DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.577e^-12)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

7163 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	21079359	3L_21079359_SNP [dm3] 3L_21086259_SNP [dm6]	T	G	2.430e^-18	4.521e^-12	INTRON ko	regulatory region REDfly_CRMs
2R	17315862	2R_17315862_SNP [dm3] 2R_21428357_SNP [dm6]	C	G	7.168e^-18	6.668e^-12	INTRON Sdc
3L	18197536	3L_18197536_SNP [dm3] 3L_18204436_SNP [dm6]	T	C	3.193e^-16	1.980e^-10	DOWNSTREAM CG7320 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
2R	5979802	2R_5979802_SNP [dm3] 2R_10092297_SNP [dm6]	A	C	2.368e^-14	1.101e^-8	INTRON CG2269
2L	12154665	2L_12154665_SNP [dm3] 2L_12154665_SNP [dm6]	C	G	9.196e^-14	3.422e^-8	INTRON CG31760
3R	15828101	3R_15828101_SNP [dm3] 3R_20002379_SNP [dm6]	A	T	2.202e^-13	6.829e^-8	INTRON Hs6st	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5999899	3R_5999899_DEL [dm3] 3R_10174177_DEL [dm6]	TGAGCCGCGAGGCGAGAAGG...	T	6.562e^-13	1.744e^-7	INTRON CG12814
3R	9889548	3R_9889548_SNP [dm3] 3R_14063826_SNP [dm6]	A	C	2.176e^-12	5.061e^-7	INTRON foxo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3R	9889566	3R_9889566_SNP [dm3] 3R_14063844_SNP [dm6]	T	C	3.848e^-12	7.955e^-7	INTRON foxo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3R	5993505	3R_5993505_SNP [dm3] 3R_10167783_SNP [dm6]	C	T	9.420e^-12	1.753e^-6	INTRON Best1
3L	12885289	3L_12885289_SNP [dm3] 3L_12892189_SNP [dm6]	T	C	1.318e^-11	1.886e^-6	UPSTREAM CG14118 DOWNSTREAM CG43894 INTERGENIC
3L	12885291	3L_12885291_SNP [dm3] 3L_12892191_SNP [dm6]	C	A	1.318e^-11	1.886e^-6	UPSTREAM CG14118 DOWNSTREAM CG43894 INTERGENIC
3L	12885301	3L_12885301_SNP [dm3] 3L_12892201_SNP [dm6]	A	T	1.318e^-11	1.886e^-6	UPSTREAM CG14118 DOWNSTREAM CG43894 INTERGENIC
3R	5995523	3R_5995523_SNP [dm3] 3R_10169801_SNP [dm6]	A	T	1.496e^-11	1.988e^-6	INTRON Best1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	14131491	2R_14131491_SNP [dm3] 2R_18243986_SNP [dm6]	G	C	2.886e^-11	3.580e^-6	INTERGENIC
2R	6225205	2R_6225205_SNP [dm3] 2R_10337700_SNP [dm6]	A	G	7.716e^-11	8.972e^-6	INTRON CG42732
2R	14131714	2R_14131714_SNP [dm3] 2R_18244209_SNP [dm6]	A	C	9.775e^-11	1.070e^-5	INTERGENIC
2R	6225000	2R_6225000_SNP [dm3] 2R_10337495_SNP [dm6]	T	A	1.114e^-10	1.151e^-5	INTRON CG42732
X	18452847	X_18452847_SNP [dm3] X_18558814_SNP [dm6]	C	G	1.317e^-10	1.290e^-5	INTRON Bx
2R	8876027	2R_8876027_SNP [dm3] 2R_12988522_SNP [dm6]	C	G	1.394e^-10	1.297e^-5	INTERGENIC
3L	5211726	3L_5211726_SNP [dm3] 3L_5218626_SNP [dm6]	C	T	1.809e^-10	1.348e^-5	INTRON shep
3R	18574242	3R_18574242_SNP [dm3] 3R_22748520_SNP [dm6]	C	G	1.830e^-10	1.348e^-5	SYNONYMOUS_CODING CG31139 UPSTREAM CG17141 DOWNSTREAM rumi	TF binding site mE1_TFBS_cad
3L	2922495	3L_2922495_SNP [dm3] 3L_2922495_SNP [dm6]	T	C	1.857e^-10	1.348e^-5	INTRON Shab
2R	14537007	2R_14537007_SNP [dm3] 2R_18649502_SNP [dm6]	T	C	1.884e^-10	1.348e^-5	INTRON SP2637
3L	8077974	3L_8077974_SNP [dm3] 3L_8084874_SNP [dm6]	C	T	1.884e^-10	1.348e^-5	INTRON Ect4	TF binding site BDTNP1_TFBS_sna
3R	15825590	3R_15825590_SNP [dm3] 3R_19999868_SNP [dm6]	G	A	1.884e^-10	1.348e^-5	INTRON Hs6st
2R	8133071	2R_8133071_SNP [dm3] 2R_12245566_SNP [dm6]	C	T	2.272e^-10	1.565e^-5	UPSTREAM CG43244 INTERGENIC
2R	8120330	2R_8120330_SNP [dm3] 2R_12232825_SNP [dm6]	C	T	2.521e^-10	1.585e^-5	INTERGENIC
3R	12035671	3R_12035671_SNP [dm3] 3R_16209949_SNP [dm6]	T	C	2.624e^-10	1.585e^-5	UPSTREAM CR45638 DOWNSTREAM CR45640 & 1 other INTERGENIC
3L	8078005	3L_8078005_SNP [dm3] 3L_8084905_SNP [dm6]	T	C	2.793e^-10	1.585e^-5	INTRON Ect4	TF binding site BDTNP1_TFBS_sna
3R	21573660	3R_21573660_SNP [dm3] 3R_25747938_SNP [dm6]	G	A	2.975e^-10	1.585e^-5	INTRON LpR1
3R	21691431	3R_21691431_SNP [dm3] 3R_25865709_SNP [dm6]	G	T	3.034e^-10	1.585e^-5	INTRON CG5890
2R	8133130	2R_8133130_SNP [dm3] 2R_12245625_SNP [dm6]	G	C	3.089e^-10	1.585e^-5	UPSTREAM CG43244 INTERGENIC
2R	8133171	2R_8133171_SNP [dm3] 2R_12245666_SNP [dm6]	C	T	3.089e^-10	1.585e^-5	UPSTREAM CG43244 INTERGENIC
2R	8133273	2R_8133273_DEL [dm3] 2R_12245768_DEL [dm6]	ACT	A	3.089e^-10	1.585e^-5	DOWNSTREAM CR44315 INTERGENIC
3R	22143461	3R_22143461_SNP [dm3] 3R_26317739_SNP [dm6]	A	C	3.137e^-10	1.585e^-5	UPSTREAM CG33970 INTERGENIC
2L	5792290	2L_5792290_SNP [dm3] 2L_5792290_SNP [dm6]	G	A	3.236e^-10	1.585e^-5	INTRON CG9171
2R	14762848	2R_14762848_SNP [dm3] 2R_18875343_SNP [dm6]	G	A	3.270e^-10	1.585e^-5	INTERGENIC
2R	8133105	2R_8133105_SNP [dm3] 2R_12245600_SNP [dm6]	A	C	3.331e^-10	1.585e^-5	UPSTREAM CG43244 INTERGENIC
2R	14762846	2R_14762846_SNP [dm3] 2R_18875341_SNP [dm6]	G	A	3.433e^-10	1.585e^-5	INTERGENIC
3R	24771802	3R_24771802_SNP [dm3] 3R_28946080_SNP [dm6]	C	T	3.552e^-10	1.585e^-5	INTRON CG14521
2R	8623667	2R_8623667_SNP [dm3] 2R_12736162_SNP [dm6]	G	A	3.701e^-10	1.585e^-5	INTRON CG42663	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5995605	3R_5995605_SNP [dm3] 3R_10169883_SNP [dm6]	T	C	3.704e^-10	1.585e^-5	INTRON Best1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	8647954	2L_8647954_SNP [dm3] 2L_8647954_SNP [dm6]	A	G	3.748e^-10	1.585e^-5	INTRON Sema-1a
3R	12035634	3R_12035634_SNP [dm3] 3R_16209912_SNP [dm6]	A	T	3.891e^-10	1.609e^-5	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 & 1 other INTERGENIC
2R	4910740	2R_4910740_SNP [dm3] 2R_9023235_SNP [dm6]	G	A	4.333e^-10	1.753e^-5	NON_SYNONYMOUS_CODING CG8170	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	8892727	2R_8892727_SNP [dm3] 2R_13005222_SNP [dm6]	T	A	4.589e^-10	1.779e^-5	INTRON Su_z_2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15902881	3R_15902881_SNP [dm3] 3R_20077159_SNP [dm6]	G	A	4.589e^-10	1.779e^-5	INTERGENIC
X	12304374	X_12304374_SNP [dm3] X_12410341_SNP [dm6]	A	G	5.359e^-10	2.029e^-5	DOWNSTREAM CG2574 & 1 other INTERGENIC
3L	16205933	3L_16205933_SNP [dm3] 3L_16212833_SNP [dm6]	G	T	5.544e^-10	2.029e^-5	DOWNSTREAM CG13073 INTERGENIC	TF binding site mE1_TFBS_Stat92E
2R	5981461	2R_5981461_SNP [dm3] 2R_10093956_SNP [dm6]	A	G	5.562e^-10	2.029e^-5	NON_SYNONYMOUS_CODING CG2269	TF binding site mE1_TFBS_cad
2R	8623665	2R_8623665_INS [dm3] 2R_12736160_INS [dm6]	G	GTTGCCCAG	7.414e^-10	2.628e^-5	INTRON CG42663	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9268999	3R_9268999_SNP [dm3] 3R_13443277_SNP [dm6]	G	C	7.485e^-10	2.628e^-5	EXON CR45679
2R	5991218	2R_5991218_SNP [dm3] 2R_10103713_SNP [dm6]	T	A	8.900e^-10	3.066e^-5	UPSTREAM 14-3-3zeta INTRON 14-3-3zeta	TF binding site BDTNP1_TFBS_dl
2R	5992985	2R_5992985_INS [dm3] 2R_10105480_INS [dm6]	T	TA	9.107e^-10	3.081e^-5	INTRON 14-3-3zeta	TF binding site mE1_TFBS_cad
3R	9985696	3R_9985696_SNP [dm3] 3R_14159974_SNP [dm6]	G	A	9.972e^-10	3.313e^-5	NON_SYNONYMOUS_CODING CG31327
3L	18199313	3L_18199313_SNP [dm3] 3L_18206213_SNP [dm6]	T	C	1.154e^-9	3.768e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	5985471	2R_5985471_SNP [dm3] 2R_10097966_SNP [dm6]	T	C	1.301e^-9	4.173e^-5	SYNONYMOUS_CODING Jra DOWNSTREAM RpLP0-like	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2L	14715641	2L_14715641_SNP [dm3] 2L_14715641_SNP [dm6]	T	C	1.370e^-9	4.321e^-5	INTERGENIC
2R	14763347	2R_14763347_SNP [dm3] 2R_18875842_SNP [dm6]	C	T	1.440e^-9	4.466e^-5	INTERGENIC
3R	6007386	3R_6007386_SNP [dm3] 3R_10181664_SNP [dm6]	A	T	1.492e^-9	4.550e^-5	INTRON CG12814
3R	18215850	3R_18215850_SNP [dm3] 3R_22390128_SNP [dm6]	C	G	1.568e^-9	4.704e^-5	UTR_5_PRIME CG7059 UPSTREAM CG5379 & 1 other INTRON CG7059	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14434378	2R_14434378_SNP [dm3] 2R_18546873_SNP [dm6]	G	A	1.763e^-9	5.207e^-5	SYNONYMOUS_CODING Rgk2
2R	5984018	2R_5984018_SNP [dm3] 2R_10096513_SNP [dm6]	G	A	1.862e^-9	5.363e^-5	UTR_5_PRIME Jra UPSTREAM Jra DOWNSTREAM CG2269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
3L	2323208	3L_2323208_DEL [dm3] 3L_2323208_DEL [dm6]	TGA	T	1.878e^-9	5.363e^-5	INTRON MsR1
2R	5990060	2R_5990060_SNP [dm3] 2R_10102555_SNP [dm6]	G	C	1.903e^-9	5.363e^-5	UPSTREAM 14-3-3zeta INTRON 14-3-3zeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17315817	2R_17315817_SNP [dm3] 2R_21428312_SNP [dm6]	T	C	2.186e^-9	6.071e^-5	INTRON Sdc
3R	5997082	3R_5997082_SNP [dm3] 3R_10171360_SNP [dm6]	C	G	2.290e^-9	6.264e^-5	UTR_3_PRIME CG12814 UPSTREAM Best1	TF binding site BDTNP1_TFBS_dl
2L	11989738	2L_11989738_SNP [dm3] 2L_11989738_SNP [dm6]	G	T	2.435e^-9	6.565e^-5	SYNONYMOUS_CODING zuc UPSTREAM dgt2 DOWNSTREAM CG34163	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16950665	2R_16950665_SNP [dm3] 2R_21063160_SNP [dm6]	C	G	2.470e^-9	6.565e^-5	NON_SYNONYMOUS_CODING Cht8 DOWNSTREAM Cht12	TF binding site mE1_TFBS_chinmo
2R	14762835	2R_14762835_SNP [dm3] 2R_18875330_SNP [dm6]	T	A	2.576e^-9	6.749e^-5	INTERGENIC
2R	6225072	2R_6225072_DEL [dm3] 2R_10337567_DEL [dm6]	TC	G	3.033e^-9	7.837e^-5	INTRON CG42732
3L	2323186	3L_2323186_SNP [dm3] 3L_2323186_SNP [dm6]	T	A	3.315e^-9	8.115e^-5	INTRON MsR1
3L	2323190	3L_2323190_SNP [dm3] 3L_2323190_SNP [dm6]	G	C	3.315e^-9	8.115e^-5	INTRON MsR1
3L	2323192	3L_2323192_MNP [dm3] 3L_2323192_MNP [dm6]	TTAC	GCTT	3.315e^-9	8.115e^-5	INTRON MsR1
3L	2323203	3L_2323203_SNP [dm3] 3L_2323203_SNP [dm6]	T	C	3.315e^-9	8.115e^-5	INTRON MsR1
2R	18908798	2R_18908798_SNP [dm3] 2R_23021275_SNP [dm6]	A	G	3.469e^-9	8.381e^-5	INTRON twi & 1 other	TF binding site BDTNP1_TFBS_dl
3R	5996556	3R_5996556_SNP [dm3] 3R_10170834_SNP [dm6]	G	A	3.818e^-9	9.108e^-5	UPSTREAM Best1 DOWNSTREAM CG12814 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	3121944	3R_3121944_SNP [dm3] 3R_7296222_SNP [dm6]	C	A	4.544e^-9	1.069e^-4	INTRON rn
2R	7678655	2R_7678655_SNP [dm3] 2R_11791150_SNP [dm6]	T	A	4.597e^-9	1.069e^-4	INTRON ths	TF binding site BDTNP1_TFBS_dl
3L	2323197	3L_2323197_DEL [dm3] 3L_2323197_DEL [dm6]	AAAAT	A	4.885e^-9	1.122e^-4	INTRON MsR1
2R	15281279	2R_15281279_SNP [dm3] 2R_19393774_SNP [dm6]	G	T	5.416e^-9	1.229e^-4	SYNONYMOUS_CODING SdhA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10150358	3R_10150358_SNP [dm3] 3R_14324636_SNP [dm6]	C	T	5.727e^-9	1.284e^-4	SYNONYMOUS_CODING Afti	TF binding site mE1_TFBS_sens
3R	26063317	3R_26063317_SNP [dm3] 3R_30237595_SNP [dm6]	C	G	5.951e^-9	1.318e^-4	SPLICE_SITE_REGION CG43448 INTRON CG43448	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	600755	2L_600755_SNP [dm3] 2L_600755_SNP [dm6]	G	A	6.050e^-9	1.324e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18452799	X_18452799_SNP [dm3] X_18558766_SNP [dm6]	G	T	6.230e^-9	1.332e^-4	INTRON Bx
X	18452805	X_18452805_INS [dm3] X_18558772_INS [dm6]	C	CC	6.230e^-9	1.332e^-4	INTRON Bx
X	12304723	X_12304723_SNP [dm3] X_12410690_SNP [dm6]	G	A	6.721e^-9	1.421e^-4	DOWNSTREAM CG2574 & 1 other INTERGENIC
3R	9776501	3R_9776501_SNP [dm3] 3R_13950779_SNP [dm6]	A	G	7.167e^-9	1.484e^-4	SYNONYMOUS_CODING CG9926
3R	3798346	3R_3798346_SNP [dm3] 3R_7972624_SNP [dm6]	A	T	7.178e^-9	1.484e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23561416	3R_23561416_SNP [dm3] 3R_27735694_SNP [dm6]	A	G	7.817e^-9	1.598e^-4	UPSTREAM Ets98B INTERGENIC
2L	20074059	2L_20074059_SNP [dm3] 2L_20074059_SNP [dm6]	G	A	8.005e^-9	1.619e^-4	SYNONYMOUS_CODING pr DOWNSTREAM bwa	TF binding site mE1_TFBS_sens
3R	3797824	3R_3797824_SNP [dm3] 3R_7972102_SNP [dm6]	T	C	8.331e^-9	1.667e^-4	INTERGENIC
2L	15581654	2L_15581654_SNP [dm3] 2L_15581654_SNP [dm6]	T	C	1.007e^-8	1.893e^-4	INTRON kek3
2L	15581685	2L_15581685_SNP [dm3] 2L_15581685_SNP [dm6]	A	T	1.007e^-8	1.893e^-4	INTRON kek3
2L	15581747	2L_15581747_SNP [dm3] 2L_15581747_SNP [dm6]	T	C	1.007e^-8	1.893e^-4	INTRON kek3
2L	15581800	2L_15581800_SNP [dm3] 2L_15581800_SNP [dm6]	C	G	1.007e^-8	1.893e^-4	INTRON kek3
2L	15583531	2L_15583531_SNP [dm3] 2L_15583531_SNP [dm6]	A	T	1.007e^-8	1.893e^-4	UTR_3_PRIME kek3
2L	15584156	2L_15584156_SNP [dm3] 2L_15584156_SNP [dm6]	A	G	1.007e^-8	1.893e^-4	DOWNSTREAM kek3 INTERGENIC
3L	18199310	3L_18199310_SNP [dm3] 3L_18206210_SNP [dm6]	C	T	1.072e^-8	1.994e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	5995645	3R_5995645_SNP [dm3] 3R_10169923_SNP [dm6]	A	G	1.154e^-8	2.115e^-4	INTRON Best1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	4118575	2L_4118575_DEL [dm3] 2L_4118575_DEL [dm6]	GACG	G	1.160e^-8	2.115e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15596530	2L_15596530_SNP [dm3] 2L_15596530_SNP [dm6]	C	G	1.264e^-8	2.258e^-4	INTERGENIC
2L	728038	2L_728038_SNP [dm3] 2L_728038_SNP [dm6]	T	C	1.276e^-8	2.258e^-4	UPSTREAM Hsp60B INTERGENIC
2L	736286	2L_736286_SNP [dm3] 2L_736286_SNP [dm6]	T	G	1.276e^-8	2.258e^-4	DOWNSTREAM Eaat2 INTERGENIC
3R	6015414	3R_6015414_SNP [dm3] 3R_10189692_SNP [dm6]	T	C	1.287e^-8	2.258e^-4	UPSTREAM CG12814 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15583580	2L_15583580_SNP [dm3] 2L_15583580_SNP [dm6]	A	G	1.311e^-8	2.258e^-4	UTR_3_PRIME kek3 DOWNSTREAM kek3
2L	15583583	2L_15583583_DEL [dm3] 2L_15583583_DEL [dm6]	AAA	G	1.311e^-8	2.258e^-4	UTR_3_PRIME kek3 DOWNSTREAM kek3
3L	14752840	3L_14752840_INS [dm3] 3L_14759740_INS [dm6]	A	AA	1.333e^-8	2.272e^-4	DOWNSTREAM CG33260 INTRON Trl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	7386265	2L_7386265_SNP [dm3] 2L_7386265_SNP [dm6]	A	C	1.344e^-8	2.272e^-4	INTRON CG5149	TF binding site BDTNP1_TFBS_twi
3R	17014872	3R_17014872_SNP [dm3] 3R_21189150_SNP [dm6]	C	T	1.356e^-8	2.272e^-4	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	25908697	3R_25908697_SNP [dm3] 3R_30082975_SNP [dm6]	G	C	1.456e^-8	2.416e^-4	INTRON sima
2L	7386406	2L_7386406_SNP [dm3] 2L_7386406_SNP [dm6]	A	G	1.467e^-8	2.416e^-4	INTRON CG5149	TF binding site BDTNP1_TFBS_twi
3R	22774428	3R_22774428_INS [dm3] 3R_26948706_INS [dm6]	T	TATATAT	1.494e^-8	2.438e^-4	DOWNSTREAM CG6330 INTRON CG18472
2R	14131496	2R_14131496_SNP [dm3] 2R_18243991_SNP [dm6]	T	C	1.569e^-8	2.538e^-4	INTERGENIC
3R	25264781	3R_25264781_SNP [dm3] 3R_29439059_SNP [dm6]	A	G	1.592e^-8	2.553e^-4	INTRON Ptp99A
3R	5993723	3R_5993723_SNP [dm3] 3R_10168001_SNP [dm6]	A	T	1.656e^-8	2.634e^-4	INTRON Best1
