DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.919e^-14)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.01468

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

7246 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	8659161	X_8659161_SNP [dm3] X_8765128_SNP [dm6]	T	G	1.056e^-15	1.618e^-9	INTRON Lim1
2L	6413441	2L_6413441_SNP [dm3] 2L_6413441_SNP [dm6]	A	G	2.737e^-15	1.618e^-9	SYNONYMOUS_CODING CG13982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1787036	2L_1787036_SNP [dm3] 2L_1787036_SNP [dm6]	G	T	3.586e^-15	1.618e^-9	INTERGENIC
2L	1790695	2L_1790695_SNP [dm3] 2L_1790695_SNP [dm6]	A	G	3.586e^-15	1.618e^-9	SYNONYMOUS_CODING Gr22c UPSTREAM Gr22d
2R	18400913	2R_18400913_SNP [dm3] 2R_22513408_SNP [dm6]	T	C	4.348e^-15	1.618e^-9	UTR_5_PRIME px INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	7526993	2L_7526993_SNP [dm3] 2L_7526993_SNP [dm6]	G	A	7.602e^-15	2.076e^-9	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1763897	2L_1763897_SNP [dm3] 2L_1763897_SNP [dm6]	C	T	7.810e^-15	2.076e^-9	INTERGENIC
2L	1793752	2L_1793752_SNP [dm3] 2L_1793752_SNP [dm6]	G	A	1.481e^-13	3.444e^-8	SYNONYMOUS_CODING Gr22a UPSTREAM Gr22b
2L	13334128	2L_13334128_SNP [dm3] 2L_13334128_SNP [dm6]	A	G	2.299e^-12	3.773e^-7	INTERGENIC
3R	26885771	3R_26885771_DEL [dm3] 3R_31060049_DEL [dm6]	CG	C	2.765e^-12	3.773e^-7	INTRON dco	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26887006	3R_26887006_SNP [dm3] 3R_31061284_SNP [dm6]	A	G	2.765e^-12	3.773e^-7	UPSTREAM dco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_zfh1
3R	26887051	3R_26887051_SNP [dm3] 3R_31061329_SNP [dm6]	G	A	2.765e^-12	3.773e^-7	UPSTREAM dco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_zfh1
3R	26887125	3R_26887125_SNP [dm3] 3R_31061403_SNP [dm6]	G	A	2.765e^-12	3.773e^-7	UPSTREAM dco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_zfh1
2R	4584918	2R_4584918_SNP [dm3] 2R_8697413_SNP [dm6]	T	A	2.839e^-12	3.773e^-7	INTRON CG8738	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26886973	3R_26886973_SNP [dm3] 3R_31061251_SNP [dm6]	T	A	3.956e^-12	4.566e^-7	UPSTREAM dco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_zfh1
3L	16796994	3L_16796994_SNP [dm3] 3L_16803894_SNP [dm6]	C	T	4.276e^-12	4.566e^-7	INTRON CG9674	TF binding site mE1_TFBS_cad
2R	4584917	2R_4584917_SNP [dm3] 2R_8697412_SNP [dm6]	A	T	4.297e^-12	4.566e^-7	INTRON CG8738	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26885196	3R_26885196_SNP [dm3] 3R_31059474_SNP [dm6]	A	G	4.418e^-12	4.566e^-7	INTRON dco	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	15264038	2L_15264038_SNP [dm3] 2L_15264038_SNP [dm6]	G	A	6.059e^-12	5.932e^-7	NON_SYNONYMOUS_CODING yuri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2L	20686492	2L_20686492_SNP [dm3] 2L_20686492_SNP [dm6]	G	C	7.103e^-12	6.607e^-7	UTR_3_PRIME Hr38	TF binding site mE1_TFBS_cad
3R	26887249	3R_26887249_SNP [dm3] 3R_31061527_SNP [dm6]	G	T	1.376e^-11	1.219e^-6	UPSTREAM dco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
2L	15973668	2L_15973668_SNP [dm3] 2L_15973668_SNP [dm6]	A	G	1.533e^-11	1.296e^-6	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	7526992	2L_7526992_SNP [dm3] 2L_7526992_SNP [dm6]	G	A	2.290e^-11	1.630e^-6	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3802880	2L_3802880_SNP [dm3] 2L_3802880_SNP [dm6]	T	A	2.490e^-11	1.630e^-6	UPSTREAM Reph DOWNSTREAM CG3921 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	15980134	2L_15980134_SNP [dm3] 2L_15980134_SNP [dm6]	A	T	2.800e^-11	1.630e^-6	UTR_3_PRIME CG10839
2L	15973885	2L_15973885_SNP [dm3] 2L_15973885_SNP [dm6]	G	C	2.921e^-11	1.630e^-6	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	12494835	2R_12494835_SNP [dm3] 2R_16607330_SNP [dm6]	C	G	3.012e^-11	1.630e^-6	UPSTREAM CG5065 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	14751162	2R_14751162_SNP [dm3] 2R_18863657_SNP [dm6]	C	G	3.047e^-11	1.630e^-6	UPSTREAM CG43070 DOWNSTREAM CG43069 & 1 other INTERGENIC
3R	4449736	3R_4449736_DEL [dm3] 3R_8624014_DEL [dm6]	TT	T	3.705e^-11	1.630e^-6	INTRON 5-HT2B
2L	1785888	2L_1785888_SNP [dm3] 2L_1785888_SNP [dm6]	A	C	4.117e^-11	1.630e^-6	DOWNSTREAM Gr22e INTERGENIC
2L	1785984	2L_1785984_DEL [dm3] 2L_1785984_DEL [dm6]	TTTTATAA	T	4.117e^-11	1.630e^-6	DOWNSTREAM Gr22e INTERGENIC
2L	1786123	2L_1786123_DEL [dm3] 2L_1786123_DEL [dm6]	GACATCCAATCGTTT...	C	4.117e^-11	1.630e^-6	DOWNSTREAM Gr22e INTERGENIC
2L	1786521	2L_1786521_SNP [dm3] 2L_1786521_SNP [dm6]	C	T	4.117e^-11	1.630e^-6	INTERGENIC
2L	1786865	2L_1786865_SNP [dm3] 2L_1786865_SNP [dm6]	T	C	4.117e^-11	1.630e^-6	INTERGENIC
2L	1787046	2L_1787046_SNP [dm3] 2L_1787046_SNP [dm6]	C	T	4.117e^-11	1.630e^-6	INTERGENIC
2L	1787055	2L_1787055_SNP [dm3] 2L_1787055_SNP [dm6]	T	C	4.117e^-11	1.630e^-6	INTERGENIC
2L	1787068	2L_1787068_SNP [dm3] 2L_1787068_SNP [dm6]	A	G	4.117e^-11	1.630e^-6	INTERGENIC
2L	1787218	2L_1787218_SNP [dm3] 2L_1787218_SNP [dm6]	A	G	4.117e^-11	1.630e^-6	INTERGENIC
2L	1787379	2L_1787379_SNP [dm3] 2L_1787379_SNP [dm6]	G	A	4.117e^-11	1.630e^-6	INTERGENIC
2L	1789310	2L_1789310_SNP [dm3] 2L_1789310_SNP [dm6]	G	C	4.117e^-11	1.630e^-6	INTRON Gr22d
2L	1789438	2L_1789438_SNP [dm3] 2L_1789438_SNP [dm6]	A	G	4.117e^-11	1.630e^-6	SYNONYMOUS_CODING Gr22d
2L	1789733	2L_1789733_SNP [dm3] 2L_1789733_SNP [dm6]	T	G	4.117e^-11	1.630e^-6	STOP_LOST Gr22d DOWNSTREAM Gr22c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1789736	2L_1789736_SNP [dm3] 2L_1789736_SNP [dm6]	G	A	4.117e^-11	1.630e^-6	NON_SYNONYMOUS_CODING Gr22d DOWNSTREAM Gr22c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1789777	2L_1789777_SNP [dm3] 2L_1789777_SNP [dm6]	C	T	4.117e^-11	1.630e^-6	STOP_GAINED Gr22d DOWNSTREAM Gr22c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1790209	2L_1790209_SNP [dm3] 2L_1790209_SNP [dm6]	C	T	4.117e^-11	1.630e^-6	SYNONYMOUS_CODING Gr22d DOWNSTREAM Gr22c
2L	1790259	2L_1790259_SNP [dm3] 2L_1790259_SNP [dm6]	C	T	4.117e^-11	1.630e^-6	NON_SYNONYMOUS_CODING Gr22d DOWNSTREAM Gr22c
2L	1790735	2L_1790735_SNP [dm3] 2L_1790735_SNP [dm6]	T	G	4.117e^-11	1.630e^-6	NON_SYNONYMOUS_CODING Gr22c UPSTREAM Gr22d
2R	17316620	2R_17316620_SNP [dm3] 2R_21429115_SNP [dm6]	G	T	4.943e^-11	1.913e^-6	INTRON Sdc	TF binding site BDTNP1_TFBS_sna
2L	1787664	2L_1787664_SNP [dm3] 2L_1787664_SNP [dm6]	C	A	5.224e^-11	1.913e^-6	INTERGENIC
2L	1790540	2L_1790540_SNP [dm3] 2L_1790540_SNP [dm6]	C	T	5.869e^-11	1.913e^-6	UPSTREAM Gr22d DOWNSTREAM Gr22c INTERGENIC
2L	1787751	2L_1787751_SNP [dm3] 2L_1787751_SNP [dm6]	T	A	5.880e^-11	1.913e^-6	INTERGENIC
2L	1787752	2L_1787752_SNP [dm3] 2L_1787752_SNP [dm6]	G	T	5.880e^-11	1.913e^-6	INTERGENIC
2L	1787785	2L_1787785_SNP [dm3] 2L_1787785_SNP [dm6]	T	G	5.880e^-11	1.913e^-6	INTERGENIC
2L	1788302	2L_1788302_SNP [dm3] 2L_1788302_SNP [dm6]	A	G	5.880e^-11	1.913e^-6	DOWNSTREAM Gr22d INTERGENIC
2L	1788690	2L_1788690_SNP [dm3] 2L_1788690_SNP [dm6]	A	G	5.880e^-11	1.913e^-6	DOWNSTREAM Gr22d INTERGENIC
2L	1789936	2L_1789936_SNP [dm3] 2L_1789936_SNP [dm6]	C	T	5.880e^-11	1.913e^-6	NON_SYNONYMOUS_CODING Gr22d DOWNSTREAM Gr22c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1789954	2L_1789954_SNP [dm3] 2L_1789954_SNP [dm6]	G	C	5.880e^-11	1.913e^-6	SYNONYMOUS_CODING Gr22d DOWNSTREAM Gr22c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1789108	2L_1789108_SNP [dm3] 2L_1789108_SNP [dm6]	A	T	5.963e^-11	1.913e^-6	DOWNSTREAM Gr22d INTERGENIC
2L	1788059	2L_1788059_SNP [dm3] 2L_1788059_SNP [dm6]	T	C	6.071e^-11	1.914e^-6	INTERGENIC
2L	6413307	2L_6413307_SNP [dm3] 2L_6413307_SNP [dm6]	T	C	6.387e^-11	1.980e^-6	SYNONYMOUS_CODING CG13982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3800092	2R_3800092_INS [dm3] 2R_7912587_INS [dm6]	C	CAGC	6.897e^-11	2.103e^-6	INTRON CG30377
2L	1786155	2L_1786155_SNP [dm3] 2L_1786155_SNP [dm6]	A	T	7.309e^-11	2.193e^-6	DOWNSTREAM Gr22e INTERGENIC
3L	525159	3L_525159_SNP [dm3] 3L_525159_SNP [dm6]	G	T	7.478e^-11	2.208e^-6	INTRON klar
2L	1789815	2L_1789815_SNP [dm3] 2L_1789815_SNP [dm6]	C	T	8.102e^-11	2.331e^-6	NON_SYNONYMOUS_CODING Gr22d DOWNSTREAM Gr22c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1800193	2L_1800193_SNP [dm3] 2L_1800193_SNP [dm6]	T	A	8.144e^-11	2.331e^-6	INTERGENIC	TF binding site mE1_TFBS_inv
3L	11174708	3L_11174708_SNP [dm3] 3L_11181608_SNP [dm6]	G	T	9.014e^-11	2.541e^-6	INTRON GlcAT-P
3L	20699322	3L_20699322_SNP [dm3] 3L_20706222_SNP [dm6]	A	C	1.028e^-10	2.854e^-6	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	1800209	2L_1800209_SNP [dm3] 2L_1800209_SNP [dm6]	G	A	1.069e^-10	2.926e^-6	INTERGENIC	TF binding site mE1_TFBS_inv
3L	4009347	3L_4009347_SNP [dm3] 3L_4009347_SNP [dm6]	C	T	1.263e^-10	3.355e^-6	INTERGENIC
2R	12494877	2R_12494877_SNP [dm3] 2R_16607372_SNP [dm6]	T	C	1.280e^-10	3.355e^-6	UPSTREAM CG5065 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	12495000	2R_12495000_SNP [dm3] 2R_16607495_SNP [dm6]	A	G	1.280e^-10	3.355e^-6	UPSTREAM CG5065 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	12474587	3L_12474587_INS [dm3] 3L_12481487_INS [dm6]	C	CATCA	1.521e^-10	3.930e^-6	INTRON CG10663
3L	12479306	3L_12479306_SNP [dm3] 3L_12486206_SNP [dm6]	C	A	2.274e^-10	5.795e^-6	SYNONYMOUS_CODING CG33725 DOWNSTREAM CG10660	TF binding site BDTNP1_TFBS_twi
2R	11980063	2R_11980063_SNP [dm3] 2R_16092558_SNP [dm6]	G	A	2.384e^-10	5.995e^-6	INTRON Dg
3L	17541363	3L_17541363_SNP [dm3] 3L_17548263_SNP [dm6]	G	T	4.301e^-10	1.000e^-5	SYNONYMOUS_CODING Jon74E
3L	17541378	3L_17541378_SNP [dm3] 3L_17548278_SNP [dm6]	C	T	4.301e^-10	1.000e^-5	SYNONYMOUS_CODING Jon74E
3L	2805769	3L_2805769_SNP [dm3] 3L_2805769_SNP [dm6]	G	T	4.301e^-10	1.000e^-5	INTRON CG43444
3L	2805775	3L_2805775_DEL [dm3] 3L_2805775_DEL [dm6]	TGCATTTTTT	T	4.301e^-10	1.000e^-5	INTRON CG43444
3L	2813433	3L_2813433_SNP [dm3] 3L_2813433_SNP [dm6]	C	T	4.301e^-10	1.000e^-5	INTRON CG43444
X	3273509	X_3273509_SNP [dm3] X_3379476_SNP [dm6]	T	C	4.301e^-10	1.000e^-5	INTRON dm & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7812325	2L_7812325_DEL [dm3] 2L_7812325_DEL [dm6]	GATAGT	G	4.435e^-10	1.017e^-5	INTRON LanB1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12725988	2R_12725988_SNP [dm3] 2R_16838483_SNP [dm6]	G	A	4.484e^-10	1.017e^-5	EXON CR43650	TF binding site BDTNP1_TFBS_Med
3L	3052228	3L_3052228_SNP [dm3] 3L_3052228_SNP [dm6]	C	A	6.031e^-10	1.352e^-5	UPSTREAM CG1271 DOWNSTREAM CG32485 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10117509	3L_10117509_SNP [dm3] 3L_10124409_SNP [dm6]	C	T	6.450e^-10	1.352e^-5	INTRON dpr6	TF binding site mE1_TFBS_sens
3L	12041051	3L_12041051_SNP [dm3] 3L_12047951_SNP [dm6]	G	T	6.450e^-10	1.352e^-5	INTRON rols
3L	1095870	3L_1095870_SNP [dm3] 3L_1095870_SNP [dm6]	C	T	6.499e^-10	1.352e^-5	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18698025	X_18698025_SNP [dm3] X_18803992_SNP [dm6]	T	C	6.499e^-10	1.352e^-5	DOWNSTREAM CR44841 INTRON Pk17E	TF binding site BDTNP1_TFBS_twi
3L	11526925	3L_11526925_SNP [dm3] 3L_11533825_SNP [dm6]	G	A	6.530e^-10	1.352e^-5	INTRON Mob2	TF binding site BDTNP1_TFBS_dl
3L	11526941	3L_11526941_SNP [dm3] 3L_11533841_SNP [dm6]	C	T	6.530e^-10	1.352e^-5	INTRON Mob2	TF binding site BDTNP1_TFBS_dl
3L	11307999	3L_11307999_SNP [dm3] 3L_11314899_SNP [dm6]	G	C	6.541e^-10	1.352e^-5	UPSTREAM CR44361 INTERGENIC
X	13253737	X_13253737_SNP [dm3] X_13359704_SNP [dm6]	T	A	7.294e^-10	1.491e^-5	INTRON Syt12
2L	7836009	2L_7836009_SNP [dm3] 2L_7836009_SNP [dm6]	T	A	8.315e^-10	1.652e^-5	INTERGENIC
2L	14352406	2L_14352406_SNP [dm3] 2L_14352406_SNP [dm6]	A	T	8.712e^-10	1.652e^-5	NON_SYNONYMOUS_CODING CG43052 UPSTREAM l_2_34Fc DOWNSTREAM l_2_34Fd
2L	9121703	2L_9121703_SNP [dm3] 2L_9121703_SNP [dm6]	C	A	8.726e^-10	1.652e^-5	EXON CR44616	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	3793075	2R_3793075_SNP [dm3] 2R_7905570_SNP [dm6]	A	G	8.743e^-10	1.652e^-5	NON_SYNONYMOUS_CODING CG30377	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9675094	2L_9675094_SNP [dm3] 2L_9675094_SNP [dm6]	T	A	8.781e^-10	1.652e^-5	INTERGENIC
2L	9675096	2L_9675096_SNP [dm3] 2L_9675096_SNP [dm6]	C	T	8.781e^-10	1.652e^-5	INTERGENIC
3L	4511509	3L_4511509_SNP [dm3] 3L_4511509_SNP [dm6]	A	G	8.791e^-10	1.652e^-5	SYNONYMOUS_CODING Tie
X	16704138	X_16704138_SNP [dm3] X_16810105_SNP [dm6]	A	T	8.791e^-10	1.652e^-5	UPSTREAM CR44053 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3099420	2L_3099420_SNP [dm3] 2L_3099420_SNP [dm6]	G	A	9.281e^-10	1.711e^-5	INTRON toc
3L	12403841	3L_12403841_SNP [dm3] 3L_12410741_SNP [dm6]	G	T	9.290e^-10	1.711e^-5	INTRON CG32103
2L	18811184	2L_18811184_SNP [dm3] 2L_18811184_SNP [dm6]	C	A	9.878e^-10	1.802e^-5	START_GAINED CG10570 & 1 other UTR_5_PRIME CG10570 & 1 other UPSTREAM CG10570 & 1 other
3R	12997579	3R_12997579_SNP [dm3] 3R_17171857_SNP [dm6]	C	A	1.012e^-9	1.829e^-5	INTRON Mur89F
3L	10116559	3L_10116559_SNP [dm3] 3L_10123459_SNP [dm6]	C	T	1.053e^-9	1.883e^-5	INTRON dpr6
2L	9843117	2L_9843117_SNP [dm3] 2L_9843117_SNP [dm6]	C	T	1.169e^-9	2.050e^-5	INTRON nAChRalpha6
2L	9674954	2L_9674954_SNP [dm3] 2L_9674954_SNP [dm6]	G	C	1.186e^-9	2.050e^-5	INTERGENIC
2L	10478398	2L_10478398_SNP [dm3] 2L_10478398_SNP [dm6]	C	A	1.190e^-9	2.050e^-5	INTRON RluA-2
2L	10478405	2L_10478405_SNP [dm3] 2L_10478405_SNP [dm6]	G	A	1.190e^-9	2.050e^-5	INTRON RluA-2
2L	9121721	2L_9121721_SNP [dm3] 2L_9121721_SNP [dm6]	G	T	1.221e^-9	2.069e^-5	EXON CR44616	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12340263	3L_12340263_INS [dm3] 3L_12347163_INS [dm6]	A	ACACTAAA	1.223e^-9	2.069e^-5	INTRON CrzR
2L	1760187	2L_1760187_SNP [dm3] 2L_1760187_SNP [dm6]	A	T	1.338e^-9	2.243e^-5	INTERGENIC
3L	18889771	3L_18889771_SNP [dm3] 3L_18896671_SNP [dm6]	C	A	1.401e^-9	2.328e^-5	UPSTREAM snoRNA:Psi28S-2566 INTRON CG3902	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	14395467	2L_14395467_SNP [dm3] 2L_14395467_SNP [dm6]	C	G	1.442e^-9	2.374e^-5	INTRON elB
2L	5902815	2L_5902815_SNP [dm3] 2L_5902815_SNP [dm6]	C	T	1.625e^-9	2.653e^-5	DOWNSTREAM CG9021 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8812172	3L_8812172_SNP [dm3] 3L_8819072_SNP [dm6]	C	G	1.744e^-9	2.821e^-5	INTERGENIC
2L	9076892	2L_9076892_SNP [dm3] 2L_9076892_SNP [dm6]	C	A	1.835e^-9	2.942e^-5	UPSTREAM CG12439 INTERGENIC
3L	12337955	3L_12337955_SNP [dm3] 3L_12344855_SNP [dm6]	G	A	2.001e^-9	3.181e^-5	INTRON CrzR
