DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.876e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.088677

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	7.9722	0.0048
In_3R_Mo	7.0477	0.0295

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2179 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	4388500	3L_4388500_SNP [dm3] 3L_4388500_SNP [dm6]	G	A	8.950e^-7	0.503	INTRON slow
4	806036	4_806036_SNP [dm3] 4_785410_SNP [dm6]	T	A	1.456e^-6	0.503	INTRON MED26	transposable element FlyBase
3R	16033532	3R_16033532_SNP [dm3] 3R_20207810_SNP [dm6]	C	A	1.590e^-6	0.503	DOWNSTREAM CG17199 INTRON Nlg4
3L	4743440	3L_4743440_SNP [dm3] 3L_4743440_SNP [dm6]	C	T	2.929e^-6	0.503	INTRON RhoGEF64C
X	4444006	X_4444006_SNP [dm3] X_4549973_SNP [dm6]	G	C	3.074e^-6	0.503	UTR_3_PRIME CG11436 DOWNSTREAM CG15912 INTRON CR32773
3L	10712124	3L_10712124_INS [dm3] 3L_10719024_INS [dm6]	C	CC	3.123e^-6	0.503	INTERGENIC
4	911281	4_911281_SNP [dm3] 4_890655_SNP [dm6]	G	A	3.400e^-6	0.503	SYNONYMOUS_CODING unc-13 INTRON unc-13
4	1205061	4_1205061_SNP [dm3] 4_1184435_SNP [dm6]	A	T	3.975e^-6	0.503	INTERGENIC	transposable element FlyBase
3L	11925530	3L_11925530_SNP [dm3] 3L_11932430_SNP [dm6]	T	C	3.999e^-6	0.503	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9877610	3R_9877610_SNP [dm3] 3R_14051888_SNP [dm6]	C	T	4.254e^-6	0.503	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	20045017	2R_20045017_SNP [dm3] 2R_24157494_SNP [dm6]	A	C	4.824e^-6	0.503	SYNONYMOUS_CODING Dat DOWNSTREAM DnaJ-60 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
4	869395	4_869395_SNP [dm3] 4_848769_SNP [dm6]	A	G	4.829e^-6	0.503	INTERGENIC	transposable element FlyBase
4	1072823	4_1072823_SNP [dm3] 4_1052197_SNP [dm6]	G	A	4.846e^-6	0.503	UPSTREAM CaMKII INTRON CaMKII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	15252720	3L_15252720_SNP [dm3] 3L_15259620_SNP [dm6]	A	T	4.859e^-6	0.503	INTERGENIC	TF binding site mE1_TFBS_inv
3R	3028276	3R_3028276_SNP [dm3] 3R_7202554_SNP [dm6]	T	A	5.212e^-6	0.503	INTRON CG14609
3L	18199310	3L_18199310_SNP [dm3] 3L_18206210_SNP [dm6]	C	T	6.220e^-6	0.503	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	17345871	X_17345871_SNP [dm3] X_17451838_SNP [dm6]	A	T	7.019e^-6	0.503	INTRON CG8568
X	17345933	X_17345933_SNP [dm3] X_17451900_SNP [dm6]	T	C	7.120e^-6	0.503	INTRON CG8568
X	17345945	X_17345945_DEL [dm3] X_17451912_DEL [dm6]	TAA	G	7.120e^-6	0.503	INTRON CG8568
X	17345986	X_17345986_SNP [dm3] X_17451953_SNP [dm6]	C	A	7.120e^-6	0.503	INTRON CG8568
3R	15992223	3R_15992223_SNP [dm3] 3R_20166501_SNP [dm6]	A	G	7.237e^-6	0.503	INTERGENIC
3R	3028275	3R_3028275_SNP [dm3] 3R_7202553_SNP [dm6]	A	G	7.347e^-6	0.503	INTRON CG14609
2L	9083033	2L_9083033_SNP [dm3] 2L_9083033_SNP [dm6]	T	A	8.450e^-6	0.503	INTERGENIC
3R	22662469	3R_22662469_SNP [dm3] 3R_26836747_SNP [dm6]	A	G	8.763e^-6	0.503	INTRON Tl
3R	16033563	3R_16033563_SNP [dm3] 3R_20207841_SNP [dm6]	G	A	9.075e^-6	0.503	DOWNSTREAM CG17199 INTRON Nlg4
3L	10712198	3L_10712198_SNP [dm3] 3L_10719098_SNP [dm6]	G	A	9.529e^-6	0.503	INTERGENIC
X	17345922	X_17345922_SNP [dm3] X_17451889_SNP [dm6]	A	C	9.891e^-6	0.503	INTRON CG8568
4	912580	4_912580_SNP [dm3] 4_891954_SNP [dm6]	G	C	9.980e^-6	0.503	NON_SYNONYMOUS_CODING unc-13 INTRON unc-13
3L	10712195	3L_10712195_SNP [dm3] 3L_10719095_SNP [dm6]	C	A	1.053e^-5	0.503	INTERGENIC
3R	14854506	3R_14854506_SNP [dm3] 3R_19028784_SNP [dm6]	T	G	1.067e^-5	0.503	UTR_5_PRIME gatA UPSTREAM P5cr DOWNSTREAM NP15.6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14218680	2R_14218680_DEL [dm3] 2R_18331175_DEL [dm6]	CC	C	1.092e^-5	0.503	INTRON sbb
3L	2171477	3L_2171477_SNP [dm3] 3L_2171477_SNP [dm6]	A	C	1.286e^-5	0.503	UPSTREAM CG5704 DOWNSTREAM CR15821 INTERGENIC
4	569787	4_569787_DEL [dm3] 4_549161_DEL [dm6]	TCT	T	1.293e^-5	0.503	INTRON Thd1	transposable element FlyBase
4	1028630	4_1028630_SNP [dm3] 4_1008004_SNP [dm6]	A	C	1.457e^-5	0.503	DOWNSTREAM toy INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	19399204	2L_19399204_SNP [dm3] 2L_19399204_SNP [dm6]	C	A	1.462e^-5	0.503	UPSTREAM CG17544 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
4	967150	4_967150_SNP [dm3] 4_946524_SNP [dm6]	A	T	1.477e^-5	0.503	SYNONYMOUS_CODING mGluR UTR_3_PRIME mGluR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
4	809073	4_809073_SNP [dm3] 4_788447_SNP [dm6]	C	T	1.477e^-5	0.503	UPSTREAM MED26 INTRON MED26	TF binding site BDTNP1_TFBS_dl
4	982386	4_982386_SNP [dm3] 4_961760_SNP [dm6]	G	C	1.477e^-5	0.503	DOWNSTREAM fuss INTRON CR44030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
4	917516	4_917516_DEL [dm3] 4_896890_DEL [dm6]	TT	T	1.496e^-5	0.503	INTRON unc-13
4	1024906	4_1024906_SNP [dm3] 4_1004280_SNP [dm6]	A	G	1.499e^-5	0.503	SYNONYMOUS_CODING toy
4	1028952	4_1028952_SNP [dm3] 4_1008326_SNP [dm6]	G	A	1.499e^-5	0.503	DOWNSTREAM toy INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
4	1045415	4_1045415_SNP [dm3] 4_1024789_SNP [dm6]	A	C	1.499e^-5	0.503	INTRON PlexA	transposable element FlyBase
4	1268508	4_1268508_SNP [dm3] 4_1264782_SNP [dm6]	G	A	1.499e^-5	0.503	SYNONYMOUS_CODING Caps
4	849672	4_849672_SNP [dm3] 4_829046_SNP [dm6]	A	T	1.499e^-5	0.503	INTRON Sox102F	TF binding site BDTNP1_TFBS_twi
4	849677	4_849677_INS [dm3] 4_829051_INS [dm6]	A	AGTATTTTTATTCTTGATCA...	1.499e^-5	0.503	INTRON Sox102F	TF binding site BDTNP1_TFBS_twi
4	917974	4_917974_SNP [dm3] 4_897348_SNP [dm6]	C	G	1.499e^-5	0.503	INTRON unc-13
4	927054	4_927054_SNP [dm3] 4_906428_SNP [dm6]	A	G	1.499e^-5	0.503	UTR_5_PRIME unc-13 UPSTREAM CR43361 INTRON CR43361	transposable element FlyBase
4	941570	4_941570_SNP [dm3] 4_920944_SNP [dm6]	A	G	1.499e^-5	0.503	NON_SYNONYMOUS_CODING eIF4G
4	942408	4_942408_SNP [dm3] 4_921782_SNP [dm6]	A	G	1.499e^-5	0.503	INTRON eIF4G	transposable element FlyBase
4	943898	4_943898_SNP [dm3] 4_923272_SNP [dm6]	G	C	1.499e^-5	0.503	INTRON eIF4G
4	954021	4_954021_SNP [dm3] 4_933395_SNP [dm6]	A	T	1.499e^-5	0.503	INTERGENIC	transposable element FlyBase
4	954869	4_954869_SNP [dm3] 4_934243_SNP [dm6]	A	G	1.499e^-5	0.503	INTERGENIC	transposable element FlyBase
4	960927	4_960927_SNP [dm3] 4_940301_SNP [dm6]	G	A	1.499e^-5	0.503	SYNONYMOUS_CODING mGluR INTRON mGluR
4	962616	4_962616_SNP [dm3] 4_941990_SNP [dm6]	A	T	1.499e^-5	0.503	INTRON mGluR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10388922	3L_10388922_SNP [dm3] 3L_10395822_SNP [dm6]	C	G	1.511e^-5	0.503	INTERGENIC
3R	25837950	3R_25837950_SNP [dm3] 3R_30012228_SNP [dm6]	T	C	1.546e^-5	0.503	INTRON CG7920	TF binding site mE1_TFBS_cad
3L	1444508	3L_1444508_SNP [dm3] 3L_1444508_SNP [dm6]	G	A	1.571e^-5	0.503	INTRON Ptp61F
4	960207	4_960207_SNP [dm3] 4_939581_SNP [dm6]	G	A	1.584e^-5	0.503	INTRON mGluR
4	1163376	4_1163376_SNP [dm3] 4_1142750_SNP [dm6]	T	C	1.596e^-5	0.503	INTRON CG32017
4	947747	4_947747_INS [dm3] 4_927121_INS [dm6]	T	TT	1.637e^-5	0.504	INTRON eIF4G
4	975007	4_975007_SNP [dm3] 4_954381_SNP [dm6]	G	A	1.667e^-5	0.504	INTRON 4E-T
2R	17622164	2R_17622164_SNP [dm3] 2R_21734659_SNP [dm6]	G	A	1.709e^-5	0.504	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18923691	2R_18923691_SNP [dm3] 2R_23036168_SNP [dm6]	A	G	1.797e^-5	0.504	INTRON twi & 1 other	TF binding site mE1_TFBS_inv
4	1067002	4_1067002_SNP [dm3] 4_1046376_SNP [dm6]	C	T	1.806e^-5	0.504	INTRON CaMKII	transposable element FlyBase
4	1015712	4_1015712_SNP [dm3] 4_995086_SNP [dm6]	G	A	1.824e^-5	0.504	INTRON toy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26861958	3R_26861958_INS [dm3] 3R_31036236_INS [dm6]	G	GC	1.877e^-5	0.504	DOWNSTREAM CG33773 INTERGENIC
3R	26861930	3R_26861930_INS [dm3] 3R_31036208_INS [dm6]	G	GATTACCTGATCG...	1.904e^-5	0.504	DOWNSTREAM CG33773 INTERGENIC
3R	26862064	3R_26862064_SNP [dm3] 3R_31036342_SNP [dm6]	C	G	1.904e^-5	0.504	DOWNSTREAM CG33773 INTERGENIC
4	903318	4_903318_SNP [dm3] 4_882692_SNP [dm6]	C	T	1.926e^-5	0.504	NON_SYNONYMOUS_CODING unc-13 INTRON unc-13 EXON CR44029
3L	3031708	3L_3031708_SNP [dm3] 3L_3031708_SNP [dm6]	A	G	1.936e^-5	0.504	INTERGENIC
X	17346209	X_17346209_SNP [dm3] X_17452176_SNP [dm6]	T	A	2.038e^-5	0.504	SYNONYMOUS_CODING CG8568
4	842553	4_842553_INS [dm3] 4_821927_INS [dm6]	T	TTTTAAAAGTGTGGACGTGA...	2.099e^-5	0.504	INTRON Sox102F
4	904179	4_904179_SNP [dm3] 4_883553_SNP [dm6]	G	C	2.113e^-5	0.504	DOWNSTREAM CR44029 INTRON unc-13 EXON CR44029	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
4	904654	4_904654_SNP [dm3] 4_884028_SNP [dm6]	T	C	2.125e^-5	0.504	DOWNSTREAM CR44029 INTRON unc-13 EXON CR44029	TF binding site BDTNP1_TFBS_twi
4	959139	4_959139_SNP [dm3] 4_938513_SNP [dm6]	T	C	2.155e^-5	0.504	SYNONYMOUS_CODING mGluR
4	978162	4_978162_SNP [dm3] 4_957536_SNP [dm6]	A	G	2.159e^-5	0.504	NON_SYNONYMOUS_CODING 4E-T	TF binding site mE1_TFBS_sens
2L	12813157	2L_12813157_SNP [dm3] 2L_12813157_SNP [dm6]	C	T	2.201e^-5	0.504	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3031716	3L_3031716_SNP [dm3] 3L_3031716_SNP [dm6]	C	T	2.207e^-5	0.504	INTERGENIC
3R	16033539	3R_16033539_SNP [dm3] 3R_20207817_SNP [dm6]	C	T	2.247e^-5	0.504	DOWNSTREAM CG17199 INTRON Nlg4
3L	8115095	3L_8115095_SNP [dm3] 3L_8121995_SNP [dm6]	T	A	2.250e^-5	0.504	NON_SYNONYMOUS_CODING ldbr DOWNSTREAM msk	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1572463	3L_1572463_SNP [dm3] 3L_1572463_SNP [dm6]	G	A	2.261e^-5	0.504	SPLICE_SITE_REGION CG12004 INTRON CG12004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
4	939355	4_939355_SNP [dm3] 4_918729_SNP [dm6]	T	C	2.269e^-5	0.504	SYNONYMOUS_CODING eIF4G
X	4696353	X_4696353_SNP [dm3] X_4802320_SNP [dm6]	G	C	2.272e^-5	0.504	NON_SYNONYMOUS_CODING CG2861
4	945632	4_945632_SNP [dm3] 4_925006_SNP [dm6]	C	T	2.301e^-5	0.504	INTRON eIF4G
4	960702	4_960702_SNP [dm3] 4_940076_SNP [dm6]	A	C	2.312e^-5	0.504	INTRON mGluR	transposable element FlyBase
4	1214837	4_1214837_SNP [dm3] 4_1194211_SNP [dm6]	T	C	2.371e^-5	0.504	INTRON PIP4K
3L	9969208	3L_9969208_SNP [dm3] 3L_9976108_SNP [dm6]	C	T	2.375e^-5	0.504	INTRON dpr6
3R	17362928	3R_17362928_SNP [dm3] 3R_21537206_SNP [dm6]	T	C	2.398e^-5	0.504	INTERGENIC	TF binding site mE1_TFBS_cad
3L	3351403	3L_3351403_SNP [dm3] 3L_3351403_SNP [dm6]	A	T	2.409e^-5	0.504	INTRON kst	TF binding site mE1_TFBS_cad
4	1190136	4_1190136_SNP [dm3] 4_1169510_SNP [dm6]	C	T	2.479e^-5	0.508	DOWNSTREAM Kif3C INTERGENIC	transposable element FlyBase
4	920474	4_920474_SNP [dm3] 4_899848_SNP [dm6]	T	C	2.483e^-5	0.508	SYNONYMOUS_CODING unc-13
3L	13783484	3L_13783484_SNP [dm3] 3L_13790384_SNP [dm6]	A	G	2.575e^-5	0.521	INTRON bru-3
4	1183560	4_1183560_INS [dm3] 4_1162934_INS [dm6]	A	TCGGGACTTTTCT...	2.652e^-5	0.526	UPSTREAM CG32017 INTRON Kif3C	transposable element FlyBase
3R	14689012	3R_14689012_SNP [dm3] 3R_18863290_SNP [dm6]	T	G	2.658e^-5	0.526	INTERGENIC
3R	26344696	3R_26344696_SNP [dm3] 3R_30518974_SNP [dm6]	T	G	2.705e^-5	0.526	DOWNSTREAM jdp INTRON jdp
4	921497	4_921497_SNP [dm3] 4_900871_SNP [dm6]	C	G	2.715e^-5	0.526	SYNONYMOUS_CODING unc-13
4	798906	4_798906_DEL [dm3] 4_778280_DEL [dm6]	AA	A	2.772e^-5	0.529	DOWNSTREAM MED26 INTERGENIC
4	917004	4_917004_SNP [dm3] 4_896378_SNP [dm6]	A	C	2.797e^-5	0.529	INTRON unc-13
4	1120871	4_1120871_SNP [dm3] 4_1100245_SNP [dm6]	G	A	2.830e^-5	0.529	INTRON sv
4	955133	4_955133_SNP [dm3] 4_934507_SNP [dm6]	C	A	2.874e^-5	0.529	INTERGENIC	transposable element FlyBase
3R	24487091	3R_24487091_DEL [dm3] 3R_28661369_DEL [dm6]	TAT	T	2.888e^-5	0.529	INTERGENIC
2R	17302588	2R_17302588_SNP [dm3] 2R_21415083_SNP [dm6]	G	T	2.902e^-5	0.529	INTRON Sdc	TF binding site mE1_TFBS_inv
2R	12316459	2R_12316459_SNP [dm3] 2R_16428954_SNP [dm6]	C	A	3.059e^-5	0.551	INTRON Sema-2b	TF binding site BDTNP1_TFBS_twi
X	4696288	X_4696288_SNP [dm3] X_4802255_SNP [dm6]	C	T	3.124e^-5	0.551	SYNONYMOUS_CODING CG2861
3L	9969184	3L_9969184_SNP [dm3] 3L_9976084_SNP [dm6]	C	G	3.126e^-5	0.551	INTRON dpr6
3L	15706361	3L_15706361_SNP [dm3] 3L_15713261_SNP [dm6]	A	G	3.200e^-5	0.551	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
4	1014427	4_1014427_SNP [dm3] 4_993801_SNP [dm6]	A	C	3.206e^-5	0.551	INTRON toy	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
4	963763	4_963763_SNP [dm3] 4_943137_SNP [dm6]	A	G	3.275e^-5	0.551	SYNONYMOUS_CODING mGluR UTR_3_PRIME mGluR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
4	1111976	4_1111976_SNP [dm3] 4_1091350_SNP [dm6]	T	C	3.319e^-5	0.551	INTRON sv	transposable element FlyBase
4	974753	4_974753_SNP [dm3] 4_954127_SNP [dm6]	T	C	3.374e^-5	0.551	NON_SYNONYMOUS_CODING 4E-T
2R	16545244	2R_16545244_SNP [dm3] 2R_20657739_SNP [dm6]	T	A	3.413e^-5	0.551	UPSTREAM tRNA:CR30155 DOWNSTREAM tRNA:CR30211 INTRON Lrt	TF binding site mE1_TFBS_cad
3R	8718557	3R_8718557_SNP [dm3] 3R_12892835_SNP [dm6]	A	C	3.427e^-5	0.551	UTR_3_PRIME d-cup UPSTREAM CR44235
3R	6318481	3R_6318481_SNP [dm3] 3R_10492759_SNP [dm6]	T	G	3.465e^-5	0.551	INTERGENIC
3L	11353261	3L_11353261_SNP [dm3] 3L_11360161_SNP [dm6]	T	C	3.486e^-5	0.551	INTERGENIC
X	13044974	X_13044974_SNP [dm3] X_13150941_SNP [dm6]	A	C	3.533e^-5	0.551	INTRON CG32645	TF binding site mE1_TFBS_cad
3L	4274254	3L_4274254_SNP [dm3] 3L_4274254_SNP [dm6]	A	G	3.540e^-5	0.551	SYNONYMOUS_CODING CG1273
4	1216007	4_1216007_SNP [dm3] 4_1195381_SNP [dm6]	T	C	3.546e^-5	0.551	INTRON PIP4K
4	1204452	4_1204452_SNP [dm3] 4_1183826_SNP [dm6]	A	T	3.615e^-5	0.551	INTERGENIC	transposable element FlyBase
4	761743	4_761743_SNP [dm3] 4_741117_SNP [dm6]	T	C	3.644e^-5	0.551	INTRON bt
3R	19080928	3R_19080928_SNP [dm3] 3R_23255206_SNP [dm6]	C	A	3.651e^-5	0.551	UTR_3_PRIME wda DOWNSTREAM EloA
3R	4155013	3R_4155013_SNP [dm3] 3R_8329291_SNP [dm6]	C	A	3.653e^-5	0.551	INTRON Poxm
3R	9868293	3R_9868293_INS [dm3] 3R_14042571_INS [dm6]	C	TTTAT	3.656e^-5	0.551	INTERGENIC
3L	9969030	3L_9969030_SNP [dm3] 3L_9975930_SNP [dm6]	A	G	3.661e^-5	0.551	INTRON dpr6
3L	9969037	3L_9969037_SNP [dm3] 3L_9975937_SNP [dm6]	A	G	3.717e^-5	0.551	INTRON dpr6
4	978588	4_978588_INS [dm3] 4_957962_INS [dm6]	A	AAATA	3.794e^-5	0.551	INTRON 4E-T
4	915222	4_915222_SNP [dm3] 4_894596_SNP [dm6]	G	A	3.834e^-5	0.551	INTRON unc-13
4	983467	4_983467_SNP [dm3] 4_962841_SNP [dm6]	G	T	3.854e^-5	0.551	DOWNSTREAM CR44030 INTRON fuss