2L	15585725	2L_15585725_SNP [dm3] 2L_15585725_SNP [dm6]	C	T	1.698e^-8	2.677e^-4	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	5011567	3L_5011567_SNP [dm3] 3L_5011567_SNP [dm6]	A	G	1.783e^-8	2.775e^-4	UTR_3_PRIME CG12027 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	14762834	2R_14762834_SNP [dm3] 2R_18875329_SNP [dm6]	T	G	1.792e^-8	2.775e^-4	INTERGENIC
2R	7678640	2R_7678640_SNP [dm3] 2R_11791135_SNP [dm6]	C	T	1.805e^-8	2.775e^-4	INTRON ths	TF binding site BDTNP1_TFBS_dl
2L	15585686	2L_15585686_SNP [dm3] 2L_15585686_SNP [dm6]	A	G	1.859e^-8	2.834e^-4	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4733497	3L_4733497_SNP [dm3] 3L_4733497_SNP [dm6]	C	G	1.958e^-8	2.962e^-4	INTRON RhoGEF64C
3R	17219794	3R_17219794_DEL [dm3] 3R_21394072_DEL [dm6]	CCAC	C	2.044e^-8	3.066e^-4	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	727321	2L_727321_SNP [dm3] 2L_727321_SNP [dm6]	G	A	2.199e^-8	3.274e^-4	INTERGENIC
2R	14132654	2R_14132654_DEL [dm3] 2R_18245149_DEL [dm6]	TCTCCAGTCT	T	2.355e^-8	3.469e^-4	DOWNSTREAM CR44420 INTERGENIC
3R	10157706	3R_10157706_SNP [dm3] 3R_14331984_SNP [dm6]	G	A	2.368e^-8	3.469e^-4	INTRON NK7.1
3R	24803953	3R_24803953_SNP [dm3] 3R_28978231_SNP [dm6]	T	C	2.413e^-8	3.484e^-4	INTERGENIC
2R	5056237	2R_5056237_SNP [dm3] 2R_9168732_SNP [dm6]	T	G	2.416e^-8	3.484e^-4	NON_SYNONYMOUS_CODING Rme-8	TF binding site mE1_TFBS_cad
2R	8424071	2R_8424071_SNP [dm3] 2R_12536566_SNP [dm6]	G	A	2.465e^-8	3.501e^-4	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8424072	2R_8424072_SNP [dm3] 2R_12536567_SNP [dm6]	G	A	2.465e^-8	3.501e^-4	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14133952	2R_14133952_SNP [dm3] 2R_18246447_SNP [dm6]	G	T	2.702e^-8	3.781e^-4	EXON CR44420	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	17777463	3L_17777463_SNP [dm3] 3L_17784363_SNP [dm6]	T	A	2.703e^-8	3.781e^-4	DOWNSTREAM CR44668 INTERGENIC
3R	5995319	3R_5995319_SNP [dm3] 3R_10169597_SNP [dm6]	T	A	3.113e^-8	4.298e^-4	INTRON Best1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	16820309	3L_16820309_SNP [dm3] 3L_16827209_SNP [dm6]	A	T	3.119e^-8	4.298e^-4	INTRON CG13024
2R	8424097	2R_8424097_SNP [dm3] 2R_12536592_SNP [dm6]	G	T	3.196e^-8	4.341e^-4	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8424098	2R_8424098_SNP [dm3] 2R_12536593_SNP [dm6]	T	C	3.196e^-8	4.341e^-4	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5081658	2R_5081658_SNP [dm3] 2R_9194153_SNP [dm6]	A	G	3.543e^-8	4.776e^-4	INTERGENIC
2L	13990665	2L_13990665_SNP [dm3] 2L_13990665_SNP [dm6]	G	T	3.936e^-8	5.220e^-4	INTRON rk
2L	4118582	2L_4118582_SNP [dm3] 2L_4118582_SNP [dm6]	C	A	3.956e^-8	5.220e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4118584	2L_4118584_SNP [dm3] 2L_4118584_SNP [dm6]	C	A	3.956e^-8	5.220e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18939412	3R_18939412_SNP [dm3] 3R_23113690_SNP [dm6]	C	T	4.163e^-8	5.454e^-4	UPSTREAM CG13830 DOWNSTREAM Rassf INTERGENIC
X	5846003	X_5846003_SNP [dm3] X_5951970_SNP [dm6]	C	T	4.588e^-8	5.969e^-4	UPSTREAM CG6048 DOWNSTREAM CG32755 INTERGENIC
2L	4793604	2L_4793604_SNP [dm3] 2L_4793604_SNP [dm6]	G	T	4.701e^-8	6.073e^-4	UPSTREAM CG3294 INTRON CG15630
3R	5994994	3R_5994994_SNP [dm3] 3R_10169272_SNP [dm6]	G	C	4.800e^-8	6.110e^-4	INTRON Best1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_zfh1
3L	18202542	3L_18202542_SNP [dm3] 3L_18209442_SNP [dm6]	A	T	5.050e^-8	6.110e^-4	INTERGENIC
2R	12734469	2R_12734469_SNP [dm3] 2R_16846964_SNP [dm6]	T	G	5.091e^-8	6.110e^-4	DOWNSTREAM CR44466 INTERGENIC
2R	5648378	2R_5648378_SNP [dm3] 2R_9760873_SNP [dm6]	T	C	5.091e^-8	6.110e^-4	INTRON trpl
3L	4393773	3L_4393773_SNP [dm3] 3L_4393773_SNP [dm6]	A	T	5.091e^-8	6.110e^-4	INTRON slow
3L	6812466	3L_6812466_SNP [dm3] 3L_6819366_SNP [dm6]	C	T	5.091e^-8	6.110e^-4	INTERGENIC
3R	18063147	3R_18063147_SNP [dm3] 3R_22237425_SNP [dm6]	T	C	5.091e^-8	6.110e^-4	INTRON SKIP
3R	18402272	3R_18402272_SNP [dm3] 3R_22576550_SNP [dm6]	C	G	5.091e^-8	6.110e^-4	INTRON CG33110
3R	19046820	3R_19046820_SNP [dm3] 3R_23221098_SNP [dm6]	T	G	5.091e^-8	6.110e^-4	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	23728308	3R_23728308_SNP [dm3] 3R_27902586_SNP [dm6]	T	A	5.091e^-8	6.110e^-4	INTRON CG34353
X	5507914	X_5507914_SNP [dm3] X_5613881_SNP [dm6]	A	G	5.091e^-8	6.110e^-4	SYNONYMOUS_CODING CG34435 DOWNSTREAM CG34434	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14132215	2R_14132215_SNP [dm3] 2R_18244710_SNP [dm6]	T	A	5.518e^-8	6.555e^-4	INTERGENIC
3R	25046166	3R_25046166_SNP [dm3] 3R_29220444_SNP [dm6]	C	T	5.532e^-8	6.555e^-4	SYNONYMOUS_CODING Ef1gamma DOWNSTREAM CR31044	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
X	13334461	X_13334461_DEL [dm3] X_13440428_DEL [dm6]	CTC	C	5.653e^-8	6.657e^-4	INTERGENIC
2L	7045696	2L_7045696_SNP [dm3] 2L_7045696_SNP [dm6]	C	A	5.708e^-8	6.680e^-4	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	5995598	3R_5995598_SNP [dm3] 3R_10169876_SNP [dm6]	G	A	5.905e^-8	6.755e^-4	INTRON Best1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	5643744	2R_5643744_SNP [dm3] 2R_9756239_SNP [dm6]	G	T	6.009e^-8	6.755e^-4	DOWNSTREAM CG1690 INTRON trpl
2L	16100927	2L_16100927_SNP [dm3] 2L_16100927_SNP [dm6]	A	G	6.035e^-8	6.755e^-4	INTERGENIC
2L	16100928	2L_16100928_SNP [dm3] 2L_16100928_SNP [dm6]	A	T	6.035e^-8	6.755e^-4	INTERGENIC
2L	16100932	2L_16100932_SNP [dm3] 2L_16100932_SNP [dm6]	A	G	6.035e^-8	6.755e^-4	INTERGENIC
2L	16100936	2L_16100936_SNP [dm3] 2L_16100936_SNP [dm6]	T	C	6.035e^-8	6.755e^-4	INTERGENIC
2R	14556399	2R_14556399_SNP [dm3] 2R_18668894_SNP [dm6]	G	A	6.047e^-8	6.755e^-4	INTRON edl
2R	18864964	2R_18864964_SNP [dm3] 2R_22977441_SNP [dm6]	A	T	6.063e^-8	6.755e^-4	INTERGENIC
X	13380182	X_13380182_SNP [dm3] X_13486149_SNP [dm6]	C	A	6.168e^-8	6.830e^-4	INTRON Neto
3L	10679921	3L_10679921_SNP [dm3] 3L_10686821_SNP [dm6]	C	T	6.283e^-8	6.911e^-4	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5979369	2R_5979369_SNP [dm3] 2R_10091864_SNP [dm6]	T	C	6.352e^-8	6.911e^-4	SYNONYMOUS_CODING CG2269 INTRON CG2269
2R	5979385	2R_5979385_SNP [dm3] 2R_10091880_SNP [dm6]	A	G	6.352e^-8	6.911e^-4	NON_SYNONYMOUS_CODING CG2269 INTRON CG2269
3L	1751711	3L_1751711_SNP [dm3] 3L_1751711_SNP [dm6]	C	T	6.400e^-8	6.922e^-4	SYNONYMOUS_CODING CG13921 DOWNSTREAM Cht2
2R	11056586	2R_11056586_SNP [dm3] 2R_15169081_SNP [dm6]	T	A	6.452e^-8	6.938e^-4	INTRON igl
2L	16100805	2L_16100805_SNP [dm3] 2L_16100805_SNP [dm6]	T	G	6.497e^-8	6.947e^-4	INTERGENIC
2R	8856789	2R_8856789_SNP [dm3] 2R_12969284_SNP [dm6]	G	A	6.731e^-8	7.151e^-4	SYNONYMOUS_CODING Psc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11344791	3L_11344791_SNP [dm3] 3L_11351691_SNP [dm6]	G	T	6.765e^-8	7.151e^-4	INTERGENIC
X	7742917	X_7742917_DEL [dm3] X_7848884_DEL [dm6]	TGG	T	6.809e^-8	7.157e^-4	INTERGENIC
X	18453062	X_18453062_INS [dm3] X_18559029_INS [dm6]	C	CTGCCTTGAGGAGC...	6.859e^-8	7.169e^-4	INTRON Bx
3L	21271668	3L_21271668_SNP [dm3] 3L_21278568_SNP [dm6]	A	G	6.941e^-8	7.175e^-4	INTRON AcCoAS
3L	7874851	3L_7874851_SNP [dm3] 3L_7881751_SNP [dm6]	A	G	6.941e^-8	7.175e^-4	INTRON CG32365
3R	19128970	3R_19128970_SNP [dm3] 3R_23303248_SNP [dm6]	C	A	7.206e^-8	7.399e^-4	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
3R	16720854	3R_16720854_SNP [dm3] 3R_20895132_SNP [dm6]	T	C	7.238e^-8	7.399e^-4	UTR_3_PRIME CG10830
3L	2990595	3L_2990595_SNP [dm3] 3L_2990595_SNP [dm6]	T	C	7.527e^-8	7.652e^-4	INTERGENIC
2L	16100949	2L_16100949_SNP [dm3] 2L_16100949_SNP [dm6]	T	G	7.649e^-8	7.683e^-4	INTERGENIC
X	12081141	X_12081141_SNP [dm3] X_12187108_SNP [dm6]	G	A	7.662e^-8	7.683e^-4	INTRON Ten-a
2L	16100781	2L_16100781_SNP [dm3] 2L_16100781_SNP [dm6]	A	T	7.723e^-8	7.683e^-4	INTERGENIC
2L	16100994	2L_16100994_SNP [dm3] 2L_16100994_SNP [dm6]	A	T	7.723e^-8	7.683e^-4	INTERGENIC
3L	10421693	3L_10421693_SNP [dm3] 3L_10428593_SNP [dm6]	G	A	8.572e^-8	8.483e^-4	INTERGENIC
3R	10163672	3R_10163672_SNP [dm3] 3R_14337950_SNP [dm6]	T	C	8.635e^-8	8.500e^-4	INTRON NK7.1
2L	11178164	2L_11178164_SNP [dm3] 2L_11178164_SNP [dm6]	G	T	8.751e^-8	8.522e^-4	UPSTREAM CG4788 INTRON Ca-beta	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6244916	2R_6244916_SNP [dm3] 2R_10357411_SNP [dm6]	T	C	8.752e^-8	8.522e^-4	UPSTREAM CG42733 INTRON CG42732
2R	19272907	2R_19272907_SNP [dm3] 2R_23385384_SNP [dm6]	G	A	8.795e^-8	8.522e^-4	UTR_5_PRIME CG30414 UPSTREAM CG30414 DOWNSTREAM CG30415
2L	19242395	2L_19242395_SNP [dm3] 2L_19242395_SNP [dm6]	A	T	8.868e^-8	8.548e^-4	INTERGENIC
3R	11531043	3R_11531043_SNP [dm3] 3R_15705321_SNP [dm6]	G	A	9.495e^-8	9.105e^-4	INTRON CG5404
3L	15650940	3L_15650940_SNP [dm3] 3L_15657840_SNP [dm6]	A	C	9.616e^-8	9.174e^-4	SYNONYMOUS_CODING Eig71Eg UPSTREAM Eig71Ef
3R	25907613	3R_25907613_SNP [dm3] 3R_30081891_SNP [dm6]	C	T	9.803e^-8	9.293e^-4	INTRON sima
3R	13784693	3R_13784693_SNP [dm3] 3R_17958971_SNP [dm6]	A	C	9.840e^-8	9.293e^-4	INTRON cpo
2L	6150074	2L_6150074_SNP [dm3] 2L_6150074_SNP [dm6]	G	T	1.011e^-7	9.501e^-4	INTERGENIC
3R	11531064	3R_11531064_SNP [dm3] 3R_15705342_SNP [dm6]	C	A	1.096e^-7	0.001	INTRON CG5404
X	10447721	X_10447721_SNP [dm3] X_10553688_SNP [dm6]	C	T	1.129e^-7	0.001	INTRON spri	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	12623587	2R_12623587_SNP [dm3] 2R_16736082_SNP [dm6]	A	G	1.149e^-7	0.001	DOWNSTREAM CG43104 INTERGENIC
2R	1762029	2R_1762029_SNP [dm3] 2R_5874524_SNP [dm6]	C	A	1.166e^-7	0.001	INTERGENIC
2R	1778118	2R_1778118_SNP [dm3] 2R_5890613_SNP [dm6]	C	T	1.166e^-7	0.001	INTERGENIC
2L	6028941	2L_6028941_SNP [dm3] 2L_6028941_SNP [dm6]	A	G	1.189e^-7	0.001	INTRON CG9109
2L	6028952	2L_6028952_MNP [dm3] 2L_6028952_MNP [dm6]	CCC	TAG	1.189e^-7	0.001	INTRON CG9109
2L	6028960	2L_6028960_SNP [dm3] 2L_6028960_SNP [dm6]	A	T	1.189e^-7	0.001	INTRON CG9109
2R	13746510	2R_13746510_SNP [dm3] 2R_17859005_SNP [dm6]	T	G	1.189e^-7	0.001	INTRON olf186-F
2R	17652395	2R_17652395_DEL [dm3] 2R_21764890_DEL [dm6]	AA	A	1.189e^-7	0.001	UPSTREAM CR43983 & 1 other DOWNSTREAM CR43984 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	1957454	2R_1957454_SNP [dm3] 2R_6069949_SNP [dm6]	A	T	1.189e^-7	0.001	DOWNSTREAM CR44131 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6317155	3L_6317155_SNP [dm3] 3L_6324055_SNP [dm6]	G	A	1.189e^-7	0.001	INTERGENIC
3L	6317156	3L_6317156_SNP [dm3] 3L_6324056_SNP [dm6]	C	T	1.189e^-7	0.001	INTERGENIC
3R	10036195	3R_10036195_SNP [dm3] 3R_14210473_SNP [dm6]	G	A	1.189e^-7	0.001	INTRON Dop1R1
3R	19286191	3R_19286191_SNP [dm3] 3R_23460469_SNP [dm6]	T	C	1.189e^-7	0.001	INTRON CG4374
3R	21350566	3R_21350566_SNP [dm3] 3R_25524844_SNP [dm6]	C	T	1.189e^-7	0.001	INTRON msi
3L	6370947	3L_6370947_SNP [dm3] 3L_6377847_SNP [dm6]	C	G	1.248e^-7	0.001	INTERGENIC
3R	14058763	3R_14058763_SNP [dm3] 3R_18233041_SNP [dm6]	A	G	1.248e^-7	0.001	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	14060074	3R_14060074_SNP [dm3] 3R_18234352_SNP [dm6]	C	T	1.248e^-7	0.001	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14060723	3R_14060723_SNP [dm3] 3R_18235001_SNP [dm6]	C	T	1.248e^-7	0.001	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21574370	3R_21574370_SNP [dm3] 3R_25748648_SNP [dm6]	G	A	1.248e^-7	0.001	INTRON LpR1
3R	3380882	3R_3380882_SNP [dm3] 3R_7555160_SNP [dm6]	C	T	1.248e^-7	0.001	INTERGENIC
X	10615505	X_10615505_SNP [dm3] X_10721472_SNP [dm6]	G	A	1.248e^-7	0.001	INTRON CG32676	TF binding site mE1_TFBS_sens
X	10615512	X_10615512_SNP [dm3] X_10721479_SNP [dm6]	G	A	1.248e^-7	0.001	INTRON CG32676	TF binding site mE1_TFBS_sens
X	9672313	X_9672313_SNP [dm3] X_9778280_SNP [dm6]	T	G	1.248e^-7	0.001	UPSTREAM CG1354 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
X	9179276	X_9179276_SNP [dm3] X_9285243_SNP [dm6]	C	A	1.254e^-7	0.001	INTRON lz	TF binding site BDTNP1_TFBS_dl
X	7742942	X_7742942_DEL [dm3] X_7848909_DEL [dm6]	AGG	A	1.275e^-7	0.001	INTERGENIC
3L	7801133	3L_7801133_SNP [dm3] 3L_7808033_SNP [dm6]	T	A	1.303e^-7	0.001	INTRON CG32369	TF binding site mE1_TFBS_Trl
2R	5990164	2R_5990164_SNP [dm3] 2R_10102659_SNP [dm6]	G	T	1.314e^-7	0.001	UPSTREAM 14-3-3zeta INTRON 14-3-3zeta
2R	5991429	2R_5991429_SNP [dm3] 2R_10103924_SNP [dm6]	C	T	1.314e^-7	0.001	UPSTREAM 14-3-3zeta INTRON 14-3-3zeta	TF binding site BDTNP1_TFBS_dl
2R	5998186	2R_5998186_SNP [dm3] 2R_10110681_SNP [dm6]	C	T	1.314e^-7	0.001	UPSTREAM Pfk DOWNSTREAM 14-3-3zeta INTRON Pfk
2R	5998429	2R_5998429_SNP [dm3] 2R_10110924_SNP [dm6]	A	G	1.314e^-7	0.001	UTR_5_PRIME Pfk INTRON Pfk
2L	12576041	2L_12576041_DEL [dm3] 2L_12576041_DEL [dm6]	AA	A	1.325e^-7	0.001	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17677719	2R_17677719_SNP [dm3] 2R_21790214_SNP [dm6]	G	A	1.362e^-7	0.001	SYNONYMOUS_CODING lox2
2R	17006087	2R_17006087_SNP [dm3] 2R_21118582_SNP [dm6]	C	T	1.370e^-7	0.001	UTR_5_PRIME CG9394 INTRON ktub	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	20358071	3L_20358071_DEL [dm3] 3L_20364971_DEL [dm6]	TATCGGATACT...	T	1.382e^-7	0.001	INTRON Toll-9
X	18452759	X_18452759_SNP [dm3] X_18558726_SNP [dm6]	G	T	1.411e^-7	0.001	INTRON Bx
X	18452771	X_18452771_SNP [dm3] X_18558738_SNP [dm6]	C	T	1.411e^-7	0.001	INTRON Bx
2L	13289597	2L_13289597_SNP [dm3] 2L_13289597_SNP [dm6]	C	T	1.411e^-7	0.001	UPSTREAM CG31729 & 1 other DOWNSTREAM Uvrag INTERGENIC	TF binding site mE1_TFBS_Ubx
3L	16820590	3L_16820590_SNP [dm3] 3L_16827490_SNP [dm6]	C	G	1.435e^-7	0.001	INTRON CG13024
2L	2836678	2L_2836678_SNP [dm3] 2L_2836678_SNP [dm6]	C	A	1.437e^-7	0.001	INTRON CG3119
2R	13746297	2R_13746297_SNP [dm3] 2R_17858792_SNP [dm6]	G	A	1.475e^-7	0.001	INTRON olf186-F
3R	14105327	3R_14105327_DEL [dm3] 3R_18279605_DEL [dm6]	AGA	A	1.495e^-7	0.001	UPSTREAM CG7142 INTRON eIF-1A
3R	17455708	3R_17455708_SNP [dm3] 3R_21629986_SNP [dm6]	G	T	1.495e^-7	0.001	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	12052562	3R_12052562_SNP [dm3] 3R_16226840_SNP [dm6]	T	C	1.500e^-7	0.001	INTRON tara
3R	7321230	3R_7321230_SNP [dm3] 3R_11495508_SNP [dm6]	G	T	1.500e^-7	0.001	INTERGENIC
