DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.325e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.06741

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	7.252	0.0266

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3526 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	12797216	2L_12797216_SNP [dm3] 2L_12797216_SNP [dm6]	A	T	1.136e^-8	0.017	INTERGENIC
2R	13021002	2R_13021002_SNP [dm3] 2R_17133497_SNP [dm6]	C	T	4.692e^-8	0.017	UTR_5_PRIME Acp54A1 UPSTREAM CG11400
2R	13021999	2R_13021999_SNP [dm3] 2R_17134494_SNP [dm6]	C	T	4.692e^-8	0.017	NON_SYNONYMOUS_CODING CG11400 DOWNSTREAM Acp54A1
2R	13022020	2R_13022020_SNP [dm3] 2R_17134515_SNP [dm6]	C	T	4.692e^-8	0.017	NON_SYNONYMOUS_CODING CG11400 DOWNSTREAM Acp54A1
2R	13022123	2R_13022123_SNP [dm3] 2R_17134618_SNP [dm6]	C	G	4.692e^-8	0.017	SYNONYMOUS_CODING CG11400 UPSTREAM CR44391 DOWNSTREAM Acp54A1
2R	13021746	2R_13021746_SNP [dm3] 2R_17134241_SNP [dm6]	C	G	5.649e^-8	0.018	NON_SYNONYMOUS_CODING CG11400 DOWNSTREAM Acp54A1
2R	13049508	2R_13049508_SNP [dm3] 2R_17162003_SNP [dm6]	C	T	1.526e^-7	0.039	INTERGENIC
3L	5416444	3L_5416444_DEL [dm3] 3L_5423344_DEL [dm6]	CAAG	T	1.865e^-7	0.039	UPSTREAM CG34391 INTERGENIC
2L	20505649	2L_20505649_SNP [dm3] 2L_20505649_SNP [dm6]	C	A	1.999e^-7	0.039	INTERGENIC
3L	16674021	3L_16674021_SNP [dm3] 3L_16680921_SNP [dm6]	A	C	2.228e^-7	0.039	SYNONYMOUS_CODING Lasp UTR_5_PRIME CG43954	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13049077	2R_13049077_SNP [dm3] 2R_17161572_SNP [dm6]	C	A	2.316e^-7	0.039	UPSTREAM CG30457 INTERGENIC
X	22235222	X_22235222_DEL [dm3] X_22833386_DEL [dm6]	AA	A	3.259e^-7	0.047	DOWNSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad transposable element FlyBase
2R	13049096	2R_13049096_SNP [dm3] 2R_17161591_SNP [dm6]	T	A	3.575e^-7	0.047	UPSTREAM CG30457 INTERGENIC
2R	13019968	2R_13019968_SNP [dm3] 2R_17132463_SNP [dm6]	T	C	3.807e^-7	0.047	UPSTREAM CR45273 & 1 other INTERGENIC
2R	13019973	2R_13019973_SNP [dm3] 2R_17132468_SNP [dm6]	A	G	3.807e^-7	0.047	UPSTREAM CR45273 & 1 other INTERGENIC
2L	12797315	2L_12797315_SNP [dm3] 2L_12797315_SNP [dm6]	A	T	4.756e^-7	0.047	INTERGENIC
X	18019403	X_18019403_SNP [dm3] X_18125370_SNP [dm6]	C	A	4.865e^-7	0.047	NON_SYNONYMOUS_CODING CG32553 DOWNSTREAM mir-969
2R	17343694	2R_17343694_SNP [dm3] 2R_21456189_SNP [dm6]	T	C	5.268e^-7	0.047	INTRON Sdc
X	18018859	X_18018859_DEL [dm3] X_18124826_DEL [dm6]	TGT	T	5.300e^-7	0.047	UTR_3_PRIME CG32553 DOWNSTREAM mir-969
2L	12798146	2L_12798146_INS [dm3] 2L_12798146_INS [dm6]	T	TTTT	5.345e^-7	0.047	INTERGENIC
2L	10460566	2L_10460566_SNP [dm3] 2L_10460566_SNP [dm6]	G	T	5.436e^-7	0.047	INTRON LM408
2R	13019907	2R_13019907_SNP [dm3] 2R_17132402_SNP [dm6]	G	T	5.541e^-7	0.047	UPSTREAM CR45273 INTERGENIC
2R	18447017	2R_18447017_SNP [dm3] 2R_22559512_SNP [dm6]	C	T	6.681e^-7	0.054	INTRON px
2R	13020340	2R_13020340_SNP [dm3] 2R_17132835_SNP [dm6]	G	A	7.032e^-7	0.054	UPSTREAM Acp54A1 INTERGENIC
X	18019438	X_18019438_SNP [dm3] X_18125405_SNP [dm6]	T	C	7.302e^-7	0.054	NON_SYNONYMOUS_CODING CG32553 DOWNSTREAM mir-969
3L	16661482	3L_16661482_SNP [dm3] 3L_16668382_SNP [dm6]	T	A	7.786e^-7	0.054	UPSTREAM Galphaf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	12608266	2R_12608266_SNP [dm3] 2R_16720761_SNP [dm6]	C	A	7.796e^-7	0.054	INTRON CG30463	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14764769	2L_14764769_SNP [dm3] 2L_14764769_SNP [dm6]	C	T	8.382e^-7	0.056	DOWNSTREAM CSN1a INTERGENIC
2R	10251028	2R_10251028_SNP [dm3] 2R_14363523_SNP [dm6]	T	C	9.671e^-7	0.061	DOWNSTREAM Arc2 INTRON Tfb1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	5692330	3L_5692330_SNP [dm3] 3L_5699230_SNP [dm6]	C	T	1.032e^-6	0.061	INTRON sif	TF binding site mE1_TFBS_chinmo
2L	12798143	2L_12798143_SNP [dm3] 2L_12798143_SNP [dm6]	T	A	1.085e^-6	0.061	INTERGENIC
2L	14615175	2L_14615175_SNP [dm3] 2L_14615175_SNP [dm6]	G	T	1.151e^-6	0.061	UPSTREAM Adhr & 1 other INTRON osp
X	18018538	X_18018538_SNP [dm3] X_18124505_SNP [dm6]	G	A	1.165e^-6	0.061	DOWNSTREAM CG32553 & 1 other INTERGENIC
X	18018598	X_18018598_SNP [dm3] X_18124565_SNP [dm6]	C	G	1.165e^-6	0.061	DOWNSTREAM CG32553 & 1 other INTERGENIC
X	22237358	X_22237358_SNP [dm3] X_22835522_SNP [dm6]	A	G	1.196e^-6	0.061	INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19090961	2R_19090961_INS [dm3] 2R_23203438_INS [dm6]	G	GA	1.202e^-6	0.061	INTRON CG34371	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	18018808	X_18018808_INS [dm3] X_18124775_INS [dm6]	TG	AAA	1.217e^-6	0.061	UTR_3_PRIME CG32553 DOWNSTREAM mir-969
3L	6164678	3L_6164678_SNP [dm3] 3L_6171578_SNP [dm6]	T	C	1.372e^-6	0.063	NON_SYNONYMOUS_CODING CG10289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	5262905	3L_5262905_SNP [dm3] 3L_5269805_SNP [dm6]	T	A	1.378e^-6	0.063	INTRON shep
X	18018694	X_18018694_SNP [dm3] X_18124661_SNP [dm6]	T	A	1.457e^-6	0.063	UTR_3_PRIME CG32553 DOWNSTREAM mir-969
2R	12420476	2R_12420476_SNP [dm3] 2R_16532971_SNP [dm6]	G	T	1.460e^-6	0.063	UTR_3_PRIME Sema-2a
2L	1070442	2L_1070442_SNP [dm3] 2L_1070442_SNP [dm6]	A	G	1.569e^-6	0.063	INTRON S	TF binding site mE1_TFBS_cad
2R	13005656	2R_13005656_SNP [dm3] 2R_17118151_SNP [dm6]	T	G	1.642e^-6	0.063	DOWNSTREAM Amy-p INTERGENIC
3L	16672662	3L_16672662_SNP [dm3] 3L_16679562_SNP [dm6]	C	T	1.647e^-6	0.063	SYNONYMOUS_CODING Lasp UTR_5_PRIME CG43954 INTRON Lasp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	16666710	3L_16666710_SNP [dm3] 3L_16673610_SNP [dm6]	A	T	1.713e^-6	0.063	UPSTREAM CG13032 & 1 other INTERGENIC	regulatory region REDfly_CRMs
3L	16668713	3L_16668713_SNP [dm3] 3L_16675613_SNP [dm6]	G	T	1.713e^-6	0.063	SYNONYMOUS_CODING CG13032 DOWNSTREAM Lasp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7684139	3R_7684139_SNP [dm3] 3R_11858417_SNP [dm6]	C	A	1.743e^-6	0.063	INTRON CG6959
X	18018299	X_18018299_DEL [dm3] X_18124266_DEL [dm6]	AC	A	1.907e^-6	0.063	UPSTREAM mir-969 DOWNSTREAM CG32553 INTERGENIC
X	18018482	X_18018482_SNP [dm3] X_18124449_SNP [dm6]	C	T	1.907e^-6	0.063	DOWNSTREAM CG32553 & 1 other EXON mir-969
X	18018591	X_18018591_SNP [dm3] X_18124558_SNP [dm6]	A	G	1.907e^-6	0.063	DOWNSTREAM CG32553 & 1 other INTERGENIC
X	18018592	X_18018592_SNP [dm3] X_18124559_SNP [dm6]	A	G	1.907e^-6	0.063	DOWNSTREAM CG32553 & 1 other INTERGENIC
X	18018784	X_18018784_INS [dm3] X_18124751_INS [dm6]	A	AC	1.907e^-6	0.063	UTR_3_PRIME CG32553 DOWNSTREAM mir-969
2L	1070109	2L_1070109_SNP [dm3] 2L_1070109_SNP [dm6]	C	T	1.930e^-6	0.063	INTRON S	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	5344210	3L_5344210_SNP [dm3] 3L_5351110_SNP [dm6]	T	A	1.944e^-6	0.063	INTRON lama
2L	10685807	2L_10685807_SNP [dm3] 2L_10685807_SNP [dm6]	A	G	1.999e^-6	0.063	DOWNSTREAM CG7296 INTERGENIC	TF binding site mE1_TFBS_zfh1
2L	12766906	2L_12766906_INS [dm3] 2L_12766906_INS [dm6]	A	AA	2.030e^-6	0.063	INTERGENIC
3L	6164651	3L_6164651_SNP [dm3] 3L_6171551_SNP [dm6]	C	T	2.047e^-6	0.063	NON_SYNONYMOUS_CODING CG10289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	16666709	3L_16666709_SNP [dm3] 3L_16673609_SNP [dm6]	G	T	2.051e^-6	0.063	UPSTREAM CG13032 & 1 other INTERGENIC	regulatory region REDfly_CRMs
2L	10685765	2L_10685765_SNP [dm3] 2L_10685765_SNP [dm6]	T	A	2.131e^-6	0.063	DOWNSTREAM CG7296 INTERGENIC	TF binding site mE1_TFBS_zfh1
3L	5719080	3L_5719080_SNP [dm3] 3L_5725980_SNP [dm6]	T	A	2.147e^-6	0.063	INTRON sif
3L	4056180	3L_4056180_SNP [dm3] 3L_4056180_SNP [dm6]	T	C	2.174e^-6	0.063	INTRON CG1136
3L	4056192	3L_4056192_SNP [dm3] 3L_4056192_SNP [dm6]	T	A	2.174e^-6	0.063	INTRON CG1136
X	18018680	X_18018680_SNP [dm3] X_18124647_SNP [dm6]	C	T	2.209e^-6	0.063	UTR_3_PRIME CG32553 DOWNSTREAM mir-969
X	18018685	X_18018685_SNP [dm3] X_18124652_SNP [dm6]	G	T	2.209e^-6	0.063	UTR_3_PRIME CG32553 DOWNSTREAM mir-969
X	18018686	X_18018686_SNP [dm3] X_18124653_SNP [dm6]	T	A	2.209e^-6	0.063	UTR_3_PRIME CG32553 DOWNSTREAM mir-969
2L	16999755	2L_16999755_SNP [dm3] 2L_16999755_SNP [dm6]	G	A	2.408e^-6	0.063	DOWNSTREAM CR45357 INTERGENIC
X	12267352	X_12267352_SNP [dm3] X_12373319_SNP [dm6]	T	C	2.436e^-6	0.063	SYNONYMOUS_CODING CG2577
2L	12797478	2L_12797478_SNP [dm3] 2L_12797478_SNP [dm6]	C	T	2.470e^-6	0.063	INTERGENIC
3L	5345133	3L_5345133_SNP [dm3] 3L_5352033_SNP [dm6]	T	C	2.493e^-6	0.063	UPSTREAM lama INTRON lama	TF binding site mE1_TFBS_HSA
3L	16665315	3L_16665315_DEL [dm3] 3L_16672215_DEL [dm6]	CTTGT	C	2.506e^-6	0.063	UTR_3_PRIME zetaCOP INTRON zetaCOP
3L	16665323	3L_16665323_SNP [dm3] 3L_16672223_SNP [dm6]	C	T	2.506e^-6	0.063	UTR_3_PRIME zetaCOP INTRON zetaCOP
3L	16667156	3L_16667156_SNP [dm3] 3L_16674056_SNP [dm6]	A	T	2.556e^-6	0.063	UTR_5_PRIME CG13032 UPSTREAM zetaCOP	regulatory region REDfly_CRMs
3L	16670236	3L_16670236_SNP [dm3] 3L_16677136_SNP [dm6]	G	A	2.556e^-6	0.063	UTR_3_PRIME Lasp DOWNSTREAM CG13032 & 2 others
3L	16674247	3L_16674247_SNP [dm3] 3L_16681147_SNP [dm6]	C	A	2.556e^-6	0.063	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	16674389	3L_16674389_SNP [dm3] 3L_16681289_SNP [dm6]	G	A	2.583e^-6	0.063	SYNONYMOUS_CODING Lasp UTR_5_PRIME CG43954	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18018246	X_18018246_SNP [dm3] X_18124213_SNP [dm6]	T	G	2.627e^-6	0.063	UPSTREAM mir-969 DOWNSTREAM CG32553 INTERGENIC
X	18019227	X_18019227_SNP [dm3] X_18125194_SNP [dm6]	A	T	2.627e^-6	0.063	SYNONYMOUS_CODING CG32553 DOWNSTREAM mir-969
3L	5426345	3L_5426345_SNP [dm3] 3L_5433245_SNP [dm6]	G	A	2.653e^-6	0.063	INTRON CG34391
2R	12967998	2R_12967998_SNP [dm3] 2R_17080493_SNP [dm6]	C	A	2.750e^-6	0.065	INTRON CG30460
2R	13020226	2R_13020226_DEL [dm3] 2R_17132721_DEL [dm6]	TTCGTTGTATT...	T	2.867e^-6	0.067	UPSTREAM Acp54A1 INTERGENIC
3L	5344218	3L_5344218_SNP [dm3] 3L_5351118_SNP [dm6]	G	A	2.957e^-6	0.067	INTRON lama
2L	12766907	2L_12766907_INS [dm3] 2L_12766907_INS [dm6]	T	TT	2.994e^-6	0.067	INTERGENIC
X	18019141	X_18019141_SNP [dm3] X_18125108_SNP [dm6]	G	A	3.007e^-6	0.067	UTR_3_PRIME CG32553 DOWNSTREAM mir-969
3L	5344231	3L_5344231_SNP [dm3] 3L_5351131_SNP [dm6]	T	A	3.012e^-6	0.067	INTRON lama
2R	17343270	2R_17343270_SNP [dm3] 2R_21455765_SNP [dm6]	A	G	3.044e^-6	0.067	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5691965	3L_5691965_SNP [dm3] 3L_5698865_SNP [dm6]	G	A	3.112e^-6	0.067	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo
2R	15539060	2R_15539060_INS [dm3] 2R_19651555_INS [dm6]	A	ATA	3.269e^-6	0.069	UPSTREAM Ir56e DOWNSTREAM CR44212 INTERGENIC
2L	4338426	2L_4338426_SNP [dm3] 2L_4338426_SNP [dm6]	A	C	3.287e^-6	0.069	UPSTREAM Atet INTRON Atet
2L	2735023	2L_2735023_INS [dm3] 2L_2735023_INS [dm6]	G	TA	3.549e^-6	0.074	UPSTREAM CG31689 INTRON CG31689
X	12267361	X_12267361_SNP [dm3] X_12373328_SNP [dm6]	C	T	3.594e^-6	0.074	SYNONYMOUS_CODING CG2577
X	22251662	X_22251662_SNP [dm3] X_22849826_SNP [dm6]	T	C	3.731e^-6	0.076	INTRON fog & 1 other
2R	12967974	2R_12967974_SNP [dm3] 2R_17080469_SNP [dm6]	C	T	3.822e^-6	0.077	INTRON CG30460
X	6624836	X_6624836_DEL [dm3] X_6730803_DEL [dm6]	CATTTTTCCTC...	C	3.840e^-6	0.077	UPSTREAM CG3168 INTRON CG3168
3L	3889047	3L_3889047_SNP [dm3] 3L_3889047_SNP [dm6]	T	C	3.872e^-6	0.077	INTERGENIC
3L	5301451	3L_5301451_SNP [dm3] 3L_5308351_SNP [dm6]	C	A	3.943e^-6	0.077	INTERGENIC
3L	15618088	3L_15618088_SNP [dm3] 3L_15624988_SNP [dm6]	G	A	4.197e^-6	0.081	DOWNSTREAM CG7372 INTRON comm3
2L	11289225	2L_11289225_SNP [dm3] 2L_11289225_SNP [dm6]	C	T	4.400e^-6	0.083	INTERGENIC
X	22251955	X_22251955_SNP [dm3] X_22850119_SNP [dm6]	A	T	4.456e^-6	0.083	INTRON fog & 1 other
3L	18583668	3L_18583668_SNP [dm3] 3L_18590568_SNP [dm6]	T	A	4.469e^-6	0.083	DOWNSTREAM CG7271 INTERGENIC
2L	12766800	2L_12766800_SNP [dm3] 2L_12766800_SNP [dm6]	A	T	4.473e^-6	0.083	INTERGENIC
X	22245576	X_22245576_INS [dm3] X_22843740_INS [dm6]	A	AA	4.661e^-6	0.086	INTRON fog & 1 other
X	18020891	X_18020891_DEL [dm3] X_18126858_DEL [dm6]	TATTGTGGTCCTGGAAAACC...	A	4.994e^-6	0.091	UTR_5_PRIME CG32553
X	18018879	X_18018879_SNP [dm3] X_18124846_SNP [dm6]	T	G	5.047e^-6	0.091	UTR_3_PRIME CG32553 DOWNSTREAM mir-969
3L	5301455	3L_5301455_SNP [dm3] 3L_5308355_SNP [dm6]	G	T	5.270e^-6	0.094	INTERGENIC
3R	18466880	3R_18466880_SNP [dm3] 3R_22641158_SNP [dm6]	C	T	5.638e^-6	0.1	INTRON CG45058
2R	5544452	2R_5544452_SNP [dm3] 2R_9656947_SNP [dm6]	T	A	5.699e^-6	0.1	INTRON Mmp2
2R	13021703	2R_13021703_SNP [dm3] 2R_17134198_SNP [dm6]	C	A	5.749e^-6	0.1	UTR_5_PRIME CG11400 DOWNSTREAM Acp54A1
2R	17097886	2R_17097886_SNP [dm3] 2R_21210381_SNP [dm6]	A	G	5.799e^-6	0.1	NON_SYNONYMOUS_CODING Glycogenin UTR_3_PRIME Glycogenin UPSTREAM CG44245 DOWNSTREAM Glycogenin INTRON CG44245
3L	16673601	3L_16673601_SNP [dm3] 3L_16680501_SNP [dm6]	C	G	5.841e^-6	0.1	INTRON Lasp & 1 other
X	21952338	X_21952338_SNP [dm3] X_22550502_SNP [dm6]	T	C	5.908e^-6	0.1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12210089	3R_12210089_SNP [dm3] 3R_16384367_SNP [dm6]	C	T	6.159e^-6	0.103	INTRON ss	regulatory region REDfly_CRMs
2R	13021777	2R_13021777_SNP [dm3] 2R_17134272_SNP [dm6]	C	T	6.205e^-6	0.103	NON_SYNONYMOUS_CODING CG11400 DOWNSTREAM Acp54A1
X	22236845	X_22236845_SNP [dm3] X_22835009_SNP [dm6]	A	G	6.358e^-6	0.105	INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	6164639	3L_6164639_SNP [dm3] 3L_6171539_SNP [dm6]	T	C	6.533e^-6	0.106	NON_SYNONYMOUS_CODING CG10289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	20589471	X_20589471_SNP [dm3] X_20718444_SNP [dm6]	G	C	6.573e^-6	0.106	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3L	18824159	3L_18824159_SNP [dm3] 3L_18831059_SNP [dm6]	A	G	6.639e^-6	0.106	INTRON Indy	TF binding site mE1_TFBS_cad
2L	2695689	2L_2695689_SNP [dm3] 2L_2695689_SNP [dm6]	T	C	6.875e^-6	0.107	NON_SYNONYMOUS_CODING CG15398 INTRON CG31690	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10251106	2R_10251106_SNP [dm3] 2R_14363601_SNP [dm6]	G	A	6.981e^-6	0.107	SYNONYMOUS_CODING Tfb1 DOWNSTREAM Arc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	12798385	2L_12798385_SNP [dm3] 2L_12798385_SNP [dm6]	T	C	7.036e^-6	0.107	INTERGENIC