3L	9969092	3L_9969092_SNP [dm3] 3L_9975992_SNP [dm6]	A	T	3.889e^-5	0.551	INTRON dpr6
3L	9969093	3L_9969093_SNP [dm3] 3L_9975993_SNP [dm6]	G	A	3.889e^-5	0.551	INTRON dpr6
3L	5426855	3L_5426855_SNP [dm3] 3L_5433755_SNP [dm6]	T	G	3.922e^-5	0.551	SYNONYMOUS_CODING CG34391
3R	14031355	3R_14031355_SNP [dm3] 3R_18205633_SNP [dm6]	T	G	3.930e^-5	0.551	INTRON CG7985
2R	19064711	2R_19064711_SNP [dm3] 2R_23177188_SNP [dm6]	C	T	3.937e^-5	0.551	INTRON CG34371
4	1101284	4_1101284_SNP [dm3] 4_1080658_SNP [dm6]	A	G	3.937e^-5	0.551	NON_SYNONYMOUS_CODING Actbeta
4	1015402	4_1015402_SNP [dm3] 4_994776_SNP [dm6]	C	G	3.971e^-5	0.551	INTRON toy	TF binding site BDTNP1_TFBS_dl
2R	18033575	2R_18033575_SNP [dm3] 2R_22146070_SNP [dm6]	G	A	4.017e^-5	0.554	INTRON a
2R	10964548	2R_10964548_SNP [dm3] 2R_15077043_SNP [dm6]	A	T	4.107e^-5	0.562	INTERGENIC
2R	17296908	2R_17296908_SNP [dm3] 2R_21409403_SNP [dm6]	T	G	4.222e^-5	0.571	INTRON Sdc
2R	13024917	2R_13024917_SNP [dm3] 2R_17137412_SNP [dm6]	C	T	4.267e^-5	0.571	NON_SYNONYMOUS_CODING CG11395 SPLICE_SITE_REGION CG11395 DOWNSTREAM Gbp
2R	13024935	2R_13024935_SNP [dm3] 2R_17137430_SNP [dm6]	A	T	4.267e^-5	0.571	DOWNSTREAM Gbp INTRON CG11395
3L	18388327	3L_18388327_SNP [dm3] 3L_18395227_SNP [dm6]	G	A	4.351e^-5	0.572	INTERGENIC
2L	9486072	2L_9486072_DEL [dm3] 2L_9486072_DEL [dm6]	AA	A	4.383e^-5	0.572	INTERGENIC
3L	1750163	3L_1750163_SNP [dm3] 3L_1750163_SNP [dm6]	G	A	4.591e^-5	0.572	SYNONYMOUS_CODING CG13921	TF binding site mE1_TFBS_chinmo
3L	9969203	3L_9969203_SNP [dm3] 3L_9976103_SNP [dm6]	T	A	4.612e^-5	0.572	INTRON dpr6
3R	26862015	3R_26862015_SNP [dm3] 3R_31036293_SNP [dm6]	A	T	4.650e^-5	0.572	DOWNSTREAM CG33773 INTERGENIC
3R	18529176	3R_18529176_SNP [dm3] 3R_22703454_SNP [dm6]	C	T	4.656e^-5	0.572	SYNONYMOUS_CODING CG6972 DOWNSTREAM CG13842	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	13024929	2R_13024929_SNP [dm3] 2R_17137424_SNP [dm6]	A	C	4.780e^-5	0.572	DOWNSTREAM Gbp INTRON CG11395
X	8696608	X_8696608_SNP [dm3] X_8802575_SNP [dm6]	G	A	4.802e^-5	0.572	INTRON Lim1
3L	10388257	3L_10388257_SNP [dm3] 3L_10395157_SNP [dm6]	T	A	4.825e^-5	0.572	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11396506	3L_11396506_SNP [dm3] 3L_11403406_SNP [dm6]	A	G	4.855e^-5	0.572	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
4	1015374	4_1015374_SNP [dm3] 4_994748_SNP [dm6]	C	T	4.943e^-5	0.572	INTRON toy	TF binding site BDTNP1_TFBS_dl
2R	13024981	2R_13024981_DEL [dm3] 2R_17137476_DEL [dm6]	TT	C	4.947e^-5	0.572	DOWNSTREAM Gbp INTRON CG11395
2R	18940178	2R_18940178_SNP [dm3] 2R_23052655_SNP [dm6]	G	T	4.978e^-5	0.572	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
4	1136217	4_1136217_SNP [dm3] 4_1115591_SNP [dm6]	A	G	4.980e^-5	0.572	UTR_3_PRIME Cals
3L	10388284	3L_10388284_SNP [dm3] 3L_10395184_SNP [dm6]	T	C	5.020e^-5	0.572	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	2302693	X_2302693_SNP [dm3] X_2408660_SNP [dm6]	T	C	5.032e^-5	0.572	DOWNSTREAM CG12496 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	16545234	2R_16545234_SNP [dm3] 2R_20657729_SNP [dm6]	T	A	5.037e^-5	0.572	UPSTREAM tRNA:CR30155 DOWNSTREAM tRNA:CR30211 INTRON Lrt	TF binding site mE1_TFBS_cad
4	842608	4_842608_SNP [dm3] 4_821982_SNP [dm6]	C	T	5.039e^-5	0.572	INTRON Sox102F
2R	19131298	2R_19131298_SNP [dm3] 2R_23243775_SNP [dm6]	A	G	5.043e^-5	0.572	DOWNSTREAM yip3 INTERGENIC
4	1011649	4_1011649_SNP [dm3] 4_991023_SNP [dm6]	C	A	5.056e^-5	0.572	INTRON toy	regulatory region REDfly_CRMs transposable element FlyBase
4	965726	4_965726_SNP [dm3] 4_945100_SNP [dm6]	A	T	5.062e^-5	0.572	DOWNSTREAM mGluR INTRON mGluR	transposable element FlyBase
4	735329	4_735329_INS [dm3] 4_714703_INS [dm6]	C	CAAAATCACCATTGGTAATA...	5.098e^-5	0.572	INTRON ey
4	842551	4_842551_SNP [dm3] 4_821925_SNP [dm6]	G	T	5.169e^-5	0.572	INTRON Sox102F
2R	15930955	2R_15930955_SNP [dm3] 2R_20043450_SNP [dm6]	C	A	5.189e^-5	0.572	INTERGENIC	TF binding site mE1_TFBS_cad
3R	19072412	3R_19072412_SNP [dm3] 3R_23246690_SNP [dm6]	T	C	5.205e^-5	0.572	INTRON CG4467	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1750754	3L_1750754_SNP [dm3] 3L_1750754_SNP [dm6]	C	T	5.254e^-5	0.572	SYNONYMOUS_CODING CG13921	TF binding site mE1_TFBS_chinmo
3L	10712189	3L_10712189_DEL [dm3] 3L_10719089_DEL [dm6]	AT	G	5.288e^-5	0.572	INTERGENIC
4	645875	4_645875_SNP [dm3] 4_625249_SNP [dm6]	A	T	5.349e^-5	0.572	NON_SYNONYMOUS_CODING mav UPSTREAM mir-954	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
4	971174	4_971174_SNP [dm3] 4_950548_SNP [dm6]	T	G	5.466e^-5	0.572	DOWNSTREAM 4E-T INTERGENIC	transposable element FlyBase
2R	19717550	2R_19717550_SNP [dm3] 2R_23830027_SNP [dm6]	G	T	5.509e^-5	0.572	NON_SYNONYMOUS_CODING CG5549
2L	3704677	2L_3704677_INS [dm3] 2L_3704677_INS [dm6]	G	GCA	5.512e^-5	0.572	DOWNSTREAM CG2816 INTRON CG31778
4	863619	4_863619_SNP [dm3] 4_842993_SNP [dm6]	C	T	5.538e^-5	0.572	UPSTREAM CR33797 INTRON fd102C
X	17346176	X_17346176_SNP [dm3] X_17452143_SNP [dm6]	C	G	5.600e^-5	0.572	SYNONYMOUS_CODING CG8568
3R	11944156	3R_11944156_SNP [dm3] 3R_16118434_SNP [dm6]	T	A	5.613e^-5	0.572	INTRON Sb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
4	1020476	4_1020476_SNP [dm3] 4_999850_SNP [dm6]	C	T	5.627e^-5	0.572	INTRON toy	transposable element FlyBase
4	1008012	4_1008012_SNP [dm3] 4_987386_SNP [dm6]	G	C	5.749e^-5	0.572	INTERGENIC	regulatory region REDfly_CRMs
2L	8043395	2L_8043395_SNP [dm3] 2L_8043395_SNP [dm6]	G	A	5.760e^-5	0.572	UPSTREAM CG7466 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22659336	3R_22659336_SNP [dm3] 3R_26833614_SNP [dm6]	G	A	5.766e^-5	0.572	INTRON Tl
2L	16761786	2L_16761786_SNP [dm3] 2L_16761786_SNP [dm6]	A	T	5.781e^-5	0.572	INTERGENIC	regulatory region REDfly_CRMs
4	905876	4_905876_SNP [dm3] 4_885250_SNP [dm6]	A	G	5.788e^-5	0.572	DOWNSTREAM CR44029 INTRON unc-13
X	10861646	X_10861646_SNP [dm3] X_10967613_SNP [dm6]	C	T	5.807e^-5	0.572	UPSTREAM C901 DOWNSTREAM CG42339 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
4	925536	4_925536_SNP [dm3] 4_904910_SNP [dm6]	C	A	5.852e^-5	0.572	UTR_5_PRIME unc-13 UPSTREAM unc-13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
4	1029121	4_1029121_SNP [dm3] 4_1008495_SNP [dm6]	G	A	5.855e^-5	0.572	DOWNSTREAM toy INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
4	1122770	4_1122770_SNP [dm3] 4_1102144_SNP [dm6]	T	C	5.855e^-5	0.572	INTRON sv
4	1191630	4_1191630_SNP [dm3] 4_1171004_SNP [dm6]	T	G	5.855e^-5	0.572	INTERGENIC
4	960900	4_960900_SNP [dm3] 4_940274_SNP [dm6]	C	T	5.855e^-5	0.572	SYNONYMOUS_CODING mGluR INTRON mGluR
3L	9969158	3L_9969158_SNP [dm3] 3L_9976058_SNP [dm6]	C	G	5.856e^-5	0.572	INTRON dpr6
3L	9969146	3L_9969146_DEL [dm3] 3L_9976046_DEL [dm6]	CTC	C	5.889e^-5	0.572	INTRON dpr6
3R	4786979	3R_4786979_SNP [dm3] 3R_8961257_SNP [dm6]	G	C	5.950e^-5	0.572	INTRON CG11966
2R	5072878	2R_5072878_SNP [dm3] 2R_9185373_SNP [dm6]	C	A	6.033e^-5	0.572	NON_SYNONYMOUS_CODING ltd DOWNSTREAM CR44284 INTRON ltd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4155012	3R_4155012_SNP [dm3] 3R_8329290_SNP [dm6]	A	T	6.039e^-5	0.572	INTRON Poxm
3L	4357029	3L_4357029_SNP [dm3] 3L_4357029_SNP [dm6]	C	G	6.067e^-5	0.572	INTRON Cip4
4	1020540	4_1020540_SNP [dm3] 4_999914_SNP [dm6]	T	A	6.081e^-5	0.572	INTRON toy	transposable element FlyBase
3L	9969063	3L_9969063_SNP [dm3] 3L_9975963_SNP [dm6]	G	A	6.104e^-5	0.572	INTRON dpr6
3L	1750106	3L_1750106_SNP [dm3] 3L_1750106_SNP [dm6]	C	T	6.128e^-5	0.572	SYNONYMOUS_CODING CG13921	TF binding site mE1_TFBS_chinmo
2R	1314903	2R_1314903_SNP [dm3] 2R_5427398_SNP [dm6]	G	C	6.141e^-5	0.572	INTRON laccase2
3L	20087347	3L_20087347_SNP [dm3] 3L_20094247_SNP [dm6]	T	C	6.142e^-5	0.572	INTERGENIC
3R	9382379	3R_9382379_SNP [dm3] 3R_13556657_SNP [dm6]	T	A	6.143e^-5	0.572	INTERGENIC
3L	9969183	3L_9969183_SNP [dm3] 3L_9976083_SNP [dm6]	G	T	6.153e^-5	0.572	INTRON dpr6
3R	16344059	3R_16344059_SNP [dm3] 3R_20518337_SNP [dm6]	A	G	6.158e^-5	0.572	INTERGENIC
2R	14131151	2R_14131151_SNP [dm3] 2R_18243646_SNP [dm6]	G	T	6.166e^-5	0.572	INTERGENIC	TF binding site mE1_TFBS_inv
3R	9389095	3R_9389095_SNP [dm3] 3R_13563373_SNP [dm6]	G	T	6.179e^-5	0.572	INTERGENIC
3R	22423597	3R_22423597_SNP [dm3] 3R_26597875_SNP [dm6]	C	T	6.237e^-5	0.572	SYNONYMOUS_CODING scrib INTRON scrib
3R	6426741	3R_6426741_SNP [dm3] 3R_10601019_SNP [dm6]	G	A	6.241e^-5	0.572	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17725686	2R_17725686_SNP [dm3] 2R_21838181_SNP [dm6]	C	T	6.383e^-5	0.579	SYNONYMOUS_CODING CG4372
4	1107540	4_1107540_SNP [dm3] 4_1086914_SNP [dm6]	A	T	6.422e^-5	0.579	INTERGENIC	regulatory region REDfly_CRMs
4	941113	4_941113_SNP [dm3] 4_920487_SNP [dm6]	C	T	6.432e^-5	0.579	SYNONYMOUS_CODING eIF4G
3R	25458779	3R_25458779_SNP [dm3] 3R_29633057_SNP [dm6]	A	T	6.438e^-5	0.579	INTRON Dop1R2	TF binding site mE1_TFBS_HSA
3L	9216022	3L_9216022_SNP [dm3] 3L_9222922_SNP [dm6]	G	A	6.607e^-5	0.591	DOWNSTREAM CR45408 INTERGENIC
3L	7251195	3L_7251195_SNP [dm3] 3L_7258095_SNP [dm6]	T	C	6.668e^-5	0.594	INTRON CG14830
3R	17761394	3R_17761394_SNP [dm3] 3R_21935672_SNP [dm6]	C	T	6.741e^-5	0.595	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
4	949731	4_949731_SNP [dm3] 4_929105_SNP [dm6]	T	A	6.801e^-5	0.595	INTRON eIF4G
3L	6805284	3L_6805284_SNP [dm3] 3L_6812184_SNP [dm6]	G	A	6.823e^-5	0.595	INTERGENIC
2L	8043107	2L_8043107_SNP [dm3] 2L_8043107_SNP [dm6]	C	T	6.871e^-5	0.595	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9969107	3L_9969107_SNP [dm3] 3L_9976007_SNP [dm6]	G	A	6.873e^-5	0.595	INTRON dpr6
4	1138604	4_1138604_SNP [dm3] 4_1117978_SNP [dm6]	A	C	6.888e^-5	0.595	NON_SYNONYMOUS_CODING Cals
3L	10388266	3L_10388266_SNP [dm3] 3L_10395166_SNP [dm6]	G	C	6.912e^-5	0.595	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	20201679	3R_20201679_DEL [dm3] 3R_24375957_DEL [dm6]	AA	A	6.984e^-5	0.599	UPSTREAM CG17781 & 1 other INTERGENIC
3R	3327012	3R_3327012_SNP [dm3] 3R_7501290_SNP [dm6]	G	T	7.103e^-5	0.6	SYNONYMOUS_CODING CG1287 INTRON alpha-Est9	TF binding site mE1_TFBS_cad
2L	8043241	2L_8043241_SNP [dm3] 2L_8043241_SNP [dm6]	A	C	7.143e^-5	0.6	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
4	907416	4_907416_SNP [dm3] 4_886790_SNP [dm6]	T	C	7.159e^-5	0.6	INTRON unc-13
2R	18550834	2R_18550834_SNP [dm3] 2R_22663329_SNP [dm6]	A	T	7.162e^-5	0.6	UPSTREAM CG4250 DOWNSTREAM CG42566 INTERGENIC
2R	6555381	2R_6555381_SNP [dm3] 2R_10667876_SNP [dm6]	C	T	7.205e^-5	0.6	INTERGENIC
4	942317	4_942317_SNP [dm3] 4_921691_SNP [dm6]	C	T	7.215e^-5	0.6	INTRON eIF4G	transposable element FlyBase
4	851782	4_851782_SNP [dm3] 4_831156_SNP [dm6]	A	G	7.258e^-5	0.6	INTRON Sox102F
4	1215320	4_1215320_SNP [dm3] 4_1194694_SNP [dm6]	A	T	7.305e^-5	0.6	INTRON PIP4K	transposable element FlyBase
3R	17761038	3R_17761038_DEL [dm3] 3R_21935316_DEL [dm6]	AA	A	7.326e^-5	0.6	INTERGENIC
3L	9969150	3L_9969150_SNP [dm3] 3L_9976050_SNP [dm6]	C	A	7.327e^-5	0.6	INTRON dpr6
2R	15920764	2R_15920764_SNP [dm3] 2R_20033259_SNP [dm6]	A	T	7.353e^-5	0.6	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	20167772	3L_20167772_SNP [dm3] 3L_20174672_SNP [dm6]	G	T	7.436e^-5	0.604	INTRON CG42674
3R	9877618	3R_9877618_SNP [dm3] 3R_14051896_SNP [dm6]	C	T	7.502e^-5	0.604	INTERGENIC	TF binding site mE1_TFBS_HSA
X	5682414	X_5682414_SNP [dm3] X_5788381_SNP [dm6]	G	T	7.503e^-5	0.604	UTR_3_PRIME CG42699
3L	8577288	3L_8577288_SNP [dm3] 3L_8584188_SNP [dm6]	A	G	7.539e^-5	0.605	INTRON CG43078
3R	10596566	3R_10596566_SNP [dm3] 3R_14770844_SNP [dm6]	T	C	7.630e^-5	0.606	INTRON jvl
2L	17181454	2L_17181454_SNP [dm3] 2L_17181454_SNP [dm6]	T	A	7.641e^-5	0.606	UPSTREAM CG31750 INTRON Gr36c
4	935280	4_935280_SNP [dm3] 4_914654_SNP [dm6]	A	G	7.653e^-5	0.606	DOWNSTREAM eIF4G INTERGENIC	transposable element FlyBase
2L	9079208	2L_9079208_SNP [dm3] 2L_9079208_SNP [dm6]	T	A	7.705e^-5	0.607	INTERGENIC
3L	3680460	3L_3680460_SNP [dm3] 3L_3680460_SNP [dm6]	A	T	7.918e^-5	0.62	INTERGENIC	TF binding site mE1_TFBS_cad
3R	25459723	3R_25459723_SNP [dm3] 3R_29634001_SNP [dm6]	A	T	7.987e^-5	0.62	INTRON Dop1R2
3L	10383619	3L_10383619_SNP [dm3] 3L_10390519_SNP [dm6]	T	A	7.991e^-5	0.62	INTERGENIC
2L	8353554	2L_8353554_SNP [dm3] 2L_8353554_SNP [dm6]	C	T	8.042e^-5	0.62	INTRON Mur29B	TF binding site mE1_TFBS_sens
3R	9879509	3R_9879509_SNP [dm3] 3R_14053787_SNP [dm6]	T	A	8.088e^-5	0.62	INTERGENIC
3R	22311978	3R_22311978_SNP [dm3] 3R_26486256_SNP [dm6]	A	T	8.134e^-5	0.62	INTRON plum
3L	11396505	3L_11396505_SNP [dm3] 3L_11403405_SNP [dm6]	T	C	8.161e^-5	0.62	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
X	12617895	X_12617895_SNP [dm3] X_12723862_SNP [dm6]	C	A	8.173e^-5	0.62	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl
3L	5260475	3L_5260475_SNP [dm3] 3L_5267375_SNP [dm6]	A	T	8.200e^-5	0.62	INTRON shep
3L	2171436	3L_2171436_SNP [dm3] 3L_2171436_SNP [dm6]	C	T	8.203e^-5	0.62	UPSTREAM CG5704 DOWNSTREAM CR15821 INTERGENIC
3L	1572476	3L_1572476_SNP [dm3] 3L_1572476_SNP [dm6]	T	G	8.281e^-5	0.624	INTRON CG12004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15930969	2R_15930969_SNP [dm3] 2R_20043464_SNP [dm6]	T	C	8.329e^-5	0.625	INTERGENIC	TF binding site mE1_TFBS_cad
2R	17046464	2R_17046464_SNP [dm3] 2R_21158959_SNP [dm6]	A	G	8.683e^-5	0.643	UPSTREAM CG30389 INTRON CG30389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13189443	2R_13189443_SNP [dm3] 2R_17301938_SNP [dm6]	G	T	8.712e^-5	0.643	INTRON mbl
2R	13189446	2R_13189446_SNP [dm3] 2R_17301941_SNP [dm6]	G	T	8.712e^-5	0.643	INTRON mbl
3L	4784867	3L_4784867_SNP [dm3] 3L_4784867_SNP [dm6]	T	C	8.718e^-5	0.643	INTRON RhoGEF64C
3L	10712202	3L_10712202_SNP [dm3] 3L_10719102_SNP [dm6]	A	T	8.741e^-5	0.643	INTERGENIC
X	17346182	X_17346182_SNP [dm3] X_17452149_SNP [dm6]	T	C	8.782e^-5	0.643	SYNONYMOUS_CODING CG8568
3R	17362949	3R_17362949_SNP [dm3] 3R_21537227_SNP [dm6]	G	A	8.866e^-5	0.644	INTERGENIC	TF binding site mE1_TFBS_cad
3R	17362962	3R_17362962_SNP [dm3] 3R_21537240_SNP [dm6]	G	A	8.866e^-5	0.644	INTERGENIC	TF binding site mE1_TFBS_cad
4	610419	4_610419_SNP [dm3] 4_589793_SNP [dm6]	G	T	8.931e^-5	0.647	DOWNSTREAM CG1909 INTERGENIC
X	10783646	X_10783646_SNP [dm3] X_10889613_SNP [dm6]	A	T	8.983e^-5	0.648	INTRON Ork1
