DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.919e^-14)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.01468

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

7246 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	8659161	X_8659161_SNP [dm3] X_8765128_SNP [dm6]	T	G	1.056e^-15	1.618e^-9	INTRON Lim1
2L	6413441	2L_6413441_SNP [dm3] 2L_6413441_SNP [dm6]	A	G	2.737e^-15	1.618e^-9	SYNONYMOUS_CODING CG13982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1787036	2L_1787036_SNP [dm3] 2L_1787036_SNP [dm6]	G	T	3.586e^-15	1.618e^-9	INTERGENIC
2L	1790695	2L_1790695_SNP [dm3] 2L_1790695_SNP [dm6]	A	G	3.586e^-15	1.618e^-9	SYNONYMOUS_CODING Gr22c UPSTREAM Gr22d
2R	18400913	2R_18400913_SNP [dm3] 2R_22513408_SNP [dm6]	T	C	4.348e^-15	1.618e^-9	UTR_5_PRIME px INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	7526993	2L_7526993_SNP [dm3] 2L_7526993_SNP [dm6]	G	A	7.602e^-15	2.076e^-9	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1763897	2L_1763897_SNP [dm3] 2L_1763897_SNP [dm6]	C	T	7.810e^-15	2.076e^-9	INTERGENIC
2L	1793752	2L_1793752_SNP [dm3] 2L_1793752_SNP [dm6]	G	A	1.481e^-13	3.444e^-8	SYNONYMOUS_CODING Gr22a UPSTREAM Gr22b
2L	13334128	2L_13334128_SNP [dm3] 2L_13334128_SNP [dm6]	A	G	2.299e^-12	3.773e^-7	INTERGENIC
3R	26885771	3R_26885771_DEL [dm3] 3R_31060049_DEL [dm6]	CG	C	2.765e^-12	3.773e^-7	INTRON dco	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26887006	3R_26887006_SNP [dm3] 3R_31061284_SNP [dm6]	A	G	2.765e^-12	3.773e^-7	UPSTREAM dco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_zfh1
3R	26887051	3R_26887051_SNP [dm3] 3R_31061329_SNP [dm6]	G	A	2.765e^-12	3.773e^-7	UPSTREAM dco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_zfh1
3R	26887125	3R_26887125_SNP [dm3] 3R_31061403_SNP [dm6]	G	A	2.765e^-12	3.773e^-7	UPSTREAM dco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_zfh1
2R	4584918	2R_4584918_SNP [dm3] 2R_8697413_SNP [dm6]	T	A	2.839e^-12	3.773e^-7	INTRON CG8738	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26886973	3R_26886973_SNP [dm3] 3R_31061251_SNP [dm6]	T	A	3.956e^-12	4.566e^-7	UPSTREAM dco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_zfh1
3L	16796994	3L_16796994_SNP [dm3] 3L_16803894_SNP [dm6]	C	T	4.276e^-12	4.566e^-7	INTRON CG9674	TF binding site mE1_TFBS_cad
2R	4584917	2R_4584917_SNP [dm3] 2R_8697412_SNP [dm6]	A	T	4.297e^-12	4.566e^-7	INTRON CG8738	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26885196	3R_26885196_SNP [dm3] 3R_31059474_SNP [dm6]	A	G	4.418e^-12	4.566e^-7	INTRON dco	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	15264038	2L_15264038_SNP [dm3] 2L_15264038_SNP [dm6]	G	A	6.059e^-12	5.932e^-7	NON_SYNONYMOUS_CODING yuri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2L	20686492	2L_20686492_SNP [dm3] 2L_20686492_SNP [dm6]	G	C	7.103e^-12	6.607e^-7	UTR_3_PRIME Hr38	TF binding site mE1_TFBS_cad
3R	26887249	3R_26887249_SNP [dm3] 3R_31061527_SNP [dm6]	G	T	1.376e^-11	1.219e^-6	UPSTREAM dco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
