DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.423e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.005024

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.103	0.0781

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2317 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	21721824	3R_21721824_SNP [dm3] 3R_25896102_SNP [dm6]	C	T	4.435e^-8	0.03	SYNONYMOUS_CODING CG5948
3R	25157860	3R_25157860_SNP [dm3] 3R_29332138_SNP [dm6]	T	A	8.199e^-8	0.03	INTERGENIC
2L	16702560	2L_16702560_SNP [dm3] 2L_16702560_SNP [dm6]	A	T	1.213e^-7	0.03	EXON CR43670	TF binding site mE1_TFBS_sens
2L	16702612	2L_16702612_SNP [dm3] 2L_16702612_SNP [dm6]	C	T	1.213e^-7	0.03	EXON CR43670	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
2L	16702618	2L_16702618_SNP [dm3] 2L_16702618_SNP [dm6]	G	A	1.213e^-7	0.03	EXON CR43670	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
2L	16702622	2L_16702622_SNP [dm3] 2L_16702622_SNP [dm6]	T	C	1.213e^-7	0.03	EXON CR43670	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
2L	16702664	2L_16702664_SNP [dm3] 2L_16702664_SNP [dm6]	T	C	1.213e^-7	0.03	EXON CR43670	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
2L	2816946	2L_2816946_SNP [dm3] 2L_2816946_SNP [dm6]	T	C	1.273e^-7	0.03	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2816943	2L_2816943_SNP [dm3] 2L_2816943_SNP [dm6]	G	A	2.189e^-7	0.045	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16702691	2L_16702691_SNP [dm3] 2L_16702691_SNP [dm6]	C	A	4.051e^-7	0.069	EXON CR43670	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
2L	2817393	2L_2817393_SNP [dm3] 2L_2817393_SNP [dm6]	A	G	4.126e^-7	0.069	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16702596	2L_16702596_DEL [dm3] 2L_16702596_DEL [dm6]	TGATTTT	T	4.995e^-7	0.069	EXON CR43670	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
2R	18357988	2R_18357988_SNP [dm3] 2R_22470483_SNP [dm6]	C	A	5.463e^-7	0.069	INTRON CG10384	TF binding site mE1_TFBS_chinmo
2L	2817129	2L_2817129_SNP [dm3] 2L_2817129_SNP [dm6]	G	A	5.562e^-7	0.069	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12540675	3L_12540675_DEL [dm3] 3L_12547575_DEL [dm6]	TA	T	5.727e^-7	0.069	INTRON sowah
2L	2818275	2L_2818275_SNP [dm3] 2L_2818275_SNP [dm6]	A	G	5.918e^-7	0.069	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	12540678	3L_12540678_SNP [dm3] 3L_12547578_SNP [dm6]	T	G	6.728e^-7	0.074	INTRON sowah
2L	795992	2L_795992_SNP [dm3] 2L_795992_SNP [dm6]	A	G	7.358e^-7	0.076	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2818389	2L_2818389_SNP [dm3] 2L_2818389_SNP [dm6]	C	T	7.888e^-7	0.077	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2818208	2L_2818208_SNP [dm3] 2L_2818208_SNP [dm6]	G	A	8.308e^-7	0.077	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16702527	2L_16702527_SNP [dm3] 2L_16702527_SNP [dm6]	T	C	9.530e^-7	0.084	EXON CR43670	TF binding site mE1_TFBS_sens
2R	9263204	2R_9263204_SNP [dm3] 2R_13375699_SNP [dm6]	A	C	1.287e^-6	0.109	DOWNSTREAM CG10814 INTERGENIC
X	12029569	X_12029569_DEL [dm3] X_12135536_DEL [dm6]	AATTC	T	1.641e^-6	0.123	INTRON Ten-a
X	12029576	X_12029576_SNP [dm3] X_12135543_SNP [dm6]	T	A	1.641e^-6	0.123	INTRON Ten-a
2R	9263203	2R_9263203_SNP [dm3] 2R_13375698_SNP [dm6]	A	C	1.646e^-6	0.123	DOWNSTREAM CG10814 INTERGENIC
2L	5028463	2L_5028463_SNP [dm3] 2L_5028463_SNP [dm6]	A	G	1.729e^-6	0.124	UPSTREAM vkg INTERGENIC	regulatory region REDfly_CRMs
2L	4726336	2L_4726336_SNP [dm3] 2L_4726336_SNP [dm6]	G	A	1.820e^-6	0.125	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2819082	2L_2819082_SNP [dm3] 2L_2819082_SNP [dm6]	A	G	1.960e^-6	0.13	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2819145	2L_2819145_SNP [dm3] 2L_2819145_SNP [dm6]	A	G	2.299e^-6	0.147	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2817312	2L_2817312_SNP [dm3] 2L_2817312_SNP [dm6]	C	T	2.371e^-6	0.147	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9433676	2R_9433676_INS [dm3] 2R_13546171_INS [dm6]	T	TTT	2.455e^-6	0.147	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2L	2816934	2L_2816934_SNP [dm3] 2L_2816934_SNP [dm6]	A	G	2.617e^-6	0.152	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11528228	3L_11528228_SNP [dm3] 3L_11535128_SNP [dm6]	G	T	2.877e^-6	0.162	UPSTREAM Mob2 INTRON Mob2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7023691	2R_7023691_SNP [dm3] 2R_11136186_SNP [dm6]	C	G	2.973e^-6	0.163	SYNONYMOUS_CODING BBS4
2L	14098648	2L_14098648_SNP [dm3] 2L_14098648_SNP [dm6]	C	G	3.448e^-6	0.183	INTERGENIC
3L	14523305	3L_14523305_INS [dm3] 3L_14530205_INS [dm6]	T	TTTAGGAAAATGTT...	3.666e^-6	0.189	INTRON bbg
2L	5028460	2L_5028460_SNP [dm3] 2L_5028460_SNP [dm6]	G	C	3.756e^-6	0.189	UPSTREAM vkg INTERGENIC	regulatory region REDfly_CRMs
2L	5966473	2L_5966473_SNP [dm3] 2L_5966473_SNP [dm6]	C	T	3.992e^-6	0.192	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12543270	3L_12543270_SNP [dm3] 3L_12550170_SNP [dm6]	C	T	4.035e^-6	0.192	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16702548	2L_16702548_SNP [dm3] 2L_16702548_SNP [dm6]	A	G	4.704e^-6	0.197	EXON CR43670	TF binding site mE1_TFBS_sens
2L	16702573	2L_16702573_SNP [dm3] 2L_16702573_SNP [dm6]	C	A	4.704e^-6	0.197	EXON CR43670	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
2L	16702682	2L_16702682_SNP [dm3] 2L_16702682_SNP [dm6]	A	G	4.704e^-6	0.197	EXON CR43670	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
2L	16702706	2L_16702706_SNP [dm3] 2L_16702706_SNP [dm6]	G	T	4.704e^-6	0.197	EXON CR43670	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
2L	16703229	2L_16703229_SNP [dm3] 2L_16703229_SNP [dm6]	C	T	4.704e^-6	0.197	UPSTREAM CR43670 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	16703121	2L_16703121_SNP [dm3] 2L_16703121_SNP [dm6]	C	T	4.768e^-6	0.197	INTRON CR43670	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	622941	2L_622941_SNP [dm3] 2L_622941_SNP [dm6]	C	G	4.859e^-6	0.197	UPSTREAM CR44797 DOWNSTREAM CR44798 INTERGENIC
3L	10807098	3L_10807098_SNP [dm3] 3L_10813998_SNP [dm6]	C	A	5.445e^-6	0.216	UPSTREAM CG42831 INTERGENIC
2L	16702686	2L_16702686_SNP [dm3] 2L_16702686_SNP [dm6]	G	T	5.677e^-6	0.22	EXON CR43670	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
2L	2817858	2L_2817858_SNP [dm3] 2L_2817858_SNP [dm6]	C	T	5.965e^-6	0.226	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12029567	X_12029567_SNP [dm3] X_12135534_SNP [dm6]	C	T	6.590e^-6	0.238	INTRON Ten-a
3L	11418494	3L_11418494_SNP [dm3] 3L_11425394_SNP [dm6]	T	C	6.661e^-6	0.238	SYNONYMOUS_CODING CG7560	TF binding site mE1_TFBS_cad
2L	11399630	2L_11399630_SNP [dm3] 2L_11399630_SNP [dm6]	G	T	6.791e^-6	0.238	INTERGENIC	regulatory region REDfly_CRMs
3L	5050449	3L_5050449_SNP [dm3] 3L_5050449_SNP [dm6]	C	T	6.791e^-6	0.238	DOWNSTREAM CR43884 INTRON Con
3L	7104263	3L_7104263_SNP [dm3] 3L_7111163_SNP [dm6]	C	T	6.961e^-6	0.239	UTR_5_PRIME form3
3L	7075673	3L_7075673_SNP [dm3] 3L_7082573_SNP [dm6]	T	A	7.065e^-6	0.239	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17175427	3L_17175427_SNP [dm3] 3L_17182327_SNP [dm6]	T	A	7.285e^-6	0.242	INTRON Rbp6
3R	22824299	3R_22824299_SNP [dm3] 3R_26998577_SNP [dm6]	T	G	8.136e^-6	0.255	INTRON RYa-R
2L	11399731	2L_11399731_SNP [dm3] 2L_11399731_SNP [dm6]	A	C	8.265e^-6	0.255	INTERGENIC	regulatory region REDfly_CRMs
2R	9816395	2R_9816395_SNP [dm3] 2R_13928890_SNP [dm6]	A	T	8.339e^-6	0.255	INTRON shot
3L	9999387	3L_9999387_SNP [dm3] 3L_10006287_SNP [dm6]	A	G	8.592e^-6	0.255	INTRON dpr6
2L	9149731	2L_9149731_SNP [dm3] 2L_9149731_SNP [dm6]	C	T	8.670e^-6	0.255	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13714014	3L_13714014_SNP [dm3] 3L_13720914_SNP [dm6]	T	C	8.673e^-6	0.255	INTRON bru-3
2R	17756199	2R_17756199_SNP [dm3] 2R_21868694_SNP [dm6]	T	A	8.844e^-6	0.255	INTERGENIC
2L	14635489	2L_14635489_SNP [dm3] 2L_14635489_SNP [dm6]	A	T	8.880e^-6	0.255	INTRON osp
3L	13720994	3L_13720994_SNP [dm3] 3L_13727894_SNP [dm6]	G	T	8.923e^-6	0.255	INTRON bru-3
2R	17758846	2R_17758846_SNP [dm3] 2R_21871341_SNP [dm6]	A	T	1.054e^-5	0.294	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
3R	22823773	3R_22823773_SNP [dm3] 3R_26998051_SNP [dm6]	C	T	1.069e^-5	0.294	INTRON RYa-R
2R	13132575	2R_13132575_SNP [dm3] 2R_17245070_SNP [dm6]	T	G	1.076e^-5	0.294	DOWNSTREAM CG18469 INTRON mbl
3L	7529598	3L_7529598_SNP [dm3] 3L_7536498_SNP [dm6]	G	A	1.192e^-5	0.321	INTRON lqf
X	5179984	X_5179984_SNP [dm3] X_5285951_SNP [dm6]	G	A	1.298e^-5	0.337	INTERGENIC
3L	1700501	3L_1700501_SNP [dm3] 3L_1700501_SNP [dm6]	G	A	1.327e^-5	0.337	DOWNSTREAM CG13931 INTRON CG7991	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	4427491	2L_4427491_SNP [dm3] 2L_4427491_SNP [dm6]	T	C	1.348e^-5	0.337	INTRON CG15431
3R	27167963	3R_27167963_SNP [dm3] 3R_31342241_SNP [dm6]	G	C	1.357e^-5	0.337	INTRON CG34347
2R	6775239	2R_6775239_SNP [dm3] 2R_10887734_SNP [dm6]	T	G	1.375e^-5	0.337	SYNONYMOUS_CODING CG30020	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2818035	2L_2818035_SNP [dm3] 2L_2818035_SNP [dm6]	C	T	1.376e^-5	0.337	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7060218	3L_7060218_SNP [dm3] 3L_7067118_SNP [dm6]	T	G	1.404e^-5	0.337	INTRON CG8641 & 1 other
2L	19181868	2L_19181868_SNP [dm3] 2L_19181868_SNP [dm6]	C	G	1.413e^-5	0.337	UPSTREAM CG17568 DOWNSTREAM CG42688 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11528243	3L_11528243_SNP [dm3] 3L_11535143_SNP [dm6]	A	T	1.416e^-5	0.337	UPSTREAM Mob2 INTRON Mob2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3575953	3L_3575953_SNP [dm3] 3L_3575953_SNP [dm6]	C	A	1.478e^-5	0.337	INTRON Eip63E
3L	7131490	3L_7131490_SNP [dm3] 3L_7138390_SNP [dm6]	C	A	1.489e^-5	0.337	UTR_5_PRIME melt INTRON melt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3690682	3L_3690682_SNP [dm3] 3L_3690682_SNP [dm6]	C	T	1.496e^-5	0.337	INTERGENIC
X	8812574	X_8812574_INS [dm3] X_8918541_INS [dm6]	A	AC	1.515e^-5	0.337	INTRON rdgA	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1811555	3L_1811555_SNP [dm3] 3L_1811555_SNP [dm6]	G	A	1.519e^-5	0.337	INTRON GV1
3L	14772802	3L_14772802_SNP [dm3] 3L_14779702_SNP [dm6]	G	A	1.520e^-5	0.337	INTRON bmm
3L	7529584	3L_7529584_SNP [dm3] 3L_7536484_SNP [dm6]	C	T	1.552e^-5	0.34	INTRON lqf	TF binding site mE1_TFBS_HSA
3L	5644187	3L_5644187_SNP [dm3] 3L_5651087_SNP [dm6]	G	C	1.616e^-5	0.35	UTR_3_PRIME Blimp-1
3L	8387931	3L_8387931_SNP [dm3] 3L_8394831_SNP [dm6]	T	C	1.673e^-5	0.356	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	11213350	3L_11213350_SNP [dm3] 3L_11220250_SNP [dm6]	A	G	1.701e^-5	0.356	INTRON CG42671	TF binding site mE1_TFBS_cad
2R	17464165	2R_17464165_SNP [dm3] 2R_21576660_SNP [dm6]	T	C	1.702e^-5	0.356	UPSTREAM CG10440 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19497825	2R_19497825_SNP [dm3] 2R_23610302_SNP [dm6]	A	T	1.765e^-5	0.363	UPSTREAM CG4019 INTRON CG17664 & 1 other
2L	3968747	2L_3968747_SNP [dm3] 2L_3968747_SNP [dm6]	A	T	1.773e^-5	0.363	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	13817690	X_13817690_SNP [dm3] X_13923657_SNP [dm6]	A	G	1.794e^-5	0.363	INTRON mamo
3L	3690209	3L_3690209_SNP [dm3] 3L_3690209_SNP [dm6]	C	T	1.899e^-5	0.38	DOWNSTREAM CR43484 INTERGENIC
2R	13132576	2R_13132576_SNP [dm3] 2R_17245071_SNP [dm6]	T	A	1.943e^-5	0.384	DOWNSTREAM CG18469 INTRON mbl
3L	13717956	3L_13717956_DEL [dm3] 3L_13724856_DEL [dm6]	GG	G	1.960e^-5	0.384	INTRON bru-3
3L	1388203	3L_1388203_DEL [dm3] 3L_1388203_DEL [dm6]	CTTAAGAGACATC...	C	2.037e^-5	0.392	DOWNSTREAM ru INTRON Ptp61F
3R	25402225	3R_25402225_SNP [dm3] 3R_29576503_SNP [dm6]	C	T	2.046e^-5	0.392	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_eve mE1_TFBS_HSA
2L	19198106	2L_19198106_SNP [dm3] 2L_19198106_SNP [dm6]	C	T	2.113e^-5	0.401	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14772868	3L_14772868_SNP [dm3] 3L_14779768_SNP [dm6]	T	G	2.205e^-5	0.414	INTRON bmm
3R	22823769	3R_22823769_SNP [dm3] 3R_26998047_SNP [dm6]	T	C	2.234e^-5	0.414	INTRON RYa-R
2L	2817243	2L_2817243_SNP [dm3] 2L_2817243_SNP [dm6]	C	T	2.247e^-5	0.414	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4008347	2L_4008347_SNP [dm3] 2L_4008347_SNP [dm6]	G	A	2.336e^-5	0.418	UPSTREAM CG43774 DOWNSTREAM CG43773 INTERGENIC
2L	15154890	2L_15154890_SNP [dm3] 2L_15154890_SNP [dm6]	G	T	2.349e^-5	0.418	INTERGENIC
3R	23867447	3R_23867447_SNP [dm3] 3R_28041725_SNP [dm6]	T	C	2.363e^-5	0.418	INTRON CG34362
3L	4442531	3L_4442531_SNP [dm3] 3L_4442531_SNP [dm6]	T	C	2.364e^-5	0.418	INTERGENIC
3L	7130403	3L_7130403_SNP [dm3] 3L_7137303_SNP [dm6]	A	T	2.397e^-5	0.418	INTRON melt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3L	7133498	3L_7133498_SNP [dm3] 3L_7140398_SNP [dm6]	C	T	2.482e^-5	0.418	SYNONYMOUS_CODING melt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3652102	3L_3652102_SNP [dm3] 3L_3652102_SNP [dm6]	T	C	2.490e^-5	0.418	INTRON dar1
3R	23633048	3R_23633048_SNP [dm3] 3R_27807326_SNP [dm6]	G	A	2.495e^-5	0.418	INTRON CG34353
2L	14905220	2L_14905220_SNP [dm3] 2L_14905220_SNP [dm6]	A	G	2.514e^-5	0.418	INTERGENIC
2R	13132530	2R_13132530_SNP [dm3] 2R_17245025_SNP [dm6]	T	A	2.546e^-5	0.418	DOWNSTREAM CG18469 INTRON mbl
3L	5044097	3L_5044097_SNP [dm3] 3L_5044097_SNP [dm6]	C	A	2.605e^-5	0.418	INTRON Con
3L	5051142	3L_5051142_SNP [dm3] 3L_5051142_SNP [dm6]	G	T	2.605e^-5	0.418	INTRON Con EXON CR43884
3L	5051407	3L_5051407_SNP [dm3] 3L_5051407_SNP [dm6]	T	C	2.605e^-5	0.418	INTRON Con EXON CR43884
2L	2817276	2L_2817276_SNP [dm3] 2L_2817276_SNP [dm6]	C	T	2.613e^-5	0.418	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1996387	3L_1996387_DEL [dm3] 3L_1996387_DEL [dm6]	CA	G	2.629e^-5	0.418	INTERGENIC
3L	1996247	3L_1996247_SNP [dm3] 3L_1996247_SNP [dm6]	A	G	2.643e^-5	0.418	INTERGENIC
3L	7132778	3L_7132778_SNP [dm3] 3L_7139678_SNP [dm6]	C	T	2.648e^-5	0.418	INTRON melt
3R	22823750	3R_22823750_SNP [dm3] 3R_26998028_SNP [dm6]	C	A	2.743e^-5	0.427	INTRON RYa-R
2L	5028491	2L_5028491_SNP [dm3] 2L_5028491_SNP [dm6]	A	T	2.751e^-5	0.427	UPSTREAM vkg INTERGENIC	regulatory region REDfly_CRMs