3R	14703990	3R_14703990_SNP [dm3] 3R_18878268_SNP [dm6]	G	C	9.147e^-5	0.657	INTERGENIC
3R	15568327	3R_15568327_SNP [dm3] 3R_19742605_SNP [dm6]	G	T	9.288e^-5	0.658	INTRON GluClalpha
4	1275710	4_1275710_SNP [dm3] 4_1271984_SNP [dm6]	T	G	9.293e^-5	0.658	DOWNSTREAM Caps
3R	19080706	3R_19080706_SNP [dm3] 3R_23254984_SNP [dm6]	C	T	9.325e^-5	0.658	UTR_3_PRIME EloA DOWNSTREAM wda
3R	19072418	3R_19072418_SNP [dm3] 3R_23246696_SNP [dm6]	G	A	9.383e^-5	0.658	INTRON CG4467	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8091993	X_8091993_SNP [dm3] X_8197960_SNP [dm6]	C	G	9.383e^-5	0.658	INTRON sdt
3R	15826518	3R_15826518_SNP [dm3] 3R_20000796_SNP [dm6]	A	C	9.391e^-5	0.658	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
3L	10653107	3L_10653107_SNP [dm3] 3L_10660007_SNP [dm6]	T	C	9.462e^-5	0.658	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5300161	X_5300161_SNP [dm3] X_5406128_SNP [dm6]	T	C	9.475e^-5	0.658	DOWNSTREAM SK INTRON NAAT1
3R	24485001	3R_24485001_SNP [dm3] 3R_28659279_SNP [dm6]	A	G	9.519e^-5	0.658	INTERGENIC
2R	13025025	2R_13025025_SNP [dm3] 2R_17137520_SNP [dm6]	T	G	9.548e^-5	0.658	NON_SYNONYMOUS_CODING CG11395 DOWNSTREAM Gbp
2R	13382078	2R_13382078_SNP [dm3] 2R_17494573_SNP [dm6]	G	A	9.580e^-5	0.658	NON_SYNONYMOUS_CODING CG30103
2R	13382079	2R_13382079_SNP [dm3] 2R_17494574_SNP [dm6]	G	A	9.580e^-5	0.658	NON_SYNONYMOUS_CODING CG30103
3R	15847862	3R_15847862_SNP [dm3] 3R_20022140_SNP [dm6]	C	T	9.658e^-5	0.661	UPSTREAM CG4433 INTRON psidin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	3031683	3L_3031683_SNP [dm3] 3L_3031683_SNP [dm6]	T	A	9.725e^-5	0.661	INTERGENIC
2R	11309896	2R_11309896_SNP [dm3] 2R_15422391_SNP [dm6]	G	T	9.733e^-5	0.661	DOWNSTREAM CG30472 INTRON CG43729	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18937005	2R_18937005_DEL [dm3] 2R_23049482_DEL [dm6]	AAGCGAAT	A	9.784e^-5	0.662	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7262487	3L_7262487_SNP [dm3] 3L_7269387_SNP [dm6]	T	C	9.856e^-5	0.662	SYNONYMOUS_CODING unc-13-4A
3R	14854249	3R_14854249_SNP [dm3] 3R_19028527_SNP [dm6]	C	A	9.863e^-5	0.662	NON_SYNONYMOUS_CODING gatA UPSTREAM P5cr DOWNSTREAM NP15.6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19944395	3R_19944395_DEL [dm3] 3R_24118673_DEL [dm6]	TT	T	9.989e^-5	0.662	UTR_5_PRIME Rootletin INTRON Rootletin
3R	17937434	3R_17937434_SNP [dm3] 3R_22111712_SNP [dm6]	G	A	9.994e^-5	0.662	INTERGENIC
2R	18936997	2R_18936997_SNP [dm3] 2R_23049474_SNP [dm6]	T	A	1.001e^-4	0.662	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13524107	2R_13524107_DEL [dm3] 2R_17636602_DEL [dm6]	AATA	A	1.008e^-4	0.662	INTRON CG10936
X	5300167	X_5300167_SNP [dm3] X_5406134_SNP [dm6]	A	G	1.011e^-4	0.662	DOWNSTREAM SK INTRON NAAT1
X	20234576	X_20234576_SNP [dm3] X_20363549_SNP [dm6]	C	T	1.012e^-4	0.662	INTERGENIC
4	747586	4_747586_SNP [dm3] 4_726960_SNP [dm6]	G	A	1.013e^-4	0.662	SPLICE_SITE_REGION bt SYNONYMOUS_CODING bt INTRON bt
3R	18449107	3R_18449107_SNP [dm3] 3R_22623385_SNP [dm6]	T	C	1.017e^-4	0.662	INTRON loco
2R	14531985	2R_14531985_SNP [dm3] 2R_18644480_SNP [dm6]	G	T	1.018e^-4	0.662	INTRON SP2637	TF binding site BDTNP1_TFBS_da
4	852025	4_852025_SNP [dm3] 4_831399_SNP [dm6]	G	C	1.028e^-4	0.667	INTRON Sox102F
X	17216280	X_17216280_SNP [dm3] X_17322247_SNP [dm6]	C	A	1.050e^-4	0.678	INTRON B-H2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA
3L	3513233	3L_3513233_SNP [dm3] 3L_3513233_SNP [dm6]	A	G	1.058e^-4	0.681	UPSTREAM ImpE2 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6149517	3L_6149517_SNP [dm3] 3L_6156417_SNP [dm6]	C	T	1.063e^-4	0.682	DOWNSTREAM CG13297 INTERGENIC
3R	15828101	3R_15828101_SNP [dm3] 3R_20002379_SNP [dm6]	A	T	1.073e^-4	0.685	INTRON Hs6st	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9389349	3R_9389349_SNP [dm3] 3R_13563627_SNP [dm6]	G	T	1.075e^-4	0.685	INTERGENIC
2R	15930979	2R_15930979_SNP [dm3] 2R_20043474_SNP [dm6]	A	T	1.084e^-4	0.685	INTERGENIC	TF binding site mE1_TFBS_cad
4	748295	4_748295_SNP [dm3] 4_727669_SNP [dm6]	T	C	1.085e^-4	0.685	INTRON bt
3R	5491067	3R_5491067_SNP [dm3] 3R_9665345_SNP [dm6]	G	C	1.092e^-4	0.685	INTRON CG9492
3L	15874203	3L_15874203_SNP [dm3] 3L_15881103_SNP [dm6]	A	C	1.095e^-4	0.685	INTRON pHCl
2R	15389937	2R_15389937_SNP [dm3] 2R_19502432_SNP [dm6]	A	C	1.097e^-4	0.685	UPSTREAM CG11007 INTERGENIC
2R	13025055	2R_13025055_SNP [dm3] 2R_17137550_SNP [dm6]	T	A	1.097e^-4	0.685	NON_SYNONYMOUS_CODING CG11395 DOWNSTREAM Gbp
3L	7262457	3L_7262457_SNP [dm3] 3L_7269357_SNP [dm6]	A	G	1.103e^-4	0.686	SYNONYMOUS_CODING unc-13-4A
2L	5857935	2L_5857935_SNP [dm3] 2L_5857935_SNP [dm6]	G	A	1.121e^-4	0.686	INTERGENIC
2R	17772173	2R_17772173_SNP [dm3] 2R_21884668_SNP [dm6]	T	C	1.121e^-4	0.686	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
4	1045538	4_1045538_INS [dm3] 4_1024912_INS [dm6]	T	TT	1.127e^-4	0.686	INTRON PlexA	transposable element FlyBase
3L	15770615	3L_15770615_SNP [dm3] 3L_15777515_SNP [dm6]	A	G	1.129e^-4	0.686	INTERGENIC
2R	17616639	2R_17616639_SNP [dm3] 2R_21729134_SNP [dm6]	G	A	1.129e^-4	0.686	UPSTREAM CR44750 INTERGENIC	TF binding site mE1_TFBS_cad
3R	16565040	3R_16565040_SNP [dm3] 3R_20739318_SNP [dm6]	C	T	1.130e^-4	0.686	UPSTREAM CG17267 & 1 other DOWNSTREAM cdc2c INTERGENIC
X	4678977	X_4678977_SNP [dm3] X_4784944_SNP [dm6]	T	C	1.132e^-4	0.686	SYNONYMOUS_CODING CG6978	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
4	949796	4_949796_INS [dm3] 4_929170_INS [dm6]	A	ATTAATA	1.133e^-4	0.686	INTRON eIF4G
3L	11804001	3L_11804001_SNP [dm3] 3L_11810901_SNP [dm6]	A	T	1.147e^-4	0.689	SYNONYMOUS_CODING CG42255
4	904126	4_904126_SNP [dm3] 4_883500_SNP [dm6]	C	A	1.147e^-4	0.689	DOWNSTREAM CR44029 INTRON unc-13 EXON CR44029	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2688720	2L_2688720_SNP [dm3] 2L_2688720_SNP [dm6]	G	A	1.149e^-4	0.689	INTRON CG31690
2R	13182256	2R_13182256_SNP [dm3] 2R_17294751_SNP [dm6]	C	T	1.155e^-4	0.69	INTRON mbl
2R	11468242	2R_11468242_SNP [dm3] 2R_15580737_SNP [dm6]	C	G	1.171e^-4	0.69	INTERGENIC
3L	9969039	3L_9969039_INS [dm3] 3L_9975939_INS [dm6]	A	AG	1.173e^-4	0.69	INTRON dpr6
2R	17772105	2R_17772105_SNP [dm3] 2R_21884600_SNP [dm6]	C	T	1.174e^-4	0.69	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25380729	3R_25380729_DEL [dm3] 3R_29555007_DEL [dm6]	AA	G	1.182e^-4	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3L	19212081	3L_19212081_SNP [dm3] 3L_19218981_SNP [dm6]	G	A	1.182e^-4	0.69	INTRON fz2
3L	19226619	3L_19226619_SNP [dm3] 3L_19233519_SNP [dm6]	A	T	1.183e^-4	0.69	INTRON fz2
4	954995	4_954995_SNP [dm3] 4_934369_SNP [dm6]	C	A	1.189e^-4	0.69	INTERGENIC	transposable element FlyBase
2L	9079277	2L_9079277_SNP [dm3] 2L_9079277_SNP [dm6]	C	A	1.191e^-4	0.69	INTERGENIC
3R	9760653	3R_9760653_SNP [dm3] 3R_13934931_SNP [dm6]	A	G	1.194e^-4	0.69	INTERGENIC
2L	4339098	2L_4339098_SNP [dm3] 2L_4339098_SNP [dm6]	C	T	1.200e^-4	0.69	UTR_5_PRIME Atet INTRON Atet	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	12154665	2L_12154665_SNP [dm3] 2L_12154665_SNP [dm6]	C	G	1.200e^-4	0.69	INTRON CG31760
2R	16545238	2R_16545238_SNP [dm3] 2R_20657733_SNP [dm6]	T	G	1.203e^-4	0.69	UPSTREAM tRNA:CR30155 DOWNSTREAM tRNA:CR30211 INTRON Lrt	TF binding site mE1_TFBS_cad
3L	1751003	3L_1751003_SNP [dm3] 3L_1751003_SNP [dm6]	G	C	1.209e^-4	0.69	SYNONYMOUS_CODING CG13921	TF binding site mE1_TFBS_chinmo
2R	5070953	2R_5070953_SNP [dm3] 2R_9183448_SNP [dm6]	G	A	1.214e^-4	0.69	INTRON ltd EXON CR44284	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA
3L	16322917	3L_16322917_SNP [dm3] 3L_16329817_SNP [dm6]	A	G	1.221e^-4	0.69	UTR_5_PRIME CG33061 DOWNSTREAM CG13058
4	871224	4_871224_SNP [dm3] 4_850598_SNP [dm6]	G	C	1.226e^-4	0.69	UPSTREAM CR45123 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3337859	3L_3337859_DEL [dm3] 3L_3337859_DEL [dm6]	AGAGAAGA	A	1.226e^-4	0.69	INTRON kst	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18647078	2R_18647078_SNP [dm3] 2R_22759573_SNP [dm6]	T	A	1.230e^-4	0.69	DOWNSTREAM CR30267 INTRON CG42260
2R	18641274	2R_18641274_SNP [dm3] 2R_22753769_SNP [dm6]	G	C	1.235e^-4	0.69	INTRON CG42260	TF binding site mE1_TFBS_chinmo
3R	12471221	3R_12471221_SNP [dm3] 3R_16645499_SNP [dm6]	T	G	1.239e^-4	0.69	NON_SYNONYMOUS_CODING CG10324 DOWNSTREAM CG10326
3R	12471232	3R_12471232_SNP [dm3] 3R_16645510_SNP [dm6]	T	C	1.239e^-4	0.69	SYNONYMOUS_CODING CG10324 DOWNSTREAM CG10326
3R	2190474	3R_2190474_INS [dm3] 3R_6364752_INS [dm6]	G	GG	1.243e^-4	0.69	UTR_3_PRIME CG42724 DOWNSTREAM CG42724 INTRON CG42724
X	6743364	X_6743364_SNP [dm3] X_6849331_SNP [dm6]	G	A	1.245e^-4	0.69	SYNONYMOUS_CODING Cht11 UPSTREAM CG4558	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
4	1131714	4_1131714_SNP [dm3] 4_1111088_SNP [dm6]	A	G	1.249e^-4	0.69	DOWNSTREAM sv INTRON sv
3R	10042451	3R_10042451_SNP [dm3] 3R_14216729_SNP [dm6]	C	G	1.249e^-4	0.69	INTRON CG9649
3L	8019230	3L_8019230_SNP [dm3] 3L_8026130_SNP [dm6]	A	T	1.265e^-4	0.69	INTRON nmo
3L	5363828	3L_5363828_SNP [dm3] 3L_5370728_SNP [dm6]	G	A	1.268e^-4	0.69	DOWNSTREAM CR44515 & 1 other INTERGENIC
3L	10712138	3L_10712138_SNP [dm3] 3L_10719038_SNP [dm6]	C	A	1.268e^-4	0.69	INTERGENIC
3L	10712137	3L_10712137_SNP [dm3] 3L_10719037_SNP [dm6]	T	A	1.274e^-4	0.69	INTERGENIC
3R	20201691	3R_20201691_SNP [dm3] 3R_24375969_SNP [dm6]	C	A	1.286e^-4	0.69	UPSTREAM CG17781 & 1 other INTERGENIC
3R	13415655	3R_13415655_SNP [dm3] 3R_17589933_SNP [dm6]	A	C	1.292e^-4	0.69	INTERGENIC
4	1165947	4_1165947_SNP [dm3] 4_1145321_SNP [dm6]	C	T	1.294e^-4	0.69	SPLICE_SITE_REGION CG32017 UTR_5_PRIME CG32017 INTRON CG32017
4	917555	4_917555_SNP [dm3] 4_896929_SNP [dm6]	T	C	1.308e^-4	0.69	INTRON unc-13
2L	13252246	2L_13252246_SNP [dm3] 2L_13252246_SNP [dm6]	T	C	1.310e^-4	0.69	NON_SYNONYMOUS_CODING CG31728
3R	23644556	3R_23644556_SNP [dm3] 3R_27818834_SNP [dm6]	C	T	1.315e^-4	0.69	INTRON CG34353
2R	3654648	2R_3654648_SNP [dm3] 2R_7767143_SNP [dm6]	T	C	1.319e^-4	0.69	INTRON CG30497 & 1 other	TF binding site mE1_TFBS_chinmo
3R	14854838	3R_14854838_SNP [dm3] 3R_19029116_SNP [dm6]	C	T	1.326e^-4	0.69	START_GAINED P5cr UTR_5_PRIME P5cr UPSTREAM gatA DOWNSTREAM Prp18	TF binding site mE1_TFBS_cad
3R	14854841	3R_14854841_SNP [dm3] 3R_19029119_SNP [dm6]	T	C	1.326e^-4	0.69	UTR_5_PRIME P5cr UPSTREAM gatA DOWNSTREAM Prp18	TF binding site mE1_TFBS_cad
3R	5996556	3R_5996556_SNP [dm3] 3R_10170834_SNP [dm6]	G	A	1.331e^-4	0.69	UPSTREAM Best1 DOWNSTREAM CG12814 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	10304506	X_10304506_DEL [dm3] X_10410473_DEL [dm6]	AGTA	A	1.335e^-4	0.69	UTR_3_PRIME CG32683 DOWNSTREAM flw
3R	26344695	3R_26344695_SNP [dm3] 3R_30518973_SNP [dm6]	C	A	1.341e^-4	0.69	DOWNSTREAM jdp INTRON jdp
2L	16953178	2L_16953178_SNP [dm3] 2L_16953178_SNP [dm6]	C	G	1.341e^-4	0.69	INTERGENIC
3L	2172264	3L_2172264_SNP [dm3] 3L_2172264_SNP [dm6]	G	A	1.346e^-4	0.69	DOWNSTREAM CG15820 EXON CR15821
3L	8017619	3L_8017619_SNP [dm3] 3L_8024519_SNP [dm6]	C	A	1.347e^-4	0.69	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8017595	3L_8017595_SNP [dm3] 3L_8024495_SNP [dm6]	C	T	1.349e^-4	0.69	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19072417	3R_19072417_SNP [dm3] 3R_23246695_SNP [dm6]	A	G	1.351e^-4	0.69	INTRON CG4467	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18928494	2R_18928494_SNP [dm3] 2R_23040971_SNP [dm6]	T	C	1.353e^-4	0.69	INTRON twi & 1 other
2L	8610219	2L_8610219_SNP [dm3] 2L_8610219_SNP [dm6]	C	T	1.356e^-4	0.69	INTRON Sema-1a
3L	9719885	3L_9719885_INS [dm3] 3L_9726785_INS [dm6]	A	TT	1.357e^-4	0.69	UPSTREAM Naa60 DOWNSTREAM defl INTERGENIC	TF binding site mE1_TFBS_HSA
3R	20405056	3R_20405056_SNP [dm3] 3R_24579334_SNP [dm6]	C	T	1.362e^-4	0.69	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11458646	3L_11458646_SNP [dm3] 3L_11465546_SNP [dm6]	A	C	1.368e^-4	0.69	UPSTREAM CG6140 INTRON CG6140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	12650543	3L_12650543_SNP [dm3] 3L_12657443_SNP [dm6]	C	G	1.368e^-4	0.69	INTERGENIC
3L	10258431	3L_10258431_SNP [dm3] 3L_10265331_SNP [dm6]	T	C	1.368e^-4	0.69	SYNONYMOUS_CODING can	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10258440	3L_10258440_SNP [dm3] 3L_10265340_SNP [dm6]	A	G	1.368e^-4	0.69	SYNONYMOUS_CODING can	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
4	970785	4_970785_SNP [dm3] 4_950159_SNP [dm6]	A	T	1.371e^-4	0.69	DOWNSTREAM mGluR INTERGENIC	transposable element FlyBase
2L	8043240	2L_8043240_SNP [dm3] 2L_8043240_SNP [dm6]	C	A	1.374e^-4	0.69	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1572471	3L_1572471_SNP [dm3] 3L_1572471_SNP [dm6]	G	C	1.375e^-4	0.69	INTRON CG12004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18152727	2L_18152727_SNP [dm3] 2L_18152727_SNP [dm6]	C	T	1.380e^-4	0.69	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
4	949738	4_949738_SNP [dm3] 4_929112_SNP [dm6]	T	G	1.382e^-4	0.69	INTRON eIF4G
X	17340702	X_17340702_SNP [dm3] X_17446669_SNP [dm6]	T	A	1.383e^-4	0.69	NON_SYNONYMOUS_CODING p-cup
2R	17588477	2R_17588477_SNP [dm3] 2R_21700972_SNP [dm6]	G	A	1.388e^-4	0.69	UPSTREAM HmgD INTRON HmgZ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	8564214	2R_8564214_SNP [dm3] 2R_12676709_SNP [dm6]	C	T	1.388e^-4	0.69	UPSTREAM CG42708 INTRON CG42708	TF binding site mE1_TFBS_inv
3R	16564972	3R_16564972_SNP [dm3] 3R_20739250_SNP [dm6]	C	T	1.389e^-4	0.69	UPSTREAM CG17267 & 1 other DOWNSTREAM cdc2c INTERGENIC
X	14011757	X_14011757_SNP [dm3] X_14117724_SNP [dm6]	T	C	1.390e^-4	0.69	DOWNSTREAM tRNA:S7:12Eg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16145252	3R_16145252_SNP [dm3] 3R_20319530_SNP [dm6]	T	C	1.407e^-4	0.694	INTRON CG42668
2R	17772302	2R_17772302_INS [dm3] 2R_21884797_INS [dm6]	A	AA	1.410e^-4	0.694	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10969845	3L_10969845_INS [dm3] 3L_10976745_INS [dm6]	T	TACTT	1.411e^-4	0.694	INTERGENIC
3R	6093705	3R_6093705_SNP [dm3] 3R_10267983_SNP [dm6]	A	T	1.421e^-4	0.694	INTRON CG43143	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	17353016	X_17353016_SNP [dm3] X_17458983_SNP [dm6]	C	T	1.422e^-4	0.694	SYNONYMOUS_CODING CG43658	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7738378	X_7738378_SNP [dm3] X_7844345_SNP [dm6]	G	T	1.425e^-4	0.694	INTERGENIC
