DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.909e^-18)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

25154 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	10135596	2L_10135596_SNP [dm3] 2L_10135596_SNP [dm6]	G	T	0	0	INTRON CG44153
2L	10471736	2L_10471736_SNP [dm3] 2L_10471736_SNP [dm6]	G	A	0	0	SYNONYMOUS_CODING RluA-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12112219	2L_12112219_SNP [dm3] 2L_12112219_SNP [dm6]	G	A	0	0	UTR_3_PRIME Phae2 DOWNSTREAM Phae2
2L	12178908	2L_12178908_SNP [dm3] 2L_12178908_SNP [dm6]	T	A	0	0	INTRON aret
2L	12583516	2L_12583516_SNP [dm3] 2L_12583516_SNP [dm6]	C	G	0	0	DOWNSTREAM CR44596 EXON CR44595
2L	14968124	2L_14968124_SNP [dm3] 2L_14968124_SNP [dm6]	C	T	0	0	INTRON CG42313
2L	16689277	2L_16689277_SNP [dm3] 2L_16689277_SNP [dm6]	A	T	0	0	INTRON grp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	19105596	2L_19105596_SNP [dm3] 2L_19105596_SNP [dm6]	T	C	0	0	INTRON Lim3
2L	20657493	2L_20657493_SNP [dm3] 2L_20657493_SNP [dm6]	C	G	0	0	INTRON CG2614	TF binding site mE1_TFBS_sens
2L	22028653	2L_22028653_SNP [dm3] 2L_22028653_SNP [dm6]	T	A	0	0	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3804620	2L_3804620_SNP [dm3] 2L_3804620_SNP [dm6]	T	C	0	0	INTRON Reph	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	5515293	2L_5515293_SNP [dm3] 2L_5515293_SNP [dm6]	C	A	0	0	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7524301	2L_7524301_SNP [dm3] 2L_7524301_SNP [dm6]	G	C	0	0	INTRON RapGAP1
2L	7964285	2L_7964285_SNP [dm3] 2L_7964285_SNP [dm6]	T	C	0	0	INTRON Snoo	TF binding site mE1_TFBS_inv
2L	9725968	2L_9725968_SNP [dm3] 2L_9725968_SNP [dm6]	C	T	0	0	INTRON Nckx30C
2R	12325869	2R_12325869_SNP [dm3] 2R_16438364_SNP [dm6]	T	A	0	0	INTERGENIC
2R	1438916	2R_1438916_INS [dm3] 2R_5551411_INS [dm6]	A	AAGATT	0	0	INTERGENIC	transposable element FlyBase
2R	282651	2R_282651_DEL [dm3] 2R_4395146_DEL [dm6]	TCTTAAATAGAGGAAAAGGA...	T	0	0	INTRON Gprk1
2R	293709	2R_293709_SNP [dm3] 2R_4406204_SNP [dm6]	T	A	0	0	INTRON Gprk1
3L	10320987	3L_10320987_SNP [dm3] 3L_10327887_SNP [dm6]	C	T	0	0	DOWNSTREAM CR45244 INTERGENIC
3L	18207549	3L_18207549_SNP [dm3] 3L_18214449_SNP [dm6]	T	G	0	0	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	4608219	3L_4608219_SNP [dm3] 3L_4608219_SNP [dm6]	A	T	0	0	INTRON Src64B
3L	5160870	3L_5160870_SNP [dm3] 3L_5167770_SNP [dm6]	A	T	0	0	INTRON shep
3L	5281993	3L_5281993_INS [dm3] 3L_5288893_INS [dm6]	T	TT	0	0	INTERGENIC
3R	10875254	3R_10875254_SNP [dm3] 3R_15049532_SNP [dm6]	C	T	0	0	INTERGENIC
3R	12672504	3R_12672504_SNP [dm3] 3R_16846782_SNP [dm6]	T	C	0	0	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	14923581	3R_14923581_SNP [dm3] 3R_19097859_SNP [dm6]	T	A	0	0	INTRON CG6040
3R	16205267	3R_16205267_SNP [dm3] 3R_20379545_SNP [dm6]	T	C	0	0	UTR_3_PRIME Gfrl
3R	17251163	3R_17251163_SNP [dm3] 3R_21425441_SNP [dm6]	G	A	0	0	DOWNSTREAM lbl INTRON lbl
3R	18194884	3R_18194884_SNP [dm3] 3R_22369162_SNP [dm6]	C	G	0	0	UPSTREAM PyK INTRON PyK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	5537209	3R_5537209_SNP [dm3] 3R_9711487_SNP [dm6]	A	C	0	0	NON_SYNONYMOUS_CODING dmt UPSTREAM trbd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	8928025	X_8928025_SNP [dm3] X_9033992_SNP [dm6]	C	T	0	0	INTRON CR43836 & 1 other
2R	13745844	2R_13745844_SNP [dm3] 2R_17858339_SNP [dm6]	T	C	2.585e^-40	1.419e^-35	INTRON olf186-F
2R	13746320	2R_13746320_SNP [dm3] 2R_17858815_SNP [dm6]	C	T	4.111e^-40	2.191e^-35	INTRON olf186-F
2R	14751213	2R_14751213_SNP [dm3] 2R_18863708_SNP [dm6]	C	A	7.649e^-39	3.850e^-34	UPSTREAM CG43070 DOWNSTREAM CG43069 & 1 other INTERGENIC
2R	14751231	2R_14751231_SNP [dm3] 2R_18863726_SNP [dm6]	T	A	7.649e^-39	3.850e^-34	UPSTREAM CG43070 DOWNSTREAM CG43069 & 1 other INTERGENIC
2R	14705624	2R_14705624_SNP [dm3] 2R_18818119_SNP [dm6]	G	C	3.580e^-34	1.753e^-29	INTERGENIC
2R	14885370	2R_14885370_SNP [dm3] 2R_18997865_SNP [dm6]	G	T	9.587e^-34	4.571e^-29	SYNONYMOUS_CODING tn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2648918	2L_2648918_SNP [dm3] 2L_2648918_SNP [dm6]	C	G	1.647e^-23	7.651e^-19	NON_SYNONYMOUS_CODING CG33125 UTR_3_PRIME CG33125 DOWNSTREAM CG43851
2L	3934783	2L_3934783_SNP [dm3] 2L_3934783_SNP [dm6]	A	T	3.577e^-23	1.620e^-18	INTRON fred
3R	10225115	3R_10225115_SNP [dm3] 3R_14399393_SNP [dm6]	T	G	3.941e^-20	1.742e^-15	INTRON cv-c
3R	5553123	3R_5553123_SNP [dm3] 3R_9727401_SNP [dm6]	A	T	7.843e^-20	3.384e^-15	UTR_3_PRIME FoxP INTRON FoxP	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	2267840	2L_2267840_SNP [dm3] 2L_2267840_SNP [dm6]	T	G	2.895e^-19	1.029e^-14	DOWNSTREAM CG17242 INTERGENIC
2L	5605983	2L_5605983_SNP [dm3] 2L_5605983_SNP [dm6]	G	A	2.895e^-19	1.029e^-14	SPLICE_SITE_REGION CG14010 INTRON CG14010
2L	5607141	2L_5607141_SNP [dm3] 2L_5607141_SNP [dm6]	A	C	2.895e^-19	1.029e^-14	INTRON CG14010	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5607168	2L_5607168_DEL [dm3] 2L_5607168_DEL [dm6]	ATTTCTTACTTGTCGTAATT...	A	2.895e^-19	1.029e^-14	INTRON CG14010	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5607253	2L_5607253_DEL [dm3] 2L_5607253_DEL [dm6]	TATCT	T	2.895e^-19	1.029e^-14	INTRON CG14010
2L	5607607	2L_5607607_SNP [dm3] 2L_5607607_SNP [dm6]	A	G	2.895e^-19	1.029e^-14	INTRON CG14010
2L	5608463	2L_5608463_SNP [dm3] 2L_5608463_SNP [dm6]	T	C	2.895e^-19	1.029e^-14	INTRON CG14010
2L	5608729	2L_5608729_SNP [dm3] 2L_5608729_SNP [dm6]	A	T	2.895e^-19	1.029e^-14	INTRON CG14010
2L	5609887	2L_5609887_SNP [dm3] 2L_5609887_SNP [dm6]	C	A	2.895e^-19	1.029e^-14	INTRON CG14010
2L	5701609	2L_5701609_SNP [dm3] 2L_5701609_SNP [dm6]	T	C	5.497e^-19	1.642e^-14	INTERGENIC
2L	5611132	2L_5611132_SNP [dm3] 2L_5611132_SNP [dm6]	T	C	5.503e^-19	1.642e^-14	INTRON CG14010
3L	11063969	3L_11063969_SNP [dm3] 3L_11070869_SNP [dm6]	G	A	5.505e^-19	1.642e^-14	NON_SYNONYMOUS_CODING Mocs1
3R	10224629	3R_10224629_SNP [dm3] 3R_14398907_SNP [dm6]	G	C	5.508e^-19	1.642e^-14	INTRON cv-c
2L	5608645	2L_5608645_SNP [dm3] 2L_5608645_SNP [dm6]	C	T	5.511e^-19	1.642e^-14	INTRON CG14010	transposable element FlyBase
3L	2740914	3L_2740914_SNP [dm3] 3L_2740914_SNP [dm6]	C	T	5.518e^-19	1.642e^-14	DOWNSTREAM Acp62F INTRON Mrtf
3R	14604373	3R_14604373_SNP [dm3] 3R_18778651_SNP [dm6]	A	C	5.521e^-19	1.642e^-14	INTRON CG7720
3L	7556209	3L_7556209_SNP [dm3] 3L_7563109_SNP [dm6]	C	A	5.549e^-19	1.642e^-14	NON_SYNONYMOUS_CODING frac	TF binding site BDTNP1_TFBS_twi
2R	16604924	2R_16604924_SNP [dm3] 2R_20717419_SNP [dm6]	T	A	5.573e^-19	1.642e^-14	INTRON dpr
X	5240326	X_5240326_SNP [dm3] X_5346293_SNP [dm6]	A	G	5.618e^-19	1.642e^-14	INTRON SK
X	5240327	X_5240327_SNP [dm3] X_5346294_SNP [dm6]	A	C	5.618e^-19	1.642e^-14	INTRON SK
3R	5551616	3R_5551616_SNP [dm3] 3R_9725894_SNP [dm6]	C	T	6.239e^-19	1.794e^-14	UPSTREAM hyd DOWNSTREAM FoxP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14364207	3L_14364207_SNP [dm3] 3L_14371107_SNP [dm6]	C	T	1.049e^-18	2.870e^-14	INTERGENIC
3R	16335812	3R_16335812_SNP [dm3] 3R_20510090_SNP [dm6]	G	A	1.050e^-18	2.870e^-14	UTR_5_PRIME CG4288
3R	10999334	3R_10999334_SNP [dm3] 3R_15173612_SNP [dm6]	T	C	1.062e^-18	2.870e^-14	DOWNSTREAM Mf INTRON Mf & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12339207	2R_12339207_SNP [dm3] 2R_16451702_SNP [dm6]	G	T	1.070e^-18	2.870e^-14	INTERGENIC
3L	20673887	3L_20673887_SNP [dm3] 3L_20680787_SNP [dm6]	T	C	1.077e^-18	2.870e^-14	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10465069	3R_10465069_SNP [dm3] 3R_14639347_SNP [dm6]	G	A	2.011e^-18	5.133e^-14	SYNONYMOUS_CODING Cad88C INTRON CG7886
3R	13280622	3R_13280622_SNP [dm3] 3R_17454900_SNP [dm6]	G	A	2.011e^-18	5.133e^-14	DOWNSTREAM CG14330 INTERGENIC
3R	9436081	3R_9436081_SNP [dm3] 3R_13610359_SNP [dm6]	T	A	2.011e^-18	5.133e^-14	INTERGENIC
3R	13821733	3R_13821733_DEL [dm3] 3R_17996011_DEL [dm6]	CT	C	2.054e^-18	5.168e^-14	INTRON cpo
3R	14604372	3R_14604372_SNP [dm3] 3R_18778650_SNP [dm6]	G	A	3.793e^-18	9.414e^-14	INTRON CG7720
X	5610591	X_5610591_SNP [dm3] X_5716558_SNP [dm6]	T	G	4.000e^-18	9.795e^-14	INTRON CG33080
3L	11061880	3L_11061880_SNP [dm3] 3L_11068780_SNP [dm6]	T	C	7.411e^-18	1.791e^-13	UTR_3_PRIME CG45101 & 1 other DOWNSTREAM CG6310
3R	23127878	3R_23127878_SNP [dm3] 3R_27302156_SNP [dm6]	C	T	9.270e^-18	2.210e^-13	INTRON CG3339
2L	3726827	2L_3726827_SNP [dm3] 2L_3726827_SNP [dm6]	C	G	1.955e^-17	4.601e^-13	SYNONYMOUS_CODING Shaw UTR_3_PRIME Shaw
2L	8189380	2L_8189380_SNP [dm3] 2L_8189380_SNP [dm6]	T	G	2.654e^-17	6.164e^-13	UTR_3_PRIME Piezo DOWNSTREAM CG34134
3L	1754062	3L_1754062_SNP [dm3] 3L_1754062_SNP [dm6]	G	A	4.294e^-17	8.944e^-13	SYNONYMOUS_CODING Cht2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	19031888	3L_19031888_SNP [dm3] 3L_19038788_SNP [dm6]	A	G	4.294e^-17	8.944e^-13	INTRON nkd	TF binding site mE1_TFBS_cad
3L	8311874	3L_8311874_SNP [dm3] 3L_8318774_SNP [dm6]	A	T	4.294e^-17	8.944e^-13	INTRON CG43059
3R	10246331	3R_10246331_SNP [dm3] 3R_14420609_SNP [dm6]	G	A	4.294e^-17	8.944e^-13	NON_SYNONYMOUS_CODING natalisin INTRON cv-c	TF binding site mE1_TFBS_cad
3R	10246537	3R_10246537_SNP [dm3] 3R_14420815_SNP [dm6]	G	A	4.294e^-17	8.944e^-13	SYNONYMOUS_CODING natalisin DOWNSTREAM CR44176 INTRON cv-c	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	10246628	3R_10246628_SNP [dm3] 3R_14420906_SNP [dm6]	G	A	4.294e^-17	8.944e^-13	SPLICE_SITE_REGION natalisin DOWNSTREAM CR44176 INTRON cv-c & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5752356	3R_5752356_SNP [dm3] 3R_9926634_SNP [dm6]	G	T	4.294e^-17	8.944e^-13	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	5752417	3R_5752417_SNP [dm3] 3R_9926695_SNP [dm6]	C	T	4.294e^-17	8.944e^-13	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9504058	X_9504058_SNP [dm3] X_9610025_SNP [dm6]	C	T	4.294e^-17	8.944e^-13	SYNONYMOUS_CODING CG42797	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5605716	2L_5605716_SNP [dm3] 2L_5605716_SNP [dm6]	G	T	5.139e^-17	1.046e^-12	INTRON CG14010
2L	5605739	2L_5605739_SNP [dm3] 2L_5605739_SNP [dm6]	A	G	5.139e^-17	1.046e^-12	INTRON CG14010
2R	17899543	2R_17899543_SNP [dm3] 2R_22012038_SNP [dm6]	T	C	7.446e^-17	1.377e^-12	INTRON CG34370
2L	441144	2L_441144_SNP [dm3] 2L_441144_SNP [dm6]	C	G	7.489e^-17	1.377e^-12	INTRON ex	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	8176731	2R_8176731_SNP [dm3] 2R_12289226_SNP [dm6]	C	T	7.489e^-17	1.377e^-12	INTRON CG42700
3L	8283154	3L_8283154_SNP [dm3] 3L_8290054_SNP [dm6]	T	A	7.489e^-17	1.377e^-12	UPSTREAM cert DOWNSTREAM CG7201 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	21321224	X_21321224_SNP [dm3] X_21450197_SNP [dm6]	G	A	7.508e^-17	1.377e^-12	INTRON CG42343	TF binding site mE1_TFBS_HSA
2L	3421318	2L_3421318_SNP [dm3] 2L_3421318_SNP [dm6]	A	G	7.522e^-17	1.377e^-12	INTRON pgant2
2L	3421319	2L_3421319_SNP [dm3] 2L_3421319_SNP [dm6]	A	G	7.522e^-17	1.377e^-12	INTRON pgant2
2L	3421320	2L_3421320_DEL [dm3] 2L_3421320_DEL [dm6]	TGA	T	7.522e^-17	1.377e^-12	INTRON pgant2
2L	3421324	2L_3421324_SNP [dm3] 2L_3421324_SNP [dm6]	A	C	7.522e^-17	1.377e^-12	INTRON pgant2
2L	3421327	2L_3421327_DEL [dm3] 2L_3421327_DEL [dm6]	GAGCAG	ATA	7.522e^-17	1.377e^-12	INTRON pgant2
3L	24296231	3L_24296231_SNP [dm3] 3L_24303131_SNP [dm6]	G	A	2.260e^-16	4.020e^-12	INTERGENIC
3L	7799294	3L_7799294_SNP [dm3] 3L_7806194_SNP [dm6]	A	T	2.262e^-16	4.020e^-12	INTRON CG32369	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	2905285	3L_2905285_SNP [dm3] 3L_2905285_SNP [dm6]	C	A	2.263e^-16	4.020e^-12	INTRON Shab
3R	10837093	3R_10837093_SNP [dm3] 3R_15011371_SNP [dm6]	C	T	2.654e^-16	4.669e^-12	INTERGENIC
2L	14394162	2L_14394162_SNP [dm3] 2L_14394162_SNP [dm6]	G	C	3.921e^-16	6.831e^-12	INTRON elB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12334196	2R_12334196_SNP [dm3] 2R_16446691_SNP [dm6]	C	G	6.626e^-16	1.143e^-11	SYNONYMOUS_CODING CG15925
2L	13360569	2L_13360569_SNP [dm3] 2L_13360569_SNP [dm6]	T	G	7.501e^-16	1.270e^-11	NON_SYNONYMOUS_CODING CG9377	TF binding site mE1_TFBS_cad
3R	10229977	3R_10229977_INS [dm3] 3R_14404255_INS [dm6]	T	CATG	7.501e^-16	1.270e^-11	INTRON cv-c
2L	6611554	2L_6611554_SNP [dm3] 2L_6611554_SNP [dm6]	T	A	2.151e^-15	3.608e^-11	UTR_5_PRIME CG11050 UPSTREAM CG11050 INTRON CG11050	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
X	11183434	X_11183434_DEL [dm3] X_11289401_DEL [dm6]	TAGATT	T	3.512e^-15	5.838e^-11	INTRON CG44422
2R	14422922	2R_14422922_SNP [dm3] 2R_18535417_SNP [dm6]	G	A	1.245e^-14	2.051e^-10	UTR_3_PRIME CG10924 DOWNSTREAM CG10924
2R	4606733	2R_4606733_SNP [dm3] 2R_8719228_SNP [dm6]	G	A	2.066e^-14	3.342e^-10	SYNONYMOUS_CODING CG14767 DOWNSTREAM CG30357	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	4608973	2R_4608973_SNP [dm3] 2R_8721468_SNP [dm6]	C	A	2.066e^-14	3.342e^-10	NON_SYNONYMOUS_CODING CG30357 INTRON CG14767	TF binding site mE1_TFBS_HSA
2R	12334076	2R_12334076_SNP [dm3] 2R_16446571_SNP [dm6]	T	C	2.440e^-14	3.912e^-10	SYNONYMOUS_CODING CG15925
3L	8836133	3L_8836133_SNP [dm3] 3L_8843033_SNP [dm6]	C	T	3.226e^-14	5.128e^-10	INTRON dally
2L	16494378	2L_16494378_SNP [dm3] 2L_16494378_SNP [dm6]	T	G	3.263e^-14	5.140e^-10	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	4609899	2R_4609899_SNP [dm3] 2R_8722394_SNP [dm6]	G	A	3.323e^-14	5.157e^-10	UPSTREAM CG30357 INTRON CG14767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2R	4606946	2R_4606946_SNP [dm3] 2R_8719441_SNP [dm6]	G	A	3.330e^-14	5.157e^-10	SYNONYMOUS_CODING CG14767 DOWNSTREAM CG30357	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	8836131	3L_8836131_SNP [dm3] 3L_8843031_SNP [dm6]	A	C	5.348e^-14	8.167e^-10	INTRON dally
3L	5715401	3L_5715401_SNP [dm3] 3L_5722301_SNP [dm6]	A	G	5.436e^-14	8.167e^-10	INTRON sif
3L	5715426	3L_5715426_DEL [dm3] 3L_5722326_DEL [dm6]	GTAG	T	5.436e^-14	8.167e^-10	INTRON sif
3L	14441894	3L_14441894_SNP [dm3] 3L_14448794_SNP [dm6]	A	T	5.454e^-14	8.167e^-10	UPSTREAM bbg INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	14854314	2R_14854314_SNP [dm3] 2R_18966809_SNP [dm6]	T	G	6.855e^-14	1.018e^-9	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	1868566	2R_1868566_INS [dm3] 2R_5981061_INS [dm6]	C	CGCACCTTCC	8.630e^-14	1.271e^-9	UPSTREAM mle & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26023025	3R_26023025_SNP [dm3] 3R_30197303_SNP [dm6]	G	A	1.438e^-13	2.101e^-9	SYNONYMOUS_CODING CG9743	TF binding site mE1_TFBS_chinmo
2R	11299550	2R_11299550_SNP [dm3] 2R_15412045_SNP [dm6]	G	T	1.501e^-13	2.176e^-9	INTRON CG43729
X	3275194	X_3275194_DEL [dm3] X_3381161_DEL [dm6]	TAA	T	2.211e^-13	3.179e^-9	INTRON dm & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5706065	3R_5706065_SNP [dm3] 3R_9880343_SNP [dm6]	G	A	2.232e^-13	3.184e^-9	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22131550	3R_22131550_SNP [dm3] 3R_26305828_SNP [dm6]	A	T	3.442e^-13	4.851e^-9	INTERGENIC
