DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.383e^-16)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

14929 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	15772424	3L_15772424_SNP [dm3] 3L_15779324_SNP [dm6]	G	A	0	0	INTERGENIC
3L	23941852	3L_23941852_SNP [dm3] 3L_23948752_SNP [dm6]	G	T	0	0	INTRON CG40470
3L	23948927	3L_23948927_SNP [dm3] 3L_23955827_SNP [dm6]	A	T	0	0	INTRON CG40470
3L	23953498	3L_23953498_SNP [dm3] 3L_23960398_SNP [dm6]	T	A	0	0	INTRON CG40470
3L	23953546	3L_23953546_SNP [dm3] 3L_23960446_SNP [dm6]	C	A	0	0	INTRON CG40470
3L	23980145	3L_23980145_SNP [dm3] 3L_23987045_SNP [dm6]	A	G	0	0	UPSTREAM CG40470 INTERGENIC
3L	23980172	3L_23980172_SNP [dm3] 3L_23987072_SNP [dm6]	G	A	0	0	UPSTREAM CG40470 INTERGENIC
3L	24000392	3L_24000392_SNP [dm3] 3L_24007292_SNP [dm6]	A	G	0	0	INTERGENIC
3L	24000403	3L_24000403_SNP [dm3] 3L_24007303_SNP [dm6]	T	C	0	0	INTERGENIC
3L	24000667	3L_24000667_SNP [dm3] 3L_24007567_SNP [dm6]	C	G	0	0	INTERGENIC
3L	24001354	3L_24001354_SNP [dm3] 3L_24008254_SNP [dm6]	G	T	0	0	INTERGENIC
3L	24029261	3L_24029261_SNP [dm3] 3L_24036161_SNP [dm6]	G	A	0	0	DOWNSTREAM CG40045 INTERGENIC
3L	24035050	3L_24035050_SNP [dm3] 3L_24041950_SNP [dm6]	G	A	0	0	INTERGENIC
3L	24050464	3L_24050464_DEL [dm3] 3L_24057364_DEL [dm6]	ACTGTG	A	0	0	INTERGENIC
3L	24057576	3L_24057576_SNP [dm3] 3L_24064476_SNP [dm6]	C	T	0	0	INTERGENIC
3R	11998292	3R_11998292_SNP [dm3] 3R_16172570_SNP [dm6]	G	T	0	0	DOWNSTREAM CG6006 INTRON CG8925
3R	12009329	3R_12009329_SNP [dm3] 3R_16183607_SNP [dm6]	C	A	0	0	INTRON CG8927
3R	26893651	3R_26893651_INS [dm3] 3R_31067929_INS [dm6]	T	TGGA	0	0	INTRON Sox100B
2L	16015788	2L_16015788_SNP [dm3] 2L_16015788_SNP [dm6]	A	T	5.642e^-67	4.564e^-62	INTRON beat-Ic
3L	1551401	3L_1551401_SNP [dm3] 3L_1551401_SNP [dm6]	C	T	5.642e^-67	4.564e^-62	INTRON Cct1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1551404	3L_1551404_SNP [dm3] 3L_1551404_SNP [dm6]	G	A	5.642e^-67	4.564e^-62	INTRON Cct1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1551446	3L_1551446_INS [dm3] 3L_1551446_INS [dm6]	G	GTAG	5.642e^-67	4.564e^-62	INTRON Cct1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8877836	X_8877836_SNP [dm3] X_8983803_SNP [dm6]	G	C	5.642e^-67	4.564e^-62	SYNONYMOUS_CODING CG12662 INTRON rdgA & 1 other
X	17170921	X_17170921_SNP [dm3] X_17276888_SNP [dm6]	A	T	5.982e^-66	4.460e^-61	INTRON f
2R	9266598	2R_9266598_SNP [dm3] 2R_13379093_SNP [dm6]	C	T	5.994e^-66	4.460e^-61	INTERGENIC
3R	26894999	3R_26894999_SNP [dm3] 3R_31069277_SNP [dm6]	C	T	6.916e^-65	4.949e^-60	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11886128	2R_11886128_INS [dm3] 2R_15998623_INS [dm6]	T	TT	6.739e^-64	4.643e^-59	INTRON ATPCL
2L	17375814	2L_17375814_SNP [dm3] 2L_17375814_SNP [dm6]	C	T	7.274e^-64	4.834e^-59	INTRON Lrch	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3239182	2L_3239182_SNP [dm3] 2L_3239182_SNP [dm6]	A	T	7.772e^-63	4.986e^-58	INTERGENIC
X	17171228	X_17171228_SNP [dm3] X_17277195_SNP [dm6]	G	A	8.312e^-63	5.023e^-58	INTRON f
3R	26896054	3R_26896054_SNP [dm3] 3R_31070332_SNP [dm6]	A	T	8.370e^-63	5.023e^-58	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
X	17171224	X_17171224_SNP [dm3] X_17277191_SNP [dm6]	C	T	8.762e^-62	5.094e^-57	INTRON f
2L	6770735	2L_6770735_SNP [dm3] 2L_6770735_SNP [dm6]	C	T	5.015e^-22	2.827e^-17	INTRON CG11321
X	19309901	X_19309901_SNP [dm3] X_19415868_SNP [dm6]	T	G	5.947e^-22	3.254e^-17	INTRON kek5
2R	18906079	2R_18906079_SNP [dm3] 2R_23018556_SNP [dm6]	C	T	3.251e^-20	1.728e^-15	INTRON twi & 1 other
3L	23995369	3L_23995369_SNP [dm3] 3L_24002269_SNP [dm6]	T	A	7.774e^-20	4.017e^-15	INTERGENIC
3L	23970313	3L_23970313_SNP [dm3] 3L_23977213_SNP [dm6]	G	T	1.531e^-19	7.408e^-15	INTRON CG40470
3L	23993445	3L_23993445_SNP [dm3] 3L_24000345_SNP [dm6]	T	C	1.547e^-19	7.408e^-15	INTERGENIC
3L	23979086	3L_23979086_SNP [dm3] 3L_23985986_SNP [dm6]	C	T	1.553e^-19	7.408e^-15	INTRON CG40470
3L	23969634	3L_23969634_SNP [dm3] 3L_23976534_SNP [dm6]	T	C	3.102e^-19	1.443e^-14	INTRON CG40470
X	11842270	X_11842270_SNP [dm3] X_11948237_SNP [dm6]	T	A	1.162e^-18	5.271e^-14	INTRON cac
2L	10956848	2L_10956848_SNP [dm3] 2L_10956848_SNP [dm6]	T	A	1.488e^-18	6.436e^-14	INTRON dpr2
2L	10956853	2L_10956853_SNP [dm3] 2L_10956853_SNP [dm6]	C	A	1.488e^-18	6.436e^-14	INTRON dpr2
2R	11886138	2R_11886138_SNP [dm3] 2R_15998633_SNP [dm6]	A	C	2.898e^-18	1.225e^-13	INTRON ATPCL
2L	18212638	2L_18212638_SNP [dm3] 2L_18212638_SNP [dm6]	C	T	3.994e^-18	1.651e^-13	INTRON CG42750
2R	11886172	2R_11886172_SNP [dm3] 2R_15998667_SNP [dm6]	G	A	5.422e^-18	2.193e^-13	INTRON ATPCL
3L	4727462	3L_4727462_SNP [dm3] 3L_4727462_SNP [dm6]	A	C	6.269e^-17	2.474e^-12	INTRON RhoGEF64C
3L	1482100	3L_1482100_DEL [dm3] 3L_1482100_DEL [dm6]	TTCGTTCGGGACAAT...	T	6.382e^-17	2.474e^-12	INTRON stet	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2R	1337553	2R_1337553_SNP [dm3] 2R_5450048_SNP [dm6]	T	A	8.330e^-17	3.103e^-12	INTRON laccase2
X	8899167	X_8899167_SNP [dm3] X_9005134_SNP [dm6]	G	T	8.340e^-17	3.103e^-12	INTRON rdgA & 1 other
2L	20550969	2L_20550969_SNP [dm3] 2L_20550969_SNP [dm6]	A	G	1.195e^-16	3.913e^-12	INTERGENIC
3L	24002578	3L_24002578_DEL [dm3] 3L_24009478_DEL [dm6]	ACTCTATGCA	A	1.278e^-16	3.913e^-12	DOWNSTREAM CR40053 INTERGENIC
3L	24029932	3L_24029932_SNP [dm3] 3L_24036832_SNP [dm6]	A	T	1.278e^-16	3.913e^-12	DOWNSTREAM CG40045 INTERGENIC
3L	24029934	3L_24029934_DEL [dm3] 3L_24036834_DEL [dm6]	TTTATTTTATCACTCTTTAC...	T	1.278e^-16	3.913e^-12	DOWNSTREAM CG40045 INTERGENIC
3L	24030096	3L_24030096_DEL [dm3] 3L_24036996_DEL [dm6]	GATCG	G	1.278e^-16	3.913e^-12	INTERGENIC
3L	24033498	3L_24033498_SNP [dm3] 3L_24040398_SNP [dm6]	C	T	1.278e^-16	3.913e^-12	INTERGENIC
3L	24033547	3L_24033547_SNP [dm3] 3L_24040447_SNP [dm6]	C	T	1.278e^-16	3.913e^-12	INTERGENIC
3L	24042150	3L_24042150_SNP [dm3] 3L_24049050_SNP [dm6]	T	C	1.278e^-16	3.913e^-12	INTERGENIC
3L	24042180	3L_24042180_SNP [dm3] 3L_24049080_SNP [dm6]	A	G	1.278e^-16	3.913e^-12	INTERGENIC
3L	24042907	3L_24042907_DEL [dm3] 3L_24049807_DEL [dm6]	ACAACTTAAAATGACTCTAT...	A	1.278e^-16	3.913e^-12	INTERGENIC
3L	4309376	3L_4309376_SNP [dm3] 3L_4309376_SNP [dm6]	C	T	1.283e^-16	3.913e^-12	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26765978	3R_26765978_SNP [dm3] 3R_30940256_SNP [dm6]	C	T	1.374e^-16	4.122e^-12	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26927184	3R_26927184_DEL [dm3] 3R_31101462_DEL [dm6]	AATGATATAGGCGTGT...	A	1.492e^-16	4.366e^-12	UPSTREAM CG15553 INTERGENIC
3L	15773740	3L_15773740_SNP [dm3] 3L_15780640_SNP [dm6]	C	T	1.525e^-16	4.366e^-12	INTERGENIC
3L	15773741	3L_15773741_SNP [dm3] 3L_15780641_SNP [dm6]	C	A	1.525e^-16	4.366e^-12	INTERGENIC
3R	26923441	3R_26923441_DEL [dm3] 3R_31097719_DEL [dm6]	GTCTTTTACTACTTTG...	G	1.711e^-16	4.824e^-12	UPSTREAM CG11317 INTERGENIC
3L	24044561	3L_24044561_SNP [dm3] 3L_24051461_SNP [dm6]	A	G	2.238e^-16	6.215e^-12	INTERGENIC
3R	22556493	3R_22556493_SNP [dm3] 3R_26730771_SNP [dm6]	G	A	2.618e^-16	6.682e^-12	DOWNSTREAM CG14246 INTERGENIC
3R	26922271	3R_26922271_SNP [dm3] 3R_31096549_SNP [dm6]	A	T	2.807e^-16	6.682e^-12	INTRON CG11317
3R	26922912	3R_26922912_SNP [dm3] 3R_31097190_SNP [dm6]	C	A	2.807e^-16	6.682e^-12	START_GAINED CG11317 UTR_5_PRIME CG11317
2L	12101353	2L_12101353_SNP [dm3] 2L_12101353_SNP [dm6]	A	G	2.838e^-16	6.682e^-12	SYNONYMOUS_CODING Patsas DOWNSTREAM Ced-12
2L	14752808	2L_14752808_SNP [dm3] 2L_14752808_SNP [dm6]	A	T	2.838e^-16	6.682e^-12	INTERGENIC
2L	3239019	2L_3239019_SNP [dm3] 2L_3239019_SNP [dm6]	G	A	2.838e^-16	6.682e^-12	INTERGENIC
2L	3239077	2L_3239077_SNP [dm3] 2L_3239077_SNP [dm6]	G	C	2.838e^-16	6.682e^-12	INTERGENIC
2R	14063413	2R_14063413_SNP [dm3] 2R_18175908_SNP [dm6]	G	T	2.838e^-16	6.682e^-12	UTR_3_PRIME CG5726 DOWNSTREAM CG10916	TF binding site mE1_TFBS_cad
2R	17945307	2R_17945307_SNP [dm3] 2R_22057802_SNP [dm6]	G	A	2.838e^-16	6.682e^-12	UPSTREAM CG13500 INTERGENIC	TF binding site mE1_TFBS_cad
2R	17945308	2R_17945308_SNP [dm3] 2R_22057803_SNP [dm6]	G	A	2.838e^-16	6.682e^-12	UPSTREAM CG13500 INTERGENIC	TF binding site mE1_TFBS_cad
3R	23086254	3R_23086254_SNP [dm3] 3R_27260532_SNP [dm6]	T	G	2.838e^-16	6.682e^-12	SYNONYMOUS_CODING woc UPSTREAM woc EXON CR44049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	17170978	X_17170978_DEL [dm3] X_17276945_DEL [dm6]	CAATCAT	C	2.838e^-16	6.682e^-12	INTRON f
2L	16241999	2L_16241999_SNP [dm3] 2L_16241999_SNP [dm6]	G	A	2.891e^-16	6.724e^-12	UTR_5_PRIME CG42818 DOWNSTREAM CG42817
2L	16124739	2L_16124739_SNP [dm3] 2L_16124739_SNP [dm6]	G	A	2.998e^-16	6.886e^-12	INTERGENIC
3L	24002365	3L_24002365_SNP [dm3] 3L_24009265_SNP [dm6]	T	A	3.846e^-16	8.678e^-12	DOWNSTREAM CR40053 INTERGENIC
3L	24005202	3L_24005202_SNP [dm3] 3L_24012102_SNP [dm6]	G	A	3.905e^-16	8.678e^-12	UPSTREAM CR40053 INTERGENIC
3L	24029826	3L_24029826_SNP [dm3] 3L_24036726_SNP [dm6]	A	G	3.918e^-16	8.678e^-12	DOWNSTREAM CG40045 INTERGENIC
2L	17331787	2L_17331787_SNP [dm3] 2L_17331787_SNP [dm6]	C	T	4.702e^-16	1.009e^-11	INTERGENIC
X	19285386	X_19285386_SNP [dm3] X_19391353_SNP [dm6]	T	C	4.718e^-16	1.009e^-11	INTRON kek5
X	17171165	X_17171165_SNP [dm3] X_17277132_SNP [dm6]	T	A	4.827e^-16	1.009e^-11	INTRON f
X	17171167	X_17171167_INS [dm3] X_17277134_INS [dm6]	G	ATACATTACATTTATACATT...	4.827e^-16	1.009e^-11	INTRON f
3L	3511253	3L_3511253_SNP [dm3] 3L_3511253_SNP [dm6]	C	T	4.828e^-16	1.009e^-11	SYNONYMOUS_CODING ImpE2 DOWNSTREAM CG42324	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15773067	3L_15773067_SNP [dm3] 3L_15779967_SNP [dm6]	T	C	4.967e^-16	1.015e^-11	INTERGENIC
2R	17945532	2R_17945532_SNP [dm3] 2R_22058027_SNP [dm6]	G	A	4.974e^-16	1.015e^-11	UPSTREAM CG13500 DOWNSTREAM CG13501 INTERGENIC
3R	26916827	3R_26916827_SNP [dm3] 3R_31091105_SNP [dm6]	G	A	5.126e^-16	1.015e^-11	UTR_3_PRIME CG11317
2L	14752746	2L_14752746_SNP [dm3] 2L_14752746_SNP [dm6]	A	G	5.182e^-16	1.015e^-11	INTERGENIC
2L	3239345	2L_3239345_SNP [dm3] 2L_3239345_SNP [dm6]	C	G	5.182e^-16	1.015e^-11	INTERGENIC
3L	3797845	3L_3797845_SNP [dm3] 3L_3797845_SNP [dm6]	C	A	5.182e^-16	1.015e^-11	INTRON CG32264
3L	15772307	3L_15772307_SNP [dm3] 3L_15779207_SNP [dm6]	C	T	5.589e^-16	1.083e^-11	INTERGENIC
2L	1347497	2L_1347497_SNP [dm3] 2L_1347497_SNP [dm6]	A	T	7.979e^-16	1.507e^-11	INTERGENIC
2L	18239300	2L_18239300_SNP [dm3] 2L_18239300_SNP [dm6]	T	A	8.054e^-16	1.507e^-11	INTRON CG42750
3R	23088373	3R_23088373_SNP [dm3] 3R_27262651_SNP [dm6]	C	G	8.189e^-16	1.507e^-11	NON_SYNONYMOUS_CODING woc DOWNSTREAM CR44049	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	26899420	3R_26899420_SNP [dm3] 3R_31073698_SNP [dm6]	G	A	8.351e^-16	1.507e^-11	INTRON Sox100B
3R	26918587	3R_26918587_SNP [dm3] 3R_31092865_SNP [dm6]	A	C	8.376e^-16	1.507e^-11	INTRON CG11317
3R	23364520	3R_23364520_SNP [dm3] 3R_27538798_SNP [dm6]	G	T	8.415e^-16	1.507e^-11	UPSTREAM CR44289 EXON CR44288
3R	23365162	3R_23365162_SNP [dm3] 3R_27539440_SNP [dm6]	T	G	8.415e^-16	1.507e^-11	DOWNSTREAM CR44288 INTERGENIC
2L	16242006	2L_16242006_SNP [dm3] 2L_16242006_SNP [dm6]	T	A	8.424e^-16	1.507e^-11	UTR_5_PRIME CG42818 DOWNSTREAM CG42817
2R	17389113	2R_17389113_SNP [dm3] 2R_21501608_SNP [dm6]	A	G	8.619e^-16	1.527e^-11	UPSTREAM MESK2 INTRON TAF1C-like	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26915380	3R_26915380_SNP [dm3] 3R_31089658_SNP [dm6]	C	G	9.388e^-16	1.648e^-11	INTERGENIC
3L	6530255	3L_6530255_SNP [dm3] 3L_6537155_SNP [dm6]	T	C	9.493e^-16	1.651e^-11	INTRON sfl
3L	24020609	3L_24020609_SNP [dm3] 3L_24027509_SNP [dm6]	A	C	1.090e^-15	1.754e^-11	INTERGENIC
2R	15467481	2R_15467481_SNP [dm3] 2R_19579976_SNP [dm6]	C	T	1.094e^-15	1.754e^-11	INTRON sm
2R	15467532	2R_15467532_SNP [dm3] 2R_19580027_SNP [dm6]	G	T	1.094e^-15	1.754e^-11	INTRON sm
3L	1556383	3L_1556383_SNP [dm3] 3L_1556383_SNP [dm6]	G	T	1.094e^-15	1.754e^-11	SYNONYMOUS_CODING CG12099	TF binding site mE1_TFBS_cad
3L	4337616	3L_4337616_DEL [dm3] 3L_4337616_DEL [dm6]	TTTTAAGTTAAGGCCTTTTT...	ACT	1.094e^-15	1.754e^-11	INTRON Cip4
X	17170393	X_17170393_SNP [dm3] X_17276360_SNP [dm6]	G	A	1.094e^-15	1.754e^-11	INTRON f
X	19924351	X_19924351_SNP [dm3] X_20030318_SNP [dm6]	T	C	1.094e^-15	1.754e^-11	INTRON Dop2R	TF binding site mE1_TFBS_chinmo
X	5393036	X_5393036_SNP [dm3] X_5499003_SNP [dm6]	G	A	1.094e^-15	1.754e^-11	INTERGENIC
X	5393300	X_5393300_SNP [dm3] X_5499267_SNP [dm6]	T	A	1.094e^-15	1.754e^-11	DOWNSTREAM CG32762 INTERGENIC
2R	17117750	2R_17117750_SNP [dm3] 2R_21230245_SNP [dm6]	G	T	1.433e^-15	2.279e^-11	INTRON ASPP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3239186	2L_3239186_SNP [dm3] 2L_3239186_SNP [dm6]	G	C	1.500e^-15	2.365e^-11	INTERGENIC
3R	26916749	3R_26916749_SNP [dm3] 3R_31091027_SNP [dm6]	T	G	1.585e^-15	2.478e^-11	UTR_3_PRIME CG11317
3R	26893878	3R_26893878_SNP [dm3] 3R_31068156_SNP [dm6]	C	T	1.858e^-15	2.815e^-11	INTRON Sox100B
3R	26895804	3R_26895804_SNP [dm3] 3R_31070082_SNP [dm6]	C	A	1.858e^-15	2.815e^-11	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
3R	26896439	3R_26896439_SNP [dm3] 3R_31070717_SNP [dm6]	C	T	1.858e^-15	2.815e^-11	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	24036674	3L_24036674_SNP [dm3] 3L_24043574_SNP [dm6]	C	T	1.865e^-15	2.815e^-11	INTERGENIC
3R	26604365	3R_26604365_SNP [dm3] 3R_30778643_SNP [dm6]	A	G	1.876e^-15	2.815e^-11	INTRON zfh1
2R	8885156	2R_8885156_SNP [dm3] 2R_12997651_SNP [dm6]	T	A	1.985e^-15	2.954e^-11	INTRON Su_z_2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
2L	3239202	2L_3239202_SNP [dm3] 2L_3239202_SNP [dm6]	A	T	2.228e^-15	3.290e^-11	INTERGENIC
3R	25277175	3R_25277175_SNP [dm3] 3R_29451453_SNP [dm6]	A	T	2.556e^-15	3.715e^-11	INTRON Ptp99A
3R	25277176	3R_25277176_SNP [dm3] 3R_29451454_SNP [dm6]	A	T	2.556e^-15	3.715e^-11	INTRON Ptp99A
3L	13420406	3L_13420406_SNP [dm3] 3L_13427306_SNP [dm6]	G	T	2.639e^-15	3.806e^-11	UPSTREAM CG14105 INTERGENIC
3L	5984891	3L_5984891_SNP [dm3] 3L_5991791_SNP [dm6]	G	A	2.912e^-15	4.168e^-11	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26897870	3R_26897870_SNP [dm3] 3R_31072148_SNP [dm6]	T	A	3.105e^-15	4.376e^-11	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26909218	3R_26909218_DEL [dm3] 3R_31083496_DEL [dm6]	TCT	T	3.105e^-15	4.376e^-11	DOWNSTREAM Sox100B INTERGENIC
2R	15467559	2R_15467559_SNP [dm3] 2R_19580054_SNP [dm6]	A	C	3.231e^-15	4.520e^-11	INTRON sm
3L	24020658	3L_24020658_SNP [dm3] 3L_24027558_SNP [dm6]	C	A	3.306e^-15	4.589e^-11	UPSTREAM CG40045 INTERGENIC