3L	13018845	3L_13018845_SNP [dm3] 3L_13025745_SNP [dm6]	G	C	1.426e^-4	0.694	SYNONYMOUS_CODING Zmynd10 DOWNSTREAM RpS12	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7261636	2R_7261636_SNP [dm3] 2R_11374131_SNP [dm6]	T	C	1.429e^-4	0.694	SYNONYMOUS_CODING CG13203	TF binding site mE1_TFBS_chinmo
3R	9760683	3R_9760683_SNP [dm3] 3R_13934961_SNP [dm6]	G	A	1.439e^-4	0.697	INTERGENIC
2R	11278761	2R_11278761_SNP [dm3] 2R_15391256_SNP [dm6]	T	A	1.453e^-4	0.7	INTERGENIC
3L	3300551	3L_3300551_INS [dm3] 3L_3300551_INS [dm6]	G	ACTC	1.456e^-4	0.7	INTRON CG14968
2L	5792290	2L_5792290_SNP [dm3] 2L_5792290_SNP [dm6]	G	A	1.457e^-4	0.7	INTRON CG9171
3R	11698488	3R_11698488_SNP [dm3] 3R_15872766_SNP [dm6]	G	A	1.460e^-4	0.7	INTRON CG31183
3L	11458647	3L_11458647_SNP [dm3] 3L_11465547_SNP [dm6]	T	A	1.472e^-4	0.704	UPSTREAM CG6140 INTRON CG6140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	10983362	3L_10983362_SNP [dm3] 3L_10990262_SNP [dm6]	G	C	1.476e^-4	0.704	INTRON klu
2L	9160246	2L_9160246_INS [dm3] 2L_9160246_INS [dm6]	T	AG	1.486e^-4	0.704	INTRON CG32982
2L	8043667	2L_8043667_SNP [dm3] 2L_8043667_SNP [dm6]	T	G	1.489e^-4	0.704	UTR_5_PRIME CG7466 UPSTREAM RpL36A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4451021	2L_4451021_SNP [dm3] 2L_4451021_SNP [dm6]	G	A	1.489e^-4	0.704	NON_SYNONYMOUS_CODING CG15439	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	912103	3L_912103_SNP [dm3] 3L_912103_SNP [dm6]	G	A	1.495e^-4	0.704	UTR_3_PRIME nerfin-1	regulatory region REDfly_CRMs
3L	3959515	3L_3959515_SNP [dm3] 3L_3959515_SNP [dm6]	C	A	1.498e^-4	0.704	NON_SYNONYMOUS_CODING CG12605	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	17929699	2R_17929699_SNP [dm3] 2R_22042194_SNP [dm6]	A	G	1.501e^-4	0.704	SYNONYMOUS_CODING PpD5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	9485921	2L_9485921_SNP [dm3] 2L_9485921_SNP [dm6]	C	G	1.504e^-4	0.704	INTERGENIC
3L	5733013	3L_5733013_SNP [dm3] 3L_5739913_SNP [dm6]	T	C	1.522e^-4	0.704	INTRON sif
3L	5733023	3L_5733023_SNP [dm3] 3L_5739923_SNP [dm6]	C	G	1.522e^-4	0.704	INTRON sif
2R	5172670	2R_5172670_SNP [dm3] 2R_9285165_SNP [dm6]	G	T	1.527e^-4	0.704	UPSTREAM Pkn DOWNSTREAM CG2063 EXON CR45132	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	13526292	2R_13526292_SNP [dm3] 2R_17638787_SNP [dm6]	G	A	1.532e^-4	0.704	INTRON CG10936	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
4	943295	4_943295_SNP [dm3] 4_922669_SNP [dm6]	G	C	1.534e^-4	0.704	INTRON eIF4G	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	2991558	3L_2991558_SNP [dm3] 3L_2991558_SNP [dm6]	C	T	1.537e^-4	0.704	INTERGENIC
3L	9719882	3L_9719882_SNP [dm3] 3L_9726782_SNP [dm6]	G	A	1.537e^-4	0.704	UPSTREAM Naa60 DOWNSTREAM defl INTERGENIC	TF binding site mE1_TFBS_HSA
3R	14031356	3R_14031356_SNP [dm3] 3R_18205634_SNP [dm6]	T	C	1.540e^-4	0.704	INTRON CG7985
3L	17157292	3L_17157292_INS [dm3] 3L_17164192_INS [dm6]	G	GAG	1.543e^-4	0.704	INTRON Rbp6
X	17346119	X_17346119_SNP [dm3] X_17452086_SNP [dm6]	A	G	1.546e^-4	0.704	SYNONYMOUS_CODING CG8568
2L	9199441	2L_9199441_DEL [dm3] 2L_9199441_DEL [dm6]	ATGGCT	A	1.547e^-4	0.704	INTRON tai
3R	9760659	3R_9760659_SNP [dm3] 3R_13934937_SNP [dm6]	G	A	1.549e^-4	0.704	INTERGENIC
4	943229	4_943229_SNP [dm3] 4_922603_SNP [dm6]	C	A	1.552e^-4	0.704	INTRON eIF4G	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	789143	3L_789143_SNP [dm3] 3L_789143_SNP [dm6]	T	A	1.559e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	8129876	X_8129876_SNP [dm3] X_8235843_SNP [dm6]	C	T	1.589e^-4	0.716	INTRON sdt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18641393	2R_18641393_SNP [dm3] 2R_22753888_SNP [dm6]	T	A	1.595e^-4	0.716	INTRON CG42260	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12992113	2L_12992113_SNP [dm3] 2L_12992113_SNP [dm6]	G	A	1.601e^-4	0.716	INTERGENIC
2L	3914022	2L_3914022_SNP [dm3] 2L_3914022_SNP [dm6]	T	C	1.609e^-4	0.716	SYNONYMOUS_CODING CG31773 INTRON fred	TF binding site BDTNP1_TFBS_dl
4	1034904	4_1034904_SNP [dm3] 4_1014278_SNP [dm6]	C	T	1.615e^-4	0.716	INTRON PlexA
3R	9389150	3R_9389150_SNP [dm3] 3R_13563428_SNP [dm6]	T	C	1.616e^-4	0.716	INTERGENIC
3R	9389159	3R_9389159_SNP [dm3] 3R_13563437_SNP [dm6]	G	T	1.616e^-4	0.716	INTERGENIC
3R	20561025	3R_20561025_DEL [dm3] 3R_24735303_DEL [dm6]	AA	A	1.620e^-4	0.716	INTRON tok
2L	7598416	2L_7598416_SNP [dm3] 2L_7598416_SNP [dm6]	A	G	1.622e^-4	0.716	INTERGENIC	TF binding site mE1_TFBS_cad
4	851780	4_851780_SNP [dm3] 4_831154_SNP [dm6]	T	G	1.634e^-4	0.716	INTRON Sox102F
3R	26692149	3R_26692149_SNP [dm3] 3R_30866427_SNP [dm6]	G	A	1.649e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	17346205	X_17346205_SNP [dm3] X_17452172_SNP [dm6]	G	A	1.651e^-4	0.716	SYNONYMOUS_CODING CG8568
3R	5537026	3R_5537026_SNP [dm3] 3R_9711304_SNP [dm6]	G	T	1.651e^-4	0.716	NON_SYNONYMOUS_CODING dmt UPSTREAM trbd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	15123149	3L_15123149_SNP [dm3] 3L_15130049_SNP [dm6]	C	G	1.653e^-4	0.716	SYNONYMOUS_CODING CG13457	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19064323	2R_19064323_SNP [dm3] 2R_23176800_SNP [dm6]	T	G	1.657e^-4	0.716	INTRON CG34371
3R	26408660	3R_26408660_SNP [dm3] 3R_30582938_SNP [dm6]	T	A	1.658e^-4	0.716	SYNONYMOUS_CODING Rpt6R DOWNSTREAM CG9702	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6549300	X_6549300_SNP [dm3] X_6655267_SNP [dm6]	G	A	1.659e^-4	0.716	NON_SYNONYMOUS_CODING l_1_G0148	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12425136	3L_12425136_SNP [dm3] 3L_12432036_SNP [dm6]	C	T	1.668e^-4	0.716	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	22916636	3R_22916636_SNP [dm3] 3R_27090914_SNP [dm6]	T	C	1.669e^-4	0.716	INTRON Cpr97Eb
3R	20460830	3R_20460830_SNP [dm3] 3R_24635108_SNP [dm6]	C	T	1.670e^-4	0.716	UTR_5_PRIME CG43222 UPSTREAM CG43222 DOWNSTREAM puf & 1 other
2L	8435217	2L_8435217_SNP [dm3] 2L_8435217_SNP [dm6]	A	T	1.672e^-4	0.716	SYNONYMOUS_CODING D12
3L	4736999	3L_4736999_SNP [dm3] 3L_4736999_SNP [dm6]	G	A	1.677e^-4	0.716	INTRON RhoGEF64C
4	949736	4_949736_SNP [dm3] 4_929110_SNP [dm6]	A	G	1.680e^-4	0.716	INTRON eIF4G
3R	24490691	3R_24490691_SNP [dm3] 3R_28664969_SNP [dm6]	C	G	1.690e^-4	0.716	INTERGENIC
3R	15825590	3R_15825590_SNP [dm3] 3R_19999868_SNP [dm6]	G	A	1.720e^-4	0.716	INTRON Hs6st
2L	9152903	2L_9152903_SNP [dm3] 2L_9152903_SNP [dm6]	G	A	1.720e^-4	0.716	INTRON CG32982
X	8542085	X_8542085_SNP [dm3] X_8648052_SNP [dm6]	T	C	1.723e^-4	0.716	INTRON oc
X	14150008	X_14150008_SNP [dm3] X_14255975_SNP [dm6]	A	T	1.727e^-4	0.716	DOWNSTREAM mud INTRON mud	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9968658	3L_9968658_SNP [dm3] 3L_9975558_SNP [dm6]	G	A	1.727e^-4	0.716	UTR_5_PRIME dpr6
3R	14854435	3R_14854435_SNP [dm3] 3R_19028713_SNP [dm6]	G	A	1.728e^-4	0.716	UPSTREAM P5cr DOWNSTREAM NP15.6 INTRON gatA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18076514	X_18076514_SNP [dm3] X_18182481_SNP [dm6]	T	C	1.740e^-4	0.716	INTRON Frq2
3R	2140173	3R_2140173_SNP [dm3] 3R_6314451_SNP [dm6]	A	G	1.741e^-4	0.716	UPSTREAM Osi17 INTRON Osi17
3R	9868260	3R_9868260_SNP [dm3] 3R_14042538_SNP [dm6]	A	T	1.744e^-4	0.716	INTERGENIC
3R	23644235	3R_23644235_SNP [dm3] 3R_27818513_SNP [dm6]	T	C	1.745e^-4	0.716	INTRON CG34353	TF binding site BDTNP1_TFBS_twi
3R	22913324	3R_22913324_SNP [dm3] 3R_27087602_SNP [dm6]	A	T	1.747e^-4	0.716	UTR_5_PRIME Cpr97Ea UPSTREAM Cpr97Ea
4	656944	4_656944_SNP [dm3] 4_636318_SNP [dm6]	T	G	1.748e^-4	0.716	NON_SYNONYMOUS_CODING CG9935 UTR_3_PRIME CG9935 DOWNSTREAM CG1732
3R	15211945	3R_15211945_SNP [dm3] 3R_19386223_SNP [dm6]	C	T	1.749e^-4	0.716	INTRON Ino80 EXON CR34285
3R	15211984	3R_15211984_SNP [dm3] 3R_19386262_SNP [dm6]	A	G	1.749e^-4	0.716	INTRON Ino80 EXON CR34285
2R	17724377	2R_17724377_SNP [dm3] 2R_21836872_SNP [dm6]	T	G	1.757e^-4	0.716	UPSTREAM CG4377 DOWNSTREAM CG4372 INTERGENIC
2R	20046993	2R_20046993_SNP [dm3] 2R_24159470_SNP [dm6]	T	C	1.762e^-4	0.716	UTR_5_PRIME spag UPSTREAM DnaJ-60 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	10870298	2L_10870298_SNP [dm3] 2L_10870298_SNP [dm6]	G	T	1.762e^-4	0.716	NON_SYNONYMOUS_CODING CG12517 UPSTREAM CR45453	TF binding site mE1_TFBS_inv
3R	26546132	3R_26546132_SNP [dm3] 3R_30720410_SNP [dm6]	G	A	1.764e^-4	0.716	INTERGENIC
X	13447435	X_13447435_SNP [dm3] X_13553402_SNP [dm6]	T	A	1.774e^-4	0.716	INTRON CG11816
2L	6797745	2L_6797745_SNP [dm3] 2L_6797745_SNP [dm6]	A	T	1.776e^-4	0.716	UPSTREAM nrv2 INTRON nrv2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
4	918678	4_918678_SNP [dm3] 4_898052_SNP [dm6]	A	T	1.777e^-4	0.716	INTRON unc-13
3R	5042138	3R_5042138_SNP [dm3] 3R_9216416_SNP [dm6]	T	G	1.783e^-4	0.716	INTRON pum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14551455	2R_14551455_SNP [dm3] 2R_18663950_SNP [dm6]	C	T	1.788e^-4	0.716	DOWNSTREAM CG33136 INTERGENIC
3L	9969056	3L_9969056_SNP [dm3] 3L_9975956_SNP [dm6]	T	A	1.788e^-4	0.716	INTRON dpr6
3L	19641450	3L_19641450_SNP [dm3] 3L_19648350_SNP [dm6]	G	T	1.792e^-4	0.716	SYNONYMOUS_CODING Oat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10861581	X_10861581_SNP [dm3] X_10967548_SNP [dm6]	A	T	1.792e^-4	0.716	UPSTREAM C901 DOWNSTREAM CG42339 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5250672	X_5250672_SNP [dm3] X_5356639_SNP [dm6]	A	T	1.793e^-4	0.716	INTRON SK
X	5221812	X_5221812_SNP [dm3] X_5327779_SNP [dm6]	G	A	1.799e^-4	0.716	SYNONYMOUS_CODING CG3309	TF binding site mE1_TFBS_chinmo
2L	6797739	2L_6797739_SNP [dm3] 2L_6797739_SNP [dm6]	T	G	1.800e^-4	0.716	UPSTREAM nrv2 INTRON nrv2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9097000	2L_9097000_SNP [dm3] 2L_9097000_SNP [dm6]	T	C	1.800e^-4	0.716	UPSTREAM CG31609 INTERGENIC
2L	19392483	2L_19392483_SNP [dm3] 2L_19392483_SNP [dm6]	G	A	1.800e^-4	0.716	SYNONYMOUS_CODING CG17544	TF binding site mE1_TFBS_cad
4	725327	4_725327_SNP [dm3] 4_704701_SNP [dm6]	G	T	1.812e^-4	0.716	UTR_5_PRIME ey INTRON ey	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	10861640	X_10861640_SNP [dm3] X_10967607_SNP [dm6]	C	A	1.815e^-4	0.716	UPSTREAM C901 DOWNSTREAM CG42339 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13840140	3L_13840140_SNP [dm3] 3L_13847040_SNP [dm6]	C	G	1.821e^-4	0.716	SYNONYMOUS_CODING Hml
X	17016249	X_17016249_SNP [dm3] X_17122216_SNP [dm6]	T	C	1.829e^-4	0.716	INTRON CG5004	TF binding site BDTNP1_TFBS_twi
3R	5995645	3R_5995645_SNP [dm3] 3R_10169923_SNP [dm6]	A	G	1.834e^-4	0.716	INTRON Best1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	16565042	3R_16565042_SNP [dm3] 3R_20739320_SNP [dm6]	G	T	1.835e^-4	0.716	UPSTREAM CG17267 & 1 other DOWNSTREAM cdc2c INTERGENIC
3L	4274522	3L_4274522_SNP [dm3] 3L_4274522_SNP [dm6]	T	C	1.837e^-4	0.716	SYNONYMOUS_CODING CG1273
4	841057	4_841057_SNP [dm3] 4_820431_SNP [dm6]	T	C	1.839e^-4	0.716	INTRON Sox102F
3R	15856129	3R_15856129_SNP [dm3] 3R_20030407_SNP [dm6]	A	G	1.843e^-4	0.716	SYNONYMOUS_CODING trem DOWNSTREAM CG4854	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	5995605	3R_5995605_SNP [dm3] 3R_10169883_SNP [dm6]	T	C	1.846e^-4	0.716	INTRON Best1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	3335838	3L_3335838_SNP [dm3] 3L_3335838_SNP [dm6]	C	T	1.847e^-4	0.716	UPSTREAM CG14969 & 1 other DOWNSTREAM Drsl6 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13779638	2R_13779638_SNP [dm3] 2R_17892133_SNP [dm6]	G	A	1.849e^-4	0.716	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	495526	3L_495526_SNP [dm3] 3L_495526_SNP [dm6]	G	A	1.851e^-4	0.716	INTRON klar
3R	26115489	3R_26115489_DEL [dm3] 3R_30289767_DEL [dm6]	GCAGCAGGGTGAG...	G	1.862e^-4	0.716	INTRON hdc
3R	9760648	3R_9760648_SNP [dm3] 3R_13934926_SNP [dm6]	A	C	1.867e^-4	0.716	INTERGENIC
X	17355509	X_17355509_SNP [dm3] X_17461476_SNP [dm6]	A	G	1.868e^-4	0.716	SYNONYMOUS_CODING CG43658	TF binding site mE1_TFBS_chinmo
2R	13021998	2R_13021998_SNP [dm3] 2R_17134493_SNP [dm6]	C	T	1.870e^-4	0.716	NON_SYNONYMOUS_CODING CG11400 DOWNSTREAM Acp54A1
3L	13840106	3L_13840106_SNP [dm3] 3L_13847006_SNP [dm6]	T	C	1.884e^-4	0.716	INTRON Hml
X	4678944	X_4678944_SNP [dm3] X_4784911_SNP [dm6]	T	C	1.885e^-4	0.716	SYNONYMOUS_CODING CG6978	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7590059	2L_7590059_SNP [dm3] 2L_7590059_SNP [dm6]	A	T	1.886e^-4	0.716	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	10595673	3L_10595673_SNP [dm3] 3L_10602573_SNP [dm6]	C	T	1.887e^-4	0.716	INTERGENIC
3L	4687658	3L_4687658_SNP [dm3] 3L_4687658_SNP [dm6]	C	T	1.889e^-4	0.716	UTR_3_PRIME CG7514 UPSTREAM axo	TF binding site mE1_TFBS_cad
3L	6073968	3L_6073968_SNP [dm3] 3L_6080868_SNP [dm6]	C	A	1.890e^-4	0.716	SYNONYMOUS_CODING CG6619	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	21486240	3R_21486240_SNP [dm3] 3R_25660518_SNP [dm6]	G	A	1.896e^-4	0.716	INTRON Tnks	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	5000695	X_5000695_SNP [dm3] X_5106662_SNP [dm6]	T	A	1.896e^-4	0.716	INTRON rg & 1 other
2L	5792787	2L_5792787_SNP [dm3] 2L_5792787_SNP [dm6]	C	A	1.897e^-4	0.716	INTRON CG9171
4	971992	4_971992_SNP [dm3] 4_951366_SNP [dm6]	G	A	1.897e^-4	0.716	DOWNSTREAM 4E-T INTERGENIC
X	7911034	X_7911034_SNP [dm3] X_8017001_SNP [dm6]	T	C	1.901e^-4	0.716	INTRON Tbh
2L	16383408	2L_16383408_SNP [dm3] 2L_16383408_SNP [dm6]	C	A	1.919e^-4	0.721	INTERGENIC
3L	18199313	3L_18199313_SNP [dm3] 3L_18206213_SNP [dm6]	T	C	1.942e^-4	0.723	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	11698474	3R_11698474_SNP [dm3] 3R_15872752_SNP [dm6]	T	C	1.945e^-4	0.723	INTRON CG31183
3R	11697421	3R_11697421_SNP [dm3] 3R_15871699_SNP [dm6]	G	A	1.946e^-4	0.723	INTRON CG31183
X	4046993	X_4046993_SNP [dm3] X_4152960_SNP [dm6]	T	G	1.946e^-4	0.723	INTRON Fas2
2L	10903073	2L_10903073_SNP [dm3] 2L_10903073_SNP [dm6]	T	A	1.947e^-4	0.723	DOWNSTREAM CR45724 INTERGENIC
3R	12035671	3R_12035671_SNP [dm3] 3R_16209949_SNP [dm6]	T	C	1.952e^-4	0.723	UPSTREAM CR45638 DOWNSTREAM CR45640 & 1 other INTERGENIC
2R	13779630	2R_13779630_SNP [dm3] 2R_17892125_SNP [dm6]	T	A	1.959e^-4	0.723	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	17348420	X_17348420_SNP [dm3] X_17454387_SNP [dm6]	G	A	1.960e^-4	0.723	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1376495	2R_1376495_SNP [dm3] 2R_5488990_SNP [dm6]	C	T	1.961e^-4	0.723	INTRON CG30440	transposable element FlyBase
