DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.229e^-12)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.01736

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	7.1905	0.0275

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

8392 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	5298399	2L_5298399_INS [dm3] 2L_5298399_INS [dm6]	A	AA	5.590e^-16	1.040e^-9	UPSTREAM CR45730 INTRON vri
3R	21608140	3R_21608140_SNP [dm3] 3R_25782418_SNP [dm6]	T	C	1.826e^-15	1.698e^-9	INTERGENIC
2R	4205960	2R_4205960_SNP [dm3] 2R_8318455_SNP [dm6]	A	G	2.495e^-14	1.547e^-8	INTERGENIC
X	21867866	X_21867866_SNP [dm3] X_22466030_SNP [dm6]	T	C	1.580e^-12	7.349e^-7	UPSTREAM CG14619 INTRON CG14619
X	12207510	X_12207510_SNP [dm3] X_12313477_SNP [dm6]	G	A	2.288e^-12	8.512e^-7	INTRON Ten-a
X	12207484	X_12207484_SNP [dm3] X_12313451_SNP [dm6]	G	T	3.941e^-12	1.084e^-6	INTRON Ten-a
3R	22626260	3R_22626260_SNP [dm3] 3R_26800538_SNP [dm6]	A	T	4.662e^-12	1.084e^-6	INTRON Tl
3R	22626282	3R_22626282_DEL [dm3] 3R_26800560_DEL [dm6]	CAACCC	GT	4.662e^-12	1.084e^-6	INTRON Tl
3R	15493540	3R_15493540_SNP [dm3] 3R_19667818_SNP [dm6]	G	T	6.735e^-12	1.392e^-6	INTRON CG7432
3L	15866056	3L_15866056_SNP [dm3] 3L_15872956_SNP [dm6]	A	T	9.400e^-12	1.697e^-6	INTRON pHCl
3L	15012944	3L_15012944_SNP [dm3] 3L_15019844_SNP [dm6]	A	G	1.003e^-11	1.697e^-6	INTRON Sytbeta
2L	6123609	2L_6123609_SNP [dm3] 2L_6123609_SNP [dm6]	C	T	1.393e^-11	2.160e^-6	UTR_3_PRIME stai
3L	14628116	3L_14628116_SNP [dm3] 3L_14635016_SNP [dm6]	C	T	2.515e^-11	3.554e^-6	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	13915897	3R_13915897_DEL [dm3] 3R_18090175_DEL [dm6]	TTCT	T	2.675e^-11	3.554e^-6	UPSTREAM sr INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10726566	X_10726566_SNP [dm3] X_10832533_SNP [dm6]	A	G	2.914e^-11	3.614e^-6	DOWNSTREAM sbr INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	6420123	2L_6420123_SNP [dm3] 2L_6420123_SNP [dm6]	T	C	3.380e^-11	3.729e^-6	SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8033741	3L_8033741_SNP [dm3] 3L_8040641_SNP [dm6]	G	C	3.408e^-11	3.729e^-6	INTRON nmo
2R	15942708	2R_15942708_SNP [dm3] 2R_20055203_SNP [dm6]	G	A	5.678e^-11	5.332e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	6325099	2L_6325099_SNP [dm3] 2L_6325099_SNP [dm6]	A	T	5.769e^-11	5.332e^-6	INTRON PDZ-GEF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	6325160	2L_6325160_SNP [dm3] 2L_6325160_SNP [dm6]	T	G	5.769e^-11	5.332e^-6	INTRON PDZ-GEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	7681769	2R_7681769_SNP [dm3] 2R_11794264_SNP [dm6]	G	C	6.018e^-11	5.332e^-6	INTRON ths	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	4014046	2L_4014046_SNP [dm3] 2L_4014046_SNP [dm6]	T	A	1.070e^-10	9.051e^-6	INTERGENIC
3L	15360876	3L_15360876_SNP [dm3] 3L_15367776_SNP [dm6]	A	T	2.043e^-10	1.652e^-5	INTERGENIC
3L	9510270	3L_9510270_DEL [dm3] 3L_9517170_DEL [dm6]	TT	A	2.554e^-10	1.883e^-5	INTRON CG33700
3R	21326483	3R_21326483_SNP [dm3] 3R_25500761_SNP [dm6]	C	T	2.631e^-10	1.883e^-5	INTERGENIC
3R	21326492	3R_21326492_SNP [dm3] 3R_25500770_SNP [dm6]	T	G	2.631e^-10	1.883e^-5	INTERGENIC
2L	2183666	2L_2183666_SNP [dm3] 2L_2183666_SNP [dm6]	T	C	3.159e^-10	2.162e^-5	EXON CR43751	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	21865027	X_21865027_SNP [dm3] X_22463191_SNP [dm6]	T	C	3.254e^-10	2.162e^-5	SYNONYMOUS_CODING CG14619 UTR_5_PRIME CG14619 INTRON CG14619	TF binding site mE1_TFBS_HSA
3L	2837492	3L_2837492_SNP [dm3] 3L_2837492_SNP [dm6]	G	A	3.863e^-10	2.474e^-5	INTRON CG43444
2L	19318279	2L_19318279_SNP [dm3] 2L_19318279_SNP [dm6]	A	T	3.990e^-10	2.474e^-5	INTERGENIC	TF binding site mE1_TFBS_cad
3R	16877950	3R_16877950_SNP [dm3] 3R_21052228_SNP [dm6]	G	A	4.327e^-10	2.597e^-5	NON_SYNONYMOUS_CODING Mvl DOWNSTREAM Mvl
3R	16885832	3R_16885832_SNP [dm3] 3R_21060110_SNP [dm6]	T	G	6.230e^-10	3.622e^-5	UTR_5_PRIME Mvl INTRON Mvl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	5376878	2L_5376878_SNP [dm3] 2L_5376878_SNP [dm6]	G	T	7.984e^-10	4.501e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6270408	2L_6270408_SNP [dm3] 2L_6270408_SNP [dm6]	T	A	8.917e^-10	4.637e^-5	UPSTREAM CR42735 INTRON Ddr
X	8277684	X_8277684_SNP [dm3] X_8383651_SNP [dm6]	G	A	8.973e^-10	4.637e^-5	INTERGENIC
X	8277685	X_8277685_SNP [dm3] X_8383652_SNP [dm6]	T	C	8.973e^-10	4.637e^-5	INTERGENIC
3L	4026537	3L_4026537_SNP [dm3] 3L_4026537_SNP [dm6]	C	T	9.301e^-10	4.677e^-5	UPSTREAM Gr64a & 1 other INTERGENIC
2L	3130433	2L_3130433_SNP [dm3] 2L_3130433_SNP [dm6]	T	C	1.030e^-9	5.008e^-5	DOWNSTREAM CG15403 INTRON toc
3L	18934788	3L_18934788_SNP [dm3] 3L_18941688_SNP [dm6]	A	T	1.050e^-9	5.008e^-5	INTRON CG32204
3L	16664595	3L_16664595_SNP [dm3] 3L_16671495_SNP [dm6]	T	C	1.106e^-9	5.145e^-5	UPSTREAM CR45241 DOWNSTREAM zetaCOP INTERGENIC	TF binding site mE1_TFBS_cad
2L	14971220	2L_14971220_DEL [dm3] 2L_14971220_DEL [dm6]	AA	A	1.286e^-9	5.837e^-5	INTRON CG42313
3R	15300939	3R_15300939_SNP [dm3] 3R_19475217_SNP [dm6]	C	T	1.472e^-9	6.518e^-5	INTRON Dys
2L	6324948	2L_6324948_SNP [dm3] 2L_6324948_SNP [dm6]	C	T	1.733e^-9	7.499e^-5	INTRON PDZ-GEF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	15300930	3R_15300930_SNP [dm3] 3R_19475208_SNP [dm6]	C	T	1.944e^-9	8.218e^-5	INTRON Dys
3L	18606809	3L_18606809_SNP [dm3] 3L_18613709_SNP [dm6]	G	A	2.114e^-9	8.739e^-5	NON_SYNONYMOUS_CODING CG32199 INTRON CG4174 & 1 other
2L	5907372	2L_5907372_SNP [dm3] 2L_5907372_SNP [dm6]	G	T	2.255e^-9	9.120e^-5	INTRON bchs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	21194456	3R_21194456_SNP [dm3] 3R_25368734_SNP [dm6]	T	G	2.454e^-9	9.714e^-5	INTRON Fur1
2L	5744474	2L_5744474_SNP [dm3] 2L_5744474_SNP [dm6]	C	T	2.522e^-9	9.775e^-5	INTRON CG11030
2R	15387655	2R_15387655_SNP [dm3] 2R_19500150_SNP [dm6]	G	A	2.740e^-9	1.028e^-4	SYNONYMOUS_CODING CG15120 DOWNSTREAM CG16926
3R	15031852	3R_15031852_SNP [dm3] 3R_19206130_SNP [dm6]	A	C	2.762e^-9	1.028e^-4	INTERGENIC
2L	12296072	2L_12296072_SNP [dm3] 2L_12296072_SNP [dm6]	G	C	2.927e^-9	1.068e^-4	INTRON aret
2R	15035159	2R_15035159_SNP [dm3] 2R_19147654_SNP [dm6]	C	T	3.000e^-9	1.071e^-4	INTRON ena	TF binding site mE1_TFBS_HSA
2L	6886825	2L_6886825_SNP [dm3] 2L_6886825_SNP [dm6]	T	C	3.134e^-9	1.071e^-4	INTRON Nlg2	TF binding site BDTNP1_TFBS_twi
3L	13206390	3L_13206390_INS [dm3] 3L_13213290_INS [dm6]	T	TTT	3.134e^-9	1.071e^-4	UPSTREAM tRNA:CR32127 DOWNSTREAM tRNA:CR32126 INTERGENIC	TF binding site mE1_TFBS_cad
2R	8565902	2R_8565902_SNP [dm3] 2R_12678397_SNP [dm6]	C	T	3.259e^-9	1.071e^-4	INTRON CG42708
3L	7322909	3L_7322909_SNP [dm3] 3L_7329809_SNP [dm6]	C	A	3.290e^-9	1.071e^-4	SYNONYMOUS_CODING mus312 UTR_3_PRIME CG42307 UPSTREAM CG8602 DOWNSTREAM CG42307	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9253442	2L_9253442_INS [dm3] 2L_9253442_INS [dm6]	G	GTATAGA	3.339e^-9	1.071e^-4	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	18235739	3L_18235739_SNP [dm3] 3L_18242639_SNP [dm6]	C	A	3.397e^-9	1.071e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18235743	3L_18235743_SNP [dm3] 3L_18242643_SNP [dm6]	T	G	3.397e^-9	1.071e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4206831	2R_4206831_SNP [dm3] 2R_8319326_SNP [dm6]	G	C	3.575e^-9	1.108e^-4	INTERGENIC
3L	15750623	3L_15750623_SNP [dm3] 3L_15757523_SNP [dm6]	C	A	4.289e^-9	1.294e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20648493	2R_20648493_SNP [dm3] 2R_24760970_SNP [dm6]	A	C	4.448e^-9	1.294e^-4	DOWNSTREAM spz6 INTRON CG3880	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	8566202	2R_8566202_SNP [dm3] 2R_12678697_SNP [dm6]	A	T	4.487e^-9	1.294e^-4	INTRON CG42708
3R	12903014	3R_12903014_SNP [dm3] 3R_17077292_SNP [dm6]	A	T	4.492e^-9	1.294e^-4	INTRON Keap1
3R	16321001	3R_16321001_SNP [dm3] 3R_20495279_SNP [dm6]	G	A	4.522e^-9	1.294e^-4	INTERGENIC
3L	689544	3L_689544_SNP [dm3] 3L_689544_SNP [dm6]	A	G	4.868e^-9	1.352e^-4	SYNONYMOUS_CODING CG32483 UPSTREAM RabX6	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	689571	3L_689571_SNP [dm3] 3L_689571_SNP [dm6]	C	T	4.868e^-9	1.352e^-4	SYNONYMOUS_CODING CG32483 UPSTREAM RabX6	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	19175379	3R_19175379_SNP [dm3] 3R_23349657_SNP [dm6]	A	G	5.005e^-9	1.369e^-4	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9661271	3R_9661271_SNP [dm3] 3R_13835549_SNP [dm6]	G	A	5.242e^-9	1.393e^-4	INTRON Nsf2
3R	9661326	3R_9661326_SNP [dm3] 3R_13835604_SNP [dm6]	C	A	5.242e^-9	1.393e^-4	INTRON Nsf2	TF binding site mE1_TFBS_cad
3R	19375447	3R_19375447_SNP [dm3] 3R_23549725_SNP [dm6]	A	C	5.450e^-9	1.428e^-4	INTERGENIC
3R	14205913	3R_14205913_INS [dm3] 3R_18380191_INS [dm6]	T	TAGCACGTTTACTGGGAT...	6.188e^-9	1.599e^-4	INTRON CG7675
2L	5100022	2L_5100022_SNP [dm3] 2L_5100022_SNP [dm6]	T	C	6.554e^-9	1.666e^-4	SYNONYMOUS_CODING CG8680 UPSTREAM Msp300 DOWNSTREAM CG4230	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2R	14602122	2R_14602122_SNP [dm3] 2R_18714617_SNP [dm6]	C	A	6.628e^-9	1.666e^-4	INTERGENIC
3L	10428792	3L_10428792_SNP [dm3] 3L_10435692_SNP [dm6]	T	C	6.853e^-9	1.700e^-4	INTERGENIC
3L	16895072	3L_16895072_SNP [dm3] 3L_16901972_SNP [dm6]	A	G	7.213e^-9	1.743e^-4	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_inv
3L	16895171	3L_16895171_SNP [dm3] 3L_16902071_SNP [dm6]	G	A	7.213e^-9	1.743e^-4	INTRON Lmpt	TF binding site mE1_TFBS_inv
2R	17850182	2R_17850182_DEL [dm3] 2R_21962677_DEL [dm6]	ATGTA	A	7.358e^-9	1.755e^-4	INTERGENIC
2R	12322079	2R_12322079_SNP [dm3] 2R_16434574_SNP [dm6]	A	C	7.554e^-9	1.779e^-4	SYNONYMOUS_CODING CG7848	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	23516657	3R_23516657_SNP [dm3] 3R_27690935_SNP [dm6]	G	T	7.727e^-9	1.797e^-4	INTRON CG12880	TF binding site mE1_TFBS_chinmo
3R	21398042	3R_21398042_DEL [dm3] 3R_25572320_DEL [dm6]	TCCTGGTTGCCCCT...	T	7.892e^-9	1.801e^-4	INTRON msi
3L	8256840	3L_8256840_SNP [dm3] 3L_8263740_SNP [dm6]	C	G	7.939e^-9	1.801e^-4	INTRON Dscam4
X	21880112	X_21880112_SNP [dm3] X_22478276_SNP [dm6]	T	C	8.137e^-9	1.802e^-4	UPSTREAM CG12576 INTRON CG12576
X	21880181	X_21880181_SNP [dm3] X_22478345_SNP [dm6]	G	A	8.137e^-9	1.802e^-4	UPSTREAM CG12576 INTRON CG12576
2R	16925812	2R_16925812_SNP [dm3] 2R_21038307_SNP [dm6]	T	A	8.439e^-9	1.847e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	21194491	3R_21194491_SNP [dm3] 3R_25368769_SNP [dm6]	G	T	9.031e^-9	1.934e^-4	INTRON Fur1
2R	14602986	2R_14602986_SNP [dm3] 2R_18715481_SNP [dm6]	A	G	9.043e^-9	1.934e^-4	INTERGENIC
2L	5385717	2L_5385717_SNP [dm3] 2L_5385717_SNP [dm6]	A	G	9.761e^-9	2.064e^-4	INTERGENIC
2R	12322058	2R_12322058_SNP [dm3] 2R_16434553_SNP [dm6]	C	T	1.045e^-8	2.135e^-4	SYNONYMOUS_CODING CG7848	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	12292906	3L_12292906_SNP [dm3] 3L_12299806_SNP [dm6]	G	A	1.056e^-8	2.135e^-4	INTERGENIC
3L	12292924	3L_12292924_SNP [dm3] 3L_12299824_SNP [dm6]	C	G	1.056e^-8	2.135e^-4	INTERGENIC
3L	12292929	3L_12292929_SNP [dm3] 3L_12299829_SNP [dm6]	A	C	1.056e^-8	2.135e^-4	INTERGENIC
2L	12381479	2L_12381479_SNP [dm3] 2L_12381479_SNP [dm6]	T	C	1.110e^-8	2.220e^-4	INTRON bru-2
3R	23837706	3R_23837706_SNP [dm3] 3R_28011984_SNP [dm6]	C	T	1.210e^-8	2.366e^-4	INTERGENIC
3R	24512436	3R_24512436_SNP [dm3] 3R_28686714_SNP [dm6]	A	T	1.210e^-8	2.366e^-4	INTRON CG9990
2L	5288591	2L_5288591_SNP [dm3] 2L_5288591_SNP [dm6]	C	A	1.231e^-8	2.366e^-4	UPSTREAM vri DOWNSTREAM CR44742 EXON CR44743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14603046	2R_14603046_SNP [dm3] 2R_18715541_SNP [dm6]	G	A	1.234e^-8	2.366e^-4	INTERGENIC
3L	15011771	3L_15011771_SNP [dm3] 3L_15018671_SNP [dm6]	A	G	1.310e^-8	2.461e^-4	INTRON Sytbeta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15011785	3L_15011785_SNP [dm3] 3L_15018685_SNP [dm6]	C	T	1.310e^-8	2.461e^-4	SPLICE_SITE_REGION Sytbeta INTRON Sytbeta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24637329	3R_24637329_SNP [dm3] 3R_28811607_SNP [dm6]	C	T	1.398e^-8	2.588e^-4	UPSTREAM CG1646 & 2 others INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	18281141	3L_18281141_SNP [dm3] 3L_18288041_SNP [dm6]	C	T	1.405e^-8	2.588e^-4	INTERGENIC
2L	6977268	2L_6977268_SNP [dm3] 2L_6977268_SNP [dm6]	G	T	1.511e^-8	2.730e^-4	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	12977947	3L_12977947_SNP [dm3] 3L_12984847_SNP [dm6]	A	G	1.511e^-8	2.730e^-4	INTERGENIC
3L	2675719	3L_2675719_SNP [dm3] 3L_2675719_SNP [dm6]	C	T	1.580e^-8	2.825e^-4	INTRON Fife
3R	11022088	3R_11022088_SNP [dm3] 3R_15196366_SNP [dm6]	A	T	1.606e^-8	2.825e^-4	UPSTREAM CG42542 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	1121458	2L_1121458_SNP [dm3] 2L_1121458_SNP [dm6]	A	G	1.616e^-8	2.825e^-4	INTRON Pino
3R	15504348	3R_15504348_SNP [dm3] 3R_19678626_SNP [dm6]	C	T	1.633e^-8	2.825e^-4	INTRON Naam
2L	13735776	2L_13735776_DEL [dm3] 2L_13735776_DEL [dm6]	TT	T	1.666e^-8	2.825e^-4	UPSTREAM CG31813 INTERGENIC	TF binding site mE1_TFBS_cad
2L	4571903	2L_4571903_SNP [dm3] 2L_4571903_SNP [dm6]	G	A	1.667e^-8	2.825e^-4	INTRON dp
3R	11814697	3R_11814697_DEL [dm3] 3R_15988975_DEL [dm6]	GAAGATA	CT	1.670e^-8	2.825e^-4	INTRON srp & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9928316	2R_9928316_SNP [dm3] 2R_14040811_SNP [dm6]	A	C	1.719e^-8	2.882e^-4	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	18281135	3L_18281135_SNP [dm3] 3L_18288035_SNP [dm6]	A	C	1.795e^-8	2.976e^-4	INTERGENIC
2L	17880567	2L_17880567_SNP [dm3] 2L_17880567_SNP [dm6]	T	C	1.824e^-8	2.976e^-4	INTERGENIC
2L	17880570	2L_17880570_SNP [dm3] 2L_17880570_SNP [dm6]	C	A	1.824e^-8	2.976e^-4	INTERGENIC
3L	6270788	3L_6270788_SNP [dm3] 3L_6277688_SNP [dm6]	C	G	1.869e^-8	3.000e^-4	DOWNSTREAM CG43168 INTERGENIC
2R	7698023	2R_7698023_DEL [dm3] 2R_11810518_DEL [dm6]	AGCGCCAGCAGCAACA...	A	1.881e^-8	3.000e^-4	CODON_DELETION ths
3L	7746389	3L_7746389_SNP [dm3] 3L_7753289_SNP [dm6]	A	T	1.886e^-8	3.000e^-4	INTRON CG32373
2L	8584835	2L_8584835_SNP [dm3] 2L_8584835_SNP [dm6]	T	C	1.941e^-8	3.048e^-4	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl
