DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.281e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.05383

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2372 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	10665993	3R_10665993_SNP [dm3] 3R_14840271_SNP [dm6]	T	C	2.053e^-7	0.289	INTRON btsz
2L	795992	2L_795992_SNP [dm3] 2L_795992_SNP [dm6]	A	G	4.130e^-7	0.289	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13817690	X_13817690_SNP [dm3] X_13923657_SNP [dm6]	A	G	4.668e^-7	0.289	INTRON mamo
3R	10669748	3R_10669748_SNP [dm3] 3R_14844026_SNP [dm6]	T	C	6.403e^-7	0.298	INTRON btsz
3L	7184956	3L_7184956_SNP [dm3] 3L_7191856_SNP [dm6]	T	G	9.986e^-7	0.342	INTERGENIC
3R	3445344	3R_3445344_SNP [dm3] 3R_7619622_SNP [dm6]	C	T	1.104e^-6	0.342	INTRON CG34127
3L	8441217	3L_8441217_SNP [dm3] 3L_8448117_SNP [dm6]	A	T	1.662e^-6	0.414	INTRON CG6983	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	16439894	3L_16439894_DEL [dm3] 3L_16446794_DEL [dm6]	CA	C	1.781e^-6	0.414	INTRON CG33158 & 1 other
X	11226214	X_11226214_SNP [dm3] X_11332181_SNP [dm6]	T	C	2.433e^-6	0.503	NON_SYNONYMOUS_CODING CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10679072	3R_10679072_SNP [dm3] 3R_14853350_SNP [dm6]	C	G	3.265e^-6	0.512	INTRON btsz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2R	6929905	2R_6929905_SNP [dm3] 2R_11042400_SNP [dm6]	G	A	3.299e^-6	0.512	INTRON luna	TF binding site mE1_TFBS_cad
3L	7958413	3L_7958413_SNP [dm3] 3L_7965313_SNP [dm6]	A	G	3.348e^-6	0.512	INTERGENIC
X	11225811	X_11225811_SNP [dm3] X_11331778_SNP [dm6]	G	A	3.674e^-6	0.512	SYNONYMOUS_CODING CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10749024	3R_10749024_SNP [dm3] 3R_14923302_SNP [dm6]	A	G	4.897e^-6	0.512	DOWNSTREAM Sdr EXON CR45598
3R	3372756	3R_3372756_SNP [dm3] 3R_7547034_SNP [dm6]	A	G	4.959e^-6	0.512	SYNONYMOUS_CODING alpha-Est1	TF binding site mE1_TFBS_cad
3L	5702891	3L_5702891_DEL [dm3] 3L_5709791_DEL [dm6]	TT	T	4.970e^-6	0.512	INTRON sif
X	6936777	X_6936777_SNP [dm3] X_7042744_SNP [dm6]	C	A	5.148e^-6	0.512	DOWNSTREAM CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	24236159	3R_24236159_SNP [dm3] 3R_28410437_SNP [dm6]	T	G	5.416e^-6	0.512	INTERGENIC
3R	10665990	3R_10665990_SNP [dm3] 3R_14840268_SNP [dm6]	T	A	6.268e^-6	0.512	INTRON btsz
3R	10665996	3R_10665996_SNP [dm3] 3R_14840274_SNP [dm6]	T	C	6.268e^-6	0.512	INTRON btsz
2L	19755308	2L_19755308_SNP [dm3] 2L_19755308_SNP [dm6]	T	C	6.510e^-6	0.512	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	10667071	3R_10667071_SNP [dm3] 3R_14841349_SNP [dm6]	T	A	7.231e^-6	0.512	INTRON btsz
3R	2725645	3R_2725645_SNP [dm3] 3R_6899923_SNP [dm6]	C	T	7.926e^-6	0.512	INTRON Antp
3L	22043940	3L_22043940_SNP [dm3] 3L_22050840_SNP [dm6]	G	A	8.633e^-6	0.512	INTRON Oct-TyrR
2L	20518653	2L_20518653_SNP [dm3] 2L_20518653_SNP [dm6]	C	A	8.758e^-6	0.512	INTERGENIC
3R	27495978	3R_27495978_SNP [dm3] 3R_31670256_SNP [dm6]	T	C	9.250e^-6	0.512	INTRON CG1815	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
X	11225826	X_11225826_SNP [dm3] X_11331793_SNP [dm6]	G	T	9.723e^-6	0.512	SYNONYMOUS_CODING CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10679083	3R_10679083_SNP [dm3] 3R_14853361_SNP [dm6]	C	T	1.010e^-5	0.512	INTRON btsz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	15177832	3L_15177832_SNP [dm3] 3L_15184732_SNP [dm6]	C	A	1.030e^-5	0.512	INTERGENIC
3R	10669778	3R_10669778_INS [dm3] 3R_14844056_INS [dm6]	T	TTT	1.037e^-5	0.512	UPSTREAM CG3610 INTRON btsz
3R	25200307	3R_25200307_SNP [dm3] 3R_29374585_SNP [dm6]	A	T	1.087e^-5	0.512	INTERGENIC
3R	25200308	3R_25200308_INS [dm3] 3R_29374586_INS [dm6]	G	GC	1.087e^-5	0.512	INTERGENIC
2L	19755335	2L_19755335_SNP [dm3] 2L_19755335_SNP [dm6]	T	C	1.102e^-5	0.512	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	1230515	2R_1230515_SNP [dm3] 2R_5343010_SNP [dm6]	A	G	1.117e^-5	0.512	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	27495863	3R_27495863_SNP [dm3] 3R_31670141_SNP [dm6]	T	C	1.201e^-5	0.512	INTRON CG1815	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6929830	2R_6929830_SNP [dm3] 2R_11042325_SNP [dm6]	G	A	1.219e^-5	0.512	INTRON luna	TF binding site mE1_TFBS_cad
3L	15177785	3L_15177785_SNP [dm3] 3L_15184685_SNP [dm6]	T	C	1.244e^-5	0.512	INTERGENIC
3L	15177783	3L_15177783_INS [dm3] 3L_15184683_INS [dm6]	T	TC	1.272e^-5	0.512	INTERGENIC
3L	8437793	3L_8437793_SNP [dm3] 3L_8444693_SNP [dm6]	C	A	1.281e^-5	0.512	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10180808	2L_10180808_SNP [dm3] 2L_10180808_SNP [dm6]	G	A	1.282e^-5	0.512	UPSTREAM CG44153 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14313074	3L_14313074_SNP [dm3] 3L_14319974_SNP [dm6]	C	G	1.328e^-5	0.512	INTRON fz
2L	6251579	2L_6251579_SNP [dm3] 2L_6251579_SNP [dm6]	A	G	1.372e^-5	0.512	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	3358829	3R_3358829_SNP [dm3] 3R_7533107_SNP [dm6]	A	G	1.391e^-5	0.512	DOWNSTREAM alpha-Est5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14313146	3L_14313146_SNP [dm3] 3L_14320046_SNP [dm6]	T	G	1.391e^-5	0.512	INTRON fz
3L	17337446	3L_17337446_SNP [dm3] 3L_17344346_SNP [dm6]	C	T	1.432e^-5	0.512	SYNONYMOUS_CODING brv2 DOWNSTREAM Mip
3L	14313214	3L_14313214_SNP [dm3] 3L_14320114_SNP [dm6]	C	G	1.460e^-5	0.512	INTRON fz
2L	3766024	2L_3766024_SNP [dm3] 2L_3766024_SNP [dm6]	C	T	1.468e^-5	0.512	SYNONYMOUS_CODING CG43707 UPSTREAM CG43707 DOWNSTREAM CG43703 INTRON CG43707	TF binding site mE1_TFBS_Trl
3R	10679084	3R_10679084_SNP [dm3] 3R_14853362_SNP [dm6]	C	G	1.470e^-5	0.512	INTRON btsz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	6929901	2R_6929901_SNP [dm3] 2R_11042396_SNP [dm6]	T	C	1.484e^-5	0.512	INTRON luna	TF binding site mE1_TFBS_cad
2L	1308915	2L_1308915_SNP [dm3] 2L_1308915_SNP [dm6]	C	G	1.487e^-5	0.512	INTERGENIC
3R	23732387	3R_23732387_SNP [dm3] 3R_27906665_SNP [dm6]	C	G	1.501e^-5	0.512	UPSTREAM CG34353 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	4375889	2R_4375889_SNP [dm3] 2R_8488384_SNP [dm6]	T	C	1.581e^-5	0.512	INTRON mtt
3R	14944077	3R_14944077_SNP [dm3] 3R_19118355_SNP [dm6]	G	T	1.617e^-5	0.512	INTRON CG6040
X	11225976	X_11225976_SNP [dm3] X_11331943_SNP [dm6]	C	T	1.632e^-5	0.512	SYNONYMOUS_CODING CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11511131	2R_11511131_SNP [dm3] 2R_15623626_SNP [dm6]	C	A	1.702e^-5	0.512	INTRON CG42524	TF binding site mE1_TFBS_chinmo
2L	1143858	2L_1143858_SNP [dm3] 2L_1143858_SNP [dm6]	G	A	1.709e^-5	0.512	DOWNSTREAM CR45717 INTRON MFS3
3R	9762612	3R_9762612_SNP [dm3] 3R_13936890_SNP [dm6]	G	T	1.812e^-5	0.512	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4484634	2L_4484634_SNP [dm3] 2L_4484634_SNP [dm6]	G	A	1.833e^-5	0.512	SPLICE_SITE_REGION dp INTRON dp	TF binding site mE1_TFBS_cad
2R	6741193	2R_6741193_SNP [dm3] 2R_10853688_SNP [dm6]	T	G	1.878e^-5	0.512	UTR_5_PRIME CG30015 INTRON CG30015 & 1 other	TF binding site BDTNP1_TFBS_twi
X	11225931	X_11225931_SNP [dm3] X_11331898_SNP [dm6]	T	C	2.011e^-5	0.512	SYNONYMOUS_CODING CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9249027	2R_9249027_SNP [dm3] 2R_13361522_SNP [dm6]	G	C	2.022e^-5	0.512	DOWNSTREAM CR45312 INTERGENIC
2L	22340867	2L_22340867_SNP [dm3] 2L_22340867_SNP [dm6]	A	C	2.043e^-5	0.512	INTRON CG17018 EXON CR43359
2L	22340868	2L_22340868_SNP [dm3] 2L_22340868_SNP [dm6]	T	C	2.086e^-5	0.512	INTRON CG17018 EXON CR43359
2L	545511	2L_545511_SNP [dm3] 2L_545511_SNP [dm6]	A	G	2.119e^-5	0.512	NON_SYNONYMOUS_CODING nAChRbeta3 UTR_3_PRIME Ets21C UPSTREAM Spp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1859693	3L_1859693_SNP [dm3] 3L_1859693_SNP [dm6]	T	C	2.131e^-5	0.512	UTR_3_PRIME R DOWNSTREAM CG12024
2L	16870062	2L_16870062_SNP [dm3] 2L_16870062_SNP [dm6]	C	A	2.133e^-5	0.512	UPSTREAM CR31781 EXON CR31781	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13685847	3L_13685847_SNP [dm3] 3L_13692747_SNP [dm6]	G	A	2.176e^-5	0.512	INTRON bru-3
3L	17365713	3L_17365713_SNP [dm3] 3L_17372613_SNP [dm6]	T	A	2.191e^-5	0.512	NON_SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_cad
2L	1251182	2L_1251182_SNP [dm3] 2L_1251182_SNP [dm6]	A	C	2.200e^-5	0.512	INTERGENIC
3L	17166870	3L_17166870_SNP [dm3] 3L_17173770_SNP [dm6]	T	A	2.255e^-5	0.512	INTRON Rbp6
3L	17166952	3L_17166952_INS [dm3] 3L_17173852_INS [dm6]	C	ACA	2.255e^-5	0.512	INTRON Rbp6
2R	3418130	2R_3418130_SNP [dm3] 2R_7530625_SNP [dm6]	G	A	2.268e^-5	0.512	UTR_5_PRIME Drat INTRON Drat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	17167810	3L_17167810_SNP [dm3] 3L_17174710_SNP [dm6]	A	G	2.270e^-5	0.512	INTRON Rbp6
3L	17168134	3L_17168134_SNP [dm3] 3L_17175034_SNP [dm6]	G	T	2.270e^-5	0.512	INTRON Rbp6
3L	17171119	3L_17171119_SNP [dm3] 3L_17178019_SNP [dm6]	C	T	2.270e^-5	0.512	INTRON Rbp6
3R	3373694	3R_3373694_SNP [dm3] 3R_7547972_SNP [dm6]	G	A	2.337e^-5	0.512	SYNONYMOUS_CODING alpha-Est1
3L	17337163	3L_17337163_SNP [dm3] 3L_17344063_SNP [dm6]	G	T	2.340e^-5	0.512	DOWNSTREAM Mip INTRON brv2
3R	3589744	3R_3589744_SNP [dm3] 3R_7764022_SNP [dm6]	G	A	2.343e^-5	0.512	DOWNSTREAM Sp7 INTERGENIC
X	10863770	X_10863770_SNP [dm3] X_10969737_SNP [dm6]	T	C	2.347e^-5	0.512	INTRON CG42339
3R	19188115	3R_19188115_SNP [dm3] 3R_23362393_SNP [dm6]	C	T	2.364e^-5	0.512	SYNONYMOUS_CODING CG4408	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17337299	3L_17337299_SNP [dm3] 3L_17344199_SNP [dm6]	G	A	2.387e^-5	0.512	SYNONYMOUS_CODING brv2 DOWNSTREAM Mip
3R	3506594	3R_3506594_SNP [dm3] 3R_7680872_SNP [dm6]	G	A	2.427e^-5	0.512	INTRON Nlg1
3L	9604899	3L_9604899_DEL [dm3] 3L_9611799_DEL [dm6]	GT	G	2.451e^-5	0.512	SPLICE_SITE_REGION CG3280 INTRON CG3280
2R	11511098	2R_11511098_SNP [dm3] 2R_15623593_SNP [dm6]	A	G	2.460e^-5	0.512	INTRON CG42524	TF binding site mE1_TFBS_chinmo
3L	12556215	3L_12556215_SNP [dm3] 3L_12563115_SNP [dm6]	T	C	2.461e^-5	0.512	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7184972	3L_7184972_SNP [dm3] 3L_7191872_SNP [dm6]	G	A	2.518e^-5	0.512	INTERGENIC
2L	6110853	2L_6110853_SNP [dm3] 2L_6110853_SNP [dm6]	G	C	2.539e^-5	0.512	INTRON stai
2L	3485581	2L_3485581_SNP [dm3] 2L_3485581_SNP [dm6]	C	T	2.582e^-5	0.512	INTRON CG15414
3L	13685780	3L_13685780_SNP [dm3] 3L_13692680_SNP [dm6]	T	C	2.611e^-5	0.512	INTRON bru-3
2L	804780	2L_804780_SNP [dm3] 2L_804780_SNP [dm6]	A	T	2.625e^-5	0.512	INTERGENIC	TF binding site mE1_TFBS_HSA
X	9419068	X_9419068_SNP [dm3] X_9525035_SNP [dm6]	T	C	2.637e^-5	0.512	INTRON CG32700
3L	11417987	3L_11417987_SNP [dm3] 3L_11424887_SNP [dm6]	A	C	2.666e^-5	0.512	UPSTREAM CG7560 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	4681182	3L_4681182_SNP [dm3] 3L_4681182_SNP [dm6]	A	T	2.701e^-5	0.512	INTRON axo
3L	4681184	3L_4681184_SNP [dm3] 3L_4681184_SNP [dm6]	A	T	2.701e^-5	0.512	INTRON axo
2L	7270672	2L_7270672_SNP [dm3] 2L_7270672_SNP [dm6]	T	C	2.708e^-5	0.512	INTRON Wnt4
2L	18522257	2L_18522257_SNP [dm3] 2L_18522257_SNP [dm6]	G	A	2.721e^-5	0.512	INTRON CG10211
3R	3490105	3R_3490105_SNP [dm3] 3R_7664383_SNP [dm6]	C	A	2.735e^-5	0.512	INTRON Nlg1
3L	7184949	3L_7184949_SNP [dm3] 3L_7191849_SNP [dm6]	T	G	2.773e^-5	0.512	INTERGENIC
X	2997323	X_2997323_SNP [dm3] X_3103290_SNP [dm6]	T	C	2.811e^-5	0.512	INTRON kirre
X	8258448	X_8258448_SNP [dm3] X_8364415_SNP [dm6]	G	T	2.821e^-5	0.512	INTRON nAChRalpha3
3L	6766200	3L_6766200_SNP [dm3] 3L_6773100_SNP [dm6]	C	A	2.864e^-5	0.512	INTERGENIC
2R	9249045	2R_9249045_SNP [dm3] 2R_13361540_SNP [dm6]	A	T	2.864e^-5	0.512	DOWNSTREAM CR45312 INTERGENIC
3L	21114939	3L_21114939_DEL [dm3] 3L_21121839_DEL [dm6]	ATTGA	A	2.913e^-5	0.512	UTR_5_PRIME CG43938 INTRON ko	TF binding site mE1_TFBS_cad
3R	3460798	3R_3460798_SNP [dm3] 3R_7635076_SNP [dm6]	G	A	2.918e^-5	0.512	INTRON CG34127
3L	9337962	3L_9337962_SNP [dm3] 3L_9344862_SNP [dm6]	C	T	2.940e^-5	0.512	INTRON PGRP-LC
X	2712146	X_2712146_SNP [dm3] X_2818113_SNP [dm6]	C	T	2.951e^-5	0.512	INTRON kirre
2L	7005452	2L_7005452_SNP [dm3] 2L_7005452_SNP [dm6]	G	A	2.954e^-5	0.512	INTRON uif
3L	12673186	3L_12673186_SNP [dm3] 3L_12680086_SNP [dm6]	T	G	2.974e^-5	0.512	INTERGENIC	TF binding site mE1_TFBS_cad
3R	3497863	3R_3497863_SNP [dm3] 3R_7672141_SNP [dm6]	G	T	3.066e^-5	0.523	INTRON Nlg1
3L	10457061	3L_10457061_SNP [dm3] 3L_10463961_SNP [dm6]	G	T	3.089e^-5	0.523	NON_SYNONYMOUS_CODING CG32061 UPSTREAM Gem3	TF binding site mE1_TFBS_bab1
2L	16781122	2L_16781122_DEL [dm3] 2L_16781122_DEL [dm6]	GC	T	3.144e^-5	0.523	INTRON Mhc
2L	18522349	2L_18522349_SNP [dm3] 2L_18522349_SNP [dm6]	G	T	3.158e^-5	0.523	DOWNSTREAM CR44903 INTRON CG10211
2L	3813527	2L_3813527_SNP [dm3] 2L_3813527_SNP [dm6]	G	A	3.205e^-5	0.523	UPSTREAM CG3407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
2R	6266409	2R_6266409_SNP [dm3] 2R_10378904_SNP [dm6]	T	C	3.220e^-5	0.523	NON_SYNONYMOUS_CODING Ir47a INTRON CG42732	TF binding site mE1_TFBS_sens
X	15418520	X_15418520_SNP [dm3] X_15524487_SNP [dm6]	C	G	3.293e^-5	0.523	INTRON Ac13E
X	11225889	X_11225889_SNP [dm3] X_11331856_SNP [dm6]	G	A	3.297e^-5	0.523	SYNONYMOUS_CODING CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	3363883	3R_3363883_SNP [dm3] 3R_7538161_SNP [dm6]	C	A	3.304e^-5	0.523	DOWNSTREAM alpha-Est3 INTRON alpha-Est4
X	5458443	X_5458443_DEL [dm3] X_5564410_DEL [dm6]	TA	T	3.318e^-5	0.523	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	8174025	3L_8174025_SNP [dm3] 3L_8180925_SNP [dm6]	C	T	3.435e^-5	0.533	UTR_5_PRIME CG7979 UPSTREAM mthl7
3L	10464616	3L_10464616_INS [dm3] 3L_10471516_INS [dm6]	A	AC	3.451e^-5	0.533	INTERGENIC
X	17455467	X_17455467_SNP [dm3] X_17561434_SNP [dm6]	G	T	3.469e^-5	0.533	UPSTREAM CG43658 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	13664748	3L_13664748_INS [dm3] 3L_13671648_INS [dm6]	T	TGCT	3.524e^-5	0.537	INTRON bru-3
3R	23732405	3R_23732405_SNP [dm3] 3R_27906683_SNP [dm6]	C	G	3.555e^-5	0.538	UPSTREAM CG34353 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10239974	X_10239974_SNP [dm3] X_10345941_SNP [dm6]	G	A	3.690e^-5	0.549	INTRON CG43740
2L	17790688	2L_17790688_SNP [dm3] 2L_17790688_SNP [dm6]	T	G	3.758e^-5	0.549	INTRON CadN2