3R	26041900	3R_26041900_SNP [dm3] 3R_30216178_SNP [dm6]	C	T	1.963e^-4	0.723	UPSTREAM CecC INTERGENIC
3R	9793988	3R_9793988_INS [dm3] 3R_13968266_INS [dm6]	A	ATGC	1.968e^-4	0.724	UTR_3_PRIME rdx DOWNSTREAM rdx
4	777715	4_777715_SNP [dm3] 4_757089_SNP [dm6]	A	T	1.980e^-4	0.726	INTRON bt
X	5682412	X_5682412_SNP [dm3] X_5788379_SNP [dm6]	A	T	1.981e^-4	0.726	UTR_3_PRIME CG42699
2R	7963589	2R_7963589_SNP [dm3] 2R_12076084_SNP [dm6]	G	C	1.987e^-4	0.726	INTRON CG8888
4	963176	4_963176_SNP [dm3] 4_942550_SNP [dm6]	A	T	1.992e^-4	0.726	INTRON mGluR	TF binding site BDTNP1_TFBS_dl
3L	11803958	3L_11803958_SNP [dm3] 3L_11810858_SNP [dm6]	T	A	1.998e^-4	0.726	NON_SYNONYMOUS_CODING CG42255
X	18906424	X_18906424_SNP [dm3] X_19012391_SNP [dm6]	T	G	1.998e^-4	0.726	SYNONYMOUS_CODING CG43759	TF binding site mE1_TFBS_chinmo
3L	10821543	3L_10821543_SNP [dm3] 3L_10828443_SNP [dm6]	C	T	2.008e^-4	0.727	INTERGENIC
2R	11278786	2R_11278786_SNP [dm3] 2R_15391281_SNP [dm6]	T	C	2.020e^-4	0.727	INTERGENIC
2R	18749390	2R_18749390_SNP [dm3] 2R_22861867_SNP [dm6]	C	T	2.020e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18933456	3R_18933456_SNP [dm3] 3R_23107734_SNP [dm6]	C	T	2.021e^-4	0.727	INTRON CG13830
4	944082	4_944082_INS [dm3] 4_923456_INS [dm6]	A	AA	2.022e^-4	0.727	INTRON eIF4G
3R	6560350	3R_6560350_SNP [dm3] 3R_10734628_SNP [dm6]	A	T	2.025e^-4	0.727	DOWNSTREAM tomboy20 INTERGENIC
3R	5565958	3R_5565958_SNP [dm3] 3R_9740236_SNP [dm6]	C	A	2.054e^-4	0.734	UPSTREAM Pnn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	13574348	X_13574348_SNP [dm3] X_13680315_SNP [dm6]	T	C	2.059e^-4	0.734	START_GAINED CG12177 UTR_5_PRIME CG12177 UPSTREAM CG12177	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9505948	3L_9505948_SNP [dm3] 3L_9512848_SNP [dm6]	C	G	2.061e^-4	0.734	SYNONYMOUS_CODING CG33702 UPSTREAM CG33703 DOWNSTREAM CR33701
2L	19324846	2L_19324846_SNP [dm3] 2L_19324846_SNP [dm6]	T	A	2.062e^-4	0.734	EXON CR45700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19131220	2R_19131220_SNP [dm3] 2R_23243697_SNP [dm6]	C	A	2.062e^-4	0.734	DOWNSTREAM yip3 INTERGENIC
3L	3680503	3L_3680503_SNP [dm3] 3L_3680503_SNP [dm6]	T	A	2.068e^-4	0.734	INTERGENIC	TF binding site mE1_TFBS_cad
2L	7612473	2L_7612473_SNP [dm3] 2L_7612473_SNP [dm6]	T	C	2.075e^-4	0.735	INTRON CG6739
X	4678959	X_4678959_SNP [dm3] X_4784926_SNP [dm6]	G	A	2.090e^-4	0.737	SYNONYMOUS_CODING CG6978	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26861666	3R_26861666_SNP [dm3] 3R_31035944_SNP [dm6]	T	C	2.093e^-4	0.737	INTRON CG33773
3R	9188851	3R_9188851_SNP [dm3] 3R_13363129_SNP [dm6]	C	T	2.094e^-4	0.737	INTRON poly
3R	12035634	3R_12035634_SNP [dm3] 3R_16209912_SNP [dm6]	A	T	2.096e^-4	0.737	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 & 1 other INTERGENIC
3L	3341666	3L_3341666_SNP [dm3] 3L_3341666_SNP [dm6]	C	T	2.102e^-4	0.737	INTRON kst
3R	1746804	3R_1746804_SNP [dm3] 3R_5921082_SNP [dm6]	A	T	2.116e^-4	0.737	INTRON CG34113
3R	13418814	3R_13418814_SNP [dm3] 3R_17593092_SNP [dm6]	A	C	2.119e^-4	0.737	INTERGENIC
2R	13779538	2R_13779538_SNP [dm3] 2R_17892033_SNP [dm6]	T	G	2.120e^-4	0.737	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
4	952085	4_952085_SNP [dm3] 4_931459_SNP [dm6]	A	G	2.127e^-4	0.737	UPSTREAM eIF4G INTERGENIC	transposable element FlyBase
3L	12478358	3L_12478358_SNP [dm3] 3L_12485258_SNP [dm6]	C	T	2.128e^-4	0.737	UPSTREAM CG33725 & 1 other INTRON CG33725	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16055197	3L_16055197_SNP [dm3] 3L_16062097_SNP [dm6]	C	T	2.131e^-4	0.737	INTRON Mbs
2L	13516196	2L_13516196_SNP [dm3] 2L_13516196_SNP [dm6]	C	T	2.132e^-4	0.737	INTRON B4	TF binding site BDTNP1_TFBS_twi
3R	17362934	3R_17362934_SNP [dm3] 3R_21537212_SNP [dm6]	T	A	2.134e^-4	0.737	INTERGENIC	TF binding site mE1_TFBS_cad
3L	787377	3L_787377_SNP [dm3] 3L_787377_SNP [dm6]	T	C	2.136e^-4	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	9165136	2L_9165136_SNP [dm3] 2L_9165136_SNP [dm6]	C	G	2.139e^-4	0.737	SYNONYMOUS_CODING CG13108 DOWNSTREAM CG9586
3L	4270181	3L_4270181_SNP [dm3] 3L_4270181_SNP [dm6]	C	T	2.144e^-4	0.737	INTRON CG1273	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	13178077	3L_13178077_SNP [dm3] 3L_13184977_SNP [dm6]	G	T	2.156e^-4	0.738	INTERGENIC
3R	5565389	3R_5565389_SNP [dm3] 3R_9739667_SNP [dm6]	T	A	2.158e^-4	0.738	UTR_5_PRIME CG12950	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_zfh1
2R	12630045	2R_12630045_SNP [dm3] 2R_16742540_SNP [dm6]	G	A	2.159e^-4	0.738	INTERGENIC
3L	3349305	3L_3349305_SNP [dm3] 3L_3349305_SNP [dm6]	G	A	2.171e^-4	0.74	UPSTREAM kst INTRON kst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10787019	X_10787019_SNP [dm3] X_10892986_SNP [dm6]	T	G	2.172e^-4	0.74	UPSTREAM CR44524 DOWNSTREAM CR45617 INTERGENIC
3R	12115137	3R_12115137_SNP [dm3] 3R_16289415_SNP [dm6]	C	T	2.186e^-4	0.743	INTRON gish	TF binding site mE1_TFBS_inv
3L	7572146	3L_7572146_SNP [dm3] 3L_7579046_SNP [dm6]	T	C	2.188e^-4	0.743	INTERGENIC
3L	5735981	3L_5735981_SNP [dm3] 3L_5742881_SNP [dm6]	G	A	2.195e^-4	0.743	UTR_3_PRIME sif INTRON sif
2R	4084722	2R_4084722_SNP [dm3] 2R_8197217_SNP [dm6]	G	A	2.197e^-4	0.743	INTRON LRP1
3R	5565391	3R_5565391_SNP [dm3] 3R_9739669_SNP [dm6]	A	T	2.200e^-4	0.743	UTR_5_PRIME CG12950	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_zfh1
X	12740970	X_12740970_SNP [dm3] X_12846937_SNP [dm6]	T	C	2.209e^-4	0.744	INTRON Pde9
2R	5133059	2R_5133059_SNP [dm3] 2R_9245554_SNP [dm6]	T	C	2.217e^-4	0.745	INTRON hig
3L	13133153	3L_13133153_SNP [dm3] 3L_13140053_SNP [dm6]	T	G	2.220e^-4	0.745	INTERGENIC
3R	18845085	3R_18845085_SNP [dm3] 3R_23019363_SNP [dm6]	A	T	2.225e^-4	0.746	INTERGENIC
3R	3418640	3R_3418640_SNP [dm3] 3R_7592918_SNP [dm6]	T	C	2.250e^-4	0.75	INTRON CG34127
4	1159109	4_1159109_SNP [dm3] 4_1138483_SNP [dm6]	A	T	2.254e^-4	0.75	UTR_3_PRIME CG32017 DOWNSTREAM CG11155	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	9886347	2L_9886347_SNP [dm3] 2L_9886347_SNP [dm6]	G	T	2.258e^-4	0.75	UPSTREAM CR44701 & 1 other INTERGENIC
2L	9351921	2L_9351921_INS [dm3] 2L_9351921_INS [dm6]	T	TT	2.262e^-4	0.75	DOWNSTREAM CG13110 INTERGENIC
4	954095	4_954095_SNP [dm3] 4_933469_SNP [dm6]	G	A	2.264e^-4	0.75	INTERGENIC	transposable element FlyBase
2R	17616643	2R_17616643_SNP [dm3] 2R_21729138_SNP [dm6]	G	T	2.268e^-4	0.75	UPSTREAM CR44750 INTERGENIC	TF binding site mE1_TFBS_cad
2L	16953161	2L_16953161_SNP [dm3] 2L_16953161_SNP [dm6]	C	T	2.268e^-4	0.75	INTERGENIC
2R	17906382	2R_17906382_SNP [dm3] 2R_22018877_SNP [dm6]	C	T	2.272e^-4	0.75	INTRON CG34370
2L	3235361	2L_3235361_SNP [dm3] 2L_3235361_SNP [dm6]	T	C	2.277e^-4	0.75	INTERGENIC
3L	9867008	3L_9867008_SNP [dm3] 3L_9873908_SNP [dm6]	C	T	2.279e^-4	0.75	INTERGENIC
3R	11943839	3R_11943839_SNP [dm3] 3R_16118117_SNP [dm6]	C	A	2.282e^-4	0.75	INTRON Sb	TF binding site mE1_TFBS_inv
2L	4295391	2L_4295391_SNP [dm3] 2L_4295391_SNP [dm6]	C	A	2.292e^-4	0.751	NON_SYNONYMOUS_CODING tutl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22661886	3R_22661886_SNP [dm3] 3R_26836164_SNP [dm6]	G	A	2.306e^-4	0.751	INTRON Tl
3L	15527485	3L_15527485_SNP [dm3] 3L_15534385_SNP [dm6]	G	A	2.308e^-4	0.751	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	16564978	3R_16564978_SNP [dm3] 3R_20739256_SNP [dm6]	G	A	2.317e^-4	0.751	UPSTREAM CG17267 & 1 other DOWNSTREAM cdc2c INTERGENIC
3L	15699993	3L_15699993_SNP [dm3] 3L_15706893_SNP [dm6]	T	C	2.318e^-4	0.751	INTERGENIC
3L	5938876	3L_5938876_SNP [dm3] 3L_5945776_SNP [dm6]	A	T	2.338e^-4	0.751	INTRON CG33993	TF binding site BDTNP1_TFBS_twi
3R	21492006	3R_21492006_SNP [dm3] 3R_25666284_SNP [dm6]	C	G	2.339e^-4	0.751	DOWNSTREAM RASSF8 INTRON Lgr3	TF binding site BDTNP1_TFBS_twi
X	17345462	X_17345462_SNP [dm3] X_17451429_SNP [dm6]	T	G	2.340e^-4	0.751	INTRON CG8568	TF binding site mE1_TFBS_cad
3R	18640004	3R_18640004_SNP [dm3] 3R_22814282_SNP [dm6]	T	G	2.342e^-4	0.751	DOWNSTREAM CG13840 INTERGENIC
3R	22913283	3R_22913283_SNP [dm3] 3R_27087561_SNP [dm6]	A	G	2.342e^-4	0.751	UTR_5_PRIME Cpr97Ea UPSTREAM Cpr97Ea
3L	9719692	3L_9719692_SNP [dm3] 3L_9726592_SNP [dm6]	G	A	2.346e^-4	0.751	SYNONYMOUS_CODING defl UPSTREAM Naa60	TF binding site mE1_TFBS_HSA
3L	3680505	3L_3680505_SNP [dm3] 3L_3680505_SNP [dm6]	A	T	2.347e^-4	0.751	INTERGENIC	TF binding site mE1_TFBS_cad
3R	22485416	3R_22485416_SNP [dm3] 3R_26659694_SNP [dm6]	T	G	2.349e^-4	0.751	INTRON beat-VII
3R	12389556	3R_12389556_SNP [dm3] 3R_16563834_SNP [dm6]	A	T	2.356e^-4	0.751	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	6891539	3L_6891539_SNP [dm3] 3L_6898439_SNP [dm6]	A	G	2.359e^-4	0.751	INTERGENIC
3L	5737689	3L_5737689_SNP [dm3] 3L_5744589_SNP [dm6]	A	G	2.361e^-4	0.751	UTR_3_PRIME sif INTRON sif
3L	3300543	3L_3300543_SNP [dm3] 3L_3300543_SNP [dm6]	G	A	2.361e^-4	0.751	INTRON CG14968
3L	3300555	3L_3300555_SNP [dm3] 3L_3300555_SNP [dm6]	C	T	2.361e^-4	0.751	INTRON CG14968
3R	26861962	3R_26861962_DEL [dm3] 3R_31036240_DEL [dm6]	TCATTGCGAAT...	T	2.364e^-4	0.751	DOWNSTREAM CG33773 INTERGENIC
X	14150207	X_14150207_SNP [dm3] X_14256174_SNP [dm6]	A	G	2.364e^-4	0.751	NON_SYNONYMOUS_CODING mud DOWNSTREAM mud INTRON mud	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1117429	2L_1117429_SNP [dm3] 2L_1117429_SNP [dm6]	A	C	2.368e^-4	0.751	INTRON Pino	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	10362260	2L_10362260_SNP [dm3] 2L_10362260_SNP [dm6]	C	T	2.391e^-4	0.754	SYNONYMOUS_CODING Cand1 UPSTREAM pim	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	14685317	2R_14685317_SNP [dm3] 2R_18797812_SNP [dm6]	C	T	2.393e^-4	0.754	SYNONYMOUS_CODING l_2_08717	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13439271	2L_13439271_SNP [dm3] 2L_13439271_SNP [dm6]	A	G	2.396e^-4	0.754	UTR_3_PRIME Tehao INTRON CG42784 EXON CR45683	TF binding site mE1_TFBS_cad
3L	1176396	3L_1176396_SNP [dm3] 3L_1176396_SNP [dm6]	T	G	2.405e^-4	0.754	INTRON bab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	19394375	2L_19394375_SNP [dm3] 2L_19394375_SNP [dm6]	T	G	2.406e^-4	0.754	SYNONYMOUS_CODING CG31798 UPSTREAM CG17544 INTRON CG17544	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	19363380	2L_19363380_SNP [dm3] 2L_19363380_SNP [dm6]	A	G	2.408e^-4	0.754	UPSTREAM dnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8733453	2L_8733453_SNP [dm3] 2L_8733453_SNP [dm6]	G	A	2.410e^-4	0.754	INTRON raw
2R	18077787	2R_18077787_SNP [dm3] 2R_22190282_SNP [dm6]	A	G	2.412e^-4	0.754	UTR_3_PRIME Swim DOWNSTREAM Vps35	TF binding site mE1_TFBS_cad
2R	19064350	2R_19064350_SNP [dm3] 2R_23176827_SNP [dm6]	A	C	2.419e^-4	0.754	INTRON CG34371
2L	7469223	2L_7469223_SNP [dm3] 2L_7469223_SNP [dm6]	C	T	2.421e^-4	0.754	INTRON CG6055
2L	10903072	2L_10903072_SNP [dm3] 2L_10903072_SNP [dm6]	T	C	2.429e^-4	0.755	DOWNSTREAM CR45724 INTERGENIC
3L	21079359	3L_21079359_SNP [dm3] 3L_21086259_SNP [dm6]	T	G	2.435e^-4	0.755	INTRON ko	regulatory region REDfly_CRMs
X	17359912	X_17359912_SNP [dm3] X_17465879_SNP [dm6]	A	G	2.438e^-4	0.755	INTRON CG43658
3R	14703955	3R_14703955_INS [dm3] 3R_18878233_INS [dm6]	T	TT	2.438e^-4	0.755	INTERGENIC
X	7243478	X_7243478_SNP [dm3] X_7349445_SNP [dm6]	G	A	2.444e^-4	0.755	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26692021	3R_26692021_INS [dm3] 3R_30866299_INS [dm6]	A	ATA	2.447e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
4	574134	4_574134_SNP [dm3] 4_553508_SNP [dm6]	T	A	2.462e^-4	0.758	SYNONYMOUS_CODING Thd1
2R	1381094	2R_1381094_SNP [dm3] 2R_5493589_SNP [dm6]	T	G	2.474e^-4	0.76	INTRON CG30440
3L	7297614	3L_7297614_DEL [dm3] 3L_7304514_DEL [dm6]	CC	C	2.484e^-4	0.76	INTRON unc-13-4A	TF binding site mE1_TFBS_inv
3R	25463177	3R_25463177_INS [dm3] 3R_29637455_INS [dm6]	T	TG	2.488e^-4	0.76	INTRON Dop1R2
3L	7086928	3L_7086928_SNP [dm3] 3L_7093828_SNP [dm6]	C	A	2.490e^-4	0.76	UTR_3_PRIME Cpr65Ec UPSTREAM form3	TF binding site mE1_TFBS_HSA
4	1009575	4_1009575_SNP [dm3] 4_988949_SNP [dm6]	A	T	2.491e^-4	0.76	UPSTREAM toy INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	14150016	X_14150016_SNP [dm3] X_14255983_SNP [dm6]	C	A	2.493e^-4	0.76	DOWNSTREAM mud INTRON mud	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	13418820	3R_13418820_SNP [dm3] 3R_17593098_SNP [dm6]	C	A	2.500e^-4	0.761	INTERGENIC
2R	19064339	2R_19064339_SNP [dm3] 2R_23176816_SNP [dm6]	A	T	2.506e^-4	0.762	INTRON CG34371
2R	20044116	2R_20044116_SNP [dm3] 2R_24156593_SNP [dm6]	T	C	2.510e^-4	0.762	INTRON Dat	TF binding site mE1_TFBS_chinmo
3L	5404417	3L_5404417_SNP [dm3] 3L_5411317_SNP [dm6]	T	G	2.514e^-4	0.762	INTERGENIC
2R	13024642	2R_13024642_SNP [dm3] 2R_17137137_SNP [dm6]	T	A	2.534e^-4	0.767	UPSTREAM CG11395 DOWNSTREAM CR44391 & 1 other INTERGENIC
2R	14319262	2R_14319262_DEL [dm3] 2R_18431757_DEL [dm6]	AA	A	2.547e^-4	0.769	INTRON CG30118	TF binding site mE1_TFBS_chinmo
3L	10592560	3L_10592560_SNP [dm3] 3L_10599460_SNP [dm6]	T	C	2.556e^-4	0.769	INTERGENIC
X	17345674	X_17345674_SNP [dm3] X_17451641_SNP [dm6]	C	T	2.558e^-4	0.769	INTRON CG8568	TF binding site mE1_TFBS_cad
2L	9098475	2L_9098475_SNP [dm3] 2L_9098475_SNP [dm6]	G	A	2.561e^-4	0.769	UPSTREAM CR44482 DOWNSTREAM CG31609 INTERGENIC
3L	13783444	3L_13783444_SNP [dm3] 3L_13790344_SNP [dm6]	A	G	2.563e^-4	0.769	INTRON bru-3
3R	26692058	3R_26692058_SNP [dm3] 3R_30866336_SNP [dm6]	T	A	2.580e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	26692087	3R_26692087_SNP [dm3] 3R_30866365_SNP [dm6]	C	T	2.580e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
4	1144117	4_1144117_INS [dm3] 4_1123491_INS [dm6]	T	TAGGTCTTTAAT...	2.593e^-4	0.772	UPSTREAM Cals & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3R	13938188	3R_13938188_SNP [dm3] 3R_18112466_SNP [dm6]	T	A	2.596e^-4	0.772	INTRON sr	TF binding site mE1_TFBS_HSA
3R	11924901	3R_11924901_SNP [dm3] 3R_16099179_SNP [dm6]	C	G	2.600e^-4	0.772	UPSTREAM Akt1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	4154349	3R_4154349_SNP [dm3] 3R_8328627_SNP [dm6]	C	T	2.601e^-4	0.772	INTRON Poxm
2L	2504775	2L_2504775_SNP [dm3] 2L_2504775_SNP [dm6]	T	A	2.603e^-4	0.772	INTERGENIC