2L	15973668	2L_15973668_SNP [dm3] 2L_15973668_SNP [dm6]	A	G	1.533e^-11	1.296e^-6	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	7526992	2L_7526992_SNP [dm3] 2L_7526992_SNP [dm6]	G	A	2.290e^-11	1.630e^-6	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3802880	2L_3802880_SNP [dm3] 2L_3802880_SNP [dm6]	T	A	2.490e^-11	1.630e^-6	UPSTREAM Reph DOWNSTREAM CG3921 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	15980134	2L_15980134_SNP [dm3] 2L_15980134_SNP [dm6]	A	T	2.800e^-11	1.630e^-6	UTR_3_PRIME CG10839
2L	15973885	2L_15973885_SNP [dm3] 2L_15973885_SNP [dm6]	G	C	2.921e^-11	1.630e^-6	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	12494835	2R_12494835_SNP [dm3] 2R_16607330_SNP [dm6]	C	G	3.012e^-11	1.630e^-6	UPSTREAM CG5065 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	14751162	2R_14751162_SNP [dm3] 2R_18863657_SNP [dm6]	C	G	3.047e^-11	1.630e^-6	UPSTREAM CG43070 DOWNSTREAM CG43069 & 1 other INTERGENIC
3R	4449736	3R_4449736_DEL [dm3] 3R_8624014_DEL [dm6]	TT	T	3.705e^-11	1.630e^-6	INTRON 5-HT2B
2L	1785888	2L_1785888_SNP [dm3] 2L_1785888_SNP [dm6]	A	C	4.117e^-11	1.630e^-6	DOWNSTREAM Gr22e INTERGENIC
2L	1785984	2L_1785984_DEL [dm3] 2L_1785984_DEL [dm6]	TTTTATAA	T	4.117e^-11	1.630e^-6	DOWNSTREAM Gr22e INTERGENIC
2L	1786123	2L_1786123_DEL [dm3] 2L_1786123_DEL [dm6]	GACATCCAATCGTTT...	C	4.117e^-11	1.630e^-6	DOWNSTREAM Gr22e INTERGENIC
2L	1786521	2L_1786521_SNP [dm3] 2L_1786521_SNP [dm6]	C	T	4.117e^-11	1.630e^-6	INTERGENIC
2L	1786865	2L_1786865_SNP [dm3] 2L_1786865_SNP [dm6]	T	C	4.117e^-11	1.630e^-6	INTERGENIC
2L	1787046	2L_1787046_SNP [dm3] 2L_1787046_SNP [dm6]	C	T	4.117e^-11	1.630e^-6	INTERGENIC
2L	1787055	2L_1787055_SNP [dm3] 2L_1787055_SNP [dm6]	T	C	4.117e^-11	1.630e^-6	INTERGENIC
2L	1787068	2L_1787068_SNP [dm3] 2L_1787068_SNP [dm6]	A	G	4.117e^-11	1.630e^-6	INTERGENIC
2L	1787218	2L_1787218_SNP [dm3] 2L_1787218_SNP [dm6]	A	G	4.117e^-11	1.630e^-6	INTERGENIC
2L	1787379	2L_1787379_SNP [dm3] 2L_1787379_SNP [dm6]	G	A	4.117e^-11	1.630e^-6	INTERGENIC
2L	1789310	2L_1789310_SNP [dm3] 2L_1789310_SNP [dm6]	G	C	4.117e^-11	1.630e^-6	INTRON Gr22d
2L	1789438	2L_1789438_SNP [dm3] 2L_1789438_SNP [dm6]	A	G	4.117e^-11	1.630e^-6	SYNONYMOUS_CODING Gr22d
2L	1789733	2L_1789733_SNP [dm3] 2L_1789733_SNP [dm6]	T	G	4.117e^-11	1.630e^-6	STOP_LOST Gr22d DOWNSTREAM Gr22c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1789736	2L_1789736_SNP [dm3] 2L_1789736_SNP [dm6]	G	A	4.117e^-11	1.630e^-6	NON_SYNONYMOUS_CODING Gr22d DOWNSTREAM Gr22c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1789777	2L_1789777_SNP [dm3] 2L_1789777_SNP [dm6]	C	T	4.117e^-11	1.630e^-6	STOP_GAINED Gr22d DOWNSTREAM Gr22c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1790209	2L_1790209_SNP [dm3] 2L_1790209_SNP [dm6]	C	T	4.117e^-11	1.630e^-6	SYNONYMOUS_CODING Gr22d DOWNSTREAM Gr22c
2L	1790259	2L_1790259_SNP [dm3] 2L_1790259_SNP [dm6]	C	T	4.117e^-11	1.630e^-6	NON_SYNONYMOUS_CODING Gr22d DOWNSTREAM Gr22c
2L	1790735	2L_1790735_SNP [dm3] 2L_1790735_SNP [dm6]	T	G	4.117e^-11	1.630e^-6	NON_SYNONYMOUS_CODING Gr22c UPSTREAM Gr22d
2R	17316620	2R_17316620_SNP [dm3] 2R_21429115_SNP [dm6]	G	T	4.943e^-11	1.913e^-6	INTRON Sdc	TF binding site BDTNP1_TFBS_sna
2L	1787664	2L_1787664_SNP [dm3] 2L_1787664_SNP [dm6]	C	A	5.224e^-11	1.913e^-6	INTERGENIC
