228631_SNP [dm3] 3L_11235531_SNP [dm6]	A	T	4.652e^-7	0.003	SYNONYMOUS_CODING Ir68a DOWNSTREAM CR44718
2L	16730701	2L_16730701_SNP [dm3] 2L_16730701_SNP [dm6]	A	G	4.675e^-7	0.003	SYNONYMOUS_CODING CG17996 UTR_3_PRIME CG31812 DOWNSTREAM Prosbeta4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk mE1_TFBS_Ubx
2L	1101459	2L_1101459_SNP [dm3] 2L_1101459_SNP [dm6]	C	T	4.684e^-7	0.003	INTRON CG4629
2L	9445681	2L_9445681_SNP [dm3] 2L_9445681_SNP [dm6]	T	C	4.684e^-7	0.003	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	9458047	2L_9458047_SNP [dm3] 2L_9458047_SNP [dm6]	G	A	4.684e^-7	0.003	INTRON numb
2R	17086883	2R_17086883_SNP [dm3] 2R_21199378_SNP [dm6]	G	A	4.684e^-7	0.003	UTR_3_PRIME Lapsyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
X	10083422	X_10083422_SNP [dm3] X_10189389_SNP [dm6]	G	T	4.764e^-7	0.003	SYNONYMOUS_CODING CG43902 INTRON CR44894
X	10083424	X_10083424_SNP [dm3] X_10189391_SNP [dm6]	T	C	4.764e^-7	0.003	NON_SYNONYMOUS_CODING CG43902 INTRON CR44894
X	16512466	X_16512466_SNP [dm3] X_16618433_SNP [dm6]	T	G	4.800e^-7	0.003	INTRON CG9782	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	22131352	X_22131352_SNP [dm3] X_22729516_SNP [dm6]	C	T	4.815e^-7	0.003	INTRON CR44997	transposable element FlyBase
X	12898931	X_12898931_SNP [dm3] X_13004898_SNP [dm6]	C	A	4.880e^-7	0.003	UPSTREAM CG15719 INTRON rad
2R	10878158	2R_10878158_SNP [dm3] 2R_14990653_SNP [dm6]	A	T	4.907e^-7	0.003	SYNONYMOUS_CODING pcs INTRON CG7639	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12719477	X_12719477_SNP [dm3] X_12825444_SNP [dm6]	G	T	5.082e^-7	0.004	INTRON Pde9	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6308000	2L_6308000_SNP [dm3] 2L_6308000_SNP [dm6]	A	G	5.170e^-7	0.004	UPSTREAM CG13984 DOWNSTREAM CG43922 INTRON Ddr
2R	6832846	2R_6832846_SNP [dm3] 2R_10945341_SNP [dm6]	A	T	5.170e^-7	0.004	UPSTREAM CR45228 INTERGENIC
X	13217321	X_13217321_SNP [dm3] X_13323288_SNP [dm6]	T	C	5.170e^-7	0.004	INTRON IP3K2
X	5570517	X_5570517_SNP [dm3] X_5676484_SNP [dm6]	C	T	5.170e^-7	0.004	INTRON Tre1	regulatory region REDfly_CRMs
2L	9426013	2L_9426013_SNP [dm3] 2L_9426013_SNP [dm6]	C	G	5.275e^-7	0.004	SYNONYMOUS_CODING Mco1 UPSTREAM Fbp2
2L	9426171	2L_9426171_SNP [dm3] 2L_9426171_SNP [dm6]	T	A	5.447e^-7	0.004	UTR_3_PRIME Mco1 UPSTREAM Fbp2
2L	9067065	2L_9067065_SNP [dm3] 2L_9067065_SNP [dm6]	C	A	5.462e^-7	0.004	INTRON CG31708
2R	7138856	2R_7138856_SNP [dm3] 2R_11251351_SNP [dm6]	C	G	5.466e^-7	0.004	SYNONYMOUS_CODING Or47a DOWNSTREAM Cpr47Ea	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1878771	2L_1878771_DEL [dm3] 2L_1878771_DEL [dm6]	TAT	T	5.677e^-7	0.004	INTRON CG31663
2L	16449008	2L_16449008_SNP [dm3] 2L_16449008_SNP [dm6]	T	A	5.708e^-7	0.004	UTR_5_PRIME Idgf2 UPSTREAM Idgf2 & 1 other INTRON Idgf2
2R	7266457	2R_7266457_SNP [dm3] 2R_11378952_SNP [dm6]	C	A	5.729e^-7	0.004	INTRON Tsp47F
2R	7270484	2R_7270484_SNP [dm3] 2R_11382979_SNP [dm6]	T	A	5.729e^-7	0.004	UTR_5_PRIME Sod3 INTRON Sod3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2R	7270833	2R_7270833_SNP [dm3] 2R_11383328_SNP [dm6]	C	T	5.729e^-7	0.004	INTRON Sod3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	7272094	2R_7272094_SNP [dm3] 2R_11384589_SNP [dm6]	G	C	5.729e^-7	0.004	UPSTREAM Sod3 DOWNSTREAM sprt INTERGENIC	TF binding site mE1_TFBS_cad
2R	7274752	2R_7274752_SNP [dm3] 2R_11387247_SNP [dm6]	G	T	5.729e^-7	0.004	UTR_3_PRIME CG30022 INTRON sprt
2R	7277334	2R_7277334_SNP [dm3] 2R_11389829_SNP [dm6]	A	G	5.729e^-7	0.004	INTRON sprt
2L	16727818	2L_16727818_SNP [dm3] 2L_16727818_SNP [dm6]	A	G	5.821e^-7	0.004	UTR_5_PRIME VhaSFD DOWNSTREAM CR43671	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
2R	14560544	2R_14560544_SNP [dm3] 2R_18673039_SNP [dm6]	A	T	5.824e^-7	0.004	UTR_5_PRIME edl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13563047	2R_13563047_SNP [dm3] 2R_17675542_SNP [dm6]	T	C	5.828e^-7	0.004	SYNONYMOUS_CODING Sema-1b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6886559	2R_6886559_DEL [dm3] 2R_10999054_DEL [dm6]	CGGTGGTGAGAGTTTTCC...	C	5.873e^-7	0.004	INTRON luna
3R	11332201	3R_11332201_SNP [dm3] 3R_15506479_SNP [dm6]	T	C	5.875e^-7	0.004	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	6719605	3R_6719605_SNP [dm3] 3R_10893883_SNP [dm6]	G	A	5.951e^-7	0.004	NON_SYNONYMOUS_CODING Leash UPSTREAM CG6621	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	6030889	2L_6030889_SNP [dm3] 2L_6030889_SNP [dm6]	C	T	6.014e^-7	0.004	INTRON CG9109
2L	6266030	2L_6266030_SNP [dm3] 2L_6266030_SNP [dm6]	A	C	6.014e^-7	0.004	INTRON Ddr
2L	9425371	2L_9425371_SNP [dm3] 2L_9425371_SNP [dm6]	A	G	6.014e^-7	0.004	SYNONYMOUS_CODING Mco1
3R	5442464	3R_5442464_SNP [dm3] 3R_9616742_SNP [dm6]	G	A	6.090e^-7	0.004	INTRON CG8312
2L	5553446	2L_5553446_SNP [dm3] 2L_5553446_SNP [dm6]	C	T	6.159e^-7	0.004	SYNONYMOUS_CODING CG14013 UPSTREAM CG14017 DOWNSTREAM CG18269
2R	10343053	2R_10343053_SNP [dm3] 2R_14455548_SNP [dm6]	G	T	6.159e^-7	0.004	INTRON Oaz	TF binding site BDTNP1_TFBS_twi
2L	11016964	2L_11016964_INS [dm3] 2L_11016964_INS [dm6]	A	ATTATTA	6.214e^-7	0.004	UPSTREAM CG14913 DOWNSTREAM Acp32CD INTRON Samuel
2L	11016968	2L_11016968_DEL [dm3] 2L_11016968_DEL [dm6]	ACTATTT	A	6.214e^-7	0.004	UPSTREAM CG14913 DOWNSTREAM Acp32CD INTRON Samuel
2L	1550903	2L_1550903_SNP [dm3] 2L_1550903_SNP [dm6]	G	T	6.225e^-7	0.004	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	19723882	X_19723882_SNP [dm3] X_19829849_SNP [dm6]	A	G	6.228e^-7	0.004	DOWNSTREAM pico INTERGENIC
2R	18032551	2R_18032551_SNP [dm3] 2R_22145046_SNP [dm6]	C	T	6.338e^-7	0.004	INTRON a
2L	9593652	2L_9593652_SNP [dm3] 2L_9593652_SNP [dm6]	C	T	6.342e^-7	0.004	INTERGENIC	regulatory region REDfly_CRMs
2L	6404898	2L_6404898_SNP [dm3] 2L_6404898_SNP [dm6]	A	T	6.376e^-7	0.004	INTRON CG42368
2R	1612360	2R_1612360_SNP [dm3] 2R_5724855_SNP [dm6]	C	G	6.382e^-7	0.004	INTRON ap
2L	9425998	2L_9425998_SNP [dm3] 2L_9425998_SNP [dm6]	G	C	6.433e^-7	0.004	SYNONYMOUS_CODING Mco1 UPSTREAM Fbp2
2L	1632265	2L_1632265_SNP [dm3] 2L_1632265_SNP [dm6]	G	A	6.438e^-7	0.004	INTERGENIC
X	11046111	X_11046111_SNP [dm3] X_11152078_SNP [dm6]	C	A	6.552e^-7	0.004	SYNONYMOUS_CODING Lint-1 DOWNSTREAM rtv
2L	11167255	2L_11167255_SNP [dm3] 2L_11167255_SNP [dm6]	G	A	6.743e^-7	0.004	UTR_5_PRIME Ca-beta INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	12831289	2L_12831289_SNP [dm3] 2L_12831289_SNP [dm6]	C	T	6.817e^-7	0.004	INTERGENIC
X	2469924	X_2469924_SNP [dm3] X_2575891_SNP [dm6]	T	C	6.833e^-7	0.004	SPLICE_SITE_REGION Pdfr INTRON Pdfr
3R	5477233	3R_5477233_SNP [dm3] 3R_9651511_SNP [dm6]	G	T	6.924e^-7	0.004	UTR_3_PRIME CG9492 DOWNSTREAM Dh44
3R	6645584	3R_6645584_SNP [dm3] 3R_10819862_SNP [dm6]	C	A	6.936e^-7	0.004	INTERGENIC
2L	19906429	2L_19906429_SNP [dm3] 2L_19906429_SNP [dm6]	C	T	6.946e^-7	0.004	INTRON sick
2R	7270037	2R_7270037_SNP [dm3] 2R_11382532_SNP [dm6]	C	A	7.003e^-7	0.004	INTRON Sod3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3R	7293849	3R_7293849_SNP [dm3] 3R_11468127_SNP [dm6]	G	A	7.052e^-7	0.004	DOWNSTREAM CG17230 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7301090	3R_7301090_SNP [dm3] 3R_11475368_SNP [dm6]	T	G	7.052e^-7	0.004	INTERGENIC	TF binding site mE1_TFBS_inv
2L	16494131	2L_16494131_SNP [dm3] 2L_16494131_SNP [dm6]	A	G	7.174e^-7	0.004	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2142470	2L_2142470_SNP [dm3] 2L_2142470_SNP [dm6]	C	A	7.176e^-7	0.004	SYNONYMOUS_CODING tho2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
4	1266618	4_1266618_SNP [dm3] 4_1262892_SNP [dm6]	G	A	7.195e^-7	0.004	INTRON Caps
2L	13423200	2L_13423200_SNP [dm3] 2L_13423200_SNP [dm6]	A	T	7.298e^-7	0.004	UTR_5_PRIME CG42784
3R	6679588	3R_6679588_SNP [dm3] 3R_10853866_SNP [dm6]	G	A	7.354e^-7	0.004	SYNONYMOUS_CODING CG6567 UPSTREAM CG4511 DOWNSTREAM CG4565	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	16403066	2R_16403066_SNP [dm3] 2R_20515561_SNP [dm6]	G	A	7.432e^-7	0.004	INTERGENIC
2R	17915065	2R_17915065_SNP [dm3] 2R_22027560_SNP [dm6]	T	C	7.443e^-7	0.004	INTRON CG34370
2L	20765820	2L_20765820_SNP [dm3] 2L_20765820_SNP [dm6]	C	T	7.496e^-7	0.004	SYNONYMOUS_CODING dia
3L	8715864	3L_8715864_SNP [dm3] 3L_8722764_SNP [dm6]	A	G	7.570e^-7	0.004	SYNONYMOUS_CODING CG6511	TF binding site mE1_TFBS_sens
2L	8136907	2L_8136907_SNP [dm3] 2L_8136907_SNP [dm6]	G	A	7.585e^-7	0.004	SYNONYMOUS_CODING CG8552	TF binding site mE1_TFBS_cad
2L	1632289	2L_1632289_SNP [dm3] 2L_1632289_SNP [dm6]	G	A	7.659e^-7	0.004	INTERGENIC
2L	3907031	2L_3907031_SNP [dm3] 2L_3907031_SNP [dm6]	T	C	7.659e^-7	0.004	INTRON fred
2R	12646160	2R_12646160_SNP [dm3] 2R_16758655_SNP [dm6]	A	G	7.665e^-7	0.004	SYNONYMOUS_CODING unc-104 INTRON unc-104
2L	9067516	2L_9067516_SNP [dm3] 2L_9067516_SNP [dm6]	C	T	7.666e^-7	0.004	INTRON CG31708
3L	3931385	3L_3931385_SNP [dm3] 3L_3931385_SNP [dm6]	A	G	7.680e^-7	0.004	INTRON Eip63F-1
3R	4222633	3R_4222633_SNP [dm3] 3R_8396911_SNP [dm6]	G	A	7.697e^-7	0.004	INTRON CG45263
2R	17776129	2R_17776129_SNP [dm3] 2R_21888624_SNP [dm6]	A	G	7.756e^-7	0.004	INTRON Fili
X	20950784	X_20950784_SNP [dm3] X_21079757_SNP [dm6]	C	A	7.849e^-7	0.004	DOWNSTREAM bves INTRON bves	TF binding site BDTNP1_TFBS_dl
2L	9421743	2L_9421743_SNP [dm3] 2L_9421743_SNP [dm6]	G	C	7.927e^-7	0.004	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9421775	2L_9421775_SNP [dm3] 2L_9421775_SNP [dm6]	G	A	7.927e^-7	0.004	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2930839	2L_2930839_SNP [dm3] 2L_2930839_SNP [dm6]	G	A	8.145e^-7	0.004	INTRON lilli
X	11193128	X_11193128_SNP [dm3] X_11299095_SNP [dm6]	C	T	8.316e^-7	0.005	INTRON CG44422
2L	2133523	2L_2133523_SNP [dm3] 2L_2133523_SNP [dm6]	G	A	8.352e^-7	0.005	INTRON GlyP
2L	9417946	2L_9417946_SNP [dm3] 2L_9417946_SNP [dm6]	G	C	8.381e^-7	0.005	INTRON Mco1
2L	5512955	2L_5512955_SNP [dm3] 2L_5512955_SNP [dm6]	T	C	8.637e^-7	0.005	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	18022120	X_18022120_SNP [dm3] X_18128087_SNP [dm6]	A	T	8.675e^-7	0.005	UPSTREAM mir-210 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15320007	2R_15320007_SNP [dm3] 2R_19432502_SNP [dm6]	A	T	8.763e^-7	0.005	INTRON Fak
2R	15320026	2R_15320026_SNP [dm3] 2R_19432521_SNP [dm6]	C	T	8.763e^-7	0.005	INTRON Fak
2L	16494133	2L_16494133_SNP [dm3] 2L_16494133_SNP [dm6]	G	T	8.771e^-7	0.005	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	16927840	2R_16927840_SNP [dm3] 2R_21040335_SNP [dm6]	C	A	8.858e^-7	0.005	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9440864	2L_9440864_SNP [dm3] 2L_9440864_SNP [dm6]	A	G	8.962e^-7	0.005	UPSTREAM CG33723 INTRON numb
2L	18711523	2L_18711523_SNP [dm3] 2L_18711523_SNP [dm6]	C	T	9.042e^-7	0.005	SYNONYMOUS_CODING Irk3 DOWNSTREAM Grip71