3L	8652332	3L_8652332_SNP [dm3] 3L_8659232_SNP [dm6]	T	C	7.041e^-6	0.107	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5344200	3L_5344200_MNP [dm3] 3L_5351100_MNP [dm6]	TGCA	ATTT	7.225e^-6	0.107	INTRON lama
3L	5344219	3L_5344219_SNP [dm3] 3L_5351119_SNP [dm6]	T	A	7.225e^-6	0.107	INTRON lama
3L	5344230	3L_5344230_SNP [dm3] 3L_5351130_SNP [dm6]	C	T	7.225e^-6	0.107	INTRON lama
2R	13021332	2R_13021332_SNP [dm3] 2R_17133827_SNP [dm6]	A	G	7.322e^-6	0.107	UPSTREAM CG11400 DOWNSTREAM Acp54A1 INTERGENIC
2R	13021387	2R_13021387_SNP [dm3] 2R_17133882_SNP [dm6]	C	T	7.322e^-6	0.107	UPSTREAM CG11400 DOWNSTREAM Acp54A1 INTERGENIC
2R	13021907	2R_13021907_SNP [dm3] 2R_17134402_SNP [dm6]	G	A	7.322e^-6	0.107	SYNONYMOUS_CODING CG11400 DOWNSTREAM Acp54A1
2R	13022060	2R_13022060_SNP [dm3] 2R_17134555_SNP [dm6]	A	T	7.322e^-6	0.107	NON_SYNONYMOUS_CODING CG11400 DOWNSTREAM Acp54A1
2L	18510828	2L_18510828_SNP [dm3] 2L_18510828_SNP [dm6]	A	G	7.560e^-6	0.109	INTRON CG10178
2L	9020992	2L_9020992_SNP [dm3] 2L_9020992_SNP [dm6]	C	T	7.584e^-6	0.109	INTERGENIC
3L	3637407	3L_3637407_SNP [dm3] 3L_3637407_SNP [dm6]	C	T	7.923e^-6	0.113	INTRON dar1
X	18018235	X_18018235_SNP [dm3] X_18124202_SNP [dm6]	G	A	7.956e^-6	0.113	UPSTREAM mir-969 DOWNSTREAM CG32553 INTERGENIC
2R	13021008	2R_13021008_SNP [dm3] 2R_17133503_SNP [dm6]	T	A	8.477e^-6	0.119	UTR_5_PRIME Acp54A1 UPSTREAM CG11400
3L	15870162	3L_15870162_SNP [dm3] 3L_15877062_SNP [dm6]	T	G	8.505e^-6	0.119	UPSTREAM CR44051 INTRON pHCl
X	6728895	X_6728895_SNP [dm3] X_6834862_SNP [dm6]	T	C	8.536e^-6	0.119	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17914306	2R_17914306_SNP [dm3] 2R_22026801_SNP [dm6]	A	T	8.611e^-6	0.119	INTRON CG34370
3L	2152189	3L_2152189_SNP [dm3] 3L_2152189_SNP [dm6]	T	C	8.692e^-6	0.119	UPSTREAM zormin INTERGENIC	TF binding site mE1_TFBS_Trl
2R	10250859	2R_10250859_SNP [dm3] 2R_14363354_SNP [dm6]	A	G	8.944e^-6	0.12	UTR_5_PRIME Tfb1 DOWNSTREAM Arc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2490409	3L_2490409_SNP [dm3] 3L_2490409_SNP [dm6]	C	T	8.968e^-6	0.12	UTR_5_PRIME CG1146 UPSTREAM CG1146 INTRON CG45186 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16673296	3L_16673296_DEL [dm3] 3L_16680196_DEL [dm6]	AA	A	8.985e^-6	0.12	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_dl
2R	19181656	2R_19181656_SNP [dm3] 2R_23294133_SNP [dm6]	C	G	9.121e^-6	0.121	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	13019811	2R_13019811_SNP [dm3] 2R_17132306_SNP [dm6]	A	G	9.138e^-6	0.121	UPSTREAM CR45273 INTERGENIC
2R	6595021	2R_6595021_SNP [dm3] 2R_10707516_SNP [dm6]	C	T	9.511e^-6	0.125	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad
3L	5344205	3L_5344205_SNP [dm3] 3L_5351105_SNP [dm6]	T	G	9.641e^-6	0.125	INTRON lama
2L	1922157	2L_1922157_SNP [dm3] 2L_1922157_SNP [dm6]	A	C	9.667e^-6	0.125	INTRON CG7337	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8000981	2L_8000981_SNP [dm3] 2L_8000981_SNP [dm6]	T	A	9.733e^-6	0.125	INTRON Wwox
X	22247732	X_22247732_DEL [dm3] X_22845896_DEL [dm6]	CC	C	9.817e^-6	0.125	INTRON fog & 1 other
2L	17156714	2L_17156714_SNP [dm3] 2L_17156714_SNP [dm6]	C	G	1.012e^-5	0.128	INTRON beat-IIIa & 1 other
2L	12766801	2L_12766801_SNP [dm3] 2L_12766801_SNP [dm6]	A	C	1.025e^-5	0.128	INTERGENIC
2L	11288248	2L_11288248_SNP [dm3] 2L_11288248_SNP [dm6]	T	C	1.032e^-5	0.128	INTERGENIC
2L	11288249	2L_11288249_SNP [dm3] 2L_11288249_SNP [dm6]	T	A	1.032e^-5	0.128	INTERGENIC
2R	14860259	2R_14860259_SNP [dm3] 2R_18972754_SNP [dm6]	T	A	1.054e^-5	0.13	UTR_5_PRIME Topors UPSTREAM Topors & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4076681	3L_4076681_SNP [dm3] 3L_4076681_SNP [dm6]	G	A	1.075e^-5	0.131	INTRON Gad1
3L	16916605	3L_16916605_SNP [dm3] 3L_16923505_SNP [dm6]	C	A	1.079e^-5	0.131	NON_SYNONYMOUS_CODING CG13028 DOWNSTREAM CG13023	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8001107	2L_8001107_SNP [dm3] 2L_8001107_SNP [dm6]	C	T	1.095e^-5	0.131	INTRON Wwox
2R	17381922	2R_17381922_SNP [dm3] 2R_21494417_SNP [dm6]	T	A	1.095e^-5	0.131	INTRON Fkbp14
2L	3211939	2L_3211939_SNP [dm3] 2L_3211939_SNP [dm6]	C	A	1.098e^-5	0.131	DOWNSTREAM CR45336 INTERGENIC
3L	16666725	3L_16666725_SNP [dm3] 3L_16673625_SNP [dm6]	T	G	1.120e^-5	0.131	UPSTREAM CG13032 & 1 other INTERGENIC	regulatory region REDfly_CRMs
2R	13581658	2R_13581658_SNP [dm3] 2R_17694153_SNP [dm6]	T	G	1.122e^-5	0.131	INTRON swi2
3L	16665324	3L_16665324_SNP [dm3] 3L_16672224_SNP [dm6]	T	C	1.132e^-5	0.131	UTR_3_PRIME zetaCOP INTRON zetaCOP
2L	4194499	2L_4194499_SNP [dm3] 2L_4194499_SNP [dm6]	A	T	1.133e^-5	0.131	INTRON CG3714
2R	15209207	2R_15209207_SNP [dm3] 2R_19321702_SNP [dm6]	C	T	1.139e^-5	0.131	INTRON Rgk1	TF binding site mE1_TFBS_inv
X	22250753	X_22250753_SNP [dm3] X_22848917_SNP [dm6]	T	C	1.141e^-5	0.131	INTRON fog & 1 other
3L	16670472	3L_16670472_INS [dm3] 3L_16677372_INS [dm6]	G	GATTAG	1.144e^-5	0.131	UTR_3_PRIME Lasp DOWNSTREAM Lasp & 1 other
2L	5447943	2L_5447943_SNP [dm3] 2L_5447943_SNP [dm6]	T	A	1.188e^-5	0.135	INTERGENIC
2L	16772406	2L_16772406_SNP [dm3] 2L_16772406_SNP [dm6]	A	G	1.201e^-5	0.135	INTRON Mhc
2L	16772410	2L_16772410_SNP [dm3] 2L_16772410_SNP [dm6]	T	A	1.201e^-5	0.135	INTRON Mhc
2L	7623859	2L_7623859_SNP [dm3] 2L_7623859_SNP [dm6]	T	G	1.215e^-5	0.135	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13464023	2L_13464023_SNP [dm3] 2L_13464023_SNP [dm6]	A	T	1.232e^-5	0.136	INTRON CG42784
2R	14860268	2R_14860268_SNP [dm3] 2R_18972763_SNP [dm6]	T	C	1.247e^-5	0.136	UTR_5_PRIME Topors UPSTREAM Topors & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	14860295	2R_14860295_SNP [dm3] 2R_18972790_SNP [dm6]	G	A	1.247e^-5	0.136	UTR_5_PRIME Topors UPSTREAM Topors & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	2240047	2L_2240047_SNP [dm3] 2L_2240047_SNP [dm6]	G	T	1.268e^-5	0.136	SYNONYMOUS_CODING Tengl1 UPSTREAM Tengl2
X	22236903	X_22236903_DEL [dm3] X_22835067_DEL [dm6]	TCAACGATAGT...	T	1.272e^-5	0.136	INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	4443420	2R_4443420_SNP [dm3] 2R_8555915_SNP [dm6]	G	A	1.276e^-5	0.136	INTERGENIC
3L	11725003	3L_11725003_SNP [dm3] 3L_11731903_SNP [dm6]	A	C	1.281e^-5	0.136	NON_SYNONYMOUS_CODING CG32088 UPSTREAM CG32087
3L	5718979	3L_5718979_SNP [dm3] 3L_5725879_SNP [dm6]	T	G	1.289e^-5	0.136	INTRON sif
2L	12798141	2L_12798141_SNP [dm3] 2L_12798141_SNP [dm6]	C	T	1.290e^-5	0.136	INTERGENIC
X	7038915	X_7038915_SNP [dm3] X_7144882_SNP [dm6]	C	G	1.291e^-5	0.136	DOWNSTREAM CR32730 INTRON CG9650
2L	18510927	2L_18510927_SNP [dm3] 2L_18510927_SNP [dm6]	T	C	1.296e^-5	0.136	INTRON CG10178
2R	6595012	2R_6595012_SNP [dm3] 2R_10707507_SNP [dm6]	T	C	1.307e^-5	0.136	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad
3L	16662994	3L_16662994_SNP [dm3] 3L_16669894_SNP [dm6]	T	G	1.322e^-5	0.137	DOWNSTREAM CR45241 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13021621	2R_13021621_SNP [dm3] 2R_17134116_SNP [dm6]	G	A	1.349e^-5	0.139	UPSTREAM CG11400 DOWNSTREAM Acp54A1 INTERGENIC
X	18019316	X_18019316_SNP [dm3] X_18125283_SNP [dm6]	C	G	1.374e^-5	0.139	NON_SYNONYMOUS_CODING CG32553 DOWNSTREAM mir-969
2L	12356492	2L_12356492_SNP [dm3] 2L_12356492_SNP [dm6]	C	T	1.375e^-5	0.139	START_GAINED CG17010 UTR_5_PRIME CG17010 INTRON bru-2
3L	5469069	3L_5469069_SNP [dm3] 3L_5475969_SNP [dm6]	C	T	1.376e^-5	0.139	INTERGENIC
2L	11288243	2L_11288243_SNP [dm3] 2L_11288243_SNP [dm6]	G	T	1.383e^-5	0.139	INTERGENIC
3L	5692031	3L_5692031_SNP [dm3] 3L_5698931_SNP [dm6]	T	C	1.391e^-5	0.139	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo
X	18020954	X_18020954_SNP [dm3] X_18126921_SNP [dm6]	A	C	1.412e^-5	0.139	INTRON CG32553
2R	10254359	2R_10254359_DEL [dm3] 2R_14366854_DEL [dm6]	TT	T	1.422e^-5	0.139	UTR_5_PRIME CG34442 DOWNSTREAM CG34184
3L	5120746	3L_5120746_SNP [dm3] 3L_5127646_SNP [dm6]	G	A	1.425e^-5	0.139	INTERGENIC
2R	13217816	2R_13217816_SNP [dm3] 2R_17330311_SNP [dm6]	G	A	1.428e^-5	0.139	INTRON mbl
2R	17757444	2R_17757444_SNP [dm3] 2R_21869939_SNP [dm6]	G	A	1.444e^-5	0.139	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16668673	3L_16668673_SNP [dm3] 3L_16675573_SNP [dm6]	C	T	1.447e^-5	0.139	DOWNSTREAM Lasp INTRON CG13032	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14860109	2R_14860109_SNP [dm3] 2R_18972604_SNP [dm6]	G	T	1.455e^-5	0.139	UPSTREAM Topors & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7012843	2L_7012843_SNP [dm3] 2L_7012843_SNP [dm6]	G	A	1.462e^-5	0.139	UPSTREAM CG43322 DOWNSTREAM CG43321 INTERGENIC
3R	4098055	3R_4098055_SNP [dm3] 3R_8272333_SNP [dm6]	T	C	1.471e^-5	0.139	INTERGENIC	regulatory region REDfly_CRMs
3L	5636867	3L_5636867_SNP [dm3] 3L_5643767_SNP [dm6]	T	G	1.476e^-5	0.139	INTRON Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5695825	3L_5695825_SNP [dm3] 3L_5702725_SNP [dm6]	T	G	1.490e^-5	0.139	INTRON sif
2R	7001167	2R_7001167_SNP [dm3] 2R_11113662_SNP [dm6]	G	A	1.492e^-5	0.139	INTRON luna
2R	7001189	2R_7001189_SNP [dm3] 2R_11113684_SNP [dm6]	A	G	1.492e^-5	0.139	INTRON luna
3L	6105620	3L_6105620_SNP [dm3] 3L_6112520_SNP [dm6]	T	A	1.530e^-5	0.142	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	17050255	3L_17050255_SNP [dm3] 3L_17057155_SNP [dm6]	T	C	1.554e^-5	0.144	SYNONYMOUS_CODING CG7724	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2L	10685668	2L_10685668_SNP [dm3] 2L_10685668_SNP [dm6]	A	G	1.579e^-5	0.145	DOWNSTREAM CG7296 INTERGENIC	TF binding site mE1_TFBS_zfh1
2L	7562039	2L_7562039_SNP [dm3] 2L_7562039_SNP [dm6]	T	C	1.591e^-5	0.146	INTRON RapGAP1
3L	5262883	3L_5262883_SNP [dm3] 3L_5269783_SNP [dm6]	G	A	1.610e^-5	0.146	INTRON shep
3L	3637402	3L_3637402_SNP [dm3] 3L_3637402_SNP [dm6]	A	G	1.613e^-5	0.146	INTRON dar1
3R	7682071	3R_7682071_SNP [dm3] 3R_11856349_SNP [dm6]	G	A	1.632e^-5	0.146	INTRON CG6959	TF binding site mE1_TFBS_cad
3L	6164551	3L_6164551_SNP [dm3] 3L_6171451_SNP [dm6]	T	G	1.634e^-5	0.146	NON_SYNONYMOUS_CODING CG10289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	6164560	3L_6164560_SNP [dm3] 3L_6171460_SNP [dm6]	C	T	1.634e^-5	0.146	NON_SYNONYMOUS_CODING CG10289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	2534550	3L_2534550_SNP [dm3] 3L_2534550_SNP [dm6]	C	T	1.652e^-5	0.147	INTRON Spn
X	22096918	X_22096918_SNP [dm3] X_22695082_SNP [dm6]	G	A	1.663e^-5	0.147	INTRON CR44997
2R	7001092	2R_7001092_SNP [dm3] 2R_11113587_SNP [dm6]	G	C	1.729e^-5	0.152	INTRON luna
2L	14607334	2L_14607334_SNP [dm3] 2L_14607334_SNP [dm6]	C	A	1.744e^-5	0.153	INTRON osp
2R	12967989	2R_12967989_SNP [dm3] 2R_17080484_SNP [dm6]	C	A	1.776e^-5	0.155	INTRON CG30460
2L	12790803	2L_12790803_DEL [dm3] 2L_12790803_DEL [dm6]	CCTTTTGCATTG...	C	1.777e^-5	0.155	INTERGENIC
2L	1938450	2L_1938450_SNP [dm3] 2L_1938450_SNP [dm6]	T	C	1.898e^-5	0.163	UPSTREAM tRNA:G3:22BCa INTRON CG7337	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	1938459	2L_1938459_MNP [dm3] 2L_1938459_MNP [dm6]	AAGT	GTTC	1.898e^-5	0.163	UPSTREAM tRNA:G3:22BCa INTRON CG7337	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	6994734	2R_6994734_SNP [dm3] 2R_11107229_SNP [dm6]	A	T	1.986e^-5	0.17	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	17103861	3L_17103861_SNP [dm3] 3L_17110761_SNP [dm6]	C	T	2.028e^-5	0.172	INTRON Rbp6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17103862	3L_17103862_SNP [dm3] 3L_17110762_SNP [dm6]	C	T	2.028e^-5	0.172	INTRON Rbp6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16676150	3L_16676150_SNP [dm3] 3L_16683050_SNP [dm6]	G	A	2.038e^-5	0.172	INTRON Lasp & 1 other
2R	15840879	2R_15840879_SNP [dm3] 2R_19953374_SNP [dm6]	A	T	2.058e^-5	0.173	UPSTREAM CG44622 INTERGENIC
X	6678919	X_6678919_SNP [dm3] X_6784886_SNP [dm6]	C	T	2.063e^-5	0.173	INTRON C3G
2L	16923698	2L_16923698_SNP [dm3] 2L_16923698_SNP [dm6]	G	A	2.081e^-5	0.173	INTERGENIC
3L	16677022	3L_16677022_SNP [dm3] 3L_16683922_SNP [dm6]	G	A	2.081e^-5	0.173	INTRON Lasp & 1 other
2R	11952050	2R_11952050_SNP [dm3] 2R_16064545_SNP [dm6]	A	C	2.097e^-5	0.173	DOWNSTREAM mir-137 INTERGENIC
2L	12767040	2L_12767040_SNP [dm3] 2L_12767040_SNP [dm6]	G	C	2.120e^-5	0.174	INTERGENIC
2L	9020725	2L_9020725_SNP [dm3] 2L_9020725_SNP [dm6]	A	T	2.132e^-5	0.174	INTERGENIC
2R	15209159	2R_15209159_SNP [dm3] 2R_19321654_SNP [dm6]	C	T	2.138e^-5	0.174	INTRON Rgk1	TF binding site mE1_TFBS_inv
3L	13877013	3L_13877013_SNP [dm3] 3L_13883913_SNP [dm6]	C	T	2.141e^-5	0.174	DOWNSTREAM CG13737 INTRON dysc
X	22249763	X_22249763_SNP [dm3] X_22847927_SNP [dm6]	G	A	2.179e^-5	0.176	INTRON fog & 1 other
X	17520819	X_17520819_SNP [dm3] X_17626786_SNP [dm6]	G	A	2.185e^-5	0.176	INTRON stas	TF binding site BDTNP1_TFBS_dl
2L	13114338	2L_13114338_SNP [dm3] 2L_13114338_SNP [dm6]	G	C	2.222e^-5	0.178	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	24843551	3R_24843551_SNP [dm3] 3R_29017829_SNP [dm6]	A	G	2.234e^-5	0.178	INTRON wat
2R	18889647	2R_18889647_SNP [dm3] 2R_23002124_SNP [dm6]	A	C	2.247e^-5	0.178	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	24133559	3R_24133559_SNP [dm3] 3R_28307837_SNP [dm6]	C	T	2.252e^-5	0.178	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15875207	3L_15875207_SNP [dm3] 3L_15882107_SNP [dm6]	A	T	2.257e^-5	0.178	INTRON pHCl
X	22233314	X_22233314_DEL [dm3] X_22831478_DEL [dm6]	CTTCC	C	2.280e^-5	0.179	UPSTREAM CG42346 INTRON fog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_tll mE1_TFBS_inv
X	6888435	X_6888435_SNP [dm3] X_6994402_SNP [dm6]	A	C	2.334e^-5	0.18	UPSTREAM Inx7 INTRON Inx7	TF binding site BDTNP1_TFBS_dl
X	6888503	X_6888503_SNP [dm3] X_6994470_SNP [dm6]	C	T	2.334e^-5	0.18	UPSTREAM Inx7 INTRON Inx7	TF binding site BDTNP1_TFBS_dl
X	6888524	X_6888524_SNP [dm3] X_6994491_SNP [dm6]	A	T	2.334e^-5	0.18	UPSTREAM Inx7 INTRON Inx7	TF binding site BDTNP1_TFBS_dl
X	7119326	X_7119326_SNP [dm3] X_7225293_SNP [dm6]	T	A	2.334e^-5	0.18	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5398255	3L_5398255_SNP [dm3] 3L_5405155_SNP [dm6]	A	G	2.387e^-5	0.183	INTERGENIC
2R	3792273	2R_3792273_SNP [dm3] 2R_7904768_SNP [dm6]	G	C	2.413e^-5	0.185	INTRON CG30377
3R	10112465	3R_10112465_SNP [dm3] 3R_14286743_SNP [dm6]	T	A	2.425e^-5	0.185	UTR_5_PRIME trx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	13021998	2R_13021998_SNP [dm3] 2R_17134493_SNP [dm6]	C	T	2.442e^-5	0.185	NON_SYNONYMOUS_CODING CG11400 DOWNSTREAM Acp54A1