3L	7048616	3L_7048616_SNP [dm3] 3L_7055516_SNP [dm6]	A	T	3.333e^-15	4.594e^-11	INTERGENIC
X	2995757	X_2995757_SNP [dm3] X_3101724_SNP [dm6]	T	G	3.487e^-15	4.702e^-11	INTRON kirre
2R	10962868	2R_10962868_SNP [dm3] 2R_15075363_SNP [dm6]	C	T	3.488e^-15	4.702e^-11	INTERGENIC
2R	10962869	2R_10962869_SNP [dm3] 2R_15075364_SNP [dm6]	A	G	3.488e^-15	4.702e^-11	INTERGENIC
2L	10202934	2L_10202934_SNP [dm3] 2L_10202934_SNP [dm6]	G	A	3.616e^-15	4.840e^-11	SYNONYMOUS_CODING CG34159 DOWNSTREAM RpL7
2L	17408734	2L_17408734_SNP [dm3] 2L_17408734_SNP [dm6]	C	T	5.152e^-15	6.846e^-11	NON_SYNONYMOUS_CODING CLIP-190 DOWNSTREAM Rpb11
2R	2817543	2R_2817543_SNP [dm3] 2R_6930038_SNP [dm6]	T	A	5.274e^-15	6.959e^-11	NON_SYNONYMOUS_CODING mim INTRON mim	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	17137788	2L_17137788_SNP [dm3] 2L_17137788_SNP [dm6]	C	A	6.008e^-15	7.872e^-11	INTRON beat-IIIa & 1 other
3R	26913723	3R_26913723_MNP [dm3] 3R_31088001_MNP [dm6]	TCG	ATA	8.199e^-15	1.059e^-10	INTERGENIC
3R	26913729	3R_26913729_SNP [dm3] 3R_31088007_SNP [dm6]	G	A	8.199e^-15	1.059e^-10	INTERGENIC
3L	16048834	3L_16048834_SNP [dm3] 3L_16055734_SNP [dm6]	T	G	9.076e^-15	1.165e^-10	INTRON Mbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	18125404	3R_18125404_SNP [dm3] 3R_22299682_SNP [dm6]	A	G	9.252e^-15	1.179e^-10	UTR_5_PRIME CG7084 INTRON CG7084
2L	16998359	2L_16998359_SNP [dm3] 2L_16998359_SNP [dm6]	C	T	9.507e^-15	1.203e^-10	UPSTREAM CR45357 EXON CR45356
3R	26893782	3R_26893782_SNP [dm3] 3R_31068060_SNP [dm6]	G	T	9.761e^-15	1.227e^-10	INTRON Sox100B
2R	9797949	2R_9797949_SNP [dm3] 2R_13910444_SNP [dm6]	G	A	1.020e^-14	1.273e^-10	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20671744	X_20671744_DEL [dm3] X_20800717_DEL [dm6]	AA	A	1.027e^-14	1.274e^-10	INTRON shakB	TF binding site mE1_TFBS_HSA
2R	1078020	2R_1078020_SNP [dm3] 2R_5190515_SNP [dm6]	C	G	1.052e^-14	1.291e^-10	INTRON Nipped-A	transposable element FlyBase
2R	8762140	2R_8762140_SNP [dm3] 2R_12874635_SNP [dm6]	T	C	1.054e^-14	1.291e^-10	NON_SYNONYMOUS_CODING CG3790 UPSTREAM CR43468 DOWNSTREAM CG3814 EXON CR43469	TF binding site mE1_TFBS_cad
3R	26913728	3R_26913728_SNP [dm3] 3R_31088006_SNP [dm6]	G	T	1.413e^-14	1.718e^-10	INTERGENIC
X	8861673	X_8861673_SNP [dm3] X_8967640_SNP [dm6]	C	T	1.569e^-14	1.896e^-10	INTRON rdgA
3R	24470256	3R_24470256_SNP [dm3] 3R_28644534_SNP [dm6]	T	C	1.779e^-14	2.136e^-10	INTERGENIC
X	10717185	X_10717185_SNP [dm3] X_10823152_SNP [dm6]	T	G	1.957e^-14	2.334e^-10	UPSTREAM Imp INTRON Imp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19990144	2R_19990144_SNP [dm3] 2R_24102621_SNP [dm6]	A	T	3.483e^-14	4.127e^-10	SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6662399	2R_6662399_SNP [dm3] 2R_10774894_SNP [dm6]	C	T	4.129e^-14	4.862e^-10	INTRON CG33144
3L	11504079	3L_11504079_DEL [dm3] 3L_11510979_DEL [dm6]	AT	C	5.000e^-14	5.850e^-10	UPSTREAM CG33272 DOWNSTREAM Sgs7 INTERGENIC
2R	15468087	2R_15468087_SNP [dm3] 2R_19580582_SNP [dm6]	G	C	6.055e^-14	7.041e^-10	INTRON sm
X	7473703	X_7473703_SNP [dm3] X_7579670_SNP [dm6]	T	C	6.783e^-14	7.838e^-10	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25260097	3R_25260097_SNP [dm3] 3R_29434375_SNP [dm6]	A	T	1.071e^-13	1.139e^-9	INTRON Ptp99A
3R	25260108	3R_25260108_SNP [dm3] 3R_29434386_SNP [dm6]	C	T	1.071e^-13	1.139e^-9	INTRON Ptp99A
2L	11929055	2L_11929055_SNP [dm3] 2L_11929055_SNP [dm6]	G	A	1.359e^-13	1.139e^-9	UPSTREAM Pde1c INTERGENIC
2L	18819705	2L_18819705_SNP [dm3] 2L_18819705_SNP [dm6]	G	C	1.359e^-13	1.139e^-9	INTRON CG17324
2L	18819711	2L_18819711_SNP [dm3] 2L_18819711_SNP [dm6]	C	G	1.359e^-13	1.139e^-9	INTRON CG17324
2L	20562604	2L_20562604_SNP [dm3] 2L_20562604_SNP [dm6]	G	A	1.359e^-13	1.139e^-9	DOWNSTREAM mir-4973 EXON CR45347	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20563896	2L_20563896_SNP [dm3] 2L_20563896_SNP [dm6]	T	G	1.359e^-13	1.139e^-9	INTRON CR45347
2L	20563897	2L_20563897_SNP [dm3] 2L_20563897_SNP [dm6]	G	A	1.359e^-13	1.139e^-9	INTRON CR45347
2L	20584797	2L_20584797_SNP [dm3] 2L_20584797_SNP [dm6]	C	A	1.359e^-13	1.139e^-9	INTRON CR44909
2L	20584949	2L_20584949_SNP [dm3] 2L_20584949_SNP [dm6]	A	C	1.359e^-13	1.139e^-9	INTRON CR44909
2L	20589038	2L_20589038_SNP [dm3] 2L_20589038_SNP [dm6]	A	G	1.359e^-13	1.139e^-9	INTRON CR44909
2L	20591148	2L_20591148_SNP [dm3] 2L_20591148_SNP [dm6]	T	A	1.359e^-13	1.139e^-9	INTRON CR44909
2L	20592530	2L_20592530_SNP [dm3] 2L_20592530_SNP [dm6]	T	G	1.359e^-13	1.139e^-9	INTRON CR44909
2L	20598750	2L_20598750_SNP [dm3] 2L_20598750_SNP [dm6]	G	A	1.359e^-13	1.139e^-9	INTRON CR44909
2L	20599492	2L_20599492_SNP [dm3] 2L_20599492_SNP [dm6]	G	C	1.359e^-13	1.139e^-9	INTRON CR44909	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20671869	2L_20671869_SNP [dm3] 2L_20671869_SNP [dm6]	G	A	1.359e^-13	1.139e^-9	INTRON CG31678	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20860404	2L_20860404_SNP [dm3] 2L_20860404_SNP [dm6]	C	T	1.359e^-13	1.139e^-9	INTRON CG9336
2L	20930377	2L_20930377_SNP [dm3] 2L_20930377_SNP [dm6]	C	T	1.359e^-13	1.139e^-9	SYNONYMOUS_CODING CG9270 DOWNSTREAM CR33319	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	707396	2L_707396_SNP [dm3] 2L_707396_SNP [dm6]	G	A	1.359e^-13	1.139e^-9	NON_SYNONYMOUS_CODING ds	TF binding site mE1_TFBS_sens
2L	9578836	2L_9578836_SNP [dm3] 2L_9578836_SNP [dm6]	T	C	1.359e^-13	1.139e^-9	NON_SYNONYMOUS_CODING CG31709 DOWNSTREAM gcm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12279403	2R_12279403_SNP [dm3] 2R_16391898_SNP [dm6]	A	C	1.359e^-13	1.139e^-9	INTRON Sema-2b	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13965580	2R_13965580_DEL [dm3] 2R_18078075_DEL [dm6]	CGAC	C	1.359e^-13	1.139e^-9	INTRON CG34386
2R	13965604	2R_13965604_SNP [dm3] 2R_18078099_SNP [dm6]	G	A	1.359e^-13	1.139e^-9	INTRON CG34386
2R	16488824	2R_16488824_SNP [dm3] 2R_20601319_SNP [dm6]	T	A	1.359e^-13	1.139e^-9	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5903797	2R_5903797_SNP [dm3] 2R_10016292_SNP [dm6]	T	G	1.359e^-13	1.139e^-9	INTRON Pka-R2
2R	6180322	2R_6180322_SNP [dm3] 2R_10292817_SNP [dm6]	C	T	1.359e^-13	1.139e^-9	SYNONYMOUS_CODING CAP UTR_5_PRIME CAP INTRON CAP	TF binding site mE1_TFBS_chinmo
2R	6340331	2R_6340331_SNP [dm3] 2R_10452826_SNP [dm6]	C	T	1.359e^-13	1.139e^-9	UPSTREAM Cyp49a1 INTRON Galphao & 1 other
2R	6356199	2R_6356199_SNP [dm3] 2R_10468694_SNP [dm6]	T	A	1.359e^-13	1.139e^-9	SPLICE_SITE_REGION CG11777 UPSTREAM Caf1-105 DOWNSTREAM whd INTRON CG11777	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	6769015	2R_6769015_SNP [dm3] 2R_10881510_SNP [dm6]	G	A	1.359e^-13	1.139e^-9	NON_SYNONYMOUS_CODING Pex6	TF binding site mE1_TFBS_sens
2R	6771002	2R_6771002_SNP [dm3] 2R_10883497_SNP [dm6]	C	A	1.359e^-13	1.139e^-9	UPSTREAM CG18003 DOWNSTREAM Pex6 INTERGENIC
2R	9321741	2R_9321741_SNP [dm3] 2R_13434236_SNP [dm6]	T	C	1.359e^-13	1.139e^-9	SYNONYMOUS_CODING Ser8 DOWNSTREAM CG30065 INTRON CG42321
3L	1600431	3L_1600431_SNP [dm3] 3L_1600431_SNP [dm6]	C	G	1.359e^-13	1.139e^-9	UTR_3_PRIME CG13917 DOWNSTREAM CG12104 & 1 other
3L	4562181	3L_4562181_DEL [dm3] 3L_4562181_DEL [dm6]	CGATGGGC	C	1.359e^-13	1.139e^-9	INTRON CG42540
3L	4562191	3L_4562191_INS [dm3] 3L_4562191_INS [dm6]	A	AAAGGATTACATTTTCA...	1.359e^-13	1.139e^-9	INTRON CG42540
3L	4563055	3L_4563055_SNP [dm3] 3L_4563055_SNP [dm6]	A	G	1.359e^-13	1.139e^-9	INTRON CG42540
3L	4563590	3L_4563590_SNP [dm3] 3L_4563590_SNP [dm6]	A	T	1.359e^-13	1.139e^-9	INTRON CG42540	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5538856	3L_5538856_SNP [dm3] 3L_5545756_SNP [dm6]	T	C	1.359e^-13	1.139e^-9	INTRON CG10625	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	556543	3L_556543_SNP [dm3] 3L_556543_SNP [dm6]	G	T	1.359e^-13	1.139e^-9	INTRON hipk	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	557404	3L_557404_SNP [dm3] 3L_557404_SNP [dm6]	A	G	1.359e^-13	1.139e^-9	INTRON hipk
3L	567634	3L_567634_SNP [dm3] 3L_567634_SNP [dm6]	T	C	1.359e^-13	1.139e^-9	INTRON hipk
3L	567743	3L_567743_SNP [dm3] 3L_567743_SNP [dm6]	C	G	1.359e^-13	1.139e^-9	INTRON hipk
3L	567965	3L_567965_SNP [dm3] 3L_567965_SNP [dm6]	A	T	1.359e^-13	1.139e^-9	INTRON hipk
3L	568367	3L_568367_SNP [dm3] 3L_568367_SNP [dm6]	G	T	1.359e^-13	1.139e^-9	UPSTREAM hipk INTRON hipk	TF binding site mE1_TFBS_HSA
3L	570254	3L_570254_SNP [dm3] 3L_570254_SNP [dm6]	A	G	1.359e^-13	1.139e^-9	INTRON hipk	TF binding site mE1_TFBS_cad
3L	572012	3L_572012_SNP [dm3] 3L_572012_SNP [dm6]	T	G	1.359e^-13	1.139e^-9	INTRON hipk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	572018	3L_572018_SNP [dm3] 3L_572018_SNP [dm6]	A	C	1.359e^-13	1.139e^-9	INTRON hipk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	572033	3L_572033_SNP [dm3] 3L_572033_SNP [dm6]	A	T	1.359e^-13	1.139e^-9	INTRON hipk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	911475	3L_911475_SNP [dm3] 3L_911475_SNP [dm6]	C	A	1.359e^-13	1.139e^-9	UTR_3_PRIME nerfin-1	regulatory region REDfly_CRMs
3R	17909923	3R_17909923_SNP [dm3] 3R_22084201_SNP [dm6]	A	T	1.359e^-13	1.139e^-9	DOWNSTREAM CG13408 INTERGENIC
3R	20554538	3R_20554538_SNP [dm3] 3R_24728816_SNP [dm6]	A	T	1.359e^-13	1.139e^-9	INTRON tok
3R	22804564	3R_22804564_SNP [dm3] 3R_26978842_SNP [dm6]	C	A	1.359e^-13	1.139e^-9	NON_SYNONYMOUS_CODING CG14253 DOWNSTREAM CG5521
3R	23118166	3R_23118166_DEL [dm3] 3R_27292444_DEL [dm6]	CGGTCT	G	1.359e^-13	1.139e^-9	UPSTREAM CG3348 DOWNSTREAM Hmu INTERGENIC
3R	23145011	3R_23145011_SNP [dm3] 3R_27319289_SNP [dm6]	G	A	1.359e^-13	1.139e^-9	DOWNSTREAM CR44287 INTRON CG3339	TF binding site mE1_TFBS_chinmo
3R	23538608	3R_23538608_SNP [dm3] 3R_27712886_SNP [dm6]	C	G	1.359e^-13	1.139e^-9	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	24364645	3R_24364645_SNP [dm3] 3R_28538923_SNP [dm6]	C	T	1.359e^-13	1.139e^-9	INTRON Ppn
3R	25190403	3R_25190403_SNP [dm3] 3R_29364681_SNP [dm6]	A	T	1.359e^-13	1.139e^-9	INTERGENIC
X	12069651	X_12069651_SNP [dm3] X_12175618_SNP [dm6]	G	A	1.359e^-13	1.139e^-9	DOWNSTREAM CG1924 INTRON Ten-a
X	12069688	X_12069688_SNP [dm3] X_12175655_SNP [dm6]	A	G	1.359e^-13	1.139e^-9	DOWNSTREAM CG1924 INTRON Ten-a
X	12069689	X_12069689_SNP [dm3] X_12175656_SNP [dm6]	C	A	1.359e^-13	1.139e^-9	DOWNSTREAM CG1924 INTRON Ten-a
X	12069892	X_12069892_SNP [dm3] X_12175859_SNP [dm6]	C	G	1.359e^-13	1.139e^-9	DOWNSTREAM CG1924 INTRON Ten-a
X	16309493	X_16309493_SNP [dm3] X_16415460_SNP [dm6]	A	G	1.359e^-13	1.139e^-9	NON_SYNONYMOUS_CODING Traf-like UTR_5_PRIME Traf-like DOWNSTREAM CG4301 INTRON Traf-like	TF binding site BDTNP1_TFBS_twi
2L	11530996	2L_11530996_SNP [dm3] 2L_11530996_SNP [dm6]	T	G	2.107e^-13	1.436e^-9	UTR_5_PRIME CG31706 UPSTREAM CG34162 DOWNSTREAM CR42743
2L	20600291	2L_20600291_SNP [dm3] 2L_20600291_SNP [dm6]	T	A	2.107e^-13	1.436e^-9	INTRON CR44909	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9579282	2L_9579282_SNP [dm3] 2L_9579282_SNP [dm6]	T	G	2.107e^-13	1.436e^-9	NON_SYNONYMOUS_CODING CG31709 DOWNSTREAM gcm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16488847	2R_16488847_SNP [dm3] 2R_20601342_SNP [dm6]	A	G	2.107e^-13	1.436e^-9	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21905769	X_21905769_SNP [dm3] X_22503933_SNP [dm6]	C	A	2.108e^-13	1.436e^-9	UTR_3_PRIME l_1_G0196 INTRON l_1_G0196
X	21905785	X_21905785_SNP [dm3] X_22503949_SNP [dm6]	A	G	2.108e^-13	1.436e^-9	DOWNSTREAM l_1_G0196 INTRON l_1_G0196
2R	10227630	2R_10227630_SNP [dm3] 2R_14340125_SNP [dm6]	C	T	2.108e^-13	1.436e^-9	INTRON Shroom
2L	578840	2L_578840_SNP [dm3] 2L_578840_SNP [dm6]	C	T	2.109e^-13	1.436e^-9	NON_SYNONYMOUS_CODING Pph13	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	1472511	3L_1472511_SNP [dm3] 3L_1472511_SNP [dm6]	A	G	2.109e^-13	1.436e^-9	UPSTREAM CG32319 INTRON Ptp61F	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21747116	3R_21747116_SNP [dm3] 3R_25921394_SNP [dm6]	G	T	2.109e^-13	1.436e^-9	NON_SYNONYMOUS_CODING CG14546 DOWNSTREAM CG42235
3L	4830027	3L_4830027_SNP [dm3] 3L_4830027_SNP [dm6]	C	T	2.112e^-13	1.436e^-9	NON_SYNONYMOUS_CODING CG13708 DOWNSTREAM Aats-leu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6709837	2L_6709837_SNP [dm3] 2L_6709837_SNP [dm6]	T	G	2.112e^-13	1.436e^-9	UPSTREAM Tsp INTERGENIC	TF binding site mE1_TFBS_cad
2L	7440731	2L_7440731_SNP [dm3] 2L_7440731_SNP [dm6]	G	T	2.112e^-13	1.436e^-9	UPSTREAM CG5973 INTRON CG5973
2L	7442285	2L_7442285_SNP [dm3] 2L_7442285_SNP [dm6]	A	G	2.112e^-13	1.436e^-9	INTRON CG5973
2R	10225809	2R_10225809_SNP [dm3] 2R_14338304_SNP [dm6]	G	A	2.112e^-13	1.436e^-9	INTRON Shroom
2R	17742311	2R_17742311_SNP [dm3] 2R_21854806_SNP [dm6]	C	T	2.112e^-13	1.436e^-9	INTERGENIC	TF binding site mE1_TFBS_cad
2R	8420771	2R_8420771_SNP [dm3] 2R_12533266_SNP [dm6]	T	C	2.112e^-13	1.436e^-9	INTRON fra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	18152912	3R_18152912_SNP [dm3] 3R_22327190_SNP [dm6]	A	T	2.112e^-13	1.436e^-9	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	22366002	3R_22366002_SNP [dm3] 3R_26540280_SNP [dm6]	G	A	2.112e^-13	1.436e^-9	INTRON scrib
3R	22366031	3R_22366031_SNP [dm3] 3R_26540309_SNP [dm6]	A	G	2.112e^-13	1.436e^-9	INTRON scrib
3R	23396682	3R_23396682_SNP [dm3] 3R_27570960_SNP [dm6]	C	T	2.112e^-13	1.436e^-9	INTRON wdb
3R	24502280	3R_24502280_SNP [dm3] 3R_28676558_SNP [dm6]	C	A	2.112e^-13	1.436e^-9	INTRON CG9990
X	1062583	X_1062583_SNP [dm3] X_1168550_SNP [dm6]	T	A	2.112e^-13	1.436e^-9	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9212508	2L_9212508_SNP [dm3] 2L_9212508_SNP [dm6]	C	G	2.114e^-13	1.436e^-9	INTRON tai
2R	12421573	2R_12421573_SNP [dm3] 2R_16534068_SNP [dm6]	C	T	2.114e^-13	1.436e^-9	UPSTREAM loopin-1 DOWNSTREAM Sema-2a INTERGENIC
2R	19147198	2R_19147198_INS [dm3] 2R_23259675_INS [dm6]	T	TGCAAGGCT	2.114e^-13	1.436e^-9	INTERGENIC
2R	19149173	2R_19149173_SNP [dm3] 2R_23261650_SNP [dm6]	G	T	2.114e^-13	1.436e^-9	INTERGENIC
2R	7584946	2R_7584946_SNP [dm3] 2R_11697441_SNP [dm6]	A	T	2.114e^-13	1.436e^-9	UTR_3_PRIME CG13197
2L	20584671	2L_20584671_SNP [dm3] 2L_20584671_SNP [dm6]	T	A	2.117e^-13	1.436e^-9	INTRON CR44909
3L	1372021	3L_1372021_SNP [dm3] 3L_1372021_SNP [dm6]	A	T	2.117e^-13	1.436e^-9	INTRON Ptp61F & 1 other
3L	4562444	3L_4562444_SNP [dm3] 3L_4562444_SNP [dm6]	A	T	2.117e^-13	1.436e^-9	INTRON CG42540
2R	14320712	2R_14320712_SNP [dm3] 2R_18433207_SNP [dm6]	G	C	2.121e^-13	1.436e^-9	INTRON CG30118