2L	15755007	2L_15755007_SNP [dm3] 2L_15755007_SNP [dm6]	T	C	3.837e^-5	0.549	SYNONYMOUS_CODING l_2_35Df DOWNSTREAM Gli	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	5896687	2L_5896687_SNP [dm3] 2L_5896687_SNP [dm6]	G	T	3.851e^-5	0.549	INTERGENIC
3L	10506848	3L_10506848_INS [dm3] 3L_10513748_INS [dm6]	G	GAA	3.865e^-5	0.549	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl
X	8258438	X_8258438_SNP [dm3] X_8364405_SNP [dm6]	A	T	3.948e^-5	0.549	INTRON nAChRalpha3
X	8258455	X_8258455_SNP [dm3] X_8364422_SNP [dm6]	T	A	3.948e^-5	0.549	INTRON nAChRalpha3
3L	6766188	3L_6766188_SNP [dm3] 3L_6773088_SNP [dm6]	T	A	3.955e^-5	0.549	INTERGENIC
3R	15908618	3R_15908618_SNP [dm3] 3R_20082896_SNP [dm6]	T	A	3.961e^-5	0.549	UPSTREAM Rh3 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27136543	3R_27136543_SNP [dm3] 3R_31310821_SNP [dm6]	T	A	4.006e^-5	0.549	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	17172116	3L_17172116_SNP [dm3] 3L_17179016_SNP [dm6]	T	C	4.046e^-5	0.549	INTRON Rbp6
3R	27122951	3R_27122951_SNP [dm3] 3R_31297229_SNP [dm6]	C	G	4.055e^-5	0.549	INTERGENIC
2L	14446643	2L_14446643_INS [dm3] 2L_14446643_INS [dm6]	T	TCT	4.088e^-5	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens
2L	14446648	2L_14446648_SNP [dm3] 2L_14446648_SNP [dm6]	C	T	4.088e^-5	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens
3R	24083525	3R_24083525_SNP [dm3] 3R_28257803_SNP [dm6]	T	C	4.146e^-5	0.549	INTERGENIC
3R	3372416	3R_3372416_SNP [dm3] 3R_7546694_SNP [dm6]	A	G	4.152e^-5	0.549	SYNONYMOUS_CODING alpha-Est1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19375605	2L_19375605_SNP [dm3] 2L_19375605_SNP [dm6]	A	G	4.173e^-5	0.549	INTERGENIC
2L	13089658	2L_13089658_SNP [dm3] 2L_13089658_SNP [dm6]	A	G	4.181e^-5	0.549	UPSTREAM CR44197 INTERGENIC
3R	26083453	3R_26083453_SNP [dm3] 3R_30257731_SNP [dm6]	C	T	4.190e^-5	0.549	INTERGENIC
3L	12591748	3L_12591748_INS [dm3] 3L_12598648_INS [dm6]	A	AC	4.274e^-5	0.549	INTERGENIC
3R	11661233	3R_11661233_SNP [dm3] 3R_15835511_SNP [dm6]	A	G	4.306e^-5	0.549	SYNONYMOUS_CODING Arpc3A DOWNSTREAM ND23 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	19190918	2L_19190918_SNP [dm3] 2L_19190918_SNP [dm6]	G	T	4.320e^-5	0.549	DOWNSTREAM pigeon INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	6095660	2L_6095660_INS [dm3] 2L_6095660_INS [dm6]	A	AA	4.343e^-5	0.549	UTR_3_PRIME CG45075 & 1 other	TF binding site mE1_TFBS_cad
3L	2413202	3L_2413202_INS [dm3] 3L_2413202_INS [dm6]	A	AA	4.357e^-5	0.549	UPSTREAM CG45186 INTRON CG45186
2L	4282028	2L_4282028_SNP [dm3] 2L_4282028_SNP [dm6]	T	A	4.407e^-5	0.549	UPSTREAM Art2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	8492618	2L_8492618_SNP [dm3] 2L_8492618_SNP [dm6]	T	C	4.430e^-5	0.549	UTR_3_PRIME Dh31
2L	8772009	2L_8772009_SNP [dm3] 2L_8772009_SNP [dm6]	G	A	4.433e^-5	0.549	SYNONYMOUS_CODING CG9465 DOWNSTREAM CG9466
X	8258345	X_8258345_SNP [dm3] X_8364312_SNP [dm6]	T	A	4.549e^-5	0.549	INTRON nAChRalpha3
2L	3481715	2L_3481715_SNP [dm3] 2L_3481715_SNP [dm6]	G	A	4.624e^-5	0.549	NON_SYNONYMOUS_CODING CG15414	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3422950	2R_3422950_SNP [dm3] 2R_7535445_SNP [dm6]	C	T	4.631e^-5	0.549	SYNONYMOUS_CODING Cyt-b5 UPSTREAM CG2137
X	15545086	X_15545086_SNP [dm3] X_15651053_SNP [dm6]	A	G	4.657e^-5	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14335072	3R_14335072_INS [dm3] 3R_18509350_INS [dm6]	T	TTT	4.660e^-5	0.549	INTRON fru
2R	17581896	2R_17581896_SNP [dm3] 2R_21694391_SNP [dm6]	T	C	4.694e^-5	0.549	INTRON CngB	TF binding site mE1_TFBS_cad
3L	9079851	3L_9079851_SNP [dm3] 3L_9086751_SNP [dm6]	G	A	4.701e^-5	0.549	NON_SYNONYMOUS_CODING Tequila INTRON Tequila
2R	3423168	2R_3423168_SNP [dm3] 2R_7535663_SNP [dm6]	C	A	4.712e^-5	0.549	UTR_3_PRIME Cyt-b5 UPSTREAM CG2137
3R	27122844	3R_27122844_SNP [dm3] 3R_31297122_SNP [dm6]	G	A	4.718e^-5	0.549	INTERGENIC
3R	3575590	3R_3575590_SNP [dm3] 3R_7749868_SNP [dm6]	T	A	4.732e^-5	0.549	INTRON pyd3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	4263457	3R_4263457_SNP [dm3] 3R_8437735_SNP [dm6]	G	T	4.756e^-5	0.549	INTRON CG45263
3R	16552789	3R_16552789_SNP [dm3] 3R_20727067_SNP [dm6]	A	T	4.805e^-5	0.549	INTERGENIC
2L	6111280	2L_6111280_SNP [dm3] 2L_6111280_SNP [dm6]	G	T	4.808e^-5	0.549	INTRON stai
3L	5726422	3L_5726422_SNP [dm3] 3L_5733322_SNP [dm6]	T	G	4.846e^-5	0.55	INTRON sif
X	4221416	X_4221416_SNP [dm3] X_4327383_SNP [dm6]	C	G	4.919e^-5	0.552	NON_SYNONYMOUS_CODING CG12693 INTRON norpA	TF binding site BDTNP1_TFBS_twi
3L	2102909	3L_2102909_SNP [dm3] 3L_2102909_SNP [dm6]	A	G	4.922e^-5	0.552	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5383349	3L_5383349_SNP [dm3] 3L_5390249_SNP [dm6]	A	C	5.043e^-5	0.562	INTERGENIC
3L	2413221	3L_2413221_DEL [dm3] 3L_2413221_DEL [dm6]	CAT	C	5.071e^-5	0.562	UPSTREAM CG45186 INTRON CG45186
3R	3507845	3R_3507845_SNP [dm3] 3R_7682123_SNP [dm6]	T	C	5.157e^-5	0.566	INTRON Nlg1
2R	11512331	2R_11512331_SNP [dm3] 2R_15624826_SNP [dm6]	T	G	5.168e^-5	0.566	INTRON CG42524
3R	14552210	3R_14552210_SNP [dm3] 3R_18726488_SNP [dm6]	C	T	5.211e^-5	0.566	UPSTREAM CG7714 INTRON Cha
3L	2459915	3L_2459915_SNP [dm3] 3L_2459915_SNP [dm6]	A	T	5.248e^-5	0.566	SYNONYMOUS_CODING CG45186 UTR_5_PRIME CG45186
3L	6766193	3L_6766193_SNP [dm3] 3L_6773093_SNP [dm6]	C	G	5.259e^-5	0.566	INTERGENIC
3R	24537450	3R_24537450_SNP [dm3] 3R_28711728_SNP [dm6]	G	T	5.306e^-5	0.567	INTRON htt
2R	17581888	2R_17581888_SNP [dm3] 2R_21694383_SNP [dm6]	T	C	5.414e^-5	0.576	INTRON CngB	TF binding site mE1_TFBS_cad
3R	16843356	3R_16843356_SNP [dm3] 3R_21017634_SNP [dm6]	T	C	5.501e^-5	0.579	UPSTREAM Rlip DOWNSTREAM CG5697 INTERGENIC	TF binding site mE1_TFBS_cad
3L	17166931	3L_17166931_SNP [dm3] 3L_17173831_SNP [dm6]	A	T	5.526e^-5	0.579	INTRON Rbp6
3L	4161300	3L_4161300_INS [dm3] 3L_4161300_INS [dm6]	C	CTTGGGTGCC	5.563e^-5	0.579	UPSTREAM nab DOWNSTREAM mas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	11418494	3L_11418494_SNP [dm3] 3L_11425394_SNP [dm6]	T	C	5.571e^-5	0.579	SYNONYMOUS_CODING CG7560	TF binding site mE1_TFBS_cad
3R	10669792	3R_10669792_SNP [dm3] 3R_14844070_SNP [dm6]	T	C	5.606e^-5	0.579	UPSTREAM CG3610 INTRON btsz
2R	11509861	2R_11509861_SNP [dm3] 2R_15622356_SNP [dm6]	T	C	5.716e^-5	0.587	INTRON CG42524	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25360126	3R_25360126_DEL [dm3] 3R_29534404_DEL [dm6]	AAA	A	5.856e^-5	0.597	UPSTREAM CR43613 INTERGENIC
2L	6251617	2L_6251617_SNP [dm3] 2L_6251617_SNP [dm6]	A	T	5.871e^-5	0.597	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	3871445	2L_3871445_SNP [dm3] 2L_3871445_SNP [dm6]	G	T	5.929e^-5	0.599	UTR_3_PRIME CG31957 DOWNSTREAM CG31957 & 1 other	TF binding site mE1_TFBS_sens
2L	4351311	2L_4351311_SNP [dm3] 2L_4351311_SNP [dm6]	C	T	6.042e^-5	0.606	EXON CR44700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4681068	3L_4681068_SNP [dm3] 3L_4681068_SNP [dm6]	A	G	6.060e^-5	0.606	INTRON axo
3R	16843523	3R_16843523_SNP [dm3] 3R_21017801_SNP [dm6]	G	A	6.086e^-5	0.606	SYNONYMOUS_CODING Rlip DOWNSTREAM CG5697	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16843326	3R_16843326_DEL [dm3] 3R_21017604_DEL [dm6]	TT	T	6.259e^-5	0.619	UPSTREAM Rlip DOWNSTREAM CG5697 INTERGENIC	TF binding site mE1_TFBS_cad
2L	20520362	2L_20520362_SNP [dm3] 2L_20520362_SNP [dm6]	C	T	6.370e^-5	0.623	INTERGENIC
2L	2763428	2L_2763428_SNP [dm3] 2L_2763428_SNP [dm6]	T	A	6.379e^-5	0.623	UTR_3_PRIME Trn-SR & 1 other DOWNSTREAM CG3077
X	17889536	X_17889536_SNP [dm3] X_17995503_SNP [dm6]	T	A	6.427e^-5	0.623	INTRON Sh
3R	24233223	3R_24233223_SNP [dm3] 3R_28407501_SNP [dm6]	A	G	6.428e^-5	0.623	INTERGENIC
3R	22999536	3R_22999536_SNP [dm3] 3R_27173814_SNP [dm6]	C	T	6.471e^-5	0.624	INTRON Ser	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25443997	3R_25443997_SNP [dm3] 3R_29618275_SNP [dm6]	C	T	6.596e^-5	0.631	UPSTREAM CG1907 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	2799324	3R_2799324_SNP [dm3] 3R_6973602_SNP [dm6]	A	G	6.642e^-5	0.631	INTRON Antp	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	8702252	2R_8702252_SNP [dm3] 2R_12814747_SNP [dm6]	A	G	6.649e^-5	0.631	INTERGENIC
3L	4680960	3L_4680960_SNP [dm3] 3L_4680960_SNP [dm6]	T	G	6.701e^-5	0.633	INTRON axo
2R	11509870	2R_11509870_SNP [dm3] 2R_15622365_SNP [dm6]	G	A	6.873e^-5	0.643	INTRON CG42524	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10752250	3R_10752250_INS [dm3] 3R_14926528_INS [dm6]	C	CA	7.010e^-5	0.643	INTERGENIC
3R	2799329	3R_2799329_SNP [dm3] 3R_6973607_SNP [dm6]	T	C	7.010e^-5	0.643	INTRON Antp	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	8534692	3L_8534692_INS [dm3] 3L_8541592_INS [dm6]	A	AAA	7.018e^-5	0.643	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	22823773	3R_22823773_SNP [dm3] 3R_26998051_SNP [dm6]	C	T	7.088e^-5	0.643	INTRON RYa-R
X	10253192	X_10253192_SNP [dm3] X_10359159_SNP [dm6]	T	G	7.103e^-5	0.643	INTRON l_1_G0289
X	10253293	X_10253293_SNP [dm3] X_10359260_SNP [dm6]	T	A	7.103e^-5	0.643	INTRON l_1_G0289	TF binding site mE1_TFBS_chinmo
2L	3813530	2L_3813530_SNP [dm3] 2L_3813530_SNP [dm6]	A	T	7.118e^-5	0.643	UPSTREAM CG3407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
2R	7626818	2R_7626818_SNP [dm3] 2R_11739313_SNP [dm6]	T	C	7.135e^-5	0.643	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23632023	3R_23632023_DEL [dm3] 3R_27806301_DEL [dm6]	GGTTTCCTGCGCTGCTG...	G	7.198e^-5	0.643	INTRON CG34353
2R	15396586	2R_15396586_SNP [dm3] 2R_19509081_SNP [dm6]	C	T	7.228e^-5	0.643	SYNONYMOUS_CODING Ir56b UPSTREAM Ir56c
X	9220509	X_9220509_SNP [dm3] X_9326476_SNP [dm6]	T	G	7.262e^-5	0.643	UTR_3_PRIME CG34449 DOWNSTREAM CG34449
2L	8429877	2L_8429877_SNP [dm3] 2L_8429877_SNP [dm6]	C	T	7.272e^-5	0.643	INTRON Akap200	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
2R	1577386	2R_1577386_SNP [dm3] 2R_5689881_SNP [dm6]	T	C	7.333e^-5	0.643	INTRON scaf
3R	10679184	3R_10679184_SNP [dm3] 3R_14853462_SNP [dm6]	A	T	7.349e^-5	0.643	INTRON btsz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	12540675	3L_12540675_DEL [dm3] 3L_12547575_DEL [dm6]	TA	T	7.362e^-5	0.643	INTRON sowah
2R	11532519	2R_11532519_DEL [dm3] 2R_15645014_DEL [dm6]	GACAGAGCGTCCT...	G	7.469e^-5	0.648	INTRON CG42524	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sbb
3R	10748842	3R_10748842_INS [dm3] 3R_14923120_INS [dm6]	G	GGTGCTTGCATAG...	7.554e^-5	0.648	DOWNSTREAM CR45598 & 1 other INTERGENIC
3R	16588925	3R_16588925_SNP [dm3] 3R_20763203_SNP [dm6]	A	T	7.586e^-5	0.648	UPSTREAM CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10679116	3R_10679116_SNP [dm3] 3R_14853394_SNP [dm6]	C	T	7.616e^-5	0.648	INTRON btsz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	12591419	3L_12591419_SNP [dm3] 3L_12598319_SNP [dm6]	T	G	7.621e^-5	0.648	INTERGENIC
X	9220548	X_9220548_SNP [dm3] X_9326515_SNP [dm6]	A	T	7.631e^-5	0.648	UTR_3_PRIME CG34449 DOWNSTREAM CG34449
3L	1996106	3L_1996106_SNP [dm3] 3L_1996106_SNP [dm6]	T	C	7.786e^-5	0.655	INTERGENIC
2R	11510932	2R_11510932_INS [dm3] 2R_15623427_INS [dm6]	C	CCTC	7.797e^-5	0.655	INTRON CG42524	TF binding site mE1_TFBS_chinmo
3R	25159787	3R_25159787_SNP [dm3] 3R_29334065_SNP [dm6]	C	A	7.812e^-5	0.655	INTERGENIC
3R	24179750	3R_24179750_SNP [dm3] 3R_28354028_SNP [dm6]	G	T	8.108e^-5	0.676	DOWNSTREAM Or98b INTERGENIC
3R	26659962	3R_26659962_SNP [dm3] 3R_30834240_SNP [dm6]	G	A	8.172e^-5	0.679	INTRON CG15544
3L	17166836	3L_17166836_SNP [dm3] 3L_17173736_SNP [dm6]	A	T	8.357e^-5	0.68	INTRON Rbp6
X	17889554	X_17889554_SNP [dm3] X_17995521_SNP [dm6]	A	T	8.395e^-5	0.68	INTRON Sh
3R	10668744	3R_10668744_SNP [dm3] 3R_14843022_SNP [dm6]	C	G	8.436e^-5	0.68	INTRON btsz
2R	15396205	2R_15396205_SNP [dm3] 2R_19508700_SNP [dm6]	T	C	8.442e^-5	0.68	SYNONYMOUS_CODING Ir56b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10770668	3R_10770668_SNP [dm3] 3R_14944946_SNP [dm6]	A	G	8.451e^-5	0.68	INTERGENIC
3R	17537964	3R_17537964_SNP [dm3] 3R_21712242_SNP [dm6]	C	A	8.512e^-5	0.68	INTRON CG31176
2R	4173744	2R_4173744_SNP [dm3] 2R_8286239_SNP [dm6]	G	T	8.534e^-5	0.68	INTERGENIC
3R	26935258	3R_26935258_SNP [dm3] 3R_31109536_SNP [dm6]	T	C	8.537e^-5	0.68	UPSTREAM CG11318 INTERGENIC
X	13817638	X_13817638_SNP [dm3] X_13923605_SNP [dm6]	T	C	8.550e^-5	0.68	INTRON mamo
3L	12540678	3L_12540678_SNP [dm3] 3L_12547578_SNP [dm6]	T	G	8.640e^-5	0.68	INTRON sowah
2L	1460456	2L_1460456_SNP [dm3] 2L_1460456_SNP [dm6]	T	C	8.668e^-5	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
2L	1664979	2L_1664979_SNP [dm3] 2L_1664979_SNP [dm6]	A	G	8.696e^-5	0.68	INTRON chinmo
3R	24550228	3R_24550228_SNP [dm3] 3R_28724506_SNP [dm6]	A	G	8.701e^-5	0.68	INTRON htt
3L	1996387	3L_1996387_DEL [dm3] 3L_1996387_DEL [dm6]	CA	G	8.704e^-5	0.68	INTERGENIC
2L	2818208	2L_2818208_SNP [dm3] 2L_2818208_SNP [dm6]	G	A	8.812e^-5	0.686	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	11839131	X_11839131_SNP [dm3] X_11945098_SNP [dm6]	G	A	8.935e^-5	0.686	INTRON cac
2R	19324769	2R_19324769_SNP [dm3] 2R_23437246_SNP [dm6]	T	A	8.957e^-5	0.686	INTERGENIC
2L	975923	2L_975923_SNP [dm3] 2L_975923_SNP [dm6]	T	C	8.978e^-5	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	3443611	3R_3443611_SNP [dm3] 3R_7617889_SNP [dm6]	T	G	9.004e^-5	0.686	INTRON CG34127
2L	22335726	2L_22335726_SNP [dm3] 2L_22335726_SNP [dm6]	G	T	9.040e^-5	0.686	INTRON CG17018	transposable element FlyBase
2L	14440632	2L_14440632_SNP [dm3] 2L_14440632_SNP [dm6]	A	T	9.082e^-5	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25157860	3R_25157860_SNP [dm3] 3R_29332138_SNP [dm6]	T	A	9.204e^-5	0.686	INTERGENIC
3L	12062645	3L_12062645_SNP [dm3] 3L_12069545_SNP [dm6]	C	T	9.241e^-5	0.686	SYNONYMOUS_CODING Sema-5c	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11511812	2R_11511812_MNP [dm3] 2R_15624307_MNP [dm6]	ATCTTTTC	GAAAAGAT	9.255e^-5	0.686	INTRON CG42524	TF binding site mE1_TFBS_chinmo
3L	14313157	3L_14313157_SNP [dm3] 3L_14320057_SNP [dm6]	A	C	9.280e^-5	0.686	INTRON fz