2L	6075713	2L_6075713_SNP [dm3] 2L_6075713_SNP [dm6]	C	A	9.042e^-7	0.005	UPSTREAM CR43801 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6075722	2L_6075722_SNP [dm3] 2L_6075722_SNP [dm6]	A	C	9.042e^-7	0.005	UPSTREAM CR43801 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	5450555	3R_5450555_SNP [dm3] 3R_9624833_SNP [dm6]	G	A	9.058e^-7	0.005	UTR_3_PRIME CG8312 DOWNSTREAM CG9427	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	1512368	2L_1512368_SNP [dm3] 2L_1512368_SNP [dm6]	G	A	9.152e^-7	0.005	INTERGENIC
2L	6235300	2L_6235300_SNP [dm3] 2L_6235300_SNP [dm6]	T	C	9.176e^-7	0.005	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	11172645	2L_11172645_SNP [dm3] 2L_11172645_SNP [dm6]	A	T	9.244e^-7	0.005	UPSTREAM Vm32E INTRON Ca-beta
2R	17768028	2R_17768028_SNP [dm3] 2R_21880523_SNP [dm6]	A	G	9.296e^-7	0.005	DOWNSTREAM PpN58A INTRON Fili
3L	11329751	3L_11329751_SNP [dm3] 3L_11336651_SNP [dm6]	G	T	9.351e^-7	0.005	INTERGENIC
3L	15517990	3L_15517990_SNP [dm3] 3L_15524890_SNP [dm6]	T	A	9.351e^-7	0.005	SYNONYMOUS_CODING CG33986 UPSTREAM CG7945	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8251999	3L_8251999_SNP [dm3] 3L_8258899_SNP [dm6]	G	C	9.351e^-7	0.005	INTRON Dscam4
3L	9412360	3L_9412360_SNP [dm3] 3L_9419260_SNP [dm6]	G	A	9.351e^-7	0.005	UTR_5_PRIME CG3967	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	9412368	3L_9412368_SNP [dm3] 3L_9419268_SNP [dm6]	C	T	9.351e^-7	0.005	UTR_5_PRIME CG3967	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	4461902	2L_4461902_SNP [dm3] 2L_4461902_SNP [dm6]	C	T	9.361e^-7	0.005	NON_SYNONYMOUS_CODING CG15443 DOWNSTREAM CG15435	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4761089	2L_4761089_SNP [dm3] 2L_4761089_SNP [dm6]	A	T	9.361e^-7	0.005	INTRON CG15630
3R	13259868	3R_13259868_SNP [dm3] 3R_17434146_SNP [dm6]	T	C	9.383e^-7	0.005	INTRON CG5873 & 1 other
3R	9446917	3R_9446917_SNP [dm3] 3R_13621195_SNP [dm6]	G	C	9.633e^-7	0.005	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1917358	3L_1917358_SNP [dm3] 3L_1917358_SNP [dm6]	C	A	9.647e^-7	0.005	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	13259899	3R_13259899_SNP [dm3] 3R_17434177_SNP [dm6]	T	A	9.697e^-7	0.005	INTRON CG5873 & 1 other
3L	14943930	3L_14943930_SNP [dm3] 3L_14950830_SNP [dm6]	A	G	9.747e^-7	0.005	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25127242	3R_25127242_SNP [dm3] 3R_29301520_SNP [dm6]	T	A	9.816e^-7	0.005	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3006777	2L_3006777_SNP [dm3] 2L_3006777_SNP [dm6]	G	A	9.826e^-7	0.005	INTRON CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5923952	2L_5923952_SNP [dm3] 2L_5923952_SNP [dm6]	G	A	9.916e^-7	0.005	UPSTREAM CG9016 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3884823	3R_3884823_SNP [dm3] 3R_8059101_SNP [dm6]	C	T	9.951e^-7	0.005	UPSTREAM mAChR-B INTERGENIC
2R	11797455	2R_11797455_SNP [dm3] 2R_15909950_SNP [dm6]	G	T	1.019e^-6	0.005	INTRON sli	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	5473945	3R_5473945_SNP [dm3] 3R_9648223_SNP [dm6]	C	T	1.031e^-6	0.005	INTRON Dh44
X	6200207	X_6200207_SNP [dm3] X_6306174_SNP [dm6]	A	G	1.033e^-6	0.005	SYNONYMOUS_CODING CG3823
2L	17183508	2L_17183508_SNP [dm3] 2L_17183508_SNP [dm6]	T	C	1.042e^-6	0.005	SYNONYMOUS_CODING CG31750
2L	9452598	2L_9452598_SNP [dm3] 2L_9452598_SNP [dm6]	C	A	1.042e^-6	0.005	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	5479225	3L_5479225_SNP [dm3] 3L_5486125_SNP [dm6]	G	A	1.050e^-6	0.005	INTERGENIC
3L	6800036	3L_6800036_SNP [dm3] 3L_6806936_SNP [dm6]	A	C	1.050e^-6	0.005	INTERGENIC	regulatory region REDfly_CRMs
2L	20792769	2L_20792769_SNP [dm3] 2L_20792769_SNP [dm6]	G	T	1.058e^-6	0.005	INTRON vari	TF binding site mE1_TFBS_Trl
3L	16024791	3L_16024791_SNP [dm3] 3L_16031691_SNP [dm6]	G	T	1.064e^-6	0.005	UTR_3_PRIME Notum DOWNSTREAM mir-4941
2L	4116983	2L_4116983_SNP [dm3] 2L_4116983_SNP [dm6]	A	G	1.083e^-6	0.005	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5472590	3R_5472590_SNP [dm3] 3R_9646868_SNP [dm6]	A	G	1.090e^-6	0.005	UPSTREAM Fst INTRON Dh44
3R	10579221	3R_10579221_SNP [dm3] 3R_14753499_SNP [dm6]	T	G	1.099e^-6	0.005	SYNONYMOUS_CODING CG7362 INTRON jvl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6621489	2L_6621489_SNP [dm3] 2L_6621489_SNP [dm6]	A	T	1.116e^-6	0.005	NON_SYNONYMOUS_CODING CG11320
2R	15481181	2R_15481181_SNP [dm3] 2R_19593676_SNP [dm6]	G	T	1.163e^-6	0.006	UPSTREAM CG16716 INTRON sm
2R	18022546	2R_18022546_DEL [dm3] 2R_22135041_DEL [dm6]	TAT	T	1.170e^-6	0.006	INTERGENIC
2L	10492729	2L_10492729_SNP [dm3] 2L_10492729_SNP [dm6]	A	C	1.179e^-6	0.006	INTRON Myo31DF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	23176862	3L_23176862_INS [dm3] 3L_23183762_INS [dm6]	A	AAAAACAGTTTGTCTCTACG...	1.180e^-6	0.006	INTRON CG34031 EXON CR43967	TF binding site BDTNP1_TFBS_dl
2L	3907033	2L_3907033_SNP [dm3] 2L_3907033_SNP [dm6]	T	G	1.183e^-6	0.006	INTRON fred
3L	11036559	3L_11036559_SNP [dm3] 3L_11043459_SNP [dm6]	A	C	1.192e^-6	0.006	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
3L	9846438	3L_9846438_SNP [dm3] 3L_9853338_SNP [dm6]	T	C	1.192e^-6	0.006	INTRON RasGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	6714476	2L_6714476_SNP [dm3] 2L_6714476_SNP [dm6]	G	A	1.198e^-6	0.006	INTRON AkhR
2L	11515288	2L_11515288_SNP [dm3] 2L_11515288_SNP [dm6]	G	A	1.222e^-6	0.006	SYNONYMOUS_CODING CG6509	TF binding site mE1_TFBS_HSA
3L	545899	3L_545899_SNP [dm3] 3L_545899_SNP [dm6]	T	A	1.226e^-6	0.006	UPSTREAM hipk INTRON hipk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	19913702	2L_19913702_SNP [dm3] 2L_19913702_SNP [dm6]	C	A	1.254e^-6	0.006	UPSTREAM Victoria INTRON sick
2L	19913705	2L_19913705_SNP [dm3] 2L_19913705_SNP [dm6]	A	G	1.254e^-6	0.006	UPSTREAM Victoria INTRON sick
3R	5474426	3R_5474426_SNP [dm3] 3R_9648704_SNP [dm6]	A	T	1.256e^-6	0.006	INTRON Dh44
3R	4806554	3R_4806554_SNP [dm3] 3R_8980832_SNP [dm6]	C	G	1.270e^-6	0.006	UPSTREAM CAHbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	2734256	X_2734256_SNP [dm3] X_2840223_SNP [dm6]	T	C	1.282e^-6	0.006	INTRON kirre
3R	9988295	3R_9988295_SNP [dm3] 3R_14162573_SNP [dm6]	G	A	1.292e^-6	0.006	UPSTREAM CG3199 INTERGENIC
2L	4733615	2L_4733615_SNP [dm3] 2L_4733615_SNP [dm6]	A	G	1.308e^-6	0.006	NON_SYNONYMOUS_CODING CG15631 DOWNSTREAM CG15630	TF binding site mE1_TFBS_sens
2R	2863146	2R_2863146_SNP [dm3] 2R_6975641_SNP [dm6]	G	A	1.311e^-6	0.006	UTR_3_PRIME vimar UPSTREAM Cyp6u1 & 1 other
2R	8760212	2R_8760212_DEL [dm3] 2R_12872707_DEL [dm6]	TATGTATGT	T	1.331e^-6	0.006	UPSTREAM CR43469 DOWNSTREAM CG3790 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3R	10014982	3R_10014982_SNP [dm3] 3R_14189260_SNP [dm6]	C	T	1.331e^-6	0.006	INTRON Dop1R1
X	5718706	X_5718706_SNP [dm3] X_5824673_SNP [dm6]	C	A	1.336e^-6	0.006	INTRON CG15765	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10795567	2R_10795567_DEL [dm3] 2R_14908062_DEL [dm6]	GAG	G	1.340e^-6	0.006	UPSTREAM CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11909882	2L_11909882_SNP [dm3] 2L_11909882_SNP [dm6]	T	A	1.355e^-6	0.006	INTRON Pde1c
3L	2684963	3L_2684963_SNP [dm3] 3L_2684963_SNP [dm6]	A	T	1.355e^-6	0.006	INTRON Fife
3L	9331581	3L_9331581_SNP [dm3] 3L_9338481_SNP [dm6]	C	G	1.355e^-6	0.006	UPSTREAM PGRP-LC DOWNSTREAM PGRP-LA INTERGENIC
3R	26134997	3R_26134997_INS [dm3] 3R_30309275_INS [dm6]	T	TAA	1.355e^-6	0.006	INTRON hdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10936089	2L_10936089_SNP [dm3] 2L_10936089_SNP [dm6]	C	T	1.392e^-6	0.006	UPSTREAM CG14072 INTRON dpr2
3L	9052719	3L_9052719_SNP [dm3] 3L_9059619_SNP [dm6]	G	A	1.396e^-6	0.006	INTRON Argk
3L	15313011	3L_15313011_SNP [dm3] 3L_15319911_SNP [dm6]	T	A	1.405e^-6	0.006	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	16487107	2L_16487107_SNP [dm3] 2L_16487107_SNP [dm6]	C	T	1.420e^-6	0.006	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	19722958	X_19722958_SNP [dm3] X_19828925_SNP [dm6]	T	G	1.426e^-6	0.006	INTERGENIC
3L	3930797	3L_3930797_SNP [dm3] 3L_3930797_SNP [dm6]	T	C	1.443e^-6	0.006	INTRON Eip63F-1
3L	3931903	3L_3931903_SNP [dm3] 3L_3931903_SNP [dm6]	T	A	1.443e^-6	0.006	INTRON Eip63F-1
X	13524019	X_13524019_SNP [dm3] X_13629986_SNP [dm6]	T	C	1.448e^-6	0.006	INTRON NFAT
X	13524023	X_13524023_INS [dm3] X_13629990_INS [dm6]	T	TCTT	1.448e^-6	0.006	INTRON NFAT
2R	43301	2R_43301_SNP [dm3] 2R_4155796_SNP [dm6]	G	T	1.455e^-6	0.006	INTERGENIC
3R	3965753	3R_3965753_SNP [dm3] 3R_8140031_SNP [dm6]	C	T	1.501e^-6	0.007	UPSTREAM tRNA:N5:84F & 1 other DOWNSTREAM tRNA:R2:84Fd & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	16675645	2L_16675645_SNP [dm3] 2L_16675645_SNP [dm6]	G	T	1.509e^-6	0.007	INTRON Trpgamma	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15506654	3L_15506654_SNP [dm3] 3L_15513554_SNP [dm6]	G	A	1.509e^-6	0.007	DOWNSTREAM Eip71CD INTERGENIC	regulatory region REDfly_CRMs
2R	16148383	2R_16148383_SNP [dm3] 2R_20260878_SNP [dm6]	G	A	1.529e^-6	0.007	SYNONYMOUS_CODING Hsl DOWNSTREAM PCNA
2L	7513004	2L_7513004_SNP [dm3] 2L_7513004_SNP [dm6]	C	T	1.571e^-6	0.007	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	5922494	2L_5922494_DEL [dm3] 2L_5922494_DEL [dm6]	ATCCCAAACAAAATATA...	A	1.574e^-6	0.007	UTR_3_PRIME bchs DOWNSTREAM CG9016
3R	4248989	3R_4248989_SNP [dm3] 3R_8423267_SNP [dm6]	C	G	1.582e^-6	0.007	INTRON CG45263	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10795824	2R_10795824_SNP [dm3] 2R_14908319_SNP [dm6]	G	A	1.589e^-6	0.007	UPSTREAM CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18137945	3L_18137945_SNP [dm3] 3L_18144845_SNP [dm6]	T	C	1.600e^-6	0.007	INTRON gk
3L	10291982	3L_10291982_DEL [dm3] 3L_10298882_DEL [dm6]	AA	G	1.619e^-6	0.007	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7505023	2L_7505023_SNP [dm3] 2L_7505023_SNP [dm6]	A	G	1.638e^-6	0.007	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	13167065	2L_13167065_SNP [dm3] 2L_13167065_SNP [dm6]	C	A	1.642e^-6	0.007	SYNONYMOUS_CODING Sir2 UPSTREAM DnaJ-H	TF binding site BDTNP1_TFBS_dl
3R	4955554	3R_4955554_SNP [dm3] 3R_9129832_SNP [dm6]	G	A	1.648e^-6	0.007	INTRON pum
2L	15013539	2L_15013539_SNP [dm3] 2L_15013539_SNP [dm6]	A	G	1.682e^-6	0.007	UPSTREAM CR43856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	2497165	2R_2497165_SNP [dm3] 2R_6609660_SNP [dm6]	T	C	1.692e^-6	0.007	UPSTREAM jing INTRON jing	TF binding site mE1_TFBS_Trl
2L	10853267	2L_10853267_SNP [dm3] 2L_10853267_SNP [dm6]	C	A	1.695e^-6	0.007	SYNONYMOUS_CODING CG43129	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	187347	3L_187347_SNP [dm3] 3L_187347_SNP [dm6]	T	A	1.697e^-6	0.007	UTR_3_PRIME rno DOWNSTREAM rno
3L	23689652	3L_23689652_INS [dm3] 3L_23696552_INS [dm6]	T	TTA	1.708e^-6	0.007	INTERGENIC	transposable element FlyBase