2R	8876435	2R_8876435_SNP [dm3] 2R_12988930_SNP [dm6]	A	T	2.833e^-5	0.434	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15332618	2L_15332618_SNP [dm3] 2L_15332618_SNP [dm6]	A	T	2.847e^-5	0.434	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_Trl
3L	7529617	3L_7529617_SNP [dm3] 3L_7536517_SNP [dm6]	T	C	2.978e^-5	0.446	INTRON lqf
3L	10326272	3L_10326272_SNP [dm3] 3L_10333172_SNP [dm6]	G	C	3.024e^-5	0.446	INTERGENIC
3L	1996106	3L_1996106_SNP [dm3] 3L_1996106_SNP [dm6]	T	C	3.052e^-5	0.446	INTERGENIC
2L	10903863	2L_10903863_SNP [dm3] 2L_10903863_SNP [dm6]	A	T	3.066e^-5	0.446	EXON CR45724
3L	5050343	3L_5050343_SNP [dm3] 3L_5050343_SNP [dm6]	C	A	3.093e^-5	0.446	DOWNSTREAM CR43884 INTRON Con
3L	12541741	3L_12541741_SNP [dm3] 3L_12548641_SNP [dm6]	G	A	3.144e^-5	0.446	INTRON sowah
2L	6402244	2L_6402244_SNP [dm3] 2L_6402244_SNP [dm6]	A	C	3.177e^-5	0.446	INTRON CG42368
3L	10807106	3L_10807106_SNP [dm3] 3L_10814006_SNP [dm6]	C	T	3.204e^-5	0.446	UPSTREAM CG42831 INTERGENIC
X	12130908	X_12130908_SNP [dm3] X_12236875_SNP [dm6]	A	C	3.236e^-5	0.446	UPSTREAM CG32655 INTRON Ten-a	TF binding site mE1_TFBS_Kr
2L	5163598	2L_5163598_SNP [dm3] 2L_5163598_SNP [dm6]	T	C	3.244e^-5	0.446	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	7133090	3L_7133090_SNP [dm3] 3L_7139990_SNP [dm6]	A	G	3.276e^-5	0.446	SYNONYMOUS_CODING melt	TF binding site mE1_TFBS_chinmo
3L	7133150	3L_7133150_SNP [dm3] 3L_7140050_SNP [dm6]	T	C	3.276e^-5	0.446	SYNONYMOUS_CODING melt	TF binding site mE1_TFBS_chinmo
3L	7133165	3L_7133165_SNP [dm3] 3L_7140065_SNP [dm6]	T	C	3.276e^-5	0.446	SYNONYMOUS_CODING melt	TF binding site mE1_TFBS_chinmo
3L	7133171	3L_7133171_SNP [dm3] 3L_7140071_SNP [dm6]	C	A	3.276e^-5	0.446	SYNONYMOUS_CODING melt	TF binding site mE1_TFBS_chinmo
3L	11537282	3L_11537282_SNP [dm3] 3L_11544182_SNP [dm6]	A	C	3.282e^-5	0.446	INTRON Mob2
3R	22823779	3R_22823779_SNP [dm3] 3R_26998057_SNP [dm6]	T	G	3.378e^-5	0.452	INTRON RYa-R
3R	23232963	3R_23232963_SNP [dm3] 3R_27407241_SNP [dm6]	A	T	3.419e^-5	0.452	INTRON side	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2807074	2L_2807074_SNP [dm3] 2L_2807074_SNP [dm6]	G	A	3.447e^-5	0.452	INTRON daw	TF binding site BDTNP1_TFBS_dl
2L	2807139	2L_2807139_SNP [dm3] 2L_2807139_SNP [dm6]	G	T	3.447e^-5	0.452	INTRON daw	TF binding site BDTNP1_TFBS_dl
2R	17650493	2R_17650493_SNP [dm3] 2R_21762988_SNP [dm6]	A	C	3.450e^-5	0.452	DOWNSTREAM CR43983 INTERGENIC
2R	9263121	2R_9263121_SNP [dm3] 2R_13375616_SNP [dm6]	G	A	3.517e^-5	0.454	DOWNSTREAM CG10814 INTERGENIC
X	18404757	X_18404757_SNP [dm3] X_18510724_SNP [dm6]	C	G	3.517e^-5	0.454	INTRON Ggt-1	TF binding site mE1_TFBS_cnc
3L	13949903	3L_13949903_INS [dm3] 3L_13956803_INS [dm6]	C	CGAC	3.611e^-5	0.455	INTRON CG32137
3L	3775038	3L_3775038_SNP [dm3] 3L_3775038_SNP [dm6]	T	C	3.651e^-5	0.455	INTRON CG32264
2L	9699411	2L_9699411_SNP [dm3] 2L_9699411_SNP [dm6]	C	T	3.667e^-5	0.455	UPSTREAM hoip & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	10807096	3L_10807096_SNP [dm3] 3L_10813996_SNP [dm6]	C	T	3.676e^-5	0.455	UPSTREAM CG42831 INTERGENIC
2L	15109980	2L_15109980_SNP [dm3] 2L_15109980_SNP [dm6]	G	A	3.779e^-5	0.455	SYNONYMOUS_CODING CG15269	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11603576	3L_11603576_INS [dm3] 3L_11610476_INS [dm6]	A	AGT	3.832e^-5	0.455	DOWNSTREAM Muc68Ca & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11603580	3L_11603580_SNP [dm3] 3L_11610480_SNP [dm6]	T	C	3.832e^-5	0.455	DOWNSTREAM Muc68Ca & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	913916	2L_913916_SNP [dm3] 2L_913916_SNP [dm6]	A	C	3.840e^-5	0.455	UPSTREAM GluRIIC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4726159	2L_4726159_SNP [dm3] 2L_4726159_SNP [dm6]	A	C	3.912e^-5	0.455	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	17720255	2R_17720255_SNP [dm3] 2R_21832750_SNP [dm6]	T	A	3.978e^-5	0.455	SYNONYMOUS_CODING CG34040	TF binding site mE1_TFBS_sens
2R	17720269	2R_17720269_SNP [dm3] 2R_21832764_SNP [dm6]	A	T	3.978e^-5	0.455	NON_SYNONYMOUS_CODING CG34040	TF binding site mE1_TFBS_sens
2L	12643551	2L_12643551_SNP [dm3] 2L_12643551_SNP [dm6]	T	C	3.986e^-5	0.455	INTRON Ref2
2L	10887690	2L_10887690_SNP [dm3] 2L_10887690_SNP [dm6]	T	A	4.004e^-5	0.455	UTR_3_PRIME CG14071 DOWNSTREAM CR44490 & 1 other	TF binding site mE1_TFBS_inv
2R	7565545	2R_7565545_SNP [dm3] 2R_11678040_SNP [dm6]	T	C	4.007e^-5	0.455	DOWNSTREAM Tret1-2 INTRON Roc2
3L	11410136	3L_11410136_SNP [dm3] 3L_11417036_SNP [dm6]	T	A	4.041e^-5	0.455	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	11410138	3L_11410138_SNP [dm3] 3L_11417038_SNP [dm6]	C	T	4.041e^-5	0.455	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	11410141	3L_11410141_SNP [dm3] 3L_11417041_SNP [dm6]	A	T	4.041e^-5	0.455	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	1996393	3L_1996393_SNP [dm3] 3L_1996393_SNP [dm6]	A	G	4.051e^-5	0.455	INTERGENIC
2R	5692713	2R_5692713_DEL [dm3] 2R_9805208_DEL [dm6]	CCACGATTTGC...	C	4.059e^-5	0.455	INTRON CG1688
X	11670554	X_11670554_SNP [dm3] X_11776521_SNP [dm6]	C	A	4.075e^-5	0.455	INTRON dy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	19325546	X_19325546_SNP [dm3] X_19431513_SNP [dm6]	T	C	4.101e^-5	0.455	INTRON kek5	TF binding site BDTNP1_TFBS_da
2L	18251106	2L_18251106_SNP [dm3] 2L_18251106_SNP [dm6]	C	T	4.105e^-5	0.455	UPSTREAM CG43406 INTRON CG42750
2L	3485465	2L_3485465_SNP [dm3] 2L_3485465_SNP [dm6]	G	C	4.115e^-5	0.455	INTRON CG15414
2L	16848223	2L_16848223_SNP [dm3] 2L_16848223_SNP [dm6]	G	A	4.174e^-5	0.455	DOWNSTREAM CG31810 INTRON CG13284
2L	7005925	2L_7005925_SNP [dm3] 2L_7005925_SNP [dm6]	C	T	4.195e^-5	0.455	INTRON uif	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	9109158	2L_9109158_SNP [dm3] 2L_9109158_SNP [dm6]	A	G	4.255e^-5	0.455	INTERGENIC
2L	5924596	2L_5924596_SNP [dm3] 2L_5924596_SNP [dm6]	A	C	4.269e^-5	0.455	UPSTREAM CG9016 DOWNSTREAM CR43926 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11603514	3L_11603514_SNP [dm3] 3L_11610414_SNP [dm6]	A	G	4.317e^-5	0.455	UPSTREAM CG6091 DOWNSTREAM Muc68Ca & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11603586	3L_11603586_SNP [dm3] 3L_11610486_SNP [dm6]	A	T	4.317e^-5	0.455	DOWNSTREAM Muc68Ca & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3755284	2L_3755284_SNP [dm3] 2L_3755284_SNP [dm6]	A	T	4.321e^-5	0.455	DOWNSTREAM CG10019 INTERGENIC
2R	16922757	2R_16922757_SNP [dm3] 2R_21035252_SNP [dm6]	A	G	4.338e^-5	0.455	INTERGENIC
2L	16703240	2L_16703240_SNP [dm3] 2L_16703240_SNP [dm6]	C	T	4.340e^-5	0.455	UPSTREAM CR43670 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8986776	2L_8986776_SNP [dm3] 2L_8986776_SNP [dm6]	G	T	4.370e^-5	0.455	SYNONYMOUS_CODING rost
3L	9097028	3L_9097028_SNP [dm3] 3L_9103928_SNP [dm6]	T	C	4.395e^-5	0.455	INTRON bol
2L	3698249	2L_3698249_SNP [dm3] 2L_3698249_SNP [dm6]	T	C	4.428e^-5	0.455	UPSTREAM CG3604 DOWNSTREAM CG10031 INTERGENIC
2L	17805366	2L_17805366_SNP [dm3] 2L_17805366_SNP [dm6]	T	A	4.431e^-5	0.455	INTRON CadN2
3L	13915298	3L_13915298_SNP [dm3] 3L_13922198_SNP [dm6]	A	T	4.432e^-5	0.455	UTR_5_PRIME Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	22823783	3R_22823783_SNP [dm3] 3R_26998061_SNP [dm6]	C	A	4.449e^-5	0.455	INTRON RYa-R
3L	13720129	3L_13720129_INS [dm3] 3L_13727029_INS [dm6]	T	TT	4.582e^-5	0.463	INTRON bru-3
3L	14152582	3L_14152582_SNP [dm3] 3L_14159482_SNP [dm6]	T	G	4.588e^-5	0.463	INTERGENIC	regulatory region REDfly_CRMs
3L	3677565	3L_3677565_SNP [dm3] 3L_3677565_SNP [dm6]	T	C	4.605e^-5	0.463	INTERGENIC
2R	6396620	2R_6396620_SNP [dm3] 2R_10509115_SNP [dm6]	C	T	4.700e^-5	0.464	SYNONYMOUS_CODING lola INTRON lola	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16922752	2R_16922752_SNP [dm3] 2R_21035247_SNP [dm6]	G	A	4.701e^-5	0.464	INTERGENIC
2R	16922770	2R_16922770_SNP [dm3] 2R_21035265_SNP [dm6]	G	C	4.701e^-5	0.464	INTERGENIC
2L	19194436	2L_19194436_SNP [dm3] 2L_19194436_SNP [dm6]	A	G	4.774e^-5	0.464	INTRON drl	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	2817825	2L_2817825_SNP [dm3] 2L_2817825_SNP [dm6]	G	A	4.791e^-5	0.464	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6785727	2R_6785727_SNP [dm3] 2R_10898222_SNP [dm6]	G	A	4.797e^-5	0.464	UTR_3_PRIME Rpb5 UPSTREAM CG7712 DOWNSTREAM CG12942 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco
2R	6989450	2R_6989450_SNP [dm3] 2R_11101945_SNP [dm6]	A	G	4.805e^-5	0.464	INTRON luna	TF binding site mE1_TFBS_cad
2L	2817818	2L_2817818_SNP [dm3] 2L_2817818_SNP [dm6]	G	A	4.822e^-5	0.464	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12540665	3L_12540665_SNP [dm3] 3L_12547565_SNP [dm6]	T	C	4.837e^-5	0.464	INTRON sowah
X	19325545	X_19325545_SNP [dm3] X_19431512_SNP [dm6]	T	C	4.902e^-5	0.467	INTRON kek5	TF binding site BDTNP1_TFBS_da
X	4879512	X_4879512_SNP [dm3] X_4985479_SNP [dm6]	T	A	4.917e^-5	0.467	INTRON CR44833	regulatory region REDfly_CRMs
2L	19198305	2L_19198305_SNP [dm3] 2L_19198305_SNP [dm6]	G	C	5.011e^-5	0.469	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23535991	3R_23535991_SNP [dm3] 3R_27710269_SNP [dm6]	G	T	5.017e^-5	0.469	SPLICE_SITE_REGION CG12877 INTRON CG12877
3L	7950237	3L_7950237_SNP [dm3] 3L_7957137_SNP [dm6]	T	C	5.065e^-5	0.469	INTERGENIC
2L	7107505	2L_7107505_SNP [dm3] 2L_7107505_SNP [dm6]	C	G	5.083e^-5	0.469	NON_SYNONYMOUS_CODING Pvf3
2R	4656402	2R_4656402_SNP [dm3] 2R_8768897_SNP [dm6]	T	A	5.089e^-5	0.469	UPSTREAM CR44278 INTERGENIC
2R	7151366	2R_7151366_SNP [dm3] 2R_11263861_SNP [dm6]	T	A	5.091e^-5	0.469	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2L	5966446	2L_5966446_SNP [dm3] 2L_5966446_SNP [dm6]	G	T	5.123e^-5	0.469	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4325008	2L_4325008_SNP [dm3] 2L_4325008_SNP [dm6]	C	T	5.151e^-5	0.469	NON_SYNONYMOUS_CODING CG16857
3L	9200314	3L_9200314_SNP [dm3] 3L_9207214_SNP [dm6]	T	C	5.171e^-5	0.469	UPSTREAM Slc45-1 INTRON Slc45-1
3L	15706538	3L_15706538_SNP [dm3] 3L_15713438_SNP [dm6]	A	G	5.212e^-5	0.47	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14711005	2L_14711005_SNP [dm3] 2L_14711005_SNP [dm6]	A	C	5.241e^-5	0.47	INTERGENIC
X	17674658	X_17674658_SNP [dm3] X_17780625_SNP [dm6]	G	A	5.284e^-5	0.47	INTERGENIC
2L	6588752	2L_6588752_SNP [dm3] 2L_6588752_SNP [dm6]	T	G	5.302e^-5	0.47	INTRON CG11319
3L	4537533	3L_4537533_SNP [dm3] 3L_4537533_SNP [dm6]	T	C	5.319e^-5	0.47	SYNONYMOUS_CODING CG11353
3R	25992636	3R_25992636_SNP [dm3] 3R_30166914_SNP [dm6]	T	A	5.329e^-5	0.47	UPSTREAM CG31030 INTRON CG31028	TF binding site BDTNP1_TFBS_twi
2L	8638805	2L_8638805_INS [dm3] 2L_8638805_INS [dm6]	T	TT	5.412e^-5	0.474	INTRON Sema-1a	TF binding site mE1_TFBS_inv
2R	17720249	2R_17720249_SNP [dm3] 2R_21832744_SNP [dm6]	T	G	5.422e^-5	0.474	SYNONYMOUS_CODING CG34040	TF binding site mE1_TFBS_sens
3L	11545078	3L_11545078_SNP [dm3] 3L_11551978_SNP [dm6]	A	G	5.503e^-5	0.476	DOWNSTREAM mir-4968 INTRON Mob2	TF binding site BDTNP1_TFBS_dl
3R	23489938	3R_23489938_SNP [dm3] 3R_27664216_SNP [dm6]	G	A	5.557e^-5	0.476	INTRON unc80
2L	5163848	2L_5163848_SNP [dm3] 2L_5163848_SNP [dm6]	T	A	5.594e^-5	0.476	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_sens
2L	8986584	2L_8986584_SNP [dm3] 2L_8986584_SNP [dm6]	G	A	5.597e^-5	0.476	INTRON rost
3L	11410139	3L_11410139_SNP [dm3] 3L_11417039_SNP [dm6]	T	C	5.605e^-5	0.476	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	1996246	3L_1996246_SNP [dm3] 3L_1996246_SNP [dm6]	G	T	5.645e^-5	0.476	INTERGENIC
2R	8876324	2R_8876324_SNP [dm3] 2R_12988819_SNP [dm6]	A	T	5.704e^-5	0.476	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16929015	2R_16929015_SNP [dm3] 2R_21041510_SNP [dm6]	T	A	5.728e^-5	0.476	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3968828	2L_3968828_SNP [dm3] 2L_3968828_SNP [dm6]	A	G	5.780e^-5	0.476	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	5045451	3L_5045451_SNP [dm3] 3L_5045451_SNP [dm6]	T	G	5.782e^-5	0.476	INTRON Con
3R	22823862	3R_22823862_SNP [dm3] 3R_26998140_SNP [dm6]	G	T	5.819e^-5	0.476	INTRON RYa-R
3R	22495418	3R_22495418_SNP [dm3] 3R_26669696_SNP [dm6]	C	A	5.848e^-5	0.476	INTRON beat-VII
2R	17720245	2R_17720245_SNP [dm3] 2R_21832740_SNP [dm6]	A	T	5.891e^-5	0.476	NON_SYNONYMOUS_CODING CG34040	TF binding site mE1_TFBS_sens
3L	11543597	3L_11543597_SNP [dm3] 3L_11550497_SNP [dm6]	G	T	6.063e^-5	0.476	INTRON Mob2	TF binding site mE1_TFBS_Trl
3L	13713374	3L_13713374_SNP [dm3] 3L_13720274_SNP [dm6]	G	C	6.069e^-5	0.476	INTRON bru-3
3R	23280395	3R_23280395_SNP [dm3] 3R_27454673_SNP [dm6]	C	A	6.075e^-5	0.476	INTERGENIC
3L	3684884	3L_3684884_SNP [dm3] 3L_3684884_SNP [dm6]	A	T	6.157e^-5	0.476	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7124136	3L_7124136_SNP [dm3] 3L_7131036_SNP [dm6]	A	C	6.176e^-5	0.476	UPSTREAM Dbi INTRON CG8628
2R	13949839	2R_13949839_SNP [dm3] 2R_18062334_SNP [dm6]	A	G	6.220e^-5	0.476	UPSTREAM CG34386 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23612828	3R_23612828_SNP [dm3] 3R_27787106_SNP [dm6]	T	C	6.265e^-5	0.476	INTRON CG34353
3L	1996412	3L_1996412_SNP [dm3] 3L_1996412_SNP [dm6]	T	C	6.317e^-5	0.476	INTERGENIC
X	4715022	X_4715022_SNP [dm3] X_4820989_SNP [dm6]	G	C	6.319e^-5	0.476	INTERGENIC
2L	2821125	2L_2821125_SNP [dm3] 2L_2821125_SNP [dm6]	C	T	6.353e^-5	0.476	INTRON Duox	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	2821143	2L_2821143_SNP [dm3] 2L_2821143_SNP [dm6]	G	T	6.353e^-5	0.476	INTRON Duox	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	2821149	2L_2821149_SNP [dm3] 2L_2821149_SNP [dm6]	A	T	6.353e^-5	0.476	INTRON Duox	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	11153889	3L_11153889_SNP [dm3] 3L_11160789_SNP [dm6]	G	A	6.353e^-5	0.476	SYNONYMOUS_CODING CG32082
3L	11471372	3L_11471372_SNP [dm3] 3L_11478272_SNP [dm6]	C	A	6.353e^-5	0.476	INTERGENIC
3L	11544379	3L_11544379_SNP [dm3] 3L_11551279_SNP [dm6]	T	C	6.353e^-5	0.476	INTRON Mob2	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	11544770	3L_11544770_SNP [dm3] 3L_11551670_SNP [dm6]	G	C	6.353e^-5	0.476	DOWNSTREAM mir-4968 INTRON Mob2	TF binding site mE1_TFBS_HSA