3R	7321410	3R_7321410_SNP [dm3] 3R_11495688_SNP [dm6]	G	A	1.500e^-7	0.001	INTERGENIC
2L	1335071	2L_1335071_SNP [dm3] 2L_1335071_SNP [dm6]	G	A	1.508e^-7	0.001	UTR_3_PRIME CG5440 DOWNSTREAM CG5440
2R	19135837	2R_19135837_SNP [dm3] 2R_23248314_SNP [dm6]	C	A	1.531e^-7	0.001	UPSTREAM RpL22-like INTERGENIC
2R	5872444	2R_5872444_SNP [dm3] 2R_9984939_SNP [dm6]	A	G	1.545e^-7	0.001	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13269101	2R_13269101_SNP [dm3] 2R_17381596_SNP [dm6]	A	T	1.567e^-7	0.001	INTERGENIC
3R	23285090	3R_23285090_SNP [dm3] 3R_27459368_SNP [dm6]	C	T	1.567e^-7	0.001	INTERGENIC
3L	17919821	3L_17919821_SNP [dm3] 3L_17926721_SNP [dm6]	T	G	1.575e^-7	0.001	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18376097	3L_18376097_SNP [dm3] 3L_18382997_SNP [dm6]	A	C	1.580e^-7	0.001	INTERGENIC
3R	10031734	3R_10031734_SNP [dm3] 3R_14206012_SNP [dm6]	G	A	1.580e^-7	0.001	INTRON Dop1R1
3R	10032446	3R_10032446_MNP [dm3] 3R_14206724_MNP [dm6]	TAT	CGA	1.580e^-7	0.001	INTRON Dop1R1
3R	10032452	3R_10032452_DEL [dm3] 3R_14206730_DEL [dm6]	TTTAAACAAAAAACAT...	T	1.580e^-7	0.001	INTRON Dop1R1
2R	1637045	2R_1637045_SNP [dm3] 2R_5749540_SNP [dm6]	G	A	1.584e^-7	0.001	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14434199	2R_14434199_SNP [dm3] 2R_18546694_SNP [dm6]	G	A	1.602e^-7	0.001	INTRON Rgk2
2R	14901249	2R_14901249_SNP [dm3] 2R_19013744_SNP [dm6]	T	C	1.602e^-7	0.001	INTERGENIC
2R	18928784	2R_18928784_SNP [dm3] 2R_23041261_SNP [dm6]	G	A	1.602e^-7	0.001	INTRON twi & 1 other
2R	16291256	2R_16291256_SNP [dm3] 2R_20403751_SNP [dm6]	T	A	1.619e^-7	0.001	INTERGENIC
3R	12115137	3R_12115137_SNP [dm3] 3R_16289415_SNP [dm6]	C	T	1.639e^-7	0.001	INTRON gish	TF binding site mE1_TFBS_inv
3R	19488020	3R_19488020_SNP [dm3] 3R_23662298_SNP [dm6]	C	A	1.651e^-7	0.001	INTRON CG31145	TF binding site mE1_TFBS_HSA
3L	8912569	3L_8912569_DEL [dm3] 3L_8919469_DEL [dm6]	AGAACCAACTGAAGTCGGTC...	A	1.690e^-7	0.001	INTRON Tsp66E
2R	9978778	2R_9978778_SNP [dm3] 2R_14091273_SNP [dm6]	T	C	1.710e^-7	0.001	SYNONYMOUS_CODING CG42288 DOWNSTREAM CG42287 INTRON Prosap
3R	19149955	3R_19149955_SNP [dm3] 3R_23324233_SNP [dm6]	C	T	1.787e^-7	0.001	INTRON pnt
2R	5991596	2R_5991596_SNP [dm3] 2R_10104091_SNP [dm6]	A	G	1.791e^-7	0.001	UPSTREAM 14-3-3zeta INTRON 14-3-3zeta	TF binding site BDTNP1_TFBS_dl
3R	10030630	3R_10030630_SNP [dm3] 3R_14204908_SNP [dm6]	T	G	1.813e^-7	0.001	INTRON Dop1R1
X	11058286	X_11058286_SNP [dm3] X_11164253_SNP [dm6]	A	G	1.826e^-7	0.001	UTR_3_PRIME Dlic
2R	5986958	2R_5986958_SNP [dm3] 2R_10099453_SNP [dm6]	T	G	1.838e^-7	0.001	UPSTREAM 14-3-3zeta DOWNSTREAM Jra INTRON RpLP0-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	5989026	2R_5989026_SNP [dm3] 2R_10101521_SNP [dm6]	T	A	1.838e^-7	0.001	INTRON 14-3-3zeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	5994349	2R_5994349_SNP [dm3] 2R_10106844_SNP [dm6]	T	C	1.838e^-7	0.001	INTRON 14-3-3zeta
3R	20715967	3R_20715967_SNP [dm3] 3R_24890245_SNP [dm6]	T	C	1.841e^-7	0.001	INTRON CG31121
2R	1606043	2R_1606043_SNP [dm3] 2R_5718538_SNP [dm6]	A	C	1.847e^-7	0.001	INTRON ap
2R	8132421	2R_8132421_DEL [dm3] 2R_12244916_DEL [dm6]	GA	C	1.860e^-7	0.001	UPSTREAM CG43244 INTERGENIC
3L	10878990	3L_10878990_SNP [dm3] 3L_10885890_SNP [dm6]	A	T	1.903e^-7	0.001	INTRON CG6404	TF binding site BDTNP1_TFBS_dl
3L	17196319	3L_17196319_SNP [dm3] 3L_17203219_SNP [dm6]	T	A	1.973e^-7	0.001	INTRON Rbp6
3R	18582453	3R_18582453_SNP [dm3] 3R_22756731_SNP [dm6]	C	T	1.978e^-7	0.001	INTRON Usp12-46 & 1 other
3R	4422562	3R_4422562_SNP [dm3] 3R_8596840_SNP [dm6]	G	T	1.978e^-7	0.001	INTRON 5-HT2B
2R	15302591	2R_15302591_SNP [dm3] 2R_19415086_SNP [dm6]	G	C	1.999e^-7	0.001	UPSTREAM tRNA:CR30326 & 1 other DOWNSTREAM tRNA:S4:56D & 1 other INTRON hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21518241	3R_21518241_SNP [dm3] 3R_25692519_SNP [dm6]	G	A	2.001e^-7	0.001	INTERGENIC
2R	14433156	2R_14433156_SNP [dm3] 2R_18545651_SNP [dm6]	C	A	2.002e^-7	0.001	SYNONYMOUS_CODING Rgk2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	6215860	2R_6215860_SNP [dm3] 2R_10328355_SNP [dm6]	C	A	2.009e^-7	0.001	INTRON CG42732
2R	14148970	2R_14148970_SNP [dm3] 2R_18261465_SNP [dm6]	T	A	2.017e^-7	0.001	INTERGENIC
2R	8119682	2R_8119682_SNP [dm3] 2R_12232177_SNP [dm6]	T	C	2.017e^-7	0.001	INTERGENIC
3R	3253590	3R_3253590_SNP [dm3] 3R_7427868_SNP [dm6]	C	T	2.023e^-7	0.001	INTERGENIC
3R	10032336	3R_10032336_SNP [dm3] 3R_14206614_SNP [dm6]	T	A	2.108e^-7	0.001	INTRON Dop1R1
3R	23312694	3R_23312694_SNP [dm3] 3R_27486972_SNP [dm6]	T	C	2.167e^-7	0.001	UPSTREAM Gr98a INTERGENIC
3R	10171530	3R_10171530_SNP [dm3] 3R_14345808_SNP [dm6]	C	T	2.196e^-7	0.001	INTRON NK7.1
2R	1393526	2R_1393526_SNP [dm3] 2R_5506021_SNP [dm6]	C	T	2.216e^-7	0.001	INTRON CG30438 & 1 other
2R	1393527	2R_1393527_SNP [dm3] 2R_5506022_SNP [dm6]	C	T	2.216e^-7	0.001	INTRON CG30438 & 1 other
2R	14133455	2R_14133455_DEL [dm3] 2R_18245950_DEL [dm6]	AGG	A	2.229e^-7	0.001	DOWNSTREAM CR44420 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	1627517	2R_1627517_SNP [dm3] 2R_5740012_SNP [dm6]	T	A	2.249e^-7	0.001	INTERGENIC	regulatory region REDfly_CRMs
2R	7955921	2R_7955921_SNP [dm3] 2R_12068416_SNP [dm6]	A	T	2.252e^-7	0.001	INTRON CG8888
3L	8224551	3L_8224551_SNP [dm3] 3L_8231451_SNP [dm6]	G	C	2.276e^-7	0.001	DOWNSTREAM eIF4E-3 & 1 other EXON CR43953
2R	9915605	2R_9915605_SNP [dm3] 2R_14028100_SNP [dm6]	G	T	2.281e^-7	0.001	UPSTREAM CG18371 INTRON mam
2L	10975522	2L_10975522_SNP [dm3] 2L_10975522_SNP [dm6]	A	T	2.305e^-7	0.001	UTR_3_PRIME l_2_06225 UPSTREAM abo DOWNSTREAM l_2_06225	TF binding site BDTNP1_TFBS_dl
3R	15961818	3R_15961818_SNP [dm3] 3R_20136096_SNP [dm6]	A	C	2.321e^-7	0.001	INTERGENIC
X	11822709	X_11822709_SNP [dm3] X_11928676_SNP [dm6]	G	T	2.338e^-7	0.001	SYNONYMOUS_CODING CG10362
X	11822895	X_11822895_SNP [dm3] X_11928862_SNP [dm6]	A	G	2.338e^-7	0.001	SYNONYMOUS_CODING CG10362
3L	18342747	3L_18342747_INS [dm3] 3L_18349647_INS [dm6]	T	TC	2.356e^-7	0.001	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18202714	3L_18202714_SNP [dm3] 3L_18209614_SNP [dm6]	T	G	2.373e^-7	0.001	INTERGENIC
3L	12885858	3L_12885858_SNP [dm3] 3L_12892758_SNP [dm6]	C	G	2.379e^-7	0.001	NON_SYNONYMOUS_CODING CG14118 DOWNSTREAM CG43894	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	12604370	3R_12604370_SNP [dm3] 3R_16778648_SNP [dm6]	G	A	2.380e^-7	0.001	INTERGENIC
X	12304729	X_12304729_SNP [dm3] X_12410696_SNP [dm6]	T	G	2.420e^-7	0.001	DOWNSTREAM CG2574 & 1 other INTERGENIC
3R	21368883	3R_21368883_SNP [dm3] 3R_25543161_SNP [dm6]	G	A	2.436e^-7	0.001	INTRON msi
3R	4422577	3R_4422577_SNP [dm3] 3R_8596855_SNP [dm6]	A	G	2.483e^-7	0.001	INTRON 5-HT2B
3R	10032493	3R_10032493_SNP [dm3] 3R_14206771_SNP [dm6]	T	C	2.504e^-7	0.001	INTRON Dop1R1
3R	15992223	3R_15992223_SNP [dm3] 3R_20166501_SNP [dm6]	A	G	2.505e^-7	0.001	INTERGENIC
2R	12710721	2R_12710721_SNP [dm3] 2R_16823216_SNP [dm6]	C	A	2.525e^-7	0.001	INTERGENIC
3R	12999031	3R_12999031_SNP [dm3] 3R_17173309_SNP [dm6]	T	A	2.527e^-7	0.001	INTRON Mur89F
X	12943083	X_12943083_DEL [dm3] X_13049050_DEL [dm6]	AAACACAGCGAGCG...	A	2.527e^-7	0.001	INTRON rad
X	12943101	X_12943101_SNP [dm3] X_13049068_SNP [dm6]	A	T	2.527e^-7	0.001	INTRON rad
X	12943102	X_12943102_DEL [dm3] X_13049069_DEL [dm6]	CGGAA	C	2.527e^-7	0.001	INTRON rad
X	12943107	X_12943107_DEL [dm3] X_13049074_DEL [dm6]	CAT	C	2.527e^-7	0.001	INTRON rad
X	9624809	X_9624809_SNP [dm3] X_9730776_SNP [dm6]	G	T	2.532e^-7	0.001	INTRON Sp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
3R	16912816	3R_16912816_SNP [dm3] 3R_21087094_SNP [dm6]	G	A	2.552e^-7	0.002	SYNONYMOUS_CODING RhoGAP93B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10032348	3R_10032348_SNP [dm3] 3R_14206626_SNP [dm6]	T	G	2.593e^-7	0.002	INTRON Dop1R1
2R	7686229	2R_7686229_DEL [dm3] 2R_11798724_DEL [dm6]	ATGGTAA	A	2.597e^-7	0.002	INTRON ths
3R	2744904	3R_2744904_SNP [dm3] 3R_6919182_SNP [dm6]	G	A	2.599e^-7	0.002	INTRON Antp	TF binding site BDTNP1_TFBS_twi
3R	10032355	3R_10032355_SNP [dm3] 3R_14206633_SNP [dm6]	G	C	2.616e^-7	0.002	INTRON Dop1R1
3R	10033604	3R_10033604_SNP [dm3] 3R_14207882_SNP [dm6]	C	T	2.660e^-7	0.002	INTRON Dop1R1
3R	22315298	3R_22315298_SNP [dm3] 3R_26489576_SNP [dm6]	C	A	2.711e^-7	0.002	INTRON plum
3R	10032335	3R_10032335_SNP [dm3] 3R_14206613_SNP [dm6]	T	G	2.736e^-7	0.002	INTRON Dop1R1
3R	12379616	3R_12379616_SNP [dm3] 3R_16553894_SNP [dm6]	A	G	2.777e^-7	0.002	INTRON CG42342
2R	1799468	2R_1799468_INS [dm3] 2R_5911963_INS [dm6]	C	CAC	2.779e^-7	0.002	INTRON CG43366	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10175282	3R_10175282_SNP [dm3] 3R_14349560_SNP [dm6]	C	A	2.784e^-7	0.002	INTRON NK7.1	TF binding site mE1_TFBS_inv
2R	1377882	2R_1377882_SNP [dm3] 2R_5490377_SNP [dm6]	G	A	2.797e^-7	0.002	INTRON CG30440	transposable element FlyBase
2R	7934013	2R_7934013_SNP [dm3] 2R_12046508_SNP [dm6]	A	G	2.859e^-7	0.002	INTRON Drep-1
3R	10032499	3R_10032499_SNP [dm3] 3R_14206777_SNP [dm6]	A	T	2.929e^-7	0.002	INTRON Dop1R1
3L	19031567	3L_19031567_SNP [dm3] 3L_19038467_SNP [dm6]	C	T	2.937e^-7	0.002	INTRON nkd	TF binding site mE1_TFBS_cad
3R	2716020	3R_2716020_SNP [dm3] 3R_6890298_SNP [dm6]	T	A	2.947e^-7	0.002	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	25322527	3R_25322527_SNP [dm3] 3R_29496805_SNP [dm6]	C	T	2.983e^-7	0.002	INTRON CG2010	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	7555667	2L_7555667_SNP [dm3] 2L_7555667_SNP [dm6]	G	A	3.043e^-7	0.002	INTRON RapGAP1
3L	6317165	3L_6317165_SNP [dm3] 3L_6324065_SNP [dm6]	G	T	3.057e^-7	0.002	INTERGENIC
2L	18254594	2L_18254594_SNP [dm3] 2L_18254594_SNP [dm6]	C	G	3.076e^-7	0.002	INTRON CG42750
X	3141133	X_3141133_SNP [dm3] X_3247100_SNP [dm6]	C	G	3.077e^-7	0.002	INTRON dnc
3R	10166263	3R_10166263_SNP [dm3] 3R_14340541_SNP [dm6]	T	A	3.091e^-7	0.002	INTRON NK7.1
3R	15023922	3R_15023922_SNP [dm3] 3R_19198200_SNP [dm6]	T	C	3.129e^-7	0.002	INTRON CG31475
2R	5983968	2R_5983968_SNP [dm3] 2R_10096463_SNP [dm6]	A	C	3.134e^-7	0.002	UPSTREAM Jra DOWNSTREAM CG2269 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
3R	15826518	3R_15826518_SNP [dm3] 3R_20000796_SNP [dm6]	A	C	3.163e^-7	0.002	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
X	12943110	X_12943110_SNP [dm3] X_13049077_SNP [dm6]	T	C	3.176e^-7	0.002	INTRON rad
2L	15596462	2L_15596462_SNP [dm3] 2L_15596462_SNP [dm6]	C	A	3.180e^-7	0.002	INTERGENIC
3L	6450542	3L_6450542_SNP [dm3] 3L_6457442_SNP [dm6]	C	A	3.319e^-7	0.002	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16319245	X_16319245_DEL [dm3] X_16425212_DEL [dm6]	TT	T	3.319e^-7	0.002	INTRON hang	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16692268	2R_16692268_DEL [dm3] 2R_20804763_DEL [dm6]	GTG	G	3.322e^-7	0.002	INTERGENIC
3R	23476677	3R_23476677_SNP [dm3] 3R_27650955_SNP [dm6]	T	C	3.360e^-7	0.002	UTR_3_PRIME tau UPSTREAM tau INTRON tau
3R	10032381	3R_10032381_SNP [dm3] 3R_14206659_SNP [dm6]	A	G	3.392e^-7	0.002	INTRON Dop1R1
2R	5797993	2R_5797993_SNP [dm3] 2R_9910488_SNP [dm6]	G	T	3.431e^-7	0.002	UPSTREAM Etf-QO DOWNSTREAM FMRFa INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	1667188	X_1667188_SNP [dm3] X_1773155_SNP [dm6]	A	G	3.448e^-7	0.002	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	8613879	2R_8613879_DEL [dm3] 2R_12726374_DEL [dm6]	GCCAAAGTGGCGCACATATC...	G	3.516e^-7	0.002	INTRON CG42663
2R	17330040	2R_17330040_SNP [dm3] 2R_21442535_SNP [dm6]	G	A	3.533e^-7	0.002	INTRON Sdc
2R	17330061	2R_17330061_SNP [dm3] 2R_21442556_SNP [dm6]	T	C	3.533e^-7	0.002	INTRON Sdc
3R	23988740	3R_23988740_SNP [dm3] 3R_28163018_SNP [dm6]	T	A	3.625e^-7	0.002	INTRON CG34354
2R	8119577	2R_8119577_SNP [dm3] 2R_12232072_SNP [dm6]	A	G	3.814e^-7	0.002	INTERGENIC
2R	18199737	2R_18199737_SNP [dm3] 2R_22312232_SNP [dm6]	C	T	3.877e^-7	0.002	UPSTREAM wdp & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	12998991	3R_12998991_SNP [dm3] 3R_17173269_SNP [dm6]	T	C	3.898e^-7	0.002	INTRON Mur89F
2L	4793640	2L_4793640_SNP [dm3] 2L_4793640_SNP [dm6]	G	T	3.916e^-7	0.002	NON_SYNONYMOUS_CODING CG15630 SPLICE_SITE_REGION CG15630 UPSTREAM CG3294
3R	21738103	3R_21738103_SNP [dm3] 3R_25912381_SNP [dm6]	A	C	3.924e^-7	0.002	NON_SYNONYMOUS_CODING CG42235 INTRON CG42235
2L	4298509	2L_4298509_SNP [dm3] 2L_4298509_SNP [dm6]	G	T	3.992e^-7	0.002	INTRON tutl
3R	15023920	3R_15023920_SNP [dm3] 3R_19198198_SNP [dm6]	T	G	4.058e^-7	0.002	INTRON CG31475
2L	15569274	2L_15569274_SNP [dm3] 2L_15569274_SNP [dm6]	C	T	4.074e^-7	0.002	INTRON kek3
2L	10166340	2L_10166340_SNP [dm3] 2L_10166340_SNP [dm6]	G	T	4.194e^-7	0.002	INTRON CG44153
2L	9379864	2L_9379864_SNP [dm3] 2L_9379864_SNP [dm6]	G	T	4.194e^-7	0.002	SYNONYMOUS_CODING Shawl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2261191	3L_2261191_SNP [dm3] 3L_2261191_SNP [dm6]	C	T	4.215e^-7	0.002	INTRON oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10032483	3R_10032483_SNP [dm3] 3R_14206761_SNP [dm6]	C	G	4.244e^-7	0.002	INTRON Dop1R1
X	1667184	X_1667184_SNP [dm3] X_1773151_SNP [dm6]	A	T	4.255e^-7	0.002	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	8473801	2L_8473801_SNP [dm3] 2L_8473801_SNP [dm6]	A	G	4.270e^-7	0.002	INTRON d
3R	23628022	3R_23628022_SNP [dm3] 3R_27802300_SNP [dm6]	G	A	4.327e^-7	0.002	INTRON CG34353
X	16316859	X_16316859_DEL [dm3] X_16422826_DEL [dm6]	TT	T	4.504e^-7	0.002	UPSTREAM hang & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	22764820	3R_22764820_SNP [dm3] 3R_26939098_SNP [dm6]	A	G	4.540e^-7	0.002	SYNONYMOUS_CODING sda
3R	10032428	3R_10032428_SNP [dm3] 3R_14206706_SNP [dm6]	C	T	4.550e^-7	0.002	INTRON Dop1R1
3R	10032526	3R_10032526_SNP [dm3] 3R_14206804_SNP [dm6]	A	G	4.665e^-7	0.002	INTRON Dop1R1
3L	1057653	3L_1057653_SNP [dm3] 3L_1057653_SNP [dm6]	G	C	4.802e^-7	0.002	INTRON bab1
X	10476518	X_10476518_SNP [dm3] X_10582485_SNP [dm6]	C	G	4.858e^-7	0.002	INTRON spri