3L	5344254	3L_5344254_SNP [dm3] 3L_5351154_SNP [dm6]	T	G	2.468e^-5	0.186	INTRON lama
2L	14586643	2L_14586643_SNP [dm3] 2L_14586643_SNP [dm6]	A	G	2.468e^-5	0.186	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	8692526	X_8692526_SNP [dm3] X_8798493_SNP [dm6]	C	T	2.532e^-5	0.188	INTRON Lim1
2L	8011329	2L_8011329_SNP [dm3] 2L_8011329_SNP [dm6]	T	G	2.543e^-5	0.188	UPSTREAM Tg & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	17383422	3L_17383422_SNP [dm3] 3L_17390322_SNP [dm6]	T	G	2.544e^-5	0.188	INTERGENIC
X	22248397	X_22248397_INS [dm3] X_22846561_INS [dm6]	A	GTATG	2.548e^-5	0.188	INTRON fog & 1 other
3L	454934	3L_454934_SNP [dm3] 3L_454934_SNP [dm6]	T	A	2.553e^-5	0.188	INTRON klar
2R	19339888	2R_19339888_SNP [dm3] 2R_23452365_SNP [dm6]	T	C	2.565e^-5	0.189	INTRON CG43795
2L	15507237	2L_15507237_SNP [dm3] 2L_15507237_SNP [dm6]	C	G	2.605e^-5	0.191	INTERGENIC
3L	16670741	3L_16670741_SNP [dm3] 3L_16677641_SNP [dm6]	A	G	2.616e^-5	0.191	UTR_3_PRIME Lasp & 1 other
3L	16666850	3L_16666850_SNP [dm3] 3L_16673750_SNP [dm6]	G	A	2.641e^-5	0.192	UPSTREAM CG13032 & 1 other INTERGENIC	regulatory region REDfly_CRMs
3L	5345540	3L_5345540_INS [dm3] 3L_5352440_INS [dm6]	C	CA	2.647e^-5	0.192	UPSTREAM lama INTRON lama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
X	22237873	X_22237873_SNP [dm3] X_22836037_SNP [dm6]	G	T	2.661e^-5	0.192	INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4596081	3L_4596081_SNP [dm3] 3L_4596081_SNP [dm6]	G	A	2.684e^-5	0.193	SYNONYMOUS_CODING Src64B	TF binding site mE1_TFBS_cad
3L	4750825	3L_4750825_SNP [dm3] 3L_4750825_SNP [dm6]	T	C	2.716e^-5	0.194	INTRON RhoGEF64C
3L	18820962	3L_18820962_SNP [dm3] 3L_18827862_SNP [dm6]	C	T	2.748e^-5	0.196	SYNONYMOUS_CODING Cat DOWNSTREAM Indy	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	16666125	3L_16666125_SNP [dm3] 3L_16673025_SNP [dm6]	T	A	2.784e^-5	0.197	UPSTREAM CG13032 INTRON zetaCOP
X	18018696	X_18018696_INS [dm3] X_18124663_INS [dm6]	T	TTACAAAATATGTTTACATA...	2.786e^-5	0.197	UTR_3_PRIME CG32553 DOWNSTREAM mir-969
2L	10685799	2L_10685799_DEL [dm3] 2L_10685799_DEL [dm6]	TTGCATA	C	2.819e^-5	0.198	DOWNSTREAM CG7296 INTERGENIC	TF binding site mE1_TFBS_zfh1
X	22229044	X_22229044_SNP [dm3] X_22827208_SNP [dm6]	T	C	2.824e^-5	0.198	NON_SYNONYMOUS_CODING fog
X	6678080	X_6678080_SNP [dm3] X_6784047_SNP [dm6]	C	T	2.826e^-5	0.198	SYNONYMOUS_CODING C3G	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6994684	2R_6994684_SNP [dm3] 2R_11107179_SNP [dm6]	C	T	2.897e^-5	0.201	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl
3L	5315477	3L_5315477_SNP [dm3] 3L_5322377_SNP [dm6]	G	A	2.953e^-5	0.201	INTERGENIC
3L	5343930	3L_5343930_SNP [dm3] 3L_5350830_SNP [dm6]	C	T	2.953e^-5	0.201	INTRON lama
3L	5386885	3L_5386885_SNP [dm3] 3L_5393785_SNP [dm6]	G	A	2.953e^-5	0.201	INTERGENIC
3L	5604104	3L_5604104_SNP [dm3] 3L_5611004_SNP [dm6]	G	A	2.953e^-5	0.201	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	5645522	3L_5645522_SNP [dm3] 3L_5652422_SNP [dm6]	C	A	2.953e^-5	0.201	DOWNSTREAM Blimp-1 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	5686074	3L_5686074_SNP [dm3] 3L_5692974_SNP [dm6]	T	G	2.953e^-5	0.201	INTRON sif
3L	5687431	3L_5687431_SNP [dm3] 3L_5694331_SNP [dm6]	G	A	2.953e^-5	0.201	INTRON sif
3L	16667206	3L_16667206_SNP [dm3] 3L_16674106_SNP [dm6]	C	T	3.009e^-5	0.204	UTR_5_PRIME CG13032 UPSTREAM zetaCOP	regulatory region REDfly_CRMs
X	21266542	X_21266542_SNP [dm3] X_21395515_SNP [dm6]	T	A	3.036e^-5	0.205	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6151686	2L_6151686_DEL [dm3] 2L_6151686_DEL [dm6]	AATTG	A	3.063e^-5	0.206	UPSTREAM Muc26B INTERGENIC
2L	5472571	2L_5472571_SNP [dm3] 2L_5472571_SNP [dm6]	C	A	3.103e^-5	0.206	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5472572	2L_5472572_SNP [dm3] 2L_5472572_SNP [dm6]	T	A	3.103e^-5	0.206	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4073253	2L_4073253_SNP [dm3] 2L_4073253_SNP [dm6]	C	G	3.104e^-5	0.206	INTRON ed
X	22261509	X_22261509_SNP [dm3] X_22859673_SNP [dm6]	C	T	3.145e^-5	0.206	INTRON CG42346	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22261517	X_22261517_SNP [dm3] X_22859681_SNP [dm6]	C	A	3.145e^-5	0.206	INTRON CG42346	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22242450	X_22242450_SNP [dm3] X_22840614_SNP [dm6]	A	T	3.148e^-5	0.206	INTRON fog & 1 other
X	22247275	X_22247275_SNP [dm3] X_22845439_SNP [dm6]	C	T	3.162e^-5	0.206	INTRON fog & 1 other
3L	16694703	3L_16694703_DEL [dm3] 3L_16701603_DEL [dm6]	TGTTGT	CAA	3.186e^-5	0.206	INTRON Lasp & 1 other
3L	16670731	3L_16670731_SNP [dm3] 3L_16677631_SNP [dm6]	A	T	3.193e^-5	0.206	UTR_3_PRIME Lasp & 1 other
X	18020962	X_18020962_SNP [dm3] X_18126929_SNP [dm6]	A	T	3.195e^-5	0.206	INTRON CG32553
2L	10808760	2L_10808760_SNP [dm3] 2L_10808760_SNP [dm6]	G	T	3.195e^-5	0.206	INTRON Nos
2L	11288345	2L_11288345_SNP [dm3] 2L_11288345_SNP [dm6]	T	A	3.258e^-5	0.21	INTERGENIC
3R	14361078	3R_14361078_SNP [dm3] 3R_18535356_SNP [dm6]	G	A	3.277e^-5	0.21	INTRON fru
2L	2832216	2L_2832216_SNP [dm3] 2L_2832216_SNP [dm6]	T	A	3.296e^-5	0.211	INTERGENIC
3L	5461108	3L_5461108_SNP [dm3] 3L_5468008_SNP [dm6]	A	T	3.321e^-5	0.212	INTERGENIC
3R	13562985	3R_13562985_SNP [dm3] 3R_17737263_SNP [dm6]	G	T	3.365e^-5	0.213	UTR_5_PRIME TyrRII
3R	23205887	3R_23205887_SNP [dm3] 3R_27380165_SNP [dm6]	T	G	3.371e^-5	0.213	UTR_3_PRIME side INTRON side
2L	8386767	2L_8386767_SNP [dm3] 2L_8386767_SNP [dm6]	G	T	3.372e^-5	0.213	SYNONYMOUS_CODING CG13384	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7635063	2R_7635063_SNP [dm3] 2R_11747558_SNP [dm6]	G	A	3.455e^-5	0.217	INTERGENIC
2L	6151695	2L_6151695_DEL [dm3] 2L_6151695_DEL [dm6]	AATTGCAATACTCAATTATT...	A	3.467e^-5	0.217	UPSTREAM Muc26B INTERGENIC
2R	15209212	2R_15209212_SNP [dm3] 2R_19321707_SNP [dm6]	C	G	3.478e^-5	0.217	INTRON Rgk1	TF binding site mE1_TFBS_inv
X	20568866	X_20568866_SNP [dm3] X_20697839_SNP [dm6]	C	G	3.514e^-5	0.219	DOWNSTREAM run INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15618377	3L_15618377_DEL [dm3] 3L_15625277_DEL [dm6]	AG	A	3.563e^-5	0.221	INTRON comm3	TF binding site mE1_TFBS_Trl
2L	14608628	2L_14608628_SNP [dm3] 2L_14608628_SNP [dm6]	A	T	3.572e^-5	0.221	INTRON osp
2L	12352598	2L_12352598_SNP [dm3] 2L_12352598_SNP [dm6]	A	G	3.593e^-5	0.221	SYNONYMOUS_CODING bru-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	18510730	2L_18510730_SNP [dm3] 2L_18510730_SNP [dm6]	G	T	3.606e^-5	0.221	INTRON CG10178
4	121889	4_121889_SNP [dm3] 4_101263_SNP [dm6]	C	A	3.629e^-5	0.222	UTR_3_PRIME pan INTRON pan	transposable element FlyBase
2L	10684950	2L_10684950_SNP [dm3] 2L_10684950_SNP [dm6]	C	A	3.632e^-5	0.222	UPSTREAM CG7299 INTERGENIC
3L	6633027	3L_6633027_SNP [dm3] 3L_6639927_SNP [dm6]	A	G	3.697e^-5	0.225	UPSTREAM CR45238 INTERGENIC
X	8628220	X_8628220_SNP [dm3] X_8734187_SNP [dm6]	A	C	3.709e^-5	0.225	INTERGENIC
2L	11282176	2L_11282176_SNP [dm3] 2L_11282176_SNP [dm6]	A	G	3.719e^-5	0.225	START_GAINED mre11 UTR_5_PRIME mre11 DOWNSTREAM Ppt2	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
X	5731481	X_5731481_SNP [dm3] X_5837448_SNP [dm6]	G	A	3.731e^-5	0.225	SYNONYMOUS_CODING CG15765	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3693283	2L_3693283_SNP [dm3] 2L_3693283_SNP [dm6]	T	G	3.741e^-5	0.225	UTR_3_PRIME Acp24A4 UPSTREAM CG16704 & 1 other DOWNSTREAM Acp24A4 & 1 other
3R	25847137	3R_25847137_SNP [dm3] 3R_30021415_SNP [dm6]	G	T	3.759e^-5	0.225	DOWNSTREAM RpS28a INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3L	5704594	3L_5704594_SNP [dm3] 3L_5711494_SNP [dm6]	T	C	3.796e^-5	0.226	INTRON sif	TF binding site mE1_TFBS_chinmo
2R	6994779	2R_6994779_SNP [dm3] 2R_11107274_SNP [dm6]	C	A	3.799e^-5	0.226	UPSTREAM luna INTRON luna	TF binding site mE1_TFBS_Trl
X	6517597	X_6517597_SNP [dm3] X_6623564_SNP [dm6]	A	G	3.826e^-5	0.227	INTRON pigs
2L	12595354	2L_12595354_SNP [dm3] 2L_12595354_SNP [dm6]	C	A	3.848e^-5	0.227	INTRON nub
X	13016933	X_13016933_SNP [dm3] X_13122900_SNP [dm6]	G	C	3.886e^-5	0.228	UTR_3_PRIME CG42237 & 1 other	TF binding site mE1_TFBS_cad
3R	17660095	3R_17660095_DEL [dm3] 3R_21834373_DEL [dm6]	GA	G	3.893e^-5	0.228	DOWNSTREAM Gr93a INTERGENIC
X	6642252	X_6642252_SNP [dm3] X_6748219_SNP [dm6]	C	A	3.904e^-5	0.228	UPSTREAM CR44964 INTRON CG14439
2L	16780531	2L_16780531_SNP [dm3] 2L_16780531_SNP [dm6]	G	C	3.938e^-5	0.229	INTRON Mhc
3L	4750900	3L_4750900_SNP [dm3] 3L_4750900_SNP [dm6]	C	A	3.944e^-5	0.229	INTRON RhoGEF64C
3L	15870077	3L_15870077_SNP [dm3] 3L_15876977_SNP [dm6]	A	C	4.050e^-5	0.234	UPSTREAM CR44051 INTRON pHCl
3L	10813788	3L_10813788_SNP [dm3] 3L_10820688_SNP [dm6]	C	T	4.078e^-5	0.234	INTERGENIC
2L	14597706	2L_14597706_SNP [dm3] 2L_14597706_SNP [dm6]	C	T	4.095e^-5	0.234	INTERGENIC
2L	14598962	2L_14598962_DEL [dm3] 2L_14598962_DEL [dm6]	TATTT	T	4.095e^-5	0.234	UPSTREAM tRNA:P:35Bc DOWNSTREAM osp & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14607033	2L_14607033_SNP [dm3] 2L_14607033_SNP [dm6]	T	G	4.095e^-5	0.234	INTRON osp
3L	6904448	3L_6904448_INS [dm3] 3L_6911348_INS [dm6]	C	CC	4.144e^-5	0.235	DOWNSTREAM Prat2 INTERGENIC
2L	21067616	2L_21067616_SNP [dm3] 2L_21067616_SNP [dm6]	C	T	4.149e^-5	0.235	INTRON CG9265
2L	10897753	2L_10897753_SNP [dm3] 2L_10897753_SNP [dm6]	T	C	4.151e^-5	0.235	INTERGENIC
2L	14819760	2L_14819760_SNP [dm3] 2L_14819760_SNP [dm6]	G	A	4.164e^-5	0.235	INTERGENIC
2R	12053646	2R_12053646_SNP [dm3] 2R_16166141_SNP [dm6]	G	A	4.169e^-5	0.235	SYNONYMOUS_CODING lbk	TF binding site mE1_TFBS_cad
2R	13217829	2R_13217829_SNP [dm3] 2R_17330324_SNP [dm6]	A	T	4.186e^-5	0.235	INTRON mbl
2R	13217830	2R_13217830_SNP [dm3] 2R_17330325_SNP [dm6]	A	T	4.186e^-5	0.235	INTRON mbl
3R	24131614	3R_24131614_SNP [dm3] 3R_28305892_SNP [dm6]	A	G	4.212e^-5	0.235	INTERGENIC
2L	10685614	2L_10685614_DEL [dm3] 2L_10685614_DEL [dm6]	TTTTACTAAGCAAAATA...	C	4.244e^-5	0.235	DOWNSTREAM CG7296 INTERGENIC
2L	6154613	2L_6154613_INS [dm3] 2L_6154613_INS [dm6]	A	AGCA	4.265e^-5	0.235	DOWNSTREAM Muc26B INTRON CG31639	TF binding site mE1_TFBS_chinmo
3L	16675021	3L_16675021_SNP [dm3] 3L_16681921_SNP [dm6]	C	T	4.266e^-5	0.235	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_twi
2L	3369583	2L_3369583_SNP [dm3] 2L_3369583_SNP [dm6]	G	A	4.266e^-5	0.235	UPSTREAM CG34394 INTRON CG34394
X	13022099	X_13022099_SNP [dm3] X_13128066_SNP [dm6]	A	T	4.267e^-5	0.235	UPSTREAM CG15717 & 1 other DOWNSTREAM snmRNA:204 INTRON CG32638	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Trl
2R	17376433	2R_17376433_SNP [dm3] 2R_21488928_SNP [dm6]	T	A	4.288e^-5	0.235	INTRON Fkbp14
3L	850689	3L_850689_SNP [dm3] 3L_850689_SNP [dm6]	G	A	4.304e^-5	0.236	SYNONYMOUS_CODING CG13889 UPSTREAM CG13890	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	15309233	2R_15309233_SNP [dm3] 2R_19421728_SNP [dm6]	C	G	4.363e^-5	0.238	INTRON hts	TF binding site BDTNP1_TFBS_dl
3L	13119870	3L_13119870_SNP [dm3] 3L_13126770_SNP [dm6]	G	A	4.373e^-5	0.238	INTERGENIC
2L	18510907	2L_18510907_SNP [dm3] 2L_18510907_SNP [dm6]	C	A	4.390e^-5	0.238	INTRON CG10178
X	6678498	X_6678498_SNP [dm3] X_6784465_SNP [dm6]	C	T	4.403e^-5	0.238	NON_SYNONYMOUS_CODING C3G	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15618894	3L_15618894_SNP [dm3] 3L_15625794_SNP [dm6]	T	A	4.417e^-5	0.238	INTRON comm3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20406825	X_20406825_SNP [dm3] X_20535798_SNP [dm6]	A	C	4.426e^-5	0.238	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	13062065	X_13062065_SNP [dm3] X_13168032_SNP [dm6]	G	A	4.430e^-5	0.238	INTRON CG34411
3L	3637480	3L_3637480_SNP [dm3] 3L_3637480_SNP [dm6]	G	A	4.458e^-5	0.238	INTRON dar1
3L	4426748	3L_4426748_SNP [dm3] 3L_4426748_SNP [dm6]	A	G	4.475e^-5	0.239	DOWNSTREAM CG15020 INTERGENIC
2R	1561831	2R_1561831_SNP [dm3] 2R_5674326_SNP [dm6]	G	T	4.492e^-5	0.239	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb
2R	15309245	2R_15309245_DEL [dm3] 2R_19421740_DEL [dm6]	TATGTT	T	4.505e^-5	0.239	INTRON hts	TF binding site BDTNP1_TFBS_dl
3L	11724627	3L_11724627_SNP [dm3] 3L_11731527_SNP [dm6]	C	T	4.537e^-5	0.24	SYNONYMOUS_CODING CG32088 UPSTREAM CG32087
3R	14049819	3R_14049819_SNP [dm3] 3R_18224097_SNP [dm6]	T	C	4.588e^-5	0.241	SYNONYMOUS_CODING CG7993 UPSTREAM mTerf5 DOWNSTREAM CG7168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	5340651	3L_5340651_SNP [dm3] 3L_5347551_SNP [dm6]	T	A	4.589e^-5	0.241	INTRON lama
2L	5661400	2L_5661400_SNP [dm3] 2L_5661400_SNP [dm6]	G	A	4.605e^-5	0.241	DOWNSTREAM CR44821 INTERGENIC
2L	14613781	2L_14613781_SNP [dm3] 2L_14613781_SNP [dm6]	A	T	4.616e^-5	0.241	DOWNSTREAM CR43411 INTRON osp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	22240716	X_22240716_SNP [dm3] X_22838880_SNP [dm6]	T	C	4.645e^-5	0.241	INTRON fog & 1 other
3L	16662997	3L_16662997_SNP [dm3] 3L_16669897_SNP [dm6]	C	A	4.647e^-5	0.241	DOWNSTREAM CR45241 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12128995	2R_12128995_SNP [dm3] 2R_16241490_SNP [dm6]	T	G	4.660e^-5	0.241	NON_SYNONYMOUS_CODING CG15708 UPSTREAM krimp
2L	736390	2L_736390_SNP [dm3] 2L_736390_SNP [dm6]	C	T	4.696e^-5	0.243	DOWNSTREAM Eaat2 INTERGENIC
2L	20897894	2L_20897894_SNP [dm3] 2L_20897894_SNP [dm6]	A	T	4.842e^-5	0.249	INTRON sky & 1 other
2L	5649024	2L_5649024_SNP [dm3] 2L_5649024_SNP [dm6]	A	G	4.854e^-5	0.249	INTRON CG31646
2R	17826372	2R_17826372_SNP [dm3] 2R_21938867_SNP [dm6]	C	T	4.868e^-5	0.249	INTRON Fili
2L	11285957	2L_11285957_SNP [dm3] 2L_11285957_SNP [dm6]	G	T	4.895e^-5	0.25	UPSTREAM Osi21 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4270126	3L_4270126_SNP [dm3] 3L_4270126_SNP [dm6]	A	T	4.913e^-5	0.25	INTRON CG1273	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	2007812	2L_2007812_SNP [dm3] 2L_2007812_SNP [dm6]	A	T	4.930e^-5	0.251	UPSTREAM CG15353 & 1 other DOWNSTREAM CR45712 INTERGENIC
3R	20995234	3R_20995234_SNP [dm3] 3R_25169512_SNP [dm6]	G	T	4.958e^-5	0.251	DOWNSTREAM lobo INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11721888	3L_11721888_SNP [dm3] 3L_11728788_SNP [dm6]	C	T	4.968e^-5	0.251	SYNONYMOUS_CODING CG32088 DOWNSTREAM Bmcp