2L	14401327	2L_14401327_SNP [dm3] 2L_14401327_SNP [dm6]	G	A	1.761e^-6	0.007	INTRON elB
2L	14401329	2L_14401329_SNP [dm3] 2L_14401329_SNP [dm6]	T	C	1.761e^-6	0.007	INTRON elB
2R	7268871	2R_7268871_INS [dm3] 2R_11381366_INS [dm6]	C	CACGACCGACCAACTAGCAG...	1.794e^-6	0.008	UTR_3_PRIME Sod3 INTRON Sod3
2R	13541960	2R_13541960_SNP [dm3] 2R_17654455_SNP [dm6]	A	C	1.819e^-6	0.008	INTRON CCHa1-R
3L	2684827	3L_2684827_DEL [dm3] 3L_2684827_DEL [dm6]	CATGA	C	1.827e^-6	0.008	INTRON Fife
2L	10036903	2L_10036903_SNP [dm3] 2L_10036903_SNP [dm6]	C	A	1.830e^-6	0.008	SYNONYMOUS_CODING obst-B
X	10104932	X_10104932_DEL [dm3] X_10210899_DEL [dm6]	AA	A	1.841e^-6	0.008	UPSTREAM CG15309 DOWNSTREAM CR43899 INTRON CG15309	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	9155675	3L_9155675_SNP [dm3] 3L_9162575_SNP [dm6]	T	G	1.853e^-6	0.008	INTRON Rdl
3R	25278060	3R_25278060_SNP [dm3] 3R_29452338_SNP [dm6]	C	T	1.858e^-6	0.008	INTRON Ptp99A
2L	4762587	2L_4762587_SNP [dm3] 2L_4762587_SNP [dm6]	C	G	1.858e^-6	0.008	UPSTREAM CG42523 INTRON CG15630
2R	16148416	2R_16148416_SNP [dm3] 2R_20260911_SNP [dm6]	G	A	1.861e^-6	0.008	NON_SYNONYMOUS_CODING Hsl DOWNSTREAM PCNA
2L	7513066	2L_7513066_SNP [dm3] 2L_7513066_SNP [dm6]	G	A	1.875e^-6	0.008	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	10342418	2R_10342418_SNP [dm3] 2R_14454913_SNP [dm6]	G	A	1.880e^-6	0.008	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	7512100	2L_7512100_SNP [dm3] 2L_7512100_SNP [dm6]	G	T	1.895e^-6	0.008	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	7512153	2L_7512153_DEL [dm3] 2L_7512153_DEL [dm6]	AACCAAAAA	A	1.895e^-6	0.008	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	7023504	2R_7023504_SNP [dm3] 2R_11135999_SNP [dm6]	T	G	1.910e^-6	0.008	SYNONYMOUS_CODING BBS4
2L	17068409	2L_17068409_DEL [dm3] 2L_17068409_DEL [dm6]	GAGAGTTTAGTG...	A	1.932e^-6	0.008	INTERGENIC
2R	10952439	2R_10952439_SNP [dm3] 2R_15064934_SNP [dm6]	G	A	1.933e^-6	0.008	INTERGENIC
3R	5471007	3R_5471007_SNP [dm3] 3R_9645285_SNP [dm6]	G	A	1.959e^-6	0.008	SYNONYMOUS_CODING Fst INTRON Dh44
2R	14651850	2R_14651850_SNP [dm3] 2R_18764345_SNP [dm6]	C	A	1.964e^-6	0.008	INTRON Mctp
2R	15327358	2R_15327358_SNP [dm3] 2R_19439853_SNP [dm6]	G	C	1.987e^-6	0.008	INTRON Spt5	TF binding site mE1_TFBS_sens
2L	4110243	2L_4110243_SNP [dm3] 2L_4110243_SNP [dm6]	T	C	1.989e^-6	0.008	INTRON ed
2L	9347797	2L_9347797_SNP [dm3] 2L_9347797_SNP [dm6]	T	A	1.997e^-6	0.008	DOWNSTREAM CR44802 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	5470769	3R_5470769_SNP [dm3] 3R_9645047_SNP [dm6]	T	C	2.001e^-6	0.008	UTR_3_PRIME Fst INTRON Dh44	TF binding site BDTNP1_TFBS_twi
2L	17884620	2L_17884620_DEL [dm3] 2L_17884620_DEL [dm6]	CT	C	2.010e^-6	0.008	INTERGENIC
3L	16818936	3L_16818936_SNP [dm3] 3L_16825836_SNP [dm6]	T	A	2.014e^-6	0.008	INTRON CG13024
3R	3755154	3R_3755154_SNP [dm3] 3R_7929432_SNP [dm6]	G	A	2.016e^-6	0.008	INTRON dsx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	14396680	2L_14396680_DEL [dm3] 2L_14396680_DEL [dm6]	ACGTAAGTTGGTAAGAGACA...	A	2.019e^-6	0.008	INTRON elB
2R	7510021	2R_7510021_SNP [dm3] 2R_11622516_SNP [dm6]	A	G	2.049e^-6	0.008	INTRON CG9005	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	16390479	2L_16390479_INS [dm3] 2L_16390479_INS [dm6]	T	TGTACAT	2.051e^-6	0.008	INTERGENIC
2L	16390486	2L_16390486_SNP [dm3] 2L_16390486_SNP [dm6]	C	T	2.051e^-6	0.008	INTERGENIC
2L	16390487	2L_16390487_SNP [dm3] 2L_16390487_SNP [dm6]	C	T	2.051e^-6	0.008	INTERGENIC
2L	16390490	2L_16390490_SNP [dm3] 2L_16390490_SNP [dm6]	C	T	2.051e^-6	0.008	INTERGENIC
2L	16872856	2L_16872856_SNP [dm3] 2L_16872856_SNP [dm6]	G	A	2.054e^-6	0.008	INTRON CR31781
2L	7504793	2L_7504793_SNP [dm3] 2L_7504793_SNP [dm6]	A	G	2.082e^-6	0.008	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	11017012	2L_11017012_SNP [dm3] 2L_11017012_SNP [dm6]	C	T	2.112e^-6	0.008	UTR_5_PRIME CG14913 DOWNSTREAM Acp32CD INTRON Samuel
2R	6524669	2R_6524669_SNP [dm3] 2R_10637164_SNP [dm6]	A	G	2.151e^-6	0.008	INTRON CG11883
X	13522740	X_13522740_SNP [dm3] X_13628707_SNP [dm6]	C	T	2.179e^-6	0.008	INTRON NFAT	TF binding site mE1_TFBS_HSA
2L	16725512	2L_16725512_SNP [dm3] 2L_16725512_SNP [dm6]	C	A	2.198e^-6	0.008	UPSTREAM mir-1006 INTRON VhaSFD	TF binding site mE1_TFBS_HSA
2L	16729642	2L_16729642_SNP [dm3] 2L_16729642_SNP [dm6]	A	T	2.198e^-6	0.008	UPSTREAM CG31812 DOWNSTREAM CG17996 EXON CR43671	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	16731144	2L_16731144_DEL [dm3] 2L_16731144_DEL [dm6]	GAACACAAAAT...	A	2.198e^-6	0.008	UTR_3_PRIME CG31812 UPSTREAM CG17996 DOWNSTREAM Prosbeta4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	16731159	2L_16731159_SNP [dm3] 2L_16731159_SNP [dm6]	C	T	2.198e^-6	0.008	UTR_3_PRIME CG31812 UPSTREAM CG17996 DOWNSTREAM Prosbeta4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	16731160	2L_16731160_SNP [dm3] 2L_16731160_SNP [dm6]	C	A	2.198e^-6	0.008	UTR_3_PRIME CG31812 UPSTREAM CG17996 DOWNSTREAM Prosbeta4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	16731162	2L_16731162_DEL [dm3] 2L_16731162_DEL [dm6]	AC	T	2.198e^-6	0.008	UTR_3_PRIME CG31812 UPSTREAM CG17996 DOWNSTREAM Prosbeta4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	16731181	2L_16731181_DEL [dm3] 2L_16731181_DEL [dm6]	ATAT	A	2.198e^-6	0.008	UTR_3_PRIME CG31812 & 1 other UPSTREAM CG17996 DOWNSTREAM Prosbeta4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	18024346	X_18024346_DEL [dm3] X_18130313_DEL [dm6]	AG	A	2.198e^-6	0.008	UPSTREAM CG43133 DOWNSTREAM ari-1 INTERGENIC
2L	22255307	2L_22255307_SNP [dm3] 2L_22255307_SNP [dm6]	A	C	2.218e^-6	0.008	INTRON Tif-IA
2R	19980725	2R_19980725_SNP [dm3] 2R_24093202_SNP [dm6]	C	T	2.220e^-6	0.008	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	3267542	3R_3267542_SNP [dm3] 3R_7441820_SNP [dm6]	A	G	2.237e^-6	0.009	UTR_3_PRIME CG14598
X	9215580	X_9215580_SNP [dm3] X_9321547_SNP [dm6]	G	C	2.280e^-6	0.009	INTRON c12.2	TF binding site mE1_TFBS_cad
2L	3049072	2L_3049072_SNP [dm3] 2L_3049072_SNP [dm6]	G	A	2.281e^-6	0.009	DOWNSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	1623889	2L_1623889_SNP [dm3] 2L_1623889_SNP [dm6]	T	C	2.351e^-6	0.009	UPSTREAM CR44603 EXON CR44603
2L	18587133	2L_18587133_SNP [dm3] 2L_18587133_SNP [dm6]	A	G	2.393e^-6	0.009	INTRON Pde11
2R	92316	2R_92316_SNP [dm3] 2R_4204811_SNP [dm6]	G	T	2.443e^-6	0.009	INTERGENIC
3R	4392310	3R_4392310_SNP [dm3] 3R_8566588_SNP [dm6]	G	T	2.454e^-6	0.009	NON_SYNONYMOUS_CODING Cenp-C
2L	2164902	2L_2164902_SNP [dm3] 2L_2164902_SNP [dm6]	G	A	2.462e^-6	0.009	INTRON aop	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
X	2838349	X_2838349_SNP [dm3] X_2944316_SNP [dm6]	A	G	2.467e^-6	0.009	SYNONYMOUS_CODING CG14422 INTRON kirre	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_HSA
2L	20469515	2L_20469515_SNP [dm3] 2L_20469515_SNP [dm6]	G	A	2.471e^-6	0.009	INTRON CR44980	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12380095	X_12380095_SNP [dm3] X_12486062_SNP [dm6]	A	T	2.476e^-6	0.009	UPSTREAM Cpr11A INTERGENIC
2L	11168593	2L_11168593_SNP [dm3] 2L_11168593_SNP [dm6]	G	T	2.489e^-6	0.009	UPSTREAM Ca-beta INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	18507715	2L_18507715_SNP [dm3] 2L_18507715_SNP [dm6]	G	A	2.521e^-6	0.009	INTERGENIC
2R	6526039	2R_6526039_SNP [dm3] 2R_10638534_SNP [dm6]	C	T	2.537e^-6	0.009	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
2R	85949	2R_85949_SNP [dm3] 2R_4198444_SNP [dm6]	G	A	2.538e^-6	0.009	INTERGENIC
2L	3124031	2L_3124031_SNP [dm3] 2L_3124031_SNP [dm6]	T	A	2.546e^-6	0.009	NON_SYNONYMOUS_CODING toc
2L	16619492	2L_16619492_DEL [dm3] 2L_16619492_DEL [dm6]	CC	C	2.554e^-6	0.009	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	2388506	X_2388506_SNP [dm3] X_2494473_SNP [dm6]	G	T	2.560e^-6	0.009	SYNONYMOUS_CODING trol INTRON trol
2L	14406391	2L_14406391_SNP [dm3] 2L_14406391_SNP [dm6]	A	G	2.565e^-6	0.009	INTRON elB
2L	16395409	2L_16395409_SNP [dm3] 2L_16395409_SNP [dm6]	A	G	2.569e^-6	0.009	INTERGENIC
2R	15116706	2R_15116706_SNP [dm3] 2R_19229201_SNP [dm6]	G	A	2.575e^-6	0.009	DOWNSTREAM CG7137 INTRON cora	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	3929801	3L_3929801_SNP [dm3] 3L_3929801_SNP [dm6]	T	C	2.591e^-6	0.009	UPSTREAM Eip63F-1 INTRON Eip63F-1
X	1665831	X_1665831_SNP [dm3] X_1771798_SNP [dm6]	A	C	2.623e^-6	0.01	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	18024344	X_18024344_SNP [dm3] X_18130311_SNP [dm6]	A	T	2.632e^-6	0.01	UPSTREAM CG43133 DOWNSTREAM ari-1 INTERGENIC
2L	4907099	2L_4907099_SNP [dm3] 2L_4907099_SNP [dm6]	A	C	2.649e^-6	0.01	UPSTREAM CG2837 INTERGENIC
2R	6491486	2R_6491486_SNP [dm3] 2R_10603981_SNP [dm6]	C	T	2.665e^-6	0.01	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	233990	2R_233990_SNP [dm3] 2R_4346485_SNP [dm6]	T	A	2.665e^-6	0.01	INTRON Gprk1
3L	18734174	3L_18734174_SNP [dm3] 3L_18741074_SNP [dm6]	T	A	2.673e^-6	0.01	INTERGENIC
2L	10370772	2L_10370772_SNP [dm3] 2L_10370772_SNP [dm6]	G	A	2.697e^-6	0.01	SYNONYMOUS_CODING rho-5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14343596	2R_14343596_SNP [dm3] 2R_18456091_SNP [dm6]	A	G	2.748e^-6	0.01	DOWNSTREAM CG30116 INTERGENIC
3L	14944013	3L_14944013_DEL [dm3] 3L_14950913_DEL [dm6]	AA	A	2.804e^-6	0.01	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	14944017	3L_14944017_SNP [dm3] 3L_14950917_SNP [dm6]	C	G	2.804e^-6	0.01	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	18893705	3L_18893705_DEL [dm3] 3L_18900605_DEL [dm6]	AAAGTGAAATGCTTTA...	A	2.808e^-6	0.01	UTR_3_PRIME arx UPSTREAM CG6843 DOWNSTREAM RpL26
X	12529937	X_12529937_SNP [dm3] X_12635904_SNP [dm6]	G	A	2.825e^-6	0.01	UTR_5_PRIME Tomosyn UPSTREAM mir-970
2R	11446139	2R_11446139_SNP [dm3] 2R_15558634_SNP [dm6]	A	G	2.831e^-6	0.01	UPSTREAM CG12963 INTRON CG12963	TF binding site BDTNP1_TFBS_da
2R	14755663	2R_14755663_SNP [dm3] 2R_18868158_SNP [dm6]	C	A	2.831e^-6	0.01	START_GAINED CG43109 UTR_5_PRIME CG43109 DOWNSTREAM DptB
2L	9439637	2L_9439637_SNP [dm3] 2L_9439637_SNP [dm6]	A	T	2.836e^-6	0.01	DOWNSTREAM CG33723 INTRON numb
3L	20065100	3L_20065100_SNP [dm3] 3L_20072000_SNP [dm6]	T	C	2.845e^-6	0.01	INTRON sNPF-R	TF binding site mE1_TFBS_chinmo
3R	5474242	3R_5474242_SNP [dm3] 3R_9648520_SNP [dm6]	C	T	2.959e^-6	0.01	INTRON Dh44
2R	18542	2R_18542_SNP [dm3] 2R_4131037_SNP [dm6]	T	A	2.980e^-6	0.01	UTR_5_PRIME CG17683	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10936148	2L_10936148_SNP [dm3] 2L_10936148_SNP [dm6]	G	C	2.984e^-6	0.01	UPSTREAM CG14072 INTRON dpr2
2R	84786	2R_84786_SNP [dm3] 2R_4197281_SNP [dm6]	A	T	2.993e^-6	0.01	INTERGENIC
3L	20157548	3L_20157548_SNP [dm3] 3L_20164448_SNP [dm6]	A	G	3.004e^-6	0.01	INTRON CG42674
2R	77662	2R_77662_SNP [dm3] 2R_4190157_SNP [dm6]	C	T	3.010e^-6	0.01	INTERGENIC