3L	8331303	3L_8331303_SNP [dm3] 3L_8338203_SNP [dm6]	G	A	4.901e^-7	0.002	UTR_3_PRIME Cpr66Cb UPSTREAM Pex2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14128231	2R_14128231_SNP [dm3] 2R_18240726_SNP [dm6]	T	G	4.927e^-7	0.002	INTERGENIC
2L	11896616	2L_11896616_SNP [dm3] 2L_11896616_SNP [dm6]	T	G	4.959e^-7	0.002	UTR_5_PRIME Pde1c INTRON Pde1c
3R	21517852	3R_21517852_SNP [dm3] 3R_25692130_SNP [dm6]	A	G	5.016e^-7	0.002	INTERGENIC
2L	18984217	2L_18984217_SNP [dm3] 2L_18984217_SNP [dm6]	G	A	5.140e^-7	0.003	INTRON Swip-1
3R	12112848	3R_12112848_SNP [dm3] 3R_16287126_SNP [dm6]	A	G	5.188e^-7	0.003	INTRON gish
3R	12112849	3R_12112849_DEL [dm3] 3R_16287127_DEL [dm6]	TATAC	T	5.188e^-7	0.003	INTRON gish
3R	15907861	3R_15907861_SNP [dm3] 3R_20082139_SNP [dm6]	C	T	5.188e^-7	0.003	SYNONYMOUS_CODING Rh3	TF binding site mE1_TFBS_cad
2R	5983967	2R_5983967_SNP [dm3] 2R_10096462_SNP [dm6]	A	C	5.285e^-7	0.003	UPSTREAM Jra DOWNSTREAM CG2269 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
X	4479720	X_4479720_DEL [dm3] X_4585687_DEL [dm6]	AA	A	5.286e^-7	0.003	INTRON CR32773	TF binding site mE1_TFBS_HSA
2R	18908478	2R_18908478_DEL [dm3] 2R_23020955_DEL [dm6]	CA	C	5.293e^-7	0.003	INTRON twi & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24803947	3R_24803947_SNP [dm3] 3R_28978225_SNP [dm6]	A	G	5.444e^-7	0.003	INTERGENIC
3L	2261270	3L_2261270_SNP [dm3] 3L_2261270_SNP [dm6]	G	C	5.468e^-7	0.003	INTRON oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3832942	2L_3832942_SNP [dm3] 2L_3832942_SNP [dm6]	T	A	5.490e^-7	0.003	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	3832948	2L_3832948_SNP [dm3] 2L_3832948_SNP [dm6]	A	T	5.490e^-7	0.003	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
X	13370179	X_13370179_SNP [dm3] X_13476146_SNP [dm6]	T	G	5.566e^-7	0.003	INTRON Neto
2R	14901309	2R_14901309_SNP [dm3] 2R_19013804_SNP [dm6]	G	A	5.608e^-7	0.003	INTERGENIC
3R	21781961	3R_21781961_SNP [dm3] 3R_25956239_SNP [dm6]	T	C	5.677e^-7	0.003	UTR_5_PRIME CCAP-R
3R	23289960	3R_23289960_SNP [dm3] 3R_27464238_SNP [dm6]	A	G	5.694e^-7	0.003	UTR_5_PRIME CG13978	TF binding site mE1_TFBS_cad
2L	13037197	2L_13037197_SNP [dm3] 2L_13037197_SNP [dm6]	G	C	5.710e^-7	0.003	INTRON CG9932
2R	15363608	2R_15363608_SNP [dm3] 2R_19476103_SNP [dm6]	C	A	5.722e^-7	0.003	INTRON par-1
3L	17187432	3L_17187432_SNP [dm3] 3L_17194332_SNP [dm6]	G	A	5.732e^-7	0.003	INTRON Rbp6
2L	12534360	2L_12534360_INS [dm3] 2L_12534360_INS [dm6]	A	AGGAGTG	5.739e^-7	0.003	INTRON bun
2L	22029027	2L_22029027_SNP [dm3] 2L_22029027_SNP [dm6]	G	A	5.758e^-7	0.003	INTERGENIC
2R	17669978	2R_17669978_SNP [dm3] 2R_21782473_SNP [dm6]	C	T	5.825e^-7	0.003	INTERGENIC
3L	18281751	3L_18281751_SNP [dm3] 3L_18288651_SNP [dm6]	T	C	5.856e^-7	0.003	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	18701520	2R_18701520_SNP [dm3] 2R_22814015_SNP [dm6]	A	C	5.915e^-7	0.003	SYNONYMOUS_CODING stl	TF binding site mE1_TFBS_chinmo
3R	21772160	3R_21772160_SNP [dm3] 3R_25946438_SNP [dm6]	T	G	5.939e^-7	0.003	INTRON CCAP-R
3R	20937214	3R_20937214_SNP [dm3] 3R_25111492_SNP [dm6]	T	G	5.968e^-7	0.003	SYNONYMOUS_CODING CG13650	TF binding site mE1_TFBS_cad
3L	4633993	3L_4633993_SNP [dm3] 3L_4633993_SNP [dm6]	C	G	5.969e^-7	0.003	DOWNSTREAM CG13716 INTRON axo
X	857241	X_857241_SNP [dm3] X_963208_SNP [dm6]	T	A	6.024e^-7	0.003	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9443614	3L_9443614_SNP [dm3] 3L_9450514_SNP [dm6]	C	A	6.066e^-7	0.003	UTR_3_PRIME CG3529 DOWNSTREAM CG3448
2L	7487350	2L_7487350_DEL [dm3] 2L_7487350_DEL [dm6]	AGACACATTTGAATAAGCTA...	A	6.097e^-7	0.003	INTRON Ziz
3L	21076091	3L_21076091_SNP [dm3] 3L_21082991_SNP [dm6]	T	C	6.103e^-7	0.003	INTRON ko
3L	5958905	3L_5958905_SNP [dm3] 3L_5965805_SNP [dm6]	G	T	6.205e^-7	0.003	INTERGENIC
2R	17306163	2R_17306163_SNP [dm3] 2R_21418658_SNP [dm6]	C	G	6.207e^-7	0.003	INTRON Sdc
2R	13697199	2R_13697199_DEL [dm3] 2R_17809694_DEL [dm6]	GGTAGCTGTGG...	G	6.225e^-7	0.003	INTRON grh	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
2R	13277532	2R_13277532_SNP [dm3] 2R_17390027_SNP [dm6]	A	G	6.265e^-7	0.003	UPSTREAM CR44344 INTERGENIC
2L	11896944	2L_11896944_SNP [dm3] 2L_11896944_SNP [dm6]	T	G	6.298e^-7	0.003	UPSTREAM Pde1c INTRON Pde1c
X	2179675	X_2179675_INS [dm3] X_2285642_INS [dm6]	A	AG	6.347e^-7	0.003	INTRON CG2865	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13568462	2R_13568462_SNP [dm3] 2R_17680957_SNP [dm6]	A	G	6.376e^-7	0.003	INTRON Sema-1b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13568471	2R_13568471_INS [dm3] 2R_17680966_INS [dm6]	T	TATAT	6.376e^-7	0.003	INTRON Sema-1b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13568877	2R_13568877_SNP [dm3] 2R_17681372_SNP [dm6]	C	A	6.383e^-7	0.003	INTRON Sema-1b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13568487	2R_13568487_SNP [dm3] 2R_17680982_SNP [dm6]	T	C	6.404e^-7	0.003	INTRON Sema-1b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2536509	3L_2536509_SNP [dm3] 3L_2536509_SNP [dm6]	G	T	6.423e^-7	0.003	INTRON Spn
3L	2536612	3L_2536612_SNP [dm3] 3L_2536612_SNP [dm6]	A	G	6.423e^-7	0.003	UPSTREAM Spn INTRON Spn
2L	10110210	2L_10110210_SNP [dm3] 2L_10110210_SNP [dm6]	T	G	6.568e^-7	0.003	INTRON CG44153 & 1 other
3L	8328995	3L_8328995_SNP [dm3] 3L_8335895_SNP [dm6]	G	T	6.681e^-7	0.003	UPSTREAM Cpr66Cb INTERGENIC
3R	26294568	3R_26294568_SNP [dm3] 3R_30468846_SNP [dm6]	A	G	6.721e^-7	0.003	INTRON PH4alphaEFB
2L	11896670	2L_11896670_SNP [dm3] 2L_11896670_SNP [dm6]	G	T	6.729e^-7	0.003	UTR_5_PRIME Pde1c INTRON Pde1c
3R	15907933	3R_15907933_SNP [dm3] 3R_20082211_SNP [dm6]	C	T	6.731e^-7	0.003	SYNONYMOUS_CODING Rh3	TF binding site mE1_TFBS_cad
X	7738378	X_7738378_SNP [dm3] X_7844345_SNP [dm6]	G	T	6.818e^-7	0.003	INTERGENIC
X	1667322	X_1667322_SNP [dm3] X_1773289_SNP [dm6]	C	G	6.868e^-7	0.003	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	15913538	2R_15913538_SNP [dm3] 2R_20026033_SNP [dm6]	T	G	6.926e^-7	0.003	INTERGENIC
X	3208372	X_3208372_SNP [dm3] X_3314339_SNP [dm6]	C	T	6.969e^-7	0.003	SYNONYMOUS_CODING dnc DOWNSTREAM CG10793 INTRON dnc & 1 other	TF binding site BDTNP1_TFBS_sna
2L	5933324	2L_5933324_SNP [dm3] 2L_5933324_SNP [dm6]	T	G	7.002e^-7	0.003	INTRON dsf	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	9877316	3R_9877316_SNP [dm3] 3R_14051594_SNP [dm6]	C	A	7.079e^-7	0.003	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2302693	X_2302693_SNP [dm3] X_2408660_SNP [dm6]	T	C	7.090e^-7	0.003	DOWNSTREAM CG12496 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	17187536	3L_17187536_SNP [dm3] 3L_17194436_SNP [dm6]	C	T	7.108e^-7	0.003	INTRON Rbp6
2L	12154644	2L_12154644_SNP [dm3] 2L_12154644_SNP [dm6]	T	C	7.137e^-7	0.003	INTRON CG31760
3R	22297516	3R_22297516_SNP [dm3] 3R_26471794_SNP [dm6]	T	A	7.203e^-7	0.003	UTR_3_PRIME plum
3R	24803934	3R_24803934_SNP [dm3] 3R_28978212_SNP [dm6]	A	C	7.313e^-7	0.003	INTERGENIC
3R	22117192	3R_22117192_SNP [dm3] 3R_26291470_SNP [dm6]	A	C	7.323e^-7	0.003	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6656952	3L_6656952_SNP [dm3] 3L_6663852_SNP [dm6]	C	T	7.479e^-7	0.003	DOWNSTREAM eIF4E-4 INTERGENIC
2L	1703371	2L_1703371_SNP [dm3] 2L_1703371_SNP [dm6]	C	A	7.530e^-7	0.003	UTR_3_PRIME chinmo
X	2502652	X_2502652_SNP [dm3] X_2608619_SNP [dm6]	T	A	7.554e^-7	0.003	NON_SYNONYMOUS_CODING Bzd DOWNSTREAM CG8636	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	8425337	2R_8425337_SNP [dm3] 2R_12537832_SNP [dm6]	T	C	7.556e^-7	0.003	INTRON fra
X	7897467	X_7897467_SNP [dm3] X_8003434_SNP [dm6]	A	T	7.645e^-7	0.003	INTRON Tbh
2R	14131525	2R_14131525_SNP [dm3] 2R_18244020_SNP [dm6]	T	A	7.730e^-7	0.003	INTERGENIC
2R	14131532	2R_14131532_SNP [dm3] 2R_18244027_SNP [dm6]	T	A	7.730e^-7	0.003	INTERGENIC
2L	12214318	2L_12214318_SNP [dm3] 2L_12214318_SNP [dm6]	T	A	7.923e^-7	0.003	INTRON aret
3R	11603868	3R_11603868_SNP [dm3] 3R_15778146_SNP [dm6]	A	T	7.948e^-7	0.003	DOWNSTREAM CG4525 INTERGENIC
3L	3503821	3L_3503821_SNP [dm3] 3L_3503821_SNP [dm6]	T	C	7.985e^-7	0.003	INTRON CG42324
3L	20891041	3L_20891041_SNP [dm3] 3L_20897941_SNP [dm6]	G	A	8.072e^-7	0.003	NON_SYNONYMOUS_CODING CG43931 UPSTREAM Sfp77F
3R	7751812	3R_7751812_SNP [dm3] 3R_11926090_SNP [dm6]	G	T	8.072e^-7	0.003	INTRON Cad87A
2R	724441	2R_724441_SNP [dm3] 2R_4836936_SNP [dm6]	C	T	8.086e^-7	0.003	INTERGENIC	transposable element FlyBase
2R	14963690	2R_14963690_SNP [dm3] 2R_19076185_SNP [dm6]	G	A	8.135e^-7	0.003	INTRON 5-HT1A
2R	5073718	2R_5073718_SNP [dm3] 2R_9186213_SNP [dm6]	G	T	8.235e^-7	0.003	UTR_5_PRIME ltd DOWNSTREAM CG8026 & 1 other	regulatory region REDfly_CRMs
3L	17780815	3L_17780815_SNP [dm3] 3L_17787715_SNP [dm6]	A	G	8.240e^-7	0.003	INTERGENIC
3R	22774433	3R_22774433_SNP [dm3] 3R_26948711_SNP [dm6]	G	T	8.386e^-7	0.003	DOWNSTREAM CG6330 INTRON CG18472
3L	2431017	3L_2431017_SNP [dm3] 3L_2431017_SNP [dm6]	T	G	8.389e^-7	0.003	INTRON CG45186
2R	8622821	2R_8622821_SNP [dm3] 2R_12735316_SNP [dm6]	T	A	8.527e^-7	0.003	INTRON CG42663
2L	4119162	2L_4119162_SNP [dm3] 2L_4119162_SNP [dm6]	A	C	8.547e^-7	0.003	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3380537	X_3380537_SNP [dm3] X_3486504_SNP [dm6]	A	G	8.939e^-7	0.004	NON_SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
3L	12865432	3L_12865432_SNP [dm3] 3L_12872332_SNP [dm6]	C	A	9.000e^-7	0.004	INTERGENIC
3R	16196889	3R_16196889_DEL [dm3] 3R_20371167_DEL [dm6]	ATAA	A	9.034e^-7	0.004	INTERGENIC
3L	4116589	3L_4116589_SNP [dm3] 3L_4116589_SNP [dm6]	A	G	9.073e^-7	0.004	UPSTREAM Chd64 INTRON Chd64
2R	6220444	2R_6220444_SNP [dm3] 2R_10332939_SNP [dm6]	T	A	9.172e^-7	0.004	INTRON CG42732
2R	6220476	2R_6220476_SNP [dm3] 2R_10332971_SNP [dm6]	A	G	9.172e^-7	0.004	INTRON CG42732
3L	9563915	3L_9563915_SNP [dm3] 3L_9570815_SNP [dm6]	G	T	9.296e^-7	0.004	INTRON CG42673
3R	9877476	3R_9877476_SNP [dm3] 3R_14051754_SNP [dm6]	A	G	9.303e^-7	0.004	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15935158	3L_15935158_SNP [dm3] 3L_15942058_SNP [dm6]	C	T	9.324e^-7	0.004	INTRON Pka-C3
3R	15961850	3R_15961850_SNP [dm3] 3R_20136128_SNP [dm6]	A	T	9.387e^-7	0.004	INTERGENIC
2L	12259962	2L_12259962_SNP [dm3] 2L_12259962_SNP [dm6]	G	A	9.465e^-7	0.004	INTRON aret
2R	18898490	2R_18898490_SNP [dm3] 2R_23010967_SNP [dm6]	C	T	9.547e^-7	0.004	DOWNSTREAM CG42741 INTRON twi
2R	6221865	2R_6221865_SNP [dm3] 2R_10334360_SNP [dm6]	G	T	9.605e^-7	0.004	INTRON CG42732
2R	19327821	2R_19327821_SNP [dm3] 2R_23440298_SNP [dm6]	A	G	9.660e^-7	0.004	INTRON Or59a
3R	15992615	3R_15992615_SNP [dm3] 3R_20166893_SNP [dm6]	C	A	9.748e^-7	0.004	INTERGENIC
3L	5472070	3L_5472070_SNP [dm3] 3L_5478970_SNP [dm6]	C	A	9.799e^-7	0.004	UPSTREAM CG4835 INTERGENIC
3L	20359275	3L_20359275_SNP [dm3] 3L_20366175_SNP [dm6]	C	A	9.832e^-7	0.004	UTR_5_PRIME Toll-9 UPSTREAM Toll-9	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	16145252	3R_16145252_SNP [dm3] 3R_20319530_SNP [dm6]	T	C	9.905e^-7	0.004	INTRON CG42668
X	9722295	X_9722295_SNP [dm3] X_9828262_SNP [dm6]	C	G	9.906e^-7	0.004	INTRON CG32698
3R	25907637	3R_25907637_SNP [dm3] 3R_30081915_SNP [dm6]	A	C	9.957e^-7	0.004	INTRON sima
X	16609203	X_16609203_SNP [dm3] X_16715170_SNP [dm6]	C	T	1.003e^-6	0.004	SYNONYMOUS_CODING CG34325 DOWNSTREAM CG13008
2L	14889326	2L_14889326_SNP [dm3] 2L_14889326_SNP [dm6]	A	G	1.013e^-6	0.004	INTERGENIC
2R	8893723	2R_8893723_SNP [dm3] 2R_13006218_SNP [dm6]	G	A	1.039e^-6	0.004	UTR_3_PRIME Su_z_2	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	335310	X_335310_SNP [dm3] X_441277_SNP [dm6]	A	G	1.039e^-6	0.004	INTRON CG32816	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	337225	X_337225_SNP [dm3] X_443192_SNP [dm6]	C	A	1.039e^-6	0.004	INTRON CG32816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2R	17776115	2R_17776115_SNP [dm3] 2R_21888610_SNP [dm6]	A	G	1.051e^-6	0.004	INTRON Fili
2R	17776134	2R_17776134_SNP [dm3] 2R_21888629_SNP [dm6]	G	T	1.051e^-6	0.004	INTRON Fili
3R	10048954	3R_10048954_SNP [dm3] 3R_14223232_SNP [dm6]	G	T	1.054e^-6	0.004	NON_SYNONYMOUS_CODING Sp212
2R	12318738	2R_12318738_SNP [dm3] 2R_16431233_SNP [dm6]	A	G	1.073e^-6	0.004	UTR_3_PRIME Sema-2b DOWNSTREAM Sema-2b	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	12113070	3R_12113070_SNP [dm3] 3R_16287348_SNP [dm6]	C	G	1.076e^-6	0.004	INTRON gish
3L	13018896	3L_13018896_SNP [dm3] 3L_13025796_SNP [dm6]	C	A	1.076e^-6	0.004	SYNONYMOUS_CODING Zmynd10	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14128129	2R_14128129_SNP [dm3] 2R_18240624_SNP [dm6]	T	G	1.078e^-6	0.004	INTERGENIC
2R	17028143	2R_17028143_SNP [dm3] 2R_21140638_SNP [dm6]	A	G	1.093e^-6	0.004	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	17028148	2R_17028148_SNP [dm3] 2R_21140643_SNP [dm6]	C	A	1.093e^-6	0.004	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
X	16317137	X_16317137_SNP [dm3] X_16423104_SNP [dm6]	A	C	1.123e^-6	0.004	UTR_5_PRIME hang UPSTREAM AnxB11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	9118200	X_9118200_INS [dm3] X_9224167_INS [dm6]	A	AGCAGGCAAA	1.129e^-6	0.004	UPSTREAM t INTERGENIC
3L	21266801	3L_21266801_SNP [dm3] 3L_21273701_SNP [dm6]	T	G	1.172e^-6	0.004	INTRON AcCoAS
3L	18197487	3L_18197487_SNP [dm3] 3L_18204387_SNP [dm6]	G	A	1.195e^-6	0.004	DOWNSTREAM CG7320 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9842758	2L_9842758_SNP [dm3] 2L_9842758_SNP [dm6]	T	G	1.206e^-6	0.005	INTRON nAChRalpha6
X	13676193	X_13676193_SNP [dm3] X_13782160_SNP [dm6]	C	A	1.208e^-6	0.005	UTR_5_PRIME CtsB1 UPSTREAM CG11103	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	12115110	3R_12115110_SNP [dm3] 3R_16289388_SNP [dm6]	C	A	1.215e^-6	0.005	INTRON gish	TF binding site mE1_TFBS_inv
2R	15096006	2R_15096006_SNP [dm3] 2R_19208501_SNP [dm6]	C	T	1.217e^-6	0.005	INTRON hppy
3R	23910116	3R_23910116_SNP [dm3] 3R_28084394_SNP [dm6]	G	T	1.222e^-6	0.005	INTRON CG34362
3R	5995635	3R_5995635_SNP [dm3] 3R_10169913_SNP [dm6]	A	G	1.237e^-6	0.005	INTRON Best1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	1679793	X_1679793_SNP [dm3] X_1785760_SNP [dm6]	A	C	1.239e^-6	0.005	UTR_3_PRIME Adar INTRON CG42666