3L	4838825	3L_4838825_SNP [dm3] 3L_4838825_SNP [dm6]	A	G	2.123e^-13	1.436e^-9	UTR_5_PRIME CG13707 INTRON CG13707
3L	4838899	3L_4838899_SNP [dm3] 3L_4838899_SNP [dm6]	G	A	2.123e^-13	1.436e^-9	INTRON CG13707
3L	4838936	3L_4838936_SNP [dm3] 3L_4838936_SNP [dm6]	C	T	2.123e^-13	1.436e^-9	UTR_5_PRIME CG13707 INTRON CG13707
3R	23118764	3R_23118764_SNP [dm3] 3R_27293042_SNP [dm6]	T	G	2.123e^-13	1.436e^-9	UPSTREAM CG3348 INTERGENIC
3R	23428663	3R_23428663_SNP [dm3] 3R_27602941_SNP [dm6]	C	A	2.123e^-13	1.436e^-9	SYNONYMOUS_CODING dsd
3R	23428706	3R_23428706_SNP [dm3] 3R_27602984_SNP [dm6]	T	C	2.123e^-13	1.436e^-9	INTRON dsd
3R	25276322	3R_25276322_SNP [dm3] 3R_29450600_SNP [dm6]	G	A	2.123e^-13	1.436e^-9	INTRON Ptp99A
2R	6340251	2R_6340251_SNP [dm3] 2R_10452746_SNP [dm6]	G	A	2.124e^-13	1.436e^-9	UPSTREAM Cyp49a1 INTRON Galphao & 1 other
2R	6340303	2R_6340303_SNP [dm3] 2R_10452798_SNP [dm6]	G	A	2.124e^-13	1.436e^-9	UPSTREAM Cyp49a1 INTRON Galphao & 1 other
2L	20944280	2L_20944280_SNP [dm3] 2L_20944280_SNP [dm6]	G	T	2.130e^-13	1.436e^-9	INTERGENIC
X	20489924	X_20489924_SNP [dm3] X_20618897_SNP [dm6]	G	A	2.143e^-13	1.436e^-9	INTRON RunxA
X	16148660	X_16148660_SNP [dm3] X_16254627_SNP [dm6]	T	G	2.160e^-13	1.436e^-9	UPSTREAM snRNA:U2:14B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17351940	2L_17351940_SNP [dm3] 2L_17351940_SNP [dm6]	C	A	2.191e^-13	1.436e^-9	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13966371	2R_13966371_DEL [dm3] 2R_18078866_DEL [dm6]	GTCATGTTGTATTCCCGTCG...	G	2.191e^-13	1.436e^-9	INTRON CG34386
2R	13974688	2R_13974688_SNP [dm3] 2R_18087183_SNP [dm6]	G	A	2.191e^-13	1.436e^-9	INTRON CG34386
2R	15711130	2R_15711130_SNP [dm3] 2R_19823625_SNP [dm6]	A	T	2.191e^-13	1.436e^-9	INTERGENIC
2R	17152265	2R_17152265_DEL [dm3] 2R_21264760_DEL [dm6]	TT	T	2.191e^-13	1.436e^-9	DOWNSTREAM CG30391 INTRON Rgk3
2R	20949972	2R_20949972_SNP [dm3] 2R_25062449_SNP [dm6]	A	G	2.191e^-13	1.436e^-9	INTRON gsb	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20975894	2R_20975894_SNP [dm3] 2R_25088371_SNP [dm6]	A	T	2.191e^-13	1.436e^-9	INTRON lov
2R	20976691	2R_20976691_SNP [dm3] 2R_25089168_SNP [dm6]	C	T	2.191e^-13	1.436e^-9	INTRON lov	transposable element FlyBase
2R	21000221	2R_21000221_SNP [dm3] 2R_25112698_SNP [dm6]	C	T	2.191e^-13	1.436e^-9	INTRON lov	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2R	21000301	2R_21000301_SNP [dm3] 2R_25112778_SNP [dm6]	T	A	2.191e^-13	1.436e^-9	INTRON lov	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2R	21001667	2R_21001667_SNP [dm3] 2R_25114144_SNP [dm6]	C	T	2.191e^-13	1.436e^-9	INTRON lov	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	2172732	3L_2172732_SNP [dm3] 3L_2172732_SNP [dm6]	C	G	2.191e^-13	1.436e^-9	DOWNSTREAM CG15820 INTRON CR15821
3L	7312288	3L_7312288_SNP [dm3] 3L_7319188_SNP [dm6]	C	T	2.191e^-13	1.436e^-9	UPSTREAM CG8607 INTERGENIC
3L	811406	3L_811406_SNP [dm3] 3L_811406_SNP [dm6]	G	A	2.191e^-13	1.436e^-9	INTERGENIC
X	15275362	X_15275362_SNP [dm3] X_15381329_SNP [dm6]	A	G	2.191e^-13	1.436e^-9	UTR_3_PRIME CG9164
X	20490006	X_20490006_SNP [dm3] X_20618979_SNP [dm6]	A	C	2.191e^-13	1.436e^-9	INTRON RunxA
X	20845846	X_20845846_DEL [dm3] X_20974819_DEL [dm6]	CTTAGC	C	2.191e^-13	1.436e^-9	INTERGENIC
X	5410058	X_5410058_SNP [dm3] X_5516025_SNP [dm6]	T	C	2.191e^-13	1.436e^-9	UPSTREAM CG12730 DOWNSTREAM CR45518 INTERGENIC
2R	8297677	2R_8297677_SNP [dm3] 2R_12410172_SNP [dm6]	C	T	2.576e^-13	1.681e^-9	UPSTREAM CG33627 DOWNSTREAM CG30050 INTRON CG33626
2R	8279432	2R_8279432_SNP [dm3] 2R_12391927_SNP [dm6]	T	C	2.950e^-13	1.906e^-9	UPSTREAM Cpr49Ad INTERGENIC
2R	8283749	2R_8283749_SNP [dm3] 2R_12396244_SNP [dm6]	A	C	2.950e^-13	1.906e^-9	NON_SYNONYMOUS_CODING CG30048
2R	8289310	2R_8289310_SNP [dm3] 2R_12401805_SNP [dm6]	C	T	2.950e^-13	1.906e^-9	UPSTREAM Cpr49Ae INTERGENIC
2L	7436093	2L_7436093_SNP [dm3] 2L_7436093_SNP [dm6]	G	T	3.277e^-13	2.035e^-9	INTERGENIC
3L	4561220	3L_4561220_SNP [dm3] 3L_4561220_SNP [dm6]	G	C	3.278e^-13	2.035e^-9	INTRON CG42540
2L	10369494	2L_10369494_SNP [dm3] 2L_10369494_SNP [dm6]	C	A	3.279e^-13	2.035e^-9	SYNONYMOUS_CODING rho-5	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10369497	2L_10369497_SNP [dm3] 2L_10369497_SNP [dm6]	A	G	3.279e^-13	2.035e^-9	SYNONYMOUS_CODING rho-5	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11530971	2L_11530971_SNP [dm3] 2L_11530971_SNP [dm6]	G	A	3.279e^-13	2.035e^-9	SYNONYMOUS_CODING CG31706 UPSTREAM CG34162 DOWNSTREAM CR42743
2L	5287050	2L_5287050_DEL [dm3] 2L_5287050_DEL [dm6]	TGT	T	3.279e^-13	2.035e^-9	UPSTREAM CR44742 DOWNSTREAM CR44743 INTERGENIC
2R	2852857	2R_2852857_SNP [dm3] 2R_6965352_SNP [dm6]	G	A	3.279e^-13	2.035e^-9	INTRON mim & 1 other
2R	5486202	2R_5486202_SNP [dm3] 2R_9598697_SNP [dm6]	C	A	3.282e^-13	2.035e^-9	SYNONYMOUS_CODING CG30338 INTRON CG1902 & 1 other	TF binding site mE1_TFBS_chinmo
2R	19163050	2R_19163050_SNP [dm3] 2R_23275527_SNP [dm6]	T	C	3.285e^-13	2.035e^-9	START_GAINED ord UTR_5_PRIME ord
2L	16683189	2L_16683189_SNP [dm3] 2L_16683189_SNP [dm6]	C	T	3.288e^-13	2.035e^-9	UTR_3_PRIME CG33552 UPSTREAM CG31807 INTRON grp & 1 other
2L	6821794	2L_6821794_SNP [dm3] 2L_6821794_SNP [dm6]	T	G	3.302e^-13	2.035e^-9	UPSTREAM sens-2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17870092	2R_17870092_SNP [dm3] 2R_21982587_SNP [dm6]	G	C	3.302e^-13	2.035e^-9	INTERGENIC
X	19229748	X_19229748_SNP [dm3] X_19335715_SNP [dm6]	A	G	3.302e^-13	2.035e^-9	INTRON nAChRalpha7
X	12069945	X_12069945_SNP [dm3] X_12175912_SNP [dm6]	A	C	3.303e^-13	2.035e^-9	DOWNSTREAM CG1924 INTRON Ten-a
3R	25494033	3R_25494033_SNP [dm3] 3R_29668311_SNP [dm6]	C	T	3.317e^-13	2.035e^-9	SYNONYMOUS_CODING ppk20 UPSTREAM ppk30	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4055643	2L_4055643_SNP [dm3] 2L_4055643_SNP [dm6]	A	G	3.325e^-13	2.035e^-9	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	16100937	2L_16100937_SNP [dm3] 2L_16100937_SNP [dm6]	T	C	3.397e^-13	2.043e^-9	INTERGENIC
2L	16100973	2L_16100973_SNP [dm3] 2L_16100973_SNP [dm6]	T	C	3.397e^-13	2.043e^-9	INTERGENIC
2R	13973332	2R_13973332_SNP [dm3] 2R_18085827_SNP [dm6]	G	C	3.398e^-13	2.043e^-9	INTRON CG34386
2R	14700304	2R_14700304_SNP [dm3] 2R_18812799_SNP [dm6]	A	T	3.407e^-13	2.043e^-9	INTRON CG15096
2R	19579401	2R_19579401_SNP [dm3] 2R_23691878_SNP [dm6]	T	A	3.407e^-13	2.043e^-9	NON_SYNONYMOUS_CODING CG30183	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25186394	3R_25186394_DEL [dm3] 3R_29360672_DEL [dm6]	AA	A	3.425e^-13	2.043e^-9	INTERGENIC
2R	9364551	2R_9364551_SNP [dm3] 2R_13477046_SNP [dm6]	G	C	3.427e^-13	2.043e^-9	UPSTREAM CG43192 INTRON arr
3R	23126226	3R_23126226_SNP [dm3] 3R_27300504_SNP [dm6]	G	A	3.427e^-13	2.043e^-9	INTRON CG3339
2R	7414267	2R_7414267_SNP [dm3] 2R_11526762_SNP [dm6]	G	A	3.442e^-13	2.046e^-9	SYNONYMOUS_CODING en	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	21121968	2R_21121968_SNP [dm3] 2R_25234445_SNP [dm6]	G	A	3.541e^-13	2.098e^-9	INTRON CG9380
2R	8299380	2R_8299380_SNP [dm3] 2R_12411875_SNP [dm6]	A	T	3.933e^-13	2.323e^-9	DOWNSTREAM CG33627 INTERGENIC
2R	8279814	2R_8279814_SNP [dm3] 2R_12392309_SNP [dm6]	T	C	4.547e^-13	2.677e^-9	UPSTREAM Cpr49Ad INTERGENIC
2R	16643202	2R_16643202_SNP [dm3] 2R_20755697_SNP [dm6]	G	C	5.080e^-13	2.930e^-9	INTERGENIC	TF binding site mE1_TFBS_zfh1
2L	8010435	2L_8010435_SNP [dm3] 2L_8010435_SNP [dm6]	T	G	5.082e^-13	2.930e^-9	UPSTREAM CG12560 & 1 other INTRON CG34010	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	7440271	2L_7440271_SNP [dm3] 2L_7440271_SNP [dm6]	G	T	5.100e^-13	2.930e^-9	UPSTREAM CG5973 INTRON CG5973
2L	13976722	2L_13976722_SNP [dm3] 2L_13976722_SNP [dm6]	C	A	5.109e^-13	2.930e^-9	UTR_5_PRIME NimC1 UPSTREAM NimC1 & 1 other
2L	15404241	2L_15404241_SNP [dm3] 2L_15404241_SNP [dm6]	A	T	5.122e^-13	2.930e^-9	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9164613	2L_9164613_SNP [dm3] 2L_9164613_SNP [dm6]	A	T	5.123e^-13	2.930e^-9	NON_SYNONYMOUS_CODING CG13108 DOWNSTREAM CG32982 & 1 other	TF binding site mE1_TFBS_cad
2R	9260299	2R_9260299_INS [dm3] 2R_13372794_INS [dm6]	A	AAA	5.127e^-13	2.930e^-9	INTERGENIC
2L	20628827	2L_20628827_SNP [dm3] 2L_20628827_SNP [dm6]	A	T	5.132e^-13	2.930e^-9	INTERGENIC
2R	6574450	2R_6574450_SNP [dm3] 2R_10686945_SNP [dm6]	A	G	5.134e^-13	2.930e^-9	INTRON stan
X	12069138	X_12069138_SNP [dm3] X_12175105_SNP [dm6]	A	T	5.134e^-13	2.930e^-9	INTRON Ten-a
3L	483016	3L_483016_DEL [dm3] 3L_483016_DEL [dm6]	GAAGTGATATTAGCAAGG...	G	5.203e^-13	2.960e^-9	INTRON klar
2R	3824665	2R_3824665_SNP [dm3] 2R_7937160_SNP [dm6]	C	G	5.282e^-13	2.965e^-9	DOWNSTREAM drosha INTRON CG8728	TF binding site mE1_TFBS_chinmo
X	6177874	X_6177874_SNP [dm3] X_6283841_SNP [dm6]	C	A	5.283e^-13	2.965e^-9	UPSTREAM CG11700 DOWNSTREAM Top3beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	2852111	2R_2852111_SNP [dm3] 2R_6964606_SNP [dm6]	G	A	5.286e^-13	2.965e^-9	INTRON mim & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	8904322	X_8904322_SNP [dm3] X_9010289_SNP [dm6]	C	T	5.297e^-13	2.965e^-9	INTRON rdgA & 1 other
2L	6771634	2L_6771634_DEL [dm3] 2L_6771634_DEL [dm6]	TT	T	5.311e^-13	2.965e^-9	UPSTREAM CG11321 INTRON CG11321
2L	16100987	2L_16100987_SNP [dm3] 2L_16100987_SNP [dm6]	C	T	5.312e^-13	2.965e^-9	INTERGENIC
X	15898495	X_15898495_DEL [dm3] X_16004462_DEL [dm6]	AACGTATGCAAAATTGTGGG...	A	5.322e^-13	2.965e^-9	INTRON vap	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
X	13329345	X_13329345_DEL [dm3] X_13435312_DEL [dm6]	TT	T	5.443e^-13	2.999e^-9	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14912124	3L_14912124_DEL [dm3] 3L_14919024_DEL [dm6]	CC	C	5.475e^-13	2.999e^-9	INTRON DCX-EMAP
2R	15841805	2R_15841805_SNP [dm3] 2R_19954300_SNP [dm6]	C	A	5.487e^-13	2.999e^-9	NON_SYNONYMOUS_CODING CG44622
2R	20915257	2R_20915257_SNP [dm3] 2R_25027734_SNP [dm6]	A	T	5.503e^-13	2.999e^-9	UTR_5_PRIME uzip
3L	7030787	3L_7030787_SNP [dm3] 3L_7037687_SNP [dm6]	C	G	5.503e^-13	2.999e^-9	INTRON Mp
3L	7035537	3L_7035537_SNP [dm3] 3L_7042437_SNP [dm6]	C	G	5.503e^-13	2.999e^-9	INTRON Mp
X	3205958	X_3205958_SNP [dm3] X_3311925_SNP [dm6]	A	G	5.503e^-13	2.999e^-9	INTRON dnc
X	18600125	X_18600125_SNP [dm3] X_18706092_SNP [dm6]	T	A	5.515e^-13	2.999e^-9	INTERGENIC
3R	21794750	3R_21794750_SNP [dm3] 3R_25969028_SNP [dm6]	G	A	5.528e^-13	2.999e^-9	INTERGENIC
3L	1017077	3L_1017077_SNP [dm3] 3L_1017077_SNP [dm6]	T	C	5.592e^-13	3.024e^-9	INTRON trio
X	5240732	X_5240732_SNP [dm3] X_5346699_SNP [dm6]	T	C	5.735e^-13	3.092e^-9	INTRON SK
2R	7665829	2R_7665829_SNP [dm3] 2R_11778324_SNP [dm6]	A	G	6.030e^-13	3.233e^-9	UPSTREAM CG42493 INTRON ths
X	16302776	X_16302776_SNP [dm3] X_16408743_SNP [dm6]	G	A	6.030e^-13	3.233e^-9	UTR_5_PRIME CG4301 INTRON CG4301
2R	5484106	2R_5484106_SNP [dm3] 2R_9596601_SNP [dm6]	C	T	7.677e^-13	4.046e^-9	SYNONYMOUS_CODING clos INTRON CG30338 & 1 other
2R	5484593	2R_5484593_SNP [dm3] 2R_9597088_SNP [dm6]	C	A	7.677e^-13	4.046e^-9	INTRON CG30338 & 2 others
2R	5485038	2R_5485038_SNP [dm3] 2R_9597533_SNP [dm6]	C	T	7.677e^-13	4.046e^-9	INTRON CG30338 & 2 others	TF binding site mE1_TFBS_chinmo
2R	5487118	2R_5487118_SNP [dm3] 2R_9599613_SNP [dm6]	A	G	7.677e^-13	4.046e^-9	SYNONYMOUS_CODING clos DOWNSTREAM CG30340 & 1 other INTRON CG1902
2R	5487405	2R_5487405_SNP [dm3] 2R_9599900_SNP [dm6]	A	T	7.677e^-13	4.046e^-9	UPSTREAM clos DOWNSTREAM CG30340 & 1 other INTRON CG1902
2R	5487451	2R_5487451_SNP [dm3] 2R_9599946_SNP [dm6]	T	C	7.677e^-13	4.046e^-9	NON_SYNONYMOUS_CODING CG30340 UPSTREAM clos DOWNSTREAM CG30338 INTRON CG1902
2L	11910667	2L_11910667_SNP [dm3] 2L_11910667_SNP [dm6]	G	C	7.924e^-13	4.165e^-9	INTRON Pde1c
2L	7435402	2L_7435402_SNP [dm3] 2L_7435402_SNP [dm6]	T	C	7.947e^-13	4.165e^-9	INTERGENIC
2L	11530951	2L_11530951_SNP [dm3] 2L_11530951_SNP [dm6]	G	C	8.044e^-13	4.204e^-9	NON_SYNONYMOUS_CODING CG31706 UPSTREAM CG34162
2L	1510073	2L_1510073_SNP [dm3] 2L_1510073_SNP [dm6]	C	G	8.088e^-13	4.215e^-9	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	20565197	2L_20565197_INS [dm3] 2L_20565197_INS [dm6]	A	ATTGTTCCCAGGCCCGGCCT...	8.192e^-13	4.257e^-9	INTRON CR45347
2L	6762650	2L_6762650_SNP [dm3] 2L_6762650_SNP [dm6]	T	G	8.255e^-13	4.278e^-9	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	20567448	2L_20567448_SNP [dm3] 2L_20567448_SNP [dm6]	T	C	8.463e^-13	4.374e^-9	INTRON CR45347
2R	2005339	2R_2005339_DEL [dm3] 2R_6117834_DEL [dm6]	TT	T	8.524e^-13	4.384e^-9	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	20950586	2R_20950586_SNP [dm3] 2R_25063063_SNP [dm6]	T	G	8.535e^-13	4.384e^-9	INTRON gsb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
3L	5507599	3L_5507599_SNP [dm3] 3L_5514499_SNP [dm6]	A	C	8.554e^-13	4.384e^-9	INTRON Lkr
2L	3239513	2L_3239513_SNP [dm3] 2L_3239513_SNP [dm6]	T	A	8.692e^-13	4.443e^-9	INTERGENIC
3L	7035949	3L_7035949_SNP [dm3] 3L_7042849_SNP [dm6]	A	G	8.907e^-13	4.540e^-9	INTRON Mp
2R	7665775	2R_7665775_SNP [dm3] 2R_11778270_SNP [dm6]	C	T	9.290e^-13	4.722e^-9	UPSTREAM CG42493 INTRON ths
2R	17236852	2R_17236852_SNP [dm3] 2R_21349347_SNP [dm6]	T	A	9.881e^-13	4.995e^-9	INTRON CG17974
2R	17236925	2R_17236925_SNP [dm3] 2R_21349420_SNP [dm6]	C	T	9.881e^-13	4.995e^-9	SYNONYMOUS_CODING CG17974
2R	3816108	2R_3816108_SNP [dm3] 2R_7928603_SNP [dm6]	C	T	1.014e^-12	5.114e^-9	SYNONYMOUS_CODING CG8791	TF binding site mE1_TFBS_cad
2R	8279246	2R_8279246_DEL [dm3] 2R_12391741_DEL [dm6]	TT	T	1.067e^-12	5.364e^-9	UPSTREAM Cpr49Ad INTERGENIC
2R	8281686	2R_8281686_SNP [dm3] 2R_12394181_SNP [dm6]	T	C	1.105e^-12	5.529e^-9	SYNONYMOUS_CODING Or49a UPSTREAM CG30048
2R	8282415	2R_8282415_SNP [dm3] 2R_12394910_SNP [dm6]	C	T	1.105e^-12	5.529e^-9	UTR_5_PRIME CG30048 DOWNSTREAM Or49a
2R	5493236	2R_5493236_SNP [dm3] 2R_9605731_SNP [dm6]	C	G	1.215e^-12	6.061e^-9	UPSTREAM GstT1 DOWNSTREAM CG1902 EXON CR44285
2L	8007611	2L_8007611_SNP [dm3] 2L_8007611_SNP [dm6]	G	T	1.223e^-12	6.082e^-9	UPSTREAM Spn28Dc DOWNSTREAM CG12560 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26487735	3R_26487735_SNP [dm3] 3R_30662013_SNP [dm6]	T	A	1.252e^-12	6.213e^-9	INTERGENIC
2L	1328810	2L_1328810_DEL [dm3] 2L_1328810_DEL [dm6]	GT	G	1.278e^-12	6.271e^-9	UPSTREAM a5 INTERGENIC
2L	1328816	2L_1328816_SNP [dm3] 2L_1328816_SNP [dm6]	T	A	1.278e^-12	6.271e^-9	UPSTREAM a5 INTERGENIC
2L	6999115	2L_6999115_SNP [dm3] 2L_6999115_SNP [dm6]	T	A	1.280e^-12	6.271e^-9	INTRON uif
3R	25169578	3R_25169578_SNP [dm3] 3R_29343856_SNP [dm6]	G	A	1.284e^-12	6.271e^-9	INTERGENIC