2R	279117	2R_279117_SNP [dm3] 2R_4391612_SNP [dm6]	G	A	3.024e^-6	0.01	INTRON Gprk1
2L	18509727	2L_18509727_SNP [dm3] 2L_18509727_SNP [dm6]	T	A	3.032e^-6	0.01	UTR_5_PRIME CG10178 INTRON CG10178
2L	18509728	2L_18509728_SNP [dm3] 2L_18509728_SNP [dm6]	A	T	3.032e^-6	0.01	UTR_5_PRIME CG10178 INTRON CG10178
2L	18509736	2L_18509736_SNP [dm3] 2L_18509736_SNP [dm6]	G	C	3.032e^-6	0.01	UTR_5_PRIME CG10178 INTRON CG10178
2L	18509742	2L_18509742_MNP [dm3] 2L_18509742_MNP [dm6]	AGA	CTG	3.032e^-6	0.01	UTR_5_PRIME CG10178 INTRON CG10178
2L	18509746	2L_18509746_DEL [dm3] 2L_18509746_DEL [dm6]	AA	A	3.032e^-6	0.01	UTR_5_PRIME CG10178 INTRON CG10178
2R	16347256	2R_16347256_SNP [dm3] 2R_20459751_SNP [dm6]	G	T	3.045e^-6	0.01	INTRON CG12484
2R	18046	2R_18046_SNP [dm3] 2R_4130541_SNP [dm6]	T	A	3.049e^-6	0.01	UPSTREAM CG17683 INTERGENIC
2R	22557	2R_22557_SNP [dm3] 2R_4135052_SNP [dm6]	T	C	3.049e^-6	0.01	INTERGENIC
2R	27538	2R_27538_SNP [dm3] 2R_4140033_SNP [dm6]	T	C	3.049e^-6	0.01	INTERGENIC
2R	42591	2R_42591_SNP [dm3] 2R_4155086_SNP [dm6]	C	T	3.049e^-6	0.01	INTERGENIC
2R	43935	2R_43935_SNP [dm3] 2R_4156430_SNP [dm6]	C	A	3.049e^-6	0.01	INTERGENIC
2R	49559	2R_49559_SNP [dm3] 2R_4162054_SNP [dm6]	A	G	3.049e^-6	0.01	INTERGENIC
X	10398707	X_10398707_SNP [dm3] X_10504674_SNP [dm6]	G	A	3.068e^-6	0.01	INTRON spri	insulator Insulator_Class_II.mE01
2L	9704992	2L_9704992_SNP [dm3] 2L_9704992_SNP [dm6]	G	A	3.071e^-6	0.01	UPSTREAM CG31710 INTRON pelo & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	3929945	3L_3929945_SNP [dm3] 3L_3929945_SNP [dm6]	A	G	3.109e^-6	0.011	UPSTREAM Eip63F-1 INTRON Eip63F-1
2R	11446548	2R_11446548_INS [dm3] 2R_15559043_INS [dm6]	T	TTTAATCTTAATTTAAT...	3.110e^-6	0.011	UPSTREAM CG12963 INTRON CG12963	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11342153	2L_11342153_INS [dm3] 2L_11342153_INS [dm6]	T	TTC	3.115e^-6	0.011	DOWNSTREAM CG14926 INTERGENIC
3L	21610629	3L_21610629_SNP [dm3] 3L_21617529_SNP [dm6]	A	C	3.117e^-6	0.011	UPSTREAM CG11307 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1063038	2L_1063038_SNP [dm3] 2L_1063038_SNP [dm6]	T	A	3.170e^-6	0.011	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18024351	X_18024351_INS [dm3] X_18130318_INS [dm6]	T	TAACTGTGTGCGATTTACGA...	3.176e^-6	0.011	UPSTREAM CG43133 DOWNSTREAM ari-1 INTERGENIC
3L	15905731	3L_15905731_SNP [dm3] 3L_15912631_SNP [dm6]	A	T	3.177e^-6	0.011	INTRON sff
3L	15905734	3L_15905734_INS [dm3] 3L_15912634_INS [dm6]	T	TCACT	3.177e^-6	0.011	INTRON sff
2L	9181250	2L_9181250_SNP [dm3] 2L_9181250_SNP [dm6]	C	A	3.203e^-6	0.011	INTRON tai
2R	84941	2R_84941_SNP [dm3] 2R_4197436_SNP [dm6]	C	T	3.242e^-6	0.011	INTERGENIC
2L	16731073	2L_16731073_SNP [dm3] 2L_16731073_SNP [dm6]	C	A	3.242e^-6	0.011	UTR_3_PRIME CG31812 UPSTREAM CG17996 DOWNSTREAM Prosbeta4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
3L	16808355	3L_16808355_SNP [dm3] 3L_16815255_SNP [dm6]	C	T	3.259e^-6	0.011	INTRON nudC & 1 other
3L	22558323	3L_22558323_SNP [dm3] 3L_22565223_SNP [dm6]	C	T	3.301e^-6	0.011	INTERGENIC
2L	724807	2L_724807_DEL [dm3] 2L_724807_DEL [dm6]	AAG	A	3.369e^-6	0.011	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	7043838	2R_7043838_SNP [dm3] 2R_11156333_SNP [dm6]	T	C	3.369e^-6	0.011	INTRON CG13229	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5620333	2L_5620333_SNP [dm3] 2L_5620333_SNP [dm6]	C	T	3.389e^-6	0.011	UPSTREAM CR44796 DOWNSTREAM Cyp6a16 INTERGENIC
3L	21439496	3L_21439496_SNP [dm3] 3L_21446396_SNP [dm6]	T	G	3.419e^-6	0.011	INTRON Syx7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	12563449	2R_12563449_SNP [dm3] 2R_16675944_SNP [dm6]	A	T	3.428e^-6	0.011	INTRON CG30463
X	2367754	X_2367754_SNP [dm3] X_2473721_SNP [dm6]	T	C	3.454e^-6	0.011	SYNONYMOUS_CODING trol	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5337791	X_5337791_SNP [dm3] X_5443758_SNP [dm6]	G	C	3.472e^-6	0.011	INTERGENIC
X	5337793	X_5337793_SNP [dm3] X_5443760_SNP [dm6]	G	A	3.472e^-6	0.011	INTERGENIC
2L	10982337	2L_10982337_SNP [dm3] 2L_10982337_SNP [dm6]	A	T	3.511e^-6	0.011	UTR_3_PRIME SCAR & 1 other DOWNSTREAM SCAR
2L	7558665	2L_7558665_SNP [dm3] 2L_7558665_SNP [dm6]	A	G	3.546e^-6	0.012	INTRON RapGAP1
2R	1132852	2R_1132852_SNP [dm3] 2R_5245347_SNP [dm6]	G	A	3.583e^-6	0.012	INTRON Nipped-A	transposable element FlyBase
2L	20318379	2L_20318379_SNP [dm3] 2L_20318379_SNP [dm6]	G	A	3.586e^-6	0.012	UPSTREAM CR43606 INTRON spir
X	2378353	X_2378353_SNP [dm3] X_2484320_SNP [dm6]	G	A	3.603e^-6	0.012	INTRON trol
X	10979059	X_10979059_SNP [dm3] X_11085026_SNP [dm6]	A	G	3.644e^-6	0.012	INTRON sev
2L	12044046	2L_12044046_SNP [dm3] 2L_12044046_SNP [dm6]	C	T	3.650e^-6	0.012	UTR_5_PRIME CG6785 UPSTREAM CG6785 INTRON CG6785	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	18545735	2L_18545735_SNP [dm3] 2L_18545735_SNP [dm6]	T	C	3.658e^-6	0.012	INTRON Pde11
2L	18545947	2L_18545947_SNP [dm3] 2L_18545947_SNP [dm6]	T	C	3.658e^-6	0.012	INTRON Pde11
X	15517162	X_15517162_SNP [dm3] X_15623129_SNP [dm6]	C	T	3.659e^-6	0.012	INTRON sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15517164	X_15517164_SNP [dm3] X_15623131_SNP [dm6]	A	G	3.659e^-6	0.012	INTRON sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	69324	2R_69324_SNP [dm3] 2R_4181819_SNP [dm6]	T	C	3.679e^-6	0.012	INTERGENIC
2R	76637	2R_76637_SNP [dm3] 2R_4189132_SNP [dm6]	T	C	3.679e^-6	0.012	INTERGENIC
3R	10995024	3R_10995024_DEL [dm3] 3R_15169302_DEL [dm6]	CC	C	3.712e^-6	0.012	INTRON Gyc88E
2L	1550902	2L_1550902_SNP [dm3] 2L_1550902_SNP [dm6]	G	A	3.717e^-6	0.012	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18509735	2L_18509735_SNP [dm3] 2L_18509735_SNP [dm6]	A	C	3.739e^-6	0.012	UTR_5_PRIME CG10178 INTRON CG10178
X	10861016	X_10861016_DEL [dm3] X_10966983_DEL [dm6]	CC	C	3.743e^-6	0.012	DOWNSTREAM CG42339 INTRON C901	TF binding site mE1_TFBS_inv
2L	2181116	2L_2181116_DEL [dm3] 2L_2181116_DEL [dm6]	GTGGTGGTGCAGAAGGGGGT...	G	3.791e^-6	0.012	UPSTREAM CR43751 INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	1308520	2R_1308520_SNP [dm3] 2R_5421015_SNP [dm6]	A	T	3.834e^-6	0.012	INTRON laccase2
2R	13943330	2R_13943330_DEL [dm3] 2R_18055825_DEL [dm6]	AGCTTGGAATTTTA...	A	3.844e^-6	0.012	DOWNSTREAM CG10912 & 1 other INTERGENIC
2R	16667934	2R_16667934_SNP [dm3] 2R_20780429_SNP [dm6]	A	G	3.870e^-6	0.012	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5452256	3R_5452256_SNP [dm3] 3R_9626534_SNP [dm6]	G	A	3.887e^-6	0.012	UPSTREAM CG8319 & 1 other INTRON CG9427	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5453094	3R_5453094_SNP [dm3] 3R_9627372_SNP [dm6]	A	G	3.887e^-6	0.012	UTR_5_PRIME CG8319 UPSTREAM CG9427	TF binding site BDTNP1_TFBS_z mE1_TFBS_ttk mE1_TFBS_Ubx
3R	2551948	3R_2551948_SNP [dm3] 3R_6726226_SNP [dm6]	A	T	3.887e^-6	0.012	INTRON pb	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
2L	9447140	2L_9447140_SNP [dm3] 2L_9447140_SNP [dm6]	A	G	3.887e^-6	0.012	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	3125193	2L_3125193_SNP [dm3] 2L_3125193_SNP [dm6]	A	G	3.893e^-6	0.012	SYNONYMOUS_CODING toc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17288104	2R_17288104_SNP [dm3] 2R_21400599_SNP [dm6]	A	T	3.925e^-6	0.012	INTRON Sdc	TF binding site mE1_TFBS_cad
2L	9417714	2L_9417714_SNP [dm3] 2L_9417714_SNP [dm6]	C	A	3.929e^-6	0.012	INTRON Mco1
2L	5970579	2L_5970579_SNP [dm3] 2L_5970579_SNP [dm6]	T	A	3.932e^-6	0.012	UTR_3_PRIME Ucp4B DOWNSTREAM Ucp4C INTRON Ucp4B EXON CR43465	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	18338320	3L_18338320_SNP [dm3] 3L_18345220_SNP [dm6]	A	C	3.956e^-6	0.012	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	10368624	3R_10368624_SNP [dm3] 3R_14542902_SNP [dm6]	T	G	3.956e^-6	0.012	INTRON Pde6
3R	5204464	3R_5204464_SNP [dm3] 3R_9378742_SNP [dm6]	T	G	3.956e^-6	0.012	INTRON FER	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	16808371	3L_16808371_SNP [dm3] 3L_16815271_SNP [dm6]	T	C	4.031e^-6	0.012	INTRON nudC & 1 other
X	12528682	X_12528682_SNP [dm3] X_12634649_SNP [dm6]	G	A	4.061e^-6	0.013	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9980893	3R_9980893_SNP [dm3] 3R_14155171_SNP [dm6]	C	G	4.076e^-6	0.013	SYNONYMOUS_CODING CG31533 UPSTREAM CR44215
3R	21099111	3R_21099111_SNP [dm3] 3R_25273389_SNP [dm6]	A	T	4.084e^-6	0.013	UPSTREAM CG11878 DOWNSTREAM CG11889 & 1 other INTERGENIC
3R	8209449	3R_8209449_SNP [dm3] 3R_12383727_SNP [dm6]	C	T	4.166e^-6	0.013	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	1313937	2R_1313937_SNP [dm3] 2R_5426432_SNP [dm6]	T	G	4.175e^-6	0.013	INTRON laccase2	transposable element FlyBase
2L	7068421	2L_7068421_SNP [dm3] 2L_7068421_SNP [dm6]	C	T	4.179e^-6	0.013	SYNONYMOUS_CODING CG11289	TF binding site mE1_TFBS_sens
3L	22586298	3L_22586298_SNP [dm3] 3L_22593198_SNP [dm6]	G	A	4.183e^-6	0.013	INTRON CG14459
2L	12478955	2L_12478955_SNP [dm3] 2L_12478955_SNP [dm6]	C	G	4.201e^-6	0.013	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	136548	3L_136548_SNP [dm3] 3L_136548_SNP [dm6]	C	T	4.293e^-6	0.013	INTRON Pdk1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	21779541	3L_21779541_SNP [dm3] 3L_21786441_SNP [dm6]	C	G	4.313e^-6	0.013	INTERGENIC
2L	16432548	2L_16432548_SNP [dm3] 2L_16432548_SNP [dm6]	A	C	4.320e^-6	0.013	INTRON CG5888
3R	5472939	3R_5472939_INS [dm3] 3R_9647217_INS [dm6]	A	AA	4.381e^-6	0.013	INTRON Dh44
2L	16476739	2L_16476739_INS [dm3] 2L_16476739_INS [dm6]	A	ACATAT	4.401e^-6	0.013	INTRON dac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18510010	2L_18510010_SNP [dm3] 2L_18510010_SNP [dm6]	C	A	4.403e^-6	0.013	INTRON CG10178
2L	18510014	2L_18510014_SNP [dm3] 2L_18510014_SNP [dm6]	A	C	4.403e^-6	0.013	INTRON CG10178
2L	18510021	2L_18510021_SNP [dm3] 2L_18510021_SNP [dm6]	T	G	4.403e^-6	0.013	INTRON CG10178
2R	2473072	2R_2473072_SNP [dm3] 2R_6585567_SNP [dm6]	C	G	4.431e^-6	0.013	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12635723	X_12635723_SNP [dm3] X_12741690_SNP [dm6]	T	G	4.507e^-6	0.014	UPSTREAM CR45623 INTRON Smr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	79459	2R_79459_SNP [dm3] 2R_4191954_SNP [dm6]	G	A	4.569e^-6	0.014	INTERGENIC
2L	12503014	2L_12503014_SNP [dm3] 2L_12503014_SNP [dm6]	C	T	4.569e^-6	0.014	INTRON bun
2L	5936963	2L_5936963_SNP [dm3] 2L_5936963_SNP [dm6]	T	G	4.671e^-6	0.014	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8208872	3R_8208872_DEL [dm3] 3R_12383150_DEL [dm6]	GAATGTGAG	G	4.762e^-6	0.014	UPSTREAM GstD11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1116191	2L_1116191_SNP [dm3] 2L_1116191_SNP [dm6]	A	C	4.865e^-6	0.015	INTRON Pino	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	894557	3L_894557_SNP [dm3] 3L_894557_SNP [dm6]	A	C	4.885e^-6	0.015	UTR_3_PRIME CG32479
3L	20603323	3L_20603323_SNP [dm3] 3L_20610223_SNP [dm6]	A	T	4.893e^-6	0.015	INTRON knrl