2L	12241688	2L_12241688_SNP [dm3] 2L_12241688_SNP [dm6]	A	G	1.265e^-6	0.005	SYNONYMOUS_CODING aret INTRON aret	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4793618	2L_4793618_SNP [dm3] 2L_4793618_SNP [dm6]	C	A	1.274e^-6	0.005	UPSTREAM CG3294 INTRON CG15630
2L	15574184	2L_15574184_SNP [dm3] 2L_15574184_SNP [dm6]	A	T	1.276e^-6	0.005	INTRON kek3
2R	17588477	2R_17588477_SNP [dm3] 2R_21700972_SNP [dm6]	G	A	1.284e^-6	0.005	UPSTREAM HmgD INTRON HmgZ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19226762	2R_19226762_SNP [dm3] 2R_23339239_SNP [dm6]	G	A	1.285e^-6	0.005	INTERGENIC
3R	18063138	3R_18063138_SNP [dm3] 3R_22237416_SNP [dm6]	C	T	1.286e^-6	0.005	INTRON SKIP
3R	18063190	3R_18063190_SNP [dm3] 3R_22237468_SNP [dm6]	C	T	1.286e^-6	0.005	INTRON SKIP
2R	17027902	2R_17027902_SNP [dm3] 2R_21140397_SNP [dm6]	G	A	1.294e^-6	0.005	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	5917494	X_5917494_SNP [dm3] X_6023461_SNP [dm6]	A	C	1.337e^-6	0.005	INTERGENIC
X	336392	X_336392_SNP [dm3] X_442359_SNP [dm6]	C	T	1.340e^-6	0.005	INTRON CG32816	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12318733	2R_12318733_INS [dm3] 2R_16431228_INS [dm6]	T	TT	1.350e^-6	0.005	UTR_3_PRIME Sema-2b DOWNSTREAM Sema-2b	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15282856	2R_15282856_SNP [dm3] 2R_19395351_SNP [dm6]	C	A	1.375e^-6	0.005	DOWNSTREAM cer INTRON SdhA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
3R	23561500	3R_23561500_SNP [dm3] 3R_27735778_SNP [dm6]	T	C	1.391e^-6	0.005	UPSTREAM Ets98B INTERGENIC
2R	12861868	2R_12861868_SNP [dm3] 2R_16974363_SNP [dm6]	T	A	1.391e^-6	0.005	INTRON Cbp53E
3R	15293092	3R_15293092_SNP [dm3] 3R_19467370_SNP [dm6]	A	G	1.403e^-6	0.005	INTRON Dys
3R	15293113	3R_15293113_SNP [dm3] 3R_19467391_SNP [dm6]	A	T	1.403e^-6	0.005	INTRON Dys
3R	15293406	3R_15293406_DEL [dm3] 3R_19467684_DEL [dm6]	CGAC	C	1.403e^-6	0.005	INTRON Dys
2L	12994852	2L_12994852_SNP [dm3] 2L_12994852_SNP [dm6]	A	T	1.416e^-6	0.005	INTRON CG12404
2L	12994854	2L_12994854_SNP [dm3] 2L_12994854_SNP [dm6]	G	C	1.416e^-6	0.005	INTRON CG12404
3R	6007246	3R_6007246_SNP [dm3] 3R_10181524_SNP [dm6]	T	A	1.426e^-6	0.005	INTRON CG12814
X	1675130	X_1675130_SNP [dm3] X_1781097_SNP [dm6]	G	C	1.429e^-6	0.005	UTR_3_PRIME Adar INTRON CG42666 & 1 other
2R	13042890	2R_13042890_SNP [dm3] 2R_17155385_SNP [dm6]	C	T	1.429e^-6	0.005	UTR_3_PRIME CG17290 DOWNSTREAM CG17290
2R	13022701	2R_13022701_SNP [dm3] 2R_17135196_SNP [dm6]	G	C	1.440e^-6	0.005	UTR_3_PRIME CG11400 UPSTREAM CR44391 DOWNSTREAM CG11400	transposable element FlyBase
3R	2445321	3R_2445321_SNP [dm3] 3R_6619599_SNP [dm6]	G	T	1.454e^-6	0.005	INTERGENIC
3R	20405158	3R_20405158_SNP [dm3] 3R_24579436_SNP [dm6]	G	T	1.460e^-6	0.005	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20405160	3R_20405160_SNP [dm3] 3R_24579438_SNP [dm6]	G	A	1.460e^-6	0.005	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20405162	3R_20405162_SNP [dm3] 3R_24579440_SNP [dm6]	G	T	1.460e^-6	0.005	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5017279	2R_5017279_SNP [dm3] 2R_9129774_SNP [dm6]	G	A	1.471e^-6	0.005	INTRON CG18659
3R	26523042	3R_26523042_SNP [dm3] 3R_30697320_SNP [dm6]	A	T	1.472e^-6	0.005	UPSTREAM Pka-C2 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2L	16188853	2L_16188853_SNP [dm3] 2L_16188853_SNP [dm6]	G	T	1.492e^-6	0.005	INTRON Ca-alpha1D
3R	16720638	3R_16720638_INS [dm3] 3R_20894916_INS [dm6]	T	TCT	1.514e^-6	0.005	UTR_3_PRIME CG10830
2R	14133330	2R_14133330_SNP [dm3] 2R_18245825_SNP [dm6]	G	T	1.549e^-6	0.005	DOWNSTREAM CR44420 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
2R	14133342	2R_14133342_SNP [dm3] 2R_18245837_SNP [dm6]	T	A	1.549e^-6	0.005	DOWNSTREAM CR44420 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
X	13612667	X_13612667_SNP [dm3] X_13718634_SNP [dm6]	C	A	1.561e^-6	0.005	UPSTREAM CG9940 DOWNSTREAM CG9941 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24579863	3R_24579863_SNP [dm3] 3R_28754141_SNP [dm6]	T	C	1.572e^-6	0.005	INTERGENIC	TF binding site mE1_TFBS_inv
3R	25428009	3R_25428009_SNP [dm3] 3R_29602287_SNP [dm6]	A	G	1.573e^-6	0.005	INTRON alph
X	12873752	X_12873752_SNP [dm3] X_12979719_SNP [dm6]	C	A	1.604e^-6	0.006	INTERGENIC
3L	4670421	3L_4670421_SNP [dm3] 3L_4670421_SNP [dm6]	G	A	1.609e^-6	0.006	INTRON axo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2763345	3R_2763345_SNP [dm3] 3R_6937623_SNP [dm6]	T	A	1.621e^-6	0.006	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	2763380	3R_2763380_INS [dm3] 3R_6937658_INS [dm6]	G	GA	1.621e^-6	0.006	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10399055	2L_10399055_SNP [dm3] 2L_10399055_SNP [dm6]	G	A	1.628e^-6	0.006	INTRON Cnot4	TF binding site mE1_TFBS_HSA
3R	20394631	3R_20394631_SNP [dm3] 3R_24568909_SNP [dm6]	G	A	1.684e^-6	0.006	INTRON CG13624	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	1202999	2R_1202999_DEL [dm3] 2R_5315494_DEL [dm6]	AAGAAAGGACAAGCAGGAAA...	A	1.694e^-6	0.006	INTRON sxc	transposable element FlyBase
X	5979233	X_5979233_SNP [dm3] X_6085200_SNP [dm6]	G	A	1.699e^-6	0.006	SYNONYMOUS_CODING raptor INTRON Mipp2	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15293096	3R_15293096_SNP [dm3] 3R_19467374_SNP [dm6]	A	G	1.714e^-6	0.006	INTRON Dys
2L	14356203	2L_14356203_SNP [dm3] 2L_14356203_SNP [dm6]	A	G	1.724e^-6	0.006	UPSTREAM Rab14 INTRON Rab14 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	15567418	2L_15567418_SNP [dm3] 2L_15567418_SNP [dm6]	A	G	1.726e^-6	0.006	INTRON kek3
2R	13022717	2R_13022717_SNP [dm3] 2R_17135212_SNP [dm6]	G	C	1.760e^-6	0.006	UTR_3_PRIME CG11400 UPSTREAM CR44391 DOWNSTREAM CG11400	transposable element FlyBase
2R	14131523	2R_14131523_SNP [dm3] 2R_18244018_SNP [dm6]	T	C	1.764e^-6	0.006	INTERGENIC
3L	17196295	3L_17196295_SNP [dm3] 3L_17203195_SNP [dm6]	A	G	1.782e^-6	0.006	INTRON Rbp6
3R	17246964	3R_17246964_SNP [dm3] 3R_21421242_SNP [dm6]	A	T	1.782e^-6	0.006	INTRON lbl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16316817	X_16316817_SNP [dm3] X_16422784_SNP [dm6]	G	A	1.811e^-6	0.006	UPSTREAM hang & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	14534638	2R_14534638_INS [dm3] 2R_18647133_INS [dm6]	A	ACAGATTTGCGA...	1.832e^-6	0.006	INTRON SP2637
2R	14534649	2R_14534649_SNP [dm3] 2R_18647144_SNP [dm6]	C	G	1.832e^-6	0.006	INTRON SP2637
2L	19816156	2L_19816156_SNP [dm3] 2L_19816156_SNP [dm6]	T	C	1.841e^-6	0.006	UPSTREAM snRNA:U5:38ABb & 1 other INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3133257	3R_3133257_SNP [dm3] 3R_7307535_SNP [dm6]	T	A	1.841e^-6	0.006	INTRON rn
3R	9889567	3R_9889567_SNP [dm3] 3R_14063845_SNP [dm6]	C	A	1.851e^-6	0.006	INTRON foxo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2R	14127207	2R_14127207_SNP [dm3] 2R_18239702_SNP [dm6]	T	G	1.857e^-6	0.006	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12078140	2L_12078140_SNP [dm3] 2L_12078140_SNP [dm6]	A	T	1.863e^-6	0.006	DOWNSTREAM CG14947 INTERGENIC	regulatory region REDfly_CRMs
3L	8224748	3L_8224748_SNP [dm3] 3L_8231648_SNP [dm6]	A	G	1.879e^-6	0.006	DOWNSTREAM CG7213 EXON CR43953
3R	2757161	3R_2757161_SNP [dm3] 3R_6931439_SNP [dm6]	G	C	1.889e^-6	0.006	INTRON Antp	TF binding site BDTNP1_TFBS_dl
2L	8620532	2L_8620532_SNP [dm3] 2L_8620532_SNP [dm6]	C	T	1.898e^-6	0.006	DOWNSTREAM tRNA:CR31602 INTRON Sema-1a
2L	1359422	2L_1359422_SNP [dm3] 2L_1359422_SNP [dm6]	A	G	1.911e^-6	0.006	SPLICE_SITE_REGION CG31659 DOWNSTREAM NLaz INTRON CG31659
3R	965674	3R_965674_SNP [dm3] 3R_5139952_SNP [dm6]	C	T	1.927e^-6	0.006	UPSTREAM CG12589 INTERGENIC
3L	18095945	3L_18095945_SNP [dm3] 3L_18102845_SNP [dm6]	A	T	1.937e^-6	0.006	INTRON CG13698
2L	1207172	2L_1207172_SNP [dm3] 2L_1207172_SNP [dm6]	A	G	1.981e^-6	0.006	INTERGENIC
2R	1384729	2R_1384729_SNP [dm3] 2R_5497224_SNP [dm6]	T	C	1.981e^-6	0.006	INTRON CG30438
2R	1396834	2R_1396834_SNP [dm3] 2R_5509329_SNP [dm6]	C	A	1.981e^-6	0.006	INTRON CG30438
2R	14321185	2R_14321185_SNP [dm3] 2R_18433680_SNP [dm6]	G	A	1.981e^-6	0.006	INTRON CG30118
2R	1620754	2R_1620754_SNP [dm3] 2R_5733249_SNP [dm6]	C	A	1.981e^-6	0.006	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
2R	1624081	2R_1624081_SNP [dm3] 2R_5736576_SNP [dm6]	C	T	1.981e^-6	0.006	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	1628536	2R_1628536_SNP [dm3] 2R_5741031_SNP [dm6]	A	T	1.981e^-6	0.006	INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
2R	15478974	2R_15478974_SNP [dm3] 2R_19591469_SNP [dm6]	C	T	1.983e^-6	0.006	INTRON sm
2R	12623547	2R_12623547_SNP [dm3] 2R_16736042_SNP [dm6]	A	G	1.984e^-6	0.006	DOWNSTREAM CG43104 INTERGENIC
3L	20879145	3L_20879145_SNP [dm3] 3L_20886045_SNP [dm6]	G	T	1.986e^-6	0.006	UPSTREAM CG32432 DOWNSTREAM CR44686 INTERGENIC
3L	14875437	3L_14875437_SNP [dm3] 3L_14882337_SNP [dm6]	T	A	1.997e^-6	0.006	DOWNSTREAM CG17839 INTERGENIC
3R	12115099	3R_12115099_SNP [dm3] 3R_16289377_SNP [dm6]	T	C	2.034e^-6	0.007	INTRON gish	TF binding site mE1_TFBS_inv
3L	10533534	3L_10533534_SNP [dm3] 3L_10540434_SNP [dm6]	G	A	2.063e^-6	0.007	INTRON A2bp1
2R	14135254	2R_14135254_SNP [dm3] 2R_18247749_SNP [dm6]	C	A	2.074e^-6	0.007	UPSTREAM CR44420 INTERGENIC
2R	18751673	2R_18751673_SNP [dm3] 2R_22864150_SNP [dm6]	C	T	2.099e^-6	0.007	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	2526054	2L_2526054_SNP [dm3] 2L_2526054_SNP [dm6]	T	C	2.103e^-6	0.007	INTERGENIC
3L	10756433	3L_10756433_SNP [dm3] 3L_10763333_SNP [dm6]	A	T	2.105e^-6	0.007	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	15457017	2R_15457017_SNP [dm3] 2R_19569512_SNP [dm6]	T	C	2.105e^-6	0.007	INTRON sm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15457040	2R_15457040_SNP [dm3] 2R_19569535_SNP [dm6]	A	G	2.105e^-6	0.007	INTRON sm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4133255	2L_4133255_SNP [dm3] 2L_4133255_SNP [dm6]	G	T	2.114e^-6	0.007	INTERGENIC
X	18452734	X_18452734_DEL [dm3] X_18558701_DEL [dm6]	AA	A	2.115e^-6	0.007	INTRON Bx
3R	26297098	3R_26297098_SNP [dm3] 3R_30471376_SNP [dm6]	A	G	2.132e^-6	0.007	INTRON PH4alphaEFB
2R	7678742	2R_7678742_SNP [dm3] 2R_11791237_SNP [dm6]	C	T	2.141e^-6	0.007	INTRON ths
2L	1023698	2L_1023698_DEL [dm3] 2L_1023698_DEL [dm6]	TTTCTCCTCCAACATGTTGC...	T	2.169e^-6	0.007	INTRON IA-2
3R	13727613	3R_13727613_SNP [dm3] 3R_17901891_SNP [dm6]	A	G	2.175e^-6	0.007	INTRON Rim
3R	10041518	3R_10041518_SNP [dm3] 3R_14215796_SNP [dm6]	C	T	2.184e^-6	0.007	SYNONYMOUS_CODING CG9649 UPSTREAM Dop1R1
3L	16199773	3L_16199773_SNP [dm3] 3L_16206673_SNP [dm6]	A	G	2.192e^-6	0.007	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10175906	3R_10175906_SNP [dm3] 3R_14350184_SNP [dm6]	G	A	2.208e^-6	0.007	INTRON NK7.1	TF binding site mE1_TFBS_inv
3R	5851868	3R_5851868_SNP [dm3] 3R_10026146_SNP [dm6]	G	A	2.241e^-6	0.007	UPSTREAM Mical & 1 other INTRON Mical
2L	15567445	2L_15567445_SNP [dm3] 2L_15567445_SNP [dm6]	A	T	2.314e^-6	0.007	INTRON kek3
3L	5483985	3L_5483985_SNP [dm3] 3L_5490885_SNP [dm6]	T	A	2.318e^-6	0.007	INTERGENIC
2L	6387067	2L_6387067_SNP [dm3] 2L_6387067_SNP [dm6]	T	A	2.326e^-6	0.007	INTRON CG42368
2R	1620755	2R_1620755_SNP [dm3] 2R_5733250_SNP [dm6]	C	A	2.333e^-6	0.007	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
3R	2836769	3R_2836769_SNP [dm3] 3R_7011047_SNP [dm6]	T	C	2.333e^-6	0.007	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17748030	2R_17748030_SNP [dm3] 2R_21860525_SNP [dm6]	C	A	2.343e^-6	0.007	UPSTREAM CG9294 INTERGENIC
X	9884626	X_9884626_SNP [dm3] X_9990593_SNP [dm6]	G	T	2.346e^-6	0.007	INTRON CG32694
X	11275456	X_11275456_INS [dm3] X_11381423_INS [dm6]	T	TATATATATT	2.353e^-6	0.007	INTRON dlg1
3R	9889570	3R_9889570_SNP [dm3] 3R_14063848_SNP [dm6]	G	T	2.361e^-6	0.007	INTRON foxo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2R	14534683	2R_14534683_SNP [dm3] 2R_18647178_SNP [dm6]	T	C	2.371e^-6	0.007	INTRON SP2637
X	8618554	X_8618554_SNP [dm3] X_8724521_SNP [dm6]	C	T	2.372e^-6	0.007	UPSTREAM CR43297 INTERGENIC
2L	7010016	2L_7010016_SNP [dm3] 2L_7010016_SNP [dm6]	A	G	2.375e^-6	0.007	UPSTREAM uif INTRON uif	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	1606124	2R_1606124_SNP [dm3] 2R_5718619_SNP [dm6]	T	A	2.375e^-6	0.007	INTRON ap
2L	15318529	2L_15318529_SNP [dm3] 2L_15318529_SNP [dm6]	T	C	2.389e^-6	0.007	SYNONYMOUS_CODING nht	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13334183	X_13334183_SNP [dm3] X_13440150_SNP [dm6]	T	A	2.400e^-6	0.007	INTERGENIC
3R	10163763	3R_10163763_SNP [dm3] 3R_14338041_SNP [dm6]	A	G	2.400e^-6	0.007	INTRON NK7.1
X	13334181	X_13334181_SNP [dm3] X_13440148_SNP [dm6]	T	C	2.405e^-6	0.007	INTERGENIC
2R	14430385	2R_14430385_SNP [dm3] 2R_18542880_SNP [dm6]	C	G	2.424e^-6	0.007	INTRON Rgk2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	23395146	3L_23395146_INS [dm3] 3L_23402046_INS [dm6]	A	CGGCAAAAGATGCAATTGAA...	2.431e^-6	0.007	INTERGENIC
2R	10692854	2R_10692854_SNP [dm3] 2R_14805349_SNP [dm6]	G	A	2.455e^-6	0.007	INTRON kn	regulatory region REDfly_CRMs
3R	26346237	3R_26346237_SNP [dm3] 3R_30520515_SNP [dm6]	C	G	2.475e^-6	0.007	INTRON jdp
2R	5979670	2R_5979670_SNP [dm3] 2R_10092165_SNP [dm6]	C	T	2.504e^-6	0.008	INTRON CG2269
2R	8119592	2R_8119592_INS [dm3] 2R_12232087_INS [dm6]	T	TAAAACGGT	2.515e^-6	0.008	INTERGENIC
3L	17164532	3L_17164532_SNP [dm3] 3L_17171432_SNP [dm6]	A	G	2.535e^-6	0.008	INTRON Rbp6
3L	17164601	3L_17164601_SNP [dm3] 3L_17171501_SNP [dm6]	A	G	2.535e^-6	0.008	INTRON Rbp6
3L	17199494	3L_17199494_SNP [dm3] 3L_17206394_SNP [dm6]	G	A	2.535e^-6	0.008	INTRON Rbp6
3L	17200284	3L_17200284_SNP [dm3] 3L_17207184_SNP [dm6]	G	A	2.535e^-6	0.008	INTRON Rbp6
3L	6542334	3L_6542334_DEL [dm3] 3L_6549234_DEL [dm6]	AAAAA	G	2.539e^-6	0.008	UTR_3_PRIME sfl
3R	9820942	3R_9820942_SNP [dm3] 3R_13995220_SNP [dm6]	A	T	2.575e^-6	0.008	INTRON rdx
3R	3266452	3R_3266452_SNP [dm3] 3R_7440730_SNP [dm6]	T	A	2.587e^-6	0.008	INTRON CG14598
2R	6214479	2R_6214479_SNP [dm3] 2R_10326974_SNP [dm6]	C	G	2.663e^-6	0.008	INTRON CG42732