2L	9253437	2L_9253437_SNP [dm3] 2L_9253437_SNP [dm6]	G	T	1.950e^-8	3.048e^-4	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	15479655	3R_15479655_SNP [dm3] 3R_19653933_SNP [dm6]	A	G	2.065e^-8	3.175e^-4	SYNONYMOUS_CODING CG6184	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15485183	3R_15485183_SNP [dm3] 3R_19659461_SNP [dm6]	G	T	2.065e^-8	3.175e^-4	UPSTREAM ort INTERGENIC
3R	19297571	3R_19297571_INS [dm3] 3R_23471849_INS [dm6]	T	TT	2.126e^-8	3.242e^-4	UTR_5_PRIME CG4374
3R	21194578	3R_21194578_SNP [dm3] 3R_25368856_SNP [dm6]	C	A	2.148e^-8	3.249e^-4	INTRON Fur1
3L	7726323	3L_7726323_SNP [dm3] 3L_7733223_SNP [dm6]	C	G	2.185e^-8	3.279e^-4	DOWNSTREAM Snmp2 INTRON CG32373
X	12207372	X_12207372_SNP [dm3] X_12313339_SNP [dm6]	C	T	2.208e^-8	3.286e^-4	INTRON Ten-a
X	21986967	X_21986967_DEL [dm3] X_22585131_DEL [dm6]	CC	C	2.298e^-8	3.393e^-4	INTRON Cda4
3L	10300150	3L_10300150_SNP [dm3] 3L_10307050_SNP [dm6]	A	G	2.451e^-8	3.568e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	13719518	2L_13719518_SNP [dm3] 2L_13719518_SNP [dm6]	T	C	2.455e^-8	3.568e^-4	INTERGENIC
3R	9498953	3R_9498953_SNP [dm3] 3R_13673231_SNP [dm6]	G	A	2.573e^-8	3.603e^-4	START_GAINED Task6 UTR_5_PRIME Task6 INTRON Task6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3L	12280297	3L_12280297_DEL [dm3] 3L_12287197_DEL [dm6]	AA	C	2.576e^-8	3.603e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	14602913	2R_14602913_SNP [dm3] 2R_18715408_SNP [dm6]	G	T	2.582e^-8	3.603e^-4	INTERGENIC
X	3418894	X_3418894_SNP [dm3] X_3524861_SNP [dm6]	A	T	2.595e^-8	3.603e^-4	INTRON CG32791
X	3418895	X_3418895_SNP [dm3] X_3524862_SNP [dm6]	C	T	2.595e^-8	3.603e^-4	INTRON CG32791
X	3418899	X_3418899_SNP [dm3] X_3524866_SNP [dm6]	A	T	2.595e^-8	3.603e^-4	INTRON CG32791
3R	7673560	3R_7673560_SNP [dm3] 3R_11847838_SNP [dm6]	T	C	2.672e^-8	3.680e^-4	INTRON CG6959	TF binding site mE1_TFBS_cad
X	6022981	X_6022981_SNP [dm3] X_6128948_SNP [dm6]	G	A	2.703e^-8	3.680e^-4	INTRON Ca-alpha1T
3R	14373373	3R_14373373_SNP [dm3] 3R_18547651_SNP [dm6]	G	A	2.710e^-8	3.680e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21194505	3R_21194505_SNP [dm3] 3R_25368783_SNP [dm6]	T	A	2.925e^-8	3.943e^-4	INTRON Fur1
2L	17879790	2L_17879790_SNP [dm3] 2L_17879790_SNP [dm6]	A	T	3.028e^-8	4.025e^-4	INTERGENIC
2L	17880580	2L_17880580_SNP [dm3] 2L_17880580_SNP [dm6]	G	A	3.028e^-8	4.025e^-4	INTERGENIC
2R	13805835	2R_13805835_SNP [dm3] 2R_17918330_SNP [dm6]	C	T	3.108e^-8	4.043e^-4	INTRON Elk
2R	13805951	2R_13805951_SNP [dm3] 2R_17918446_SNP [dm6]	T	C	3.108e^-8	4.043e^-4	INTRON Elk
2R	13805966	2R_13805966_SNP [dm3] 2R_17918461_SNP [dm6]	C	G	3.108e^-8	4.043e^-4	INTRON Elk
2R	4208473	2R_4208473_SNP [dm3] 2R_8320968_SNP [dm6]	C	G	3.135e^-8	4.051e^-4	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	3418523	X_3418523_SNP [dm3] X_3524490_SNP [dm6]	A	G	3.407e^-8	4.368e^-4	INTRON CG32791
3L	5823018	3L_5823018_SNP [dm3] 3L_5829918_SNP [dm6]	T	C	3.428e^-8	4.368e^-4	INTRON vn
2R	8565954	2R_8565954_SNP [dm3] 2R_12678449_SNP [dm6]	C	A	3.528e^-8	4.465e^-4	INTRON CG42708
X	4923883	X_4923883_SNP [dm3] X_5029850_SNP [dm6]	A	G	4.175e^-8	5.207e^-4	INTRON CR44833
X	4923889	X_4923889_SNP [dm3] X_5029856_SNP [dm6]	T	C	4.175e^-8	5.207e^-4	INTRON CR44833
3L	18281016	3L_18281016_SNP [dm3] 3L_18287916_SNP [dm6]	A	T	4.210e^-8	5.207e^-4	INTERGENIC
2L	17880627	2L_17880627_SNP [dm3] 2L_17880627_SNP [dm6]	G	A	4.226e^-8	5.207e^-4	INTERGENIC
3R	26174730	3R_26174730_SNP [dm3] 3R_30349008_SNP [dm6]	C	A	4.328e^-8	5.297e^-4	INTRON hdc
2L	4014043	2L_4014043_SNP [dm3] 2L_4014043_SNP [dm6]	T	A	4.516e^-8	5.492e^-4	INTERGENIC
3R	19566855	3R_19566855_INS [dm3] 3R_23741133_INS [dm6]	A	ATAA	4.850e^-8	5.828e^-4	INTRON Hmgcr
3R	22989400	3R_22989400_SNP [dm3] 3R_27163678_SNP [dm6]	T	A	4.855e^-8	5.828e^-4	SPLICE_SITE_REGION ppk31 DOWNSTREAM CG5909 INTRON ppk31
3L	4391057	3L_4391057_SNP [dm3] 3L_4391057_SNP [dm6]	T	C	4.937e^-8	5.856e^-4	SYNONYMOUS_CODING slow	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17276572	X_17276572_SNP [dm3] X_17382539_SNP [dm6]	G	A	4.942e^-8	5.856e^-4	INTERGENIC
2L	11896191	2L_11896191_SNP [dm3] 2L_11896191_SNP [dm6]	G	C	5.051e^-8	5.948e^-4	INTRON Pde1c
2L	10207889	2L_10207889_SNP [dm3] 2L_10207889_SNP [dm6]	T	C	5.141e^-8	5.978e^-4	UPSTREAM CG5734 & 1 other INTRON CG5731
2L	10207907	2L_10207907_SNP [dm3] 2L_10207907_SNP [dm6]	T	C	5.141e^-8	5.978e^-4	UPSTREAM CG5734 & 1 other INTRON CG5731
2R	8575416	2R_8575416_SNP [dm3] 2R_12687911_SNP [dm6]	A	T	5.288e^-8	6.050e^-4	SYNONYMOUS_CODING CG13148 DOWNSTREAM CG30053	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21874926	X_21874926_SNP [dm3] X_22473090_SNP [dm6]	T	C	5.351e^-8	6.050e^-4	UPSTREAM CG14618 INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3R	19517410	3R_19517410_SNP [dm3] 3R_23691688_SNP [dm6]	C	G	5.372e^-8	6.050e^-4	SYNONYMOUS_CODING CG10254
3R	15300609	3R_15300609_SNP [dm3] 3R_19474887_SNP [dm6]	T	A	5.380e^-8	6.050e^-4	INTRON Dys
3R	15300612	3R_15300612_SNP [dm3] 3R_19474890_SNP [dm6]	A	G	5.380e^-8	6.050e^-4	INTRON Dys
2R	2012719	2R_2012719_SNP [dm3] 2R_6125214_SNP [dm6]	G	C	5.398e^-8	6.050e^-4	INTRON EcR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	11141836	X_11141836_SNP [dm3] X_11247803_SNP [dm6]	C	T	5.569e^-8	6.170e^-4	UPSTREAM CG15198 INTRON CG44422
2L	12381390	2L_12381390_SNP [dm3] 2L_12381390_SNP [dm6]	A	T	5.571e^-8	6.170e^-4	INTRON bru-2
3L	3497146	3L_3497146_SNP [dm3] 3L_3497146_SNP [dm6]	C	A	6.066e^-8	6.650e^-4	INTRON CG42324
3R	19182904	3R_19182904_SNP [dm3] 3R_23357182_SNP [dm6]	T	C	6.106e^-8	6.650e^-4	INTRON Sec13	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	8278517	X_8278517_SNP [dm3] X_8384484_SNP [dm6]	C	A	6.112e^-8	6.650e^-4	INTERGENIC
3R	24495773	3R_24495773_SNP [dm3] 3R_28670051_SNP [dm6]	A	G	6.257e^-8	6.768e^-4	NON_SYNONYMOUS_CODING CG33346 UPSTREAM CG9989
3L	18238781	3L_18238781_SNP [dm3] 3L_18245681_SNP [dm6]	T	C	6.329e^-8	6.806e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	10139170	3R_10139170_SNP [dm3] 3R_14313448_SNP [dm6]	G	A	6.535e^-8	6.988e^-4	INTRON CG31321
3L	9484494	3L_9484494_SNP [dm3] 3L_9491394_SNP [dm6]	G	A	6.754e^-8	7.114e^-4	INTRON CG32037	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	11141815	X_11141815_SNP [dm3] X_11247782_SNP [dm6]	A	T	6.762e^-8	7.114e^-4	UPSTREAM CG15198 INTRON CG44422
3R	13953034	3R_13953034_SNP [dm3] 3R_18127312_SNP [dm6]	T	A	6.768e^-8	7.114e^-4	SYNONYMOUS_CODING sr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6396350	2L_6396350_SNP [dm3] 2L_6396350_SNP [dm6]	C	T	6.846e^-8	7.131e^-4	SYNONYMOUS_CODING CG42369 INTRON CG42368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19182899	3R_19182899_SNP [dm3] 3R_23357177_SNP [dm6]	G	A	6.860e^-8	7.131e^-4	INTRON Sec13	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	18281002	3L_18281002_SNP [dm3] 3L_18287902_SNP [dm6]	C	T	7.333e^-8	7.580e^-4	INTERGENIC
2L	10715675	2L_10715675_SNP [dm3] 2L_10715675_SNP [dm6]	G	T	7.855e^-8	8.028e^-4	INTERGENIC
3L	20874849	3L_20874849_SNP [dm3] 3L_20881749_SNP [dm6]	C	A	7.869e^-8	8.028e^-4	UTR_5_PRIME CG32432
3R	20270352	3R_20270352_SNP [dm3] 3R_24444630_SNP [dm6]	T	C	7.922e^-8	8.028e^-4	INTRON nAChRalpha1
3R	22989433	3R_22989433_SNP [dm3] 3R_27163711_SNP [dm6]	A	C	7.940e^-8	8.028e^-4	DOWNSTREAM CG5909 & 1 other INTRON ppk31
2L	19520473	2L_19520473_SNP [dm3] 2L_19520473_SNP [dm6]	G	A	8.231e^-8	8.278e^-4	INTRON CG10132
3R	24658738	3R_24658738_SNP [dm3] 3R_28833016_SNP [dm6]	A	G	8.795e^-8	8.798e^-4	UTR_3_PRIME Apc UPSTREAM WASp
2L	5564001	2L_5564001_DEL [dm3] 2L_5564001_DEL [dm6]	GTTTGAG	G	9.048e^-8	9.002e^-4	DOWNSTREAM GluRIIB & 1 other INTERGENIC
2R	4198529	2R_4198529_SNP [dm3] 2R_8311024_SNP [dm6]	G	C	9.437e^-8	9.339e^-4	UPSTREAM CR44450 DOWNSTREAM CR44448 EXON CR44449
2L	12859160	2L_12859160_SNP [dm3] 2L_12859160_SNP [dm6]	T	A	9.591e^-8	9.353e^-4	INTERGENIC
2L	12859161	2L_12859161_SNP [dm3] 2L_12859161_SNP [dm6]	A	T	9.591e^-8	9.353e^-4	INTERGENIC
2L	4571927	2L_4571927_SNP [dm3] 2L_4571927_SNP [dm6]	T	C	9.602e^-8	9.353e^-4	INTRON dp
2R	8158365	2R_8158365_INS [dm3] 2R_12270860_INS [dm6]	T	TAATAT	9.661e^-8	9.357e^-4	INTRON Cam
X	21874180	X_21874180_SNP [dm3] X_22472344_SNP [dm6]	G	C	9.706e^-8	9.357e^-4	UPSTREAM CG14613 INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3R	21336127	3R_21336127_SNP [dm3] 3R_25510405_SNP [dm6]	T	A	9.993e^-8	9.502e^-4	INTERGENIC
2R	13806152	2R_13806152_SNP [dm3] 2R_17918647_SNP [dm6]	A	G	1.002e^-7	9.502e^-4	INTRON Elk
2R	13806165	2R_13806165_SNP [dm3] 2R_17918660_SNP [dm6]	T	C	1.002e^-7	9.502e^-4	INTRON Elk
X	21874282	X_21874282_SNP [dm3] X_22472446_SNP [dm6]	A	G	1.006e^-7	9.502e^-4	UPSTREAM CG14613 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14217037	3L_14217037_SNP [dm3] 3L_14223937_SNP [dm6]	A	G	1.047e^-7	9.836e^-4	INTRON nuf
X	17130146	X_17130146_INS [dm3] X_17236113_INS [dm6]	C	CTGT	1.062e^-7	9.927e^-4	INTRON f
3R	15506149	3R_15506149_SNP [dm3] 3R_19680427_SNP [dm6]	T	C	1.083e^-7	0.001	INTRON Naam
3R	9285697	3R_9285697_SNP [dm3] 3R_13459975_SNP [dm6]	A	C	1.087e^-7	0.001	SYNONYMOUS_CODING CG14372 INTRON CR17025
2R	16202794	2R_16202794_SNP [dm3] 2R_20315289_SNP [dm6]	G	A	1.093e^-7	0.001	UPSTREAM CR44642 INTRON CG13868	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	7271892	2L_7271892_DEL [dm3] 2L_7271892_DEL [dm6]	TATTT	T	1.208e^-7	0.001	INTRON Wnt4
2L	3268624	2L_3268624_SNP [dm3] 2L_3268624_SNP [dm6]	A	T	1.226e^-7	0.001	UPSTREAM CG3347 EXON CR44484
2L	14213345	2L_14213345_SNP [dm3] 2L_14213345_SNP [dm6]	A	T	1.232e^-7	0.001	INTRON Dyrk2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10345367	2L_10345367_SNP [dm3] 2L_10345367_SNP [dm6]	T	G	1.242e^-7	0.001	INTRON CG5022	TF binding site mE1_TFBS_HSA
2R	14801302	2R_14801302_INS [dm3] 2R_18913797_INS [dm6]	T	TCGTTT	1.275e^-7	0.001	INTRON sano
2L	3995454	2L_3995454_INS [dm3] 2L_3995454_INS [dm6]	A	AA	1.282e^-7	0.001	INTERGENIC
2L	3995458	2L_3995458_SNP [dm3] 2L_3995458_SNP [dm6]	T	A	1.282e^-7	0.001	INTERGENIC
3L	3792839	3L_3792839_SNP [dm3] 3L_3792839_SNP [dm6]	C	T	1.330e^-7	0.001	INTRON CG32264
X	19199755	X_19199755_SNP [dm3] X_19305722_SNP [dm6]	A	G	1.334e^-7	0.001	UPSTREAM CG8051 INTRON CG8051
2L	5300804	2L_5300804_SNP [dm3] 2L_5300804_SNP [dm6]	G	A	1.338e^-7	0.001	INTRON vri	TF binding site BDTNP1_TFBS_dl
3L	13201632	3L_13201632_SNP [dm3] 3L_13208532_SNP [dm6]	G	C	1.347e^-7	0.001	DOWNSTREAM CR45096 INTERGENIC
3L	13202077	3L_13202077_SNP [dm3] 3L_13208977_SNP [dm6]	A	G	1.347e^-7	0.001	UPSTREAM CR45096 INTERGENIC
2L	6324938	2L_6324938_SNP [dm3] 2L_6324938_SNP [dm6]	T	A	1.359e^-7	0.001	INTRON PDZ-GEF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	21896185	X_21896185_SNP [dm3] X_22494349_SNP [dm6]	C	A	1.375e^-7	0.001	INTRON l_1_G0196
X	21870030	X_21870030_SNP [dm3] X_22468194_SNP [dm6]	G	C	1.379e^-7	0.001	UTR_3_PRIME CG14619
3R	25780669	3R_25780669_SNP [dm3] 3R_29954947_SNP [dm6]	T	C	1.417e^-7	0.001	INTRON TkR99D
3R	25780674	3R_25780674_SNP [dm3] 3R_29954952_SNP [dm6]	G	A	1.417e^-7	0.001	INTRON TkR99D
2L	3266147	2L_3266147_SNP [dm3] 2L_3266147_SNP [dm6]	G	A	1.462e^-7	0.001	UPSTREAM CR45706 INTERGENIC
2L	3266141	2L_3266141_SNP [dm3] 2L_3266141_SNP [dm6]	A	G	1.470e^-7	0.001	UPSTREAM CR45706 INTERGENIC
2R	14343127	2R_14343127_SNP [dm3] 2R_18455622_SNP [dm6]	G	A	1.501e^-7	0.001	DOWNSTREAM CG30116 INTERGENIC
2R	7563904	2R_7563904_SNP [dm3] 2R_11676399_SNP [dm6]	T	C	1.543e^-7	0.001	INTRON Roc2 & 1 other	TF binding site mE1_TFBS_cad
3R	10149455	3R_10149455_SNP [dm3] 3R_14323733_SNP [dm6]	G	A	1.558e^-7	0.001	INTRON Afti
2L	3265407	2L_3265407_SNP [dm3] 2L_3265407_SNP [dm6]	A	G	1.567e^-7	0.001	EXON CR45706
3R	15031851	3R_15031851_SNP [dm3] 3R_19206129_SNP [dm6]	C	T	1.592e^-7	0.001	INTERGENIC
3R	5403854	3R_5403854_SNP [dm3] 3R_9578132_SNP [dm6]	T	C	1.599e^-7	0.001	UTR_5_PRIME CG8273 UPSTREAM Kap-alpha3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	2731807	3L_2731807_SNP [dm3] 3L_2731807_SNP [dm6]	A	T	1.612e^-7	0.001	INTRON Mrtf
2L	8134946	2L_8134946_SNP [dm3] 2L_8134946_SNP [dm6]	C	T	1.628e^-7	0.001	SYNONYMOUS_CODING CG8552 DOWNSTREAM CG8668	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3418848	X_3418848_SNP [dm3] X_3524815_SNP [dm6]	T	C	1.633e^-7	0.001	INTRON CG32791
2L	8046610	2L_8046610_SNP [dm3] 2L_8046610_SNP [dm6]	C	T	1.669e^-7	0.001	SYNONYMOUS_CODING CG7466
3L	19956325	3L_19956325_SNP [dm3] 3L_19963225_SNP [dm6]	T	A	1.681e^-7	0.001	INTRON Ac76E
3R	13357479	3R_13357479_SNP [dm3] 3R_17531757_SNP [dm6]	T	C	1.741e^-7	0.001	DOWNSTREAM CG5823 INTERGENIC
3L	13201962	3L_13201962_SNP [dm3] 3L_13208862_SNP [dm6]	G	T	1.768e^-7	0.001	EXON CR45096
3L	13202072	3L_13202072_SNP [dm3] 3L_13208972_SNP [dm6]	A	G	1.768e^-7	0.001	UPSTREAM CR45096 INTERGENIC
2L	5390900	2L_5390900_SNP [dm3] 2L_5390900_SNP [dm6]	C	T	1.798e^-7	0.001	INTERGENIC
3L	12473280	3L_12473280_SNP [dm3] 3L_12480180_SNP [dm6]	T	G	1.804e^-7	0.001	INTRON CG10663
2R	7684767	2R_7684767_SNP [dm3] 2R_11797262_SNP [dm6]	T	A	2.008e^-7	0.002	INTRON ths	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	14217209	3L_14217209_SNP [dm3] 3L_14224109_SNP [dm6]	T	G	2.010e^-7	0.002	INTRON nuf
3L	6706919	3L_6706919_DEL [dm3] 3L_6713819_DEL [dm6]	AT	A	2.022e^-7	0.002	UTR_3_PRIME ple DOWNSTREAM ple
3R	19171000	3R_19171000_SNP [dm3] 3R_23345278_SNP [dm6]	T	C	2.084e^-7	0.002	INTRON pnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2R	17919893	2R_17919893_SNP [dm3] 2R_22032388_SNP [dm6]	T	C	2.124e^-7	0.002	INTRON CG34370
2L	13321124	2L_13321124_SNP [dm3] 2L_13321124_SNP [dm6]	G	T	2.149e^-7	0.002	INTRON CG43778
3R	16750044	3R_16750044_SNP [dm3] 3R_20924322_SNP [dm6]	A	T	2.150e^-7	0.002	INTRON CG31191 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15035512	2L_15035512_SNP [dm3] 2L_15035512_SNP [dm6]	A	C	2.200e^-7	0.002	UTR_5_PRIME yellow-c DOWNSTREAM GABA-B-R1 & 1 other
X	21880291	X_21880291_SNP [dm3] X_22478455_SNP [dm6]	T	C	2.233e^-7	0.002	UPSTREAM CG12576 INTRON CG12576