3L	11547565	3L_11547565_SNP [dm3] 3L_11554465_SNP [dm6]	C	T	6.353e^-5	0.476	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	11547573	3L_11547573_SNP [dm3] 3L_11554473_SNP [dm6]	T	C	6.353e^-5	0.476	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	11547599	3L_11547599_SNP [dm3] 3L_11554499_SNP [dm6]	G	T	6.353e^-5	0.476	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	11548079	3L_11548079_SNP [dm3] 3L_11554979_SNP [dm6]	C	T	6.353e^-5	0.476	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	18334203	X_18334203_SNP [dm3] X_18440170_SNP [dm6]	C	A	6.385e^-5	0.476	DOWNSTREAM CG32551 & 1 other INTRON CG32548
2R	13949875	2R_13949875_SNP [dm3] 2R_18062370_SNP [dm6]	A	C	6.390e^-5	0.476	UPSTREAM CG34386 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11545473	3L_11545473_SNP [dm3] 3L_11552373_SNP [dm6]	G	T	6.399e^-5	0.476	DOWNSTREAM mir-4968 INTRON Mob2	TF binding site BDTNP1_TFBS_dl
2L	19190644	2L_19190644_SNP [dm3] 2L_19190644_SNP [dm6]	A	C	6.408e^-5	0.476	UTR_5_PRIME drl DOWNSTREAM pigeon	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	4656234	2R_4656234_SNP [dm3] 2R_8768729_SNP [dm6]	G	A	6.424e^-5	0.476	EXON CR44278
3L	12982206	3L_12982206_DEL [dm3] 3L_12989106_DEL [dm6]	TC	T	6.541e^-5	0.476	INTERGENIC
2L	9678607	2L_9678607_SNP [dm3] 2L_9678607_SNP [dm6]	G	A	6.587e^-5	0.476	INTERGENIC
3L	3701867	3L_3701867_SNP [dm3] 3L_3701867_SNP [dm6]	T	C	6.594e^-5	0.476	INTERGENIC
2L	4005901	2L_4005901_INS [dm3] 2L_4005901_INS [dm6]	A	AT	6.614e^-5	0.476	UPSTREAM CG15423 DOWNSTREAM CG15422 INTERGENIC
3R	23632694	3R_23632694_SNP [dm3] 3R_27806972_SNP [dm6]	G	A	6.643e^-5	0.476	INTRON CG34353
3L	5345357	3L_5345357_SNP [dm3] 3L_5352257_SNP [dm6]	T	C	6.664e^-5	0.476	UPSTREAM lama INTRON lama	TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2L	793120	2L_793120_SNP [dm3] 2L_793120_SNP [dm6]	G	C	6.694e^-5	0.476	INTERGENIC
2R	4655964	2R_4655964_SNP [dm3] 2R_8768459_SNP [dm6]	G	A	6.774e^-5	0.476	EXON CR44278
3R	3563642	3R_3563642_SNP [dm3] 3R_7737920_SNP [dm6]	T	A	6.796e^-5	0.476	INTERGENIC
2L	9718575	2L_9718575_SNP [dm3] 2L_9718575_SNP [dm6]	T	A	6.817e^-5	0.476	INTRON Nckx30C
2L	14710659	2L_14710659_SNP [dm3] 2L_14710659_SNP [dm6]	C	G	6.843e^-5	0.476	INTERGENIC
2L	16798221	2L_16798221_SNP [dm3] 2L_16798221_SNP [dm6]	T	G	6.873e^-5	0.476	NON_SYNONYMOUS_CODING Ugt36Bb UPSTREAM Ugt36Bc
2R	7192332	2R_7192332_SNP [dm3] 2R_11304827_SNP [dm6]	T	G	6.876e^-5	0.476	SYNONYMOUS_CODING CG7741 DOWNSTREAM Fpps	TF binding site mE1_TFBS_sens
2L	1308915	2L_1308915_SNP [dm3] 2L_1308915_SNP [dm6]	C	G	6.962e^-5	0.476	INTERGENIC
3R	4114271	3R_4114271_SNP [dm3] 3R_8288549_SNP [dm6]	T	A	6.996e^-5	0.476	UTR_3_PRIME CG11671 DOWNSTREAM CR44318 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7518631	3L_7518631_SNP [dm3] 3L_7525531_SNP [dm6]	C	T	7.048e^-5	0.476	INTRON ltl
2R	18341501	2R_18341501_SNP [dm3] 2R_22453996_SNP [dm6]	G	T	7.063e^-5	0.476	UPSTREAM CG10384 INTERGENIC
2R	17720210	2R_17720210_SNP [dm3] 2R_21832705_SNP [dm6]	C	A	7.068e^-5	0.476	SYNONYMOUS_CODING CG34040
2R	17720242	2R_17720242_SNP [dm3] 2R_21832737_SNP [dm6]	G	C	7.068e^-5	0.476	NON_SYNONYMOUS_CODING CG34040	TF binding site mE1_TFBS_sens
2R	17720247	2R_17720247_SNP [dm3] 2R_21832742_SNP [dm6]	T	C	7.068e^-5	0.476	NON_SYNONYMOUS_CODING CG34040	TF binding site mE1_TFBS_sens
3R	21362256	3R_21362256_DEL [dm3] 3R_25536534_DEL [dm6]	CG	T	7.086e^-5	0.476	INTRON msi
3L	7088758	3L_7088758_SNP [dm3] 3L_7095658_SNP [dm6]	A	T	7.113e^-5	0.476	INTRON form3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	14670050	X_14670050_SNP [dm3] X_14776017_SNP [dm6]	A	G	7.168e^-5	0.476	UTR_3_PRIME CG5334 UPSTREAM CG5347
2L	5163542	2L_5163542_SNP [dm3] 2L_5163542_SNP [dm6]	A	G	7.181e^-5	0.476	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	5163548	2L_5163548_SNP [dm3] 2L_5163548_SNP [dm6]	C	A	7.181e^-5	0.476	SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	7088843	3L_7088843_SNP [dm3] 3L_7095743_SNP [dm6]	C	T	7.213e^-5	0.476	INTRON form3	TF binding site BDTNP1_TFBS_da
3L	1996281	3L_1996281_SNP [dm3] 3L_1996281_SNP [dm6]	A	T	7.236e^-5	0.476	INTERGENIC
2R	4440665	2R_4440665_SNP [dm3] 2R_8553160_SNP [dm6]	A	G	7.251e^-5	0.476	UPSTREAM CG12780 INTERGENIC
2R	12060384	2R_12060384_SNP [dm3] 2R_16172879_SNP [dm6]	G	T	7.293e^-5	0.476	SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad
3L	11550017	3L_11550017_SNP [dm3] 3L_11556917_SNP [dm6]	C	T	7.334e^-5	0.476	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11231700	2L_11231700_SNP [dm3] 2L_11231700_SNP [dm6]	G	T	7.341e^-5	0.476	INTRON ab
2L	3450044	2L_3450044_SNP [dm3] 2L_3450044_SNP [dm6]	T	C	7.373e^-5	0.476	INTRON Snx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4442495	3L_4442495_SNP [dm3] 3L_4442495_SNP [dm6]	G	T	7.502e^-5	0.476	INTERGENIC
X	12029619	X_12029619_INS [dm3] X_12135586_INS [dm6]	T	TATCCTTATATATTTTTAT...	7.509e^-5	0.476	INTRON Ten-a
3L	11550985	3L_11550985_SNP [dm3] 3L_11557885_SNP [dm6]	A	G	7.509e^-5	0.476	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17720191	2R_17720191_SNP [dm3] 2R_21832686_SNP [dm6]	T	A	7.596e^-5	0.476	NON_SYNONYMOUS_CODING CG34040
2R	17720194	2R_17720194_SNP [dm3] 2R_21832689_SNP [dm6]	G	T	7.596e^-5	0.476	NON_SYNONYMOUS_CODING CG34040
3L	11547142	3L_11547142_SNP [dm3] 3L_11554042_SNP [dm6]	T	G	7.604e^-5	0.476	UPSTREAM Mob2 INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6001227	2L_6001227_SNP [dm3] 2L_6001227_SNP [dm6]	G	T	7.623e^-5	0.476	SYNONYMOUS_CODING Tsp26A INTRON Tsp26A	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	6761429	3L_6761429_SNP [dm3] 3L_6768329_SNP [dm6]	G	A	7.701e^-5	0.476	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18330981	2R_18330981_SNP [dm3] 2R_22443476_SNP [dm6]	T	G	7.781e^-5	0.476	INTERGENIC
3L	8237332	3L_8237332_SNP [dm3] 3L_8244232_SNP [dm6]	C	T	7.783e^-5	0.476	INTRON Dscam4
2R	12370458	2R_12370458_SNP [dm3] 2R_16482953_SNP [dm6]	G	T	7.813e^-5	0.476	INTERGENIC
2R	12370530	2R_12370530_SNP [dm3] 2R_16483025_SNP [dm6]	C	T	7.813e^-5	0.476	INTERGENIC
3L	11601470	3L_11601470_SNP [dm3] 3L_11608370_SNP [dm6]	C	T	7.841e^-5	0.476	UPSTREAM CG6091 INTRON CG6091	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15854613	2L_15854613_SNP [dm3] 2L_15854613_SNP [dm6]	C	G	7.854e^-5	0.476	NON_SYNONYMOUS_CODING Tektin-A DOWNSTREAM CG13243
2L	1553063	2L_1553063_SNP [dm3] 2L_1553063_SNP [dm6]	C	T	7.871e^-5	0.476	INTERGENIC
3L	5442635	3L_5442635_SNP [dm3] 3L_5449535_SNP [dm6]	G	A	7.884e^-5	0.476	INTERGENIC
3L	3684881	3L_3684881_DEL [dm3] 3L_3684881_DEL [dm6]	AA	A	7.899e^-5	0.476	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	974467	2L_974467_SNP [dm3] 2L_974467_SNP [dm6]	C	T	7.945e^-5	0.476	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	23612844	3R_23612844_SNP [dm3] 3R_27787122_SNP [dm6]	A	C	7.969e^-5	0.476	INTRON CG34353
3L	12543062	3L_12543062_SNP [dm3] 3L_12549962_SNP [dm6]	G	A	7.975e^-5	0.476	INTRON sowah
3L	12543081	3L_12543081_SNP [dm3] 3L_12549981_SNP [dm6]	A	T	7.975e^-5	0.476	INTRON sowah
2R	4071374	2R_4071374_SNP [dm3] 2R_8183869_SNP [dm6]	G	A	8.008e^-5	0.476	INTRON LRP1
2L	2825191	2L_2825191_SNP [dm3] 2L_2825191_SNP [dm6]	T	A	8.056e^-5	0.476	NON_SYNONYMOUS_CODING CG3123 INTRON Duox	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12541131	3L_12541131_SNP [dm3] 3L_12548031_SNP [dm6]	T	C	8.076e^-5	0.476	INTRON sowah
2L	11231694	2L_11231694_SNP [dm3] 2L_11231694_SNP [dm6]	T	C	8.087e^-5	0.476	INTRON ab
3L	7088729	3L_7088729_SNP [dm3] 3L_7095629_SNP [dm6]	G	T	8.092e^-5	0.476	INTRON form3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	7088732	3L_7088732_SNP [dm3] 3L_7095632_SNP [dm6]	A	C	8.092e^-5	0.476	INTRON form3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	5441436	2L_5441436_SNP [dm3] 2L_5441436_SNP [dm6]	C	A	8.096e^-5	0.476	INTERGENIC
X	3319877	X_3319877_SNP [dm3] X_3425844_SNP [dm6]	A	G	8.163e^-5	0.476	INTRON CR44999 & 1 other
3R	21362233	3R_21362233_SNP [dm3] 3R_25536511_SNP [dm6]	T	A	8.171e^-5	0.476	INTRON msi
3L	17167810	3L_17167810_SNP [dm3] 3L_17174710_SNP [dm6]	A	G	8.204e^-5	0.476	INTRON Rbp6
3L	17168134	3L_17168134_SNP [dm3] 3L_17175034_SNP [dm6]	G	T	8.204e^-5	0.476	INTRON Rbp6
3L	17171119	3L_17171119_SNP [dm3] 3L_17178019_SNP [dm6]	C	T	8.204e^-5	0.476	INTRON Rbp6
2L	15549579	2L_15549579_SNP [dm3] 2L_15549579_SNP [dm6]	G	A	8.214e^-5	0.476	UPSTREAM CR45728 & 1 other INTERGENIC
2R	8942214	2R_8942214_SNP [dm3] 2R_13054709_SNP [dm6]	C	A	8.225e^-5	0.476	DOWNSTREAM Drl-2 INTERGENIC
2L	5163669	2L_5163669_SNP [dm3] 2L_5163669_SNP [dm6]	A	G	8.264e^-5	0.476	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	7151369	2R_7151369_SNP [dm3] 2R_11263864_SNP [dm6]	T	G	8.292e^-5	0.476	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2L	5163535	2L_5163535_SNP [dm3] 2L_5163535_SNP [dm6]	A	G	8.294e^-5	0.476	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	1308175	2L_1308175_SNP [dm3] 2L_1308175_SNP [dm6]	C	T	8.309e^-5	0.476	INTERGENIC
2L	2825142	2L_2825142_SNP [dm3] 2L_2825142_SNP [dm6]	C	T	8.349e^-5	0.476	SYNONYMOUS_CODING CG3123 INTRON Duox	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2825386	2L_2825386_SNP [dm3] 2L_2825386_SNP [dm6]	G	A	8.349e^-5	0.476	NON_SYNONYMOUS_CODING CG3123 INTRON Duox
3L	7518652	3L_7518652_SNP [dm3] 3L_7525552_SNP [dm6]	T	G	8.411e^-5	0.476	SPLICE_SITE_REGION ltl INTRON ltl
2R	11979407	2R_11979407_SNP [dm3] 2R_16091902_SNP [dm6]	G	T	8.429e^-5	0.476	INTRON Dg
2L	1552962	2L_1552962_SNP [dm3] 2L_1552962_SNP [dm6]	G	A	8.438e^-5	0.476	INTERGENIC
X	11240620	X_11240620_SNP [dm3] X_11346587_SNP [dm6]	C	T	8.458e^-5	0.476	SYNONYMOUS_CODING CG1597	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23632023	3R_23632023_DEL [dm3] 3R_27806301_DEL [dm6]	GGTTTCCTGCGCTGCTG...	G	8.471e^-5	0.476	INTRON CG34353
2R	7565510	2R_7565510_SNP [dm3] 2R_11678005_SNP [dm6]	G	C	8.536e^-5	0.476	UTR_3_PRIME Tret1-2 INTRON Roc2
2L	913790	2L_913790_SNP [dm3] 2L_913790_SNP [dm6]	G	A	8.554e^-5	0.476	UPSTREAM GluRIIC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	10954249	2R_10954249_SNP [dm3] 2R_15066744_SNP [dm6]	G	C	8.572e^-5	0.476	INTERGENIC	TF binding site mE1_TFBS_cad
2L	13257354	2L_13257354_SNP [dm3] 2L_13257354_SNP [dm6]	T	C	8.601e^-5	0.476	UTR_3_PRIME CG31728 UPSTREAM CG31851	TF binding site mE1_TFBS_cad
2R	17537343	2R_17537343_SNP [dm3] 2R_21649838_SNP [dm6]	T	C	8.701e^-5	0.476	DOWNSTREAM CG30284 INTRON CG10082	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	7151349	2R_7151349_SNP [dm3] 2R_11263844_SNP [dm6]	T	A	8.708e^-5	0.476	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3L	2530552	3L_2530552_DEL [dm3] 3L_2530552_DEL [dm6]	ACA	A	8.723e^-5	0.476	INTRON Spn
2L	1553020	2L_1553020_SNP [dm3] 2L_1553020_SNP [dm6]	A	T	8.751e^-5	0.476	INTERGENIC
2R	9885125	2R_9885125_SNP [dm3] 2R_13997620_SNP [dm6]	G	A	8.780e^-5	0.476	INTRON mam	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	5628329	2L_5628329_SNP [dm3] 2L_5628329_SNP [dm6]	C	T	8.792e^-5	0.476	INTRON CG31646	TF binding site BDTNP1_TFBS_twi
2L	3968771	2L_3968771_SNP [dm3] 2L_3968771_SNP [dm6]	T	C	8.798e^-5	0.476	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3968782	2L_3968782_SNP [dm3] 2L_3968782_SNP [dm6]	C	T	8.798e^-5	0.476	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3968795	2L_3968795_SNP [dm3] 2L_3968795_SNP [dm6]	C	T	8.798e^-5	0.476	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	11551546	3L_11551546_SNP [dm3] 3L_11558446_SNP [dm6]	C	T	8.799e^-5	0.476	NON_SYNONYMOUS_CODING Mob2 INTRON Mob2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17720189	2R_17720189_SNP [dm3] 2R_21832684_SNP [dm6]	G	T	8.846e^-5	0.476	SYNONYMOUS_CODING CG34040
3L	7520509	3L_7520509_SNP [dm3] 3L_7527409_SNP [dm6]	C	T	8.870e^-5	0.476	UTR_3_PRIME ltl
2L	3968711	2L_3968711_SNP [dm3] 2L_3968711_SNP [dm6]	T	C	8.877e^-5	0.476	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3968723	2L_3968723_SNP [dm3] 2L_3968723_SNP [dm6]	T	A	8.877e^-5	0.476	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	17538406	2R_17538406_SNP [dm3] 2R_21650901_SNP [dm6]	A	G	8.988e^-5	0.478	SYNONYMOUS_CODING CG30284 INTRON CG10082	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	9705980	X_9705980_DEL [dm3] X_9811947_DEL [dm6]	AAAGCGCGGAA...	A	9.005e^-5	0.478	UTR_5_PRIME CG32698
3R	22897850	3R_22897850_SNP [dm3] 3R_27072128_SNP [dm6]	G	T	9.020e^-5	0.478	INTERGENIC
3L	17166870	3L_17166870_SNP [dm3] 3L_17173770_SNP [dm6]	T	A	9.091e^-5	0.478	INTRON Rbp6
3L	17166952	3L_17166952_INS [dm3] 3L_17173852_INS [dm6]	C	ACA	9.091e^-5	0.478	INTRON Rbp6
3L	8759310	3L_8759310_SNP [dm3] 3L_8766210_SNP [dm6]	A	C	9.095e^-5	0.478	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	1552994	2L_1552994_SNP [dm3] 2L_1552994_SNP [dm6]	T	A	9.140e^-5	0.478	INTERGENIC
X	7238004	X_7238004_SNP [dm3] X_7343971_SNP [dm6]	C	T	9.147e^-5	0.478	INTRON CR44357 & 1 other
3L	3145740	3L_3145740_SNP [dm3] 3L_3145740_SNP [dm6]	T	G	9.148e^-5	0.478	NON_SYNONYMOUS_CODING CG12082 DOWNSTREAM CG1291	TF binding site mE1_TFBS_chinmo
2R	9964053	2R_9964053_SNP [dm3] 2R_14076548_SNP [dm6]	G	A	9.198e^-5	0.479	INTRON Prosap
3L	4387862	3L_4387862_SNP [dm3] 3L_4387862_SNP [dm6]	A	G	9.315e^-5	0.484	INTRON slow
2R	3429784	2R_3429784_SNP [dm3] 2R_7542279_SNP [dm6]	T	A	9.388e^-5	0.484	INTRON Corin
3R	16843326	3R_16843326_DEL [dm3] 3R_21017604_DEL [dm6]	TT	T	9.388e^-5	0.484	UPSTREAM Rlip DOWNSTREAM CG5697 INTERGENIC	TF binding site mE1_TFBS_cad
3L	11420896	3L_11420896_INS [dm3] 3L_11427796_INS [dm6]	A	ATGT	9.399e^-5	0.484	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	12370631	2R_12370631_SNP [dm3] 2R_16483126_SNP [dm6]	G	A	9.562e^-5	0.489	INTERGENIC
3L	11613180	3L_11613180_SNP [dm3] 3L_11620080_SNP [dm6]	C	T	9.573e^-5	0.489	UTR_5_PRIME Muc68Ca DOWNSTREAM CG6084
3L	11613694	3L_11613694_SNP [dm3] 3L_11620594_SNP [dm6]	A	C	9.573e^-5	0.489	UTR_3_PRIME CG6084 UPSTREAM Muc68Ca
3L	5362071	3L_5362071_SNP [dm3] 3L_5368971_SNP [dm6]	T	G	9.656e^-5	0.491	UPSTREAM CG10635 & 1 other INTERGENIC
2L	7658219	2L_7658219_SNP [dm3] 2L_7658219_SNP [dm6]	C	G	9.694e^-5	0.491	INTRON Slob
3L	5053519	3L_5053519_SNP [dm3] 3L_5053519_SNP [dm6]	G	A	9.701e^-5	0.491	INTRON Con
3L	6964326	3L_6964326_SNP [dm3] 3L_6971226_SNP [dm6]	T	C	9.791e^-5	0.491	SYNONYMOUS_CODING CG9953 DOWNSTREAM CG10063	TF binding site mE1_TFBS_sens