3L	824121	3L_824121_SNP [dm3] 3L_824121_SNP [dm6]	T	C	2.616e^-4	0.775	INTERGENIC
X	8129885	X_8129885_SNP [dm3] X_8235852_SNP [dm6]	A	C	2.633e^-4	0.779	INTRON sdt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4327406	3L_4327406_SNP [dm3] 3L_4327406_SNP [dm6]	G	A	2.641e^-4	0.779	SYNONYMOUS_CODING Cip4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9759805	3R_9759805_SNP [dm3] 3R_13934083_SNP [dm6]	C	T	2.643e^-4	0.779	INTERGENIC
3R	6415438	3R_6415438_SNP [dm3] 3R_10589716_SNP [dm6]	T	A	2.650e^-4	0.78	INTRON hth	TF binding site mE1_TFBS_cad
3R	13418787	3R_13418787_SNP [dm3] 3R_17593065_SNP [dm6]	A	T	2.657e^-4	0.78	INTERGENIC
3R	12389280	3R_12389280_SNP [dm3] 3R_16563558_SNP [dm6]	G	C	2.657e^-4	0.78	INTRON CG42342	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10797562	X_10797562_SNP [dm3] X_10903529_SNP [dm6]	G	A	2.662e^-4	0.78	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	10581478	2L_10581478_SNP [dm3] 2L_10581478_SNP [dm6]	C	T	2.666e^-4	0.78	INTRON Trim9 & 1 other
2L	9165208	2L_9165208_SNP [dm3] 2L_9165208_SNP [dm6]	T	A	2.677e^-4	0.782	NON_SYNONYMOUS_CODING CG13108 DOWNSTREAM CG9586
3L	4274418	3L_4274418_SNP [dm3] 3L_4274418_SNP [dm6]	T	A	2.689e^-4	0.782	INTRON CG1273
2L	7462235	2L_7462235_SNP [dm3] 2L_7462235_SNP [dm6]	C	T	2.692e^-4	0.782	NON_SYNONYMOUS_CODING Gr28b	TF binding site mE1_TFBS_cad
2R	5159255	2R_5159255_SNP [dm3] 2R_9271750_SNP [dm6]	G	A	2.694e^-4	0.782	INTRON Pkn
X	5447211	X_5447211_SNP [dm3] X_5553178_SNP [dm6]	T	C	2.697e^-4	0.782	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
3L	5687833	3L_5687833_SNP [dm3] 3L_5694733_SNP [dm6]	T	A	2.702e^-4	0.782	INTRON sif
2R	12316414	2R_12316414_SNP [dm3] 2R_16428909_SNP [dm6]	A	T	2.705e^-4	0.782	INTRON Sema-2b	TF binding site BDTNP1_TFBS_twi
3R	15862927	3R_15862927_SNP [dm3] 3R_20037205_SNP [dm6]	A	C	2.710e^-4	0.782	UTR_3_PRIME CG17193
3L	5279912	3L_5279912_SNP [dm3] 3L_5286812_SNP [dm6]	T	C	2.722e^-4	0.782	INTERGENIC
2R	1381457	2R_1381457_SNP [dm3] 2R_5493952_SNP [dm6]	T	G	2.728e^-4	0.782	NON_SYNONYMOUS_CODING CG30440
X	17359687	X_17359687_SNP [dm3] X_17465654_SNP [dm6]	A	T	2.729e^-4	0.782	INTRON CG43658
3L	3310030	3L_3310030_SNP [dm3] 3L_3310030_SNP [dm6]	A	T	2.731e^-4	0.782	INTRON ZnT63C
2L	13516042	2L_13516042_SNP [dm3] 2L_13516042_SNP [dm6]	T	G	2.745e^-4	0.782	INTRON B4	TF binding site BDTNP1_TFBS_twi
2R	13024786	2R_13024786_SNP [dm3] 2R_17137281_SNP [dm6]	T	C	2.746e^-4	0.782	UTR_5_PRIME CG11395 DOWNSTREAM CR44391 & 1 other
3R	25547001	3R_25547001_SNP [dm3] 3R_29721279_SNP [dm6]	C	T	2.763e^-4	0.782	SYNONYMOUS_CODING CG15506
2R	10459694	2R_10459694_SNP [dm3] 2R_14572189_SNP [dm6]	T	C	2.766e^-4	0.782	SPLICE_SITE_REGION LamC INTRON ttv & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3221503	2L_3221503_SNP [dm3] 2L_3221503_SNP [dm6]	A	T	2.772e^-4	0.782	INTERGENIC
X	18471754	X_18471754_SNP [dm3] X_18577721_SNP [dm6]	T	C	2.775e^-4	0.782	INTERGENIC
4	1071947	4_1071947_SNP [dm3] 4_1051321_SNP [dm6]	T	A	2.779e^-4	0.782	UTR_5_PRIME CaMKII INTRON CaMKII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3L	11773798	3L_11773798_SNP [dm3] 3L_11780698_SNP [dm6]	A	G	2.780e^-4	0.782	SYNONYMOUS_CODING Pi3K68D DOWNSTREAM CG14131
2L	17850357	2L_17850357_SNP [dm3] 2L_17850357_SNP [dm6]	C	T	2.786e^-4	0.782	INTRON CadN2
X	5682543	X_5682543_SNP [dm3] X_5788510_SNP [dm6]	A	T	2.789e^-4	0.782	UTR_3_PRIME CG42699 UPSTREAM CG15767
3R	16565035	3R_16565035_SNP [dm3] 3R_20739313_SNP [dm6]	A	G	2.803e^-4	0.782	UPSTREAM CG17267 & 1 other DOWNSTREAM cdc2c INTERGENIC
3L	1176664	3L_1176664_SNP [dm3] 3L_1176664_SNP [dm6]	G	A	2.824e^-4	0.782	INTRON bab2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9719880	3L_9719880_SNP [dm3] 3L_9726780_SNP [dm6]	C	G	2.824e^-4	0.782	UPSTREAM Naa60 DOWNSTREAM defl INTERGENIC	TF binding site mE1_TFBS_HSA
2L	13445765	2L_13445765_SNP [dm3] 2L_13445765_SNP [dm6]	G	C	2.828e^-4	0.782	UPSTREAM CG9267 INTRON CG42784	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	13445766	2L_13445766_SNP [dm3] 2L_13445766_SNP [dm6]	A	G	2.828e^-4	0.782	UPSTREAM CG9267 INTRON CG42784	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	8532622	2L_8532622_SNP [dm3] 2L_8532622_SNP [dm6]	T	G	2.831e^-4	0.782	INTRON CG17834
3R	15863274	3R_15863274_SNP [dm3] 3R_20037552_SNP [dm6]	C	T	2.833e^-4	0.782	UTR_3_PRIME CG17193
3L	10263528	3L_10263528_SNP [dm3] 3L_10270428_SNP [dm6]	G	A	2.833e^-4	0.782	DOWNSTREAM CR45242 INTERGENIC	regulatory region REDfly_CRMs
3L	14496898	3L_14496898_SNP [dm3] 3L_14503798_SNP [dm6]	C	T	2.838e^-4	0.782	INTRON bbg
3L	2705412	3L_2705412_SNP [dm3] 3L_2705412_SNP [dm6]	T	C	2.843e^-4	0.782	INTRON Fife
3L	4273993	3L_4273993_SNP [dm3] 3L_4273993_SNP [dm6]	C	T	2.844e^-4	0.782	SYNONYMOUS_CODING CG1273
3L	4274053	3L_4274053_SNP [dm3] 3L_4274053_SNP [dm6]	A	T	2.844e^-4	0.782	SYNONYMOUS_CODING CG1273
3R	1017037	3R_1017037_SNP [dm3] 3R_5191315_SNP [dm6]	G	A	2.851e^-4	0.782	INTRON cno
3L	2789864	3L_2789864_SNP [dm3] 3L_2789864_SNP [dm6]	A	G	2.857e^-4	0.782	SYNONYMOUS_CODING CG43444	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	11356365	X_11356365_SNP [dm3] X_11462332_SNP [dm6]	C	T	2.861e^-4	0.782	INTRON CG43155
3R	26680400	3R_26680400_SNP [dm3] 3R_30854678_SNP [dm6]	A	C	2.866e^-4	0.782	DOWNSTREAM tll INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	13024769	2R_13024769_SNP [dm3] 2R_17137264_SNP [dm6]	C	T	2.867e^-4	0.782	START_GAINED CG11395 UTR_5_PRIME CG11395 DOWNSTREAM CR44391 & 1 other
2R	13024778	2R_13024778_SNP [dm3] 2R_17137273_SNP [dm6]	G	A	2.867e^-4	0.782	UTR_5_PRIME CG11395 DOWNSTREAM CR44391 & 1 other
2R	17958745	2R_17958745_SNP [dm3] 2R_22071240_SNP [dm6]	T	C	2.868e^-4	0.782	START_GAINED CG11475 UTR_5_PRIME CG11475 UTR_3_PRIME CG11474 DOWNSTREAM CG11474
3L	19682544	3L_19682544_SNP [dm3] 3L_19689444_SNP [dm6]	G	T	2.872e^-4	0.782	DOWNSTREAM verm INTRON Gbeta76C	TF binding site mE1_TFBS_cad
2R	5018900	2R_5018900_SNP [dm3] 2R_9131395_SNP [dm6]	C	T	2.874e^-4	0.782	INTRON CG18659	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	19363364	2L_19363364_SNP [dm3] 2L_19363364_SNP [dm6]	C	A	2.878e^-4	0.782	UPSTREAM dnt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4778556	3L_4778556_SNP [dm3] 3L_4778556_SNP [dm6]	G	C	2.882e^-4	0.782	INTRON RhoGEF64C
2R	19648841	2R_19648841_DEL [dm3] 2R_23761318_DEL [dm6]	AGC	T	2.883e^-4	0.782	INTRON CG9850
3R	17761836	3R_17761836_INS [dm3] 3R_21936114_INS [dm6]	A	AC	2.884e^-4	0.782	INTERGENIC
3L	5260477	3L_5260477_SNP [dm3] 3L_5267377_SNP [dm6]	A	T	2.886e^-4	0.782	INTRON shep
3L	9969052	3L_9969052_SNP [dm3] 3L_9975952_SNP [dm6]	G	A	2.893e^-4	0.782	INTRON dpr6
3L	3266982	3L_3266982_SNP [dm3] 3L_3266982_SNP [dm6]	G	C	2.895e^-4	0.782	INTRON ckd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	6022313	3L_6022313_SNP [dm3] 3L_6029213_SNP [dm6]	G	A	2.901e^-4	0.782	INTERGENIC
3L	6022394	3L_6022394_SNP [dm3] 3L_6029294_SNP [dm6]	T	C	2.901e^-4	0.782	INTERGENIC
3R	17663688	3R_17663688_SNP [dm3] 3R_21837966_SNP [dm6]	C	T	2.922e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9376198	3R_9376198_SNP [dm3] 3R_13550476_SNP [dm6]	C	T	2.922e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	14120972	2R_14120972_SNP [dm3] 2R_18233467_SNP [dm6]	G	T	2.923e^-4	0.782	UTR_5_PRIME fj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	14274295	2R_14274295_SNP [dm3] 2R_18386790_SNP [dm6]	C	T	2.932e^-4	0.782	INTRON IM2
X	13378824	X_13378824_SNP [dm3] X_13484791_SNP [dm6]	T	C	2.934e^-4	0.782	INTRON Neto	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17340595	2L_17340595_SNP [dm3] 2L_17340595_SNP [dm6]	T	C	2.935e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9604389	3R_9604389_SNP [dm3] 3R_13778667_SNP [dm6]	A	G	2.935e^-4	0.782	UTR_3_PRIME CG9297 UPSTREAM CG9288 & 1 other	TF binding site mE1_TFBS_Trl
3R	9604392	3R_9604392_SNP [dm3] 3R_13778670_SNP [dm6]	A	C	2.935e^-4	0.782	UTR_3_PRIME CG9297 UPSTREAM CG9288 & 1 other	TF binding site mE1_TFBS_Trl
X	17350043	X_17350043_SNP [dm3] X_17456010_SNP [dm6]	G	A	2.941e^-4	0.782	DOWNSTREAM CG43658 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19150336	3R_19150336_SNP [dm3] 3R_23324614_SNP [dm6]	C	G	2.945e^-4	0.782	INTRON pnt
3L	8852795	3L_8852795_SNP [dm3] 3L_8859695_SNP [dm6]	G	A	2.956e^-4	0.782	INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	4273957	3L_4273957_SNP [dm3] 3L_4273957_SNP [dm6]	C	G	2.958e^-4	0.782	SYNONYMOUS_CODING CG1273
3L	5694485	3L_5694485_SNP [dm3] 3L_5701385_SNP [dm6]	A	T	2.963e^-4	0.782	INTRON sif
3L	4781752	3L_4781752_SNP [dm3] 3L_4781752_SNP [dm6]	C	G	2.967e^-4	0.782	INTRON RhoGEF64C
3L	787429	3L_787429_SNP [dm3] 3L_787429_SNP [dm6]	T	C	2.974e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	15857832	3R_15857832_SNP [dm3] 3R_20032110_SNP [dm6]	C	G	2.977e^-4	0.782	SPLICE_SITE_REGION CG4936 SYNONYMOUS_CODING CG4936 UPSTREAM trem	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	21913494	2L_21913494_SNP [dm3] 2L_21913494_SNP [dm6]	A	G	2.982e^-4	0.782	DOWNSTREAM CG31600 INTERGENIC	transposable element FlyBase
3L	3129663	3L_3129663_SNP [dm3] 3L_3129663_SNP [dm6]	A	G	2.984e^-4	0.782	SYNONYMOUS_CODING CG11537
3R	18988900	3R_18988900_SNP [dm3] 3R_23163178_SNP [dm6]	A	T	2.991e^-4	0.782	INTERGENIC
3R	9188801	3R_9188801_INS [dm3] 3R_13363079_INS [dm6]	T	TT	2.994e^-4	0.782	INTRON poly
3R	9188833	3R_9188833_SNP [dm3] 3R_13363111_SNP [dm6]	G	C	2.994e^-4	0.782	INTRON poly
2L	9118348	2L_9118348_SNP [dm3] 2L_9118348_SNP [dm6]	G	A	2.996e^-4	0.782	INTERGENIC
3R	11180601	3R_11180601_SNP [dm3] 3R_15354879_SNP [dm6]	G	A	2.996e^-4	0.782	SYNONYMOUS_CODING Atg4b DOWNSTREAM CG5038	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8610140	2L_8610140_SNP [dm3] 2L_8610140_SNP [dm6]	A	G	2.997e^-4	0.782	INTRON Sema-1a
2R	19064349	2R_19064349_SNP [dm3] 2R_23176826_SNP [dm6]	G	T	3.005e^-4	0.782	INTRON CG34371
2R	10459707	2R_10459707_SNP [dm3] 2R_14572202_SNP [dm6]	G	A	3.014e^-4	0.782	INTRON ttv & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10459806	2R_10459806_SNP [dm3] 2R_14572301_SNP [dm6]	G	T	3.017e^-4	0.782	SYNONYMOUS_CODING LamC INTRON ttv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7998620	2L_7998620_SNP [dm3] 2L_7998620_SNP [dm6]	G	A	3.019e^-4	0.782	UPSTREAM CG7227 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	9719711	3L_9719711_SNP [dm3] 3L_9726611_SNP [dm6]	A	G	3.021e^-4	0.782	UTR_3_PRIME defl UPSTREAM Naa60	TF binding site mE1_TFBS_HSA
X	10861638	X_10861638_SNP [dm3] X_10967605_SNP [dm6]	T	C	3.028e^-4	0.782	UPSTREAM C901 DOWNSTREAM CG42339 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	10312288	3R_10312288_SNP [dm3] 3R_14486566_SNP [dm6]	C	A	3.032e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8392823	3R_8392823_SNP [dm3] 3R_12567101_SNP [dm6]	T	C	3.044e^-4	0.782	INTRON Octbeta2R
4	1257109	4_1257109_INS [dm3] 4_1253383_INS [dm6]	T	TT	3.048e^-4	0.782	INTRON Caps	TF binding site BDTNP1_TFBS_dl
3R	20555328	3R_20555328_SNP [dm3] 3R_24729606_SNP [dm6]	A	T	3.055e^-4	0.782	INTRON tok
3L	5853823	3L_5853823_SNP [dm3] 3L_5860723_SNP [dm6]	G	T	3.062e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	14854262	3R_14854262_SNP [dm3] 3R_19028540_SNP [dm6]	C	A	3.077e^-4	0.782	NON_SYNONYMOUS_CODING gatA UPSTREAM P5cr DOWNSTREAM NP15.6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4679034	X_4679034_SNP [dm3] X_4785001_SNP [dm6]	G	A	3.078e^-4	0.782	SYNONYMOUS_CODING CG6978	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20175380	3L_20175380_SNP [dm3] 3L_20182280_SNP [dm6]	T	G	3.086e^-4	0.782	INTRON CG42674	TF binding site BDTNP1_TFBS_twi
2L	15083601	2L_15083601_SNP [dm3] 2L_15083601_SNP [dm6]	T	A	3.091e^-4	0.782	INTRON CG15270
2R	12513050	2R_12513050_SNP [dm3] 2R_16625545_SNP [dm6]	G	A	3.096e^-4	0.782	UTR_3_PRIME Alk DOWNSTREAM CG5065 & 1 other
X	20404575	X_20404575_SNP [dm3] X_20533548_SNP [dm6]	T	C	3.101e^-4	0.782	INTERGENIC
4	761022	4_761022_SNP [dm3] 4_740396_SNP [dm6]	T	A	3.101e^-4	0.782	INTRON bt
3R	22872157	3R_22872157_INS [dm3] 3R_27046435_INS [dm6]	C	CGTAC	3.109e^-4	0.782	INTRON RYa-R
3R	9760322	3R_9760322_SNP [dm3] 3R_13934600_SNP [dm6]	A	G	3.110e^-4	0.782	INTERGENIC
2L	6797703	2L_6797703_SNP [dm3] 2L_6797703_SNP [dm6]	G	C	3.118e^-4	0.782	UPSTREAM nrv2 INTRON nrv2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	8043623	2L_8043623_SNP [dm3] 2L_8043623_SNP [dm6]	T	G	3.122e^-4	0.782	UTR_5_PRIME CG7466 UPSTREAM RpL36A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9969062	3L_9969062_SNP [dm3] 3L_9975962_SNP [dm6]	A	G	3.124e^-4	0.782	INTRON dpr6
3L	9969068	3L_9969068_SNP [dm3] 3L_9975968_SNP [dm6]	C	T	3.124e^-4	0.782	INTRON dpr6
2L	8533537	2L_8533537_SNP [dm3] 2L_8533537_SNP [dm6]	C	A	3.128e^-4	0.782	INTRON CG17834	TF binding site mE1_TFBS_cad
2L	9199439	2L_9199439_SNP [dm3] 2L_9199439_SNP [dm6]	T	G	3.133e^-4	0.782	INTRON tai
3R	23590420	3R_23590420_SNP [dm3] 3R_27764698_SNP [dm6]	G	A	3.133e^-4	0.782	INTERGENIC
3L	8792094	3L_8792094_SNP [dm3] 3L_8798994_SNP [dm6]	T	A	3.134e^-4	0.782	DOWNSTREAM Fhos INTRON CG13310
3L	11458661	3L_11458661_SNP [dm3] 3L_11465561_SNP [dm6]	A	G	3.136e^-4	0.782	UPSTREAM CG6140 INTRON CG6140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	9204916	2L_9204916_SNP [dm3] 2L_9204916_SNP [dm6]	T	G	3.137e^-4	0.782	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	3985151	X_3985151_SNP [dm3] X_4091118_SNP [dm6]	G	A	3.143e^-4	0.782	UTR_3_PRIME CG43689 DOWNSTREAM CG43689
3R	22910222	3R_22910222_SNP [dm3] 3R_27084500_SNP [dm6]	T	G	3.148e^-4	0.782	INTRON Cpr97Ea	TF binding site mE1_TFBS_cad
3R	22910224	3R_22910224_DEL [dm3] 3R_27084502_DEL [dm6]	CTTTTT	C	3.148e^-4	0.782	INTRON Cpr97Ea	TF binding site mE1_TFBS_cad
3R	3070148	3R_3070148_SNP [dm3] 3R_7244426_SNP [dm6]	A	C	3.157e^-4	0.782	SYNONYMOUS_CODING CG1234 DOWNSTREAM CG14607
2L	20914880	2L_20914880_SNP [dm3] 2L_20914880_SNP [dm6]	G	T	3.163e^-4	0.782	INTRON sky & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_HSA transposable element FlyBase
3R	17888899	3R_17888899_SNP [dm3] 3R_22063177_SNP [dm6]	A	T	3.171e^-4	0.782	INTRON how
3R	9188878	3R_9188878_DEL [dm3] 3R_13363156_DEL [dm6]	GAGAGTAAACAAG...	G	3.174e^-4	0.782	INTRON poly