3R	5403998	3R_5403998_SNP [dm3] 3R_9578276_SNP [dm6]	A	G	2.258e^-7	0.002	NON_SYNONYMOUS_CODING CG8273 UPSTREAM Kap-alpha3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	2624276	2R_2624276_SNP [dm3] 2R_6736771_SNP [dm6]	C	T	2.281e^-7	0.002	INTRON l_2_01289
2R	9925531	2R_9925531_SNP [dm3] 2R_14038026_SNP [dm6]	G	A	2.311e^-7	0.002	SPLICE_SITE_REGION mam INTRON mam
3L	12291556	3L_12291556_SNP [dm3] 3L_12298456_SNP [dm6]	G	A	2.341e^-7	0.002	INTERGENIC	TF binding site mE1_TFBS_cad
3R	11813813	3R_11813813_SNP [dm3] 3R_15988091_SNP [dm6]	C	T	2.356e^-7	0.002	INTRON srp & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14290912	3R_14290912_SNP [dm3] 3R_18465190_SNP [dm6]	A	G	2.360e^-7	0.002	INTRON fru
2R	14343060	2R_14343060_SNP [dm3] 2R_18455555_SNP [dm6]	A	G	2.384e^-7	0.002	INTERGENIC
X	8289609	X_8289609_SNP [dm3] X_8395576_SNP [dm6]	A	C	2.400e^-7	0.002	INTERGENIC
X	4207725	X_4207725_SNP [dm3] X_4313692_SNP [dm6]	T	G	2.406e^-7	0.002	DOWNSTREAM mei-9 INTRON CR44957
2L	13719537	2L_13719537_SNP [dm3] 2L_13719537_SNP [dm6]	A	C	2.479e^-7	0.002	INTERGENIC
2L	13719547	2L_13719547_DEL [dm3] 2L_13719547_DEL [dm6]	CAGA	TTT	2.479e^-7	0.002	INTERGENIC
2L	13719563	2L_13719563_SNP [dm3] 2L_13719563_SNP [dm6]	A	G	2.479e^-7	0.002	INTERGENIC
X	3418843	X_3418843_SNP [dm3] X_3524810_SNP [dm6]	C	T	2.523e^-7	0.002	INTRON CG32791
3R	1245944	3R_1245944_INS [dm3] 3R_5420222_INS [dm6]	C	CAC	2.680e^-7	0.002	INTRON CG14669
2R	15942664	2R_15942664_SNP [dm3] 2R_20055159_SNP [dm6]	T	C	2.681e^-7	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	19234410	3L_19234410_SNP [dm3] 3L_19241310_SNP [dm6]	C	A	2.744e^-7	0.002	INTERGENIC
X	8278504	X_8278504_DEL [dm3] X_8384471_DEL [dm6]	CTGGGTC	C	2.773e^-7	0.002	INTERGENIC
X	16583376	X_16583376_SNP [dm3] X_16689343_SNP [dm6]	C	T	2.807e^-7	0.002	INTRON Sep4
2L	16584162	2L_16584162_SNP [dm3] 2L_16584162_SNP [dm6]	C	G	2.933e^-7	0.002	INTRON CG42389
3R	21192730	3R_21192730_SNP [dm3] 3R_25367008_SNP [dm6]	A	G	2.963e^-7	0.002	INTRON Fur1
X	5501593	X_5501593_SNP [dm3] X_5607560_SNP [dm6]	G	A	2.974e^-7	0.002	INTRON Vsx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sens
2L	16064817	2L_16064817_SNP [dm3] 2L_16064817_SNP [dm6]	C	T	2.981e^-7	0.002	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
2L	5675091	2L_5675091_SNP [dm3] 2L_5675091_SNP [dm6]	C	T	3.035e^-7	0.002	INTERGENIC
3L	18186186	3L_18186186_SNP [dm3] 3L_18193086_SNP [dm6]	G	A	3.146e^-7	0.002	INTERGENIC
3R	19170978	3R_19170978_SNP [dm3] 3R_23345256_SNP [dm6]	C	A	3.188e^-7	0.002	INTRON pnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2R	2012498	2R_2012498_SNP [dm3] 2R_6124993_SNP [dm6]	T	A	3.205e^-7	0.002	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	20723676	3R_20723676_SNP [dm3] 3R_24897954_SNP [dm6]	G	A	3.235e^-7	0.002	UTR_3_PRIME CG13643 DOWNSTREAM CG11069
2L	12365239	2L_12365239_SNP [dm3] 2L_12365239_SNP [dm6]	A	T	3.288e^-7	0.002	INTRON bru-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
3L	14601430	3L_14601430_SNP [dm3] 3L_14608330_SNP [dm6]	T	C	3.308e^-7	0.002	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	13216180	3L_13216180_SNP [dm3] 3L_13223080_SNP [dm6]	T	C	3.467e^-7	0.002	INTERGENIC
2L	5377633	2L_5377633_SNP [dm3] 2L_5377633_SNP [dm6]	G	T	3.476e^-7	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	20874135	3L_20874135_SNP [dm3] 3L_20881035_SNP [dm6]	C	T	3.536e^-7	0.002	INTRON CG32432
X	21986961	X_21986961_SNP [dm3] X_22585125_SNP [dm6]	A	T	3.564e^-7	0.002	INTRON Cda4
3L	10823837	3L_10823837_SNP [dm3] 3L_10830737_SNP [dm6]	A	T	3.567e^-7	0.002	INTERGENIC
2L	6312138	2L_6312138_SNP [dm3] 2L_6312138_SNP [dm6]	T	A	3.569e^-7	0.002	INTRON Ddr
3R	15482484	3R_15482484_SNP [dm3] 3R_19656762_SNP [dm6]	C	T	3.681e^-7	0.002	UPSTREAM CG6184 INTRON CG6184	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
X	5501588	X_5501588_INS [dm3] X_5607555_INS [dm6]	C	CGC	3.721e^-7	0.002	INTRON Vsx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sens
X	20155080	X_20155080_DEL [dm3] X_20284053_DEL [dm6]	CGAG	C	3.737e^-7	0.002	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	3976278	3L_3976278_SNP [dm3] 3L_3976278_SNP [dm6]	C	G	3.811e^-7	0.002	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8158371	2R_8158371_INS [dm3] 2R_12270866_INS [dm6]	T	TGCGCCTGCCTGCTCA...	3.891e^-7	0.002	INTRON Cam
3L	18235370	3L_18235370_SNP [dm3] 3L_18242270_SNP [dm6]	G	A	3.895e^-7	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18235777	3L_18235777_SNP [dm3] 3L_18242677_SNP [dm6]	A	T	3.895e^-7	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18321002	X_18321002_SNP [dm3] X_18426969_SNP [dm6]	T	C	3.895e^-7	0.002	UTR_3_PRIME CG42323
3L	8521065	3L_8521065_DEL [dm3] 3L_8527965_DEL [dm6]	ACAGCACTA	A	3.919e^-7	0.002	UPSTREAM foi INTRON foi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20155078	X_20155078_SNP [dm3] X_20284051_SNP [dm6]	A	G	3.924e^-7	0.002	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	15179941	2L_15179941_SNP [dm3] 2L_15179941_SNP [dm6]	G	A	3.956e^-7	0.002	INTRON CG4168
X	21986911	X_21986911_SNP [dm3] X_22585075_SNP [dm6]	T	C	3.961e^-7	0.002	INTRON Cda4
2R	4200134	2R_4200134_SNP [dm3] 2R_8312629_SNP [dm6]	G	A	3.961e^-7	0.002	DOWNSTREAM CR44450 INTERGENIC
2R	4201296	2R_4201296_SNP [dm3] 2R_8313791_SNP [dm6]	T	A	3.961e^-7	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4214598	2R_4214598_SNP [dm3] 2R_8327093_SNP [dm6]	C	T	3.961e^-7	0.002	UPSTREAM pdm3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	4221196	2R_4221196_SNP [dm3] 2R_8333691_SNP [dm6]	T	C	3.961e^-7	0.002	INTRON pdm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12364673	3R_12364673_SNP [dm3] 3R_16538951_SNP [dm6]	C	G	3.961e^-7	0.002	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
X	4166567	X_4166567_SNP [dm3] X_4272534_SNP [dm6]	A	C	3.972e^-7	0.002	INTERGENIC
3R	19170975	3R_19170975_SNP [dm3] 3R_23345253_SNP [dm6]	C	A	4.132e^-7	0.003	INTRON pnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	3268645	2L_3268645_SNP [dm3] 2L_3268645_SNP [dm6]	G	C	4.261e^-7	0.003	UPSTREAM CG3347 EXON CR44484
2L	12666403	2L_12666403_SNP [dm3] 2L_12666403_SNP [dm6]	C	T	4.365e^-7	0.003	DOWNSTREAM CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7695331	2R_7695331_SNP [dm3] 2R_11807826_SNP [dm6]	C	A	4.397e^-7	0.003	INTRON ths
2R	7696138	2R_7696138_SNP [dm3] 2R_11808633_SNP [dm6]	C	T	4.397e^-7	0.003	INTRON ths
2R	7697004	2R_7697004_SNP [dm3] 2R_11809499_SNP [dm6]	A	C	4.397e^-7	0.003	INTRON ths
2R	7697014	2R_7697014_DEL [dm3] 2R_11809509_DEL [dm6]	CATTAAATTTTCGCTTTA...	C	4.397e^-7	0.003	INTRON ths
2R	7697051	2R_7697051_SNP [dm3] 2R_11809546_SNP [dm6]	A	C	4.397e^-7	0.003	INTRON ths
2R	7697052	2R_7697052_INS [dm3] 2R_11809547_INS [dm6]	T	TTAC	4.397e^-7	0.003	INTRON ths
3R	15482488	3R_15482488_SNP [dm3] 3R_19656766_SNP [dm6]	T	C	4.546e^-7	0.003	UPSTREAM CG6184 INTRON CG6184	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
X	4207747	X_4207747_SNP [dm3] X_4313714_SNP [dm6]	T	G	4.549e^-7	0.003	DOWNSTREAM mei-9 INTRON CR44957
3R	15484739	3R_15484739_SNP [dm3] 3R_19659017_SNP [dm6]	T	A	4.555e^-7	0.003	UPSTREAM ort INTERGENIC
3R	7498619	3R_7498619_SNP [dm3] 3R_11672897_SNP [dm6]	T	A	4.606e^-7	0.003	SYNONYMOUS_CODING CG42327	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18237340	3L_18237340_SNP [dm3] 3L_18244240_SNP [dm6]	A	G	4.628e^-7	0.003	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11415469	2R_11415469_SNP [dm3] 2R_15527964_SNP [dm6]	G	T	4.684e^-7	0.003	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5290131	2L_5290131_SNP [dm3] 2L_5290131_SNP [dm6]	T	A	4.697e^-7	0.003	INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17880435	2L_17880435_DEL [dm3] 2L_17880435_DEL [dm6]	TATA	T	4.745e^-7	0.003	INTERGENIC
3L	18235747	3L_18235747_SNP [dm3] 3L_18242647_SNP [dm6]	T	A	4.785e^-7	0.003	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9510274	3L_9510274_SNP [dm3] 3L_9517174_SNP [dm6]	T	C	4.791e^-7	0.003	INTRON CG33700
2R	15046494	2R_15046494_SNP [dm3] 2R_19158989_SNP [dm6]	C	T	4.939e^-7	0.003	SYNONYMOUS_CODING ena	TF binding site mE1_TFBS_inv
X	6616092	X_6616092_SNP [dm3] X_6722059_SNP [dm6]	G	A	4.958e^-7	0.003	SYNONYMOUS_CODING CG3168
3L	18236197	3L_18236197_SNP [dm3] 3L_18243097_SNP [dm6]	G	T	5.021e^-7	0.003	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14583806	2R_14583806_DEL [dm3] 2R_18696301_DEL [dm6]	TGAC	T	5.087e^-7	0.003	UPSTREAM CG15071 INTRON Sik3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4200152	2R_4200152_SNP [dm3] 2R_8312647_SNP [dm6]	A	T	5.087e^-7	0.003	DOWNSTREAM CR44450 INTERGENIC
3L	11369616	3L_11369616_SNP [dm3] 3L_11376516_SNP [dm6]	G	A	5.129e^-7	0.003	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3912851	2R_3912851_SNP [dm3] 2R_8025346_SNP [dm6]	G	T	5.233e^-7	0.003	EXON CR45267	TF binding site BDTNP1_TFBS_prd
3L	10693735	3L_10693735_SNP [dm3] 3L_10700635_SNP [dm6]	G	T	5.239e^-7	0.003	INTERGENIC
3R	22053633	3R_22053633_SNP [dm3] 3R_26227911_SNP [dm6]	A	C	5.271e^-7	0.003	INTERGENIC
2L	14192851	2L_14192851_SNP [dm3] 2L_14192851_SNP [dm6]	G	C	5.400e^-7	0.003	INTRON Dyrk2
3R	24807487	3R_24807487_SNP [dm3] 3R_28981765_SNP [dm6]	T	G	5.455e^-7	0.003	INTERGENIC
2L	15961778	2L_15961778_DEL [dm3] 2L_15961778_DEL [dm6]	AA	A	5.518e^-7	0.003	DOWNSTREAM CR43803 INTRON beat-Ib
2L	8128082	2L_8128082_DEL [dm3] 2L_8128082_DEL [dm6]	TAGAATACCAAGGCAAGATT...	A	5.527e^-7	0.003	INTRON CG8668	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	1841400	X_1841400_SNP [dm3] X_1947367_SNP [dm6]	A	G	5.532e^-7	0.003	INTRON Hr4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	15512455	X_15512455_SNP [dm3] X_15618422_SNP [dm6]	A	G	5.608e^-7	0.003	INTRON sog	TF binding site BDTNP1_TFBS_dl
3R	19113432	3R_19113432_SNP [dm3] 3R_23287710_SNP [dm6]	T	C	5.613e^-7	0.003	SYNONYMOUS_CODING CG17083 DOWNSTREAM CG4434
2L	2734177	2L_2734177_SNP [dm3] 2L_2734177_SNP [dm6]	G	A	5.886e^-7	0.003	INTRON CG31689
3L	17477702	3L_17477702_SNP [dm3] 3L_17484602_SNP [dm6]	C	G	5.892e^-7	0.003	INTRON CG6333
2R	2738245	2R_2738245_SNP [dm3] 2R_6850740_SNP [dm6]	C	A	5.895e^-7	0.003	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	10435721	X_10435721_DEL [dm3] X_10541688_DEL [dm6]	AAAATGAGA	A	5.922e^-7	0.003	INTRON spri
2R	4199995	2R_4199995_SNP [dm3] 2R_8312490_SNP [dm6]	C	T	5.934e^-7	0.003	DOWNSTREAM CR44450 INTERGENIC
2R	19322579	2R_19322579_DEL [dm3] 2R_23435056_DEL [dm6]	ATGGCTCAAA	A	5.938e^-7	0.003	INTERGENIC
3R	14165316	3R_14165316_SNP [dm3] 3R_18339594_SNP [dm6]	C	A	5.938e^-7	0.003	INTRON CG15803
3R	22632420	3R_22632420_SNP [dm3] 3R_26806698_SNP [dm6]	T	C	5.938e^-7	0.003	INTRON Tl
3L	3497066	3L_3497066_SNP [dm3] 3L_3497066_SNP [dm6]	T	C	6.001e^-7	0.003	INTRON CG42324
2L	10316402	2L_10316402_SNP [dm3] 2L_10316402_SNP [dm6]	T	A	6.098e^-7	0.003	INTRON CG4972
3L	6015274	3L_6015274_SNP [dm3] 3L_6022174_SNP [dm6]	C	G	6.120e^-7	0.003	INTRON PVRAP
3L	10414414	3L_10414414_SNP [dm3] 3L_10421314_SNP [dm6]	C	T	6.163e^-7	0.003	INTERGENIC
3L	2309845	3L_2309845_SNP [dm3] 3L_2309845_SNP [dm6]	G	T	6.172e^-7	0.003	INTERGENIC
X	9915645	X_9915645_SNP [dm3] X_10021612_SNP [dm6]	G	A	6.183e^-7	0.003	INTRON Cht6
3L	18283317	3L_18283317_SNP [dm3] 3L_18290217_SNP [dm6]	G	A	6.214e^-7	0.003	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	16189043	2L_16189043_SNP [dm3] 2L_16189043_SNP [dm6]	C	G	6.374e^-7	0.003	NON_SYNONYMOUS_CODING Ca-alpha1D UTR_3_PRIME Ca-alpha1D
2R	14962531	2R_14962531_SNP [dm3] 2R_19075026_SNP [dm6]	A	G	6.391e^-7	0.003	INTRON 5-HT1A
3R	17537158	3R_17537158_SNP [dm3] 3R_21711436_SNP [dm6]	T	A	6.391e^-7	0.003	INTRON CG31176
2L	15423096	2L_15423096_SNP [dm3] 2L_15423096_SNP [dm6]	C	T	6.473e^-7	0.003	DOWNSTREAM wor INTERGENIC
X	21869711	X_21869711_SNP [dm3] X_22467875_SNP [dm6]	A	G	6.474e^-7	0.003	INTRON CG14619
X	21858582	X_21858582_SNP [dm3] X_22456746_SNP [dm6]	A	T	6.479e^-7	0.003	UPSTREAM CG14619 INTRON CG14619	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	14601433	3L_14601433_SNP [dm3] 3L_14608333_SNP [dm6]	G	T	6.487e^-7	0.003	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	17880441	2L_17880441_SNP [dm3] 2L_17880441_SNP [dm6]	T	G	6.604e^-7	0.003	INTERGENIC
3R	13943378	3R_13943378_INS [dm3] 3R_18117656_INS [dm6]	G	GG	6.688e^-7	0.003	INTRON sr
2L	17031484	2L_17031484_SNP [dm3] 2L_17031484_SNP [dm6]	C	A	6.690e^-7	0.003	INTERGENIC
3R	19182891	3R_19182891_SNP [dm3] 3R_23357169_SNP [dm6]	A	T	6.745e^-7	0.003	INTRON Sec13	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10182435	3L_10182435_SNP [dm3] 3L_10189335_SNP [dm6]	C	A	6.815e^-7	0.004	DOWNSTREAM ect INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	10417782	3L_10417782_SNP [dm3] 3L_10424682_SNP [dm6]	G	C	7.003e^-7	0.004	INTERGENIC
3L	15750694	3L_15750694_SNP [dm3] 3L_15757594_SNP [dm6]	G	A	7.011e^-7	0.004	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11311532	2R_11311532_SNP [dm3] 2R_15424027_SNP [dm6]	T	C	7.035e^-7	0.004	NON_SYNONYMOUS_CODING CG30472 UPSTREAM CG43729 INTRON CG43729
2L	15426979	2L_15426979_SNP [dm3] 2L_15426979_SNP [dm6]	G	T	7.069e^-7	0.004	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16225216	2R_16225216_SNP [dm3] 2R_20337711_SNP [dm6]	T	G	7.069e^-7	0.004	INTERGENIC
3L	14217210	3L_14217210_SNP [dm3] 3L_14224110_SNP [dm6]	C	A	7.144e^-7	0.004	INTRON nuf
2L	3571169	2L_3571169_SNP [dm3] 2L_3571169_SNP [dm6]	A	T	7.159e^-7	0.004	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	17880443	2L_17880443_DEL [dm3] 2L_17880443_DEL [dm6]	TATATA	GCC	7.257e^-7	0.004	INTERGENIC
2R	15164353	2R_15164353_SNP [dm3] 2R_19276848_SNP [dm6]	T	C	7.324e^-7	0.004	INTRON rib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	15164373	2R_15164373_SNP [dm3] 2R_19276868_SNP [dm6]	C	T	7.324e^-7	0.004	INTRON rib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	18235752	3L_18235752_SNP [dm3] 3L_18242652_SNP [dm6]	T	G	7.608e^-7	0.004	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16190224	3L_16190224_SNP [dm3] 3L_16197124_SNP [dm6]	T	G	7.692e^-7	0.004	UPSTREAM CG33687 EXON CR45437