2L	12149317	2L_12149317_SNP [dm3] 2L_12149317_SNP [dm6]	T	G	1.284e^-12	6.271e^-9	INTRON CG31760
2L	9147129	2L_9147129_SNP [dm3] 2L_9147129_SNP [dm6]	A	C	1.284e^-12	6.271e^-9	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23430561	3R_23430561_SNP [dm3] 3R_27604839_SNP [dm6]	T	A	1.304e^-12	6.352e^-9	INTRON dsd
2L	1020987	2L_1020987_SNP [dm3] 2L_1020987_SNP [dm6]	C	T	1.323e^-12	6.424e^-9	INTRON IA-2
2R	17392613	2R_17392613_DEL [dm3] 2R_21505108_DEL [dm6]	ACATA	A	1.329e^-12	6.439e^-9	INTRON MESK2
3L	18278336	3L_18278336_SNP [dm3] 3L_18285236_SNP [dm6]	T	C	1.366e^-12	6.552e^-9	INTERGENIC
3L	18304131	3L_18304131_SNP [dm3] 3L_18311031_SNP [dm6]	T	A	1.366e^-12	6.552e^-9	INTERGENIC
3L	18342706	3L_18342706_SNP [dm3] 3L_18349606_SNP [dm6]	T	C	1.366e^-12	6.552e^-9	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18343785	3L_18343785_SNP [dm3] 3L_18350685_SNP [dm6]	T	C	1.366e^-12	6.552e^-9	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17117728	2R_17117728_SNP [dm3] 2R_21230223_SNP [dm6]	C	T	1.497e^-12	7.159e^-9	INTRON ASPP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17236892	2R_17236892_SNP [dm3] 2R_21349387_SNP [dm6]	A	G	1.504e^-12	7.177e^-9	SYNONYMOUS_CODING CG17974
2R	8280629	2R_8280629_SNP [dm3] 2R_12393124_SNP [dm6]	A	G	1.533e^-12	7.294e^-9	UPSTREAM Or49a INTERGENIC
2L	15389822	2L_15389822_SNP [dm3] 2L_15389822_SNP [dm6]	A	T	1.570e^-12	7.451e^-9	INTERGENIC
2L	10939723	2L_10939723_SNP [dm3] 2L_10939723_SNP [dm6]	C	T	1.918e^-12	9.082e^-9	INTRON dpr2
3R	26487929	3R_26487929_SNP [dm3] 3R_30662207_SNP [dm6]	T	C	1.941e^-12	9.164e^-9	INTERGENIC
2L	5797679	2L_5797679_SNP [dm3] 2L_5797679_SNP [dm6]	A	T	1.955e^-12	9.210e^-9	INTRON CG9171
2L	14532468	2L_14532468_DEL [dm3] 2L_14532468_DEL [dm6]	CTCAC	C	1.977e^-12	9.286e^-9	DOWNSTREAM CR44852 INTERGENIC	TF binding site mE1_TFBS_cad
3L	489908	3L_489908_INS [dm3] 3L_489908_INS [dm6]	G	GGAAAG	1.985e^-12	9.300e^-9	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	19565943	3R_19565943_SNP [dm3] 3R_23740221_SNP [dm6]	T	A	2.019e^-12	9.436e^-9	INTRON Hmgcr
2L	4861500	2L_4861500_DEL [dm3] 2L_4861500_DEL [dm6]	CTTGTAAGGAC...	C	2.029e^-12	9.461e^-9	INTRON pog
2R	19194373	2R_19194373_DEL [dm3] 2R_23306850_DEL [dm6]	GCAGCAGCAG	G	2.051e^-12	9.529e^-9	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	17958096	X_17958096_SNP [dm3] X_18064063_SNP [dm6]	A	G	2.054e^-12	9.529e^-9	UPSTREAM Sh & 1 other INTERGENIC
2L	1328815	2L_1328815_SNP [dm3] 2L_1328815_SNP [dm6]	T	A	2.062e^-12	9.542e^-9	UPSTREAM a5 INTERGENIC
2L	17360671	2L_17360671_SNP [dm3] 2L_17360671_SNP [dm6]	G	A	2.071e^-12	9.562e^-9	UPSTREAM CR44346 INTERGENIC
2L	4669424	2L_4669424_SNP [dm3] 2L_4669424_SNP [dm6]	G	A	2.118e^-12	9.753e^-9	INTERGENIC
3R	25152367	3R_25152367_SNP [dm3] 3R_29326645_SNP [dm6]	G	A	2.131e^-12	9.765e^-9	INTERGENIC
3R	25152373	3R_25152373_SNP [dm3] 3R_29326651_SNP [dm6]	T	A	2.131e^-12	9.765e^-9	INTERGENIC
3L	18270786	3L_18270786_SNP [dm3] 3L_18277686_SNP [dm6]	T	G	2.145e^-12	9.805e^-9	INTERGENIC
3L	7352554	3L_7352554_SNP [dm3] 3L_7359454_SNP [dm6]	A	T	2.216e^-12	1.010e^-8	INTRON pst	TF binding site mE1_TFBS_chinmo
3R	26603702	3R_26603702_SNP [dm3] 3R_30777980_SNP [dm6]	T	G	2.259e^-12	1.027e^-8	INTRON zfh1	TF binding site mE1_TFBS_chinmo
2L	13155496	2L_13155496_SNP [dm3] 2L_13155496_SNP [dm6]	C	T	2.263e^-12	1.027e^-8	INTERGENIC
X	12136037	X_12136037_SNP [dm3] X_12242004_SNP [dm6]	C	T	2.379e^-12	1.077e^-8	INTRON Ten-a
2L	9473260	2L_9473260_SNP [dm3] 2L_9473260_SNP [dm6]	T	G	3.135e^-12	1.416e^-8	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	5742358	2L_5742358_DEL [dm3] 2L_5742358_DEL [dm6]	TT	T	3.191e^-12	1.437e^-8	INTRON CG11030	TF binding site mE1_TFBS_inv
2L	5711587	2L_5711587_SNP [dm3] 2L_5711587_SNP [dm6]	G	A	3.227e^-12	1.450e^-8	UPSTREAM CG7236 INTRON CG7236
3L	17438063	3L_17438063_SNP [dm3] 3L_17444963_SNP [dm6]	G	A	3.302e^-12	1.479e^-8	INTRON CG18265	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16241152	2L_16241152_SNP [dm3] 2L_16241152_SNP [dm6]	A	G	3.306e^-12	1.479e^-8	UTR_3_PRIME CG42817 UPSTREAM CG42818 DOWNSTREAM CG42817
3L	18301713	3L_18301713_SNP [dm3] 3L_18308613_SNP [dm6]	T	A	3.321e^-12	1.481e^-8	INTERGENIC
3L	18491615	3L_18491615_SNP [dm3] 3L_18498515_SNP [dm6]	T	C	3.330e^-12	1.482e^-8	INTRON AstC-R2
3L	18338952	3L_18338952_SNP [dm3] 3L_18345852_SNP [dm6]	A	G	3.474e^-12	1.542e^-8	INTERGENIC
2L	5797545	2L_5797545_SNP [dm3] 2L_5797545_SNP [dm6]	T	G	4.632e^-12	2.052e^-8	INTRON CG9171
2R	2859945	2R_2859945_SNP [dm3] 2R_6972440_SNP [dm6]	C	A	4.850e^-12	2.143e^-8	SYNONYMOUS_CODING Cyp6u1 UPSTREAM mim & 1 other	TF binding site mE1_TFBS_cad
2R	834523	2R_834523_SNP [dm3] 2R_4947018_SNP [dm6]	T	A	5.198e^-12	2.288e^-8	INTRON Ir41a	transposable element FlyBase
X	20419320	X_20419320_SNP [dm3] X_20548293_SNP [dm6]	A	C	5.203e^-12	2.288e^-8	INTRON RunxB
3L	4516784	3L_4516784_SNP [dm3] 3L_4516784_SNP [dm6]	T	C	5.267e^-12	2.311e^-8	INTRON Tie	TF binding site mE1_TFBS_inv
3L	18358798	3L_18358798_SNP [dm3] 3L_18365698_SNP [dm6]	C	T	5.347e^-12	2.341e^-8	INTERGENIC
2R	21139885	2R_21139885_SNP [dm3] 2R_25252362_SNP [dm6]	T	G	5.404e^-12	2.360e^-8	UPSTREAM CG30428 INTRON CG9380 & 1 other	transposable element FlyBase
3R	22952981	3R_22952981_SNP [dm3] 3R_27127259_SNP [dm6]	A	C	6.425e^-12	2.799e^-8	NON_SYNONYMOUS_CODING CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16242306	2L_16242306_SNP [dm3] 2L_16242306_SNP [dm6]	G	A	7.028e^-12	3.055e^-8	NON_SYNONYMOUS_CODING CG42818 DOWNSTREAM CG42817
2R	13803597	2R_13803597_SNP [dm3] 2R_17916092_SNP [dm6]	A	G	7.238e^-12	3.139e^-8	INTRON Elk
2L	17168170	2L_17168170_SNP [dm3] 2L_17168170_SNP [dm6]	G	C	7.339e^-12	3.175e^-8	INTRON beat-IIIa & 1 other
3R	25139198	3R_25139198_SNP [dm3] 3R_29313476_SNP [dm6]	C	T	7.704e^-12	3.325e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	13973236	2L_13973236_SNP [dm3] 2L_13973236_SNP [dm6]	C	T	7.743e^-12	3.335e^-8	UTR_3_PRIME NimC1 UPSTREAM He DOWNSTREAM NimC1
X	21338810	X_21338810_INS [dm3] X_21467783_INS [dm6]	A	AA	8.003e^-12	3.439e^-8	UPSTREAM CR45507 DOWNSTREAM CR45508 INTERGENIC
2L	12197055	2L_12197055_SNP [dm3] 2L_12197055_SNP [dm6]	G	C	8.088e^-12	3.467e^-8	INTRON aret	TF binding site mE1_TFBS_inv
3L	2370112	3L_2370112_SNP [dm3] 3L_2370112_SNP [dm6]	G	A	1.126e^-11	4.817e^-8	SYNONYMOUS_CODING CG1317	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11038540	X_11038540_SNP [dm3] X_11144507_SNP [dm6]	T	C	1.145e^-11	4.886e^-8	DOWNSTREAM CG15202 & 1 other INTRON CG15201	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1387703	2R_1387703_SNP [dm3] 2R_5500198_SNP [dm6]	C	A	1.230e^-11	5.237e^-8	INTRON CG30438
3R	19728301	3R_19728301_INS [dm3] 3R_23902579_INS [dm6]	C	CATAC	1.282e^-11	5.445e^-8	INTRON sba
2R	9223614	2R_9223614_DEL [dm3] 2R_13336109_DEL [dm6]	AA	A	1.433e^-11	6.075e^-8	INTRON CR44206
X	5996137	X_5996137_SNP [dm3] X_6102104_SNP [dm6]	C	G	1.563e^-11	6.610e^-8	SYNONYMOUS_CODING Nep1	TF binding site mE1_TFBS_chinmo
2R	3612596	2R_3612596_SNP [dm3] 2R_7725091_SNP [dm6]	T	G	1.572e^-11	6.634e^-8	INTRON CG18812
3L	23760387	3L_23760387_SNP [dm3] 3L_23767287_SNP [dm6]	C	T	1.648e^-11	6.923e^-8	INTERGENIC	transposable element FlyBase
3L	23760593	3L_23760593_SNP [dm3] 3L_23767493_SNP [dm6]	A	C	1.648e^-11	6.923e^-8	INTERGENIC	transposable element FlyBase
X	19301080	X_19301080_SNP [dm3] X_19407047_SNP [dm6]	C	G	1.702e^-11	7.131e^-8	INTRON kek5
2L	1355283	2L_1355283_SNP [dm3] 2L_1355283_SNP [dm6]	G	A	1.715e^-11	7.155e^-8	SYNONYMOUS_CODING CG5565 UPSTREAM CG31924
2L	1355311	2L_1355311_SNP [dm3] 2L_1355311_SNP [dm6]	A	T	1.715e^-11	7.155e^-8	NON_SYNONYMOUS_CODING CG5565 UPSTREAM CG31924
X	8228641	X_8228641_DEL [dm3] X_8334608_DEL [dm6]	TT	T	1.853e^-11	7.653e^-8	INTRON nAChRalpha3
3R	26921982	3R_26921982_SNP [dm3] 3R_31096260_SNP [dm6]	A	T	1.867e^-11	7.653e^-8	INTRON CG11317
3R	26922139	3R_26922139_SNP [dm3] 3R_31096417_SNP [dm6]	G	A	1.867e^-11	7.653e^-8	INTRON CG11317
3R	26922244	3R_26922244_SNP [dm3] 3R_31096522_SNP [dm6]	T	C	1.867e^-11	7.653e^-8	INTRON CG11317
3R	26923306	3R_26923306_SNP [dm3] 3R_31097584_SNP [dm6]	G	T	1.867e^-11	7.653e^-8	UPSTREAM CG11317 INTERGENIC
3R	26925674	3R_26925674_SNP [dm3] 3R_31099952_SNP [dm6]	T	A	1.867e^-11	7.653e^-8	NON_SYNONYMOUS_CODING CG15553
3R	26927609	3R_26927609_SNP [dm3] 3R_31101887_SNP [dm6]	T	G	1.867e^-11	7.653e^-8	UPSTREAM CG15553 INTERGENIC
3R	26927691	3R_26927691_SNP [dm3] 3R_31101969_SNP [dm6]	T	C	1.867e^-11	7.653e^-8	UPSTREAM CG15553 INTERGENIC
3L	4308405	3L_4308405_SNP [dm3] 3L_4308405_SNP [dm6]	G	A	1.898e^-11	7.762e^-8	UPSTREAM dyl INTERGENIC
2R	12480748	2R_12480748_SNP [dm3] 2R_16593243_SNP [dm6]	C	T	2.029e^-11	8.280e^-8	INTRON CG8306	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	26922257	3R_26922257_SNP [dm3] 3R_31096535_SNP [dm6]	T	A	2.066e^-11	8.409e^-8	INTRON CG11317
3L	2576418	3L_2576418_SNP [dm3] 3L_2576418_SNP [dm6]	A	T	2.079e^-11	8.443e^-8	INTRON msn
2L	17162693	2L_17162693_SNP [dm3] 2L_17162693_SNP [dm6]	A	T	2.420e^-11	9.810e^-8	INTRON beat-IIIa & 1 other
2L	1355693	2L_1355693_SNP [dm3] 2L_1355693_SNP [dm6]	G	A	2.580e^-11	1.044e^-7	UPSTREAM CG31924 INTRON CG5565
3R	26926283	3R_26926283_SNP [dm3] 3R_31100561_SNP [dm6]	C	A	2.702e^-11	1.090e^-7	INTRON CG15553
3R	26918486	3R_26918486_SNP [dm3] 3R_31092764_SNP [dm6]	T	A	2.711e^-11	1.092e^-7	INTRON CG11317
3L	4308480	3L_4308480_SNP [dm3] 3L_4308480_SNP [dm6]	A	T	2.750e^-11	1.105e^-7	UPSTREAM dyl INTERGENIC
3R	26923909	3R_26923909_SNP [dm3] 3R_31098187_SNP [dm6]	G	A	2.756e^-11	1.105e^-7	UPSTREAM CG11317 DOWNSTREAM CG15553 INTERGENIC
3R	26918563	3R_26918563_SNP [dm3] 3R_31092841_SNP [dm6]	C	A	2.789e^-11	1.111e^-7	INTRON CG11317
3R	26918590	3R_26918590_SNP [dm3] 3R_31092868_SNP [dm6]	T	G	2.789e^-11	1.111e^-7	INTRON CG11317
3R	26927650	3R_26927650_SNP [dm3] 3R_31101928_SNP [dm6]	G	A	2.789e^-11	1.111e^-7	UPSTREAM CG15553 INTERGENIC
2R	12480763	2R_12480763_SNP [dm3] 2R_16593258_SNP [dm6]	G	A	2.825e^-11	1.123e^-7	INTRON CG8306	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	19310063	X_19310063_SNP [dm3] X_19416030_SNP [dm6]	G	C	2.937e^-11	1.165e^-7	INTRON kek5
2R	12318733	2R_12318733_INS [dm3] 2R_16431228_INS [dm6]	T	TT	3.139e^-11	1.242e^-7	UTR_3_PRIME Sema-2b DOWNSTREAM Sema-2b	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	1207770	2R_1207770_SNP [dm3] 2R_5320265_SNP [dm6]	C	T	3.355e^-11	1.325e^-7	SYNONYMOUS_CODING sxc
3R	23081744	3R_23081744_SNP [dm3] 3R_27256022_SNP [dm6]	C	T	3.372e^-11	1.329e^-7	DOWNSTREAM woc INTRON TfIIA-L	TF binding site BDTNP1_TFBS_z
2L	8582476	2L_8582476_INS [dm3] 2L_8582476_INS [dm6]	ACA	TTTTT	3.881e^-11	1.526e^-7	INTRON Sema-1a
2R	13023236	2R_13023236_SNP [dm3] 2R_17135731_SNP [dm6]	T	G	4.259e^-11	1.672e^-7	UPSTREAM Gbp DOWNSTREAM CG11400 EXON CR44391
2L	19253264	2L_19253264_SNP [dm3] 2L_19253264_SNP [dm6]	T	C	4.523e^-11	1.760e^-7	INTERGENIC
2L	19253335	2L_19253335_SNP [dm3] 2L_19253335_SNP [dm6]	G	A	4.523e^-11	1.760e^-7	INTERGENIC
2L	19253343	2L_19253343_SNP [dm3] 2L_19253343_SNP [dm6]	G	A	4.523e^-11	1.760e^-7	INTERGENIC
2L	19253347	2L_19253347_SNP [dm3] 2L_19253347_SNP [dm6]	T	A	4.523e^-11	1.760e^-7	INTERGENIC
2L	19177132	2L_19177132_SNP [dm3] 2L_19177132_SNP [dm6]	A	T	4.622e^-11	1.795e^-7	UTR_3_PRIME brat INTRON brat
2R	6869905	2R_6869905_SNP [dm3] 2R_10982400_SNP [dm6]	A	T	4.639e^-11	1.798e^-7	UTR_3_PRIME luna DOWNSTREAM luna
3R	24726954	3R_24726954_SNP [dm3] 3R_28901232_SNP [dm6]	T	C	4.744e^-11	1.835e^-7	INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18212489	2L_18212489_SNP [dm3] 2L_18212489_SNP [dm6]	T	C	4.811e^-11	1.853e^-7	INTRON CG42750
2L	18212680	2L_18212680_SNP [dm3] 2L_18212680_SNP [dm6]	T	G	4.811e^-11	1.853e^-7	INTRON CG42750
3R	12027744	3R_12027744_SNP [dm3] 3R_16202022_SNP [dm6]	C	A	4.836e^-11	1.859e^-7	INTRON CG6126	TF binding site mE1_TFBS_inv
2R	11886156	2R_11886156_SNP [dm3] 2R_15998651_SNP [dm6]	T	G	4.858e^-11	1.863e^-7	INTRON ATPCL
2L	2536528	2L_2536528_SNP [dm3] 2L_2536528_SNP [dm6]	A	T	4.890e^-11	1.872e^-7	INTERGENIC
3L	5619064	3L_5619064_SNP [dm3] 3L_5625964_SNP [dm6]	A	C	5.002e^-11	1.911e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1206320	2R_1206320_INS [dm3] 2R_5318815_INS [dm6]	A	AGTTGTTAGA	5.066e^-11	1.924e^-7	INTRON sxc	transposable element FlyBase
2R	1348342	2R_1348342_SNP [dm3] 2R_5460837_SNP [dm6]	A	T	5.066e^-11	1.924e^-7	INTERGENIC
2R	1387763	2R_1387763_SNP [dm3] 2R_5500258_SNP [dm6]	G	C	5.066e^-11	1.924e^-7	INTRON CG30438
X	19285883	X_19285883_SNP [dm3] X_19391850_SNP [dm6]	A	G	5.238e^-11	1.985e^-7	INTRON kek5
X	10302117	X_10302117_SNP [dm3] X_10408084_SNP [dm6]	A	C	5.347e^-11	2.022e^-7	UTR_3_PRIME flw DOWNSTREAM flw
X	14906477	X_14906477_SNP [dm3] X_15012444_SNP [dm6]	G	C	5.720e^-11	2.159e^-7	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
3R	23364642	3R_23364642_SNP [dm3] 3R_27538920_SNP [dm6]	G	C	6.775e^-11	2.546e^-7	EXON CR44288
3R	23364655	3R_23364655_SNP [dm3] 3R_27538933_SNP [dm6]	G	A	6.775e^-11	2.546e^-7	EXON CR44288
2L	18212717	2L_18212717_SNP [dm3] 2L_18212717_SNP [dm6]	T	A	6.918e^-11	2.595e^-7	INTRON CG42750
2R	17674523	2R_17674523_SNP [dm3] 2R_21787018_SNP [dm6]	G	A	6.991e^-11	2.617e^-7	INTERGENIC
3R	26750995	3R_26750995_SNP [dm3] 3R_30925273_SNP [dm6]	G	T	7.071e^-11	2.642e^-7	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi
3R	10113339	3R_10113339_SNP [dm3] 3R_14287617_SNP [dm6]	G	A	7.142e^-11	2.663e^-7	UPSTREAM trx & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1345197	2L_1345197_SNP [dm3] 2L_1345197_SNP [dm6]	C	T	7.302e^-11	2.701e^-7	DOWNSTREAM CR45005 & 2 others INTERGENIC
3R	19925178	3R_19925178_SNP [dm3] 3R_24099456_SNP [dm6]	C	A	7.302e^-11	2.701e^-7	INTRON 4EHP
3R	19925179	3R_19925179_SNP [dm3] 3R_24099457_SNP [dm6]	C	T	7.302e^-11	2.701e^-7	INTRON 4EHP
3R	19925207	3R_19925207_SNP [dm3] 3R_24099485_SNP [dm6]	G	A	7.302e^-11	2.701e^-7	INTRON 4EHP
2L	15517388	2L_15517388_DEL [dm3] 2L_15517388_DEL [dm6]	AGG	TT	7.342e^-11	2.710e^-7	UPSTREAM CR44864 INTERGENIC
2R	10248610	2R_10248610_SNP [dm3] 2R_14361105_SNP [dm6]	A	T	7.391e^-11	2.716e^-7	UPSTREAM Arc1 & 1 other EXON CR10102	TF binding site mE1_TFBS_chinmo
2L	17374696	2L_17374696_SNP [dm3] 2L_17374696_SNP [dm6]	G	T	7.397e^-11	2.716e^-7	SYNONYMOUS_CODING Lrch	TF binding site mE1_TFBS_cad
3L	20252214	3L_20252214_SNP [dm3] 3L_20259114_SNP [dm6]	A	G	7.401e^-11	2.716e^-7	UPSTREAM rdgC INTRON rdgC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	23950502	3L_23950502_SNP [dm3] 3L_23957402_SNP [dm6]	A	C	7.556e^-11	2.767e^-7	INTRON CG40470