3R	5697449	3R_5697449_SNP [dm3] 3R_9871727_SNP [dm6]	C	A	3.454e^-13	4.851e^-9	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	3273577	2L_3273577_SNP [dm3] 2L_3273577_SNP [dm6]	T	A	4.273e^-13	5.691e^-9	INTERGENIC
2L	9074547	2L_9074547_SNP [dm3] 2L_9074547_SNP [dm6]	A	C	4.303e^-13	5.691e^-9	INTERGENIC
2L	9074625	2L_9074625_SNP [dm3] 2L_9074625_SNP [dm6]	G	A	4.303e^-13	5.691e^-9	INTERGENIC
2L	9074631	2L_9074631_SNP [dm3] 2L_9074631_SNP [dm6]	G	C	4.303e^-13	5.691e^-9	INTERGENIC
2R	16747789	2R_16747789_SNP [dm3] 2R_20860284_SNP [dm6]	A	C	4.303e^-13	5.691e^-9	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16749959	2R_16749959_SNP [dm3] 2R_20862454_SNP [dm6]	G	A	4.303e^-13	5.691e^-9	INTERGENIC
2R	17605867	2R_17605867_SNP [dm3] 2R_21718362_SNP [dm6]	C	T	4.303e^-13	5.691e^-9	SYNONYMOUS_CODING CG30398 UPSTREAM Tango11 INTRON Tango11	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	5783969	3L_5783969_SNP [dm3] 3L_5790869_SNP [dm6]	G	T	4.303e^-13	5.691e^-9	SYNONYMOUS_CODING Bre1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17978597	2L_17978597_SNP [dm3] 2L_17978597_SNP [dm6]	G	A	5.637e^-13	7.401e^-9	SYNONYMOUS_CODING btv
2R	14469883	2R_14469883_SNP [dm3] 2R_18582378_SNP [dm6]	G	A	6.172e^-13	8.045e^-9	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	17056333	2R_17056333_SNP [dm3] 2R_21168828_SNP [dm6]	C	G	6.512e^-13	8.265e^-9	UPSTREAM hng1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	15669156	3L_15669156_SNP [dm3] 3L_15676056_SNP [dm6]	G	A	6.512e^-13	8.265e^-9	INTERGENIC
3L	15669157	3L_15669157_SNP [dm3] 3L_15676057_SNP [dm6]	G	C	6.512e^-13	8.265e^-9	INTERGENIC
2L	12557441	2L_12557441_SNP [dm3] 2L_12557441_SNP [dm6]	G	A	6.579e^-13	8.265e^-9	INTERGENIC
X	15740717	X_15740717_SNP [dm3] X_15846684_SNP [dm6]	G	T	6.600e^-13	8.265e^-9	INTRON CG8578
3L	10260856	3L_10260856_SNP [dm3] 3L_10267756_SNP [dm6]	C	G	6.626e^-13	8.265e^-9	UPSTREAM can INTERGENIC	regulatory region REDfly_CRMs
3L	1791400	3L_1791400_SNP [dm3] 3L_1791400_SNP [dm6]	C	T	6.660e^-13	8.265e^-9	SYNONYMOUS_CODING dlt INTRON alpha-Spec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	9291573	2R_9291573_SNP [dm3] 2R_13404068_SNP [dm6]	T	A	6.797e^-13	8.265e^-9	INTERGENIC
X	3275043	X_3275043_DEL [dm3] X_3381010_DEL [dm6]	GTGTGGTG	G	6.797e^-13	8.265e^-9	INTRON dm & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3275201	X_3275201_SNP [dm3] X_3381168_SNP [dm6]	G	A	6.797e^-13	8.265e^-9	INTRON dm & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20004946	2R_20004946_SNP [dm3] 2R_24117423_SNP [dm6]	A	G	8.180e^-13	9.881e^-9	INTRON CG3257	TF binding site mE1_TFBS_chinmo
2R	14472338	2R_14472338_SNP [dm3] 2R_18584833_SNP [dm6]	C	A	8.839e^-13	1.054e^-8	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14472339	2R_14472339_SNP [dm3] 2R_18584834_SNP [dm6]	C	A	8.839e^-13	1.054e^-8	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6932118	2R_6932118_SNP [dm3] 2R_11044613_SNP [dm6]	A	T	1.039e^-12	1.230e^-8	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14469982	2R_14469982_SNP [dm3] 2R_18582477_SNP [dm6]	T	C	1.052e^-12	1.230e^-8	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	9892662	X_9892662_SNP [dm3] X_9998629_SNP [dm6]	C	T	1.053e^-12	1.230e^-8	INTRON CG32694
3L	5709697	3L_5709697_SNP [dm3] 3L_5716597_SNP [dm6]	T	A	1.075e^-12	1.249e^-8	INTRON sif
2R	17157438	2R_17157438_SNP [dm3] 2R_21269933_SNP [dm6]	T	A	1.210e^-12	1.396e^-8	INTRON Rgk3
X	10008268	X_10008268_SNP [dm3] X_10114235_SNP [dm6]	C	A	1.284e^-12	1.463e^-8	DOWNSTREAM CR44894 INTRON RhoU	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1316042	X_1316042_SNP [dm3] X_1422009_SNP [dm6]	G	A	1.284e^-12	1.463e^-8	INTRON futsch
2L	15426099	2L_15426099_SNP [dm3] 2L_15426099_SNP [dm6]	T	G	1.539e^-12	1.743e^-8	UPSTREAM wor INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6794947	2L_6794947_SNP [dm3] 2L_6794947_SNP [dm6]	A	C	1.554e^-12	1.748e^-8	UPSTREAM nrv2 INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9290915	2R_9290915_SNP [dm3] 2R_13403410_SNP [dm6]	A	T	1.640e^-12	1.834e^-8	INTERGENIC
2R	5279761	2R_5279761_SNP [dm3] 2R_9392256_SNP [dm6]	G	A	1.788e^-12	1.987e^-8	NON_SYNONYMOUS_CODING l_2_03659	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19088511	3L_19088511_SNP [dm3] 3L_19095411_SNP [dm6]	T	A	1.838e^-12	2.030e^-8	UTR_3_PRIME CG11577 DOWNSTREAM MESR6 & 1 other
3R	11190617	3R_11190617_SNP [dm3] 3R_15364895_SNP [dm6]	C	G	1.850e^-12	2.032e^-8	NON_SYNONYMOUS_CODING CG34404	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10860163	X_10860163_SNP [dm3] X_10966130_SNP [dm6]	A	C	1.893e^-12	2.066e^-8	SYNONYMOUS_CODING C901
3L	10800458	3L_10800458_SNP [dm3] 3L_10807358_SNP [dm6]	T	A	2.372e^-12	2.573e^-8	INTERGENIC
2R	16604531	2R_16604531_SNP [dm3] 2R_20717026_SNP [dm6]	T	C	2.527e^-12	2.648e^-8	INTRON dpr
2R	16604699	2R_16604699_SNP [dm3] 2R_20717194_SNP [dm6]	T	A	2.527e^-12	2.648e^-8	INTRON dpr
2R	19993240	2R_19993240_INS [dm3] 2R_24105717_INS [dm6]	T	TT	2.604e^-12	2.648e^-8	INTRON enok	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5279769	2R_5279769_SNP [dm3] 2R_9392264_SNP [dm6]	C	T	2.638e^-12	2.648e^-8	SYNONYMOUS_CODING l_2_03659	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10369844	2R_10369844_SNP [dm3] 2R_14482339_SNP [dm6]	G	A	2.758e^-12	2.648e^-8	INTRON L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4809202	3L_4809202_SNP [dm3] 3L_4809202_SNP [dm6]	T	C	2.766e^-12	2.648e^-8	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9680466	2L_9680466_SNP [dm3] 2L_9680466_SNP [dm6]	C	T	2.777e^-12	2.648e^-8	INTERGENIC
2L	9680509	2L_9680509_SNP [dm3] 2L_9680509_SNP [dm6]	A	T	2.777e^-12	2.648e^-8	INTERGENIC
2R	4702931	2R_4702931_SNP [dm3] 2R_8815426_SNP [dm6]	C	T	2.777e^-12	2.648e^-8	INTRON sns
2R	4703754	2R_4703754_SNP [dm3] 2R_8816249_SNP [dm6]	C	T	2.777e^-12	2.648e^-8	INTRON sns
2R	4705891	2R_4705891_SNP [dm3] 2R_8818386_SNP [dm6]	C	T	2.777e^-12	2.648e^-8	INTRON sns
2R	4705927	2R_4705927_SNP [dm3] 2R_8818422_SNP [dm6]	T	C	2.777e^-12	2.648e^-8	INTRON sns
2R	4707434	2R_4707434_SNP [dm3] 2R_8819929_SNP [dm6]	T	C	2.777e^-12	2.648e^-8	INTRON sns
3R	18192499	3R_18192499_SNP [dm3] 3R_22366777_SNP [dm6]	C	A	2.777e^-12	2.648e^-8	SYNONYMOUS_CODING CG5380 UPSTREAM CG5382 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	18196044	3R_18196044_SNP [dm3] 3R_22370322_SNP [dm6]	T	A	2.777e^-12	2.648e^-8	INTRON PyK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	18196373	3R_18196373_SNP [dm3] 3R_22370651_SNP [dm6]	A	T	2.777e^-12	2.648e^-8	INTRON PyK	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18200591	3R_18200591_SNP [dm3] 3R_22374869_SNP [dm6]	C	A	2.777e^-12	2.648e^-8	NON_SYNONYMOUS_CODING CG7069	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	18202011	3R_18202011_SNP [dm3] 3R_22376289_SNP [dm6]	C	G	2.777e^-12	2.648e^-8	SYNONYMOUS_CODING CG18596 DOWNSTREAM CG7069	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	18205216	3R_18205216_SNP [dm3] 3R_22379494_SNP [dm6]	T	C	2.777e^-12	2.648e^-8	SYNONYMOUS_CODING CG18596 UPSTREAM CG34149
3R	18207691	3R_18207691_SNP [dm3] 3R_22381969_SNP [dm6]	C	A	2.777e^-12	2.648e^-8	SYNONYMOUS_CODING CG43342 UPSTREAM CG43343 DOWNSTREAM CG34149	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18208549	3R_18208549_SNP [dm3] 3R_22382827_SNP [dm6]	C	A	2.777e^-12	2.648e^-8	NON_SYNONYMOUS_CODING CG43343 DOWNSTREAM CG43342	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4642698	X_4642698_SNP [dm3] X_4748665_SNP [dm6]	G	A	2.777e^-12	2.648e^-8	INTERGENIC
X	4786484	X_4786484_SNP [dm3] X_4892451_SNP [dm6]	G	A	2.777e^-12	2.648e^-8	INTRON CG42594
2R	10364383	2R_10364383_INS [dm3] 2R_14476878_INS [dm6]	G	GA	3.270e^-12	2.929e^-8	INTRON CR44462	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	10354542	2R_10354542_SNP [dm3] 2R_14467037_SNP [dm6]	C	G	3.286e^-12	2.929e^-8	INTERGENIC
2R	10354544	2R_10354544_SNP [dm3] 2R_14467039_SNP [dm6]	G	A	3.286e^-12	2.929e^-8	INTERGENIC
2R	10354553	2R_10354553_SNP [dm3] 2R_14467048_SNP [dm6]	G	A	3.286e^-12	2.929e^-8	INTERGENIC
2R	10354627	2R_10354627_SNP [dm3] 2R_14467122_SNP [dm6]	A	G	3.286e^-12	2.929e^-8	INTERGENIC
2R	10354659	2R_10354659_SNP [dm3] 2R_14467154_SNP [dm6]	C	G	3.286e^-12	2.929e^-8	INTERGENIC
2R	10366198	2R_10366198_SNP [dm3] 2R_14478693_SNP [dm6]	C	T	3.286e^-12	2.929e^-8	DOWNSTREAM CR44462 INTERGENIC	TF binding site mE1_TFBS_cad
2L	1437990	2L_1437990_SNP [dm3] 2L_1437990_SNP [dm6]	G	A	3.313e^-12	2.929e^-8	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
2L	1439364	2L_1439364_SNP [dm3] 2L_1439364_SNP [dm6]	T	A	3.313e^-12	2.929e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1440858	2L_1440858_SNP [dm3] 2L_1440858_SNP [dm6]	C	A	3.313e^-12	2.929e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13165293	2R_13165293_SNP [dm3] 2R_17277788_SNP [dm6]	T	C	3.313e^-12	2.929e^-8	INTRON mbl
3L	1214588	3L_1214588_SNP [dm3] 3L_1214588_SNP [dm6]	C	G	3.313e^-12	2.929e^-8	INTRON mwh
3L	4766413	3L_4766413_SNP [dm3] 3L_4766413_SNP [dm6]	G	T	3.313e^-12	2.929e^-8	SYNONYMOUS_CODING RhoGEF64C	TF binding site mE1_TFBS_chinmo
3R	11800495	3R_11800495_SNP [dm3] 3R_15974773_SNP [dm6]	C	T	3.313e^-12	2.929e^-8	INTRON Hel89B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	19699566	X_19699566_SNP [dm3] X_19805533_SNP [dm6]	G	T	3.313e^-12	2.929e^-8	INTERGENIC
2R	10364386	2R_10364386_INS [dm3] 2R_14476881_INS [dm6]	G	GT	3.582e^-12	3.151e^-8	INTRON CR44462	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	10512059	2R_10512059_SNP [dm3] 2R_14624554_SNP [dm6]	C	T	3.635e^-12	3.154e^-8	DOWNSTREAM snoRNA:Me28S-G2703a & 4 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_zfh1
2L	15959547	2L_15959547_SNP [dm3] 2L_15959547_SNP [dm6]	A	T	3.657e^-12	3.154e^-8	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
3R	25181698	3R_25181698_SNP [dm3] 3R_29355976_SNP [dm6]	C	T	3.673e^-12	3.154e^-8	DOWNSTREAM CR45547 INTERGENIC
3R	25181699	3R_25181699_SNP [dm3] 3R_29355977_SNP [dm6]	A	T	3.673e^-12	3.154e^-8	DOWNSTREAM CR45547 INTERGENIC
3R	25181705	3R_25181705_INS [dm3] 3R_29355983_INS [dm6]	T	TTC	3.673e^-12	3.154e^-8	DOWNSTREAM CR45547 INTERGENIC
3L	2609704	3L_2609704_INS [dm3] 3L_2609704_INS [dm6]	T	TAAACT	3.701e^-12	3.163e^-8	DOWNSTREAM Pxn INTRON Pxn
2R	16604500	2R_16604500_SNP [dm3] 2R_20716995_SNP [dm6]	C	A	3.751e^-12	3.191e^-8	INTRON dpr
2R	10407317	2R_10407317_SNP [dm3] 2R_14519812_SNP [dm6]	A	G	3.909e^-12	3.225e^-8	INTERGENIC
3L	15306417	3L_15306417_SNP [dm3] 3L_15313317_SNP [dm6]	C	G	4.010e^-12	3.225e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26073450	3R_26073450_SNP [dm3] 3R_30247728_SNP [dm6]	C	T	4.078e^-12	3.225e^-8	DOWNSTREAM tRNA:CR31383 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3R	26076977	3R_26076977_SNP [dm3] 3R_30251255_SNP [dm6]	A	G	4.078e^-12	3.225e^-8	SYNONYMOUS_CODING CG9682 DOWNSTREAM CG34299
3R	26080248	3R_26080248_SNP [dm3] 3R_30254526_SNP [dm6]	G	A	4.078e^-12	3.225e^-8	DOWNSTREAM CG18404 INTERGENIC
2L	5508120	2L_5508120_SNP [dm3] 2L_5508120_SNP [dm6]	A	C	4.086e^-12	3.225e^-8	INTERGENIC
2R	18099404	2R_18099404_SNP [dm3] 2R_22211899_SNP [dm6]	G	T	4.089e^-12	3.225e^-8	SYNONYMOUS_CODING CG11291 UPSTREAM ari-2	TF binding site mE1_TFBS_sens
3L	10266910	3L_10266910_SNP [dm3] 3L_10273810_SNP [dm6]	C	T	4.089e^-12	3.225e^-8	SYNONYMOUS_CODING Or67d
3L	10266913	3L_10266913_SNP [dm3] 3L_10273813_SNP [dm6]	A	G	4.089e^-12	3.225e^-8	SYNONYMOUS_CODING Or67d
2R	4702264	2R_4702264_SNP [dm3] 2R_8814759_SNP [dm6]	A	G	4.101e^-12	3.225e^-8	INTRON sns
2R	4705479	2R_4705479_SNP [dm3] 2R_8817974_SNP [dm6]	A	T	4.101e^-12	3.225e^-8	INTRON sns
3R	18202638	3R_18202638_SNP [dm3] 3R_22376916_SNP [dm6]	T	A	4.101e^-12	3.225e^-8	SYNONYMOUS_CODING CG18596	TF binding site mE1_TFBS_sens
3R	18205819	3R_18205819_SNP [dm3] 3R_22380097_SNP [dm6]	C	T	4.101e^-12	3.225e^-8	UPSTREAM CG34149 DOWNSTREAM CG18596 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sbb
3R	5080580	3R_5080580_SNP [dm3] 3R_9254858_SNP [dm6]	A	G	4.101e^-12	3.225e^-8	UPSTREAM CG16734 DOWNSTREAM CR16735 INTERGENIC
2L	2540989	2L_2540989_SNP [dm3] 2L_2540989_SNP [dm6]	G	A	4.107e^-12	3.225e^-8	INTERGENIC
3R	14356202	3R_14356202_DEL [dm3] 3R_18530480_DEL [dm6]	TCGAATAT	T	4.111e^-12	3.225e^-8	INTRON fru
3R	18205297	3R_18205297_SNP [dm3] 3R_22379575_SNP [dm6]	G	A	4.111e^-12	3.225e^-8	SYNONYMOUS_CODING CG18596 UPSTREAM CG34149
3R	18205341	3R_18205341_SNP [dm3] 3R_22379619_SNP [dm6]	T	C	4.111e^-12	3.225e^-8	UPSTREAM CG34149 INTRON CG18596
2R	4702589	2R_4702589_SNP [dm3] 2R_8815084_SNP [dm6]	T	C	4.150e^-12	3.241e^-8	INTRON sns
2L	18507721	2L_18507721_SNP [dm3] 2L_18507721_SNP [dm6]	A	G	4.373e^-12	3.400e^-8	INTERGENIC
2R	10886742	2R_10886742_SNP [dm3] 2R_14999237_SNP [dm6]	C	T	4.824e^-12	3.657e^-8	INTERGENIC
2R	18026841	2R_18026841_SNP [dm3] 2R_22139336_SNP [dm6]	G	T	4.824e^-12	3.657e^-8	UPSTREAM gom DOWNSTREAM CG11269 INTRON a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4703050	2R_4703050_SNP [dm3] 2R_8815545_SNP [dm6]	A	G	4.844e^-12	3.657e^-8	INTRON sns
2R	8331436	2R_8331436_SNP [dm3] 2R_12443931_SNP [dm6]	G	C	4.857e^-12	3.657e^-8	INTRON Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20628682	2L_20628682_SNP [dm3] 2L_20628682_SNP [dm6]	G	T	4.889e^-12	3.657e^-8	INTERGENIC
2L	1444943	2L_1444943_SNP [dm3] 2L_1444943_SNP [dm6]	C	A	4.906e^-12	3.657e^-8	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10221688	2R_10221688_SNP [dm3] 2R_14334183_SNP [dm6]	T	C	4.906e^-12	3.657e^-8	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18093742	2R_18093742_SNP [dm3] 2R_22206237_SNP [dm6]	A	G	4.906e^-12	3.657e^-8	SYNONYMOUS_CODING CG3290 UPSTREAM CG3292
2R	18095688	2R_18095688_SNP [dm3] 2R_22208183_SNP [dm6]	C	T	4.906e^-12	3.657e^-8	UPSTREAM CG3290 DOWNSTREAM CG3264 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2806470	3L_2806470_SNP [dm3] 3L_2806470_SNP [dm6]	C	A	4.911e^-12	3.657e^-8	INTRON CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10354571	2R_10354571_DEL [dm3] 2R_14467066_DEL [dm6]	AAGG	C	4.945e^-12	3.657e^-8	INTERGENIC
2R	17314257	2R_17314257_SNP [dm3] 2R_21426752_SNP [dm6]	T	C	4.945e^-12	3.657e^-8	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	16604702	2R_16604702_DEL [dm3] 2R_20717197_DEL [dm6]	ATAGTG	A	5.334e^-12	3.929e^-8	INTRON dpr
X	5611190	X_5611190_SNP [dm3] X_5717157_SNP [dm6]	C	A	5.417e^-12	3.974e^-8	INTRON CG33080
2R	12325692	2R_12325692_SNP [dm3] 2R_16438187_SNP [dm6]	A	T	5.484e^-12	4.007e^-8	INTERGENIC
3L	10268032	3L_10268032_SNP [dm3] 3L_10274932_SNP [dm6]	T	C	5.693e^-12	4.143e^-8	DOWNSTREAM Or67d INTERGENIC
3R	26075837	3R_26075837_SNP [dm3] 3R_30250115_SNP [dm6]	G	C	5.789e^-12	4.196e^-8	UPSTREAM CG9682 DOWNSTREAM CG34299 INTRON CG34299	TF binding site mE1_TFBS_inv
3R	26077100	3R_26077100_SNP [dm3] 3R_30251378_SNP [dm6]	G	A	6.038e^-12	4.341e^-8	DOWNSTREAM CG34299 INTRON CG9682	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_h