2L	19142046	2L_19142046_SNP [dm3] 2L_19142046_SNP [dm6]	T	C	7.704e^-7	0.004	INTRON brat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3987745	X_3987745_SNP [dm3] X_4093712_SNP [dm6]	T	A	7.816e^-7	0.004	INTERGENIC
3L	5823027	3L_5823027_SNP [dm3] 3L_5829927_SNP [dm6]	C	T	7.831e^-7	0.004	INTRON vn
3R	21194488	3R_21194488_SNP [dm3] 3R_25368766_SNP [dm6]	A	T	7.888e^-7	0.004	INTRON Fur1
3R	8616879	3R_8616879_SNP [dm3] 3R_12791157_SNP [dm6]	T	A	8.007e^-7	0.004	INTERGENIC
3R	14678909	3R_14678909_DEL [dm3] 3R_18853187_DEL [dm6]	CC	C	8.015e^-7	0.004	INTERGENIC
X	21869859	X_21869859_SNP [dm3] X_22468023_SNP [dm6]	T	C	8.019e^-7	0.004	INTRON CG14619
3R	21980529	3R_21980529_SNP [dm3] 3R_26154807_SNP [dm6]	C	T	8.055e^-7	0.004	INTERGENIC
2L	2734163	2L_2734163_SNP [dm3] 2L_2734163_SNP [dm6]	T	C	8.077e^-7	0.004	INTRON CG31689
2L	3265961	2L_3265961_SNP [dm3] 2L_3265961_SNP [dm6]	T	G	8.323e^-7	0.004	UPSTREAM CR45706 INTERGENIC
3R	13798733	3R_13798733_SNP [dm3] 3R_17973011_SNP [dm6]	T	A	8.362e^-7	0.004	INTRON cpo
3R	25121697	3R_25121697_SNP [dm3] 3R_29295975_SNP [dm6]	A	T	8.398e^-7	0.004	SYNONYMOUS_CODING CG14506
2R	16949527	2R_16949527_SNP [dm3] 2R_21062022_SNP [dm6]	G	A	8.470e^-7	0.004	SYNONYMOUS_CODING Cht8 DOWNSTREAM mRpL54	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13806193	2R_13806193_SNP [dm3] 2R_17918688_SNP [dm6]	G	A	8.558e^-7	0.004	INTRON Elk
3L	14037808	3L_14037808_SNP [dm3] 3L_14044708_SNP [dm6]	A	G	8.558e^-7	0.004	SYNONYMOUS_CODING blue	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4615462	3L_4615462_SNP [dm3] 3L_4615462_SNP [dm6]	A	T	8.558e^-7	0.004	INTRON Src64B
3R	6761248	3R_6761248_SNP [dm3] 3R_10935526_SNP [dm6]	G	C	8.558e^-7	0.004	INTERGENIC
X	4343771	X_4343771_SNP [dm3] X_4449738_SNP [dm6]	A	G	8.558e^-7	0.004	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14324935	2R_14324935_SNP [dm3] 2R_18437430_SNP [dm6]	C	T	8.576e^-7	0.004	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6318984	2L_6318984_SNP [dm3] 2L_6318984_SNP [dm6]	A	T	8.647e^-7	0.004	INTRON Ddr
2R	4200142	2R_4200142_SNP [dm3] 2R_8312637_SNP [dm6]	C	A	8.650e^-7	0.004	DOWNSTREAM CR44450 INTERGENIC
2L	10424258	2L_10424258_SNP [dm3] 2L_10424258_SNP [dm6]	T	C	8.674e^-7	0.004	INTRON CG5168
2L	5290031	2L_5290031_SNP [dm3] 2L_5290031_SNP [dm6]	A	T	8.791e^-7	0.004	INTRON vri	TF binding site BDTNP1_TFBS_dl
2L	17467234	2L_17467234_SNP [dm3] 2L_17467234_SNP [dm6]	C	T	8.896e^-7	0.004	INTRON BicD	TF binding site mE1_TFBS_inv
3R	11814717	3R_11814717_SNP [dm3] 3R_15988995_SNP [dm6]	C	T	8.904e^-7	0.004	INTRON srp & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14197188	2L_14197188_DEL [dm3] 2L_14197188_DEL [dm6]	TGTT	T	8.906e^-7	0.004	CODON_DELETION Dyrk2
3L	14096907	3L_14096907_INS [dm3] 3L_14103807_INS [dm6]	A	AAGTA	9.010e^-7	0.004	UTR_3_PRIME Sox21a
2L	17393054	2L_17393054_SNP [dm3] 2L_17393054_SNP [dm6]	G	A	9.016e^-7	0.004	INTRON CLIP-190
2R	4076882	2R_4076882_SNP [dm3] 2R_8189377_SNP [dm6]	G	T	9.128e^-7	0.004	INTRON LRP1
X	8533768	X_8533768_DEL [dm3] X_8639735_DEL [dm6]	AA	A	9.142e^-7	0.004	INTRON oc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18290511	3L_18290511_SNP [dm3] 3L_18297411_SNP [dm6]	A	T	9.146e^-7	0.004	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	16694281	3L_16694281_SNP [dm3] 3L_16701181_SNP [dm6]	G	A	9.232e^-7	0.004	INTRON Lasp & 1 other
2R	7908127	2R_7908127_SNP [dm3] 2R_12020622_SNP [dm6]	T	G	9.272e^-7	0.004	UPSTREAM otk INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
2L	10719136	2L_10719136_SNP [dm3] 2L_10719136_SNP [dm6]	C	T	9.290e^-7	0.004	INTERGENIC
3L	14743737	3L_14743737_SNP [dm3] 3L_14750637_SNP [dm6]	C	T	9.358e^-7	0.004	UTR_3_PRIME Trl DOWNSTREAM Trl INTRON Trl & 1 other	TF binding site BDTNP1_TFBS_sna
3L	14743765	3L_14743765_SNP [dm3] 3L_14750665_SNP [dm6]	G	A	9.358e^-7	0.004	UTR_3_PRIME Trl DOWNSTREAM Trl INTRON Trl & 1 other	TF binding site BDTNP1_TFBS_sna
3R	6869573	3R_6869573_SNP [dm3] 3R_11043851_SNP [dm6]	A	T	9.456e^-7	0.004	INTRON CG34114
3R	19175418	3R_19175418_SNP [dm3] 3R_23349696_SNP [dm6]	G	C	9.462e^-7	0.004	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	21868511	X_21868511_SNP [dm3] X_22466675_SNP [dm6]	G	A	9.526e^-7	0.004	UTR_5_PRIME CG14619 INTRON CG14619
3R	19175163	3R_19175163_SNP [dm3] 3R_23349441_SNP [dm6]	G	C	9.711e^-7	0.004	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16271848	2R_16271848_SNP [dm3] 2R_20384343_SNP [dm6]	G	T	1.009e^-6	0.005	INTERGENIC
X	4207789	X_4207789_SNP [dm3] X_4313756_SNP [dm6]	G	C	1.014e^-6	0.005	DOWNSTREAM mei-9 EXON CR44957
3R	21194557	3R_21194557_SNP [dm3] 3R_25368835_SNP [dm6]	C	T	1.023e^-6	0.005	INTRON Fur1
2L	13457922	2L_13457922_SNP [dm3] 2L_13457922_SNP [dm6]	A	G	1.024e^-6	0.005	NON_SYNONYMOUS_CODING CG42809 DOWNSTREAM CR45684 INTRON CG42784
3L	10904177	3L_10904177_SNP [dm3] 3L_10911077_SNP [dm6]	C	G	1.030e^-6	0.005	INTERGENIC
X	21875552	X_21875552_SNP [dm3] X_22473716_SNP [dm6]	G	A	1.031e^-6	0.005	UTR_5_PRIME CG14618	TF binding site BDTNP1_TFBS_dl
3L	4615453	3L_4615453_INS [dm3] 3L_4615453_INS [dm6]	C	CGCC	1.032e^-6	0.005	INTRON Src64B
X	21874197	X_21874197_DEL [dm3] X_22472361_DEL [dm6]	AA	A	1.034e^-6	0.005	UPSTREAM CG14613 INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3L	13933253	3L_13933253_INS [dm3] 3L_13940153_INS [dm6]	G	GGAG	1.038e^-6	0.005	INTRON CG32137
2R	12958030	2R_12958030_SNP [dm3] 2R_17070525_SNP [dm6]	C	A	1.047e^-6	0.005	SYNONYMOUS_CODING CG30460 INTRON CG30460	TF binding site mE1_TFBS_cad
X	21869103	X_21869103_SNP [dm3] X_22467267_SNP [dm6]	C	T	1.050e^-6	0.005	INTRON CG14619
2L	10552107	2L_10552107_SNP [dm3] 2L_10552107_SNP [dm6]	T	C	1.064e^-6	0.005	INTRON Trim9	TF binding site mE1_TFBS_cad
2R	18066920	2R_18066920_DEL [dm3] 2R_22179415_DEL [dm6]	TT	T	1.064e^-6	0.005	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	6316054	3L_6316054_SNP [dm3] 3L_6322954_SNP [dm6]	C	T	1.064e^-6	0.005	DOWNSTREAM Or65a INTERGENIC
2R	8159881	2R_8159881_DEL [dm3] 2R_12272376_DEL [dm6]	CTCAAGTGTTGCTGGTGCCG...	C	1.065e^-6	0.005	INTRON Cam
2L	11896079	2L_11896079_SNP [dm3] 2L_11896079_SNP [dm6]	C	G	1.068e^-6	0.005	INTRON Pde1c
3L	23412927	3L_23412927_SNP [dm3] 3L_23419827_SNP [dm6]	C	T	1.078e^-6	0.005	INTERGENIC	transposable element FlyBase
3R	9998469	3R_9998469_SNP [dm3] 3R_14172747_SNP [dm6]	G	A	1.085e^-6	0.005	UTR_3_PRIME Dop1R1
2L	17392965	2L_17392965_SNP [dm3] 2L_17392965_SNP [dm6]	T	C	1.089e^-6	0.005	INTRON CLIP-190
2L	14700490	2L_14700490_INS [dm3] 2L_14700490_INS [dm6]	A	TG	1.096e^-6	0.005	INTERGENIC
3R	13357270	3R_13357270_SNP [dm3] 3R_17531548_SNP [dm6]	C	A	1.098e^-6	0.005	DOWNSTREAM CG5823 INTERGENIC
X	21868400	X_21868400_SNP [dm3] X_22466564_SNP [dm6]	A	C	1.100e^-6	0.005	UTR_5_PRIME CG14619 INTRON CG14619
X	5154025	X_5154025_SNP [dm3] X_5259992_SNP [dm6]	C	A	1.108e^-6	0.005	INTERGENIC
2R	9928330	2R_9928330_SNP [dm3] 2R_14040825_SNP [dm6]	C	T	1.118e^-6	0.005	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	18280986	3L_18280986_SNP [dm3] 3L_18287886_SNP [dm6]	C	T	1.119e^-6	0.005	INTERGENIC
2L	3458075	2L_3458075_SNP [dm3] 2L_3458075_SNP [dm6]	C	A	1.121e^-6	0.005	SYNONYMOUS_CODING Sec5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	4066057	X_4066057_SNP [dm3] X_4172024_SNP [dm6]	C	T	1.122e^-6	0.005	INTRON Fas2
2L	6563524	2L_6563524_SNP [dm3] 2L_6563524_SNP [dm6]	C	A	1.123e^-6	0.005	SYNONYMOUS_CODING Ent2 DOWNSTREAM CG13766	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10835158	2L_10835158_SNP [dm3] 2L_10835158_SNP [dm6]	T	G	1.136e^-6	0.005	INTRON Nos
X	5862255	X_5862255_SNP [dm3] X_5968222_SNP [dm6]	T	A	1.142e^-6	0.005	INTRON Grip
3L	18281149	3L_18281149_SNP [dm3] 3L_18288049_SNP [dm6]	T	A	1.142e^-6	0.005	INTERGENIC
3L	10815997	3L_10815997_SNP [dm3] 3L_10822897_SNP [dm6]	T	C	1.146e^-6	0.005	INTERGENIC
2L	6583018	2L_6583018_SNP [dm3] 2L_6583018_SNP [dm6]	G	A	1.148e^-6	0.005	INTRON CG11319	TF binding site mE1_TFBS_chinmo
2L	13719392	2L_13719392_SNP [dm3] 2L_13719392_SNP [dm6]	G	T	1.168e^-6	0.005	INTERGENIC
2L	9253441	2L_9253441_SNP [dm3] 2L_9253441_SNP [dm6]	C	A	1.170e^-6	0.005	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	17682387	3R_17682387_SNP [dm3] 3R_21856665_SNP [dm6]	G	T	1.170e^-6	0.005	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9541263	2R_9541263_SNP [dm3] 2R_13653758_SNP [dm6]	G	T	1.185e^-6	0.005	INTRON fas
2L	20694923	2L_20694923_SNP [dm3] 2L_20694923_SNP [dm6]	G	T	1.187e^-6	0.005	INTRON Hr38
3R	19653550	3R_19653550_SNP [dm3] 3R_23827828_SNP [dm6]	G	A	1.220e^-6	0.005	UPSTREAM snRNA:U1:95Cb INTRON CG34355	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1040724	3L_1040724_SNP [dm3] 3L_1040724_SNP [dm6]	A	C	1.220e^-6	0.005	INTRON bab1
3L	1040725	3L_1040725_SNP [dm3] 3L_1040725_SNP [dm6]	G	T	1.220e^-6	0.005	INTRON bab1
3L	1040726	3L_1040726_INS [dm3] 3L_1040726_INS [dm6]	C	CTAGATT	1.220e^-6	0.005	INTRON bab1
3L	1040738	3L_1040738_INS [dm3] 3L_1040738_INS [dm6]	A	TGTG	1.220e^-6	0.005	INTRON bab1
3L	1040741	3L_1040741_SNP [dm3] 3L_1040741_SNP [dm6]	C	A	1.220e^-6	0.005	INTRON bab1
3L	1040743	3L_1040743_SNP [dm3] 3L_1040743_SNP [dm6]	T	A	1.220e^-6	0.005	INTRON bab1
3L	14428265	3L_14428265_SNP [dm3] 3L_14435165_SNP [dm6]	C	T	1.231e^-6	0.005	INTRON bbg
3L	15360944	3L_15360944_SNP [dm3] 3L_15367844_SNP [dm6]	C	T	1.241e^-6	0.005	INTERGENIC
3R	16290228	3R_16290228_SNP [dm3] 3R_20464506_SNP [dm6]	A	G	1.261e^-6	0.005	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	16290237	3R_16290237_SNP [dm3] 3R_20464515_SNP [dm6]	C	T	1.261e^-6	0.005	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	16290267	3R_16290267_SNP [dm3] 3R_20464545_SNP [dm6]	C	G	1.261e^-6	0.005	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	16290380	3R_16290380_SNP [dm3] 3R_20464658_SNP [dm6]	G	A	1.261e^-6	0.005	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	21194455	3R_21194455_SNP [dm3] 3R_25368733_SNP [dm6]	G	A	1.261e^-6	0.005	INTRON Fur1
3R	14930891	3R_14930891_SNP [dm3] 3R_19105169_SNP [dm6]	A	G	1.279e^-6	0.005	INTRON CG6040
2R	6738071	2R_6738071_DEL [dm3] 2R_10850566_DEL [dm6]	CACC	C	1.280e^-6	0.005	INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9838637	3L_9838637_SNP [dm3] 3L_9845537_SNP [dm6]	T	C	1.291e^-6	0.005	INTRON RasGAP1
2L	14700498	2L_14700498_SNP [dm3] 2L_14700498_SNP [dm6]	A	G	1.302e^-6	0.005	INTERGENIC
2L	14700496	2L_14700496_SNP [dm3] 2L_14700496_SNP [dm6]	T	A	1.303e^-6	0.005	INTERGENIC
2L	5251808	2L_5251808_SNP [dm3] 2L_5251808_SNP [dm6]	C	T	1.308e^-6	0.005	INTRON tkv
2L	5251810	2L_5251810_SNP [dm3] 2L_5251810_SNP [dm6]	A	C	1.308e^-6	0.005	INTRON tkv
2L	5251811	2L_5251811_SNP [dm3] 2L_5251811_SNP [dm6]	C	T	1.308e^-6	0.005	INTRON tkv
2R	18749953	2R_18749953_SNP [dm3] 2R_22862430_SNP [dm6]	G	A	1.325e^-6	0.005	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18832259	3R_18832259_SNP [dm3] 3R_23006537_SNP [dm6]	C	T	1.327e^-6	0.005	INTRON CG34375
3L	14533648	3L_14533648_SNP [dm3] 3L_14540548_SNP [dm6]	A	T	1.328e^-6	0.005	DOWNSTREAM CG9238 & 1 other INTERGENIC
2R	19709348	2R_19709348_SNP [dm3] 2R_23821825_SNP [dm6]	T	C	1.329e^-6	0.005	INTRON CG5549	TF binding site mE1_TFBS_chinmo
2R	17326607	2R_17326607_SNP [dm3] 2R_21439102_SNP [dm6]	G	C	1.341e^-6	0.005	INTRON Sdc
X	9207720	X_9207720_SNP [dm3] X_9313687_SNP [dm6]	A	T	1.345e^-6	0.005	UPSTREAM CR44534 INTERGENIC
X	4207737	X_4207737_SNP [dm3] X_4313704_SNP [dm6]	T	A	1.347e^-6	0.005	DOWNSTREAM mei-9 INTRON CR44957
2L	5250221	2L_5250221_SNP [dm3] 2L_5250221_SNP [dm6]	T	C	1.366e^-6	0.005	INTRON tkv	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	689481	3L_689481_SNP [dm3] 3L_689481_SNP [dm6]	C	T	1.366e^-6	0.005	SYNONYMOUS_CODING CG32483	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	689511	3L_689511_SNP [dm3] 3L_689511_SNP [dm6]	G	A	1.366e^-6	0.005	SYNONYMOUS_CODING CG32483	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	689514	3L_689514_SNP [dm3] 3L_689514_SNP [dm6]	T	G	1.366e^-6	0.005	SYNONYMOUS_CODING CG32483	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8376602	3L_8376602_SNP [dm3] 3L_8383502_SNP [dm6]	T	C	1.366e^-6	0.005	INTRON ImpE1	TF binding site mE1_TFBS_inv
3R	16318247	3R_16318247_SNP [dm3] 3R_20492525_SNP [dm6]	T	C	1.366e^-6	0.005	INTERGENIC
3L	9366329	3L_9366329_SNP [dm3] 3L_9373229_SNP [dm6]	G	A	1.378e^-6	0.005	SYNONYMOUS_CODING Hsp67Bb UTR_5_PRIME Hsp22 UPSTREAM Hsp67Bc & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13476077	X_13476077_SNP [dm3] X_13582044_SNP [dm6]	G	A	1.385e^-6	0.005	INTRON Tango13
3R	19174971	3R_19174971_SNP [dm3] 3R_23349249_SNP [dm6]	A	G	1.394e^-6	0.005	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14342323	2R_14342323_SNP [dm3] 2R_18454818_SNP [dm6]	T	A	1.398e^-6	0.005	UPSTREAM CG17669 INTERGENIC	TF binding site mE1_TFBS_cad
2L	5298411	2L_5298411_SNP [dm3] 2L_5298411_SNP [dm6]	C	T	1.400e^-6	0.005	UPSTREAM CR45730 INTRON vri
3R	15351957	3R_15351957_SNP [dm3] 3R_19526235_SNP [dm6]	C	A	1.407e^-6	0.005	SYNONYMOUS_CODING Dys INTRON Dys
3L	9838771	3L_9838771_SNP [dm3] 3L_9845671_SNP [dm6]	C	T	1.421e^-6	0.005	INTRON RasGAP1
2L	6408819	2L_6408819_SNP [dm3] 2L_6408819_SNP [dm6]	G	A	1.428e^-6	0.005	INTRON CG42368	TF binding site mE1_TFBS_inv
2L	6408830	2L_6408830_SNP [dm3] 2L_6408830_SNP [dm6]	G	A	1.428e^-6	0.005	INTRON CG42368	TF binding site mE1_TFBS_inv
2L	6408832	2L_6408832_SNP [dm3] 2L_6408832_SNP [dm6]	A	C	1.428e^-6	0.005	INTRON CG42368	TF binding site mE1_TFBS_inv
2L	6408860	2L_6408860_SNP [dm3] 2L_6408860_SNP [dm6]	C	A	1.428e^-6	0.005	INTRON CG42368	TF binding site mE1_TFBS_inv
3R	21320390	3R_21320390_SNP [dm3] 3R_25494668_SNP [dm6]	A	G	1.437e^-6	0.005	INTRON CG33494
3L	18935031	3L_18935031_SNP [dm3] 3L_18941931_SNP [dm6]	A	G	1.445e^-6	0.005	INTRON CG32204
3L	3017936	3L_3017936_SNP [dm3] 3L_3017936_SNP [dm6]	T	G	1.448e^-6	0.005	UPSTREAM CG32487 INTERGENIC
3L	12647785	3L_12647785_SNP [dm3] 3L_12654685_SNP [dm6]	C	T	1.468e^-6	0.005	INTERGENIC
3L	3385145	3L_3385145_SNP [dm3] 3L_3385145_SNP [dm6]	T	A	1.481e^-6	0.005	INTERGENIC
3R	9662648	3R_9662648_SNP [dm3] 3R_13836926_SNP [dm6]	C	G	1.481e^-6	0.005	INTRON Nsf2	TF binding site BDTNP1_TFBS_dl