3L	8534733	3L_8534733_SNP [dm3] 3L_8541633_SNP [dm6]	A	G	9.290e^-5	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	4251912	3R_4251912_SNP [dm3] 3R_8426190_SNP [dm6]	A	G	9.296e^-5	0.686	INTRON CG45263
3R	4251921	3R_4251921_SNP [dm3] 3R_8426199_SNP [dm6]	T	A	9.296e^-5	0.686	INTRON CG45263
3R	23890549	3R_23890549_SNP [dm3] 3R_28064827_SNP [dm6]	G	C	9.384e^-5	0.69	INTRON CG34362
2R	10464325	2R_10464325_INS [dm3] 2R_14576820_INS [dm6]	C	CC	9.439e^-5	0.69	INTRON ttv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	2596666	X_2596666_SNP [dm3] X_2702633_SNP [dm6]	G	A	9.454e^-5	0.69	SYNONYMOUS_CODING Csat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9269573	2L_9269573_SNP [dm3] 2L_9269573_SNP [dm6]	C	T	9.751e^-5	0.697	INTRON Ggamma30A
X	8542562	X_8542562_SNP [dm3] X_8648529_SNP [dm6]	C	T	9.813e^-5	0.697	INTRON oc	silencer mE1_HDAC_PRE
2R	3679801	2R_3679801_SNP [dm3] 2R_7792296_SNP [dm6]	A	G	9.825e^-5	0.697	SYNONYMOUS_CODING Gapdh1	TF binding site mE1_TFBS_HSA
X	10273633	X_10273633_SNP [dm3] X_10379600_SNP [dm6]	G	A	9.838e^-5	0.697	SYNONYMOUS_CODING CG32681 INTRON CG17841
2R	7845679	2R_7845679_SNP [dm3] 2R_11958174_SNP [dm6]	C	G	9.848e^-5	0.697	INTRON CG13188
3L	9794126	3L_9794126_DEL [dm3] 3L_9801026_DEL [dm6]	AA	A	9.911e^-5	0.697	DOWNSTREAM Ilp3 & 1 other INTRON CG32052
3L	9604660	3L_9604660_SNP [dm3] 3L_9611560_SNP [dm6]	C	T	9.931e^-5	0.697	SPLICE_SITE_REGION CG3280 SYNONYMOUS_CODING CG3280
3R	26935482	3R_26935482_SNP [dm3] 3R_31109760_SNP [dm6]	A	C	9.975e^-5	0.697	UPSTREAM CG11318 INTERGENIC
2L	19813582	2L_19813582_SNP [dm3] 2L_19813582_SNP [dm6]	A	T	9.976e^-5	0.697	DOWNSTREAM CG13962 & 1 other INTRON sick
3R	3332898	3R_3332898_SNP [dm3] 3R_7507176_SNP [dm6]	A	T	1.002e^-4	0.697	INTERGENIC
2L	7241509	2L_7241509_SNP [dm3] 2L_7241509_SNP [dm6]	C	A	1.004e^-4	0.697	INTRON Ndae1
X	19702497	X_19702497_SNP [dm3] X_19808464_SNP [dm6]	A	G	1.004e^-4	0.697	INTERGENIC
3L	8759310	3L_8759310_SNP [dm3] 3L_8766210_SNP [dm6]	A	C	1.004e^-4	0.697	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	17889488	X_17889488_SNP [dm3] X_17995455_SNP [dm6]	C	A	1.020e^-4	0.7	INTRON Sh
X	17889528	X_17889528_SNP [dm3] X_17995495_SNP [dm6]	C	G	1.020e^-4	0.7	INTRON Sh
3R	26935257	3R_26935257_SNP [dm3] 3R_31109535_SNP [dm6]	C	T	1.021e^-4	0.7	UPSTREAM CG11318 INTERGENIC
2L	10247351	2L_10247351_SNP [dm3] 2L_10247351_SNP [dm6]	T	A	1.023e^-4	0.7	UPSTREAM chico DOWNSTREAM bsk INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1926162	X_1926162_SNP [dm3] X_2032129_SNP [dm6]	C	T	1.026e^-4	0.7	INTRON Actn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	10648706	3L_10648706_SNP [dm3] 3L_10655606_SNP [dm6]	T	A	1.033e^-4	0.7	INTRON CG32066
3L	13683282	3L_13683282_SNP [dm3] 3L_13690182_SNP [dm6]	A	T	1.035e^-4	0.7	INTRON bru-3
3R	17015467	3R_17015467_DEL [dm3] 3R_21189745_DEL [dm6]	CGAAAGAGATTCTCATCTGT...	C	1.042e^-4	0.701	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl
2L	8638805	2L_8638805_INS [dm3] 2L_8638805_INS [dm6]	T	TT	1.046e^-4	0.701	INTRON Sema-1a	TF binding site mE1_TFBS_inv
3L	16454798	3L_16454798_SNP [dm3] 3L_16461698_SNP [dm6]	A	T	1.048e^-4	0.701	INTRON CG33158
2L	1460341	2L_1460341_SNP [dm3] 2L_1460341_SNP [dm6]	G	A	1.051e^-4	0.701	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
X	10863787	X_10863787_SNP [dm3] X_10969754_SNP [dm6]	A	G	1.069e^-4	0.71	INTRON CG42339
3R	21717893	3R_21717893_SNP [dm3] 3R_25892171_SNP [dm6]	G	A	1.073e^-4	0.71	INTRON Lnk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	839805	2L_839805_SNP [dm3] 2L_839805_SNP [dm6]	A	T	1.090e^-4	0.715	INTRON drongo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4681457	3L_4681457_SNP [dm3] 3L_4681457_SNP [dm6]	C	T	1.091e^-4	0.715	UTR_5_PRIME axo INTRON axo
2L	9438393	2L_9438393_SNP [dm3] 2L_9438393_SNP [dm6]	A	G	1.093e^-4	0.715	INTRON numb	TF binding site BDTNP1_TFBS_dl
3L	11420896	3L_11420896_INS [dm3] 3L_11427796_INS [dm6]	A	ATGT	1.102e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	5751445	2L_5751445_SNP [dm3] 2L_5751445_SNP [dm6]	G	T	1.104e^-4	0.715	INTRON CG11030	TF binding site BDTNP1_TFBS_twi
2L	22335994	2L_22335994_SNP [dm3] 2L_22335994_SNP [dm6]	G	A	1.105e^-4	0.715	INTRON CG17018	transposable element FlyBase
3R	13109359	3R_13109359_SNP [dm3] 3R_17283637_SNP [dm6]	G	A	1.106e^-4	0.715	UPSTREAM CG31418 INTERGENIC
3R	26935472	3R_26935472_SNP [dm3] 3R_31109750_SNP [dm6]	C	A	1.114e^-4	0.717	UPSTREAM CG11318 INTERGENIC
3L	6348308	3L_6348308_SNP [dm3] 3L_6355208_SNP [dm6]	G	C	1.120e^-4	0.717	INTERGENIC
2L	662136	2L_662136_SNP [dm3] 2L_662136_SNP [dm6]	C	T	1.124e^-4	0.717	INTRON ds
2L	10780923	2L_10780923_DEL [dm3] 2L_10780923_DEL [dm6]	TC	T	1.126e^-4	0.717	INTRON CG31869
2L	3863452	2L_3863452_SNP [dm3] 2L_3863452_SNP [dm6]	G	A	1.134e^-4	0.719	INTRON CG3964	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3L	17166827	3L_17166827_SNP [dm3] 3L_17173727_SNP [dm6]	A	T	1.136e^-4	0.719	INTRON Rbp6
2L	8499631	2L_8499631_SNP [dm3] 2L_8499631_SNP [dm6]	C	T	1.148e^-4	0.72	INTRON Dh31
3R	22011214	3R_22011214_SNP [dm3] 3R_26185492_SNP [dm6]	G	C	1.152e^-4	0.72	UTR_5_PRIME CG31086 UTR_3_PRIME CG31323 UPSTREAM CG31086 DOWNSTREAM CG31323
2R	18644556	2R_18644556_SNP [dm3] 2R_22757051_SNP [dm6]	A	C	1.157e^-4	0.72	INTRON CG42260 & 1 other
3L	7407692	3L_7407692_SNP [dm3] 3L_7414592_SNP [dm6]	T	A	1.157e^-4	0.72	INTERGENIC
3L	9770209	3L_9770209_SNP [dm3] 3L_9777109_SNP [dm6]	C	T	1.157e^-4	0.72	INTRON CG8177
X	8784778	X_8784778_SNP [dm3] X_8890745_SNP [dm6]	A	T	1.165e^-4	0.721	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	17803938	3R_17803938_SNP [dm3] 3R_21978216_SNP [dm6]	G	A	1.177e^-4	0.721	INTRON Eip93F
3R	7108536	3R_7108536_SNP [dm3] 3R_11282814_SNP [dm6]	C	A	1.183e^-4	0.721	INTRON CR31386
3L	8437823	3L_8437823_DEL [dm3] 3L_8444723_DEL [dm6]	ACTA	A	1.187e^-4	0.721	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9678709	2L_9678709_SNP [dm3] 2L_9678709_SNP [dm6]	C	T	1.195e^-4	0.721	INTERGENIC
3L	17166910	3L_17166910_SNP [dm3] 3L_17173810_SNP [dm6]	G	A	1.196e^-4	0.721	INTRON Rbp6
3L	6342034	3L_6342034_SNP [dm3] 3L_6348934_SNP [dm6]	A	T	1.203e^-4	0.721	INTRON CG13300
2R	15786653	2R_15786653_SNP [dm3] 2R_19899148_SNP [dm6]	C	T	1.206e^-4	0.721	UPSTREAM CR44572 INTERGENIC
3L	12593567	3L_12593567_SNP [dm3] 3L_12600467_SNP [dm6]	T	C	1.215e^-4	0.721	INTERGENIC
2L	1881317	2L_1881317_SNP [dm3] 2L_1881317_SNP [dm6]	C	G	1.224e^-4	0.721	UTR_5_PRIME CG31663 UPSTREAM CG31663 DOWNSTREAM CG15358
3L	14523305	3L_14523305_INS [dm3] 3L_14530205_INS [dm6]	T	TTTAGGAAAATGTT...	1.225e^-4	0.721	INTRON bbg
2R	3508450	2R_3508450_SNP [dm3] 2R_7620945_SNP [dm6]	A	T	1.230e^-4	0.721	UPSTREAM CG1358 DOWNSTREAM CR44444 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	3508452	2R_3508452_SNP [dm3] 2R_7620947_SNP [dm6]	C	A	1.230e^-4	0.721	UPSTREAM CG1358 DOWNSTREAM CR44444 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	1005976	3L_1005976_SNP [dm3] 3L_1005976_SNP [dm6]	G	A	1.231e^-4	0.721	INTRON trio
3R	3425269	3R_3425269_SNP [dm3] 3R_7599547_SNP [dm6]	T	A	1.235e^-4	0.721	INTRON CG34127
3L	12593081	3L_12593081_SNP [dm3] 3L_12599981_SNP [dm6]	C	T	1.255e^-4	0.721	INTERGENIC
3L	12593185	3L_12593185_SNP [dm3] 3L_12600085_SNP [dm6]	T	G	1.255e^-4	0.721	INTERGENIC
3L	17155223	3L_17155223_SNP [dm3] 3L_17162123_SNP [dm6]	T	C	1.255e^-4	0.721	INTRON Rbp6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14451000	2L_14451000_SNP [dm3] 2L_14451000_SNP [dm6]	A	C	1.258e^-4	0.721	UPSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
3L	12543270	3L_12543270_SNP [dm3] 3L_12550170_SNP [dm6]	C	T	1.260e^-4	0.721	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15177759	3L_15177759_SNP [dm3] 3L_15184659_SNP [dm6]	C	A	1.266e^-4	0.721	INTERGENIC
2L	3028427	2L_3028427_SNP [dm3] 2L_3028427_SNP [dm6]	T	C	1.267e^-4	0.721	NON_SYNONYMOUS_CODING CG3605 UPSTREAM CG17219	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	4221405	X_4221405_SNP [dm3] X_4327372_SNP [dm6]	C	T	1.267e^-4	0.721	SYNONYMOUS_CODING CG12693 INTRON norpA	TF binding site BDTNP1_TFBS_twi
3R	26989050	3R_26989050_SNP [dm3] 3R_31163328_SNP [dm6]	G	A	1.270e^-4	0.721	INTRON Gycbeta100B & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5644187	3L_5644187_SNP [dm3] 3L_5651087_SNP [dm6]	G	C	1.271e^-4	0.721	UTR_3_PRIME Blimp-1
X	17932568	X_17932568_SNP [dm3] X_18038535_SNP [dm6]	C	T	1.276e^-4	0.721	INTRON Sh
3R	22176440	3R_22176440_SNP [dm3] 3R_26350718_SNP [dm6]	T	G	1.277e^-4	0.721	INTRON CG33970
2L	15154890	2L_15154890_SNP [dm3] 2L_15154890_SNP [dm6]	G	T	1.280e^-4	0.721	INTERGENIC
3L	11382586	3L_11382586_DEL [dm3] 3L_11389486_DEL [dm6]	GAACAG	G	1.285e^-4	0.721	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7845697	2R_7845697_SNP [dm3] 2R_11958192_SNP [dm6]	G	A	1.286e^-4	0.721	INTRON CG13188
2R	8702111	2R_8702111_SNP [dm3] 2R_12814606_SNP [dm6]	C	T	1.287e^-4	0.721	INTERGENIC
3L	16245081	3L_16245081_SNP [dm3] 3L_16251981_SNP [dm6]	G	T	1.288e^-4	0.721	SYNONYMOUS_CODING CG13055	TF binding site mE1_TFBS_chinmo
3R	3417139	3R_3417139_SNP [dm3] 3R_7591417_SNP [dm6]	T	G	1.292e^-4	0.721	INTRON CG34127
3R	16571741	3R_16571741_SNP [dm3] 3R_20746019_SNP [dm6]	G	A	1.298e^-4	0.721	UPSTREAM CG31200 INTRON CG42322	TF binding site mE1_TFBS_cad
3R	2787882	3R_2787882_SNP [dm3] 3R_6962160_SNP [dm6]	G	C	1.306e^-4	0.721	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	15548897	2L_15548897_SNP [dm3] 2L_15548897_SNP [dm6]	C	A	1.311e^-4	0.721	UPSTREAM CR45728 DOWNSTREAM Skadu INTERGENIC
3R	23561801	3R_23561801_SNP [dm3] 3R_27736079_SNP [dm6]	G	C	1.313e^-4	0.721	UPSTREAM Ets98B INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15385054	3R_15385054_SNP [dm3] 3R_19559332_SNP [dm6]	A	C	1.314e^-4	0.721	INTRON Dys
3R	24758818	3R_24758818_SNP [dm3] 3R_28933096_SNP [dm6]	A	G	1.315e^-4	0.721	INTRON CG14521
2L	17499061	2L_17499061_SNP [dm3] 2L_17499061_SNP [dm6]	A	C	1.325e^-4	0.721	UPSTREAM CG15142 DOWNSTREAM CG6412 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6928378	2R_6928378_SNP [dm3] 2R_11040873_SNP [dm6]	G	C	1.337e^-4	0.721	INTRON luna
2L	19799977	2L_19799977_SNP [dm3] 2L_19799977_SNP [dm6]	A	C	1.344e^-4	0.721	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4024167	3L_4024167_SNP [dm3] 3L_4024167_SNP [dm6]	G	A	1.345e^-4	0.721	SYNONYMOUS_CODING CG11594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13664537	3L_13664537_SNP [dm3] 3L_13671437_SNP [dm6]	T	G	1.346e^-4	0.721	INTRON bru-3
3R	25545440	3R_25545440_SNP [dm3] 3R_29719718_SNP [dm6]	T	A	1.347e^-4	0.721	INTRON CG15506	regulatory region REDfly_CRMs
3L	10686780	3L_10686780_SNP [dm3] 3L_10693680_SNP [dm6]	T	C	1.349e^-4	0.721	UPSTREAM CG33493 DOWNSTREAM NijA INTRON CG6463	TF binding site BDTNP1_TFBS_Med
X	6680553	X_6680553_SNP [dm3] X_6786520_SNP [dm6]	C	A	1.352e^-4	0.721	SYNONYMOUS_CODING C3G	TF binding site mE1_TFBS_chinmo
3L	13470135	3L_13470135_SNP [dm3] 3L_13477035_SNP [dm6]	C	A	1.360e^-4	0.721	UPSTREAM stv INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	23535991	3R_23535991_SNP [dm3] 3R_27710269_SNP [dm6]	G	T	1.363e^-4	0.721	SPLICE_SITE_REGION CG12877 INTRON CG12877
2L	6198022	2L_6198022_SNP [dm3] 2L_6198022_SNP [dm6]	C	A	1.367e^-4	0.721	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6198041	2L_6198041_SNP [dm3] 2L_6198041_SNP [dm6]	T	G	1.367e^-4	0.721	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25320881	3R_25320881_SNP [dm3] 3R_29495159_SNP [dm6]	A	T	1.371e^-4	0.721	DOWNSTREAM Diedel INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3R	24473407	3R_24473407_SNP [dm3] 3R_28647685_SNP [dm6]	C	G	1.380e^-4	0.721	INTERGENIC
2R	6266534	2R_6266534_SNP [dm3] 2R_10379029_SNP [dm6]	C	G	1.380e^-4	0.721	NON_SYNONYMOUS_CODING Ir47a INTRON CG42732
2L	10149878	2L_10149878_DEL [dm3] 2L_10149878_DEL [dm6]	CTAAC	C	1.380e^-4	0.721	INTRON CG44153 & 1 other
3R	23490152	3R_23490152_SNP [dm3] 3R_27664430_SNP [dm6]	C	G	1.387e^-4	0.721	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad
2R	9584260	2R_9584260_INS [dm3] 2R_13696755_INS [dm6]	A	AA	1.390e^-4	0.721	INTRON fas
2L	17790746	2L_17790746_SNP [dm3] 2L_17790746_SNP [dm6]	A	G	1.391e^-4	0.721	INTRON CadN2
2R	7845692	2R_7845692_SNP [dm3] 2R_11958187_SNP [dm6]	C	T	1.392e^-4	0.721	INTRON CG13188
2R	17081686	2R_17081686_SNP [dm3] 2R_21194181_SNP [dm6]	C	A	1.392e^-4	0.721	INTRON Lapsyn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
3R	10676060	3R_10676060_SNP [dm3] 3R_14850338_SNP [dm6]	A	T	1.409e^-4	0.728	INTRON btsz
2R	6689527	2R_6689527_SNP [dm3] 2R_10802022_SNP [dm6]	T	C	1.416e^-4	0.73	INTRON wde	transposable element FlyBase
2L	3813601	2L_3813601_SNP [dm3] 2L_3813601_SNP [dm6]	T	C	1.423e^-4	0.732	UPSTREAM CG3407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7529164	3L_7529164_SNP [dm3] 3L_7536064_SNP [dm6]	C	T	1.430e^-4	0.732	NON_SYNONYMOUS_CODING lqf INTRON lqf
X	8542410	X_8542410_SNP [dm3] X_8648377_SNP [dm6]	C	G	1.435e^-4	0.732	INTRON oc	silencer mE1_HDAC_PRE
2L	17006138	2L_17006138_SNP [dm3] 2L_17006138_SNP [dm6]	G	A	1.444e^-4	0.732	INTERGENIC
2L	622853	2L_622853_SNP [dm3] 2L_622853_SNP [dm6]	T	C	1.450e^-4	0.732	UPSTREAM CR44797 INTERGENIC
3L	1388203	3L_1388203_DEL [dm3] 3L_1388203_DEL [dm6]	CTTAAGAGACATC...	C	1.454e^-4	0.732	DOWNSTREAM ru INTRON Ptp61F
X	17674658	X_17674658_SNP [dm3] X_17780625_SNP [dm6]	G	A	1.456e^-4	0.732	INTERGENIC
3R	13650102	3R_13650102_SNP [dm3] 3R_17824380_SNP [dm6]	A	T	1.461e^-4	0.732	INTRON tinc
2L	3086321	2L_3086321_SNP [dm3] 2L_3086321_SNP [dm6]	C	T	1.463e^-4	0.732	UTR_5_PRIME toc INTRON toc
3R	15385072	3R_15385072_SNP [dm3] 3R_19559350_SNP [dm6]	G	A	1.463e^-4	0.732	INTRON Dys
2R	7041740	2R_7041740_SNP [dm3] 2R_11154235_SNP [dm6]	G	C	1.465e^-4	0.732	UPSTREAM CG13230 INTRON CG13229
3L	13664122	3L_13664122_SNP [dm3] 3L_13671022_SNP [dm6]	T	C	1.468e^-4	0.732	INTRON bru-3
2L	9514009	2L_9514009_DEL [dm3] 2L_9514009_DEL [dm6]	GG	G	1.486e^-4	0.732	INTRON CG33298
3L	5355132	3L_5355132_SNP [dm3] 3L_5362032_SNP [dm6]	A	G	1.487e^-4	0.732	DOWNSTREAM Uev1A INTRON CG4769