2L	1790540	2L_1790540_SNP [dm3] 2L_1790540_SNP [dm6]	C	T	5.869e^-11	1.913e^-6	UPSTREAM Gr22d DOWNSTREAM Gr22c INTERGENIC
2L	1787751	2L_1787751_SNP [dm3] 2L_1787751_SNP [dm6]	T	A	5.880e^-11	1.913e^-6	INTERGENIC
2L	1787752	2L_1787752_SNP [dm3] 2L_1787752_SNP [dm6]	G	T	5.880e^-11	1.913e^-6	INTERGENIC
2L	1787785	2L_1787785_SNP [dm3] 2L_1787785_SNP [dm6]	T	G	5.880e^-11	1.913e^-6	INTERGENIC
2L	1788302	2L_1788302_SNP [dm3] 2L_1788302_SNP [dm6]	A	G	5.880e^-11	1.913e^-6	DOWNSTREAM Gr22d INTERGENIC
2L	1788690	2L_1788690_SNP [dm3] 2L_1788690_SNP [dm6]	A	G	5.880e^-11	1.913e^-6	DOWNSTREAM Gr22d INTERGENIC
2L	1789936	2L_1789936_SNP [dm3] 2L_1789936_SNP [dm6]	C	T	5.880e^-11	1.913e^-6	NON_SYNONYMOUS_CODING Gr22d DOWNSTREAM Gr22c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1789954	2L_1789954_SNP [dm3] 2L_1789954_SNP [dm6]	G	C	5.880e^-11	1.913e^-6	SYNONYMOUS_CODING Gr22d DOWNSTREAM Gr22c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1789108	2L_1789108_SNP [dm3] 2L_1789108_SNP [dm6]	A	T	5.963e^-11	1.913e^-6	DOWNSTREAM Gr22d INTERGENIC
2L	1788059	2L_1788059_SNP [dm3] 2L_1788059_SNP [dm6]	T	C	6.071e^-11	1.914e^-6	INTERGENIC
2L	6413307	2L_6413307_SNP [dm3] 2L_6413307_SNP [dm6]	T	C	6.387e^-11	1.980e^-6	SYNONYMOUS_CODING CG13982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3800092	2R_3800092_INS [dm3] 2R_7912587_INS [dm6]	C	CAGC	6.897e^-11	2.103e^-6	INTRON CG30377
2L	1786155	2L_1786155_SNP [dm3] 2L_1786155_SNP [dm6]	A	T	7.309e^-11	2.193e^-6	DOWNSTREAM Gr22e INTERGENIC
3L	525159	3L_525159_SNP [dm3] 3L_525159_SNP [dm6]	G	T	7.478e^-11	2.208e^-6	INTRON klar
2L	1789815	2L_1789815_SNP [dm3] 2L_1789815_SNP [dm6]	C	T	8.102e^-11	2.331e^-6	NON_SYNONYMOUS_CODING Gr22d DOWNSTREAM Gr22c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1800193	2L_1800193_SNP [dm3] 2L_1800193_SNP [dm6]	T	A	8.144e^-11	2.331e^-6	INTERGENIC	TF binding site mE1_TFBS_inv
3L	11174708	3L_11174708_SNP [dm3] 3L_11181608_SNP [dm6]	G	T	9.014e^-11	2.541e^-6	INTRON GlcAT-P
3L	20699322	3L_20699322_SNP [dm3] 3L_20706222_SNP [dm6]	A	C	1.028e^-10	2.854e^-6	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	1800209	2L_1800209_SNP [dm3] 2L_1800209_SNP [dm6]	G	A	1.069e^-10	2.926e^-6	INTERGENIC	TF binding site mE1_TFBS_inv
3L	4009347	3L_4009347_SNP [dm3] 3L_4009347_SNP [dm6]	C	T	1.263e^-10	3.355e^-6	INTERGENIC
2R	12494877	2R_12494877_SNP [dm3] 2R_16607372_SNP [dm6]	T	C	1.280e^-10	3.355e^-6	UPSTREAM CG5065 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	12495000	2R_12495000_SNP [dm3] 2R_16607495_SNP [dm6]	A	G	1.280e^-10	3.355e^-6	UPSTREAM CG5065 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	12474587	3L_12474587_INS [dm3] 3L_12481487_INS [dm6]	C	CATCA	1.521e^-10	3.930e^-6	INTRON CG10663
3L	12479306	3L_12479306_SNP [dm3] 3L_12486206_SNP [dm6]	C	A	2.274e^-10	5.795e^-6	SYNONYMOUS_CODING CG33725 DOWNSTREAM CG10660	TF binding site BDTNP1_TFBS_twi
2R	11980063	2R_11980063_SNP [dm3] 2R_16092558_SNP [dm6]	G	A	2.384e^-10	5.995e^-6	INTRON Dg
3L	17541363	3L_17541363_SNP [dm3] 3L_17548263_SNP [dm6]	G	T	4.301e^-10	1.000e^-5	SYNONYMOUS_CODING Jon74E
