DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.051e^-14)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.7185	0.0538

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2162 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	1504711	3L_1504711_SNP [dm3] 3L_1504711_SNP [dm6]	A	G	1.185e^-6	0.499	SYNONYMOUS_CODING cue INTRON Psa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12353497	X_12353497_INS [dm3] X_12459464_INS [dm6]	G	GT	1.460e^-6	0.499	DOWNSTREAM Rab40 INTERGENIC
X	12353505	X_12353505_SNP [dm3] X_12459472_SNP [dm6]	C	G	1.460e^-6	0.499	DOWNSTREAM Rab40 INTERGENIC
X	12353530	X_12353530_SNP [dm3] X_12459497_SNP [dm6]	C	T	1.604e^-6	0.499	DOWNSTREAM Rab40 INTERGENIC
X	12353460	X_12353460_SNP [dm3] X_12459427_SNP [dm6]	A	G	1.799e^-6	0.499	DOWNSTREAM Rab40 INTERGENIC
X	12353328	X_12353328_DEL [dm3] X_12459295_DEL [dm6]	CCATATTATCCA...	C	2.274e^-6	0.499	DOWNSTREAM Rab40 INTERGENIC
X	12353312	X_12353312_SNP [dm3] X_12459279_SNP [dm6]	G	T	2.597e^-6	0.499	DOWNSTREAM Rab40 INTERGENIC
2L	6113198	2L_6113198_INS [dm3] 2L_6113198_INS [dm6]	A	AGC	2.676e^-6	0.499	INTRON stai
X	12353424	X_12353424_SNP [dm3] X_12459391_SNP [dm6]	G	A	2.749e^-6	0.499	DOWNSTREAM Rab40 INTERGENIC
X	12353504	X_12353504_SNP [dm3] X_12459471_SNP [dm6]	C	A	2.770e^-6	0.499	DOWNSTREAM Rab40 INTERGENIC
X	12353418	X_12353418_SNP [dm3] X_12459385_SNP [dm6]	A	T	3.115e^-6	0.499	DOWNSTREAM Rab40 INTERGENIC
X	14037617	X_14037617_SNP [dm3] X_14143584_SNP [dm6]	C	T	3.218e^-6	0.499	INTERGENIC
3L	17428403	3L_17428403_SNP [dm3] 3L_17435303_SNP [dm6]	A	T	4.286e^-6	0.523	SYNONYMOUS_CODING CG12229 INTRON CG32176	TF binding site mE1_TFBS_sens
2L	6113211	2L_6113211_SNP [dm3] 2L_6113211_SNP [dm6]	C	A	4.450e^-6	0.523	INTRON stai
X	12353522	X_12353522_SNP [dm3] X_12459489_SNP [dm6]	C	A	4.501e^-6	0.523	DOWNSTREAM Rab40 INTERGENIC
2L	7170554	2L_7170554_SNP [dm3] 2L_7170554_SNP [dm6]	A	T	4.906e^-6	0.523	INTERGENIC
3L	10641161	3L_10641161_SNP [dm3] 3L_10648061_SNP [dm6]	C	T	5.565e^-6	0.523	INTRON CG32066
2L	3401638	2L_3401638_SNP [dm3] 2L_3401638_SNP [dm6]	G	T	5.790e^-6	0.523	INTERGENIC
X	12353511	X_12353511_SNP [dm3] X_12459478_SNP [dm6]	C	T	6.258e^-6	0.523	DOWNSTREAM Rab40 INTERGENIC
3R	1554423	3R_1554423_SNP [dm3] 3R_5728701_SNP [dm6]	C	T	6.265e^-6	0.523	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi transposable element FlyBase
3L	1171292	3L_1171292_SNP [dm3] 3L_1171292_SNP [dm6]	C	T	6.436e^-6	0.523	INTRON bab2	regulatory region REDfly_CRMs