2R	11509854	2R_11509854_SNP [dm3] 2R_15622349_SNP [dm6]	C	T	1.492e^-4	0.732	INTRON CG42524	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9678705	2L_9678705_SNP [dm3] 2L_9678705_SNP [dm6]	T	A	1.498e^-4	0.732	INTERGENIC
X	8542564	X_8542564_SNP [dm3] X_8648531_SNP [dm6]	A	T	1.501e^-4	0.732	INTRON oc	silencer mE1_HDAC_PRE
2L	3410557	2L_3410557_SNP [dm3] 2L_3410557_SNP [dm6]	T	G	1.506e^-4	0.732	UPSTREAM CG8840 INTRON pgant2
3L	7407718	3L_7407718_SNP [dm3] 3L_7414618_SNP [dm6]	A	T	1.515e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	7407766	3L_7407766_INS [dm3] 3L_7414666_INS [dm6]	T	TTTGCCAAAAT...	1.515e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	22776141	3R_22776141_SNP [dm3] 3R_26950419_SNP [dm6]	T	A	1.519e^-4	0.732	UTR_3_PRIME CG6330 DOWNSTREAM CG18472	TF binding site mE1_TFBS_cad
2L	22325080	2L_22325080_SNP [dm3] 2L_22325080_SNP [dm6]	C	T	1.523e^-4	0.732	INTRON CG17018	transposable element FlyBase
2L	22325084	2L_22325084_SNP [dm3] 2L_22325084_SNP [dm6]	T	C	1.523e^-4	0.732	INTRON CG17018	transposable element FlyBase
3L	8699839	3L_8699839_SNP [dm3] 3L_8706739_SNP [dm6]	A	G	1.535e^-4	0.732	INTERGENIC
3R	24161290	3R_24161290_SNP [dm3] 3R_28335568_SNP [dm6]	A	C	1.538e^-4	0.732	UPSTREAM larp INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	10155646	2L_10155646_SNP [dm3] 2L_10155646_SNP [dm6]	C	A	1.539e^-4	0.732	UTR_3_PRIME CG4839 DOWNSTREAM CG4839 INTRON CG44153
3R	22826935	3R_22826935_SNP [dm3] 3R_27001213_SNP [dm6]	C	T	1.543e^-4	0.732	SYNONYMOUS_CODING CG31077 INTRON RYa-R	TF binding site mE1_TFBS_sens
3R	21440991	3R_21440991_SNP [dm3] 3R_25615269_SNP [dm6]	G	T	1.546e^-4	0.732	DOWNSTREAM CG5079 INTRON Npl4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11884475	3L_11884475_SNP [dm3] 3L_11891375_SNP [dm6]	T	A	1.553e^-4	0.732	INTRON CG44837
3L	10506844	3L_10506844_SNP [dm3] 3L_10513744_SNP [dm6]	A	T	1.561e^-4	0.732	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl
3L	16442370	3L_16442370_SNP [dm3] 3L_16449270_SNP [dm6]	G	A	1.564e^-4	0.732	INTRON CG33158 & 1 other
3R	27513354	3R_27513354_SNP [dm3] 3R_31687632_SNP [dm6]	C	A	1.578e^-4	0.732	DOWNSTREAM CR45564 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8206076	3L_8206076_SNP [dm3] 3L_8212976_SNP [dm6]	A	C	1.578e^-4	0.732	NON_SYNONYMOUS_CODING CG8006	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17253456	X_17253456_SNP [dm3] X_17359423_SNP [dm6]	T	A	1.581e^-4	0.732	INTERGENIC
3L	16439827	3L_16439827_SNP [dm3] 3L_16446727_SNP [dm6]	G	A	1.581e^-4	0.732	INTRON CG33158 & 1 other
2L	16753627	2L_16753627_DEL [dm3] 2L_16753627_DEL [dm6]	TT	T	1.591e^-4	0.732	UTR_3_PRIME CG17912 UPSTREAM yellow-b
2L	3813622	2L_3813622_SNP [dm3] 2L_3813622_SNP [dm6]	T	C	1.592e^-4	0.732	UPSTREAM CG3407 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16843885	3R_16843885_SNP [dm3] 3R_21018163_SNP [dm6]	T	C	1.597e^-4	0.732	SYNONYMOUS_CODING Rlip	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15146868	2L_15146868_SNP [dm3] 2L_15146868_SNP [dm6]	T	G	1.601e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6921190	2R_6921190_SNP [dm3] 2R_11033685_SNP [dm6]	T	A	1.606e^-4	0.732	INTRON luna	TF binding site BDTNP1_TFBS_da
2L	19183054	2L_19183054_SNP [dm3] 2L_19183054_SNP [dm6]	G	A	1.607e^-4	0.732	UPSTREAM CG42688 DOWNSTREAM CR17567 & 1 other INTERGENIC
2L	19183394	2L_19183394_DEL [dm3] 2L_19183394_DEL [dm6]	TTTTATTTTGTCTTGGGGAA...	A	1.607e^-4	0.732	SPLICE_SITE_REGION CR17567 UPSTREAM CG42688 DOWNSTREAM gammaTub37C EXON CR17567
2L	19194321	2L_19194321_SNP [dm3] 2L_19194321_SNP [dm6]	T	G	1.607e^-4	0.732	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	5966446	2L_5966446_SNP [dm3] 2L_5966446_SNP [dm6]	G	T	1.612e^-4	0.732	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6850089	2R_6850089_SNP [dm3] 2R_10962584_SNP [dm6]	A	G	1.615e^-4	0.732	INTERGENIC
3L	9805849	3L_9805849_SNP [dm3] 3L_9812749_SNP [dm6]	A	G	1.624e^-4	0.732	INTERGENIC
3L	8573978	3L_8573978_SNP [dm3] 3L_8580878_SNP [dm6]	A	G	1.628e^-4	0.732	INTRON CG43078
3L	17285275	3L_17285275_SNP [dm3] 3L_17292175_SNP [dm6]	G	C	1.629e^-4	0.732	INTERGENIC
2R	11905184	2R_11905184_SNP [dm3] 2R_16017679_SNP [dm6]	A	T	1.632e^-4	0.732	UPSTREAM CG8399 & 1 other INTERGENIC
2L	19198106	2L_19198106_SNP [dm3] 2L_19198106_SNP [dm6]	C	T	1.642e^-4	0.732	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18545107	3L_18545107_SNP [dm3] 3L_18552007_SNP [dm6]	C	T	1.644e^-4	0.732	INTERGENIC
2L	989621	2L_989621_SNP [dm3] 2L_989621_SNP [dm6]	T	C	1.649e^-4	0.732	EXON CR44801	TF binding site mE1_TFBS_chinmo
2L	989637	2L_989637_DEL [dm3] 2L_989637_DEL [dm6]	GG	G	1.649e^-4	0.732	EXON CR44801	TF binding site mE1_TFBS_chinmo
3L	11990090	3L_11990090_SNP [dm3] 3L_11996990_SNP [dm6]	T	C	1.650e^-4	0.732	INTRON Grip163	TF binding site mE1_TFBS_sens
3R	12333818	3R_12333818_SNP [dm3] 3R_16508096_SNP [dm6]	C	G	1.659e^-4	0.732	INTRON CG42342	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	2425593	3L_2425593_SNP [dm3] 3L_2425593_SNP [dm6]	G	A	1.661e^-4	0.732	INTRON CG45186	TF binding site mE1_TFBS_bab1
X	2598847	X_2598847_SNP [dm3] X_2704814_SNP [dm6]	T	C	1.672e^-4	0.732	UPSTREAM Csat INTRON eIF2B-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6251661	2L_6251661_SNP [dm3] 2L_6251661_SNP [dm6]	G	A	1.674e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	11631310	2R_11631310_SNP [dm3] 2R_15743805_SNP [dm6]	G	A	1.675e^-4	0.732	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22137402	3L_22137402_SNP [dm3] 3L_22144302_SNP [dm6]	C	A	1.682e^-4	0.732	INTRON olf413	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9801545	3L_9801545_SNP [dm3] 3L_9808445_SNP [dm6]	T	G	1.684e^-4	0.732	UTR_3_PRIME CG32052	TF binding site BDTNP1_TFBS_twi
X	9486581	X_9486581_SNP [dm3] X_9592548_SNP [dm6]	A	G	1.684e^-4	0.732	INTERGENIC
3L	1996412	3L_1996412_SNP [dm3] 3L_1996412_SNP [dm6]	T	C	1.685e^-4	0.732	INTERGENIC
X	19872714	X_19872714_SNP [dm3] X_19978681_SNP [dm6]	A	T	1.693e^-4	0.732	INTERGENIC
3R	3134201	3R_3134201_SNP [dm3] 3R_7308479_SNP [dm6]	G	C	1.694e^-4	0.732	SPLICE_SITE_REGION rn INTRON rn
3R	23776357	3R_23776357_SNP [dm3] 3R_27950635_SNP [dm6]	T	C	1.697e^-4	0.732	INTRON Gp93	TF binding site mE1_TFBS_cad
3L	7407699	3L_7407699_SNP [dm3] 3L_7414599_SNP [dm6]	C	T	1.700e^-4	0.732	INTERGENIC
3R	25158343	3R_25158343_SNP [dm3] 3R_29332621_SNP [dm6]	G	T	1.708e^-4	0.732	INTERGENIC
2L	1247689	2L_1247689_SNP [dm3] 2L_1247689_SNP [dm6]	T	C	1.709e^-4	0.732	INTERGENIC
3L	5383378	3L_5383378_SNP [dm3] 3L_5390278_SNP [dm6]	A	T	1.721e^-4	0.732	INTERGENIC
3L	8759291	3L_8759291_SNP [dm3] 3L_8766191_SNP [dm6]	A	T	1.725e^-4	0.732	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	3583559	3R_3583559_SNP [dm3] 3R_7757837_SNP [dm6]	A	G	1.728e^-4	0.732	UPSTREAM CG10919 INTERGENIC
3R	13298110	3R_13298110_SNP [dm3] 3R_17472388_SNP [dm6]	A	T	1.732e^-4	0.732	INTERGENIC
2L	19177766	2L_19177766_SNP [dm3] 2L_19177766_SNP [dm6]	C	A	1.740e^-4	0.732	UTR_3_PRIME brat
3L	8700101	3L_8700101_SNP [dm3] 3L_8707001_SNP [dm6]	A	C	1.758e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_cad
3R	13649911	3R_13649911_SNP [dm3] 3R_17824189_SNP [dm6]	C	T	1.758e^-4	0.732	INTRON tinc
3L	1018253	3L_1018253_SNP [dm3] 3L_1018253_SNP [dm6]	T	C	1.764e^-4	0.732	INTRON trio
3L	9393249	3L_9393249_SNP [dm3] 3L_9400149_SNP [dm6]	A	G	1.766e^-4	0.732	SYNONYMOUS_CODING eIF-4E UPSTREAM CG4080	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9678515	2L_9678515_SNP [dm3] 2L_9678515_SNP [dm6]	C	G	1.769e^-4	0.732	INTERGENIC
3L	11233114	3L_11233114_SNP [dm3] 3L_11240014_SNP [dm6]	C	G	1.771e^-4	0.732	INTERGENIC
2L	6191575	2L_6191575_DEL [dm3] 2L_6191575_DEL [dm6]	CCCGAAATGAA...	TGTTCATTT	1.772e^-4	0.732	INTRON CG34380	TF binding site mE1_TFBS_inv
3R	25431617	3R_25431617_SNP [dm3] 3R_29605895_SNP [dm6]	T	A	1.782e^-4	0.732	INTRON alph
3R	3498127	3R_3498127_SNP [dm3] 3R_7672405_SNP [dm6]	C	A	1.783e^-4	0.732	INTRON Nlg1
3R	19407291	3R_19407291_SNP [dm3] 3R_23581569_SNP [dm6]	G	A	1.783e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3R	19416216	3R_19416216_SNP [dm3] 3R_23590494_SNP [dm6]	C	T	1.792e^-4	0.732	NON_SYNONYMOUS_CODING CG33337 UPSTREAM CG10182
X	20370005	X_20370005_SNP [dm3] X_20498978_SNP [dm6]	G	A	1.796e^-4	0.732	INTRON RhoGAP19D
2R	1385485	2R_1385485_SNP [dm3] 2R_5497980_SNP [dm6]	C	T	1.796e^-4	0.732	INTRON CG30438	transposable element FlyBase
3R	26091728	3R_26091728_SNP [dm3] 3R_30266006_SNP [dm6]	G	T	1.799e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26935263	3R_26935263_SNP [dm3] 3R_31109541_SNP [dm6]	A	G	1.802e^-4	0.732	UPSTREAM CG11318 INTERGENIC
3R	22823783	3R_22823783_SNP [dm3] 3R_26998061_SNP [dm6]	C	A	1.803e^-4	0.732	INTRON RYa-R
X	5845672	X_5845672_SNP [dm3] X_5951639_SNP [dm6]	G	T	1.807e^-4	0.732	UTR_3_PRIME CG32755 UPSTREAM CG6048
X	8518961	X_8518961_SNP [dm3] X_8624928_SNP [dm6]	A	G	1.820e^-4	0.732	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	13664118	3L_13664118_SNP [dm3] 3L_13671018_SNP [dm6]	T	G	1.826e^-4	0.732	INTRON bru-3
X	21085304	X_21085304_SNP [dm3] X_21214277_SNP [dm6]	A	G	1.838e^-4	0.732	INTRON CG32521
X	21085319	X_21085319_SNP [dm3] X_21214292_SNP [dm6]	G	C	1.838e^-4	0.732	INTRON CG32521
X	12533620	X_12533620_SNP [dm3] X_12639587_SNP [dm6]	C	T	1.841e^-4	0.732	INTRON Tomosyn	TF binding site BDTNP1_TFBS_da
3L	1473125	3L_1473125_DEL [dm3] 3L_1473125_DEL [dm6]	TT	T	1.844e^-4	0.732	UTR_5_PRIME Ptp61F
3L	9367686	3L_9367686_SNP [dm3] 3L_9374586_SNP [dm6]	C	T	1.850e^-4	0.732	SYNONYMOUS_CODING Hsp22 UTR_3_PRIME Hsp67Bb UPSTREAM CG4461 DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	3508724	3R_3508724_SNP [dm3] 3R_7683002_SNP [dm6]	T	C	1.851e^-4	0.732	INTRON Nlg1
2L	17006150	2L_17006150_SNP [dm3] 2L_17006150_SNP [dm6]	A	T	1.872e^-4	0.732	INTERGENIC
X	1000122	X_1000122_SNP [dm3] X_1106089_SNP [dm6]	G	A	1.878e^-4	0.732	INTRON CG3655	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	8325955	2L_8325955_SNP [dm3] 2L_8325955_SNP [dm6]	A	T	1.879e^-4	0.732	UPSTREAM CG7781 INTERGENIC
2R	15926650	2R_15926650_SNP [dm3] 2R_20039145_SNP [dm6]	G	T	1.879e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7184977	3L_7184977_INS [dm3] 3L_7191877_INS [dm6]	G	GG	1.880e^-4	0.732	INTERGENIC
3L	8699834	3L_8699834_SNP [dm3] 3L_8706734_SNP [dm6]	T	A	1.883e^-4	0.732	INTERGENIC
X	17253451	X_17253451_SNP [dm3] X_17359418_SNP [dm6]	T	A	1.884e^-4	0.732	INTERGENIC
3L	4082357	3L_4082357_SNP [dm3] 3L_4082357_SNP [dm6]	G	T	1.886e^-4	0.732	INTRON Gad1
3L	9392360	3L_9392360_SNP [dm3] 3L_9399260_SNP [dm6]	G	C	1.888e^-4	0.732	UPSTREAM CG4080 DOWNSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	22137355	3L_22137355_SNP [dm3] 3L_22144255_SNP [dm6]	C	T	1.888e^-4	0.732	INTRON olf413	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	10310173	X_10310173_SNP [dm3] X_10416140_SNP [dm6]	A	G	1.889e^-4	0.732	INTRON CG32683
3L	16455868	3L_16455868_SNP [dm3] 3L_16462768_SNP [dm6]	C	A	1.894e^-4	0.732	INTRON CG33158	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18716475	2R_18716475_SNP [dm3] 2R_22828952_SNP [dm6]	G	A	1.903e^-4	0.732	UPSTREAM CG30272 DOWNSTREAM CG30274 & 1 other INTERGENIC
3R	23036235	3R_23036235_DEL [dm3] 3R_27210513_DEL [dm6]	GAGGATCCG	G	1.909e^-4	0.732	INTERGENIC
3R	10118106	3R_10118106_SNP [dm3] 3R_14292384_SNP [dm6]	G	A	1.910e^-4	0.732	INTRON CG12207
2L	17065538	2L_17065538_SNP [dm3] 2L_17065538_SNP [dm6]	A	T	1.924e^-4	0.732	INTERGENIC
3R	3568915	3R_3568915_INS [dm3] 3R_7743193_INS [dm6]	A	AGTATTA	1.928e^-4	0.732	INTERGENIC
3L	2413135	3L_2413135_SNP [dm3] 3L_2413135_SNP [dm6]	A	G	1.930e^-4	0.732	UPSTREAM CG45186 INTRON CG45186
3R	4251951	3R_4251951_SNP [dm3] 3R_8426229_SNP [dm6]	A	T	1.933e^-4	0.732	INTRON CG45263
3R	24215748	3R_24215748_SNP [dm3] 3R_28390026_SNP [dm6]	C	T	1.938e^-4	0.732	INTERGENIC
3R	24224906	3R_24224906_SNP [dm3] 3R_28399184_SNP [dm6]	G	A	1.938e^-4	0.732	INTERGENIC
2R	11511190	2R_11511190_SNP [dm3] 2R_15623685_SNP [dm6]	G	A	1.954e^-4	0.732	INTRON CG42524	TF binding site mE1_TFBS_chinmo
3R	19415995	3R_19415995_SNP [dm3] 3R_23590273_SNP [dm6]	T	A	1.956e^-4	0.732	SYNONYMOUS_CODING CG33337 UPSTREAM CG10182
2R	7845671	2R_7845671_SNP [dm3] 2R_11958166_SNP [dm6]	C	A	1.956e^-4	0.732	INTRON CG13188
3L	8879027	3L_8879027_DEL [dm3] 3L_8885927_DEL [dm6]	TTG	T	1.965e^-4	0.732	INTRON dally
2L	4495426	2L_4495426_SNP [dm3] 2L_4495426_SNP [dm6]	G	A	1.975e^-4	0.732	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10762280	3R_10762280_SNP [dm3] 3R_14936558_SNP [dm6]	T	C	1.983e^-4	0.732	INTERGENIC
3R	25264685	3R_25264685_SNP [dm3] 3R_29438963_SNP [dm6]	A	G	1.994e^-4	0.732	INTRON Ptp99A
2L	839972	2L_839972_SNP [dm3] 2L_839972_SNP [dm6]	C	T	1.997e^-4	0.732	INTRON drongo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7625470	3L_7625470_SNP [dm3] 3L_7632370_SNP [dm6]	C	G	2.008e^-4	0.732	INTRON CG33275	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21964687	3R_21964687_SNP [dm3] 3R_26138965_SNP [dm6]	G	T	2.012e^-4	0.732	INTERGENIC
2L	2399369	2L_2399369_SNP [dm3] 2L_2399369_SNP [dm6]	C	T	2.018e^-4	0.732	UPSTREAM VGlut INTRON VGlut
2R	11538056	2R_11538056_SNP [dm3] 2R_15650551_SNP [dm6]	C	G	2.024e^-4	0.732	DOWNSTREAM CG42524 INTRON CG42524
3R	23379665	3R_23379665_SNP [dm3] 3R_27553943_SNP [dm6]	T	A	2.035e^-4	0.732	INTRON Klp98A
3L	17471829	3L_17471829_SNP [dm3] 3L_17478729_SNP [dm6]	G	T	2.039e^-4	0.732	SYNONYMOUS_CODING CG13733 UPSTREAM qjt
2R	466193	2R_466193_SNP [dm3] 2R_4578688_SNP [dm6]	C	T	2.042e^-4	0.732	INTERGENIC
3L	12673144	3L_12673144_SNP [dm3] 3L_12680044_SNP [dm6]	T	G	2.044e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12673208	3L_12673208_SNP [dm3] 3L_12680108_SNP [dm6]	G	T	2.044e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12673212	3L_12673212_SNP [dm3] 3L_12680112_SNP [dm6]	T	G	2.044e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_cad
3R	27000059	3R_27000059_SNP [dm3] 3R_31174337_SNP [dm6]	T	C	2.048e^-4	0.732	INTRON Gycbeta100B
3R	22826988	3R_22826988_SNP [dm3] 3R_27001266_SNP [dm6]	G	A	2.049e^-4	0.732	NON_SYNONYMOUS_CODING CG31077 INTRON RYa-R	TF binding site mE1_TFBS_sens
3L	22116021	3L_22116021_SNP [dm3] 3L_22122921_SNP [dm6]	A	G	2.056e^-4	0.732	DOWNSTREAM CR45236 & 1 other INTERGENIC