3L	21729918	3L_21729918_DEL [dm3] 3L_21736818_DEL [dm6]	ACC	A	4.910e^-6	0.015	DOWNSTREAM CR43888 & 1 other INTERGENIC
2R	14956318	2R_14956318_SNP [dm3] 2R_19068813_SNP [dm6]	C	A	4.953e^-6	0.015	INTRON 5-HT1A
4	961965	4_961965_SNP [dm3] 4_941339_SNP [dm6]	T	A	4.968e^-6	0.015	INTRON mGluR
2L	20434871	2L_20434871_SNP [dm3] 2L_20434871_SNP [dm6]	T	C	4.999e^-6	0.015	INTRON CG31688
2L	14975394	2L_14975394_SNP [dm3] 2L_14975394_SNP [dm6]	G	A	5.006e^-6	0.015	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8446872	2R_8446872_SNP [dm3] 2R_12559367_SNP [dm6]	G	T	5.049e^-6	0.015	INTRON fra
2L	1114304	2L_1114304_INS [dm3] 2L_1114304_INS [dm6]	C	CC	5.086e^-6	0.015	DOWNSTREAM Pino & 1 other INTERGENIC
3L	3096698	3L_3096698_DEL [dm3] 3L_3096698_DEL [dm6]	GAA	G	5.110e^-6	0.015	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32288 & 4 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	21153562	3L_21153562_SNP [dm3] 3L_21160462_SNP [dm6]	T	C	5.118e^-6	0.015	INTRON Ac78C
3R	10153683	3R_10153683_SNP [dm3] 3R_14327961_SNP [dm6]	G	A	5.120e^-6	0.015	UPSTREAM spn-B DOWNSTREAM CG3321 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2L	1486457	2L_1486457_SNP [dm3] 2L_1486457_SNP [dm6]	T	C	5.355e^-6	0.016	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5444121	3R_5444121_SNP [dm3] 3R_9618399_SNP [dm6]	A	G	5.431e^-6	0.016	INTRON CG8312
2L	18509973	2L_18509973_SNP [dm3] 2L_18509973_SNP [dm6]	A	T	5.437e^-6	0.016	INTRON CG10178
2R	20090751	2R_20090751_SNP [dm3] 2R_24203228_SNP [dm6]	C	T	5.437e^-6	0.016	UTR_3_PRIME CG11406 INTRON CG11406
2R	117380	2R_117380_SNP [dm3] 2R_4229875_SNP [dm6]	A	G	5.489e^-6	0.016	INTERGENIC
2L	1878729	2L_1878729_SNP [dm3] 2L_1878729_SNP [dm6]	G	C	5.492e^-6	0.016	INTRON CG31663
X	6304104	X_6304104_SNP [dm3] X_6410071_SNP [dm6]	C	T	5.524e^-6	0.016	INTERGENIC
2L	4336791	2L_4336791_SNP [dm3] 2L_4336791_SNP [dm6]	C	T	5.604e^-6	0.016	NON_SYNONYMOUS_CODING Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	4336824	2L_4336824_SNP [dm3] 2L_4336824_SNP [dm6]	T	C	5.604e^-6	0.016	NON_SYNONYMOUS_CODING Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	4336832	2L_4336832_SNP [dm3] 2L_4336832_SNP [dm6]	A	G	5.604e^-6	0.016	SYNONYMOUS_CODING Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
X	14950493	X_14950493_SNP [dm3] X_15056460_SNP [dm6]	T	A	5.604e^-6	0.016	INTRON hiw	TF binding site mE1_TFBS_chinmo
X	14950502	X_14950502_SNP [dm3] X_15056469_SNP [dm6]	T	A	5.604e^-6	0.016	SPLICE_SITE_REGION hiw INTRON hiw	TF binding site mE1_TFBS_chinmo
2L	16484863	2L_16484863_SNP [dm3] 2L_16484863_SNP [dm6]	G	A	5.637e^-6	0.016	INTRON dac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	2145787	2L_2145787_SNP [dm3] 2L_2145787_SNP [dm6]	A	G	5.659e^-6	0.016	UTR_3_PRIME CG11723 UPSTREAM tho2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4292410	2L_4292410_SNP [dm3] 2L_4292410_SNP [dm6]	G	C	5.670e^-6	0.016	INTRON tutl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7306726	3L_7306726_SNP [dm3] 3L_7313626_SNP [dm6]	T	A	5.686e^-6	0.016	UPSTREAM unc-13-4A INTERGENIC
2L	2122892	2L_2122892_INS [dm3] 2L_2122892_INS [dm6]	A	ATCTAGCAATATCCACCCAA...	5.687e^-6	0.016	INTERGENIC
3R	8208870	3R_8208870_INS [dm3] 3R_12383148_INS [dm6]	A	ATTTGGCTGAGTAATTGG...	5.733e^-6	0.016	UPSTREAM GstD11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	996013	2L_996013_DEL [dm3] 2L_996013_DEL [dm6]	ATGTGGGTATA...	A	5.785e^-6	0.016	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	16524503	2L_16524503_SNP [dm3] 2L_16524503_SNP [dm6]	A	T	5.805e^-6	0.016	INTRON CG5953
3R	4007255	3R_4007255_SNP [dm3] 3R_8181533_SNP [dm6]	T	A	5.805e^-6	0.016	UPSTREAM grn INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	9933461	X_9933461_SNP [dm3] X_10039428_SNP [dm6]	G	T	5.827e^-6	0.016	SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_inv
3L	13212736	3L_13212736_SNP [dm3] 3L_13219636_SNP [dm6]	G	A	5.837e^-6	0.016	UPSTREAM CR45098 INTERGENIC	TF binding site mE1_TFBS_inv
3R	1779850	3R_1779850_SNP [dm3] 3R_5954128_SNP [dm6]	T	A	5.849e^-6	0.016	INTRON CG34113
3R	10726593	3R_10726593_SNP [dm3] 3R_14900871_SNP [dm6]	A	G	5.889e^-6	0.017	UTR_3_PRIME RpS5b UPSTREAM VhaPPA1-2 INTRON RpS5b	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	9431878	2L_9431878_SNP [dm3] 2L_9431878_SNP [dm6]	T	C	5.932e^-6	0.017	SYNONYMOUS_CODING scat UPSTREAM FucTB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	1046663	X_1046663_INS [dm3] X_1152630_INS [dm6]	C	CC	6.067e^-6	0.017	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	21726198	3L_21726198_SNP [dm3] 3L_21733098_SNP [dm6]	G	A	6.168e^-6	0.017	NON_SYNONYMOUS_CODING CG14568
3R	10397208	3R_10397208_SNP [dm3] 3R_14571486_SNP [dm6]	G	T	6.168e^-6	0.017	SYNONYMOUS_CODING CG7987	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24131873	3R_24131873_SNP [dm3] 3R_28306151_SNP [dm6]	T	C	6.175e^-6	0.017	INTERGENIC
X	12719539	X_12719539_SNP [dm3] X_12825506_SNP [dm6]	T	C	6.180e^-6	0.017	INTRON Pde9	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14943970	3L_14943970_SNP [dm3] 3L_14950870_SNP [dm6]	A	G	6.190e^-6	0.017	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	5122089	X_5122089_SNP [dm3] X_5228056_SNP [dm6]	C	A	6.206e^-6	0.017	INTRON CG15465 & 1 other
3R	5945774	3R_5945774_SNP [dm3] 3R_10120052_SNP [dm6]	A	C	6.207e^-6	0.017	UTR_3_PRIME CG3940 DOWNSTREAM gammaSnap2 & 1 other
3R	2350322	3R_2350322_SNP [dm3] 3R_6524600_SNP [dm6]	A	T	6.254e^-6	0.017	INTERGENIC
3R	1835472	3R_1835472_SNP [dm3] 3R_6009750_SNP [dm6]	A	G	6.351e^-6	0.018	DOWNSTREAM CG10280 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	16799395	2L_16799395_SNP [dm3] 2L_16799395_SNP [dm6]	G	A	6.379e^-6	0.018	UPSTREAM Ugt36Bc INTRON Ugt36Bc
2R	10944227	2R_10944227_SNP [dm3] 2R_15056722_SNP [dm6]	T	A	6.422e^-6	0.018	UPSTREAM CG33467 INTERGENIC
2R	10944295	2R_10944295_SNP [dm3] 2R_15056790_SNP [dm6]	T	C	6.422e^-6	0.018	UPSTREAM CG33467 INTERGENIC
2R	10946212	2R_10946212_SNP [dm3] 2R_15058707_SNP [dm6]	G	A	6.422e^-6	0.018	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10946223	2R_10946223_SNP [dm3] 2R_15058718_SNP [dm6]	A	C	6.422e^-6	0.018	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	21247399	3L_21247399_SNP [dm3] 3L_21254299_SNP [dm6]	C	A	6.422e^-6	0.018	INTRON Eip78C
3R	23224586	3R_23224586_SNP [dm3] 3R_27398864_SNP [dm6]	C	T	6.468e^-6	0.018	INTRON side
3R	1786787	3R_1786787_SNP [dm3] 3R_5961065_SNP [dm6]	A	T	6.487e^-6	0.018	UPSTREAM CG11373 INTERGENIC
3L	21100625	3L_21100625_SNP [dm3] 3L_21107525_SNP [dm6]	G	A	6.502e^-6	0.018	INTRON ko	regulatory region REDfly_CRMs
3L	21194830	3L_21194830_SNP [dm3] 3L_21201730_SNP [dm6]	A	C	6.502e^-6	0.018	INTRON CG33054 & 1 other	TF binding site mE1_TFBS_bab1
3L	21213170	3L_21213170_SNP [dm3] 3L_21220070_SNP [dm6]	A	G	6.502e^-6	0.018	UPSTREAM CG43219 DOWNSTREAM Ilk INTERGENIC
3L	21716364	3L_21716364_SNP [dm3] 3L_21723264_SNP [dm6]	A	G	6.502e^-6	0.018	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	21716477	3L_21716477_SNP [dm3] 3L_21723377_SNP [dm6]	A	T	6.502e^-6	0.018	DOWNSTREAM CG11247 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	21726664	3L_21726664_SNP [dm3] 3L_21733564_SNP [dm6]	A	T	6.502e^-6	0.018	UPSTREAM CG14573 & 1 other INTERGENIC
3L	21730098	3L_21730098_SNP [dm3] 3L_21736998_SNP [dm6]	T	G	6.502e^-6	0.018	DOWNSTREAM CR43888 & 1 other INTERGENIC	transposable element FlyBase
3L	21735503	3L_21735503_SNP [dm3] 3L_21742403_SNP [dm6]	T	A	6.502e^-6	0.018	UTR_3_PRIME CG14572 DOWNSTREAM CG14565	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
2R	8860982	2R_8860982_SNP [dm3] 2R_12973477_SNP [dm6]	A	G	6.504e^-6	0.018	INTRON Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	5460206	3R_5460206_SNP [dm3] 3R_9634484_SNP [dm6]	G	C	6.521e^-6	0.018	DOWNSTREAM SpdS INTRON Scm	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	4243979	3R_4243979_SNP [dm3] 3R_8418257_SNP [dm6]	T	G	6.556e^-6	0.018	INTRON CG45263
2L	1396403	2L_1396403_SNP [dm3] 2L_1396403_SNP [dm6]	C	T	6.603e^-6	0.018	INTRON lea	TF binding site BDTNP1_TFBS_da
2L	1551871	2L_1551871_SNP [dm3] 2L_1551871_SNP [dm6]	G	A	6.620e^-6	0.018	INTERGENIC
X	5338051	X_5338051_SNP [dm3] X_5444018_SNP [dm6]	G	A	6.715e^-6	0.018	INTERGENIC
2R	14147727	2R_14147727_DEL [dm3] 2R_18260222_DEL [dm6]	CTC	AG	6.906e^-6	0.018	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	521879	3L_521879_SNP [dm3] 3L_521879_SNP [dm6]	T	G	6.935e^-6	0.019	INTRON klar
2R	12720025	2R_12720025_SNP [dm3] 2R_16832520_SNP [dm6]	A	T	6.989e^-6	0.019	EXON CR43650	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	12380084	X_12380084_SNP [dm3] X_12486051_SNP [dm6]	C	T	7.025e^-6	0.019	UPSTREAM Cpr11A INTERGENIC
3R	10789104	3R_10789104_SNP [dm3] 3R_14963382_SNP [dm6]	A	G	7.051e^-6	0.019	INTERGENIC
3R	10789177	3R_10789177_SNP [dm3] 3R_14963455_SNP [dm6]	G	A	7.094e^-6	0.019	INTERGENIC
X	2378907	X_2378907_SNP [dm3] X_2484874_SNP [dm6]	T	G	7.140e^-6	0.019	INTRON trol
2R	6822189	2R_6822189_SNP [dm3] 2R_10934684_SNP [dm6]	A	G	7.199e^-6	0.019	INTERGENIC
X	18005802	X_18005802_SNP [dm3] X_18111769_SNP [dm6]	G	A	7.199e^-6	0.019	INTRON wupA
2L	19906428	2L_19906428_SNP [dm3] 2L_19906428_SNP [dm6]	G	A	7.234e^-6	0.019	INTRON sick
2L	20401223	2L_20401223_SNP [dm3] 2L_20401223_SNP [dm6]	C	G	7.279e^-6	0.019	INTRON CG10947
3R	10035076	3R_10035076_SNP [dm3] 3R_14209354_SNP [dm6]	T	G	7.295e^-6	0.019	INTRON Dop1R1
2L	8928084	2L_8928084_SNP [dm3] 2L_8928084_SNP [dm6]	G	C	7.303e^-6	0.019	NON_SYNONYMOUS_CODING CG34398 INTRON CG34398	TF binding site mE1_TFBS_cad
3R	3755483	3R_3755483_SNP [dm3] 3R_7929761_SNP [dm6]	C	T	7.325e^-6	0.019	INTRON dsx	TF binding site mE1_TFBS_cad mE1_TFBS_GATAe
X	10008518	X_10008518_SNP [dm3] X_10114485_SNP [dm6]	G	A	7.360e^-6	0.019	INTRON RhoU EXON CR44894	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6638574	2R_6638574_SNP [dm3] 2R_10751069_SNP [dm6]	G	A	7.393e^-6	0.019	INTRON CG33144
3L	2809953	3L_2809953_SNP [dm3] 3L_2809953_SNP [dm6]	C	T	7.445e^-6	0.019	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	21435585	3L_21435585_SNP [dm3] 3L_21442485_SNP [dm6]	A	G	7.495e^-6	0.02	SYNONYMOUS_CODING CG5656	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	884366	2R_884366_SNP [dm3] 2R_4996861_SNP [dm6]	A	C	7.533e^-6	0.02	INTRON Ir41a
3L	8953686	3L_8953686_SNP [dm3] 3L_8960586_SNP [dm6]	C	T	7.560e^-6	0.02	SYNONYMOUS_CODING CG13313 DOWNSTREAM CG5660	TF binding site BDTNP1_TFBS_sna
3R	2347830	3R_2347830_SNP [dm3] 3R_6522108_SNP [dm6]	A	T	7.603e^-6	0.02	INTERGENIC
2L	1288076	2L_1288076_SNP [dm3] 2L_1288076_SNP [dm6]	G	A	7.698e^-6	0.02	INTRON robo3
X	16278837	X_16278837_SNP [dm3] X_16384804_SNP [dm6]	G	A	7.698e^-6	0.02	UTR_5_PRIME CG9992 UPSTREAM CG9992 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	10975710	3R_10975710_SNP [dm3] 3R_15149988_SNP [dm6]	A	G	7.757e^-6	0.02	UPSTREAM Gyc88E INTERGENIC