2L	20464526	2L_20464526_SNP [dm3] 2L_20464526_SNP [dm6]	G	T	5.003e^-5	0.251	EXON CR44980	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	22237070	X_22237070_SNP [dm3] X_22835234_SNP [dm6]	A	C	5.004e^-5	0.251	INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3648183	3L_3648183_SNP [dm3] 3L_3648183_SNP [dm6]	C	T	5.019e^-5	0.251	INTRON dar1
2L	10891276	2L_10891276_SNP [dm3] 2L_10891276_SNP [dm6]	G	A	5.022e^-5	0.251	INTERGENIC
3L	4696545	3L_4696545_SNP [dm3] 3L_4696545_SNP [dm6]	C	T	5.058e^-5	0.252	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	5544336	2R_5544336_SNP [dm3] 2R_9656831_SNP [dm6]	C	T	5.065e^-5	0.252	INTRON Mmp2
X	22246985	X_22246985_SNP [dm3] X_22845149_SNP [dm6]	T	G	5.074e^-5	0.252	INTRON fog & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18876720	3L_18876720_SNP [dm3] 3L_18883620_SNP [dm6]	G	A	5.091e^-5	0.252	INTRON CG3961
2R	12968077	2R_12968077_SNP [dm3] 2R_17080572_SNP [dm6]	G	A	5.150e^-5	0.254	INTRON CG30460
2L	3116590	2L_3116590_SNP [dm3] 2L_3116590_SNP [dm6]	C	T	5.153e^-5	0.254	INTRON toc
3R	17058827	3R_17058827_SNP [dm3] 3R_21233105_SNP [dm6]	C	G	5.170e^-5	0.254	INTRON e	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	22240844	X_22240844_SNP [dm3] X_22839008_SNP [dm6]	A	G	5.185e^-5	0.254	INTRON fog & 1 other
X	18019796	X_18019796_SNP [dm3] X_18125763_SNP [dm6]	A	G	5.306e^-5	0.258	INTRON CG32553
2L	10460651	2L_10460651_SNP [dm3] 2L_10460651_SNP [dm6]	A	T	5.343e^-5	0.258	SYNONYMOUS_CODING LM408
3R	24138819	3R_24138819_SNP [dm3] 3R_28313097_SNP [dm6]	G	C	5.344e^-5	0.258	INTERGENIC	TF binding site mE1_TFBS_cad
3L	7808634	3L_7808634_SNP [dm3] 3L_7815534_SNP [dm6]	G	C	5.372e^-5	0.258	UTR_3_PRIME Pdp1
3L	4750914	3L_4750914_SNP [dm3] 3L_4750914_SNP [dm6]	T	A	5.379e^-5	0.258	INTRON RhoGEF64C
3L	4750930	3L_4750930_SNP [dm3] 3L_4750930_SNP [dm6]	C	T	5.379e^-5	0.258	INTRON RhoGEF64C
X	22248376	X_22248376_SNP [dm3] X_22846540_SNP [dm6]	T	A	5.381e^-5	0.258	INTRON fog & 1 other
2L	11781350	2L_11781350_SNP [dm3] 2L_11781350_SNP [dm6]	C	A	5.427e^-5	0.258	INTERGENIC
X	22246535	X_22246535_SNP [dm3] X_22844699_SNP [dm6]	T	C	5.428e^-5	0.258	INTRON fog & 1 other
2R	17724122	2R_17724122_SNP [dm3] 2R_21836617_SNP [dm6]	A	C	5.428e^-5	0.258	UPSTREAM CG4377 DOWNSTREAM CG4372 INTERGENIC
2R	12775744	2R_12775744_SNP [dm3] 2R_16888239_SNP [dm6]	A	T	5.446e^-5	0.258	INTRON CG8910
3L	6165025	3L_6165025_SNP [dm3] 3L_6171925_SNP [dm6]	A	G	5.458e^-5	0.258	SPLICE_SITE_REGION CG10289 INTRON CG10289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6165074	3L_6165074_SNP [dm3] 3L_6171974_SNP [dm6]	T	G	5.458e^-5	0.258	SPLICE_SITE_REGION CG10289 INTRON CG10289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	22245452	X_22245452_SNP [dm3] X_22843616_SNP [dm6]	C	A	5.459e^-5	0.258	INTRON fog & 1 other
2R	16829646	2R_16829646_SNP [dm3] 2R_20942141_SNP [dm6]	C	G	5.494e^-5	0.258	INTERGENIC
X	21266565	X_21266565_SNP [dm3] X_21395538_SNP [dm6]	G	A	5.499e^-5	0.258	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14620491	2R_14620491_SNP [dm3] 2R_18732986_SNP [dm6]	T	C	5.509e^-5	0.258	INTRON Hs3st-A
2L	14609032	2L_14609032_SNP [dm3] 2L_14609032_SNP [dm6]	C	A	5.534e^-5	0.258	INTRON osp
2L	5648830	2L_5648830_SNP [dm3] 2L_5648830_SNP [dm6]	T	C	5.536e^-5	0.258	INTRON CG31646
X	18020681	X_18020681_DEL [dm3] X_18126648_DEL [dm6]	CATTTCATTTTGGAACATAC...	TTTAA	5.565e^-5	0.259	INTRON CG32553
3R	25460750	3R_25460750_SNP [dm3] 3R_29635028_SNP [dm6]	G	T	5.625e^-5	0.26	INTRON Dop1R2
3L	20587062	3L_20587062_SNP [dm3] 3L_20593962_SNP [dm6]	T	C	5.628e^-5	0.26	INTERGENIC
2R	15709629	2R_15709629_SNP [dm3] 2R_19822124_SNP [dm6]	T	A	5.644e^-5	0.26	INTERGENIC
2L	2007687	2L_2007687_SNP [dm3] 2L_2007687_SNP [dm6]	T	A	5.646e^-5	0.26	UPSTREAM CG15353 & 1 other EXON CR45712
2R	12966153	2R_12966153_SNP [dm3] 2R_17078648_SNP [dm6]	G	A	5.705e^-5	0.261	INTRON CG30460
3R	14050190	3R_14050190_SNP [dm3] 3R_18224468_SNP [dm6]	C	T	5.714e^-5	0.261	SYNONYMOUS_CODING CG7993 UPSTREAM mTerf5 DOWNSTREAM CG7168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1656035	2L_1656035_SNP [dm3] 2L_1656035_SNP [dm6]	T	C	5.717e^-5	0.261	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
X	22228777	X_22228777_SNP [dm3] X_22826941_SNP [dm6]	C	T	5.792e^-5	0.264	UTR_3_PRIME fog
2L	3628143	2L_3628143_SNP [dm3] 2L_3628143_SNP [dm6]	C	A	5.824e^-5	0.264	INTRON for
2L	20464523	2L_20464523_SNP [dm3] 2L_20464523_SNP [dm6]	A	T	5.827e^-5	0.264	EXON CR44980	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14128863	2R_14128863_SNP [dm3] 2R_18241358_SNP [dm6]	A	C	5.846e^-5	0.264	INTERGENIC
2L	12797795	2L_12797795_SNP [dm3] 2L_12797795_SNP [dm6]	G	A	5.893e^-5	0.264	INTERGENIC
2R	6195050	2R_6195050_SNP [dm3] 2R_10307545_SNP [dm6]	C	A	5.908e^-5	0.264	SYNONYMOUS_CODING JhI-1 DOWNSTREAM CAP	TF binding site mE1_TFBS_inv
2L	14376400	2L_14376400_SNP [dm3] 2L_14376400_SNP [dm6]	G	A	5.912e^-5	0.264	INTERGENIC
X	6517577	X_6517577_SNP [dm3] X_6623544_SNP [dm6]	T	C	5.919e^-5	0.264	INTRON pigs
3L	5216243	3L_5216243_SNP [dm3] 3L_5223143_SNP [dm6]	G	A	5.945e^-5	0.264	INTRON shep
2L	11288236	2L_11288236_DEL [dm3] 2L_11288236_DEL [dm6]	GG	A	5.967e^-5	0.264	INTERGENIC
2L	11288293	2L_11288293_SNP [dm3] 2L_11288293_SNP [dm6]	A	G	5.967e^-5	0.264	INTERGENIC
2L	11288294	2L_11288294_SNP [dm3] 2L_11288294_SNP [dm6]	T	G	5.967e^-5	0.264	INTERGENIC
3L	16869304	3L_16869304_SNP [dm3] 3L_16876204_SNP [dm6]	A	C	5.976e^-5	0.264	INTRON Lmpt	TF binding site mE1_TFBS_cnc
X	20359949	X_20359949_SNP [dm3] X_20488922_SNP [dm6]	T	A	5.984e^-5	0.264	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl
3L	12173725	3L_12173725_SNP [dm3] 3L_12180625_SNP [dm6]	C	T	6.056e^-5	0.266	INTRON CAH2
2L	5648607	2L_5648607_SNP [dm3] 2L_5648607_SNP [dm6]	A	G	6.090e^-5	0.266	INTRON CG31646
3L	16672187	3L_16672187_SNP [dm3] 3L_16679087_SNP [dm6]	C	T	6.105e^-5	0.266	NON_SYNONYMOUS_CODING Lasp START_GAINED CG43954 UTR_5_PRIME CG43954 INTRON Lasp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6827715	2L_6827715_SNP [dm3] 2L_6827715_SNP [dm6]	A	C	6.135e^-5	0.266	INTRON sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	22250023	X_22250023_SNP [dm3] X_22848187_SNP [dm6]	A	G	6.146e^-5	0.266	INTRON fog & 1 other
3L	8724603	3L_8724603_SNP [dm3] 3L_8731503_SNP [dm6]	C	T	6.160e^-5	0.266	UPSTREAM Cp16 DOWNSTREAM Cp19 INTERGENIC
2L	10460548	2L_10460548_SNP [dm3] 2L_10460548_SNP [dm6]	G	T	6.161e^-5	0.266	INTRON LM408
X	4651672	X_4651672_SNP [dm3] X_4757639_SNP [dm6]	T	C	6.190e^-5	0.266	INTERGENIC
3L	2751007	3L_2751007_SNP [dm3] 3L_2751007_SNP [dm6]	C	T	6.199e^-5	0.266	INTRON Mrtf
2L	12412012	2L_12412012_SNP [dm3] 2L_12412012_SNP [dm6]	G	A	6.214e^-5	0.266	INTRON vir-1
2L	4826430	2L_4826430_SNP [dm3] 2L_4826430_SNP [dm6]	T	C	6.231e^-5	0.266	INTRON CG15628
3L	3615302	3L_3615302_SNP [dm3] 3L_3615302_SNP [dm6]	G	A	6.236e^-5	0.266	UPSTREAM CG10357 DOWNSTREAM CG10359 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	22222084	X_22222084_SNP [dm3] X_22820248_SNP [dm6]	T	A	6.259e^-5	0.266	INTERGENIC
2L	11288289	2L_11288289_SNP [dm3] 2L_11288289_SNP [dm6]	A	C	6.280e^-5	0.266	INTERGENIC
X	18022067	X_18022067_SNP [dm3] X_18128034_SNP [dm6]	G	C	6.286e^-5	0.266	UPSTREAM mir-210 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4826436	2L_4826436_SNP [dm3] 2L_4826436_SNP [dm6]	G	T	6.313e^-5	0.266	INTRON CG15628
3L	15875128	3L_15875128_SNP [dm3] 3L_15882028_SNP [dm6]	C	T	6.364e^-5	0.266	INTRON pHCl
3L	6167640	3L_6167640_SNP [dm3] 3L_6174540_SNP [dm6]	G	A	6.381e^-5	0.266	NON_SYNONYMOUS_CODING CG7376 UPSTREAM CG10289	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6167767	3L_6167767_SNP [dm3] 3L_6174667_SNP [dm6]	C	G	6.381e^-5	0.266	SYNONYMOUS_CODING CG7376 UPSTREAM CG10289	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	6167776	3L_6167776_SNP [dm3] 3L_6174676_SNP [dm6]	G	A	6.381e^-5	0.266	SYNONYMOUS_CODING CG7376 UPSTREAM CG10289	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	6167888	3L_6167888_SNP [dm3] 3L_6174788_SNP [dm6]	C	A	6.381e^-5	0.266	NON_SYNONYMOUS_CODING CG7376 UPSTREAM CG10289	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	6167948	3L_6167948_SNP [dm3] 3L_6174848_SNP [dm6]	G	A	6.381e^-5	0.266	NON_SYNONYMOUS_CODING CG7376 UPSTREAM CG10289	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	19477581	2R_19477581_INS [dm3] 2R_23590058_INS [dm6]	C	CCC	6.390e^-5	0.266	INTRON apt
2L	8349956	2L_8349956_SNP [dm3] 2L_8349956_SNP [dm6]	A	G	6.394e^-5	0.266	UTR_3_PRIME CG7778
2R	11952041	2R_11952041_SNP [dm3] 2R_16064536_SNP [dm6]	A	G	6.398e^-5	0.266	DOWNSTREAM mir-137 INTERGENIC
X	21952125	X_21952125_SNP [dm3] X_22550289_SNP [dm6]	A	T	6.416e^-5	0.266	INTERGENIC
3R	14287646	3R_14287646_INS [dm3] 3R_18461924_INS [dm6]	C	TA	6.419e^-5	0.266	INTRON fru
2L	12123250	2L_12123250_SNP [dm3] 2L_12123250_SNP [dm6]	A	G	6.436e^-5	0.266	INTRON CG17211
2L	12123255	2L_12123255_SNP [dm3] 2L_12123255_SNP [dm6]	A	G	6.436e^-5	0.266	INTRON CG17211
2L	7490046	2L_7490046_SNP [dm3] 2L_7490046_SNP [dm6]	C	T	6.454e^-5	0.266	INTRON Ziz
X	7241433	X_7241433_SNP [dm3] X_7347400_SNP [dm6]	T	G	6.476e^-5	0.266	UTR_5_PRIME CG15034 INTRON CR44357 & 1 other
3L	6160570	3L_6160570_SNP [dm3] 3L_6167470_SNP [dm6]	T	A	6.525e^-5	0.266	UTR_3_PRIME CG10289
2L	5891881	2L_5891881_SNP [dm3] 2L_5891881_SNP [dm6]	G	A	6.552e^-5	0.266	DOWNSTREAM Acp26Ab INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	5649051	2L_5649051_SNP [dm3] 2L_5649051_SNP [dm6]	C	T	6.559e^-5	0.266	INTRON CG31646
2L	8098983	2L_8098983_SNP [dm3] 2L_8098983_SNP [dm6]	T	A	6.563e^-5	0.266	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	2695553	2L_2695553_SNP [dm3] 2L_2695553_SNP [dm6]	A	G	6.585e^-5	0.266	SYNONYMOUS_CODING CG15398 INTRON CG31690
3L	1066551	3L_1066551_SNP [dm3] 3L_1066551_SNP [dm6]	G	T	6.607e^-5	0.266	INTRON bab1
2R	13047770	2R_13047770_SNP [dm3] 2R_17160265_SNP [dm6]	G	C	6.613e^-5	0.266	SYNONYMOUS_CODING CG30457
3R	26421944	3R_26421944_SNP [dm3] 3R_30596222_SNP [dm6]	C	A	6.623e^-5	0.266	UPSTREAM CG2246 & 1 other INTRON CG2246
X	2566481	X_2566481_DEL [dm3] X_2672448_DEL [dm6]	AACAATCAA	A	6.635e^-5	0.266	INTRON sgg
2L	9020788	2L_9020788_DEL [dm3] 2L_9020788_DEL [dm6]	GTAACAAGATG...	A	6.650e^-5	0.266	INTERGENIC
X	22247405	X_22247405_SNP [dm3] X_22845569_SNP [dm6]	C	T	6.654e^-5	0.266	INTRON fog & 1 other
X	22247800	X_22247800_SNP [dm3] X_22845964_SNP [dm6]	A	T	6.654e^-5	0.266	INTRON fog & 1 other
3L	16546995	3L_16546995_SNP [dm3] 3L_16553895_SNP [dm6]	A	G	6.655e^-5	0.266	INTERGENIC
2R	10836155	2R_10836155_SNP [dm3] 2R_14948650_SNP [dm6]	G	T	6.693e^-5	0.267	SYNONYMOUS_CODING aPKC	TF binding site mE1_TFBS_cad
2R	7001076	2R_7001076_SNP [dm3] 2R_11113571_SNP [dm6]	A	T	6.723e^-5	0.267	INTRON luna
2L	2240071	2L_2240071_SNP [dm3] 2L_2240071_SNP [dm6]	G	A	6.725e^-5	0.267	SYNONYMOUS_CODING Tengl1 UPSTREAM Tengl2
3L	2396082	3L_2396082_SNP [dm3] 3L_2396082_SNP [dm6]	T	G	6.726e^-5	0.267	INTRON CG45186
2R	14128725	2R_14128725_SNP [dm3] 2R_18241220_SNP [dm6]	T	C	6.823e^-5	0.269	INTERGENIC
2R	14128882	2R_14128882_SNP [dm3] 2R_18241377_SNP [dm6]	T	C	6.823e^-5	0.269	INTERGENIC
2R	14128903	2R_14128903_SNP [dm3] 2R_18241398_SNP [dm6]	T	C	6.823e^-5	0.269	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5444810	3L_5444810_SNP [dm3] 3L_5451710_SNP [dm6]	G	T	6.846e^-5	0.269	INTERGENIC
X	18014428	X_18014428_SNP [dm3] X_18120395_SNP [dm6]	C	T	6.892e^-5	0.27	DOWNSTREAM CR45605 INTERGENIC
3R	21021374	3R_21021374_SNP [dm3] 3R_25195652_SNP [dm6]	A	T	6.899e^-5	0.27	SYNONYMOUS_CODING CG13653	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7001077	2R_7001077_SNP [dm3] 2R_11113572_SNP [dm6]	G	A	6.932e^-5	0.271	INTRON luna
2R	3181948	2R_3181948_SNP [dm3] 2R_7294443_SNP [dm6]	T	C	6.970e^-5	0.272	INTRON pwn
2L	3202719	2L_3202719_SNP [dm3] 2L_3202719_SNP [dm6]	T	C	6.976e^-5	0.272	INTERGENIC
3L	4270643	3L_4270643_SNP [dm3] 3L_4270643_SNP [dm6]	A	G	6.997e^-5	0.272	INTRON CG1273	TF binding site mE1_TFBS_cad
2R	13046947	2R_13046947_SNP [dm3] 2R_17159442_SNP [dm6]	C	T	7.034e^-5	0.272	UPSTREAM CG30458 DOWNSTREAM CG30457 INTERGENIC
2R	13046963	2R_13046963_SNP [dm3] 2R_17159458_SNP [dm6]	G	T	7.034e^-5	0.272	UPSTREAM CG30458 DOWNSTREAM CG30457 INTERGENIC
2R	13047299	2R_13047299_SNP [dm3] 2R_17159794_SNP [dm6]	G	A	7.034e^-5	0.272	UPSTREAM CG30458 DOWNSTREAM CG30457 INTERGENIC
2R	17473798	2R_17473798_SNP [dm3] 2R_21586293_SNP [dm6]	A	G	7.067e^-5	0.272	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18535755	2R_18535755_SNP [dm3] 2R_22648250_SNP [dm6]	T	C	7.166e^-5	0.274	SYNONYMOUS_CODING CG34445 UPSTREAM CG34446 DOWNSTREAM CG3746
3L	6167141	3L_6167141_SNP [dm3] 3L_6174041_SNP [dm6]	T	A	7.174e^-5	0.274	UPSTREAM CG7376 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	9141262	2L_9141262_SNP [dm3] 2L_9141262_SNP [dm6]	T	A	7.190e^-5	0.274	INTRON CG32982
3L	5345111	3L_5345111_SNP [dm3] 3L_5352011_SNP [dm6]	A	G	7.214e^-5	0.274	UPSTREAM lama INTRON lama	TF binding site mE1_TFBS_HSA
2L	5122613	2L_5122613_SNP [dm3] 2L_5122613_SNP [dm6]	C	A	7.217e^-5	0.274	INTRON Msp300	TF binding site mE1_TFBS_inv
2L	5122615	2L_5122615_SNP [dm3] 2L_5122615_SNP [dm6]	C	A	7.217e^-5	0.274	INTRON Msp300	TF binding site mE1_TFBS_inv
2L	11288275	2L_11288275_SNP [dm3] 2L_11288275_SNP [dm6]	T	C	7.225e^-5	0.274	INTERGENIC
3L	4135101	3L_4135101_SNP [dm3] 3L_4135101_SNP [dm6]	C	T	7.247e^-5	0.275	SYNONYMOUS_CODING RfC4 UPSTREAM ens	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1922152	2L_1922152_SNP [dm3] 2L_1922152_SNP [dm6]	C	G	7.299e^-5	0.275	INTRON CG7337	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12608337	2R_12608337_SNP [dm3] 2R_16720832_SNP [dm6]	A	G	7.319e^-5	0.275	INTRON CG30463	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2158398	3L_2158398_SNP [dm3] 3L_2158398_SNP [dm6]	C	T	7.324e^-5	0.275	SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15038667	2L_15038667_SNP [dm3] 2L_15038667_SNP [dm6]	A	G	7.377e^-5	0.275	SYNONYMOUS_CODING CIAPIN1 UPSTREAM Su_H_ DOWNSTREAM yellow-c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	22427156	3L_22427156_SNP [dm3] 3L_22434056_SNP [dm6]	G	A	7.383e^-5	0.275	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	9669577	2R_9669577_SNP [dm3] 2R_13782072_SNP [dm6]	C	T	7.394e^-5	0.275	INTRON Cpr50Ca