2R	6215190	2R_6215190_SNP [dm3] 2R_10327685_SNP [dm6]	G	A	2.663e^-6	0.008	INTRON CG42732
3R	26523656	3R_26523656_SNP [dm3] 3R_30697934_SNP [dm6]	C	T	2.668e^-6	0.008	UPSTREAM Pka-C2 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16650771	2R_16650771_SNP [dm3] 2R_20763266_SNP [dm6]	G	A	2.683e^-6	0.008	INTERGENIC
3R	15201750	3R_15201750_SNP [dm3] 3R_19376028_SNP [dm6]	A	G	2.717e^-6	0.008	UPSTREAM CG31404 DOWNSTREAM CG31245 INTRON Ino80
X	15761377	X_15761377_SNP [dm3] X_15867344_SNP [dm6]	G	T	2.764e^-6	0.008	UPSTREAM Gapdh2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5805492	2L_5805492_SNP [dm3] 2L_5805492_SNP [dm6]	C	T	2.779e^-6	0.008	NON_SYNONYMOUS_CODING CG11034	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
X	8155160	X_8155160_SNP [dm3] X_8261127_SNP [dm6]	C	A	2.791e^-6	0.008	INTRON CG1632
3R	19179085	3R_19179085_SNP [dm3] 3R_23353363_SNP [dm6]	C	T	2.798e^-6	0.008	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2940141	2L_2940141_SNP [dm3] 2L_2940141_SNP [dm6]	A	G	2.810e^-6	0.008	INTRON lilli
2L	11911085	2L_11911085_DEL [dm3] 2L_11911085_DEL [dm6]	GG	G	2.833e^-6	0.008	INTRON Pde1c
2L	19817843	2L_19817843_SNP [dm3] 2L_19817843_SNP [dm6]	G	T	2.835e^-6	0.008	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
2R	17025604	2R_17025604_SNP [dm3] 2R_21138099_SNP [dm6]	T	A	2.841e^-6	0.008	INTRON Magi	TF binding site mE1_TFBS_chinmo
3R	2847461	3R_2847461_SNP [dm3] 3R_7021739_SNP [dm6]	G	T	2.842e^-6	0.008	INTERGENIC
X	6549300	X_6549300_SNP [dm3] X_6655267_SNP [dm6]	G	A	2.843e^-6	0.008	NON_SYNONYMOUS_CODING l_1_G0148	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7808916	2R_7808916_SNP [dm3] 2R_11921411_SNP [dm6]	C	G	2.853e^-6	0.008	INTERGENIC
2R	5997935	2R_5997935_SNP [dm3] 2R_10110430_SNP [dm6]	G	T	2.853e^-6	0.008	SYNONYMOUS_CODING Pfk UPSTREAM Pfk DOWNSTREAM 14-3-3zeta
2R	14133161	2R_14133161_SNP [dm3] 2R_18245656_SNP [dm6]	A	C	2.862e^-6	0.008	DOWNSTREAM CR44420 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
2R	14133164	2R_14133164_SNP [dm3] 2R_18245659_SNP [dm6]	G	A	2.862e^-6	0.008	DOWNSTREAM CR44420 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
3R	21781956	3R_21781956_SNP [dm3] 3R_25956234_SNP [dm6]	G	T	2.869e^-6	0.008	UTR_5_PRIME CCAP-R
2R	8569810	2R_8569810_SNP [dm3] 2R_12682305_SNP [dm6]	T	C	2.869e^-6	0.008	SYNONYMOUS_CODING CG8771	TF binding site BDTNP1_TFBS_da
2R	4021575	2R_4021575_DEL [dm3] 2R_8134070_DEL [dm6]	AA	A	2.877e^-6	0.008	UTR_3_PRIME Pabp2 DOWNSTREAM Obp44a & 1 other
2L	16799600	2L_16799600_SNP [dm3] 2L_16799600_SNP [dm6]	A	G	2.966e^-6	0.009	UPSTREAM Ugt36Bc INTRON Ugt36Bc
2L	5842117	2L_5842117_SNP [dm3] 2L_5842117_SNP [dm6]	A	C	2.994e^-6	0.009	INTRON TrissinR
X	3208982	X_3208982_SNP [dm3] X_3314949_SNP [dm6]	C	T	3.011e^-6	0.009	SYNONYMOUS_CODING CG10793 INTRON dnc & 1 other
2R	17303966	2R_17303966_SNP [dm3] 2R_21416461_SNP [dm6]	C	T	3.015e^-6	0.009	INTRON Sdc
2L	19440294	2L_19440294_SNP [dm3] 2L_19440294_SNP [dm6]	G	C	3.021e^-6	0.009	INTRON CG10237	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	77837	2R_77837_SNP [dm3] 2R_4190332_SNP [dm6]	G	T	3.124e^-6	0.009	INTERGENIC
2L	19408112	2L_19408112_SNP [dm3] 2L_19408112_SNP [dm6]	C	A	3.132e^-6	0.009	INTRON Pax
2R	13566004	2R_13566004_SNP [dm3] 2R_17678499_SNP [dm6]	G	A	3.151e^-6	0.009	UTR_5_PRIME Sema-1b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	1782254	2R_1782254_INS [dm3] 2R_5894749_INS [dm6]	T	TATT	3.208e^-6	0.009	INTRON CG43366
3R	4422460	3R_4422460_SNP [dm3] 3R_8596738_SNP [dm6]	G	T	3.230e^-6	0.009	INTRON 5-HT2B
2R	8211005	2R_8211005_SNP [dm3] 2R_12323500_SNP [dm6]	T	C	3.231e^-6	0.009	SYNONYMOUS_CODING CG8841 DOWNSTREAM CG13163	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5483986	3L_5483986_SNP [dm3] 3L_5490886_SNP [dm6]	T	A	3.258e^-6	0.009	INTERGENIC
2R	2583486	2R_2583486_SNP [dm3] 2R_6695981_SNP [dm6]	C	G	3.288e^-6	0.009	SYNONYMOUS_CODING Mob4 UPSTREAM Rab2 DOWNSTREAM CG3270	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15567434	2L_15567434_SNP [dm3] 2L_15567434_SNP [dm6]	A	C	3.302e^-6	0.009	INTRON kek3
2L	15567435	2L_15567435_SNP [dm3] 2L_15567435_SNP [dm6]	G	A	3.302e^-6	0.009	INTRON kek3
3L	9859006	3L_9859006_SNP [dm3] 3L_9865906_SNP [dm6]	G	T	3.311e^-6	0.009	INTRON CG8108
2L	5796045	2L_5796045_SNP [dm3] 2L_5796045_SNP [dm6]	T	C	3.316e^-6	0.009	INTRON CG9171
2R	5979659	2R_5979659_SNP [dm3] 2R_10092154_SNP [dm6]	G	A	3.352e^-6	0.009	INTRON CG2269
3R	19202601	3R_19202601_SNP [dm3] 3R_23376879_SNP [dm6]	G	A	3.367e^-6	0.009	UTR_3_PRIME CG4393 DOWNSTREAM CG4393	TF binding site mE1_TFBS_inv
2R	728597	2R_728597_SNP [dm3] 2R_4841092_SNP [dm6]	G	A	3.367e^-6	0.009	INTERGENIC
2R	6000583	2R_6000583_SNP [dm3] 2R_10113078_SNP [dm6]	A	G	3.382e^-6	0.009	SYNONYMOUS_CODING Pfk
2R	9249649	2R_9249649_SNP [dm3] 2R_13362144_SNP [dm6]	G	A	3.397e^-6	0.009	EXON CR45312
2L	19817846	2L_19817846_INS [dm3] 2L_19817846_INS [dm6]	A	AATTAACAGAGGCATTAGTT...	3.407e^-6	0.009	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
3R	15637401	3R_15637401_SNP [dm3] 3R_19811679_SNP [dm6]	A	T	3.413e^-6	0.009	INTRON bnl	TF binding site mE1_TFBS_sens
3L	4982176	3L_4982176_SNP [dm3] 3L_4982176_SNP [dm6]	G	T	3.459e^-6	0.01	DOWNSTREAM CR45685 INTRON Con	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14059571	3R_14059571_SNP [dm3] 3R_18233849_SNP [dm6]	C	T	3.479e^-6	0.01	INTERGENIC	regulatory region REDfly_CRMs
3L	8873808	3L_8873808_SNP [dm3] 3L_8880708_SNP [dm6]	T	A	3.483e^-6	0.01	INTRON dally
X	847339	X_847339_SNP [dm3] X_953306_SNP [dm6]	T	C	3.488e^-6	0.01	INTERGENIC
3R	6651118	3R_6651118_SNP [dm3] 3R_10825396_SNP [dm6]	A	C	3.529e^-6	0.01	INTERGENIC
2R	6209887	2R_6209887_SNP [dm3] 2R_10322382_SNP [dm6]	T	C	3.543e^-6	0.01	UTR_3_PRIME CG42732 DOWNSTREAM Ndg & 1 other
3L	17898558	3L_17898558_SNP [dm3] 3L_17905458_SNP [dm6]	C	G	3.552e^-6	0.01	INTRON Prestin
2R	19032449	2R_19032449_SNP [dm3] 2R_23144926_SNP [dm6]	G	C	3.567e^-6	0.01	DOWNSTREAM Klp59D INTERGENIC
2R	19032453	2R_19032453_SNP [dm3] 2R_23144930_SNP [dm6]	C	T	3.567e^-6	0.01	DOWNSTREAM Klp59D INTERGENIC
X	8155191	X_8155191_SNP [dm3] X_8261158_SNP [dm6]	C	G	3.608e^-6	0.01	INTRON CG1632
3R	14060914	3R_14060914_SNP [dm3] 3R_18235192_SNP [dm6]	G	T	3.609e^-6	0.01	UPSTREAM repo INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12868995	2R_12868995_SNP [dm3] 2R_16981490_SNP [dm6]	C	A	3.644e^-6	0.01	INTRON Cbp53E
2L	10209073	2L_10209073_INS [dm3] 2L_10209073_INS [dm6]	A	AA	3.665e^-6	0.01	DOWNSTREAM CG5727 INTRON CG5731 EXON CR44845	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	3503829	3L_3503829_SNP [dm3] 3L_3503829_SNP [dm6]	A	G	3.674e^-6	0.01	INTRON CG42324
2L	15338406	2L_15338406_DEL [dm3] 2L_15338406_DEL [dm6]	TAT	T	3.691e^-6	0.01	INTERGENIC
2R	7642972	2R_7642972_SNP [dm3] 2R_11755467_SNP [dm6]	C	G	3.703e^-6	0.01	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	3403794	3L_3403794_SNP [dm3] 3L_3403794_SNP [dm6]	G	A	3.707e^-6	0.01	NON_SYNONYMOUS_CODING sty	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5994571	2R_5994571_DEL [dm3] 2R_10107066_DEL [dm6]	AA	A	3.757e^-6	0.01	INTRON 14-3-3zeta
3R	21771211	3R_21771211_SNP [dm3] 3R_25945489_SNP [dm6]	T	G	3.766e^-6	0.01	INTRON CCAP-R
2R	18908482	2R_18908482_DEL [dm3] 2R_23020959_DEL [dm6]	ACCACC	A	3.823e^-6	0.01	INTRON twi & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17025717	2R_17025717_SNP [dm3] 2R_21138212_SNP [dm6]	G	A	3.859e^-6	0.01	INTRON Magi	TF binding site mE1_TFBS_chinmo
2L	19433784	2L_19433784_DEL [dm3] 2L_19433784_DEL [dm6]	CC	C	3.867e^-6	0.01	INTRON Rab9
3R	14003085	3R_14003085_SNP [dm3] 3R_18177363_SNP [dm6]	G	C	3.867e^-6	0.01	DOWNSTREAM PP2A-B' INTRON PP2A-B'
2L	11479961	2L_11479961_SNP [dm3] 2L_11479961_SNP [dm6]	C	T	3.881e^-6	0.01	INTERGENIC
3R	25293163	3R_25293163_SNP [dm3] 3R_29467441_SNP [dm6]	T	C	3.931e^-6	0.01	INTRON Ptp99A
2R	7680923	2R_7680923_INS [dm3] 2R_11793418_INS [dm6]	A	AGTGC	3.946e^-6	0.011	INTRON ths	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	19408409	2L_19408409_SNP [dm3] 2L_19408409_SNP [dm6]	T	C	3.950e^-6	0.011	INTRON Pax
X	9085438	X_9085438_DEL [dm3] X_9191405_DEL [dm6]	TG	A	3.953e^-6	0.011	UPSTREAM CG12115 & 1 other INTERGENIC
X	10232866	X_10232866_SNP [dm3] X_10338833_SNP [dm6]	T	C	4.011e^-6	0.011	INTRON CG43740
3R	19400474	3R_19400474_SNP [dm3] 3R_23574752_SNP [dm6]	G	A	4.030e^-6	0.011	INTRON beat-IV
3R	21376864	3R_21376864_SNP [dm3] 3R_25551142_SNP [dm6]	C	T	4.064e^-6	0.011	INTRON msi
2R	12868992	2R_12868992_SNP [dm3] 2R_16981487_SNP [dm6]	C	T	4.067e^-6	0.011	INTRON Cbp53E
X	7656662	X_7656662_SNP [dm3] X_7762629_SNP [dm6]	G	A	4.122e^-6	0.011	INTERGENIC
3R	19165714	3R_19165714_SNP [dm3] 3R_23339992_SNP [dm6]	G	C	4.145e^-6	0.011	INTRON pnt
3L	3720446	3L_3720446_SNP [dm3] 3L_3720446_SNP [dm6]	C	T	4.147e^-6	0.011	INTRON CG32264
3L	3720489	3L_3720489_SNP [dm3] 3L_3720489_SNP [dm6]	G	A	4.147e^-6	0.011	INTRON CG32264
3L	3720628	3L_3720628_SNP [dm3] 3L_3720628_SNP [dm6]	G	A	4.147e^-6	0.011	INTRON CG32264
X	10732091	X_10732091_SNP [dm3] X_10838058_SNP [dm6]	G	A	4.147e^-6	0.011	INTRON sbr
2R	14433598	2R_14433598_SNP [dm3] 2R_18546093_SNP [dm6]	G	T	4.194e^-6	0.011	SYNONYMOUS_CODING Rgk2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	25264782	3R_25264782_INS [dm3] 3R_29439060_INS [dm6]	C	CCG	4.222e^-6	0.011	INTRON Ptp99A
3L	3119140	3L_3119140_SNP [dm3] 3L_3119140_SNP [dm6]	A	G	4.231e^-6	0.011	SYNONYMOUS_CODING prominin-like
3R	2676643	3R_2676643_SNP [dm3] 3R_6850921_SNP [dm6]	C	T	4.268e^-6	0.011	UPSTREAM Scr INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	10147204	3L_10147204_SNP [dm3] 3L_10154104_SNP [dm6]	T	C	4.271e^-6	0.011	INTRON dpr10
X	2313896	X_2313896_SNP [dm3] X_2419863_SNP [dm6]	T	C	4.273e^-6	0.011	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_kn
2L	13000108	2L_13000108_SNP [dm3] 2L_13000108_SNP [dm6]	T	A	4.293e^-6	0.011	DOWNSTREAM Vha68-1 INTRON CG12404
3R	12130941	3R_12130941_SNP [dm3] 3R_16305219_SNP [dm6]	G	A	4.380e^-6	0.011	UPSTREAM Zip89B DOWNSTREAM gish INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19478467	3R_19478467_SNP [dm3] 3R_23652745_SNP [dm6]	C	T	4.536e^-6	0.012	INTRON CG31145
2R	17951466	2R_17951466_SNP [dm3] 2R_22063961_SNP [dm6]	A	C	4.552e^-6	0.012	INTRON Snp
2R	17951469	2R_17951469_SNP [dm3] 2R_22063964_SNP [dm6]	G	C	4.552e^-6	0.012	INTRON Snp
3R	26874059	3R_26874059_SNP [dm3] 3R_31048337_SNP [dm6]	C	G	4.557e^-6	0.012	UPSTREAM Aph-4 INTERGENIC
3L	2407926	3L_2407926_SNP [dm3] 3L_2407926_SNP [dm6]	T	A	4.570e^-6	0.012	NON_SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	2958276	X_2958276_SNP [dm3] X_3064243_SNP [dm6]	G	T	4.579e^-6	0.012	INTRON kirre
2L	12154587	2L_12154587_SNP [dm3] 2L_12154587_SNP [dm6]	G	A	4.593e^-6	0.012	INTRON CG31760
3R	17387576	3R_17387576_DEL [dm3] 3R_21561854_DEL [dm6]	GGCAGTGTAAATGTGTGTG...	G	4.597e^-6	0.012	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	825342	2R_825342_SNP [dm3] 2R_4937837_SNP [dm6]	A	T	4.693e^-6	0.012	INTRON Ir41a	transposable element FlyBase
2R	12409864	2R_12409864_SNP [dm3] 2R_16522359_SNP [dm6]	C	A	4.699e^-6	0.012	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl
3L	10882739	3L_10882739_SNP [dm3] 3L_10889639_SNP [dm6]	C	T	4.713e^-6	0.012	UPSTREAM Cpr67Fa1 INTERGENIC
3R	9537908	3R_9537908_SNP [dm3] 3R_13712186_SNP [dm6]	A	C	4.721e^-6	0.012	UPSTREAM primo-2 & 1 other DOWNSTREAM CR34044 INTERGENIC	transposable element FlyBase
X	5272309	X_5272309_SNP [dm3] X_5378276_SNP [dm6]	A	C	4.760e^-6	0.012	INTRON SK
2R	5994636	2R_5994636_DEL [dm3] 2R_10107131_DEL [dm6]	CCC	C	4.811e^-6	0.012	INTRON 14-3-3zeta
2L	17828346	2L_17828346_SNP [dm3] 2L_17828346_SNP [dm6]	A	G	4.847e^-6	0.012	INTRON CadN2
2L	9238281	2L_9238281_SNP [dm3] 2L_9238281_SNP [dm6]	A	G	4.852e^-6	0.012	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	12162742	2L_12162742_SNP [dm3] 2L_12162742_SNP [dm6]	T	C	4.907e^-6	0.012	SPLICE_SITE_REGION CG31760 SYNONYMOUS_CODING CG31760 DOWNSTREAM CG31861
3L	17181043	3L_17181043_SNP [dm3] 3L_17187943_SNP [dm6]	G	C	4.908e^-6	0.012	INTRON Rbp6
3R	14456296	3R_14456296_SNP [dm3] 3R_18630574_SNP [dm6]	C	T	4.910e^-6	0.012	INTRON qin & 1 other
3L	3720563	3L_3720563_SNP [dm3] 3L_3720563_SNP [dm6]	A	T	4.935e^-6	0.012	INTRON CG32264
3L	2430486	3L_2430486_SNP [dm3] 3L_2430486_SNP [dm6]	T	C	4.938e^-6	0.012	INTRON CG45186
2R	17319445	2R_17319445_SNP [dm3] 2R_21431940_SNP [dm6]	A	G	4.976e^-6	0.013	INTRON Sdc
3R	5553677	3R_5553677_DEL [dm3] 3R_9727955_DEL [dm6]	GAGG	G	4.996e^-6	0.013	INTRON FoxP
2L	732174	2L_732174_SNP [dm3] 2L_732174_SNP [dm6]	G	A	5.020e^-6	0.013	INTERGENIC
2R	14129155	2R_14129155_SNP [dm3] 2R_18241650_SNP [dm6]	A	G	5.036e^-6	0.013	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	15651479	3L_15651479_SNP [dm3] 3L_15658379_SNP [dm6]	A	T	5.059e^-6	0.013	UPSTREAM Eig71Ef DOWNSTREAM Eig71Eh & 1 other INTERGENIC
2L	10045039	2L_10045039_SNP [dm3] 2L_10045039_SNP [dm6]	C	G	5.068e^-6	0.013	INTERGENIC
2L	4118619	2L_4118619_SNP [dm3] 2L_4118619_SNP [dm6]	C	T	5.075e^-6	0.013	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3720556	3L_3720556_SNP [dm3] 3L_3720556_SNP [dm6]	C	T	5.112e^-6	0.013	INTRON CG32264
2R	15282445	2R_15282445_SNP [dm3] 2R_19394940_SNP [dm6]	G	A	5.125e^-6	0.013	INTRON SdhA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	20359477	3L_20359477_SNP [dm3] 3L_20366377_SNP [dm6]	G	T	5.128e^-6	0.013	UTR_5_PRIME Toll-9 UPSTREAM Toll-9 & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	5792787	2L_5792787_SNP [dm3] 2L_5792787_SNP [dm6]	C	A	5.160e^-6	0.013	INTRON CG9171
2R	14425486	2R_14425486_SNP [dm3] 2R_18537981_SNP [dm6]	C	A	5.281e^-6	0.013	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14450561	2R_14450561_INS [dm3] 2R_18563056_INS [dm6]	T	TACAGTTTTTACTATTAT...	5.299e^-6	0.013	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8939749	3R_8939749_SNP [dm3] 3R_13114027_SNP [dm6]	G	A	5.318e^-6	0.013	INTRON timeout