2L	2824047	2L_2824047_SNP [dm3] 2L_2824047_SNP [dm6]	G	T	9.830e^-5	0.491	SYNONYMOUS_CODING CG3123 INTRON Duox	TF binding site mE1_TFBS_sens
2R	17420627	2R_17420627_SNP [dm3] 2R_21533122_SNP [dm6]	A	G	9.831e^-5	0.491	UPSTREAM CR44725 INTRON Egfr
2L	6595669	2L_6595669_SNP [dm3] 2L_6595669_SNP [dm6]	G	C	9.834e^-5	0.491	INTRON CG11319
2L	19194321	2L_19194321_SNP [dm3] 2L_19194321_SNP [dm6]	T	G	9.858e^-5	0.491	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9970134	2L_9970134_SNP [dm3] 2L_9970134_SNP [dm6]	C	G	9.868e^-5	0.491	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3946943	3L_3946943_SNP [dm3] 3L_3946943_SNP [dm6]	G	T	9.874e^-5	0.491	UTR_3_PRIME CG14982 UPSTREAM CG10853 DOWNSTREAM CG14982
2L	18136814	2L_18136814_SNP [dm3] 2L_18136814_SNP [dm6]	A	G	9.936e^-5	0.492	INTRON kel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12538082	3L_12538082_SNP [dm3] 3L_12544982_SNP [dm6]	G	A	1.002e^-4	0.492	INTRON sowah	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21208600	X_21208600_SNP [dm3] X_21337573_SNP [dm6]	T	A	1.006e^-4	0.492	INTRON tty	TF binding site BDTNP1_TFBS_dl
X	21208691	X_21208691_SNP [dm3] X_21337664_SNP [dm6]	C	A	1.006e^-4	0.492	INTRON tty	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	12593081	3L_12593081_SNP [dm3] 3L_12599981_SNP [dm6]	C	T	1.006e^-4	0.492	INTERGENIC
3L	12593185	3L_12593185_SNP [dm3] 3L_12600085_SNP [dm6]	T	G	1.006e^-4	0.492	INTERGENIC
X	17573888	X_17573888_SNP [dm3] X_17679855_SNP [dm6]	G	A	1.009e^-4	0.492	INTRON chas
2R	8942200	2R_8942200_SNP [dm3] 2R_13054695_SNP [dm6]	T	A	1.014e^-4	0.492	DOWNSTREAM Drl-2 INTERGENIC
3R	11180810	3R_11180810_SNP [dm3] 3R_15355088_SNP [dm6]	C	T	1.015e^-4	0.492	NON_SYNONYMOUS_CODING Atg4b
2L	9718583	2L_9718583_SNP [dm3] 2L_9718583_SNP [dm6]	C	T	1.023e^-4	0.492	INTRON Nckx30C
3L	11053319	3L_11053319_SNP [dm3] 3L_11060219_SNP [dm6]	A	G	1.023e^-4	0.492	SYNONYMOUS_CODING CG6321 DOWNSTREAM CG7888
2L	3449471	2L_3449471_SNP [dm3] 2L_3449471_SNP [dm6]	T	C	1.023e^-4	0.492	UPSTREAM Snx1 INTERGENIC
2L	2819286	2L_2819286_SNP [dm3] 2L_2819286_SNP [dm6]	G	C	1.030e^-4	0.492	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8991860	3L_8991860_SNP [dm3] 3L_8998760_SNP [dm6]	C	T	1.031e^-4	0.492	NON_SYNONYMOUS_CODING CG5087 UPSTREAM smg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	8991862	3L_8991862_SNP [dm3] 3L_8998762_SNP [dm6]	C	T	1.031e^-4	0.492	SYNONYMOUS_CODING CG5087 UPSTREAM smg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	12029602	X_12029602_SNP [dm3] X_12135569_SNP [dm6]	T	A	1.034e^-4	0.492	INTRON Ten-a
3L	677600	3L_677600_SNP [dm3] 3L_677600_SNP [dm6]	A	G	1.039e^-4	0.492	DOWNSTREAM CG17129 INTERGENIC
2R	5679055	2R_5679055_SNP [dm3] 2R_9791550_SNP [dm6]	G	C	1.039e^-4	0.492	DOWNSTREAM CR44208 INTRON CG1688
3L	2419736	3L_2419736_SNP [dm3] 3L_2419736_SNP [dm6]	A	G	1.040e^-4	0.492	INTRON CG45186
3L	9209385	3L_9209385_SNP [dm3] 3L_9216285_SNP [dm6]	C	G	1.043e^-4	0.492	INTERGENIC
3L	5062617	3L_5062617_SNP [dm3] 3L_5062617_SNP [dm6]	C	A	1.044e^-4	0.492	INTRON Con
2R	11031406	2R_11031406_SNP [dm3] 2R_15143901_SNP [dm6]	T	A	1.049e^-4	0.493	UTR_3_PRIME chn DOWNSTREAM chn
3L	13713758	3L_13713758_SNP [dm3] 3L_13720658_SNP [dm6]	T	G	1.055e^-4	0.494	INTRON bru-3
3L	8655048	3L_8655048_SNP [dm3] 3L_8661948_SNP [dm6]	C	T	1.063e^-4	0.497	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
X	17573881	X_17573881_SNP [dm3] X_17679848_SNP [dm6]	A	G	1.067e^-4	0.498	INTRON chas
3L	5528758	3L_5528758_SNP [dm3] 3L_5535658_SNP [dm6]	A	T	1.081e^-4	0.501	UTR_5_PRIME CG13285
3L	5528767	3L_5528767_SNP [dm3] 3L_5535667_SNP [dm6]	A	G	1.081e^-4	0.501	UTR_5_PRIME CG13285
3L	11625214	3L_11625214_SNP [dm3] 3L_11632114_SNP [dm6]	T	G	1.087e^-4	0.501	DOWNSTREAM CR45158 INTRON CG32091
2L	12451441	2L_12451441_SNP [dm3] 2L_12451441_SNP [dm6]	A	C	1.088e^-4	0.501	SYNONYMOUS_CODING Oatp33Eb DOWNSTREAM CG5418	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13650102	3R_13650102_SNP [dm3] 3R_17824380_SNP [dm6]	A	T	1.088e^-4	0.501	INTRON tinc
2L	3450351	2L_3450351_SNP [dm3] 2L_3450351_SNP [dm6]	C	T	1.099e^-4	0.505	SPLICE_SITE_REGION Snx1 INTRON Snx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22823725	3R_22823725_SNP [dm3] 3R_26998003_SNP [dm6]	C	T	1.102e^-4	0.505	INTRON RYa-R
2R	9262078	2R_9262078_SNP [dm3] 2R_13374573_SNP [dm6]	C	A	1.107e^-4	0.506	INTERGENIC
3L	8866058	3L_8866058_INS [dm3] 3L_8872958_INS [dm6]	C	CATA	1.113e^-4	0.506	INTRON dally
3L	8866061	3L_8866061_SNP [dm3] 3L_8872961_SNP [dm6]	G	T	1.113e^-4	0.506	INTRON dally
2R	9809314	2R_9809314_SNP [dm3] 2R_13921809_SNP [dm6]	G	A	1.116e^-4	0.507	SYNONYMOUS_CODING shot INTRON shot
3L	14772867	3L_14772867_SNP [dm3] 3L_14779767_SNP [dm6]	A	G	1.120e^-4	0.507	INTRON bmm
2L	15367726	2L_15367726_SNP [dm3] 2L_15367726_SNP [dm6]	A	T	1.127e^-4	0.508	INTERGENIC
2L	15367855	2L_15367855_DEL [dm3] 2L_15367855_DEL [dm6]	CT	A	1.127e^-4	0.508	INTERGENIC
3L	12540677	3L_12540677_SNP [dm3] 3L_12547577_SNP [dm6]	T	A	1.143e^-4	0.513	INTRON sowah
3L	7133096	3L_7133096_SNP [dm3] 3L_7139996_SNP [dm6]	G	T	1.148e^-4	0.513	SYNONYMOUS_CODING melt	TF binding site mE1_TFBS_chinmo
3L	3698572	3L_3698572_SNP [dm3] 3L_3698572_SNP [dm6]	T	C	1.150e^-4	0.513	INTERGENIC
3L	1441191	3L_1441191_SNP [dm3] 3L_1441191_SNP [dm6]	A	G	1.151e^-4	0.513	INTRON Ptp61F
2R	4152912	2R_4152912_SNP [dm3] 2R_8265407_SNP [dm6]	G	A	1.152e^-4	0.513	UPSTREAM CG30376 DOWNSTREAM CG30375 INTERGENIC
2L	1958840	2L_1958840_SNP [dm3] 2L_1958840_SNP [dm6]	G	A	1.156e^-4	0.513	INTRON erm	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10948661	2R_10948661_SNP [dm3] 2R_15061156_SNP [dm6]	T	C	1.162e^-4	0.515	INTERGENIC
3R	7286328	3R_7286328_SNP [dm3] 3R_11460606_SNP [dm6]	G	A	1.168e^-4	0.515	UPSTREAM PGRP-LB INTRON CG17230
2L	2822201	2L_2822201_SNP [dm3] 2L_2822201_SNP [dm6]	G	A	1.168e^-4	0.515	INTRON Duox
3L	11058008	3L_11058008_SNP [dm3] 3L_11064908_SNP [dm6]	G	T	1.171e^-4	0.515	UTR_5_PRIME CG32075 UPSTREAM SuUR & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	4726316	2L_4726316_INS [dm3] 2L_4726316_INS [dm6]	G	GG	1.175e^-4	0.515	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	11961682	2L_11961682_SNP [dm3] 2L_11961682_SNP [dm6]	G	A	1.188e^-4	0.52	INTRON CR43314 EXON CR43314
2R	9882689	2R_9882689_SNP [dm3] 2R_13995184_SNP [dm6]	C	T	1.193e^-4	0.521	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	4314192	2L_4314192_DEL [dm3] 2L_4314192_DEL [dm6]	AA	A	1.207e^-4	0.526	INTRON tutl
2L	1990294	2L_1990294_SNP [dm3] 2L_1990294_SNP [dm6]	A	G	1.213e^-4	0.527	EXON CR42874
3L	622705	3L_622705_SNP [dm3] 3L_622705_SNP [dm6]	G	A	1.217e^-4	0.528	UPSTREAM CG43337 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2R	20001945	2R_20001945_DEL [dm3] 2R_24114422_DEL [dm6]	TGAATTT	T	1.226e^-4	0.53	UTR_5_PRIME CG3253 UPSTREAM CG3253 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
2R	16952220	2R_16952220_SNP [dm3] 2R_21064715_SNP [dm6]	T	C	1.231e^-4	0.53	DOWNSTREAM Cht4 INTRON Cht12
2R	16952226	2R_16952226_SNP [dm3] 2R_21064721_SNP [dm6]	T	A	1.231e^-4	0.53	DOWNSTREAM Cht4 INTRON Cht12
2R	12511128	2R_12511128_SNP [dm3] 2R_16623623_SNP [dm6]	C	A	1.242e^-4	0.534	UTR_3_PRIME CG5065
3L	8998802	3L_8998802_SNP [dm3] 3L_9005702_SNP [dm6]	T	C	1.247e^-4	0.535	INTRON Doc3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7103399	3R_7103399_SNP [dm3] 3R_11277677_SNP [dm6]	C	G	1.254e^-4	0.536	EXON CR31386
2R	11899369	2R_11899369_INS [dm3] 2R_16011864_INS [dm6]	C	CC	1.258e^-4	0.537	UPSTREAM CG8388 INTRON CG8389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8196316	2L_8196316_SNP [dm3] 2L_8196316_SNP [dm6]	C	G	1.265e^-4	0.538	SYNONYMOUS_CODING CG8475 UPSTREAM CG8460 EXON CR44116	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8323053	2L_8323053_SNP [dm3] 2L_8323053_SNP [dm6]	C	T	1.268e^-4	0.538	INTRON CG7781	TF binding site mE1_TFBS_cad
3L	5359430	3L_5359430_SNP [dm3] 3L_5366330_SNP [dm6]	A	G	1.268e^-4	0.538	UPSTREAM Membrin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	13544963	2R_13544963_SNP [dm3] 2R_17657458_SNP [dm6]	C	T	1.290e^-4	0.543	INTRON CCHa1-R	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	9097183	3L_9097183_SNP [dm3] 3L_9104083_SNP [dm6]	T	C	1.291e^-4	0.543	INTRON bol
3L	8759291	3L_8759291_SNP [dm3] 3L_8766191_SNP [dm6]	A	T	1.291e^-4	0.543	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	7917380	3R_7917380_SNP [dm3] 3R_12091658_SNP [dm6]	A	G	1.292e^-4	0.543	INTERGENIC
X	6745603	X_6745603_SNP [dm3] X_6851570_SNP [dm6]	A	G	1.296e^-4	0.543	UTR_3_PRIME CG4558 DOWNSTREAM CG14434
2L	4726312	2L_4726312_SNP [dm3] 2L_4726312_SNP [dm6]	G	T	1.300e^-4	0.543	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	2532902	3L_2532902_SNP [dm3] 3L_2532902_SNP [dm6]	T	G	1.301e^-4	0.543	INTRON Spn
2R	7151383	2R_7151383_SNP [dm3] 2R_11263878_SNP [dm6]	T	A	1.304e^-4	0.543	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3L	7133153	3L_7133153_SNP [dm3] 3L_7140053_SNP [dm6]	C	T	1.308e^-4	0.543	SYNONYMOUS_CODING melt	TF binding site mE1_TFBS_chinmo
3L	7093566	3L_7093566_SNP [dm3] 3L_7100466_SNP [dm6]	G	A	1.316e^-4	0.545	INTRON form3
2L	16011665	2L_16011665_SNP [dm3] 2L_16011665_SNP [dm6]	C	G	1.325e^-4	0.548	INTRON beat-Ic
3L	643771	3L_643771_SNP [dm3] 3L_643771_SNP [dm6]	C	T	1.329e^-4	0.548	EXON CR43334	TF binding site mE1_TFBS_Trl
2L	3448626	2L_3448626_SNP [dm3] 2L_3448626_SNP [dm6]	G	C	1.333e^-4	0.549	INTERGENIC
2L	5082101	2L_5082101_SNP [dm3] 2L_5082101_SNP [dm6]	A	G	1.337e^-4	0.549	INTRON pgant5
3L	5528754	3L_5528754_SNP [dm3] 3L_5535654_SNP [dm6]	C	A	1.349e^-4	0.549	NON_SYNONYMOUS_CODING CG13285
3R	16831881	3R_16831881_SNP [dm3] 3R_21006159_SNP [dm6]	T	A	1.349e^-4	0.549	SYNONYMOUS_CODING CG10827 INTRON Calx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7151356	2R_7151356_SNP [dm3] 2R_11263851_SNP [dm6]	C	A	1.351e^-4	0.549	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2R	7151358	2R_7151358_MNP [dm3] 2R_11263853_MNP [dm6]	GCA	TAG	1.351e^-4	0.549	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3L	8035182	3L_8035182_SNP [dm3] 3L_8042082_SNP [dm6]	A	G	1.352e^-4	0.549	INTRON nmo
3L	3612112	3L_3612112_SNP [dm3] 3L_3612112_SNP [dm6]	A	G	1.358e^-4	0.551	UPSTREAM CG10359 INTERGENIC
3L	3167947	3L_3167947_SNP [dm3] 3L_3167947_SNP [dm6]	C	T	1.363e^-4	0.551	UTR_5_PRIME CG32280
2L	15033856	2L_15033856_SNP [dm3] 2L_15033856_SNP [dm6]	T	C	1.364e^-4	0.551	UTR_3_PRIME GABA-B-R1
2L	15548897	2L_15548897_SNP [dm3] 2L_15548897_SNP [dm6]	C	A	1.373e^-4	0.553	UPSTREAM CR45728 DOWNSTREAM Skadu INTERGENIC
2L	3968814	2L_3968814_SNP [dm3] 2L_3968814_SNP [dm6]	G	T	1.379e^-4	0.554	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	11899338	2R_11899338_SNP [dm3] 2R_16011833_SNP [dm6]	C	T	1.381e^-4	0.554	UTR_5_PRIME CG8389 UPSTREAM CG8388 INTRON CG8389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Ubx
2L	19193080	2L_19193080_SNP [dm3] 2L_19193080_SNP [dm6]	G	A	1.386e^-4	0.554	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9249045	2R_9249045_SNP [dm3] 2R_13361540_SNP [dm6]	A	T	1.387e^-4	0.554	DOWNSTREAM CR45312 INTERGENIC
X	2563943	X_2563943_SNP [dm3] X_2669910_SNP [dm6]	C	T	1.392e^-4	0.554	SPLICE_SITE_REGION sgg INTRON sgg
2L	6233380	2L_6233380_SNP [dm3] 2L_6233380_SNP [dm6]	C	G	1.393e^-4	0.554	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	9263260	2R_9263260_SNP [dm3] 2R_13375755_SNP [dm6]	A	G	1.397e^-4	0.554	DOWNSTREAM CG10814 INTERGENIC
3L	17172116	3L_17172116_SNP [dm3] 3L_17179016_SNP [dm6]	T	C	1.404e^-4	0.556	INTRON Rbp6
3L	12597273	3L_12597273_SNP [dm3] 3L_12604173_SNP [dm6]	G	A	1.408e^-4	0.556	INTERGENIC
2L	15505122	2L_15505122_SNP [dm3] 2L_15505122_SNP [dm6]	C	T	1.412e^-4	0.556	DOWNSTREAM lace INTERGENIC
2L	974632	2L_974632_SNP [dm3] 2L_974632_SNP [dm6]	G	T	1.420e^-4	0.558	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	9890614	3R_9890614_SNP [dm3] 3R_14064892_SNP [dm6]	G	T	1.424e^-4	0.559	INTRON foxo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5051023	3L_5051023_SNP [dm3] 3L_5051023_SNP [dm6]	C	T	1.429e^-4	0.56	INTRON Con EXON CR43884
3L	5044776	3L_5044776_SNP [dm3] 3L_5044776_SNP [dm6]	C	T	1.441e^-4	0.56	INTRON Con
3L	5044777	3L_5044777_SNP [dm3] 3L_5044777_SNP [dm6]	T	C	1.441e^-4	0.56	INTRON Con
3L	12720398	3L_12720398_SNP [dm3] 3L_12727298_SNP [dm6]	T	C	1.444e^-4	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3104577	2L_3104577_SNP [dm3] 2L_3104577_SNP [dm6]	G	T	1.445e^-4	0.56	INTRON toc	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9249027	2R_9249027_SNP [dm3] 2R_13361522_SNP [dm6]	G	C	1.448e^-4	0.56	DOWNSTREAM CR45312 INTERGENIC
X	4869735	X_4869735_SNP [dm3] X_4975702_SNP [dm6]	G	A	1.452e^-4	0.56	INTRON CR44833
2R	9248866	2R_9248866_SNP [dm3] 2R_13361361_SNP [dm6]	T	A	1.454e^-4	0.56	DOWNSTREAM CR45312 INTERGENIC
2L	14253818	2L_14253818_SNP [dm3] 2L_14253818_SNP [dm6]	G	A	1.456e^-4	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16306356	2L_16306356_SNP [dm3] 2L_16306356_SNP [dm6]	A	C	1.459e^-4	0.56	UPSTREAM Syx5 DOWNSTREAM c_2_M INTRON CG5861
3L	5360857	3L_5360857_SNP [dm3] 3L_5367757_SNP [dm6]	G	A	1.464e^-4	0.56	SYNONYMOUS_CODING CG10635 DOWNSTREAM Membrin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	12539487	3L_12539487_SNP [dm3] 3L_12546387_SNP [dm6]	C	A	1.466e^-4	0.56	INTRON sowah
3L	3586639	3L_3586639_SNP [dm3] 3L_3586639_SNP [dm6]	G	A	1.469e^-4	0.56	INTRON Eip63E
3L	17166910	3L_17166910_SNP [dm3] 3L_17173810_SNP [dm6]	G	A	1.471e^-4	0.56	INTRON Rbp6
X	12029783	X_12029783_SNP [dm3] X_12135750_SNP [dm6]	G	T	1.473e^-4	0.56	INTRON Ten-a
3R	22823914	3R_22823914_SNP [dm3] 3R_26998192_SNP [dm6]	T	A	1.478e^-4	0.561	INTRON RYa-R
3R	18175136	3R_18175136_SNP [dm3] 3R_22349414_SNP [dm6]	T	A	1.486e^-4	0.562	INTERGENIC
X	6402668	X_6402668_SNP [dm3] X_6508635_SNP [dm6]	T	G	1.487e^-4	0.562	INTRON CG42340
3L	8655020	3L_8655020_SNP [dm3] 3L_8661920_SNP [dm6]	G	T	1.492e^-4	0.562	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3L	5059629	3L_5059629_SNP [dm3] 3L_5059629_SNP [dm6]	T	A	1.493e^-4	0.562	INTRON Con