X	12646218	X_12646218_SNP [dm3] X_12752185_SNP [dm6]	G	C	6.623e^-6	0.523	EXON CR44619	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	12353495	X_12353495_SNP [dm3] X_12459462_SNP [dm6]	C	T	6.857e^-6	0.523	DOWNSTREAM Rab40 INTERGENIC
2L	6113210	2L_6113210_SNP [dm3] 2L_6113210_SNP [dm6]	A	C	6.913e^-6	0.523	INTRON stai
3L	1520090	3L_1520090_SNP [dm3] 3L_1520090_SNP [dm6]	C	T	7.193e^-6	0.523	SYNONYMOUS_CODING Psa	TF binding site mE1_TFBS_cad
X	12646225	X_12646225_SNP [dm3] X_12752192_SNP [dm6]	C	G	7.595e^-6	0.523	EXON CR44619	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	12353474	X_12353474_SNP [dm3] X_12459441_SNP [dm6]	T	A	9.412e^-6	0.523	DOWNSTREAM Rab40 INTERGENIC
3R	13150606	3R_13150606_SNP [dm3] 3R_17324884_SNP [dm6]	G	A	9.976e^-6	0.523	INTRON beat-IIa
2L	7956330	2L_7956330_SNP [dm3] 2L_7956330_SNP [dm6]	C	T	1.001e^-5	0.523	INTRON Snoo	TF binding site mE1_TFBS_inv
2L	18201222	2L_18201222_SNP [dm3] 2L_18201222_SNP [dm6]	G	A	1.041e^-5	0.523	DOWNSTREAM CR43413 INTRON CG42750
2L	18201230	2L_18201230_SNP [dm3] 2L_18201230_SNP [dm6]	A	T	1.041e^-5	0.523	DOWNSTREAM CR43413 INTRON CG42750
2R	6366396	2R_6366396_DEL [dm3] 2R_10478891_DEL [dm6]	GTGTTCTG	G	1.084e^-5	0.523	UPSTREAM whd DOWNSTREAM trsn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	14350942	2L_14350942_SNP [dm3] 2L_14350942_SNP [dm6]	T	C	1.170e^-5	0.523	INTRON l_2_34Fc
3R	23717166	3R_23717166_SNP [dm3] 3R_27891444_SNP [dm6]	T	G	1.204e^-5	0.523	INTRON CG34353
2L	2792727	2L_2792727_INS [dm3] 2L_2792727_INS [dm6]	T	TT	1.208e^-5	0.523	UTR_3_PRIME Syt1 INTRON Syt1
3R	1599143	3R_1599143_SNP [dm3] 3R_5773421_SNP [dm6]	G	A	1.211e^-5	0.523	INTRON CG2082
3L	12474106	3L_12474106_SNP [dm3] 3L_12481006_SNP [dm6]	T	A	1.218e^-5	0.523	INTRON CG10663
3L	12474107	3L_12474107_SNP [dm3] 3L_12481007_SNP [dm6]	C	T	1.218e^-5	0.523	INTRON CG10663
2L	16340521	2L_16340521_SNP [dm3] 2L_16340521_SNP [dm6]	A	G	1.229e^-5	0.523	NON_SYNONYMOUS_CODING CG44405 UPSTREAM CG42266	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19071623	X_19071623_SNP [dm3] X_19177590_SNP [dm6]	C	T	1.288e^-5	0.523	NON_SYNONYMOUS_CODING CG7556
3L	1814842	3L_1814842_SNP [dm3] 3L_1814842_SNP [dm6]	A	T	1.296e^-5	0.523	INTRON GV1
X	20864704	X_20864704_SNP [dm3] X_20993677_SNP [dm6]	C	A	1.305e^-5	0.523	INTERGENIC
3R	19710424	3R_19710424_SNP [dm3] 3R_23884702_SNP [dm6]	G	A	1.321e^-5	0.523	INTRON Pli
2R	10898349	2R_10898349_SNP [dm3] 2R_15010844_SNP [dm6]	T	A	1.325e^-5	0.523	UPSTREAM hbs INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