X	16709490	X_16709490_SNP [dm3] X_16815457_SNP [dm6]	A	T	1.481e^-6	0.005	DOWNSTREAM CR44129 INTRON CG4829
3R	8578475	3R_8578475_SNP [dm3] 3R_12752753_SNP [dm6]	T	A	1.500e^-6	0.006	INTRON beat-Vc
3R	8578481	3R_8578481_SNP [dm3] 3R_12752759_SNP [dm6]	T	A	1.500e^-6	0.006	INTRON beat-Vc
2L	1951665	2L_1951665_SNP [dm3] 2L_1951665_SNP [dm6]	C	T	1.510e^-6	0.006	SYNONYMOUS_CODING erm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9839680	3L_9839680_SNP [dm3] 3L_9846580_SNP [dm6]	T	A	1.527e^-6	0.006	INTRON RasGAP1	TF binding site BDTNP1_TFBS_dl
2R	13231892	2R_13231892_SNP [dm3] 2R_17344387_SNP [dm6]	A	G	1.540e^-6	0.006	INTRON mbl
2L	19557170	2L_19557170_SNP [dm3] 2L_19557170_SNP [dm6]	C	T	1.550e^-6	0.006	UPSTREAM Tep5 DOWNSTREAM Tep4 INTERGENIC
3L	2733820	3L_2733820_SNP [dm3] 3L_2733820_SNP [dm6]	T	C	1.552e^-6	0.006	INTRON Mrtf
3L	2733827	3L_2733827_SNP [dm3] 3L_2733827_SNP [dm6]	C	T	1.552e^-6	0.006	INTRON Mrtf
2L	18349586	2L_18349586_SNP [dm3] 2L_18349586_SNP [dm6]	G	C	1.561e^-6	0.006	INTRON Fas3	TF binding site mE1_TFBS_inv
3R	18451508	3R_18451508_SNP [dm3] 3R_22625786_SNP [dm6]	G	T	1.561e^-6	0.006	INTRON loco	regulatory region REDfly_CRMs
3R	22509870	3R_22509870_SNP [dm3] 3R_26684148_SNP [dm6]	C	G	1.565e^-6	0.006	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9495926	2L_9495926_DEL [dm3] 2L_9495926_DEL [dm6]	AAA	A	1.590e^-6	0.006	UTR_5_PRIME CG33298 INTRON CG33298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
3L	5166827	3L_5166827_SNP [dm3] 3L_5173727_SNP [dm6]	C	A	1.594e^-6	0.006	INTRON shep
3L	18235050	3L_18235050_SNP [dm3] 3L_18241950_SNP [dm6]	T	C	1.605e^-6	0.006	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5249052	2L_5249052_SNP [dm3] 2L_5249052_SNP [dm6]	C	G	1.606e^-6	0.006	INTRON tkv	TF binding site mE1_TFBS_cnc
2L	5249137	2L_5249137_SNP [dm3] 2L_5249137_SNP [dm6]	T	C	1.606e^-6	0.006	INTRON tkv	TF binding site mE1_TFBS_cnc
2L	5249156	2L_5249156_SNP [dm3] 2L_5249156_SNP [dm6]	A	G	1.606e^-6	0.006	INTRON tkv	TF binding site mE1_TFBS_cnc
3L	9636484	3L_9636484_SNP [dm3] 3L_9643384_SNP [dm6]	A	C	1.630e^-6	0.006	UPSTREAM CG33696 INTRON fry
3R	5404414	3R_5404414_SNP [dm3] 3R_9578692_SNP [dm6]	A	G	1.638e^-6	0.006	SYNONYMOUS_CODING CG8273 UPSTREAM Kap-alpha3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15931008	2R_15931008_INS [dm3] 2R_20043503_INS [dm6]	T	TCT	1.640e^-6	0.006	INTERGENIC	TF binding site mE1_TFBS_cad
3R	17797706	3R_17797706_DEL [dm3] 3R_21971984_DEL [dm6]	GG	G	1.642e^-6	0.006	UPSTREAM Eip93F INTRON Eip93F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	26174731	3R_26174731_SNP [dm3] 3R_30349009_SNP [dm6]	C	A	1.651e^-6	0.006	INTRON hdc
2L	10872976	2L_10872976_SNP [dm3] 2L_10872976_SNP [dm6]	C	G	1.668e^-6	0.006	DOWNSTREAM CR45454 INTERGENIC
X	1409201	X_1409201_SNP [dm3] X_1515168_SNP [dm6]	C	A	1.685e^-6	0.006	INTRON inc
3R	15502204	3R_15502204_SNP [dm3] 3R_19676482_SNP [dm6]	A	C	1.711e^-6	0.006	INTRON Naam
3L	9839177	3L_9839177_DEL [dm3] 3L_9846077_DEL [dm6]	GCCCATATGTGTTTAGTATT...	G	1.722e^-6	0.006	INTRON RasGAP1	TF binding site BDTNP1_TFBS_dl
3R	19728255	3R_19728255_SNP [dm3] 3R_23902533_SNP [dm6]	C	T	1.729e^-6	0.006	INTRON sba
2L	6976977	2L_6976977_SNP [dm3] 2L_6976977_SNP [dm6]	C	T	1.731e^-6	0.006	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	10435996	X_10435996_SNP [dm3] X_10541963_SNP [dm6]	G	A	1.732e^-6	0.006	INTRON spri
2L	7170983	2L_7170983_DEL [dm3] 2L_7170983_DEL [dm6]	TGGGCGTCGGTGGAAAATTA...	T	1.732e^-6	0.006	INTERGENIC	insulator Insulator_Class_II.mE01
X	3419336	X_3419336_SNP [dm3] X_3525303_SNP [dm6]	C	T	1.754e^-6	0.006	INTRON CG32791
3L	7620281	3L_7620281_SNP [dm3] 3L_7627181_SNP [dm6]	A	G	1.757e^-6	0.006	INTRON CG33275
2R	14425204	2R_14425204_SNP [dm3] 2R_18537699_SNP [dm6]	C	T	1.759e^-6	0.006	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9405357	2L_9405357_SNP [dm3] 2L_9405357_SNP [dm6]	T	G	1.772e^-6	0.006	INTRON Shawl
3R	10203783	3R_10203783_SNP [dm3] 3R_14378061_SNP [dm6]	A	C	1.802e^-6	0.006	UPSTREAM CR44943 INTERGENIC	TF binding site mE1_TFBS_inv
3R	14220647	3R_14220647_SNP [dm3] 3R_18394925_SNP [dm6]	T	G	1.809e^-6	0.006	INTRON Vha100-2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14220648	3R_14220648_SNP [dm3] 3R_18394926_SNP [dm6]	C	G	1.809e^-6	0.006	INTRON Vha100-2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3792040	3L_3792040_SNP [dm3] 3L_3792040_SNP [dm6]	G	T	1.812e^-6	0.006	DOWNSTREAM CG32266 INTRON CG32264
3L	8446492	3L_8446492_SNP [dm3] 3L_8453392_SNP [dm6]	A	T	1.815e^-6	0.006	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5349625	3R_5349625_SNP [dm3] 3R_9523903_SNP [dm6]	C	T	1.826e^-6	0.006	INTRON CG8176	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9579458	3R_9579458_SNP [dm3] 3R_13753736_SNP [dm6]	T	C	1.831e^-6	0.006	SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	12903207	X_12903207_DEL [dm3] X_13009174_DEL [dm6]	AA	A	1.843e^-6	0.006	INTRON rad
3L	17627104	3L_17627104_SNP [dm3] 3L_17634004_SNP [dm6]	C	T	1.843e^-6	0.006	UPSTREAM CR44567 INTRON CG7497
3L	17627105	3L_17627105_SNP [dm3] 3L_17634005_SNP [dm6]	T	G	1.843e^-6	0.006	UPSTREAM CR44567 INTRON CG7497
X	1198883	X_1198883_SNP [dm3] X_1304850_SNP [dm6]	A	T	1.843e^-6	0.006	UPSTREAM DAAM INTRON DAAM
3R	19174218	3R_19174218_SNP [dm3] 3R_23348496_SNP [dm6]	G	A	1.844e^-6	0.006	INTRON DNApol-epsilon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_sens
3L	16664360	3L_16664360_SNP [dm3] 3L_16671260_SNP [dm6]	T	C	1.866e^-6	0.006	UPSTREAM CR45241 DOWNSTREAM zetaCOP INTERGENIC	TF binding site mE1_TFBS_cad
3L	16664362	3L_16664362_SNP [dm3] 3L_16671262_SNP [dm6]	C	A	1.866e^-6	0.006	UPSTREAM CR45241 DOWNSTREAM zetaCOP INTERGENIC	TF binding site mE1_TFBS_cad
3L	2740237	3L_2740237_SNP [dm3] 3L_2740237_SNP [dm6]	A	T	1.866e^-6	0.006	DOWNSTREAM Acp62F INTRON Mrtf
2L	21669066	2L_21669066_SNP [dm3] 2L_21669066_SNP [dm6]	C	G	1.868e^-6	0.006	NON_SYNONYMOUS_CODING CG2225	TF binding site mE1_TFBS_chinmo
X	864223	X_864223_SNP [dm3] X_970190_SNP [dm6]	G	A	1.869e^-6	0.006	INTERGENIC
2L	5290013	2L_5290013_SNP [dm3] 2L_5290013_SNP [dm6]	G	A	1.881e^-6	0.006	INTRON vri	TF binding site BDTNP1_TFBS_dl
3L	4437162	3L_4437162_SNP [dm3] 3L_4437162_SNP [dm6]	G	A	1.886e^-6	0.006	SYNONYMOUS_CODING CG15021	TF binding site mE1_TFBS_cad
3L	5398472	3L_5398472_SNP [dm3] 3L_5405372_SNP [dm6]	G	C	1.886e^-6	0.006	INTERGENIC
3L	5701778	3L_5701778_SNP [dm3] 3L_5708678_SNP [dm6]	T	A	1.886e^-6	0.006	INTRON sif
3L	820026	3L_820026_SNP [dm3] 3L_820026_SNP [dm6]	G	T	1.886e^-6	0.006	UPSTREAM CR43883 INTERGENIC
2L	5361301	2L_5361301_SNP [dm3] 2L_5361301_SNP [dm6]	T	A	1.916e^-6	0.006	INTRON nompC	TF binding site BDTNP1_TFBS_dl
2L	5248547	2L_5248547_SNP [dm3] 2L_5248547_SNP [dm6]	T	A	1.942e^-6	0.006	INTRON tkv
2R	14557297	2R_14557297_SNP [dm3] 2R_18669792_SNP [dm6]	A	C	1.942e^-6	0.006	INTRON edl
2L	16064793	2L_16064793_SNP [dm3] 2L_16064793_SNP [dm6]	G	A	1.946e^-6	0.006	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
2L	16064814	2L_16064814_SNP [dm3] 2L_16064814_SNP [dm6]	C	T	1.946e^-6	0.006	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
3L	13699619	3L_13699619_SNP [dm3] 3L_13706519_SNP [dm6]	A	T	1.946e^-6	0.006	INTRON bru-3
3L	13699623	3L_13699623_MNP [dm3] 3L_13706523_MNP [dm6]	TAT	CCA	1.946e^-6	0.006	INTRON bru-3
2R	4207032	2R_4207032_SNP [dm3] 2R_8319527_SNP [dm6]	A	G	1.961e^-6	0.006	INTERGENIC
3L	7745731	3L_7745731_SNP [dm3] 3L_7752631_SNP [dm6]	T	C	1.963e^-6	0.006	INTRON CG32373
2R	2012591	2R_2012591_SNP [dm3] 2R_6125086_SNP [dm6]	C	T	1.988e^-6	0.006	INTRON EcR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	15782472	3L_15782472_SNP [dm3] 3L_15789372_SNP [dm6]	T	C	1.991e^-6	0.006	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	1840227	2L_1840227_INS [dm3] 2L_1840227_INS [dm6]	T	TTTCCATTT	1.995e^-6	0.006	UPSTREAM CR44073 INTRON wry EXON CR44074
3R	15544543	3R_15544543_SNP [dm3] 3R_19718821_SNP [dm6]	T	A	2.021e^-6	0.007	INTERGENIC	transposable element FlyBase
2R	10873031	2R_10873031_SNP [dm3] 2R_14985526_SNP [dm6]	T	A	2.036e^-6	0.007	INTRON pcs	TF binding site mE1_TFBS_cad
2L	655258	2L_655258_SNP [dm3] 2L_655258_SNP [dm6]	C	A	2.038e^-6	0.007	INTRON ds
3R	7913330	3R_7913330_SNP [dm3] 3R_12087608_SNP [dm6]	C	G	2.038e^-6	0.007	INTRON CG14741
3R	5403704	3R_5403704_SNP [dm3] 3R_9577982_SNP [dm6]	T	C	2.041e^-6	0.007	UPSTREAM CG8273 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	18841738	2R_18841738_SNP [dm3] 2R_22954215_SNP [dm6]	A	T	2.041e^-6	0.007	UPSTREAM CR32835 INTERGENIC
2R	18841764	2R_18841764_SNP [dm3] 2R_22954241_SNP [dm6]	A	T	2.041e^-6	0.007	UPSTREAM CR32835 INTERGENIC
2R	18841766	2R_18841766_SNP [dm3] 2R_22954243_SNP [dm6]	A	G	2.041e^-6	0.007	UPSTREAM CR32835 INTERGENIC
3R	21767353	3R_21767353_SNP [dm3] 3R_25941631_SNP [dm6]	C	T	2.064e^-6	0.007	UTR_5_PRIME CCAP-R
2L	3473334	2L_3473334_SNP [dm3] 2L_3473334_SNP [dm6]	A	T	2.071e^-6	0.007	DOWNSTREAM CG31776 INTRON pgant4	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	10210968	2L_10210968_SNP [dm3] 2L_10210968_SNP [dm6]	T	C	2.078e^-6	0.007	UPSTREAM CG4901 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2L	17880467	2L_17880467_SNP [dm3] 2L_17880467_SNP [dm6]	T	A	2.081e^-6	0.007	INTERGENIC
2L	17880468	2L_17880468_SNP [dm3] 2L_17880468_SNP [dm6]	T	A	2.081e^-6	0.007	INTERGENIC
2L	17880470	2L_17880470_SNP [dm3] 2L_17880470_SNP [dm6]	T	A	2.081e^-6	0.007	INTERGENIC
3L	11131447	3L_11131447_DEL [dm3] 3L_11138347_DEL [dm6]	CAACTTTATC	C	2.090e^-6	0.007	INTRON CG32082
3R	5933523	3R_5933523_SNP [dm3] 3R_10107801_SNP [dm6]	G	T	2.094e^-6	0.007	INTRON Fmr1	TF binding site BDTNP1_TFBS_da
3R	26122270	3R_26122270_SNP [dm3] 3R_30296548_SNP [dm6]	C	T	2.139e^-6	0.007	INTRON hdc
2R	17919986	2R_17919986_SNP [dm3] 2R_22032481_SNP [dm6]	T	C	2.152e^-6	0.007	INTRON CG34370
2R	17919988	2R_17919988_SNP [dm3] 2R_22032483_SNP [dm6]	T	C	2.152e^-6	0.007	INTRON CG34370
2R	7684397	2R_7684397_SNP [dm3] 2R_11796892_SNP [dm6]	C	G	2.153e^-6	0.007	INTRON ths	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	8923510	2R_8923510_SNP [dm3] 2R_13036005_SNP [dm6]	G	T	2.176e^-6	0.007	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21321730	3R_21321730_SNP [dm3] 3R_25496008_SNP [dm6]	T	C	2.214e^-6	0.007	UPSTREAM CG33494 DOWNSTREAM CR44948 INTERGENIC
3L	5701776	3L_5701776_SNP [dm3] 3L_5708676_SNP [dm6]	A	T	2.222e^-6	0.007	INTRON sif
3R	9661215	3R_9661215_SNP [dm3] 3R_13835493_SNP [dm6]	T	C	2.227e^-6	0.007	SYNONYMOUS_CODING Nsf2
3L	4438149	3L_4438149_SNP [dm3] 3L_4438149_SNP [dm6]	C	G	2.251e^-6	0.007	SYNONYMOUS_CODING CG15021	TF binding site mE1_TFBS_cad
2L	6396383	2L_6396383_SNP [dm3] 2L_6396383_SNP [dm6]	C	T	2.256e^-6	0.007	SYNONYMOUS_CODING CG42369 INTRON CG42368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17198781	3L_17198781_SNP [dm3] 3L_17205681_SNP [dm6]	T	A	2.289e^-6	0.007	INTRON Rbp6
3L	17198792	3L_17198792_SNP [dm3] 3L_17205692_SNP [dm6]	T	A	2.289e^-6	0.007	INTRON Rbp6
3L	20348903	3L_20348903_SNP [dm3] 3L_20355803_SNP [dm6]	A	C	2.291e^-6	0.007	SYNONYMOUS_CODING CG5618	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6375994	3R_6375994_SNP [dm3] 3R_10550272_SNP [dm6]	T	G	2.291e^-6	0.007	INTRON hth
3R	13541697	3R_13541697_SNP [dm3] 3R_17715975_SNP [dm6]	A	G	2.300e^-6	0.007	SYNONYMOUS_CODING osa	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	13927014	2R_13927014_SNP [dm3] 2R_18039509_SNP [dm6]	G	A	2.312e^-6	0.007	INTERGENIC
X	7747612	X_7747612_SNP [dm3] X_7853579_SNP [dm6]	G	A	2.322e^-6	0.007	SYNONYMOUS_CODING CG10920	TF binding site mE1_TFBS_chinmo
X	8004843	X_8004843_INS [dm3] X_8110810_INS [dm6]	T	TATT	2.337e^-6	0.007	INTRON Gclc
3R	21329766	3R_21329766_SNP [dm3] 3R_25504044_SNP [dm6]	T	C	2.338e^-6	0.007	DOWNSTREAM CR43457 EXON CR45651	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21329768	3R_21329768_SNP [dm3] 3R_25504046_SNP [dm6]	C	T	2.338e^-6	0.007	DOWNSTREAM CR43457 EXON CR45651	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20424256	X_20424256_SNP [dm3] X_20553229_SNP [dm6]	G	C	2.341e^-6	0.007	INTRON RunxB
2R	12900698	2R_12900698_SNP [dm3] 2R_17013193_SNP [dm6]	C	A	2.343e^-6	0.007	INTRON Ehbp1
2R	15010599	2R_15010599_SNP [dm3] 2R_19123094_SNP [dm6]	T	C	2.343e^-6	0.007	SPLICE_SITE_REGION CG15117 INTRON CG15117
3L	18331837	3L_18331837_SNP [dm3] 3L_18338737_SNP [dm6]	C	G	2.357e^-6	0.007	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
X	5996137	X_5996137_SNP [dm3] X_6102104_SNP [dm6]	C	G	2.364e^-6	0.007	SYNONYMOUS_CODING Nep1	TF binding site mE1_TFBS_chinmo
2R	14014526	2R_14014526_SNP [dm3] 2R_18127021_SNP [dm6]	G	A	2.364e^-6	0.007	SYNONYMOUS_CODING Spn55B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7908203	2R_7908203_SNP [dm3] 2R_12020698_SNP [dm6]	G	T	2.368e^-6	0.007	UPSTREAM otk INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
3R	15031976	3R_15031976_SNP [dm3] 3R_19206254_SNP [dm6]	C	A	2.372e^-6	0.007	INTERGENIC
2R	7908130	2R_7908130_INS [dm3] 2R_12020625_INS [dm6]	T	GC	2.378e^-6	0.007	UPSTREAM otk INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
3R	21199252	3R_21199252_SNP [dm3] 3R_25373530_SNP [dm6]	C	T	2.379e^-6	0.007	INTRON Fur1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21199262	3R_21199262_SNP [dm3] 3R_25373540_SNP [dm6]	A	C	2.379e^-6	0.007	INTRON Fur1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21199409	3R_21199409_SNP [dm3] 3R_25373687_SNP [dm6]	A	G	2.379e^-6	0.007	INTRON Fur1
2L	16064824	2L_16064824_SNP [dm3] 2L_16064824_SNP [dm6]	T	G	2.387e^-6	0.007	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
3R	15509853	3R_15509853_SNP [dm3] 3R_19684131_SNP [dm6]	A	C	2.387e^-6	0.007	INTRON Naam
2R	7563711	2R_7563711_INS [dm3] 2R_11676206_INS [dm6]	T	TCCTATT	2.388e^-6	0.007	SPLICE_SITE_REGION Tret1-2 INTRON Roc2 & 1 other	TF binding site mE1_TFBS_cad
2L	2728032	2L_2728032_SNP [dm3] 2L_2728032_SNP [dm6]	A	G	2.400e^-6	0.007	INTRON CG31689
3R	9498886	3R_9498886_SNP [dm3] 3R_13673164_SNP [dm6]	C	A	2.406e^-6	0.007	UTR_5_PRIME Task6 INTRON Task6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