3L	7010583	3L_7010583_SNP [dm3] 3L_7017483_SNP [dm6]	A	C	2.174e^-9	3.428e^-5	INTRON Mp
2L	6533909	2L_6533909_SNP [dm3] 2L_6533909_SNP [dm6]	T	C	2.932e^-9	4.584e^-5	INTRON eya	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21051482	2L_21051482_DEL [dm3] 2L_21051482_DEL [dm6]	CAAC	C	2.990e^-9	4.610e^-5	INTRON CG42238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad
2L	7321703	2L_7321703_SNP [dm3] 2L_7321703_SNP [dm6]	G	C	2.998e^-9	4.610e^-5	INTERGENIC	TF binding site mE1_TFBS_inv
2L	6695625	2L_6695625_SNP [dm3] 2L_6695625_SNP [dm6]	C	A	3.071e^-9	4.684e^-5	INTRON Tsp
2L	7298879	2L_7298879_DEL [dm3] 2L_7298879_DEL [dm6]	TT	T	3.300e^-9	4.902e^-5	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8296771	2L_8296771_SNP [dm3] 2L_8296771_SNP [dm6]	G	A	3.346e^-9	4.902e^-5	UTR_5_PRIME Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2L	8296794	2L_8296794_SNP [dm3] 2L_8296794_SNP [dm6]	A	T	3.346e^-9	4.902e^-5	UTR_5_PRIME Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2L	8296808	2L_8296808_SNP [dm3] 2L_8296808_SNP [dm6]	T	G	3.346e^-9	4.902e^-5	UTR_5_PRIME Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2L	8296820	2L_8296820_SNP [dm3] 2L_8296820_SNP [dm6]	G	T	3.346e^-9	4.902e^-5	UTR_5_PRIME Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3L	12480330	3L_12480330_SNP [dm3] 3L_12487230_SNP [dm6]	T	C	3.729e^-9	5.421e^-5	NON_SYNONYMOUS_CODING CG10660 DOWNSTREAM CG33725	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14089693	X_14089693_SNP [dm3] X_14195660_SNP [dm6]	C	T	4.255e^-9	6.136e^-5	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	9263618	3R_9263618_SNP [dm3] 3R_13437896_SNP [dm6]	G	A	4.532e^-9	6.486e^-5	DOWNSTREAM CR42756 INTERGENIC
2L	3887069	2L_3887069_SNP [dm3] 2L_3887069_SNP [dm6]	T	G	4.660e^-9	6.618e^-5	SYNONYMOUS_CODING capu INTRON capu
2L	8477047	2L_8477047_DEL [dm3] 2L_8477047_DEL [dm6]	TTAG	T	4.739e^-9	6.679e^-5	UPSTREAM CheA29a INTRON d
2L	589526	2L_589526_SNP [dm3] 2L_589526_SNP [dm6]	G	T	5.957e^-9	8.333e^-5	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	12386002	2R_12386002_SNP [dm3] 2R_16498497_SNP [dm6]	C	T	6.086e^-9	8.450e^-5	SYNONYMOUS_CODING CG7813
2L	20681503	2L_20681503_DEL [dm3] 2L_20681503_DEL [dm6]	GACCTTTC	G	6.381e^-9	8.794e^-5	UTR_5_PRIME Cen UPSTREAM CG2617
2R	15096390	2R_15096390_INS [dm3] 2R_19208885_INS [dm6]	A	AAAT	6.617e^-9	8.986e^-5	INTRON hppy
2R	15096393	2R_15096393_INS [dm3] 2R_19208888_INS [dm6]	T	TGATGTTAAAGCTGTAAAAA...	6.617e^-9	8.986e^-5	INTRON hppy
2L	4249850	2L_4249850_SNP [dm3] 2L_4249850_SNP [dm6]	C	T	6.898e^-9	9.300e^-5	UPSTREAM CR44059 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15980030	2L_15980030_SNP [dm3] 2L_15980030_SNP [dm6]	C	T	7.121e^-9	9.532e^-5	SYNONYMOUS_CODING CG10839
2L	8179510	2L_8179510_SNP [dm3] 2L_8179510_SNP [dm6]	T	C	7.442e^-9	9.890e^-5	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_cad
2L	22679196	2L_22679196_INS [dm3] 2L_22786464_INS [dm6]	A	TTT	8.966e^-9	1.183e^-4	INTERGENIC
3L	12216173	3L_12216173_SNP [dm3] 3L_12223073_SNP [dm6]	T	C	9.284e^-9	1.216e^-4	INTRON app
2L	6936657	2L_6936657_SNP [dm3] 2L_6936657_SNP [dm6]	A	T	1.046e^-8	1.361e^-4	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad
X	8392633	X_8392633_SNP [dm3] X_8498600_SNP [dm6]	G	A	1.055e^-8	1.363e^-4	INTRON CG33181
3L	4008234	3L_4008234_SNP [dm3] 3L_4008234_SNP [dm6]	G	A	1.071e^-8	1.374e^-4	INTERGENIC
2L	19284978	2L_19284978_SNP [dm3] 2L_19284978_SNP [dm6]	G	C	1.155e^-8	1.472e^-4	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	1817169	2L_1817169_SNP [dm3] 2L_1817169_SNP [dm6]	A	T	1.175e^-8	1.487e^-4	INTERGENIC
3R	26887274	3R_26887274_SNP [dm3] 3R_31061552_SNP [dm6]	C	A	1.233e^-8	1.550e^-4	UPSTREAM dco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
3L	525139	3L_525139_SNP [dm3] 3L_525139_SNP [dm6]	C	A	1.288e^-8	1.587e^-4	INTRON klar
3L	525177	3L_525177_INS [dm3] 3L_525177_INS [dm6]	A	AT	1.288e^-8	1.587e^-4	INTRON klar
3L	525182	3L_525182_SNP [dm3] 3L_525182_SNP [dm6]	G	A	1.288e^-8	1.587e^-4	INTRON klar
X	1447708	X_1447708_SNP [dm3] X_1553675_SNP [dm6]	G	A	1.335e^-8	1.634e^-4	NON_SYNONYMOUS_CODING Mur2B INTRON Mur2B	TF binding site mE1_TFBS_chinmo
3R	1104842	3R_1104842_SNP [dm3] 3R_5279120_SNP [dm6]	G	A	1.420e^-8	1.692e^-4	INTRON mtd
3R	10288570	3R_10288570_INS [dm3] 3R_14462848_INS [dm6]	A	AA	1.440e^-8	1.692e^-4	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1400787	X_1400787_SNP [dm3] X_1506754_SNP [dm6]	G	T	1.464e^-8	1.692e^-4	INTRON inc & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	1406028	X_1406028_SNP [dm3] X_1511995_SNP [dm6]	G	T	1.464e^-8	1.692e^-4	DOWNSTREAM CG14795 INTRON inc	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	1407782	X_1407782_SNP [dm3] X_1513749_SNP [dm6]	C	T	1.464e^-8	1.692e^-4	UPSTREAM CG14795 INTRON inc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	1411732	X_1411732_SNP [dm3] X_1517699_SNP [dm6]	T	A	1.464e^-8	1.692e^-4	DOWNSTREAM inc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1419843	X_1419843_SNP [dm3] X_1525810_SNP [dm6]	A	G	1.464e^-8	1.692e^-4	INTRON Mur2B
X	1420344	X_1420344_SNP [dm3] X_1526311_SNP [dm6]	G	A	1.464e^-8	1.692e^-4	INTRON Mur2B
X	1420461	X_1420461_SNP [dm3] X_1526428_SNP [dm6]	T	G	1.464e^-8	1.692e^-4	INTRON Mur2B
3L	11063307	3L_11063307_SNP [dm3] 3L_11070207_SNP [dm6]	T	G	1.485e^-8	1.696e^-4	UPSTREAM Mocs1 & 1 other INTERGENIC
2L	6936663	2L_6936663_SNP [dm3] 2L_6936663_SNP [dm6]	T	A	1.485e^-8	1.696e^-4	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad
2L	8474238	2L_8474238_INS [dm3] 2L_8474238_INS [dm6]	A	ACATA	1.593e^-8	1.807e^-4	INTRON d
2L	1787392	2L_1787392_SNP [dm3] 2L_1787392_SNP [dm6]	G	A	1.883e^-8	2.123e^-4	INTERGENIC
X	1418456	X_1418456_SNP [dm3] X_1524423_SNP [dm6]	G	A	1.913e^-8	2.131e^-4	INTRON Mur2B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	1419494	X_1419494_SNP [dm3] X_1525461_SNP [dm6]	C	A	1.913e^-8	2.131e^-4	INTRON Mur2B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	1455475	X_1455475_INS [dm3] X_1561442_INS [dm6]	T	TGTATATATAT...	1.941e^-8	2.137e^-4	INTRON Mur2B
X	1455504	X_1455504_SNP [dm3] X_1561471_SNP [dm6]	A	C	1.941e^-8	2.137e^-4	INTRON Mur2B
X	1420974	X_1420974_SNP [dm3] X_1526941_SNP [dm6]	A	G	1.966e^-8	2.151e^-4	INTRON Mur2B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	1400779	X_1400779_INS [dm3] X_1506746_INS [dm6]	T	TGT	2.105e^-8	2.291e^-4	INTRON inc & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	6413374	2L_6413374_SNP [dm3] 2L_6413374_SNP [dm6]	A	T	2.200e^-8	2.341e^-4	SPLICE_SITE_REGION CG13982 INTRON CG13982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2186928	2L_2186928_SNP [dm3] 2L_2186928_SNP [dm6]	A	T	2.214e^-8	2.341e^-4	UPSTREAM tRNA:CR31946 DOWNSTREAM CR44066 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25808997	3R_25808997_SNP [dm3] 3R_29983275_SNP [dm6]	T	C	2.214e^-8	2.341e^-4	UPSTREAM CG7896 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	26116818	3R_26116818_SNP [dm3] 3R_30291096_SNP [dm6]	T	A	2.214e^-8	2.341e^-4	INTRON hdc
3R	26116820	3R_26116820_SNP [dm3] 3R_30291098_SNP [dm6]	T	A	2.214e^-8	2.341e^-4	INTRON hdc
X	1466219	X_1466219_INS [dm3] X_1572186_INS [dm6]	T	TT	2.251e^-8	2.366e^-4	INTRON Mur2B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	4016638	3L_4016638_SNP [dm3] 3L_4016638_SNP [dm6]	T	C	2.333e^-8	2.438e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	12337007	3L_12337007_SNP [dm3] 3L_12343907_SNP [dm6]	T	C	2.349e^-8	2.441e^-4	INTRON CrzR
2R	12861119	2R_12861119_SNP [dm3] 2R_16973614_SNP [dm6]	C	G	2.432e^-8	2.514e^-4	UPSTREAM Cbp53E INTERGENIC
2L	2186931	2L_2186931_INS [dm3] 2L_2186931_INS [dm6]	GG	TTTTA	2.610e^-8	2.664e^-4	UPSTREAM tRNA:CR31946 DOWNSTREAM CR44066 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	8523632	2R_8523632_SNP [dm3] 2R_12636127_SNP [dm6]	G	A	2.663e^-8	2.664e^-4	UTR_5_PRIME CG33671 & 1 other UPSTREAM Iswi & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8523655	2R_8523655_SNP [dm3] 2R_12636150_SNP [dm6]	A	G	2.663e^-8	2.664e^-4	UPSTREAM Iswi & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8523676	2R_8523676_SNP [dm3] 2R_12636171_SNP [dm6]	A	G	2.663e^-8	2.664e^-4	UPSTREAM Iswi & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8523723	2R_8523723_SNP [dm3] 2R_12636218_SNP [dm6]	G	T	2.663e^-8	2.664e^-4	UPSTREAM Iswi & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8523757	2R_8523757_SNP [dm3] 2R_12636252_SNP [dm6]	T	C	2.663e^-8	2.664e^-4	UPSTREAM Iswi & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
X	16942025	X_16942025_SNP [dm3] X_17047992_SNP [dm6]	A	G	2.716e^-8	2.702e^-4	INTRON CG45002
3R	6966723	3R_6966723_SNP [dm3] 3R_11141001_SNP [dm6]	T	C	2.770e^-8	2.741e^-4	INTERGENIC
2L	8131094	2L_8131094_SNP [dm3] 2L_8131094_SNP [dm6]	T	A	2.881e^-8	2.836e^-4	INTRON CG8668
3L	12411499	3L_12411499_SNP [dm3] 3L_12418399_SNP [dm6]	C	G	3.219e^-8	3.152e^-4	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
X	1438036	X_1438036_SNP [dm3] X_1544003_SNP [dm6]	G	T	3.238e^-8	3.154e^-4	INTRON Mur2B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13691200	2L_13691200_SNP [dm3] 2L_13691200_SNP [dm6]	T	G	3.322e^-8	3.219e^-4	INTRON CG31814
2L	8131089	2L_8131089_SNP [dm3] 2L_8131089_SNP [dm6]	A	C	3.656e^-8	3.506e^-4	INTRON CG8668
3L	12451867	3L_12451867_SNP [dm3] 3L_12458767_SNP [dm6]	G	C	3.656e^-8	3.506e^-4	INTERGENIC
X	21908298	X_21908298_SNP [dm3] X_22506462_SNP [dm6]	T	A	3.798e^-8	3.585e^-4	INTRON l_1_G0196	transposable element FlyBase
X	18861121	X_18861121_SNP [dm3] X_18967088_SNP [dm6]	G	T	3.801e^-8	3.585e^-4	INTRON CG43759	TF binding site mE1_TFBS_inv
3R	26887971	3R_26887971_INS [dm3] 3R_31062249_INS [dm6]	A	ATG	3.815e^-8	3.585e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	26888016	3R_26888016_SNP [dm3] 3R_31062294_SNP [dm6]	A	G	3.815e^-8	3.585e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	8131137	2L_8131137_SNP [dm3] 2L_8131137_SNP [dm6]	G	T	3.871e^-8	3.615e^-4	INTRON CG8668
2R	17942809	2R_17942809_SNP [dm3] 2R_22055304_SNP [dm6]	C	A	3.886e^-8	3.615e^-4	INTERGENIC
2R	4588861	2R_4588861_SNP [dm3] 2R_8701356_SNP [dm6]	G	A	4.158e^-8	3.849e^-4	SYNONYMOUS_CODING CG8584 UPSTREAM CG12376	TF binding site BDTNP1_TFBS_sna
3L	20337892	3L_20337892_INS [dm3] 3L_20344792_INS [dm6]	T	CACAC	4.279e^-8	3.941e^-4	UPSTREAM CR45385 DOWNSTREAM Spn77Bc & 1 other INTERGENIC
3L	12392558	3L_12392558_SNP [dm3] 3L_12399458_SNP [dm6]	A	T	4.303e^-8	3.943e^-4	UPSTREAM CG32104 DOWNSTREAM Smyd4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16153386	2R_16153386_SNP [dm3] 2R_20265881_SNP [dm6]	C	T	4.439e^-8	4.048e^-4	SYNONYMOUS_CODING CG8908 UPSTREAM CR43812	TF binding site mE1_TFBS_cad
3L	8522263	3L_8522263_SNP [dm3] 3L_8529163_SNP [dm6]	T	C	4.574e^-8	4.151e^-4	INTRON foi
X	7572040	X_7572040_DEL [dm3] X_7678007_DEL [dm6]	ACAAGAA	A	4.908e^-8	4.433e^-4	UTR_3_PRIME ct
2L	17119776	2L_17119776_DEL [dm3] 2L_17119776_DEL [dm6]	TAACT	T	4.954e^-8	4.452e^-4	INTERGENIC
2R	4589005	2R_4589005_SNP [dm3] 2R_8701500_SNP [dm6]	C	G	5.453e^-8	4.877e^-4	NON_SYNONYMOUS_CODING CG8584 UPSTREAM CG12376
2L	3721145	2L_3721145_SNP [dm3] 2L_3721145_SNP [dm6]	A	C	5.924e^-8	5.273e^-4	UPSTREAM Shaw INTRON Shaw
3R	7912250	3R_7912250_SNP [dm3] 3R_12086528_SNP [dm6]	T	G	5.982e^-8	5.283e^-4	INTRON CG14741	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8728353	3L_8728353_SNP [dm3] 3L_8735253_SNP [dm6]	T	C	5.992e^-8	5.283e^-4	INTRON Prm
2L	1782411	2L_1782411_SNP [dm3] 2L_1782411_SNP [dm6]	A	G	6.033e^-8	5.295e^-4	INTERGENIC	regulatory region REDfly_CRMs
3R	26874384	3R_26874384_DEL [dm3] 3R_31048662_DEL [dm6]	CCGT	AG	6.532e^-8	5.517e^-4	UPSTREAM Aph-4 INTERGENIC
3R	26874438	3R_26874438_SNP [dm3] 3R_31048716_SNP [dm6]	A	C	6.532e^-8	5.517e^-4	UPSTREAM Aph-4 INTERGENIC
3R	9579629	3R_9579629_SNP [dm3] 3R_13753907_SNP [dm6]	A	G	6.540e^-8	5.517e^-4	SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12392357	3L_12392357_SNP [dm3] 3L_12399257_SNP [dm6]	T	C	6.553e^-8	5.517e^-4	NON_SYNONYMOUS_CODING CG32104 DOWNSTREAM Smyd4	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12392378	3L_12392378_SNP [dm3] 3L_12399278_SNP [dm6]	A	G	6.553e^-8	5.517e^-4	UTR_5_PRIME CG32104 DOWNSTREAM Smyd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12399013	3L_12399013_SNP [dm3] 3L_12405913_SNP [dm6]	G	A	6.553e^-8	5.517e^-4	UPSTREAM CG32103 INTRON CG32103
3L	12399018	3L_12399018_SNP [dm3] 3L_12405918_SNP [dm6]	G	A	6.553e^-8	5.517e^-4	UPSTREAM CG32103 INTRON CG32103
3L	12399039	3L_12399039_SNP [dm3] 3L_12405939_SNP [dm6]	T	G	6.553e^-8	5.517e^-4	UPSTREAM CG32103 INTRON CG32103
3L	12401413	3L_12401413_SNP [dm3] 3L_12408313_SNP [dm6]	G	A	6.553e^-8	5.517e^-4	UTR_5_PRIME CG32103 INTRON CG32103	TF binding site mE1_TFBS_cad
3L	1660007	3L_1660007_SNP [dm3] 3L_1660007_SNP [dm6]	G	A	6.832e^-8	5.725e^-4	DOWNSTREAM CG7971 INTRON CG7971
2L	15970473	2L_15970473_SNP [dm3] 2L_15970473_SNP [dm6]	T	A	6.952e^-8	5.800e^-4	INTERGENIC
2L	17906647	2L_17906647_DEL [dm3] 2L_17906647_DEL [dm6]	TATTT	T	7.132e^-8	5.923e^-4	INTERGENIC
2L	2094324	2L_2094324_SNP [dm3] 2L_2094324_SNP [dm6]	G	A	7.454e^-8	5.988e^-4	INTRON dpr3	TF binding site BDTNP1_TFBS_twi
3L	15505073	3L_15505073_SNP [dm3] 3L_15511973_SNP [dm6]	A	T	7.454e^-8	5.988e^-4	UTR_5_PRIME Eip71CD DOWNSTREAM gdl INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	15435890	3R_15435890_SNP [dm3] 3R_19610168_SNP [dm6]	C	T	7.454e^-8	5.988e^-4	UPSTREAM CG17752 DOWNSTREAM CG17751 INTERGENIC
3R	26481350	3R_26481350_SNP [dm3] 3R_30655628_SNP [dm6]	A	T	7.454e^-8	5.988e^-4	INTERGENIC
3R	26881767	3R_26881767_SNP [dm3] 3R_31056045_SNP [dm6]	T	C	7.454e^-8	5.988e^-4	UTR_3_PRIME dco
3R	10911728	3R_10911728_SNP [dm3] 3R_15086006_SNP [dm6]	C	A	7.465e^-8	5.988e^-4	INTRON CG6966
3R	10911990	3R_10911990_SNP [dm3] 3R_15086268_SNP [dm6]	A	T	7.465e^-8	5.988e^-4	INTRON CG6966
3L	6913954	3L_6913954_SNP [dm3] 3L_6920854_SNP [dm6]	A	T	7.467e^-8	5.988e^-4	INTERGENIC
2L	1786987	2L_1786987_SNP [dm3] 2L_1786987_SNP [dm6]	G	A	7.565e^-8	6.041e^-4	INTERGENIC
3L	12338224	3L_12338224_SNP [dm3] 3L_12345124_SNP [dm6]	T	A	7.837e^-8	6.231e^-4	INTRON CrzR
3L	12336338	3L_12336338_SNP [dm3] 3L_12343238_SNP [dm6]	A	T	7.964e^-8	6.305e^-4	INTRON CrzR
3L	10288246	3L_10288246_SNP [dm3] 3L_10295146_SNP [dm6]	T	A	8.007e^-8	6.312e^-4	INTERGENIC
X	19994945	X_19994945_SNP [dm3] X_20100912_SNP [dm6]	G	A	8.242e^-8	6.470e^-4	INTERGENIC	transposable element FlyBase