3R	4260033	3R_4260033_SNP [dm3] 3R_8434311_SNP [dm6]	T	A	3.174e^-4	0.782	INTRON CG45263
3R	26345851	3R_26345851_SNP [dm3] 3R_30520129_SNP [dm6]	T	C	3.178e^-4	0.782	INTRON jdp
3R	10012009	3R_10012009_SNP [dm3] 3R_14186287_SNP [dm6]	C	G	3.186e^-4	0.782	INTRON Dop1R1
X	13448658	X_13448658_SNP [dm3] X_13554625_SNP [dm6]	T	A	3.188e^-4	0.782	UPSTREAM CG11816 INTRON CG11816
3R	20822093	3R_20822093_SNP [dm3] 3R_24996371_SNP [dm6]	A	G	3.190e^-4	0.782	INTRON tnc	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	9188796	3R_9188796_SNP [dm3] 3R_13363074_SNP [dm6]	G	A	3.191e^-4	0.782	INTRON poly
3R	1045701	3R_1045701_SNP [dm3] 3R_5219979_SNP [dm6]	T	C	3.191e^-4	0.782	SYNONYMOUS_CODING CG1116 UTR_5_PRIME CG1116 UPSTREAM Prosbeta2R2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9079278	2L_9079278_SNP [dm3] 2L_9079278_SNP [dm6]	A	T	3.192e^-4	0.782	INTERGENIC
3R	15849311	3R_15849311_SNP [dm3] 3R_20023589_SNP [dm6]	G	A	3.193e^-4	0.782	SYNONYMOUS_CODING psidin	TF binding site mE1_TFBS_cad
X	13764038	X_13764038_SNP [dm3] X_13870005_SNP [dm6]	T	G	3.194e^-4	0.782	INTRON mamo
X	4797274	X_4797274_SNP [dm3] X_4903241_SNP [dm6]	G	A	3.194e^-4	0.782	INTRON CG42594
2L	9091216	2L_9091216_SNP [dm3] 2L_9091216_SNP [dm6]	G	T	3.227e^-4	0.783	INTERGENIC
3L	852822	3L_852822_SNP [dm3] 3L_852822_SNP [dm6]	A	G	3.239e^-4	0.783	UTR_3_PRIME dpr20 DOWNSTREAM CG13890
3L	10543377	3L_10543377_SNP [dm3] 3L_10550277_SNP [dm6]	A	G	3.241e^-4	0.783	INTRON A2bp1
3R	14879061	3R_14879061_SNP [dm3] 3R_19053339_SNP [dm6]	C	A	3.247e^-4	0.783	INTRON cdi
3L	1401429	3L_1401429_SNP [dm3] 3L_1401429_SNP [dm6]	A	G	3.248e^-4	0.783	UTR_3_PRIME CG32320 UPSTREAM tRNA:E4:62Ad & 1 other INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	12937601	3R_12937601_SNP [dm3] 3R_17111879_SNP [dm6]	T	C	3.251e^-4	0.783	INTRON cher
X	17372519	X_17372519_SNP [dm3] X_17478486_SNP [dm6]	T	C	3.256e^-4	0.783	INTRON CG43658
2L	13444540	2L_13444540_SNP [dm3] 2L_13444540_SNP [dm6]	C	A	3.264e^-4	0.783	SYNONYMOUS_CODING CG9267 INTRON CG42784
3L	2991498	3L_2991498_SNP [dm3] 3L_2991498_SNP [dm6]	G	A	3.264e^-4	0.783	INTERGENIC
3L	19218458	3L_19218458_SNP [dm3] 3L_19225358_SNP [dm6]	G	A	3.265e^-4	0.783	INTRON fz2
3L	11773748	3L_11773748_SNP [dm3] 3L_11780648_SNP [dm6]	G	A	3.267e^-4	0.783	DOWNSTREAM CG14131 INTRON Pi3K68D
3L	11773794	3L_11773794_SNP [dm3] 3L_11780694_SNP [dm6]	A	G	3.267e^-4	0.783	SYNONYMOUS_CODING Pi3K68D DOWNSTREAM CG14131
2R	1381214	2R_1381214_SNP [dm3] 2R_5493709_SNP [dm6]	G	A	3.269e^-4	0.783	INTRON CG30440
2R	13779640	2R_13779640_SNP [dm3] 2R_17892135_SNP [dm6]	C	T	3.269e^-4	0.783	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	17911006	3R_17911006_SNP [dm3] 3R_22085284_SNP [dm6]	G	A	3.271e^-4	0.783	DOWNSTREAM CG5778 INTERGENIC
3R	5621183	3R_5621183_DEL [dm3] 3R_9795461_DEL [dm6]	GTCTAAG	G	3.273e^-4	0.783	CODON_DELETION CG8516	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	12424968	3L_12424968_SNP [dm3] 3L_12431868_SNP [dm6]	T	A	3.292e^-4	0.783	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	15741684	X_15741684_SNP [dm3] X_15847651_SNP [dm6]	T	G	3.293e^-4	0.783	UTR_3_PRIME CG8578 DOWNSTREAM sun & 1 other
3L	5125631	3L_5125631_DEL [dm3] 3L_5132531_DEL [dm6]	CATATTGAG	C	3.293e^-4	0.783	DOWNSTREAM CG15213 & 1 other INTERGENIC
3L	1255986	3L_1255986_SNP [dm3] 3L_1255986_SNP [dm6]	T	A	3.299e^-4	0.783	UTR_3_PRIME CG9130 & 1 other UPSTREAM CG9134
3R	17731867	3R_17731867_SNP [dm3] 3R_21906145_SNP [dm6]	A	T	3.308e^-4	0.783	UTR_3_PRIME CG6678
X	8129879	X_8129879_SNP [dm3] X_8235846_SNP [dm6]	C	G	3.312e^-4	0.783	INTRON sdt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4296491	2L_4296491_SNP [dm3] 2L_4296491_SNP [dm6]	A	G	3.314e^-4	0.783	INTRON tutl
2R	18003880	2R_18003880_SNP [dm3] 2R_22116375_SNP [dm6]	T	G	3.315e^-4	0.783	UPSTREAM Vrp1 DOWNSTREAM CG30281 INTRON Vrp1
3R	18845087	3R_18845087_SNP [dm3] 3R_23019365_SNP [dm6]	T	A	3.328e^-4	0.783	INTERGENIC
3R	17761413	3R_17761413_SNP [dm3] 3R_21935691_SNP [dm6]	G	A	3.330e^-4	0.783	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14783011	3R_14783011_SNP [dm3] 3R_18957289_SNP [dm6]	A	G	3.335e^-4	0.783	INTRON CG42613 & 1 other
3L	20087402	3L_20087402_SNP [dm3] 3L_20094302_SNP [dm6]	T	A	3.337e^-4	0.783	INTERGENIC
3L	8139588	3L_8139588_SNP [dm3] 3L_8146488_SNP [dm6]	T	C	3.339e^-4	0.783	INTRON CG13676
2L	18989983	2L_18989983_SNP [dm3] 2L_18989983_SNP [dm6]	C	A	3.343e^-4	0.783	NON_SYNONYMOUS_CODING CG15170	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	14031328	3R_14031328_SNP [dm3] 3R_18205606_SNP [dm6]	T	A	3.344e^-4	0.783	INTRON CG7985
2R	20043242	2R_20043242_SNP [dm3] 2R_24155719_SNP [dm6]	A	C	3.346e^-4	0.783	INTRON Dat
X	12506658	X_12506658_SNP [dm3] X_12612625_SNP [dm6]	C	T	3.350e^-4	0.783	SYNONYMOUS_CODING CG2543 UPSTREAM CG1463 DOWNSTREAM CR45621 EXON CR45621	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	17372547	X_17372547_SNP [dm3] X_17478514_SNP [dm6]	G	C	3.350e^-4	0.783	INTRON CG43658
3R	22871082	3R_22871082_SNP [dm3] 3R_27045360_SNP [dm6]	G	A	3.352e^-4	0.783	INTRON RYa-R
3R	22871657	3R_22871657_SNP [dm3] 3R_27045935_SNP [dm6]	A	G	3.352e^-4	0.783	INTRON RYa-R
2R	17301666	2R_17301666_SNP [dm3] 2R_21414161_SNP [dm6]	T	C	3.358e^-4	0.783	INTRON Sdc
2R	7907495	2R_7907495_SNP [dm3] 2R_12019990_SNP [dm6]	A	G	3.358e^-4	0.783	UPSTREAM otk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24768028	3R_24768028_SNP [dm3] 3R_28942306_SNP [dm6]	T	G	3.366e^-4	0.784	INTRON CG14521
3L	5737451	3L_5737451_SNP [dm3] 3L_5744351_SNP [dm6]	C	T	3.376e^-4	0.785	UTR_3_PRIME sif INTRON sif
3R	5568698	3R_5568698_SNP [dm3] 3R_9742976_SNP [dm6]	C	T	3.383e^-4	0.785	UTR_3_PRIME CG34409 UPSTREAM CG31415 DOWNSTREAM Pnn
3R	15992615	3R_15992615_SNP [dm3] 3R_20166893_SNP [dm6]	C	A	3.412e^-4	0.785	INTERGENIC
2L	8533538	2L_8533538_SNP [dm3] 2L_8533538_SNP [dm6]	A	C	3.416e^-4	0.785	INTRON CG17834	TF binding site mE1_TFBS_cad
X	10822331	X_10822331_SNP [dm3] X_10928298_SNP [dm6]	A	G	3.416e^-4	0.785	SYNONYMOUS_CODING CG2145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6149502	3L_6149502_SNP [dm3] 3L_6156402_SNP [dm6]	G	C	3.417e^-4	0.785	DOWNSTREAM CG13297 INTERGENIC
3L	5734890	3L_5734890_SNP [dm3] 3L_5741790_SNP [dm6]	G	A	3.421e^-4	0.785	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo
3L	3309301	3L_3309301_SNP [dm3] 3L_3309301_SNP [dm6]	G	A	3.421e^-4	0.785	UPSTREAM ZnT63C INTRON ZnT63C
3R	11108010	3R_11108010_SNP [dm3] 3R_15282288_SNP [dm6]	A	G	3.423e^-4	0.785	INTRON Tm1	TF binding site mE1_TFBS_Trl
2L	5804721	2L_5804721_DEL [dm3] 2L_5804721_DEL [dm6]	AGGTATTAGCT...	A	3.430e^-4	0.785	UPSTREAM CG11034 DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3R	15863083	3R_15863083_SNP [dm3] 3R_20037361_SNP [dm6]	G	T	3.436e^-4	0.785	UTR_3_PRIME CG17193
3R	15863084	3R_15863084_SNP [dm3] 3R_20037362_SNP [dm6]	C	A	3.436e^-4	0.785	UTR_3_PRIME CG17193
2R	19064931	2R_19064931_SNP [dm3] 2R_23177408_SNP [dm6]	T	C	3.439e^-4	0.785	INTRON CG34371
2R	18282301	2R_18282301_SNP [dm3] 2R_22394796_SNP [dm6]	G	T	3.442e^-4	0.785	SYNONYMOUS_CODING babos DOWNSTREAM CG13506
3L	8019231	3L_8019231_SNP [dm3] 3L_8026131_SNP [dm6]	T	A	3.445e^-4	0.785	INTRON nmo
3R	12130649	3R_12130649_SNP [dm3] 3R_16304927_SNP [dm6]	G	A	3.445e^-4	0.785	UPSTREAM Zip89B DOWNSTREAM gish INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	12130761	3R_12130761_SNP [dm3] 3R_16305039_SNP [dm6]	C	T	3.445e^-4	0.785	UPSTREAM Zip89B DOWNSTREAM gish INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	9719952	3L_9719952_SNP [dm3] 3L_9726852_SNP [dm6]	C	T	3.458e^-4	0.785	UPSTREAM Naa60 DOWNSTREAM defl INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9719954	3L_9719954_SNP [dm3] 3L_9726854_SNP [dm6]	A	T	3.458e^-4	0.785	UPSTREAM Naa60 DOWNSTREAM defl INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14366517	2L_14366517_SNP [dm3] 2L_14366517_SNP [dm6]	T	C	3.461e^-4	0.785	UTR_3_PRIME spel1 DOWNSTREAM spel1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2104800	3L_2104800_DEL [dm3] 3L_2104800_DEL [dm6]	TC	T	3.461e^-4	0.785	INTRON sls	TF binding site mE1_TFBS_chinmo
3L	18026816	3L_18026816_INS [dm3] 3L_18033716_INS [dm6]	A	AA	3.465e^-4	0.785	INTRON Eip75B
3R	23496690	3R_23496690_SNP [dm3] 3R_27670968_SNP [dm6]	A	T	3.469e^-4	0.785	INTRON unc80
2L	11932083	2L_11932083_DEL [dm3] 2L_11932083_DEL [dm6]	AT	A	3.482e^-4	0.785	INTERGENIC
3R	20587585	3R_20587585_SNP [dm3] 3R_24761863_SNP [dm6]	A	G	3.485e^-4	0.785	INTRON AstA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18076104	2L_18076104_SNP [dm3] 2L_18076104_SNP [dm6]	T	C	3.489e^-4	0.785	INTERGENIC
3R	25464001	3R_25464001_SNP [dm3] 3R_29638279_SNP [dm6]	C	T	3.489e^-4	0.785	INTRON Dop1R2
3L	1752564	3L_1752564_SNP [dm3] 3L_1752564_SNP [dm6]	T	C	3.496e^-4	0.785	UTR_3_PRIME Cht2 DOWNSTREAM CG13921
3R	3028498	3R_3028498_SNP [dm3] 3R_7202776_SNP [dm6]	G	A	3.497e^-4	0.785	SPLICE_SITE_REGION CG14609 INTRON CG14609
2L	5793659	2L_5793659_SNP [dm3] 2L_5793659_SNP [dm6]	T	A	3.505e^-4	0.785	INTRON CG9171
3L	15532629	3L_15532629_SNP [dm3] 3L_15539529_SNP [dm6]	G	C	3.515e^-4	0.785	INTRON CrebA
2R	16496816	2R_16496816_SNP [dm3] 2R_20609311_SNP [dm6]	T	C	3.516e^-4	0.785	SYNONYMOUS_CODING Hil	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17817463	2R_17817463_SNP [dm3] 2R_21929958_SNP [dm6]	T	C	3.516e^-4	0.785	SYNONYMOUS_CODING Fili
3L	15764876	3L_15764876_SNP [dm3] 3L_15771776_SNP [dm6]	T	C	3.526e^-4	0.785	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	15784074	3L_15784074_SNP [dm3] 3L_15790974_SNP [dm6]	C	T	3.526e^-4	0.785	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3674495	3L_3674495_SNP [dm3] 3L_3674495_SNP [dm6]	G	T	3.527e^-4	0.785	INTERGENIC
2R	12270752	2R_12270752_SNP [dm3] 2R_16383247_SNP [dm6]	T	C	3.531e^-4	0.785	UTR_3_PRIME CG43187	transposable element FlyBase
4	667954	4_667954_SNP [dm3] 4_647328_SNP [dm6]	T	C	3.531e^-4	0.785	UPSTREAM CG9935 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	2504779	2L_2504779_SNP [dm3] 2L_2504779_SNP [dm6]	C	A	3.538e^-4	0.785	INTERGENIC
3L	15836076	3L_15836076_SNP [dm3] 3L_15842976_SNP [dm6]	G	A	3.546e^-4	0.785	DOWNSTREAM mir-263b INTRON CG32150
X	17016252	X_17016252_SNP [dm3] X_17122219_SNP [dm6]	C	T	3.547e^-4	0.785	INTRON CG5004	TF binding site BDTNP1_TFBS_twi
2R	6299587	2R_6299587_SNP [dm3] 2R_10412082_SNP [dm6]	A	T	3.557e^-4	0.785	UPSTREAM CG33475 INTRON CG42732
3L	7412326	3L_7412326_SNP [dm3] 3L_7419226_SNP [dm6]	T	C	3.558e^-4	0.785	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15507086	3L_15507086_SNP [dm3] 3L_15513986_SNP [dm6]	T	C	3.559e^-4	0.785	DOWNSTREAM Eip71CD INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	22913135	3R_22913135_SNP [dm3] 3R_27087413_SNP [dm6]	T	C	3.562e^-4	0.785	UPSTREAM Cpr97Ea INTRON Cpr97Ea
3L	4356724	3L_4356724_SNP [dm3] 3L_4356724_SNP [dm6]	A	T	3.571e^-4	0.786	INTRON Cip4
X	16609203	X_16609203_SNP [dm3] X_16715170_SNP [dm6]	C	T	3.587e^-4	0.789	SYNONYMOUS_CODING CG34325 DOWNSTREAM CG13008
3L	2557937	3L_2557937_SNP [dm3] 3L_2557937_SNP [dm6]	G	A	3.601e^-4	0.79	SYNONYMOUS_CODING msn
3L	6149497	3L_6149497_SNP [dm3] 3L_6156397_SNP [dm6]	A	T	3.603e^-4	0.79	DOWNSTREAM CG13297 INTERGENIC
3L	11458665	3L_11458665_SNP [dm3] 3L_11465565_SNP [dm6]	T	G	3.616e^-4	0.791	UPSTREAM CG6140 INTRON CG6140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	9969125	3L_9969125_SNP [dm3] 3L_9976025_SNP [dm6]	T	G	3.626e^-4	0.791	INTRON dpr6
3R	24138315	3R_24138315_SNP [dm3] 3R_28312593_SNP [dm6]	C	T	3.630e^-4	0.791	INTERGENIC
3R	13419102	3R_13419102_SNP [dm3] 3R_17593380_SNP [dm6]	G	C	3.632e^-4	0.791	INTERGENIC
3L	18103444	3L_18103444_SNP [dm3] 3L_18110344_SNP [dm6]	A	C	3.645e^-4	0.791	NON_SYNONYMOUS_CODING mus304 UPSTREAM CG5147	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	6250289	3L_6250289_DEL [dm3] 3L_6257189_DEL [dm6]	TT	T	3.648e^-4	0.791	UPSTREAM Best2 DOWNSTREAM CG10163 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4778553	3L_4778553_SNP [dm3] 3L_4778553_SNP [dm6]	T	G	3.648e^-4	0.791	INTRON RhoGEF64C
X	17016283	X_17016283_SNP [dm3] X_17122250_SNP [dm6]	C	T	3.648e^-4	0.791	INTRON CG5004	TF binding site BDTNP1_TFBS_twi
3R	15848978	3R_15848978_SNP [dm3] 3R_20023256_SNP [dm6]	A	G	3.649e^-4	0.791	INTRON psidin	TF binding site mE1_TFBS_cad
2L	5797150	2L_5797150_SNP [dm3] 2L_5797150_SNP [dm6]	T	A	3.651e^-4	0.791	INTRON CG9171
X	12281469	X_12281469_INS [dm3] X_12387436_INS [dm6]	A	AT	3.653e^-4	0.791	INTERGENIC
2L	8435175	2L_8435175_SNP [dm3] 2L_8435175_SNP [dm6]	G	A	3.658e^-4	0.791	SYNONYMOUS_CODING D12
2L	17893376	2L_17893376_INS [dm3] 2L_17893376_INS [dm6]	CCGC	ATATG	3.661e^-4	0.791	UPSTREAM CR43420 INTERGENIC
2L	5885289	2L_5885289_SNP [dm3] 2L_5885289_SNP [dm6]	A	C	3.674e^-4	0.792	NON_SYNONYMOUS_CODING CG43185 UPSTREAM Sfp26Ac & 1 other DOWNSTREAM CG44574
2L	9401049	2L_9401049_SNP [dm3] 2L_9401049_SNP [dm6]	T	A	3.675e^-4	0.792	INTRON Shawl
3L	10388927	3L_10388927_SNP [dm3] 3L_10395827_SNP [dm6]	A	T	3.681e^-4	0.792	INTERGENIC
2L	12990420	2L_12990420_SNP [dm3] 2L_12990420_SNP [dm6]	G	A	3.687e^-4	0.792	INTERGENIC
2R	3446569	2R_3446569_SNP [dm3] 2R_7559064_SNP [dm6]	A	C	3.689e^-4	0.792	INTRON Corin	TF binding site mE1_TFBS_cad
2L	5550229	2L_5550229_SNP [dm3] 2L_5550229_SNP [dm6]	G	A	3.696e^-4	0.792	SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14789737	3R_14789737_INS [dm3] 3R_18964015_INS [dm6]	C	CG	3.699e^-4	0.792	INTRON CG42613 & 1 other
3L	10388893	3L_10388893_SNP [dm3] 3L_10395793_SNP [dm6]	G	A	3.703e^-4	0.792	INTERGENIC
3R	12365072	3R_12365072_SNP [dm3] 3R_16539350_SNP [dm6]	G	T	3.712e^-4	0.792	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
4	934649	4_934649_SNP [dm3] 4_914023_SNP [dm6]	T	A	3.713e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	5457645	X_5457645_SNP [dm3] X_5563612_SNP [dm6]	C	T	3.714e^-4	0.792	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2R	13631055	2R_13631055_SNP [dm3] 2R_17743550_SNP [dm6]	G	A	3.715e^-4	0.792	UTR_3_PRIME CG4996 UPSTREAM Ir54a
3L	16152386	3L_16152386_SNP [dm3] 3L_16159286_SNP [dm6]	A	T	3.726e^-4	0.793	INTRON CG5151
2R	4484987	2R_4484987_SNP [dm3] 2R_8597482_SNP [dm6]	G	T	3.731e^-4	0.793	UTR_3_PRIME CG8735 DOWNSTREAM CG8735