2L	20038096	2L_20038096_SNP [dm3] 2L_20038096_SNP [dm6]	C	G	6.079e^-12	4.341e^-8	INTRON sNPF
3R	18201464	3R_18201464_SNP [dm3] 3R_22375742_SNP [dm6]	T	C	6.131e^-12	4.341e^-8	UPSTREAM CG18596 DOWNSTREAM CG7069 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx
3R	26074427	3R_26074427_SNP [dm3] 3R_30248705_SNP [dm6]	A	G	6.140e^-12	4.341e^-8	UPSTREAM tRNA:CR31383 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_sens
X	4286244	X_4286244_SNP [dm3] X_4392211_SNP [dm6]	C	A	6.205e^-12	4.341e^-8	INTRON CR32773
X	14510245	X_14510245_SNP [dm3] X_14616212_SNP [dm6]	G	C	6.339e^-12	4.341e^-8	INTRON NetA
3L	1528033	3L_1528033_SNP [dm3] 3L_1528033_SNP [dm6]	G	A	6.442e^-12	4.341e^-8	SYNONYMOUS_CODING CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1528528	3L_1528528_SNP [dm3] 3L_1528528_SNP [dm6]	A	T	6.442e^-12	4.341e^-8	DOWNSTREAM Ir62a INTRON CG12090	TF binding site mE1_TFBS_cad
3L	1534407	3L_1534407_SNP [dm3] 3L_1534407_SNP [dm6]	G	T	6.442e^-12	4.341e^-8	UPSTREAM CG12090 DOWNSTREAM CG12091 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1534411	3L_1534411_SNP [dm3] 3L_1534411_SNP [dm6]	C	A	6.442e^-12	4.341e^-8	UPSTREAM CG12090 DOWNSTREAM CG12091 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1536025	3L_1536025_SNP [dm3] 3L_1536025_SNP [dm6]	G	T	6.442e^-12	4.341e^-8	SYNONYMOUS_CODING CG12091	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4156981	3L_4156981_SNP [dm3] 3L_4156981_SNP [dm6]	C	T	6.442e^-12	4.341e^-8	INTRON nab	TF binding site mE1_TFBS_Kr
3L	8744121	3L_8744121_SNP [dm3] 3L_8751021_SNP [dm6]	T	C	6.442e^-12	4.341e^-8	DOWNSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8744514	3L_8744514_SNP [dm3] 3L_8751414_SNP [dm6]	A	T	6.442e^-12	4.341e^-8	EXON CR44527	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8745168	3L_8745168_SNP [dm3] 3L_8752068_SNP [dm6]	C	T	6.442e^-12	4.341e^-8	UPSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8745852	3L_8745852_SNP [dm3] 3L_8752752_SNP [dm6]	G	T	6.442e^-12	4.341e^-8	UPSTREAM Fhos INTERGENIC
3R	14450052	3R_14450052_DEL [dm3] 3R_18624330_DEL [dm6]	CATAGTCATCAGAGCA...	C	6.442e^-12	4.341e^-8	INTRON qin
3R	20909939	3R_20909939_SNP [dm3] 3R_25084217_SNP [dm6]	C	T	6.442e^-12	4.341e^-8	SYNONYMOUS_CODING fd96Ca	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7942781	2R_7942781_SNP [dm3] 2R_12055276_SNP [dm6]	T	A	6.828e^-12	4.341e^-8	DOWNSTREAM CG44314 INTRON CG44314 & 1 other
2R	8012825	2R_8012825_SNP [dm3] 2R_12125320_SNP [dm6]	A	G	6.828e^-12	4.341e^-8	INTERGENIC
2R	8012833	2R_8012833_SNP [dm3] 2R_12125328_SNP [dm6]	C	T	6.828e^-12	4.341e^-8	INTERGENIC
2R	8012835	2R_8012835_SNP [dm3] 2R_12125330_SNP [dm6]	A	G	6.828e^-12	4.341e^-8	INTERGENIC
2R	8012836	2R_8012836_SNP [dm3] 2R_12125331_SNP [dm6]	T	C	6.828e^-12	4.341e^-8	INTERGENIC
2R	8012838	2R_8012838_INS [dm3] 2R_12125333_INS [dm6]	T	TG	6.828e^-12	4.341e^-8	INTERGENIC
2R	8012881	2R_8012881_SNP [dm3] 2R_12125376_SNP [dm6]	C	T	6.828e^-12	4.341e^-8	INTERGENIC
2R	8012900	2R_8012900_SNP [dm3] 2R_12125395_SNP [dm6]	G	A	6.828e^-12	4.341e^-8	INTERGENIC
2R	9077187	2R_9077187_SNP [dm3] 2R_13189682_SNP [dm6]	C	A	6.828e^-12	4.341e^-8	UTR_5_PRIME Kdm4B & 2 others UPSTREAM Kdm4B INTRON Kdm4B	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2R	9079002	2R_9079002_SNP [dm3] 2R_13191497_SNP [dm6]	G	T	6.828e^-12	4.341e^-8	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12410837	3L_12410837_SNP [dm3] 3L_12417737_SNP [dm6]	A	G	6.828e^-12	4.341e^-8	UPSTREAM ArfGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_Med
3L	2487389	3L_2487389_SNP [dm3] 3L_2487389_SNP [dm6]	G	T	6.828e^-12	4.341e^-8	INTRON CG45186
3L	2489474	3L_2489474_SNP [dm3] 3L_2489474_SNP [dm6]	T	C	6.828e^-12	4.341e^-8	UPSTREAM CG1146 INTRON CG45186 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	2489500	3L_2489500_SNP [dm3] 3L_2489500_SNP [dm6]	A	G	6.828e^-12	4.341e^-8	UPSTREAM CG1146 INTRON CG45186 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	5314451	3L_5314451_SNP [dm3] 3L_5321351_SNP [dm6]	T	C	6.828e^-12	4.341e^-8	INTERGENIC
3L	9567488	3L_9567488_SNP [dm3] 3L_9574388_SNP [dm6]	C	A	6.828e^-12	4.341e^-8	INTRON CG42673
X	8202756	X_8202756_SNP [dm3] X_8308723_SNP [dm6]	T	C	6.828e^-12	4.341e^-8	INTRON nAChRalpha3
3R	11804322	3R_11804322_SNP [dm3] 3R_15978600_SNP [dm6]	C	A	7.139e^-12	4.523e^-8	SYNONYMOUS_CODING Hel89B	TF binding site mE1_TFBS_cad
2L	1438045	2L_1438045_SNP [dm3] 2L_1438045_SNP [dm6]	G	C	7.179e^-12	4.533e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
2L	5591371	2L_5591371_SNP [dm3] 2L_5591371_SNP [dm6]	G	T	7.786e^-12	4.782e^-8	INTERGENIC
2R	4592061	2R_4592061_SNP [dm3] 2R_8704556_SNP [dm6]	A	C	7.786e^-12	4.782e^-8	DOWNSTREAM CG12376 INTERGENIC
2R	6940099	2R_6940099_SNP [dm3] 2R_11052594_SNP [dm6]	G	A	7.786e^-12	4.782e^-8	INTRON luna
3L	12471948	3L_12471948_SNP [dm3] 3L_12478848_SNP [dm6]	T	C	7.786e^-12	4.782e^-8	INTRON CG10663
3L	13226233	3L_13226233_SNP [dm3] 3L_13233133_SNP [dm6]	C	A	7.786e^-12	4.782e^-8	INTRON caps
3L	2378523	3L_2378523_SNP [dm3] 3L_2378523_SNP [dm6]	T	C	7.786e^-12	4.782e^-8	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da
3R	24095273	3R_24095273_SNP [dm3] 3R_28269551_SNP [dm6]	C	T	7.786e^-12	4.782e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
X	19788442	X_19788442_SNP [dm3] X_19894409_SNP [dm6]	C	G	7.786e^-12	4.782e^-8	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	3670756	3L_3670756_SNP [dm3] 3L_3670756_SNP [dm6]	A	C	8.158e^-12	4.907e^-8	INTERGENIC
3L	8742928	3L_8742928_SNP [dm3] 3L_8749828_SNP [dm6]	C	A	8.381e^-12	4.907e^-8	UPSTREAM CG13306 INTERGENIC
2R	16325227	2R_16325227_SNP [dm3] 2R_20437722_SNP [dm6]	G	A	8.400e^-12	4.907e^-8	INTRON CG12484
3L	10856907	3L_10856907_SNP [dm3] 3L_10863807_SNP [dm6]	G	A	8.400e^-12	4.907e^-8	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	3278451	X_3278451_SNP [dm3] X_3384418_SNP [dm6]	C	T	8.400e^-12	4.907e^-8	SYNONYMOUS_CODING dm INTRON CR44999
X	3279306	X_3279306_SNP [dm3] X_3385273_SNP [dm6]	C	T	8.400e^-12	4.907e^-8	SYNONYMOUS_CODING dm INTRON CR44999
3L	14655420	3L_14655420_SNP [dm3] 3L_14662320_SNP [dm6]	G	A	8.473e^-12	4.907e^-8	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19900423	3R_19900423_SNP [dm3] 3R_24074701_SNP [dm6]	C	G	8.473e^-12	4.907e^-8	INTRON 4EHP
3R	19900559	3R_19900559_SNP [dm3] 3R_24074837_SNP [dm6]	C	T	8.473e^-12	4.907e^-8	INTRON 4EHP
3R	19900644	3R_19900644_SNP [dm3] 3R_24074922_SNP [dm6]	C	T	8.473e^-12	4.907e^-8	INTRON 4EHP
3R	19900648	3R_19900648_SNP [dm3] 3R_24074926_SNP [dm6]	T	G	8.473e^-12	4.907e^-8	INTRON 4EHP
X	6790684	X_6790684_SNP [dm3] X_6896651_SNP [dm6]	A	C	8.473e^-12	4.907e^-8	INTERGENIC
2R	5874703	2R_5874703_SNP [dm3] 2R_9987198_SNP [dm6]	C	T	8.503e^-12	4.907e^-8	DOWNSTREAM CR45324 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	5874729	2R_5874729_SNP [dm3] 2R_9987224_SNP [dm6]	A	C	8.503e^-12	4.907e^-8	DOWNSTREAM CR45324 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	5874740	2R_5874740_INS [dm3] 2R_9987235_INS [dm6]	A	AAGCA	8.503e^-12	4.907e^-8	DOWNSTREAM CR45324 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	5874747	2R_5874747_SNP [dm3] 2R_9987242_SNP [dm6]	C	G	8.503e^-12	4.907e^-8	DOWNSTREAM CR45324 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	5874774	2R_5874774_SNP [dm3] 2R_9987269_SNP [dm6]	A	T	8.503e^-12	4.907e^-8	DOWNSTREAM CR45324 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	9074789	2R_9074789_SNP [dm3] 2R_13187284_SNP [dm6]	G	A	8.503e^-12	4.907e^-8	SYNONYMOUS_CODING Kdm4B UTR_5_PRIME CG17724 INTRON seq & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15276655	3L_15276655_DEL [dm3] 3L_15283555_DEL [dm6]	ATCCAGAGCGC...	A	8.503e^-12	4.907e^-8	INTERGENIC
2R	10364371	2R_10364371_SNP [dm3] 2R_14476866_SNP [dm6]	C	T	8.684e^-12	4.995e^-8	INTRON CR44462	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	21084704	3L_21084704_SNP [dm3] 3L_21091604_SNP [dm6]	G	A	8.908e^-12	5.046e^-8	INTRON ko
2L	17961114	2L_17961114_SNP [dm3] 2L_17961114_SNP [dm6]	C	A	9.082e^-12	5.046e^-8	INTERGENIC
3R	12746874	3R_12746874_SNP [dm3] 3R_16921152_SNP [dm6]	C	A	9.123e^-12	5.046e^-8	INTRON iab-8	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	11328201	2L_11328201_SNP [dm3] 2L_11328201_SNP [dm6]	C	A	9.299e^-12	5.046e^-8	INTERGENIC
2L	11328204	2L_11328204_SNP [dm3] 2L_11328204_SNP [dm6]	T	A	9.299e^-12	5.046e^-8	INTERGENIC
2L	11374277	2L_11374277_SNP [dm3] 2L_11374277_SNP [dm6]	G	A	9.299e^-12	5.046e^-8	DOWNSTREAM salr INTERGENIC
3L	15637477	3L_15637477_SNP [dm3] 3L_15644377_SNP [dm6]	G	T	9.299e^-12	5.046e^-8	INTRON comm3
3L	8722499	3L_8722499_SNP [dm3] 3L_8729399_SNP [dm6]	T	A	9.299e^-12	5.046e^-8	UPSTREAM Cp19 DOWNSTREAM Cp15 INTERGENIC
3R	19623888	3R_19623888_SNP [dm3] 3R_23798166_SNP [dm6]	G	A	9.299e^-12	5.046e^-8	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25803799	3R_25803799_SNP [dm3] 3R_29978077_SNP [dm6]	C	T	9.299e^-12	5.046e^-8	INTERGENIC
3L	1526042	3L_1526042_SNP [dm3] 3L_1526042_SNP [dm6]	A	G	9.398e^-12	5.046e^-8	INTRON CG12090
3L	18022042	3L_18022042_SNP [dm3] 3L_18028942_SNP [dm6]	A	G	9.398e^-12	5.046e^-8	INTRON Eip75B	TF binding site mE1_TFBS_HSA
3L	8743740	3L_8743740_SNP [dm3] 3L_8750640_SNP [dm6]	C	A	9.398e^-12	5.046e^-8	UPSTREAM CG13306 DOWNSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	10275189	3R_10275189_SNP [dm3] 3R_14449467_SNP [dm6]	T	C	9.412e^-12	5.046e^-8	INTRON cv-c
3R	19704448	3R_19704448_SNP [dm3] 3R_23878726_SNP [dm6]	A	T	9.412e^-12	5.046e^-8	INTRON Pli
3L	1533490	3L_1533490_SNP [dm3] 3L_1533490_SNP [dm6]	T	A	9.436e^-12	5.046e^-8	SPLICE_SITE_REGION CG12090 INTRON CG12090	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1534406	3L_1534406_SNP [dm3] 3L_1534406_SNP [dm6]	G	T	9.436e^-12	5.046e^-8	UPSTREAM CG12090 DOWNSTREAM CG12091 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8757332	3L_8757332_SNP [dm3] 3L_8764232_SNP [dm6]	C	G	9.436e^-12	5.046e^-8	INTRON Fhos
3L	8761055	3L_8761055_SNP [dm3] 3L_8767955_SNP [dm6]	G	T	9.436e^-12	5.046e^-8	INTRON Fhos
3R	13899727	3R_13899727_SNP [dm3] 3R_18074005_SNP [dm6]	C	A	9.436e^-12	5.046e^-8	INTERGENIC	TF binding site mE1_TFBS_cad
3L	5314483	3L_5314483_SNP [dm3] 3L_5321383_SNP [dm6]	C	T	9.438e^-12	5.046e^-8	INTERGENIC
3L	2818439	3L_2818439_SNP [dm3] 3L_2818439_SNP [dm6]	T	C	9.468e^-12	5.046e^-8	INTRON CG43444
3R	13901952	3R_13901952_SNP [dm3] 3R_18076230_SNP [dm6]	C	T	9.468e^-12	5.046e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9435729	3R_9435729_SNP [dm3] 3R_13610007_SNP [dm6]	A	C	9.468e^-12	5.046e^-8	UPSTREAM CG9759 INTERGENIC
X	12119041	X_12119041_SNP [dm3] X_12225008_SNP [dm6]	T	C	9.468e^-12	5.046e^-8	INTRON Ten-a
3L	11630857	3L_11630857_SNP [dm3] 3L_11637757_SNP [dm6]	C	T	9.788e^-12	5.136e^-8	INTRON CG32091
2R	15428222	2R_15428222_SNP [dm3] 2R_19540717_SNP [dm6]	G	C	9.806e^-12	5.136e^-8	INTRON sm
2R	9379416	2R_9379416_SNP [dm3] 2R_13491911_SNP [dm6]	T	C	9.829e^-12	5.136e^-8	INTRON bbc
2R	8012820	2R_8012820_INS [dm3] 2R_12125315_INS [dm6]	C	CCACAATC	9.892e^-12	5.136e^-8	INTERGENIC
3R	13488249	3R_13488249_SNP [dm3] 3R_17662527_SNP [dm6]	C	T	9.892e^-12	5.136e^-8	SYNONYMOUS_CODING CG14322
3R	17319440	3R_17319440_DEL [dm3] 3R_21493718_DEL [dm6]	GATATCCTTA	C	9.892e^-12	5.136e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17319452	3R_17319452_SNP [dm3] 3R_21493730_SNP [dm6]	T	A	9.892e^-12	5.136e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17319453	3R_17319453_SNP [dm3] 3R_21493731_SNP [dm6]	A	C	9.892e^-12	5.136e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9868764	X_9868764_SNP [dm3] X_9974731_SNP [dm6]	G	A	9.892e^-12	5.136e^-8	INTRON CG43386
2R	1994862	2R_1994862_SNP [dm3] 2R_6107357_SNP [dm6]	G	T	9.957e^-12	5.155e^-8	INTRON EcR	TF binding site mE1_TFBS_Kr
3L	1189120	3L_1189120_SNP [dm3] 3L_1189120_SNP [dm6]	T	A	1.005e^-11	5.162e^-8	UPSTREAM CG13912 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3L	1941626	3L_1941626_SNP [dm3] 3L_1941626_SNP [dm6]	A	G	1.005e^-11	5.162e^-8	SYNONYMOUS_CODING Mfap1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	4140569	3R_4140569_SNP [dm3] 3R_8314847_SNP [dm6]	C	T	1.006e^-11	5.162e^-8	UTR_3_PRIME eIF4AIII & 1 other	TF binding site mE1_TFBS_inv
2R	9075745	2R_9075745_SNP [dm3] 2R_13188240_SNP [dm6]	C	T	1.034e^-11	5.246e^-8	INTRON seq & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9078145	2R_9078145_SNP [dm3] 2R_13190640_SNP [dm6]	C	T	1.034e^-11	5.246e^-8	UPSTREAM seq & 2 others INTRON Kdm4B	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11621955	3L_11621955_DEL [dm3] 3L_11628855_DEL [dm6]	ATTA	G	1.034e^-11	5.246e^-8	UPSTREAM mir-3642 INTRON CG18815
3L	11621966	3L_11621966_DEL [dm3] 3L_11628866_DEL [dm6]	GCAAACAAAACTTACCT...	G	1.034e^-11	5.246e^-8	UPSTREAM mir-3642 INTRON CG18815
2L	2657148	2L_2657148_SNP [dm3] 2L_2657148_SNP [dm6]	A	G	1.036e^-11	5.246e^-8	DOWNSTREAM Prosbeta4R2 INTERGENIC
3L	4771336	3L_4771336_SNP [dm3] 3L_4771336_SNP [dm6]	C	T	1.058e^-11	5.339e^-8	INTRON RhoGEF64C
X	11946176	X_11946176_SNP [dm3] X_12052143_SNP [dm6]	T	A	1.062e^-11	5.339e^-8	INTRON CR43960 & 1 other
2R	3607647	2R_3607647_SNP [dm3] 2R_7720142_SNP [dm6]	T	A	1.064e^-11	5.339e^-8	INTRON CG18812
3L	17453901	3L_17453901_SNP [dm3] 3L_17460801_SNP [dm6]	C	A	1.109e^-11	5.550e^-8	DOWNSTREAM CR44565 INTERGENIC
3R	15329194	3R_15329194_SNP [dm3] 3R_19503472_SNP [dm6]	G	A	1.114e^-11	5.559e^-8	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_Trl
2R	8014908	2R_8014908_SNP [dm3] 2R_12127403_SNP [dm6]	C	T	1.133e^-11	5.569e^-8	INTERGENIC
X	4786262	X_4786262_SNP [dm3] X_4892229_SNP [dm6]	A	T	1.134e^-11	5.569e^-8	INTRON CG42594
3R	23212165	3R_23212165_SNP [dm3] 3R_27386443_SNP [dm6]	C	G	1.136e^-11	5.569e^-8	INTRON side
3R	23212193	3R_23212193_SNP [dm3] 3R_27386471_SNP [dm6]	G	A	1.136e^-11	5.569e^-8	INTRON side
3R	23215296	3R_23215296_SNP [dm3] 3R_27389574_SNP [dm6]	G	C	1.136e^-11	5.569e^-8	INTRON side	TF binding site mE1_TFBS_chinmo
2R	6940225	2R_6940225_SNP [dm3] 2R_11052720_SNP [dm6]	A	T	1.137e^-11	5.569e^-8	INTRON luna
X	19256112	X_19256112_SNP [dm3] X_19362079_SNP [dm6]	A	C	1.137e^-11	5.569e^-8	INTRON kek5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	16813477	X_16813477_SNP [dm3] X_16919444_SNP [dm6]	A	C	1.142e^-11	5.577e^-8	INTRON CG4928
3R	9875166	3R_9875166_SNP [dm3] 3R_14049444_SNP [dm6]	C	T	1.157e^-11	5.635e^-8	INTERGENIC
2L	14954724	2L_14954724_SNP [dm3] 2L_14954724_SNP [dm6]	A	C	1.160e^-11	5.635e^-8	INTRON CG42313
2L	1467206	2L_1467206_SNP [dm3] 2L_1467206_SNP [dm6]	G	T	1.170e^-11	5.670e^-8	INTERGENIC
3L	23926465	3L_23926465_SNP [dm3] 3L_23933365_SNP [dm6]	C	A	1.198e^-11	5.732e^-8	INTRON CG40470
X	9086506	X_9086506_SNP [dm3] X_9192473_SNP [dm6]	T	A	1.203e^-11	5.732e^-8	UTR_3_PRIME CG12057 UPSTREAM CG12056	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	1656476	2L_1656476_SNP [dm3] 2L_1656476_SNP [dm6]	G	C	1.205e^-11	5.732e^-8	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