2R	18972329	2R_18972329_SNP [dm3] 2R_23084806_SNP [dm6]	T	A	1.505e^-4	0.566	INTERGENIC	TF binding site mE1_TFBS_cad
3L	7133606	3L_7133606_SNP [dm3] 3L_7140506_SNP [dm6]	G	A	1.510e^-4	0.566	SPLICE_SITE_REGION melt INTRON melt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15154985	2L_15154985_SNP [dm3] 2L_15154985_SNP [dm6]	G	T	1.511e^-4	0.566	INTERGENIC
3L	7130344	3L_7130344_SNP [dm3] 3L_7137244_SNP [dm6]	T	C	1.516e^-4	0.566	INTRON melt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2L	1651910	2L_1651910_SNP [dm3] 2L_1651910_SNP [dm6]	T	A	1.519e^-4	0.566	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6731679	2R_6731679_SNP [dm3] 2R_10844174_SNP [dm6]	C	T	1.522e^-4	0.566	UPSTREAM CG30015 INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	7074959	3L_7074959_SNP [dm3] 3L_7081859_SNP [dm6]	A	C	1.523e^-4	0.566	INTERGENIC
2L	3366616	2L_3366616_SNP [dm3] 2L_3366616_SNP [dm6]	T	G	1.532e^-4	0.566	INTRON CG34394
2L	17805293	2L_17805293_SNP [dm3] 2L_17805293_SNP [dm6]	A	T	1.534e^-4	0.566	INTRON CadN2
2L	17805316	2L_17805316_SNP [dm3] 2L_17805316_SNP [dm6]	T	A	1.534e^-4	0.566	INTRON CadN2
2R	17263977	2R_17263977_SNP [dm3] 2R_21376472_SNP [dm6]	C	T	1.553e^-4	0.569	INTRON cv-2
2R	5693538	2R_5693538_SNP [dm3] 2R_9806033_SNP [dm6]	C	G	1.561e^-4	0.569	INTRON CG1688
3L	8399533	3L_8399533_SNP [dm3] 3L_8406433_SNP [dm6]	G	C	1.567e^-4	0.569	NON_SYNONYMOUS_CODING CG13667 DOWNSTREAM Oseg1	TF binding site mE1_TFBS_sens
2L	3950227	2L_3950227_SNP [dm3] 2L_3950227_SNP [dm6]	A	T	1.568e^-4	0.569	INTRON fred
2R	14442213	2R_14442213_SNP [dm3] 2R_18554708_SNP [dm6]	C	T	1.569e^-4	0.569	SYNONYMOUS_CODING GEFmeso UTR_3_PRIME GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3319834	X_3319834_SNP [dm3] X_3425801_SNP [dm6]	G	T	1.570e^-4	0.569	INTRON CR44999 & 1 other
3L	2514404	3L_2514404_SNP [dm3] 3L_2514404_SNP [dm6]	A	G	1.578e^-4	0.569	INTRON Spn	TF binding site mE1_TFBS_sbb
X	10111951	X_10111951_SNP [dm3] X_10217918_SNP [dm6]	A	G	1.582e^-4	0.569	UTR_3_PRIME CG15308 UPSTREAM CR45629 DOWNSTREAM CG15308 & 1 other INTRON CR45629
2L	15835953	2L_15835953_SNP [dm3] 2L_15835953_SNP [dm6]	C	T	1.584e^-4	0.569	UPSTREAM CG18518 DOWNSTREAM CR31822 INTERGENIC
2L	15835967	2L_15835967_SNP [dm3] 2L_15835967_SNP [dm6]	A	C	1.584e^-4	0.569	UPSTREAM CG18518 DOWNSTREAM CR31822 INTERGENIC
3L	8191201	3L_8191201_SNP [dm3] 3L_8198101_SNP [dm6]	G	A	1.589e^-4	0.569	UPSTREAM CG8005 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2819780	2L_2819780_SNP [dm3] 2L_2819780_SNP [dm6]	G	T	1.589e^-4	0.569	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad
3R	23230650	3R_23230650_SNP [dm3] 3R_27404928_SNP [dm6]	G	C	1.590e^-4	0.569	INTRON side
3L	11599195	3L_11599195_SNP [dm3] 3L_11606095_SNP [dm6]	C	T	1.597e^-4	0.569	UTR_3_PRIME CG6091 DOWNSTREAM CG7368
3L	14635278	3L_14635278_SNP [dm3] 3L_14642178_SNP [dm6]	T	G	1.598e^-4	0.569	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1188530	3L_1188530_SNP [dm3] 3L_1188530_SNP [dm6]	G	C	1.606e^-4	0.569	INTERGENIC
2R	11867551	2R_11867551_SNP [dm3] 2R_15980046_SNP [dm6]	G	A	1.607e^-4	0.569	NON_SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_HSA
2L	8642349	2L_8642349_SNP [dm3] 2L_8642349_SNP [dm6]	G	A	1.623e^-4	0.569	INTRON Sema-1a
2R	7460727	2R_7460727_DEL [dm3] 2R_11573222_DEL [dm6]	CC	A	1.624e^-4	0.569	INTERGENIC
X	12029535	X_12029535_SNP [dm3] X_12135502_SNP [dm6]	T	G	1.625e^-4	0.569	INTRON Ten-a
X	12029581	X_12029581_SNP [dm3] X_12135548_SNP [dm6]	A	T	1.625e^-4	0.569	INTRON Ten-a
2L	3485581	2L_3485581_SNP [dm3] 2L_3485581_SNP [dm6]	C	T	1.628e^-4	0.569	INTRON CG15414
2L	3968736	2L_3968736_SNP [dm3] 2L_3968736_SNP [dm6]	C	A	1.635e^-4	0.569	INTRON fred	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	15835955	2L_15835955_SNP [dm3] 2L_15835955_SNP [dm6]	G	A	1.639e^-4	0.569	UPSTREAM CG18518 DOWNSTREAM CR31822 INTERGENIC
3R	25790740	3R_25790740_SNP [dm3] 3R_29965018_SNP [dm6]	G	A	1.644e^-4	0.569	INTRON TkR99D
3L	10686732	3L_10686732_SNP [dm3] 3L_10693632_SNP [dm6]	G	A	1.644e^-4	0.569	UPSTREAM CG33493 DOWNSTREAM NijA INTRON CG6463	TF binding site BDTNP1_TFBS_Med
2R	16923063	2R_16923063_SNP [dm3] 2R_21035558_SNP [dm6]	G	T	1.647e^-4	0.569	INTERGENIC
3L	8237336	3L_8237336_SNP [dm3] 3L_8244236_SNP [dm6]	G	A	1.649e^-4	0.569	INTRON Dscam4
2L	3378237	2L_3378237_SNP [dm3] 2L_3378237_SNP [dm6]	C	T	1.650e^-4	0.569	SYNONYMOUS_CODING Ptpa
2L	22245322	2L_22245322_SNP [dm3] 2L_22245322_SNP [dm6]	C	T	1.659e^-4	0.569	UTR_3_PRIME CG3262	transposable element FlyBase
2R	9263230	2R_9263230_SNP [dm3] 2R_13375725_SNP [dm6]	A	G	1.660e^-4	0.569	DOWNSTREAM CG10814 INTERGENIC
2R	9263242	2R_9263242_SNP [dm3] 2R_13375737_SNP [dm6]	T	C	1.660e^-4	0.569	DOWNSTREAM CG10814 INTERGENIC
2R	9263266	2R_9263266_SNP [dm3] 2R_13375761_SNP [dm6]	T	A	1.660e^-4	0.569	DOWNSTREAM CG10814 INTERGENIC
3L	1996266	3L_1996266_DEL [dm3] 3L_1996266_DEL [dm6]	CAGTAATTC	C	1.660e^-4	0.569	INTERGENIC
2R	12836198	2R_12836198_SNP [dm3] 2R_16948693_SNP [dm6]	C	T	1.661e^-4	0.569	UTR_3_PRIME mute UPSTREAM Vha16-4
X	6425441	X_6425441_SNP [dm3] X_6531408_SNP [dm6]	C	G	1.664e^-4	0.569	SYNONYMOUS_CODING RpL7A DOWNSTREAM snoRNA:Or-CD10 & 1 other	TF binding site BDTNP1_TFBS_sna
2L	17805277	2L_17805277_SNP [dm3] 2L_17805277_SNP [dm6]	A	T	1.665e^-4	0.569	INTRON CadN2
2L	16703234	2L_16703234_INS [dm3] 2L_16703234_INS [dm6]	A	AA	1.673e^-4	0.569	UPSTREAM CR43670 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6588857	2L_6588857_SNP [dm3] 2L_6588857_SNP [dm6]	C	T	1.674e^-4	0.569	INTRON CG11319
3L	7797414	3L_7797414_SNP [dm3] 3L_7804314_SNP [dm6]	G	T	1.674e^-4	0.569	NON_SYNONYMOUS_CODING CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2R	7151418	2R_7151418_SNP [dm3] 2R_11263913_SNP [dm6]	T	G	1.679e^-4	0.569	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2R	7151425	2R_7151425_SNP [dm3] 2R_11263920_SNP [dm6]	T	A	1.679e^-4	0.569	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3R	13504041	3R_13504041_DEL [dm3] 3R_17678319_DEL [dm6]	GG	G	1.681e^-4	0.569	INTRON alt	TF binding site mE1_TFBS_inv
3R	13649911	3R_13649911_SNP [dm3] 3R_17824189_SNP [dm6]	C	T	1.681e^-4	0.569	INTRON tinc
3L	11468193	3L_11468193_SNP [dm3] 3L_11475093_SNP [dm6]	G	A	1.683e^-4	0.569	SYNONYMOUS_CODING Vha16-2
3L	1190606	3L_1190606_SNP [dm3] 3L_1190606_SNP [dm6]	G	C	1.683e^-4	0.569	UTR_3_PRIME Trh DOWNSTREAM CG13912
3L	5050932	3L_5050932_SNP [dm3] 3L_5050932_SNP [dm6]	C	A	1.684e^-4	0.569	INTRON Con EXON CR43884
2L	2817159	2L_2817159_SNP [dm3] 2L_2817159_SNP [dm6]	C	G	1.694e^-4	0.569	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8551975	2L_8551975_SNP [dm3] 2L_8551975_SNP [dm6]	A	G	1.698e^-4	0.569	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi
2L	10116205	2L_10116205_SNP [dm3] 2L_10116205_SNP [dm6]	C	A	1.699e^-4	0.569	INTRON CG44153 & 1 other
3L	5044551	3L_5044551_SNP [dm3] 3L_5044551_SNP [dm6]	C	T	1.702e^-4	0.569	INTRON Con
3L	13147283	3L_13147283_SNP [dm3] 3L_13154183_SNP [dm6]	G	A	1.703e^-4	0.569	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3L	5769237	3L_5769237_SNP [dm3] 3L_5776137_SNP [dm6]	T	A	1.704e^-4	0.569	UTR_3_PRIME scny DOWNSTREAM vito & 1 other
3L	5051403	3L_5051403_SNP [dm3] 3L_5051403_SNP [dm6]	T	C	1.711e^-4	0.57	INTRON Con EXON CR43884
3R	18778187	3R_18778187_DEL [dm3] 3R_22952465_DEL [dm6]	GCA	G	1.713e^-4	0.57	INTRON klg
3L	5032241	3L_5032241_SNP [dm3] 3L_5032241_SNP [dm6]	T	G	1.720e^-4	0.572	INTRON Con
2L	3390081	2L_3390081_SNP [dm3] 2L_3390081_SNP [dm6]	C	G	1.723e^-4	0.572	DOWNSTREAM CR44791 INTERGENIC
3L	5442886	3L_5442886_SNP [dm3] 3L_5449786_SNP [dm6]	A	G	1.727e^-4	0.572	INTERGENIC
2L	9970166	2L_9970166_SNP [dm3] 2L_9970166_SNP [dm6]	T	A	1.731e^-4	0.572	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5163521	2L_5163521_SNP [dm3] 2L_5163521_SNP [dm6]	A	T	1.733e^-4	0.572	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	10663416	2R_10663416_DEL [dm3] 2R_14775911_DEL [dm6]	AA	G	1.742e^-4	0.573	INTRON kn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	21210982	X_21210982_SNP [dm3] X_21339955_SNP [dm6]	C	A	1.743e^-4	0.573	UPSTREAM tty INTRON fliI	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7088751	3L_7088751_SNP [dm3] 3L_7095651_SNP [dm6]	G	T	1.752e^-4	0.574	INTRON form3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	3327908	2L_3327908_SNP [dm3] 2L_3327908_SNP [dm6]	G	A	1.753e^-4	0.574	UTR_5_PRIME CG33282
3L	5238666	3L_5238666_SNP [dm3] 3L_5245566_SNP [dm6]	C	A	1.760e^-4	0.575	INTRON shep
3L	7061729	3L_7061729_SNP [dm3] 3L_7068629_SNP [dm6]	A	G	1.776e^-4	0.578	DOWNSTREAM CG14823 INTRON CG8641 & 1 other
3R	19481832	3R_19481832_SNP [dm3] 3R_23656110_SNP [dm6]	A	T	1.783e^-4	0.578	INTRON CG31145
3L	5050937	3L_5050937_SNP [dm3] 3L_5050937_SNP [dm6]	G	C	1.784e^-4	0.578	INTRON Con EXON CR43884
X	6794866	X_6794866_SNP [dm3] X_6900833_SNP [dm6]	G	T	1.785e^-4	0.578	INTERGENIC
2L	11230887	2L_11230887_SNP [dm3] 2L_11230887_SNP [dm6]	A	T	1.794e^-4	0.578	INTRON ab
3L	8866274	3L_8866274_SNP [dm3] 3L_8873174_SNP [dm6]	C	A	1.802e^-4	0.578	INTRON dally	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10965292	3L_10965292_SNP [dm3] 3L_10972192_SNP [dm6]	A	G	1.803e^-4	0.578	UPSTREAM CG14147 INTERGENIC
3R	13504521	3R_13504521_SNP [dm3] 3R_17678799_SNP [dm6]	G	T	1.823e^-4	0.578	UPSTREAM alt INTRON alt
X	315475	X_315475_DEL [dm3] X_421442_DEL [dm6]	AA	A	1.823e^-4	0.578	INTRON CG32816	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	21808012	3L_21808012_SNP [dm3] 3L_21814912_SNP [dm6]	T	G	1.828e^-4	0.578	UPSTREAM eg INTRON eg
2L	3950241	2L_3950241_SNP [dm3] 2L_3950241_SNP [dm6]	A	T	1.832e^-4	0.578	INTRON fred
3L	8427532	3L_8427532_SNP [dm3] 3L_8434432_SNP [dm6]	G	T	1.832e^-4	0.578	UTR_3_PRIME Unr
3L	12540699	3L_12540699_SNP [dm3] 3L_12547599_SNP [dm6]	C	A	1.834e^-4	0.578	INTRON sowah
2R	7151370	2R_7151370_SNP [dm3] 2R_11263865_SNP [dm6]	T	A	1.838e^-4	0.578	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2L	5989134	2L_5989134_SNP [dm3] 2L_5989134_SNP [dm6]	G	T	1.841e^-4	0.578	DOWNSTREAM lid & 1 other INTERGENIC
2L	2281017	2L_2281017_SNP [dm3] 2L_2281017_SNP [dm6]	A	T	1.842e^-4	0.578	INTERGENIC
2L	2281018	2L_2281018_SNP [dm3] 2L_2281018_SNP [dm6]	C	T	1.842e^-4	0.578	INTERGENIC
2L	3104469	2L_3104469_SNP [dm3] 2L_3104469_SNP [dm6]	C	A	1.847e^-4	0.578	INTRON toc	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25584201	3R_25584201_SNP [dm3] 3R_29758479_SNP [dm6]	C	T	1.849e^-4	0.578	INTRON CR44953
3L	12539492	3L_12539492_SNP [dm3] 3L_12546392_SNP [dm6]	C	T	1.852e^-4	0.578	INTRON sowah
3R	20904148	3R_20904148_SNP [dm3] 3R_25078426_SNP [dm6]	T	G	1.853e^-4	0.578	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	9263262	2R_9263262_SNP [dm3] 2R_13375757_SNP [dm6]	A	C	1.875e^-4	0.578	DOWNSTREAM CG10814 INTERGENIC
3L	7132479	3L_7132479_SNP [dm3] 3L_7139379_SNP [dm6]	C	T	1.878e^-4	0.578	SPLICE_SITE_REGION melt INTRON melt	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	2844909	2L_2844909_SNP [dm3] 2L_2844909_SNP [dm6]	A	C	1.878e^-4	0.578	NON_SYNONYMOUS_CODING CG18557 UPSTREAM CG18558	TF binding site mE1_TFBS_cad
3L	4161300	3L_4161300_INS [dm3] 3L_4161300_INS [dm6]	C	CTTGGGTGCC	1.881e^-4	0.578	UPSTREAM nab DOWNSTREAM mas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	13924255	3R_13924255_SNP [dm3] 3R_18098533_SNP [dm6]	G	A	1.888e^-4	0.578	INTRON sr
3L	11213396	3L_11213396_SNP [dm3] 3L_11220296_SNP [dm6]	G	A	1.889e^-4	0.578	INTRON CG42671	TF binding site mE1_TFBS_cad
2L	2612524	2L_2612524_SNP [dm3] 2L_2612524_SNP [dm6]	A	T	1.892e^-4	0.578	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8754753	3L_8754753_SNP [dm3] 3L_8761653_SNP [dm6]	T	C	1.893e^-4	0.578	SYNONYMOUS_CODING Fhos START_GAINED Fhos UTR_5_PRIME Fhos	TF binding site mE1_TFBS_inv
2R	16791325	2R_16791325_SNP [dm3] 2R_20903820_SNP [dm6]	C	T	1.900e^-4	0.578	UPSTREAM otp INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16793249	2R_16793249_SNP [dm3] 2R_20905744_SNP [dm6]	T	C	1.900e^-4	0.578	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16793430	2R_16793430_SNP [dm3] 2R_20905925_SNP [dm6]	A	G	1.900e^-4	0.578	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17825611	2R_17825611_SNP [dm3] 2R_21938106_SNP [dm6]	G	T	1.900e^-4	0.578	INTRON Fili
2R	17825629	2R_17825629_SNP [dm3] 2R_21938124_SNP [dm6]	G	C	1.900e^-4	0.578	INTRON Fili
2R	17825638	2R_17825638_SNP [dm3] 2R_21938133_SNP [dm6]	A	C	1.900e^-4	0.578	INTRON Fili
3R	23622350	3R_23622350_SNP [dm3] 3R_27796628_SNP [dm6]	G	T	1.900e^-4	0.578	INTRON CG34353
2R	19334538	2R_19334538_SNP [dm3] 2R_23447015_SNP [dm6]	G	T	1.901e^-4	0.578	INTRON CG43795
3L	7132765	3L_7132765_SNP [dm3] 3L_7139665_SNP [dm6]	T	A	1.901e^-4	0.578	INTRON melt
3L	15211000	3L_15211000_SNP [dm3] 3L_15217900_SNP [dm6]	T	C	1.903e^-4	0.578	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	2725645	3R_2725645_SNP [dm3] 3R_6899923_SNP [dm6]	C	T	1.904e^-4	0.578	INTRON Antp
3L	5362147	3L_5362147_SNP [dm3] 3L_5369047_SNP [dm6]	A	T	1.913e^-4	0.578	UPSTREAM CR44515 INTERGENIC
3L	5362152	3L_5362152_SNP [dm3] 3L_5369052_SNP [dm6]	G	C	1.913e^-4	0.578	UPSTREAM CR44515 INTERGENIC
2R	5327018	2R_5327018_SNP [dm3] 2R_9439513_SNP [dm6]	C	T	1.916e^-4	0.578	INTRON ced-6	TF binding site mE1_TFBS_cad
2L	15549105	2L_15549105_SNP [dm3] 2L_15549105_SNP [dm6]	A	T	1.918e^-4	0.578	UPSTREAM CR45728 DOWNSTREAM Skadu INTERGENIC
3L	2100429	3L_2100429_SNP [dm3] 3L_2100429_SNP [dm6]	T	G	1.919e^-4	0.578	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19370330	2R_19370330_SNP [dm3] 2R_23482807_SNP [dm6]	T	C	1.919e^-4	0.578	INTRON CG43795
2L	18342630	2L_18342630_SNP [dm3] 2L_18342630_SNP [dm6]	T	C	1.924e^-4	0.578	INTRON Fas3
2R	7151405	2R_7151405_INS [dm3] 2R_11263900_INS [dm6]	A	AA	1.925e^-4	0.578	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2L	3391102	2L_3391102_SNP [dm3] 2L_3391102_SNP [dm6]	C	T	1.928e^-4	0.578	INTERGENIC
3R	7392731	3R_7392731_SNP [dm3] 3R_11567009_SNP [dm6]	T	C	1.929e^-4	0.578	UTR_5_PRIME sea & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13131469	2R_13131469_SNP [dm3] 2R_17243964_SNP [dm6]	C	A	1.929e^-4	0.578	INTRON mbl	TF binding site mE1_TFBS_inv