3L	1520249	3L_1520249_SNP [dm3] 3L_1520249_SNP [dm6]	T	C	1.341e^-5	0.523	SYNONYMOUS_CODING Psa	TF binding site mE1_TFBS_cad
3L	11924163	3L_11924163_SNP [dm3] 3L_11931063_SNP [dm6]	G	A	1.370e^-5	0.523	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12353397	X_12353397_SNP [dm3] X_12459364_SNP [dm6]	A	T	1.372e^-5	0.523	DOWNSTREAM Rab40 INTERGENIC
2R	14556492	2R_14556492_SNP [dm3] 2R_18668987_SNP [dm6]	T	A	1.378e^-5	0.523	INTRON edl
3R	1554417	3R_1554417_SNP [dm3] 3R_5728695_SNP [dm6]	G	T	1.383e^-5	0.523	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi transposable element FlyBase
3L	14060675	3L_14060675_SNP [dm3] 3L_14067575_SNP [dm6]	C	T	1.489e^-5	0.523	INTRON CG32138
3L	11924134	3L_11924134_DEL [dm3] 3L_11931034_DEL [dm6]	TACAAT	T	1.493e^-5	0.523	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10179802	3L_10179802_DEL [dm3] 3L_10186702_DEL [dm6]	CCCAA	C	1.541e^-5	0.523	UPSTREAM dpr10 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	10238155	3R_10238155_SNP [dm3] 3R_14412433_SNP [dm6]	A	G	1.546e^-5	0.523	INTRON cv-c	TF binding site mE1_TFBS_inv
2R	2424244	2R_2424244_SNP [dm3] 2R_6536739_SNP [dm6]	T	C	1.568e^-5	0.523	INTRON jing
3R	13150582	3R_13150582_SNP [dm3] 3R_17324860_SNP [dm6]	C	T	1.574e^-5	0.523	INTRON beat-IIa
X	12353382	X_12353382_SNP [dm3] X_12459349_SNP [dm6]	A	T	1.613e^-5	0.523	DOWNSTREAM Rab40 INTERGENIC
X	12353384	X_12353384_SNP [dm3] X_12459351_SNP [dm6]	C	G	1.613e^-5	0.523	DOWNSTREAM Rab40 INTERGENIC
X	12353992	X_12353992_SNP [dm3] X_12459959_SNP [dm6]	T	C	1.632e^-5	0.523	UTR_3_PRIME Rab40
X	12353266	X_12353266_SNP [dm3] X_12459233_SNP [dm6]	G	A	1.731e^-5	0.535	DOWNSTREAM Rab40 INTERGENIC
X	12353268	X_12353268_SNP [dm3] X_12459235_SNP [dm6]	T	C	1.731e^-5	0.535	DOWNSTREAM Rab40 INTERGENIC
3L	574042	3L_574042_SNP [dm3] 3L_574042_SNP [dm6]	G	T	1.804e^-5	0.535	INTRON hipk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13804469	2L_13804469_SNP [dm3] 2L_13804469_SNP [dm6]	A	G	1.858e^-5	0.535	INTRON CAH1
X	21466619	X_21466619_DEL [dm3] X_21595592_DEL [dm6]	ACAC	A	1.878e^-5	0.535	INTERGENIC
X	12353301	X_12353301_DEL [dm3] X_12459268_DEL [dm6]	TG	C	1.976e^-5	0.535	DOWNSTREAM Rab40 INTERGENIC
2R	2424254	2R_2424254_SNP [dm3] 2R_6536749_SNP [dm6]	G	C	1.983e^-5	0.535	INTRON jing
3L	1520162	3L_1520162_SNP [dm3] 3L_1520162_SNP [dm6]	G	A	2.033e^-5	0.535	SYNONYMOUS_CODING Psa	TF binding site mE1_TFBS_cad
3L	1520652	3L_1520652_SNP [dm3] 3L_1520652_SNP [dm6]	C	T	2.033e^-5	0.535	SYNONYMOUS_CODING Psa	TF binding site mE1_TFBS_cad