2L	13457915	2L_13457915_SNP [dm3] 2L_13457915_SNP [dm6]	A	G	2.437e^-6	0.007	NON_SYNONYMOUS_CODING CG42809 DOWNSTREAM CR45684 INTRON CG42784
3R	24495726	3R_24495726_SNP [dm3] 3R_28670004_SNP [dm6]	C	T	2.439e^-6	0.007	SYNONYMOUS_CODING CG33346 UPSTREAM CG9989
3R	16253639	3R_16253639_INS [dm3] 3R_20427917_INS [dm6]	T	TT	2.442e^-6	0.007	INTRON Gfrl
3L	12090762	3L_12090762_INS [dm3] 3L_12097662_INS [dm6]	A	AT	2.444e^-6	0.007	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2661754	3L_2661754_SNP [dm3] 3L_2661754_SNP [dm6]	C	T	2.454e^-6	0.007	SPLICE_SITE_REGION CG33234 DOWNSTREAM CG33233 INTRON Fife & 1 other
3L	2538545	3L_2538545_INS [dm3] 3L_2538545_INS [dm6]	T	TG	2.467e^-6	0.007	INTRON Spn
2L	5248520	2L_5248520_SNP [dm3] 2L_5248520_SNP [dm6]	T	C	2.472e^-6	0.007	INTRON tkv
2R	7563809	2R_7563809_SNP [dm3] 2R_11676304_SNP [dm6]	G	A	2.474e^-6	0.007	SYNONYMOUS_CODING Tret1-2 INTRON Roc2	TF binding site mE1_TFBS_cad
2R	18841780	2R_18841780_SNP [dm3] 2R_22954257_SNP [dm6]	G	A	2.499e^-6	0.007	UPSTREAM CR32835 INTERGENIC
3L	3017964	3L_3017964_SNP [dm3] 3L_3017964_SNP [dm6]	A	T	2.501e^-6	0.007	UPSTREAM CG32487 INTERGENIC
2L	10210973	2L_10210973_SNP [dm3] 2L_10210973_SNP [dm6]	A	G	2.523e^-6	0.007	UPSTREAM CG4901 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3L	15359270	3L_15359270_INS [dm3] 3L_15366170_INS [dm6]	G	GTATTTTGTTACATTTTGCG...	2.526e^-6	0.007	INTERGENIC
2R	17647021	2R_17647021_SNP [dm3] 2R_21759516_SNP [dm6]	G	A	2.527e^-6	0.007	INTERGENIC
2L	17031485	2L_17031485_SNP [dm3] 2L_17031485_SNP [dm6]	T	A	2.542e^-6	0.007	INTERGENIC
2L	2332995	2L_2332995_SNP [dm3] 2L_2332995_SNP [dm6]	T	G	2.549e^-6	0.007	INTRON CG9967 & 1 other
3L	1753611	3L_1753611_SNP [dm3] 3L_1753611_SNP [dm6]	T	A	2.549e^-6	0.007	NON_SYNONYMOUS_CODING Cht2	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4496038	3L_4496038_SNP [dm3] 3L_4496038_SNP [dm6]	C	T	2.549e^-6	0.007	DOWNSTREAM CG13721 INTERGENIC
3R	25781294	3R_25781294_SNP [dm3] 3R_29955572_SNP [dm6]	G	C	2.549e^-6	0.007	INTRON TkR99D
X	7999105	X_7999105_SNP [dm3] X_8105072_SNP [dm6]	C	T	2.549e^-6	0.007	SYNONYMOUS_CODING Gclc	TF binding site mE1_TFBS_chinmo
3L	4614055	3L_4614055_SNP [dm3] 3L_4614055_SNP [dm6]	C	A	2.550e^-6	0.007	UPSTREAM Src64B INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	5973924	X_5973924_SNP [dm3] X_6079891_SNP [dm6]	A	G	2.576e^-6	0.007	INTRON CG4660
X	5973930	X_5973930_SNP [dm3] X_6079897_SNP [dm6]	T	G	2.576e^-6	0.007	INTRON CG4660
2L	12110011	2L_12110011_SNP [dm3] 2L_12110011_SNP [dm6]	C	G	2.617e^-6	0.008	SYNONYMOUS_CODING Phae1 UPSTREAM Rab6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18023280	3R_18023280_SNP [dm3] 3R_22197558_SNP [dm6]	T	A	2.635e^-6	0.008	INTRON SKIP & 1 other	TF binding site mE1_TFBS_cad
X	21656823	X_21656823_SNP [dm3] X_21785796_SNP [dm6]	A	C	2.638e^-6	0.008	INTERGENIC
2L	11971519	2L_11971519_DEL [dm3] 2L_11971519_DEL [dm6]	ATCCAAG	A	2.645e^-6	0.008	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	13350330	3L_13350330_SNP [dm3] 3L_13357230_SNP [dm6]	A	G	2.678e^-6	0.008	DOWNSTREAM Nplp2 INTERGENIC
3R	23081744	3R_23081744_SNP [dm3] 3R_27256022_SNP [dm6]	C	T	2.678e^-6	0.008	DOWNSTREAM woc INTRON TfIIA-L	TF binding site BDTNP1_TFBS_z
3L	18183589	3L_18183589_DEL [dm3] 3L_18190489_DEL [dm6]	CTTCCC	C	2.706e^-6	0.008	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	4437843	3L_4437843_SNP [dm3] 3L_4437843_SNP [dm6]	A	G	2.719e^-6	0.008	SYNONYMOUS_CODING CG15021	TF binding site mE1_TFBS_cad
3L	12046359	3L_12046359_SNP [dm3] 3L_12053259_SNP [dm6]	C	T	2.733e^-6	0.008	INTRON rols
3R	26478780	3R_26478780_SNP [dm3] 3R_30653058_SNP [dm6]	G	T	2.734e^-6	0.008	INTERGENIC
3R	24495588	3R_24495588_SNP [dm3] 3R_28669866_SNP [dm6]	T	C	2.781e^-6	0.008	SYNONYMOUS_CODING CG33346 UPSTREAM CG9989
2R	16165674	2R_16165674_SNP [dm3] 2R_20278169_SNP [dm6]	G	A	2.784e^-6	0.008	SYNONYMOUS_CODING CG9143 DOWNSTREAM CG9090	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7684575	2R_7684575_DEL [dm3] 2R_11797070_DEL [dm6]	TGA	G	2.800e^-6	0.008	INTRON ths	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
2R	7684724	2R_7684724_SNP [dm3] 2R_11797219_SNP [dm6]	C	G	2.800e^-6	0.008	INTRON ths	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	7908102	2R_7908102_SNP [dm3] 2R_12020597_SNP [dm6]	G	A	2.806e^-6	0.008	UPSTREAM otk INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
2R	7908121	2R_7908121_SNP [dm3] 2R_12020616_SNP [dm6]	G	A	2.806e^-6	0.008	UPSTREAM otk INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
2R	15046506	2R_15046506_SNP [dm3] 2R_19159001_SNP [dm6]	C	T	2.807e^-6	0.008	SYNONYMOUS_CODING ena
3L	15357968	3L_15357968_SNP [dm3] 3L_15364868_SNP [dm6]	A	T	2.814e^-6	0.008	INTERGENIC
3L	17198782	3L_17198782_SNP [dm3] 3L_17205682_SNP [dm6]	C	A	2.818e^-6	0.008	INTRON Rbp6
3L	9806771	3L_9806771_SNP [dm3] 3L_9813671_SNP [dm6]	T	A	2.827e^-6	0.008	UPSTREAM CG43897 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	21980745	3R_21980745_SNP [dm3] 3R_26155023_SNP [dm6]	G	C	2.835e^-6	0.008	INTERGENIC
3L	14710206	3L_14710206_SNP [dm3] 3L_14717106_SNP [dm6]	G	A	2.848e^-6	0.008	INTRON ome	regulatory region REDfly_CRMs
2L	12153163	2L_12153163_SNP [dm3] 2L_12153163_SNP [dm6]	C	G	2.883e^-6	0.008	INTRON CG31760
3L	14601254	3L_14601254_SNP [dm3] 3L_14608154_SNP [dm6]	C	A	2.926e^-6	0.008	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	2613444	3L_2613444_SNP [dm3] 3L_2613444_SNP [dm6]	T	C	2.926e^-6	0.008	INTRON Pxn
X	2967666	X_2967666_SNP [dm3] X_3073633_SNP [dm6]	G	A	2.926e^-6	0.008	INTRON kirre
2L	9992017	2L_9992017_SNP [dm3] 2L_9992017_SNP [dm6]	T	G	2.928e^-6	0.008	INTRON bib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	9459028	2L_9459028_SNP [dm3] 2L_9459028_SNP [dm6]	G	A	2.930e^-6	0.008	INTRON numb
2R	14921504	2R_14921504_SNP [dm3] 2R_19033999_SNP [dm6]	G	A	2.949e^-6	0.008	INTERGENIC
3R	12928249	3R_12928249_SNP [dm3] 3R_17102527_SNP [dm6]	G	A	2.984e^-6	0.008	INTRON cher
3L	14600982	3L_14600982_SNP [dm3] 3L_14607882_SNP [dm6]	A	T	3.020e^-6	0.008	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	14217072	3L_14217072_SNP [dm3] 3L_14223972_SNP [dm6]	T	C	3.039e^-6	0.008	INTRON nuf
2R	2420786	2R_2420786_SNP [dm3] 2R_6533281_SNP [dm6]	A	G	3.041e^-6	0.008	INTRON jing EXON CR43905	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21870031	X_21870031_SNP [dm3] X_22468195_SNP [dm6]	G	A	3.043e^-6	0.008	UTR_3_PRIME CG14619
X	21870100	X_21870100_SNP [dm3] X_22468264_SNP [dm6]	A	G	3.043e^-6	0.008	UTR_3_PRIME CG14619
2R	12675786	2R_12675786_SNP [dm3] 2R_16788281_SNP [dm6]	C	T	3.070e^-6	0.008	INTRON CG5522
3L	3791013	3L_3791013_INS [dm3] 3L_3791013_INS [dm6]	C	CTTCATTATTT...	3.086e^-6	0.008	INTRON CG32264 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15360411	3L_15360411_SNP [dm3] 3L_15367311_SNP [dm6]	G	A	3.110e^-6	0.008	INTERGENIC
2L	10875554	2L_10875554_SNP [dm3] 2L_10875554_SNP [dm6]	G	A	3.133e^-6	0.008	INTERGENIC
3R	21195628	3R_21195628_SNP [dm3] 3R_25369906_SNP [dm6]	G	T	3.134e^-6	0.008	INTRON Fur1
2R	17409495	2R_17409495_SNP [dm3] 2R_21521990_SNP [dm6]	T	A	3.180e^-6	0.009	UPSTREAM Egfr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_Trl
2R	17409500	2R_17409500_SNP [dm3] 2R_21521995_SNP [dm6]	T	A	3.180e^-6	0.009	UPSTREAM Egfr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_Trl
3R	22988015	3R_22988015_SNP [dm3] 3R_27162293_SNP [dm6]	A	C	3.208e^-6	0.009	SYNONYMOUS_CODING CG5909 UPSTREAM ppk31
2L	5815549	2L_5815549_SNP [dm3] 2L_5815549_SNP [dm6]	T	A	3.213e^-6	0.009	INTERGENIC
3R	23969408	3R_23969408_SNP [dm3] 3R_28143686_SNP [dm6]	G	A	3.215e^-6	0.009	INTERGENIC
X	12503427	X_12503427_DEL [dm3] X_12609394_DEL [dm6]	AA	A	3.228e^-6	0.009	UTR_3_PRIME Sec16 DOWNSTREAM CG1463
X	4595202	X_4595202_DEL [dm3] X_4701169_DEL [dm6]	CTCAGCACGTTTTTGC...	C	3.231e^-6	0.009	UTR_3_PRIME ctp	TF binding site BDTNP1_TFBS_dl
2R	15046491	2R_15046491_SNP [dm3] 2R_19158986_SNP [dm6]	T	C	3.260e^-6	0.009	SYNONYMOUS_CODING ena	TF binding site mE1_TFBS_inv
2L	4571193	2L_4571193_SNP [dm3] 2L_4571193_SNP [dm6]	T	C	3.283e^-6	0.009	INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5290905	2L_5290905_SNP [dm3] 2L_5290905_SNP [dm6]	A	G	3.288e^-6	0.009	INTRON vri
2R	14602888	2R_14602888_SNP [dm3] 2R_18715383_SNP [dm6]	G	C	3.293e^-6	0.009	INTERGENIC
3L	10475786	3L_10475786_SNP [dm3] 3L_10482686_SNP [dm6]	T	A	3.308e^-6	0.009	INTRON A2bp1
3R	15300848	3R_15300848_SNP [dm3] 3R_19475126_SNP [dm6]	G	A	3.332e^-6	0.009	INTRON Dys
2R	17075561	2R_17075561_SNP [dm3] 2R_21188056_SNP [dm6]	G	A	3.332e^-6	0.009	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
X	20933984	X_20933984_SNP [dm3] X_21062957_SNP [dm6]	C	A	3.340e^-6	0.009	UTR_3_PRIME CG32512 INTRON bves
2L	5812252	2L_5812252_SNP [dm3] 2L_5812252_SNP [dm6]	A	T	3.390e^-6	0.009	DOWNSTREAM CG43307 INTERGENIC
X	4687048	X_4687048_SNP [dm3] X_4793015_SNP [dm6]	G	T	3.393e^-6	0.009	INTERGENIC
2L	1830017	2L_1830017_SNP [dm3] 2L_1830017_SNP [dm6]	A	G	3.424e^-6	0.009	INTERGENIC
3L	9384717	3L_9384717_SNP [dm3] 3L_9391617_SNP [dm6]	G	T	3.424e^-6	0.009	INTRON CG4080	TF binding site BDTNP1_TFBS_dl
3L	10330921	3L_10330921_SNP [dm3] 3L_10337821_SNP [dm6]	T	C	3.431e^-6	0.009	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13230907	2R_13230907_INS [dm3] 2R_17343402_INS [dm6]	A	AA	3.453e^-6	0.009	INTRON mbl
X	21869716	X_21869716_SNP [dm3] X_22467880_SNP [dm6]	T	A	3.457e^-6	0.009	INTRON CG14619
3R	17297900	3R_17297900_SNP [dm3] 3R_21472178_SNP [dm6]	C	A	3.505e^-6	0.009	INTERGENIC
3L	15896359	3L_15896359_SNP [dm3] 3L_15903259_SNP [dm6]	C	T	3.515e^-6	0.009	UTR_3_PRIME sff
X	21867619	X_21867619_SNP [dm3] X_22465783_SNP [dm6]	T	C	3.519e^-6	0.009	UPSTREAM CG14619 INTRON CG14619
3L	14612137	3L_14612137_SNP [dm3] 3L_14619037_SNP [dm6]	T	A	3.539e^-6	0.009	UPSTREAM shd INTRON shd
2R	7684638	2R_7684638_SNP [dm3] 2R_11797133_SNP [dm6]	C	A	3.546e^-6	0.009	INTRON ths	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_sens
3L	13853716	3L_13853716_SNP [dm3] 3L_13860616_SNP [dm6]	C	G	3.553e^-6	0.009	UTR_3_PRIME CG8745 DOWNSTREAM Hml	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo
2L	5290810	2L_5290810_DEL [dm3] 2L_5290810_DEL [dm6]	TTGCTCTTTAT...	T	3.588e^-6	0.009	INTRON vri
X	9915493	X_9915493_SNP [dm3] X_10021460_SNP [dm6]	A	G	3.598e^-6	0.009	INTRON Cht6
2L	1029449	2L_1029449_INS [dm3] 2L_1029449_INS [dm6]	T	TAAATAAATTCAGAAACATT...	3.601e^-6	0.009	INTRON IA-2
3R	11965623	3R_11965623_SNP [dm3] 3R_16139901_SNP [dm6]	T	C	3.603e^-6	0.009	INTRON Sb	TF binding site mE1_TFBS_chinmo
2R	4205941	2R_4205941_SNP [dm3] 2R_8318436_SNP [dm6]	T	A	3.619e^-6	0.009	INTERGENIC
2L	1400817	2L_1400817_SNP [dm3] 2L_1400817_SNP [dm6]	A	C	3.630e^-6	0.009	INTRON lea
3L	5827494	3L_5827494_SNP [dm3] 3L_5834394_SNP [dm6]	G	T	3.643e^-6	0.009	INTRON vn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	5827518	3L_5827518_SNP [dm3] 3L_5834418_SNP [dm6]	A	C	3.643e^-6	0.009	INTRON vn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	24372732	3R_24372732_DEL [dm3] 3R_28547010_DEL [dm6]	CTTTGGCCGGCTAATCCGTT...	TTAAT	3.670e^-6	0.009	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	5744499	2L_5744499_SNP [dm3] 2L_5744499_SNP [dm6]	C	T	3.670e^-6	0.009	INTRON CG11030
3R	13554164	3R_13554164_SNP [dm3] 3R_17728442_SNP [dm6]	C	T	3.676e^-6	0.009	SYNONYMOUS_CODING Lgr1
3R	14215570	3R_14215570_SNP [dm3] 3R_18389848_SNP [dm6]	A	T	3.682e^-6	0.009	UPSTREAM Vha100-4 DOWNSTREAM Vha100-2 INTERGENIC	TF binding site mE1_TFBS_cad
3L	14560359	3L_14560359_SNP [dm3] 3L_14567259_SNP [dm6]	A	T	3.712e^-6	0.009	UPSTREAM CG42758 INTERGENIC
2R	17571306	2R_17571306_SNP [dm3] 2R_21683801_SNP [dm6]	G	A	3.739e^-6	0.01	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21454016	3L_21454016_SNP [dm3] 3L_21460916_SNP [dm6]	C	G	3.750e^-6	0.01	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	15359406	3L_15359406_SNP [dm3] 3L_15366306_SNP [dm6]	G	A	3.762e^-6	0.01	INTERGENIC
3L	14216612	3L_14216612_SNP [dm3] 3L_14223512_SNP [dm6]	T	C	3.773e^-6	0.01	INTRON nuf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4672437	2L_4672437_SNP [dm3] 2L_4672437_SNP [dm6]	A	G	3.802e^-6	0.01	INTERGENIC
3L	16896411	3L_16896411_SNP [dm3] 3L_16903311_SNP [dm6]	C	T	3.807e^-6	0.01	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt
3R	15505362	3R_15505362_SNP [dm3] 3R_19679640_SNP [dm6]	G	A	3.807e^-6	0.01	INTRON Naam
3R	15506269	3R_15506269_SNP [dm3] 3R_19680547_SNP [dm6]	A	T	3.807e^-6	0.01	INTRON Naam
3R	15506965	3R_15506965_SNP [dm3] 3R_19681243_SNP [dm6]	G	T	3.807e^-6	0.01	INTRON Naam
3R	18510096	3R_18510096_SNP [dm3] 3R_22684374_SNP [dm6]	T	C	3.807e^-6	0.01	DOWNSTREAM CG45058 & 1 other INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	3266150	2L_3266150_SNP [dm3] 2L_3266150_SNP [dm6]	T	A	3.824e^-6	0.01	UPSTREAM CR45706 INTERGENIC
3L	18951412	3L_18951412_SNP [dm3] 3L_18958312_SNP [dm6]	T	G	3.870e^-6	0.01	INTERGENIC
2L	20712233	2L_20712233_SNP [dm3] 2L_20712233_SNP [dm6]	T	A	3.899e^-6	0.01	INTRON Hr38 EXON CR44188	TF binding site BDTNP1_TFBS_Med
3R	26638538	3R_26638538_SNP [dm3] 3R_30812816_SNP [dm6]	C	T	3.915e^-6	0.01	INTRON cindr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7060209	2L_7060209_SNP [dm3] 2L_7060209_SNP [dm6]	G	A	3.946e^-6	0.01	SYNONYMOUS_CODING CG31907 DOWNSTREAM Mnn1 INTRON Mnn1	TF binding site mE1_TFBS_HSA
X	13987417	X_13987417_SNP [dm3] X_14093384_SNP [dm6]	T	C	3.952e^-6	0.01	INTERGENIC
2R	12665711	2R_12665711_SNP [dm3] 2R_16778206_SNP [dm6]	G	A	3.962e^-6	0.01	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15151548	2R_15151548_SNP [dm3] 2R_19264043_SNP [dm6]	C	A	3.985e^-6	0.01	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	19352715	3L_19352715_SNP [dm3] 3L_19359615_SNP [dm6]	A	T	4.000e^-6	0.01	INTRON CG32206
3R	17672590	3R_17672590_SNP [dm3] 3R_21846868_SNP [dm6]	G	A	4.007e^-6	0.01	UPSTREAM Gr93d DOWNSTREAM CR44087 INTERGENIC
3R	17672601	3R_17672601_SNP [dm3] 3R_21846879_SNP [dm6]	G	A	4.007e^-6	0.01	UPSTREAM Gr93d DOWNSTREAM CR44087 INTERGENIC