3L	7690468	3L_7690468_SNP [dm3] 3L_7697368_SNP [dm6]	T	A	8.383e^-8	6.526e^-4	NON_SYNONYMOUS_CODING Ank2 INTRON CG32373	TF binding site mE1_TFBS_sens
3R	24431506	3R_24431506_SNP [dm3] 3R_28605784_SNP [dm6]	A	G	8.383e^-8	6.526e^-4	UPSTREAM CG9986 DOWNSTREAM Hrb98DE INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16344969	2R_16344969_SNP [dm3] 2R_20457464_SNP [dm6]	A	T	8.716e^-8	6.685e^-4	INTRON CG12484	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9529967	2R_9529967_SNP [dm3] 2R_13642462_SNP [dm6]	G	T	8.716e^-8	6.685e^-4	INTRON fas
3R	26875063	3R_26875063_SNP [dm3] 3R_31049341_SNP [dm6]	C	T	8.732e^-8	6.685e^-4	UPSTREAM Aph-4 INTRON Aph-4
3R	26875088	3R_26875088_SNP [dm3] 3R_31049366_SNP [dm6]	C	A	8.732e^-8	6.685e^-4	UPSTREAM Aph-4 INTRON Aph-4
2L	4253943	2L_4253943_SNP [dm3] 2L_4253943_SNP [dm6]	G	A	9.021e^-8	6.878e^-4	INTERGENIC
2L	8653216	2L_8653216_SNP [dm3] 2L_8653216_SNP [dm6]	C	A	9.259e^-8	7.031e^-4	INTRON Sema-1a
3R	25794817	3R_25794817_SNP [dm3] 3R_29969095_SNP [dm6]	G	T	9.340e^-8	7.060e^-4	UTR_5_PRIME TkR99D
3R	8682825	3R_8682825_DEL [dm3] 3R_12857103_DEL [dm6]	AA	T	9.380e^-8	7.060e^-4	INTRON CG10126
3L	12474258	3L_12474258_INS [dm3] 3L_12481158_INS [dm6]	A	AGTCAGATACTTGGATAATC...	9.678e^-8	7.060e^-4	INTRON CG10663
3R	26879155	3R_26879155_SNP [dm3] 3R_31053433_SNP [dm6]	G	A	9.791e^-8	7.060e^-4	DOWNSTREAM Aph-4 & 1 other INTRON l_3_03670	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	26880388	3R_26880388_SNP [dm3] 3R_31054666_SNP [dm6]	A	G	9.791e^-8	7.060e^-4	UTR_3_PRIME dco UPSTREAM l_3_03670 DOWNSTREAM dco	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26880744	3R_26880744_SNP [dm3] 3R_31055022_SNP [dm6]	C	T	9.791e^-8	7.060e^-4	UTR_3_PRIME dco DOWNSTREAM dco
3R	26882749	3R_26882749_SNP [dm3] 3R_31057027_SNP [dm6]	G	A	9.791e^-8	7.060e^-4	SYNONYMOUS_CODING dco
3R	26882965	3R_26882965_SNP [dm3] 3R_31057243_SNP [dm6]	T	A	9.791e^-8	7.060e^-4	SYNONYMOUS_CODING dco	TF binding site mE1_TFBS_HSA
3R	26882983	3R_26882983_SNP [dm3] 3R_31057261_SNP [dm6]	C	T	9.791e^-8	7.060e^-4	SYNONYMOUS_CODING dco	TF binding site mE1_TFBS_HSA
3R	26883181	3R_26883181_SNP [dm3] 3R_31057459_SNP [dm6]	C	T	9.791e^-8	7.060e^-4	SYNONYMOUS_CODING dco	TF binding site mE1_TFBS_HSA
3R	26883989	3R_26883989_SNP [dm3] 3R_31058267_SNP [dm6]	G	A	9.791e^-8	7.060e^-4	INTRON dco	TF binding site mE1_TFBS_Trl
3R	26884068	3R_26884068_SNP [dm3] 3R_31058346_SNP [dm6]	C	T	9.791e^-8	7.060e^-4	INTRON dco	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26884201	3R_26884201_SNP [dm3] 3R_31058479_SNP [dm6]	C	G	9.791e^-8	7.060e^-4	INTRON dco	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	2381291	3L_2381291_SNP [dm3] 3L_2381291_SNP [dm6]	G	T	9.969e^-8	7.161e^-4	INTRON CG45186
2L	5419171	2L_5419171_SNP [dm3] 2L_5419171_SNP [dm6]	A	G	1.044e^-7	7.471e^-4	INTERGENIC
2L	1761744	2L_1761744_SNP [dm3] 2L_1761744_SNP [dm6]	C	A	1.055e^-7	7.520e^-4	INTERGENIC
2L	968235	2L_968235_SNP [dm3] 2L_968235_SNP [dm6]	G	A	1.091e^-7	7.751e^-4	INTERGENIC
3R	26874912	3R_26874912_SNP [dm3] 3R_31049190_SNP [dm6]	C	T	1.161e^-7	8.215e^-4	SYNONYMOUS_CODING Aph-4 UPSTREAM Aph-4
3R	4619967	3R_4619967_SNP [dm3] 3R_8794245_SNP [dm6]	C	G	1.177e^-7	8.293e^-4	UPSTREAM Ir85a INTRON Pif1A & 1 other
2L	19281873	2L_19281873_SNP [dm3] 2L_19281873_SNP [dm6]	G	T	1.198e^-7	8.408e^-4	INTERGENIC
2L	4254067	2L_4254067_SNP [dm3] 2L_4254067_SNP [dm6]	C	A	1.211e^-7	8.438e^-4	INTERGENIC
3R	9691301	3R_9691301_SNP [dm3] 3R_13865579_SNP [dm6]	C	T	1.211e^-7	8.438e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	1759967	2L_1759967_SNP [dm3] 2L_1759967_SNP [dm6]	C	T	1.237e^-7	8.529e^-4	UPSTREAM CG17650 INTERGENIC
2L	1760048	2L_1760048_SNP [dm3] 2L_1760048_SNP [dm6]	C	A	1.237e^-7	8.529e^-4	UPSTREAM CG17650 INTERGENIC
3R	26873761	3R_26873761_SNP [dm3] 3R_31048039_SNP [dm6]	C	T	1.238e^-7	8.529e^-4	UPSTREAM Aph-4 INTERGENIC
2L	1787623	2L_1787623_SNP [dm3] 2L_1787623_SNP [dm6]	A	C	1.251e^-7	8.591e^-4	INTERGENIC
3L	4665397	3L_4665397_SNP [dm3] 3L_4665397_SNP [dm6]	G	T	1.278e^-7	8.740e^-4	DOWNSTREAM CG32236 INTRON axo
3R	26871477	3R_26871477_SNP [dm3] 3R_31045755_SNP [dm6]	A	G	1.290e^-7	8.789e^-4	UPSTREAM CG33920 INTRON CanA1	transposable element FlyBase
3L	15628019	3L_15628019_SNP [dm3] 3L_15634919_SNP [dm6]	G	A	1.314e^-7	8.843e^-4	UPSTREAM comm3 INTRON comm3
2R	14705614	2R_14705614_SNP [dm3] 2R_18818109_SNP [dm6]	C	A	1.314e^-7	8.843e^-4	INTERGENIC
2R	14705615	2R_14705615_SNP [dm3] 2R_18818110_SNP [dm6]	A	T	1.314e^-7	8.843e^-4	INTERGENIC
2R	17423382	2R_17423382_SNP [dm3] 2R_21535877_SNP [dm6]	G	A	1.317e^-7	8.843e^-4	SYNONYMOUS_CODING CG30286 UTR_3_PRIME CG30286 INTRON Egfr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	22073054	3R_22073054_SNP [dm3] 3R_26247332_SNP [dm6]	C	T	1.327e^-7	8.880e^-4	INTRON CR42745	TF binding site mE1_TFBS_bab1
2L	8392783	2L_8392783_SNP [dm3] 2L_8392783_SNP [dm6]	G	A	1.339e^-7	8.927e^-4	SYNONYMOUS_CODING Acp29AB UPSTREAM CG42820 DOWNSTREAM lectin-29Ca	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10289050	3L_10289050_SNP [dm3] 3L_10295950_SNP [dm6]	A	G	1.345e^-7	8.938e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
3L	7957883	3L_7957883_DEL [dm3] 3L_7964783_DEL [dm6]	AA	A	1.355e^-7	8.974e^-4	INTERGENIC
2L	4265165	2L_4265165_SNP [dm3] 2L_4265165_SNP [dm6]	G	T	1.409e^-7	9.293e^-4	INTERGENIC
2L	11373312	2L_11373312_SNP [dm3] 2L_11373312_SNP [dm6]	T	C	1.494e^-7	9.728e^-4	UTR_3_PRIME salr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	10914142	3R_10914142_SNP [dm3] 3R_15088420_SNP [dm6]	C	T	1.498e^-7	9.728e^-4	INTRON CG6966
3R	22061023	3R_22061023_SNP [dm3] 3R_26235301_SNP [dm6]	T	A	1.498e^-7	9.728e^-4	UPSTREAM CR42745 DOWNSTREAM CG12290 INTERGENIC
2R	17326783	2R_17326783_SNP [dm3] 2R_21439278_SNP [dm6]	C	A	1.501e^-7	9.728e^-4	INTRON Sdc
X	1407024	X_1407024_SNP [dm3] X_1512991_SNP [dm6]	G	A	1.512e^-7	9.728e^-4	UTR_5_PRIME inc UPSTREAM inc & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
X	1418076	X_1418076_SNP [dm3] X_1524043_SNP [dm6]	C	A	1.512e^-7	9.728e^-4	UTR_3_PRIME Mur2B	TF binding site mE1_TFBS_chinmo
3L	20292501	3L_20292501_DEL [dm3] 3L_20299401_DEL [dm6]	TTAAACAATA	T	1.515e^-7	9.728e^-4	UTR_5_PRIME CG6597 UPSTREAM CR43872 & 1 other INTRON Pex23 INTRAGENIC CG6597 EXON CR43872
2L	9675130	2L_9675130_SNP [dm3] 2L_9675130_SNP [dm6]	A	G	1.554e^-7	9.728e^-4	INTERGENIC
2L	14402210	2L_14402210_SNP [dm3] 2L_14402210_SNP [dm6]	G	A	1.563e^-7	9.728e^-4	INTRON elB
2L	14405011	2L_14405011_SNP [dm3] 2L_14405011_SNP [dm6]	T	G	1.563e^-7	9.728e^-4	INTRON elB	TF binding site mE1_TFBS_cad
2L	14405090	2L_14405090_SNP [dm3] 2L_14405090_SNP [dm6]	T	C	1.563e^-7	9.728e^-4	INTRON elB	TF binding site mE1_TFBS_cad
2L	11328201	2L_11328201_SNP [dm3] 2L_11328201_SNP [dm6]	C	A	1.573e^-7	9.728e^-4	INTERGENIC
2L	11328204	2L_11328204_SNP [dm3] 2L_11328204_SNP [dm6]	T	A	1.573e^-7	9.728e^-4	INTERGENIC
2L	11374277	2L_11374277_SNP [dm3] 2L_11374277_SNP [dm6]	G	A	1.573e^-7	9.728e^-4	DOWNSTREAM salr INTERGENIC
3L	15637477	3L_15637477_SNP [dm3] 3L_15644377_SNP [dm6]	G	T	1.573e^-7	9.728e^-4	INTRON comm3
3L	8722499	3L_8722499_SNP [dm3] 3L_8729399_SNP [dm6]	T	A	1.573e^-7	9.728e^-4	UPSTREAM Cp19 DOWNSTREAM Cp15 INTERGENIC
3R	19623888	3R_19623888_SNP [dm3] 3R_23798166_SNP [dm6]	G	A	1.573e^-7	9.728e^-4	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25803799	3R_25803799_SNP [dm3] 3R_29978077_SNP [dm6]	C	T	1.573e^-7	9.728e^-4	INTERGENIC
X	13253736	X_13253736_SNP [dm3] X_13359703_SNP [dm6]	A	G	1.574e^-7	9.728e^-4	INTRON Syt12
2L	5702636	2L_5702636_SNP [dm3] 2L_5702636_SNP [dm6]	T	C	1.614e^-7	9.903e^-4	INTERGENIC
2L	1760194	2L_1760194_SNP [dm3] 2L_1760194_SNP [dm6]	G	A	1.618e^-7	9.903e^-4	INTERGENIC
2L	1760302	2L_1760302_SNP [dm3] 2L_1760302_SNP [dm6]	G	T	1.618e^-7	9.903e^-4	INTERGENIC
2L	8296975	2L_8296975_INS [dm3] 2L_8296975_INS [dm6]	A	AG	1.651e^-7	0.001	UTR_5_PRIME Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8393125	2L_8393125_SNP [dm3] 2L_8393125_SNP [dm6]	C	G	1.664e^-7	0.001	NON_SYNONYMOUS_CODING Acp29AB UPSTREAM CG42820 DOWNSTREAM lectin-29Ca
3R	6966699	3R_6966699_SNP [dm3] 3R_11140977_SNP [dm6]	A	T	1.680e^-7	0.001	INTERGENIC
2R	14705610	2R_14705610_MNP [dm3] 2R_18818105_MNP [dm6]	TAG	ATT	1.747e^-7	0.001	INTERGENIC
3L	16573145	3L_16573145_DEL [dm3] 3L_16580045_DEL [dm6]	TCTTT	T	1.769e^-7	0.001	UPSTREAM nxf2 DOWNSTREAM Smn INTRON nxf2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	21999673	3L_21999673_SNP [dm3] 3L_22006573_SNP [dm6]	T	C	1.783e^-7	0.001	INTERGENIC
2R	20259618	2R_20259618_SNP [dm3] 2R_24372095_SNP [dm6]	G	A	1.787e^-7	0.001	INTRON bs
3R	10592984	3R_10592984_SNP [dm3] 3R_14767262_SNP [dm6]	A	T	1.802e^-7	0.001	INTRON jvl
2L	15984725	2L_15984725_INS [dm3] 2L_15984725_INS [dm6]	C	AGA	1.815e^-7	0.001	INTERGENIC
3R	22072970	3R_22072970_SNP [dm3] 3R_26247248_SNP [dm6]	G	C	1.907e^-7	0.001	INTRON CR42745
3R	8515127	3R_8515127_SNP [dm3] 3R_12689405_SNP [dm6]	G	A	1.952e^-7	0.001	UPSTREAM kar DOWNSTREAM Su_fu_ INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	14395980	2L_14395980_SNP [dm3] 2L_14395980_SNP [dm6]	A	T	1.966e^-7	0.001	INTRON elB
2L	14396746	2L_14396746_SNP [dm3] 2L_14396746_SNP [dm6]	T	C	1.966e^-7	0.001	INTRON elB
3L	16322124	3L_16322124_SNP [dm3] 3L_16329024_SNP [dm6]	C	T	1.968e^-7	0.001	SYNONYMOUS_CODING CG13058 UPSTREAM CG33061
3L	1754220	3L_1754220_SNP [dm3] 3L_1754220_SNP [dm6]	C	T	1.977e^-7	0.001	INTRON Cht2
2L	14405626	2L_14405626_SNP [dm3] 2L_14405626_SNP [dm6]	T	A	1.987e^-7	0.001	INTRON elB	TF binding site mE1_TFBS_cad
2L	14399917	2L_14399917_SNP [dm3] 2L_14399917_SNP [dm6]	A	C	1.994e^-7	0.001	INTRON elB
2L	16840920	2L_16840920_INS [dm3] 2L_16840920_INS [dm6]	A	AG	2.040e^-7	0.001	INTRON SclA & 1 other
3R	13941759	3R_13941759_SNP [dm3] 3R_18116037_SNP [dm6]	C	A	2.121e^-7	0.001	INTRON sr
3R	26892401	3R_26892401_SNP [dm3] 3R_31066679_SNP [dm6]	T	A	2.124e^-7	0.001	INTRON Sox100B	TF binding site mE1_TFBS_HSA
2R	7264892	2R_7264892_SNP [dm3] 2R_11377387_SNP [dm6]	C	T	2.130e^-7	0.001	UTR_3_PRIME Tsp47F DOWNSTREAM CG13203
2L	14402212	2L_14402212_SNP [dm3] 2L_14402212_SNP [dm6]	G	T	2.151e^-7	0.001	INTRON elB
3L	17333429	3L_17333429_SNP [dm3] 3L_17340329_SNP [dm6]	G	A	2.196e^-7	0.001	NON_SYNONYMOUS_CODING CG13727 UPSTREAM tRNA:CR32173	TF binding site mE1_TFBS_cad
2R	14705596	2R_14705596_SNP [dm3] 2R_18818091_SNP [dm6]	A	C	2.260e^-7	0.001	INTERGENIC
2R	14705598	2R_14705598_DEL [dm3] 2R_18818093_DEL [dm6]	TA	T	2.260e^-7	0.001	INTERGENIC
2R	14705604	2R_14705604_DEL [dm3] 2R_18818099_DEL [dm6]	GTG	A	2.260e^-7	0.001	INTERGENIC
2L	13726518	2L_13726518_SNP [dm3] 2L_13726518_SNP [dm6]	A	G	2.296e^-7	0.001	INTERGENIC
2L	8474270	2L_8474270_SNP [dm3] 2L_8474270_SNP [dm6]	A	G	2.300e^-7	0.001	INTRON d
2R	7993423	2R_7993423_SNP [dm3] 2R_12105918_SNP [dm6]	A	G	2.423e^-7	0.001	INTRON jeb	TF binding site mE1_TFBS_HSA
3R	7467741	3R_7467741_SNP [dm3] 3R_11642019_SNP [dm6]	C	T	2.448e^-7	0.001	INTRON Csk
2L	9823716	2L_9823716_SNP [dm3] 2L_9823716_SNP [dm6]	C	A	2.491e^-7	0.001	INTRON nAChRalpha6
2L	1029586	2L_1029586_SNP [dm3] 2L_1029586_SNP [dm6]	C	G	2.513e^-7	0.001	INTRON IA-2
2L	19262314	2L_19262314_SNP [dm3] 2L_19262314_SNP [dm6]	G	A	2.543e^-7	0.001	UPSTREAM CR44191 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	20168850	2R_20168850_SNP [dm3] 2R_24281327_SNP [dm6]	C	T	2.550e^-7	0.001	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	1402909	X_1402909_SNP [dm3] X_1508876_SNP [dm6]	C	T	2.647e^-7	0.001	INTRON inc	TF binding site mE1_TFBS_chinmo
2L	15978528	2L_15978528_SNP [dm3] 2L_15978528_SNP [dm6]	T	G	2.669e^-7	0.001	UPSTREAM CG10839 INTERGENIC
2L	14399451	2L_14399451_SNP [dm3] 2L_14399451_SNP [dm6]	C	T	2.686e^-7	0.001	INTRON elB
3L	12411070	3L_12411070_SNP [dm3] 3L_12417970_SNP [dm6]	A	G	2.703e^-7	0.001	UPSTREAM ArfGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	1411824	X_1411824_SNP [dm3] X_1517791_SNP [dm6]	G	C	2.749e^-7	0.001	DOWNSTREAM inc INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12480426	3L_12480426_SNP [dm3] 3L_12487326_SNP [dm6]	G	A	2.786e^-7	0.002	NON_SYNONYMOUS_CODING CG10660 DOWNSTREAM CG33725	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1446850	X_1446850_SNP [dm3] X_1552817_SNP [dm6]	T	A	2.860e^-7	0.002	NON_SYNONYMOUS_CODING Mur2B INTRON Mur2B	TF binding site mE1_TFBS_chinmo
3L	13904424	3L_13904424_SNP [dm3] 3L_13911324_SNP [dm6]	T	A	2.879e^-7	0.002	INTRON Rgl
3L	13359825	3L_13359825_SNP [dm3] 3L_13366725_SNP [dm6]	C	A	2.924e^-7	0.002	INTERGENIC
3L	16568339	3L_16568339_SNP [dm3] 3L_16575239_SNP [dm6]	A	G	2.952e^-7	0.002	SYNONYMOUS_CODING mbf1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	1113797	3R_1113797_SNP [dm3] 3R_5288075_SNP [dm6]	A	C	3.046e^-7	0.002	UPSTREAM mtd INTRON mtd
3R	12300435	3R_12300435_SNP [dm3] 3R_16474713_SNP [dm6]	A	G	3.086e^-7	0.002	SYNONYMOUS_CODING Gyc-89Da	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	5201100	3R_5201100_SNP [dm3] 3R_9375378_SNP [dm6]	G	C	3.096e^-7	0.002	UPSTREAM FER INTRON FER	regulatory region REDfly_CRMs
3L	1172773	3L_1172773_SNP [dm3] 3L_1172773_SNP [dm6]	T	A	3.123e^-7	0.002	SYNONYMOUS_CODING bab2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	19985627	2L_19985627_SNP [dm3] 2L_19985627_SNP [dm6]	C	A	3.141e^-7	0.002	INTRON CG43861	TF binding site mE1_TFBS_inv
3L	2803677	3L_2803677_SNP [dm3] 3L_2803677_SNP [dm6]	T	G	3.192e^-7	0.002	INTRON CG43444
3L	2803679	3L_2803679_DEL [dm3] 3L_2803679_DEL [dm6]	TT	T	3.192e^-7	0.002	INTRON CG43444
2R	8043676	2R_8043676_SNP [dm3] 2R_12156171_SNP [dm6]	G	C	3.203e^-7	0.002	SYNONYMOUS_CODING Prp8	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10250952	2L_10250952_SNP [dm3] 2L_10250952_SNP [dm6]	T	C	3.243e^-7	0.002	SYNONYMOUS_CODING CG31717 UPSTREAM bsk & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Ubx
X	20382514	X_20382514_SNP [dm3] X_20511487_SNP [dm6]	A	T	3.248e^-7	0.002	UPSTREAM CG1812 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20685007	2L_20685007_SNP [dm3] 2L_20685007_SNP [dm6]	G	A	3.272e^-7	0.002	UTR_3_PRIME Hr38
2L	20686888	2L_20686888_SNP [dm3] 2L_20686888_SNP [dm6]	G	A	3.272e^-7	0.002	SYNONYMOUS_CODING Hr38	TF binding site mE1_TFBS_cad
2R	6271564	2R_6271564_SNP [dm3] 2R_10384059_SNP [dm6]	A	G	3.324e^-7	0.002	INTRON CG42732