3R	7674667	3R_7674667_SNP [dm3] 3R_11848945_SNP [dm6]	A	G	7.408e^-5	0.275	INTRON CG6959
3R	7659494	3R_7659494_SNP [dm3] 3R_11833772_SNP [dm6]	G	A	7.412e^-5	0.275	INTRON CG6959	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17473550	2R_17473550_INS [dm3] 2R_21586045_INS [dm6]	T	TTTTTCTTATCCATAGCCTA...	7.416e^-5	0.275	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17473553	2R_17473553_SNP [dm3] 2R_21586048_SNP [dm6]	A	T	7.416e^-5	0.275	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5417071	3L_5417071_SNP [dm3] 3L_5423971_SNP [dm6]	A	G	7.424e^-5	0.275	UPSTREAM CG34391 INTERGENIC
2R	17662784	2R_17662784_SNP [dm3] 2R_21775279_SNP [dm6]	T	A	7.428e^-5	0.275	DOWNSTREAM CG4021 INTERGENIC
3L	3889241	3L_3889241_SNP [dm3] 3L_3889241_SNP [dm6]	G	A	7.448e^-5	0.275	INTERGENIC
2L	10891088	2L_10891088_SNP [dm3] 2L_10891088_SNP [dm6]	G	C	7.543e^-5	0.277	INTERGENIC
X	22239691	X_22239691_SNP [dm3] X_22837855_SNP [dm6]	A	T	7.548e^-5	0.277	INTRON fog & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13995353	3R_13995353_SNP [dm3] 3R_18169631_SNP [dm6]	T	G	7.560e^-5	0.277	UTR_5_PRIME PP2A-B' INTRON PP2A-B'	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3212507	2L_3212507_SNP [dm3] 2L_3212507_SNP [dm6]	T	C	7.625e^-5	0.279	INTERGENIC
2L	5636159	2L_5636159_SNP [dm3] 2L_5636159_SNP [dm6]	A	T	7.694e^-5	0.281	INTRON CG31646
3R	12210079	3R_12210079_SNP [dm3] 3R_16384357_SNP [dm6]	T	A	7.739e^-5	0.282	INTRON ss	regulatory region REDfly_CRMs
2L	4423784	2L_4423784_SNP [dm3] 2L_4423784_SNP [dm6]	C	T	7.785e^-5	0.282	INTRON CG15431	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6831874	X_6831874_SNP [dm3] X_6937841_SNP [dm6]	T	C	7.786e^-5	0.282	INTRON CG14431
2R	7635090	2R_7635090_SNP [dm3] 2R_11747585_SNP [dm6]	A	C	7.796e^-5	0.282	INTERGENIC
3L	16666087	3L_16666087_SNP [dm3] 3L_16672987_SNP [dm6]	C	T	7.799e^-5	0.282	UPSTREAM CG13032 INTRON zetaCOP
2L	14249686	2L_14249686_SNP [dm3] 2L_14249686_SNP [dm6]	A	G	7.891e^-5	0.285	INTERGENIC
3L	8304203	3L_8304203_SNP [dm3] 3L_8311103_SNP [dm6]	G	A	7.999e^-5	0.288	SYNONYMOUS_CODING CG7185 UPSTREAM CR45409
2R	10475447	2R_10475447_SNP [dm3] 2R_14587942_SNP [dm6]	A	G	8.016e^-5	0.288	DOWNSTREAM ttv INTERGENIC
2R	19309014	2R_19309014_SNP [dm3] 2R_23421491_SNP [dm6]	C	T	8.050e^-5	0.289	DOWNSTREAM CG9815 INTERGENIC
2L	10891841	2L_10891841_SNP [dm3] 2L_10891841_SNP [dm6]	C	G	8.051e^-5	0.289	INTERGENIC
2L	4826440	2L_4826440_SNP [dm3] 2L_4826440_SNP [dm6]	T	C	8.146e^-5	0.291	SPLICE_SITE_REGION CG15628 INTRON CG15628
2L	2692128	2L_2692128_SNP [dm3] 2L_2692128_SNP [dm6]	T	C	8.161e^-5	0.291	INTRON CG31690
2L	1855971	2L_1855971_SNP [dm3] 2L_1855971_SNP [dm6]	G	T	8.187e^-5	0.291	INTRON wry
2L	1855972	2L_1855972_SNP [dm3] 2L_1855972_SNP [dm6]	G	A	8.187e^-5	0.291	INTRON wry
2R	15208776	2R_15208776_SNP [dm3] 2R_19321271_SNP [dm6]	C	G	8.235e^-5	0.292	INTRON Rgk1
X	17290010	X_17290010_SNP [dm3] X_17395977_SNP [dm6]	C	T	8.293e^-5	0.294	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13217825	2R_13217825_SNP [dm3] 2R_17330320_SNP [dm6]	A	G	8.343e^-5	0.295	INTRON mbl
3L	6477081	3L_6477081_SNP [dm3] 3L_6483981_SNP [dm6]	C	A	8.352e^-5	0.295	INTRON CG42747	TF binding site mE1_TFBS_cad
2L	10685432	2L_10685432_SNP [dm3] 2L_10685432_SNP [dm6]	G	A	8.382e^-5	0.295	DOWNSTREAM CG7296 INTERGENIC
2L	3212877	2L_3212877_SNP [dm3] 2L_3212877_SNP [dm6]	C	G	8.417e^-5	0.295	INTERGENIC
2L	20336415	2L_20336415_SNP [dm3] 2L_20336415_SNP [dm6]	C	G	8.419e^-5	0.295	INTRON spir
3L	22083037	3L_22083037_SNP [dm3] 3L_22089937_SNP [dm6]	A	G	8.431e^-5	0.295	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4652181	3L_4652181_SNP [dm3] 3L_4652181_SNP [dm6]	C	T	8.438e^-5	0.295	INTRON axo
X	3811330	X_3811330_SNP [dm3] X_3917297_SNP [dm6]	T	C	8.447e^-5	0.295	INTRON CG42541
3L	3823940	3L_3823940_SNP [dm3] 3L_3823940_SNP [dm6]	T	C	8.464e^-5	0.295	INTRON enc	TF binding site BDTNP1_TFBS_dl
3L	5697546	3L_5697546_SNP [dm3] 3L_5704446_SNP [dm6]	G	A	8.540e^-5	0.297	INTRON sif
3L	5345939	3L_5345939_SNP [dm3] 3L_5352839_SNP [dm6]	C	A	8.574e^-5	0.298	INTRON lama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	13997830	3R_13997830_INS [dm3] 3R_18172108_INS [dm6]	C	CAGGCCGATCTTCAACGCTT...	8.588e^-5	0.298	UPSTREAM PP2A-B' INTRON PP2A-B'	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	15618782	3L_15618782_SNP [dm3] 3L_15625682_SNP [dm6]	A	T	8.645e^-5	0.299	INTRON comm3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	22245395	X_22245395_SNP [dm3] X_22843559_SNP [dm6]	G	C	8.709e^-5	0.299	INTRON fog & 1 other
3R	14287661	3R_14287661_SNP [dm3] 3R_18461939_SNP [dm6]	A	C	8.711e^-5	0.299	INTRON fru
2L	10460575	2L_10460575_SNP [dm3] 2L_10460575_SNP [dm6]	T	A	8.714e^-5	0.299	SPLICE_SITE_REGION LM408 INTRON LM408
3L	2657847	3L_2657847_SNP [dm3] 3L_2657847_SNP [dm6]	G	A	8.724e^-5	0.299	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_chinmo
3L	5462117	3L_5462117_SNP [dm3] 3L_5469017_SNP [dm6]	C	T	8.740e^-5	0.299	INTERGENIC
2R	11484336	2R_11484336_SNP [dm3] 2R_15596831_SNP [dm6]	A	T	8.771e^-5	0.3	INTERGENIC
2L	2832227	2L_2832227_SNP [dm3] 2L_2832227_SNP [dm6]	A	G	8.788e^-5	0.3	INTERGENIC
X	22245570	X_22245570_SNP [dm3] X_22843734_SNP [dm6]	A	T	8.842e^-5	0.301	INTRON fog & 1 other
2L	1177535	2L_1177535_SNP [dm3] 2L_1177535_SNP [dm6]	A	G	8.904e^-5	0.303	UTR_3_PRIME CG4887 UPSTREAM CG4896 DOWNSTREAM CG4887	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20517888	2R_20517888_SNP [dm3] 2R_24630365_SNP [dm6]	G	A	8.920e^-5	0.303	UPSTREAM Cyp9c1 DOWNSTREAM CR43787 INTRON CG13594
3L	1091744	3L_1091744_SNP [dm3] 3L_1091744_SNP [dm6]	A	G	8.961e^-5	0.304	INTRON bab1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	5461116	3L_5461116_SNP [dm3] 3L_5468016_SNP [dm6]	A	C	9.032e^-5	0.306	INTERGENIC
2L	4791214	2L_4791214_SNP [dm3] 2L_4791214_SNP [dm6]	C	T	9.096e^-5	0.307	INTRON CG15630
X	18793554	X_18793554_SNP [dm3] X_18899521_SNP [dm6]	C	A	9.108e^-5	0.307	UPSTREAM CG7378 INTERGENIC
3R	14287655	3R_14287655_INS [dm3] 3R_18461933_INS [dm6]	A	ATATAG	9.120e^-5	0.307	INTRON fru
3L	4697143	3L_4697143_SNP [dm3] 3L_4697143_SNP [dm6]	A	C	9.218e^-5	0.309	UPSTREAM CG13713 INTRON RhoGEF64C	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	18534191	2R_18534191_SNP [dm3] 2R_22646686_SNP [dm6]	C	T	9.230e^-5	0.309	UTR_3_PRIME CG30195 UPSTREAM CG2852 DOWNSTREAM CG34446	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	18017299	X_18017299_SNP [dm3] X_18123266_SNP [dm6]	G	A	9.261e^-5	0.31	DOWNSTREAM CR45606 INTERGENIC
3L	15870106	3L_15870106_SNP [dm3] 3L_15877006_SNP [dm6]	T	A	9.287e^-5	0.31	UPSTREAM CR44051 INTRON pHCl
2L	10131036	2L_10131036_SNP [dm3] 2L_10131036_SNP [dm6]	C	G	9.304e^-5	0.31	INTRON CG44153	insulator Insulator_Class_II.mE01
3L	11671422	3L_11671422_SNP [dm3] 3L_11678322_SNP [dm6]	C	T	9.372e^-5	0.311	INTRON CG32085
2R	10366966	2R_10366966_SNP [dm3] 2R_14479461_SNP [dm6]	A	G	9.420e^-5	0.311	INTERGENIC
2R	15208076	2R_15208076_SNP [dm3] 2R_19320571_SNP [dm6]	A	C	9.467e^-5	0.311	INTRON Rgk1
2R	19309000	2R_19309000_SNP [dm3] 2R_23421477_SNP [dm6]	T	A	9.484e^-5	0.311	DOWNSTREAM CG9815 INTERGENIC
2L	14249748	2L_14249748_SNP [dm3] 2L_14249748_SNP [dm6]	C	T	9.485e^-5	0.311	INTERGENIC
2L	7771804	2L_7771804_INS [dm3] 2L_7771804_INS [dm6]	T	TT	9.497e^-5	0.311	INTRON CG7191	TF binding site BDTNP1_TFBS_twi
X	11394667	X_11394667_SNP [dm3] X_11500634_SNP [dm6]	A	G	9.500e^-5	0.311	INTRON Drak
X	11394674	X_11394674_SNP [dm3] X_11500641_SNP [dm6]	G	A	9.500e^-5	0.311	INTRON Drak
3L	4426812	3L_4426812_SNP [dm3] 3L_4426812_SNP [dm6]	A	T	9.538e^-5	0.311	DOWNSTREAM CG15020 INTERGENIC
2L	3951851	2L_3951851_SNP [dm3] 2L_3951851_SNP [dm6]	A	C	9.583e^-5	0.311	INTRON fred
3L	15875443	3L_15875443_SNP [dm3] 3L_15882343_SNP [dm6]	A	C	9.589e^-5	0.311	INTRON pHCl
X	22252600	X_22252600_SNP [dm3] X_22850764_SNP [dm6]	G	A	9.600e^-5	0.311	INTRON fog & 1 other
2R	11484470	2R_11484470_SNP [dm3] 2R_15596965_SNP [dm6]	G	T	9.605e^-5	0.311	INTERGENIC
X	3940243	X_3940243_SNP [dm3] X_4046210_SNP [dm6]	T	A	9.618e^-5	0.311	INTERGENIC
2R	6994591	2R_6994591_SNP [dm3] 2R_11107086_SNP [dm6]	T	G	9.630e^-5	0.311	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	18728223	2R_18728223_SNP [dm3] 2R_22840700_SNP [dm6]	C	T	9.636e^-5	0.311	UPSTREAM CG9826 INTERGENIC	TF binding site mE1_TFBS_cad
2L	20964233	2L_20964233_SNP [dm3] 2L_20964233_SNP [dm6]	T	A	9.652e^-5	0.311	INTERGENIC
X	17290060	X_17290060_SNP [dm3] X_17396027_SNP [dm6]	C	A	9.672e^-5	0.311	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	17290073	X_17290073_SNP [dm3] X_17396040_SNP [dm6]	T	A	9.672e^-5	0.311	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	17290140	X_17290140_SNP [dm3] X_17396107_SNP [dm6]	C	T	9.672e^-5	0.311	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10631667	2L_10631667_SNP [dm3] 2L_10631667_SNP [dm6]	G	T	9.698e^-5	0.311	UPSTREAM CG7329 INTRON CG7329
2R	19636262	2R_19636262_DEL [dm3] 2R_23748739_DEL [dm6]	GGCGTGG	G	9.701e^-5	0.311	DOWNSTREAM CG13560 & 1 other INTERGENIC
X	3815425	X_3815425_INS [dm3] X_3921392_INS [dm6]	C	AGA	9.727e^-5	0.311	INTRON CG42541
3L	5444292	3L_5444292_SNP [dm3] 3L_5451192_SNP [dm6]	C	G	9.809e^-5	0.313	INTERGENIC
2L	14767502	2L_14767502_SNP [dm3] 2L_14767502_SNP [dm6]	T	C	9.824e^-5	0.313	DOWNSTREAM CG4701 INTERGENIC
2L	2289285	2L_2289285_SNP [dm3] 2L_2289285_SNP [dm6]	G	T	9.838e^-5	0.313	UTR_5_PRIME CG17237 DOWNSTREAM robl22E
X	22237814	X_22237814_SNP [dm3] X_22835978_SNP [dm6]	C	A	9.841e^-5	0.313	INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4826588	2L_4826588_SNP [dm3] 2L_4826588_SNP [dm6]	C	G	9.874e^-5	0.313	INTRON CG15628	TF binding site mE1_TFBS_cad
X	22241071	X_22241071_DEL [dm3] X_22839235_DEL [dm6]	ATTGAGA	A	9.880e^-5	0.313	INTRON fog & 1 other
2L	20962852	2L_20962852_SNP [dm3] 2L_20962852_SNP [dm6]	T	C	9.892e^-5	0.313	INTERGENIC
2L	5636150	2L_5636150_SNP [dm3] 2L_5636150_SNP [dm6]	C	T	9.911e^-5	0.313	INTRON CG31646
2L	5122618	2L_5122618_SNP [dm3] 2L_5122618_SNP [dm6]	T	A	9.913e^-5	0.313	INTRON Msp300	TF binding site mE1_TFBS_inv
2L	15499960	2L_15499960_SNP [dm3] 2L_15499960_SNP [dm6]	C	T	9.959e^-5	0.313	INTRON lace	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	20440120	2L_20440120_SNP [dm3] 2L_20440120_SNP [dm6]	T	C	9.994e^-5	0.313	INTRON CG31688	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3815429	X_3815429_DEL [dm3] X_3921396_DEL [dm6]	GTCTTTCCACGTCCTCGTCG...	G	9.999e^-5	0.313	INTRON CG42541
2L	20872924	2L_20872924_SNP [dm3] 2L_20872924_SNP [dm6]	G	A	1.000e^-4	0.313	UTR_3_PRIME sky & 1 other DOWNSTREAM sky
2L	9020782	2L_9020782_SNP [dm3] 2L_9020782_SNP [dm6]	G	T	1.003e^-4	0.313	INTERGENIC
2L	8098984	2L_8098984_SNP [dm3] 2L_8098984_SNP [dm6]	C	T	1.006e^-4	0.313	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	19698861	3L_19698861_SNP [dm3] 3L_19705761_SNP [dm6]	A	T	1.007e^-4	0.313	INTRON serp
3L	5372208	3L_5372208_SNP [dm3] 3L_5379108_SNP [dm6]	T	A	1.009e^-4	0.313	DOWNSTREAM CR45743 INTRON Ir64a
2R	6843180	2R_6843180_SNP [dm3] 2R_10955675_SNP [dm6]	C	G	1.009e^-4	0.313	INTERGENIC
X	12820264	X_12820264_SNP [dm3] X_12926231_SNP [dm6]	G	T	1.011e^-4	0.314	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	5148988	3R_5148988_SNP [dm3] 3R_9323266_SNP [dm6]	C	T	1.021e^-4	0.314	DOWNSTREAM HP1e INTRON CG8861
2R	13048212	2R_13048212_SNP [dm3] 2R_17160707_SNP [dm6]	A	G	1.022e^-4	0.314	NON_SYNONYMOUS_CODING CG30457
3L	10915397	3L_10915397_SNP [dm3] 3L_10922297_SNP [dm6]	A	C	1.022e^-4	0.314	INTERGENIC
3L	16666928	3L_16666928_SNP [dm3] 3L_16673828_SNP [dm6]	C	A	1.024e^-4	0.314	UPSTREAM CG13032 & 1 other INTERGENIC	regulatory region REDfly_CRMs
2L	19648532	2L_19648532_SNP [dm3] 2L_19648532_SNP [dm6]	T	C	1.025e^-4	0.314	INTRON Lar
2L	14607369	2L_14607369_SNP [dm3] 2L_14607369_SNP [dm6]	G	A	1.025e^-4	0.314	INTRON osp
2L	10076624	2L_10076624_SNP [dm3] 2L_10076624_SNP [dm6]	T	A	1.034e^-4	0.314	INTRON CG44153
2L	4600797	2L_4600797_SNP [dm3] 2L_4600797_SNP [dm6]	T	G	1.034e^-4	0.314	INTRON dp
3L	4688096	3L_4688096_SNP [dm3] 3L_4688096_SNP [dm6]	C	T	1.034e^-4	0.314	SYNONYMOUS_CODING CG7514 UPSTREAM axo DOWNSTREAM CG18418	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4688416	3L_4688416_SNP [dm3] 3L_4688416_SNP [dm6]	C	T	1.034e^-4	0.314	NON_SYNONYMOUS_CODING CG7514 DOWNSTREAM CG18418	TF binding site mE1_TFBS_cad
3L	4696720	3L_4696720_SNP [dm3] 3L_4696720_SNP [dm6]	T	A	1.034e^-4	0.314	UPSTREAM CG13713 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	4697267	3L_4697267_SNP [dm3] 3L_4697267_SNP [dm6]	A	G	1.034e^-4	0.314	UPSTREAM CG13713 INTRON RhoGEF64C	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	2646887	3L_2646887_SNP [dm3] 3L_2646887_SNP [dm6]	A	T	1.038e^-4	0.315	UTR_3_PRIME CG1143 DOWNSTREAM CG1143
3L	16675062	3L_16675062_SNP [dm3] 3L_16681962_SNP [dm6]	C	T	1.039e^-4	0.315	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_twi
2L	8098939	2L_8098939_SNP [dm3] 2L_8098939_SNP [dm6]	T	C	1.045e^-4	0.316	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	16674891	3L_16674891_SNP [dm3] 3L_16681791_SNP [dm6]	G	A	1.050e^-4	0.317	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_twi
3L	891789	3L_891789_SNP [dm3] 3L_891789_SNP [dm6]	T	G	1.052e^-4	0.317	DOWNSTREAM snoRNA:CG32479-a INTRON CG32479	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10036216	2L_10036216_SNP [dm3] 2L_10036216_SNP [dm6]	G	T	1.055e^-4	0.317	INTRON obst-B
3L	16674962	3L_16674962_DEL [dm3] 3L_16681862_DEL [dm6]	GGAATG	G	1.056e^-4	0.317	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_twi
2R	13047297	2R_13047297_SNP [dm3] 2R_17159792_SNP [dm6]	G	T	1.058e^-4	0.317	UPSTREAM CG30458 DOWNSTREAM CG30457 INTERGENIC
3L	3648096	3L_3648096_SNP [dm3] 3L_3648096_SNP [dm6]	A	T	1.062e^-4	0.318	INTRON dar1
3R	13919189	3R_13919189_DEL [dm3] 3R_18093467_DEL [dm6]	GTATT	CC	1.063e^-4	0.318	INTRON sr