3R	20782568	3R_20782568_SNP [dm3] 3R_24956846_SNP [dm6]	G	A	1.931e^-4	0.578	INTERGENIC
3L	8440379	3L_8440379_SNP [dm3] 3L_8447279_SNP [dm6]	T	G	1.948e^-4	0.581	INTRON CG6983
X	12029600	X_12029600_SNP [dm3] X_12135567_SNP [dm6]	A	G	1.949e^-4	0.581	INTRON Ten-a
2R	4656325	2R_4656325_SNP [dm3] 2R_8768820_SNP [dm6]	G	C	1.952e^-4	0.581	UPSTREAM CR44278 INTERGENIC
X	13321820	X_13321820_SNP [dm3] X_13427787_SNP [dm6]	G	T	1.953e^-4	0.581	INTERGENIC	TF binding site mE1_TFBS_inv
3L	12541711	3L_12541711_SNP [dm3] 3L_12548611_SNP [dm6]	G	A	1.955e^-4	0.581	INTRON sowah
3R	25638854	3R_25638854_SNP [dm3] 3R_29813132_SNP [dm6]	G	A	1.960e^-4	0.581	SYNONYMOUS_CODING ca	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	25638866	3R_25638866_SNP [dm3] 3R_29813144_SNP [dm6]	C	G	1.960e^-4	0.581	SYNONYMOUS_CODING ca	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	6794853	X_6794853_SNP [dm3] X_6900820_SNP [dm6]	C	T	1.967e^-4	0.581	INTERGENIC
X	6794854	X_6794854_SNP [dm3] X_6900821_SNP [dm6]	T	A	1.967e^-4	0.581	INTERGENIC
X	12029530	X_12029530_SNP [dm3] X_12135497_SNP [dm6]	G	A	1.976e^-4	0.582	INTRON Ten-a
X	12029591	X_12029591_SNP [dm3] X_12135558_SNP [dm6]	G	T	1.976e^-4	0.582	INTRON Ten-a
2R	9803515	2R_9803515_DEL [dm3] 2R_13916010_DEL [dm6]	ATGA	A	1.985e^-4	0.582	INTRON shot
3L	2725200	3L_2725200_SNP [dm3] 3L_2725200_SNP [dm6]	T	C	2.002e^-4	0.582	INTRON Mrtf
3L	8326973	3L_8326973_SNP [dm3] 3L_8333873_SNP [dm6]	T	A	2.005e^-4	0.582	INTERGENIC
3L	7076152	3L_7076152_SNP [dm3] 3L_7083052_SNP [dm6]	A	G	2.007e^-4	0.582	INTERGENIC
2L	15835962	2L_15835962_SNP [dm3] 2L_15835962_SNP [dm6]	T	C	2.012e^-4	0.582	UPSTREAM CG18518 DOWNSTREAM CR31822 INTERGENIC
2L	6370500	2L_6370500_SNP [dm3] 2L_6370500_SNP [dm6]	G	A	2.016e^-4	0.582	DOWNSTREAM CG9505 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	5989273	2L_5989273_SNP [dm3] 2L_5989273_SNP [dm6]	G	A	2.018e^-4	0.582	DOWNSTREAM lid & 1 other INTERGENIC
3L	17452870	3L_17452870_SNP [dm3] 3L_17459770_SNP [dm6]	C	T	2.019e^-4	0.582	UPSTREAM CR44565 INTERGENIC
2L	15201999	2L_15201999_SNP [dm3] 2L_15201999_SNP [dm6]	T	A	2.019e^-4	0.582	UPSTREAM CR43357 INTRON Sfp35C
2L	1486414	2L_1486414_SNP [dm3] 2L_1486414_SNP [dm6]	T	G	2.022e^-4	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1486450	2L_1486450_SNP [dm3] 2L_1486450_SNP [dm6]	C	T	2.022e^-4	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1486491	2L_1486491_SNP [dm3] 2L_1486491_SNP [dm6]	C	A	2.022e^-4	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1486495	2L_1486495_SNP [dm3] 2L_1486495_SNP [dm6]	G	T	2.022e^-4	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1486499	2L_1486499_SNP [dm3] 2L_1486499_SNP [dm6]	A	T	2.022e^-4	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2281422	2L_2281422_SNP [dm3] 2L_2281422_SNP [dm6]	A	G	2.024e^-4	0.582	INTERGENIC
3L	10807700	3L_10807700_SNP [dm3] 3L_10814600_SNP [dm6]	A	T	2.027e^-4	0.582	UPSTREAM CG42831 INTERGENIC
3L	1996172	3L_1996172_SNP [dm3] 3L_1996172_SNP [dm6]	G	T	2.041e^-4	0.584	INTERGENIC
2L	8641466	2L_8641466_SNP [dm3] 2L_8641466_SNP [dm6]	C	T	2.046e^-4	0.584	INTRON Sema-1a
2R	7151355	2R_7151355_SNP [dm3] 2R_11263850_SNP [dm6]	G	T	2.046e^-4	0.584	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
X	21210364	X_21210364_SNP [dm3] X_21339337_SNP [dm6]	G	A	2.047e^-4	0.584	UPSTREAM fliI & 1 other INTRON tty	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Ubx
3R	20397408	3R_20397408_SNP [dm3] 3R_24571686_SNP [dm6]	G	A	2.049e^-4	0.584	UTR_5_PRIME CG13624 INTRON CG13624	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19370186	2R_19370186_SNP [dm3] 2R_23482663_SNP [dm6]	T	A	2.059e^-4	0.586	INTRON CG43795
2L	9867922	2L_9867922_SNP [dm3] 2L_9867922_SNP [dm6]	A	G	2.064e^-4	0.586	INTRON nAChRalpha6
2L	1450149	2L_1450149_INS [dm3] 2L_1450149_INS [dm6]	A	ATCCGCTGGAAACTA...	2.071e^-4	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	13949840	2R_13949840_SNP [dm3] 2R_18062335_SNP [dm6]	A	T	2.072e^-4	0.586	UPSTREAM CG34386 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	573470	X_573470_SNP [dm3] X_679437_SNP [dm6]	C	A	2.075e^-4	0.586	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6929905	2R_6929905_SNP [dm3] 2R_11042400_SNP [dm6]	G	A	2.082e^-4	0.586	INTRON luna	TF binding site mE1_TFBS_cad
2R	6785683	2R_6785683_SNP [dm3] 2R_10898178_SNP [dm6]	T	C	2.090e^-4	0.586	UTR_3_PRIME Rpb5 UPSTREAM CG7712 DOWNSTREAM CG12942 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco
2R	9262010	2R_9262010_SNP [dm3] 2R_13374505_SNP [dm6]	T	C	2.092e^-4	0.586	INTERGENIC
3L	7076488	3L_7076488_SNP [dm3] 3L_7083388_SNP [dm6]	C	G	2.093e^-4	0.586	INTERGENIC
3L	1018253	3L_1018253_SNP [dm3] 3L_1018253_SNP [dm6]	T	C	2.093e^-4	0.586	INTRON trio
2R	7151407	2R_7151407_SNP [dm3] 2R_11263902_SNP [dm6]	C	G	2.102e^-4	0.586	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2R	7151410	2R_7151410_SNP [dm3] 2R_11263905_SNP [dm6]	T	G	2.102e^-4	0.586	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2R	7151413	2R_7151413_MNP [dm3] 2R_11263908_MNP [dm6]	AGAT	GACA	2.102e^-4	0.586	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2R	3256513	2R_3256513_SNP [dm3] 2R_7369008_SNP [dm6]	T	G	2.103e^-4	0.586	INTRON Dscam1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	11368036	3L_11368036_SNP [dm3] 3L_11374936_SNP [dm6]	T	C	2.106e^-4	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19237930	3R_19237930_SNP [dm3] 3R_23412208_SNP [dm6]	G	C	2.112e^-4	0.586	NON_SYNONYMOUS_CODING CG4374	TF binding site mE1_TFBS_chinmo
2L	19197918	2L_19197918_SNP [dm3] 2L_19197918_SNP [dm6]	C	A	2.112e^-4	0.586	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13953730	3R_13953730_SNP [dm3] 3R_18128008_SNP [dm6]	G	A	2.118e^-4	0.586	INTRON sr	TF binding site mE1_TFBS_cad
3L	5364148	3L_5364148_SNP [dm3] 3L_5371048_SNP [dm6]	G	C	2.120e^-4	0.586	DOWNSTREAM CR44515 & 1 other INTERGENIC
3R	15382116	3R_15382116_SNP [dm3] 3R_19556394_SNP [dm6]	G	C	2.125e^-4	0.586	INTRON Dys
3R	15382117	3R_15382117_SNP [dm3] 3R_19556395_SNP [dm6]	C	T	2.125e^-4	0.586	INTRON Dys
2L	1486566	2L_1486566_SNP [dm3] 2L_1486566_SNP [dm6]	A	C	2.126e^-4	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16789968	2R_16789968_SNP [dm3] 2R_20902463_SNP [dm6]	G	A	2.132e^-4	0.586	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	10079176	2L_10079176_SNP [dm3] 2L_10079176_SNP [dm6]	G	A	2.133e^-4	0.586	INTRON CG44153
3R	22823891	3R_22823891_SNP [dm3] 3R_26998169_SNP [dm6]	G	C	2.138e^-4	0.586	INTRON RYa-R
2L	18376251	2L_18376251_SNP [dm3] 2L_18376251_SNP [dm6]	G	A	2.144e^-4	0.586	INTRON Fas3
3L	8191167	3L_8191167_SNP [dm3] 3L_8198067_SNP [dm6]	T	G	2.147e^-4	0.586	UPSTREAM CG8005 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15736994	3L_15736994_SNP [dm3] 3L_15743894_SNP [dm6]	T	C	2.148e^-4	0.586	INTERGENIC
3L	3510639	3L_3510639_SNP [dm3] 3L_3510639_SNP [dm6]	C	A	2.149e^-4	0.586	UTR_3_PRIME CG42324 DOWNSTREAM ImpE2
2L	15201949	2L_15201949_SNP [dm3] 2L_15201949_SNP [dm6]	G	A	2.155e^-4	0.587	SYNONYMOUS_CODING Sfp35C UPSTREAM CR43357
3L	677592	3L_677592_SNP [dm3] 3L_677592_SNP [dm6]	C	A	2.166e^-4	0.589	DOWNSTREAM CG17129 INTERGENIC
2L	7265724	2L_7265724_SNP [dm3] 2L_7265724_SNP [dm6]	C	T	2.177e^-4	0.591	INTRON Wnt4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1251182	2L_1251182_SNP [dm3] 2L_1251182_SNP [dm6]	A	C	2.178e^-4	0.591	INTERGENIC
3L	12600805	3L_12600805_SNP [dm3] 3L_12607705_SNP [dm6]	A	G	2.183e^-4	0.591	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19370326	2R_19370326_SNP [dm3] 2R_23482803_SNP [dm6]	G	A	2.184e^-4	0.591	INTRON CG43795
3R	26962053	3R_26962053_SNP [dm3] 3R_31136331_SNP [dm6]	A	G	2.194e^-4	0.591	INTRON Gycbeta100B
2L	1872223	2L_1872223_SNP [dm3] 2L_1872223_SNP [dm6]	A	C	2.197e^-4	0.591	UPSTREAM CR44075 INTRON CG31663
3L	11537437	3L_11537437_SNP [dm3] 3L_11544337_SNP [dm6]	A	C	2.200e^-4	0.591	INTRON Mob2
3L	11537440	3L_11537440_SNP [dm3] 3L_11544340_SNP [dm6]	T	A	2.200e^-4	0.591	INTRON Mob2
2L	3451268	2L_3451268_SNP [dm3] 2L_3451268_SNP [dm6]	T	A	2.205e^-4	0.592	INTRON Snx1	TF binding site mE1_TFBS_cad
3L	12738804	3L_12738804_INS [dm3] 3L_12745704_INS [dm6]	G	TAAATAC	2.218e^-4	0.594	DOWNSTREAM CG32112 & 1 other INTRON CG32109
3L	12738649	3L_12738649_SNP [dm3] 3L_12745549_SNP [dm6]	A	T	2.224e^-4	0.594	DOWNSTREAM CG32112 INTRON CG32109
2R	19538449	2R_19538449_SNP [dm3] 2R_23650926_SNP [dm6]	C	A	2.226e^-4	0.594	SYNONYMOUS_CODING retn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7151419	2R_7151419_SNP [dm3] 2R_11263914_SNP [dm6]	A	C	2.227e^-4	0.594	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3L	5060918	3L_5060918_SNP [dm3] 3L_5060918_SNP [dm6]	A	G	2.253e^-4	0.601	INTRON Con
2R	7151294	2R_7151294_SNP [dm3] 2R_11263789_SNP [dm6]	A	T	2.258e^-4	0.601	INTERGENIC	TF binding site mE1_TFBS_ttk
X	17571231	X_17571231_SNP [dm3] X_17677198_SNP [dm6]	T	G	2.265e^-4	0.602	SYNONYMOUS_CODING chas UTR_5_PRIME chas	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	27143639	3R_27143639_SNP [dm3] 3R_31317917_SNP [dm6]	G	C	2.272e^-4	0.602	INTRON CG34347
3L	5362158	3L_5362158_SNP [dm3] 3L_5369058_SNP [dm6]	A	G	2.272e^-4	0.602	UPSTREAM CR44515 INTERGENIC
3L	7132764	3L_7132764_SNP [dm3] 3L_7139664_SNP [dm6]	A	T	2.285e^-4	0.604	INTRON melt
3L	2419695	3L_2419695_DEL [dm3] 3L_2419695_DEL [dm6]	AA	A	2.294e^-4	0.604	INTRON CG45186
2L	8979267	2L_8979267_SNP [dm3] 2L_8979267_SNP [dm6]	G	T	2.294e^-4	0.604	INTRON CG13101
2L	2336163	2L_2336163_SNP [dm3] 2L_2336163_SNP [dm6]	A	G	2.296e^-4	0.604	INTRON CG9967 & 1 other
2L	8178497	2L_8178497_SNP [dm3] 2L_8178497_SNP [dm6]	T	C	2.302e^-4	0.604	SYNONYMOUS_CODING Piezo
3R	12411998	3R_12411998_SNP [dm3] 3R_16586276_SNP [dm6]	C	G	2.305e^-4	0.604	INTERGENIC
3L	13063010	3L_13063010_SNP [dm3] 3L_13069910_SNP [dm6]	T	C	2.305e^-4	0.604	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13063028	3L_13063028_SNP [dm3] 3L_13069928_SNP [dm6]	T	C	2.305e^-4	0.604	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17756336	3L_17756336_SNP [dm3] 3L_17763236_SNP [dm6]	C	T	2.308e^-4	0.604	DOWNSTREAM CG32181 INTRON Adgf-A & 1 other
3L	3773882	3L_3773882_SNP [dm3] 3L_3773882_SNP [dm6]	G	T	2.312e^-4	0.604	INTRON CG32264
3R	13825561	3R_13825561_SNP [dm3] 3R_17999839_SNP [dm6]	G	A	2.317e^-4	0.604	INTRON cpo
2R	8582868	2R_8582868_SNP [dm3] 2R_12695363_SNP [dm6]	A	C	2.318e^-4	0.604	INTERGENIC
2R	9263302	2R_9263302_SNP [dm3] 2R_13375797_SNP [dm6]	T	G	2.333e^-4	0.607	DOWNSTREAM CG10814 INTERGENIC
2L	3698288	2L_3698288_SNP [dm3] 2L_3698288_SNP [dm6]	G	A	2.350e^-4	0.611	UPSTREAM CG3604 DOWNSTREAM CG10031 INTERGENIC
2L	9678709	2L_9678709_SNP [dm3] 2L_9678709_SNP [dm6]	C	T	2.354e^-4	0.611	INTERGENIC
2R	9248254	2R_9248254_SNP [dm3] 2R_13360749_SNP [dm6]	T	A	2.358e^-4	0.611	INTERGENIC
2R	12439016	2R_12439016_SNP [dm3] 2R_16551511_SNP [dm6]	T	C	2.370e^-4	0.613	UPSTREAM Syn2 INTERGENIC
3L	5044337	3L_5044337_DEL [dm3] 3L_5044337_DEL [dm6]	TT	T	2.374e^-4	0.613	INTRON Con
3L	13120818	3L_13120818_SNP [dm3] 3L_13127718_SNP [dm6]	A	T	2.382e^-4	0.615	INTERGENIC
3L	5064780	3L_5064780_SNP [dm3] 3L_5064780_SNP [dm6]	A	C	2.390e^-4	0.615	INTRON Con
X	19702497	X_19702497_SNP [dm3] X_19808464_SNP [dm6]	A	G	2.391e^-4	0.615	INTERGENIC
2R	19473086	2R_19473086_SNP [dm3] 2R_23585563_SNP [dm6]	T	G	2.393e^-4	0.615	INTRON apt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17553851	X_17553851_INS [dm3] X_17659818_INS [dm6]	T	TC	2.400e^-4	0.616	INTRON beta-Spec	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	15201972	2L_15201972_SNP [dm3] 2L_15201972_SNP [dm6]	T	C	2.410e^-4	0.617	NON_SYNONYMOUS_CODING Sfp35C UPSTREAM CR43357
X	3426542	X_3426542_SNP [dm3] X_3532509_SNP [dm6]	T	A	2.411e^-4	0.617	INTRON CG32791
2R	14543032	2R_14543032_SNP [dm3] 2R_18655527_SNP [dm6]	T	G	2.413e^-4	0.617	INTRON SP2637	TF binding site BDTNP1_TFBS_prd
3L	17452982	3L_17452982_INS [dm3] 3L_17459882_INS [dm6]	T	TAG	2.423e^-4	0.617	UPSTREAM CR44565 INTERGENIC
3L	11537457	3L_11537457_SNP [dm3] 3L_11544357_SNP [dm6]	A	C	2.429e^-4	0.617	INTRON Mob2
2L	7010292	2L_7010292_SNP [dm3] 2L_7010292_SNP [dm6]	C	T	2.433e^-4	0.617	SPLICE_SITE_DONOR uif UPSTREAM uif INTRON uif	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	23232771	3R_23232771_SNP [dm3] 3R_27407049_SNP [dm6]	T	A	2.439e^-4	0.617	INTRON side	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1486578	2L_1486578_SNP [dm3] 2L_1486578_SNP [dm6]	A	T	2.440e^-4	0.617	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	539462	2L_539462_SNP [dm3] 2L_539462_SNP [dm6]	A	G	2.441e^-4	0.617	INTRON ush	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	5989162	2L_5989162_SNP [dm3] 2L_5989162_SNP [dm6]	T	A	2.443e^-4	0.617	DOWNSTREAM lid & 1 other INTERGENIC
2L	5989184	2L_5989184_SNP [dm3] 2L_5989184_SNP [dm6]	C	T	2.443e^-4	0.617	DOWNSTREAM lid & 1 other INTERGENIC
3L	5363442	3L_5363442_SNP [dm3] 3L_5370342_SNP [dm6]	T	C	2.448e^-4	0.617	DOWNSTREAM CR44515 & 1 other INTERGENIC
3L	2831101	3L_2831101_SNP [dm3] 3L_2831101_SNP [dm6]	G	T	2.448e^-4	0.617	INTRON CG43444
2L	4726496	2L_4726496_SNP [dm3] 2L_4726496_SNP [dm6]	A	C	2.461e^-4	0.62	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	10840187	3L_10840187_SNP [dm3] 3L_10847087_SNP [dm6]	C	T	2.467e^-4	0.62	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	12093356	2R_12093356_SNP [dm3] 2R_16205851_SNP [dm6]	T	A	2.469e^-4	0.62	UPSTREAM mrj INTRON mrj	TF binding site mE1_TFBS_sens
3L	18382091	3L_18382091_SNP [dm3] 3L_18388991_SNP [dm6]	C	T	2.478e^-4	0.621	INTERGENIC
3L	2342584	3L_2342584_SNP [dm3] 3L_2342584_SNP [dm6]	C	T	2.492e^-4	0.622	INTRON MsR1
2L	11784311	2L_11784311_SNP [dm3] 2L_11784311_SNP [dm6]	G	A	2.498e^-4	0.622	INTERGENIC
2R	9263257	2R_9263257_SNP [dm3] 2R_13375752_SNP [dm6]	A	T	2.499e^-4	0.622	DOWNSTREAM CG10814 INTERGENIC
2R	9263259	2R_9263259_SNP [dm3] 2R_13375754_SNP [dm6]	T	G	2.499e^-4	0.622	DOWNSTREAM CG10814 INTERGENIC
3L	12585176	3L_12585176_SNP [dm3] 3L_12592076_SNP [dm6]	C	T	2.503e^-4	0.622	INTRON ara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12585519	3L_12585519_SNP [dm3] 3L_12592419_SNP [dm6]	A	G	2.503e^-4	0.622	INTRON ara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3449899	2L_3449899_SNP [dm3] 2L_3449899_SNP [dm6]	C	G	2.505e^-4	0.622	SYNONYMOUS_CODING Snx1	TF binding site mE1_TFBS_cad