3L	17541378	3L_17541378_SNP [dm3] 3L_17548278_SNP [dm6]	C	T	4.301e^-10	1.000e^-5	SYNONYMOUS_CODING Jon74E
3L	2805769	3L_2805769_SNP [dm3] 3L_2805769_SNP [dm6]	G	T	4.301e^-10	1.000e^-5	INTRON CG43444
3L	2805775	3L_2805775_DEL [dm3] 3L_2805775_DEL [dm6]	TGCATTTTTT	T	4.301e^-10	1.000e^-5	INTRON CG43444
3L	2813433	3L_2813433_SNP [dm3] 3L_2813433_SNP [dm6]	C	T	4.301e^-10	1.000e^-5	INTRON CG43444
X	3273509	X_3273509_SNP [dm3] X_3379476_SNP [dm6]	T	C	4.301e^-10	1.000e^-5	INTRON dm & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7812325	2L_7812325_DEL [dm3] 2L_7812325_DEL [dm6]	GATAGT	G	4.435e^-10	1.017e^-5	INTRON LanB1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12725988	2R_12725988_SNP [dm3] 2R_16838483_SNP [dm6]	G	A	4.484e^-10	1.017e^-5	EXON CR43650	TF binding site BDTNP1_TFBS_Med
3L	3052228	3L_3052228_SNP [dm3] 3L_3052228_SNP [dm6]	C	A	6.031e^-10	1.352e^-5	UPSTREAM CG1271 DOWNSTREAM CG32485 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10117509	3L_10117509_SNP [dm3] 3L_10124409_SNP [dm6]	C	T	6.450e^-10	1.352e^-5	INTRON dpr6	TF binding site mE1_TFBS_sens
3L	12041051	3L_12041051_SNP [dm3] 3L_12047951_SNP [dm6]	G	T	6.450e^-10	1.352e^-5	INTRON rols
3L	1095870	3L_1095870_SNP [dm3] 3L_1095870_SNP [dm6]	C	T	6.499e^-10	1.352e^-5	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18698025	X_18698025_SNP [dm3] X_18803992_SNP [dm6]	T	C	6.499e^-10	1.352e^-5	DOWNSTREAM CR44841 INTRON Pk17E	TF binding site BDTNP1_TFBS_twi
3L	11526925	3L_11526925_SNP [dm3] 3L_11533825_SNP [dm6]	G	A	6.530e^-10	1.352e^-5	INTRON Mob2	TF binding site BDTNP1_TFBS_dl
3L	11526941	3L_11526941_SNP [dm3] 3L_11533841_SNP [dm6]	C	T	6.530e^-10	1.352e^-5	INTRON Mob2	TF binding site BDTNP1_TFBS_dl
3L	11307999	3L_11307999_SNP [dm3] 3L_11314899_SNP [dm6]	G	C	6.541e^-10	1.352e^-5	UPSTREAM CR44361 INTERGENIC
X	13253737	X_13253737_SNP [dm3] X_13359704_SNP [dm6]	T	A	7.294e^-10	1.491e^-5	INTRON Syt12
2L	7836009	2L_7836009_SNP [dm3] 2L_7836009_SNP [dm6]	T	A	8.315e^-10	1.652e^-5	INTERGENIC
2L	14352406	2L_14352406_SNP [dm3] 2L_14352406_SNP [dm6]	A	T	8.712e^-10	1.652e^-5	NON_SYNONYMOUS_CODING CG43052 UPSTREAM l_2_34Fc DOWNSTREAM l_2_34Fd
2L	9121703	2L_9121703_SNP [dm3] 2L_9121703_SNP [dm6]	C	A	8.726e^-10	1.652e^-5	EXON CR44616	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	3793075	2R_3793075_SNP [dm3] 2R_7905570_SNP [dm6]	A	G	8.743e^-10	1.652e^-5	NON_SYNONYMOUS_CODING CG30377	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9675094	2L_9675094_SNP [dm3] 2L_9675094_SNP [dm6]	T	A	8.781e^-10	1.652e^-5	INTERGENIC
2L	9675096	2L_9675096_SNP [dm3] 2L_9675096_SNP [dm6]	C	T	8.781e^-10	1.652e^-5	INTERGENIC
3L	4511509	3L_4511509_SNP [dm3] 3L_4511509_SNP [dm6]	A	G	8.791e^-10	1.652e^-5	SYNONYMOUS_CODING Tie
X	16704138	X_16704138_SNP [dm3] X_16810105_SNP [dm6]	A	T	8.791e^-10	1.652e^-5	UPSTREAM CR44053 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3099420	2L_3099420_SNP [dm3] 2L_3099420_SNP [dm6]	G	A	9.281e^-10	1.711e^-5	INTRON toc

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By genomic position
Variant impact
Gene name

Microbiota_OTU110 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results