3L	3275195	3L_3275195_SNP [dm3] 3L_3275195_SNP [dm6]	T	G	4.008e^-6	0.01	INTRON CG14960
2L	20832318	2L_20832318_SNP [dm3] 2L_20832318_SNP [dm6]	T	C	4.010e^-6	0.01	DOWNSTREAM Oseg5 INTRON CG31674
3R	7537959	3R_7537959_SNP [dm3] 3R_11712237_SNP [dm6]	G	A	4.044e^-6	0.01	SYNONYMOUS_CODING CG14720	TF binding site mE1_TFBS_cad
3R	21765125	3R_21765125_SNP [dm3] 3R_25939403_SNP [dm6]	C	T	4.048e^-6	0.01	INTRON CCAP-R
3R	20949007	3R_20949007_SNP [dm3] 3R_25123285_SNP [dm6]	G	T	4.055e^-6	0.01	UPSTREAM vig2 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	15046572	2R_15046572_SNP [dm3] 2R_19159067_SNP [dm6]	T	A	4.065e^-6	0.01	INTRON ena
2L	10049018	2L_10049018_SNP [dm3] 2L_10049018_SNP [dm6]	G	T	4.080e^-6	0.01	UPSTREAM CG33301 INTERGENIC
2R	14822253	2R_14822253_DEL [dm3] 2R_18934748_DEL [dm6]	CAGC	C	4.082e^-6	0.01	INTRON sano
3R	15300892	3R_15300892_SNP [dm3] 3R_19475170_SNP [dm6]	G	A	4.084e^-6	0.01	INTRON Dys
3L	9641609	3L_9641609_INS [dm3] 3L_9648509_INS [dm6]	T	TC	4.087e^-6	0.01	INTRON fry & 1 other
3L	935349	3L_935349_SNP [dm3] 3L_935349_SNP [dm6]	A	G	4.098e^-6	0.01	INTRON Glut1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3890285	3L_3890285_DEL [dm3] 3L_3890285_DEL [dm6]	TAAAAGAAGTATGAGAAG...	T	4.113e^-6	0.01	INTERGENIC
2L	5744456	2L_5744456_SNP [dm3] 2L_5744456_SNP [dm6]	C	A	4.121e^-6	0.01	INTRON CG11030
3L	11165418	3L_11165418_SNP [dm3] 3L_11172318_SNP [dm6]	A	T	4.150e^-6	0.01	UTR_3_PRIME CG7616
2L	14927248	2L_14927248_SNP [dm3] 2L_14927248_SNP [dm6]	G	C	4.158e^-6	0.01	SYNONYMOUS_CODING CG3491 INTRON CG42313
2L	14927521	2L_14927521_SNP [dm3] 2L_14927521_SNP [dm6]	T	A	4.158e^-6	0.01	SYNONYMOUS_CODING CG3491 INTRON CG42313	TF binding site mE1_TFBS_HSA
2R	9483772	2R_9483772_SNP [dm3] 2R_13596267_SNP [dm6]	G	A	4.160e^-6	0.01	SYNONYMOUS_CODING CG6197 UPSTREAM S-Lap5
2R	9483814	2R_9483814_SNP [dm3] 2R_13596309_SNP [dm6]	G	A	4.160e^-6	0.01	SYNONYMOUS_CODING CG6197 UPSTREAM S-Lap5
2L	16188669	2L_16188669_SNP [dm3] 2L_16188669_SNP [dm6]	A	C	4.237e^-6	0.01	INTRON Ca-alpha1D
2R	12917499	2R_12917499_SNP [dm3] 2R_17029994_SNP [dm6]	A	G	4.261e^-6	0.01	INTRON RhoGEF2
3L	5937250	3L_5937250_SNP [dm3] 3L_5944150_SNP [dm6]	G	A	4.268e^-6	0.01	INTRON CG33993
X	18151302	X_18151302_SNP [dm3] X_18257269_SNP [dm6]	C	T	4.268e^-6	0.01	EXON CR45613	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14601950	3L_14601950_SNP [dm3] 3L_14608850_SNP [dm6]	A	C	4.274e^-6	0.01	INTERGENIC	TF binding site mE1_TFBS_HSA
X	2244298	X_2244298_SNP [dm3] X_2350265_SNP [dm6]	G	A	4.331e^-6	0.01	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16292121	3R_16292121_SNP [dm3] 3R_20466399_SNP [dm6]	C	G	4.351e^-6	0.01	INTRON Gfrl
X	19857675	X_19857675_DEL [dm3] X_19963642_DEL [dm6]	CTGAAAACCCAAGGCATATC...	C	4.364e^-6	0.01	INTRON Nep3
3R	19722277	3R_19722277_SNP [dm3] 3R_23896555_SNP [dm6]	C	T	4.370e^-6	0.01	NON_SYNONYMOUS_CODING sba UTR_3_PRIME sba INTRON sba
X	20748445	X_20748445_DEL [dm3] X_20877418_DEL [dm6]	TTTTA	T	4.385e^-6	0.01	INTRON shakB
2R	8158284	2R_8158284_SNP [dm3] 2R_12270779_SNP [dm6]	T	C	4.402e^-6	0.011	INTRON Cam
X	16583396	X_16583396_DEL [dm3] X_16689363_DEL [dm6]	ATTTTCCT	A	4.406e^-6	0.011	INTRON Sep4
3L	9811611	3L_9811611_SNP [dm3] 3L_9818511_SNP [dm6]	T	C	4.467e^-6	0.011	UPSTREAM CG43897 INTRON CG43897	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	15300611	3R_15300611_SNP [dm3] 3R_19474889_SNP [dm6]	T	C	4.501e^-6	0.011	INTRON Dys
3R	15505128	3R_15505128_SNP [dm3] 3R_19679406_SNP [dm6]	G	C	4.540e^-6	0.011	INTRON Naam
3R	15505231	3R_15505231_DEL [dm3] 3R_19679509_DEL [dm6]	GCTGCAA	G	4.540e^-6	0.011	INTRON Naam
3R	15507374	3R_15507374_DEL [dm3] 3R_19681652_DEL [dm6]	GAACTATAAATAGAGGGTTG...	G	4.540e^-6	0.011	INTRON Naam
3R	15504830	3R_15504830_SNP [dm3] 3R_19679108_SNP [dm6]	G	A	4.540e^-6	0.011	INTRON Naam
3R	15505611	3R_15505611_SNP [dm3] 3R_19679889_SNP [dm6]	G	A	4.540e^-6	0.011	INTRON Naam
2R	8147903	2R_8147903_DEL [dm3] 2R_12260398_DEL [dm6]	CACAC	C	4.541e^-6	0.011	INTRON Cam EXON CR43900	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	13731081	2L_13731081_SNP [dm3] 2L_13731081_SNP [dm6]	A	G	4.561e^-6	0.011	INTERGENIC
2R	14763324	2R_14763324_SNP [dm3] 2R_18875819_SNP [dm6]	A	T	4.587e^-6	0.011	INTERGENIC
2L	3452247	2L_3452247_DEL [dm3] 2L_3452247_DEL [dm6]	ATAGGATGAAGCAA...	A	4.597e^-6	0.011	UPSTREAM CG12795 DOWNSTREAM Snx1 INTERGENIC
3L	14217395	3L_14217395_SNP [dm3] 3L_14224295_SNP [dm6]	C	T	4.650e^-6	0.011	INTRON nuf
2R	14996840	2R_14996840_SNP [dm3] 2R_19109335_SNP [dm6]	G	A	4.690e^-6	0.011	INTRON 5-HT1A
X	9179892	X_9179892_SNP [dm3] X_9285859_SNP [dm6]	C	G	4.714e^-6	0.011	UTR_5_PRIME lz
3L	14216956	3L_14216956_SNP [dm3] 3L_14223856_SNP [dm6]	A	G	4.737e^-6	0.011	INTRON nuf
3L	7637562	3L_7637562_SNP [dm3] 3L_7644462_SNP [dm6]	G	A	4.762e^-6	0.011	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	6964430	X_6964430_SNP [dm3] X_7070397_SNP [dm6]	C	A	4.775e^-6	0.011	INTRON CG4607
2R	8169673	2R_8169673_SNP [dm3] 2R_12282168_SNP [dm6]	G	A	4.777e^-6	0.011	INTRON CG42700
3L	3568210	3L_3568210_SNP [dm3] 3L_3568210_SNP [dm6]	G	A	4.779e^-6	0.011	INTRON Eip63E	TF binding site mE1_TFBS_bab1
2L	20968253	2L_20968253_SNP [dm3] 2L_20968253_SNP [dm6]	A	T	4.801e^-6	0.011	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	14039248	3L_14039248_SNP [dm3] 3L_14046148_SNP [dm6]	T	A	4.836e^-6	0.011	SYNONYMOUS_CODING blue	TF binding site mE1_TFBS_cad
3R	25847533	3R_25847533_SNP [dm3] 3R_30021811_SNP [dm6]	T	C	4.895e^-6	0.011	UTR_5_PRIME Mgat2 DOWNSTREAM RpS28a INTRON Mgat2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	11134073	3L_11134073_SNP [dm3] 3L_11140973_SNP [dm6]	C	T	4.901e^-6	0.011	INTRON CG32082
2L	7060220	2L_7060220_SNP [dm3] 2L_7060220_SNP [dm6]	C	T	4.911e^-6	0.011	NON_SYNONYMOUS_CODING CG31907 DOWNSTREAM Mnn1 INTRON Mnn1	TF binding site mE1_TFBS_HSA
3R	5317034	3R_5317034_SNP [dm3] 3R_9491312_SNP [dm6]	A	G	4.914e^-6	0.011	INTRON CG16779
2L	2584146	2L_2584146_SNP [dm3] 2L_2584146_SNP [dm6]	G	A	4.929e^-6	0.011	SYNONYMOUS_CODING Drp1	TF binding site mE1_TFBS_chinmo
2L	5744418	2L_5744418_SNP [dm3] 2L_5744418_SNP [dm6]	C	T	4.930e^-6	0.011	INTRON CG11030
2L	3266136	2L_3266136_SNP [dm3] 2L_3266136_SNP [dm6]	C	T	4.947e^-6	0.011	UPSTREAM CR45706 INTERGENIC
2L	12293361	2L_12293361_SNP [dm3] 2L_12293361_SNP [dm6]	C	T	4.948e^-6	0.011	INTRON aret	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17401358	2R_17401358_DEL [dm3] 2R_21513853_DEL [dm6]	AC	A	4.948e^-6	0.011	DOWNSTREAM MESK2 INTRON MESK2	TF binding site mE1_TFBS_Trl
3L	12302659	3L_12302659_SNP [dm3] 3L_12309559_SNP [dm6]	G	T	4.955e^-6	0.011	INTERGENIC
3L	11407108	3L_11407108_SNP [dm3] 3L_11414008_SNP [dm6]	C	T	4.986e^-6	0.011	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	18318295	3L_18318295_SNP [dm3] 3L_18325195_SNP [dm6]	C	T	5.001e^-6	0.011	INTERGENIC
2L	5376364	2L_5376364_SNP [dm3] 2L_5376364_SNP [dm6]	T	A	5.001e^-6	0.011	INTERGENIC
2R	6738849	2R_6738849_SNP [dm3] 2R_10851344_SNP [dm6]	C	A	5.054e^-6	0.012	INTRON CG30015
2R	6745102	2R_6745102_SNP [dm3] 2R_10857597_SNP [dm6]	T	A	5.054e^-6	0.012	INTRON CG30015
2R	18958814	2R_18958814_SNP [dm3] 2R_23071291_SNP [dm6]	G	A	5.057e^-6	0.012	SYNONYMOUS_CODING l_2_k09913 DOWNSTREAM tRNA:CR30201	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13440614	3L_13440614_SNP [dm3] 3L_13447514_SNP [dm6]	G	C	5.063e^-6	0.012	SYNONYMOUS_CODING CG10732 DOWNSTREAM CG10732
3R	25847455	3R_25847455_SNP [dm3] 3R_30021733_SNP [dm6]	T	C	5.068e^-6	0.012	UTR_5_PRIME Mgat2 DOWNSTREAM RpS28a INTRON Mgat2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	2211907	X_2211907_SNP [dm3] X_2317874_SNP [dm6]	G	T	5.096e^-6	0.012	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21980522	3R_21980522_SNP [dm3] 3R_26154800_SNP [dm6]	A	T	5.099e^-6	0.012	INTERGENIC
3L	4651743	3L_4651743_SNP [dm3] 3L_4651743_SNP [dm6]	G	C	5.124e^-6	0.012	INTRON axo
2R	2605392	2R_2605392_SNP [dm3] 2R_6717887_SNP [dm6]	C	G	5.149e^-6	0.012	UPSTREAM Zip42C.1 DOWNSTREAM Zip42C.2 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	11683905	2L_11683905_SNP [dm3] 2L_11683905_SNP [dm6]	G	C	5.194e^-6	0.012	INTERGENIC
X	8626326	X_8626326_INS [dm3] X_8732293_INS [dm6]	A	ATAA	5.195e^-6	0.012	INTERGENIC
X	8626355	X_8626355_SNP [dm3] X_8732322_SNP [dm6]	A	G	5.195e^-6	0.012	INTERGENIC
X	8626364	X_8626364_INS [dm3] X_8732331_INS [dm6]	T	TCCATTTTCTT...	5.195e^-6	0.012	INTERGENIC
X	8626368	X_8626368_SNP [dm3] X_8732335_SNP [dm6]	A	C	5.195e^-6	0.012	INTERGENIC
3R	16291354	3R_16291354_SNP [dm3] 3R_20465632_SNP [dm6]	T	A	5.201e^-6	0.012	INTRON Gfrl
3L	20401532	3L_20401532_SNP [dm3] 3L_20408432_SNP [dm6]	T	C	5.214e^-6	0.012	SYNONYMOUS_CODING CG13248	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1573477	3L_1573477_SNP [dm3] 3L_1573477_SNP [dm6]	G	A	5.223e^-6	0.012	INTRON CG12004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2733386	3L_2733386_SNP [dm3] 3L_2733386_SNP [dm6]	C	T	5.237e^-6	0.012	INTRON Mrtf
2L	2829392	2L_2829392_SNP [dm3] 2L_2829392_SNP [dm6]	C	T	5.260e^-6	0.012	INTRON Duox	TF binding site BDTNP1_TFBS_dl
2L	12096364	2L_12096364_SNP [dm3] 2L_12096364_SNP [dm6]	G	A	5.305e^-6	0.012	SYNONYMOUS_CODING CG6712 UPSTREAM Mt2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15035521	2L_15035521_SNP [dm3] 2L_15035521_SNP [dm6]	A	T	5.313e^-6	0.012	UTR_5_PRIME yellow-c DOWNSTREAM GABA-B-R1 & 1 other
3R	17184155	3R_17184155_SNP [dm3] 3R_21358433_SNP [dm6]	G	A	5.313e^-6	0.012	SYNONYMOUS_CODING mod_mdg4_ & 1 other UTR_5_PRIME pre-mod_mdg4_-J & 3 others UTR_3_PRIME pre-mod_mdg4_-K & 1 other INTRON mod_mdg4_	TF binding site mE1_TFBS_sens
3L	5680183	3L_5680183_SNP [dm3] 3L_5687083_SNP [dm6]	T	A	5.332e^-6	0.012	INTRON sif	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2331512	X_2331512_SNP [dm3] X_2437479_SNP [dm6]	G	C	5.386e^-6	0.012	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18963210	2R_18963210_SNP [dm3] 2R_23075687_SNP [dm6]	A	C	5.387e^-6	0.012	SYNONYMOUS_CODING CG3085 UPSTREAM Fib	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	16882723	3R_16882723_SNP [dm3] 3R_21057001_SNP [dm6]	C	A	5.403e^-6	0.012	INTRON Mvl
X	5974312	X_5974312_SNP [dm3] X_6080279_SNP [dm6]	G	A	5.412e^-6	0.012	INTRON CG4660	TF binding site BDTNP1_TFBS_dl
2L	14227095	2L_14227095_SNP [dm3] 2L_14227095_SNP [dm6]	A	T	5.450e^-6	0.012	INTRON Dyrk2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14227099	2L_14227099_SNP [dm3] 2L_14227099_SNP [dm6]	A	C	5.450e^-6	0.012	INTRON Dyrk2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	18195328	2L_18195328_SNP [dm3] 2L_18195328_SNP [dm6]	A	T	5.451e^-6	0.012	INTRON CG42750	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1260372	3L_1260372_SNP [dm3] 3L_1260372_SNP [dm6]	G	A	5.452e^-6	0.012	INTRON CG9134
3L	13354770	3L_13354770_SNP [dm3] 3L_13361670_SNP [dm6]	T	C	5.494e^-6	0.012	INTERGENIC
2R	14602126	2R_14602126_SNP [dm3] 2R_18714621_SNP [dm6]	A	G	5.496e^-6	0.012	INTERGENIC
3R	16884721	3R_16884721_SNP [dm3] 3R_21058999_SNP [dm6]	C	T	5.529e^-6	0.012	UTR_5_PRIME Mvl INTRON Mvl
3R	26293310	3R_26293310_SNP [dm3] 3R_30467588_SNP [dm6]	C	T	5.540e^-6	0.012	INTRON PH4alphaEFB	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Kr
3R	26293317	3R_26293317_SNP [dm3] 3R_30467595_SNP [dm6]	T	G	5.540e^-6	0.012	INTRON PH4alphaEFB	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	26293320	3R_26293320_SNP [dm3] 3R_30467598_SNP [dm6]	G	T	5.540e^-6	0.012	INTRON PH4alphaEFB	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	12036908	3L_12036908_SNP [dm3] 3L_12043808_SNP [dm6]	A	G	5.639e^-6	0.012	SYNONYMOUS_CODING CG6793 UPSTREAM CG43638 INTRON rols
X	917886	X_917886_SNP [dm3] X_1023853_SNP [dm6]	T	A	5.666e^-6	0.012	INTRON su_w[a]_ & 2 others
3L	10821569	3L_10821569_SNP [dm3] 3L_10828469_SNP [dm6]	A	G	5.726e^-6	0.012	INTERGENIC
2L	20822011	2L_20822011_DEL [dm3] 2L_20822011_DEL [dm6]	TT	T	5.740e^-6	0.012	UPSTREAM CG9331 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	20822026	2L_20822026_SNP [dm3] 2L_20822026_SNP [dm6]	T	C	5.740e^-6	0.012	UPSTREAM CG9331 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1721248	2L_1721248_SNP [dm3] 2L_1721248_SNP [dm6]	G	C	5.764e^-6	0.013	INTRON Rim2
2L	18779555	2L_18779555_SNP [dm3] 2L_18779555_SNP [dm6]	G	A	5.771e^-6	0.013	INTRON ham	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14630256	3L_14630256_SNP [dm3] 3L_14637156_SNP [dm6]	C	T	5.774e^-6	0.013	INTRON dlp	TF binding site BDTNP1_TFBS_dl
2L	20818907	2L_20818907_DEL [dm3] 2L_20818907_DEL [dm6]	AGTACGAAGATTAAA...	A	5.781e^-6	0.013	UPSTREAM CheB38a INTERGENIC
2R	8876004	2R_8876004_SNP [dm3] 2R_12988499_SNP [dm6]	A	G	5.799e^-6	0.013	INTERGENIC
3R	25242436	3R_25242436_SNP [dm3] 3R_29416714_SNP [dm6]	A	G	5.803e^-6	0.013	INTRON Ptp99A
2R	6745043	2R_6745043_SNP [dm3] 2R_10857538_SNP [dm6]	A	T	5.810e^-6	0.013	INTRON CG30015
2L	3265181	2L_3265181_SNP [dm3] 2L_3265181_SNP [dm6]	C	T	5.822e^-6	0.013	EXON CR45706
3L	19356636	3L_19356636_SNP [dm3] 3L_19363536_SNP [dm6]	T	C	5.866e^-6	0.013	INTRON CG32206
3L	19356637	3L_19356637_SNP [dm3] 3L_19363537_SNP [dm6]	C	T	5.866e^-6	0.013	INTRON CG32206
3L	4410589	3L_4410589_SNP [dm3] 3L_4410589_SNP [dm6]	T	G	5.866e^-6	0.013	INTRON DOR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	4410596	3L_4410596_SNP [dm3] 3L_4410596_SNP [dm6]	T	A	5.866e^-6	0.013	INTRON DOR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	4410601	3L_4410601_SNP [dm3] 3L_4410601_SNP [dm6]	T	C	5.866e^-6	0.013	INTRON DOR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	13933332	3L_13933332_SNP [dm3] 3L_13940232_SNP [dm6]	A	T	5.890e^-6	0.013	INTRON CG32137
3R	19720613	3R_19720613_SNP [dm3] 3R_23894891_SNP [dm6]	G	A	5.941e^-6	0.013	UTR_3_PRIME sba
3L	9850577	3L_9850577_SNP [dm3] 3L_9857477_SNP [dm6]	A	T	5.946e^-6	0.013	UTR_3_PRIME CG10809 DOWNSTREAM CG10809	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	7563900	2R_7563900_SNP [dm3] 2R_11676395_SNP [dm6]	G	A	5.973e^-6	0.013	INTRON Roc2 & 1 other	TF binding site mE1_TFBS_cad