3L	1410867	3L_1410867_SNP [dm3] 3L_1410867_SNP [dm6]	G	T	1.209e^-11	5.732e^-8	UPSTREAM CG9168 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	5011835	3L_5011835_SNP [dm3] 3L_5011835_SNP [dm6]	G	A	1.215e^-11	5.732e^-8	SYNONYMOUS_CODING CG12027 INTRON Con
3L	14545100	3L_14545100_SNP [dm3] 3L_14552000_SNP [dm6]	T	C	1.225e^-11	5.732e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad
3R	6886910	3R_6886910_DEL [dm3] 3R_11061188_DEL [dm6]	TCGATAATGT	A	1.225e^-11	5.732e^-8	INTERGENIC
3R	6886926	3R_6886926_SNP [dm3] 3R_11061204_SNP [dm6]	G	A	1.225e^-11	5.732e^-8	INTERGENIC
3R	6886929	3R_6886929_DEL [dm3] 3R_11061207_DEL [dm6]	TGAGCCCGCTCCAT...	T	1.225e^-11	5.732e^-8	INTERGENIC
3R	6888557	3R_6888557_SNP [dm3] 3R_11062835_SNP [dm6]	T	G	1.225e^-11	5.732e^-8	INTERGENIC
2L	10813114	2L_10813114_SNP [dm3] 2L_10813114_SNP [dm6]	C	T	1.227e^-11	5.732e^-8	INTRON Nos	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15382550	2L_15382550_SNP [dm3] 2L_15382550_SNP [dm6]	G	A	1.227e^-11	5.732e^-8	INTERGENIC
2L	11931557	2L_11931557_SNP [dm3] 2L_11931557_SNP [dm6]	A	G	1.236e^-11	5.732e^-8	INTERGENIC
3L	19119205	3L_19119205_SNP [dm3] 3L_19126105_SNP [dm6]	T	A	1.237e^-11	5.732e^-8	INTRON CG14082
3L	19119211	3L_19119211_SNP [dm3] 3L_19126111_SNP [dm6]	G	A	1.237e^-11	5.732e^-8	INTRON CG14082
3L	19119223	3L_19119223_SNP [dm3] 3L_19126123_SNP [dm6]	A	G	1.237e^-11	5.732e^-8	INTRON CG14082
3R	20163982	3R_20163982_SNP [dm3] 3R_24338260_SNP [dm6]	A	G	1.237e^-11	5.732e^-8	NON_SYNONYMOUS_CODING CG6432 UPSTREAM mir-1015	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1754220	3L_1754220_SNP [dm3] 3L_1754220_SNP [dm6]	C	T	1.255e^-11	5.800e^-8	INTRON Cht2
3R	4610574	3R_4610574_SNP [dm3] 3R_8784852_SNP [dm6]	G	T	1.259e^-11	5.802e^-8	UPSTREAM Pif1A INTRON Pif1B & 1 other	TF binding site mE1_TFBS_cad
3R	17100148	3R_17100148_DEL [dm3] 3R_21274426_DEL [dm6]	CTGATTATTTACGTATCTAC...	T	1.266e^-11	5.824e^-8	SPLICE_SITE_ACCEPTOR CG3301 SPLICE_SITE_REGION CG3301 UTR_3_PRIME CG3301 UPSTREAM CG3308 DOWNSTREAM CG3301 INTRON CG3301 INTRAGENIC CG3301
3R	19900408	3R_19900408_SNP [dm3] 3R_24074686_SNP [dm6]	T	C	1.283e^-11	5.828e^-8	INTRON 4EHP
3R	19900414	3R_19900414_DEL [dm3] 3R_24074692_DEL [dm6]	AATCTA	A	1.283e^-11	5.828e^-8	INTRON 4EHP
3R	19900425	3R_19900425_DEL [dm3] 3R_24074703_DEL [dm6]	AA	A	1.283e^-11	5.828e^-8	INTRON 4EHP
X	8056939	X_8056939_SNP [dm3] X_8162906_SNP [dm6]	T	A	1.283e^-11	5.828e^-8	UPSTREAM CR45536 & 1 other INTERGENIC
3R	19015826	3R_19015826_SNP [dm3] 3R_23190104_SNP [dm6]	T	A	1.284e^-11	5.828e^-8	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	1534571	3L_1534571_SNP [dm3] 3L_1534571_SNP [dm6]	T	C	1.292e^-11	5.828e^-8	UPSTREAM CG12090 DOWNSTREAM CG12091 INTERGENIC
2L	16594707	2L_16594707_SNP [dm3] 2L_16594707_SNP [dm6]	G	A	1.296e^-11	5.828e^-8	INTRON CG42389
2L	16594708	2L_16594708_SNP [dm3] 2L_16594708_SNP [dm6]	T	G	1.296e^-11	5.828e^-8	INTRON CG42389
2L	5212745	2L_5212745_SNP [dm3] 2L_5212745_SNP [dm6]	A	G	1.296e^-11	5.828e^-8	SYNONYMOUS_CODING CG7742 DOWNSTREAM Cyp28d1	TF binding site mE1_TFBS_cad
3L	17566488	3L_17566488_SNP [dm3] 3L_17573388_SNP [dm6]	C	T	1.309e^-11	5.859e^-8	INTRON Eip74EF	TF binding site mE1_TFBS_Trl
3L	10961492	3L_10961492_SNP [dm3] 3L_10968392_SNP [dm6]	G	A	1.334e^-11	5.859e^-8	INTERGENIC
3L	16322124	3L_16322124_SNP [dm3] 3L_16329024_SNP [dm6]	C	T	1.341e^-11	5.859e^-8	SYNONYMOUS_CODING CG13058 UPSTREAM CG33061
2L	7293270	2L_7293270_SNP [dm3] 2L_7293270_SNP [dm6]	G	C	1.345e^-11	5.859e^-8	INTERGENIC	regulatory region REDfly_CRMs
2R	13916364	2R_13916364_SNP [dm3] 2R_18028859_SNP [dm6]	G	T	1.345e^-11	5.859e^-8	INTERGENIC
3L	17541363	3L_17541363_SNP [dm3] 3L_17548263_SNP [dm6]	G	T	1.345e^-11	5.859e^-8	SYNONYMOUS_CODING Jon74E
3L	17541378	3L_17541378_SNP [dm3] 3L_17548278_SNP [dm6]	C	T	1.345e^-11	5.859e^-8	SYNONYMOUS_CODING Jon74E
3L	2805769	3L_2805769_SNP [dm3] 3L_2805769_SNP [dm6]	G	T	1.345e^-11	5.859e^-8	INTRON CG43444
3L	2805775	3L_2805775_DEL [dm3] 3L_2805775_DEL [dm6]	TGCATTTTTT	T	1.345e^-11	5.859e^-8	INTRON CG43444
3L	2813433	3L_2813433_SNP [dm3] 3L_2813433_SNP [dm6]	C	T	1.345e^-11	5.859e^-8	INTRON CG43444
3L	5945340	3L_5945340_SNP [dm3] 3L_5952240_SNP [dm6]	G	A	1.345e^-11	5.859e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16302426	X_16302426_SNP [dm3] X_16408393_SNP [dm6]	T	G	1.345e^-11	5.859e^-8	UTR_5_PRIME CG4301 INTRON CG4301
X	3273509	X_3273509_SNP [dm3] X_3379476_SNP [dm6]	T	C	1.345e^-11	5.859e^-8	INTRON dm & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1956699	2L_1956699_SNP [dm3] 2L_1956699_SNP [dm6]	G	A	1.386e^-11	6.015e^-8	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	5530346	3R_5530346_SNP [dm3] 3R_9704624_SNP [dm6]	G	A	1.388e^-11	6.015e^-8	INTRON Unc-115a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	900505	2R_900505_SNP [dm3] 2R_5013000_SNP [dm6]	A	G	1.422e^-11	6.150e^-8	INTRON Ir41a	transposable element FlyBase
2L	9367506	2L_9367506_SNP [dm3] 2L_9367506_SNP [dm6]	G	T	1.451e^-11	6.249e^-8	UPSTREAM CG34181 INTERGENIC
3R	5140182	3R_5140182_SNP [dm3] 3R_9314460_SNP [dm6]	G	T	1.455e^-11	6.249e^-8	INTRON CG8861
2L	3594130	2L_3594130_SNP [dm3] 2L_3594130_SNP [dm6]	G	T	1.459e^-11	6.249e^-8	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13141865	3L_13141865_SNP [dm3] 3L_13148765_SNP [dm6]	C	T	1.465e^-11	6.249e^-8	INTERGENIC
3R	13557860	3R_13557860_SNP [dm3] 3R_17732138_SNP [dm6]	G	A	1.468e^-11	6.249e^-8	SYNONYMOUS_CODING Lgr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13557866	3R_13557866_SNP [dm3] 3R_17732144_SNP [dm6]	C	T	1.468e^-11	6.249e^-8	SYNONYMOUS_CODING Lgr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	12410911	3L_12410911_SNP [dm3] 3L_12417811_SNP [dm6]	C	A	1.470e^-11	6.249e^-8	UPSTREAM ArfGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	1941593	3L_1941593_SNP [dm3] 3L_1941593_SNP [dm6]	A	G	1.474e^-11	6.249e^-8	SYNONYMOUS_CODING Mfap1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	19474735	3R_19474735_SNP [dm3] 3R_23649013_SNP [dm6]	C	G	1.477e^-11	6.249e^-8	INTRON CG31145
2R	8966094	2R_8966094_SNP [dm3] 2R_13078589_SNP [dm6]	T	G	1.482e^-11	6.249e^-8	INTRON Drl-2	insulator Insulator_Class_II.mE01
3L	22906841	3L_22906841_SNP [dm3] 3L_22913741_SNP [dm6]	T	C	1.483e^-11	6.249e^-8	SYNONYMOUS_CODING CG12768	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18628036	3R_18628036_SNP [dm3] 3R_22802314_SNP [dm6]	T	C	1.498e^-11	6.282e^-8	INTERGENIC
3R	20219320	3R_20219320_SNP [dm3] 3R_24393598_SNP [dm6]	T	C	1.498e^-11	6.282e^-8	SYNONYMOUS_CODING CG13616 UTR_3_PRIME CG13616 DOWNSTREAM nAChRalpha1
2R	1991703	2R_1991703_SNP [dm3] 2R_6104198_SNP [dm6]	T	A	1.507e^-11	6.308e^-8	INTRON EcR
2R	515829	2R_515829_SNP [dm3] 2R_4628324_SNP [dm6]	A	G	1.516e^-11	6.329e^-8	INTERGENIC
3L	11547592	3L_11547592_SNP [dm3] 3L_11554492_SNP [dm6]	C	T	1.521e^-11	6.337e^-8	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	11307999	3L_11307999_SNP [dm3] 3L_11314899_SNP [dm6]	G	C	1.558e^-11	6.473e^-8	UPSTREAM CR44361 INTERGENIC
2R	3607634	2R_3607634_SNP [dm3] 2R_7720129_SNP [dm6]	A	G	1.579e^-11	6.546e^-8	INTRON CG18812
2L	5212549	2L_5212549_SNP [dm3] 2L_5212549_SNP [dm6]	C	T	1.626e^-11	6.725e^-8	SYNONYMOUS_CODING CG7742 DOWNSTREAM Cyp28d1	TF binding site mE1_TFBS_cad
2R	9378414	2R_9378414_INS [dm3] 2R_13490909_INS [dm6]	T	TT	1.629e^-11	6.725e^-8	INTRON bbc
X	7241985	X_7241985_SNP [dm3] X_7347952_SNP [dm6]	T	G	1.660e^-11	6.825e^-8	UPSTREAM CG15034 INTRON CR44357 & 1 other
2L	1919302	2L_1919302_DEL [dm3] 2L_1919302_DEL [dm6]	TCT	G	1.661e^-11	6.825e^-8	INTRON CG7337
2L	5591934	2L_5591934_SNP [dm3] 2L_5591934_SNP [dm6]	G	A	1.669e^-11	6.841e^-8	INTERGENIC
2R	15289851	2R_15289851_SNP [dm3] 2R_19402346_SNP [dm6]	G	T	1.677e^-11	6.858e^-8	NON_SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10227518	2L_10227518_SNP [dm3] 2L_10227518_SNP [dm6]	T	C	1.688e^-11	6.873e^-8	UPSTREAM CG5708 DOWNSTREAM CG5694 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5463113	3L_5463113_SNP [dm3] 3L_5470013_SNP [dm6]	C	T	1.688e^-11	6.873e^-8	INTERGENIC
3R	20421911	3R_20421911_SNP [dm3] 3R_24596189_SNP [dm6]	T	A	1.721e^-11	6.993e^-8	INTRON mld	TF binding site mE1_TFBS_HSA
2R	16150980	2R_16150980_SNP [dm3] 2R_20263475_SNP [dm6]	G	A	1.744e^-11	7.062e^-8	SYNONYMOUS_CODING plu UPSTREAM PCNA & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	6886924	3R_6886924_SNP [dm3] 3R_11061202_SNP [dm6]	T	A	1.747e^-11	7.062e^-8	INTERGENIC
3R	19497968	3R_19497968_SNP [dm3] 3R_23672246_SNP [dm6]	G	C	1.750e^-11	7.062e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	3050562	3R_3050562_SNP [dm3] 3R_7224840_SNP [dm6]	G	A	1.767e^-11	7.091e^-8	INTRON CG14608
3R	20401315	3R_20401315_DEL [dm3] 3R_24575593_DEL [dm6]	ATGTTCAA	A	1.769e^-11	7.091e^-8	INTRON CG13624
3R	20401326	3R_20401326_INS [dm3] 3R_24575604_INS [dm6]	G	GAG	1.769e^-11	7.091e^-8	INTRON CG13624
3R	3054391	3R_3054391_SNP [dm3] 3R_7228669_SNP [dm6]	A	T	1.773e^-11	7.091e^-8	INTRON CG14608
2L	11062697	2L_11062697_SNP [dm3] 2L_11062697_SNP [dm6]	C	T	1.795e^-11	7.149e^-8	INTRON Samuel
2L	20467468	2L_20467468_DEL [dm3] 2L_20467468_DEL [dm6]	ACAAACCCGA	A	1.795e^-11	7.149e^-8	INTRON CR44980
X	3922599	X_3922599_SNP [dm3] X_4028566_SNP [dm6]	A	G	1.813e^-11	7.188e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17099804	3R_17099804_INS [dm3] 3R_21274082_INS [dm6]	T	TG	1.815e^-11	7.188e^-8	UPSTREAM CG3308 DOWNSTREAM CG3301 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12411070	3L_12411070_SNP [dm3] 3L_12417970_SNP [dm6]	A	G	1.817e^-11	7.188e^-8	UPSTREAM ArfGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20860435	X_20860435_SNP [dm3] X_20989408_SNP [dm6]	G	A	1.828e^-11	7.217e^-8	INTERGENIC
3L	11547366	3L_11547366_SNP [dm3] 3L_11554266_SNP [dm6]	A	C	1.855e^-11	7.308e^-8	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	19119134	3L_19119134_SNP [dm3] 3L_19126034_SNP [dm6]	C	T	1.873e^-11	7.311e^-8	INTRON CG14082
2L	10036773	2L_10036773_SNP [dm3] 2L_10036773_SNP [dm6]	G	C	1.875e^-11	7.311e^-8	INTRON obst-B
3L	1148895	3L_1148895_SNP [dm3] 3L_1148895_SNP [dm6]	C	T	1.876e^-11	7.311e^-8	INTRON bab2
3L	6908891	3L_6908891_SNP [dm3] 3L_6915791_SNP [dm6]	A	G	1.876e^-11	7.311e^-8	UPSTREAM Prat2 INTERGENIC
3L	8632874	3L_8632874_SNP [dm3] 3L_8639774_SNP [dm6]	A	G	1.876e^-11	7.311e^-8	UPSTREAM Cpr66D DOWNSTREAM Zasp66 INTERGENIC
3L	2531787	3L_2531787_INS [dm3] 3L_2531787_INS [dm6]	T	TT	1.908e^-11	7.419e^-8	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	7622516	3L_7622516_SNP [dm3] 3L_7629416_SNP [dm6]	C	G	1.912e^-11	7.419e^-8	INTRON CG33275
2R	12169980	2R_12169980_SNP [dm3] 2R_16282475_SNP [dm6]	C	T	1.933e^-11	7.483e^-8	SYNONYMOUS_CODING CG7755 UPSTREAM CG9068 DOWNSTREAM CG15705	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14508508	3R_14508508_SNP [dm3] 3R_18682786_SNP [dm6]	T	C	1.961e^-11	7.578e^-8	SPLICE_SITE_REGION CG7708 INTRON CG7708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8023631	2L_8023631_SNP [dm3] 2L_8023631_SNP [dm6]	C	G	2.011e^-11	7.752e^-8	INTRON Tg
2R	8966099	2R_8966099_SNP [dm3] 2R_13078594_SNP [dm6]	G	C	2.054e^-11	7.903e^-8	INTRON Drl-2	insulator Insulator_Class_II.mE01
X	15797809	X_15797809_SNP [dm3] X_15903776_SNP [dm6]	A	T	2.073e^-11	7.959e^-8	INTRON shi
2L	16661811	2L_16661811_SNP [dm3] 2L_16661811_SNP [dm6]	C	G	2.085e^-11	7.986e^-8	UTR_3_PRIME CG42389	TF binding site mE1_TFBS_cad
2L	10636847	2L_10636847_SNP [dm3] 2L_10636847_SNP [dm6]	T	A	2.123e^-11	8.115e^-8	INTRON CG7329
3R	17093401	3R_17093401_SNP [dm3] 3R_21267679_SNP [dm6]	A	G	2.129e^-11	8.122e^-8	SYNONYMOUS_CODING Rab1
3L	9811676	3L_9811676_INS [dm3] 3L_9818576_INS [dm6]	T	TC	2.189e^-11	8.288e^-8	UPSTREAM CG43897 INTRON CG43897	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	1022541	3L_1022541_SNP [dm3] 3L_1022541_SNP [dm6]	G	T	2.191e^-11	8.288e^-8	INTRON trio
3L	12410918	3L_12410918_SNP [dm3] 3L_12417818_SNP [dm6]	A	G	2.229e^-11	8.288e^-8	UPSTREAM ArfGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	12410920	3L_12410920_SNP [dm3] 3L_12417820_SNP [dm6]	G	C	2.229e^-11	8.288e^-8	UPSTREAM ArfGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	12410923	3L_12410923_SNP [dm3] 3L_12417823_SNP [dm6]	T	A	2.229e^-11	8.288e^-8	UPSTREAM ArfGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	12410924	3L_12410924_SNP [dm3] 3L_12417824_SNP [dm6]	T	A	2.229e^-11	8.288e^-8	UPSTREAM ArfGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	11547627	3L_11547627_SNP [dm3] 3L_11554527_SNP [dm6]	A	C	2.234e^-11	8.288e^-8	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	7431226	3L_7431226_SNP [dm3] 3L_7438126_SNP [dm6]	G	T	2.272e^-11	8.288e^-8	UPSTREAM CG14835 DOWNSTREAM sphinx1 INTRON CG42458
2L	1956697	2L_1956697_SNP [dm3] 2L_1956697_SNP [dm6]	C	T	2.280e^-11	8.288e^-8	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	14490237	2R_14490237_SNP [dm3] 2R_18602732_SNP [dm6]	C	T	2.301e^-11	8.288e^-8	INTRON GEFmeso
3L	2186211	3L_2186211_SNP [dm3] 3L_2186211_SNP [dm6]	C	T	2.301e^-11	8.288e^-8	SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_twi
3L	3260451	3L_3260451_SNP [dm3] 3L_3260451_SNP [dm6]	A	T	2.301e^-11	8.288e^-8	INTRON ckd
3L	4995170	3L_4995170_SNP [dm3] 3L_4995170_SNP [dm6]	G	A	2.301e^-11	8.288e^-8	NON_SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3L	4995221	3L_4995221_SNP [dm3] 3L_4995221_SNP [dm6]	C	T	2.301e^-11	8.288e^-8	NON_SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_hb mE1_TFBS_sens
3L	4995233	3L_4995233_SNP [dm3] 3L_4995233_SNP [dm6]	G	T	2.301e^-11	8.288e^-8	SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_hb mE1_TFBS_sens
3L	4995242	3L_4995242_SNP [dm3] 3L_4995242_SNP [dm6]	T	C	2.301e^-11	8.288e^-8	NON_SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_hb mE1_TFBS_sens
3L	5906261	3L_5906261_SNP [dm3] 3L_5913161_SNP [dm6]	G	A	2.301e^-11	8.288e^-8	INTRON CG13288
3R	13900878	3R_13900878_SNP [dm3] 3R_18075156_SNP [dm6]	A	C	2.301e^-11	8.288e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17170068	3R_17170068_SNP [dm3] 3R_21344346_SNP [dm6]	C	A	2.301e^-11	8.288e^-8	INTRON CG16791
3R	18755087	3R_18755087_SNP [dm3] 3R_22929365_SNP [dm6]	C	T	2.301e^-11	8.288e^-8	INTRON klg
3R	25067190	3R_25067190_SNP [dm3] 3R_29241468_SNP [dm6]	C	T	2.301e^-11	8.288e^-8	SYNONYMOUS_CODING CG31445	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26657580	3R_26657580_SNP [dm3] 3R_30831858_SNP [dm6]	G	C	2.301e^-11	8.288e^-8	INTRON CG15544
3R	7134569	3R_7134569_SNP [dm3] 3R_11308847_SNP [dm6]	C	T	2.301e^-11	8.288e^-8	INTERGENIC
3R	8968356	3R_8968356_SNP [dm3] 3R_13142634_SNP [dm6]	G	T	2.301e^-11	8.288e^-8	INTRON timeout & 2 others