3L	6822884	3L_6822884_SNP [dm3] 3L_6829784_SNP [dm6]	G	C	5.365e^-6	0.013	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17884816	2R_17884816_SNP [dm3] 2R_21997311_SNP [dm6]	G	A	5.409e^-6	0.013	INTRON CG34370
2R	14130337	2R_14130337_SNP [dm3] 2R_18242832_SNP [dm6]	A	T	5.423e^-6	0.013	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	1216829	3R_1216829_SNP [dm3] 3R_5391107_SNP [dm6]	C	T	5.438e^-6	0.013	INTRON kkv	regulatory region REDfly_CRMs
3L	16821215	3L_16821215_SNP [dm3] 3L_16828115_SNP [dm6]	G	A	5.517e^-6	0.014	INTRON CG13024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8649057	2L_8649057_SNP [dm3] 2L_8649057_SNP [dm6]	T	A	5.551e^-6	0.014	INTRON Sema-1a
2L	21109868	2L_21109868_SNP [dm3] 2L_21109868_SNP [dm6]	C	T	5.577e^-6	0.014	INTRON Nhe2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10882755	3L_10882755_SNP [dm3] 3L_10889655_SNP [dm6]	T	G	5.614e^-6	0.014	UPSTREAM Cpr67Fa1 INTERGENIC
X	8155153	X_8155153_SNP [dm3] X_8261120_SNP [dm6]	T	C	5.623e^-6	0.014	INTRON CG1632
2R	5981424	2R_5981424_SNP [dm3] 2R_10093919_SNP [dm6]	C	T	5.656e^-6	0.014	SYNONYMOUS_CODING CG2269	TF binding site mE1_TFBS_cad
3L	20981220	3L_20981220_SNP [dm3] 3L_20988120_SNP [dm6]	C	T	5.671e^-6	0.014	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	2676730	3R_2676730_SNP [dm3] 3R_6851008_SNP [dm6]	G	C	5.808e^-6	0.014	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	9363654	2R_9363654_SNP [dm3] 2R_13476149_SNP [dm6]	C	T	5.839e^-6	0.014	INTRON arr
2L	4713154	2L_4713154_SNP [dm3] 2L_4713154_SNP [dm6]	T	C	5.872e^-6	0.014	INTRON CG34351
2L	12373860	2L_12373860_SNP [dm3] 2L_12373860_SNP [dm6]	A	G	5.884e^-6	0.014	NON_SYNONYMOUS_CODING bru-2 INTRON bru-2
3R	13785223	3R_13785223_SNP [dm3] 3R_17959501_SNP [dm6]	C	T	5.933e^-6	0.014	INTRON cpo
3R	3423669	3R_3423669_SNP [dm3] 3R_7597947_SNP [dm6]	T	A	5.948e^-6	0.014	INTRON CG34127
3R	23628509	3R_23628509_SNP [dm3] 3R_27802787_SNP [dm6]	G	A	5.977e^-6	0.014	INTRON CG34353
2R	14128947	2R_14128947_SNP [dm3] 2R_18241442_SNP [dm6]	G	T	6.011e^-6	0.014	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10219814	2R_10219814_SNP [dm3] 2R_14332309_SNP [dm6]	A	G	6.037e^-6	0.015	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	10868453	2R_10868453_SNP [dm3] 2R_14980948_SNP [dm6]	G	A	6.076e^-6	0.015	UPSTREAM pcs DOWNSTREAM ckn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	11866030	2L_11866030_SNP [dm3] 2L_11866030_SNP [dm6]	T	C	6.159e^-6	0.015	INTRON Pde1c
2R	8715534	2R_8715534_SNP [dm3] 2R_12828029_SNP [dm6]	A	T	6.204e^-6	0.015	INTERGENIC
2R	8715536	2R_8715536_SNP [dm3] 2R_12828031_SNP [dm6]	A	T	6.204e^-6	0.015	INTERGENIC
X	11836506	X_11836506_SNP [dm3] X_11942473_SNP [dm6]	T	G	6.215e^-6	0.015	INTRON cac
2R	16610461	2R_16610461_SNP [dm3] 2R_20722956_SNP [dm6]	C	T	6.218e^-6	0.015	INTRON dpr EXON CR44660
2R	19116461	2R_19116461_SNP [dm3] 2R_23228938_SNP [dm6]	C	T	6.225e^-6	0.015	INTERGENIC
2R	17319448	2R_17319448_SNP [dm3] 2R_21431943_SNP [dm6]	G	T	6.254e^-6	0.015	INTRON Sdc
2R	14134842	2R_14134842_INS [dm3] 2R_18247337_INS [dm6]	A	ATCCA	6.319e^-6	0.015	UPSTREAM CR44420 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	14134844	2R_14134844_SNP [dm3] 2R_18247339_SNP [dm6]	G	C	6.319e^-6	0.015	UPSTREAM CR44420 INTERGENIC	TF binding site BDTNP1_TFBS_da
X	11821855	X_11821855_SNP [dm3] X_11927822_SNP [dm6]	G	A	6.363e^-6	0.015	SYNONYMOUS_CODING CG10362
X	11822727	X_11822727_SNP [dm3] X_11928694_SNP [dm6]	A	G	6.363e^-6	0.015	SYNONYMOUS_CODING CG10362
X	11822940	X_11822940_SNP [dm3] X_11928907_SNP [dm6]	G	T	6.363e^-6	0.015	SYNONYMOUS_CODING CG10362
3L	7383576	3L_7383576_SNP [dm3] 3L_7390476_SNP [dm6]	C	T	6.414e^-6	0.015	UPSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_inv
2L	12989719	2L_12989719_SNP [dm3] 2L_12989719_SNP [dm6]	C	T	6.442e^-6	0.015	INTERGENIC
2R	11803038	2R_11803038_SNP [dm3] 2R_15915533_SNP [dm6]	G	A	6.511e^-6	0.015	UPSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	25481805	3R_25481805_DEL [dm3] 3R_29656083_DEL [dm6]	AT	A	6.528e^-6	0.015	INTRON Dop1R2
2L	6396440	2L_6396440_SNP [dm3] 2L_6396440_SNP [dm6]	A	G	6.560e^-6	0.015	SYNONYMOUS_CODING CG42369 INTRON CG42368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6786133	X_6786133_SNP [dm3] X_6892100_SNP [dm6]	C	T	6.582e^-6	0.015	INTERGENIC
2L	8348008	2L_8348008_INS [dm3] 2L_8348008_INS [dm6]	A	AA	6.629e^-6	0.015	INTRON CG7778
X	13962349	X_13962349_DEL [dm3] X_14068316_DEL [dm6]	ACTCGTAA	A	6.716e^-6	0.015	INTERGENIC
3L	6807905	3L_6807905_SNP [dm3] 3L_6814805_SNP [dm6]	C	T	6.763e^-6	0.015	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8887836	2R_8887836_SNP [dm3] 2R_13000331_SNP [dm6]	C	T	6.918e^-6	0.015	SYNONYMOUS_CODING Su_z_2
2R	18907119	2R_18907119_SNP [dm3] 2R_23019596_SNP [dm6]	T	C	7.089e^-6	0.015	INTRON twi & 1 other
3L	17159024	3L_17159024_SNP [dm3] 3L_17165924_SNP [dm6]	G	C	7.099e^-6	0.015	UPSTREAM CR43433 INTRON Rbp6
3R	10175120	3R_10175120_SNP [dm3] 3R_14349398_SNP [dm6]	T	C	7.254e^-6	0.015	INTRON NK7.1	TF binding site mE1_TFBS_inv
2R	17329703	2R_17329703_SNP [dm3] 2R_21442198_SNP [dm6]	T	C	7.283e^-6	0.015	INTRON Sdc
X	13333799	X_13333799_SNP [dm3] X_13439766_SNP [dm6]	A	G	7.283e^-6	0.015	INTERGENIC
X	5478300	X_5478300_SNP [dm3] X_5584267_SNP [dm6]	T	C	7.283e^-6	0.015	INTERGENIC
2L	10976372	2L_10976372_SNP [dm3] 2L_10976372_SNP [dm6]	T	C	7.297e^-6	0.015	UTR_5_PRIME l_2_06225 UPSTREAM SCAR & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10977058	2L_10977058_SNP [dm3] 2L_10977058_SNP [dm6]	A	G	7.297e^-6	0.015	START_GAINED SCAR UTR_5_PRIME SCAR UPSTREAM l_2_06225 INTRON SCAR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_zfh1
2L	12628868	2L_12628868_SNP [dm3] 2L_12628868_SNP [dm6]	T	C	7.297e^-6	0.015	DOWNSTREAM nub INTRON Ref2
2L	14972060	2L_14972060_SNP [dm3] 2L_14972060_SNP [dm6]	T	G	7.297e^-6	0.015	UTR_5_PRIME CG42313
2L	19816285	2L_19816285_SNP [dm3] 2L_19816285_SNP [dm6]	A	G	7.297e^-6	0.015	UPSTREAM snRNA:U5:38ABb & 1 other INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21713744	2L_21713744_SNP [dm3] 2L_21713744_SNP [dm6]	A	T	7.297e^-6	0.015	INTRON CG31619
2L	2940069	2L_2940069_SNP [dm3] 2L_2940069_SNP [dm6]	C	T	7.297e^-6	0.015	INTRON lilli
2L	3701815	2L_3701815_SNP [dm3] 2L_3701815_SNP [dm6]	G	A	7.297e^-6	0.015	UPSTREAM CG43145 & 1 other DOWNSTREAM Sfp24C1 & 1 other INTERGENIC
2L	7757697	2L_7757697_SNP [dm3] 2L_7757697_SNP [dm6]	G	T	7.297e^-6	0.015	DOWNSTREAM CG14538 INTRON CG7196
2L	7757721	2L_7757721_SNP [dm3] 2L_7757721_SNP [dm6]	A	G	7.297e^-6	0.015	DOWNSTREAM CG14538 INTRON CG7196
2L	7757763	2L_7757763_SNP [dm3] 2L_7757763_SNP [dm6]	C	A	7.297e^-6	0.015	DOWNSTREAM CG14538 INTRON CG7196
2L	9488545	2L_9488545_SNP [dm3] 2L_9488545_SNP [dm6]	G	A	7.297e^-6	0.015	INTERGENIC
2L	9501655	2L_9501655_SNP [dm3] 2L_9501655_SNP [dm6]	A	G	7.297e^-6	0.015	INTRON CG33298
2R	13277003	2R_13277003_SNP [dm3] 2R_17389498_SNP [dm6]	C	A	7.297e^-6	0.015	UPSTREAM CR44344 INTERGENIC	TF binding site mE1_TFBS_Kr
2R	1342953	2R_1342953_SNP [dm3] 2R_5455448_SNP [dm6]	A	T	7.297e^-6	0.015	UTR_3_PRIME laccase2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14303578	2R_14303578_SNP [dm3] 2R_18416073_SNP [dm6]	G	T	7.297e^-6	0.015	SYNONYMOUS_CODING Dp1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14307267	2R_14307267_SNP [dm3] 2R_18419762_SNP [dm6]	C	T	7.297e^-6	0.015	UTR_3_PRIME Dp1	TF binding site mE1_TFBS_cad
2R	14307889	2R_14307889_SNP [dm3] 2R_18420384_SNP [dm6]	G	T	7.297e^-6	0.015	UTR_3_PRIME Dp1
2R	14308557	2R_14308557_SNP [dm3] 2R_18421052_SNP [dm6]	A	G	7.297e^-6	0.015	UTR_3_PRIME Dp1 UPSTREAM CG5174 DOWNSTREAM Dp1	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	14309023	2R_14309023_SNP [dm3] 2R_18421518_SNP [dm6]	C	G	7.297e^-6	0.015	UTR_5_PRIME CG5174 DOWNSTREAM Dp1	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2R	14309253	2R_14309253_SNP [dm3] 2R_18421748_SNP [dm6]	G	A	7.297e^-6	0.015	DOWNSTREAM Dp1 INTRON CG5174	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14545524	2R_14545524_SNP [dm3] 2R_18658019_SNP [dm6]	T	G	7.297e^-6	0.015	DOWNSTREAM Gint3 & 1 other INTRON SP2637
2R	14545527	2R_14545527_SNP [dm3] 2R_18658022_SNP [dm6]	C	A	7.297e^-6	0.015	DOWNSTREAM Gint3 & 1 other INTRON SP2637
2R	14545550	2R_14545550_SNP [dm3] 2R_18658045_SNP [dm6]	C	T	7.297e^-6	0.015	DOWNSTREAM Gint3 & 1 other INTRON SP2637
2R	1563384	2R_1563384_SNP [dm3] 2R_5675879_SNP [dm6]	A	G	7.297e^-6	0.015	DOWNSTREAM scaf INTERGENIC
2R	1579553	2R_1579553_SNP [dm3] 2R_5692048_SNP [dm6]	C	A	7.297e^-6	0.015	UPSTREAM scaf INTERGENIC
2R	15911633	2R_15911633_SNP [dm3] 2R_20024128_SNP [dm6]	G	A	7.297e^-6	0.015	INTERGENIC
2R	16049901	2R_16049901_SNP [dm3] 2R_20162396_SNP [dm6]	T	C	7.297e^-6	0.015	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16064233	2R_16064233_SNP [dm3] 2R_20176728_SNP [dm6]	G	A	7.297e^-6	0.015	INTERGENIC
2R	18280527	2R_18280527_SNP [dm3] 2R_22393022_SNP [dm6]	C	T	7.297e^-6	0.015	UTR_3_PRIME CG13506 DOWNSTREAM babos
2R	18697097	2R_18697097_SNP [dm3] 2R_22809592_SNP [dm6]	A	G	7.297e^-6	0.015	INTRON stl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18697211	2R_18697211_SNP [dm3] 2R_22809706_SNP [dm6]	C	T	7.297e^-6	0.015	INTRON stl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19256512	2R_19256512_SNP [dm3] 2R_23368989_SNP [dm6]	C	T	7.297e^-6	0.015	NON_SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad
2R	19318487	2R_19318487_SNP [dm3] 2R_23430964_SNP [dm6]	G	A	7.297e^-6	0.015	INTRON CG9815
2R	5820066	2R_5820066_SNP [dm3] 2R_9932561_SNP [dm6]	C	G	7.297e^-6	0.015	INTRON Mef2	regulatory region FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5822433	2R_5822433_SNP [dm3] 2R_9934928_SNP [dm6]	A	T	7.297e^-6	0.015	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	683309	2R_683309_SNP [dm3] 2R_4795804_SNP [dm6]	G	T	7.297e^-6	0.015	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2R	7566737	2R_7566737_SNP [dm3] 2R_11679232_SNP [dm6]	T	C	7.297e^-6	0.015	UPSTREAM Buffy INTRON Roc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8130048	2R_8130048_SNP [dm3] 2R_12242543_SNP [dm6]	G	A	7.297e^-6	0.015	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	8133176	2R_8133176_SNP [dm3] 2R_12245671_SNP [dm6]	A	T	7.297e^-6	0.015	UPSTREAM CG43244 INTERGENIC
2R	8133178	2R_8133178_DEL [dm3] 2R_12245673_DEL [dm6]	CATGCGAGTTG...	C	7.297e^-6	0.015	UPSTREAM CG43244 INTERGENIC
2R	8133190	2R_8133190_DEL [dm3] 2R_12245685_DEL [dm6]	AGGTC	A	7.297e^-6	0.015	UPSTREAM CG43244 INTERGENIC
2R	8133198	2R_8133198_MNP [dm3] 2R_12245693_MNP [dm6]	AGTT	GTCC	7.297e^-6	0.015	UPSTREAM CG43244 DOWNSTREAM CR44315 INTERGENIC
2R	8135737	2R_8135737_SNP [dm3] 2R_12248232_SNP [dm6]	T	G	7.297e^-6	0.015	INTERGENIC
2R	8135814	2R_8135814_SNP [dm3] 2R_12248309_SNP [dm6]	A	G	7.297e^-6	0.015	INTERGENIC
2R	856720	2R_856720_SNP [dm3] 2R_4969215_SNP [dm6]	A	C	7.297e^-6	0.015	INTRON Ir41a	transposable element FlyBase
2R	856773	2R_856773_SNP [dm3] 2R_4969268_SNP [dm6]	G	A	7.297e^-6	0.015	INTRON Ir41a	transposable element FlyBase
2R	9122424	2R_9122424_SNP [dm3] 2R_13234919_SNP [dm6]	C	A	7.297e^-6	0.015	UTR_5_PRIME CG4670	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12036146	3L_12036146_SNP [dm3] 3L_12043046_SNP [dm6]	C	T	7.297e^-6	0.015	NON_SYNONYMOUS_CODING CG6793 INTRON rols	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12656625	3L_12656625_SNP [dm3] 3L_12663525_SNP [dm6]	C	G	7.297e^-6	0.015	INTERGENIC
3L	12962400	3L_12962400_SNP [dm3] 3L_12969300_SNP [dm6]	T	A	7.297e^-6	0.015	INTERGENIC
3L	12975840	3L_12975840_SNP [dm3] 3L_12982740_SNP [dm6]	G	A	7.297e^-6	0.015	INTERGENIC
3L	13234629	3L_13234629_SNP [dm3] 3L_13241529_SNP [dm6]	G	A	7.297e^-6	0.015	INTRON caps
3L	13739678	3L_13739678_SNP [dm3] 3L_13746578_SNP [dm6]	C	T	7.297e^-6	0.015	INTRON bru-3
3L	1393595	3L_1393595_SNP [dm3] 3L_1393595_SNP [dm6]	T	A	7.297e^-6	0.015	INTRON Ptp61F
3L	1394514	3L_1394514_SNP [dm3] 3L_1394514_SNP [dm6]	G	C	7.297e^-6	0.015	INTRON Ptp61F
3L	13990593	3L_13990593_SNP [dm3] 3L_13997493_SNP [dm6]	T	G	7.297e^-6	0.015	SYNONYMOUS_CODING CG17361 DOWNSTREAM 26-29-p & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14415912	3L_14415912_SNP [dm3] 3L_14422812_SNP [dm6]	C	T	7.297e^-6	0.015	INTRON bbg
3L	14415916	3L_14415916_SNP [dm3] 3L_14422816_SNP [dm6]	C	T	7.297e^-6	0.015	INTRON bbg
3L	14415917	3L_14415917_SNP [dm3] 3L_14422817_SNP [dm6]	G	A	7.297e^-6	0.015	INTRON bbg
3L	15057550	3L_15057550_SNP [dm3] 3L_15064450_SNP [dm6]	T	C	7.297e^-6	0.015	INTRON Sytbeta	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15607912	3L_15607912_SNP [dm3] 3L_15614812_SNP [dm6]	A	C	7.297e^-6	0.015	INTRON comm3
3L	16175563	3L_16175563_SNP [dm3] 3L_16182463_SNP [dm6]	T	A	7.297e^-6	0.015	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16199351	3L_16199351_SNP [dm3] 3L_16206251_SNP [dm6]	G	A	7.297e^-6	0.015	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16199463	3L_16199463_SNP [dm3] 3L_16206363_SNP [dm6]	G	A	7.297e^-6	0.015	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16199777	3L_16199777_SNP [dm3] 3L_16206677_SNP [dm6]	T	C	7.297e^-6	0.015	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16200176	3L_16200176_SNP [dm3] 3L_16207076_SNP [dm6]	T	C	7.297e^-6	0.015	INTERGENIC
3L	16216306	3L_16216306_SNP [dm3] 3L_16223206_SNP [dm6]	C	T	7.297e^-6	0.015	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3L	17732976	3L_17732976_SNP [dm3] 3L_17739876_SNP [dm6]	C	T	7.297e^-6	0.015	UPSTREAM CG7460 INTRON Ccn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18277931	3L_18277931_SNP [dm3] 3L_18284831_SNP [dm6]	G	T	7.297e^-6	0.015	INTERGENIC
3L	18298312	3L_18298312_SNP [dm3] 3L_18305212_SNP [dm6]	G	A	7.297e^-6	0.015	UPSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18386141	3L_18386141_SNP [dm3] 3L_18393041_SNP [dm6]	T	G	7.297e^-6	0.015	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	18386764	3L_18386764_SNP [dm3] 3L_18393664_SNP [dm6]	T	A	7.297e^-6	0.015	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1965291	3L_1965291_SNP [dm3] 3L_1965291_SNP [dm6]	A	C	7.297e^-6	0.015	INTRON SCOT	TF binding site BDTNP1_TFBS_sna