2R	14685485	2R_14685485_SNP [dm3] 2R_18797980_SNP [dm6]	G	T	7.884e^-11	2.876e^-7	SYNONYMOUS_CODING l_2_08717	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26740549	3R_26740549_SNP [dm3] 3R_30914827_SNP [dm6]	G	T	7.884e^-11	2.876e^-7	INTRON Ptx1	TF binding site mE1_TFBS_HSA
3R	26922691	3R_26922691_SNP [dm3] 3R_31096969_SNP [dm6]	T	C	8.039e^-11	2.923e^-7	NON_SYNONYMOUS_CODING CG11317
3R	25087705	3R_25087705_SNP [dm3] 3R_29261983_SNP [dm6]	C	T	8.043e^-11	2.923e^-7	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	1279083	2L_1279083_SNP [dm3] 2L_1279083_SNP [dm6]	A	G	8.221e^-11	2.982e^-7	INTRON robo3
2L	13155448	2L_13155448_SNP [dm3] 2L_13155448_SNP [dm6]	T	C	8.358e^-11	3.025e^-7	INTERGENIC
2R	10873031	2R_10873031_SNP [dm3] 2R_14985526_SNP [dm6]	T	A	8.373e^-11	3.025e^-7	INTRON pcs	TF binding site mE1_TFBS_cad
3R	26918475	3R_26918475_SNP [dm3] 3R_31092753_SNP [dm6]	A	T	8.445e^-11	3.045e^-7	INTRON CG11317
2R	8873806	2R_8873806_SNP [dm3] 2R_12986301_SNP [dm6]	T	C	8.492e^-11	3.056e^-7	DOWNSTREAM CR44339 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	17391276	2R_17391276_DEL [dm3] 2R_21503771_DEL [dm6]	GATGTTTAACTTTCCTG...	G	8.512e^-11	3.057e^-7	INTRON MESK2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	12136060	X_12136060_SNP [dm3] X_12242027_SNP [dm6]	C	T	8.600e^-11	3.083e^-7	INTRON Ten-a
3R	12027632	3R_12027632_SNP [dm3] 3R_16201910_SNP [dm6]	C	T	9.395e^-11	3.361e^-7	INTRON CG6126	TF binding site mE1_TFBS_inv
3R	12022910	3R_12022910_INS [dm3] 3R_16197188_INS [dm6]	A	AGTTC	9.803e^-11	3.500e^-7	UTR_3_PRIME sra DOWNSTREAM CG6126
3R	24948950	3R_24948950_SNP [dm3] 3R_29123228_SNP [dm6]	C	T	9.866e^-11	3.516e^-7	UPSTREAM CG11880 & 1 other INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4311447	3L_4311447_SNP [dm3] 3L_4311447_SNP [dm6]	T	A	1.018e^-10	3.622e^-7	INTERGENIC
3R	11962361	3R_11962361_SNP [dm3] 3R_16136639_SNP [dm6]	T	C	1.036e^-10	3.677e^-7	INTRON Sb
2R	11790155	2R_11790155_DEL [dm3] 2R_15902650_DEL [dm6]	AAGTTA	A	1.039e^-10	3.682e^-7	INTRON sli	TF binding site BDTNP1_TFBS_twi
2L	9375642	2L_9375642_SNP [dm3] 2L_9375642_SNP [dm6]	C	G	1.041e^-10	3.683e^-7	INTRON Shawl
2L	13739945	2L_13739945_INS [dm3] 2L_13739945_INS [dm6]	A	AAA	1.045e^-10	3.690e^-7	INTERGENIC
2L	6748374	2L_6748374_SNP [dm3] 2L_6748374_SNP [dm6]	C	T	1.062e^-10	3.741e^-7	UPSTREAM CG44271 INTRON CG11221
2R	16744229	2R_16744229_SNP [dm3] 2R_20856724_SNP [dm6]	A	G	1.089e^-10	3.830e^-7	INTERGENIC
3R	22434268	3R_22434268_SNP [dm3] 3R_26608546_SNP [dm6]	G	T	1.138e^-10	3.996e^-7	DOWNSTREAM CR44951 INTERGENIC
X	14923979	X_14923979_SNP [dm3] X_15029946_SNP [dm6]	A	G	1.207e^-10	4.230e^-7	INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2741615	2R_2741615_SNP [dm3] 2R_6854110_SNP [dm6]	G	T	1.216e^-10	4.246e^-7	INTERGENIC
2R	2742043	2R_2742043_SNP [dm3] 2R_6854538_SNP [dm6]	A	T	1.216e^-10	4.246e^-7	INTERGENIC
3L	4309368	3L_4309368_SNP [dm3] 3L_4309368_SNP [dm6]	G	C	1.222e^-10	4.256e^-7	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4308675	3L_4308675_SNP [dm3] 3L_4308675_SNP [dm6]	A	T	1.248e^-10	4.340e^-7	UPSTREAM dyl INTERGENIC
3R	22551358	3R_22551358_DEL [dm3] 3R_26725636_DEL [dm6]	TTTCC	T	1.259e^-10	4.355e^-7	UPSTREAM CG14244 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_run mE1_TFBS_Ubx
3R	22551364	3R_22551364_SNP [dm3] 3R_26725642_SNP [dm6]	G	A	1.259e^-10	4.355e^-7	UPSTREAM CG14244 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_run mE1_TFBS_Ubx
3R	22551366	3R_22551366_SNP [dm3] 3R_26725644_SNP [dm6]	A	T	1.259e^-10	4.355e^-7	UPSTREAM CG14244 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_run mE1_TFBS_Ubx
2L	15533108	2L_15533108_SNP [dm3] 2L_15533108_SNP [dm6]	G	A	1.271e^-10	4.386e^-7	INTERGENIC
2R	14301385	2R_14301385_SNP [dm3] 2R_18413880_SNP [dm6]	C	T	1.289e^-10	4.441e^-7	UPSTREAM Dp1 & 1 other INTRON Dp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	23088243	3R_23088243_INS [dm3] 3R_27262521_INS [dm6]	T	TC	1.396e^-10	4.800e^-7	DOWNSTREAM CR44049 INTRON woc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	1374907	2R_1374907_SNP [dm3] 2R_5487402_SNP [dm6]	C	T	1.438e^-10	4.934e^-7	INTRON CG30440
3R	10574947	3R_10574947_SNP [dm3] 3R_14749225_SNP [dm6]	T	G	1.463e^-10	5.013e^-7	UPSTREAM jvl & 1 other INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	8322877	2L_8322877_SNP [dm3] 2L_8322877_SNP [dm6]	G	A	1.553e^-10	5.306e^-7	SYNONYMOUS_CODING CG7781	TF binding site mE1_TFBS_cad
2L	13294700	2L_13294700_INS [dm3] 2L_13294700_INS [dm6]	A	AA	1.554e^-10	5.306e^-7	UPSTREAM CG31729 INTRON CG31729
2R	17945133	2R_17945133_SNP [dm3] 2R_22057628_SNP [dm6]	C	A	1.560e^-10	5.316e^-7	SYNONYMOUS_CODING CG13500	TF binding site mE1_TFBS_cad
2L	11671637	2L_11671637_SNP [dm3] 2L_11671637_SNP [dm6]	G	T	1.571e^-10	5.343e^-7	INTERGENIC
3L	7031427	3L_7031427_DEL [dm3] 3L_7038327_DEL [dm6]	AA	A	1.584e^-10	5.378e^-7	INTRON Mp
3R	26604210	3R_26604210_SNP [dm3] 3R_30778488_SNP [dm6]	A	G	1.615e^-10	5.461e^-7	INTRON zfh1
3R	26604212	3R_26604212_SNP [dm3] 3R_30778490_SNP [dm6]	A	G	1.615e^-10	5.461e^-7	INTRON zfh1
3L	3769915	3L_3769915_SNP [dm3] 3L_3769915_SNP [dm6]	C	A	1.672e^-10	5.647e^-7	INTRON CG32264
2L	13142961	2L_13142961_SNP [dm3] 2L_13142961_SNP [dm6]	A	T	1.730e^-10	5.830e^-7	UPSTREAM CG9928 DOWNSTREAM CG16978 INTERGENIC
3R	9964759	3R_9964759_SNP [dm3] 3R_14139037_SNP [dm6]	T	A	1.768e^-10	5.947e^-7	INTERGENIC
2R	1184181	2R_1184181_SNP [dm3] 2R_5296676_SNP [dm6]	G	T	1.778e^-10	5.969e^-7	DOWNSTREAM d4 INTERGENIC	transposable element FlyBase
3L	15769949	3L_15769949_SNP [dm3] 3L_15776849_SNP [dm6]	T	A	1.845e^-10	6.186e^-7	INTERGENIC
2L	4554215	2L_4554215_INS [dm3] 2L_4554215_INS [dm6]	A	AT	1.897e^-10	6.347e^-7	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23093881	3R_23093881_SNP [dm3] 3R_27268159_SNP [dm6]	G	A	2.054e^-10	6.823e^-7	SYNONYMOUS_CODING l_3_mbt	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	25393651	3R_25393651_DEL [dm3] 3R_29567929_DEL [dm6]	CTAG	C	2.054e^-10	6.823e^-7	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	25393656	3R_25393656_INS [dm3] 3R_29567934_INS [dm6]	A	AT	2.054e^-10	6.823e^-7	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	19191031	X_19191031_SNP [dm3] X_19296998_SNP [dm6]	T	G	2.054e^-10	6.823e^-7	INTRON CG8034	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	24032454	3L_24032454_SNP [dm3] 3L_24039354_SNP [dm6]	G	A	2.076e^-10	6.873e^-7	INTERGENIC
3R	26603693	3R_26603693_SNP [dm3] 3R_30777971_SNP [dm6]	G	A	2.076e^-10	6.873e^-7	INTRON zfh1	TF binding site mE1_TFBS_chinmo
2R	14308833	2R_14308833_SNP [dm3] 2R_18421328_SNP [dm6]	G	C	2.102e^-10	6.947e^-7	UPSTREAM CG5174 DOWNSTREAM Dp1 INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	12009353	3R_12009353_SNP [dm3] 3R_16183631_SNP [dm6]	A	G	2.116e^-10	6.968e^-7	INTRON CG8927
3R	12009355	3R_12009355_SNP [dm3] 3R_16183633_SNP [dm6]	A	T	2.116e^-10	6.968e^-7	INTRON CG8927
2L	7488647	2L_7488647_SNP [dm3] 2L_7488647_SNP [dm6]	C	G	2.328e^-10	7.652e^-7	INTRON Ziz
2R	1146881	2R_1146881_SNP [dm3] 2R_5259376_SNP [dm6]	G	T	2.341e^-10	7.680e^-7	INTRON d4	transposable element FlyBase
X	12989207	X_12989207_SNP [dm3] X_13095174_SNP [dm6]	C	G	2.399e^-10	7.857e^-7	NON_SYNONYMOUS_CODING CG2200 DOWNSTREAM CG43313
3R	11347732	3R_11347732_SNP [dm3] 3R_15522010_SNP [dm6]	G	A	2.457e^-10	8.034e^-7	INTERGENIC
3R	25988222	3R_25988222_SNP [dm3] 3R_30162500_SNP [dm6]	G	T	2.525e^-10	8.242e^-7	INTERGENIC
2L	15523538	2L_15523538_SNP [dm3] 2L_15523538_SNP [dm6]	C	T	2.540e^-10	8.275e^-7	EXON CR43761
3L	15771996	3L_15771996_SNP [dm3] 3L_15778896_SNP [dm6]	G	A	2.546e^-10	8.281e^-7	INTERGENIC
X	12897939	X_12897939_SNP [dm3] X_13003906_SNP [dm6]	C	A	2.804e^-10	8.882e^-7	DOWNSTREAM CG15719 INTRON rad
3R	23093779	3R_23093779_SNP [dm3] 3R_27268057_SNP [dm6]	G	A	2.846e^-10	8.882e^-7	SYNONYMOUS_CODING l_3_mbt	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	26907772	3R_26907772_SNP [dm3] 3R_31082050_SNP [dm6]	C	T	2.857e^-10	8.882e^-7	NON_SYNONYMOUS_CODING Sox100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8177871	X_8177871_INS [dm3] X_8283838_INS [dm6]	T	AA	2.857e^-10	8.882e^-7	INTRON nAChRalpha3
X	10717159	X_10717159_SNP [dm3] X_10823126_SNP [dm6]	A	G	2.869e^-10	8.882e^-7	UPSTREAM Imp INTRON Imp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26897769	3R_26897769_DEL [dm3] 3R_31072047_DEL [dm6]	TGATAATATAT...	A	2.879e^-10	8.882e^-7	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26897802	3R_26897802_SNP [dm3] 3R_31072080_SNP [dm6]	C	A	2.879e^-10	8.882e^-7	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26898346	3R_26898346_SNP [dm3] 3R_31072624_SNP [dm6]	T	C	2.879e^-10	8.882e^-7	INTRON Sox100B
3R	26898497	3R_26898497_SNP [dm3] 3R_31072775_SNP [dm6]	G	A	2.879e^-10	8.882e^-7	INTRON Sox100B
3R	26898503	3R_26898503_SNP [dm3] 3R_31072781_SNP [dm6]	T	C	2.879e^-10	8.882e^-7	INTRON Sox100B
3R	26908165	3R_26908165_SNP [dm3] 3R_31082443_SNP [dm6]	G	T	2.879e^-10	8.882e^-7	NON_SYNONYMOUS_CODING Sox100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26909196	3R_26909196_SNP [dm3] 3R_31083474_SNP [dm6]	C	T	2.879e^-10	8.882e^-7	DOWNSTREAM Sox100B INTERGENIC
3R	26909637	3R_26909637_SNP [dm3] 3R_31083915_SNP [dm6]	T	A	2.879e^-10	8.882e^-7	DOWNSTREAM Sox100B INTERGENIC
3R	26910795	3R_26910795_SNP [dm3] 3R_31085073_SNP [dm6]	A	G	2.879e^-10	8.882e^-7	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	26910837	3R_26910837_SNP [dm3] 3R_31085115_SNP [dm6]	G	C	2.879e^-10	8.882e^-7	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26911003	3R_26911003_SNP [dm3] 3R_31085281_SNP [dm6]	C	A	2.879e^-10	8.882e^-7	INTERGENIC
3R	26911288	3R_26911288_SNP [dm3] 3R_31085566_SNP [dm6]	A	G	2.879e^-10	8.882e^-7	INTERGENIC
3R	26911292	3R_26911292_SNP [dm3] 3R_31085570_SNP [dm6]	G	A	2.879e^-10	8.882e^-7	INTERGENIC
3R	26912049	3R_26912049_SNP [dm3] 3R_31086327_SNP [dm6]	C	T	2.879e^-10	8.882e^-7	INTERGENIC
3R	26912086	3R_26912086_DEL [dm3] 3R_31086364_DEL [dm6]	TCGTTT	GA	2.879e^-10	8.882e^-7	INTERGENIC
3R	26912809	3R_26912809_SNP [dm3] 3R_31087087_SNP [dm6]	T	C	2.879e^-10	8.882e^-7	INTERGENIC
3R	26913717	3R_26913717_INS [dm3] 3R_31087995_INS [dm6]	C	AT	2.879e^-10	8.882e^-7	INTERGENIC
3R	26913721	3R_26913721_INS [dm3] 3R_31087999_INS [dm6]	T	TGAAATA	2.879e^-10	8.882e^-7	INTERGENIC
3R	26913737	3R_26913737_SNP [dm3] 3R_31088015_SNP [dm6]	A	T	2.879e^-10	8.882e^-7	INTERGENIC
3R	26913740	3R_26913740_SNP [dm3] 3R_31088018_SNP [dm6]	A	G	2.879e^-10	8.882e^-7	INTERGENIC
3R	26913741	3R_26913741_INS [dm3] 3R_31088019_INS [dm6]	T	TA	2.879e^-10	8.882e^-7	INTERGENIC
3R	26913743	3R_26913743_SNP [dm3] 3R_31088021_SNP [dm6]	A	T	2.879e^-10	8.882e^-7	INTERGENIC
3R	26913748	3R_26913748_SNP [dm3] 3R_31088026_SNP [dm6]	A	T	2.879e^-10	8.882e^-7	INTERGENIC
3R	26913874	3R_26913874_SNP [dm3] 3R_31088152_SNP [dm6]	C	A	2.879e^-10	8.882e^-7	INTERGENIC
3R	26915712	3R_26915712_SNP [dm3] 3R_31089990_SNP [dm6]	T	A	2.879e^-10	8.882e^-7	DOWNSTREAM CG11317 INTERGENIC
3R	26916100	3R_26916100_SNP [dm3] 3R_31090378_SNP [dm6]	A	G	2.879e^-10	8.882e^-7	DOWNSTREAM CG11317 INTERGENIC
3R	26899425	3R_26899425_INS [dm3] 3R_31073703_INS [dm6]	A	AGTCTATATCTATATCAGAT...	2.892e^-10	8.898e^-7	INTRON Sox100B
2R	3815828	2R_3815828_SNP [dm3] 2R_7928323_SNP [dm6]	C	A	2.894e^-10	8.898e^-7	INTRON CG8791	TF binding site mE1_TFBS_cad
3R	12009296	3R_12009296_SNP [dm3] 3R_16183574_SNP [dm6]	G	T	2.928e^-10	8.989e^-7	INTRON CG8927
3R	367083	3R_367083_SNP [dm3] 3R_4541361_SNP [dm6]	C	T	3.034e^-10	9.268e^-7	UTR_5_PRIME Mur82C INTRON CG34357
3R	424786	3R_424786_SNP [dm3] 3R_4599064_SNP [dm6]	A	G	3.034e^-10	9.268e^-7	INTRON CR44317	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	456059	3R_456059_SNP [dm3] 3R_4630337_SNP [dm6]	A	T	3.034e^-10	9.268e^-7	NON_SYNONYMOUS_CODING 5-HT2A
2L	16384098	2L_16384098_SNP [dm3] 2L_16384098_SNP [dm6]	C	T	3.072e^-10	9.370e^-7	INTERGENIC
X	4301976	X_4301976_DEL [dm3] X_4407943_DEL [dm6]	AA	A	3.142e^-10	9.566e^-7	INTRON CR32773
2L	9211531	2L_9211531_SNP [dm3] 2L_9211531_SNP [dm6]	G	T	3.197e^-10	9.720e^-7	INTRON tai	TF binding site BDTNP1_TFBS_dl
X	16156173	X_16156173_SNP [dm3] X_16262140_SNP [dm6]	G	C	3.276e^-10	9.942e^-7	INTERGENIC
3L	7992023	3L_7992023_SNP [dm3] 3L_7998923_SNP [dm6]	A	C	3.327e^-10	1.008e^-6	INTRON nmo
3L	1885329	3L_1885329_SNP [dm3] 3L_1885329_SNP [dm6]	G	A	3.343e^-10	1.011e^-6	UPSTREAM Tmhs & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	12440454	2R_12440454_SNP [dm3] 2R_16552949_SNP [dm6]	G	C	3.457e^-10	1.042e^-6	INTRON Syn2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	25988230	3R_25988230_SNP [dm3] 3R_30162508_SNP [dm6]	A	C	3.457e^-10	1.042e^-6	INTERGENIC
3R	26893061	3R_26893061_SNP [dm3] 3R_31067339_SNP [dm6]	C	A	3.519e^-10	1.059e^-6	INTRON Sox100B
2R	2738467	2R_2738467_SNP [dm3] 2R_6850962_SNP [dm6]	T	G	3.570e^-10	1.073e^-6	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	22767651	3R_22767651_SNP [dm3] 3R_26941929_SNP [dm6]	C	T	3.618e^-10	1.086e^-6	SYNONYMOUS_CODING sda	TF binding site mE1_TFBS_cad
2L	8584813	2L_8584813_DEL [dm3] 2L_8584813_DEL [dm6]	GG	G	3.675e^-10	1.101e^-6	INTRON Sema-1a
3L	15768926	3L_15768926_SNP [dm3] 3L_15775826_SNP [dm6]	T	A	3.714e^-10	1.111e^-6	INTERGENIC	TF binding site mE1_TFBS_inv
2R	10963284	2R_10963284_SNP [dm3] 2R_15075779_SNP [dm6]	C	G	3.767e^-10	1.121e^-6	INTERGENIC
3L	6529108	3L_6529108_SNP [dm3] 3L_6536008_SNP [dm6]	C	A	3.767e^-10	1.121e^-6	INTRON sfl
3L	7048345	3L_7048345_SNP [dm3] 3L_7055245_SNP [dm6]	G	T	3.767e^-10	1.121e^-6	INTERGENIC
3R	26898269	3R_26898269_SNP [dm3] 3R_31072547_SNP [dm6]	G	A	3.776e^-10	1.122e^-6	INTRON Sox100B
3L	4308619	3L_4308619_SNP [dm3] 3L_4308619_SNP [dm6]	C	T	3.845e^-10	1.139e^-6	UPSTREAM dyl INTERGENIC
3L	4308626	3L_4308626_SNP [dm3] 3L_4308626_SNP [dm6]	T	A	3.845e^-10	1.139e^-6	UPSTREAM dyl INTERGENIC
2L	16276229	2L_16276229_SNP [dm3] 2L_16276229_SNP [dm6]	A	T	3.899e^-10	1.152e^-6	INTRON crp	TF binding site BDTNP1_TFBS_dl
X	12897930	X_12897930_SNP [dm3] X_13003897_SNP [dm6]	G	A	3.902e^-10	1.152e^-6	DOWNSTREAM CG15719 INTRON rad
3R	26916644	3R_26916644_SNP [dm3] 3R_31090922_SNP [dm6]	C	A	3.924e^-10	1.156e^-6	UTR_3_PRIME CG11317
3R	26914384	3R_26914384_SNP [dm3] 3R_31088662_SNP [dm6]	T	A	3.932e^-10	1.156e^-6	INTERGENIC
3R	26919068	3R_26919068_SNP [dm3] 3R_31093346_SNP [dm6]	T	A	3.932e^-10	1.156e^-6	INTRON CG11317