X	16778286	X_16778286_SNP [dm3] X_16884253_SNP [dm6]	A	C	2.301e^-11	8.288e^-8	UTR_5_PRIME CG9104 UPSTREAM Rcp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16867580	X_16867580_SNP [dm3] X_16973547_SNP [dm6]	G	T	2.301e^-11	8.288e^-8	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5464166	X_5464166_SNP [dm3] X_5570133_SNP [dm6]	T	C	2.301e^-11	8.288e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_eve mE1_TFBS_HSA
X	5464167	X_5464167_SNP [dm3] X_5570134_SNP [dm6]	T	C	2.301e^-11	8.288e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_eve mE1_TFBS_HSA
2L	3456512	2L_3456512_SNP [dm3] 2L_3456512_SNP [dm6]	G	T	2.371e^-11	8.491e^-8	SYNONYMOUS_CODING Cog3 UPSTREAM Sec5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3456515	2L_3456515_SNP [dm3] 2L_3456515_SNP [dm6]	C	T	2.371e^-11	8.491e^-8	SYNONYMOUS_CODING Cog3 UPSTREAM Sec5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3456518	2L_3456518_SNP [dm3] 2L_3456518_SNP [dm6]	T	C	2.371e^-11	8.491e^-8	SYNONYMOUS_CODING Cog3 UPSTREAM Sec5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9635540	2L_9635540_SNP [dm3] 2L_9635540_SNP [dm6]	C	T	2.414e^-11	8.627e^-8	INTRON Apoltp
3R	26251764	3R_26251764_SNP [dm3] 3R_30426042_SNP [dm6]	G	C	2.419e^-11	8.627e^-8	UTR_3_PRIME CG2218 UPSTREAM CG15536	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13359825	3L_13359825_SNP [dm3] 3L_13366725_SNP [dm6]	C	A	2.498e^-11	8.887e^-8	INTERGENIC
2L	5592303	2L_5592303_SNP [dm3] 2L_5592303_SNP [dm6]	T	A	2.502e^-11	8.887e^-8	INTERGENIC
2L	16429995	2L_16429995_SNP [dm3] 2L_16429995_SNP [dm6]	G	A	2.560e^-11	9.078e^-8	INTRON CG5888
2L	10578121	2L_10578121_SNP [dm3] 2L_10578121_SNP [dm6]	C	T	2.594e^-11	9.180e^-8	UPSTREAM w-cup INTRON Trim9
3R	6886508	3R_6886508_SNP [dm3] 3R_11060786_SNP [dm6]	A	C	2.608e^-11	9.212e^-8	INTERGENIC
3R	12997579	3R_12997579_SNP [dm3] 3R_17171857_SNP [dm6]	C	A	2.688e^-11	9.476e^-8	INTRON Mur89F
2L	5230506	2L_5230506_SNP [dm3] 2L_5230506_SNP [dm6]	G	T	2.756e^-11	9.698e^-8	INTRON tkv
2L	14248530	2L_14248530_DEL [dm3] 2L_14248530_DEL [dm6]	GG	G	2.792e^-11	9.783e^-8	INTERGENIC
3L	11708046	3L_11708046_SNP [dm3] 3L_11714946_SNP [dm6]	C	A	2.802e^-11	9.783e^-8	INTRON CG14132	TF binding site mE1_TFBS_Trl
3L	11708085	3L_11708085_INS [dm3] 3L_11714985_INS [dm6]	T	AA	2.802e^-11	9.783e^-8	INTRON CG14132	TF binding site mE1_TFBS_Trl
3L	16923478	3L_16923478_SNP [dm3] 3L_16930378_SNP [dm6]	T	A	2.802e^-11	9.783e^-8	SYNONYMOUS_CODING CG11905 DOWNSTREAM CG11905 INTRON CG11905	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	6279074	3L_6279074_SNP [dm3] 3L_6285974_SNP [dm6]	G	A	2.830e^-11	9.862e^-8	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	24161321	3L_24161321_SNP [dm3] 3L_24168221_SNP [dm6]	G	C	2.904e^-11	1.010e^-7	INTRON Snap25	TF binding site mE1_TFBS_sens
2R	12748702	2R_12748702_DEL [dm3] 2R_16861197_DEL [dm6]	AA	A	2.995e^-11	1.038e^-7	UTR_3_PRIME Dek DOWNSTREAM Dek & 1 other
3R	18755017	3R_18755017_SNP [dm3] 3R_22929295_SNP [dm6]	T	A	3.158e^-11	1.038e^-7	INTRON klg
3R	20374416	3R_20374416_SNP [dm3] 3R_24548694_SNP [dm6]	T	G	3.158e^-11	1.038e^-7	UPSTREAM Esyt2 INTRON Esyt2	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2L	5447840	2L_5447840_SNP [dm3] 2L_5447840_SNP [dm6]	G	A	3.159e^-11	1.038e^-7	INTERGENIC
2L	3854802	2L_3854802_SNP [dm3] 2L_3854802_SNP [dm6]	G	A	3.201e^-11	1.038e^-7	EXON CR45449	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	17713667	3L_17713667_SNP [dm3] 3L_17720567_SNP [dm6]	A	G	3.264e^-11	1.038e^-7	UPSTREAM CheB74a INTRON Ccn	TF binding site mE1_TFBS_kn
3R	21652675	3R_21652675_SNP [dm3] 3R_25826953_SNP [dm6]	A	T	3.264e^-11	1.038e^-7	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21652677	3R_21652677_SNP [dm3] 3R_25826955_SNP [dm6]	C	A	3.264e^-11	1.038e^-7	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5001247	3L_5001247_SNP [dm3] 3L_5001247_SNP [dm6]	A	T	3.294e^-11	1.038e^-7	INTRON Con
3R	24973194	3R_24973194_SNP [dm3] 3R_29147472_SNP [dm6]	T	C	3.294e^-11	1.038e^-7	SYNONYMOUS_CODING CG11882 UPSTREAM CG14511 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	24973226	3R_24973226_SNP [dm3] 3R_29147504_SNP [dm6]	A	T	3.294e^-11	1.038e^-7	NON_SYNONYMOUS_CODING CG11882 UPSTREAM CG14511 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	24973275	3R_24973275_SNP [dm3] 3R_29147553_SNP [dm6]	G	A	3.294e^-11	1.038e^-7	SYNONYMOUS_CODING CG11882 UPSTREAM CG14511 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	7886590	2R_7886590_SNP [dm3] 2R_11999085_SNP [dm6]	A	G	3.295e^-11	1.038e^-7	INTERGENIC
2L	12568535	2L_12568535_SNP [dm3] 2L_12568535_SNP [dm6]	A	T	3.296e^-11	1.038e^-7	INTERGENIC
3L	9053424	3L_9053424_SNP [dm3] 3L_9060324_SNP [dm6]	A	T	3.296e^-11	1.038e^-7	INTRON Argk
3R	18002166	3R_18002166_SNP [dm3] 3R_22176444_SNP [dm6]	C	T	3.298e^-11	1.038e^-7	INTRON SKIP
3R	18002182	3R_18002182_SNP [dm3] 3R_22176460_SNP [dm6]	G	T	3.298e^-11	1.038e^-7	INTRON SKIP
3R	18002183	3R_18002183_SNP [dm3] 3R_22176461_SNP [dm6]	A	G	3.298e^-11	1.038e^-7	INTRON SKIP
3R	19491791	3R_19491791_SNP [dm3] 3R_23666069_SNP [dm6]	C	T	3.298e^-11	1.038e^-7	INTRON CG31145	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16996035	2R_16996035_SNP [dm3] 2R_21108530_SNP [dm6]	G	A	3.323e^-11	1.038e^-7	INTRON ktub
2R	17496210	2R_17496210_SNP [dm3] 2R_21608705_SNP [dm6]	T	A	3.323e^-11	1.038e^-7	SYNONYMOUS_CODING CG15673 UPSTREAM CG10433 DOWNSTREAM CR43243
3R	14441961	3R_14441961_SNP [dm3] 3R_18616239_SNP [dm6]	A	T	3.323e^-11	1.038e^-7	DOWNSTREAM CG7695 INTRON qin & 1 other
3R	25258418	3R_25258418_SNP [dm3] 3R_29432696_SNP [dm6]	G	A	3.323e^-11	1.038e^-7	INTRON Ptp99A
2L	11798642	2L_11798642_SNP [dm3] 2L_11798642_SNP [dm6]	C	G	3.364e^-11	1.038e^-7	UPSTREAM snoRNA:Me18S-A934 INTRON crol	TF binding site mE1_TFBS_cad
2R	9818808	2R_9818808_SNP [dm3] 2R_13931303_SNP [dm6]	A	G	3.375e^-11	1.038e^-7	INTRON shot
3R	24877894	3R_24877894_SNP [dm3] 3R_29052172_SNP [dm6]	A	T	3.375e^-11	1.038e^-7	UTR_3_PRIME CG11841 UPSTREAM CG11842	TF binding site mE1_TFBS_cad
3R	3751508	3R_3751508_SNP [dm3] 3R_7925786_SNP [dm6]	A	T	3.375e^-11	1.038e^-7	INTRON dsx
3R	3751516	3R_3751516_SNP [dm3] 3R_7925794_SNP [dm6]	C	G	3.375e^-11	1.038e^-7	INTRON dsx
2L	6587407	2L_6587407_INS [dm3] 2L_6587407_INS [dm6]	G	GTG	3.385e^-11	1.038e^-7	INTRON CG11319
2R	18637390	2R_18637390_SNP [dm3] 2R_22749885_SNP [dm6]	G	A	3.385e^-11	1.038e^-7	INTRON CG42260
3L	292574	3L_292574_SNP [dm3] 3L_292574_SNP [dm6]	C	T	3.385e^-11	1.038e^-7	UPSTREAM RhoGEF3 INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	6790645	3L_6790645_SNP [dm3] 3L_6797545_SNP [dm6]	A	G	3.385e^-11	1.038e^-7	INTERGENIC
X	1904151	X_1904151_SNP [dm3] X_2010118_SNP [dm6]	C	G	3.385e^-11	1.038e^-7	UPSTREAM mir-2496 & 2 others EXON CR45478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	19911668	3L_19911668_SNP [dm3] 3L_19918568_SNP [dm6]	G	C	3.441e^-11	1.038e^-7	UTR_3_PRIME Su_z_12 DOWNSTREAM Rpn1
2L	12091893	2L_12091893_SNP [dm3] 2L_12091893_SNP [dm6]	G	A	3.448e^-11	1.038e^-7	UTR_5_PRIME Pex19 DOWNSTREAM CR44594	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18861636	2L_18861636_SNP [dm3] 2L_18861636_SNP [dm6]	A	T	3.475e^-11	1.038e^-7	INTRON tup	TF binding site BDTNP1_TFBS_da
2R	4583494	2R_4583494_SNP [dm3] 2R_8695989_SNP [dm6]	T	C	3.532e^-11	1.038e^-7	UPSTREAM CG8738 & 1 other INTRON CG8586
2L	10490988	2L_10490988_SNP [dm3] 2L_10490988_SNP [dm6]	G	A	3.545e^-11	1.038e^-7	NON_SYNONYMOUS_CODING CG13144 DOWNSTREAM CG6144 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3987645	2L_3987645_SNP [dm3] 2L_3987645_SNP [dm6]	C	T	3.545e^-11	1.038e^-7	INTRON fred
2L	3987655	2L_3987655_SNP [dm3] 2L_3987655_SNP [dm6]	G	A	3.545e^-11	1.038e^-7	INTRON fred
2L	6752383	2L_6752383_SNP [dm3] 2L_6752383_SNP [dm6]	A	T	3.545e^-11	1.038e^-7	INTRON CG11221
2L	994668	2L_994668_SNP [dm3] 2L_994668_SNP [dm6]	G	A	3.545e^-11	1.038e^-7	INTERGENIC
2L	995360	2L_995360_SNP [dm3] 2L_995360_SNP [dm6]	C	T	3.545e^-11	1.038e^-7	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	995690	2L_995690_SNP [dm3] 2L_995690_SNP [dm6]	A	G	3.545e^-11	1.038e^-7	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10175904	2R_10175904_SNP [dm3] 2R_14288399_SNP [dm6]	T	G	3.545e^-11	1.038e^-7	UPSTREAM Ih INTRON Ih
2R	10606155	2R_10606155_SNP [dm3] 2R_14718650_SNP [dm6]	T	A	3.545e^-11	1.038e^-7	INTERGENIC
2R	10646161	2R_10646161_SNP [dm3] 2R_14758656_SNP [dm6]	A	G	3.545e^-11	1.038e^-7	UPSTREAM Trs31 DOWNSTREAM Spred INTRON CG12857	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	17304187	2R_17304187_SNP [dm3] 2R_21416682_SNP [dm6]	T	A	3.545e^-11	1.038e^-7	INTRON Sdc
2R	17305740	2R_17305740_SNP [dm3] 2R_21418235_SNP [dm6]	A	G	3.545e^-11	1.038e^-7	INTRON Sdc
2R	17423382	2R_17423382_SNP [dm3] 2R_21535877_SNP [dm6]	G	A	3.545e^-11	1.038e^-7	SYNONYMOUS_CODING CG30286 UTR_3_PRIME CG30286 INTRON Egfr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	18208841	2R_18208841_SNP [dm3] 2R_22321336_SNP [dm6]	T	G	3.545e^-11	1.038e^-7	UPSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_twi
2R	18208842	2R_18208842_SNP [dm3] 2R_22321337_SNP [dm6]	T	A	3.545e^-11	1.038e^-7	UPSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_twi
2R	4582051	2R_4582051_SNP [dm3] 2R_8694546_SNP [dm6]	C	G	3.545e^-11	1.038e^-7	SYNONYMOUS_CODING CG8586	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	4582261	2R_4582261_SNP [dm3] 2R_8694756_SNP [dm6]	T	C	3.545e^-11	1.038e^-7	INTRON CG8586	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	4582597	2R_4582597_SNP [dm3] 2R_8695092_SNP [dm6]	T	C	3.545e^-11	1.038e^-7	SYNONYMOUS_CODING CG8586	TF binding site mE1_TFBS_cad
2R	4715913	2R_4715913_SNP [dm3] 2R_8828408_SNP [dm6]	T	C	3.545e^-11	1.038e^-7	DOWNSTREAM CG30350 INTRON sns	TF binding site mE1_TFBS_chinmo
2R	4716150	2R_4716150_SNP [dm3] 2R_8828645_SNP [dm6]	C	T	3.545e^-11	1.038e^-7	DOWNSTREAM CG30350 INTRON sns	TF binding site mE1_TFBS_chinmo
2R	4719459	2R_4719459_INS [dm3] 2R_8831954_INS [dm6]	GG	TCATAATTCATAA...	3.545e^-11	1.038e^-7	SPLICE_SITE_REGION sns INTRON sns	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	4720010	2R_4720010_SNP [dm3] 2R_8832505_SNP [dm6]	T	G	3.545e^-11	1.038e^-7	INTRON sns	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4720163	2R_4720163_SNP [dm3] 2R_8832658_SNP [dm6]	C	A	3.545e^-11	1.038e^-7	INTRON sns	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4721247	2R_4721247_SNP [dm3] 2R_8833742_SNP [dm6]	C	A	3.545e^-11	1.038e^-7	INTRON sns	TF binding site mE1_TFBS_cad
2R	4725235	2R_4725235_SNP [dm3] 2R_8837730_SNP [dm6]	C	T	3.545e^-11	1.038e^-7	INTRON sns	TF binding site mE1_TFBS_chinmo
2R	9355591	2R_9355591_SNP [dm3] 2R_13468086_SNP [dm6]	A	C	3.545e^-11	1.038e^-7	INTRON arr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
3L	15682817	3L_15682817_SNP [dm3] 3L_15689717_SNP [dm6]	T	A	3.545e^-11	1.038e^-7	START_GAINED CG34451 UTR_5_PRIME CG34451 INTRON CG34451
3L	15682818	3L_15682818_SNP [dm3] 3L_15689718_SNP [dm6]	G	T	3.545e^-11	1.038e^-7	UTR_5_PRIME CG34451 INTRON CG34451
3L	16555498	3L_16555498_SNP [dm3] 3L_16562398_SNP [dm6]	G	A	3.545e^-11	1.038e^-7	INTERGENIC	TF binding site mE1_TFBS_cad
3L	18093246	3L_18093246_SNP [dm3] 3L_18100146_SNP [dm6]	C	T	3.545e^-11	1.038e^-7	INTRON CG13698
3L	20051150	3L_20051150_SNP [dm3] 3L_20058050_SNP [dm6]	A	G	3.545e^-11	1.038e^-7	DOWNSTREAM sNPF-R INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2205149	3L_2205149_SNP [dm3] 3L_2205149_SNP [dm6]	T	A	3.545e^-11	1.038e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	2206130	3L_2206130_SNP [dm3] 3L_2206130_SNP [dm6]	T	C	3.545e^-11	1.038e^-7	INTERGENIC
3L	2206700	3L_2206700_SNP [dm3] 3L_2206700_SNP [dm6]	C	T	3.545e^-11	1.038e^-7	INTERGENIC
3L	2207162	3L_2207162_SNP [dm3] 3L_2207162_SNP [dm6]	G	A	3.545e^-11	1.038e^-7	INTERGENIC
3L	2207299	3L_2207299_SNP [dm3] 3L_2207299_SNP [dm6]	A	C	3.545e^-11	1.038e^-7	INTERGENIC
3L	2207304	3L_2207304_SNP [dm3] 3L_2207304_SNP [dm6]	T	C	3.545e^-11	1.038e^-7	INTERGENIC
3L	2207713	3L_2207713_SNP [dm3] 3L_2207713_SNP [dm6]	G	A	3.545e^-11	1.038e^-7	INTERGENIC
3L	2207714	3L_2207714_SNP [dm3] 3L_2207714_SNP [dm6]	A	G	3.545e^-11	1.038e^-7	INTERGENIC
3L	3022122	3L_3022122_DEL [dm3] 3L_3022122_DEL [dm6]	GG	G	3.545e^-11	1.038e^-7	INTERGENIC
3L	3022146	3L_3022146_SNP [dm3] 3L_3022146_SNP [dm6]	G	A	3.545e^-11	1.038e^-7	INTERGENIC
3L	3022152	3L_3022152_SNP [dm3] 3L_3022152_SNP [dm6]	A	T	3.545e^-11	1.038e^-7	INTERGENIC
3L	4185641	3L_4185641_SNP [dm3] 3L_4185641_SNP [dm6]	G	A	3.545e^-11	1.038e^-7	UPSTREAM Teh3 DOWNSTREAM VhaM9.7-c INTRON CG18675 & 1 other
3L	5384649	3L_5384649_SNP [dm3] 3L_5391549_SNP [dm6]	C	T	3.545e^-11	1.038e^-7	INTERGENIC
3L	5616818	3L_5616818_SNP [dm3] 3L_5623718_SNP [dm6]	G	T	3.545e^-11	1.038e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6547444	3L_6547444_SNP [dm3] 3L_6554344_SNP [dm6]	A	C	3.545e^-11	1.038e^-7	INTRON CG18769
3L	8723059	3L_8723059_SNP [dm3] 3L_8729959_SNP [dm6]	C	T	3.545e^-11	1.038e^-7	DOWNSTREAM Cp15 INTRON Cp19
3L	9824661	3L_9824661_SNP [dm3] 3L_9831561_SNP [dm6]	A	C	3.545e^-11	1.038e^-7	INTRON CG43897	TF binding site mE1_TFBS_cad
3R	14895683	3R_14895683_SNP [dm3] 3R_19069961_SNP [dm6]	T	A	3.545e^-11	1.038e^-7	INTRON cdi
3R	14895689	3R_14895689_SNP [dm3] 3R_19069967_SNP [dm6]	C	A	3.545e^-11	1.038e^-7	INTRON cdi
3R	20156538	3R_20156538_SNP [dm3] 3R_24330816_SNP [dm6]	C	A	3.545e^-11	1.038e^-7	NON_SYNONYMOUS_CODING CG5728	TF binding site mE1_TFBS_cad
3R	9466985	3R_9466985_SNP [dm3] 3R_13641263_SNP [dm6]	C	T	3.545e^-11	1.038e^-7	UTR_3_PRIME sqd INTRON sqd
X	11739681	X_11739681_SNP [dm3] X_11845648_SNP [dm6]	C	G	3.545e^-11	1.038e^-7	SYNONYMOUS_CODING CG15740	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	13520755	X_13520755_SNP [dm3] X_13626722_SNP [dm6]	T	G	3.545e^-11	1.038e^-7	INTRON NFAT	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13520812	X_13520812_SNP [dm3] X_13626779_SNP [dm6]	T	A	3.545e^-11	1.038e^-7	INTRON NFAT	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13520815	X_13520815_SNP [dm3] X_13626782_SNP [dm6]	C	T	3.545e^-11	1.038e^-7	INTRON NFAT	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15116831	X_15116831_SNP [dm3] X_15222798_SNP [dm6]	C	A	3.545e^-11	1.038e^-7	UTR_3_PRIME CG43076
X	17560697	X_17560697_SNP [dm3] X_17666664_SNP [dm6]	C	T	3.545e^-11	1.038e^-7	SYNONYMOUS_CODING beta-Spec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20957149	X_20957149_SNP [dm3] X_21086122_SNP [dm6]	T	C	3.545e^-11	1.038e^-7	INTERGENIC
X	8896438	X_8896438_SNP [dm3] X_9002405_SNP [dm6]	A	G	3.545e^-11	1.038e^-7	INTRON rdgA & 1 other
3R	5088390	3R_5088390_SNP [dm3] 3R_9262668_SNP [dm6]	A	T	3.546e^-11	1.038e^-7	UTR_3_PRIME sage DOWNSTREAM VhaM8.9	TF binding site mE1_TFBS_inv
3R	14923682	3R_14923682_SNP [dm3] 3R_19097960_SNP [dm6]	C	T	3.594e^-11	1.049e^-7	INTRON CG6040
3R	14923684	3R_14923684_DEL [dm3] 3R_19097962_DEL [dm6]	AAA	A	3.594e^-11	1.049e^-7	INTRON CG6040