2L	7580497	2L_7580497_INS [dm3] 2L_7580497_INS [dm6]	A	AGTGTTAATGTTTA...	7.768e^-6	0.02	INTERGENIC
3L	1475267	3L_1475267_SNP [dm3] 3L_1475267_SNP [dm6]	C	A	7.800e^-6	0.02	UPSTREAM Ptp61F DOWNSTREAM stet INTERGENIC
3L	9331424	3L_9331424_SNP [dm3] 3L_9338324_SNP [dm6]	T	A	7.813e^-6	0.02	UTR_3_PRIME PGRP-LA UPSTREAM PGRP-LC DOWNSTREAM PGRP-LA
2L	3665036	2L_3665036_SNP [dm3] 2L_3665036_SNP [dm6]	A	C	7.822e^-6	0.02	INTRON CG34340
2L	18510032	2L_18510032_SNP [dm3] 2L_18510032_SNP [dm6]	C	T	7.844e^-6	0.02	INTRON CG10178
2L	18106024	2L_18106024_SNP [dm3] 2L_18106024_SNP [dm6]	T	C	7.847e^-6	0.02	INTERGENIC
2L	9417504	2L_9417504_SNP [dm3] 2L_9417504_SNP [dm6]	T	G	7.870e^-6	0.02	INTRON Mco1
2L	16728148	2L_16728148_SNP [dm3] 2L_16728148_SNP [dm6]	G	A	7.881e^-6	0.02	UPSTREAM VhaSFD EXON CR43671	TF binding site mE1_TFBS_ttk
X	10283806	X_10283806_INS [dm3] X_10389773_INS [dm6]	C	CC	7.914e^-6	0.02	INTRON flw
X	9814087	X_9814087_SNP [dm3] X_9920054_SNP [dm6]	T	C	7.936e^-6	0.02	INTERGENIC
X	11072338	X_11072338_SNP [dm3] X_11178305_SNP [dm6]	A	T	7.952e^-6	0.02	INTERGENIC
3L	21556375	3L_21556375_SNP [dm3] 3L_21563275_SNP [dm6]	T	C	7.985e^-6	0.02	INTERGENIC
X	9691021	X_9691021_SNP [dm3] X_9796988_SNP [dm6]	T	A	8.007e^-6	0.02	INTRON CG32698
3L	4731322	3L_4731322_SNP [dm3] 3L_4731322_SNP [dm6]	C	T	8.038e^-6	0.02	INTRON RhoGEF64C
2R	14282913	2R_14282913_SNP [dm3] 2R_18395408_SNP [dm6]	A	G	8.097e^-6	0.021	DOWNSTREAM Idgf5 INTERGENIC
X	5337335	X_5337335_SNP [dm3] X_5443302_SNP [dm6]	G	A	8.124e^-6	0.021	INTERGENIC
2L	6567161	2L_6567161_SNP [dm3] 2L_6567161_SNP [dm6]	A	C	8.179e^-6	0.021	UPSTREAM CG13766 INTERGENIC
3R	6564322	3R_6564322_SNP [dm3] 3R_10738600_SNP [dm6]	G	A	8.247e^-6	0.021	SYNONYMOUS_CODING TkR86C INTRON TkR86C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5260437	2L_5260437_SNP [dm3] 2L_5260437_SNP [dm6]	C	T	8.364e^-6	0.021	DOWNSTREAM CR44744 INTRON tkv
X	14953035	X_14953035_SNP [dm3] X_15059002_SNP [dm6]	G	A	8.409e^-6	0.021	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2L	1550508	2L_1550508_SNP [dm3] 2L_1550508_SNP [dm6]	C	T	8.516e^-6	0.021	INTERGENIC	TF binding site mE1_TFBS_inv
2L	7102564	2L_7102564_SNP [dm3] 2L_7102564_SNP [dm6]	A	T	8.523e^-6	0.021	INTRON Pvf3
X	10116435	X_10116435_SNP [dm3] X_10222402_SNP [dm6]	T	G	8.658e^-6	0.022	SYNONYMOUS_CODING CG34408 UPSTREAM CG34408
3L	4001087	3L_4001087_SNP [dm3] 3L_4001087_SNP [dm6]	T	C	8.729e^-6	0.022	INTERGENIC
2R	17809282	2R_17809282_SNP [dm3] 2R_21921777_SNP [dm6]	C	T	8.779e^-6	0.022	INTRON Fili	TF binding site mE1_TFBS_inv
3L	11522388	3L_11522388_SNP [dm3] 3L_11529288_SNP [dm6]	T	G	8.805e^-6	0.022	INTRON Mob2
3R	5451133	3R_5451133_SNP [dm3] 3R_9625411_SNP [dm6]	G	A	8.825e^-6	0.022	DOWNSTREAM CG8312 INTRON CG9427	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6414709	2L_6414709_SNP [dm3] 2L_6414709_SNP [dm6]	A	T	8.890e^-6	0.022	UTR_3_PRIME CG13982 DOWNSTREAM Tig & 1 other
3L	4732162	3L_4732162_SNP [dm3] 3L_4732162_SNP [dm6]	G	T	8.893e^-6	0.022	INTRON RhoGEF64C
2L	7507852	2L_7507852_SNP [dm3] 2L_7507852_SNP [dm6]	C	T	8.908e^-6	0.022	INTRON RapGAP1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	7508143	2L_7508143_SNP [dm3] 2L_7508143_SNP [dm6]	T	C	8.908e^-6	0.022	INTRON RapGAP1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	10833222	2L_10833222_SNP [dm3] 2L_10833222_SNP [dm6]	T	A	8.921e^-6	0.022	INTRON Nos
2L	4111492	2L_4111492_SNP [dm3] 2L_4111492_SNP [dm6]	G	C	8.935e^-6	0.022	INTRON ed
4	860223	4_860223_SNP [dm3] 4_839597_SNP [dm6]	C	A	8.938e^-6	0.022	INTRON fd102C
2L	1286269	2L_1286269_SNP [dm3] 2L_1286269_SNP [dm6]	C	T	8.940e^-6	0.022	SYNONYMOUS_CODING robo3	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	7508753	2L_7508753_SNP [dm3] 2L_7508753_SNP [dm6]	C	G	8.991e^-6	0.022	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	482705	2L_482705_SNP [dm3] 2L_482705_SNP [dm6]	T	C	8.997e^-6	0.022	INTRON ush	TF binding site mE1_TFBS_inv
X	17055592	X_17055592_SNP [dm3] X_17161559_SNP [dm6]	C	T	9.019e^-6	0.022	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	8164881	2R_8164881_SNP [dm3] 2R_12277376_SNP [dm6]	T	A	9.080e^-6	0.022	UTR_3_PRIME Cam DOWNSTREAM Cam
2R	4340277	2R_4340277_SNP [dm3] 2R_8452772_SNP [dm6]	C	T	9.088e^-6	0.022	UPSTREAM Mal-A1 & 1 other INTERGENIC
3L	8026504	3L_8026504_SNP [dm3] 3L_8033404_SNP [dm6]	A	C	9.088e^-6	0.022	INTRON nmo	TF binding site mE1_TFBS_HSA
3L	8026513	3L_8026513_SNP [dm3] 3L_8033413_SNP [dm6]	A	T	9.088e^-6	0.022	INTRON nmo	TF binding site mE1_TFBS_HSA
X	15339659	X_15339659_SNP [dm3] X_15445626_SNP [dm6]	C	T	9.133e^-6	0.022	DOWNSTREAM Scamp INTERGENIC
2L	7114757	2L_7114757_INS [dm3] 2L_7114757_INS [dm6]	T	TTGTCAAAACCCCCCCCTT...	9.153e^-6	0.022	INTRON Pvf3
X	12138323	X_12138323_SNP [dm3] X_12244290_SNP [dm6]	C	G	9.153e^-6	0.022	INTRON Ten-a
2R	15318278	2R_15318278_SNP [dm3] 2R_19430773_SNP [dm6]	T	A	9.166e^-6	0.022	UTR_3_PRIME Fak DOWNSTREAM CalpA
2L	5332579	2L_5332579_SNP [dm3] 2L_5332579_SNP [dm6]	C	T	9.199e^-6	0.022	UTR_5_PRIME fusl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	21472830	3L_21472830_SNP [dm3] 3L_21479730_SNP [dm6]	C	T	9.235e^-6	0.022	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	21474467	3L_21474467_SNP [dm3] 3L_21481367_SNP [dm6]	G	C	9.235e^-6	0.022	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10094324	3R_10094324_SNP [dm3] 3R_14268602_SNP [dm6]	A	T	9.235e^-6	0.022	SYNONYMOUS_CODING trx	TF binding site mE1_TFBS_cad
3L	21635861	3L_21635861_SNP [dm3] 3L_21642761_SNP [dm6]	G	A	9.276e^-6	0.022	DOWNSTREAM Atox1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	13103705	2L_13103705_DEL [dm3] 2L_13103705_DEL [dm6]	AT	A	9.289e^-6	0.022	UPSTREAM CR45461 INTERGENIC
X	21867550	X_21867550_SNP [dm3] X_22465714_SNP [dm6]	T	A	9.344e^-6	0.023	UPSTREAM CG14619 INTRON CG14619
3R	2537745	3R_2537745_SNP [dm3] 3R_6712023_SNP [dm6]	C	T	9.352e^-6	0.023	INTRON pb	regulatory region REDfly_CRMs
3L	6807742	3L_6807742_SNP [dm3] 3L_6814642_SNP [dm6]	G	T	9.519e^-6	0.023	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	6350717	X_6350717_SNP [dm3] X_6456684_SNP [dm6]	G	C	9.534e^-6	0.023	INTRON CG42340
3L	21645724	3L_21645724_SNP [dm3] 3L_21652624_SNP [dm6]	G	A	9.541e^-6	0.023	INTRON CG43980	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	4731302	3L_4731302_SNP [dm3] 3L_4731302_SNP [dm6]	C	A	9.627e^-6	0.023	INTRON RhoGEF64C
2L	3350734	2L_3350734_SNP [dm3] 2L_3350734_SNP [dm6]	A	G	9.669e^-6	0.023	INTRON E23
3L	2793394	3L_2793394_SNP [dm3] 3L_2793394_SNP [dm6]	C	T	9.693e^-6	0.023	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4239799	3R_4239799_SNP [dm3] 3R_8414077_SNP [dm6]	T	A	9.731e^-6	0.023	INTRON CG45263
3R	9733756	3R_9733756_SNP [dm3] 3R_13908034_SNP [dm6]	C	A	9.773e^-6	0.023	INTERGENIC
X	9933473	X_9933473_SNP [dm3] X_10039440_SNP [dm6]	C	T	9.778e^-6	0.023	SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_inv
2L	1029832	2L_1029832_SNP [dm3] 2L_1029832_SNP [dm6]	C	T	9.835e^-6	0.023	INTRON IA-2
3L	4471994	3L_4471994_SNP [dm3] 3L_4471994_SNP [dm6]	A	T	9.915e^-6	0.024	SYNONYMOUS_CODING CG32248 DOWNSTREAM CG32249
X	11072331	X_11072331_SNP [dm3] X_11178298_SNP [dm6]	G	A	9.947e^-6	0.024	INTERGENIC
2L	6616805	2L_6616805_DEL [dm3] 2L_6616805_DEL [dm6]	AA	A	9.967e^-6	0.024	UTR_3_PRIME CG11050 DOWNSTREAM CG11320
3R	5442821	3R_5442821_SNP [dm3] 3R_9617099_SNP [dm6]	G	A	9.976e^-6	0.024	INTRON CG8312
3R	10834774	3R_10834774_SNP [dm3] 3R_15009052_SNP [dm6]	T	A	1.004e^-5	0.024	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13102365	2R_13102365_SNP [dm3] 2R_17214860_SNP [dm6]	C	T	1.005e^-5	0.024	INTERGENIC
2L	8230204	2L_8230204_SNP [dm3] 2L_8230204_SNP [dm6]	T	C	1.012e^-5	0.024	UTR_5_PRIME Pvr
2L	10573524	2L_10573524_SNP [dm3] 2L_10573524_SNP [dm6]	G	T	1.021e^-5	0.024	INTRON Trim9
2L	19906433	2L_19906433_SNP [dm3] 2L_19906433_SNP [dm6]	C	G	1.033e^-5	0.024	INTRON sick
3L	8094454	3L_8094454_SNP [dm3] 3L_8101354_SNP [dm6]	A	C	1.034e^-5	0.024	INTRON Ect4
3R	5474860	3R_5474860_SNP [dm3] 3R_9649138_SNP [dm6]	A	T	1.036e^-5	0.024	NON_SYNONYMOUS_CODING Dh44
2L	18612367	2L_18612367_SNP [dm3] 2L_18612367_SNP [dm6]	T	A	1.037e^-5	0.024	UPSTREAM Atac2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	15345526	X_15345526_SNP [dm3] X_15451493_SNP [dm6]	C	A	1.041e^-5	0.024	SYNONYMOUS_CODING Ahcy13 UTR_5_PRIME Ahcy13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	5457198	3R_5457198_SNP [dm3] 3R_9631476_SNP [dm6]	A	G	1.044e^-5	0.024	UPSTREAM SpdS & 1 other DOWNSTREAM CR45053 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8174686	2R_8174686_SNP [dm3] 2R_12287181_SNP [dm6]	G	A	1.048e^-5	0.024	INTRON CG42700
4	983148	4_983148_SNP [dm3] 4_962522_SNP [dm6]	C	T	1.050e^-5	0.024	SYNONYMOUS_CODING fuss EXON CR44030
3L	21435142	3L_21435142_INS [dm3] 3L_21442042_INS [dm6]	A	AT	1.061e^-5	0.025	UPSTREAM CG5664 DOWNSTREAM CG5656 INTERGENIC	transposable element FlyBase
2R	5435908	2R_5435908_SNP [dm3] 2R_9548403_SNP [dm6]	G	A	1.063e^-5	0.025	UPSTREAM CG1888 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6620071	2L_6620071_SNP [dm3] 2L_6620071_SNP [dm6]	G	A	1.072e^-5	0.025	DOWNSTREAM CR44913 INTRON CG11320
2L	11302220	2L_11302220_SNP [dm3] 2L_11302220_SNP [dm6]	C	G	1.079e^-5	0.025	INTERGENIC
2L	16727925	2L_16727925_SNP [dm3] 2L_16727925_SNP [dm6]	G	C	1.086e^-5	0.025	UPSTREAM VhaSFD DOWNSTREAM CR43671 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19227331	3L_19227331_SNP [dm3] 3L_19234231_SNP [dm6]	T	A	1.093e^-5	0.025	INTRON fz2	TF binding site mE1_TFBS_Trl
X	15342390	X_15342390_SNP [dm3] X_15448357_SNP [dm6]	G	A	1.096e^-5	0.025	INTRON Scamp
X	15342398	X_15342398_SNP [dm3] X_15448365_SNP [dm6]	G	A	1.096e^-5	0.025	INTRON Scamp
X	15345062	X_15345062_SNP [dm3] X_15451029_SNP [dm6]	A	T	1.096e^-5	0.025	INTRON Ahcy13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	15345316	X_15345316_SNP [dm3] X_15451283_SNP [dm6]	A	G	1.096e^-5	0.025	INTRON Ahcy13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	17289896	2R_17289896_SNP [dm3] 2R_21402391_SNP [dm6]	G	C	1.099e^-5	0.025	INTRON Sdc
2L	10308742	2L_10308742_SNP [dm3] 2L_10308742_SNP [dm6]	G	A	1.102e^-5	0.025	SYNONYMOUS_CODING Cdk5alpha DOWNSTREAM CG4968
2L	8848823	2L_8848823_SNP [dm3] 2L_8848823_SNP [dm6]	A	T	1.107e^-5	0.025	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6714923	2L_6714923_SNP [dm3] 2L_6714923_SNP [dm6]	T	A	1.137e^-5	0.026	UTR_5_PRIME AkhR INTRON AkhR
X	10848770	X_10848770_SNP [dm3] X_10954737_SNP [dm6]	A	G	1.140e^-5	0.026	UTR_5_PRIME Myo10A INTRON Myo10A
2L	7082817	2L_7082817_SNP [dm3] 2L_7082817_SNP [dm6]	G	C	1.141e^-5	0.026	INTRON Pvf2	TF binding site mE1_TFBS_cad
3L	21412478	3L_21412478_SNP [dm3] 3L_21419378_SNP [dm6]	C	A	1.148e^-5	0.026	INTRON rgn