3L	18273329	3L_18273329_SNP [dm3] 3L_18280229_SNP [dm6]	T	A	1.066e^-4	0.318	INTERGENIC	TF binding site mE1_TFBS_Ubx
2R	17376428	2R_17376428_SNP [dm3] 2R_21488923_SNP [dm6]	C	A	1.067e^-4	0.318	INTRON Fkbp14
3R	18462197	3R_18462197_SNP [dm3] 3R_22636475_SNP [dm6]	T	C	1.072e^-4	0.318	UPSTREAM loco INTRON loco	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1664197	2L_1664197_SNP [dm3] 2L_1664197_SNP [dm6]	G	C	1.073e^-4	0.318	INTRON chinmo
2L	4237499	2L_4237499_SNP [dm3] 2L_4237499_SNP [dm6]	T	A	1.074e^-4	0.318	INTERGENIC
2L	14607574	2L_14607574_SNP [dm3] 2L_14607574_SNP [dm6]	G	C	1.075e^-4	0.318	INTRON osp
3L	17049964	3L_17049964_SNP [dm3] 3L_17056864_SNP [dm6]	T	C	1.077e^-4	0.318	INTRON CG7724	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	15207208	2R_15207208_SNP [dm3] 2R_19319703_SNP [dm6]	G	A	1.080e^-4	0.318	INTRON Rgk1
2L	3266816	2L_3266816_SNP [dm3] 2L_3266816_SNP [dm6]	A	G	1.082e^-4	0.318	INTERGENIC
2R	8980523	2R_8980523_SNP [dm3] 2R_13093018_SNP [dm6]	T	G	1.083e^-4	0.318	INTERGENIC
2L	20959262	2L_20959262_SNP [dm3] 2L_20959262_SNP [dm6]	A	T	1.085e^-4	0.318	INTERGENIC
3L	4159967	3L_4159967_SNP [dm3] 3L_4159967_SNP [dm6]	G	T	1.087e^-4	0.318	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr
3L	16672904	3L_16672904_INS [dm3] 3L_16679804_INS [dm6]	G	GTTGCTG	1.087e^-4	0.318	CODON_INSERTION Lasp UTR_5_PRIME CG43954 INTRON Lasp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10254289	2R_10254289_SNP [dm3] 2R_14366784_SNP [dm6]	C	T	1.089e^-4	0.318	UPSTREAM CG34442 DOWNSTREAM CG34184 INTERGENIC
2R	10254338	2R_10254338_SNP [dm3] 2R_14366833_SNP [dm6]	T	A	1.089e^-4	0.318	UTR_5_PRIME CG34442 DOWNSTREAM CG34184
2L	2832248	2L_2832248_SNP [dm3] 2L_2832248_SNP [dm6]	G	C	1.099e^-4	0.318	INTERGENIC
2L	2832140	2L_2832140_SNP [dm3] 2L_2832140_SNP [dm6]	A	T	1.099e^-4	0.318	INTERGENIC
3R	7681945	3R_7681945_SNP [dm3] 3R_11856223_SNP [dm6]	C	T	1.100e^-4	0.318	INTRON CG6959	TF binding site mE1_TFBS_cad
3L	3368553	3L_3368553_SNP [dm3] 3L_3368553_SNP [dm6]	G	T	1.100e^-4	0.318	DOWNSTREAM kst INTERGENIC
3L	5416736	3L_5416736_SNP [dm3] 3L_5423636_SNP [dm6]	A	G	1.102e^-4	0.318	UPSTREAM CG34391 INTERGENIC
2L	12350795	2L_12350795_SNP [dm3] 2L_12350795_SNP [dm6]	A	C	1.103e^-4	0.318	INTRON bru-2
3L	10819006	3L_10819006_SNP [dm3] 3L_10825906_SNP [dm6]	A	T	1.104e^-4	0.318	DOWNSTREAM CR45246 INTERGENIC
3L	3637685	3L_3637685_SNP [dm3] 3L_3637685_SNP [dm6]	T	C	1.104e^-4	0.318	INTRON dar1
2L	16438073	2L_16438073_SNP [dm3] 2L_16438073_SNP [dm6]	A	C	1.109e^-4	0.318	INTRON CG5888
X	18013818	X_18013818_SNP [dm3] X_18119785_SNP [dm6]	G	A	1.110e^-4	0.318	DOWNSTREAM CR45605 INTERGENIC
3L	16662999	3L_16662999_DEL [dm3] 3L_16669899_DEL [dm6]	AA	A	1.111e^-4	0.318	DOWNSTREAM CR45241 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7677183	3R_7677183_SNP [dm3] 3R_11851461_SNP [dm6]	G	A	1.113e^-4	0.318	INTRON CG6959	TF binding site mE1_TFBS_Trl
3L	3473997	3L_3473997_SNP [dm3] 3L_3473997_SNP [dm6]	T	A	1.113e^-4	0.318	INTRON CG42324
2L	10528078	2L_10528078_SNP [dm3] 2L_10528078_SNP [dm6]	A	T	1.114e^-4	0.318	INTRON Lip4	TF binding site BDTNP1_TFBS_dl
2L	2735028	2L_2735028_SNP [dm3] 2L_2735028_SNP [dm6]	C	G	1.116e^-4	0.318	UPSTREAM CG31689 INTRON CG31689
3L	3686902	3L_3686902_SNP [dm3] 3L_3686902_SNP [dm6]	T	C	1.116e^-4	0.318	INTERGENIC
2L	9999144	2L_9999144_SNP [dm3] 2L_9999144_SNP [dm6]	A	T	1.121e^-4	0.319	NON_SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_sens
X	3812810	X_3812810_SNP [dm3] X_3918777_SNP [dm6]	G	C	1.124e^-4	0.319	INTRON CG42541
2L	3266552	2L_3266552_SNP [dm3] 2L_3266552_SNP [dm6]	G	C	1.133e^-4	0.32	UPSTREAM CR45706 INTERGENIC
3R	7089455	3R_7089455_SNP [dm3] 3R_11263733_SNP [dm6]	C	G	1.133e^-4	0.32	INTERGENIC
2R	6660002	2R_6660002_SNP [dm3] 2R_10772497_SNP [dm6]	G	A	1.136e^-4	0.32	INTRON CG33144	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14179581	3R_14179581_SNP [dm3] 3R_18353859_SNP [dm6]	T	C	1.137e^-4	0.32	NON_SYNONYMOUS_CODING CG15803	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4648609	3L_4648609_SNP [dm3] 3L_4648609_SNP [dm6]	G	C	1.137e^-4	0.32	UTR_5_PRIME CG32238 INTRON axo	TF binding site BDTNP1_TFBS_prd
3L	4648656	3L_4648656_SNP [dm3] 3L_4648656_SNP [dm6]	C	T	1.137e^-4	0.32	START_GAINED CG32238 UTR_5_PRIME CG32238 INTRON axo	TF binding site BDTNP1_TFBS_prd
3L	5692596	3L_5692596_SNP [dm3] 3L_5699496_SNP [dm6]	T	G	1.137e^-4	0.32	INTRON sif	TF binding site mE1_TFBS_chinmo
2R	14128839	2R_14128839_SNP [dm3] 2R_18241334_SNP [dm6]	G	T	1.141e^-4	0.32	INTERGENIC
3R	18219642	3R_18219642_SNP [dm3] 3R_22393920_SNP [dm6]	T	C	1.146e^-4	0.32	INTRON CG13857
X	22247582	X_22247582_SNP [dm3] X_22845746_SNP [dm6]	G	A	1.149e^-4	0.32	INTRON fog & 1 other
2L	5636166	2L_5636166_SNP [dm3] 2L_5636166_SNP [dm6]	A	G	1.150e^-4	0.32	INTRON CG31646
3R	7673865	3R_7673865_SNP [dm3] 3R_11848143_SNP [dm6]	T	A	1.153e^-4	0.32	INTRON CG6959	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14375064	2L_14375064_SNP [dm3] 2L_14375064_SNP [dm6]	G	C	1.153e^-4	0.32	INTERGENIC
3L	2425489	3L_2425489_SNP [dm3] 3L_2425489_SNP [dm6]	T	G	1.153e^-4	0.32	INTRON CG45186	TF binding site mE1_TFBS_bab1
2L	6568205	2L_6568205_SNP [dm3] 2L_6568205_SNP [dm6]	C	T	1.156e^-4	0.32	DOWNSTREAM CG11319 INTERGENIC
X	18014448	X_18014448_SNP [dm3] X_18120415_SNP [dm6]	A	G	1.156e^-4	0.32	DOWNSTREAM CR45605 INTERGENIC
3L	5344796	3L_5344796_SNP [dm3] 3L_5351696_SNP [dm6]	G	A	1.163e^-4	0.32	UPSTREAM lama INTRON lama
3L	5345471	3L_5345471_SNP [dm3] 3L_5352371_SNP [dm6]	C	A	1.163e^-4	0.32	UPSTREAM lama INTRON lama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3L	16675296	3L_16675296_SNP [dm3] 3L_16682196_SNP [dm6]	C	G	1.164e^-4	0.32	INTRON Lasp & 1 other
3R	7681939	3R_7681939_SNP [dm3] 3R_11856217_SNP [dm6]	A	T	1.166e^-4	0.32	INTRON CG6959	TF binding site mE1_TFBS_cad
3L	14027744	3L_14027744_SNP [dm3] 3L_14034644_SNP [dm6]	T	A	1.167e^-4	0.32	UTR_3_PRIME CG6650 UPSTREAM CG6661 DOWNSTREAM CG6650 EXON pncr014:3L
3L	3808034	3L_3808034_SNP [dm3] 3L_3808034_SNP [dm6]	G	A	1.169e^-4	0.32	SYNONYMOUS_CODING IntS10	TF binding site mE1_TFBS_sens
2L	2734988	2L_2734988_SNP [dm3] 2L_2734988_SNP [dm6]	A	G	1.169e^-4	0.32	UPSTREAM CG31689 INTRON CG31689
2L	14767379	2L_14767379_SNP [dm3] 2L_14767379_SNP [dm6]	C	T	1.173e^-4	0.32	DOWNSTREAM CG4701 INTERGENIC
X	6517628	X_6517628_SNP [dm3] X_6623595_SNP [dm6]	T	A	1.176e^-4	0.32	INTRON pigs
2R	10715588	2R_10715588_SNP [dm3] 2R_14828083_SNP [dm6]	A	T	1.180e^-4	0.32	INTERGENIC
3L	4016168	3L_4016168_SNP [dm3] 3L_4016168_SNP [dm6]	G	A	1.183e^-4	0.32	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3L	9526504	3L_9526504_SNP [dm3] 3L_9533404_SNP [dm6]	A	G	1.184e^-4	0.32	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4270029	3L_4270029_SNP [dm3] 3L_4270029_SNP [dm6]	A	T	1.189e^-4	0.32	INTRON CG1273	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	4270635	3L_4270635_SNP [dm3] 3L_4270635_SNP [dm6]	T	C	1.189e^-4	0.32	INTRON CG1273	TF binding site mE1_TFBS_cad
3L	4270641	3L_4270641_SNP [dm3] 3L_4270641_SNP [dm6]	A	T	1.189e^-4	0.32	INTRON CG1273	TF binding site mE1_TFBS_cad
3L	4270647	3L_4270647_SNP [dm3] 3L_4270647_SNP [dm6]	T	A	1.189e^-4	0.32	INTRON CG1273	TF binding site mE1_TFBS_cad
3L	4270668	3L_4270668_SNP [dm3] 3L_4270668_SNP [dm6]	T	C	1.189e^-4	0.32	INTRON CG1273	TF binding site mE1_TFBS_cad
3L	4270671	3L_4270671_SNP [dm3] 3L_4270671_SNP [dm6]	A	G	1.189e^-4	0.32	INTRON CG1273	TF binding site mE1_TFBS_cad
3L	4270672	3L_4270672_SNP [dm3] 3L_4270672_SNP [dm6]	G	A	1.189e^-4	0.32	INTRON CG1273	TF binding site mE1_TFBS_cad
3L	7501123	3L_7501123_SNP [dm3] 3L_7508023_SNP [dm6]	C	T	1.193e^-4	0.32	INTERGENIC
2R	17376426	2R_17376426_INS [dm3] 2R_21488921_INS [dm6]	A	AGGTGTGTGTGTAGTTTATG...	1.193e^-4	0.32	INTRON Fkbp14
2L	6206510	2L_6206510_SNP [dm3] 2L_6206510_SNP [dm6]	C	T	1.196e^-4	0.32	INTRON CG34380	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14861531	2R_14861531_SNP [dm3] 2R_18974026_SNP [dm6]	T	C	1.198e^-4	0.32	NON_SYNONYMOUS_CODING Topors	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4270023	3L_4270023_SNP [dm3] 3L_4270023_SNP [dm6]	T	G	1.203e^-4	0.32	INTRON CG1273	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	13024479	2R_13024479_SNP [dm3] 2R_17136974_SNP [dm6]	A	C	1.203e^-4	0.32	UPSTREAM CG11395 DOWNSTREAM CR44391 & 1 other INTERGENIC
X	18016894	X_18016894_SNP [dm3] X_18122861_SNP [dm6]	C	T	1.204e^-4	0.32	EXON CR45606
2L	16752195	2L_16752195_SNP [dm3] 2L_16752195_SNP [dm6]	T	C	1.208e^-4	0.32	UTR_3_PRIME CG17912 DOWNSTREAM CG17912
2L	16799516	2L_16799516_SNP [dm3] 2L_16799516_SNP [dm6]	G	A	1.208e^-4	0.32	UPSTREAM Ugt36Bc INTRON Ugt36Bc
X	12820845	X_12820845_SNP [dm3] X_12926812_SNP [dm6]	C	T	1.209e^-4	0.32	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24603503	3R_24603503_SNP [dm3] 3R_28777781_SNP [dm6]	G	T	1.214e^-4	0.32	EXON CR44952
2L	10528069	2L_10528069_SNP [dm3] 2L_10528069_SNP [dm6]	A	C	1.214e^-4	0.32	INTRON Lip4	TF binding site BDTNP1_TFBS_dl
2L	17778779	2L_17778779_DEL [dm3] 2L_17778779_DEL [dm6]	CGG	C	1.218e^-4	0.32	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
3L	6169065	3L_6169065_SNP [dm3] 3L_6175965_SNP [dm6]	T	G	1.220e^-4	0.32	SYNONYMOUS_CODING CG7376	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19339332	2R_19339332_SNP [dm3] 2R_23451809_SNP [dm6]	A	T	1.221e^-4	0.32	INTRON CG43795
2L	20959263	2L_20959263_SNP [dm3] 2L_20959263_SNP [dm6]	G	C	1.221e^-4	0.32	INTERGENIC
2L	20959264	2L_20959264_INS [dm3] 2L_20959264_INS [dm6]	A	AA	1.221e^-4	0.32	INTERGENIC
2R	5544187	2R_5544187_SNP [dm3] 2R_9656682_SNP [dm6]	T	C	1.222e^-4	0.32	INTRON Mmp2
2R	17235521	2R_17235521_SNP [dm3] 2R_21348016_SNP [dm6]	C	T	1.223e^-4	0.32	UPSTREAM CG9822 DOWNSTREAM CG17974 INTERGENIC
3R	10248803	3R_10248803_SNP [dm3] 3R_14423081_SNP [dm6]	C	A	1.223e^-4	0.32	UPSTREAM CR44176 INTRON cv-c
2R	6094242	2R_6094242_SNP [dm3] 2R_10206737_SNP [dm6]	G	A	1.224e^-4	0.32	UTR_3_PRIME Hr46 & 1 other
3L	7997522	3L_7997522_SNP [dm3] 3L_8004422_SNP [dm6]	T	C	1.225e^-4	0.32	INTRON nmo
3R	18454816	3R_18454816_SNP [dm3] 3R_22629094_SNP [dm6]	C	A	1.226e^-4	0.32	UPSTREAM CR43474 INTRON loco EXON CR43475	regulatory region REDfly_CRMs
3L	455148	3L_455148_SNP [dm3] 3L_455148_SNP [dm6]	G	A	1.227e^-4	0.32	INTRON klar
2L	2293360	2L_2293360_SNP [dm3] 2L_2293360_SNP [dm6]	G	C	1.233e^-4	0.321	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	15045910	2R_15045910_SNP [dm3] 2R_19158405_SNP [dm6]	T	C	1.241e^-4	0.322	INTRON ena	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6888905	2L_6888905_SNP [dm3] 2L_6888905_SNP [dm6]	A	T	1.244e^-4	0.323	INTRON Nlg2
X	22243805	X_22243805_SNP [dm3] X_22841969_SNP [dm6]	G	A	1.246e^-4	0.323	INTRON fog & 1 other	transposable element FlyBase
2L	10417154	2L_10417154_SNP [dm3] 2L_10417154_SNP [dm6]	T	A	1.251e^-4	0.324	SPLICE_SITE_REGION Klp31E INTRON Klp31E	TF binding site BDTNP1_TFBS_twi
3L	4998935	3L_4998935_SNP [dm3] 3L_4998935_SNP [dm6]	A	G	1.263e^-4	0.326	INTRON Con	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	4999177	3L_4999177_SNP [dm3] 3L_4999177_SNP [dm6]	A	C	1.263e^-4	0.326	INTRON Con	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	2737262	3L_2737262_SNP [dm3] 3L_2737262_SNP [dm6]	C	G	1.264e^-4	0.326	INTRON Mrtf
X	22242915	X_22242915_SNP [dm3] X_22841079_SNP [dm6]	C	G	1.266e^-4	0.326	INTRON fog & 1 other
3L	10181398	3L_10181398_SNP [dm3] 3L_10188298_SNP [dm6]	A	G	1.270e^-4	0.326	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12766836	2L_12766836_DEL [dm3] 2L_12766836_DEL [dm6]	CC	G	1.275e^-4	0.327	INTERGENIC
X	7993756	X_7993756_SNP [dm3] X_8099723_SNP [dm6]	A	G	1.276e^-4	0.327	UTR_5_PRIME CG2258 INTRON CG2258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_Trl
2L	20963026	2L_20963026_SNP [dm3] 2L_20963026_SNP [dm6]	A	T	1.277e^-4	0.327	INTERGENIC
3R	16902125	3R_16902125_SNP [dm3] 3R_21076403_SNP [dm6]	T	C	1.279e^-4	0.327	DOWNSTREAM HHEX INTRON dmrt93B	TF binding site mE1_TFBS_chinmo
2R	15209334	2R_15209334_SNP [dm3] 2R_19321829_SNP [dm6]	C	T	1.284e^-4	0.328	INTRON Rgk1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	22180406	X_22180406_SNP [dm3] X_22778570_SNP [dm6]	C	T	1.286e^-4	0.328	INTRON CR44997
2L	4194834	2L_4194834_SNP [dm3] 2L_4194834_SNP [dm6]	C	T	1.295e^-4	0.33	SYNONYMOUS_CODING CG3714
3R	24202691	3R_24202691_SNP [dm3] 3R_28376969_SNP [dm6]	G	A	1.302e^-4	0.33	INTERGENIC
2R	15834918	2R_15834918_SNP [dm3] 2R_19947413_SNP [dm6]	T	G	1.304e^-4	0.33	NON_SYNONYMOUS_CODING CG30447 UPSTREAM CG42691
2R	10254237	2R_10254237_SNP [dm3] 2R_14366732_SNP [dm6]	G	T	1.304e^-4	0.33	UPSTREAM CG34442 DOWNSTREAM CG34184 INTERGENIC
2R	10252514	2R_10252514_SNP [dm3] 2R_14365009_SNP [dm6]	C	T	1.305e^-4	0.33	SYNONYMOUS_CODING Tfb1 UPSTREAM CG34184	TF binding site mE1_TFBS_sens
2R	13234937	2R_13234937_SNP [dm3] 2R_17347432_SNP [dm6]	G	A	1.310e^-4	0.331	INTRON mbl
2R	575957	2R_575957_SNP [dm3] 2R_4688452_SNP [dm6]	A	C	1.316e^-4	0.332	INTERGENIC
3L	18573125	3L_18573125_SNP [dm3] 3L_18580025_SNP [dm6]	G	T	1.318e^-4	0.332	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	22239275	X_22239275_SNP [dm3] X_22837439_SNP [dm6]	A	C	1.319e^-4	0.332	INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	6995460	2R_6995460_SNP [dm3] 2R_11107955_SNP [dm6]	G	C	1.325e^-4	0.333	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	5419636	3L_5419636_SNP [dm3] 3L_5426536_SNP [dm6]	A	T	1.330e^-4	0.334	INTRON CG34391	TF binding site BDTNP1_TFBS_twi
X	17390045	X_17390045_SNP [dm3] X_17496012_SNP [dm6]	C	T	1.334e^-4	0.334	UPSTREAM CR44692 INTRON CG43658	TF binding site mE1_TFBS_Kr
X	18017301	X_18017301_SNP [dm3] X_18123268_SNP [dm6]	A	T	1.335e^-4	0.334	DOWNSTREAM CR45606 INTERGENIC
3R	13981306	3R_13981306_SNP [dm3] 3R_18155584_SNP [dm6]	C	T	1.339e^-4	0.335	INTERGENIC
2L	20351462	2L_20351462_SNP [dm3] 2L_20351462_SNP [dm6]	G	A	1.345e^-4	0.336	INTRON RtGEF
X	21150249	X_21150249_SNP [dm3] X_21279222_SNP [dm6]	G	T	1.348e^-4	0.336	INTRON CG32521
X	19932504	X_19932504_SNP [dm3] X_20038471_SNP [dm6]	C	T	1.349e^-4	0.336	INTRON Dop2R