3R	12420526	3R_12420526_DEL [dm3] 3R_16594804_DEL [dm6]	TATAGTACTTAAGGCCGGAA...	T	3.344e^-7	0.002	UTR_5_PRIME CG14892
2L	15978530	2L_15978530_SNP [dm3] 2L_15978530_SNP [dm6]	A	T	3.359e^-7	0.002	UPSTREAM CG10839 INTERGENIC
2L	6696296	2L_6696296_SNP [dm3] 2L_6696296_SNP [dm6]	C	T	3.431e^-7	0.002	INTRON Tsp
2L	17872081	2L_17872081_SNP [dm3] 2L_17872081_SNP [dm6]	A	T	3.530e^-7	0.002	INTRON CadN2
3R	17068232	3R_17068232_SNP [dm3] 3R_21242510_SNP [dm6]	A	G	3.601e^-7	0.002	UPSTREAM CG5892 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3L	4013869	3L_4013869_SNP [dm3] 3L_4013869_SNP [dm6]	G	A	3.683e^-7	0.002	INTERGENIC
3L	514169	3L_514169_SNP [dm3] 3L_514169_SNP [dm6]	A	G	3.775e^-7	0.002	INTRON klar
2L	13518404	2L_13518404_SNP [dm3] 2L_13518404_SNP [dm6]	T	C	3.810e^-7	0.002	INTRON B4
2L	3154511	2L_3154511_SNP [dm3] 2L_3154511_SNP [dm6]	C	T	3.839e^-7	0.002	INTRON Mad
2L	7528302	2L_7528302_SNP [dm3] 2L_7528302_SNP [dm6]	T	G	3.859e^-7	0.002	INTRON RapGAP1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7529902	2L_7529902_SNP [dm3] 2L_7529902_SNP [dm6]	C	T	3.859e^-7	0.002	UTR_5_PRIME RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	15484577	2R_15484577_SNP [dm3] 2R_19597072_SNP [dm6]	G	C	3.864e^-7	0.002	DOWNSTREAM CG16716 INTRON sm
2L	10356404	2L_10356404_SNP [dm3] 2L_10356404_SNP [dm6]	G	T	3.952e^-7	0.002	UTR_5_PRIME CG5367 UPSTREAM CG5045	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17570617	2R_17570617_SNP [dm3] 2R_21683112_SNP [dm6]	C	A	3.972e^-7	0.002	INTRON CG30263
2R	3799949	2R_3799949_SNP [dm3] 2R_7912444_SNP [dm6]	A	G	3.983e^-7	0.002	INTRON CG30377
2R	3800081	2R_3800081_SNP [dm3] 2R_7912576_SNP [dm6]	T	A	3.983e^-7	0.002	INTRON CG30377
2R	3807401	2R_3807401_SNP [dm3] 2R_7919896_SNP [dm6]	A	T	3.983e^-7	0.002	SYNONYMOUS_CODING Cul1 DOWNSTREAM Or43b	TF binding site mE1_TFBS_cad
2L	9121034	2L_9121034_SNP [dm3] 2L_9121034_SNP [dm6]	A	G	3.993e^-7	0.002	DOWNSTREAM CR44617 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	11994437	3R_11994437_SNP [dm3] 3R_16168715_SNP [dm6]	A	G	4.066e^-7	0.002	SPLICE_SITE_REGION CG6006 INTRON CG6006 EXON CR43472	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	672999	3L_672999_SNP [dm3] 3L_672999_SNP [dm6]	G	T	4.078e^-7	0.002	INTERGENIC	TF binding site mE1_TFBS_cad
2L	21016183	2L_21016183_SNP [dm3] 2L_21016183_SNP [dm6]	T	G	4.084e^-7	0.002	INTRON CG42238
2L	1171061	2L_1171061_SNP [dm3] 2L_1171061_SNP [dm6]	T	C	4.084e^-7	0.002	SYNONYMOUS_CODING CG5118 UPSTREAM Plap DOWNSTREAM CG31922	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	11018907	2L_11018907_SNP [dm3] 2L_11018907_SNP [dm6]	A	T	4.114e^-7	0.002	DOWNSTREAM CG14913 INTRON Samuel
2R	3810137	2R_3810137_SNP [dm3] 2R_7922632_SNP [dm6]	T	A	4.235e^-7	0.002	UPSTREAM Or43b DOWNSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	1444331	X_1444331_SNP [dm3] X_1550298_SNP [dm6]	T	A	4.325e^-7	0.002	INTRON Mur2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	5174705	3L_5174705_DEL [dm3] 3L_5181605_DEL [dm6]	AA	A	4.358e^-7	0.002	INTRON shep
2R	3920261	2R_3920261_SNP [dm3] 2R_8032756_SNP [dm6]	C	A	4.549e^-7	0.002	INTRON Optix	TF binding site mE1_TFBS_sens
2L	11894130	2L_11894130_SNP [dm3] 2L_11894130_SNP [dm6]	C	T	4.604e^-7	0.002	INTRON Pde1c
2L	11894235	2L_11894235_SNP [dm3] 2L_11894235_SNP [dm6]	A	C	4.604e^-7	0.002	INTRON Pde1c
X	15805445	X_15805445_SNP [dm3] X_15911412_SNP [dm6]	T	C	4.652e^-7	0.002	UTR_5_PRIME CG8909 INTRON CG8909
2L	7529952	2L_7529952_SNP [dm3] 2L_7529952_SNP [dm6]	C	T	4.689e^-7	0.002	UTR_5_PRIME RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	4642751	3R_4642751_DEL [dm3] 3R_8817029_DEL [dm6]	TA	T	4.730e^-7	0.002	UTR_3_PRIME CG9821 DOWNSTREAM CG9821
2R	14209751	2R_14209751_SNP [dm3] 2R_18322246_SNP [dm6]	C	T	4.788e^-7	0.002	INTRON sbb	TF binding site BDTNP1_TFBS_twi
2L	4722391	2L_4722391_SNP [dm3] 2L_4722391_SNP [dm6]	C	G	4.915e^-7	0.002	UTR_3_PRIME CG34351
2L	3154506	2L_3154506_SNP [dm3] 2L_3154506_SNP [dm6]	C	A	5.020e^-7	0.002	INTRON Mad
3R	6857462	3R_6857462_SNP [dm3] 3R_11031740_SNP [dm6]	T	C	5.053e^-7	0.002	INTRON CG34114
X	5533616	X_5533616_SNP [dm3] X_5639583_SNP [dm6]	C	T	5.230e^-7	0.002	INTRON CG42492	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14397506	2L_14397506_SNP [dm3] 2L_14397506_SNP [dm6]	G	T	5.232e^-7	0.002	INTRON elB
2R	14944040	2R_14944040_SNP [dm3] 2R_19056535_SNP [dm6]	G	A	5.241e^-7	0.002	UPSTREAM CG15116 INTERGENIC
3L	855926	3L_855926_DEL [dm3] 3L_855926_DEL [dm6]	AAGAC	A	5.375e^-7	0.002	INTRON dpr20
X	1444913	X_1444913_SNP [dm3] X_1550880_SNP [dm6]	A	T	5.378e^-7	0.002	INTRON Mur2B	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5757593	3R_5757593_SNP [dm3] 3R_9931871_SNP [dm6]	A	G	5.434e^-7	0.003	INTRON Glut4EF
2L	20664280	2L_20664280_SNP [dm3] 2L_20664280_SNP [dm6]	C	G	5.663e^-7	0.003	UPSTREAM CR45004 INTRON CG31678
2R	14943677	2R_14943677_SNP [dm3] 2R_19056172_SNP [dm6]	G	T	5.687e^-7	0.003	UPSTREAM CG15116 INTERGENIC
X	19279153	X_19279153_SNP [dm3] X_19385120_SNP [dm6]	T	C	5.813e^-7	0.003	INTRON kek5
2L	15359216	2L_15359216_SNP [dm3] 2L_15359216_SNP [dm6]	T	A	5.869e^-7	0.003	INTERGENIC
2L	588632	2L_588632_SNP [dm3] 2L_588632_SNP [dm6]	T	C	5.903e^-7	0.003	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
2L	589373	2L_589373_SNP [dm3] 2L_589373_SNP [dm6]	G	T	5.903e^-7	0.003	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_Trl
3L	5464414	3L_5464414_SNP [dm3] 3L_5471314_SNP [dm6]	T	C	5.905e^-7	0.003	INTERGENIC
3L	5464423	3L_5464423_SNP [dm3] 3L_5471323_SNP [dm6]	A	G	5.905e^-7	0.003	INTERGENIC
2L	7531544	2L_7531544_SNP [dm3] 2L_7531544_SNP [dm6]	A	G	6.013e^-7	0.003	UPSTREAM RapGAP1 INTRON RapGAP1
2L	3099314	2L_3099314_SNP [dm3] 2L_3099314_SNP [dm6]	A	C	6.057e^-7	0.003	INTRON toc
2L	3099339	2L_3099339_SNP [dm3] 2L_3099339_SNP [dm6]	G	C	6.057e^-7	0.003	INTRON toc
2L	3099351	2L_3099351_SNP [dm3] 2L_3099351_SNP [dm6]	C	T	6.057e^-7	0.003	INTRON toc
2R	8899595	2R_8899595_SNP [dm3] 2R_13012090_SNP [dm6]	T	C	6.064e^-7	0.003	INTERGENIC
2L	13684842	2L_13684842_INS [dm3] 2L_13684842_INS [dm6]	T	TAT	6.236e^-7	0.003	INTRON CG31814
2L	17789222	2L_17789222_SNP [dm3] 2L_17789222_SNP [dm6]	T	C	6.288e^-7	0.003	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10601284	2L_10601284_SNP [dm3] 2L_10601284_SNP [dm6]	C	T	6.331e^-7	0.003	INTRON Trim9
3R	12279392	3R_12279392_SNP [dm3] 3R_16453670_SNP [dm6]	G	A	6.331e^-7	0.003	UTR_5_PRIME Pak3 UPSTREAM CG10405	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	14944370	2R_14944370_SNP [dm3] 2R_19056865_SNP [dm6]	G	A	6.385e^-7	0.003	UPSTREAM CG15116 INTERGENIC
2R	14944396	2R_14944396_SNP [dm3] 2R_19056891_SNP [dm6]	G	T	6.385e^-7	0.003	UPSTREAM CG15116 INTERGENIC
3R	12277696	3R_12277696_SNP [dm3] 3R_16451974_SNP [dm6]	A	G	6.414e^-7	0.003	SYNONYMOUS_CODING Pak3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26888262	3R_26888262_SNP [dm3] 3R_31062540_SNP [dm6]	G	C	6.564e^-7	0.003	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	12474067	3L_12474067_SNP [dm3] 3L_12480967_SNP [dm6]	G	A	6.581e^-7	0.003	INTRON CG10663
3L	855912	3L_855912_SNP [dm3] 3L_855912_SNP [dm6]	A	C	6.612e^-7	0.003	INTRON dpr20
3L	12478387	3L_12478387_INS [dm3] 3L_12485287_INS [dm6]	T	TT	6.707e^-7	0.003	UPSTREAM CG33725 & 1 other INTRON CG33725	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3154508	2L_3154508_SNP [dm3] 2L_3154508_SNP [dm6]	C	T	6.740e^-7	0.003	INTRON Mad
3L	2648693	3L_2648693_SNP [dm3] 3L_2648693_SNP [dm6]	C	A	6.821e^-7	0.003	SYNONYMOUS_CODING CG1246
3L	2650153	3L_2650153_SNP [dm3] 3L_2650153_SNP [dm6]	A	G	6.821e^-7	0.003	UTR_3_PRIME CG1246 DOWNSTREAM Aats-pro	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2659820	3L_2659820_SNP [dm3] 3L_2659820_SNP [dm6]	T	G	6.821e^-7	0.003	SYNONYMOUS_CODING CG33233 INTRON Fife
2R	15484642	2R_15484642_SNP [dm3] 2R_19597137_SNP [dm6]	T	A	6.998e^-7	0.003	DOWNSTREAM CG16716 INTRON sm
2R	15484659	2R_15484659_INS [dm3] 2R_19597154_INS [dm6]	A	AAT	6.998e^-7	0.003	DOWNSTREAM CG16716 INTRON sm
2R	7298565	2R_7298565_INS [dm3] 2R_11411060_INS [dm6]	A	ATA	7.008e^-7	0.003	UPSTREAM CG34054 DOWNSTREAM Drip INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	13936278	2L_13936278_SNP [dm3] 2L_13936278_SNP [dm6]	G	C	7.009e^-7	0.003	INTRON Ance-3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1151448	2L_1151448_DEL [dm3] 2L_1151448_DEL [dm6]	CCAACC	C	7.022e^-7	0.003	UTR_3_PRIME Vps29 UPSTREAM Tfb4 DOWNSTREAM capt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5464503	3L_5464503_SNP [dm3] 3L_5471403_SNP [dm6]	C	A	7.080e^-7	0.003	INTERGENIC
2R	17942342	2R_17942342_SNP [dm3] 2R_22054837_SNP [dm6]	A	G	7.338e^-7	0.003	INTERGENIC
3L	12475500	3L_12475500_SNP [dm3] 3L_12482400_SNP [dm6]	C	A	7.453e^-7	0.003	UPSTREAM CG33725 INTRON CG10663
2L	18792029	2L_18792029_SNP [dm3] 2L_18792029_SNP [dm6]	A	G	7.544e^-7	0.003	INTRON ham
2R	18241989	2R_18241989_SNP [dm3] 2R_22354484_SNP [dm6]	G	T	7.651e^-7	0.003	UTR_5_PRIME Liprin-gamma INTRON Liprin-gamma
2L	7263994	2L_7263994_SNP [dm3] 2L_7263994_SNP [dm6]	C	T	7.768e^-7	0.003	INTRON Wnt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4367046	2L_4367046_SNP [dm3] 2L_4367046_SNP [dm6]	A	C	7.791e^-7	0.003	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4374814	2L_4374814_SNP [dm3] 2L_4374814_SNP [dm6]	C	T	7.791e^-7	0.003	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8477046	2L_8477046_SNP [dm3] 2L_8477046_SNP [dm6]	T	G	7.791e^-7	0.003	UPSTREAM CheA29a INTRON d
2L	8477163	2L_8477163_SNP [dm3] 2L_8477163_SNP [dm6]	G	A	7.791e^-7	0.003	UPSTREAM CheA29a INTRON d
2L	10316018	2L_10316018_SNP [dm3] 2L_10316018_SNP [dm6]	T	C	7.892e^-7	0.003	INTRON CG4972	TF binding site mE1_TFBS_sens
2R	18426865	2R_18426865_SNP [dm3] 2R_22539360_SNP [dm6]	G	A	8.115e^-7	0.003	INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13904431	3L_13904431_SNP [dm3] 3L_13911331_SNP [dm6]	A	C	8.204e^-7	0.003	INTRON Rgl
X	6303154	X_6303154_SNP [dm3] X_6409121_SNP [dm6]	C	G	8.215e^-7	0.003	INTERGENIC
2R	8540058	2R_8540058_SNP [dm3] 2R_12652553_SNP [dm6]	T	A	8.385e^-7	0.003	UPSTREAM ZnT49B & 1 other INTERGENIC
2L	2526126	2L_2526126_SNP [dm3] 2L_2526126_SNP [dm6]	C	A	8.402e^-7	0.003	INTERGENIC
2L	9076552	2L_9076552_SNP [dm3] 2L_9076552_SNP [dm6]	T	C	8.419e^-7	0.003	UPSTREAM CG12439 INTERGENIC
2L	15359234	2L_15359234_SNP [dm3] 2L_15359234_SNP [dm6]	C	G	8.677e^-7	0.004	INTERGENIC
2L	14250962	2L_14250962_SNP [dm3] 2L_14250962_SNP [dm6]	A	C	8.689e^-7	0.004	INTERGENIC
3L	12478421	3L_12478421_SNP [dm3] 3L_12485321_SNP [dm6]	A	C	8.987e^-7	0.004	UPSTREAM CG33725 & 1 other INTRON CG33725	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1785424	2L_1785424_SNP [dm3] 2L_1785424_SNP [dm6]	A	G	9.002e^-7	0.004	DOWNSTREAM Gr22e INTERGENIC
2L	1785430	2L_1785430_SNP [dm3] 2L_1785430_SNP [dm6]	T	A	9.002e^-7	0.004	DOWNSTREAM Gr22e INTERGENIC
2R	16395644	2R_16395644_SNP [dm3] 2R_20508139_SNP [dm6]	C	G	9.080e^-7	0.004	UPSTREAM CR44646 INTERGENIC
2L	6693266	2L_6693266_SNP [dm3] 2L_6693266_SNP [dm6]	C	T	9.200e^-7	0.004	INTRON Tsp	TF binding site mE1_TFBS_chinmo
X	8692227	X_8692227_SNP [dm3] X_8798194_SNP [dm6]	C	T	9.283e^-7	0.004	INTRON Lim1
2L	11370641	2L_11370641_SNP [dm3] 2L_11370641_SNP [dm6]	T	C	9.467e^-7	0.004	INTRON salr
X	1418288	X_1418288_SNP [dm3] X_1524255_SNP [dm6]	C	G	9.692e^-7	0.004	UTR_3_PRIME Mur2B	TF binding site mE1_TFBS_chinmo
X	1418567	X_1418567_DEL [dm3] X_1524534_DEL [dm6]	GAGTTTCCTCG...	G	9.692e^-7	0.004	INTRON Mur2B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1424961	X_1424961_SNP [dm3] X_1530928_SNP [dm6]	C	T	9.692e^-7	0.004	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
X	1425304	X_1425304_SNP [dm3] X_1531271_SNP [dm6]	T	C	9.692e^-7	0.004	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
X	1431463	X_1431463_SNP [dm3] X_1537430_SNP [dm6]	C	T	9.692e^-7	0.004	INTRON Mur2B
X	1431474	X_1431474_SNP [dm3] X_1537441_SNP [dm6]	A	T	9.692e^-7	0.004	INTRON Mur2B
X	1435517	X_1435517_SNP [dm3] X_1541484_SNP [dm6]	C	T	9.692e^-7	0.004	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
2R	8588312	2R_8588312_SNP [dm3] 2R_12700807_SNP [dm6]	G	A	9.843e^-7	0.004	UTR_3_PRIME wuc
2L	19144778	2L_19144778_SNP [dm3] 2L_19144778_SNP [dm6]	A	G	9.888e^-7	0.004	INTRON brat
2R	15096404	2R_15096404_SNP [dm3] 2R_19208899_SNP [dm6]	A	T	9.974e^-7	0.004	INTRON hppy
2R	15096407	2R_15096407_SNP [dm3] 2R_19208902_SNP [dm6]	T	G	9.974e^-7	0.004	INTRON hppy
2L	3154486	2L_3154486_SNP [dm3] 2L_3154486_SNP [dm6]	G	A	1.002e^-6	0.004	INTRON Mad
3L	12411633	3L_12411633_SNP [dm3] 3L_12418533_SNP [dm6]	T	G	1.006e^-6	0.004	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	12477834	3L_12477834_DEL [dm3] 3L_12484734_DEL [dm6]	TATT	T	1.023e^-6	0.004	UPSTREAM CG33725 INTRON CG10663 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21000533	3R_21000533_INS [dm3] 3R_25174811_INS [dm6]	C	AA	1.061e^-6	0.004	INTRON lobo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	11538419	3L_11538419_SNP [dm3] 3L_11545319_SNP [dm6]	C	T	1.069e^-6	0.004	INTRON Mob2
3L	4521212	3L_4521212_SNP [dm3] 3L_4521212_SNP [dm6]	C	T	1.074e^-6	0.004	INTRON Tie
2R	3799844	2R_3799844_DEL [dm3] 2R_7912339_DEL [dm6]	GTACCACTATG...	AA	1.079e^-6	0.004	INTRON CG30377
2L	11878062	2L_11878062_SNP [dm3] 2L_11878062_SNP [dm6]	T	C	1.088e^-6	0.004	UPSTREAM Pde1c INTRON Pde1c
2L	1785564	2L_1785564_SNP [dm3] 2L_1785564_SNP [dm6]	G	A	1.098e^-6	0.004	DOWNSTREAM Gr22e INTERGENIC
3L	14372459	3L_14372459_SNP [dm3] 3L_14379359_SNP [dm6]	A	G	1.100e^-6	0.004	INTERGENIC
3R	5201094	3R_5201094_SNP [dm3] 3R_9375372_SNP [dm6]	A	T	1.102e^-6	0.004	UPSTREAM FER INTRON FER	regulatory region REDfly_CRMs
2R	17316757	2R_17316757_SNP [dm3] 2R_21429252_SNP [dm6]	C	T	1.107e^-6	0.004	INTRON Sdc	TF binding site BDTNP1_TFBS_sna
X	17971482	X_17971482_SNP [dm3] X_18077449_SNP [dm6]	G	A	1.114e^-6	0.004	INTRON Dhc16F
3L	4016625	3L_4016625_SNP [dm3] 3L_4016625_SNP [dm6]	A	C	1.120e^-6	0.004	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	13129694	2L_13129694_SNP [dm3] 2L_13129694_SNP [dm6]	A	C	1.149e^-6	0.004	UPSTREAM CG5122 INTERGENIC
3L	9867118	3L_9867118_SNP [dm3] 3L_9874018_SNP [dm6]	C	A	1.154e^-6	0.004	INTERGENIC
3L	12949042	3L_12949042_SNP [dm3] 3L_12955942_SNP [dm6]	G	T	1.155e^-6	0.004	INTERGENIC	TF binding site mE1_TFBS_inv
3R	9872595	3R_9872595_SNP [dm3] 3R_14046873_SNP [dm6]	C	T	1.167e^-6	0.004	INTERGENIC