X	19690003	X_19690003_SNP [dm3] X_19795970_SNP [dm6]	C	T	3.941e^-10	1.156e^-6	INTERGENIC
2L	10730958	2L_10730958_SNP [dm3] 2L_10730958_SNP [dm6]	T	C	3.947e^-10	1.156e^-6	SYNONYMOUS_CODING CG17118 DOWNSTREAM CG6443 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26914322	3R_26914322_SNP [dm3] 3R_31088600_SNP [dm6]	A	T	3.995e^-10	1.166e^-6	INTERGENIC
3R	26908325	3R_26908325_SNP [dm3] 3R_31082603_SNP [dm6]	C	T	4.003e^-10	1.166e^-6	SYNONYMOUS_CODING Sox100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13060892	X_13060892_SNP [dm3] X_13166859_SNP [dm6]	T	A	4.005e^-10	1.166e^-6	INTRON CG34411
2R	3813997	2R_3813997_SNP [dm3] 2R_7926492_SNP [dm6]	A	T	4.012e^-10	1.166e^-6	UPSTREAM CG8791 INTERGENIC
2R	3814398	2R_3814398_SNP [dm3] 2R_7926893_SNP [dm6]	G	A	4.012e^-10	1.166e^-6	UPSTREAM CG8791 INTRON CG8791
2R	2786890	2R_2786890_SNP [dm3] 2R_6899385_SNP [dm6]	A	T	4.034e^-10	1.171e^-6	INTRON CG30158
2L	6118811	2L_6118811_SNP [dm3] 2L_6118811_SNP [dm6]	G	A	4.190e^-10	1.214e^-6	SYNONYMOUS_CODING CG31642 INTRON stai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	10442472	2R_10442472_SNP [dm3] 2R_14554967_SNP [dm6]	C	T	4.208e^-10	1.218e^-6	UPSTREAM CG43919 INTRON ttv
3R	26899371	3R_26899371_SNP [dm3] 3R_31073649_SNP [dm6]	A	G	4.294e^-10	1.231e^-6	INTRON Sox100B
3R	26911403	3R_26911403_SNP [dm3] 3R_31085681_SNP [dm6]	A	G	4.294e^-10	1.231e^-6	INTERGENIC
3R	26911419	3R_26911419_SNP [dm3] 3R_31085697_SNP [dm6]	G	A	4.294e^-10	1.231e^-6	INTERGENIC
3R	26915370	3R_26915370_SNP [dm3] 3R_31089648_SNP [dm6]	C	T	4.294e^-10	1.231e^-6	INTERGENIC
3R	26915391	3R_26915391_SNP [dm3] 3R_31089669_SNP [dm6]	T	C	4.294e^-10	1.231e^-6	INTERGENIC
3R	26915425	3R_26915425_SNP [dm3] 3R_31089703_SNP [dm6]	A	G	4.294e^-10	1.231e^-6	INTERGENIC
2R	9536314	2R_9536314_SNP [dm3] 2R_13648809_SNP [dm6]	C	T	4.478e^-10	1.282e^-6	INTRON fas
X	7474205	X_7474205_SNP [dm3] X_7580172_SNP [dm6]	G	A	4.579e^-10	1.309e^-6	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	10535053	2L_10535053_SNP [dm3] 2L_10535053_SNP [dm6]	T	C	4.645e^-10	1.326e^-6	SYNONYMOUS_CODING CG18302
2L	12166481	2L_12166481_SNP [dm3] 2L_12166481_SNP [dm6]	G	A	4.805e^-10	1.362e^-6	SYNONYMOUS_CODING ZnT33D UTR_3_PRIME ZnT33D INTRON CG31760
2L	12166495	2L_12166495_SNP [dm3] 2L_12166495_SNP [dm6]	A	G	4.805e^-10	1.362e^-6	NON_SYNONYMOUS_CODING ZnT33D UTR_3_PRIME ZnT33D INTRON CG31760
2L	15433147	2L_15433147_SNP [dm3] 2L_15433147_SNP [dm6]	G	A	4.821e^-10	1.362e^-6	UPSTREAM CG4161 INTERGENIC
2L	15433162	2L_15433162_SNP [dm3] 2L_15433162_SNP [dm6]	G	C	4.821e^-10	1.362e^-6	UPSTREAM CG4161 INTERGENIC
3L	3675379	3L_3675379_SNP [dm3] 3L_3675379_SNP [dm6]	A	G	4.829e^-10	1.362e^-6	INTERGENIC
3L	3675390	3L_3675390_SNP [dm3] 3L_3675390_SNP [dm6]	C	T	4.829e^-10	1.362e^-6	INTERGENIC
3L	3675394	3L_3675394_SNP [dm3] 3L_3675394_SNP [dm6]	G	C	4.829e^-10	1.362e^-6	INTERGENIC
3R	23163549	3R_23163549_INS [dm3] 3R_27337827_INS [dm6]	A	ATA	4.831e^-10	1.362e^-6	INTERGENIC
2L	6922526	2L_6922526_SNP [dm3] 2L_6922526_SNP [dm6]	G	C	5.167e^-10	1.453e^-6	INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	6720985	2R_6720985_SNP [dm3] 2R_10833480_SNP [dm6]	C	T	5.171e^-10	1.453e^-6	INTRON CG12344
2L	9737929	2L_9737929_SNP [dm3] 2L_9737929_SNP [dm6]	C	T	5.183e^-10	1.455e^-6	DOWNSTREAM CG13117 INTRON Nckx30C
3R	26892778	3R_26892778_SNP [dm3] 3R_31067056_SNP [dm6]	C	T	5.249e^-10	1.471e^-6	INTRON Sox100B
3L	15769113	3L_15769113_SNP [dm3] 3L_15776013_SNP [dm6]	A	T	5.450e^-10	1.525e^-6	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15585686	2L_15585686_SNP [dm3] 2L_15585686_SNP [dm6]	A	G	5.687e^-10	1.589e^-6	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17148430	2R_17148430_SNP [dm3] 2R_21260925_SNP [dm6]	C	T	5.778e^-10	1.610e^-6	INTRON Rgk3
3R	26912026	3R_26912026_SNP [dm3] 3R_31086304_SNP [dm6]	A	T	5.791e^-10	1.610e^-6	INTERGENIC
X	18874562	X_18874562_DEL [dm3] X_18980529_DEL [dm6]	TCTT	T	5.791e^-10	1.610e^-6	INTRON CG43759
3R	25209641	3R_25209641_SNP [dm3] 3R_29383919_SNP [dm6]	A	T	5.799e^-10	1.610e^-6	INTRON Ptp99A
3R	23770164	3R_23770164_SNP [dm3] 3R_27944442_SNP [dm6]	G	A	5.862e^-10	1.623e^-6	INTRON mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	23770189	3R_23770189_SNP [dm3] 3R_27944467_SNP [dm6]	T	C	5.862e^-10	1.623e^-6	INTRON mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	7440097	2R_7440097_SNP [dm3] 2R_11552592_SNP [dm6]	A	G	5.906e^-10	1.633e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14062204	X_14062204_SNP [dm3] X_14168171_SNP [dm6]	G	A	6.045e^-10	1.669e^-6	INTERGENIC
2L	5306233	2L_5306233_SNP [dm3] 2L_5306233_SNP [dm6]	T	C	6.266e^-10	1.727e^-6	INTRON vri	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18944058	2R_18944058_SNP [dm3] 2R_23056535_SNP [dm6]	C	A	6.353e^-10	1.749e^-6	INTRON CG44252
3L	15785433	3L_15785433_SNP [dm3] 3L_15792333_SNP [dm6]	A	G	6.363e^-10	1.749e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	15467924	2R_15467924_SNP [dm3] 2R_19580419_SNP [dm6]	A	C	6.471e^-10	1.776e^-6	INTRON sm
3R	26792974	3R_26792974_SNP [dm3] 3R_30967252_SNP [dm6]	T	A	6.617e^-10	1.813e^-6	DOWNSTREAM 5-HT7 INTERGENIC
2L	20565736	2L_20565736_SNP [dm3] 2L_20565736_SNP [dm6]	G	A	6.627e^-10	1.813e^-6	INTRON CR45347
X	11842465	X_11842465_SNP [dm3] X_11948432_SNP [dm6]	T	C	6.701e^-10	1.831e^-6	INTRON cac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	19648737	2R_19648737_SNP [dm3] 2R_23761214_SNP [dm6]	G	A	6.804e^-10	1.853e^-6	INTRON CG9850
2L	13281429	2L_13281429_SNP [dm3] 2L_13281429_SNP [dm6]	A	C	6.804e^-10	1.853e^-6	SYNONYMOUS_CODING CG44085 INTRON CG44085
2L	8585174	2L_8585174_SNP [dm3] 2L_8585174_SNP [dm6]	G	A	6.960e^-10	1.893e^-6	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl
2L	6151556	2L_6151556_SNP [dm3] 2L_6151556_SNP [dm6]	T	C	7.110e^-10	1.931e^-6	UPSTREAM Muc26B INTERGENIC
2L	3781612	2L_3781612_SNP [dm3] 2L_3781612_SNP [dm6]	T	G	7.264e^-10	1.970e^-6	INTRON bowl
X	14901890	X_14901890_SNP [dm3] X_15007857_SNP [dm6]	G	C	7.537e^-10	2.041e^-6	UTR_3_PRIME eag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17723453	2L_17723453_SNP [dm3] 2L_17723453_SNP [dm6]	A	T	8.105e^-10	2.190e^-6	INTRON CadN
2R	17721309	2R_17721309_SNP [dm3] 2R_21833804_SNP [dm6]	T	C	8.109e^-10	2.190e^-6	UPSTREAM CG34040 DOWNSTREAM CG4363 INTERGENIC
3R	26866237	3R_26866237_SNP [dm3] 3R_31040515_SNP [dm6]	C	T	8.319e^-10	2.243e^-6	INTRON CanA1
3R	23828872	3R_23828872_INS [dm3] 3R_28003150_INS [dm6]	C	CGTCGTCC	8.374e^-10	2.255e^-6	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	7440039	2R_7440039_SNP [dm3] 2R_11552534_SNP [dm6]	T	C	8.455e^-10	2.272e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5773039	3L_5773039_SNP [dm3] 3L_5779939_SNP [dm6]	A	C	8.479e^-10	2.272e^-6	UPSTREAM PGRP-LD & 2 others DOWNSTREAM CR45026 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2R	2777155	2R_2777155_SNP [dm3] 2R_6889650_SNP [dm6]	A	G	8.482e^-10	2.272e^-6	INTERGENIC	TF binding site mE1_TFBS_cad
2L	17403473	2L_17403473_SNP [dm3] 2L_17403473_SNP [dm6]	A	T	8.486e^-10	2.272e^-6	INTRON CLIP-190
X	10717281	X_10717281_SNP [dm3] X_10823248_SNP [dm6]	T	G	8.593e^-10	2.287e^-6	UPSTREAM Imp INTRON Imp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	10717282	X_10717282_INS [dm3] X_10823249_INS [dm6]	T	TA	8.593e^-10	2.287e^-6	UPSTREAM Imp INTRON Imp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	10717294	X_10717294_SNP [dm3] X_10823261_SNP [dm6]	C	A	8.593e^-10	2.287e^-6	UPSTREAM Imp INTRON Imp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	10717299	X_10717299_SNP [dm3] X_10823266_SNP [dm6]	T	A	8.593e^-10	2.287e^-6	UPSTREAM Imp INTRON Imp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	360148	3R_360148_SNP [dm3] 3R_4534426_SNP [dm6]	T	C	8.742e^-10	2.323e^-6	NON_SYNONYMOUS_CODING CG34357 DOWNSTREAM CG31526
2R	9411241	2R_9411241_SNP [dm3] 2R_13523736_SNP [dm6]	C	T	8.954e^-10	2.376e^-6	DOWNSTREAM CG13331 INTRON Vmat
3L	11503727	3L_11503727_SNP [dm3] 3L_11510627_SNP [dm6]	G	A	9.031e^-10	2.393e^-6	UPSTREAM CG33272 DOWNSTREAM Sgs7 INTERGENIC
3R	26893185	3R_26893185_SNP [dm3] 3R_31067463_SNP [dm6]	G	C	9.084e^-10	2.404e^-6	INTRON Sox100B
3R	26866266	3R_26866266_SNP [dm3] 3R_31040544_SNP [dm6]	C	G	9.102e^-10	2.405e^-6	INTRON CanA1
2R	12443070	2R_12443070_SNP [dm3] 2R_16555565_SNP [dm6]	T	A	9.135e^-10	2.411e^-6	INTRON Syn2
2R	9411256	2R_9411256_SNP [dm3] 2R_13523751_SNP [dm6]	T	A	9.194e^-10	2.423e^-6	DOWNSTREAM CG13331 INTRON Vmat
3L	5011640	3L_5011640_SNP [dm3] 3L_5011640_SNP [dm6]	G	A	9.957e^-10	2.620e^-6	NON_SYNONYMOUS_CODING CG12027 INTRON Con
2L	11000979	2L_11000979_SNP [dm3] 2L_11000979_SNP [dm6]	A	T	9.975e^-10	2.621e^-6	UTR_5_PRIME aub INTRON aub
2L	16368486	2L_16368486_SNP [dm3] 2L_16368486_SNP [dm6]	T	C	1.010e^-9	2.649e^-6	INTERGENIC
3R	25283915	3R_25283915_SNP [dm3] 3R_29458193_SNP [dm6]	A	G	1.014e^-9	2.656e^-6	DOWNSTREAM CR44022 INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	15863567	2L_15863567_SNP [dm3] 2L_15863567_SNP [dm6]	C	G	1.022e^-9	2.675e^-6	EXON CR42791
2L	15553751	2L_15553751_SNP [dm3] 2L_15553751_SNP [dm6]	C	T	1.056e^-9	2.760e^-6	INTRON kek3
2L	16998195	2L_16998195_SNP [dm3] 2L_16998195_SNP [dm6]	C	T	1.093e^-9	2.852e^-6	UPSTREAM CR45356 & 1 other INTERGENIC
3R	26803194	3R_26803194_SNP [dm3] 3R_30977472_SNP [dm6]	G	T	1.111e^-9	2.896e^-6	UTR_5_PRIME 5-HT7 INTRON 5-HT7
X	12897964	X_12897964_SNP [dm3] X_13003931_SNP [dm6]	G	C	1.136e^-9	2.956e^-6	DOWNSTREAM CG15719 INTRON rad
3R	15068912	3R_15068912_SNP [dm3] 3R_19243190_SNP [dm6]	A	C	1.160e^-9	3.015e^-6	INTRON unc79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17168508	2L_17168508_SNP [dm3] 2L_17168508_SNP [dm6]	C	G	1.169e^-9	3.030e^-6	INTRON beat-IIIa & 1 other
2L	17168523	2L_17168523_SNP [dm3] 2L_17168523_SNP [dm6]	T	C	1.169e^-9	3.030e^-6	INTRON beat-IIIa & 1 other
3R	16772664	3R_16772664_DEL [dm3] 3R_20946942_DEL [dm6]	ACACAGAAACACTAAGCACC...	A	1.211e^-9	3.133e^-6	INTERGENIC
X	5193210	X_5193210_SNP [dm3] X_5299177_SNP [dm6]	T	A	1.244e^-9	3.215e^-6	INTRON CG42749
X	10717195	X_10717195_SNP [dm3] X_10823162_SNP [dm6]	A	T	1.256e^-9	3.241e^-6	UPSTREAM Imp INTRON Imp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9411233	2R_9411233_SNP [dm3] 2R_13523728_SNP [dm6]	A	T	1.309e^-9	3.372e^-6	DOWNSTREAM CG13331 INTRON Vmat
X	5414283	X_5414283_SNP [dm3] X_5520250_SNP [dm6]	G	A	1.345e^-9	3.460e^-6	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19155673	3R_19155673_SNP [dm3] 3R_23329951_SNP [dm6]	A	G	1.381e^-9	3.548e^-6	INTRON pnt
2L	5269055	2L_5269055_SNP [dm3] 2L_5269055_SNP [dm6]	C	T	1.403e^-9	3.595e^-6	SPLICE_SITE_REGION Cyp4ac3 SYNONYMOUS_CODING Cyp4ac3 DOWNSTREAM Cyp4ac2 INTRON tkv
X	8900037	X_8900037_SNP [dm3] X_9006004_SNP [dm6]	C	A	1.403e^-9	3.595e^-6	INTRON rdgA & 1 other
3L	646064	3L_646064_SNP [dm3] 3L_646064_SNP [dm6]	C	A	1.431e^-9	3.662e^-6	INTERGENIC
2R	8294683	2R_8294683_SNP [dm3] 2R_12407178_SNP [dm6]	G	A	1.443e^-9	3.678e^-6	UPSTREAM Cpr49Ag DOWNSTREAM Cpr49Af INTERGENIC
2R	8294915	2R_8294915_SNP [dm3] 2R_12407410_SNP [dm6]	C	A	1.443e^-9	3.678e^-6	UPSTREAM Cpr49Ag DOWNSTREAM Cpr49Af INTERGENIC
2R	8296164	2R_8296164_SNP [dm3] 2R_12408659_SNP [dm6]	G	C	1.443e^-9	3.678e^-6	UPSTREAM CG30050 DOWNSTREAM Cpr49Ag INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16368461	2L_16368461_SNP [dm3] 2L_16368461_SNP [dm6]	C	G	1.510e^-9	3.842e^-6	INTERGENIC
2R	9559254	2R_9559254_DEL [dm3] 2R_13671749_DEL [dm6]	TGG	T	1.525e^-9	3.875e^-6	DOWNSTREAM CG18368 INTRON fas EXON CR45031
3R	17732833	3R_17732833_SNP [dm3] 3R_21907111_SNP [dm6]	G	A	1.527e^-9	3.876e^-6	UTR_3_PRIME CG6678
2L	16012469	2L_16012469_SNP [dm3] 2L_16012469_SNP [dm6]	T	C	1.577e^-9	3.997e^-6	INTRON beat-Ic
2R	17306601	2R_17306601_SNP [dm3] 2R_21419096_SNP [dm6]	T	C	1.641e^-9	4.154e^-6	INTRON Sdc
3R	22505008	3R_22505008_SNP [dm3] 3R_26679286_SNP [dm6]	T	C	1.659e^-9	4.193e^-6	INTRON beat-VII	TF binding site mE1_TFBS_chinmo
3R	12009244	3R_12009244_SNP [dm3] 3R_16183522_SNP [dm6]	G	C	1.754e^-9	4.427e^-6	INTRON CG8927
X	10717182	X_10717182_SNP [dm3] X_10823149_SNP [dm6]	A	G	1.843e^-9	4.645e^-6	UPSTREAM Imp INTRON Imp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	491706	3L_491706_SNP [dm3] 3L_491706_SNP [dm6]	A	G	1.903e^-9	4.790e^-6	UPSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17370030	2L_17370030_SNP [dm3] 2L_17370030_SNP [dm6]	A	T	1.929e^-9	4.850e^-6	UTR_3_PRIME Lrch INTRON Lrch
2R	8301035	2R_8301035_SNP [dm3] 2R_12413530_SNP [dm6]	G	A	1.953e^-9	4.895e^-6	UPSTREAM Cpr49Ah INTERGENIC
2R	17017797	2R_17017797_SNP [dm3] 2R_21130292_SNP [dm6]	G	A	1.955e^-9	4.895e^-6	SYNONYMOUS_CODING Magi DOWNSTREAM mago	TF binding site mE1_TFBS_sens
2R	17017854	2R_17017854_SNP [dm3] 2R_21130349_SNP [dm6]	A	G	1.955e^-9	4.895e^-6	DOWNSTREAM mago INTRON Magi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2370063	3L_2370063_SNP [dm3] 3L_2370063_SNP [dm6]	T	A	2.118e^-9	5.296e^-6	INTRON CG1317	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5269081	2L_5269081_SNP [dm3] 2L_5269081_SNP [dm6]	C	T	2.126e^-9	5.309e^-6	NON_SYNONYMOUS_CODING Cyp4ac3 DOWNSTREAM Cyp4ac2 INTRON tkv
3R	25541680	3R_25541680_SNP [dm3] 3R_29715958_SNP [dm6]	A	C	2.129e^-9	5.310e^-6	UPSTREAM Dup99B DOWNSTREAM Obp99d & 1 other INTERGENIC	TF binding site mE1_TFBS_zfh1
3R	26912915	3R_26912915_SNP [dm3] 3R_31087193_SNP [dm6]	C	T	2.185e^-9	5.442e^-6	INTERGENIC	TF binding site mE1_TFBS_sbb
3R	26691134	3R_26691134_DEL [dm3] 3R_30865412_DEL [dm6]	AA	A	2.263e^-9	5.629e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	7542849	X_7542849_SNP [dm3] X_7648816_SNP [dm6]	A	C	2.309e^-9	5.721e^-6	INTRON ct
X	7543345	X_7543345_SNP [dm3] X_7649312_SNP [dm6]	T	A	2.309e^-9	5.721e^-6	INTRON ct	TF binding site BDTNP1_TFBS_twi
X	7543969	X_7543969_DEL [dm3] X_7649936_DEL [dm6]	CG	C	2.309e^-9	5.721e^-6	INTRON ct
3R	24470260	3R_24470260_SNP [dm3] 3R_28644538_SNP [dm6]	C	T	2.340e^-9	5.788e^-6	INTERGENIC
2R	14412912	2R_14412912_SNP [dm3] 2R_18525407_SNP [dm6]	T	A	2.369e^-9	5.853e^-6	UTR_3_PRIME CG43066
2L	5269051	2L_5269051_SNP [dm3] 2L_5269051_SNP [dm6]	T	C	2.467e^-9	6.088e^-6	SPLICE_SITE_REGION Cyp4ac3 DOWNSTREAM Cyp4ac2 INTRON tkv & 1 other
3L	24054677	3L_24054677_SNP [dm3] 3L_24061577_SNP [dm6]	A	T	2.599e^-9	6.404e^-6	INTERGENIC
3R	26716869	3R_26716869_DEL [dm3] 3R_30891147_DEL [dm6]	CC	C	2.602e^-9	6.404e^-6	INTERGENIC