2R	8043676	2R_8043676_SNP [dm3] 2R_12156171_SNP [dm6]	G	C	3.662e^-11	1.067e^-7	SYNONYMOUS_CODING Prp8	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	3280663	X_3280663_SNP [dm3] X_3386630_SNP [dm6]	A	T	3.698e^-11	1.076e^-7	UTR_3_PRIME dm DOWNSTREAM dm INTRON CR44999
2R	11167674	2R_11167674_SNP [dm3] 2R_15280169_SNP [dm6]	G	A	3.741e^-11	1.086e^-7	INTRON Trpm
2L	5592368	2L_5592368_SNP [dm3] 2L_5592368_SNP [dm6]	A	G	3.756e^-11	1.089e^-7	INTERGENIC
2R	16224645	2R_16224645_SNP [dm3] 2R_20337140_SNP [dm6]	A	G	3.770e^-11	1.091e^-7	INTERGENIC
2R	18101474	2R_18101474_SNP [dm3] 2R_22213969_SNP [dm6]	G	A	3.809e^-11	1.101e^-7	INTRON ari-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	13318341	3R_13318341_SNP [dm3] 3R_17492619_SNP [dm6]	T	G	3.834e^-11	1.106e^-7	INTRON Dscam3	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	9759185	2R_9759185_SNP [dm3] 2R_13871680_SNP [dm6]	G	A	3.892e^-11	1.121e^-7	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
2L	12596983	2L_12596983_SNP [dm3] 2L_12596983_SNP [dm6]	C	G	3.916e^-11	1.126e^-7	INTRON nub
2L	20724447	2L_20724447_SNP [dm3] 2L_20724447_SNP [dm6]	G	T	3.987e^-11	1.145e^-7	UTR_3_PRIME CG9316
2R	7993423	2R_7993423_SNP [dm3] 2R_12105918_SNP [dm6]	A	G	4.028e^-11	1.155e^-7	INTRON jeb	TF binding site mE1_TFBS_HSA
2L	342280	2L_342280_SNP [dm3] 2L_342280_SNP [dm6]	G	T	4.071e^-11	1.165e^-7	INTRON Plc21C
3L	16908991	3L_16908991_SNP [dm3] 3L_16915891_SNP [dm6]	G	T	4.140e^-11	1.183e^-7	UPSTREAM Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	12791883	3R_12791883_SNP [dm3] 3R_16966161_SNP [dm6]	C	A	4.198e^-11	1.198e^-7	INTRON Abd-B	TF binding site mE1_TFBS_cad
3R	17068232	3R_17068232_SNP [dm3] 3R_21242510_SNP [dm6]	A	G	4.252e^-11	1.211e^-7	UPSTREAM CG5892 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
2L	9823716	2L_9823716_SNP [dm3] 2L_9823716_SNP [dm6]	C	A	4.299e^-11	1.223e^-7	INTRON nAChRalpha6
3L	1829237	3L_1829237_SNP [dm3] 3L_1829237_SNP [dm6]	A	T	4.307e^-11	1.223e^-7	UPSTREAM Cpr62Ba INTRON Cpr62Ba
2L	6592680	2L_6592680_SNP [dm3] 2L_6592680_SNP [dm6]	G	C	4.462e^-11	1.265e^-7	INTRON CG11319
3L	2192611	3L_2192611_SNP [dm3] 3L_2192611_SNP [dm6]	C	A	4.523e^-11	1.278e^-7	UPSTREAM CG5707 INTERGENIC
2L	3780762	2L_3780762_SNP [dm3] 2L_3780762_SNP [dm6]	A	C	4.529e^-11	1.278e^-7	INTRON bowl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3780763	2L_3780763_SNP [dm3] 2L_3780763_SNP [dm6]	C	G	4.529e^-11	1.278e^-7	INTRON bowl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18706819	3R_18706819_SNP [dm3] 3R_22881097_SNP [dm6]	C	T	4.548e^-11	1.278e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	12325892	2R_12325892_SNP [dm3] 2R_16438387_SNP [dm6]	A	G	4.628e^-11	1.278e^-7	INTERGENIC
X	5918479	X_5918479_SNP [dm3] X_6024446_SNP [dm6]	G	A	4.671e^-11	1.278e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	19559939	3R_19559939_SNP [dm3] 3R_23734217_SNP [dm6]	G	A	4.674e^-11	1.278e^-7	UPSTREAM Rpn9 INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2903545	3L_2903545_SNP [dm3] 3L_2903545_SNP [dm6]	T	A	4.698e^-11	1.278e^-7	INTRON Shab
3L	7784579	3L_7784579_SNP [dm3] 3L_7791479_SNP [dm6]	A	T	4.698e^-11	1.278e^-7	INTRON CG32369
2R	14563373	2R_14563373_SNP [dm3] 2R_18675868_SNP [dm6]	A	G	4.716e^-11	1.278e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	24767550	3R_24767550_DEL [dm3] 3R_28941828_DEL [dm6]	TT	T	4.716e^-11	1.278e^-7	INTRON CG14521
2R	7886551	2R_7886551_SNP [dm3] 2R_11999046_SNP [dm6]	C	T	4.717e^-11	1.278e^-7	INTERGENIC
3R	18706848	3R_18706848_SNP [dm3] 3R_22881126_SNP [dm6]	G	A	4.752e^-11	1.278e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	19083324	3L_19083324_SNP [dm3] 3L_19090224_SNP [dm6]	T	C	4.788e^-11	1.278e^-7	UPSTREAM CR45386 INTERGENIC
3L	19083325	3L_19083325_SNP [dm3] 3L_19090225_SNP [dm6]	G	T	4.788e^-11	1.278e^-7	UPSTREAM CR45386 INTERGENIC
3R	21652679	3R_21652679_INS [dm3] 3R_25826957_INS [dm6]	TG	AATCA	4.788e^-11	1.278e^-7	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	20211548	X_20211548_SNP [dm3] X_20340521_SNP [dm6]	T	G	4.826e^-11	1.278e^-7	INTERGENIC
3R	21478504	3R_21478504_SNP [dm3] 3R_25652782_SNP [dm6]	C	T	4.832e^-11	1.278e^-7	DOWNSTREAM Tnks INTERGENIC
3R	22136279	3R_22136279_SNP [dm3] 3R_26310557_SNP [dm6]	G	C	4.832e^-11	1.278e^-7	INTERGENIC
X	12013016	X_12013016_SNP [dm3] X_12118983_SNP [dm6]	C	T	4.832e^-11	1.278e^-7	INTRON Ten-a
3R	10190442	3R_10190442_SNP [dm3] 3R_14364720_SNP [dm6]	T	G	4.836e^-11	1.278e^-7	INTRON NK7.1
X	10856326	X_10856326_SNP [dm3] X_10962293_SNP [dm6]	C	T	4.851e^-11	1.278e^-7	SYNONYMOUS_CODING Myo10A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	2553868	X_2553868_SNP [dm3] X_2659835_SNP [dm6]	C	T	4.851e^-11	1.278e^-7	SYNONYMOUS_CODING sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7008803	3L_7008803_SNP [dm3] 3L_7015703_SNP [dm6]	T	C	4.858e^-11	1.278e^-7	INTRON Mp
2L	3677271	2L_3677271_SNP [dm3] 2L_3677271_SNP [dm6]	C	T	4.871e^-11	1.278e^-7	INTRON CG34340
2L	9516604	2L_9516604_SNP [dm3] 2L_9516604_SNP [dm6]	G	A	4.871e^-11	1.278e^-7	NON_SYNONYMOUS_CODING CG33298
2L	9520267	2L_9520267_SNP [dm3] 2L_9520267_SNP [dm6]	C	T	4.871e^-11	1.278e^-7	UTR_3_PRIME CG33298 UPSTREAM Oatp30B	TF binding site mE1_TFBS_bab1
2L	9521523	2L_9521523_SNP [dm3] 2L_9521523_SNP [dm6]	A	T	4.871e^-11	1.278e^-7	DOWNSTREAM CG33298 INTRON Oatp30B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9523086	2L_9523086_SNP [dm3] 2L_9523086_SNP [dm6]	G	A	4.871e^-11	1.278e^-7	INTRON Oatp30B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	9523256	2L_9523256_SNP [dm3] 2L_9523256_SNP [dm6]	G	A	4.871e^-11	1.278e^-7	UTR_5_PRIME Oatp30B INTRON Oatp30B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	16567514	2R_16567514_SNP [dm3] 2R_20680009_SNP [dm6]	C	G	4.876e^-11	1.278e^-7	INTERGENIC
2L	2652072	2L_2652072_SNP [dm3] 2L_2652072_SNP [dm6]	C	T	4.932e^-11	1.278e^-7	UPSTREAM Prosbeta4R1 INTRON CG33125
3L	18944672	3L_18944672_SNP [dm3] 3L_18951572_SNP [dm6]	C	A	4.932e^-11	1.278e^-7	INTRON CG6836
3R	25156476	3R_25156476_SNP [dm3] 3R_29330754_SNP [dm6]	A	T	4.932e^-11	1.278e^-7	INTERGENIC
3R	5662272	3R_5662272_SNP [dm3] 3R_9836550_SNP [dm6]	A	C	4.932e^-11	1.278e^-7	INTRON Teh1
X	6195441	X_6195441_DEL [dm3] X_6301408_DEL [dm6]	TT	G	4.932e^-11	1.278e^-7	UPSTREAM CG12219 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	9751606	X_9751606_SNP [dm3] X_9857573_SNP [dm6]	C	T	4.932e^-11	1.278e^-7	INTERGENIC
X	11894187	X_11894187_SNP [dm3] X_12000154_SNP [dm6]	T	C	4.939e^-11	1.278e^-7	INTRON fw
3L	846529	3L_846529_SNP [dm3] 3L_846529_SNP [dm6]	G	C	4.945e^-11	1.278e^-7	NON_SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14552964	2R_14552964_SNP [dm3] 2R_18665459_SNP [dm6]	C	T	4.956e^-11	1.278e^-7	SYNONYMOUS_CODING CG33136	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
X	12122184	X_12122184_SNP [dm3] X_12228151_SNP [dm6]	A	G	4.980e^-11	1.278e^-7	INTRON Ten-a
2L	10867932	2L_10867932_SNP [dm3] 2L_10867932_SNP [dm6]	A	G	5.001e^-11	1.278e^-7	INTERGENIC
2L	4461114	2L_4461114_SNP [dm3] 2L_4461114_SNP [dm6]	C	A	5.001e^-11	1.278e^-7	NON_SYNONYMOUS_CODING CG15435 DOWNSTREAM CG15443	TF binding site mE1_TFBS_sens
2L	9670479	2L_9670479_SNP [dm3] 2L_9670479_SNP [dm6]	T	C	5.001e^-11	1.278e^-7	EXON CR44150
2L	10490030	2L_10490030_SNP [dm3] 2L_10490030_SNP [dm6]	G	T	5.009e^-11	1.278e^-7	UTR_3_PRIME CG6144 & 1 other	TF binding site mE1_TFBS_cad
2L	1373457	2L_1373457_SNP [dm3] 2L_1373457_SNP [dm6]	A	T	5.009e^-11	1.278e^-7	INTERGENIC
2L	3461450	2L_3461450_SNP [dm3] 2L_3461450_SNP [dm6]	C	T	5.009e^-11	1.278e^-7	SYNONYMOUS_CODING CG3246 DOWNSTREAM msl-2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	5702636	2L_5702636_SNP [dm3] 2L_5702636_SNP [dm6]	T	C	5.009e^-11	1.278e^-7	INTERGENIC
3R	3619453	3R_3619453_SNP [dm3] 3R_7793731_SNP [dm6]	C	T	5.009e^-11	1.278e^-7	UPSTREAM CG2641 DOWNSTREAM CG10086 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11324169	2L_11324169_SNP [dm3] 2L_11324169_SNP [dm6]	G	A	5.010e^-11	1.278e^-7	INTERGENIC
2L	6139383	2L_6139383_DEL [dm3] 2L_6139383_DEL [dm6]	AT	A	5.010e^-11	1.278e^-7	UTR_5_PRIME CG13991 UPSTREAM CR44824
2L	8296975	2L_8296975_INS [dm3] 2L_8296975_INS [dm6]	A	AG	5.010e^-11	1.278e^-7	UTR_5_PRIME Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20706269	2R_20706269_SNP [dm3] 2R_24818746_SNP [dm6]	T	C	5.010e^-11	1.278e^-7	INTRON Dll
3L	18093280	3L_18093280_SNP [dm3] 3L_18100180_SNP [dm6]	G	T	5.010e^-11	1.278e^-7	INTRON CG13698
2L	10491137	2L_10491137_SNP [dm3] 2L_10491137_SNP [dm6]	A	G	5.041e^-11	1.278e^-7	SYNONYMOUS_CODING CG13144 DOWNSTREAM CG6144 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10565351	2R_10565351_SNP [dm3] 2R_14677846_SNP [dm6]	A	G	5.041e^-11	1.278e^-7	SYNONYMOUS_CODING CG30480 UTR_5_PRIME CG30479 INTRON mspo
2R	11603559	2R_11603559_SNP [dm3] 2R_15716054_SNP [dm6]	G	A	5.041e^-11	1.278e^-7	INTERGENIC
2R	17419003	2R_17419003_SNP [dm3] 2R_21531498_SNP [dm6]	C	A	5.041e^-11	1.278e^-7	DOWNSTREAM CR44725 INTRON Egfr	TF binding site mE1_TFBS_chinmo
2R	4719508	2R_4719508_SNP [dm3] 2R_8832003_SNP [dm6]	T	C	5.041e^-11	1.278e^-7	INTRON sns	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	12080168	3L_12080168_SNP [dm3] 3L_12087068_SNP [dm6]	A	T	5.041e^-11	1.278e^-7	INTERGENIC
3L	2207308	3L_2207308_INS [dm3] 3L_2207308_INS [dm6]	C	TA	5.041e^-11	1.278e^-7	INTERGENIC
3L	2209117	3L_2209117_SNP [dm3] 3L_2209117_SNP [dm6]	G	C	5.041e^-11	1.278e^-7	INTERGENIC
3R	17947053	3R_17947053_SNP [dm3] 3R_22121331_SNP [dm6]	A	T	5.048e^-11	1.278e^-7	INTRON CG42390
3L	3530910	3L_3530910_SNP [dm3] 3L_3530910_SNP [dm6]	G	T	5.049e^-11	1.278e^-7	INTRON Eip63E
3R	10914142	3R_10914142_SNP [dm3] 3R_15088420_SNP [dm6]	C	T	5.074e^-11	1.278e^-7	INTRON CG6966
3R	22061023	3R_22061023_SNP [dm3] 3R_26235301_SNP [dm6]	T	A	5.074e^-11	1.278e^-7	UPSTREAM CR42745 DOWNSTREAM CG12290 INTERGENIC
2R	4715318	2R_4715318_DEL [dm3] 2R_8827813_DEL [dm6]	TTTTGAAATATGATTTCAAA...	T	5.100e^-11	1.278e^-7	DOWNSTREAM CG30350 INTRON sns	TF binding site mE1_TFBS_chinmo
3L	3022138	3L_3022138_SNP [dm3] 3L_3022138_SNP [dm6]	C	T	5.100e^-11	1.278e^-7	INTERGENIC
2L	11958978	2L_11958978_INS [dm3] 2L_11958978_INS [dm6]	T	TC	5.160e^-11	1.278e^-7	INTRON CR43314 EXON CR43314
2L	11193820	2L_11193820_DEL [dm3] 2L_11193820_DEL [dm6]	TGGATATT	T	5.197e^-11	1.278e^-7	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	4792615	2L_4792615_SNP [dm3] 2L_4792615_SNP [dm6]	A	T	5.197e^-11	1.278e^-7	INTRON CG15630
2R	10621560	2R_10621560_SNP [dm3] 2R_14734055_SNP [dm6]	A	G	5.197e^-11	1.278e^-7	INTERGENIC
2R	12105632	2R_12105632_SNP [dm3] 2R_16218127_SNP [dm6]	T	G	5.197e^-11	1.278e^-7	INTRON mrj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12105650	2R_12105650_SNP [dm3] 2R_16218145_SNP [dm6]	A	T	5.197e^-11	1.278e^-7	INTRON mrj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12132831	2R_12132831_SNP [dm3] 2R_16245326_SNP [dm6]	C	G	5.197e^-11	1.278e^-7	INTRON CngA	TF binding site mE1_TFBS_cad
2R	13720312	2R_13720312_SNP [dm3] 2R_17832807_SNP [dm6]	T	A	5.197e^-11	1.278e^-7	INTRON grh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15313115	2R_15313115_SNP [dm3] 2R_19425610_SNP [dm6]	T	A	5.197e^-11	1.278e^-7	UPSTREAM hts INTRON CalpA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_zfh1
2R	15983208	2R_15983208_SNP [dm3] 2R_20095703_SNP [dm6]	C	T	5.197e^-11	1.278e^-7	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16740902	2R_16740902_SNP [dm3] 2R_20853397_SNP [dm6]	C	A	5.197e^-11	1.278e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	20584556	2R_20584556_SNP [dm3] 2R_24697033_SNP [dm6]	T	C	5.197e^-11	1.278e^-7	UTR_3_PRIME Mid1
2R	4580963	2R_4580963_SNP [dm3] 2R_8693458_SNP [dm6]	T	C	5.197e^-11	1.278e^-7	UTR_3_PRIME CG8586 DOWNSTREAM CG8586 & 1 other
3L	12723242	3L_12723242_SNP [dm3] 3L_12730142_SNP [dm6]	G	A	5.197e^-11	1.278e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3119757	3L_3119757_SNP [dm3] 3L_3119757_SNP [dm6]	A	G	5.197e^-11	1.278e^-7	INTRON prominin-like
3L	3119805	3L_3119805_SNP [dm3] 3L_3119805_SNP [dm6]	T	G	5.197e^-11	1.278e^-7	SYNONYMOUS_CODING prominin-like
3L	3119893	3L_3119893_SNP [dm3] 3L_3119893_SNP [dm6]	T	C	5.197e^-11	1.278e^-7	SYNONYMOUS_CODING prominin-like
3L	3658240	3L_3658240_INS [dm3] 3L_3658240_INS [dm6]	A	AA	5.197e^-11	1.278e^-7	UPSTREAM CG43098 INTERGENIC
3L	8881996	3L_8881996_SNP [dm3] 3L_8888896_SNP [dm6]	T	A	5.197e^-11	1.278e^-7	UPSTREAM CG43169 INTRON dally
3L	8881997	3L_8881997_SNP [dm3] 3L_8888897_SNP [dm6]	T	C	5.197e^-11	1.278e^-7	UPSTREAM CG43169 INTRON dally
3L	8882291	3L_8882291_SNP [dm3] 3L_8889191_SNP [dm6]	A	C	5.197e^-11	1.278e^-7	NON_SYNONYMOUS_CODING dally UPSTREAM CG43169
3L	8884240	3L_8884240_SNP [dm3] 3L_8891140_SNP [dm6]	G	A	5.197e^-11	1.278e^-7	UTR_3_PRIME dally UPSTREAM Mcm7 DOWNSTREAM dally	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1
3L	8884473	3L_8884473_SNP [dm3] 3L_8891373_SNP [dm6]	C	T	5.197e^-11	1.278e^-7	UPSTREAM Mcm7 DOWNSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3L	8884648	3L_8884648_SNP [dm3] 3L_8891548_SNP [dm6]	A	T	5.197e^-11	1.278e^-7	UPSTREAM Mcm7 DOWNSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8884651	3L_8884651_SNP [dm3] 3L_8891551_SNP [dm6]	T	C	5.197e^-11	1.278e^-7	UPSTREAM Mcm7 DOWNSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8884670	3L_8884670_SNP [dm3] 3L_8891570_SNP [dm6]	C	T	5.197e^-11	1.278e^-7	UPSTREAM Mcm7 DOWNSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8885372	3L_8885372_SNP [dm3] 3L_8892272_SNP [dm6]	G	T	5.197e^-11	1.278e^-7	INTRON Mcm7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8885385	3L_8885385_SNP [dm3] 3L_8892285_SNP [dm6]	C	T	5.197e^-11	1.278e^-7	SPLICE_SITE_REGION Mcm7 SYNONYMOUS_CODING Mcm7	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	12573803	3R_12573803_SNP [dm3] 3R_16748081_SNP [dm6]	A	T	5.197e^-11	1.278e^-7	INTRON bxd	regulatory region REDfly_CRMs TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	6115729	3R_6115729_SNP [dm3] 3R_10290007_SNP [dm6]	G	A	5.197e^-11	1.278e^-7	UPSTREAM CG43143 INTRON CG43143
3R	14923654	3R_14923654_SNP [dm3] 3R_19097932_SNP [dm6]	C	T	5.263e^-11	1.292e^-7	INTRON CG6040
3R	12031846	3R_12031846_SNP [dm3] 3R_16206124_SNP [dm6]	G	A	5.374e^-11	1.318e^-7	UPSTREAM mtSSB INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	14923600	3R_14923600_DEL [dm3] 3R_19097878_DEL [dm6]	CACAA	T	5.460e^-11	1.330e^-7	INTRON CG6040
3R	14923610	3R_14923610_SNP [dm3] 3R_19097888_SNP [dm6]	A	G	5.460e^-11	1.330e^-7	INTRON CG6040
3R	14923625	3R_14923625_SNP [dm3] 3R_19097903_SNP [dm6]	A	T	5.460e^-11	1.330e^-7	INTRON CG6040
3R	14923630	3R_14923630_SNP [dm3] 3R_19097908_SNP [dm6]	C	T	5.460e^-11	1.330e^-7	INTRON CG6040
3R	14923637	3R_14923637_SNP [dm3] 3R_19097915_SNP [dm6]	T	C	5.460e^-11	1.330e^-7	INTRON CG6040
3L	19119103	3L_19119103_SNP [dm3] 3L_19126003_SNP [dm6]	T	G	5.527e^-11	1.344e^-7	INTRON CG14082
3R	20959851	3R_20959851_SNP [dm3] 3R_25134129_SNP [dm6]	G	A	5.617e^-11	1.364e^-7	SYNONYMOUS_CODING Bili