3L	12480898	3L_12480898_SNP [dm3] 3L_12487798_SNP [dm6]	G	A	1.169e^-6	0.004	INTRON CG10660	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	1431830	X_1431830_SNP [dm3] X_1537797_SNP [dm6]	T	G	1.179e^-6	0.004	INTRON Mur2B
2L	9843113	2L_9843113_INS [dm3] 2L_9843113_INS [dm6]	G	GACTCCATGATTTTCTTTAA...	1.207e^-6	0.005	INTRON nAChRalpha6
2L	19962202	2L_19962202_SNP [dm3] 2L_19962202_SNP [dm6]	T	A	1.208e^-6	0.005	NON_SYNONYMOUS_CODING CG13965 UPSTREAM CG16772 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6868330	2L_6868330_INS [dm3] 2L_6868330_INS [dm6]	T	TT	1.225e^-6	0.005	INTRON Nha1
2L	2148222	2L_2148222_SNP [dm3] 2L_2148222_SNP [dm6]	C	T	1.227e^-6	0.005	SYNONYMOUS_CODING CG7261 UPSTREAM CG11723	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	11811970	2R_11811970_SNP [dm3] 2R_15924465_SNP [dm6]	A	G	1.234e^-6	0.005	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11872365	2L_11872365_SNP [dm3] 2L_11872365_SNP [dm6]	T	A	1.247e^-6	0.005	INTRON Pde1c
2L	468651	2L_468651_SNP [dm3] 2L_468651_SNP [dm6]	C	G	1.279e^-6	0.005	INTRON CG4297
3L	12411550	3L_12411550_SNP [dm3] 3L_12418450_SNP [dm6]	G	A	1.300e^-6	0.005	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
2L	9473288	2L_9473288_SNP [dm3] 2L_9473288_SNP [dm6]	G	C	1.304e^-6	0.005	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	6966696	3R_6966696_SNP [dm3] 3R_11140974_SNP [dm6]	A	T	1.322e^-6	0.005	INTERGENIC
3R	6966719	3R_6966719_SNP [dm3] 3R_11140997_SNP [dm6]	A	G	1.322e^-6	0.005	INTERGENIC
2L	13684922	2L_13684922_SNP [dm3] 2L_13684922_SNP [dm6]	C	A	1.331e^-6	0.005	INTRON CG31814
2L	1821052	2L_1821052_SNP [dm3] 2L_1821052_SNP [dm6]	C	A	1.331e^-6	0.005	DOWNSTREAM CG31933 INTERGENIC
2L	6414577	2L_6414577_SNP [dm3] 2L_6414577_SNP [dm6]	T	C	1.341e^-6	0.005	UTR_3_PRIME CG13982 DOWNSTREAM Tig & 1 other
2L	3803223	2L_3803223_SNP [dm3] 2L_3803223_SNP [dm6]	C	T	1.367e^-6	0.005	UPSTREAM Reph DOWNSTREAM CG3921 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	5019187	2L_5019187_SNP [dm3] 2L_5019187_SNP [dm6]	A	T	1.399e^-6	0.005	INTRON vkg
2L	7812800	2L_7812800_SNP [dm3] 2L_7812800_SNP [dm6]	C	T	1.399e^-6	0.005	INTRON LanB1	TF binding site BDTNP1_TFBS_twi
3L	4512891	3L_4512891_SNP [dm3] 3L_4512891_SNP [dm6]	A	G	1.404e^-6	0.005	INTRON Tie	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13887297	2L_13887297_SNP [dm3] 2L_13887297_SNP [dm6]	C	T	1.422e^-6	0.005	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	1423766	X_1423766_SNP [dm3] X_1529733_SNP [dm6]	C	T	1.432e^-6	0.005	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
2R	14563334	2R_14563334_SNP [dm3] 2R_18675829_SNP [dm6]	A	C	1.447e^-6	0.005	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	8474278	2L_8474278_SNP [dm3] 2L_8474278_SNP [dm6]	G	A	1.469e^-6	0.005	INTRON d
2L	8474287	2L_8474287_SNP [dm3] 2L_8474287_SNP [dm6]	G	A	1.469e^-6	0.005	INTRON d
3L	12391840	3L_12391840_SNP [dm3] 3L_12398740_SNP [dm6]	A	G	1.481e^-6	0.005	DOWNSTREAM Smyd4 INTRON CG32104	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12391846	3L_12391846_INS [dm3] 3L_12398746_INS [dm6]	GC	TATAATACATTTTTATAATA...	1.481e^-6	0.005	DOWNSTREAM Smyd4 INTRON CG32104	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	1438269	X_1438269_INS [dm3] X_1544236_INS [dm6]	T	TTTCCTCCT	1.485e^-6	0.005	INTRON Mur2B	TF binding site mE1_TFBS_HSA
3R	22073006	3R_22073006_SNP [dm3] 3R_26247284_SNP [dm6]	A	T	1.503e^-6	0.005	INTRON CR42745
X	3609959	X_3609959_SNP [dm3] X_3715926_SNP [dm6]	G	A	1.513e^-6	0.005	INTRON Rala
2L	6693142	2L_6693142_SNP [dm3] 2L_6693142_SNP [dm6]	T	C	1.524e^-6	0.005	INTRON Tsp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1418109	X_1418109_SNP [dm3] X_1524076_SNP [dm6]	C	A	1.539e^-6	0.005	UTR_3_PRIME Mur2B	TF binding site mE1_TFBS_chinmo
3L	19064503	3L_19064503_SNP [dm3] 3L_19071403_SNP [dm6]	T	C	1.540e^-6	0.005	INTRON Mkp3
3L	12410223	3L_12410223_SNP [dm3] 3L_12417123_SNP [dm6]	T	A	1.545e^-6	0.005	INTRON ArfGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13636608	3L_13636608_SNP [dm3] 3L_13643508_SNP [dm6]	G	A	1.548e^-6	0.005	INTRON bru-3
X	21908289	X_21908289_SNP [dm3] X_22506453_SNP [dm6]	A	G	1.563e^-6	0.006	INTRON l_1_G0196	transposable element FlyBase
3L	18936125	3L_18936125_SNP [dm3] 3L_18943025_SNP [dm6]	A	T	1.579e^-6	0.006	INTRON CG32204
3L	18936130	3L_18936130_SNP [dm3] 3L_18943030_SNP [dm6]	C	T	1.579e^-6	0.006	INTRON CG32204
2L	13154285	2L_13154285_SNP [dm3] 2L_13154285_SNP [dm6]	T	G	1.607e^-6	0.006	INTERGENIC
2L	7526058	2L_7526058_SNP [dm3] 2L_7526058_SNP [dm6]	G	A	1.609e^-6	0.006	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	26809338	3R_26809338_SNP [dm3] 3R_30983616_SNP [dm6]	G	T	1.611e^-6	0.006	INTRON 5-HT7
3L	16505987	3L_16505987_SNP [dm3] 3L_16512887_SNP [dm6]	T	A	1.613e^-6	0.006	INTRON CG43373
3L	12408841	3L_12408841_SNP [dm3] 3L_12415741_SNP [dm6]	A	G	1.613e^-6	0.006	SYNONYMOUS_CODING ArfGAP1 UPSTREAM CG32103	TF binding site mE1_TFBS_chinmo
3L	12413971	3L_12413971_SNP [dm3] 3L_12420871_SNP [dm6]	C	T	1.613e^-6	0.006	INTERGENIC
3L	12417385	3L_12417385_SNP [dm3] 3L_12424285_SNP [dm6]	G	A	1.613e^-6	0.006	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417521	3L_12417521_SNP [dm3] 3L_12424421_SNP [dm6]	T	C	1.613e^-6	0.006	INTRON toe	TF binding site mE1_TFBS_cad
2R	14620688	2R_14620688_DEL [dm3] 2R_18733183_DEL [dm6]	GTGGCAG	G	1.614e^-6	0.006	INTRON Hs3st-A
X	6975816	X_6975816_SNP [dm3] X_7081783_SNP [dm6]	T	A	1.643e^-6	0.006	INTRON Sxl
2L	7298847	2L_7298847_SNP [dm3] 2L_7298847_SNP [dm6]	C	A	1.647e^-6	0.006	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12214745	3R_12214745_SNP [dm3] 3R_16389023_SNP [dm6]	T	C	1.664e^-6	0.006	INTRON ss	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16240190	2R_16240190_SNP [dm3] 2R_20352685_SNP [dm6]	C	T	1.671e^-6	0.006	INTERGENIC
2L	11548564	2L_11548564_SNP [dm3] 2L_11548564_SNP [dm6]	C	A	1.695e^-6	0.006	DOWNSTREAM CR44494 INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	11122621	2L_11122621_SNP [dm3] 2L_11122621_SNP [dm6]	G	T	1.709e^-6	0.006	UTR_3_PRIME Csl4 UPSTREAM CG14921	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6690790	2L_6690790_SNP [dm3] 2L_6690790_SNP [dm6]	G	C	1.716e^-6	0.006	INTRON Tsp	TF binding site mE1_TFBS_cad
2L	4589865	2L_4589865_SNP [dm3] 2L_4589865_SNP [dm6]	A	G	1.767e^-6	0.006	INTRON dp
3L	11053484	3L_11053484_SNP [dm3] 3L_11060384_SNP [dm6]	T	A	1.803e^-6	0.006	DOWNSTREAM CG7888 INTRON CG6321
3R	12496995	3R_12496995_SNP [dm3] 3R_16671273_SNP [dm6]	C	T	1.806e^-6	0.006	INTRON Ubx
3R	12497071	3R_12497071_SNP [dm3] 3R_16671349_SNP [dm6]	G	A	1.806e^-6	0.006	INTRON Ubx
2L	1794937	2L_1794937_SNP [dm3] 2L_1794937_SNP [dm6]	A	G	1.832e^-6	0.006	UPSTREAM Gr22a INTERGENIC
2R	13532631	2R_13532631_SNP [dm3] 2R_17645126_SNP [dm6]	T	G	1.849e^-6	0.006	INTERGENIC
3L	2801082	3L_2801082_SNP [dm3] 3L_2801082_SNP [dm6]	T	A	1.863e^-6	0.006	INTRON CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	10201294	X_10201294_SNP [dm3] X_10307261_SNP [dm6]	G	A	1.864e^-6	0.006	INTRON alpha-Man-I
X	7991857	X_7991857_DEL [dm3] X_8097824_DEL [dm6]	TATAAGTT	T	1.879e^-6	0.006	INTRON CG2258	TF binding site mE1_TFBS_cad
2R	15096376	2R_15096376_SNP [dm3] 2R_19208871_SNP [dm6]	C	T	1.890e^-6	0.006	INTRON hppy
3R	4366809	3R_4366809_DEL [dm3] 3R_8541087_DEL [dm6]	AACCAAGTA	A	1.891e^-6	0.006	INTERGENIC
X	1442194	X_1442194_DEL [dm3] X_1548161_DEL [dm6]	AA	A	1.942e^-6	0.006	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
X	1433333	X_1433333_SNP [dm3] X_1539300_SNP [dm6]	T	A	1.966e^-6	0.007	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
X	1433371	X_1433371_SNP [dm3] X_1539338_SNP [dm6]	C	T	1.966e^-6	0.007	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
3L	10948604	3L_10948604_SNP [dm3] 3L_10955504_SNP [dm6]	C	T	1.967e^-6	0.007	INTERGENIC
X	16859820	X_16859820_SNP [dm3] X_16965787_SNP [dm6]	C	T	2.002e^-6	0.007	INTRON CG9086	TF binding site BDTNP1_TFBS_twi
X	9680737	X_9680737_SNP [dm3] X_9786704_SNP [dm6]	G	T	2.013e^-6	0.007	INTRON CG32698
X	14037179	X_14037179_SNP [dm3] X_14143146_SNP [dm6]	T	C	2.074e^-6	0.007	INTERGENIC
3L	2539220	3L_2539220_SNP [dm3] 3L_2539220_SNP [dm6]	A	T	2.086e^-6	0.007	INTRON Spn
3L	2539221	3L_2539221_SNP [dm3] 3L_2539221_SNP [dm6]	A	G	2.086e^-6	0.007	INTRON Spn
3L	2539253	3L_2539253_SNP [dm3] 3L_2539253_SNP [dm6]	A	T	2.086e^-6	0.007	INTRON Spn
3L	2539329	3L_2539329_DEL [dm3] 3L_2539329_DEL [dm6]	CTC	C	2.086e^-6	0.007	INTRON Spn
3L	2539356	3L_2539356_DEL [dm3] 3L_2539356_DEL [dm6]	TT	G	2.086e^-6	0.007	INTRON Spn
3L	2539411	3L_2539411_SNP [dm3] 3L_2539411_SNP [dm6]	G	A	2.086e^-6	0.007	INTRON Spn
3L	2539433	3L_2539433_SNP [dm3] 3L_2539433_SNP [dm6]	C	A	2.086e^-6	0.007	INTRON Spn
3L	2539438	3L_2539438_SNP [dm3] 3L_2539438_SNP [dm6]	C	A	2.086e^-6	0.007	INTRON Spn
3L	2539491	3L_2539491_DEL [dm3] 3L_2539491_DEL [dm6]	ACAGACTTA	A	2.086e^-6	0.007	INTRON Spn
X	21086497	X_21086497_SNP [dm3] X_21215470_SNP [dm6]	G	T	2.086e^-6	0.007	INTRON CG32521
3L	4016291	3L_4016291_SNP [dm3] 3L_4016291_SNP [dm6]	G	T	2.105e^-6	0.007	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	4016943	3L_4016943_SNP [dm3] 3L_4016943_SNP [dm6]	C	T	2.105e^-6	0.007	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	1407834	X_1407834_SNP [dm3] X_1513801_SNP [dm6]	T	A	2.124e^-6	0.007	UPSTREAM CG14795 INTRON inc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	1420678	X_1420678_SNP [dm3] X_1526645_SNP [dm6]	G	T	2.124e^-6	0.007	INTRON Mur2B
2L	7293270	2L_7293270_SNP [dm3] 2L_7293270_SNP [dm6]	G	C	2.142e^-6	0.007	INTERGENIC	regulatory region REDfly_CRMs
2R	13916364	2R_13916364_SNP [dm3] 2R_18028859_SNP [dm6]	G	T	2.142e^-6	0.007	INTERGENIC
3L	8011053	3L_8011053_SNP [dm3] 3L_8017953_SNP [dm6]	A	T	2.147e^-6	0.007	INTRON nmo
2L	13726532	2L_13726532_SNP [dm3] 2L_13726532_SNP [dm6]	G	A	2.149e^-6	0.007	INTERGENIC
X	13573831	X_13573831_SNP [dm3] X_13679798_SNP [dm6]	T	G	2.206e^-6	0.007	INTRON CG12177	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17927016	2R_17927016_SNP [dm3] 2R_22039511_SNP [dm6]	A	T	2.267e^-6	0.007	UTR_5_PRIME CG34370 UPSTREAM CG34370
2R	12972863	2R_12972863_SNP [dm3] 2R_17085358_SNP [dm6]	A	C	2.269e^-6	0.007	INTRON CG30460
3L	2662026	3L_2662026_SNP [dm3] 3L_2662026_SNP [dm6]	C	T	2.271e^-6	0.007	SYNONYMOUS_CODING CG33234 DOWNSTREAM CG33233 INTRON Fife
3R	10589325	3R_10589325_SNP [dm3] 3R_14763603_SNP [dm6]	T	C	2.276e^-6	0.007	INTRON jvl
3L	11300491	3L_11300491_SNP [dm3] 3L_11307391_SNP [dm6]	G	A	2.301e^-6	0.007	INTERGENIC
2L	4589863	2L_4589863_SNP [dm3] 2L_4589863_SNP [dm6]	C	T	2.306e^-6	0.007	INTRON dp
3R	24103774	3R_24103774_SNP [dm3] 3R_28278052_SNP [dm6]	A	T	2.337e^-6	0.007	INTERGENIC
3L	7903627	3L_7903627_SNP [dm3] 3L_7910527_SNP [dm6]	C	A	2.365e^-6	0.007	INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17542218	2L_17542218_SNP [dm3] 2L_17542218_SNP [dm6]	G	C	2.375e^-6	0.007	EXON CR43304
2L	2946023	2L_2946023_SNP [dm3] 2L_2946023_SNP [dm6]	G	A	2.380e^-6	0.007	UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3597369	2L_3597369_DEL [dm3] 2L_3597369_DEL [dm6]	TTTCTTG	T	2.383e^-6	0.007	INTERGENIC
3R	9433038	3R_9433038_SNP [dm3] 3R_13607316_SNP [dm6]	G	A	2.385e^-6	0.007	UTR_3_PRIME CG9759 DOWNSTREAM CG9759
X	2657076	X_2657076_SNP [dm3] X_2763043_SNP [dm6]	G	C	2.410e^-6	0.008	INTRON kirre
3L	11876460	3L_11876460_SNP [dm3] 3L_11883360_SNP [dm6]	G	A	2.413e^-6	0.008	INTRON CG44837 & 1 other
3R	26872500	3R_26872500_SNP [dm3] 3R_31046778_SNP [dm6]	A	T	2.444e^-6	0.008	UTR_3_PRIME CanA1	TF binding site BDTNP1_TFBS_prd
3L	4781327	3L_4781327_SNP [dm3] 3L_4781327_SNP [dm6]	C	A	2.444e^-6	0.008	INTRON RhoGEF64C
2L	12053535	2L_12053535_SNP [dm3] 2L_12053535_SNP [dm6]	A	C	2.473e^-6	0.008	INTRON JhI-21
3L	11154307	3L_11154307_SNP [dm3] 3L_11161207_SNP [dm6]	A	T	2.484e^-6	0.008	INTRON CG32082
2R	7156121	2R_7156121_SNP [dm3] 2R_11268616_SNP [dm6]	C	T	2.490e^-6	0.008	NON_SYNONYMOUS_CODING Cpr47Ef
2L	1795551	2L_1795551_SNP [dm3] 2L_1795551_SNP [dm6]	G	T	2.502e^-6	0.008	UPSTREAM Gr22a INTERGENIC
2L	1795605	2L_1795605_INS [dm3] 2L_1795605_INS [dm6]	T	TT	2.502e^-6	0.008	UPSTREAM Gr22a INTERGENIC
2L	1822233	2L_1822233_SNP [dm3] 2L_1822233_SNP [dm6]	G	A	2.502e^-6	0.008	SYNONYMOUS_CODING CG31933
2L	1823306	2L_1823306_SNP [dm3] 2L_1823306_SNP [dm6]	G	A	2.502e^-6	0.008	UTR_5_PRIME CG31933 DOWNSTREAM CG31664
2L	1824244	2L_1824244_SNP [dm3] 2L_1824244_SNP [dm6]	A	G	2.502e^-6	0.008	UTR_3_PRIME CG31664 UPSTREAM CG31933 DOWNSTREAM CG31664
2L	1824317	2L_1824317_SNP [dm3] 2L_1824317_SNP [dm6]	C	A	2.502e^-6	0.008	UTR_3_PRIME CG31664 UPSTREAM CG31933
3L	2539162	3L_2539162_SNP [dm3] 3L_2539162_SNP [dm6]	T	A	2.511e^-6	0.008	INTRON Spn
3L	2539185	3L_2539185_SNP [dm3] 3L_2539185_SNP [dm6]	A	G	2.511e^-6	0.008	INTRON Spn
3L	2539520	3L_2539520_SNP [dm3] 3L_2539520_SNP [dm6]	A	C	2.511e^-6	0.008	INTRON Spn
2L	9820259	2L_9820259_SNP [dm3] 2L_9820259_SNP [dm6]	A	G	2.547e^-6	0.008	INTRON nAChRalpha6
3L	12333721	3L_12333721_SNP [dm3] 3L_12340621_SNP [dm6]	C	T	2.564e^-6	0.008	INTRON CrzR	TF binding site mE1_TFBS_cad
3L	3145754	3L_3145754_SNP [dm3] 3L_3145754_SNP [dm6]	G	A	2.570e^-6	0.008	NON_SYNONYMOUS_CODING CG12082 DOWNSTREAM CG1291	TF binding site mE1_TFBS_chinmo
2R	17953575	2R_17953575_SNP [dm3] 2R_22066070_SNP [dm6]	C	G	2.572e^-6	0.008	UPSTREAM Snp & 1 other INTRON Snp
X	6975779	X_6975779_SNP [dm3] X_7081746_SNP [dm6]	T	C	2.585e^-6	0.008	INTRON Sxl	TF binding site mE1_TFBS_zfh1
3R	20218850	3R_20218850_SNP [dm3] 3R_24393128_SNP [dm6]	G	A	2.591e^-6	0.008	DOWNSTREAM nAChRalpha1 INTRON CG13616	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7365933	2R_7365933_SNP [dm3] 2R_11478428_SNP [dm6]	C	T	2.635e^-6	0.008	INTRON inv	TF binding site BDTNP1_TFBS_dl
2L	1121079	2L_1121079_INS [dm3] 2L_1121079_INS [dm6]	T	TTT	2.637e^-6	0.008	INTRON Pino	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8023631	2L_8023631_SNP [dm3] 2L_8023631_SNP [dm6]	C	G	2.647e^-6	0.008	INTRON Tg
3L	3052477	3L_3052477_SNP [dm3] 3L_3052477_SNP [dm6]	C	T	2.649e^-6	0.008	UPSTREAM CG1271 DOWNSTREAM CG32485 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10803561	2R_10803561_SNP [dm3] 2R_14916056_SNP [dm6]	T	A	2.652e^-6	0.008	INTRON CG10249
2R	10803849	2R_10803849_SNP [dm3] 2R_14916344_SNP [dm6]	T	C	2.652e^-6	0.008	INTRON CG10249
2L	6696213	2L_6696213_SNP [dm3] 2L_6696213_SNP [dm6]	T	G	2.687e^-6	0.008	INTRON Tsp