3L	7518621	3L_7518621_INS [dm3] 3L_7525521_INS [dm6]	A	AATAT	2.507e^-4	0.622	INTRON ltl
3L	10637198	3L_10637198_SNP [dm3] 3L_10644098_SNP [dm6]	C	G	2.522e^-4	0.625	NON_SYNONYMOUS_CODING CG14153 INTRON CG32066
X	2727058	X_2727058_SNP [dm3] X_2833025_SNP [dm6]	C	G	2.527e^-4	0.625	INTRON kirre
2R	7151372	2R_7151372_DEL [dm3] 2R_11263867_DEL [dm6]	AT	A	2.530e^-4	0.625	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
X	3253060	X_3253060_SNP [dm3] X_3359027_SNP [dm6]	G	A	2.535e^-4	0.626	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	19268150	3R_19268150_SNP [dm3] 3R_23442428_SNP [dm6]	A	C	2.544e^-4	0.626	INTRON CG4374
2R	9249313	2R_9249313_SNP [dm3] 2R_13361808_SNP [dm6]	G	C	2.545e^-4	0.626	DOWNSTREAM CR45312 INTERGENIC
2L	11232959	2L_11232959_SNP [dm3] 2L_11232959_SNP [dm6]	T	A	2.555e^-4	0.628	INTRON ab
3R	23389469	3R_23389469_DEL [dm3] 3R_27563747_DEL [dm6]	TT	T	2.559e^-4	0.628	UTR_3_PRIME wdb
3L	2413171	3L_2413171_SNP [dm3] 3L_2413171_SNP [dm6]	G	T	2.561e^-4	0.628	UPSTREAM CG45186 INTRON CG45186
3L	5050294	3L_5050294_SNP [dm3] 3L_5050294_SNP [dm6]	A	G	2.568e^-4	0.628	DOWNSTREAM CR43884 INTRON Con
2R	7015770	2R_7015770_SNP [dm3] 2R_11128265_SNP [dm6]	G	T	2.570e^-4	0.628	INTERGENIC
2L	15487323	2L_15487323_SNP [dm3] 2L_15487323_SNP [dm6]	A	C	2.578e^-4	0.629	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17968709	3R_17968709_SNP [dm3] 3R_22142987_SNP [dm6]	A	G	2.578e^-4	0.629	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5081891	2L_5081891_DEL [dm3] 2L_5081891_DEL [dm6]	TT	T	2.581e^-4	0.629	INTRON pgant5	TF binding site mE1_TFBS_kn
3R	25156695	3R_25156695_SNP [dm3] 3R_29330973_SNP [dm6]	A	T	2.589e^-4	0.629	INTERGENIC
3L	5355718	3L_5355718_SNP [dm3] 3L_5362618_SNP [dm6]	G	A	2.590e^-4	0.629	UTR_3_PRIME CG4769 DOWNSTREAM Uev1A & 1 other
2L	11706759	2L_11706759_SNP [dm3] 2L_11706759_SNP [dm6]	T	G	2.611e^-4	0.633	INTERGENIC
3L	13120811	3L_13120811_SNP [dm3] 3L_13127711_SNP [dm6]	G	T	2.619e^-4	0.633	INTERGENIC
2R	7151411	2R_7151411_SNP [dm3] 2R_11263906_SNP [dm6]	T	A	2.625e^-4	0.633	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3L	13837741	3L_13837741_SNP [dm3] 3L_13844641_SNP [dm6]	A	C	2.627e^-4	0.633	SYNONYMOUS_CODING Tsp68C	TF binding site mE1_TFBS_HSA
3R	9890642	3R_9890642_SNP [dm3] 3R_14064920_SNP [dm6]	T	A	2.630e^-4	0.633	INTRON foxo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6233429	2L_6233429_SNP [dm3] 2L_6233429_SNP [dm6]	T	G	2.631e^-4	0.633	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9488870	2L_9488870_SNP [dm3] 2L_9488870_SNP [dm6]	A	G	2.635e^-4	0.633	INTERGENIC
2L	9488968	2L_9488968_INS [dm3] 2L_9488968_INS [dm6]	T	TT	2.635e^-4	0.633	INTERGENIC
3L	21292100	3L_21292100_DEL [dm3] 3L_21299000_DEL [dm6]	CTT	C	2.638e^-4	0.633	FRAME_SHIFT CG43702	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11374443	3L_11374443_SNP [dm3] 3L_11381343_SNP [dm6]	T	C	2.654e^-4	0.636	INTERGENIC
3L	13062880	3L_13062880_SNP [dm3] 3L_13069780_SNP [dm6]	A	C	2.662e^-4	0.636	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8655053	3L_8655053_INS [dm3] 3L_8661953_INS [dm6]	A	AAAAAATACA	2.664e^-4	0.636	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
3R	23230633	3R_23230633_SNP [dm3] 3R_27404911_SNP [dm6]	A	G	2.664e^-4	0.636	INTRON side
3L	9770209	3L_9770209_SNP [dm3] 3L_9777109_SNP [dm6]	C	T	2.676e^-4	0.638	INTRON CG8177
3L	17452934	3L_17452934_SNP [dm3] 3L_17459834_SNP [dm6]	C	G	2.696e^-4	0.64	UPSTREAM CR44565 INTERGENIC
2L	4726416	2L_4726416_SNP [dm3] 2L_4726416_SNP [dm6]	G	T	2.705e^-4	0.64	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	25990750	3R_25990750_SNP [dm3] 3R_30165028_SNP [dm6]	A	G	2.709e^-4	0.64	SYNONYMOUS_CODING CG31030 UTR_3_PRIME CG31030	TF binding site mE1_TFBS_cad
3L	11420890	3L_11420890_INS [dm3] 3L_11427790_INS [dm6]	G	GC	2.714e^-4	0.64	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	12715938	2L_12715938_SNP [dm3] 2L_12715938_SNP [dm6]	A	G	2.718e^-4	0.64	NON_SYNONYMOUS_CODING CG5792 INTRON CG5792
2L	12715943	2L_12715943_SNP [dm3] 2L_12715943_SNP [dm6]	C	T	2.718e^-4	0.64	SYNONYMOUS_CODING CG5792 INTRON CG5792
X	15797128	X_15797128_SNP [dm3] X_15903095_SNP [dm6]	G	A	2.721e^-4	0.64	INTRON shi
X	15797130	X_15797130_SNP [dm3] X_15903097_SNP [dm6]	C	A	2.721e^-4	0.64	INTRON shi
3L	5357880	3L_5357880_SNP [dm3] 3L_5364780_SNP [dm6]	C	T	2.724e^-4	0.64	INTRON Uev1A	TF binding site mE1_TFBS_inv
2L	4265787	2L_4265787_SNP [dm3] 2L_4265787_SNP [dm6]	C	G	2.726e^-4	0.64	INTERGENIC
2L	5550977	2L_5550977_SNP [dm3] 2L_5550977_SNP [dm6]	C	G	2.731e^-4	0.64	UPSTREAM CG14014 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	26091726	3R_26091726_SNP [dm3] 3R_30266004_SNP [dm6]	T	G	2.734e^-4	0.64	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3874452	X_3874452_INS [dm3] X_3980419_INS [dm6]	A	AGA	2.737e^-4	0.64	INTERGENIC
3R	26187531	3R_26187531_SNP [dm3] 3R_30361809_SNP [dm6]	C	T	2.741e^-4	0.64	SYNONYMOUS_CODING hdc UTR_3_PRIME hdc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15201705	2L_15201705_SNP [dm3] 2L_15201705_SNP [dm6]	G	A	2.741e^-4	0.64	UTR_3_PRIME Sfp35C UPSTREAM CR43357
3R	25469140	3R_25469140_SNP [dm3] 3R_29643418_SNP [dm6]	A	T	2.743e^-4	0.64	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6931292	2R_6931292_SNP [dm3] 2R_11043787_SNP [dm6]	T	G	2.747e^-4	0.64	INTRON luna	TF binding site mE1_TFBS_cad
3R	13509752	3R_13509752_SNP [dm3] 3R_17684030_SNP [dm6]	T	C	2.750e^-4	0.64	NON_SYNONYMOUS_CODING CG31251 DOWNSTREAM CG7655	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9914756	2L_9914756_SNP [dm3] 2L_9914756_SNP [dm6]	T	C	2.752e^-4	0.64	UTR_3_PRIME Srp54 UPSTREAM yip2
2L	9914763	2L_9914763_INS [dm3] 2L_9914763_INS [dm6]	A	AC	2.752e^-4	0.64	UTR_3_PRIME Srp54 UPSTREAM yip2
3L	2419134	3L_2419134_SNP [dm3] 3L_2419134_SNP [dm6]	C	T	2.754e^-4	0.64	INTRON CG45186
3L	15213581	3L_15213581_SNP [dm3] 3L_15220481_SNP [dm6]	T	G	2.766e^-4	0.641	INTERGENIC
3L	1203181	3L_1203181_SNP [dm3] 3L_1203181_SNP [dm6]	C	T	2.767e^-4	0.641	UPSTREAM CG32335 DOWNSTREAM CG9119 INTRON mwh
2R	19104643	2R_19104643_SNP [dm3] 2R_23217120_SNP [dm6]	G	A	2.771e^-4	0.641	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5028609	3R_5028609_SNP [dm3] 3R_9202887_SNP [dm6]	A	T	2.776e^-4	0.641	INTRON pum
X	21208450	X_21208450_SNP [dm3] X_21337423_SNP [dm6]	T	C	2.786e^-4	0.641	INTRON tty	TF binding site BDTNP1_TFBS_dl
3R	19743204	3R_19743204_SNP [dm3] 3R_23917482_SNP [dm6]	T	C	2.788e^-4	0.641	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6983048	3L_6983048_SNP [dm3] 3L_6989948_SNP [dm6]	A	C	2.788e^-4	0.641	UPSTREAM bin INTERGENIC
3R	22891907	3R_22891907_SNP [dm3] 3R_27066185_SNP [dm6]	T	C	2.797e^-4	0.641	SYNONYMOUS_CODING spz DOWNSTREAM CG43935	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	4949240	2R_4949240_SNP [dm3] 2R_9061735_SNP [dm6]	G	T	2.800e^-4	0.641	SYNONYMOUS_CODING CG8197 UPSTREAM ana	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21052038	X_21052038_SNP [dm3] X_21181011_SNP [dm6]	C	A	2.803e^-4	0.641	INTERGENIC	transposable element FlyBase
2R	14428468	2R_14428468_SNP [dm3] 2R_18540963_SNP [dm6]	C	G	2.805e^-4	0.641	INTRON Rgk2	TF binding site mE1_TFBS_chinmo
3L	11522586	3L_11522586_DEL [dm3] 3L_11529486_DEL [dm6]	TAT	A	2.808e^-4	0.641	INTRON Mob2
2L	11174497	2L_11174497_SNP [dm3] 2L_11174497_SNP [dm6]	G	C	2.808e^-4	0.641	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	3445344	3R_3445344_SNP [dm3] 3R_7619622_SNP [dm6]	C	T	2.813e^-4	0.641	INTRON CG34127
3L	3598970	3L_3598970_SNP [dm3] 3L_3598970_SNP [dm6]	A	G	2.817e^-4	0.641	INTRON Eip63E
2R	14543051	2R_14543051_DEL [dm3] 2R_18655546_DEL [dm6]	ATATAATTATAATTATTATT...	A	2.818e^-4	0.641	INTRON SP2637	TF binding site BDTNP1_TFBS_prd
X	15797091	X_15797091_SNP [dm3] X_15903058_SNP [dm6]	T	A	2.837e^-4	0.641	INTRON shi
2R	11438712	2R_11438712_INS [dm3] 2R_15551207_INS [dm6]	A	ACGTATA	2.838e^-4	0.641	INTERGENIC
3R	23632704	3R_23632704_SNP [dm3] 3R_27806982_SNP [dm6]	C	T	2.843e^-4	0.641	INTRON CG34353
2L	5989195	2L_5989195_SNP [dm3] 2L_5989195_SNP [dm6]	G	A	2.844e^-4	0.641	DOWNSTREAM lid & 1 other INTERGENIC
2L	5989204	2L_5989204_SNP [dm3] 2L_5989204_SNP [dm6]	G	T	2.844e^-4	0.641	DOWNSTREAM lid & 1 other INTERGENIC
2L	16011707	2L_16011707_SNP [dm3] 2L_16011707_SNP [dm6]	T	G	2.853e^-4	0.641	INTRON beat-Ic
3L	6932783	3L_6932783_SNP [dm3] 3L_6939683_SNP [dm6]	G	A	2.860e^-4	0.641	EXON CR45412
3L	2867264	3L_2867264_SNP [dm3] 3L_2867264_SNP [dm6]	T	G	2.861e^-4	0.641	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	2867265	3L_2867265_SNP [dm3] 3L_2867265_SNP [dm6]	C	A	2.861e^-4	0.641	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	2867315	3L_2867315_SNP [dm3] 3L_2867315_SNP [dm6]	C	T	2.861e^-4	0.641	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	7010342	2L_7010342_SNP [dm3] 2L_7010342_SNP [dm6]	C	A	2.863e^-4	0.641	UTR_5_PRIME uif UPSTREAM uif	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	19601920	2R_19601920_SNP [dm3] 2R_23714397_SNP [dm6]	T	C	2.865e^-4	0.641	INTRON Sesn	TF binding site BDTNP1_TFBS_dl
2L	11399551	2L_11399551_SNP [dm3] 2L_11399551_SNP [dm6]	A	G	2.865e^-4	0.641	INTERGENIC	regulatory region REDfly_CRMs
2L	15367866	2L_15367866_SNP [dm3] 2L_15367866_SNP [dm6]	G	T	2.865e^-4	0.641	INTERGENIC
3R	13644855	3R_13644855_SNP [dm3] 3R_17819133_SNP [dm6]	G	C	2.866e^-4	0.641	INTRON tinc
3R	9937878	3R_9937878_SNP [dm3] 3R_14112156_SNP [dm6]	G	A	2.876e^-4	0.642	NON_SYNONYMOUS_CODING CG14357 DOWNSTREAM Kif19A
3L	5050586	3L_5050586_SNP [dm3] 3L_5050586_SNP [dm6]	T	C	2.890e^-4	0.645	DOWNSTREAM CR43884 INTRON Con
3L	8159416	3L_8159416_SNP [dm3] 3L_8166316_SNP [dm6]	A	C	2.898e^-4	0.646	UPSTREAM CG13675 INTERGENIC
2L	2823474	2L_2823474_SNP [dm3] 2L_2823474_SNP [dm6]	A	G	2.906e^-4	0.646	DOWNSTREAM CG3123 INTRON Duox
2L	2823495	2L_2823495_SNP [dm3] 2L_2823495_SNP [dm6]	G	A	2.906e^-4	0.646	DOWNSTREAM CG3123 INTRON Duox
2R	9225248	2R_9225248_SNP [dm3] 2R_13337743_SNP [dm6]	G	C	2.925e^-4	0.649	INTRON CR44206	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	21114939	3L_21114939_DEL [dm3] 3L_21121839_DEL [dm6]	ATTGA	A	2.935e^-4	0.65	UTR_5_PRIME CG43938 INTRON ko	TF binding site mE1_TFBS_cad
3L	5442723	3L_5442723_INS [dm3] 3L_5449623_INS [dm6]	A	AA	2.936e^-4	0.65	INTERGENIC
2R	12813098	2R_12813098_SNP [dm3] 2R_16925593_SNP [dm6]	G	A	2.941e^-4	0.651	UTR_5_PRIME Pkc53E INTRON Pkc53E	TF binding site mE1_TFBS_HSA
3L	4434939	3L_4434939_SNP [dm3] 3L_4434939_SNP [dm6]	C	T	2.946e^-4	0.651	SYNONYMOUS_CODING nAChRbeta1	TF binding site mE1_TFBS_cad
2L	15154205	2L_15154205_SNP [dm3] 2L_15154205_SNP [dm6]	G	C	2.951e^-4	0.651	INTERGENIC
2L	907279	2L_907279_SNP [dm3] 2L_907279_SNP [dm6]	G	T	2.954e^-4	0.651	INTERGENIC
3L	8984099	3L_8984099_SNP [dm3] 3L_8990999_SNP [dm6]	A	G	2.963e^-4	0.652	UTR_3_PRIME smg UPSTREAM CG5280
3L	5442679	3L_5442679_SNP [dm3] 3L_5449579_SNP [dm6]	T	C	2.972e^-4	0.654	INTERGENIC
2L	10497741	2L_10497741_SNP [dm3] 2L_10497741_SNP [dm6]	T	A	2.988e^-4	0.656	INTRON Myo31DF
3R	25669003	3R_25669003_SNP [dm3] 3R_29843281_SNP [dm6]	G	A	2.997e^-4	0.657	INTRON Cad99C
2L	1344247	2L_1344247_SNP [dm3] 2L_1344247_SNP [dm6]	A	G	3.008e^-4	0.659	UPSTREAM Cdlc2 & 1 other INTERGENIC
3R	25371436	3R_25371436_SNP [dm3] 3R_29545714_SNP [dm6]	G	A	3.015e^-4	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12606076	3L_12606076_SNP [dm3] 3L_12612976_SNP [dm6]	G	A	3.024e^-4	0.66	INTRON caup	silencer mE1_HDAC_PRE
3L	12606083	3L_12606083_SNP [dm3] 3L_12612983_SNP [dm6]	C	T	3.024e^-4	0.66	INTRON caup	silencer mE1_HDAC_PRE
2L	2823723	2L_2823723_SNP [dm3] 2L_2823723_SNP [dm6]	T	G	3.027e^-4	0.66	SYNONYMOUS_CODING CG3123 INTRON Duox
3L	14093676	3L_14093676_SNP [dm3] 3L_14100576_SNP [dm6]	A	T	3.034e^-4	0.66	INTERGENIC
2R	8876326	2R_8876326_SNP [dm3] 2R_12988821_SNP [dm6]	A	T	3.037e^-4	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14152533	3L_14152533_INS [dm3] 3L_14159433_INS [dm6]	T	TTCGT	3.038e^-4	0.66	INTERGENIC	regulatory region REDfly_CRMs
3L	11625495	3L_11625495_SNP [dm3] 3L_11632395_SNP [dm6]	T	C	3.039e^-4	0.66	DOWNSTREAM CR45158 INTRON CG32091
2L	5070887	2L_5070887_SNP [dm3] 2L_5070887_SNP [dm6]	C	T	3.051e^-4	0.661	UPSTREAM RpL37A DOWNSTREAM qtc EXON CR45305	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
3R	9937944	3R_9937944_SNP [dm3] 3R_14112222_SNP [dm6]	T	A	3.057e^-4	0.662	UPSTREAM CG14357 DOWNSTREAM Kif19A INTERGENIC
3R	3465221	3R_3465221_SNP [dm3] 3R_7639499_SNP [dm6]	A	T	3.066e^-4	0.663	UPSTREAM CG34127 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	514149	2L_514149_SNP [dm3] 2L_514149_SNP [dm6]	T	G	3.072e^-4	0.664	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	13544981	2R_13544981_SNP [dm3] 2R_17657476_SNP [dm6]	G	A	3.076e^-4	0.664	INTRON CCHa1-R	TF binding site mE1_TFBS_sens
3L	6458617	3L_6458617_SNP [dm3] 3L_6465517_SNP [dm6]	G	A	3.081e^-4	0.664	INTRON CG42747	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23230755	3R_23230755_SNP [dm3] 3R_27405033_SNP [dm6]	T	C	3.082e^-4	0.664	INTRON side
2L	1626848	2L_1626848_SNP [dm3] 2L_1626848_SNP [dm6]	A	G	3.096e^-4	0.664	UPSTREAM CR44603 INTERGENIC
3L	2616188	3L_2616188_SNP [dm3] 3L_2616188_SNP [dm6]	C	T	3.099e^-4	0.664	INTRON Pxn	TF binding site mE1_TFBS_chinmo
2L	2644453	2L_2644453_SNP [dm3] 2L_2644453_SNP [dm6]	T	C	3.100e^-4	0.664	INTERGENIC
3L	11548318	3L_11548318_SNP [dm3] 3L_11555218_SNP [dm6]	C	T	3.100e^-4	0.664	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11552048	3L_11552048_SNP [dm3] 3L_11558948_SNP [dm6]	C	A	3.100e^-4	0.664	UPSTREAM Mob2 INTRON Mob2	TF binding site mE1_TFBS_cad
3L	17166931	3L_17166931_SNP [dm3] 3L_17173831_SNP [dm6]	A	T	3.104e^-4	0.664	INTRON Rbp6
2L	2770992	2L_2770992_SNP [dm3] 2L_2770992_SNP [dm6]	G	A	3.110e^-4	0.664	SYNONYMOUS_CODING CG15399 UPSTREAM colt DOWNSTREAM CG2862	TF binding site mE1_TFBS_eve mE1_TFBS_sens
2R	9291522	2R_9291522_SNP [dm3] 2R_13404017_SNP [dm6]	T	C	3.119e^-4	0.665	INTERGENIC