2L	20034545	2L_20034545_SNP [dm3] 2L_20034545_SNP [dm6]	C	A	2.058e^-4	0.732	INTRON sNPF
3L	17175427	3L_17175427_SNP [dm3] 3L_17182327_SNP [dm6]	T	A	2.064e^-4	0.732	INTRON Rbp6
3R	3543614	3R_3543614_SNP [dm3] 3R_7717892_SNP [dm6]	A	G	2.066e^-4	0.732	INTERGENIC
X	1000186	X_1000186_SNP [dm3] X_1106153_SNP [dm6]	G	A	2.071e^-4	0.732	INTRON CG3655	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	12333952	3R_12333952_SNP [dm3] 3R_16508230_SNP [dm6]	A	G	2.073e^-4	0.732	INTRON CG42342	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	1030825	2L_1030825_SNP [dm3] 2L_1030825_SNP [dm6]	G	A	2.075e^-4	0.732	INTRON IA-2
3L	13062880	3L_13062880_SNP [dm3] 3L_13069780_SNP [dm6]	A	C	2.083e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19188184	3R_19188184_SNP [dm3] 3R_23362462_SNP [dm6]	G	A	2.083e^-4	0.732	SYNONYMOUS_CODING CG4408	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4008347	2L_4008347_SNP [dm3] 2L_4008347_SNP [dm6]	G	A	2.084e^-4	0.732	UPSTREAM CG43774 DOWNSTREAM CG43773 INTERGENIC
3L	16274820	3L_16274820_SNP [dm3] 3L_16281720_SNP [dm6]	C	T	2.084e^-4	0.732	SYNONYMOUS_CODING CG13049 DOWNSTREAM CG13064	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15644634	3R_15644634_SNP [dm3] 3R_19818912_SNP [dm6]	A	T	2.087e^-4	0.732	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9630162	2L_9630162_SNP [dm3] 2L_9630162_SNP [dm6]	C	T	2.088e^-4	0.732	INTERGENIC
X	16000796	X_16000796_SNP [dm3] X_16106763_SNP [dm6]	C	A	2.092e^-4	0.732	INTERGENIC
2R	20033026	2R_20033026_SNP [dm3] 2R_24145503_SNP [dm6]	G	T	2.097e^-4	0.732	INTRON Dat
X	11670969	X_11670969_SNP [dm3] X_11776936_SNP [dm6]	G	T	2.099e^-4	0.732	INTRON dy	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	8295219	2L_8295219_SNP [dm3] 2L_8295219_SNP [dm6]	T	C	2.105e^-4	0.732	INTRON Btk29A EXON CR43752
2R	7277041	2R_7277041_SNP [dm3] 2R_11389536_SNP [dm6]	A	G	2.110e^-4	0.732	UPSTREAM CG30022 INTRON sprt
2L	3813521	2L_3813521_SNP [dm3] 2L_3813521_SNP [dm6]	C	A	2.111e^-4	0.732	UPSTREAM CG3407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
2L	8871158	2L_8871158_SNP [dm3] 2L_8871158_SNP [dm6]	T	C	2.111e^-4	0.732	INTERGENIC
2L	913909	2L_913909_SNP [dm3] 2L_913909_SNP [dm6]	C	T	2.117e^-4	0.732	UPSTREAM GluRIIC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	8784781	X_8784781_SNP [dm3] X_8890748_SNP [dm6]	C	G	2.123e^-4	0.732	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	10838513	2R_10838513_SNP [dm3] 2R_14951008_SNP [dm6]	G	A	2.127e^-4	0.732	UPSTREAM aPKC INTRON aPKC
2L	7675766	2L_7675766_SNP [dm3] 2L_7675766_SNP [dm6]	A	G	2.135e^-4	0.732	UPSTREAM Slob INTRON Myo28B1
3L	18053098	3L_18053098_SNP [dm3] 3L_18059998_SNP [dm6]	G	C	2.142e^-4	0.732	UTR_5_PRIME Eip75B UPSTREAM Eip75B
2L	1474359	2L_1474359_SNP [dm3] 2L_1474359_SNP [dm6]	C	T	2.144e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5122670	3R_5122670_SNP [dm3] 3R_9296948_SNP [dm6]	G	A	2.145e^-4	0.732	INTRON CG8861
2R	19370186	2R_19370186_SNP [dm3] 2R_23482663_SNP [dm6]	T	A	2.153e^-4	0.732	INTRON CG43795
2L	1020984	2L_1020984_SNP [dm3] 2L_1020984_SNP [dm6]	A	T	2.165e^-4	0.732	INTRON IA-2
2R	10994259	2R_10994259_SNP [dm3] 2R_15106754_SNP [dm6]	T	C	2.170e^-4	0.732	INTERGENIC
3L	10506943	3L_10506943_SNP [dm3] 3L_10513843_SNP [dm6]	G	A	2.172e^-4	0.732	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6932937	2R_6932937_SNP [dm3] 2R_11045432_SNP [dm6]	T	C	2.174e^-4	0.732	INTRON luna
3L	17166893	3L_17166893_SNP [dm3] 3L_17173793_SNP [dm6]	T	A	2.180e^-4	0.732	INTRON Rbp6
3L	17166897	3L_17166897_SNP [dm3] 3L_17173797_SNP [dm6]	A	G	2.180e^-4	0.732	INTRON Rbp6
3L	17166901	3L_17166901_SNP [dm3] 3L_17173801_SNP [dm6]	A	C	2.180e^-4	0.732	INTRON Rbp6
3L	17166902	3L_17166902_SNP [dm3] 3L_17173802_SNP [dm6]	T	G	2.180e^-4	0.732	INTRON Rbp6
3L	17166914	3L_17166914_INS [dm3] 3L_17173814_INS [dm6]	T	AAC	2.180e^-4	0.732	INTRON Rbp6
3L	17166920	3L_17166920_MNP [dm3] 3L_17173820_MNP [dm6]	AAC	GGT	2.180e^-4	0.732	INTRON Rbp6
3L	17166934	3L_17166934_INS [dm3] 3L_17173834_INS [dm6]	A	AA	2.180e^-4	0.732	INTRON Rbp6
3L	17166939	3L_17166939_SNP [dm3] 3L_17173839_SNP [dm6]	A	T	2.180e^-4	0.732	INTRON Rbp6
3L	17166943	3L_17166943_SNP [dm3] 3L_17173843_SNP [dm6]	A	T	2.180e^-4	0.732	INTRON Rbp6
3L	17166944	3L_17166944_SNP [dm3] 3L_17173844_SNP [dm6]	T	A	2.180e^-4	0.732	INTRON Rbp6
3R	23117780	3R_23117780_SNP [dm3] 3R_27292058_SNP [dm6]	A	G	2.181e^-4	0.732	DOWNSTREAM Hmu INTRON CG3348
3L	13689109	3L_13689109_SNP [dm3] 3L_13696009_SNP [dm6]	G	C	2.185e^-4	0.732	INTRON bru-3
3L	7407700	3L_7407700_SNP [dm3] 3L_7414600_SNP [dm6]	G	C	2.190e^-4	0.732	INTERGENIC
3L	7407764	3L_7407764_SNP [dm3] 3L_7414664_SNP [dm6]	G	A	2.190e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	7407802	3L_7407802_SNP [dm3] 3L_7414702_SNP [dm6]	T	C	2.190e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	7407805	3L_7407805_SNP [dm3] 3L_7414705_SNP [dm6]	G	A	2.190e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	7407819	3L_7407819_SNP [dm3] 3L_7414719_SNP [dm6]	A	T	2.190e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	3764586	2L_3764586_SNP [dm3] 2L_3764586_SNP [dm6]	G	C	2.193e^-4	0.732	SYNONYMOUS_CODING CG43707 UPSTREAM CG43703	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1020801	3L_1020801_SNP [dm3] 3L_1020801_SNP [dm6]	G	A	2.193e^-4	0.732	INTRON trio
3L	1020811	3L_1020811_SNP [dm3] 3L_1020811_SNP [dm6]	C	A	2.193e^-4	0.732	INTRON trio
2L	3485465	2L_3485465_SNP [dm3] 2L_3485465_SNP [dm6]	G	C	2.195e^-4	0.732	INTRON CG15414
2L	19057159	2L_19057159_SNP [dm3] 2L_19057159_SNP [dm6]	G	A	2.195e^-4	0.732	NON_SYNONYMOUS_CODING CG10492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4008956	2L_4008956_SNP [dm3] 2L_4008956_SNP [dm6]	C	T	2.207e^-4	0.732	NON_SYNONYMOUS_CODING CG43774 DOWNSTREAM CG43773
3R	25151795	3R_25151795_SNP [dm3] 3R_29326073_SNP [dm6]	A	G	2.209e^-4	0.732	INTERGENIC
2R	14532301	2R_14532301_SNP [dm3] 2R_18644796_SNP [dm6]	C	A	2.218e^-4	0.732	INTRON SP2637	TF binding site BDTNP1_TFBS_da
3L	9794174	3L_9794174_SNP [dm3] 3L_9801074_SNP [dm6]	A	G	2.220e^-4	0.732	DOWNSTREAM Ilp3 & 1 other INTRON CG32052
X	19274941	X_19274941_SNP [dm3] X_19380908_SNP [dm6]	C	T	2.223e^-4	0.732	INTRON kek5
X	22071110	X_22071110_SNP [dm3] X_22669274_SNP [dm6]	T	A	2.228e^-4	0.732	INTRON CR44997
3L	13257097	3L_13257097_SNP [dm3] 3L_13263997_SNP [dm6]	A	C	2.230e^-4	0.732	INTRON caps	enhancer mE1_CBP_Enhancers
3L	12673180	3L_12673180_SNP [dm3] 3L_12680080_SNP [dm6]	A	T	2.231e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12673183	3L_12673183_SNP [dm3] 3L_12680083_SNP [dm6]	A	T	2.231e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12673185	3L_12673185_SNP [dm3] 3L_12680085_SNP [dm6]	A	T	2.231e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12673198	3L_12673198_SNP [dm3] 3L_12680098_SNP [dm6]	C	T	2.231e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10686732	3L_10686732_SNP [dm3] 3L_10693632_SNP [dm6]	G	A	2.232e^-4	0.732	UPSTREAM CG33493 DOWNSTREAM NijA INTRON CG6463	TF binding site BDTNP1_TFBS_Med
2L	18381618	2L_18381618_SNP [dm3] 2L_18381618_SNP [dm6]	A	G	2.239e^-4	0.732	INTRON Fas3
2L	3870582	2L_3870582_SNP [dm3] 2L_3870582_SNP [dm6]	T	G	2.247e^-4	0.732	DOWNSTREAM CG31957 INTRON Cep97	TF binding site mE1_TFBS_sens
2L	2645902	2L_2645902_SNP [dm3] 2L_2645902_SNP [dm6]	T	C	2.255e^-4	0.732	UPSTREAM CR43852 DOWNSTREAM CG9962 INTERGENIC
2L	14252170	2L_14252170_SNP [dm3] 2L_14252170_SNP [dm6]	C	T	2.256e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	853691	2R_853691_DEL [dm3] 2R_4966186_DEL [dm6]	CTT	A	2.267e^-4	0.732	INTRON Ir41a	transposable element FlyBase
3L	11202777	3L_11202777_SNP [dm3] 3L_11209677_SNP [dm6]	G	A	2.270e^-4	0.732	SYNONYMOUS_CODING Ube3a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
X	9791605	X_9791605_SNP [dm3] X_9897572_SNP [dm6]	G	A	2.279e^-4	0.732	INTRON CG15249
X	8821081	X_8821081_SNP [dm3] X_8927048_SNP [dm6]	C	T	2.281e^-4	0.732	INTRON rdgA
3L	7736324	3L_7736324_SNP [dm3] 3L_7743224_SNP [dm6]	T	G	2.285e^-4	0.732	UPSTREAM Snmp2 INTRON CG32373
3L	13687114	3L_13687114_SNP [dm3] 3L_13694014_SNP [dm6]	C	T	2.292e^-4	0.732	INTRON bru-3
2R	3679890	2R_3679890_SNP [dm3] 2R_7792385_SNP [dm6]	A	G	2.295e^-4	0.732	SYNONYMOUS_CODING Gapdh1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2336163	2L_2336163_SNP [dm3] 2L_2336163_SNP [dm6]	A	G	2.303e^-4	0.732	INTRON CG9967 & 1 other
2R	9248994	2R_9248994_INS [dm3] 2R_13361489_INS [dm6]	A	ATTTA	2.307e^-4	0.732	DOWNSTREAM CR45312 INTERGENIC
X	20310196	X_20310196_SNP [dm3] X_20439169_SNP [dm6]	G	T	2.314e^-4	0.732	INTRON CG1695	TF binding site mE1_TFBS_chinmo
2R	6689479	2R_6689479_SNP [dm3] 2R_10801974_SNP [dm6]	A	C	2.316e^-4	0.732	INTRON wde	transposable element FlyBase
3L	13643924	3L_13643924_SNP [dm3] 3L_13650824_SNP [dm6]	A	G	2.317e^-4	0.732	INTRON bru-3
3R	9759823	3R_9759823_SNP [dm3] 3R_13934101_SNP [dm6]	C	G	2.317e^-4	0.732	INTERGENIC
3R	26532243	3R_26532243_SNP [dm3] 3R_30706521_SNP [dm6]	C	T	2.319e^-4	0.732	UPSTREAM CG31010 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	1996393	3L_1996393_SNP [dm3] 3L_1996393_SNP [dm6]	A	G	2.330e^-4	0.732	INTERGENIC
2R	18885599	2R_18885599_SNP [dm3] 2R_22998076_SNP [dm6]	A	G	2.337e^-4	0.732	INTRON twi & 1 other
3L	8699671	3L_8699671_SNP [dm3] 3L_8706571_SNP [dm6]	T	C	2.346e^-4	0.732	INTERGENIC
3L	633975	3L_633975_SNP [dm3] 3L_633975_SNP [dm6]	A	T	2.354e^-4	0.732	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25159896	3R_25159896_SNP [dm3] 3R_29334174_SNP [dm6]	T	G	2.357e^-4	0.732	INTERGENIC
2L	539462	2L_539462_SNP [dm3] 2L_539462_SNP [dm6]	A	G	2.370e^-4	0.732	INTRON ush	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	7991876	2L_7991876_SNP [dm3] 2L_7991876_SNP [dm6]	C	T	2.372e^-4	0.732	UPSTREAM pes INTRON pes	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	17006179	2L_17006179_SNP [dm3] 2L_17006179_SNP [dm6]	A	T	2.377e^-4	0.732	INTERGENIC
3L	13714676	3L_13714676_DEL [dm3] 3L_13721576_DEL [dm6]	CGGTTGGG	T	2.378e^-4	0.732	INTRON bru-3
3L	2723790	3L_2723790_SNP [dm3] 3L_2723790_SNP [dm6]	A	G	2.378e^-4	0.732	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1373634	2R_1373634_SNP [dm3] 2R_5486129_SNP [dm6]	C	T	2.379e^-4	0.732	INTRON CG30440
X	8104946	X_8104946_SNP [dm3] X_8210913_SNP [dm6]	G	A	2.381e^-4	0.732	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	24233139	3R_24233139_SNP [dm3] 3R_28407417_SNP [dm6]	T	C	2.381e^-4	0.732	INTERGENIC
2R	11511187	2R_11511187_SNP [dm3] 2R_15623682_SNP [dm6]	G	A	2.388e^-4	0.732	INTRON CG42524	TF binding site mE1_TFBS_chinmo
3L	7080611	3L_7080611_DEL [dm3] 3L_7087511_DEL [dm6]	TT	T	2.392e^-4	0.732	UPSTREAM Cpr65Ea DOWNSTREAM Cpr65Eb INTERGENIC	TF binding site mE1_TFBS_inv
2R	1226652	2R_1226652_SNP [dm3] 2R_5339147_SNP [dm6]	T	A	2.397e^-4	0.732	DOWNSTREAM CG10465 INTERGENIC
2L	511349	2L_511349_SNP [dm3] 2L_511349_SNP [dm6]	A	G	2.398e^-4	0.732	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	19198305	2L_19198305_SNP [dm3] 2L_19198305_SNP [dm6]	G	C	2.410e^-4	0.732	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22082165	3L_22082165_DEL [dm3] 3L_22089065_DEL [dm6]	GAAAGAAAAACGCTTATAAA...	G	2.422e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	8542556	X_8542556_SNP [dm3] X_8648523_SNP [dm6]	G	A	2.422e^-4	0.732	INTRON oc	silencer mE1_HDAC_PRE
3L	12673090	3L_12673090_SNP [dm3] 3L_12679990_SNP [dm6]	T	G	2.435e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12673098	3L_12673098_SNP [dm3] 3L_12679998_SNP [dm6]	C	G	2.435e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_cad
3R	22823862	3R_22823862_SNP [dm3] 3R_26998140_SNP [dm6]	G	T	2.437e^-4	0.732	INTRON RYa-R
2R	12934887	2R_12934887_SNP [dm3] 2R_17047382_SNP [dm6]	G	T	2.438e^-4	0.732	SYNONYMOUS_CODING CG9642 DOWNSTREAM CG9640
3R	10717444	3R_10717444_SNP [dm3] 3R_14891722_SNP [dm6]	C	T	2.451e^-4	0.732	SPLICE_SITE_REGION CG3731 SYNONYMOUS_CODING CG3731 DOWNSTREAM CG7265	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21721824	3R_21721824_SNP [dm3] 3R_25896102_SNP [dm6]	C	T	2.457e^-4	0.732	SYNONYMOUS_CODING CG5948
3R	24162046	3R_24162046_SNP [dm3] 3R_28336324_SNP [dm6]	A	C	2.475e^-4	0.732	UTR_5_PRIME larp UPSTREAM larp DOWNSTREAM Gfat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3532472	3L_3532472_SNP [dm3] 3L_3532472_SNP [dm6]	T	A	2.478e^-4	0.732	INTRON Eip63E
3R	16588795	3R_16588795_SNP [dm3] 3R_20763073_SNP [dm6]	T	A	2.479e^-4	0.732	UPSTREAM CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_dl
3R	17728417	3R_17728417_SNP [dm3] 3R_21902695_SNP [dm6]	G	A	2.490e^-4	0.732	INTRON CG6678	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	3460893	3R_3460893_SNP [dm3] 3R_7635171_SNP [dm6]	G	A	2.493e^-4	0.732	INTRON CG34127
3L	8759399	3L_8759399_SNP [dm3] 3L_8766299_SNP [dm6]	C	A	2.494e^-4	0.732	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	1247881	2R_1247881_DEL [dm3] 2R_5360376_DEL [dm6]	TTTACGAGA	G	2.500e^-4	0.732	UTR_3_PRIME CG10417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17580466	2R_17580466_SNP [dm3] 2R_21692961_SNP [dm6]	C	T	2.505e^-4	0.732	NON_SYNONYMOUS_CODING CngB DOWNSTREAM Ppcdc & 1 other	TF binding site mE1_TFBS_cad
X	4034798	X_4034798_INS [dm3] X_4140765_INS [dm6]	A	AA	2.509e^-4	0.732	UTR_3_PRIME Fas2 INTRON Fas2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7996546	2L_7996546_SNP [dm3] 2L_7996546_SNP [dm6]	C	T	2.516e^-4	0.732	SYNONYMOUS_CODING CG7227 DOWNSTREAM CR44996
3L	16442356	3L_16442356_INS [dm3] 3L_16449256_INS [dm6]	A	AGCACACTT	2.521e^-4	0.732	INTRON CG33158 & 1 other
2R	10015442	2R_10015442_SNP [dm3] 2R_14127937_SNP [dm6]	C	T	2.523e^-4	0.732	INTRON Prosap
2L	2820057	2L_2820057_SNP [dm3] 2L_2820057_SNP [dm6]	C	T	2.529e^-4	0.732	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_chinmo
X	6316748	X_6316748_SNP [dm3] X_6422715_SNP [dm6]	C	T	2.541e^-4	0.732	DOWNSTREAM CG42340 INTERGENIC
3L	8699114	3L_8699114_SNP [dm3] 3L_8706014_SNP [dm6]	G	C	2.544e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_cad