2L	6696305	2L_6696305_SNP [dm3] 2L_6696305_SNP [dm6]	G	A	2.687e^-6	0.008	INTRON Tsp
3R	11811124	3R_11811124_SNP [dm3] 3R_15985402_SNP [dm6]	A	T	2.708e^-6	0.008	UPSTREAM srp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11811125	3R_11811125_SNP [dm3] 3R_15985403_SNP [dm6]	A	C	2.708e^-6	0.008	UPSTREAM srp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1788823	2L_1788823_SNP [dm3] 2L_1788823_SNP [dm6]	T	G	2.718e^-6	0.008	DOWNSTREAM Gr22d INTERGENIC
2L	1788824	2L_1788824_SNP [dm3] 2L_1788824_SNP [dm6]	A	C	2.718e^-6	0.008	DOWNSTREAM Gr22d INTERGENIC
3L	14293328	3L_14293328_SNP [dm3] 3L_14300228_SNP [dm6]	T	A	2.723e^-6	0.008	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	17490572	2L_17490572_SNP [dm3] 2L_17490572_SNP [dm6]	A	C	2.737e^-6	0.008	INTRON qua	TF binding site mE1_TFBS_HSA
2L	3672181	2L_3672181_SNP [dm3] 2L_3672181_SNP [dm6]	G	T	2.769e^-6	0.008	INTRON CG34340
2L	3672196	2L_3672196_SNP [dm3] 2L_3672196_SNP [dm6]	G	A	2.769e^-6	0.008	INTRON CG34340
2L	6413381	2L_6413381_SNP [dm3] 2L_6413381_SNP [dm6]	C	G	2.773e^-6	0.008	INTRON CG13982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19117721	3L_19117721_SNP [dm3] 3L_19124621_SNP [dm6]	A	G	2.773e^-6	0.008	INTRON CG14082
2L	9199454	2L_9199454_SNP [dm3] 2L_9199454_SNP [dm6]	A	G	2.783e^-6	0.008	INTRON tai
2R	20198381	2R_20198381_SNP [dm3] 2R_24310858_SNP [dm6]	C	T	2.854e^-6	0.008	INTRON betaTub60D	TF binding site mE1_TFBS_chinmo
2L	15984040	2L_15984040_SNP [dm3] 2L_15984040_SNP [dm6]	C	T	2.868e^-6	0.008	INTERGENIC
2L	17002489	2L_17002489_SNP [dm3] 2L_17002489_SNP [dm6]	T	G	2.870e^-6	0.008	INTERGENIC
3L	2031993	3L_2031993_DEL [dm3] 3L_2031993_DEL [dm6]	CGCC	C	2.915e^-6	0.008	INTERGENIC
3R	12279333	3R_12279333_SNP [dm3] 3R_16453611_SNP [dm6]	G	T	2.919e^-6	0.008	UTR_5_PRIME Pak3 UPSTREAM CG10405	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12279648	3R_12279648_SNP [dm3] 3R_16453926_SNP [dm6]	A	T	2.919e^-6	0.008	UPSTREAM CG10405 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12279649	3R_12279649_SNP [dm3] 3R_16453927_SNP [dm6]	A	T	2.919e^-6	0.008	UPSTREAM CG10405 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12290450	3R_12290450_SNP [dm3] 3R_16464728_SNP [dm6]	T	C	2.919e^-6	0.008	SYNONYMOUS_CODING CG42232	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	11537	3R_11537_SNP [dm3] 3R_4185815_SNP [dm6]	C	T	2.932e^-6	0.008	UTR_3_PRIME CG12581	transposable element FlyBase
2L	8474334	2L_8474334_SNP [dm3] 2L_8474334_SNP [dm6]	T	C	2.978e^-6	0.009	INTRON d
3R	11477016	3R_11477016_SNP [dm3] 3R_15651294_SNP [dm6]	G	A	2.999e^-6	0.009	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26872477	3R_26872477_SNP [dm3] 3R_31046755_SNP [dm6]	A	G	3.038e^-6	0.009	UTR_3_PRIME CanA1	TF binding site BDTNP1_TFBS_prd
2R	8845354	2R_8845354_SNP [dm3] 2R_12957849_SNP [dm6]	G	A	3.043e^-6	0.009	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15911201	3L_15911201_SNP [dm3] 3L_15918101_SNP [dm6]	C	T	3.045e^-6	0.009	INTRON sff
2L	16401862	2L_16401862_SNP [dm3] 2L_16401862_SNP [dm6]	T	G	3.046e^-6	0.009	INTRON CG5888
3L	2539210	3L_2539210_SNP [dm3] 3L_2539210_SNP [dm6]	G	A	3.051e^-6	0.009	INTRON Spn
3L	4013156	3L_4013156_DEL [dm3] 3L_4013156_DEL [dm6]	CT	C	3.097e^-6	0.009	INTERGENIC
3L	12338674	3L_12338674_SNP [dm3] 3L_12345574_SNP [dm6]	G	T	3.139e^-6	0.009	INTRON CrzR
2R	15096125	2R_15096125_SNP [dm3] 2R_19208620_SNP [dm6]	T	G	3.174e^-6	0.009	INTRON hppy
2R	10803242	2R_10803242_SNP [dm3] 2R_14915737_SNP [dm6]	T	C	3.179e^-6	0.009	INTRON CG10249
2L	3997210	2L_3997210_SNP [dm3] 2L_3997210_SNP [dm6]	C	T	3.183e^-6	0.009	INTERGENIC
3R	1262723	3R_1262723_SNP [dm3] 3R_5437001_SNP [dm6]	G	T	3.187e^-6	0.009	INTRON CG14669
2R	10803973	2R_10803973_SNP [dm3] 2R_14916468_SNP [dm6]	A	G	3.209e^-6	0.009	INTRON CG10249
2L	4165639	2L_4165639_SNP [dm3] 2L_4165639_SNP [dm6]	T	A	3.222e^-6	0.009	NON_SYNONYMOUS_CODING Or24a
2R	9138183	2R_9138183_SNP [dm3] 2R_13250678_SNP [dm6]	T	G	3.222e^-6	0.009	NON_SYNONYMOUS_CODING CG4712
2R	9138956	2R_9138956_SNP [dm3] 2R_13251451_SNP [dm6]	C	T	3.222e^-6	0.009	NON_SYNONYMOUS_CODING CG4712 SYNONYMOUS_CODING CG4712 DOWNSTREAM CG4714
2R	9138965	2R_9138965_SNP [dm3] 2R_13251460_SNP [dm6]	T	C	3.222e^-6	0.009	NON_SYNONYMOUS_CODING CG4712 SYNONYMOUS_CODING CG4712 DOWNSTREAM CG4714
2R	9139333	2R_9139333_SNP [dm3] 2R_13251828_SNP [dm6]	C	G	3.222e^-6	0.009	UPSTREAM CG4712 DOWNSTREAM CG4714 INTERGENIC	TF binding site mE1_TFBS_cad
3L	1085723	3L_1085723_SNP [dm3] 3L_1085723_SNP [dm6]	C	T	3.222e^-6	0.009	INTRON bab1
3L	2814480	3L_2814480_SNP [dm3] 3L_2814480_SNP [dm6]	A	G	3.222e^-6	0.009	INTRON CG43444
X	16928159	X_16928159_SNP [dm3] X_17034126_SNP [dm6]	A	C	3.222e^-6	0.009	INTRON CG45002
X	16928160	X_16928160_SNP [dm3] X_17034127_SNP [dm6]	G	A	3.222e^-6	0.009	INTRON CG45002
2L	3856510	2L_3856510_SNP [dm3] 2L_3856510_SNP [dm6]	C	T	3.225e^-6	0.009	EXON CR45450	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	6936725	2L_6936725_SNP [dm3] 2L_6936725_SNP [dm6]	C	T	3.258e^-6	0.009	INTRON CG18304	TF binding site mE1_TFBS_cad
2R	10803665	2R_10803665_SNP [dm3] 2R_14916160_SNP [dm6]	C	G	3.258e^-6	0.009	INTRON CG10249
3R	12496648	3R_12496648_SNP [dm3] 3R_16670926_SNP [dm6]	G	A	3.261e^-6	0.009	INTRON Ubx
2L	4203673	2L_4203673_SNP [dm3] 2L_4203673_SNP [dm6]	C	T	3.305e^-6	0.009	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
2L	6695911	2L_6695911_SNP [dm3] 2L_6695911_SNP [dm6]	G	A	3.323e^-6	0.009	INTRON Tsp
3L	2539519	3L_2539519_SNP [dm3] 3L_2539519_SNP [dm6]	T	G	3.336e^-6	0.009	INTRON Spn
2R	12588764	2R_12588764_DEL [dm3] 2R_16701259_DEL [dm6]	AA	A	3.374e^-6	0.009	INTRON CG30463
X	1401304	X_1401304_SNP [dm3] X_1507271_SNP [dm6]	A	T	3.385e^-6	0.009	INTRON inc & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	17067511	3R_17067511_SNP [dm3] 3R_21241789_SNP [dm6]	T	A	3.418e^-6	0.009	UPSTREAM CG5892 INTERGENIC	regulatory region REDfly_CRMs
X	19136900	X_19136900_DEL [dm3] X_19242867_DEL [dm6]	AGGT	A	3.432e^-6	0.009	UPSTREAM CG7889 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19136905	X_19136905_SNP [dm3] X_19242872_SNP [dm6]	T	A	3.432e^-6	0.009	UPSTREAM CG7889 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19136907	X_19136907_SNP [dm3] X_19242874_SNP [dm6]	C	G	3.432e^-6	0.009	UPSTREAM CG7889 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19136908	X_19136908_SNP [dm3] X_19242875_SNP [dm6]	C	T	3.432e^-6	0.009	UPSTREAM CG7889 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12481489	3L_12481489_SNP [dm3] 3L_12488389_SNP [dm6]	A	G	3.448e^-6	0.009	INTRON CG10660
2L	13883141	2L_13883141_SNP [dm3] 2L_13883141_SNP [dm6]	T	G	3.449e^-6	0.009	INTRON CenG1A
3L	9499823	3L_9499823_DEL [dm3] 3L_9506723_DEL [dm6]	TAATTTGAATTGTTAGATTT...	T	3.465e^-6	0.009	DOWNSTREAM CG3408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11320861	3L_11320861_SNP [dm3] 3L_11327761_SNP [dm6]	T	A	3.522e^-6	0.01	INTERGENIC
2L	5419081	2L_5419081_SNP [dm3] 2L_5419081_SNP [dm6]	A	G	3.536e^-6	0.01	INTERGENIC
3R	12279507	3R_12279507_SNP [dm3] 3R_16453785_SNP [dm6]	G	C	3.643e^-6	0.01	UTR_5_PRIME Pak3 UPSTREAM CG10405	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10682685	2L_10682685_SNP [dm3] 2L_10682685_SNP [dm6]	A	G	3.683e^-6	0.01	DOWNSTREAM CG17105 & 2 others INTERGENIC
2L	3387472	2L_3387472_SNP [dm3] 2L_3387472_SNP [dm6]	C	T	3.703e^-6	0.01	NON_SYNONYMOUS_CODING Sfp23F UPSTREAM CR45301 DOWNSTREAM CG42460
2L	4277785	2L_4277785_SNP [dm3] 2L_4277785_SNP [dm6]	T	A	3.710e^-6	0.01	UTR_3_PRIME Art2
3R	12496642	3R_12496642_SNP [dm3] 3R_16670920_SNP [dm6]	A	G	3.725e^-6	0.01	INTRON Ubx
2L	13726695	2L_13726695_SNP [dm3] 2L_13726695_SNP [dm6]	A	G	3.732e^-6	0.01	INTERGENIC
2L	13726774	2L_13726774_SNP [dm3] 2L_13726774_SNP [dm6]	C	A	3.732e^-6	0.01	INTERGENIC
2L	13726779	2L_13726779_SNP [dm3] 2L_13726779_SNP [dm6]	C	T	3.732e^-6	0.01	INTERGENIC
2L	13726781	2L_13726781_SNP [dm3] 2L_13726781_SNP [dm6]	G	A	3.732e^-6	0.01	INTERGENIC
3L	20666081	3L_20666081_SNP [dm3] 3L_20672981_SNP [dm6]	G	C	3.741e^-6	0.01	INTERGENIC
2L	20208988	2L_20208988_SNP [dm3] 2L_20208988_SNP [dm6]	C	A	3.742e^-6	0.01	INTERGENIC	transposable element FlyBase
2L	5377228	2L_5377228_SNP [dm3] 2L_5377228_SNP [dm6]	C	A	3.746e^-6	0.01	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5377293	2L_5377293_SNP [dm3] 2L_5377293_SNP [dm6]	G	T	3.746e^-6	0.01	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5377549	2L_5377549_SNP [dm3] 2L_5377549_SNP [dm6]	C	T	3.746e^-6	0.01	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5377596	2L_5377596_SNP [dm3] 2L_5377596_SNP [dm6]	A	C	3.746e^-6	0.01	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5378426	2L_5378426_SNP [dm3] 2L_5378426_SNP [dm6]	C	T	3.746e^-6	0.01	DOWNSTREAM CR42850 INTERGENIC
2R	11685037	2R_11685037_SNP [dm3] 2R_15797532_SNP [dm6]	A	T	3.746e^-6	0.01	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17440412	2R_17440412_SNP [dm3] 2R_21552907_SNP [dm6]	G	A	3.746e^-6	0.01	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18007912	2R_18007912_SNP [dm3] 2R_22120407_SNP [dm6]	C	G	3.746e^-6	0.01	INTRON Vrp1
2R	18397676	2R_18397676_SNP [dm3] 2R_22510171_SNP [dm6]	A	G	3.746e^-6	0.01	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	11526158	3L_11526158_SNP [dm3] 3L_11533058_SNP [dm6]	G	T	3.746e^-6	0.01	INTRON Mob2
3L	12065197	3L_12065197_SNP [dm3] 3L_12072097_SNP [dm6]	A	G	3.746e^-6	0.01	INTRON Sema-5c
3L	12065203	3L_12065203_SNP [dm3] 3L_12072103_SNP [dm6]	C	T	3.746e^-6	0.01	INTRON Sema-5c
3L	13681597	3L_13681597_SNP [dm3] 3L_13688497_SNP [dm6]	C	T	3.746e^-6	0.01	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17383310	3L_17383310_SNP [dm3] 3L_17390210_SNP [dm6]	T	C	3.746e^-6	0.01	INTERGENIC
3L	17384709	3L_17384709_SNP [dm3] 3L_17391609_SNP [dm6]	G	C	3.746e^-6	0.01	INTERGENIC
3L	17775884	3L_17775884_SNP [dm3] 3L_17782784_SNP [dm6]	A	T	3.746e^-6	0.01	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	672481	3L_672481_SNP [dm3] 3L_672481_SNP [dm6]	C	G	3.746e^-6	0.01	INTERGENIC	TF binding site mE1_TFBS_cad
X	12529216	X_12529216_SNP [dm3] X_12635183_SNP [dm6]	A	T	3.746e^-6	0.01	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
X	17580910	X_17580910_SNP [dm3] X_17686877_SNP [dm6]	G	A	3.746e^-6	0.01	INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21061768	X_21061768_SNP [dm3] X_21190741_SNP [dm6]	A	T	3.746e^-6	0.01	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21061777	X_21061777_DEL [dm3] X_21190750_DEL [dm6]	AA	G	3.746e^-6	0.01	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8199945	X_8199945_SNP [dm3] X_8305912_SNP [dm6]	T	C	3.746e^-6	0.01	INTRON nAChRalpha3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8200012	X_8200012_SNP [dm3] X_8305979_SNP [dm6]	C	T	3.746e^-6	0.01	INTRON nAChRalpha3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24237576	3R_24237576_SNP [dm3] 3R_28411854_SNP [dm6]	C	T	3.748e^-6	0.01	INTERGENIC
2L	20826234	2L_20826234_SNP [dm3] 2L_20826234_SNP [dm6]	C	A	3.800e^-6	0.01	INTRON CG9331	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sbb
2R	3930875	2R_3930875_SNP [dm3] 2R_8043370_SNP [dm6]	C	G	3.800e^-6	0.01	DOWNSTREAM Optix INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	11109480	3L_11109480_SNP [dm3] 3L_11116380_SNP [dm6]	T	C	3.800e^-6	0.01	INTRON fd68A
3L	11109495	3L_11109495_SNP [dm3] 3L_11116395_SNP [dm6]	A	G	3.800e^-6	0.01	INTRON fd68A
X	12719891	X_12719891_SNP [dm3] X_12825858_SNP [dm6]	A	T	3.800e^-6	0.01	INTRON Pde9
2L	10296912	2L_10296912_SNP [dm3] 2L_10296912_SNP [dm6]	T	G	3.812e^-6	0.01	UPSTREAM CR44968 INTRON CYLD
2L	10941460	2L_10941460_SNP [dm3] 2L_10941460_SNP [dm6]	T	G	3.812e^-6	0.01	DOWNSTREAM CR44492 INTRON dpr2
3L	11157042	3L_11157042_SNP [dm3] 3L_11163942_SNP [dm6]	G	A	3.814e^-6	0.01	UTR_3_PRIME CG32082 EXON CR43989
X	15999607	X_15999607_DEL [dm3] X_16105574_DEL [dm6]	ATACTGAAAACACGTCAATT...	A	3.833e^-6	0.01	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	4903620	3R_4903620_SNP [dm3] 3R_9077898_SNP [dm6]	T	G	3.838e^-6	0.01	INTRON pum
2L	1817174	2L_1817174_SNP [dm3] 2L_1817174_SNP [dm6]	A	C	3.846e^-6	0.01	INTERGENIC
2L	6936312	2L_6936312_SNP [dm3] 2L_6936312_SNP [dm6]	C	T	3.861e^-6	0.01	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6696809	2L_6696809_SNP [dm3] 2L_6696809_SNP [dm6]	C	A	3.921e^-6	0.01	INTRON Tsp
2L	1821510	2L_1821510_SNP [dm3] 2L_1821510_SNP [dm6]	C	T	3.932e^-6	0.01	SYNONYMOUS_CODING CG31933
2L	1821849	2L_1821849_SNP [dm3] 2L_1821849_SNP [dm6]	T	A	3.932e^-6	0.01	NON_SYNONYMOUS_CODING CG31933
X	2435218	X_2435218_SNP [dm3] X_2541185_SNP [dm6]	A	G	3.939e^-6	0.01	INTRON trol
2L	1821630	2L_1821630_SNP [dm3] 2L_1821630_SNP [dm6]	G	A	3.970e^-6	0.01	SYNONYMOUS_CODING CG31933
X	2308229	X_2308229_SNP [dm3] X_2414196_SNP [dm6]	A	G	3.971e^-6	0.01	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7901843	3L_7901843_SNP [dm3] 3L_7908743_SNP [dm6]	T	A	3.980e^-6	0.01	INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11182229	3L_11182229_SNP [dm3] 3L_11189129_SNP [dm6]	C	T	3.982e^-6	0.01	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
2L	20011837	2L_20011837_DEL [dm3] 2L_20011837_DEL [dm6]	ACCGTCGA	TG	4.009e^-6	0.01	INTRON CG43861
3R	13751427	3R_13751427_SNP [dm3] 3R_17925705_SNP [dm6]	C	G	4.020e^-6	0.01	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	11371722	2L_11371722_DEL [dm3] 2L_11371722_DEL [dm6]	ATGTTTTTGGCTCTCA...	A	4.033e^-6	0.01	INTRON salr	TF binding site mE1_TFBS_chinmo
3R	9590895	3R_9590895_SNP [dm3] 3R_13765173_SNP [dm6]	A	C	4.043e^-6	0.01	UPSTREAM CG9312 DOWNSTREAM CG34383 INTERGENIC
3R	26889305	3R_26889305_SNP [dm3] 3R_31063583_SNP [dm6]	T	C	4.072e^-6	0.01	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
X	6975987	X_6975987_SNP [dm3] X_7081954_SNP [dm6]	T	G	4.087e^-6	0.01	DOWNSTREAM Sxl INTRON Sxl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8304937	2L_8304937_SNP [dm3] 2L_8304937_SNP [dm6]	C	T	4.106e^-6	0.01	SYNONYMOUS_CODING Scgalpha UPSTREAM CG7840	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10378348	3L_10378348_SNP [dm3] 3L_10385248_SNP [dm6]	G	T	4.144e^-6	0.01	INTERGENIC
2L	11875233	2L_11875233_DEL [dm3] 2L_11875233_DEL [dm6]	GGGC	G	4.224e^-6	0.01	UPSTREAM Pde1c INTRON Pde1c
3L	11299527	3L_11299527_SNP [dm3] 3L_11306427_SNP [dm6]	G	A	4.236e^-6	0.01	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2349364	3L_2349364_INS [dm3] 3L_2349364_INS [dm6]	T	TTT	4.281e^-6	0.011	INTERGENIC