2R	4584918	2R_4584918_SNP [dm3] 2R_8697413_SNP [dm6]	T	A	5.698e^-11	1.379e^-7	INTRON CG8738	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18423862	2R_18423862_SNP [dm3] 2R_22536357_SNP [dm6]	A	G	5.714e^-11	1.379e^-7	INTRON px
2R	18423863	2R_18423863_SNP [dm3] 2R_22536358_SNP [dm6]	A	G	5.714e^-11	1.379e^-7	INTRON px
2R	18423867	2R_18423867_SNP [dm3] 2R_22536362_SNP [dm6]	G	A	5.714e^-11	1.379e^-7	INTRON px
2R	18423869	2R_18423869_SNP [dm3] 2R_22536364_SNP [dm6]	G	A	5.714e^-11	1.379e^-7	INTRON px
2L	14395467	2L_14395467_SNP [dm3] 2L_14395467_SNP [dm6]	C	G	5.889e^-11	1.419e^-7	INTRON elB
3L	2192496	3L_2192496_SNP [dm3] 3L_2192496_SNP [dm6]	A	C	6.104e^-11	1.469e^-7	UPSTREAM CG5707 INTERGENIC
3L	7797500	3L_7797500_SNP [dm3] 3L_7804400_SNP [dm6]	G	A	6.141e^-11	1.476e^-7	SYNONYMOUS_CODING CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
3L	23953422	3L_23953422_DEL [dm3] 3L_23960322_DEL [dm6]	AAT	A	6.177e^-11	1.482e^-7	INTRON CG40470
3L	2192677	3L_2192677_INS [dm3] 3L_2192677_INS [dm6]	C	CT	6.493e^-11	1.556e^-7	UPSTREAM CG5707 INTERGENIC
3R	26472873	3R_26472873_SNP [dm3] 3R_30647151_SNP [dm6]	G	A	6.643e^-11	1.590e^-7	SYNONYMOUS_CODING PH4alphaPV	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8907642	2R_8907642_SNP [dm3] 2R_13020137_SNP [dm6]	G	A	6.680e^-11	1.597e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	22175199	3R_22175199_SNP [dm3] 3R_26349477_SNP [dm6]	G	A	6.747e^-11	1.611e^-7	INTRON CG33970
3L	2201483	3L_2201483_SNP [dm3] 3L_2201483_SNP [dm6]	T	C	6.807e^-11	1.623e^-7	INTERGENIC
3R	3141889	3R_3141889_SNP [dm3] 3R_7316167_SNP [dm6]	G	C	6.852e^-11	1.624e^-7	NON_SYNONYMOUS_CODING CG10029
2L	1095061	2L_1095061_SNP [dm3] 2L_1095061_SNP [dm6]	G	A	6.857e^-11	1.624e^-7	INTRON CG4629
2L	1095105	2L_1095105_SNP [dm3] 2L_1095105_SNP [dm6]	G	A	6.857e^-11	1.624e^-7	INTRON CG4629
2L	1095174	2L_1095174_SNP [dm3] 2L_1095174_SNP [dm6]	G	A	6.857e^-11	1.624e^-7	INTRON CG4629
2R	6664800	2R_6664800_SNP [dm3] 2R_10777295_SNP [dm6]	C	A	6.863e^-11	1.624e^-7	INTRON CG33144
2R	13744456	2R_13744456_SNP [dm3] 2R_17856951_SNP [dm6]	G	A	6.866e^-11	1.624e^-7	SYNONYMOUS_CODING olf186-F INTRON olf186-F	TF binding site mE1_TFBS_chinmo
X	19994945	X_19994945_SNP [dm3] X_20100912_SNP [dm6]	G	A	6.904e^-11	1.631e^-7	INTERGENIC	transposable element FlyBase
3R	10155789	3R_10155789_SNP [dm3] 3R_14330067_SNP [dm6]	C	G	6.919e^-11	1.632e^-7	UTR_3_PRIME NK7.1 DOWNSTREAM NK7.1 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	2192681	3L_2192681_SNP [dm3] 3L_2192681_SNP [dm6]	T	A	6.935e^-11	1.633e^-7	UPSTREAM CG5707 INTERGENIC
2L	8941608	2L_8941608_SNP [dm3] 2L_8941608_SNP [dm6]	C	A	6.941e^-11	1.633e^-7	SYNONYMOUS_CODING CG9510 DOWNSTREAM CG9515	TF binding site mE1_TFBS_cad
2R	17665146	2R_17665146_SNP [dm3] 2R_21777641_SNP [dm6]	C	A	6.969e^-11	1.633e^-7	INTERGENIC
3L	1176157	3L_1176157_SNP [dm3] 3L_1176157_SNP [dm6]	C	A	6.969e^-11	1.633e^-7	INTRON bab2
3L	7003655	3L_7003655_SNP [dm3] 3L_7010555_SNP [dm6]	G	A	6.971e^-11	1.633e^-7	INTRON Mp
3R	14618991	3R_14618991_SNP [dm3] 3R_18793269_SNP [dm6]	C	T	6.977e^-11	1.633e^-7	UPSTREAM CG7720 INTRON CG7720
3L	5271283	3L_5271283_SNP [dm3] 3L_5278183_SNP [dm6]	T	A	7.004e^-11	1.635e^-7	UPSTREAM shep INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_Trl
2L	10979332	2L_10979332_SNP [dm3] 2L_10979332_SNP [dm6]	G	A	7.017e^-11	1.635e^-7	INTRON SCAR
2R	6621377	2R_6621377_SNP [dm3] 2R_10733872_SNP [dm6]	G	T	7.017e^-11	1.635e^-7	INTRON CG7220
2L	5393982	2L_5393982_SNP [dm3] 2L_5393982_SNP [dm6]	G	T	7.059e^-11	1.635e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	2207660	3L_2207660_SNP [dm3] 3L_2207660_SNP [dm6]	C	G	7.075e^-11	1.635e^-7	INTERGENIC
2R	10207967	2R_10207967_SNP [dm3] 2R_14320462_SNP [dm6]	C	T	7.093e^-11	1.635e^-7	INTRON Shroom
3L	5782767	3L_5782767_SNP [dm3] 3L_5789667_SNP [dm6]	A	G	7.096e^-11	1.635e^-7	DOWNSTREAM Bre1 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	3453185	2L_3453185_SNP [dm3] 2L_3453185_SNP [dm6]	G	A	7.121e^-11	1.635e^-7	SYNONYMOUS_CODING CG12795 DOWNSTREAM Cog3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3280507	X_3280507_SNP [dm3] X_3386474_SNP [dm6]	T	C	7.121e^-11	1.635e^-7	UTR_3_PRIME dm DOWNSTREAM dm INTRON CR44999
X	3223062	X_3223062_MNP [dm3] X_3329029_MNP [dm6]	CTT	TCA	7.128e^-11	1.635e^-7	UPSTREAM dnc INTRON CR44886 & 1 other
X	3223066	X_3223066_SNP [dm3] X_3329033_SNP [dm6]	G	A	7.128e^-11	1.635e^-7	UPSTREAM dnc INTRON CR44886 & 1 other
X	3223096	X_3223096_SNP [dm3] X_3329063_SNP [dm6]	A	T	7.128e^-11	1.635e^-7	UPSTREAM dnc INTRON CR44886 & 1 other
X	3223098	X_3223098_SNP [dm3] X_3329065_SNP [dm6]	G	A	7.128e^-11	1.635e^-7	UPSTREAM dnc INTRON CR44886 & 1 other
3R	12180776	3R_12180776_SNP [dm3] 3R_16355054_SNP [dm6]	G	A	7.137e^-11	1.635e^-7	INTRON CG10311	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	9378143	2R_9378143_SNP [dm3] 2R_13490638_SNP [dm6]	G	T	7.142e^-11	1.635e^-7	INTRON bbc
2L	16666456	2L_16666456_SNP [dm3] 2L_16666456_SNP [dm6]	C	T	7.168e^-11	1.635e^-7	SYNONYMOUS_CODING Trpgamma
2R	17307912	2R_17307912_SNP [dm3] 2R_21420407_SNP [dm6]	A	G	7.169e^-11	1.635e^-7	INTRON Sdc
3R	12673660	3R_12673660_SNP [dm3] 3R_16847938_SNP [dm6]	A	G	7.173e^-11	1.635e^-7	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3R	12674774	3R_12674774_SNP [dm3] 3R_16849052_SNP [dm6]	T	A	7.173e^-11	1.635e^-7	UPSTREAM iab-8 & 1 other INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12674810	3R_12674810_SNP [dm3] 3R_16849088_SNP [dm6]	A	G	7.173e^-11	1.635e^-7	UPSTREAM iab-8 & 1 other INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12675040	3R_12675040_SNP [dm3] 3R_16849318_SNP [dm6]	G	A	7.173e^-11	1.635e^-7	UPSTREAM iab-8 & 1 other INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4532404	3L_4532404_SNP [dm3] 3L_4532404_SNP [dm6]	A	G	7.181e^-11	1.635e^-7	UPSTREAM Tie & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17365688	3R_17365688_SNP [dm3] 3R_21539966_SNP [dm6]	T	G	7.225e^-11	1.635e^-7	INTERGENIC
2L	318414	2L_318414_SNP [dm3] 2L_318414_SNP [dm6]	T	A	7.235e^-11	1.635e^-7	UTR_3_PRIME CG11912 INTRON Plc21C	TF binding site mE1_TFBS_cad
3L	11387205	3L_11387205_SNP [dm3] 3L_11394105_SNP [dm6]	G	A	7.235e^-11	1.635e^-7	UPSTREAM CG11726 INTERGENIC
3L	17333429	3L_17333429_SNP [dm3] 3L_17340329_SNP [dm6]	G	A	7.235e^-11	1.635e^-7	NON_SYNONYMOUS_CODING CG13727 UPSTREAM tRNA:CR32173	TF binding site mE1_TFBS_cad
3R	14895682	3R_14895682_SNP [dm3] 3R_19069960_SNP [dm6]	C	T	7.235e^-11	1.635e^-7	INTRON cdi
X	6200810	X_6200810_SNP [dm3] X_6306777_SNP [dm6]	G	T	7.235e^-11	1.635e^-7	DOWNSTREAM CG3823 INTERGENIC
2L	10490013	2L_10490013_SNP [dm3] 2L_10490013_SNP [dm6]	C	A	7.342e^-11	1.650e^-7	UTR_3_PRIME CG6144 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6139386	2L_6139386_MNP [dm3] 2L_6139386_MNP [dm6]	AAT	TTA	7.345e^-11	1.650e^-7	UTR_5_PRIME CG13991 UPSTREAM CR44824
3L	7004255	3L_7004255_SNP [dm3] 3L_7011155_SNP [dm6]	G	A	7.345e^-11	1.650e^-7	INTRON Mp
3R	26892401	3R_26892401_SNP [dm3] 3R_31066679_SNP [dm6]	T	A	7.345e^-11	1.650e^-7	INTRON Sox100B	TF binding site mE1_TFBS_HSA
3L	12769801	3L_12769801_SNP [dm3] 3L_12776701_SNP [dm6]	A	G	7.375e^-11	1.650e^-7	NON_SYNONYMOUS_CODING CG32106
2R	4762386	2R_4762386_SNP [dm3] 2R_8874881_SNP [dm6]	C	G	7.389e^-11	1.650e^-7	INTRON RyR	TF binding site mE1_TFBS_cad
3L	8884634	3L_8884634_SNP [dm3] 3L_8891534_SNP [dm6]	A	G	7.389e^-11	1.650e^-7	UPSTREAM Mcm7 DOWNSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	23178496	3R_23178496_SNP [dm3] 3R_27352774_SNP [dm6]	A	G	7.389e^-11	1.650e^-7	INTRON CG42534
2R	20401418	2R_20401418_SNP [dm3] 2R_24513895_SNP [dm6]	A	G	7.402e^-11	1.650e^-7	INTRON Letm1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9281295	2R_9281295_SNP [dm3] 2R_13393790_SNP [dm6]	A	T	7.402e^-11	1.650e^-7	NON_SYNONYMOUS_CODING AttC UPSTREAM CG43691 DOWNSTREAM CG4744
3L	8573465	3L_8573465_SNP [dm3] 3L_8580365_SNP [dm6]	T	A	7.402e^-11	1.650e^-7	INTRON CG43078
X	3223051	X_3223051_SNP [dm3] X_3329018_SNP [dm6]	A	T	7.439e^-11	1.656e^-7	UPSTREAM dnc INTRON CR44886 & 1 other
3L	14245925	3L_14245925_SNP [dm3] 3L_14252825_SNP [dm6]	T	C	7.629e^-11	1.696e^-7	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	5970858	2L_5970858_SNP [dm3] 2L_5970858_SNP [dm6]	A	G	8.020e^-11	1.781e^-7	SYNONYMOUS_CODING Ucp4B UTR_3_PRIME Ucp4B DOWNSTREAM Ucp4B EXON CR43465	TF binding site mE1_TFBS_cad
3R	11264305	3R_11264305_SNP [dm3] 3R_15438583_SNP [dm6]	A	G	8.148e^-11	1.805e^-7	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	5502985	2L_5502985_SNP [dm3] 2L_5502985_SNP [dm6]	G	T	8.149e^-11	1.805e^-7	INTERGENIC
2R	4584917	2R_4584917_SNP [dm3] 2R_8697412_SNP [dm6]	A	T	8.232e^-11	1.821e^-7	INTRON CG8738	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16242301	2R_16242301_SNP [dm3] 2R_20354796_SNP [dm6]	G	A	8.340e^-11	1.843e^-7	SYNONYMOUS_CODING CG11192	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	20168423	2R_20168423_SNP [dm3] 2R_24280900_SNP [dm6]	T	C	9.215e^-11	1.994e^-7	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	6302611	X_6302611_SNP [dm3] X_6408578_SNP [dm6]	A	G	9.359e^-11	1.994e^-7	INTERGENIC
3L	18945028	3L_18945028_SNP [dm3] 3L_18951928_SNP [dm6]	C	T	9.380e^-11	1.994e^-7	INTRON CG6836
3L	4517214	3L_4517214_SNP [dm3] 3L_4517214_SNP [dm6]	T	A	9.501e^-11	1.994e^-7	INTRON Tie
2R	20168850	2R_20168850_SNP [dm3] 2R_24281327_SNP [dm6]	C	T	9.538e^-11	1.994e^-7	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	9186503	X_9186503_SNP [dm3] X_9292470_SNP [dm6]	C	T	9.681e^-11	1.994e^-7	INTRON lz
3R	17723552	3R_17723552_SNP [dm3] 3R_21897830_SNP [dm6]	C	T	9.683e^-11	1.994e^-7	INTRON CG6678
3R	17723558	3R_17723558_SNP [dm3] 3R_21897836_SNP [dm6]	T	C	9.683e^-11	1.994e^-7	INTRON CG6678
2L	9726723	2L_9726723_SNP [dm3] 2L_9726723_SNP [dm6]	T	G	9.694e^-11	1.994e^-7	INTRON Nckx30C
2L	9726724	2L_9726724_SNP [dm3] 2L_9726724_SNP [dm6]	T	C	9.694e^-11	1.994e^-7	INTRON Nckx30C
3R	19647750	3R_19647750_SNP [dm3] 3R_23822028_SNP [dm6]	C	T	9.746e^-11	1.994e^-7	INTRON CG34355
2L	1475078	2L_1475078_SNP [dm3] 2L_1475078_SNP [dm6]	C	T	9.752e^-11	1.994e^-7	INTERGENIC
2R	7891237	2R_7891237_SNP [dm3] 2R_12003732_SNP [dm6]	G	T	9.765e^-11	1.994e^-7	SYNONYMOUS_CODING otk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1373472	2L_1373472_SNP [dm3] 2L_1373472_SNP [dm6]	G	T	9.821e^-11	1.994e^-7	INTERGENIC
2L	3280334	2L_3280334_SNP [dm3] 2L_3280334_SNP [dm6]	G	A	9.840e^-11	1.994e^-7	SYNONYMOUS_CODING CG3332 UPSTREAM CG3332
3R	5708178	3R_5708178_SNP [dm3] 3R_9882456_SNP [dm6]	G	C	9.877e^-11	1.994e^-7	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8884981	3L_8884981_SNP [dm3] 3L_8891881_SNP [dm6]	C	T	9.896e^-11	1.994e^-7	SYNONYMOUS_CODING Mcm7 DOWNSTREAM dally	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	17000322	2R_17000322_SNP [dm3] 2R_21112817_SNP [dm6]	A	G	9.925e^-11	1.994e^-7	INTRON ktub
X	4917369	X_4917369_SNP [dm3] X_5023336_SNP [dm6]	A	G	9.937e^-11	1.994e^-7	INTRON CR44833	regulatory region REDfly_CRMs
3R	14619012	3R_14619012_SNP [dm3] 3R_18793290_SNP [dm6]	A	T	9.962e^-11	1.994e^-7	UPSTREAM CG7720 INTRON CG7720
3R	12673696	3R_12673696_SNP [dm3] 3R_16847974_SNP [dm6]	G	T	9.983e^-11	1.994e^-7	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2L	15317121	2L_15317121_SNP [dm3] 2L_15317121_SNP [dm6]	T	C	9.998e^-11	1.994e^-7	DOWNSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	11200150	2L_11200150_SNP [dm3] 2L_11200150_SNP [dm6]	C	T	1.003e^-10	1.994e^-7	INTRON Ca-beta
2L	11427390	2L_11427390_SNP [dm3] 2L_11427390_SNP [dm6]	T	C	1.003e^-10	1.994e^-7	INTERGENIC
2L	16949563	2L_16949563_SNP [dm3] 2L_16949563_SNP [dm6]	G	A	1.003e^-10	1.994e^-7	INTRON CR44393
2L	16950053	2L_16950053_SNP [dm3] 2L_16950053_SNP [dm6]	A	G	1.003e^-10	1.994e^-7	EXON CR44393
2L	21960279	2L_21960279_SNP [dm3] 2L_21960279_SNP [dm6]	C	A	1.003e^-10	1.994e^-7	UPSTREAM CR44804 INTERGENIC
2L	21964213	2L_21964213_SNP [dm3] 2L_21964213_SNP [dm6]	C	T	1.003e^-10	1.994e^-7	INTERGENIC
2L	21998641	2L_21998641_SNP [dm3] 2L_21998641_SNP [dm6]	C	T	1.003e^-10	1.994e^-7	INTERGENIC
2L	21998644	2L_21998644_DEL [dm3] 2L_21998644_DEL [dm6]	TA	T	1.003e^-10	1.994e^-7	INTERGENIC
2L	3284789	2L_3284789_SNP [dm3] 2L_3284789_SNP [dm6]	T	C	1.003e^-10	1.994e^-7	INTERGENIC
2L	3988668	2L_3988668_SNP [dm3] 2L_3988668_SNP [dm6]	G	C	1.003e^-10	1.994e^-7	INTRON fred
2L	5750531	2L_5750531_SNP [dm3] 2L_5750531_SNP [dm6]	G	A	1.003e^-10	1.994e^-7	INTRON CG11030	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9823560	2L_9823560_SNP [dm3] 2L_9823560_SNP [dm6]	G	C	1.003e^-10	1.994e^-7	INTRON nAChRalpha6
2R	15075962	2R_15075962_SNP [dm3] 2R_19188457_SNP [dm6]	G	A	1.003e^-10	1.994e^-7	INTRON hppy
2R	16599721	2R_16599721_SNP [dm3] 2R_20712216_SNP [dm6]	C	T	1.003e^-10	1.994e^-7	INTRON dpr
2R	16599834	2R_16599834_SNP [dm3] 2R_20712329_SNP [dm6]	C	T	1.003e^-10	1.994e^-7	INTRON dpr
2R	16600804	2R_16600804_SNP [dm3] 2R_20713299_SNP [dm6]	T	A	1.003e^-10	1.994e^-7	INTRON dpr
2R	4587004	2R_4587004_DEL [dm3] 2R_8699499_DEL [dm6]	TC	T	1.003e^-10	1.994e^-7	DOWNSTREAM CG8738 INTERGENIC
2R	8173429	2R_8173429_SNP [dm3] 2R_12285924_SNP [dm6]	T	A	1.003e^-10	1.994e^-7	UPSTREAM CG42700 INTRON CG42700
2R	8173443	2R_8173443_SNP [dm3] 2R_12285938_SNP [dm6]	C	T	1.003e^-10	1.994e^-7	UPSTREAM CG42700 INTRON CG42700
3L	10178292	3L_10178292_SNP [dm3] 3L_10185192_SNP [dm6]	T	A	1.003e^-10	1.994e^-7	INTRON dpr10
3L	10558257	3L_10558257_INS [dm3] 3L_10565157_INS [dm6]	T	TGCCCCATTAAAATG...	1.003e^-10	1.994e^-7	INTRON A2bp1
3L	10558282	3L_10558282_SNP [dm3] 3L_10565182_SNP [dm6]	G	A	1.003e^-10	1.994e^-7	INTRON A2bp1
3L	11053283	3L_11053283_SNP [dm3] 3L_11060183_SNP [dm6]	T	G	1.003e^-10	1.994e^-7	SYNONYMOUS_CODING CG6321 DOWNSTREAM CG7888
3L	11844140	3L_11844140_SNP [dm3] 3L_11851040_SNP [dm6]	C	T	1.003e^-10	1.994e^-7	UTR_3_PRIME CG44837
3L	13708812	3L_13708812_SNP [dm3] 3L_13715712_SNP [dm6]	G	C	1.003e^-10	1.994e^-7	INTRON bru-3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13708815	3L_13708815_SNP [dm3] 3L_13715715_SNP [dm6]	T	A	1.003e^-10	1.994e^-7	INTRON bru-3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13786398	3L_13786398_SNP [dm3] 3L_13793298_SNP [dm6]	T	G	1.003e^-10	1.994e^-7	INTRON bru-3
3L	13786399	3L_13786399_SNP [dm3] 3L_13793299_SNP [dm6]	G	A	1.003e^-10	1.994e^-7	INTRON bru-3
3L	13936938	3L_13936938_SNP [dm3] 3L_13943838_SNP [dm6]	T	A	1.003e^-10	1.994e^-7	INTRON CG32137
3L	13937057	3L_13937057_SNP [dm3] 3L_13943957_SNP [dm6]	A	T	1.003e^-10	1.994e^-7	INTRON CG32137
3L	2815788	3L_2815788_SNP [dm3] 3L_2815788_SNP [dm6]	G	C	1.003e^-10	1.994e^-7	INTRON CG43444
3L	2818754	3L_2818754_SNP [dm3] 3L_2818754_SNP [dm6]	A	T	1.003e^-10	1.994e^-7	INTRON CG43444
3L	3336516	3L_3336516_SNP [dm3] 3L_3336516_SNP [dm6]	C	A	1.003e^-10	1.994e^-7	UPSTREAM Drsl1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	3779303	3L_3779303_SNP [dm3] 3L_3779303_SNP [dm6]	C	T	1.003e^-10	1.994e^-7	INTRON CG32264