2R	6972667	2R_6972667_SNP [dm3] 2R_11085162_SNP [dm6]	C	G	1.165e^-5	0.027	UPSTREAM CG43188 INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17464283	2R_17464283_DEL [dm3] 2R_21576778_DEL [dm6]	GCTGTTGCTG	G	1.180e^-5	0.027	UPSTREAM CG10440 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	16730354	2L_16730354_SNP [dm3] 2L_16730354_SNP [dm6]	T	C	1.182e^-5	0.027	NON_SYNONYMOUS_CODING CG31812 UPSTREAM CR43671 DOWNSTREAM CG17996 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	7441886	2R_7441886_INS [dm3] 2R_11554381_INS [dm6]	C	CAGAC	1.200e^-5	0.027	INTERGENIC
2R	11797447	2R_11797447_SNP [dm3] 2R_15909942_SNP [dm6]	A	C	1.216e^-5	0.028	INTRON sli	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16714720	2L_16714720_SNP [dm3] 2L_16714720_SNP [dm6]	C	T	1.217e^-5	0.028	INTRON CG31808
X	13524005	X_13524005_DEL [dm3] X_13629972_DEL [dm6]	AGATATGTATAA...	A	1.227e^-5	0.028	INTRON NFAT
2R	19360142	2R_19360142_SNP [dm3] 2R_23472619_SNP [dm6]	G	A	1.230e^-5	0.028	SYNONYMOUS_CODING Or59c UPSTREAM Or59b INTRON CG43795	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18426484	X_18426484_SNP [dm3] X_18532451_SNP [dm6]	T	C	1.235e^-5	0.028	INTRON Bx
2R	7587692	2R_7587692_SNP [dm3] 2R_11700187_SNP [dm6]	T	G	1.236e^-5	0.028	DOWNSTREAM Ir48b EXON Ir48a
2L	6607144	2L_6607144_SNP [dm3] 2L_6607144_SNP [dm6]	C	A	1.241e^-5	0.028	INTERGENIC
2R	10485914	2R_10485914_SNP [dm3] 2R_14598409_SNP [dm6]	G	T	1.243e^-5	0.028	SYNONYMOUS_CODING RpI1
X	15084787	X_15084787_SNP [dm3] X_15190754_SNP [dm6]	G	C	1.246e^-5	0.028	DOWNSTREAM CG43737 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12530384	X_12530384_SNP [dm3] X_12636351_SNP [dm6]	C	G	1.263e^-5	0.028	UPSTREAM mir-970 INTRON Tomosyn EXON mir-970
2R	17065689	2R_17065689_SNP [dm3] 2R_21178184_SNP [dm6]	C	T	1.274e^-5	0.029	UPSTREAM Pu INTRON Pu & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	16274564	X_16274564_SNP [dm3] X_16380531_SNP [dm6]	T	A	1.277e^-5	0.029	SPLICE_SITE_REGION Fur2 INTRON Fur2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	380585	2R_380585_SNP [dm3] 2R_4493080_SNP [dm6]	G	T	1.292e^-5	0.029	INTERGENIC	transposable element FlyBase
X	14953787	X_14953787_DEL [dm3] X_15059754_DEL [dm6]	GG	G	1.303e^-5	0.029	INTRON hiw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
2L	1288552	2L_1288552_SNP [dm3] 2L_1288552_SNP [dm6]	C	G	1.326e^-5	0.03	INTRON robo3
2L	8550885	2L_8550885_SNP [dm3] 2L_8550885_SNP [dm6]	G	T	1.345e^-5	0.03	INTRON Sema-1a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12380022	X_12380022_SNP [dm3] X_12485989_SNP [dm6]	T	A	1.346e^-5	0.03	UPSTREAM Cpr11A INTERGENIC
X	12380105	X_12380105_SNP [dm3] X_12486072_SNP [dm6]	T	C	1.346e^-5	0.03	UPSTREAM Cpr11A INTERGENIC
3L	21700229	3L_21700229_SNP [dm3] 3L_21707129_SNP [dm6]	G	A	1.351e^-5	0.03	UPSTREAM CG32447 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	1304071	2R_1304071_SNP [dm3] 2R_5416566_SNP [dm6]	T	C	1.357e^-5	0.03	INTRON laccase2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	848519	3L_848519_SNP [dm3] 3L_848519_SNP [dm6]	T	G	1.376e^-5	0.03	NON_SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	1389207	2R_1389207_SNP [dm3] 2R_5501702_SNP [dm6]	G	C	1.376e^-5	0.03	INTRON CG30438	transposable element FlyBase
X	11072365	X_11072365_SNP [dm3] X_11178332_SNP [dm6]	T	C	1.388e^-5	0.031	INTERGENIC
2L	6320128	2L_6320128_SNP [dm3] 2L_6320128_SNP [dm6]	C	T	1.389e^-5	0.031	INTRON Ddr
2R	11797835	2R_11797835_SNP [dm3] 2R_15910330_SNP [dm6]	C	T	1.401e^-5	0.031	INTRON sli	TF binding site mE1_TFBS_inv
2L	10869157	2L_10869157_INS [dm3] 2L_10869157_INS [dm6]	C	CGAGCTGTGTTGC...	1.404e^-5	0.031	INTERGENIC
X	10762338	X_10762338_DEL [dm3] X_10868305_DEL [dm6]	CCC	C	1.405e^-5	0.031	UPSTREAM CG2157 INTERGENIC
2R	15331237	2R_15331237_SNP [dm3] 2R_19443732_SNP [dm6]	G	T	1.406e^-5	0.031	UTR_3_PRIME RpL11 UPSTREAM Arl6 DOWNSTREAM snoRNA:Psi28S-2444 & 1 other
3L	8026526	3L_8026526_SNP [dm3] 3L_8033426_SNP [dm6]	C	T	1.407e^-5	0.031	INTRON nmo	TF binding site mE1_TFBS_HSA
X	2388022	X_2388022_SNP [dm3] X_2493989_SNP [dm6]	C	T	1.408e^-5	0.031	INTRON trol
X	11072329	X_11072329_SNP [dm3] X_11178296_SNP [dm6]	T	G	1.409e^-5	0.031	INTERGENIC
2L	11164915	2L_11164915_SNP [dm3] 2L_11164915_SNP [dm6]	G	A	1.414e^-5	0.031	INTRON Ca-beta
2L	11164921	2L_11164921_SNP [dm3] 2L_11164921_SNP [dm6]	A	T	1.414e^-5	0.031	INTRON Ca-beta
2L	8138346	2L_8138346_SNP [dm3] 2L_8138346_SNP [dm6]	C	G	1.419e^-5	0.031	NON_SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25277929	3R_25277929_SNP [dm3] 3R_29452207_SNP [dm6]	C	A	1.421e^-5	0.031	INTRON Ptp99A
2L	9194096	2L_9194096_DEL [dm3] 2L_9194096_DEL [dm6]	TGGGGAT	T	1.431e^-5	0.031	INTRON tai
2R	8720246	2R_8720246_SNP [dm3] 2R_12832741_SNP [dm6]	C	A	1.439e^-5	0.031	INTERGENIC
X	13100014	X_13100014_SNP [dm3] X_13205981_SNP [dm6]	G	A	1.440e^-5	0.031	INTRON sno
2R	17120313	2R_17120313_SNP [dm3] 2R_21232808_SNP [dm6]	G	A	1.464e^-5	0.032	INTRON ASPP
3R	5466017	3R_5466017_SNP [dm3] 3R_9640295_SNP [dm6]	A	T	1.468e^-5	0.032	UPSTREAM Dh44 INTRON Dh44
3L	10001041	3L_10001041_SNP [dm3] 3L_10007941_SNP [dm6]	G	T	1.469e^-5	0.032	INTRON dpr6
X	15345079	X_15345079_DEL [dm3] X_15451046_DEL [dm6]	AA	A	1.469e^-5	0.032	INTRON Ahcy13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	5449232	3R_5449232_SNP [dm3] 3R_9623510_SNP [dm6]	G	A	1.474e^-5	0.032	SYNONYMOUS_CODING CG8312	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1420841	3L_1420841_SNP [dm3] 3L_1420841_SNP [dm6]	A	C	1.478e^-5	0.032	DOWNSTREAM CG9173 INTRON Ptp61F
3L	3273474	3L_3273474_DEL [dm3] 3L_3273474_DEL [dm6]	GGTGTGTTGCCAT...	G	1.482e^-5	0.032	INTRON CG14960
X	5009284	X_5009284_SNP [dm3] X_5115251_SNP [dm6]	A	G	1.497e^-5	0.032	INTRON rg & 1 other
X	6957569	X_6957569_SNP [dm3] X_7063536_SNP [dm6]	A	G	1.497e^-5	0.032	INTRON CG12541
2L	681413	2L_681413_INS [dm3] 2L_681413_INS [dm6]	A	AA	1.505e^-5	0.032	INTRON ds
2L	714805	2L_714805_SNP [dm3] 2L_714805_SNP [dm6]	A	T	1.505e^-5	0.032	UTR_5_PRIME ds INTRON CR44988	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	8866347	2L_8866347_SNP [dm3] 2L_8866347_SNP [dm6]	G	A	1.505e^-5	0.032	SYNONYMOUS_CODING CG32983 UPSTREAM CG9483 DOWNSTREAM CG32988 EXON CR45260	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	4573863	2R_4573863_SNP [dm3] 2R_8686358_SNP [dm6]	C	G	1.505e^-5	0.032	INTERGENIC
3L	6626463	3L_6626463_SNP [dm3] 3L_6633363_SNP [dm6]	T	C	1.505e^-5	0.032	INTRON GluRIA
3R	4249440	3R_4249440_SNP [dm3] 3R_8423718_SNP [dm6]	A	T	1.505e^-5	0.032	INTRON CG45263
2L	9487200	2L_9487200_SNP [dm3] 2L_9487200_SNP [dm6]	G	T	1.505e^-5	0.032	INTERGENIC
4	1177847	4_1177847_SNP [dm3] 4_1157221_SNP [dm6]	G	T	1.506e^-5	0.032	INTRON CG32017 & 1 other	transposable element FlyBase
4	1214600	4_1214600_SNP [dm3] 4_1193974_SNP [dm6]	T	C	1.506e^-5	0.032	DOWNSTREAM CG33521 INTRON PIP4K
4	1227868	4_1227868_SNP [dm3] 4_1224142_SNP [dm6]	T	C	1.506e^-5	0.032	UTR_3_PRIME Mitf DOWNSTREAM Mitf & 1 other
2L	9419240	2L_9419240_SNP [dm3] 2L_9419240_SNP [dm6]	A	G	1.521e^-5	0.032	INTRON Mco1
2R	17258072	2R_17258072_SNP [dm3] 2R_21370567_SNP [dm6]	T	A	1.533e^-5	0.032	INTRON cv-2	TF binding site mE1_TFBS_cad
3L	9240258	3L_9240258_SNP [dm3] 3L_9247158_SNP [dm6]	C	T	1.542e^-5	0.033	INTERGENIC
2L	1550802	2L_1550802_SNP [dm3] 2L_1550802_SNP [dm6]	C	A	1.550e^-5	0.033	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	1786200	3R_1786200_SNP [dm3] 3R_5960478_SNP [dm6]	A	T	1.572e^-5	0.033	UTR_3_PRIME CG11373 UPSTREAM CG34113
X	10626072	X_10626072_SNP [dm3] X_10732039_SNP [dm6]	C	A	1.584e^-5	0.033	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	6304127	X_6304127_SNP [dm3] X_6410094_SNP [dm6]	C	G	1.601e^-5	0.034	INTERGENIC
2R	18438563	2R_18438563_SNP [dm3] 2R_22551058_SNP [dm6]	G	A	1.610e^-5	0.034	SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	21764645	3L_21764645_SNP [dm3] 3L_21771545_SNP [dm6]	G	C	1.617e^-5	0.034	DOWNSTREAM CG7370 INTRON CG42689
2R	3443925	2R_3443925_SNP [dm3] 2R_7556420_SNP [dm6]	G	A	1.631e^-5	0.034	INTRON Corin
2L	11517097	2L_11517097_SNP [dm3] 2L_11517097_SNP [dm6]	G	T	1.652e^-5	0.035	UPSTREAM CG4970 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	12182913	2R_12182913_SNP [dm3] 2R_16295408_SNP [dm6]	T	C	1.656e^-5	0.035	SYNONYMOUS_CODING Atg9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1551484	2L_1551484_SNP [dm3] 2L_1551484_SNP [dm6]	T	C	1.662e^-5	0.035	INTERGENIC
2R	10501233	2R_10501233_SNP [dm3] 2R_14613728_SNP [dm6]	A	T	1.666e^-5	0.035	NON_SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_sens
2L	9592232	2L_9592232_SNP [dm3] 2L_9592232_SNP [dm6]	C	T	1.667e^-5	0.035	DOWNSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3931250	3L_3931250_SNP [dm3] 3L_3931250_SNP [dm6]	C	A	1.673e^-5	0.035	INTRON Eip63F-1
2L	4611186	2L_4611186_DEL [dm3] 2L_4611186_DEL [dm6]	TA	T	1.674e^-5	0.035	INTRON dp
3L	21693867	3L_21693867_SNP [dm3] 3L_21700767_SNP [dm6]	T	A	1.682e^-5	0.035	INTRON CG32447
3R	10017709	3R_10017709_SNP [dm3] 3R_14191987_SNP [dm6]	G	A	1.705e^-5	0.035	INTRON Dop1R1
2L	13187131	2L_13187131_SNP [dm3] 2L_13187131_SNP [dm6]	C	T	1.705e^-5	0.035	SYNONYMOUS_CODING CG16974
2L	13193321	2L_13193321_INS [dm3] 2L_13193321_INS [dm6]	A	AATCATTTTTAATCGTTTTA...	1.705e^-5	0.035	INTRON Edem2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	11303325	2L_11303325_SNP [dm3] 2L_11303325_SNP [dm6]	T	C	1.706e^-5	0.035	INTERGENIC
X	12352683	X_12352683_SNP [dm3] X_12458650_SNP [dm6]	A	C	1.712e^-5	0.035	UPSTREAM CG15731 INTERGENIC
3R	8075619	3R_8075619_SNP [dm3] 3R_12249897_SNP [dm6]	T	A	1.714e^-5	0.035	INTERGENIC
2R	10999993	2R_10999993_SNP [dm3] 2R_15112488_SNP [dm6]	C	G	1.718e^-5	0.035	INTERGENIC
3R	25808576	3R_25808576_SNP [dm3] 3R_29982854_SNP [dm6]	G	A	1.720e^-5	0.035	UPSTREAM CG7896 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	16719882	2L_16719882_SNP [dm3] 2L_16719882_SNP [dm6]	G	T	1.722e^-5	0.035	UPSTREAM Cyt-c-p DOWNSTREAM Cyt-c-d INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	16720442	2L_16720442_SNP [dm3] 2L_16720442_SNP [dm6]	G	A	1.722e^-5	0.035	DOWNSTREAM Cyt-c-d INTRON Cyt-c-p	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16720852	2L_16720852_SNP [dm3] 2L_16720852_SNP [dm6]	C	A	1.722e^-5	0.035	INTRON Cyt-c-p	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	13974498	3R_13974498_INS [dm3] 3R_18148776_INS [dm6]	A	AA	1.731e^-5	0.036	INTERGENIC
2L	16735350	2L_16735350_SNP [dm3] 2L_16735350_SNP [dm6]	A	G	1.731e^-5	0.036	SYNONYMOUS_CODING glu
2L	4313612	2L_4313612_SNP [dm3] 2L_4313612_SNP [dm6]	A	G	1.747e^-5	0.036	INTRON tutl
X	10254028	X_10254028_SNP [dm3] X_10359995_SNP [dm6]	G	C	1.748e^-5	0.036	NON_SYNONYMOUS_CODING l_1_G0289	TF binding site mE1_TFBS_chinmo