X	19136873	X_19136873_SNP [dm3] X_19242840_SNP [dm6]	G	A	4.309e^-6	0.011	UPSTREAM CG14196 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19136876	X_19136876_SNP [dm3] X_19242843_SNP [dm6]	G	T	4.309e^-6	0.011	UPSTREAM CG7889 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19136879	X_19136879_INS [dm3] X_19242846_INS [dm6]	T	TT	4.309e^-6	0.011	UPSTREAM CG7889 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14476503	2R_14476503_DEL [dm3] 2R_18588998_DEL [dm6]	TATAA	T	4.363e^-6	0.011	INTRON GEFmeso	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17806513	2R_17806513_SNP [dm3] 2R_21919008_SNP [dm6]	C	G	4.363e^-6	0.011	INTRON Fili
3L	18648657	3L_18648657_SNP [dm3] 3L_18655557_SNP [dm6]	G	T	4.363e^-6	0.011	INTRON MYPT-75D
3L	18648666	3L_18648666_SNP [dm3] 3L_18655566_SNP [dm6]	C	T	4.363e^-6	0.011	INTRON MYPT-75D
3L	19429202	3L_19429202_SNP [dm3] 3L_19436102_SNP [dm6]	A	T	4.363e^-6	0.011	INTERGENIC
3L	8585686	3L_8585686_SNP [dm3] 3L_8592586_SNP [dm6]	G	C	4.363e^-6	0.011	NON_SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7770652	3L_7770652_SNP [dm3] 3L_7777552_SNP [dm6]	G	T	4.379e^-6	0.011	UTR_3_PRIME CG32369 DOWNSTREAM CG32369	regulatory region REDfly_CRMs
2L	3398287	2L_3398287_SNP [dm3] 2L_3398287_SNP [dm6]	G	A	4.401e^-6	0.011	SYNONYMOUS_CODING CG34175 UPSTREAM CR44792
2R	12494890	2R_12494890_SNP [dm3] 2R_16607385_SNP [dm6]	A	T	4.409e^-6	0.011	UPSTREAM CG5065 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	9117832	2L_9117832_SNP [dm3] 2L_9117832_SNP [dm6]	G	A	4.420e^-6	0.011	INTERGENIC
3L	17376278	3L_17376278_SNP [dm3] 3L_17383178_SNP [dm6]	A	T	4.420e^-6	0.011	UPSTREAM CG13728 DOWNSTREAM CG13731 INTERGENIC
2R	17440350	2R_17440350_SNP [dm3] 2R_21552845_SNP [dm6]	C	T	4.466e^-6	0.011	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19390322	2R_19390322_SNP [dm3] 2R_23502799_SNP [dm6]	T	G	4.467e^-6	0.011	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_inv
2L	11128457	2L_11128457_SNP [dm3] 2L_11128457_SNP [dm6]	G	A	4.469e^-6	0.011	SYNONYMOUS_CODING Nup160 DOWNSTREAM RfC38	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	5724276	3L_5724276_SNP [dm3] 3L_5731176_SNP [dm6]	G	A	4.469e^-6	0.011	INTRON sif
2R	3797806	2R_3797806_SNP [dm3] 2R_7910301_SNP [dm6]	G	T	4.470e^-6	0.011	INTRON CG30377
2R	3798447	2R_3798447_SNP [dm3] 2R_7910942_SNP [dm6]	T	G	4.470e^-6	0.011	INTRON CG30377
2R	3798448	2R_3798448_SNP [dm3] 2R_7910943_SNP [dm6]	A	T	4.470e^-6	0.011	INTRON CG30377
X	8482658	X_8482658_SNP [dm3] X_8588625_SNP [dm6]	A	T	4.470e^-6	0.011	UPSTREAM CG12081 DOWNSTREAM CG12065 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	15194502	2L_15194502_SNP [dm3] 2L_15194502_SNP [dm6]	T	C	4.475e^-6	0.011	INTRON CG4168
3L	12066593	3L_12066593_SNP [dm3] 3L_12073493_SNP [dm6]	C	T	4.487e^-6	0.011	INTRON Sema-5c
X	12529467	X_12529467_SNP [dm3] X_12635434_SNP [dm6]	G	T	4.487e^-6	0.011	UPSTREAM mir-970 INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17384765	3L_17384765_SNP [dm3] 3L_17391665_SNP [dm6]	T	G	4.497e^-6	0.011	INTERGENIC
2L	4171014	2L_4171014_SNP [dm3] 2L_4171014_SNP [dm6]	A	T	4.501e^-6	0.011	INTERGENIC
2R	17876115	2R_17876115_SNP [dm3] 2R_21988610_SNP [dm6]	G	A	4.501e^-6	0.011	SYNONYMOUS_CODING CG34370	TF binding site mE1_TFBS_cad
3L	12481466	3L_12481466_SNP [dm3] 3L_12488366_SNP [dm6]	A	G	4.505e^-6	0.011	INTRON CG10660
3R	13971082	3R_13971082_SNP [dm3] 3R_18145360_SNP [dm6]	G	A	4.517e^-6	0.011	INTERGENIC
3L	14367618	3L_14367618_SNP [dm3] 3L_14374518_SNP [dm6]	C	T	4.527e^-6	0.011	INTERGENIC
2L	4277786	2L_4277786_SNP [dm3] 2L_4277786_SNP [dm6]	G	A	4.585e^-6	0.011	UTR_3_PRIME Art2
3L	1526943	3L_1526943_SNP [dm3] 3L_1526943_SNP [dm6]	C	G	4.587e^-6	0.011	INTRON CG12090	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1526968	3L_1526968_SNP [dm3] 3L_1526968_SNP [dm6]	T	A	4.587e^-6	0.011	INTRON CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	7742898	3L_7742898_SNP [dm3] 3L_7749798_SNP [dm6]	C	G	4.587e^-6	0.011	UTR_3_PRIME CG13685 INTRON CG32373
2L	9823788	2L_9823788_SNP [dm3] 2L_9823788_SNP [dm6]	T	G	4.612e^-6	0.011	INTRON nAChRalpha6
3L	3908569	3L_3908569_SNP [dm3] 3L_3908569_SNP [dm6]	T	A	4.620e^-6	0.011	DOWNSTREAM ida INTRON mge
2L	3803063	2L_3803063_SNP [dm3] 2L_3803063_SNP [dm6]	G	T	4.636e^-6	0.011	UPSTREAM Reph DOWNSTREAM CG3921 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3803093	2L_3803093_SNP [dm3] 2L_3803093_SNP [dm6]	T	C	4.636e^-6	0.011	UPSTREAM Reph DOWNSTREAM CG3921 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	4529063	3L_4529063_SNP [dm3] 3L_4529063_SNP [dm6]	A	G	4.712e^-6	0.011	INTRON Tie
2L	15651681	2L_15651681_SNP [dm3] 2L_15651681_SNP [dm6]	G	A	4.736e^-6	0.011	SYNONYMOUS_CODING CG4587
3L	12471366	3L_12471366_SNP [dm3] 3L_12478266_SNP [dm6]	C	T	4.736e^-6	0.011	INTRON CG10663
3L	3284789	3L_3284789_SNP [dm3] 3L_3284789_SNP [dm6]	A	G	4.736e^-6	0.011	INTRON CG12017
3L	3284795	3L_3284795_SNP [dm3] 3L_3284795_SNP [dm6]	G	C	4.736e^-6	0.011	INTRON CG12017
3L	3284813	3L_3284813_SNP [dm3] 3L_3284813_SNP [dm6]	C	T	4.736e^-6	0.011	INTRON CG12017
3L	9201364	3L_9201364_SNP [dm3] 3L_9208264_SNP [dm6]	T	G	4.736e^-6	0.011	UTR_5_PRIME Slc45-1 UPSTREAM Slc45-1
X	17150467	X_17150467_SNP [dm3] X_17256434_SNP [dm6]	T	C	4.736e^-6	0.011	INTRON f
2R	12528235	2R_12528235_SNP [dm3] 2R_16640730_SNP [dm6]	T	A	4.753e^-6	0.011	UPSTREAM Alk & 1 other INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11182451	3L_11182451_SNP [dm3] 3L_11189351_SNP [dm6]	A	T	4.770e^-6	0.011	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
3L	4013154	3L_4013154_SNP [dm3] 3L_4013154_SNP [dm6]	C	T	4.807e^-6	0.011	INTERGENIC
2L	19959138	2L_19959138_SNP [dm3] 2L_19959138_SNP [dm6]	G	T	4.838e^-6	0.011	UTR_5_PRIME CoIV DOWNSTREAM sick & 1 other INTRON CoIV	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4837988	2L_4837988_SNP [dm3] 2L_4837988_SNP [dm6]	G	C	4.874e^-6	0.011	UTR_5_PRIME tank UPSTREAM CG12194	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_zfh1
2L	22904177	2L_22904177_SNP [dm3] 2L_23011445_SNP [dm6]	A	T	4.884e^-6	0.011	INTRON Cht3
2L	5528580	2L_5528580_SNP [dm3] 2L_5528580_SNP [dm6]	C	T	4.899e^-6	0.011	SYNONYMOUS_CODING CG31915 DOWNSTREAM CG31648 INTRON Cap-D3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1660554	3L_1660554_DEL [dm3] 3L_1660554_DEL [dm6]	TTGGGT	T	4.920e^-6	0.011	DOWNSTREAM CG7971 INTRON CG7971	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13118560	2L_13118560_SNP [dm3] 2L_13118560_SNP [dm6]	T	C	4.931e^-6	0.011	UPSTREAM CG43050 DOWNSTREAM CR44198 INTERGENIC
X	1405749	X_1405749_SNP [dm3] X_1511716_SNP [dm6]	T	C	4.931e^-6	0.011	DOWNSTREAM CG14795 INTRON inc	TF binding site mE1_TFBS_chinmo
X	1407234	X_1407234_SNP [dm3] X_1513201_SNP [dm6]	C	T	4.931e^-6	0.011	UTR_5_PRIME inc UPSTREAM CG14795	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
2R	7286639	2R_7286639_SNP [dm3] 2R_11399134_SNP [dm6]	G	A	4.982e^-6	0.011	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17562693	3L_17562693_SNP [dm3] 3L_17569593_SNP [dm6]	A	T	4.982e^-6	0.011	INTRON Eip74EF
3L	9384717	3L_9384717_SNP [dm3] 3L_9391617_SNP [dm6]	G	T	4.982e^-6	0.011	INTRON CG4080	TF binding site BDTNP1_TFBS_dl
2L	14003924	2L_14003924_SNP [dm3] 2L_14003924_SNP [dm6]	T	G	5.063e^-6	0.012	INTERGENIC
X	18940033	X_18940033_SNP [dm3] X_19046000_SNP [dm6]	T	C	5.070e^-6	0.012	INTERGENIC
X	3722992	X_3722992_SNP [dm3] X_3828959_SNP [dm6]	G	A	5.144e^-6	0.012	SYNONYMOUS_CODING CG2901 INTRON ec
X	8718899	X_8718899_SNP [dm3] X_8824866_SNP [dm6]	T	A	5.149e^-6	0.012	INTERGENIC
2R	17293320	2R_17293320_SNP [dm3] 2R_21405815_SNP [dm6]	T	G	5.149e^-6	0.012	INTRON Sdc
2R	17293322	2R_17293322_SNP [dm3] 2R_21405817_SNP [dm6]	C	T	5.149e^-6	0.012	INTRON Sdc
2R	17293326	2R_17293326_SNP [dm3] 2R_21405821_SNP [dm6]	T	A	5.149e^-6	0.012	INTRON Sdc
2R	17293327	2R_17293327_SNP [dm3] 2R_21405822_SNP [dm6]	T	G	5.149e^-6	0.012	INTRON Sdc
2R	17293330	2R_17293330_SNP [dm3] 2R_21405825_SNP [dm6]	A	C	5.149e^-6	0.012	INTRON Sdc
3L	12472471	3L_12472471_SNP [dm3] 3L_12479371_SNP [dm6]	T	C	5.184e^-6	0.012	INTRON CG10663
X	17973085	X_17973085_SNP [dm3] X_18079052_SNP [dm6]	T	A	5.195e^-6	0.012	UTR_3_PRIME CG7536 DOWNSTREAM Dhc16F
2R	19604749	2R_19604749_SNP [dm3] 2R_23717226_SNP [dm6]	T	G	5.204e^-6	0.012	INTRON Sesn
3L	20647639	3L_20647639_SNP [dm3] 3L_20654539_SNP [dm6]	T	C	5.206e^-6	0.012	DOWNSTREAM CR44685 INTERGENIC
X	16603724	X_16603724_INS [dm3] X_16709691_INS [dm6]	A	AA	5.206e^-6	0.012	INTRON CG4678	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16603727	X_16603727_SNP [dm3] X_16709694_SNP [dm6]	C	A	5.206e^-6	0.012	INTRON CG4678	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16603730	X_16603730_INS [dm3] X_16709697_INS [dm6]	T	TATTTATTTACCATAGTGG...	5.206e^-6	0.012	INTRON CG4678	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16603732	X_16603732_SNP [dm3] X_16709699_SNP [dm6]	G	T	5.206e^-6	0.012	INTRON CG4678	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3851026	2R_3851026_SNP [dm3] 2R_7963521_SNP [dm6]	A	G	5.210e^-6	0.012	SYNONYMOUS_CODING nito	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19136898	X_19136898_SNP [dm3] X_19242865_SNP [dm6]	T	A	5.243e^-6	0.012	UPSTREAM CG7889 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11829875	2R_11829875_SNP [dm3] 2R_15942370_SNP [dm6]	T	C	5.254e^-6	0.012	UPSTREAM CG8299 & 1 other INTERGENIC
2R	19346685	2R_19346685_SNP [dm3] 2R_23459162_SNP [dm6]	T	A	5.268e^-6	0.012	UPSTREAM skpF INTRON CG43795
2R	5106574	2R_5106574_SNP [dm3] 2R_9219069_SNP [dm6]	G	C	5.274e^-6	0.012	INTERGENIC
2L	644507	2L_644507_SNP [dm3] 2L_644507_SNP [dm6]	T	C	5.282e^-6	0.012	SYNONYMOUS_CODING ds
2L	645227	2L_645227_SNP [dm3] 2L_645227_SNP [dm6]	G	C	5.282e^-6	0.012	SYNONYMOUS_CODING ds
2L	645233	2L_645233_SNP [dm3] 2L_645233_SNP [dm6]	T	A	5.282e^-6	0.012	SYNONYMOUS_CODING ds
3R	26871052	3R_26871052_DEL [dm3] 3R_31045330_DEL [dm6]	CAATCC	C	5.294e^-6	0.012	UPSTREAM CG33920 INTRON CanA1
2L	1147512	2L_1147512_SNP [dm3] 2L_1147512_SNP [dm6]	C	T	5.296e^-6	0.012	UPSTREAM CG4749 DOWNSTREAM MFS3 INTERGENIC
2L	1147533	2L_1147533_SNP [dm3] 2L_1147533_SNP [dm6]	C	T	5.296e^-6	0.012	UPSTREAM CG4749 DOWNSTREAM MFS3 INTERGENIC
2L	1149384	2L_1149384_SNP [dm3] 2L_1149384_SNP [dm6]	A	G	5.296e^-6	0.012	UTR_3_PRIME CG4749 DOWNSTREAM Tfb4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17601801	2L_17601801_SNP [dm3] 2L_17601801_SNP [dm6]	C	A	5.308e^-6	0.012	SYNONYMOUS_CODING Sytalpha
2L	6419612	2L_6419612_SNP [dm3] 2L_6419612_SNP [dm6]	G	A	5.308e^-6	0.012	SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9117999	2L_9117999_SNP [dm3] 2L_9117999_SNP [dm6]	C	T	5.309e^-6	0.012	INTERGENIC
2L	9129746	2L_9129746_SNP [dm3] 2L_9129746_SNP [dm6]	A	G	5.329e^-6	0.012	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12479330	3L_12479330_SNP [dm3] 3L_12486230_SNP [dm6]	C	G	5.346e^-6	0.012	SYNONYMOUS_CODING CG33725 DOWNSTREAM CG10660	TF binding site BDTNP1_TFBS_twi
3L	12479375	3L_12479375_SNP [dm3] 3L_12486275_SNP [dm6]	T	G	5.346e^-6	0.012	SYNONYMOUS_CODING CG33725 DOWNSTREAM CG10660	TF binding site BDTNP1_TFBS_twi
3L	21834596	3L_21834596_SNP [dm3] 3L_21841496_SNP [dm6]	G	T	5.362e^-6	0.012	UPSTREAM P5CDh1 DOWNSTREAM CG14563 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_Trl
3L	18643803	3L_18643803_SNP [dm3] 3L_18650703_SNP [dm6]	C	T	5.365e^-6	0.012	INTRON MYPT-75D
X	14791911	X_14791911_SNP [dm3] X_14897878_SNP [dm6]	A	C	5.379e^-6	0.012	UPSTREAM CG9514 INTRON Flo2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13513370	2R_13513370_SNP [dm3] 2R_17625865_SNP [dm6]	A	T	5.401e^-6	0.012	INTRON CG10936
2R	13513376	2R_13513376_SNP [dm3] 2R_17625871_SNP [dm6]	C	T	5.401e^-6	0.012	INTRON CG10936
2R	18052463	2R_18052463_SNP [dm3] 2R_22164958_SNP [dm6]	C	T	5.401e^-6	0.012	SYNONYMOUS_CODING a UPSTREAM CG34206
2R	19168818	2R_19168818_SNP [dm3] 2R_23281295_SNP [dm6]	G	C	5.402e^-6	0.012	INTERGENIC	TF binding site mE1_TFBS_inv
2R	19168836	2R_19168836_SNP [dm3] 2R_23281313_SNP [dm6]	G	C	5.402e^-6	0.012	INTERGENIC	TF binding site mE1_TFBS_inv
3L	14294857	3L_14294857_SNP [dm3] 3L_14301757_SNP [dm6]	A	T	5.402e^-6	0.012	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12413430	3L_12413430_SNP [dm3] 3L_12420330_SNP [dm6]	A	T	5.405e^-6	0.012	INTERGENIC
3L	12417461	3L_12417461_SNP [dm3] 3L_12424361_SNP [dm6]	A	T	5.405e^-6	0.012	INTRON toe
3L	12417468	3L_12417468_SNP [dm3] 3L_12424368_SNP [dm6]	A	T	5.405e^-6	0.012	INTRON toe	TF binding site mE1_TFBS_cad
2L	7252058	2L_7252058_SNP [dm3] 2L_7252058_SNP [dm6]	T	C	5.430e^-6	0.012	SYNONYMOUS_CODING CG13786	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	1290760	2L_1290760_SNP [dm3] 2L_1290760_SNP [dm6]	C	A	5.446e^-6	0.012	INTRON robo3
2R	3922785	2R_3922785_SNP [dm3] 2R_8035280_SNP [dm6]	A	G	5.496e^-6	0.012	INTRON Optix
3R	13007729	3R_13007729_SNP [dm3] 3R_17182007_SNP [dm6]	C	T	5.520e^-6	0.012	INTRON Mur89F
3L	12787424	3L_12787424_SNP [dm3] 3L_12794324_SNP [dm6]	C	A	5.536e^-6	0.012	INTRON Atg1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4965029	3L_4965029_SNP [dm3] 3L_4965029_SNP [dm6]	A	C	5.573e^-6	0.012	INTRON Con
3L	4965032	3L_4965032_DEL [dm3] 3L_4965032_DEL [dm6]	AAACCCCTTTCCA...	A	5.573e^-6	0.012	INTRON Con
3L	4965046	3L_4965046_SNP [dm3] 3L_4965046_SNP [dm6]	C	T	5.573e^-6	0.012	INTRON Con
2L	6693937	2L_6693937_SNP [dm3] 2L_6693937_SNP [dm6]	T	A	5.587e^-6	0.012	INTRON Tsp
2R	15543920	2R_15543920_SNP [dm3] 2R_19656415_SNP [dm6]	C	T	5.601e^-6	0.012	EXON CR44214
2L	19930670	2L_19930670_SNP [dm3] 2L_19930670_SNP [dm6]	C	T	5.607e^-6	0.012	INTRON sick
2R	18186161	2R_18186161_SNP [dm3] 2R_22298656_SNP [dm6]	C	T	5.607e^-6	0.012	UTR_3_PRIME wdp	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7375987	2R_7375987_SNP [dm3] 2R_11488482_SNP [dm6]	A	G	5.607e^-6	0.012	INTRON inv
2L	17008109	2L_17008109_SNP [dm3] 2L_17008109_SNP [dm6]	A	T	5.610e^-6	0.012	INTERGENIC
2R	3034575	2R_3034575_SNP [dm3] 2R_7147070_SNP [dm6]	T	G	5.610e^-6	0.012	UPSTREAM Spn43Aa INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	11096005	3L_11096005_SNP [dm3] 3L_11102905_SNP [dm6]	C	G	5.650e^-6	0.012	SYNONYMOUS_CODING Elo68alpha DOWNSTREAM CG32071	TF binding site mE1_TFBS_chinmo
3R	13416386	3R_13416386_DEL [dm3] 3R_17590664_DEL [dm6]	GCCTCTGCCCG...	G	5.697e^-6	0.012	INTERGENIC