2R	12028780	2R_12028780_SNP [dm3] 2R_16141275_SNP [dm6]	G	A	2.548e^-4	0.732	SYNONYMOUS_CODING Got1 UPSTREAM CG30094	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	16588923	3R_16588923_INS [dm3] 3R_20763201_INS [dm6]	G	GCCGAAGCTTATATACCCTT...	2.548e^-4	0.732	UPSTREAM CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6270973	2R_6270973_SNP [dm3] 2R_10383468_SNP [dm6]	A	G	2.549e^-4	0.732	INTRON CG42732
X	8784733	X_8784733_SNP [dm3] X_8890700_SNP [dm6]	G	A	2.551e^-4	0.732	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	17166925	3L_17166925_SNP [dm3] 3L_17173825_SNP [dm6]	T	A	2.562e^-4	0.732	INTRON Rbp6
3L	9393419	3L_9393419_SNP [dm3] 3L_9400319_SNP [dm6]	T	C	2.568e^-4	0.732	INTRON eIF-4E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4545923	3L_4545923_SNP [dm3] 3L_4545923_SNP [dm6]	T	A	2.574e^-4	0.732	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4545925	3L_4545925_SNP [dm3] 3L_4545925_SNP [dm6]	C	A	2.574e^-4	0.732	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	3117881	3R_3117881_SNP [dm3] 3R_7292159_SNP [dm6]	T	A	2.583e^-4	0.732	INTRON rn
3R	24541306	3R_24541306_SNP [dm3] 3R_28715584_SNP [dm6]	G	A	2.584e^-4	0.732	INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	17506716	2L_17506716_SNP [dm3] 2L_17506716_SNP [dm6]	T	A	2.585e^-4	0.732	SYNONYMOUS_CODING Dhc36C
2L	4008955	2L_4008955_SNP [dm3] 2L_4008955_SNP [dm6]	T	A	2.593e^-4	0.732	NON_SYNONYMOUS_CODING CG43774 DOWNSTREAM CG43773
2L	20572278	2L_20572278_SNP [dm3] 2L_20572278_SNP [dm6]	A	C	2.594e^-4	0.732	INTRON CR45347
3R	3424495	3R_3424495_SNP [dm3] 3R_7598773_SNP [dm6]	G	T	2.597e^-4	0.732	INTRON CG34127
3R	13109364	3R_13109364_SNP [dm3] 3R_17283642_SNP [dm6]	C	T	2.597e^-4	0.732	UPSTREAM CG31418 INTERGENIC
3R	6257225	3R_6257225_SNP [dm3] 3R_10431503_SNP [dm6]	C	T	2.600e^-4	0.732	INTERGENIC
2R	7041696	2R_7041696_SNP [dm3] 2R_11154191_SNP [dm6]	T	C	2.607e^-4	0.732	UPSTREAM CG13230 INTRON CG13229
3R	22823779	3R_22823779_SNP [dm3] 3R_26998057_SNP [dm6]	T	G	2.607e^-4	0.732	INTRON RYa-R
2R	6929959	2R_6929959_SNP [dm3] 2R_11042454_SNP [dm6]	C	A	2.608e^-4	0.732	INTRON luna	TF binding site mE1_TFBS_cad
X	4221334	X_4221334_SNP [dm3] X_4327301_SNP [dm6]	C	T	2.616e^-4	0.732	NON_SYNONYMOUS_CODING CG12693 INTRON norpA	TF binding site BDTNP1_TFBS_twi
2L	4918222	2L_4918222_SNP [dm3] 2L_4918222_SNP [dm6]	T	C	2.616e^-4	0.732	INTRON hoe1
X	4271277	X_4271277_SNP [dm3] X_4377244_SNP [dm6]	T	C	2.617e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22137354	3L_22137354_SNP [dm3] 3L_22144254_SNP [dm6]	T	A	2.625e^-4	0.732	INTRON olf413	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11631410	2R_11631410_SNP [dm3] 2R_15743905_SNP [dm6]	C	T	2.626e^-4	0.732	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	2772192	2L_2772192_INS [dm3] 2L_2772192_INS [dm6]	G	GCTT	2.635e^-4	0.732	UPSTREAM CG15399 DOWNSTREAM Syt1 INTERGENIC
3R	25208461	3R_25208461_SNP [dm3] 3R_29382739_SNP [dm6]	C	T	2.646e^-4	0.732	INTRON Ptp99A
3L	18921661	3L_18921661_SNP [dm3] 3L_18928561_SNP [dm6]	T	C	2.654e^-4	0.732	INTRON CG32204	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3L	17166880	3L_17166880_SNP [dm3] 3L_17173780_SNP [dm6]	C	A	2.664e^-4	0.732	INTRON Rbp6
3L	17166888	3L_17166888_SNP [dm3] 3L_17173788_SNP [dm6]	G	A	2.664e^-4	0.732	INTRON Rbp6
3L	17166946	3L_17166946_INS [dm3] 3L_17173846_INS [dm6]	T	TTTAAA	2.664e^-4	0.732	INTRON Rbp6
3L	13469905	3L_13469905_SNP [dm3] 3L_13476805_SNP [dm6]	C	T	2.666e^-4	0.732	UPSTREAM stv INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	3421324	2R_3421324_SNP [dm3] 2R_7533819_SNP [dm6]	G	A	2.667e^-4	0.732	UPSTREAM Drat & 1 other INTRON Cyt-b5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	5966473	2L_5966473_SNP [dm3] 2L_5966473_SNP [dm6]	C	T	2.667e^-4	0.732	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9818581	2R_9818581_SNP [dm3] 2R_13931076_SNP [dm6]	T	C	2.667e^-4	0.732	INTRON shot
3L	7409615	3L_7409615_SNP [dm3] 3L_7416515_SNP [dm6]	G	A	2.669e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	4808212	3L_4808212_SNP [dm3] 3L_4808212_SNP [dm6]	T	C	2.670e^-4	0.732	SYNONYMOUS_CODING Dhc64C UPSTREAM CG18808	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	27495566	3R_27495566_SNP [dm3] 3R_31669844_SNP [dm6]	C	G	2.670e^-4	0.732	UTR_5_PRIME CG1815	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	20862947	2L_20862947_SNP [dm3] 2L_20862947_SNP [dm6]	A	C	2.670e^-4	0.732	INTRON CR9337
3L	13470265	3L_13470265_SNP [dm3] 3L_13477165_SNP [dm6]	T	C	2.671e^-4	0.732	UPSTREAM stv INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3813495	2L_3813495_SNP [dm3] 2L_3813495_SNP [dm6]	A	G	2.673e^-4	0.732	UPSTREAM CG3407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
X	17218222	X_17218222_SNP [dm3] X_17324189_SNP [dm6]	T	C	2.676e^-4	0.732	DOWNSTREAM B-H2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	24567993	3R_24567993_SNP [dm3] 3R_28742271_SNP [dm6]	C	A	2.677e^-4	0.732	INTRON AstA-R2
3L	2036760	3L_2036760_SNP [dm3] 3L_2036760_SNP [dm6]	C	G	2.680e^-4	0.732	DOWNSTREAM CG42355 INTERGENIC
X	6838012	X_6838012_DEL [dm3] X_6943979_DEL [dm6]	AGAAGCGG	T	2.690e^-4	0.732	INTRON CG14431
X	17625232	X_17625232_SNP [dm3] X_17731199_SNP [dm6]	A	C	2.691e^-4	0.732	INTRON CG42684
3L	9392488	3L_9392488_SNP [dm3] 3L_9399388_SNP [dm6]	C	T	2.697e^-4	0.732	UPSTREAM CG4080 DOWNSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	5383366	3L_5383366_SNP [dm3] 3L_5390266_SNP [dm6]	C	T	2.707e^-4	0.732	INTERGENIC
3L	5383387	3L_5383387_SNP [dm3] 3L_5390287_SNP [dm6]	T	G	2.707e^-4	0.732	INTERGENIC
3L	5383388	3L_5383388_DEL [dm3] 3L_5390288_DEL [dm6]	GCATACTAT	G	2.707e^-4	0.732	INTERGENIC
3R	25272425	3R_25272425_SNP [dm3] 3R_29446703_SNP [dm6]	G	A	2.711e^-4	0.732	INTRON Ptp99A
3L	9392926	3L_9392926_SNP [dm3] 3L_9399826_SNP [dm6]	A	T	2.718e^-4	0.732	UTR_3_PRIME eIF-4E UPSTREAM CG4080	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9393184	3L_9393184_SNP [dm3] 3L_9400084_SNP [dm6]	C	T	2.718e^-4	0.732	UPSTREAM CG4080 INTRON eIF-4E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22106148	3L_22106148_SNP [dm3] 3L_22113048_SNP [dm6]	G	A	2.722e^-4	0.732	INTERGENIC
2R	13966318	2R_13966318_SNP [dm3] 2R_18078813_SNP [dm6]	C	A	2.727e^-4	0.732	INTRON CG34386
3L	7736410	3L_7736410_SNP [dm3] 3L_7743310_SNP [dm6]	C	G	2.731e^-4	0.732	UPSTREAM Snmp2 INTRON CG32373
3R	26433500	3R_26433500_SNP [dm3] 3R_30607778_SNP [dm6]	C	T	2.733e^-4	0.732	INTRON CG31016
3R	3241549	3R_3241549_SNP [dm3] 3R_7415827_SNP [dm6]	C	G	2.740e^-4	0.732	INTERGENIC
2L	623022	2L_623022_SNP [dm3] 2L_623022_SNP [dm6]	C	T	2.740e^-4	0.732	UPSTREAM CR44797 DOWNSTREAM CR44798 INTERGENIC
2L	22335788	2L_22335788_SNP [dm3] 2L_22335788_SNP [dm6]	T	G	2.754e^-4	0.732	INTRON CG17018	transposable element FlyBase
2L	22341086	2L_22341086_SNP [dm3] 2L_22341086_SNP [dm6]	A	C	2.754e^-4	0.732	INTRON CG17018 EXON CR43359
3R	24103242	3R_24103242_INS [dm3] 3R_28277520_INS [dm6]	A	AA	2.759e^-4	0.732	INTERGENIC
2L	9796041	2L_9796041_SNP [dm3] 2L_9796041_SNP [dm6]	C	A	2.773e^-4	0.732	UTR_3_PRIME nAChRalpha6 DOWNSTREAM nAChRalpha6
3L	3859054	3L_3859054_SNP [dm3] 3L_3859054_SNP [dm6]	C	A	2.774e^-4	0.732	INTRON Awh	TF binding site mE1_TFBS_cad
3L	2037262	3L_2037262_SNP [dm3] 3L_2037262_SNP [dm6]	T	G	2.777e^-4	0.732	DOWNSTREAM CG42355 INTERGENIC
3L	2037263	3L_2037263_SNP [dm3] 3L_2037263_SNP [dm6]	G	T	2.777e^-4	0.732	DOWNSTREAM CG42355 INTERGENIC
X	20807674	X_20807674_DEL [dm3] X_20936647_DEL [dm6]	TTAAGT	T	2.782e^-4	0.732	INTRON Npc1b
2R	16367200	2R_16367200_SNP [dm3] 2R_20479695_SNP [dm6]	C	T	2.784e^-4	0.732	DOWNSTREAM CG12484 INTERGENIC
2R	10013673	2R_10013673_SNP [dm3] 2R_14126168_SNP [dm6]	C	T	2.792e^-4	0.732	INTRON Prosap
2R	3176108	2R_3176108_SNP [dm3] 2R_7288603_SNP [dm6]	A	G	2.797e^-4	0.732	INTRON pwn
X	6509735	X_6509735_SNP [dm3] X_6615702_SNP [dm6]	T	C	2.798e^-4	0.732	INTRON pigs
X	19872699	X_19872699_SNP [dm3] X_19978666_SNP [dm6]	A	G	2.800e^-4	0.732	INTERGENIC
2L	9385603	2L_9385603_SNP [dm3] 2L_9385603_SNP [dm6]	A	T	2.801e^-4	0.732	INTRON Shawl
2L	10795325	2L_10795325_SNP [dm3] 2L_10795325_SNP [dm6]	G	T	2.803e^-4	0.732	INTRON CG31869	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6739857	2L_6739857_SNP [dm3] 2L_6739857_SNP [dm6]	G	T	2.812e^-4	0.732	NON_SYNONYMOUS_CODING TTLL3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3508473	2R_3508473_SNP [dm3] 2R_7620968_SNP [dm6]	C	G	2.815e^-4	0.732	UPSTREAM CG1358 DOWNSTREAM CR44444 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	7407809	3L_7407809_SNP [dm3] 3L_7414709_SNP [dm6]	A	C	2.822e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	3563642	3R_3563642_SNP [dm3] 3R_7737920_SNP [dm6]	T	A	2.823e^-4	0.732	INTERGENIC
3L	1439397	3L_1439397_SNP [dm3] 3L_1439397_SNP [dm6]	G	A	2.848e^-4	0.732	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da
3L	10506152	3L_10506152_INS [dm3] 3L_10513052_INS [dm6]	T	TT	2.850e^-4	0.732	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
2L	3235687	2L_3235687_SNP [dm3] 2L_3235687_SNP [dm6]	A	G	2.855e^-4	0.732	INTERGENIC
3R	22811622	3R_22811622_SNP [dm3] 3R_26985900_SNP [dm6]	T	G	2.862e^-4	0.732	SYNONYMOUS_CODING CG31075 DOWNSTREAM CG14253	TF binding site mE1_TFBS_cad
3L	18953533	3L_18953533_DEL [dm3] 3L_18960433_DEL [dm6]	AGCT	A	2.863e^-4	0.732	INTERGENIC
3L	15701902	3L_15701902_DEL [dm3] 3L_15708802_DEL [dm6]	CAAACGATAGACTC...	C	2.866e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	4193800	3L_4193800_SNP [dm3] 3L_4193800_SNP [dm6]	C	G	2.867e^-4	0.732	UPSTREAM CG43367 DOWNSTREAM CG18675 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	4193896	3L_4193896_SNP [dm3] 3L_4193896_SNP [dm6]	G	A	2.867e^-4	0.732	UPSTREAM CG43367 DOWNSTREAM CG18675 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	4193939	3L_4193939_SNP [dm3] 3L_4193939_SNP [dm6]	A	C	2.867e^-4	0.732	UPSTREAM CG43367 DOWNSTREAM CG18675 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	3292310	3L_3292310_SNP [dm3] 3L_3292310_SNP [dm6]	A	G	2.875e^-4	0.732	INTRON CG12009
3L	3292335	3L_3292335_SNP [dm3] 3L_3292335_SNP [dm6]	T	A	2.875e^-4	0.732	INTRON CG12009
3R	26091726	3R_26091726_SNP [dm3] 3R_30266004_SNP [dm6]	T	G	2.876e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6790458	3L_6790458_SNP [dm3] 3L_6797358_SNP [dm6]	C	T	2.883e^-4	0.732	INTERGENIC
2R	4173747	2R_4173747_SNP [dm3] 2R_8286242_SNP [dm6]	A	T	2.884e^-4	0.732	INTERGENIC
3R	24233382	3R_24233382_SNP [dm3] 3R_28407660_SNP [dm6]	C	T	2.884e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_cad
X	3252989	X_3252989_SNP [dm3] X_3358956_SNP [dm6]	A	T	2.891e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
X	3252997	X_3252997_SNP [dm3] X_3358964_SNP [dm6]	G	A	2.891e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	7235907	3L_7235907_SNP [dm3] 3L_7242807_SNP [dm6]	G	A	2.891e^-4	0.732	SYNONYMOUS_CODING Neos DOWNSTREAM mRpL50	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11233144	3L_11233144_SNP [dm3] 3L_11240044_SNP [dm6]	C	T	2.893e^-4	0.732	INTERGENIC
2R	8702203	2R_8702203_SNP [dm3] 2R_12814698_SNP [dm6]	C	T	2.898e^-4	0.732	INTERGENIC
2L	1250224	2L_1250224_SNP [dm3] 2L_1250224_SNP [dm6]	C	T	2.899e^-4	0.732	INTERGENIC
3R	24455279	3R_24455279_SNP [dm3] 3R_28629557_SNP [dm6]	G	T	2.899e^-4	0.732	INTRON CG10011
2L	4785199	2L_4785199_SNP [dm3] 2L_4785199_SNP [dm6]	G	T	2.904e^-4	0.732	INTRON CG15630
3R	26987313	3R_26987313_SNP [dm3] 3R_31161591_SNP [dm6]	G	T	2.914e^-4	0.732	INTRON Gycbeta100B & 1 other
2R	1231079	2R_1231079_SNP [dm3] 2R_5343574_SNP [dm6]	T	C	2.925e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA transposable element FlyBase
2R	19359265	2R_19359265_SNP [dm3] 2R_23471742_SNP [dm6]	C	A	2.927e^-4	0.732	START_GAINED Or59b UTR_5_PRIME Or59b DOWNSTREAM Or59c INTRON CG43795
2L	18292424	2L_18292424_DEL [dm3] 2L_18292424_DEL [dm6]	TCAAAGAT	T	2.927e^-4	0.732	UPSTREAM CG43362 & 1 other DOWNSTREAM CR44693 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12055430	2R_12055430_SNP [dm3] 2R_16167925_SNP [dm6]	T	C	2.929e^-4	0.732	SYNONYMOUS_CODING lbk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12591685	3L_12591685_SNP [dm3] 3L_12598585_SNP [dm6]	A	T	2.932e^-4	0.732	INTERGENIC
2R	5987797	2R_5987797_SNP [dm3] 2R_10100292_SNP [dm6]	G	A	2.933e^-4	0.732	UPSTREAM RpLP0-like & 1 other INTRON 14-3-3zeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	5987799	2R_5987799_SNP [dm3] 2R_10100294_SNP [dm6]	A	T	2.933e^-4	0.732	UPSTREAM RpLP0-like & 1 other INTRON 14-3-3zeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	468203	2R_468203_SNP [dm3] 2R_4580698_SNP [dm6]	C	T	2.940e^-4	0.732	INTERGENIC
2L	6968071	2L_6968071_SNP [dm3] 2L_6968071_SNP [dm6]	G	C	2.941e^-4	0.732	UPSTREAM smt3 DOWNSTREAM snRNP-U1-70K INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	24501213	3R_24501213_SNP [dm3] 3R_28675491_SNP [dm6]	A	C	2.947e^-4	0.732	UTR_5_PRIME CG9990
3R	9555359	3R_9555359_SNP [dm3] 3R_13729637_SNP [dm6]	C	G	2.947e^-4	0.732	INTRON CG34383	TF binding site mE1_TFBS_inv
3L	16246298	3L_16246298_SNP [dm3] 3L_16253198_SNP [dm6]	C	A	2.950e^-4	0.732	UPSTREAM CG13055 INTERGENIC
3L	20996602	3L_20996602_SNP [dm3] 3L_21003502_SNP [dm6]	G	T	2.958e^-4	0.732	INTRON skd
2L	12889969	2L_12889969_SNP [dm3] 2L_12889969_SNP [dm6]	A	C	2.969e^-4	0.732	INTERGENIC
3R	3575581	3R_3575581_SNP [dm3] 3R_7749859_SNP [dm6]	T	G	2.971e^-4	0.732	INTRON pyd3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	19800911	2L_19800911_SNP [dm3] 2L_19800911_SNP [dm6]	G	A	2.972e^-4	0.732	INTRON sick	TF binding site mE1_TFBS_cad
2R	9486693	2R_9486693_INS [dm3] 2R_13599188_INS [dm6]	G	TC	2.973e^-4	0.732	DOWNSTREAM S-Lap5 INTERGENIC
3L	12673088	3L_12673088_SNP [dm3] 3L_12679988_SNP [dm6]	A	T	2.974e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_cad
2L	10116205	2L_10116205_SNP [dm3] 2L_10116205_SNP [dm6]	C	A	2.975e^-4	0.732	INTRON CG44153 & 1 other
2L	10795213	2L_10795213_DEL [dm3] 2L_10795213_DEL [dm6]	CATA	AG	2.980e^-4	0.732	INTRON CG31869	TF binding site mE1_TFBS_inv
2R	8702224	2R_8702224_SNP [dm3] 2R_12814719_SNP [dm6]	G	A	2.984e^-4	0.732	INTERGENIC