3L	2392241	3L_2392241_SNP [dm3] 3L_2392241_SNP [dm6]	A	T	7.297e^-6	0.015	INTRON CG45186
3L	2392246	3L_2392246_SNP [dm3] 3L_2392246_SNP [dm6]	A	T	7.297e^-6	0.015	INTRON CG45186
3L	2392263	3L_2392263_SNP [dm3] 3L_2392263_SNP [dm6]	T	C	7.297e^-6	0.015	INTRON CG45186
3L	2392284	3L_2392284_SNP [dm3] 3L_2392284_SNP [dm6]	A	T	7.297e^-6	0.015	INTRON CG45186
3L	2392343	3L_2392343_SNP [dm3] 3L_2392343_SNP [dm6]	G	A	7.297e^-6	0.015	INTRON CG45186
3L	2758585	3L_2758585_SNP [dm3] 3L_2758585_SNP [dm6]	C	T	7.297e^-6	0.015	INTRON Mrtf	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6527529	3L_6527529_SNP [dm3] 3L_6534429_SNP [dm6]	C	T	7.297e^-6	0.015	INTRON sfl
3L	6530183	3L_6530183_SNP [dm3] 3L_6537083_SNP [dm6]	A	G	7.297e^-6	0.015	INTRON sfl
3L	739173	3L_739173_SNP [dm3] 3L_739173_SNP [dm6]	G	A	7.297e^-6	0.015	UTR_5_PRIME hng3 INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7421874	3L_7421874_SNP [dm3] 3L_7428774_SNP [dm6]	C	T	7.297e^-6	0.015	INTRON CG42458
3L	778878	3L_778878_SNP [dm3] 3L_778878_SNP [dm6]	A	T	7.297e^-6	0.015	INTERGENIC
3L	7943701	3L_7943701_SNP [dm3] 3L_7950601_SNP [dm6]	A	G	7.297e^-6	0.015	SYNONYMOUS_CODING exex
3L	8064141	3L_8064141_DEL [dm3] 3L_8071041_DEL [dm6]	GAGATTTCACATT...	G	7.297e^-6	0.015	UTR_5_PRIME Ect4	TF binding site mE1_TFBS_HSA
3L	8098954	3L_8098954_SNP [dm3] 3L_8105854_SNP [dm6]	C	A	7.297e^-6	0.015	UTR_3_PRIME Ect4 INTRON Ect4
3L	8101708	3L_8101708_SNP [dm3] 3L_8108608_SNP [dm6]	T	C	7.297e^-6	0.015	UPSTREAM fan DOWNSTREAM Ect4 INTRON Ect4
3R	11215866	3R_11215866_INS [dm3] 3R_15390144_INS [dm6]	A	AAACACA	7.297e^-6	0.015	INTRON Rbp
3R	11215974	3R_11215974_SNP [dm3] 3R_15390252_SNP [dm6]	G	C	7.297e^-6	0.015	INTRON Rbp
3R	11587303	3R_11587303_SNP [dm3] 3R_15761581_SNP [dm6]	G	T	7.297e^-6	0.015	INTERGENIC
3R	14886906	3R_14886906_SNP [dm3] 3R_19061184_SNP [dm6]	G	C	7.297e^-6	0.015	INTRON cdi	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16480469	3R_16480469_SNP [dm3] 3R_20654747_SNP [dm6]	A	G	7.297e^-6	0.015	INTRON Nep4
3R	16719561	3R_16719561_SNP [dm3] 3R_20893839_SNP [dm6]	T	C	7.297e^-6	0.015	UPSTREAM CR44947 DOWNSTREAM CG10830 INTERGENIC
3R	16723859	3R_16723859_SNP [dm3] 3R_20898137_SNP [dm6]	C	G	7.297e^-6	0.015	UPSTREAM CG10830 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16857285	3R_16857285_SNP [dm3] 3R_21031563_SNP [dm6]	G	A	7.297e^-6	0.015	INTRON Dhc93AB
3R	17241431	3R_17241431_DEL [dm3] 3R_21415709_DEL [dm6]	ATTTGTA	T	7.297e^-6	0.015	INTRON lbl
3R	17243482	3R_17243482_SNP [dm3] 3R_21417760_SNP [dm6]	C	A	7.297e^-6	0.015	INTRON lbl	TF binding site mE1_TFBS_cad
3R	17247147	3R_17247147_SNP [dm3] 3R_21421425_SNP [dm6]	G	A	7.297e^-6	0.015	INTRON lbl	TF binding site mE1_TFBS_cad
3R	17454501	3R_17454501_SNP [dm3] 3R_21628779_SNP [dm6]	C	T	7.297e^-6	0.015	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	17454725	3R_17454725_SNP [dm3] 3R_21629003_SNP [dm6]	G	A	7.297e^-6	0.015	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	17454845	3R_17454845_DEL [dm3] 3R_21629123_DEL [dm6]	AAC	T	7.297e^-6	0.015	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	17454871	3R_17454871_SNP [dm3] 3R_21629149_SNP [dm6]	A	G	7.297e^-6	0.015	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	18839912	3R_18839912_SNP [dm3] 3R_23014190_SNP [dm6]	C	T	7.297e^-6	0.015	SYNONYMOUS_CODING CG6688	TF binding site mE1_TFBS_chinmo
3R	19275125	3R_19275125_SNP [dm3] 3R_23449403_SNP [dm6]	C	A	7.297e^-6	0.015	INTRON CG4374
3R	22446229	3R_22446229_SNP [dm3] 3R_26620507_SNP [dm6]	C	A	7.297e^-6	0.015	DOWNSTREAM TwdlP & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25853906	3R_25853906_SNP [dm3] 3R_30028184_SNP [dm6]	T	G	7.297e^-6	0.015	INTRON Axn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3048456	3R_3048456_SNP [dm3] 3R_7222734_SNP [dm6]	A	G	7.297e^-6	0.015	INTERGENIC
3R	4901797	3R_4901797_SNP [dm3] 3R_9076075_SNP [dm6]	A	G	7.297e^-6	0.015	INTRON pum
3R	5215112	3R_5215112_SNP [dm3] 3R_9389390_SNP [dm6]	G	T	7.297e^-6	0.015	INTRON FER
3R	5854163	3R_5854163_SNP [dm3] 3R_10028441_SNP [dm6]	A	G	7.297e^-6	0.015	INTRON Mical
3R	9533065	3R_9533065_SNP [dm3] 3R_13707343_SNP [dm6]	C	A	7.297e^-6	0.015	INTRON Adgf-C	TF binding site mE1_TFBS_cad
3R	9736468	3R_9736468_DEL [dm3] 3R_13910746_DEL [dm6]	TTCCAAGATAGTA...	T	7.297e^-6	0.015	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11554058	X_11554058_SNP [dm3] X_11660025_SNP [dm6]	A	G	7.297e^-6	0.015	INTRON Ptp10D	TF binding site mE1_TFBS_HSA
X	1662248	X_1662248_SNP [dm3] X_1768215_SNP [dm6]	C	T	7.297e^-6	0.015	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1662501	X_1662501_SNP [dm3] X_1768468_SNP [dm6]	C	T	7.297e^-6	0.015	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	2232645	X_2232645_SNP [dm3] X_2338612_SNP [dm6]	G	A	7.297e^-6	0.015	INTRON phl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7311434	X_7311434_SNP [dm3] X_7417401_SNP [dm6]	A	G	7.297e^-6	0.015	NON_SYNONYMOUS_CODING CG34337
X	8735672	X_8735672_SNP [dm3] X_8841639_SNP [dm6]	G	T	7.297e^-6	0.015	INTRON CG12075
3L	787377	3L_787377_SNP [dm3] 3L_787377_SNP [dm6]	T	C	7.393e^-6	0.015	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	23312701	3R_23312701_SNP [dm3] 3R_27486979_SNP [dm6]	G	C	7.486e^-6	0.015	UPSTREAM Gr98a INTERGENIC
2R	8202577	2R_8202577_SNP [dm3] 2R_12315072_SNP [dm6]	T	A	7.489e^-6	0.015	SPLICE_SITE_REGION CG30046 INTRON CG30046
3R	699796	3R_699796_SNP [dm3] 3R_4874074_SNP [dm6]	C	T	7.498e^-6	0.015	INTERGENIC	regulatory region REDfly_CRMs
3R	21517865	3R_21517865_SNP [dm3] 3R_25692143_SNP [dm6]	T	A	7.505e^-6	0.015	INTERGENIC
2R	16652540	2R_16652540_SNP [dm3] 2R_20765035_SNP [dm6]	A	T	7.517e^-6	0.015	INTERGENIC
3L	17676767	3L_17676767_SNP [dm3] 3L_17683667_SNP [dm6]	A	T	7.535e^-6	0.015	DOWNSTREAM CG34251 INTERGENIC
3L	2257266	3L_2257266_SNP [dm3] 3L_2257266_SNP [dm6]	A	T	7.539e^-6	0.015	UTR_5_PRIME CG1275 UPSTREAM CG2034 & 1 other
3L	2258710	3L_2258710_DEL [dm3] 3L_2258710_DEL [dm6]	TT	T	7.539e^-6	0.015	UTR_3_PRIME CG2034 DOWNSTREAM oxt	TF binding site mE1_TFBS_cad
3L	2260376	3L_2260376_SNP [dm3] 3L_2260376_SNP [dm6]	G	A	7.539e^-6	0.015	SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2260666	3L_2260666_SNP [dm3] 3L_2260666_SNP [dm6]	C	T	7.539e^-6	0.015	NON_SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16918243	2R_16918243_MNP [dm3] 2R_21030738_MNP [dm6]	CCC	ATA	7.637e^-6	0.015	UPSTREAM CR45148 INTERGENIC
2R	5979693	2R_5979693_INS [dm3] 2R_10092188_INS [dm6]	A	ATGCTTTGTTGAA...	7.645e^-6	0.015	INTRON CG2269
2R	8494288	2R_8494288_SNP [dm3] 2R_12606783_SNP [dm6]	A	G	7.651e^-6	0.015	INTRON Amph
3L	2257586	3L_2257586_SNP [dm3] 3L_2257586_SNP [dm6]	C	G	7.657e^-6	0.015	SPLICE_SITE_REGION CG2034 UTR_5_PRIME CG2034 UPSTREAM CG2034 & 1 other	TF binding site mE1_TFBS_cad
2L	12405945	2L_12405945_SNP [dm3] 2L_12405945_SNP [dm6]	T	C	7.675e^-6	0.015	INTRON vir-1
2L	18808486	2L_18808486_SNP [dm3] 2L_18808486_SNP [dm6]	G	T	7.708e^-6	0.015	DOWNSTREAM CG42502 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_inv
3L	18531829	3L_18531829_SNP [dm3] 3L_18538729_SNP [dm6]	G	A	7.766e^-6	0.015	INTERGENIC
2R	4432640	2R_4432640_SNP [dm3] 2R_8545135_SNP [dm6]	C	T	7.777e^-6	0.015	INTERGENIC
3R	15449624	3R_15449624_SNP [dm3] 3R_19623902_SNP [dm6]	G	A	7.820e^-6	0.015	UPSTREAM CG6231 INTRON CG6231	TF binding site BDTNP1_TFBS_dl
2R	14133560	2R_14133560_SNP [dm3] 2R_18246055_SNP [dm6]	C	G	7.830e^-6	0.015	DOWNSTREAM CR44420 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	7953177	3L_7953177_SNP [dm3] 3L_7960077_SNP [dm6]	C	T	7.999e^-6	0.015	INTERGENIC
2L	16179660	2L_16179660_SNP [dm3] 2L_16179660_SNP [dm6]	A	G	8.029e^-6	0.015	UPSTREAM CR43806 INTRON Ca-alpha1D
3R	22582809	3R_22582809_SNP [dm3] 3R_26757087_SNP [dm6]	A	T	8.042e^-6	0.015	EXON CR45562
3L	9803559	3L_9803559_SNP [dm3] 3L_9810459_SNP [dm6]	T	C	8.084e^-6	0.015	INTERGENIC
X	11553955	X_11553955_SNP [dm3] X_11659922_SNP [dm6]	C	G	8.092e^-6	0.015	INTRON Ptp10D	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
2R	13735971	2R_13735971_SNP [dm3] 2R_17848466_SNP [dm6]	C	G	8.093e^-6	0.015	DOWNSTREAM olf186-M INTRON olf186-F
2L	13634888	2L_13634888_SNP [dm3] 2L_13634888_SNP [dm6]	C	A	8.187e^-6	0.015	SYNONYMOUS_CODING kuz	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	15763935	3L_15763935_SNP [dm3] 3L_15770835_SNP [dm6]	A	G	8.187e^-6	0.015	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5861758	3R_5861758_SNP [dm3] 3R_10036036_SNP [dm6]	A	G	8.187e^-6	0.015	INTRON Mical	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	14573576	3L_14573576_SNP [dm3] 3L_14580476_SNP [dm6]	T	A	8.217e^-6	0.015	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5891455	X_5891455_SNP [dm3] X_5997422_SNP [dm6]	C	T	8.217e^-6	0.015	DOWNSTREAM CG4766 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13086439	2L_13086439_SNP [dm3] 2L_13086439_SNP [dm6]	A	C	8.308e^-6	0.015	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4655213	X_4655213_SNP [dm3] X_4761180_SNP [dm6]	T	G	8.336e^-6	0.015	INTERGENIC
2L	15083200	2L_15083200_DEL [dm3] 2L_15083200_DEL [dm6]	ACAATA	A	8.399e^-6	0.015	INTRON CG15270
2R	19579091	2R_19579091_SNP [dm3] 2R_23691568_SNP [dm6]	G	A	8.399e^-6	0.015	DOWNSTREAM Pal2 INTRON CG30183	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	713694	2R_713694_SNP [dm3] 2R_4826189_SNP [dm6]	T	C	8.399e^-6	0.015	INTERGENIC	transposable element FlyBase
3L	13234806	3L_13234806_SNP [dm3] 3L_13241706_SNP [dm6]	A	G	8.399e^-6	0.015	INTRON caps
3L	14415907	3L_14415907_SNP [dm3] 3L_14422807_SNP [dm6]	T	G	8.399e^-6	0.015	INTRON bbg
3L	14875295	3L_14875295_SNP [dm3] 3L_14882195_SNP [dm6]	T	C	8.399e^-6	0.015	UTR_3_PRIME CG17839
3L	16199787	3L_16199787_SNP [dm3] 3L_16206687_SNP [dm6]	G	A	8.399e^-6	0.015	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16199812	3L_16199812_SNP [dm3] 3L_16206712_SNP [dm6]	C	A	8.399e^-6	0.015	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	1967811	3L_1967811_SNP [dm3] 3L_1967811_SNP [dm6]	G	T	8.399e^-6	0.015	INTRON CG1927	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	21911015	3L_21911015_SNP [dm3] 3L_21917915_SNP [dm6]	C	A	8.399e^-6	0.015	INTRON mub
3R	19048728	3R_19048728_SNP [dm3] 3R_23223006_SNP [dm6]	G	T	8.399e^-6	0.015	NON_SYNONYMOUS_CODING cnc
3R	19274814	3R_19274814_SNP [dm3] 3R_23449092_SNP [dm6]	G	C	8.399e^-6	0.015	INTRON CG4374
3R	25186729	3R_25186729_SNP [dm3] 3R_29361007_SNP [dm6]	T	G	8.399e^-6	0.015	INTERGENIC
3R	26278151	3R_26278151_SNP [dm3] 3R_30452429_SNP [dm6]	A	T	8.399e^-6	0.015	INTRON aralar1
3R	2740214	3R_2740214_SNP [dm3] 3R_6914492_SNP [dm6]	G	A	8.399e^-6	0.015	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2751964	3R_2751964_SNP [dm3] 3R_6926242_SNP [dm6]	G	A	8.399e^-6	0.015	INTRON Antp
3R	2850804	3R_2850804_SNP [dm3] 3R_7025082_SNP [dm6]	G	A	8.399e^-6	0.015	INTERGENIC
3R	2851780	3R_2851780_SNP [dm3] 3R_7026058_SNP [dm6]	C	T	8.399e^-6	0.015	INTERGENIC
3R	2990075	3R_2990075_SNP [dm3] 3R_7164353_SNP [dm6]	A	G	8.399e^-6	0.015	SPLICE_SITE_REGION sas UTR_5_PRIME sas INTRON sas
3R	3033857	3R_3033857_SNP [dm3] 3R_7208135_SNP [dm6]	T	C	8.399e^-6	0.015	NON_SYNONYMOUS_CODING CG1288
3R	3068899	3R_3068899_SNP [dm3] 3R_7243177_SNP [dm6]	C	T	8.399e^-6	0.015	NON_SYNONYMOUS_CODING CG14607	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	3083569	3R_3083569_SNP [dm3] 3R_7257847_SNP [dm6]	A	T	8.399e^-6	0.015	INTRON Gld
3R	3100403	3R_3100403_INS [dm3] 3R_7274681_INS [dm6]	A	AAACAGATCAAAACATCTGT...	8.399e^-6	0.015	INTRON rn
3R	3110643	3R_3110643_SNP [dm3] 3R_7284921_SNP [dm6]	C	G	8.399e^-6	0.015	DOWNSTREAM CR44333 INTRON rn
3R	3133483	3R_3133483_SNP [dm3] 3R_7307761_SNP [dm6]	A	T	8.399e^-6	0.015	INTRON rn
3R	3154777	3R_3154777_SNP [dm3] 3R_7329055_SNP [dm6]	G	A	8.399e^-6	0.015	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	3186340	3R_3186340_SNP [dm3] 3R_7360618_SNP [dm6]	G	C	8.399e^-6	0.015	DOWNSTREAM CG17944 INTERGENIC
3R	3192769	3R_3192769_SNP [dm3] 3R_7367047_SNP [dm6]	C	T	8.399e^-6	0.015	SYNONYMOUS_CODING MstProx DOWNSTREAM Mst84Da	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	3239417	3R_3239417_SNP [dm3] 3R_7413695_SNP [dm6]	A	T	8.399e^-6	0.015	INTERGENIC
3R	3257831	3R_3257831_SNP [dm3] 3R_7432109_SNP [dm6]	A	G	8.399e^-6	0.015	INTERGENIC
3R	3263856	3R_3263856_SNP [dm3] 3R_7438134_SNP [dm6]	G	A	8.399e^-6	0.015	INTERGENIC
X	1664333	X_1664333_SNP [dm3] X_1770300_SNP [dm6]	G	A	8.399e^-6	0.015	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1667614	X_1667614_SNP [dm3] X_1773581_SNP [dm6]	C	T	8.399e^-6	0.015	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
X	8735695	X_8735695_SNP [dm3] X_8841662_SNP [dm6]	A	T	8.399e^-6	0.015	INTRON CG12075
X	8155154	X_8155154_SNP [dm3] X_8261121_SNP [dm6]	C	G	8.430e^-6	0.015	INTRON CG1632
2R	6225028	2R_6225028_SNP [dm3] 2R_10337523_SNP [dm6]	T	C	8.438e^-6	0.015	INTRON CG42732
2L	19329573	2L_19329573_SNP [dm3] 2L_19329573_SNP [dm6]	A	C	8.443e^-6	0.015	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	787987	2R_787987_SNP [dm3] 2R_4900482_SNP [dm6]	A	G	8.445e^-6	0.015	INTRON CG44102	transposable element FlyBase
3L	13990575	3L_13990575_SNP [dm3] 3L_13997475_SNP [dm6]	A	G	8.445e^-6	0.015	SYNONYMOUS_CODING CG17361 DOWNSTREAM 26-29-p & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2756433	3R_2756433_SNP [dm3] 3R_6930711_SNP [dm6]	C	A	8.445e^-6	0.015	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	21517779	3R_21517779_INS [dm3] 3R_25692057_INS [dm6]	T	TT	8.455e^-6	0.015	INTERGENIC
3R	21517783	3R_21517783_SNP [dm3] 3R_25692061_SNP [dm6]	C	T	8.455e^-6	0.015	INTERGENIC
2L	1243079	2L_1243079_SNP [dm3] 2L_1243079_SNP [dm6]	G	A	8.459e^-6	0.015	DOWNSTREAM CG5397 INTERGENIC
2L	4133243	2L_4133243_SNP [dm3] 2L_4133243_SNP [dm6]	T	C	8.459e^-6	0.015	INTERGENIC

By genomic position
Variant impact
Gene name

Microbiota_OTU127 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results