2L	17373397	2L_17373397_SNP [dm3] 2L_17373397_SNP [dm6]	G	A	2.618e^-9	6.435e^-6	SYNONYMOUS_CODING Lrch	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18090533	2R_18090533_DEL [dm3] 2R_22203028_DEL [dm6]	TAATA	T	2.650e^-9	6.505e^-6	UPSTREAM Swim DOWNSTREAM CG3292 EXON CR45376
2R	8280421	2R_8280421_SNP [dm3] 2R_12392916_SNP [dm6]	C	G	2.718e^-9	6.663e^-6	UPSTREAM Or49a INTERGENIC
2L	3675085	2L_3675085_SNP [dm3] 2L_3675085_SNP [dm6]	A	G	2.724e^-9	6.669e^-6	INTRON CG34340
2R	14717804	2R_14717804_SNP [dm3] 2R_18830299_SNP [dm6]	T	A	2.799e^-9	6.844e^-6	UPSTREAM CG15082 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16242502	2L_16242502_SNP [dm3] 2L_16242502_SNP [dm6]	A	T	2.805e^-9	6.849e^-6	NON_SYNONYMOUS_CODING CG42818 DOWNSTREAM CG42817
2L	10956718	2L_10956718_SNP [dm3] 2L_10956718_SNP [dm6]	G	A	2.936e^-9	7.160e^-6	INTRON dpr2
3R	26913329	3R_26913329_SNP [dm3] 3R_31087607_SNP [dm6]	C	T	3.270e^-9	7.957e^-6	INTERGENIC
2R	1387721	2R_1387721_SNP [dm3] 2R_5500216_SNP [dm6]	A	G	3.272e^-9	7.957e^-6	INTRON CG30438
2L	10956381	2L_10956381_SNP [dm3] 2L_10956381_SNP [dm6]	C	T	3.279e^-9	7.965e^-6	INTRON dpr2
2R	8535464	2R_8535464_SNP [dm3] 2R_12647959_SNP [dm6]	C	G	3.306e^-9	8.020e^-6	UTR_5_PRIME CG8785
2L	16242584	2L_16242584_SNP [dm3] 2L_16242584_SNP [dm6]	C	G	3.527e^-9	8.544e^-6	SYNONYMOUS_CODING CG42818
3L	18288674	3L_18288674_DEL [dm3] 3L_18295574_DEL [dm6]	TAT	T	3.550e^-9	8.588e^-6	INTRON CR43306	TF binding site mE1_TFBS_Kr
2L	10956354	2L_10956354_SNP [dm3] 2L_10956354_SNP [dm6]	A	G	3.619e^-9	8.743e^-6	INTRON dpr2
2R	1100956	2R_1100956_DEL [dm3] 2R_5213451_DEL [dm6]	GTAGTG	G	3.657e^-9	8.824e^-6	INTRON Nipped-A	transposable element FlyBase
2R	1078087	2R_1078087_SNP [dm3] 2R_5190582_SNP [dm6]	C	T	3.694e^-9	8.902e^-6	INTRON Nipped-A	transposable element FlyBase
3R	24704601	3R_24704601_SNP [dm3] 3R_28878879_SNP [dm6]	C	T	3.912e^-9	9.414e^-6	SYNONYMOUS_CODING CG14523 INTRON CG33203
X	7473319	X_7473319_SNP [dm3] X_7579286_SNP [dm6]	A	T	4.215e^-9	1.013e^-5	INTERGENIC	regulatory region REDfly_CRMs
3R	26921195	3R_26921195_SNP [dm3] 3R_31095473_SNP [dm6]	G	T	4.425e^-9	1.062e^-5	INTRON CG11317
3L	23978759	3L_23978759_DEL [dm3] 3L_23985659_DEL [dm6]	TT	T	4.589e^-9	1.100e^-5	INTRON CG40470
2L	552263	2L_552263_SNP [dm3] 2L_552263_SNP [dm6]	C	A	4.621e^-9	1.104e^-5	UTR_5_PRIME Ets21C
2L	745127	2L_745127_SNP [dm3] 2L_745127_SNP [dm6]	G	C	4.621e^-9	1.104e^-5	UPSTREAM Eaat2 INTERGENIC
3L	5192642	3L_5192642_SNP [dm3] 3L_5199542_SNP [dm6]	T	A	4.621e^-9	1.104e^-5	INTRON shep
3R	21593405	3R_21593405_SNP [dm3] 3R_25767683_SNP [dm6]	A	T	4.672e^-9	1.114e^-5	INTERGENIC
X	16397415	X_16397415_SNP [dm3] X_16503382_SNP [dm6]	A	T	4.801e^-9	1.144e^-5	INTRON para
3R	26712458	3R_26712458_SNP [dm3] 3R_30886736_SNP [dm6]	G	C	4.851e^-9	1.154e^-5	NON_SYNONYMOUS_CODING Sap-r	TF binding site mE1_TFBS_cad
2R	17319445	2R_17319445_SNP [dm3] 2R_21431940_SNP [dm6]	A	G	4.902e^-9	1.165e^-5	INTRON Sdc
2L	7027208	2L_7027208_SNP [dm3] 2L_7027208_SNP [dm6]	C	A	5.011e^-9	1.189e^-5	START_GAINED CG31908 UTR_5_PRIME CG31908 UPSTREAM CG3476	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19249821	2R_19249821_SNP [dm3] 2R_23362298_SNP [dm6]	G	A	5.064e^-9	1.199e^-5	SYNONYMOUS_CODING vir	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19249836	2R_19249836_SNP [dm3] 2R_23362313_SNP [dm6]	C	T	5.064e^-9	1.199e^-5	SYNONYMOUS_CODING vir	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17745841	2L_17745841_INS [dm3] 2L_17745841_INS [dm6]	T	TT	5.101e^-9	1.206e^-5	INTRON CadN
3L	5194984	3L_5194984_SNP [dm3] 3L_5201884_SNP [dm6]	T	C	5.227e^-9	1.234e^-5	UPSTREAM shep INTRON shep
2L	5900385	2L_5900385_SNP [dm3] 2L_5900385_SNP [dm6]	T	G	5.372e^-9	1.267e^-5	UPSTREAM CR44579 INTERGENIC
2R	21128947	2R_21128947_SNP [dm3] 2R_25241424_SNP [dm6]	T	G	5.403e^-9	1.272e^-5	INTRON CG9380
2R	18075429	2R_18075429_SNP [dm3] 2R_22187924_SNP [dm6]	C	T	5.441e^-9	1.280e^-5	SYNONYMOUS_CODING Vps35	TF binding site mE1_TFBS_sens
3R	19989311	3R_19989311_SNP [dm3] 3R_24163589_SNP [dm6]	A	G	5.460e^-9	1.282e^-5	UPSTREAM Apc2 & 1 other DOWNSTREAM CG6182 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med
3L	6450539	3L_6450539_SNP [dm3] 3L_6457439_SNP [dm6]	T	A	5.543e^-9	1.301e^-5	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5820509	2L_5820509_SNP [dm3] 2L_5820509_SNP [dm6]	T	A	5.603e^-9	1.313e^-5	INTERGENIC
2R	8277644	2R_8277644_SNP [dm3] 2R_12390139_SNP [dm6]	C	T	5.829e^-9	1.364e^-5	DOWNSTREAM Cpr49Ad & 1 other INTERGENIC
2L	15160870	2L_15160870_SNP [dm3] 2L_15160870_SNP [dm6]	C	T	5.846e^-9	1.366e^-5	UPSTREAM CR44771 EXON CR44770
X	20318674	X_20318674_SNP [dm3] X_20447647_SNP [dm6]	C	T	5.941e^-9	1.387e^-5	DOWNSTREAM CG42578 INTERGENIC
3R	22551285	3R_22551285_SNP [dm3] 3R_26725563_SNP [dm6]	A	G	6.066e^-9	1.414e^-5	UPSTREAM CG14244 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_run mE1_TFBS_Ubx
2L	15919085	2L_15919085_SNP [dm3] 2L_15919085_SNP [dm6]	C	T	6.102e^-9	1.415e^-5	INTRON beat-Ib
2L	15920367	2L_15920367_SNP [dm3] 2L_15920367_SNP [dm6]	T	C	6.102e^-9	1.415e^-5	INTRON beat-Ib
2L	4706006	2L_4706006_SNP [dm3] 2L_4706006_SNP [dm6]	C	T	6.102e^-9	1.415e^-5	INTRON CG34351
2R	15764166	2R_15764166_SNP [dm3] 2R_19876661_SNP [dm6]	C	T	6.102e^-9	1.415e^-5	INTERGENIC
2R	5489299	2R_5489299_SNP [dm3] 2R_9601794_SNP [dm6]	C	A	6.113e^-9	1.416e^-5	UPSTREAM CG30340 INTRON CG1902 & 1 other
3R	17340447	3R_17340447_SNP [dm3] 3R_21514725_SNP [dm6]	A	T	6.127e^-9	1.418e^-5	INTERGENIC
2R	16501425	2R_16501425_SNP [dm3] 2R_20613920_SNP [dm6]	G	A	6.232e^-9	1.438e^-5	INTRON Hil
2R	17151244	2R_17151244_DEL [dm3] 2R_21263739_DEL [dm6]	GT	A	6.232e^-9	1.438e^-5	INTRON Rgk3
2R	8363375	2R_8363375_SNP [dm3] 2R_12475870_SNP [dm6]	G	T	6.589e^-9	1.519e^-5	INTRON Dh44-R2
3R	25080682	3R_25080682_SNP [dm3] 3R_29254960_SNP [dm6]	T	C	6.698e^-9	1.542e^-5	UTR_5_PRIME stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	5194136	3L_5194136_SNP [dm3] 3L_5201036_SNP [dm6]	A	G	6.705e^-9	1.542e^-5	INTRON shep
2L	2031837	2L_2031837_SNP [dm3] 2L_2031837_SNP [dm6]	C	G	6.778e^-9	1.557e^-5	DOWNSTREAM CG42296 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5899397	2L_5899397_SNP [dm3] 2L_5899397_SNP [dm6]	C	A	6.814e^-9	1.563e^-5	DOWNSTREAM CR44579 INTERGENIC
2R	17319448	2R_17319448_SNP [dm3] 2R_21431943_SNP [dm6]	G	T	6.871e^-9	1.574e^-5	INTRON Sdc
2R	21139194	2R_21139194_SNP [dm3] 2R_25251671_SNP [dm6]	A	G	6.913e^-9	1.582e^-5	UPSTREAM CG30428 INTRON CG9380	transposable element FlyBase
3R	19989313	3R_19989313_INS [dm3] 3R_24163591_INS [dm6]	T	TTTTGAAA	7.266e^-9	1.661e^-5	UPSTREAM Apc2 & 1 other DOWNSTREAM CG6182 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med
3L	5618795	3L_5618795_INS [dm3] 3L_5625695_INS [dm6]	A	AA	7.511e^-9	1.715e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7537977	X_7537977_SNP [dm3] X_7643944_SNP [dm6]	A	T	7.697e^-9	1.753e^-5	INTRON ct
X	7539804	X_7539804_SNP [dm3] X_7645771_SNP [dm6]	T	C	7.697e^-9	1.753e^-5	INTRON ct
2L	15533146	2L_15533146_SNP [dm3] 2L_15533146_SNP [dm6]	T	G	7.753e^-9	1.763e^-5	INTERGENIC
2R	19488505	2R_19488505_DEL [dm3] 2R_23600982_DEL [dm6]	CCAATCGGAGCGTCGTAGTA...	C	7.808e^-9	1.774e^-5	FRAME_SHIFT IM18 UTR_3_PRIME CG10332 UPSTREAM CG42560 & 1 other DOWNSTREAM CG43209	TF binding site mE1_TFBS_cad
2R	16573792	2R_16573792_SNP [dm3] 2R_20686287_SNP [dm6]	C	T	8.127e^-9	1.841e^-5	SYNONYMOUS_CODING Gr57a
2R	17017323	2R_17017323_SNP [dm3] 2R_21129818_SNP [dm6]	G	T	8.137e^-9	1.841e^-5	UTR_3_PRIME Magi DOWNSTREAM mago
3R	23430422	3R_23430422_SNP [dm3] 3R_27604700_SNP [dm6]	T	C	8.163e^-9	1.841e^-5	INTRON dsd
3R	23430495	3R_23430495_SNP [dm3] 3R_27604773_SNP [dm6]	G	A	8.163e^-9	1.841e^-5	INTRON dsd
3R	23430505	3R_23430505_SNP [dm3] 3R_27604783_SNP [dm6]	G	C	8.163e^-9	1.841e^-5	INTRON dsd
3R	25276340	3R_25276340_SNP [dm3] 3R_29450618_SNP [dm6]	T	G	8.163e^-9	1.841e^-5	INTRON Ptp99A
2R	5471146	2R_5471146_SNP [dm3] 2R_9583641_SNP [dm6]	T	C	8.228e^-9	1.851e^-5	NON_SYNONYMOUS_CODING CG1868	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5471828	2R_5471828_SNP [dm3] 2R_9584323_SNP [dm6]	C	A	8.228e^-9	1.851e^-5	UPSTREAM Updo & 1 other INTRON CG1868	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8367064	2R_8367064_SNP [dm3] 2R_12479559_SNP [dm6]	G	A	8.240e^-9	1.851e^-5	INTRON Dh44-R2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	452973	3L_452973_SNP [dm3] 3L_452973_SNP [dm6]	A	G	8.438e^-9	1.894e^-5	SYNONYMOUS_CODING klar INTRON klar
2R	2112104	2R_2112104_INS [dm3] 2R_6224599_INS [dm6]	G	GG	8.956e^-9	2.005e^-5	INTRON bin3	TF binding site BDTNP1_TFBS_hb
2R	2112108	2R_2112108_SNP [dm3] 2R_6224603_SNP [dm6]	A	G	8.956e^-9	2.005e^-5	INTRON bin3	TF binding site BDTNP1_TFBS_hb
2R	17304038	2R_17304038_SNP [dm3] 2R_21416533_SNP [dm6]	C	A	9.174e^-9	2.051e^-5	INTRON Sdc
2R	8282022	2R_8282022_SNP [dm3] 2R_12394517_SNP [dm6]	G	T	9.461e^-9	2.113e^-5	NON_SYNONYMOUS_CODING Or49a SPLICE_SITE_REGION Or49a UPSTREAM CG30048
2L	4466258	2L_4466258_SNP [dm3] 2L_4466258_SNP [dm6]	C	T	9.901e^-9	2.209e^-5	SYNONYMOUS_CODING CG17840	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	1127038	2R_1127038_SNP [dm3] 2R_5239533_SNP [dm6]	G	A	1.014e^-8	2.260e^-5	INTRON Nipped-A	transposable element FlyBase
2L	16114019	2L_16114019_SNP [dm3] 2L_16114019_SNP [dm6]	A	G	1.018e^-8	2.264e^-5	INTERGENIC
2R	17493430	2R_17493430_SNP [dm3] 2R_21605925_SNP [dm6]	A	G	1.022e^-8	2.272e^-5	UTR_3_PRIME CG10433
3R	26918677	3R_26918677_SNP [dm3] 3R_31092955_SNP [dm6]	C	G	1.036e^-8	2.300e^-5	INTRON CG11317
3R	22095762	3R_22095762_SNP [dm3] 3R_26270040_SNP [dm6]	C	T	1.057e^-8	2.344e^-5	SYNONYMOUS_CODING CG6154
X	17644403	X_17644403_SNP [dm3] X_17750370_SNP [dm6]	A	C	1.066e^-8	2.361e^-5	NON_SYNONYMOUS_CODING CG42684	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20210028	3R_20210028_SNP [dm3] 3R_24384306_SNP [dm6]	T	A	1.080e^-8	2.389e^-5	INTRON CG17780
3R	25276336	3R_25276336_SNP [dm3] 3R_29450614_SNP [dm6]	T	G	1.083e^-8	2.393e^-5	INTRON Ptp99A
X	10066463	X_10066463_SNP [dm3] X_10172430_SNP [dm6]	G	A	1.093e^-8	2.408e^-5	INTRON CG43902 & 1 other
X	10066465	X_10066465_SNP [dm3] X_10172432_SNP [dm6]	A	G	1.093e^-8	2.408e^-5	INTRON CG43902 & 1 other
2L	1104925	2L_1104925_SNP [dm3] 2L_1104925_SNP [dm6]	A	G	1.128e^-8	2.480e^-5	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1105107	2L_1105107_DEL [dm3] 2L_1105107_DEL [dm6]	AA	A	1.128e^-8	2.480e^-5	SPLICE_SITE_REGION mtRNApol INTRON mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4768554	2L_4768554_SNP [dm3] 2L_4768554_SNP [dm6]	A	G	1.138e^-8	2.485e^-5	INTRON CG15630
2R	13802430	2R_13802430_SNP [dm3] 2R_17914925_SNP [dm6]	G	T	1.138e^-8	2.485e^-5	INTRON Elk
X	16148452	X_16148452_SNP [dm3] X_16254419_SNP [dm6]	A	T	1.138e^-8	2.485e^-5	UPSTREAM snRNA:U2:14B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16148593	X_16148593_SNP [dm3] X_16254560_SNP [dm6]	T	G	1.138e^-8	2.485e^-5	UPSTREAM snRNA:U2:14B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16148620	X_16148620_SNP [dm3] X_16254587_SNP [dm6]	C	T	1.138e^-8	2.485e^-5	UPSTREAM snRNA:U2:14B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16148875	X_16148875_SNP [dm3] X_16254842_SNP [dm6]	A	G	1.138e^-8	2.485e^-5	UPSTREAM snRNA:U5:14B EXON snRNA:U2:14B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16255416	2L_16255416_SNP [dm3] 2L_16255416_SNP [dm6]	A	G	1.147e^-8	2.502e^-5	INTRON PRL-1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	1456541	2L_1456541_SNP [dm3] 2L_1456541_SNP [dm6]	T	C	1.188e^-8	2.588e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20545359	3R_20545359_SNP [dm3] 3R_24719637_SNP [dm6]	C	G	1.238e^-8	2.694e^-5	UPSTREAM tok & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15401550	X_15401550_SNP [dm3] X_15507517_SNP [dm6]	A	G	1.281e^-8	2.785e^-5	SYNONYMOUS_CODING Gmap UPSTREAM mir-283
2L	7870642	2L_7870642_SNP [dm3] 2L_7870642_SNP [dm6]	G	A	1.329e^-8	2.885e^-5	INTRON Proc
3L	5011548	3L_5011548_SNP [dm3] 3L_5011548_SNP [dm6]	T	A	1.333e^-8	2.891e^-5	UTR_3_PRIME CG12027 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	3743755	2R_3743755_SNP [dm3] 2R_7856250_SNP [dm6]	C	T	1.353e^-8	2.930e^-5	INTRON Dgk
3R	25211868	3R_25211868_SNP [dm3] 3R_29386146_SNP [dm6]	G	A	1.361e^-8	2.944e^-5	INTRON Ptp99A
2R	18908043	2R_18908043_INS [dm3] 2R_23020520_INS [dm6]	C	CA	1.389e^-8	2.999e^-5	INTRON twi & 1 other	TF binding site BDTNP1_TFBS_dl
3R	26638492	3R_26638492_SNP [dm3] 3R_30812770_SNP [dm6]	T	C	1.390e^-8	2.999e^-5	INTRON cindr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	17163391	2L_17163391_SNP [dm3] 2L_17163391_SNP [dm6]	G	A	1.392e^-8	3.000e^-5	INTRON beat-IIIa & 1 other
3R	22348936	3R_22348936_SNP [dm3] 3R_26523214_SNP [dm6]	G	A	1.397e^-8	3.008e^-5	DOWNSTREAM CR45226 INTRON plum
2L	2536847	2L_2536847_SNP [dm3] 2L_2536847_SNP [dm6]	T	C	1.400e^-8	3.012e^-5	INTERGENIC
2L	6904464	2L_6904464_SNP [dm3] 2L_6904464_SNP [dm6]	T	A	1.405e^-8	3.018e^-5	SPLICE_SITE_REGION Nlg2 INTRON Nlg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26918680	3R_26918680_SNP [dm3] 3R_31092958_SNP [dm6]	A	T	1.406e^-8	3.018e^-5	INTRON CG11317
3R	6286470	3R_6286470_DEL [dm3] 3R_10460748_DEL [dm6]	AA	A	1.414e^-8	3.032e^-5	UPSTREAM CR44939 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14391081	3L_14391081_DEL [dm3] 3L_14397981_DEL [dm6]	ATA	A	1.426e^-8	3.054e^-5	INTERGENIC
2R	19665216	2R_19665216_SNP [dm3] 2R_23777693_SNP [dm6]	A	G	1.432e^-8	3.063e^-5	INTRON CG9850
X	7537259	X_7537259_INS [dm3] X_7643226_INS [dm6]	A	ATA	1.451e^-8	3.096e^-5	INTRON ct
X	7543058	X_7543058_SNP [dm3] X_7649025_SNP [dm6]	T	C	1.451e^-8	3.096e^-5	INTRON ct
3R	23147818	3R_23147818_SNP [dm3] 3R_27322096_SNP [dm6]	C	G	1.454e^-8	3.099e^-5	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2167206	3L_2167206_SNP [dm3] 3L_2167206_SNP [dm6]	G	A	1.457e^-8	3.103e^-5	DOWNSTREAM CG15879 INTERGENIC
2L	5125923	2L_5125923_SNP [dm3] 2L_5125923_SNP [dm6]	C	A	1.461e^-8	3.106e^-5	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad
X	14880564	X_14880564_DEL [dm3] X_14986531_DEL [dm6]	TATTGT	T	1.468e^-8	3.117e^-5	INTRON eag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19903762	2R_19903762_SNP [dm3] 2R_24016239_SNP [dm6]	T	A	1.469e^-8	3.117e^-5	SYNONYMOUS_CODING CG4324
2L	1105243	2L_1105243_SNP [dm3] 2L_1105243_SNP [dm6]	C	G	1.474e^-8	3.121e^-5	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13196951	2L_13196951_SNP [dm3] 2L_13196951_SNP [dm6]	A	C	1.475e^-8	3.121e^-5	UTR_3_PRIME Edem2 DOWNSTREAM CG16972