3R	25997760	3R_25997760_DEL [dm3] 3R_30172038_DEL [dm6]	CGCATT	C	2.986e^-4	0.732	UTR_3_PRIME Mlc2 UPSTREAM CG31028	TF binding site mE1_TFBS_HSA
3L	13664203	3L_13664203_SNP [dm3] 3L_13671103_SNP [dm6]	G	T	2.987e^-4	0.732	INTRON bru-3
2L	8591399	2L_8591399_SNP [dm3] 2L_8591399_SNP [dm6]	T	G	2.988e^-4	0.732	UPSTREAM CR43855 INTRON Sema-1a & 1 other
3L	8574057	3L_8574057_SNP [dm3] 3L_8580957_SNP [dm6]	C	T	3.007e^-4	0.732	INTRON CG43078
X	3765453	X_3765453_SNP [dm3] X_3871420_SNP [dm6]	T	C	3.008e^-4	0.732	UPSTREAM CG2930 INTRON yin & 1 other	TF binding site mE1_TFBS_cnc
3R	27150484	3R_27150484_SNP [dm3] 3R_31324762_SNP [dm6]	G	A	3.010e^-4	0.732	INTRON CG34347
3L	1913250	3L_1913250_SNP [dm3] 3L_1913250_SNP [dm6]	A	T	3.026e^-4	0.732	INTERGENIC
X	8055306	X_8055306_SNP [dm3] X_8161273_SNP [dm6]	C	A	3.030e^-4	0.732	SYNONYMOUS_CODING CG15337 DOWNSTREAM CG10761	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8879033	3L_8879033_SNP [dm3] 3L_8885933_SNP [dm6]	T	C	3.040e^-4	0.732	INTRON dally
2L	7244787	2L_7244787_SNP [dm3] 2L_7244787_SNP [dm6]	A	G	3.043e^-4	0.732	INTRON Ndae1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	17166758	3L_17166758_DEL [dm3] 3L_17173658_DEL [dm6]	ACCA	A	3.043e^-4	0.732	INTRON Rbp6
3L	17166774	3L_17166774_SNP [dm3] 3L_17173674_SNP [dm6]	T	A	3.043e^-4	0.732	INTRON Rbp6
2R	15412561	2R_15412561_SNP [dm3] 2R_19525056_SNP [dm6]	G	C	3.045e^-4	0.732	UTR_3_PRIME sm
2L	8749299	2L_8749299_SNP [dm3] 2L_8749299_SNP [dm6]	G	A	3.046e^-4	0.732	INTERGENIC
X	22411825	X_22411825_INS [dm3] X_23009989_INS [dm6]	A	ATGTAATAAGTAATAAGGTT...	3.059e^-4	0.732	UPSTREAM CR45010 DOWNSTREAM CR45009	TF binding site BDTNP1_TFBS_dl
3L	2134995	3L_2134995_SNP [dm3] 3L_2134995_SNP [dm6]	T	C	3.071e^-4	0.732	SYNONYMOUS_CODING zormin	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17455471	X_17455471_INS [dm3] X_17561438_INS [dm6]	A	ATTTTTAT	3.073e^-4	0.732	UPSTREAM CG43658 INTERGENIC	TF binding site mE1_TFBS_Trl
X	17455473	X_17455473_DEL [dm3] X_17561440_DEL [dm6]	ACAT	A	3.073e^-4	0.732	UPSTREAM CG43658 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	24233166	3R_24233166_SNP [dm3] 3R_28407444_SNP [dm6]	C	A	3.076e^-4	0.732	INTERGENIC
2L	3410472	2L_3410472_SNP [dm3] 2L_3410472_SNP [dm6]	A	G	3.078e^-4	0.732	UPSTREAM CG8840 INTRON pgant2
2R	10013685	2R_10013685_SNP [dm3] 2R_14126180_SNP [dm6]	C	T	3.079e^-4	0.732	INTRON Prosap
2L	4476601	2L_4476601_SNP [dm3] 2L_4476601_SNP [dm6]	G	C	3.081e^-4	0.732	DOWNSTREAM dp INTRON ine
2R	7277045	2R_7277045_SNP [dm3] 2R_11389540_SNP [dm6]	C	G	3.084e^-4	0.732	UPSTREAM CG30022 INTRON sprt
3L	6209808	3L_6209808_SNP [dm3] 3L_6216708_SNP [dm6]	C	A	3.086e^-4	0.732	INTRON LanA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	17006164	2L_17006164_SNP [dm3] 2L_17006164_SNP [dm6]	A	T	3.086e^-4	0.732	INTERGENIC
2R	10422235	2R_10422235_SNP [dm3] 2R_14534730_SNP [dm6]	G	T	3.097e^-4	0.732	INTRON ttv
3L	4681341	3L_4681341_SNP [dm3] 3L_4681341_SNP [dm6]	A	G	3.098e^-4	0.732	UTR_5_PRIME axo INTRON axo
X	3791061	X_3791061_SNP [dm3] X_3897028_SNP [dm6]	C	A	3.100e^-4	0.732	NON_SYNONYMOUS_CODING CG42541
X	3217785	X_3217785_SNP [dm3] X_3323752_SNP [dm6]	G	A	3.101e^-4	0.732	INTRON CR44886 & 1 other
3L	4300867	3L_4300867_SNP [dm3] 3L_4300867_SNP [dm6]	G	A	3.104e^-4	0.732	INTRON dyl
X	21836533	X_21836533_SNP [dm3] X_22434698_SNP [dm6]	T	G	3.105e^-4	0.732	INTERGENIC	transposable element FlyBase
2L	9592110	2L_9592110_SNP [dm3] 2L_9592110_SNP [dm6]	T	C	3.112e^-4	0.732	DOWNSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3L	17166884	3L_17166884_SNP [dm3] 3L_17173784_SNP [dm6]	C	T	3.116e^-4	0.732	INTRON Rbp6
3L	14796362	3L_14796362_SNP [dm3] 3L_14803262_SNP [dm6]	G	T	3.121e^-4	0.732	UTR_5_PRIME gnu
3R	21945921	3R_21945921_SNP [dm3] 3R_26120199_SNP [dm6]	C	A	3.122e^-4	0.732	INTRON CG31324
2L	8486726	2L_8486726_SNP [dm3] 2L_8486726_SNP [dm6]	T	C	3.126e^-4	0.732	SYNONYMOUS_CODING d DOWNSTREAM unsRNA:d-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11302605	3L_11302605_SNP [dm3] 3L_11309505_SNP [dm6]	A	G	3.128e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_gt
3L	2413171	3L_2413171_SNP [dm3] 3L_2413171_SNP [dm6]	G	T	3.130e^-4	0.732	UPSTREAM CG45186 INTRON CG45186
2L	2661166	2L_2661166_SNP [dm3] 2L_2661166_SNP [dm6]	C	T	3.133e^-4	0.732	INTERGENIC
X	4338971	X_4338971_DEL [dm3] X_4444938_DEL [dm6]	AT	A	3.134e^-4	0.732	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
X	16623740	X_16623740_SNP [dm3] X_16729707_SNP [dm6]	T	C	3.135e^-4	0.732	SYNONYMOUS_CODING CG9634	TF binding site mE1_TFBS_HSA
2L	2359689	2L_2359689_SNP [dm3] 2L_2359689_SNP [dm6]	A	G	3.137e^-4	0.732	UTR_3_PRIME Rab5 DOWNSTREAM eys
2L	7430951	2L_7430951_SNP [dm3] 2L_7430951_SNP [dm6]	C	G	3.137e^-4	0.732	DOWNSTREAM CG5261 INTRON CG5958
X	19204634	X_19204634_SNP [dm3] X_19310601_SNP [dm6]	C	A	3.146e^-4	0.732	UTR_3_PRIME out DOWNSTREAM out
2L	6074200	2L_6074200_SNP [dm3] 2L_6074200_SNP [dm6]	G	C	3.150e^-4	0.732	DOWNSTREAM CR43801 & 1 other INTERGENIC
2L	6074203	2L_6074203_SNP [dm3] 2L_6074203_SNP [dm6]	T	C	3.150e^-4	0.732	DOWNSTREAM CR43801 & 1 other INTERGENIC
2L	6074208	2L_6074208_SNP [dm3] 2L_6074208_SNP [dm6]	C	A	3.150e^-4	0.732	DOWNSTREAM CR43801 & 1 other INTERGENIC
2L	3178662	2L_3178662_SNP [dm3] 2L_3178662_SNP [dm6]	C	A	3.150e^-4	0.732	INTRON CG34393
X	11671502	X_11671502_SNP [dm3] X_11777469_SNP [dm6]	A	T	3.160e^-4	0.732	INTRON dy	TF binding site mE1_TFBS_Trl
2R	5671975	2R_5671975_SNP [dm3] 2R_9784470_SNP [dm6]	A	G	3.163e^-4	0.732	INTRON CG1688
3L	14119480	3L_14119480_SNP [dm3] 3L_14126380_SNP [dm6]	A	T	3.179e^-4	0.732	INTRON Sox21b
3L	17173735	3L_17173735_DEL [dm3] 3L_17180635_DEL [dm6]	AAGCTAGAGCAA...	A	3.180e^-4	0.732	INTRON Rbp6
X	8542593	X_8542593_SNP [dm3] X_8648560_SNP [dm6]	T	A	3.184e^-4	0.732	INTRON oc	silencer mE1_HDAC_PRE
2L	8742007	2L_8742007_SNP [dm3] 2L_8742007_SNP [dm6]	C	T	3.187e^-4	0.732	INTERGENIC
X	19055953	X_19055953_DEL [dm3] X_19161920_DEL [dm6]	CC	C	3.191e^-4	0.732	INTRON RhoGAP18B	TF binding site mE1_TFBS_inv
3R	3548865	3R_3548865_SNP [dm3] 3R_7723143_SNP [dm6]	T	C	3.194e^-4	0.732	SYNONYMOUS_CODING CG2616
2L	3415384	2L_3415384_SNP [dm3] 2L_3415384_SNP [dm6]	T	C	3.195e^-4	0.732	INTRON pgant2
3R	24162017	3R_24162017_DEL [dm3] 3R_28336295_DEL [dm6]	TT	T	3.195e^-4	0.732	UTR_5_PRIME larp UPSTREAM larp DOWNSTREAM Gfat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	11420890	3L_11420890_INS [dm3] 3L_11427790_INS [dm6]	G	GC	3.197e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_z
X	8821092	X_8821092_SNP [dm3] X_8927059_SNP [dm6]	G	T	3.206e^-4	0.732	INTRON rdgA
3R	21926232	3R_21926232_SNP [dm3] 3R_26100510_SNP [dm6]	T	C	3.213e^-4	0.732	INTERGENIC	regulatory region REDfly_CRMs
3R	27119052	3R_27119052_SNP [dm3] 3R_31293330_SNP [dm6]	A	T	3.219e^-4	0.732	INTERGENIC
3L	7407806	3L_7407806_SNP [dm3] 3L_7414706_SNP [dm6]	T	C	3.227e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	2346290	2L_2346290_SNP [dm3] 2L_2346290_SNP [dm6]	A	T	3.227e^-4	0.732	INTRON CG9967 & 1 other
2L	20505641	2L_20505641_SNP [dm3] 2L_20505641_SNP [dm6]	A	T	3.234e^-4	0.732	INTERGENIC
3L	17715126	3L_17715126_SNP [dm3] 3L_17722026_SNP [dm6]	T	A	3.237e^-4	0.732	INTRON Ccn
X	10613027	X_10613027_SNP [dm3] X_10718994_SNP [dm6]	A	C	3.239e^-4	0.732	INTRON CG32676
3R	3461043	3R_3461043_SNP [dm3] 3R_7635321_SNP [dm6]	G	A	3.239e^-4	0.732	INTRON CG34127
3R	23867447	3R_23867447_SNP [dm3] 3R_28041725_SNP [dm6]	T	C	3.240e^-4	0.732	INTRON CG34362
X	8296979	X_8296979_SNP [dm3] X_8402946_SNP [dm6]	G	T	3.243e^-4	0.732	UTR_3_PRIME CG10555	TF binding site BDTNP1_TFBS_dl
3R	13721547	3R_13721547_SNP [dm3] 3R_17895825_SNP [dm6]	G	T	3.251e^-4	0.732	INTRON Rim
2L	21604803	2L_21604803_SNP [dm3] 2L_21604803_SNP [dm6]	T	C	3.251e^-4	0.732	INTERGENIC
3R	3391387	3R_3391387_SNP [dm3] 3R_7565665_SNP [dm6]	C	T	3.257e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	11120728	3R_11120728_SNP [dm3] 3R_15295006_SNP [dm6]	T	C	3.266e^-4	0.732	INTRON Tm1
3R	19096730	3R_19096730_SNP [dm3] 3R_23271008_SNP [dm6]	C	T	3.268e^-4	0.732	UPSTREAM orb INTRON orb
3L	10282961	3L_10282961_SNP [dm3] 3L_10289861_SNP [dm6]	A	G	3.273e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24817741	3R_24817741_SNP [dm3] 3R_28992019_SNP [dm6]	C	G	3.278e^-4	0.732	DOWNSTREAM wat INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19507541	3R_19507541_SNP [dm3] 3R_23681819_SNP [dm6]	A	G	3.285e^-4	0.732	SYNONYMOUS_CODING eIF-3p66 UPSTREAM CG16710	TF binding site mE1_TFBS_cad
3R	27495691	3R_27495691_SNP [dm3] 3R_31669969_SNP [dm6]	A	T	3.288e^-4	0.732	INTRON CG1815	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14954471	3R_14954471_SNP [dm3] 3R_19128749_SNP [dm6]	T	C	3.290e^-4	0.732	INTRON CG6040	transposable element FlyBase
2R	3508454	2R_3508454_SNP [dm3] 2R_7620949_SNP [dm6]	C	T	3.291e^-4	0.732	UPSTREAM CG1358 DOWNSTREAM CR44444 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2350408	2L_2350408_SNP [dm3] 2L_2350408_SNP [dm6]	C	A	3.292e^-4	0.732	INTRON CG9967 & 1 other
2L	2357469	2L_2357469_SNP [dm3] 2L_2357469_SNP [dm6]	C	A	3.292e^-4	0.732	UPSTREAM CG9967 INTRON eys
3R	3147144	3R_3147144_SNP [dm3] 3R_7321422_SNP [dm6]	C	G	3.299e^-4	0.732	INTERGENIC
3R	3147150	3R_3147150_SNP [dm3] 3R_7321428_SNP [dm6]	C	T	3.299e^-4	0.732	INTERGENIC
2R	19359537	2R_19359537_SNP [dm3] 2R_23472014_SNP [dm6]	T	A	3.302e^-4	0.732	UPSTREAM Or59b DOWNSTREAM Or59c INTRON CG43795
X	3867726	X_3867726_INS [dm3] X_3973693_INS [dm6]	T	TT	3.305e^-4	0.732	INTERGENIC
2R	7903394	2R_7903394_SNP [dm3] 2R_12015889_SNP [dm6]	G	T	3.307e^-4	0.732	INTRON otk EXON CR44306	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
X	17553736	X_17553736_DEL [dm3] X_17659703_DEL [dm6]	ATTCATCTTA	A	3.320e^-4	0.732	INTRON beta-Spec	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	8574002	3L_8574002_SNP [dm3] 3L_8580902_SNP [dm6]	C	G	3.324e^-4	0.732	INTRON CG43078
2R	12785386	2R_12785386_INS [dm3] 2R_16897881_INS [dm6]	T	TTATGT	3.336e^-4	0.732	UPSTREAM inaC INTERGENIC
X	8542429	X_8542429_SNP [dm3] X_8648396_SNP [dm6]	T	G	3.341e^-4	0.732	INTRON oc	silencer mE1_HDAC_PRE
3R	23592780	3R_23592780_SNP [dm3] 3R_27767058_SNP [dm6]	G	T	3.341e^-4	0.732	DOWNSTREAM CG34353 INTERGENIC
2L	11478147	2L_11478147_SNP [dm3] 2L_11478147_SNP [dm6]	G	C	3.343e^-4	0.732	INTERGENIC
3R	10668636	3R_10668636_SNP [dm3] 3R_14842914_SNP [dm6]	C	T	3.346e^-4	0.732	INTRON btsz
3R	27010593	3R_27010593_SNP [dm3] 3R_31184871_SNP [dm6]	T	C	3.352e^-4	0.732	INTRON mesh
3R	21945686	3R_21945686_SNP [dm3] 3R_26119964_SNP [dm6]	T	A	3.357e^-4	0.732	INTRON CG31324
2L	1177222	2L_1177222_SNP [dm3] 2L_1177222_SNP [dm6]	A	G	3.366e^-4	0.732	UPSTREAM CG4896 INTRON CG4887	TF binding site BDTNP1_TFBS_dl
2R	2967921	2R_2967921_SNP [dm3] 2R_7080416_SNP [dm6]	T	C	3.366e^-4	0.732	INTERGENIC
X	14626412	X_14626412_SNP [dm3] X_14732379_SNP [dm6]	G	A	3.374e^-4	0.732	INTRON NetB
X	6838022	X_6838022_SNP [dm3] X_6943989_SNP [dm6]	A	G	3.375e^-4	0.732	INTRON CG14431
3L	17346798	3L_17346798_SNP [dm3] 3L_17353698_SNP [dm6]	C	A	3.380e^-4	0.732	NON_SYNONYMOUS_CODING CG7692	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	20504776	X_20504776_SNP [dm3] X_20633749_SNP [dm6]	T	C	3.381e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
X	22071107	X_22071107_INS [dm3] X_22669271_INS [dm6]	A	ACTCTATGTTT...	3.384e^-4	0.732	INTRON CR44997
2R	12511128	2R_12511128_SNP [dm3] 2R_16623623_SNP [dm6]	C	A	3.385e^-4	0.732	UTR_3_PRIME CG5065
3L	18052853	3L_18052853_SNP [dm3] 3L_18059753_SNP [dm6]	T	A	3.400e^-4	0.732	UTR_5_PRIME Eip75B UPSTREAM Eip75B
3R	10495536	3R_10495536_SNP [dm3] 3R_14669814_SNP [dm6]	A	T	3.400e^-4	0.732	SYNONYMOUS_CODING Meltrin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17089044	X_17089044_SNP [dm3] X_17195011_SNP [dm6]	G	C	3.404e^-4	0.732	UTR_3_PRIME baz
2L	1870175	2L_1870175_SNP [dm3] 2L_1870175_SNP [dm6]	C	G	3.404e^-4	0.732	SYNONYMOUS_CODING CG7295 INTRON CG31663
2R	12026097	2R_12026097_SNP [dm3] 2R_16138592_SNP [dm6]	T	C	3.408e^-4	0.732	UPSTREAM Got1 DOWNSTREAM spin INTRON Got1	TF binding site BDTNP1_TFBS_dl
2R	12204778	2R_12204778_SNP [dm3] 2R_16317273_SNP [dm6]	G	A	3.409e^-4	0.732	SYNONYMOUS_CODING CG8060 DOWNSTREAM Nox	TF binding site mE1_TFBS_HSA
2L	16920101	2L_16920101_SNP [dm3] 2L_16920101_SNP [dm6]	C	G	3.410e^-4	0.732	INTERGENIC
3L	16093921	3L_16093921_SNP [dm3] 3L_16100821_SNP [dm6]	A	G	3.415e^-4	0.732	DOWNSTREAM ms_3_72Dt INTRON CG5414
2R	7848803	2R_7848803_SNP [dm3] 2R_11961298_SNP [dm6]	G	T	3.420e^-4	0.732	INTRON CG13188
3R	19179686	3R_19179686_SNP [dm3] 3R_23353964_SNP [dm6]	C	G	3.426e^-4	0.732	NON_SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24473409	3R_24473409_SNP [dm3] 3R_28647687_SNP [dm6]	A	C	3.429e^-4	0.732	INTERGENIC
2R	12676079	2R_12676079_SNP [dm3] 2R_16788574_SNP [dm6]	A	G	3.435e^-4	0.732	SYNONYMOUS_CODING CG5522
3R	22823769	3R_22823769_SNP [dm3] 3R_26998047_SNP [dm6]	T	C	3.447e^-4	0.732	INTRON RYa-R
2L	22324083	2L_22324083_SNP [dm3] 2L_22324083_SNP [dm6]	T	A	3.452e^-4	0.732	INTRON CG17018	transposable element FlyBase
3R	27004938	3R_27004938_MNP [dm3] 3R_31179216_MNP [dm6]	GGT	ACC	3.452e^-4	0.732	DOWNSTREAM Gycbeta100B & 1 other INTRON mesh
X	20369135	X_20369135_SNP [dm3] X_20498108_SNP [dm6]	A	G	3.455e^-4	0.732	INTRON RhoGAP19D
3R	24575162	3R_24575162_SNP [dm3] 3R_28749440_SNP [dm6]	A	G	3.459e^-4	0.732	SYNONYMOUS_CODING CG10000	TF binding site mE1_TFBS_chinmo
3R	24575164	3R_24575164_SNP [dm3] 3R_28749442_SNP [dm6]	G	A	3.459e^-4	0.732	NON_SYNONYMOUS_CODING CG10000	TF binding site mE1_TFBS_chinmo
X	10613125	X_10613125_SNP [dm3] X_10719092_SNP [dm6]	T	G	3.460e^-4	0.732	INTRON CG32676
2R	11510937	2R_11510937_SNP [dm3] 2R_15623432_SNP [dm6]	A	C	3.469e^-4	0.732	INTRON CG42524	TF binding site mE1_TFBS_chinmo
3R	22816617	3R_22816617_SNP [dm3] 3R_26990895_SNP [dm6]	C	T	3.469e^-4	0.732	INTERGENIC
2L	4352983	2L_4352983_SNP [dm3] 2L_4352983_SNP [dm6]	G	A	3.474e^-4	0.732	UTR_5_PRIME CG15429	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18563870	3L_18563870_SNP [dm3] 3L_18570770_SNP [dm6]	C	T	3.480e^-4	0.732	INTRON AstC-R1