4	1141898	4_1141898_SNP [dm3] 4_1121272_SNP [dm6]	C	A	1.749e^-5	0.036	INTRON Cals	transposable element FlyBase
2L	16679098	2L_16679098_SNP [dm3] 2L_16679098_SNP [dm6]	T	C	1.752e^-5	0.036	UTR_3_PRIME her UPSTREAM grp & 1 other DOWNSTREAM mir-2497
3L	8912342	3L_8912342_SNP [dm3] 3L_8919242_SNP [dm6]	G	C	1.764e^-5	0.036	INTRON Tsp66E
2L	7514935	2L_7514935_SNP [dm3] 2L_7514935_SNP [dm6]	A	G	1.773e^-5	0.036	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da
X	13524003	X_13524003_SNP [dm3] X_13629970_SNP [dm6]	C	T	1.784e^-5	0.036	INTRON NFAT
X	11948808	X_11948808_INS [dm3] X_12054775_INS [dm6]	T	TT	1.787e^-5	0.036	DOWNSTREAM Uch-L5R INTRON CR43960 & 1 other
2L	8854307	2L_8854307_SNP [dm3] 2L_8854307_SNP [dm6]	A	G	1.792e^-5	0.036	INTERGENIC
3L	4947774	3L_4947774_SNP [dm3] 3L_4947774_SNP [dm6]	T	G	1.792e^-5	0.036	INTRON Con
X	10956010	X_10956010_SNP [dm3] X_11061977_SNP [dm6]	C	A	1.792e^-5	0.036	DOWNSTREAM CG1537 INTERGENIC
2L	16881039	2L_16881039_SNP [dm3] 2L_16881039_SNP [dm6]	A	T	1.793e^-5	0.036	NON_SYNONYMOUS_CODING CG34313 UTR_5_PRIME CG31743 UPSTREAM CG31743
4	850195	4_850195_SNP [dm3] 4_829569_SNP [dm6]	G	T	1.798e^-5	0.036	INTRON Sox102F
2L	12045659	2L_12045659_INS [dm3] 2L_12045659_INS [dm6]	T	TTCTCT	1.798e^-5	0.036	UTR_3_PRIME CG6770 UPSTREAM CG6785 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9939045	2R_9939045_INS [dm3] 2R_14051540_INS [dm6]	G	GAG	1.802e^-5	0.036	INTRON mam
3R	9451123	3R_9451123_SNP [dm3] 3R_13625401_SNP [dm6]	T	C	1.814e^-5	0.037	INTERGENIC
X	12884398	X_12884398_SNP [dm3] X_12990365_SNP [dm6]	A	G	1.819e^-5	0.037	INTRON rad
X	12884399	X_12884399_SNP [dm3] X_12990366_SNP [dm6]	T	C	1.819e^-5	0.037	INTRON rad
3R	10771720	3R_10771720_SNP [dm3] 3R_14945998_SNP [dm6]	A	C	1.829e^-5	0.037	INTERGENIC
2R	17289476	2R_17289476_SNP [dm3] 2R_21401971_SNP [dm6]	G	C	1.831e^-5	0.037	INTRON Sdc	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	3891178	3R_3891178_SNP [dm3] 3R_8065456_SNP [dm6]	G	C	1.849e^-5	0.037	INTRON mAChR-B
2L	19906680	2L_19906680_SNP [dm3] 2L_19906680_SNP [dm6]	A	G	1.853e^-5	0.037	INTRON sick
3L	1067109	3L_1067109_SNP [dm3] 3L_1067109_SNP [dm6]	G	T	1.885e^-5	0.038	INTRON bab1
2L	9254317	2L_9254317_SNP [dm3] 2L_9254317_SNP [dm6]	G	C	1.893e^-5	0.038	NON_SYNONYMOUS_CODING lectin-30A
2R	2517363	2R_2517363_SNP [dm3] 2R_6629858_SNP [dm6]	G	A	1.905e^-5	0.038	INTRON Vha16-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16876974	2L_16876974_SNP [dm3] 2L_16876974_SNP [dm6]	G	A	1.913e^-5	0.038	INTRON CR31781
X	10979060	X_10979060_SNP [dm3] X_11085027_SNP [dm6]	C	A	1.920e^-5	0.038	INTRON sev
X	10979063	X_10979063_SNP [dm3] X_11085030_SNP [dm6]	C	T	1.920e^-5	0.038	INTRON sev
X	10979066	X_10979066_SNP [dm3] X_11085033_SNP [dm6]	T	C	1.920e^-5	0.038	INTRON sev
2R	11366553	2R_11366553_SNP [dm3] 2R_15479048_SNP [dm6]	C	T	1.922e^-5	0.038	INTRON CG8180
2R	10889271	2R_10889271_SNP [dm3] 2R_15001766_SNP [dm6]	G	A	1.938e^-5	0.038	INTERGENIC
2R	17511235	2R_17511235_SNP [dm3] 2R_21623730_SNP [dm6]	A	T	1.943e^-5	0.038	NON_SYNONYMOUS_CODING PTP-ER	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	21586020	3L_21586020_DEL [dm3] 3L_21592920_DEL [dm6]	AA	A	1.966e^-5	0.038	INTRON TfAP-2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8378845	X_8378845_SNP [dm3] X_8484812_SNP [dm6]	T	A	1.966e^-5	0.038	UPSTREAM CG33223 DOWNSTREAM otu & 1 other INTERGENIC
3L	14502086	3L_14502086_SNP [dm3] 3L_14508986_SNP [dm6]	G	C	1.968e^-5	0.038	SYNONYMOUS_CODING bbg	TF binding site mE1_TFBS_sens
2L	13188494	2L_13188494_SNP [dm3] 2L_13188494_SNP [dm6]	C	T	1.978e^-5	0.038	SYNONYMOUS_CODING CG16974	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7000535	2L_7000535_SNP [dm3] 2L_7000535_SNP [dm6]	G	A	1.979e^-5	0.038	INTRON uif
2L	11515972	2L_11515972_SNP [dm3] 2L_11515972_SNP [dm6]	C	T	1.986e^-5	0.038	INTRON CG6509	TF binding site BDTNP1_TFBS_dl
X	2677944	X_2677944_SNP [dm3] X_2783911_SNP [dm6]	C	T	1.993e^-5	0.038	SYNONYMOUS_CODING CG32795 INTRON kirre	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20787222	2L_20787222_SNP [dm3] 2L_20787222_SNP [dm6]	T	G	1.993e^-5	0.038	UPSTREAM Pomp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc
2L	20791988	2L_20791988_DEL [dm3] 2L_20791988_DEL [dm6]	GCAAGAAAATCGT...	G	1.993e^-5	0.038	INTRON vari	TF binding site mE1_TFBS_Trl
2L	17521655	2L_17521655_SNP [dm3] 2L_17521655_SNP [dm6]	C	T	1.996e^-5	0.038	NON_SYNONYMOUS_CODING CG15143 INTRON Dhc36C
2L	16717519	2L_16717519_SNP [dm3] 2L_16717519_SNP [dm6]	C	A	1.998e^-5	0.038	INTRON Cyt-c-d
2L	21779797	2L_21779797_SNP [dm3] 2L_21779797_SNP [dm6]	A	T	2.000e^-5	0.038	INTRON CG31612
2L	4332270	2L_4332270_SNP [dm3] 2L_4332270_SNP [dm6]	C	T	2.000e^-5	0.038	DOWNSTREAM CG16857 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4332271	2L_4332271_SNP [dm3] 2L_4332271_SNP [dm6]	G	A	2.000e^-5	0.038	DOWNSTREAM CG16857 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4332328	2L_4332328_SNP [dm3] 2L_4332328_SNP [dm6]	T	C	2.000e^-5	0.038	DOWNSTREAM CG16857 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4332331	2L_4332331_SNP [dm3] 2L_4332331_SNP [dm6]	G	A	2.000e^-5	0.038	DOWNSTREAM CG16857 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4332337	2L_4332337_SNP [dm3] 2L_4332337_SNP [dm6]	A	T	2.000e^-5	0.038	DOWNSTREAM CG16857 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4332693	2L_4332693_SNP [dm3] 2L_4332693_SNP [dm6]	A	G	2.000e^-5	0.038	DOWNSTREAM CG16857 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4333225	2L_4333225_SNP [dm3] 2L_4333225_SNP [dm6]	T	C	2.000e^-5	0.038	UPSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4333706	2L_4333706_SNP [dm3] 2L_4333706_SNP [dm6]	T	C	2.000e^-5	0.038	UPSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
2L	4333720	2L_4333720_SNP [dm3] 2L_4333720_SNP [dm6]	G	A	2.000e^-5	0.038	UPSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
2L	4795363	2L_4795363_SNP [dm3] 2L_4795363_SNP [dm6]	C	T	2.000e^-5	0.038	SYNONYMOUS_CODING CG3294	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6941267	2L_6941267_SNP [dm3] 2L_6941267_SNP [dm6]	T	A	2.000e^-5	0.038	INTRON CG18304	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11503568	2R_11503568_SNP [dm3] 2R_15616063_SNP [dm6]	C	A	2.000e^-5	0.038	INTRON CG42524
2R	20104831	2R_20104831_SNP [dm3] 2R_24217308_SNP [dm6]	A	C	2.000e^-5	0.038	INTRON CG30419
2R	9965397	2R_9965397_SNP [dm3] 2R_14077892_SNP [dm6]	G	A	2.000e^-5	0.038	INTRON Prosap
2R	9965479	2R_9965479_SNP [dm3] 2R_14077974_SNP [dm6]	G	A	2.000e^-5	0.038	INTRON Prosap
X	14943469	X_14943469_SNP [dm3] X_15049436_SNP [dm6]	A	T	2.000e^-5	0.038	INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	14947098	X_14947098_SNP [dm3] X_15053065_SNP [dm6]	A	G	2.000e^-5	0.038	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14947153	X_14947153_SNP [dm3] X_15053120_SNP [dm6]	G	A	2.000e^-5	0.038	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11031227	2L_11031227_SNP [dm3] 2L_11031227_SNP [dm6]	T	A	2.001e^-5	0.038	INTRON Samuel	TF binding site mE1_TFBS_cad
X	15455469	X_15455469_DEL [dm3] X_15561436_DEL [dm6]	GCGGTTGG	G	2.011e^-5	0.039	INTERGENIC
2R	7043158	2R_7043158_SNP [dm3] 2R_11155653_SNP [dm6]	A	G	2.027e^-5	0.039	DOWNSTREAM CG13230 INTRON CG13229
X	12465082	X_12465082_SNP [dm3] X_12571049_SNP [dm6]	G	A	2.031e^-5	0.039	UTR_3_PRIME CG11138 DOWNSTREAM CG11138
2R	12964617	2R_12964617_SNP [dm3] 2R_17077112_SNP [dm6]	C	T	2.036e^-5	0.039	UPSTREAM CG30460 INTRON CG30460
2L	18922864	2L_18922864_SNP [dm3] 2L_18922864_SNP [dm6]	A	C	2.053e^-5	0.039	INTRON ssp3
X	5178574	X_5178574_SNP [dm3] X_5284541_SNP [dm6]	G	A	2.053e^-5	0.039	INTERGENIC
2R	10353330	2R_10353330_DEL [dm3] 2R_14465825_DEL [dm6]	AAAAGGAAGACAA...	A	2.060e^-5	0.039	UTR_3_PRIME Oaz
3L	15413476	3L_15413476_SNP [dm3] 3L_15420376_SNP [dm6]	T	C	2.062e^-5	0.039	INTERGENIC
3R	10045709	3R_10045709_SNP [dm3] 3R_14219987_SNP [dm6]	C	G	2.076e^-5	0.039	NON_SYNONYMOUS_CODING CG31326 SPLICE_SITE_REGION CG31326 DOWNSTREAM CG33109
X	14065620	X_14065620_SNP [dm3] X_14171587_SNP [dm6]	C	A	2.079e^-5	0.039	UTR_3_PRIME betaNACtes1 DOWNSTREAM CG12480
2L	1261977	2L_1261977_SNP [dm3] 2L_1261977_SNP [dm6]	G	A	2.079e^-5	0.039	INTRON robo3
2L	9347880	2L_9347880_SNP [dm3] 2L_9347880_SNP [dm6]	G	A	2.083e^-5	0.039	DOWNSTREAM CR44802 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	18338236	3L_18338236_SNP [dm3] 3L_18345136_SNP [dm6]	A	C	2.089e^-5	0.04	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	10331798	2L_10331798_SNP [dm3] 2L_10331798_SNP [dm6]	G	A	2.118e^-5	0.04	NON_SYNONYMOUS_CODING CG5037 UPSTREAM CG5375	TF binding site mE1_TFBS_cad
2L	7199543	2L_7199543_SNP [dm3] 2L_7199543_SNP [dm6]	T	A	2.137e^-5	0.04	INTRON CG4502
2R	17289401	2R_17289401_SNP [dm3] 2R_21401896_SNP [dm6]	G	A	2.152e^-5	0.041	INTRON Sdc	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17289534	2R_17289534_SNP [dm3] 2R_21402029_SNP [dm6]	A	C	2.152e^-5	0.041	INTRON Sdc	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	10812651	X_10812651_SNP [dm3] X_10918618_SNP [dm6]	G	C	2.164e^-5	0.041	INTRON CG43901	TF binding site mE1_TFBS_cad
3L	18436795	3L_18436795_SNP [dm3] 3L_18443695_SNP [dm6]	A	C	2.164e^-5	0.041	INTERGENIC
3L	18436797	3L_18436797_SNP [dm3] 3L_18443697_SNP [dm6]	T	A	2.164e^-5	0.041	INTERGENIC
2L	1063140	2L_1063140_SNP [dm3] 2L_1063140_SNP [dm6]	G	A	2.191e^-5	0.041	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8276701	2R_8276701_SNP [dm3] 2R_12389196_SNP [dm6]	T	G	2.216e^-5	0.041	INTRON Cpr49Ac	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8276719	2R_8276719_SNP [dm3] 2R_12389214_SNP [dm6]	A	T	2.216e^-5	0.041	INTRON Cpr49Ac	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8276725	2R_8276725_SNP [dm3] 2R_12389220_SNP [dm6]	A	C	2.216e^-5	0.041	INTRON Cpr49Ac	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8276752	2R_8276752_SNP [dm3] 2R_12389247_SNP [dm6]	C	T	2.216e^-5	0.041	INTRON Cpr49Ac	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10986500	3R_10986500_SNP [dm3] 3R_15160778_SNP [dm6]	C	G	2.219e^-5	0.041	INTRON Gyc88E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3R	3761085	3R_3761085_SNP [dm3] 3R_7935363_SNP [dm6]	T	G	2.232e^-5	0.042	UTR_3_PRIME dsx INTRON dsx	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3761086	3R_3761086_SNP [dm3] 3R_7935364_SNP [dm6]	C	T	2.232e^-5	0.042	UTR_3_PRIME dsx INTRON dsx	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7023556	2R_7023556_SNP [dm3] 2R_11136051_SNP [dm6]	A	T	2.233e^-5	0.042	INTRON BBS4
2R	18078183	2R_18078183_SNP [dm3] 2R_22190678_SNP [dm6]	C	A	2.235e^-5	0.042	SYNONYMOUS_CODING Swim DOWNSTREAM Vps35	TF binding site mE1_TFBS_cad mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

Microbiota_OTU137 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results