3R	7096295	3R_7096295_DEL [dm3] 3R_11270573_DEL [dm6]	CC	C	1.353e^-4	0.336	EXON CR31386	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13581836	2R_13581836_SNP [dm3] 2R_17694331_SNP [dm6]	C	T	1.357e^-4	0.336	INTRON swi2
2L	2832224	2L_2832224_SNP [dm3] 2L_2832224_SNP [dm6]	T	A	1.362e^-4	0.336	INTERGENIC
2L	10154278	2L_10154278_SNP [dm3] 2L_10154278_SNP [dm6]	C	T	1.362e^-4	0.336	SYNONYMOUS_CODING CG4839 INTRON CG44153
2L	12595815	2L_12595815_DEL [dm3] 2L_12595815_DEL [dm6]	TT	T	1.364e^-4	0.336	INTRON nub
2L	1972852	2L_1972852_SNP [dm3] 2L_1972852_SNP [dm6]	C	T	1.365e^-4	0.336	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2L	2965886	2L_2965886_SNP [dm3] 2L_2965886_SNP [dm6]	A	G	1.365e^-4	0.336	UTR_3_PRIME Rbp9
2R	19309026	2R_19309026_SNP [dm3] 2R_23421503_SNP [dm6]	T	G	1.367e^-4	0.336	DOWNSTREAM CG9815 INTERGENIC
2L	11490450	2L_11490450_SNP [dm3] 2L_11490450_SNP [dm6]	T	G	1.367e^-4	0.336	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	19799340	3L_19799340_SNP [dm3] 3L_19806240_SNP [dm6]	G	T	1.370e^-4	0.336	START_GAINED CG15881 UTR_5_PRIME CG15881 UPSTREAM CG34116 & 1 other DOWNSTREAM CG14104 INTRON CG15881	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_ttk
3L	19799341	3L_19799341_SNP [dm3] 3L_19806241_SNP [dm6]	G	T	1.370e^-4	0.336	UTR_5_PRIME CG15881 UPSTREAM CG34116 & 1 other DOWNSTREAM CG14104 INTRON CG15881	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_ttk
2L	15065123	2L_15065123_SNP [dm3] 2L_15065123_SNP [dm6]	A	C	1.376e^-4	0.337	INTRON vas & 1 other
2L	14607392	2L_14607392_SNP [dm3] 2L_14607392_SNP [dm6]	G	A	1.378e^-4	0.337	INTRON osp
X	22188536	X_22188536_SNP [dm3] X_22786700_SNP [dm6]	G	T	1.384e^-4	0.338	INTRON CR44997
2L	4194409	2L_4194409_SNP [dm3] 2L_4194409_SNP [dm6]	G	A	1.399e^-4	0.342	INTRON CG3714
2L	1938270	2L_1938270_SNP [dm3] 2L_1938270_SNP [dm6]	G	A	1.403e^-4	0.342	UPSTREAM tRNA:G3:22BCa INTRON CG7337	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	20406742	X_20406742_SNP [dm3] X_20535715_SNP [dm6]	A	T	1.403e^-4	0.342	INTERGENIC
2L	20317865	2L_20317865_SNP [dm3] 2L_20317865_SNP [dm6]	A	G	1.411e^-4	0.343	UPSTREAM CR43606 INTRON spir
X	18015565	X_18015565_INS [dm3] X_18121532_INS [dm6]	T	TGCTGAT	1.417e^-4	0.343	UPSTREAM CR45606 & 1 other INTERGENIC
3R	14287672	3R_14287672_SNP [dm3] 3R_18461950_SNP [dm6]	C	T	1.418e^-4	0.343	INTRON fru
3R	14287685	3R_14287685_SNP [dm3] 3R_18461963_SNP [dm6]	G	C	1.418e^-4	0.343	INTRON fru
2R	6995906	2R_6995906_SNP [dm3] 2R_11108401_SNP [dm6]	A	T	1.422e^-4	0.343	INTRON luna
X	22241445	X_22241445_SNP [dm3] X_22839609_SNP [dm6]	A	T	1.427e^-4	0.343	INTRON fog & 1 other
3L	3808189	3L_3808189_SNP [dm3] 3L_3808189_SNP [dm6]	A	G	1.428e^-4	0.343	SYNONYMOUS_CODING IntS10 DOWNSTREAM CG32262
3R	5262204	3R_5262204_SNP [dm3] 3R_9436482_SNP [dm6]	C	T	1.429e^-4	0.343	UPSTREAM ps INTRON ps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16052775	2R_16052775_SNP [dm3] 2R_20165270_SNP [dm6]	T	A	1.431e^-4	0.343	INTERGENIC
2R	16052782	2R_16052782_SNP [dm3] 2R_20165277_SNP [dm6]	A	G	1.431e^-4	0.343	INTERGENIC
2L	6888912	2L_6888912_DEL [dm3] 2L_6888912_DEL [dm6]	AAAGA	A	1.431e^-4	0.343	INTRON Nlg2
3L	5692222	3L_5692222_SNP [dm3] 3L_5699122_SNP [dm6]	G	A	1.433e^-4	0.343	INTRON sif	TF binding site mE1_TFBS_chinmo
3L	5692242	3L_5692242_SNP [dm3] 3L_5699142_SNP [dm6]	A	G	1.433e^-4	0.343	INTRON sif	TF binding site mE1_TFBS_chinmo
2R	12506168	2R_12506168_SNP [dm3] 2R_16618663_SNP [dm6]	G	C	1.436e^-4	0.343	INTRON CG5065
3L	4357626	3L_4357626_SNP [dm3] 3L_4357626_SNP [dm6]	A	G	1.437e^-4	0.343	INTRON Cip4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	21761651	2L_21761651_SNP [dm3] 2L_21761651_SNP [dm6]	T	G	1.438e^-4	0.343	DOWNSTREAM CG1416 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5695566	2L_5695566_SNP [dm3] 2L_5695566_SNP [dm6]	A	G	1.443e^-4	0.344	INTERGENIC
X	7995298	X_7995298_SNP [dm3] X_8101265_SNP [dm6]	A	C	1.447e^-4	0.344	UTR_5_PRIME CG2258 DOWNSTREAM Gclc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7417328	2L_7417328_SNP [dm3] 2L_7417328_SNP [dm6]	A	C	1.452e^-4	0.345	INTRON chm	TF binding site BDTNP1_TFBS_dl
2L	14908595	2L_14908595_SNP [dm3] 2L_14908595_SNP [dm6]	G	A	1.457e^-4	0.345	SYNONYMOUS_CODING CG42313	TF binding site mE1_TFBS_chinmo
2R	19181660	2R_19181660_SNP [dm3] 2R_23294137_SNP [dm6]	T	G	1.458e^-4	0.345	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9020784	2L_9020784_SNP [dm3] 2L_9020784_SNP [dm6]	C	A	1.460e^-4	0.345	INTERGENIC
3L	2737244	3L_2737244_SNP [dm3] 3L_2737244_SNP [dm6]	G	A	1.462e^-4	0.345	INTRON Mrtf
3R	10092221	3R_10092221_SNP [dm3] 3R_14266499_SNP [dm6]	C	A	1.466e^-4	0.345	SYNONYMOUS_CODING trx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5470948	2L_5470948_SNP [dm3] 2L_5470948_SNP [dm6]	A	T	1.467e^-4	0.345	INTERGENIC
3R	25846547	3R_25846547_SNP [dm3] 3R_30020825_SNP [dm6]	C	T	1.468e^-4	0.345	INTRON Mgat2	TF binding site BDTNP1_TFBS_dl
2R	19183459	2R_19183459_SNP [dm3] 2R_23295936_SNP [dm6]	T	A	1.469e^-4	0.345	INTERGENIC
3R	7674069	3R_7674069_SNP [dm3] 3R_11848347_SNP [dm6]	G	A	1.472e^-4	0.345	INTRON CG6959	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16631800	3L_16631800_SNP [dm3] 3L_16638700_SNP [dm6]	T	C	1.472e^-4	0.345	INTRON Abl
2L	2421724	2L_2421724_SNP [dm3] 2L_2421724_SNP [dm6]	G	A	1.474e^-4	0.345	NON_SYNONYMOUS_CODING CG9886	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20489852	2L_20489852_SNP [dm3] 2L_20489852_SNP [dm6]	T	A	1.475e^-4	0.345	EXON CR45359	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12173728	3L_12173728_SNP [dm3] 3L_12180628_SNP [dm6]	T	C	1.481e^-4	0.346	INTRON CAH2
3L	16869093	3L_16869093_SNP [dm3] 3L_16875993_SNP [dm6]	C	T	1.482e^-4	0.346	INTRON Lmpt	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	24204228	3R_24204228_SNP [dm3] 3R_28378506_SNP [dm6]	T	G	1.487e^-4	0.346	INTERGENIC
3L	3650964	3L_3650964_SNP [dm3] 3L_3650964_SNP [dm6]	A	C	1.491e^-4	0.346	INTRON dar1
2L	2531104	2L_2531104_SNP [dm3] 2L_2531104_SNP [dm6]	T	C	1.491e^-4	0.346	INTERGENIC
2R	15859507	2R_15859507_SNP [dm3] 2R_19972002_SNP [dm6]	G	A	1.492e^-4	0.346	INTERGENIC
3L	3591587	3L_3591587_SNP [dm3] 3L_3591587_SNP [dm6]	C	T	1.496e^-4	0.347	INTRON Eip63E
2L	2693336	2L_2693336_SNP [dm3] 2L_2693336_SNP [dm6]	A	G	1.500e^-4	0.348	INTRON CG31690	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11291331	2L_11291331_SNP [dm3] 2L_11291331_SNP [dm6]	G	T	1.512e^-4	0.349	UPSTREAM CR43409 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11721338	3L_11721338_SNP [dm3] 3L_11728238_SNP [dm6]	C	G	1.512e^-4	0.349	UPSTREAM CG32088 DOWNSTREAM Bmcp INTERGENIC
3L	11721344	3L_11721344_SNP [dm3] 3L_11728244_SNP [dm6]	G	C	1.512e^-4	0.349	UPSTREAM CG32088 DOWNSTREAM Bmcp INTERGENIC
3L	2664071	3L_2664071_SNP [dm3] 3L_2664071_SNP [dm6]	G	T	1.518e^-4	0.35	DOWNSTREAM CG33234 INTRON Fife
3L	1039689	3L_1039689_SNP [dm3] 3L_1039689_SNP [dm6]	C	A	1.519e^-4	0.35	INTRON bab1	TF binding site mE1_TFBS_cad
2L	14383741	2L_14383741_SNP [dm3] 2L_14383741_SNP [dm6]	C	T	1.521e^-4	0.35	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9020656	2L_9020656_SNP [dm3] 2L_9020656_SNP [dm6]	C	T	1.525e^-4	0.35	INTERGENIC
3L	3891736	3L_3891736_SNP [dm3] 3L_3891736_SNP [dm6]	A	C	1.528e^-4	0.35	UPSTREAM Fie EXON CR45422
2R	18535024	2R_18535024_SNP [dm3] 2R_22647519_SNP [dm6]	C	A	1.528e^-4	0.35	UTR_3_PRIME CG34446 UPSTREAM CG30195 DOWNSTREAM CG34445
2R	8656857	2R_8656857_SNP [dm3] 2R_12769352_SNP [dm6]	G	C	1.533e^-4	0.35	INTERGENIC	regulatory region REDfly_CRMs
2L	1039938	2L_1039938_SNP [dm3] 2L_1039938_SNP [dm6]	C	T	1.535e^-4	0.35	INTRON IA-2	TF binding site mE1_TFBS_chinmo
2L	4870311	2L_4870311_SNP [dm3] 2L_4870311_SNP [dm6]	T	C	1.537e^-4	0.35	INTRON pog
X	16410115	X_16410115_SNP [dm3] X_16516082_SNP [dm6]	G	T	1.538e^-4	0.35	INTRON para	TF binding site mE1_TFBS_HSA
X	17290059	X_17290059_SNP [dm3] X_17396026_SNP [dm6]	C	T	1.540e^-4	0.35	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2398652	3L_2398652_SNP [dm3] 3L_2398652_SNP [dm6]	G	C	1.542e^-4	0.35	INTRON CG45186
2R	13049125	2R_13049125_SNP [dm3] 2R_17161620_SNP [dm6]	T	C	1.548e^-4	0.35	UPSTREAM CG30457 INTERGENIC
2R	12443558	2R_12443558_INS [dm3] 2R_16556053_INS [dm6]	T	TT	1.548e^-4	0.35	INTRON Syn2
X	22242287	X_22242287_SNP [dm3] X_22840451_SNP [dm6]	G	A	1.550e^-4	0.35	INTRON fog & 1 other
X	18014647	X_18014647_SNP [dm3] X_18120614_SNP [dm6]	G	C	1.552e^-4	0.35	DOWNSTREAM CR45605 EXON CR45605
2R	19340254	2R_19340254_SNP [dm3] 2R_23452731_SNP [dm6]	C	T	1.555e^-4	0.35	INTRON CG43795
3L	3650550	3L_3650550_SNP [dm3] 3L_3650550_SNP [dm6]	T	G	1.556e^-4	0.35	INTRON dar1
2L	10151843	2L_10151843_SNP [dm3] 2L_10151843_SNP [dm6]	T	A	1.556e^-4	0.35	INTRON CG44153 & 1 other
3L	8685386	3L_8685386_SNP [dm3] 3L_8692286_SNP [dm6]	T	C	1.556e^-4	0.35	UPSTREAM CR44526 INTERGENIC	TF binding site mE1_TFBS_cad
2L	4682668	2L_4682668_SNP [dm3] 2L_4682668_SNP [dm6]	A	C	1.558e^-4	0.35	UPSTREAM CG11929 DOWNSTREAM Bsg25A INTERGENIC
2L	3212520	2L_3212520_SNP [dm3] 2L_3212520_SNP [dm6]	G	T	1.560e^-4	0.35	INTERGENIC
2R	13121294	2R_13121294_SNP [dm3] 2R_17233789_SNP [dm6]	A	C	1.567e^-4	0.35	INTRON mbl
X	3815322	X_3815322_SNP [dm3] X_3921289_SNP [dm6]	T	C	1.567e^-4	0.35	INTRON CG42541
3L	5382601	3L_5382601_SNP [dm3] 3L_5389501_SNP [dm6]	G	T	1.570e^-4	0.35	INTERGENIC
2L	3249694	2L_3249694_SNP [dm3] 2L_3249694_SNP [dm6]	G	T	1.571e^-4	0.35	INTERGENIC
3R	14287616	3R_14287616_SNP [dm3] 3R_18461894_SNP [dm6]	T	A	1.575e^-4	0.35	INTRON fru
2L	21029742	2L_21029742_SNP [dm3] 2L_21029742_SNP [dm6]	A	G	1.578e^-4	0.35	INTRON CG42238
X	18017974	X_18017974_SNP [dm3] X_18123941_SNP [dm6]	G	T	1.578e^-4	0.35	UPSTREAM mir-969 DOWNSTREAM CG32553 INTERGENIC
3L	2159168	3L_2159168_SNP [dm3] 3L_2159168_SNP [dm6]	C	A	1.579e^-4	0.35	INTRON CG15822	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	3518029	X_3518029_SNP [dm3] X_3623996_SNP [dm6]	T	A	1.581e^-4	0.35	INTRON AstA-R1
X	22238633	X_22238633_SNP [dm3] X_22836797_SNP [dm6]	T	G	1.584e^-4	0.35	UPSTREAM fog INTRON fog & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14764321	2L_14764321_SNP [dm3] 2L_14764321_SNP [dm6]	G	A	1.585e^-4	0.35	DOWNSTREAM CSN1a INTERGENIC
3R	22901227	3R_22901227_SNP [dm3] 3R_27075505_SNP [dm6]	G	A	1.590e^-4	0.35	UPSTREAM CG14257 INTERGENIC
3R	21093610	3R_21093610_SNP [dm3] 3R_25267888_SNP [dm6]	A	G	1.591e^-4	0.35	UPSTREAM CR43310 & 1 other DOWNSTREAM RIOK2 INTRON CR45214
3L	4025597	3L_4025597_SNP [dm3] 3L_4025597_SNP [dm6]	T	C	1.593e^-4	0.35	UTR_5_PRIME CG11594 UPSTREAM CG11594 INTRON CG11594
2L	4194426	2L_4194426_SNP [dm3] 2L_4194426_SNP [dm6]	A	G	1.594e^-4	0.35	INTRON CG3714
2L	4221079	2L_4221079_SNP [dm3] 2L_4221079_SNP [dm6]	C	A	1.594e^-4	0.35	INTRON ft	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4073262	2L_4073262_SNP [dm3] 2L_4073262_SNP [dm6]	G	T	1.599e^-4	0.35	INTRON ed
3L	6164889	3L_6164889_SNP [dm3] 3L_6171789_SNP [dm6]	A	T	1.599e^-4	0.35	SYNONYMOUS_CODING CG10289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	10256294	2R_10256294_SNP [dm3] 2R_14368789_SNP [dm6]	C	T	1.600e^-4	0.35	SYNONYMOUS_CODING CG34443 UPSTREAM CG34444 DOWNSTREAM CG34442
2R	14617661	2R_14617661_SNP [dm3] 2R_18730156_SNP [dm6]	A	G	1.603e^-4	0.35	SYNONYMOUS_CODING List INTRON Hs3st-A
2L	13236397	2L_13236397_DEL [dm3] 2L_13236397_DEL [dm6]	TT	T	1.605e^-4	0.35	UPSTREAM CG5867 INTERGENIC
2L	7771817	2L_7771817_SNP [dm3] 2L_7771817_SNP [dm6]	A	G	1.606e^-4	0.35	INTRON CG7191	TF binding site BDTNP1_TFBS_twi
2L	20464515	2L_20464515_SNP [dm3] 2L_20464515_SNP [dm6]	C	A	1.607e^-4	0.35	EXON CR44980	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	1177527	2L_1177527_SNP [dm3] 2L_1177527_SNP [dm6]	C	A	1.610e^-4	0.35	UTR_3_PRIME CG4887 UPSTREAM CG4896 DOWNSTREAM CG4887	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	22232373	X_22232373_SNP [dm3] X_22830537_SNP [dm6]	T	C	1.614e^-4	0.35	INTRON fog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
X	22232408	X_22232408_SNP [dm3] X_22830572_SNP [dm6]	G	A	1.614e^-4	0.35	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3R	9868203	3R_9868203_SNP [dm3] 3R_14042481_SNP [dm6]	G	C	1.617e^-4	0.35	INTERGENIC
2R	1555392	2R_1555392_SNP [dm3] 2R_5667887_SNP [dm6]	G	A	1.617e^-4	0.35	UPSTREAM CG8245 INTERGENIC
X	18793547	X_18793547_SNP [dm3] X_18899514_SNP [dm6]	T	C	1.620e^-4	0.35	UPSTREAM CG7378 INTERGENIC
X	12268063	X_12268063_SNP [dm3] X_12374030_SNP [dm6]	C	T	1.620e^-4	0.35	SYNONYMOUS_CODING CG2577
3L	1537126	3L_1537126_SNP [dm3] 3L_1537126_SNP [dm6]	A	T	1.621e^-4	0.35	UPSTREAM CG7852 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13851831	2R_13851831_SNP [dm3] 2R_17964326_SNP [dm6]	T	A	1.621e^-4	0.35	INTERGENIC
3R	7674894	3R_7674894_SNP [dm3] 3R_11849172_SNP [dm6]	G	A	1.622e^-4	0.35	INTRON CG6959
X	6674543	X_6674543_DEL [dm3] X_6780510_DEL [dm6]	ATGCCCCA	A	1.626e^-4	0.35	UPSTREAM shf DOWNSTREAM C3G INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	21268906	X_21268906_SNP [dm3] X_21397879_SNP [dm6]	C	G	1.626e^-4	0.35	UPSTREAM lcs INTERGENIC
3R	14154028	3R_14154028_SNP [dm3] 3R_18328306_SNP [dm6]	G	T	1.629e^-4	0.35	INTRON CG31235
3R	24130310	3R_24130310_SNP [dm3] 3R_28304588_SNP [dm6]	T	C	1.629e^-4	0.35	START_GAINED CG12516 UTR_5_PRIME CG12516
3L	4344880	3L_4344880_SNP [dm3] 3L_4344880_SNP [dm6]	T	G	1.636e^-4	0.351	UPSTREAM CR45156 INTRON Cip4
2R	18981897	2R_18981897_SNP [dm3] 2R_23094374_SNP [dm6]	C	T	1.636e^-4	0.351	UPSTREAM CG9876 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	19183380	2R_19183380_SNP [dm3] 2R_23295857_SNP [dm6]	T	A	1.639e^-4	0.351	INTERGENIC
2R	19183564	2R_19183564_SNP [dm3] 2R_23296041_SNP [dm6]	G	A	1.639e^-4	0.351	INTERGENIC
2L	5734397	2L_5734397_SNP [dm3] 2L_5734397_SNP [dm6]	C	G	1.640e^-4	0.351	INTRON CG11030 & 1 other
2R	18369801	2R_18369801_SNP [dm3] 2R_22482296_SNP [dm6]	C	T	1.654e^-4	0.353	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10932343	3L_10932343_SNP [dm3] 3L_10939243_SNP [dm6]	G	A	1.655e^-4	0.353	INTERGENIC
2L	9020664	2L_9020664_SNP [dm3] 2L_9020664_SNP [dm6]	A	T	1.658e^-4	0.353	INTERGENIC
X	8471071	X_8471071_SNP [dm3] X_8577038_SNP [dm6]	C	A	1.669e^-4	0.355	INTRON CG12065
2L	1874091	2L_1874091_SNP [dm3] 2L_1874091_SNP [dm6]	A	T	1.672e^-4	0.355	DOWNSTREAM CR44075 INTRON CG31663