2L	5232599	2L_5232599_SNP [dm3] 2L_5232599_SNP [dm6]	C	T	5.974e^-6	0.013	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	19364904	3R_19364904_SNP [dm3] 3R_23539182_SNP [dm6]	A	G	5.994e^-6	0.013	UPSTREAM CG10168 INTERGENIC
3R	19364908	3R_19364908_SNP [dm3] 3R_23539186_SNP [dm6]	A	G	5.994e^-6	0.013	UPSTREAM CG10168 INTERGENIC
2R	7908162	2R_7908162_SNP [dm3] 2R_12020657_SNP [dm6]	G	A	5.997e^-6	0.013	UPSTREAM otk INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
2R	6745040	2R_6745040_SNP [dm3] 2R_10857535_SNP [dm6]	A	G	6.018e^-6	0.013	INTRON CG30015
2R	13818037	2R_13818037_DEL [dm3] 2R_17930532_DEL [dm6]	ACATAC	A	6.025e^-6	0.013	INTERGENIC
3L	5224255	3L_5224255_DEL [dm3] 3L_5231155_DEL [dm6]	CTTA	G	6.046e^-6	0.013	INTRON shep
3L	5224261	3L_5224261_INS [dm3] 3L_5231161_INS [dm6]	T	TTT	6.046e^-6	0.013	INTRON shep
3L	5225140	3L_5225140_SNP [dm3] 3L_5232040_SNP [dm6]	A	G	6.046e^-6	0.013	INTRON shep
3R	19413156	3R_19413156_SNP [dm3] 3R_23587434_SNP [dm6]	G	A	6.058e^-6	0.013	INTRON CG10182
3L	11230302	3L_11230302_SNP [dm3] 3L_11237202_SNP [dm6]	A	G	6.059e^-6	0.013	UPSTREAM Ir68a & 1 other EXON CR44718	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	2744376	2L_2744376_SNP [dm3] 2L_2744376_SNP [dm6]	G	A	6.087e^-6	0.013	SYNONYMOUS_CODING CG9961 UTR_3_PRIME CG9961 UPSTREAM Cwc25 DOWNSTREAM Hrs
3L	14601236	3L_14601236_SNP [dm3] 3L_14608136_SNP [dm6]	T	A	6.118e^-6	0.013	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	14601238	3L_14601238_SNP [dm3] 3L_14608138_SNP [dm6]	C	T	6.118e^-6	0.013	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	2706307	2L_2706307_SNP [dm3] 2L_2706307_SNP [dm6]	G	T	6.123e^-6	0.013	INTRON CG31690
3R	13357447	3R_13357447_SNP [dm3] 3R_17531725_SNP [dm6]	C	T	6.152e^-6	0.013	DOWNSTREAM CG5823 INTERGENIC
3R	5143037	3R_5143037_SNP [dm3] 3R_9317315_SNP [dm6]	G	T	6.166e^-6	0.013	INTRON CG8861
3L	2284322	3L_2284322_SNP [dm3] 3L_2284322_SNP [dm6]	C	T	6.184e^-6	0.013	INTRON MsR2
3L	17760418	3L_17760418_SNP [dm3] 3L_17767318_SNP [dm6]	A	C	6.200e^-6	0.013	INTERGENIC	TF binding site mE1_TFBS_inv
3R	24967259	3R_24967259_SNP [dm3] 3R_29141537_SNP [dm6]	C	A	6.203e^-6	0.013	INTRON CG14516
3R	16882814	3R_16882814_INS [dm3] 3R_21057092_INS [dm6]	C	CCCATTAC	6.215e^-6	0.013	INTRON Mvl
3R	26479881	3R_26479881_SNP [dm3] 3R_30654159_SNP [dm6]	A	G	6.223e^-6	0.013	INTERGENIC
2L	12035116	2L_12035116_SNP [dm3] 2L_12035116_SNP [dm6]	G	A	6.242e^-6	0.013	NON_SYNONYMOUS_CODING CG18788 DOWNSTREAM dmGlut & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11773066	3R_11773066_SNP [dm3] 3R_15947344_SNP [dm6]	C	G	6.259e^-6	0.013	INTRON Sap47
2L	10941871	2L_10941871_SNP [dm3] 2L_10941871_SNP [dm6]	T	A	6.263e^-6	0.013	DOWNSTREAM CR44492 INTRON dpr2
2L	16188810	2L_16188810_SNP [dm3] 2L_16188810_SNP [dm6]	A	G	6.276e^-6	0.013	INTRON Ca-alpha1D
3R	10139173	3R_10139173_SNP [dm3] 3R_14313451_SNP [dm6]	A	T	6.282e^-6	0.013	INTRON CG31321
2L	5250620	2L_5250620_SNP [dm3] 2L_5250620_SNP [dm6]	T	A	6.395e^-6	0.013	INTRON tkv
3L	20414915	3L_20414915_SNP [dm3] 3L_20421815_SNP [dm6]	C	A	6.397e^-6	0.013	NON_SYNONYMOUS_CODING zye	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16291562	3R_16291562_SNP [dm3] 3R_20465840_SNP [dm6]	G	A	6.418e^-6	0.013	INTRON Gfrl
2R	15274830	2R_15274830_SNP [dm3] 2R_19387325_SNP [dm6]	C	T	6.418e^-6	0.013	SYNONYMOUS_CODING CG10081
3R	15504467	3R_15504467_SNP [dm3] 3R_19678745_SNP [dm6]	T	C	6.464e^-6	0.013	INTRON Naam
3R	15504486	3R_15504486_SNP [dm3] 3R_19678764_SNP [dm6]	T	A	6.464e^-6	0.013	INTRON Naam
3R	15504523	3R_15504523_SNP [dm3] 3R_19678801_SNP [dm6]	G	A	6.464e^-6	0.013	INTRON Naam
3R	15504605	3R_15504605_SNP [dm3] 3R_19678883_SNP [dm6]	T	C	6.464e^-6	0.013	INTRON Naam
3R	15505207	3R_15505207_SNP [dm3] 3R_19679485_SNP [dm6]	A	G	6.464e^-6	0.013	INTRON Naam
3R	15506138	3R_15506138_SNP [dm3] 3R_19680416_SNP [dm6]	G	T	6.464e^-6	0.013	INTRON Naam
3R	15506140	3R_15506140_SNP [dm3] 3R_19680418_SNP [dm6]	G	C	6.464e^-6	0.013	INTRON Naam
3L	3556649	3L_3556649_SNP [dm3] 3L_3556649_SNP [dm6]	T	A	6.487e^-6	0.013	INTRON Eip63E	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	4571933	2L_4571933_SNP [dm3] 2L_4571933_SNP [dm6]	T	G	6.501e^-6	0.013	INTRON dp
2L	4571937	2L_4571937_SNP [dm3] 2L_4571937_SNP [dm6]	T	G	6.501e^-6	0.013	INTRON dp
3L	15378078	3L_15378078_SNP [dm3] 3L_15384978_SNP [dm6]	G	T	6.532e^-6	0.013	INTERGENIC
2L	6308811	2L_6308811_SNP [dm3] 2L_6308811_SNP [dm6]	G	A	6.537e^-6	0.013	UPSTREAM CG13984 & 1 other INTRON Ddr	TF binding site mE1_TFBS_cad
2R	8565306	2R_8565306_SNP [dm3] 2R_12677801_SNP [dm6]	G	C	6.542e^-6	0.013	INTRON CG42708
3R	16322349	3R_16322349_SNP [dm3] 3R_20496627_SNP [dm6]	G	A	6.542e^-6	0.013	INTERGENIC
2R	14425100	2R_14425100_SNP [dm3] 2R_18537595_SNP [dm6]	G	C	6.553e^-6	0.013	NON_SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13216403	3L_13216403_SNP [dm3] 3L_13223303_SNP [dm6]	C	T	6.573e^-6	0.013	INTERGENIC
3R	14786906	3R_14786906_SNP [dm3] 3R_18961184_SNP [dm6]	C	T	6.573e^-6	0.013	INTRON CG42613 & 1 other
3R	5137947	3R_5137947_DEL [dm3] 3R_9312225_DEL [dm6]	AA	A	6.582e^-6	0.013	INTRON CG8861
3R	24726324	3R_24726324_SNP [dm3] 3R_28900602_SNP [dm6]	C	T	6.586e^-6	0.013	INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12889362	3L_12889362_SNP [dm3] 3L_12896262_SNP [dm6]	C	T	6.594e^-6	0.013	INTERGENIC
X	1882308	X_1882308_SNP [dm3] X_1988275_SNP [dm6]	G	A	6.619e^-6	0.013	INTRON Hr4
2L	9873831	2L_9873831_SNP [dm3] 2L_9873831_SNP [dm6]	T	A	6.694e^-6	0.013	INTRON nAChRalpha6
2L	9873840	2L_9873840_SNP [dm3] 2L_9873840_SNP [dm6]	C	T	6.694e^-6	0.013	INTRON nAChRalpha6
2L	7615831	2L_7615831_SNP [dm3] 2L_7615831_SNP [dm6]	C	A	6.752e^-6	0.014	NON_SYNONYMOUS_CODING CG6739 UTR_3_PRIME CG6739
2L	7615865	2L_7615865_SNP [dm3] 2L_7615865_SNP [dm6]	G	T	6.752e^-6	0.014	NON_SYNONYMOUS_CODING CG6739 UTR_3_PRIME CG6739
2R	14719157	2R_14719157_SNP [dm3] 2R_18831652_SNP [dm6]	G	T	6.757e^-6	0.014	INTRON CG15082
2L	8109169	2L_8109169_SNP [dm3] 2L_8109169_SNP [dm6]	T	C	6.774e^-6	0.014	UTR_3_PRIME Bsg INTRON Bsg
3L	8771571	3L_8771571_SNP [dm3] 3L_8778471_SNP [dm6]	G	A	6.794e^-6	0.014	INTRON Fhos
2L	6587355	2L_6587355_SNP [dm3] 2L_6587355_SNP [dm6]	G	T	6.800e^-6	0.014	INTRON CG11319
2L	8121440	2L_8121440_SNP [dm3] 2L_8121440_SNP [dm6]	C	T	6.815e^-6	0.014	INTRON mon2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20247358	X_20247358_SNP [dm3] X_20376331_SNP [dm6]	G	C	6.850e^-6	0.014	NON_SYNONYMOUS_CODING CG12679	TF binding site BDTNP1_TFBS_sna
3L	10173224	3L_10173224_SNP [dm3] 3L_10180124_SNP [dm6]	G	A	6.858e^-6	0.014	INTRON dpr10
3R	14323864	3R_14323864_SNP [dm3] 3R_18498142_SNP [dm6]	G	T	6.864e^-6	0.014	INTRON fru
3R	9578843	3R_9578843_SNP [dm3] 3R_13753121_SNP [dm6]	T	A	6.936e^-6	0.014	SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	19331371	3L_19331371_SNP [dm3] 3L_19338271_SNP [dm6]	T	C	6.953e^-6	0.014	UPSTREAM pip INTERGENIC
3L	621483	3L_621483_SNP [dm3] 3L_621483_SNP [dm6]	G	C	6.990e^-6	0.014	INTRON CG43337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	26964976	3R_26964976_SNP [dm3] 3R_31139254_SNP [dm6]	A	G	7.008e^-6	0.014	INTRON Gycbeta100B
2L	4571930	2L_4571930_SNP [dm3] 2L_4571930_SNP [dm6]	A	G	7.062e^-6	0.014	INTRON dp
2R	5344367	2R_5344367_SNP [dm3] 2R_9456862_SNP [dm6]	C	T	7.078e^-6	0.014	INTRON Camta	TF binding site mE1_TFBS_cad
X	12916092	X_12916092_SNP [dm3] X_13022059_SNP [dm6]	C	T	7.080e^-6	0.014	UPSTREAM CG2209 INTRON rad
3R	16295289	3R_16295289_DEL [dm3] 3R_20469567_DEL [dm6]	CGTAT	G	7.088e^-6	0.014	INTRON Gfrl
2L	5559205	2L_5559205_SNP [dm3] 2L_5559205_SNP [dm6]	C	A	7.092e^-6	0.014	UPSTREAM GluRIIB DOWNSTREAM GluRIIA INTERGENIC	TF binding site mE1_TFBS_inv
3L	9808774	3L_9808774_SNP [dm3] 3L_9815674_SNP [dm6]	G	T	7.099e^-6	0.014	UPSTREAM CG43897 INTRON CG43897
2L	20706561	2L_20706561_SNP [dm3] 2L_20706561_SNP [dm6]	C	T	7.099e^-6	0.014	INTRON Hr38
2L	20817137	2L_20817137_SNP [dm3] 2L_20817137_SNP [dm6]	A	G	7.099e^-6	0.014	SYNONYMOUS_CODING CheB38b UPSTREAM CG33322 DOWNSTREAM CheB38a
2L	20824178	2L_20824178_SNP [dm3] 2L_20824178_SNP [dm6]	G	A	7.099e^-6	0.014	UPSTREAM CG9331 INTRON CG9331	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	20824437	2L_20824437_SNP [dm3] 2L_20824437_SNP [dm6]	C	A	7.099e^-6	0.014	UTR_5_PRIME CG9331 UPSTREAM CG9331 INTRON CG9331	TF binding site BDTNP1_TFBS_dl
2L	20825968	2L_20825968_SNP [dm3] 2L_20825968_SNP [dm6]	A	G	7.099e^-6	0.014	SYNONYMOUS_CODING CG9331	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
X	3977359	X_3977359_SNP [dm3] X_4083326_SNP [dm6]	T	C	7.101e^-6	0.014	SYNONYMOUS_CODING CG43689	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14964048	2L_14964048_SNP [dm3] 2L_14964048_SNP [dm6]	G	A	7.111e^-6	0.014	INTRON CG42313
2R	19074148	2R_19074148_DEL [dm3] 2R_23186625_DEL [dm6]	TCTATTTTTGAGCCGCTCCT...	T	7.195e^-6	0.014	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	11936079	3R_11936079_SNP [dm3] 3R_16110357_SNP [dm6]	T	C	7.264e^-6	0.014	INTERGENIC
3L	9703638	3L_9703638_INS [dm3] 3L_9710538_INS [dm6]	T	TT	7.296e^-6	0.014	UTR_3_PRIME SH3PX1 DOWNSTREAM CG16711
2L	2706400	2L_2706400_SNP [dm3] 2L_2706400_SNP [dm6]	G	T	7.299e^-6	0.014	INTRON CG31690
3L	10419848	3L_10419848_SNP [dm3] 3L_10426748_SNP [dm6]	C	T	7.354e^-6	0.014	INTERGENIC
2L	13971710	2L_13971710_SNP [dm3] 2L_13971710_SNP [dm6]	C	T	7.356e^-6	0.014	DOWNSTREAM He INTRON NimB5	TF binding site mE1_TFBS_cad
3L	11692494	3L_11692494_SNP [dm3] 3L_11699394_SNP [dm6]	G	A	7.409e^-6	0.014	UPSTREAM CG6053 DOWNSTREAM CG11658 INTERGENIC
X	3809880	X_3809880_SNP [dm3] X_3915847_SNP [dm6]	A	T	7.409e^-6	0.014	INTRON CG42541
X	21868842	X_21868842_SNP [dm3] X_22467006_SNP [dm6]	C	T	7.430e^-6	0.014	INTRON CG14619
3R	9276017	3R_9276017_SNP [dm3] 3R_13450295_SNP [dm6]	C	G	7.473e^-6	0.014	UPSTREAM CG14372 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	20425925	X_20425925_SNP [dm3] X_20554898_SNP [dm6]	G	C	7.499e^-6	0.014	INTRON RunxB
3R	8428686	3R_8428686_SNP [dm3] 3R_12602964_SNP [dm6]	A	T	7.563e^-6	0.015	INTERGENIC
3R	8429502	3R_8429502_SNP [dm3] 3R_12603780_SNP [dm6]	C	T	7.563e^-6	0.015	INTERGENIC
X	15270369	X_15270369_SNP [dm3] X_15376336_SNP [dm6]	G	T	7.577e^-6	0.015	INTRON acj6
3R	10147124	3R_10147124_INS [dm3] 3R_14321402_INS [dm6]	T	TT	7.595e^-6	0.015	UTR_3_PRIME Afti DOWNSTREAM pr-set7	TF binding site mE1_TFBS_cad
2R	4728392	2R_4728392_SNP [dm3] 2R_8840887_SNP [dm6]	G	A	7.606e^-6	0.015	INTRON sns	TF binding site mE1_TFBS_cad
3L	14216606	3L_14216606_SNP [dm3] 3L_14223506_SNP [dm6]	C	G	7.610e^-6	0.015	INTRON nuf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17563001	2R_17563001_SNP [dm3] 2R_21675496_SNP [dm6]	C	G	7.627e^-6	0.015	INTRON CG30263
3L	13216175	3L_13216175_SNP [dm3] 3L_13223075_SNP [dm6]	T	C	7.652e^-6	0.015	INTERGENIC
3L	13216359	3L_13216359_DEL [dm3] 3L_13223259_DEL [dm6]	AAGCTGTTCAA...	A	7.652e^-6	0.015	INTERGENIC
2R	14758050	2R_14758050_SNP [dm3] 2R_18870545_SNP [dm6]	C	G	7.655e^-6	0.015	INTERGENIC
3L	2730435	3L_2730435_SNP [dm3] 3L_2730435_SNP [dm6]	A	G	7.674e^-6	0.015	INTRON Mrtf
3R	19716209	3R_19716209_SNP [dm3] 3R_23890487_SNP [dm6]	G	A	7.684e^-6	0.015	UTR_3_PRIME TfIIA-S UPSTREAM Pli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	10146344	3R_10146344_SNP [dm3] 3R_14320622_SNP [dm6]	A	G	7.694e^-6	0.015	UTR_3_PRIME Afti DOWNSTREAM pr-set7 & 1 other
3R	16882669	3R_16882669_SNP [dm3] 3R_21056947_SNP [dm6]	G	T	7.694e^-6	0.015	INTRON Mvl
2L	16188688	2L_16188688_SNP [dm3] 2L_16188688_SNP [dm6]	G	C	7.694e^-6	0.015	INTRON Ca-alpha1D
3L	13199243	3L_13199243_SNP [dm3] 3L_13206143_SNP [dm6]	C	T	7.707e^-6	0.015	INTERGENIC
3L	10428348	3L_10428348_SNP [dm3] 3L_10435248_SNP [dm6]	A	G	7.731e^-6	0.015	INTERGENIC	TF binding site mE1_TFBS_HSA
X	19541967	X_19541967_SNP [dm3] X_19647934_SNP [dm6]	G	A	7.739e^-6	0.015	SYNONYMOUS_CODING Ranbp21	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2361884	2L_2361884_SNP [dm3] 2L_2361884_SNP [dm6]	T	C	7.773e^-6	0.015	UPSTREAM Rab5 INTRON Rab5
2R	7697392	2R_7697392_SNP [dm3] 2R_11809887_SNP [dm6]	C	T	7.799e^-6	0.015	INTRON ths
3R	17296687	3R_17296687_SNP [dm3] 3R_21470965_SNP [dm6]	T	A	7.811e^-6	0.015	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16271870	2R_16271870_SNP [dm3] 2R_20384365_SNP [dm6]	T	G	7.818e^-6	0.015	INTERGENIC
X	13985599	X_13985599_SNP [dm3] X_14091566_SNP [dm6]	A	G	7.840e^-6	0.015	INTERGENIC
3L	12720386	3L_12720386_SNP [dm3] 3L_12727286_SNP [dm6]	A	C	7.912e^-6	0.015	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20274947	3L_20274947_SNP [dm3] 3L_20281847_SNP [dm6]	T	A	7.912e^-6	0.015	INTRON gogo	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5223546	3L_5223546_SNP [dm3] 3L_5230446_SNP [dm6]	G	A	7.912e^-6	0.015	INTRON shep
X	13454996	X_13454996_SNP [dm3] X_13560963_SNP [dm6]	A	G	7.912e^-6	0.015	UPSTREAM CG32633 INTERGENIC
X	20942027	X_20942027_SNP [dm3] X_21071000_SNP [dm6]	C	T	7.912e^-6	0.015	INTRON bves	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18533812	3R_18533812_SNP [dm3] 3R_22708090_SNP [dm6]	A	C	7.917e^-6	0.015	NON_SYNONYMOUS_CODING CG4907 UPSTREAM CG13842
3R	21354425	3R_21354425_INS [dm3] 3R_25528703_INS [dm6]	T	TA	7.948e^-6	0.015	INTRON msi
3L	9850590	3L_9850590_SNP [dm3] 3L_9857490_SNP [dm6]	T	G	7.949e^-6	0.015	UTR_3_PRIME CG10809 DOWNSTREAM CG10809	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	23567738	3R_23567738_DEL [dm3] 3R_27742016_DEL [dm6]	TT	T	7.959e^-6	0.015	INTRON Ets98B
3L	19086014	3L_19086014_SNP [dm3] 3L_19092914_SNP [dm6]	A	T	7.963e^-6	0.015	SYNONYMOUS_CODING MESR6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7908296	2R_7908296_SNP [dm3] 2R_12020791_SNP [dm6]	G	C	7.990e^-6	0.015	UPSTREAM otk INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
3L	3496761	3L_3496761_SNP [dm3] 3L_3496761_SNP [dm6]	A	T	7.994e^-6	0.015	INTRON CG42324
2R	14278391	2R_14278391_SNP [dm3] 2R_18390886_SNP [dm6]	T	A	8.005e^-6	0.015	UPSTREAM CG15068 DOWNSTREAM CG15065 INTERGENIC

By genomic position
Variant impact
Gene name

Microbiota_OTU081 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results