3L	7407743	3L_7407743_INS [dm3] 3L_7414643_INS [dm6]	A	AA	3.484e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	8159416	3L_8159416_SNP [dm3] 3L_8166316_SNP [dm6]	A	C	3.488e^-4	0.732	UPSTREAM CG13675 INTERGENIC
3L	9581607	3L_9581607_SNP [dm3] 3L_9588507_SNP [dm6]	G	C	3.491e^-4	0.732	INTRON CG42673
3R	10762064	3R_10762064_SNP [dm3] 3R_14936342_SNP [dm6]	A	G	3.495e^-4	0.732	INTERGENIC
3L	13687187	3L_13687187_SNP [dm3] 3L_13694087_SNP [dm6]	T	A	3.500e^-4	0.732	INTRON bru-3
3R	17537948	3R_17537948_SNP [dm3] 3R_21712226_SNP [dm6]	C	G	3.505e^-4	0.732	INTRON CG31176
3L	16439684	3L_16439684_SNP [dm3] 3L_16446584_SNP [dm6]	A	C	3.506e^-4	0.732	INTRON CG33158 & 1 other
3L	22359866	3L_22359866_SNP [dm3] 3L_22366766_SNP [dm6]	T	C	3.508e^-4	0.732	INTRON Ten-m
2L	4314184	2L_4314184_SNP [dm3] 2L_4314184_SNP [dm6]	C	A	3.510e^-4	0.732	INTRON tutl
3R	22926612	3R_22926612_SNP [dm3] 3R_27100890_SNP [dm6]	C	T	3.510e^-4	0.732	UPSTREAM CG17189 INTERGENIC	regulatory region REDfly_CRMs
3R	20356786	3R_20356786_SNP [dm3] 3R_24531064_SNP [dm6]	C	A	3.516e^-4	0.732	NON_SYNONYMOUS_CODING ana1 UPSTREAM CG13623	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22826826	3R_22826826_SNP [dm3] 3R_27001104_SNP [dm6]	C	T	3.517e^-4	0.732	NON_SYNONYMOUS_CODING CG31077 INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2020104	3L_2020104_SNP [dm3] 3L_2020104_SNP [dm6]	T	C	3.518e^-4	0.732	DOWNSTREAM CG42357 INTERGENIC
3R	10679217	3R_10679217_SNP [dm3] 3R_14853495_SNP [dm6]	T	C	3.522e^-4	0.732	UTR_5_PRIME btsz INTRON btsz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	6200739	2L_6200739_SNP [dm3] 2L_6200739_SNP [dm6]	T	A	3.544e^-4	0.732	INTRON CG34380
2R	9120172	2R_9120172_SNP [dm3] 2R_13232667_SNP [dm6]	C	T	3.546e^-4	0.732	INTRON CG4670	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	22335695	2L_22335695_INS [dm3] 2L_22335695_INS [dm6]	A	ATGTA	3.550e^-4	0.732	INTRON CG17018	transposable element FlyBase
2R	9584271	2R_9584271_SNP [dm3] 2R_13696766_SNP [dm6]	G	A	3.551e^-4	0.732	INTRON fas
3L	4193830	3L_4193830_SNP [dm3] 3L_4193830_SNP [dm6]	T	C	3.556e^-4	0.732	UPSTREAM CG43367 DOWNSTREAM CG18675 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	17006199	2L_17006199_SNP [dm3] 2L_17006199_SNP [dm6]	G	T	3.556e^-4	0.732	INTERGENIC
3R	7109651	3R_7109651_SNP [dm3] 3R_11283929_SNP [dm6]	G	A	3.556e^-4	0.732	INTRON CR31386
3L	17703924	3L_17703924_SNP [dm3] 3L_17710824_SNP [dm6]	C	A	3.556e^-4	0.732	INTRON Ccn	TF binding site BDTNP1_TFBS_twi
2R	12026109	2R_12026109_INS [dm3] 2R_16138604_INS [dm6]	T	TT	3.557e^-4	0.732	UPSTREAM Got1 DOWNSTREAM spin INTRON Got1	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl
3L	7407808	3L_7407808_SNP [dm3] 3L_7414708_SNP [dm6]	A	G	3.557e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	15161009	2L_15161009_SNP [dm3] 2L_15161009_SNP [dm6]	G	C	3.558e^-4	0.732	UPSTREAM CR44771 DOWNSTREAM CG4168 EXON CR44770
2L	12110723	2L_12110723_SNP [dm3] 2L_12110723_SNP [dm6]	A	G	3.561e^-4	0.732	UPSTREAM Phae2 DOWNSTREAM Phae1 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	6263318	2R_6263318_SNP [dm3] 2R_10375813_SNP [dm6]	C	A	3.565e^-4	0.732	DOWNSTREAM Ir47b INTRON CG42732
2R	6263338	2R_6263338_SNP [dm3] 2R_10375833_SNP [dm6]	G	A	3.565e^-4	0.732	DOWNSTREAM Ir47b INTRON CG42732
2R	6263591	2R_6263591_SNP [dm3] 2R_10376086_SNP [dm6]	G	C	3.565e^-4	0.732	DOWNSTREAM Ir47b INTRON CG42732
2R	6270946	2R_6270946_SNP [dm3] 2R_10383441_SNP [dm6]	T	A	3.565e^-4	0.732	INTRON CG42732
3R	23633048	3R_23633048_SNP [dm3] 3R_27807326_SNP [dm6]	G	A	3.570e^-4	0.732	INTRON CG34353
2L	11247074	2L_11247074_SNP [dm3] 2L_11247074_SNP [dm6]	C	T	3.573e^-4	0.732	INTRON ab
3L	22115973	3L_22115973_SNP [dm3] 3L_22122873_SNP [dm6]	A	G	3.581e^-4	0.732	DOWNSTREAM CR45236 EXON CR45235
2L	17828951	2L_17828951_SNP [dm3] 2L_17828951_SNP [dm6]	T	C	3.584e^-4	0.732	INTRON CadN2
3L	6919328	3L_6919328_SNP [dm3] 3L_6926228_SNP [dm6]	A	C	3.585e^-4	0.732	INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1247475	2L_1247475_SNP [dm3] 2L_1247475_SNP [dm6]	T	C	3.589e^-4	0.732	INTERGENIC
3L	22378949	3L_22378949_SNP [dm3] 3L_22385849_SNP [dm6]	G	T	3.596e^-4	0.732	INTRON Ten-m	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15204992	3R_15204992_SNP [dm3] 3R_19379270_SNP [dm6]	C	A	3.596e^-4	0.732	INTRON Ino80
3L	8346486	3L_8346486_SNP [dm3] 3L_8353386_SNP [dm6]	C	T	3.599e^-4	0.732	NON_SYNONYMOUS_CODING CG17352 SYNONYMOUS_CODING CG17352 UTR_3_PRIME CG17352 DOWNSTREAM mir-4913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15401191	2R_15401191_SNP [dm3] 2R_19513686_SNP [dm6]	T	G	3.605e^-4	0.732	UPSTREAM Ir56d INTERGENIC
3R	26625717	3R_26625717_SNP [dm3] 3R_30799995_SNP [dm6]	C	T	3.611e^-4	0.732	INTRON wts
2R	6263462	2R_6263462_SNP [dm3] 2R_10375957_SNP [dm6]	C	A	3.621e^-4	0.732	DOWNSTREAM Ir47b INTRON CG42732
3L	10648640	3L_10648640_SNP [dm3] 3L_10655540_SNP [dm6]	T	A	3.622e^-4	0.732	INTRON CG32066
3L	7055633	3L_7055633_SNP [dm3] 3L_7062533_SNP [dm6]	G	A	3.622e^-4	0.732	SYNONYMOUS_CODING CG8641	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8742030	2L_8742030_SNP [dm3] 2L_8742030_SNP [dm6]	A	G	3.624e^-4	0.732	INTERGENIC
3L	12628789	3L_12628789_SNP [dm3] 3L_12635689_SNP [dm6]	G	A	3.640e^-4	0.733	INTRON CR32111
2L	6193982	2L_6193982_DEL [dm3] 2L_6193982_DEL [dm6]	AAACA	A	3.641e^-4	0.733	INTRON CG34380	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16447799	3L_16447799_SNP [dm3] 3L_16454699_SNP [dm6]	C	T	3.642e^-4	0.733	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6110773	2L_6110773_SNP [dm3] 2L_6110773_SNP [dm6]	G	A	3.644e^-4	0.733	INTRON stai
3R	3592311	3R_3592311_SNP [dm3] 3R_7766589_SNP [dm6]	C	A	3.653e^-4	0.733	INTERGENIC
2L	20862619	2L_20862619_SNP [dm3] 2L_20862619_SNP [dm6]	A	T	3.654e^-4	0.733	EXON CR9337
3R	13644855	3R_13644855_SNP [dm3] 3R_17819133_SNP [dm6]	G	C	3.657e^-4	0.733	INTRON tinc
2L	13975515	2L_13975515_SNP [dm3] 2L_13975515_SNP [dm6]	A	G	3.685e^-4	0.736	NON_SYNONYMOUS_CODING NimC1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22335582	2L_22335582_SNP [dm3] 2L_22335582_SNP [dm6]	T	C	3.686e^-4	0.736	INTRON CG17018	transposable element FlyBase
3L	17166824	3L_17166824_SNP [dm3] 3L_17173724_SNP [dm6]	G	T	3.725e^-4	0.736	INTRON Rbp6
3R	24130406	3R_24130406_DEL [dm3] 3R_28304684_DEL [dm6]	CACCATTAAAATAATATATT...	C	3.731e^-4	0.736	UPSTREAM CG12516 INTERGENIC
2L	22322569	2L_22322569_SNP [dm3] 2L_22322569_SNP [dm6]	C	T	3.738e^-4	0.736	INTRON CG17018
2L	1021312	2L_1021312_SNP [dm3] 2L_1021312_SNP [dm6]	C	T	3.740e^-4	0.736	INTRON IA-2
3L	17703863	3L_17703863_SNP [dm3] 3L_17710763_SNP [dm6]	G	T	3.741e^-4	0.736	INTRON Ccn	TF binding site BDTNP1_TFBS_twi
3R	25154156	3R_25154156_SNP [dm3] 3R_29328434_SNP [dm6]	C	T	3.772e^-4	0.736	INTERGENIC
3R	25588511	3R_25588511_SNP [dm3] 3R_29762789_SNP [dm6]	G	T	3.774e^-4	0.736	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19172170	3R_19172170_SNP [dm3] 3R_23346448_SNP [dm6]	C	T	3.774e^-4	0.736	UPSTREAM pnt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	21925955	3R_21925955_SNP [dm3] 3R_26100233_SNP [dm6]	A	C	3.787e^-4	0.736	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	21945111	3R_21945111_SNP [dm3] 3R_26119389_SNP [dm6]	G	A	3.787e^-4	0.736	INTRON CG31324
3R	14437750	3R_14437750_SNP [dm3] 3R_18612028_SNP [dm6]	T	A	3.787e^-4	0.736	INTRON qin & 1 other
3R	20684914	3R_20684914_SNP [dm3] 3R_24859192_SNP [dm6]	A	T	3.793e^-4	0.736	DOWNSTREAM ppk22 & 1 other INTRON ppk22
3R	20684936	3R_20684936_SNP [dm3] 3R_24859214_SNP [dm6]	A	T	3.793e^-4	0.736	UTR_3_PRIME ppk22 DOWNSTREAM CG13639 INTRON ppk22
3L	7407717	3L_7407717_INS [dm3] 3L_7414617_INS [dm6]	C	CGTAGTGTCTGTTTAATT...	3.796e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	7407719	3L_7407719_SNP [dm3] 3L_7414619_SNP [dm6]	C	G	3.796e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	7407732	3L_7407732_SNP [dm3] 3L_7414632_SNP [dm6]	A	G	3.796e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	19651352	2R_19651352_SNP [dm3] 2R_23763829_SNP [dm6]	G	A	3.797e^-4	0.736	INTRON CG9850
2L	14299229	2L_14299229_INS [dm3] 2L_14299229_INS [dm6]	T	TT	3.800e^-4	0.736	INTRON wb
2L	5628329	2L_5628329_SNP [dm3] 2L_5628329_SNP [dm6]	C	T	3.807e^-4	0.736	INTRON CG31646	TF binding site BDTNP1_TFBS_twi
2L	11478140	2L_11478140_SNP [dm3] 2L_11478140_SNP [dm6]	T	C	3.812e^-4	0.736	INTERGENIC
3R	3487500	3R_3487500_SNP [dm3] 3R_7661778_SNP [dm6]	C	A	3.816e^-4	0.736	INTRON Nlg1
2L	2818512	2L_2818512_SNP [dm3] 2L_2818512_SNP [dm6]	C	T	3.817e^-4	0.736	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21298246	3R_21298246_SNP [dm3] 3R_25472524_SNP [dm6]	G	A	3.818e^-4	0.736	UTR_5_PRIME Fur1 UPSTREAM Vps33B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2R	3602520	2R_3602520_SNP [dm3] 2R_7715015_SNP [dm6]	G	A	3.820e^-4	0.736	SYNONYMOUS_CODING CG1946 DOWNSTREAM CG1942
2R	1102316	2R_1102316_SNP [dm3] 2R_5214811_SNP [dm6]	G	A	3.823e^-4	0.736	INTRON Nipped-A
2L	5471007	2L_5471007_SNP [dm3] 2L_5471007_SNP [dm6]	C	T	3.828e^-4	0.736	INTERGENIC
2L	2256625	2L_2256625_SNP [dm3] 2L_2256625_SNP [dm6]	G	C	3.834e^-4	0.736	INTERGENIC
2L	3104138	2L_3104138_SNP [dm3] 2L_3104138_SNP [dm6]	G	T	3.836e^-4	0.736	INTRON toc
3L	1996247	3L_1996247_SNP [dm3] 3L_1996247_SNP [dm6]	A	G	3.854e^-4	0.736	INTERGENIC
X	15999047	X_15999047_SNP [dm3] X_16105014_SNP [dm6]	T	G	3.858e^-4	0.736	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
3L	6109339	3L_6109339_SNP [dm3] 3L_6116239_SNP [dm6]	A	G	3.866e^-4	0.736	INTRON Ets65A	TF binding site mE1_TFBS_Kr
3R	7108755	3R_7108755_SNP [dm3] 3R_11283033_SNP [dm6]	C	G	3.874e^-4	0.736	INTRON CR31386
3R	7108887	3R_7108887_SNP [dm3] 3R_11283165_SNP [dm6]	A	G	3.874e^-4	0.736	INTRON CR31386
3R	7109629	3R_7109629_SNP [dm3] 3R_11283907_SNP [dm6]	C	A	3.874e^-4	0.736	INTRON CR31386
3R	12082805	3R_12082805_SNP [dm3] 3R_16257083_SNP [dm6]	C	T	3.876e^-4	0.736	SYNONYMOUS_CODING tara	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21946195	3R_21946195_SNP [dm3] 3R_26120473_SNP [dm6]	C	T	3.876e^-4	0.736	INTRON CG31324
3R	23082246	3R_23082246_SNP [dm3] 3R_27256524_SNP [dm6]	G	T	3.876e^-4	0.736	DOWNSTREAM woc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	15899147	3R_15899147_SNP [dm3] 3R_20073425_SNP [dm6]	A	T	3.876e^-4	0.736	INTERGENIC
3R	15899209	3R_15899209_SNP [dm3] 3R_20073487_SNP [dm6]	C	T	3.876e^-4	0.736	INTERGENIC
3R	20601182	3R_20601182_SNP [dm3] 3R_24775460_SNP [dm6]	A	T	3.879e^-4	0.736	INTRON CG42331	TF binding site mE1_TFBS_cad
2R	1390853	2R_1390853_SNP [dm3] 2R_5503348_SNP [dm6]	A	T	3.880e^-4	0.736	DOWNSTREAM TpnC4 INTRON CG30438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3L	8699848	3L_8699848_DEL [dm3] 3L_8706748_DEL [dm6]	GAGCTGCTAAGAATG...	G	3.891e^-4	0.736	INTERGENIC
2L	5430204	2L_5430204_SNP [dm3] 2L_5430204_SNP [dm6]	A	C	3.892e^-4	0.736	INTERGENIC	TF binding site mE1_TFBS_sens
2R	7076229	2R_7076229_SNP [dm3] 2R_11188724_SNP [dm6]	G	A	3.895e^-4	0.736	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12607552	2R_12607552_SNP [dm3] 2R_16720047_SNP [dm6]	C	T	3.907e^-4	0.736	INTRON CG30463
3L	14313287	3L_14313287_DEL [dm3] 3L_14320187_DEL [dm6]	CCATGC	C	3.908e^-4	0.736	INTRON fz
2L	17006206	2L_17006206_SNP [dm3] 2L_17006206_SNP [dm6]	A	C	3.915e^-4	0.736	INTERGENIC
3L	9367680	3L_9367680_SNP [dm3] 3L_9374580_SNP [dm6]	C	A	3.919e^-4	0.736	SYNONYMOUS_CODING Hsp22 UTR_3_PRIME Hsp67Bb UPSTREAM CG4461 DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9782599	3L_9782599_SNP [dm3] 3L_9789499_SNP [dm6]	C	T	3.921e^-4	0.736	INTRON Zasp67
3R	26100041	3R_26100041_SNP [dm3] 3R_30274319_SNP [dm6]	G	A	3.925e^-4	0.736	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	879928	2L_879928_SNP [dm3] 2L_879928_SNP [dm6]	A	T	3.926e^-4	0.736	SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad
3L	11050941	3L_11050941_SNP [dm3] 3L_11057841_SNP [dm6]	C	T	3.931e^-4	0.736	SYNONYMOUS_CODING CG7888	TF binding site mE1_TFBS_cad
2L	4041050	2L_4041050_SNP [dm3] 2L_4041050_SNP [dm6]	T	G	3.934e^-4	0.736	INTRON ed
2R	1314313	2R_1314313_SNP [dm3] 2R_5426808_SNP [dm6]	T	A	3.939e^-4	0.736	INTRON laccase2
2L	375595	2L_375595_SNP [dm3] 2L_375595_SNP [dm6]	G	T	3.948e^-4	0.736	INTERGENIC
2R	3445414	2R_3445414_SNP [dm3] 2R_7557909_SNP [dm6]	G	A	3.948e^-4	0.736	SYNONYMOUS_CODING Corin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10149895	2L_10149895_SNP [dm3] 2L_10149895_SNP [dm6]	A	T	3.949e^-4	0.736	INTRON CG44153 & 1 other
2L	3813670	2L_3813670_SNP [dm3] 2L_3813670_SNP [dm6]	C	A	3.954e^-4	0.736	UPSTREAM CG3407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21989879	3R_21989879_SNP [dm3] 3R_26164157_SNP [dm6]	A	C	3.957e^-4	0.736	INTERGENIC
3R	3541413	3R_3541413_SNP [dm3] 3R_7715691_SNP [dm6]	G	A	3.961e^-4	0.736	INTERGENIC
3R	3541674	3R_3541674_SNP [dm3] 3R_7715952_SNP [dm6]	G	T	3.961e^-4	0.736	INTERGENIC
2L	2645904	2L_2645904_SNP [dm3] 2L_2645904_SNP [dm6]	G	A	3.969e^-4	0.736	UPSTREAM CR43852 DOWNSTREAM CG9962 INTERGENIC
2R	6272393	2R_6272393_SNP [dm3] 2R_10384888_SNP [dm6]	T	C	3.973e^-4	0.736	INTRON CG42732
2R	6272394	2R_6272394_SNP [dm3] 2R_10384889_SNP [dm6]	A	T	3.973e^-4	0.736	INTRON CG42732
2R	6272413	2R_6272413_SNP [dm3] 2R_10384908_SNP [dm6]	A	G	3.973e^-4	0.736	INTRON CG42732
2R	11532996	2R_11532996_SNP [dm3] 2R_15645491_SNP [dm6]	T	G	3.977e^-4	0.736	INTRON CG42524	TF binding site BDTNP1_TFBS_hb
3R	21841680	3R_21841680_SNP [dm3] 3R_26015958_SNP [dm6]	G	A	3.977e^-4	0.736	UTR_3_PRIME Kaz-m1 DOWNSTREAM Kaz-m1 & 1 other EXON CR45040	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	11512353	2R_11512353_SNP [dm3] 2R_15624848_SNP [dm6]	A	C	3.978e^-4	0.736	INTRON CG42524
3L	8691952	3L_8691952_SNP [dm3] 3L_8698852_SNP [dm6]	T	C	3.981e^-4	0.736	INTERGENIC
3R	21926213	3R_21926213_DEL [dm3] 3R_26100491_DEL [dm6]	AT	A	3.986e^-4	0.736	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl

By genomic position
Variant impact
Gene name

Microbiota_OTU090 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results