2L	9733720	2L_9733720_SNP [dm3] 2L_9733720_SNP [dm6]	A	T	3.123e^-4	0.665	INTRON Nckx30C	TF binding site mE1_TFBS_HSA
3L	5064907	3L_5064907_SNP [dm3] 3L_5064907_SNP [dm6]	T	A	3.125e^-4	0.665	INTRON Con
3R	17036855	3R_17036855_SNP [dm3] 3R_21211133_SNP [dm6]	T	A	3.132e^-4	0.665	SPLICE_SITE_REGION SNF4Agamma INTRON SNF4Agamma
2L	19177766	2L_19177766_SNP [dm3] 2L_19177766_SNP [dm6]	C	A	3.135e^-4	0.665	UTR_3_PRIME brat
3L	3488073	3L_3488073_DEL [dm3] 3L_3488073_DEL [dm6]	TT	T	3.136e^-4	0.665	INTRON CG42324
2L	7169477	2L_7169477_SNP [dm3] 2L_7169477_SNP [dm6]	G	C	3.144e^-4	0.666	INTERGENIC
2L	4726332	2L_4726332_SNP [dm3] 2L_4726332_SNP [dm6]	A	T	3.145e^-4	0.666	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	25308401	3R_25308401_SNP [dm3] 3R_29482679_SNP [dm6]	T	C	3.153e^-4	0.667	SYNONYMOUS_CODING Ptp99A	TF binding site mE1_TFBS_cad
3L	13068495	3L_13068495_SNP [dm3] 3L_13075395_SNP [dm6]	G	C	3.158e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	8759399	3L_8759399_SNP [dm3] 3L_8766299_SNP [dm6]	C	A	3.163e^-4	0.667	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	1470955	2L_1470955_SNP [dm3] 2L_1470955_SNP [dm6]	G	C	3.163e^-4	0.667	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	8998553	3L_8998553_SNP [dm3] 3L_9005453_SNP [dm6]	C	T	3.175e^-4	0.668	INTRON Doc3	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12216960	3L_12216960_SNP [dm3] 3L_12223860_SNP [dm6]	G	A	3.191e^-4	0.669	INTRON app
3R	23292838	3R_23292838_SNP [dm3] 3R_27467116_SNP [dm6]	G	A	3.192e^-4	0.669	DOWNSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23292839	3R_23292839_SNP [dm3] 3R_27467117_SNP [dm6]	T	C	3.192e^-4	0.669	DOWNSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7705165	2R_7705165_SNP [dm3] 2R_11817660_SNP [dm6]	A	T	3.193e^-4	0.669	INTERGENIC
2L	518545	2L_518545_SNP [dm3] 2L_518545_SNP [dm6]	G	A	3.202e^-4	0.67	INTRON ush	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14152551	3L_14152551_SNP [dm3] 3L_14159451_SNP [dm6]	G	A	3.215e^-4	0.671	INTERGENIC	regulatory region REDfly_CRMs
X	2578414	X_2578414_SNP [dm3] X_2684381_SNP [dm6]	A	G	3.223e^-4	0.671	UPSTREAM CR44470 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	2578425	X_2578425_SNP [dm3] X_2684392_SNP [dm6]	C	T	3.223e^-4	0.671	UPSTREAM CR44470 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	7226422	3L_7226422_SNP [dm3] 3L_7233322_SNP [dm6]	G	A	3.223e^-4	0.671	INTERGENIC
3L	7951064	3L_7951064_DEL [dm3] 3L_7957964_DEL [dm6]	CA	G	3.228e^-4	0.671	INTERGENIC
3L	11548629	3L_11548629_SNP [dm3] 3L_11555529_SNP [dm6]	T	C	3.230e^-4	0.671	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12216958	3L_12216958_SNP [dm3] 3L_12223858_SNP [dm6]	C	T	3.232e^-4	0.671	INTRON app
2R	786822	2R_786822_SNP [dm3] 2R_4899317_SNP [dm6]	T	C	3.240e^-4	0.672	INTRON CG44102	transposable element FlyBase
2L	756928	2L_756928_SNP [dm3] 2L_756928_SNP [dm6]	G	A	3.245e^-4	0.672	SYNONYMOUS_CODING GABA-B-R3 UTR_3_PRIME GABA-B-R3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6941269	3L_6941269_SNP [dm3] 3L_6948169_SNP [dm6]	T	G	3.247e^-4	0.672	INTRON tow
3L	7132756	3L_7132756_INS [dm3] 3L_7139656_INS [dm6]	T	TTA	3.254e^-4	0.672	INTRON melt
3L	7132761	3L_7132761_SNP [dm3] 3L_7139661_SNP [dm6]	T	A	3.254e^-4	0.672	INTRON melt
2R	11034907	2R_11034907_SNP [dm3] 2R_15147402_SNP [dm6]	C	G	3.271e^-4	0.674	NON_SYNONYMOUS_CODING CG8089 UPSTREAM CG7544	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	4485318	X_4485318_DEL [dm3] X_4591285_DEL [dm6]	TTT	T	3.279e^-4	0.674	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
X	4485328	X_4485328_INS [dm3] X_4591295_INS [dm6]	G	GT	3.279e^-4	0.674	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
3L	17166836	3L_17166836_SNP [dm3] 3L_17173736_SNP [dm6]	A	T	3.281e^-4	0.674	INTRON Rbp6
2L	1448110	2L_1448110_SNP [dm3] 2L_1448110_SNP [dm6]	G	T	3.284e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	7950230	3L_7950230_SNP [dm3] 3L_7957130_SNP [dm6]	T	C	3.292e^-4	0.674	INTERGENIC
3L	7950243	3L_7950243_SNP [dm3] 3L_7957143_SNP [dm6]	T	G	3.292e^-4	0.674	INTERGENIC
3R	23232978	3R_23232978_SNP [dm3] 3R_27407256_SNP [dm6]	A	T	3.300e^-4	0.675	INTRON side	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27164856	3R_27164856_SNP [dm3] 3R_31339134_SNP [dm6]	G	T	3.309e^-4	0.676	INTRON CG34347	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3373694	3R_3373694_SNP [dm3] 3R_7547972_SNP [dm6]	G	A	3.311e^-4	0.676	SYNONYMOUS_CODING alpha-Est1
2R	12937083	2R_12937083_SNP [dm3] 2R_17049578_SNP [dm6]	T	G	3.318e^-4	0.676	DOWNSTREAM CG9642 INTRON CG9646	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5351383	3L_5351383_SNP [dm3] 3L_5358283_SNP [dm6]	G	C	3.322e^-4	0.676	SYNONYMOUS_CODING Klp64D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5351407	3L_5351407_SNP [dm3] 3L_5358307_SNP [dm6]	G	T	3.322e^-4	0.676	SYNONYMOUS_CODING Klp64D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2359689	2L_2359689_SNP [dm3] 2L_2359689_SNP [dm6]	A	G	3.326e^-4	0.676	UTR_3_PRIME Rab5 DOWNSTREAM eys
3L	4384140	3L_4384140_SNP [dm3] 3L_4384140_SNP [dm6]	A	G	3.330e^-4	0.676	UPSTREAM slow INTERGENIC
2L	4726375	2L_4726375_SNP [dm3] 2L_4726375_SNP [dm6]	A	C	3.346e^-4	0.678	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	5053555	3L_5053555_SNP [dm3] 3L_5053555_SNP [dm6]	T	A	3.348e^-4	0.678	INTRON Con
3L	9390200	3L_9390200_SNP [dm3] 3L_9397100_SNP [dm6]	T	A	3.353e^-4	0.678	INTRON CG4080
3L	9390247	3L_9390247_SNP [dm3] 3L_9397147_SNP [dm6]	G	T	3.353e^-4	0.678	INTRON CG4080
X	21214035	X_21214035_SNP [dm3] X_21343008_SNP [dm6]	A	G	3.365e^-4	0.68	SYNONYMOUS_CODING fliI	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14098560	2L_14098560_SNP [dm3] 2L_14098560_SNP [dm6]	T	G	3.380e^-4	0.682	INTERGENIC
3R	3490105	3R_3490105_SNP [dm3] 3R_7664383_SNP [dm6]	C	A	3.388e^-4	0.683	INTRON Nlg1
X	7912355	X_7912355_SNP [dm3] X_8018322_SNP [dm6]	A	G	3.410e^-4	0.685	INTRON Tbh
3L	11420881	3L_11420881_SNP [dm3] 3L_11427781_SNP [dm6]	A	G	3.412e^-4	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	27122138	3R_27122138_SNP [dm3] 3R_31296416_SNP [dm6]	G	A	3.413e^-4	0.685	INTERGENIC
3L	1996237	3L_1996237_SNP [dm3] 3L_1996237_SNP [dm6]	C	G	3.413e^-4	0.685	INTERGENIC
2L	3968717	2L_3968717_SNP [dm3] 2L_3968717_SNP [dm6]	C	A	3.416e^-4	0.685	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	9669483	3L_9669483_SNP [dm3] 3L_9676383_SNP [dm6]	T	A	3.421e^-4	0.685	UPSTREAM fry INTRON fry	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5062201	3L_5062201_SNP [dm3] 3L_5062201_SNP [dm6]	C	A	3.426e^-4	0.685	INTRON Con
3L	11552780	3L_11552780_SNP [dm3] 3L_11559680_SNP [dm6]	A	G	3.427e^-4	0.685	UPSTREAM Mob2 INTRON Mob2
2L	3451309	2L_3451309_SNP [dm3] 2L_3451309_SNP [dm6]	A	C	3.429e^-4	0.685	SPLICE_SITE_REGION Snx1 SYNONYMOUS_CODING Snx1	TF binding site mE1_TFBS_cad
3R	24550228	3R_24550228_SNP [dm3] 3R_28724506_SNP [dm6]	A	G	3.434e^-4	0.685	INTRON htt
2L	5163578	2L_5163578_SNP [dm3] 2L_5163578_SNP [dm6]	A	G	3.438e^-4	0.685	SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	2537091	3L_2537091_SNP [dm3] 3L_2537091_SNP [dm6]	C	T	3.444e^-4	0.685	UPSTREAM Spn INTRON Spn	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	7075707	3L_7075707_SNP [dm3] 3L_7082607_SNP [dm6]	C	T	3.450e^-4	0.686	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12580442	2R_12580442_SNP [dm3] 2R_16692937_SNP [dm6]	T	C	3.455e^-4	0.686	INTRON CG30463 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11743039	X_11743039_SNP [dm3] X_11849006_SNP [dm6]	G	T	3.464e^-4	0.687	DOWNSTREAM CR45619 INTERGENIC
2R	9248855	2R_9248855_SNP [dm3] 2R_13361350_SNP [dm6]	G	T	3.466e^-4	0.687	DOWNSTREAM CR45312 INTERGENIC
3R	3575590	3R_3575590_SNP [dm3] 3R_7749868_SNP [dm6]	T	A	3.472e^-4	0.687	INTRON pyd3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22011214	3R_22011214_SNP [dm3] 3R_26185492_SNP [dm6]	G	C	3.476e^-4	0.687	UTR_5_PRIME CG31086 UTR_3_PRIME CG31323 UPSTREAM CG31086 DOWNSTREAM CG31323
3R	25804196	3R_25804196_SNP [dm3] 3R_29978474_SNP [dm6]	A	T	3.480e^-4	0.687	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	2149166	3L_2149166_SNP [dm3] 3L_2149166_SNP [dm6]	C	T	3.486e^-4	0.687	INTRON zormin
2L	16707953	2L_16707953_SNP [dm3] 2L_16707953_SNP [dm6]	C	A	3.504e^-4	0.687	INTRON CG31808
3L	7074734	3L_7074734_SNP [dm3] 3L_7081634_SNP [dm6]	T	A	3.506e^-4	0.687	INTERGENIC
2L	4726327	2L_4726327_SNP [dm3] 2L_4726327_SNP [dm6]	C	G	3.509e^-4	0.687	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2406809	2L_2406809_SNP [dm3] 2L_2406809_SNP [dm6]	T	C	3.523e^-4	0.687	SYNONYMOUS_CODING VGlut
2R	10205998	2R_10205998_SNP [dm3] 2R_14318493_SNP [dm6]	C	G	3.525e^-4	0.687	INTRON Shroom
3L	5065255	3L_5065255_SNP [dm3] 3L_5065255_SNP [dm6]	A	G	3.528e^-4	0.687	INTRON Con
2L	15101700	2L_15101700_SNP [dm3] 2L_15101700_SNP [dm6]	G	C	3.528e^-4	0.687	INTERGENIC
3L	4564608	3L_4564608_DEL [dm3] 3L_4564608_DEL [dm6]	GTTTTCGG	G	3.530e^-4	0.687	INTRON CG42540
3L	4564625	3L_4564625_SNP [dm3] 3L_4564625_SNP [dm6]	T	C	3.530e^-4	0.687	INTRON CG42540
3L	4564626	3L_4564626_SNP [dm3] 3L_4564626_SNP [dm6]	A	G	3.530e^-4	0.687	INTRON CG42540
3R	4252711	3R_4252711_SNP [dm3] 3R_8426989_SNP [dm6]	C	T	3.530e^-4	0.687	INTRON CG45263
X	3319875	X_3319875_SNP [dm3] X_3425842_SNP [dm6]	G	T	3.531e^-4	0.687	INTRON CR44999 & 1 other
2R	13509258	2R_13509258_SNP [dm3] 2R_17621753_SNP [dm6]	T	C	3.535e^-4	0.687	INTRON CG10936
2R	6822182	2R_6822182_SNP [dm3] 2R_10934677_SNP [dm6]	T	C	3.536e^-4	0.687	INTERGENIC
3R	11526213	3R_11526213_SNP [dm3] 3R_15700491_SNP [dm6]	G	A	3.541e^-4	0.688	INTERGENIC
3R	20709981	3R_20709981_SNP [dm3] 3R_24884259_SNP [dm6]	G	A	3.555e^-4	0.688	SYNONYMOUS_CODING CG31121	TF binding site mE1_TFBS_chinmo
2L	2553224	2L_2553224_SNP [dm3] 2L_2553224_SNP [dm6]	G	A	3.557e^-4	0.688	UPSTREAM CG3515 INTERGENIC
3L	11233114	3L_11233114_SNP [dm3] 3L_11240014_SNP [dm6]	C	G	3.558e^-4	0.688	INTERGENIC
3L	13711613	3L_13711613_SNP [dm3] 3L_13718513_SNP [dm6]	C	A	3.564e^-4	0.688	INTRON bru-3
2R	6847975	2R_6847975_SNP [dm3] 2R_10960470_SNP [dm6]	G	T	3.566e^-4	0.688	INTERGENIC
2L	15202013	2L_15202013_INS [dm3] 2L_15202013_INS [dm6]	A	ACATCTAAAAAAA...	3.567e^-4	0.688	UPSTREAM CR43357 INTRON Sfp35C
2L	2817285	2L_2817285_SNP [dm3] 2L_2817285_SNP [dm6]	T	C	3.585e^-4	0.689	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12216947	3L_12216947_SNP [dm3] 3L_12223847_SNP [dm6]	A	T	3.588e^-4	0.689	INTRON app
2R	19295849	2R_19295849_SNP [dm3] 2R_23408326_SNP [dm6]	A	C	3.595e^-4	0.689	INTERGENIC
2L	16374833	2L_16374833_SNP [dm3] 2L_16374833_SNP [dm6]	T	A	3.596e^-4	0.689	INTERGENIC
2L	16374851	2L_16374851_SNP [dm3] 2L_16374851_SNP [dm6]	T	A	3.596e^-4	0.689	INTERGENIC
2L	16374868	2L_16374868_DEL [dm3] 2L_16374868_DEL [dm6]	GT	G	3.596e^-4	0.689	INTERGENIC
2L	16374871	2L_16374871_SNP [dm3] 2L_16374871_SNP [dm6]	A	T	3.596e^-4	0.689	INTERGENIC
2L	16702284	2L_16702284_SNP [dm3] 2L_16702284_SNP [dm6]	G	A	3.602e^-4	0.689	EXON CR43670	TF binding site mE1_TFBS_sens
3L	11537281	3L_11537281_SNP [dm3] 3L_11544181_SNP [dm6]	A	C	3.606e^-4	0.689	INTRON Mob2
2L	8288556	2L_8288556_SNP [dm3] 2L_8288556_SNP [dm6]	G	C	3.625e^-4	0.689	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17140951	2L_17140951_SNP [dm3] 2L_17140951_SNP [dm6]	G	A	3.628e^-4	0.689	INTRON beat-IIIa & 1 other	regulatory region REDfly_CRMs
X	17573864	X_17573864_SNP [dm3] X_17679831_SNP [dm6]	A	T	3.636e^-4	0.689	INTRON chas
3L	8754981	3L_8754981_SNP [dm3] 3L_8761881_SNP [dm6]	G	C	3.643e^-4	0.689	NON_SYNONYMOUS_CODING Fhos	TF binding site mE1_TFBS_inv
3R	26299212	3R_26299212_SNP [dm3] 3R_30473490_SNP [dm6]	A	C	3.645e^-4	0.689	INTRON PH4alphaEFB
2L	9914355	2L_9914355_SNP [dm3] 2L_9914355_SNP [dm6]	G	T	3.647e^-4	0.689	SYNONYMOUS_CODING Srp54 UPSTREAM yip2
2R	19277678	2R_19277678_SNP [dm3] 2R_23390155_SNP [dm6]	G	A	3.649e^-4	0.689	SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19700648	2R_19700648_SNP [dm3] 2R_23813125_SNP [dm6]	C	A	3.654e^-4	0.689	SYNONYMOUS_CODING CG4797 EXON CR44807	TF binding site mE1_TFBS_chinmo
2R	17448124	2R_17448124_SNP [dm3] 2R_21560619_SNP [dm6]	G	A	3.666e^-4	0.689	UTR_3_PRIME CG10440 DOWNSTREAM Egfr
2R	16922797	2R_16922797_SNP [dm3] 2R_21035292_SNP [dm6]	T	A	3.676e^-4	0.689	INTERGENIC
2R	6725136	2R_6725136_SNP [dm3] 2R_10837631_SNP [dm6]	A	G	3.678e^-4	0.689	SYNONYMOUS_CODING CG7686	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11553405	3L_11553405_SNP [dm3] 3L_11560305_SNP [dm6]	T	A	3.680e^-4	0.689	INTRON Mob2
2L	8325955	2L_8325955_SNP [dm3] 2L_8325955_SNP [dm6]	A	T	3.689e^-4	0.689	UPSTREAM CG7781 INTERGENIC
2L	3039601	2L_3039601_SNP [dm3] 2L_3039601_SNP [dm6]	G	T	3.691e^-4	0.689	UPSTREAM CG17221 DOWNSTREAM CG17260 INTRON cnir	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	23230447	3R_23230447_SNP [dm3] 3R_27404725_SNP [dm6]	A	G	3.699e^-4	0.689	INTRON side
3L	15288900	3L_15288900_SNP [dm3] 3L_15295800_SNP [dm6]	C	T	3.699e^-4	0.689	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9932606	2R_9932606_SNP [dm3] 2R_14045101_SNP [dm6]	G	A	3.702e^-4	0.689	INTRON mam
2L	7006150	2L_7006150_SNP [dm3] 2L_7006150_SNP [dm6]	G	A	3.702e^-4	0.689	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3L	17166893	3L_17166893_SNP [dm3] 3L_17173793_SNP [dm6]	T	A	3.707e^-4	0.689	INTRON Rbp6
3L	17166897	3L_17166897_SNP [dm3] 3L_17173797_SNP [dm6]	A	G	3.707e^-4	0.689	INTRON Rbp6
3L	17166901	3L_17166901_SNP [dm3] 3L_17173801_SNP [dm6]	A	C	3.707e^-4	0.689	INTRON Rbp6
3L	17166902	3L_17166902_SNP [dm3] 3L_17173802_SNP [dm6]	T	G	3.707e^-4	0.689	INTRON Rbp6
3L	17166914	3L_17166914_INS [dm3] 3L_17173814_INS [dm6]	T	AAC	3.707e^-4	0.689	INTRON Rbp6
3L	17166920	3L_17166920_MNP [dm3] 3L_17173820_MNP [dm6]	AAC	GGT	3.707e^-4	0.689	INTRON Rbp6
3L	17166934	3L_17166934_INS [dm3] 3L_17173834_INS [dm6]	A	AA	3.707e^-4	0.689	INTRON Rbp6
3L	17166939	3L_17166939_SNP [dm3] 3L_17173839_SNP [dm6]	A	T	3.707e^-4	0.689	INTRON Rbp6
3L	17166943	3L_17166943_SNP [dm3] 3L_17173843_SNP [dm6]	A	T	3.707e^-4	0.689	INTRON Rbp6

By genomic position
Variant impact
Gene name

Microbiota_OTU124 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results