2R	8835407	2R_8835407_DEL [dm3] 2R_12947902_DEL [dm6]	CGC	C	1.491e^-8	3.152e^-5	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	2742990	2R_2742990_SNP [dm3] 2R_6855485_SNP [dm6]	G	T	1.510e^-8	3.184e^-5	INTERGENIC
2R	2743073	2R_2743073_SNP [dm3] 2R_6855568_SNP [dm6]	C	T	1.510e^-8	3.184e^-5	INTERGENIC
2L	16632702	2L_16632702_SNP [dm3] 2L_16632702_SNP [dm6]	T	C	1.599e^-8	3.367e^-5	INTRON CG42389
2L	17158772	2L_17158772_SNP [dm3] 2L_17158772_SNP [dm6]	A	G	1.600e^-8	3.367e^-5	INTRON beat-IIIa & 1 other
X	15401405	X_15401405_SNP [dm3] X_15507372_SNP [dm6]	A	C	1.668e^-8	3.506e^-5	UPSTREAM mir-283 INTRON Gmap	TF binding site mE1_TFBS_HSA
3R	23239238	3R_23239238_SNP [dm3] 3R_27413516_SNP [dm6]	A	C	1.671e^-8	3.509e^-5	INTRON side
2L	1346974	2L_1346974_INS [dm3] 2L_1346974_INS [dm6]	G	GAGACACG	1.693e^-8	3.552e^-5	UPSTREAM CR45006 INTERGENIC
3L	4308364	3L_4308364_SNP [dm3] 3L_4308364_SNP [dm6]	T	C	1.705e^-8	3.572e^-5	UPSTREAM dyl INTERGENIC
3L	4311734	3L_4311734_SNP [dm3] 3L_4311734_SNP [dm6]	G	A	1.732e^-8	3.624e^-5	INTERGENIC
2R	15530294	2R_15530294_SNP [dm3] 2R_19642789_SNP [dm6]	T	C	1.760e^-8	3.679e^-5	UPSTREAM CG15124 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	2776937	2R_2776937_SNP [dm3] 2R_6889432_SNP [dm6]	G	A	1.777e^-8	3.706e^-5	INTERGENIC	TF binding site mE1_TFBS_cad
2R	2777204	2R_2777204_SNP [dm3] 2R_6889699_SNP [dm6]	A	T	1.777e^-8	3.706e^-5	INTERGENIC	TF binding site mE1_TFBS_cad
3R	23332936	3R_23332936_SNP [dm3] 3R_27507214_SNP [dm6]	C	A	1.812e^-8	3.774e^-5	INTERGENIC
2L	8582196	2L_8582196_SNP [dm3] 2L_8582196_SNP [dm6]	C	T	1.822e^-8	3.791e^-5	INTRON Sema-1a
3L	18252970	3L_18252970_INS [dm3] 3L_18259870_INS [dm6]	T	TGTTTAGAATTTTTT...	1.824e^-8	3.791e^-5	INTERGENIC
3R	26918496	3R_26918496_SNP [dm3] 3R_31092774_SNP [dm6]	C	T	1.830e^-8	3.799e^-5	INTRON CG11317
3R	21189773	3R_21189773_SNP [dm3] 3R_25364051_SNP [dm6]	A	C	1.855e^-8	3.845e^-5	INTRON Fur1
X	11038530	X_11038530_SNP [dm3] X_11144497_SNP [dm6]	A	G	1.860e^-8	3.845e^-5	DOWNSTREAM CG15202 & 1 other INTRON CG15201	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11038534	X_11038534_SNP [dm3] X_11144501_SNP [dm6]	C	G	1.860e^-8	3.845e^-5	DOWNSTREAM CG15202 & 1 other INTRON CG15201	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11038552	X_11038552_SNP [dm3] X_11144519_SNP [dm6]	T	C	1.860e^-8	3.845e^-5	DOWNSTREAM CG15202 & 1 other INTRON CG15201	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3425828	2L_3425828_DEL [dm3] 2L_3425828_DEL [dm6]	GCG	G	1.894e^-8	3.910e^-5	INTRON pgant2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26918648	3R_26918648_SNP [dm3] 3R_31092926_SNP [dm6]	T	A	1.912e^-8	3.945e^-5	INTRON CG11317
3R	10362053	3R_10362053_SNP [dm3] 3R_14536331_SNP [dm6]	C	A	1.935e^-8	3.986e^-5	INTRON Pde6
3R	23148492	3R_23148492_SNP [dm3] 3R_27322770_SNP [dm6]	C	T	1.984e^-8	4.083e^-5	UPSTREAM CG3339 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	1337101	2R_1337101_SNP [dm3] 2R_5449596_SNP [dm6]	C	G	2.034e^-8	4.181e^-5	INTRON laccase2
2L	16632449	2L_16632449_SNP [dm3] 2L_16632449_SNP [dm6]	T	C	2.092e^-8	4.295e^-5	INTRON CG42389
2L	5743413	2L_5743413_SNP [dm3] 2L_5743413_SNP [dm6]	C	T	2.112e^-8	4.332e^-5	INTRON CG11030
2L	3491755	2L_3491755_DEL [dm3] 2L_3491755_DEL [dm6]	GTGTTTCTGGTCTCGCTGG...	G	2.118e^-8	4.339e^-5	UPSTREAM CG15414 INTERGENIC	TF binding site mE1_TFBS_inv
3L	1384957	3L_1384957_SNP [dm3] 3L_1384957_SNP [dm6]	C	T	2.140e^-8	4.380e^-5	INTRON Ptp61F & 1 other
X	16302764	X_16302764_SNP [dm3] X_16408731_SNP [dm6]	G	T	2.149e^-8	4.394e^-5	UTR_5_PRIME CG4301 INTRON CG4301
3R	19532231	3R_19532231_SNP [dm3] 3R_23706509_SNP [dm6]	A	G	2.173e^-8	4.437e^-5	INTRON CR44052 & 1 other
3L	4918902	3L_4918902_SNP [dm3] 3L_4918902_SNP [dm6]	A	C	2.248e^-8	4.581e^-5	UTR_3_PRIME Rh50 INTRON Rh50
X	5996182	X_5996182_SNP [dm3] X_6102149_SNP [dm6]	A	G	2.248e^-8	4.581e^-5	SYNONYMOUS_CODING Nep1	TF binding site mE1_TFBS_chinmo
2R	9411303	2R_9411303_SNP [dm3] 2R_13523798_SNP [dm6]	C	T	2.257e^-8	4.590e^-5	DOWNSTREAM CG13331 INTRON Vmat
2R	17148410	2R_17148410_SNP [dm3] 2R_21260905_SNP [dm6]	T	C	2.262e^-8	4.590e^-5	INTRON Rgk3
2R	17148521	2R_17148521_DEL [dm3] 2R_21261016_DEL [dm6]	AGCACAA	G	2.262e^-8	4.590e^-5	INTRON Rgk3
2R	17148530	2R_17148530_MNP [dm3] 2R_21261025_MNP [dm6]	AATC	GTGG	2.262e^-8	4.590e^-5	INTRON Rgk3
3R	23239324	3R_23239324_SNP [dm3] 3R_27413602_SNP [dm6]	C	T	2.289e^-8	4.639e^-5	INTRON side
2R	1113879	2R_1113879_SNP [dm3] 2R_5226374_SNP [dm6]	T	C	2.293e^-8	4.643e^-5	INTRON Nipped-A
2L	15058568	2L_15058568_SNP [dm3] 2L_15058568_SNP [dm6]	A	T	2.337e^-8	4.726e^-5	NON_SYNONYMOUS_CODING CG33679 UPSTREAM ck DOWNSTREAM TfIIS	TF binding site BDTNP1_TFBS_dl
2L	17163719	2L_17163719_SNP [dm3] 2L_17163719_SNP [dm6]	C	T	2.393e^-8	4.742e^-5	INTRON beat-IIIa & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sbb
2R	13172755	2R_13172755_SNP [dm3] 2R_17285250_SNP [dm6]	G	A	2.411e^-8	4.742e^-5	INTRON mbl
2R	9266644	2R_9266644_SNP [dm3] 2R_13379139_SNP [dm6]	A	G	2.411e^-8	4.742e^-5	INTERGENIC
3L	3500992	3L_3500992_SNP [dm3] 3L_3500992_SNP [dm6]	A	G	2.411e^-8	4.742e^-5	INTRON CG42324
3L	4046251	3L_4046251_SNP [dm3] 3L_4046251_SNP [dm6]	T	C	2.411e^-8	4.742e^-5	UPSTREAM CG1136 DOWNSTREAM Dpy-30L2 INTERGENIC
3L	4842828	3L_4842828_SNP [dm3] 3L_4842828_SNP [dm6]	G	C	2.411e^-8	4.742e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4988464	3L_4988464_SNP [dm3] 3L_4988464_SNP [dm6]	A	G	2.411e^-8	4.742e^-5	INTRON Con
3L	4990955	3L_4990955_SNP [dm3] 3L_4990955_SNP [dm6]	G	A	2.411e^-8	4.742e^-5	INTRON Con
3L	4994222	3L_4994222_SNP [dm3] 3L_4994222_SNP [dm6]	A	G	2.411e^-8	4.742e^-5	SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4995775	3L_4995775_SNP [dm3] 3L_4995775_SNP [dm6]	T	A	2.411e^-8	4.742e^-5	NON_SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site mE1_TFBS_sens
3L	9367296	3L_9367296_SNP [dm3] 3L_9374196_SNP [dm6]	T	A	2.411e^-8	4.742e^-5	UTR_5_PRIME Hsp22 UTR_3_PRIME Hsp67Bb DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	13771328	3R_13771328_SNP [dm3] 3R_17945606_SNP [dm6]	G	A	2.411e^-8	4.742e^-5	INTRON cpo
3R	14270096	3R_14270096_SNP [dm3] 3R_18444374_SNP [dm6]	G	A	2.411e^-8	4.742e^-5	INTRON fru
3R	21637635	3R_21637635_SNP [dm3] 3R_25811913_SNP [dm6]	C	A	2.411e^-8	4.742e^-5	UTR_5_PRIME CG17770 & 1 other UPSTREAM Acam DOWNSTREAM CG5024
3R	24043485	3R_24043485_SNP [dm3] 3R_28217763_SNP [dm6]	C	G	2.411e^-8	4.742e^-5	INTRON CG34354
3R	8556647	3R_8556647_SNP [dm3] 3R_12730925_SNP [dm6]	C	T	2.411e^-8	4.742e^-5	INTERGENIC
3R	8604036	3R_8604036_SNP [dm3] 3R_12778314_SNP [dm6]	C	T	2.411e^-8	4.742e^-5	UTR_5_PRIME beat-Vc
3R	9599201	3R_9599201_SNP [dm3] 3R_13773479_SNP [dm6]	C	A	2.411e^-8	4.742e^-5	INTRON CG9297
3R	9600136	3R_9600136_SNP [dm3] 3R_13774414_SNP [dm6]	A	G	2.411e^-8	4.742e^-5	NON_SYNONYMOUS_CODING CG9297 INTRON CG9297
3R	9604350	3R_9604350_SNP [dm3] 3R_13778628_SNP [dm6]	T	A	2.411e^-8	4.742e^-5	UTR_3_PRIME CG9297 UPSTREAM CG9288 & 1 other	TF binding site mE1_TFBS_Trl
X	12621494	X_12621494_SNP [dm3] X_12727461_SNP [dm6]	T	C	2.411e^-8	4.742e^-5	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13700262	X_13700262_SNP [dm3] X_13806229_SNP [dm6]	A	G	2.411e^-8	4.742e^-5	INTRON inaE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	14921659	X_14921659_SNP [dm3] X_15027626_SNP [dm6]	G	A	2.411e^-8	4.742e^-5	INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17221769	X_17221769_SNP [dm3] X_17327736_SNP [dm6]	C	A	2.411e^-8	4.742e^-5	INTERGENIC
X	5704388	X_5704388_SNP [dm3] X_5810355_SNP [dm6]	C	G	2.411e^-8	4.742e^-5	UPSTREAM CR45529 DOWNSTREAM Prosbeta2R1 INTERGENIC
X	7695163	X_7695163_SNP [dm3] X_7801130_SNP [dm6]	A	G	2.411e^-8	4.742e^-5	INTERGENIC
X	4226408	X_4226408_SNP [dm3] X_4332375_SNP [dm6]	G	T	2.468e^-8	4.795e^-5	INTRON norpA
X	4226411	X_4226411_SNP [dm3] X_4332378_SNP [dm6]	C	T	2.468e^-8	4.795e^-5	INTRON norpA
X	4226437	X_4226437_SNP [dm3] X_4332404_SNP [dm6]	A	G	2.468e^-8	4.795e^-5	INTRON norpA
X	4226650	X_4226650_SNP [dm3] X_4332617_SNP [dm6]	C	G	2.468e^-8	4.795e^-5	INTRON norpA
2R	18093406	2R_18093406_DEL [dm3] 2R_22205901_DEL [dm6]	AGCT	A	2.472e^-8	4.795e^-5	UPSTREAM CG3292 DOWNSTREAM CG3290 INTERGENIC
2R	18093412	2R_18093412_SNP [dm3] 2R_22205907_SNP [dm6]	T	G	2.472e^-8	4.795e^-5	UPSTREAM CG3292 DOWNSTREAM CG3290 INTERGENIC
2R	18093414	2R_18093414_SNP [dm3] 2R_22205909_SNP [dm6]	G	T	2.472e^-8	4.795e^-5	UPSTREAM CG3292 DOWNSTREAM CG3290 INTERGENIC
2R	18093417	2R_18093417_SNP [dm3] 2R_22205912_SNP [dm6]	C	A	2.472e^-8	4.795e^-5	UPSTREAM CG3292 DOWNSTREAM CG3290 INTERGENIC
2R	18093418	2R_18093418_SNP [dm3] 2R_22205913_SNP [dm6]	T	A	2.472e^-8	4.795e^-5	UPSTREAM CG3292 DOWNSTREAM CG3290 INTERGENIC
2R	18093448	2R_18093448_DEL [dm3] 2R_22205943_DEL [dm6]	ATTACT	A	2.472e^-8	4.795e^-5	UPSTREAM CG3292 DOWNSTREAM CG3290 INTERGENIC
2R	18093455	2R_18093455_SNP [dm3] 2R_22205950_SNP [dm6]	T	G	2.472e^-8	4.795e^-5	UPSTREAM CG3292 DOWNSTREAM CG3290 INTERGENIC
2R	18093456	2R_18093456_SNP [dm3] 2R_22205951_SNP [dm6]	A	G	2.472e^-8	4.795e^-5	UPSTREAM CG3292 DOWNSTREAM CG3290 INTERGENIC
2R	18093458	2R_18093458_DEL [dm3] 2R_22205953_DEL [dm6]	GATTACC	G	2.472e^-8	4.795e^-5	UPSTREAM CG3292 DOWNSTREAM CG3290 INTERGENIC
3R	26923515	3R_26923515_DEL [dm3] 3R_31097793_DEL [dm6]	CT	C	2.494e^-8	4.832e^-5	UPSTREAM CG11317 INTERGENIC
3R	22398114	3R_22398114_SNP [dm3] 3R_26572392_SNP [dm6]	C	A	2.521e^-8	4.881e^-5	INTRON scrib
2R	1337353	2R_1337353_SNP [dm3] 2R_5449848_SNP [dm6]	T	C	2.566e^-8	4.962e^-5	INTRON laccase2
3R	26899095	3R_26899095_SNP [dm3] 3R_31073373_SNP [dm6]	T	A	2.574e^-8	4.968e^-5	INTRON Sox100B
X	2331362	X_2331362_INS [dm3] X_2437329_INS [dm6]	A	ACGCCGCACA	2.574e^-8	4.968e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23183105	3R_23183105_DEL [dm3] 3R_27357383_DEL [dm6]	TT	T	2.611e^-8	5.033e^-5	INTRON CG42534	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17427732	2R_17427732_SNP [dm3] 2R_21540227_SNP [dm6]	T	A	2.627e^-8	5.060e^-5	UPSTREAM CG33226 INTRON Egfr & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	8542538	2R_8542538_SNP [dm3] 2R_12655033_SNP [dm6]	A	G	2.685e^-8	5.166e^-5	SYNONYMOUS_CODING ZnT49B UPSTREAM CG8646
2L	13824575	2L_13824575_SNP [dm3] 2L_13824575_SNP [dm6]	T	G	2.696e^-8	5.181e^-5	SYNONYMOUS_CODING tam DOWNSTREAM b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26996895	3R_26996895_SNP [dm3] 3R_31171173_SNP [dm6]	G	A	2.707e^-8	5.197e^-5	NON_SYNONYMOUS_CODING Gycbeta100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23335486	3R_23335486_DEL [dm3] 3R_27509764_DEL [dm6]	TCTATATCCTCCATA...	C	2.728e^-8	5.233e^-5	INTERGENIC
3R	25280871	3R_25280871_DEL [dm3] 3R_29455149_DEL [dm6]	TAAG	A	2.755e^-8	5.278e^-5	INTRON Ptp99A
3L	3511195	3L_3511195_SNP [dm3] 3L_3511195_SNP [dm6]	C	T	2.775e^-8	5.307e^-5	UTR_3_PRIME ImpE2 DOWNSTREAM CG42324	TF binding site mE1_TFBS_cad
3R	26818928	3R_26818928_SNP [dm3] 3R_30993206_SNP [dm6]	G	T	2.775e^-8	5.307e^-5	UPSTREAM CG31007 INTRON 5-HT7
3L	5476073	3L_5476073_SNP [dm3] 3L_5482973_SNP [dm6]	G	A	2.786e^-8	5.321e^-5	SYNONYMOUS_CODING CG4835	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1252129	3L_1252129_SNP [dm3] 3L_1252129_SNP [dm6]	A	C	2.816e^-8	5.373e^-5	UTR_5_PRIME CG9130 & 1 other DOWNSTREAM CG9129	TF binding site mE1_TFBS_cad
3R	20560571	3R_20560571_SNP [dm3] 3R_24734849_SNP [dm6]	T	C	2.844e^-8	5.421e^-5	INTRON tok
2L	4357323	2L_4357323_SNP [dm3] 2L_4357323_SNP [dm6]	G	A	2.862e^-8	5.450e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	25261982	3R_25261982_SNP [dm3] 3R_29436260_SNP [dm6]	T	A	2.870e^-8	5.460e^-5	INTRON Ptp99A
2L	10255303	2L_10255303_SNP [dm3] 2L_10255303_SNP [dm6]	G	T	2.922e^-8	5.552e^-5	DOWNSTREAM Ror INTRON CG5676	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
2L	5900355	2L_5900355_SNP [dm3] 2L_5900355_SNP [dm6]	A	T	2.990e^-8	5.634e^-5	EXON CR44579
2L	10901246	2L_10901246_INS [dm3] 2L_10901246_INS [dm6]	A	ACC	3.028e^-8	5.634e^-5	INTRON CG14070
2L	6922903	2L_6922903_SNP [dm3] 2L_6922903_SNP [dm6]	C	T	3.033e^-8	5.634e^-5	INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	11791457	2R_11791457_SNP [dm3] 2R_15903952_SNP [dm6]	C	G	3.052e^-8	5.634e^-5	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17946748	2R_17946748_SNP [dm3] 2R_22059243_SNP [dm6]	A	C	3.071e^-8	5.634e^-5	SYNONYMOUS_CODING CG13501	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
X	4226751	X_4226751_SNP [dm3] X_4332718_SNP [dm6]	G	C	3.099e^-8	5.634e^-5	INTRON norpA
2R	10325685	2R_10325685_SNP [dm3] 2R_14438180_SNP [dm6]	C	G	3.104e^-8	5.634e^-5	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13742528	2R_13742528_INS [dm3] 2R_17855023_INS [dm6]	T	TTA	3.104e^-8	5.634e^-5	UPSTREAM olf186-F DOWNSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5050283	2L_5050283_SNP [dm3] 2L_5050283_SNP [dm6]	A	G	3.105e^-8	5.634e^-5	UPSTREAM CG9121 DOWNSTREAM eIF-3p40 INTRON CG9121
2L	5050288	2L_5050288_SNP [dm3] 2L_5050288_SNP [dm6]	A	C	3.105e^-8	5.634e^-5	UPSTREAM CG9121 DOWNSTREAM eIF-3p40 INTRON CG9121
2L	7270406	2L_7270406_INS [dm3] 2L_7270406_INS [dm6]	A	ATATGCACTAAAATAAA...	3.105e^-8	5.634e^-5	INTRON Wnt4
2L	7270408	2L_7270408_SNP [dm3] 2L_7270408_SNP [dm6]	T	A	3.105e^-8	5.634e^-5	INTRON Wnt4
2L	7270418	2L_7270418_SNP [dm3] 2L_7270418_SNP [dm6]	A	C	3.105e^-8	5.634e^-5	INTRON Wnt4
2L	7270546	2L_7270546_SNP [dm3] 2L_7270546_SNP [dm6]	A	T	3.105e^-8	5.634e^-5	INTRON Wnt4
2R	4125032	2R_4125032_DEL [dm3] 2R_8237527_DEL [dm6]	TT	T	3.105e^-8	5.634e^-5	UTR_5_PRIME pnut UPSTREAM pnut	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	4125173	2R_4125173_INS [dm3] 2R_8237668_INS [dm6]	A	ATGTA	3.105e^-8	5.634e^-5	UTR_5_PRIME pnut UPSTREAM pnut	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4989767	3L_4989767_SNP [dm3] 3L_4989767_SNP [dm6]	A	G	3.105e^-8	5.634e^-5	INTRON Con
3L	4992582	3L_4992582_SNP [dm3] 3L_4992582_SNP [dm6]	A	T	3.105e^-8	5.634e^-5	INTRON Con
3L	4993474	3L_4993474_SNP [dm3] 3L_4993474_SNP [dm6]	A	T	3.105e^-8	5.634e^-5	DOWNSTREAM CG32232 INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4993741	3L_4993741_SNP [dm3] 3L_4993741_SNP [dm6]	G	A	3.105e^-8	5.634e^-5	DOWNSTREAM CG32232 INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4994838	3L_4994838_SNP [dm3] 3L_4994838_SNP [dm6]	A	G	3.105e^-8	5.634e^-5	SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens

By genomic position
Variant impact
Gene name

Microbiota_OTU091 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results