3L	4844321	3L_4844321_SNP [dm3] 3L_4844321_SNP [dm6]	G	A	1.003e^-10	1.994e^-7	INTERGENIC
3L	5154839	3L_5154839_SNP [dm3] 3L_5161739_SNP [dm6]	G	A	1.003e^-10	1.994e^-7	INTRON shep
3L	548717	3L_548717_SNP [dm3] 3L_548717_SNP [dm6]	T	C	1.003e^-10	1.994e^-7	INTRON hipk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	7634630	3L_7634630_SNP [dm3] 3L_7641530_SNP [dm6]	C	T	1.003e^-10	1.994e^-7	SYNONYMOUS_CODING CG7506	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3L	7743720	3L_7743720_SNP [dm3] 3L_7750620_SNP [dm6]	A	T	1.003e^-10	1.994e^-7	DOWNSTREAM CG13685 INTRON CG32373
3L	8329880	3L_8329880_SNP [dm3] 3L_8336780_SNP [dm6]	C	T	1.003e^-10	1.994e^-7	INTRON Cpr66Cb
3L	9519098	3L_9519098_SNP [dm3] 3L_9525998_SNP [dm6]	T	A	1.003e^-10	1.994e^-7	UPSTREAM CG33700 INTERGENIC
3R	10247458	3R_10247458_SNP [dm3] 3R_14421736_SNP [dm6]	A	G	1.003e^-10	1.994e^-7	UTR_3_PRIME natalisin DOWNSTREAM CR44176 INTRON cv-c	TF binding site mE1_TFBS_cad
3R	12546149	3R_12546149_MNP [dm3] 3R_16720427_MNP [dm6]	CCA	TGG	1.003e^-10	1.994e^-7	INTRON Ubx	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	12547813	3R_12547813_SNP [dm3] 3R_16722091_SNP [dm6]	C	T	1.003e^-10	1.994e^-7	INTRON Ubx	TF binding site BDTNP1_TFBS_da
3R	12567835	3R_12567835_SNP [dm3] 3R_16742113_SNP [dm6]	A	T	1.003e^-10	1.994e^-7	DOWNSTREAM bxd INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13658847	3R_13658847_DEL [dm3] 3R_17833125_DEL [dm6]	CTAGATGCTCCCACC...	C	1.003e^-10	1.994e^-7	INTRON tinc
3R	14126821	3R_14126821_SNP [dm3] 3R_18301099_SNP [dm6]	T	C	1.003e^-10	1.994e^-7	SYNONYMOUS_CODING CG18600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	15251167	3R_15251167_SNP [dm3] 3R_19425445_SNP [dm6]	G	T	1.003e^-10	1.994e^-7	UPSTREAM CG3517 INTRON CG31221
3R	17761551	3R_17761551_SNP [dm3] 3R_21935829_SNP [dm6]	A	T	1.003e^-10	1.994e^-7	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21000202	3R_21000202_SNP [dm3] 3R_25174480_SNP [dm6]	G	A	1.003e^-10	1.994e^-7	INTRON lobo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	21493827	3R_21493827_SNP [dm3] 3R_25668105_SNP [dm6]	T	G	1.003e^-10	1.994e^-7	INTRON Lgr3
3R	22147252	3R_22147252_SNP [dm3] 3R_26321530_SNP [dm6]	A	T	1.003e^-10	1.994e^-7	INTRON CG33970	TF binding site mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_zfh1
3R	22616429	3R_22616429_SNP [dm3] 3R_26790707_SNP [dm6]	A	G	1.003e^-10	1.994e^-7	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	3600889	3R_3600889_SNP [dm3] 3R_7775167_SNP [dm6]	G	A	1.003e^-10	1.994e^-7	INTERGENIC	TF binding site mE1_TFBS_inv
3R	6459621	3R_6459621_SNP [dm3] 3R_10633899_SNP [dm6]	G	A	1.003e^-10	1.994e^-7	INTRON hth	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7644443	3R_7644443_SNP [dm3] 3R_11818721_SNP [dm6]	C	T	1.003e^-10	1.994e^-7	SYNONYMOUS_CODING glo UPSTREAM CoVa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
3R	9960850	3R_9960850_SNP [dm3] 3R_14135128_SNP [dm6]	G	A	1.003e^-10	1.994e^-7	INTERGENIC
X	12013203	X_12013203_SNP [dm3] X_12119170_SNP [dm6]	C	G	1.003e^-10	1.994e^-7	INTRON Ten-a
X	12013484	X_12013484_SNP [dm3] X_12119451_SNP [dm6]	G	A	1.003e^-10	1.994e^-7	INTRON Ten-a
X	13162327	X_13162327_SNP [dm3] X_13268294_SNP [dm6]	T	G	1.003e^-10	1.994e^-7	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
X	13265414	X_13265414_SNP [dm3] X_13371381_SNP [dm6]	A	G	1.003e^-10	1.994e^-7	UTR_5_PRIME CG1640 DOWNSTREAM dmrt11E INTRON CG1640	TF binding site BDTNP1_TFBS_dl
X	1666305	X_1666305_SNP [dm3] X_1772272_SNP [dm6]	G	T	1.003e^-10	1.994e^-7	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17079425	X_17079425_SNP [dm3] X_17185392_SNP [dm6]	A	T	1.003e^-10	1.994e^-7	INTRON baz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17079427	X_17079427_SNP [dm3] X_17185394_SNP [dm6]	C	A	1.003e^-10	1.994e^-7	INTRON baz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18152822	X_18152822_SNP [dm3] X_18258789_SNP [dm6]	T	A	1.003e^-10	1.994e^-7	UTR_3_PRIME CG15059 UPSTREAM CR45613	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18153001	X_18153001_SNP [dm3] X_18258968_SNP [dm6]	C	T	1.003e^-10	1.994e^-7	NON_SYNONYMOUS_CODING CG15059 UPSTREAM CR45613	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	19407295	X_19407295_SNP [dm3] X_19513262_SNP [dm6]	A	G	1.003e^-10	1.994e^-7	SYNONYMOUS_CODING CG14200	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21007069	X_21007069_SNP [dm3] X_21136042_SNP [dm6]	A	T	1.003e^-10	1.994e^-7	NON_SYNONYMOUS_CODING CG34120
X	6268355	X_6268355_SNP [dm3] X_6374322_SNP [dm6]	T	A	1.003e^-10	1.994e^-7	INTERGENIC
X	6517257	X_6517257_SNP [dm3] X_6623224_SNP [dm6]	C	G	1.003e^-10	1.994e^-7	INTRON pigs	TF binding site mE1_TFBS_HSA
2R	11299658	2R_11299658_SNP [dm3] 2R_15412153_SNP [dm6]	A	G	1.007e^-10	1.999e^-7	INTRON CG43729
2L	19262314	2L_19262314_SNP [dm3] 2L_19262314_SNP [dm6]	G	A	1.012e^-10	2.002e^-7	UPSTREAM CR44191 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	1095132	2L_1095132_SNP [dm3] 2L_1095132_SNP [dm6]	G	A	1.013e^-10	2.002e^-7	INTRON CG4629
2L	1095135	2L_1095135_SNP [dm3] 2L_1095135_SNP [dm6]	A	T	1.013e^-10	2.002e^-7	INTRON CG4629
2R	20410058	2R_20410058_SNP [dm3] 2R_24522535_SNP [dm6]	G	A	1.014e^-10	2.002e^-7	UTR_3_PRIME CG4612 DOWNSTREAM Ir60f
3L	16480347	3L_16480347_SNP [dm3] 3L_16487247_SNP [dm6]	T	A	1.016e^-10	2.002e^-7	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
2L	10193062	2L_10193062_SNP [dm3] 2L_10193062_SNP [dm6]	C	G	1.017e^-10	2.002e^-7	INTRON Sur
2L	1636997	2L_1636997_SNP [dm3] 2L_1636997_SNP [dm6]	C	G	1.017e^-10	2.002e^-7	INTERGENIC
2R	18251543	2R_18251543_SNP [dm3] 2R_22364038_SNP [dm6]	C	T	1.017e^-10	2.002e^-7	INTRON Liprin-gamma
3R	17367480	3R_17367480_SNP [dm3] 3R_21541758_SNP [dm6]	T	C	1.022e^-10	2.008e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2R	5885492	2R_5885492_SNP [dm3] 2R_9997987_SNP [dm6]	A	G	1.029e^-10	2.020e^-7	INTRON Pka-R2
2L	10192178	2L_10192178_SNP [dm3] 2L_10192178_SNP [dm6]	A	C	1.036e^-10	2.031e^-7	UPSTREAM CG31874 INTRON Sur
2L	3415222	2L_3415222_SNP [dm3] 2L_3415222_SNP [dm6]	G	A	1.037e^-10	2.031e^-7	INTRON pgant2
3R	7467741	3R_7467741_SNP [dm3] 3R_11642019_SNP [dm6]	C	T	1.042e^-10	2.039e^-7	INTRON Csk
2R	18788786	2R_18788786_SNP [dm3] 2R_22901263_SNP [dm6]	C	A	1.055e^-10	2.061e^-7	INTRON nahoda
X	9868452	X_9868452_SNP [dm3] X_9974419_SNP [dm6]	T	A	1.063e^-10	2.075e^-7	INTRON CG43386
X	4944389	X_4944389_SNP [dm3] X_5050356_SNP [dm6]	C	T	1.078e^-10	2.102e^-7	INTRON CR44833 & 1 other
2L	7589027	2L_7589027_SNP [dm3] 2L_7589027_SNP [dm6]	C	T	1.097e^-10	2.137e^-7	INTERGENIC
3R	18627577	3R_18627577_SNP [dm3] 3R_22801855_SNP [dm6]	A	G	1.107e^-10	2.155e^-7	INTERGENIC
3R	21478558	3R_21478558_SNP [dm3] 3R_25652836_SNP [dm6]	T	C	1.142e^-10	2.220e^-7	DOWNSTREAM Tnks INTERGENIC
3R	20571381	3R_20571381_INS [dm3] 3R_24745659_INS [dm6]	C	CAT	1.188e^-10	2.308e^-7	INTRON tok	TF binding site mE1_TFBS_chinmo
X	12107598	X_12107598_SNP [dm3] X_12213565_SNP [dm6]	G	T	1.261e^-10	2.446e^-7	INTRON Ten-a
3R	10241008	3R_10241008_SNP [dm3] 3R_14415286_SNP [dm6]	G	T	1.272e^-10	2.465e^-7	INTRON cv-c	TF binding site BDTNP1_TFBS_twi
3L	7003664	3L_7003664_INS [dm3] 3L_7010564_INS [dm6]	T	GAGG	1.342e^-10	2.498e^-7	INTRON Mp
3L	7003667	3L_7003667_DEL [dm3] 3L_7010567_DEL [dm6]	AATTAATA	A	1.342e^-10	2.498e^-7	INTRON Mp
3R	17723585	3R_17723585_SNP [dm3] 3R_21897863_SNP [dm6]	A	G	1.342e^-10	2.498e^-7	INTRON CG6678
X	9699895	X_9699895_SNP [dm3] X_9805862_SNP [dm6]	C	G	1.355e^-10	2.498e^-7	INTRON CG32698
3R	15544393	3R_15544393_SNP [dm3] 3R_19718671_SNP [dm6]	G	T	1.371e^-10	2.498e^-7	INTERGENIC
2L	3934759	2L_3934759_SNP [dm3] 2L_3934759_SNP [dm6]	A	G	1.375e^-10	2.498e^-7	INTRON fred
2L	3934761	2L_3934761_SNP [dm3] 2L_3934761_SNP [dm6]	A	T	1.375e^-10	2.498e^-7	INTRON fred
2R	9045998	2R_9045998_SNP [dm3] 2R_13158493_SNP [dm6]	A	T	1.388e^-10	2.498e^-7	UPSTREAM CG34439 & 1 other INTRON TppII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	10234701	3R_10234701_SNP [dm3] 3R_14408979_SNP [dm6]	C	G	1.393e^-10	2.498e^-7	NON_SYNONYMOUS_CODING cv-c
2L	11429940	2L_11429940_DEL [dm3] 2L_11429940_DEL [dm6]	AATAGAATCTTA...	A	1.406e^-10	2.498e^-7	INTERGENIC
2L	1633618	2L_1633618_SNP [dm3] 2L_1633618_SNP [dm6]	T	C	1.406e^-10	2.498e^-7	INTERGENIC
2L	16651437	2L_16651437_SNP [dm3] 2L_16651437_SNP [dm6]	A	T	1.406e^-10	2.498e^-7	INTRON CG42389
2L	16651572	2L_16651572_SNP [dm3] 2L_16651572_SNP [dm6]	G	A	1.406e^-10	2.498e^-7	INTRON CG42389
2L	3400600	2L_3400600_SNP [dm3] 2L_3400600_SNP [dm6]	A	T	1.406e^-10	2.498e^-7	INTERGENIC
2L	5266474	2L_5266474_SNP [dm3] 2L_5266474_SNP [dm6]	A	C	1.406e^-10	2.498e^-7	NON_SYNONYMOUS_CODING Cyp4ac2 DOWNSTREAM Cyp4ac1 INTRON tkv
2L	974748	2L_974748_SNP [dm3] 2L_974748_SNP [dm6]	A	G	1.406e^-10	2.498e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	13822317	3R_13822317_SNP [dm3] 3R_17996595_SNP [dm6]	C	T	1.407e^-10	2.498e^-7	INTRON cpo
3R	16166662	3R_16166662_SNP [dm3] 3R_20340940_SNP [dm6]	C	G	1.407e^-10	2.498e^-7	INTRON Ir92a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22570760	3R_22570760_SNP [dm3] 3R_26745038_SNP [dm6]	T	C	1.407e^-10	2.498e^-7	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	22570916	3R_22570916_SNP [dm3] 3R_26745194_SNP [dm6]	G	A	1.407e^-10	2.498e^-7	INTERGENIC
2L	21607993	2L_21607993_SNP [dm3] 2L_21607993_SNP [dm6]	G	C	1.408e^-10	2.498e^-7	INTERGENIC
2L	6231486	2L_6231486_SNP [dm3] 2L_6231486_SNP [dm6]	A	G	1.408e^-10	2.498e^-7	UPSTREAM CR44823 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1920408	2R_1920408_SNP [dm3] 2R_6032903_SNP [dm6]	T	A	1.408e^-10	2.498e^-7	INTRON SCAP	TF binding site BDTNP1_TFBS_dl
2R	1925123	2R_1925123_SNP [dm3] 2R_6037618_SNP [dm6]	C	T	1.408e^-10	2.498e^-7	INTRON CG14591	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	1944450	2R_1944450_SNP [dm3] 2R_6056945_SNP [dm6]	T	C	1.408e^-10	2.498e^-7	DOWNSTREAM CG7856 INTRON CCHa2-R
2R	1944590	2R_1944590_SNP [dm3] 2R_6057085_SNP [dm6]	A	C	1.408e^-10	2.498e^-7	DOWNSTREAM CG7856 INTRON CCHa2-R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1945796	2R_1945796_SNP [dm3] 2R_6058291_SNP [dm6]	C	A	1.408e^-10	2.498e^-7	NON_SYNONYMOUS_CODING CG7856 INTRON CCHa2-R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15805660	X_15805660_SNP [dm3] X_15911627_SNP [dm6]	T	A	1.408e^-10	2.498e^-7	UTR_5_PRIME CG8909 INTRON CG8909
2L	11201213	2L_11201213_SNP [dm3] 2L_11201213_SNP [dm6]	C	T	1.409e^-10	2.498e^-7	INTRON Ca-beta
2L	21940080	2L_21940080_SNP [dm3] 2L_21940080_SNP [dm6]	C	A	1.409e^-10	2.498e^-7	INTERGENIC
2L	22328681	2L_22328681_SNP [dm3] 2L_22328681_SNP [dm6]	G	T	1.409e^-10	2.498e^-7	INTRON CG17018
2R	12105715	2R_12105715_SNP [dm3] 2R_16218210_SNP [dm6]	A	T	1.409e^-10	2.498e^-7	INTRON mrj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16517570	2R_16517570_SNP [dm3] 2R_20630065_SNP [dm6]	T	G	1.409e^-10	2.498e^-7	SYNONYMOUS_CODING Rcd6	TF binding site mE1_TFBS_chinmo
2R	4587001	2R_4587001_SNP [dm3] 2R_8699496_SNP [dm6]	T	C	1.409e^-10	2.498e^-7	DOWNSTREAM CG8738 INTERGENIC
3L	10558261	3L_10558261_SNP [dm3] 3L_10565161_SNP [dm6]	C	A	1.409e^-10	2.498e^-7	INTRON A2bp1
3L	16151616	3L_16151616_SNP [dm3] 3L_16158516_SNP [dm6]	G	T	1.409e^-10	2.498e^-7	INTRON CG5151
3L	16240347	3L_16240347_SNP [dm3] 3L_16247247_SNP [dm6]	C	T	1.409e^-10	2.498e^-7	INTERGENIC
3L	17565674	3L_17565674_SNP [dm3] 3L_17572574_SNP [dm6]	A	G	1.409e^-10	2.498e^-7	INTRON Eip74EF	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2811585	3L_2811585_SNP [dm3] 3L_2811585_SNP [dm6]	T	C	1.409e^-10	2.498e^-7	INTRON CG43444
3L	2815902	3L_2815902_SNP [dm3] 3L_2815902_SNP [dm6]	C	A	1.409e^-10	2.498e^-7	INTRON CG43444
3L	6698534	3L_6698534_SNP [dm3] 3L_6705434_SNP [dm6]	T	A	1.409e^-10	2.498e^-7	UTR_5_PRIME CG8519
3L	7743722	3L_7743722_SNP [dm3] 3L_7750622_SNP [dm6]	A	G	1.409e^-10	2.498e^-7	DOWNSTREAM CG13685 INTRON CG32373
3R	20738520	3R_20738520_SNP [dm3] 3R_24912798_SNP [dm6]	C	T	1.409e^-10	2.498e^-7	UPSTREAM CR44267 DOWNSTREAM PIG-S INTERGENIC
3R	22616465	3R_22616465_SNP [dm3] 3R_26790743_SNP [dm6]	A	G	1.409e^-10	2.498e^-7	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	24039583	3R_24039583_SNP [dm3] 3R_28213861_SNP [dm6]	T	A	1.409e^-10	2.498e^-7	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	3790599	3R_3790599_SNP [dm3] 3R_7964877_SNP [dm6]	C	T	1.409e^-10	2.498e^-7	INTRON dsx
X	10858856	X_10858856_SNP [dm3] X_10964823_SNP [dm6]	C	T	1.409e^-10	2.498e^-7	NON_SYNONYMOUS_CODING C901 DOWNSTREAM Myo10A	TF binding site mE1_TFBS_chinmo
X	11171156	X_11171156_SNP [dm3] X_11277123_SNP [dm6]	T	C	1.409e^-10	2.498e^-7	INTRON CG44422
X	2784305	X_2784305_DEL [dm3] X_2890272_DEL [dm6]	TTTTCCGA	T	1.409e^-10	2.498e^-7	UPSTREAM CG3526 INTRON kirre	TF binding site mE1_TFBS_HSA
2L	16014855	2L_16014855_SNP [dm3] 2L_16014855_SNP [dm6]	A	G	1.411e^-10	2.498e^-7	INTRON beat-Ic
2L	16014872	2L_16014872_SNP [dm3] 2L_16014872_SNP [dm6]	C	T	1.411e^-10	2.498e^-7	INTRON beat-Ic
2L	16014874	2L_16014874_SNP [dm3] 2L_16014874_SNP [dm6]	A	T	1.411e^-10	2.498e^-7	INTRON beat-Ic
2L	1953411	2L_1953411_SNP [dm3] 2L_1953411_SNP [dm6]	A	T	1.411e^-10	2.498e^-7	INTRON erm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	2503138	2L_2503138_DEL [dm3] 2L_2503138_DEL [dm6]	CGCCAGGAAATTATGCT...	AATACAATACAA...	1.411e^-10	2.498e^-7	INTERGENIC
2L	444593	2L_444593_SNP [dm3] 2L_444593_SNP [dm6]	C	T	1.411e^-10	2.498e^-7	SYNONYMOUS_CODING ex	TF binding site mE1_TFBS_sens
2R	18148289	2R_18148289_DEL [dm3] 2R_22260784_DEL [dm6]	GCAGCG	C	1.411e^-10	2.498e^-7	INTRON dve
2R	6442702	2R_6442702_SNP [dm3] 2R_10555197_SNP [dm6]	T	A	1.411e^-10	2.498e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	1526433	3L_1526433_SNP [dm3] 3L_1526433_SNP [dm6]	G	A	1.411e^-10	2.498e^-7	INTRON CG12090	TF binding site mE1_TFBS_inv
3L	1531542	3L_1531542_SNP [dm3] 3L_1531542_SNP [dm6]	C	G	1.411e^-10	2.498e^-7	UPSTREAM Ir62a INTRON CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13895828	3R_13895828_SNP [dm3] 3R_18070106_SNP [dm6]	A	G	1.411e^-10	2.498e^-7	INTERGENIC
2R	17940120	2R_17940120_SNP [dm3] 2R_22052615_SNP [dm6]	A	G	1.412e^-10	2.498e^-7	INTERGENIC
3L	13990584	3L_13990584_SNP [dm3] 3L_13997484_SNP [dm6]	A	G	1.412e^-10	2.498e^-7	SYNONYMOUS_CODING CG17361 DOWNSTREAM 26-29-p & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	837788	3L_837788_SNP [dm3] 3L_837788_SNP [dm6]	C	T	1.412e^-10	2.498e^-7	UTR_5_PRIME CG13901 UPSTREAM CG13887 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
X	1009090	X_1009090_SNP [dm3] X_1115057_SNP [dm6]	G	T	1.412e^-10	2.498e^-7	INTRON CG3655
X	10856368	X_10856368_SNP [dm3] X_10962335_SNP [dm6]	C	T	1.412e^-10	2.498e^-7	SYNONYMOUS_CODING Myo10A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

Microbiota_OTU077 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results