3L	13412154	3L_13412154_DEL [dm3] 3L_13419054_DEL [dm6]	TAT	T	1.673e^-4	0.355	INTRON CG32121	TF binding site mE1_TFBS_chinmo
2L	10931643	2L_10931643_SNP [dm3] 2L_10931643_SNP [dm6]	T	A	1.673e^-4	0.355	INTRON dpr2
2L	10131052	2L_10131052_SNP [dm3] 2L_10131052_SNP [dm6]	T	G	1.675e^-4	0.355	INTRON CG44153
2L	8573939	2L_8573939_SNP [dm3] 2L_8573939_SNP [dm6]	T	A	1.676e^-4	0.355	INTRON Sema-1a
X	22239767	X_22239767_SNP [dm3] X_22837931_SNP [dm6]	A	G	1.692e^-4	0.358	INTRON fog & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	21266595	X_21266595_SNP [dm3] X_21395568_SNP [dm6]	G	A	1.698e^-4	0.358	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5697472	3L_5697472_SNP [dm3] 3L_5704372_SNP [dm6]	A	C	1.699e^-4	0.358	INTRON sif
2R	14861931	2R_14861931_SNP [dm3] 2R_18974426_SNP [dm6]	C	T	1.710e^-4	0.359	SYNONYMOUS_CODING Topors	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	597933	2R_597933_SNP [dm3] 2R_4710428_SNP [dm6]	A	G	1.715e^-4	0.359	INTRON Nipped-B	transposable element FlyBase
3L	4016177	3L_4016177_SNP [dm3] 3L_4016177_SNP [dm6]	A	G	1.720e^-4	0.359	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	25460827	3R_25460827_SNP [dm3] 3R_29635105_SNP [dm6]	C	T	1.723e^-4	0.359	INTRON Dop1R2
3L	3643769	3L_3643769_SNP [dm3] 3L_3643769_SNP [dm6]	G	A	1.729e^-4	0.359	INTRON dar1
3L	20028292	3L_20028292_SNP [dm3] 3L_20035192_SNP [dm6]	C	G	1.730e^-4	0.359	INTERGENIC
3L	5397603	3L_5397603_SNP [dm3] 3L_5404503_SNP [dm6]	G	T	1.731e^-4	0.359	INTERGENIC
3L	5397663	3L_5397663_SNP [dm3] 3L_5404563_SNP [dm6]	C	T	1.731e^-4	0.359	INTERGENIC
2L	5734399	2L_5734399_SNP [dm3] 2L_5734399_SNP [dm6]	C	A	1.733e^-4	0.359	SPLICE_SITE_REGION CG11147 INTRON CG11030 & 1 other
3R	24136925	3R_24136925_SNP [dm3] 3R_28311203_SNP [dm6]	T	A	1.736e^-4	0.359	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	24060098	3R_24060098_SNP [dm3] 3R_28234376_SNP [dm6]	T	C	1.736e^-4	0.359	INTRON CG34354	TF binding site mE1_TFBS_chinmo
3R	24060103	3R_24060103_SNP [dm3] 3R_28234381_SNP [dm6]	G	A	1.736e^-4	0.359	INTRON CG34354	TF binding site mE1_TFBS_chinmo
X	20568890	X_20568890_SNP [dm3] X_20697863_SNP [dm6]	T	A	1.738e^-4	0.359	DOWNSTREAM run INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17370929	2R_17370929_SNP [dm3] 2R_21483424_SNP [dm6]	T	G	1.739e^-4	0.359	NON_SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17238365	2R_17238365_SNP [dm3] 2R_21350860_SNP [dm6]	G	A	1.740e^-4	0.359	UPSTREAM CG17974 INTERGENIC
2L	21725536	2L_21725536_SNP [dm3] 2L_21725536_SNP [dm6]	A	G	1.740e^-4	0.359	INTRON CG31619	transposable element FlyBase
2R	13022372	2R_13022372_SNP [dm3] 2R_17134867_SNP [dm6]	T	G	1.744e^-4	0.359	UTR_3_PRIME CG11400 UPSTREAM CR44391 DOWNSTREAM CG11400
2R	13022532	2R_13022532_SNP [dm3] 2R_17135027_SNP [dm6]	T	A	1.744e^-4	0.359	UTR_3_PRIME CG11400 UPSTREAM CR44391 DOWNSTREAM CG11400
X	3940237	X_3940237_SNP [dm3] X_4046204_SNP [dm6]	G	A	1.745e^-4	0.359	INTERGENIC
2L	3221490	2L_3221490_SNP [dm3] 2L_3221490_SNP [dm6]	G	A	1.749e^-4	0.359	INTERGENIC
3L	11721320	3L_11721320_SNP [dm3] 3L_11728220_SNP [dm6]	G	A	1.750e^-4	0.359	UPSTREAM CG32088 DOWNSTREAM Bmcp INTERGENIC
2L	3286296	2L_3286296_SNP [dm3] 2L_3286296_SNP [dm6]	C	T	1.752e^-4	0.359	INTERGENIC
2L	13097961	2L_13097961_SNP [dm3] 2L_13097961_SNP [dm6]	A	G	1.754e^-4	0.359	DOWNSTREAM CR45447 INTERGENIC
2L	2835982	2L_2835982_DEL [dm3] 2L_2835982_DEL [dm6]	AGTGG	A	1.756e^-4	0.359	DOWNSTREAM CG3119 INTRON CG3119
3L	2424746	3L_2424746_SNP [dm3] 3L_2424746_SNP [dm6]	C	T	1.757e^-4	0.359	INTRON CG45186
2L	19648533	2L_19648533_SNP [dm3] 2L_19648533_SNP [dm6]	G	T	1.758e^-4	0.359	INTRON Lar
2L	4016700	2L_4016700_SNP [dm3] 2L_4016700_SNP [dm6]	C	T	1.758e^-4	0.359	INTERGENIC
2R	14860082	2R_14860082_SNP [dm3] 2R_18972577_SNP [dm6]	T	C	1.759e^-4	0.359	UPSTREAM Topors & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	12674671	X_12674671_SNP [dm3] X_12780638_SNP [dm6]	C	A	1.761e^-4	0.359	INTRON CG32647
3L	2123938	3L_2123938_SNP [dm3] 3L_2123938_SNP [dm6]	A	G	1.762e^-4	0.359	INTRON zormin
2L	4338528	2L_4338528_SNP [dm3] 2L_4338528_SNP [dm6]	T	C	1.770e^-4	0.359	UPSTREAM Atet INTRON Atet
3R	25849620	3R_25849620_SNP [dm3] 3R_30023898_SNP [dm6]	T	C	1.772e^-4	0.359	INTRON Axn
3R	25849640	3R_25849640_SNP [dm3] 3R_30023918_SNP [dm6]	G	A	1.772e^-4	0.359	INTRON Axn
3R	25849645	3R_25849645_SNP [dm3] 3R_30023923_SNP [dm6]	T	G	1.772e^-4	0.359	INTRON Axn
2L	10421803	2L_10421803_SNP [dm3] 2L_10421803_SNP [dm6]	A	G	1.773e^-4	0.359	SYNONYMOUS_CODING pie	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24602314	3R_24602314_SNP [dm3] 3R_28776592_SNP [dm6]	G	C	1.773e^-4	0.359	UPSTREAM CR44952 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	13976843	3R_13976843_SNP [dm3] 3R_18151121_SNP [dm6]	G	T	1.782e^-4	0.361	UPSTREAM CG14316 INTERGENIC
2R	1555310	2R_1555310_SNP [dm3] 2R_5667805_SNP [dm6]	T	A	1.785e^-4	0.361	UPSTREAM CG8245 INTERGENIC
2R	10467503	2R_10467503_SNP [dm3] 2R_14579998_SNP [dm6]	A	C	1.790e^-4	0.362	INTRON ttv
3L	11434442	3L_11434442_SNP [dm3] 3L_11441342_SNP [dm6]	A	T	1.796e^-4	0.362	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	6535886	X_6535886_SNP [dm3] X_6641853_SNP [dm6]	G	T	1.799e^-4	0.362	INTRON pigs
2L	20598804	2L_20598804_SNP [dm3] 2L_20598804_SNP [dm6]	A	G	1.799e^-4	0.362	INTRON CR44909
X	5606905	X_5606905_SNP [dm3] X_5712872_SNP [dm6]	A	G	1.801e^-4	0.362	INTRON CG33080
2L	15023563	2L_15023563_SNP [dm3] 2L_15023563_SNP [dm6]	C	A	1.809e^-4	0.363	INTRON GABA-B-R1
3L	3648103	3L_3648103_SNP [dm3] 3L_3648103_SNP [dm6]	T	G	1.809e^-4	0.363	INTRON dar1
X	3940257	X_3940257_DEL [dm3] X_4046224_DEL [dm6]	AAAAAAAAAAA...	T	1.812e^-4	0.363	INTERGENIC
2R	16657578	2R_16657578_SNP [dm3] 2R_20770073_SNP [dm6]	C	A	1.813e^-4	0.363	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6164811	3L_6164811_SNP [dm3] 3L_6171711_SNP [dm6]	G	T	1.817e^-4	0.363	SYNONYMOUS_CODING CG10289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	12840012	2R_12840012_SNP [dm3] 2R_16952507_SNP [dm6]	C	T	1.817e^-4	0.363	UTR_3_PRIME CG34191 UPSTREAM mute INTRON mute	TF binding site mE1_TFBS_sens
3R	14153920	3R_14153920_SNP [dm3] 3R_18328198_SNP [dm6]	C	T	1.823e^-4	0.363	INTRON CG31235
3R	14153921	3R_14153921_SNP [dm3] 3R_18328199_SNP [dm6]	C	A	1.823e^-4	0.363	INTRON CG31235
3R	14154038	3R_14154038_SNP [dm3] 3R_18328316_SNP [dm6]	T	A	1.825e^-4	0.363	INTRON CG31235
3R	7674958	3R_7674958_SNP [dm3] 3R_11849236_SNP [dm6]	C	T	1.826e^-4	0.363	INTRON CG6959
3L	5462110	3L_5462110_SNP [dm3] 3L_5469010_SNP [dm6]	C	T	1.834e^-4	0.364	INTERGENIC
2R	13022448	2R_13022448_SNP [dm3] 2R_17134943_SNP [dm6]	A	T	1.840e^-4	0.364	UTR_3_PRIME CG11400 UPSTREAM CR44391 DOWNSTREAM CG11400
2R	13108697	2R_13108697_SNP [dm3] 2R_17221192_SNP [dm6]	T	C	1.840e^-4	0.364	INTRON mbl	TF binding site BDTNP1_TFBS_twi
2R	13108715	2R_13108715_SNP [dm3] 2R_17221210_SNP [dm6]	A	G	1.840e^-4	0.364	INTRON mbl	TF binding site BDTNP1_TFBS_twi
4	216261	4_216261_SNP [dm3] 4_195635_SNP [dm6]	C	G	1.841e^-4	0.364	EXON CR44441
2L	3930304	2L_3930304_SNP [dm3] 2L_3930304_SNP [dm6]	A	C	1.842e^-4	0.364	INTRON fred
3L	6917192	3L_6917192_SNP [dm3] 3L_6924092_SNP [dm6]	C	T	1.845e^-4	0.364	INTERGENIC
X	5863248	X_5863248_SNP [dm3] X_5969215_SNP [dm6]	C	A	1.855e^-4	0.365	INTRON Grip
2R	13022614	2R_13022614_SNP [dm3] 2R_17135109_SNP [dm6]	G	T	1.857e^-4	0.365	UTR_3_PRIME CG11400 UPSTREAM CR44391 DOWNSTREAM CG11400
2L	3766428	2L_3766428_SNP [dm3] 2L_3766428_SNP [dm6]	C	T	1.860e^-4	0.365	NON_SYNONYMOUS_CODING CG43707 UTR_5_PRIME CG43707 DOWNSTREAM CG43703 INTRON CG43707	TF binding site mE1_TFBS_Trl
2R	16061989	2R_16061989_DEL [dm3] 2R_20174484_DEL [dm6]	ATGTA	A	1.863e^-4	0.365	INTERGENIC
3R	21004673	3R_21004673_SNP [dm3] 3R_25178951_SNP [dm6]	T	C	1.864e^-4	0.365	INTRON lobo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14162445	3R_14162445_SNP [dm3] 3R_18336723_SNP [dm6]	A	T	1.865e^-4	0.365	INTRON CG15803
X	9025416	X_9025416_SNP [dm3] X_9131383_SNP [dm6]	T	C	1.866e^-4	0.365	INTRON fend	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	22254990	X_22254990_DEL [dm3] X_22853154_DEL [dm6]	TT	T	1.866e^-4	0.365	INTRON fog & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11976850	2R_11976850_SNP [dm3] 2R_16089345_SNP [dm6]	T	A	1.867e^-4	0.365	INTRON Dg
2L	10891264	2L_10891264_SNP [dm3] 2L_10891264_SNP [dm6]	A	T	1.869e^-4	0.365	INTERGENIC
2L	9990318	2L_9990318_SNP [dm3] 2L_9990318_SNP [dm6]	G	T	1.870e^-4	0.365	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	5705023	2R_5705023_SNP [dm3] 2R_9817518_SNP [dm6]	T	C	1.873e^-4	0.365	DOWNSTREAM lectin-46Cb INTRON CG1648 & 1 other
3R	9980773	3R_9980773_SNP [dm3] 3R_14155051_SNP [dm6]	G	T	1.875e^-4	0.365	NON_SYNONYMOUS_CODING CG31533 UPSTREAM CR44215
2R	13024152	2R_13024152_SNP [dm3] 2R_17136647_SNP [dm6]	A	G	1.890e^-4	0.368	SYNONYMOUS_CODING Gbp UPSTREAM CG11395 DOWNSTREAM CR44391	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12506164	2R_12506164_SNP [dm3] 2R_16618659_SNP [dm6]	G	T	1.890e^-4	0.368	INTRON CG5065
X	19923217	X_19923217_SNP [dm3] X_20029184_SNP [dm6]	T	A	1.900e^-4	0.368	INTRON Dop2R
3L	6164925	3L_6164925_SNP [dm3] 3L_6171825_SNP [dm6]	G	A	1.902e^-4	0.368	SYNONYMOUS_CODING CG10289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	2566478	X_2566478_SNP [dm3] X_2672445_SNP [dm6]	T	G	1.902e^-4	0.368	INTRON sgg
2R	10844373	2R_10844373_SNP [dm3] 2R_14956868_SNP [dm6]	T	C	1.904e^-4	0.368	INTRON aPKC
X	13021894	X_13021894_SNP [dm3] X_13127861_SNP [dm6]	C	A	1.906e^-4	0.368	DOWNSTREAM snmRNA:204 INTRON CG32638	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	12958247	2R_12958247_SNP [dm3] 2R_17070742_SNP [dm6]	C	T	1.906e^-4	0.368	INTRON CG30460	TF binding site mE1_TFBS_cad
2L	7763156	2L_7763156_SNP [dm3] 2L_7763156_SNP [dm6]	G	A	1.910e^-4	0.368	INTRON CG7196
2R	11440746	2R_11440746_SNP [dm3] 2R_15553241_SNP [dm6]	C	G	1.916e^-4	0.368	INTERGENIC
3R	19193232	3R_19193232_SNP [dm3] 3R_23367510_SNP [dm6]	T	C	1.920e^-4	0.368	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	21094319	3R_21094319_DEL [dm3] 3R_25268597_DEL [dm6]	ACTT	A	1.921e^-4	0.368	UPSTREAM CR13656 DOWNSTREAM RIOK2 & 1 other INTRON CR45214
3R	21094324	3R_21094324_DEL [dm3] 3R_25268602_DEL [dm6]	GGGAA	G	1.921e^-4	0.368	UPSTREAM CR13656 DOWNSTREAM RIOK2 & 1 other INTRON CR45214
2L	7650534	2L_7650534_SNP [dm3] 2L_7650534_SNP [dm6]	T	C	1.924e^-4	0.368	INTRON Slob
3L	4699386	3L_4699386_SNP [dm3] 3L_4699386_SNP [dm6]	G	C	1.925e^-4	0.368	INTRON RhoGEF64C
X	5606902	X_5606902_SNP [dm3] X_5712869_SNP [dm6]	T	C	1.925e^-4	0.368	INTRON CG33080
2L	5771323	2L_5771323_SNP [dm3] 2L_5771323_SNP [dm6]	G	A	1.926e^-4	0.368	DOWNSTREAM CR31912 INTRON CG9171 EXON CR31912	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2R	9804784	2R_9804784_SNP [dm3] 2R_13917279_SNP [dm6]	A	G	1.930e^-4	0.368	INTRON shot
3L	5066480	3L_5066480_INS [dm3] 3L_5066480_INS [dm6]	T	CA	1.931e^-4	0.368	INTRON Con
3L	16869072	3L_16869072_SNP [dm3] 3L_16875972_SNP [dm6]	A	C	1.931e^-4	0.368	INTRON Lmpt	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	3212528	2L_3212528_SNP [dm3] 2L_3212528_SNP [dm6]	A	G	1.935e^-4	0.369	INTERGENIC
3L	19330613	3L_19330613_SNP [dm3] 3L_19337513_SNP [dm6]	G	A	1.941e^-4	0.37	START_GAINED pip UTR_5_PRIME pip
2R	17975785	2R_17975785_SNP [dm3] 2R_22088280_SNP [dm6]	C	A	1.948e^-4	0.37	UPSTREAM CG13502 INTRON CG13502
2R	18421945	2R_18421945_SNP [dm3] 2R_22534440_SNP [dm6]	G	A	1.948e^-4	0.37	INTRON px
3L	2152278	3L_2152278_SNP [dm3] 3L_2152278_SNP [dm6]	T	G	1.955e^-4	0.371	UPSTREAM zormin DOWNSTREAM CG15822 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	5891696	2L_5891696_SNP [dm3] 2L_5891696_SNP [dm6]	A	T	1.958e^-4	0.371	DOWNSTREAM Acp26Ab INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	4284560	2L_4284560_SNP [dm3] 2L_4284560_SNP [dm6]	C	A	1.960e^-4	0.371	INTRON tutl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10736993	3L_10736993_SNP [dm3] 3L_10743893_SNP [dm6]	C	T	1.963e^-4	0.371	INTERGENIC
2L	5736672	2L_5736672_SNP [dm3] 2L_5736672_SNP [dm6]	A	G	1.970e^-4	0.372	NON_SYNONYMOUS_CODING CG11147 INTRON CG11030	TF binding site mE1_TFBS_chinmo
X	13768273	X_13768273_SNP [dm3] X_13874240_SNP [dm6]	G	T	1.970e^-4	0.372	INTRON mamo
3R	14287613	3R_14287613_SNP [dm3] 3R_18461891_SNP [dm6]	A	T	1.974e^-4	0.372	INTRON fru
2L	16757651	2L_16757651_SNP [dm3] 2L_16757651_SNP [dm6]	A	C	1.978e^-4	0.372	SYNONYMOUS_CODING yellow-b DOWNSTREAM ppk17
3R	7673357	3R_7673357_SNP [dm3] 3R_11847635_SNP [dm6]	A	G	1.979e^-4	0.372	INTRON CG6959	TF binding site mE1_TFBS_cad
X	3802763	X_3802763_SNP [dm3] X_3908730_SNP [dm6]	C	A	1.980e^-4	0.372	INTRON CG42541
2L	16447727	2L_16447727_SNP [dm3] 2L_16447727_SNP [dm6]	G	T	1.982e^-4	0.372	DOWNSTREAM Idgf1 INTRON CG5888 & 1 other	TF binding site mE1_TFBS_Trl
2L	20989794	2L_20989794_SNP [dm3] 2L_20989794_SNP [dm6]	A	C	1.982e^-4	0.372	INTRON CG42238	TF binding site BDTNP1_TFBS_twi
3L	4258317	3L_4258317_SNP [dm3] 3L_4258317_SNP [dm6]	T	C	1.984e^-4	0.372	INTRON CG15011	TF binding site mE1_TFBS_sens
3L	2487773	3L_2487773_SNP [dm3] 3L_2487773_SNP [dm6]	C	G	1.984e^-4	0.372	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11721318	3L_11721318_SNP [dm3] 3L_11728218_SNP [dm6]	G	A	1.990e^-4	0.372	UPSTREAM CG32088 DOWNSTREAM Bmcp INTERGENIC
2L	12799103	2L_12799103_SNP [dm3] 2L_12799103_SNP [dm6]	C	T	1.993e^-4	0.372	INTERGENIC
2R	12386422	2R_12386422_SNP [dm3] 2R_16498917_SNP [dm6]	G	C	1.993e^-4	0.372	SYNONYMOUS_CODING CG7813	TF binding site BDTNP1_TFBS_dl
3R	25332460	3R_25332460_SNP [dm3] 3R_29506738_SNP [dm6]	G	T	1.998e^-4	0.372	INTERGENIC
2L	9250949	2L_9250949_SNP [dm3] 2L_9250949_SNP [dm6]	T	C	1.999e^-4	0.372	SYNONYMOUS_CODING aust DOWNSTREAM CR43734 & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3819313	X_3819313_SNP [dm3] X_3925280_SNP [dm6]	A	T	2.001e^-4	0.372	INTRON CG42541
2R	14990766	2R_14990766_SNP [dm3] 2R_19103261_SNP [dm6]	T	G	2.002e^-4	0.372	INTRON 5-HT1A

By genomic position
Variant impact
Gene name

Microbiota_OTU082 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results