3L	5712543	3L_5712543_SNP [dm3] 3L_5719443_SNP [dm6]	G	A	3.738e^-4	0.794	UPSTREAM snoRNA:Me18S-A1494 INTRON sif
3R	15847972	3R_15847972_SNP [dm3] 3R_20022250_SNP [dm6]	G	A	3.747e^-4	0.794	SYNONYMOUS_CODING psidin UPSTREAM CG4433	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	10712111	3L_10712111_SNP [dm3] 3L_10719011_SNP [dm6]	A	G	3.764e^-4	0.794	INTERGENIC
3L	9969120	3L_9969120_SNP [dm3] 3L_9976020_SNP [dm6]	C	A	3.771e^-4	0.794	INTRON dpr6
3L	7161229	3L_7161229_SNP [dm3] 3L_7168129_SNP [dm6]	C	T	3.773e^-4	0.794	INTRON Dscam2
3R	26937499	3R_26937499_SNP [dm3] 3R_31111777_SNP [dm6]	G	A	3.775e^-4	0.794	INTERGENIC	TF binding site mE1_TFBS_inv
3R	6405544	3R_6405544_SNP [dm3] 3R_10579822_SNP [dm6]	C	T	3.777e^-4	0.794	INTRON hth
2L	17935302	2L_17935302_SNP [dm3] 2L_17935302_SNP [dm6]	A	T	3.779e^-4	0.794	INTERGENIC
3R	13734526	3R_13734526_SNP [dm3] 3R_17908804_SNP [dm6]	A	G	3.783e^-4	0.794	UTR_5_PRIME Rim
4	624894	4_624894_SNP [dm3] 4_604268_SNP [dm6]	A	T	3.791e^-4	0.794	INTRON onecut	TF binding site mE1_TFBS_cad
2L	1659998	2L_1659998_SNP [dm3] 2L_1659998_SNP [dm6]	G	T	3.791e^-4	0.794	INTRON chinmo
3L	9969051	3L_9969051_SNP [dm3] 3L_9975951_SNP [dm6]	C	A	3.793e^-4	0.794	INTRON dpr6
2L	9175907	2L_9175907_INS [dm3] 2L_9175907_INS [dm6]	A	AATCTAATAT	3.804e^-4	0.794	UPSTREAM tai INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	26345086	3R_26345086_SNP [dm3] 3R_30519364_SNP [dm6]	G	A	3.814e^-4	0.794	DOWNSTREAM jdp INTRON jdp
2L	1320395	2L_1320395_SNP [dm3] 2L_1320395_SNP [dm6]	C	T	3.817e^-4	0.794	INTERGENIC
3L	9969131	3L_9969131_SNP [dm3] 3L_9976031_SNP [dm6]	C	A	3.835e^-4	0.794	INTRON dpr6
3L	3674493	3L_3674493_SNP [dm3] 3L_3674493_SNP [dm6]	T	C	3.840e^-4	0.794	INTERGENIC
3L	3090480	3L_3090480_SNP [dm3] 3L_3090480_SNP [dm6]	A	C	3.845e^-4	0.794	UPSTREAM snRNA:U5:63BC DOWNSTREAM Cht7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	8043393	2L_8043393_SNP [dm3] 2L_8043393_SNP [dm6]	G	A	3.850e^-4	0.794	UPSTREAM CG7466 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9112662	2L_9112662_SNP [dm3] 2L_9112662_SNP [dm6]	G	T	3.861e^-4	0.794	INTRON Or30a
3R	26464797	3R_26464797_SNP [dm3] 3R_30639075_SNP [dm6]	C	T	3.863e^-4	0.794	INTERGENIC
2L	8772611	2L_8772611_SNP [dm3] 2L_8772611_SNP [dm6]	C	A	3.863e^-4	0.794	UPSTREAM CG9465 DOWNSTREAM CG9466 INTERGENIC
2L	4342650	2L_4342650_SNP [dm3] 2L_4342650_SNP [dm6]	G	A	3.866e^-4	0.794	SYNONYMOUS_CODING Atet	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17362965	3R_17362965_SNP [dm3] 3R_21537243_SNP [dm6]	T	C	3.867e^-4	0.794	INTERGENIC	TF binding site mE1_TFBS_cad
2L	21913638	2L_21913638_SNP [dm3] 2L_21913638_SNP [dm6]	A	G	3.872e^-4	0.794	DOWNSTREAM CG31600 INTERGENIC	transposable element FlyBase
3R	14852619	3R_14852619_SNP [dm3] 3R_19026897_SNP [dm6]	G	C	3.874e^-4	0.794	NON_SYNONYMOUS_CODING gatA UPSTREAM NP15.6 DOWNSTREAM CG14285	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	10148058	2L_10148058_SNP [dm3] 2L_10148058_SNP [dm6]	T	G	3.875e^-4	0.794	INTRON CG44153 & 1 other
3R	22661054	3R_22661054_SNP [dm3] 3R_26835332_SNP [dm6]	T	A	3.877e^-4	0.794	INTRON Tl
3R	22661885	3R_22661885_SNP [dm3] 3R_26836163_SNP [dm6]	A	T	3.877e^-4	0.794	INTRON Tl
3R	22662011	3R_22662011_SNP [dm3] 3R_26836289_SNP [dm6]	C	T	3.877e^-4	0.794	INTRON Tl
3R	23582415	3R_23582415_SNP [dm3] 3R_27756693_SNP [dm6]	C	T	3.883e^-4	0.794	INTERGENIC
2L	5333845	2L_5333845_SNP [dm3] 2L_5333845_SNP [dm6]	G	A	3.893e^-4	0.794	INTRON fusl
2R	18649315	2R_18649315_SNP [dm3] 2R_22761810_SNP [dm6]	G	A	3.899e^-4	0.794	INTRON CG42260	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	18649316	2R_18649316_SNP [dm3] 2R_22761811_SNP [dm6]	C	G	3.899e^-4	0.794	INTRON CG42260	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	2458050	2L_2458050_SNP [dm3] 2L_2458050_SNP [dm6]	C	T	3.901e^-4	0.794	SYNONYMOUS_CODING dpp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20554932	3R_20554932_SNP [dm3] 3R_24729210_SNP [dm6]	C	T	3.902e^-4	0.794	INTRON tok
2R	17994254	2R_17994254_SNP [dm3] 2R_22106749_SNP [dm6]	G	T	3.905e^-4	0.794	UTR_3_PRIME Vrp1 DOWNSTREAM CG6613 & 1 other
3L	787337	3L_787337_SNP [dm3] 3L_787337_SNP [dm6]	T	C	3.907e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	9485940	2L_9485940_SNP [dm3] 2L_9485940_SNP [dm6]	G	C	3.909e^-4	0.794	INTERGENIC
3L	3674383	3L_3674383_SNP [dm3] 3L_3674383_SNP [dm6]	G	T	3.921e^-4	0.794	INTERGENIC
3L	3674419	3L_3674419_SNP [dm3] 3L_3674419_SNP [dm6]	A	C	3.921e^-4	0.794	INTERGENIC
3L	6149518	3L_6149518_SNP [dm3] 3L_6156418_SNP [dm6]	A	G	3.922e^-4	0.794	DOWNSTREAM CG13297 INTERGENIC
3R	11107642	3R_11107642_SNP [dm3] 3R_15281920_SNP [dm6]	C	G	3.937e^-4	0.794	INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	4399887	3L_4399887_SNP [dm3] 3L_4399887_SNP [dm6]	T	A	3.938e^-4	0.794	INTRON slow	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	10310599	2L_10310599_SNP [dm3] 2L_10310599_SNP [dm6]	T	G	3.938e^-4	0.794	UTR_5_PRIME Cdk5alpha DOWNSTREAM CG5385	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	10310614	2L_10310614_SNP [dm3] 2L_10310614_SNP [dm6]	G	T	3.938e^-4	0.794	UTR_5_PRIME Cdk5alpha DOWNSTREAM CG5385	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	8613579	3L_8613579_SNP [dm3] 3L_8620479_SNP [dm6]	C	T	3.944e^-4	0.794	SYNONYMOUS_CODING S-Lap2
3L	14772689	3L_14772689_SNP [dm3] 3L_14779589_SNP [dm6]	G	A	3.946e^-4	0.794	INTRON bmm
2R	8623665	2R_8623665_INS [dm3] 2R_12736160_INS [dm6]	G	GTTGCCCAG	3.949e^-4	0.794	INTRON CG42663	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10712156	3L_10712156_INS [dm3] 3L_10719056_INS [dm6]	T	TC	3.952e^-4	0.794	INTERGENIC
3L	12140577	3L_12140577_SNP [dm3] 3L_12147477_SNP [dm6]	A	T	3.954e^-4	0.794	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2R	2882279	2R_2882279_SNP [dm3] 2R_6994774_SNP [dm6]	T	C	3.964e^-4	0.794	DOWNSTREAM CG30159 INTRON Tsp42Ea	TF binding site mE1_TFBS_Trl
4	641107	4_641107_SNP [dm3] 4_620481_SNP [dm6]	A	C	3.964e^-4	0.794	UTR_3_PRIME Eph DOWNSTREAM Eph
2R	17475417	2R_17475417_SNP [dm3] 2R_21587912_SNP [dm6]	T	A	3.978e^-4	0.794	INTERGENIC
2R	7708205	2R_7708205_SNP [dm3] 2R_11820700_SNP [dm6]	A	C	3.980e^-4	0.794	INTERGENIC
3L	18166002	3L_18166002_SNP [dm3] 3L_18172902_SNP [dm6]	T	C	3.982e^-4	0.794	INTRON W	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
3L	18166011	3L_18166011_SNP [dm3] 3L_18172911_SNP [dm6]	C	T	3.982e^-4	0.794	INTRON W	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
2R	19401666	2R_19401666_DEL [dm3] 2R_23514143_DEL [dm6]	GGGGGG	G	3.989e^-4	0.794	INTERGENIC
3R	14853539	3R_14853539_SNP [dm3] 3R_19027817_SNP [dm6]	T	C	3.990e^-4	0.794	SYNONYMOUS_CODING NP15.6 INTRON gatA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12140821	3L_12140821_SNP [dm3] 3L_12147721_SNP [dm6]	C	T	3.991e^-4	0.794	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2L	4091151	2L_4091151_SNP [dm3] 2L_4091151_SNP [dm6]	T	A	4.004e^-4	0.794	INTRON ed
2L	16955798	2L_16955798_SNP [dm3] 2L_16955798_SNP [dm6]	A	T	4.004e^-4	0.794	INTERGENIC
2R	17769429	2R_17769429_SNP [dm3] 2R_21881924_SNP [dm6]	C	A	4.005e^-4	0.794	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_sens
4	830148	4_830148_INS [dm3] 4_809522_INS [dm6]	G	GAG	4.008e^-4	0.794	INTRON Sox102F
2L	10089130	2L_10089130_SNP [dm3] 2L_10089130_SNP [dm6]	T	A	4.019e^-4	0.794	INTRON CG44153
3L	2534598	3L_2534598_SNP [dm3] 3L_2534598_SNP [dm6]	G	T	4.028e^-4	0.794	INTRON Spn
2L	2858867	2L_2858867_SNP [dm3] 2L_2858867_SNP [dm6]	T	C	4.035e^-4	0.794	INTRON CG2991	TF binding site BDTNP1_TFBS_dl
3L	6022304	3L_6022304_SNP [dm3] 3L_6029204_SNP [dm6]	T	C	4.039e^-4	0.794	INTERGENIC
3L	10712258	3L_10712258_SNP [dm3] 3L_10719158_SNP [dm6]	T	C	4.052e^-4	0.794	INTERGENIC
3L	10597124	3L_10597124_SNP [dm3] 3L_10604024_SNP [dm6]	T	C	4.053e^-4	0.794	INTERGENIC	TF binding site mE1_TFBS_inv
3R	25457606	3R_25457606_SNP [dm3] 3R_29631884_SNP [dm6]	C	T	4.064e^-4	0.794	UTR_3_PRIME Dop1R2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	2135255	X_2135255_SNP [dm3] X_2241222_SNP [dm6]	C	T	4.064e^-4	0.794	SYNONYMOUS_CODING kz UPSTREAM fs_1_K10	TF binding site mE1_TFBS_sens
2L	10581388	2L_10581388_SNP [dm3] 2L_10581388_SNP [dm6]	G	T	4.072e^-4	0.794	INTRON Trim9 & 1 other
2L	10581390	2L_10581390_SNP [dm3] 2L_10581390_SNP [dm6]	A	T	4.072e^-4	0.794	INTRON Trim9 & 1 other
2L	10581392	2L_10581392_SNP [dm3] 2L_10581392_SNP [dm6]	A	T	4.072e^-4	0.794	INTRON Trim9 & 1 other
3L	8117607	3L_8117607_SNP [dm3] 3L_8124507_SNP [dm6]	A	G	4.075e^-4	0.794	UTR_5_PRIME CG7550 DOWNSTREAM mRpL36 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	5035471	X_5035471_SNP [dm3] X_5141438_SNP [dm6]	C	G	4.077e^-4	0.794	INTRON rg & 1 other
3R	5997082	3R_5997082_SNP [dm3] 3R_10171360_SNP [dm6]	C	G	4.079e^-4	0.794	UTR_3_PRIME CG12814 UPSTREAM Best1	TF binding site BDTNP1_TFBS_dl
2R	8623667	2R_8623667_SNP [dm3] 2R_12736162_SNP [dm6]	G	A	4.080e^-4	0.794	INTRON CG42663	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15862932	3R_15862932_SNP [dm3] 3R_20037210_SNP [dm6]	A	G	4.080e^-4	0.794	UTR_3_PRIME CG17193
2R	19064951	2R_19064951_SNP [dm3] 2R_23177428_SNP [dm6]	A	G	4.083e^-4	0.794	INTRON CG34371
3L	15768144	3L_15768144_SNP [dm3] 3L_15775044_SNP [dm6]	A	T	4.092e^-4	0.794	INTERGENIC
3L	15770811	3L_15770811_SNP [dm3] 3L_15777711_SNP [dm6]	T	C	4.092e^-4	0.794	INTERGENIC
3L	15771520	3L_15771520_SNP [dm3] 3L_15778420_SNP [dm6]	A	G	4.092e^-4	0.794	INTERGENIC
2L	2001634	2L_2001634_SNP [dm3] 2L_2001634_SNP [dm6]	C	A	4.095e^-4	0.794	INTRON CG33543 EXON CR43464
3R	14683424	3R_14683424_SNP [dm3] 3R_18857702_SNP [dm6]	T	C	4.106e^-4	0.795	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15532671	3L_15532671_SNP [dm3] 3L_15539571_SNP [dm6]	A	G	4.121e^-4	0.797	INTRON CrebA
2L	18865862	2L_18865862_SNP [dm3] 2L_18865862_SNP [dm6]	A	G	4.135e^-4	0.798	INTRON tup	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14388540	2R_14388540_SNP [dm3] 2R_18501035_SNP [dm6]	T	G	4.137e^-4	0.798	INTERGENIC
3L	4743493	3L_4743493_SNP [dm3] 3L_4743493_SNP [dm6]	T	C	4.137e^-4	0.798	INTRON RhoGEF64C
2R	18005338	2R_18005338_SNP [dm3] 2R_22117833_SNP [dm6]	G	C	4.149e^-4	0.799	INTRON Vrp1
2L	10716125	2L_10716125_SNP [dm3] 2L_10716125_SNP [dm6]	A	G	4.162e^-4	0.799	INTERGENIC
3L	19219033	3L_19219033_SNP [dm3] 3L_19225933_SNP [dm6]	C	A	4.168e^-4	0.799	INTRON fz2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8252592	3L_8252592_DEL [dm3] 3L_8259492_DEL [dm6]	ATAGCG	T	4.168e^-4	0.799	INTRON Dscam4
3L	8252604	3L_8252604_SNP [dm3] 3L_8259504_SNP [dm6]	G	A	4.168e^-4	0.799	INTRON Dscam4
3L	9536200	3L_9536200_SNP [dm3] 3L_9543100_SNP [dm6]	A	G	4.171e^-4	0.799	SYNONYMOUS_CODING Ir67a
3R	11107876	3R_11107876_SNP [dm3] 3R_15282154_SNP [dm6]	C	T	4.182e^-4	0.8	INTRON Tm1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26628355	3R_26628355_SNP [dm3] 3R_30802633_SNP [dm6]	C	A	4.189e^-4	0.8	INTRON wts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	14133965	X_14133965_SNP [dm3] X_14239932_SNP [dm6]	G	T	4.190e^-4	0.8	UTR_3_PRIME CG1434 DOWNSTREAM mRNA-cap	TF binding site mE1_TFBS_cad
2L	10151359	2L_10151359_SNP [dm3] 2L_10151359_SNP [dm6]	C	A	4.213e^-4	0.803	NON_SYNONYMOUS_CODING CG4839 INTRON CG44153
X	5250675	X_5250675_SNP [dm3] X_5356642_SNP [dm6]	T	A	4.215e^-4	0.803	INTRON SK
2R	10238238	2R_10238238_SNP [dm3] 2R_14350733_SNP [dm6]	T	A	4.232e^-4	0.806	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	689793	3L_689793_SNP [dm3] 3L_689793_SNP [dm6]	C	T	4.238e^-4	0.806	SYNONYMOUS_CODING CG32483 UPSTREAM RabX6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	18282385	2R_18282385_SNP [dm3] 2R_22394880_SNP [dm6]	T	A	4.244e^-4	0.806	DOWNSTREAM CG13506 INTRON babos
2R	16578812	2R_16578812_SNP [dm3] 2R_20691307_SNP [dm6]	T	A	4.253e^-4	0.807	UPSTREAM CR44659 INTERGENIC
3L	12140736	3L_12140736_SNP [dm3] 3L_12147636_SNP [dm6]	G	T	4.256e^-4	0.807	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3L	17195303	3L_17195303_SNP [dm3] 3L_17202203_SNP [dm6]	C	T	4.259e^-4	0.807	INTRON Rbp6
X	19891335	X_19891335_DEL [dm3] X_19997302_DEL [dm6]	GG	G	4.267e^-4	0.808	INTERGENIC
3L	11743531	3L_11743531_DEL [dm3] 3L_11750431_DEL [dm6]	CA	G	4.277e^-4	0.808	UPSTREAM Gr68a INTRON CG6024
2L	9079121	2L_9079121_SNP [dm3] 2L_9079121_SNP [dm6]	C	T	4.286e^-4	0.808	INTERGENIC
2R	18033666	2R_18033666_SNP [dm3] 2R_22146161_SNP [dm6]	A	C	4.288e^-4	0.808	INTRON a
2R	12270744	2R_12270744_SNP [dm3] 2R_16383239_SNP [dm6]	G	C	4.307e^-4	0.808	UTR_3_PRIME CG43187	transposable element FlyBase
X	11227060	X_11227060_SNP [dm3] X_11333027_SNP [dm6]	C	T	4.309e^-4	0.808	SYNONYMOUS_CODING CG1657	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2688750	2L_2688750_SNP [dm3] 2L_2688750_SNP [dm6]	G	T	4.316e^-4	0.808	INTRON CG31690
3R	6498599	3R_6498599_SNP [dm3] 3R_10672877_SNP [dm6]	T	A	4.317e^-4	0.808	INTERGENIC
X	10787015	X_10787015_SNP [dm3] X_10892982_SNP [dm6]	A	G	4.319e^-4	0.808	UPSTREAM CR44524 DOWNSTREAM CR45617 INTERGENIC
2L	10581383	2L_10581383_SNP [dm3] 2L_10581383_SNP [dm6]	T	A	4.321e^-4	0.808	INTRON Trim9 & 1 other
3L	4273733	3L_4273733_INS [dm3] 3L_4273733_INS [dm6]	G	GGCTGG	4.326e^-4	0.808	INTRON CG1273
2R	5162228	2R_5162228_SNP [dm3] 2R_9274723_SNP [dm6]	C	T	4.338e^-4	0.808	UTR_5_PRIME Pkn INTRON Pkn	TF binding site mE1_TFBS_Trl
3L	4356417	3L_4356417_SNP [dm3] 3L_4356417_SNP [dm6]	G	T	4.338e^-4	0.808	INTRON Cip4
3L	3335935	3L_3335935_SNP [dm3] 3L_3335935_SNP [dm6]	T	C	4.343e^-4	0.808	UPSTREAM CG14969 & 2 others DOWNSTREAM Drsl6 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	18260131	2L_18260131_SNP [dm3] 2L_18260131_SNP [dm6]	A	G	4.343e^-4	0.808	DOWNSTREAM CR44901 INTRON CG42750	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6797732	2L_6797732_SNP [dm3] 2L_6797732_SNP [dm6]	A	T	4.347e^-4	0.808	UPSTREAM nrv2 INTRON nrv2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8252611	3L_8252611_SNP [dm3] 3L_8259511_SNP [dm6]	T	A	4.351e^-4	0.808	INTRON Dscam4
2L	9175911	2L_9175911_SNP [dm3] 2L_9175911_SNP [dm6]	T	C	4.355e^-4	0.808	UPSTREAM tai INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl

By genomic position
Variant impact
Gene name

Microbiota_OTU121 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results