2L	1253628	2L_1253628_SNP [dm3] 2L_1253628_SNP [dm6]	C	T	5.716e^-6	0.012	INTERGENIC
2L	17609106	2L_17609106_SNP [dm3] 2L_17609106_SNP [dm6]	T	A	5.716e^-6	0.012	INTERGENIC
2R	6025600	2R_6025600_SNP [dm3] 2R_10138095_SNP [dm6]	G	T	5.717e^-6	0.012	SYNONYMOUS_CODING CG12917 DOWNSTREAM gem
2L	9101426	2L_9101426_SNP [dm3] 2L_9101426_SNP [dm6]	C	A	5.731e^-6	0.012	INTERGENIC
2L	7298952	2L_7298952_DEL [dm3] 2L_7298952_DEL [dm6]	CATAGTTTTATCAGATTT...	C	5.749e^-6	0.012	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	20452151	3L_20452151_SNP [dm3] 3L_20459051_SNP [dm6]	C	T	5.765e^-6	0.012	SYNONYMOUS_CODING CG5195	TF binding site mE1_TFBS_sens
2R	15057082	2R_15057082_SNP [dm3] 2R_19169577_SNP [dm6]	C	T	5.775e^-6	0.012	UPSTREAM CG10737 INTRON CG10737	TF binding site mE1_TFBS_Trl
2L	4075871	2L_4075871_SNP [dm3] 2L_4075871_SNP [dm6]	A	G	5.777e^-6	0.012	INTRON ed EXON CR44984
2R	1810632	2R_1810632_SNP [dm3] 2R_5923127_SNP [dm6]	C	T	5.786e^-6	0.012	INTRON CG43366
3L	17541380	3L_17541380_SNP [dm3] 3L_17548280_SNP [dm6]	C	T	5.786e^-6	0.012	NON_SYNONYMOUS_CODING Jon74E
X	21989021	X_21989021_SNP [dm3] X_22587185_SNP [dm6]	A	C	5.787e^-6	0.012	INTRON Cda4	TF binding site BDTNP1_TFBS_dl
3L	12218775	3L_12218775_SNP [dm3] 3L_12225675_SNP [dm6]	C	A	5.801e^-6	0.012	INTRON app
3L	14125074	3L_14125074_SNP [dm3] 3L_14131974_SNP [dm6]	G	A	5.820e^-6	0.012	UPSTREAM Sox21b INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9917378	3L_9917378_SNP [dm3] 3L_9924278_SNP [dm6]	T	G	5.824e^-6	0.012	INTRON CG34356
X	1411792	X_1411792_SNP [dm3] X_1517759_SNP [dm6]	C	T	5.828e^-6	0.012	DOWNSTREAM inc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1411822	X_1411822_SNP [dm3] X_1517789_SNP [dm6]	T	C	5.828e^-6	0.012	DOWNSTREAM inc INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1411829	X_1411829_SNP [dm3] X_1517796_SNP [dm6]	G	A	5.828e^-6	0.012	DOWNSTREAM inc INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10845263	3L_10845263_SNP [dm3] 3L_10852163_SNP [dm6]	A	C	5.831e^-6	0.012	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11233319	3L_11233319_SNP [dm3] 3L_11240219_SNP [dm6]	C	G	5.833e^-6	0.012	INTERGENIC
3L	1592580	3L_1592580_SNP [dm3] 3L_1592580_SNP [dm6]	T	C	5.842e^-6	0.012	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_Trl
X	1447921	X_1447921_SNP [dm3] X_1553888_SNP [dm6]	G	A	5.854e^-6	0.012	NON_SYNONYMOUS_CODING Mur2B INTRON Mur2B	TF binding site mE1_TFBS_chinmo
X	1454355	X_1454355_DEL [dm3] X_1560322_DEL [dm6]	TT	T	5.854e^-6	0.012	INTRON Mur2B
X	1458077	X_1458077_SNP [dm3] X_1564044_SNP [dm6]	C	A	5.854e^-6	0.012	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
X	1455623	X_1455623_SNP [dm3] X_1561590_SNP [dm6]	T	A	5.856e^-6	0.012	INTRON Mur2B
2R	13779141	2R_13779141_SNP [dm3] 2R_17891636_SNP [dm6]	C	T	5.877e^-6	0.012	INTRON Elk
3R	24103813	3R_24103813_SNP [dm3] 3R_28278091_SNP [dm6]	G	T	5.882e^-6	0.012	INTERGENIC
2L	917399	2L_917399_SNP [dm3] 2L_917399_SNP [dm6]	C	T	5.914e^-6	0.012	INTRON GluRIIC
X	16704117	X_16704117_SNP [dm3] X_16810084_SNP [dm6]	T	C	5.914e^-6	0.012	UPSTREAM CR44053 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1788359	2L_1788359_SNP [dm3] 2L_1788359_SNP [dm6]	A	C	5.926e^-6	0.012	DOWNSTREAM Gr22d INTERGENIC
3L	8599854	3L_8599854_SNP [dm3] 3L_8606754_SNP [dm6]	C	A	5.932e^-6	0.012	INTRON CG6282
2L	11397004	2L_11397004_DEL [dm3] 2L_11397004_DEL [dm6]	CTGGTCGCCC	C	5.969e^-6	0.012	INTERGENIC	regulatory region REDfly_CRMs
2L	15979274	2L_15979274_SNP [dm3] 2L_15979274_SNP [dm6]	A	G	5.971e^-6	0.012	UPSTREAM CG10839 INTERGENIC
2L	1204821	2L_1204821_SNP [dm3] 2L_1204821_SNP [dm6]	A	T	6.015e^-6	0.012	NON_SYNONYMOUS_CODING CG14342
3R	9869131	3R_9869131_SNP [dm3] 3R_14043409_SNP [dm6]	G	T	6.075e^-6	0.012	INTERGENIC
3L	13858264	3L_13858264_SNP [dm3] 3L_13865164_SNP [dm6]	T	A	6.093e^-6	0.012	INTRON CG8745	TF binding site mE1_TFBS_inv
3L	16223241	3L_16223241_SNP [dm3] 3L_16230141_SNP [dm6]	C	T	6.093e^-6	0.012	SYNONYMOUS_CODING CG5027 DOWNSTREAM PDCD-5	TF binding site mE1_TFBS_sens
3L	16262853	3L_16262853_SNP [dm3] 3L_16269753_SNP [dm6]	T	C	6.144e^-6	0.013	SYNONYMOUS_CODING CG13068 DOWNSTREAM CG34248
3R	4455199	3R_4455199_SNP [dm3] 3R_8629477_SNP [dm6]	T	G	6.151e^-6	0.013	UTR_3_PRIME 5-HT2B
3R	14790369	3R_14790369_SNP [dm3] 3R_18964647_SNP [dm6]	C	T	6.164e^-6	0.013	INTRON CG42613 & 1 other
2R	15283733	2R_15283733_SNP [dm3] 2R_19396228_SNP [dm6]	C	G	6.213e^-6	0.013	UTR_3_PRIME cer UPSTREAM SdhA DOWNSTREAM hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	13211122	2R_13211122_SNP [dm3] 2R_17323617_SNP [dm6]	A	T	6.232e^-6	0.013	INTRON mbl
3L	4706323	3L_4706323_SNP [dm3] 3L_4706323_SNP [dm6]	C	A	6.245e^-6	0.013	INTRON RhoGEF64C
3L	4706324	3L_4706324_SNP [dm3] 3L_4706324_SNP [dm6]	T	C	6.245e^-6	0.013	INTRON RhoGEF64C
2L	12907745	2L_12907745_SNP [dm3] 2L_12907745_SNP [dm6]	G	T	6.248e^-6	0.013	INTERGENIC
3L	2975214	3L_2975214_SNP [dm3] 3L_2975214_SNP [dm6]	A	T	6.252e^-6	0.013	DOWNSTREAM CR44530 INTERGENIC
3L	2977654	3L_2977654_SNP [dm3] 3L_2977654_SNP [dm6]	T	G	6.252e^-6	0.013	INTERGENIC
3R	7221147	3R_7221147_SNP [dm3] 3R_11395425_SNP [dm6]	A	G	6.270e^-6	0.013	UTR_3_PRIME pros DOWNSTREAM pros
2L	1153447	2L_1153447_SNP [dm3] 2L_1153447_SNP [dm6]	G	A	6.312e^-6	0.013	NON_SYNONYMOUS_CODING capt	TF binding site mE1_TFBS_chinmo
2R	5106573	2R_5106573_SNP [dm3] 2R_9219068_SNP [dm6]	G	T	6.336e^-6	0.013	INTERGENIC
2R	5107223	2R_5107223_SNP [dm3] 2R_9219718_SNP [dm6]	G	A	6.336e^-6	0.013	INTERGENIC
2R	5107230	2R_5107230_DEL [dm3] 2R_9219725_DEL [dm6]	AG	A	6.336e^-6	0.013	INTERGENIC
2L	1145316	2L_1145316_SNP [dm3] 2L_1145316_SNP [dm6]	T	G	6.349e^-6	0.013	INTRON MFS3	TF binding site mE1_TFBS_cad
2L	12923181	2L_12923181_SNP [dm3] 2L_12923181_SNP [dm6]	G	C	6.360e^-6	0.013	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
2L	12923184	2L_12923184_SNP [dm3] 2L_12923184_SNP [dm6]	G	T	6.360e^-6	0.013	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
2L	12923201	2L_12923201_SNP [dm3] 2L_12923201_SNP [dm6]	T	C	6.360e^-6	0.013	INTRON ACXA
2L	14593489	2L_14593489_SNP [dm3] 2L_14593489_SNP [dm6]	G	A	6.360e^-6	0.013	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14604117	2R_14604117_SNP [dm3] 2R_18716612_SNP [dm6]	G	A	6.407e^-6	0.013	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	3842535	2R_3842535_SNP [dm3] 2R_7955030_SNP [dm6]	C	T	6.442e^-6	0.013	UPSTREAM CG14764 INTRON CG14764
3L	4013531	3L_4013531_SNP [dm3] 3L_4013531_SNP [dm6]	T	G	6.469e^-6	0.013	INTERGENIC
2L	1828563	2L_1828563_SNP [dm3] 2L_1828563_SNP [dm6]	A	T	6.549e^-6	0.013	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13749990	X_13749990_SNP [dm3] X_13855957_SNP [dm6]	T	C	6.566e^-6	0.013	NON_SYNONYMOUS_CODING mamo	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12861298	2R_12861298_SNP [dm3] 2R_16973793_SNP [dm6]	C	A	6.595e^-6	0.013	UPSTREAM Cbp53E INTERGENIC
3R	1055632	3R_1055632_DEL [dm3] 3R_5229910_DEL [dm6]	CACAAATCTTAAAGC...	A	6.614e^-6	0.013	INTRON Kat60
3L	12417526	3L_12417526_SNP [dm3] 3L_12424426_SNP [dm6]	A	C	6.623e^-6	0.013	INTRON toe	TF binding site mE1_TFBS_cad
2R	7347843	2R_7347843_SNP [dm3] 2R_11460338_SNP [dm6]	G	T	6.632e^-6	0.013	INTRON E_Pc_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	7347852	2R_7347852_INS [dm3] 2R_11460347_INS [dm6]	T	TGTGCTT	6.632e^-6	0.013	INTRON E_Pc_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	7347871	2R_7347871_SNP [dm3] 2R_11460366_SNP [dm6]	A	T	6.632e^-6	0.013	INTRON E_Pc_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	7347911	2R_7347911_SNP [dm3] 2R_11460406_SNP [dm6]	A	T	6.632e^-6	0.013	INTRON E_Pc_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	7347913	2R_7347913_SNP [dm3] 2R_11460408_SNP [dm6]	C	T	6.632e^-6	0.013	INTRON E_Pc_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	7347917	2R_7347917_SNP [dm3] 2R_11460412_SNP [dm6]	C	T	6.632e^-6	0.013	INTRON E_Pc_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	7347923	2R_7347923_SNP [dm3] 2R_11460418_SNP [dm6]	T	C	6.632e^-6	0.013	INTRON E_Pc_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	15415563	2L_15415563_SNP [dm3] 2L_15415563_SNP [dm6]	A	T	6.643e^-6	0.013	INTERGENIC
3L	13082500	3L_13082500_SNP [dm3] 3L_13089400_SNP [dm6]	A	G	6.651e^-6	0.013	SYNONYMOUS_CODING CG11251 DOWNSTREAM CR45749	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11018894	2L_11018894_SNP [dm3] 2L_11018894_SNP [dm6]	T	A	6.728e^-6	0.013	DOWNSTREAM CG14913 INTRON Samuel
2L	11018903	2L_11018903_SNP [dm3] 2L_11018903_SNP [dm6]	G	A	6.728e^-6	0.013	DOWNSTREAM CG14913 INTRON Samuel
2L	11018908	2L_11018908_INS [dm3] 2L_11018908_INS [dm6]	T	TGTCAAAACACATTTA...	6.728e^-6	0.013	DOWNSTREAM CG14913 INTRON Samuel
2L	11019055	2L_11019055_SNP [dm3] 2L_11019055_SNP [dm6]	G	A	6.728e^-6	0.013	DOWNSTREAM CG14913 INTRON Samuel
3L	19385361	3L_19385361_SNP [dm3] 3L_19392261_SNP [dm6]	A	T	6.728e^-6	0.013	INTRON CG32206
2L	15522115	2L_15522115_SNP [dm3] 2L_15522115_SNP [dm6]	C	A	6.737e^-6	0.013	EXON CR43761	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18905925	2L_18905925_SNP [dm3] 2L_18905925_SNP [dm6]	G	T	6.759e^-6	0.013	UPSTREAM CR44738 INTERGENIC
3R	7815107	3R_7815107_SNP [dm3] 3R_11989385_SNP [dm6]	G	C	6.778e^-6	0.013	NON_SYNONYMOUS_CODING mfas INTRON mfas
3L	16169599	3L_16169599_SNP [dm3] 3L_16176499_SNP [dm6]	A	T	6.828e^-6	0.013	UPSTREAM CR45754 DOWNSTREAM CR45755 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3824500	2R_3824500_SNP [dm3] 2R_7936995_SNP [dm6]	T	A	6.838e^-6	0.013	SYNONYMOUS_CODING CG8728 DOWNSTREAM drosha	TF binding site mE1_TFBS_chinmo
3R	6857618	3R_6857618_SNP [dm3] 3R_11031896_SNP [dm6]	G	T	6.852e^-6	0.013	INTRON CG34114
2R	8540060	2R_8540060_SNP [dm3] 2R_12652555_SNP [dm6]	A	G	6.861e^-6	0.013	UPSTREAM ZnT49B & 1 other INTERGENIC
3L	12215722	3L_12215722_SNP [dm3] 3L_12222622_SNP [dm6]	A	G	6.865e^-6	0.013	INTRON app
2L	3263634	2L_3263634_SNP [dm3] 2L_3263634_SNP [dm6]	A	G	6.901e^-6	0.013	DOWNSTREAM CR45706 INTERGENIC
3L	4965030	3L_4965030_SNP [dm3] 3L_4965030_SNP [dm6]	T	C	6.915e^-6	0.013	INTRON Con
X	18668600	X_18668600_SNP [dm3] X_18774567_SNP [dm6]	A	C	6.923e^-6	0.013	UPSTREAM CCKLR-17D3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3721167	2L_3721167_SNP [dm3] 2L_3721167_SNP [dm6]	G	C	6.945e^-6	0.013	UPSTREAM Shaw INTRON Shaw
3R	26874449	3R_26874449_INS [dm3] 3R_31048727_INS [dm6]	G	GTTT	6.972e^-6	0.013	UPSTREAM Aph-4 INTERGENIC
3R	9740919	3R_9740919_SNP [dm3] 3R_13915197_SNP [dm6]	T	C	7.005e^-6	0.013	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8346314	2L_8346314_SNP [dm3] 2L_8346314_SNP [dm6]	C	T	7.025e^-6	0.013	UPSTREAM CG7778 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18206201	2R_18206201_SNP [dm3] 2R_22318696_SNP [dm6]	C	A	7.028e^-6	0.013	DOWNSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	12586653	2R_12586653_INS [dm3] 2R_16699148_INS [dm6]	A	ATATA	7.047e^-6	0.013	INTRON CG30463
2R	19604596	2R_19604596_INS [dm3] 2R_23717073_INS [dm6]	A	ATTGA	7.054e^-6	0.013	INTRON Sesn
3L	497310	3L_497310_SNP [dm3] 3L_497310_SNP [dm6]	G	A	7.059e^-6	0.013	INTRON klar
2L	15781469	2L_15781469_SNP [dm3] 2L_15781469_SNP [dm6]	T	A	7.100e^-6	0.014	INTERGENIC
2L	15781580	2L_15781580_SNP [dm3] 2L_15781580_SNP [dm6]	A	T	7.100e^-6	0.014	INTERGENIC
3L	15881909	3L_15881909_SNP [dm3] 3L_15888809_SNP [dm6]	C	G	7.116e^-6	0.014	INTRON pHCl
2L	7526224	2L_7526224_DEL [dm3] 2L_7526224_DEL [dm6]	TT	T	7.137e^-6	0.014	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1573477	3L_1573477_SNP [dm3] 3L_1573477_SNP [dm6]	G	A	7.141e^-6	0.014	INTRON CG12004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	602217	3L_602217_SNP [dm3] 3L_602217_SNP [dm6]	A	T	7.169e^-6	0.014	INTRON CG13893
2L	1867124	2L_1867124_SNP [dm3] 2L_1867124_SNP [dm6]	G	A	7.255e^-6	0.014	SYNONYMOUS_CODING CG31663
3L	18646758	3L_18646758_SNP [dm3] 3L_18653658_SNP [dm6]	A	T	7.270e^-6	0.014	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_dl
3L	18646770	3L_18646770_SNP [dm3] 3L_18653670_SNP [dm6]	C	T	7.270e^-6	0.014	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_dl
2L	2527922	2L_2527922_SNP [dm3] 2L_2527922_SNP [dm6]	G	A	7.306e^-6	0.014	INTERGENIC
X	8071473	X_8071473_SNP [dm3] X_8177440_SNP [dm6]	A	T	7.306e^-6	0.014	UPSTREAM slpr INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3L	12479115	3L_12479115_SNP [dm3] 3L_12486015_SNP [dm6]	T	C	7.361e^-6	0.014	SYNONYMOUS_CODING CG33725 UPSTREAM CG10663 DOWNSTREAM CG10660	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13747447	2R_13747447_SNP [dm3] 2R_17859942_SNP [dm6]	A	G	7.413e^-6	0.014	UTR_3_PRIME olf186-F UPSTREAM CG14490
2L	1568073	2L_1568073_SNP [dm3] 2L_1568073_SNP [dm6]	C	A	7.415e^-6	0.014	INTRON haf
3R	11994372	3R_11994372_SNP [dm3] 3R_16168650_SNP [dm6]	A	C	7.428e^-6	0.014	SYNONYMOUS_CODING CG6006 EXON CR43472	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	14424301	2L_14424301_SNP [dm3] 2L_14424301_SNP [dm6]	A	T	7.433e^-6	0.014	DOWNSTREAM Cpr35B INTERGENIC	TF binding site mE1_TFBS_cad
2L	17272963	2L_17272963_SNP [dm3] 2L_17272963_SNP [dm6]	T	A	7.465e^-6	0.014	INTERGENIC
2L	9118017	2L_9118017_SNP [dm3] 2L_9118017_SNP [dm6]	A	T	7.492e^-6	0.014	INTERGENIC
2L	19962182	2L_19962182_SNP [dm3] 2L_19962182_SNP [dm6]	G	A	7.494e^-6	0.014	SYNONYMOUS_CODING CG13965 UPSTREAM CG16772 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16341755	2L_16341755_SNP [dm3] 2L_16341755_SNP [dm6]	G	A	7.501e^-6	0.014	SYNONYMOUS_CODING CG44405 DOWNSTREAM chif & 1 other
2R	11829935	2R_11829935_SNP [dm3] 2R_15942430_SNP [dm6]	T	C	7.511e^-6	0.014	UPSTREAM CG8299 & 1 other INTERGENIC
2R	8672416	2R_8672416_SNP [dm3] 2R_12784911_SNP [dm6]	T	C	7.514e^-6	0.014	INTRON sca EXON CR45137	regulatory region REDfly_CRMs
3R	16902705	3R_16902705_SNP [dm3] 3R_21076983_SNP [dm6]	C	A	7.546e^-6	0.014	SYNONYMOUS_CODING HHEX DOWNSTREAM dmrt93B	TF binding site mE1_TFBS_chinmo
2L	16341791	2L_16341791_SNP [dm3] 2L_16341791_SNP [dm6]	C	A	7.567e^-6	0.014	SYNONYMOUS_CODING CG44405 DOWNSTREAM chif & 1 other
2L	8417864	2L_8417864_SNP [dm3] 2L_8417864_SNP [dm6]	T	A	7.571e^-6	0.014	INTRON Akap200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16058297	2L_16058297_SNP [dm3] 2L_16058297_SNP [dm6]	C	T	7.586e^-6	0.014	INTRON beat-Ia

By genomic position
Variant impact
Gene name

Microbiota_OTU110 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results