3L	1520838	3L_1520838_SNP [dm3] 3L_1520838_SNP [dm6]	G	A	2.033e^-5	0.535	INTRON Psa	TF binding site mE1_TFBS_cad
3L	1521552	3L_1521552_SNP [dm3] 3L_1521552_SNP [dm6]	G	A	2.033e^-5	0.535	SYNONYMOUS_CODING Psa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7955589	2L_7955589_SNP [dm3] 2L_7955589_SNP [dm6]	A	T	2.041e^-5	0.535	INTRON Snoo
2L	7955593	2L_7955593_SNP [dm3] 2L_7955593_SNP [dm6]	A	T	2.041e^-5	0.535	INTRON Snoo
2R	9380805	2R_9380805_SNP [dm3] 2R_13493300_SNP [dm6]	T	G	2.218e^-5	0.565	INTRON bbc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1615752	2R_1615752_SNP [dm3] 2R_5728247_SNP [dm6]	T	A	2.232e^-5	0.565	UPSTREAM ap INTERGENIC
2R	10468428	2R_10468428_SNP [dm3] 2R_14580923_SNP [dm6]	G	A	2.249e^-5	0.565	INTRON ttv
X	2332359	X_2332359_SNP [dm3] X_2438326_SNP [dm6]	C	T	2.309e^-5	0.573	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5223822	2R_5223822_DEL [dm3] 2R_9336317_DEL [dm6]	TGCT	T	2.453e^-5	0.589	INTRON CG13954 & 1 other
2R	5223828	2R_5223828_INS [dm3] 2R_9336323_INS [dm6]	T	TG	2.453e^-5	0.589	INTRON CG13954 & 1 other
X	12353603	X_12353603_SNP [dm3] X_12459570_SNP [dm6]	C	A	2.475e^-5	0.589	DOWNSTREAM Rab40 INTERGENIC
2L	11183909	2L_11183909_SNP [dm3] 2L_11183909_SNP [dm6]	A	C	2.532e^-5	0.589	INTRON Ca-beta
2L	6113255	2L_6113255_SNP [dm3] 2L_6113255_SNP [dm6]	T	A	2.564e^-5	0.589	INTRON stai
2L	18871893	2L_18871893_SNP [dm3] 2L_18871893_SNP [dm6]	G	A	2.574e^-5	0.589	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20785223	X_20785223_SNP [dm3] X_20914196_SNP [dm6]	T	A	2.627e^-5	0.589	INTRON shakB
2R	16173100	2R_16173100_SNP [dm3] 2R_20285595_SNP [dm6]	A	G	2.660e^-5	0.589	SPLICE_SITE_REGION CG16868 INTRON CG16868	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9248864	3R_9248864_SNP [dm3] 3R_13423142_SNP [dm6]	A	G	2.682e^-5	0.589	DOWNSTREAM Ir87a INTERGENIC
3L	6321402	3L_6321402_SNP [dm3] 3L_6328302_SNP [dm6]	A	G	2.691e^-5	0.589	NON_SYNONYMOUS_CODING Or65c
2L	12395279	2L_12395279_SNP [dm3] 2L_12395279_SNP [dm6]	C	A	2.756e^-5	0.596	INTRON bru-2
3R	9248835	3R_9248835_SNP [dm3] 3R_13423113_SNP [dm6]	T	G	2.877e^-5	0.599	SYNONYMOUS_CODING Ir87a
X	12353347	X_12353347_SNP [dm3] X_12459314_SNP [dm6]	T	C	2.881e^-5	0.599	DOWNSTREAM Rab40 INTERGENIC
3L	16506931	3L_16506931_SNP [dm3] 3L_16513831_SNP [dm6]	T	C	2.892e^-5	0.599	INTRON CG43373
2L	6011338	2L_6011338_DEL [dm3] 2L_6011338_DEL [dm6]	TT	T	2.895e^-5	0.599	UPSTREAM CG9098 INTRON CG9098	TF binding site mE1_TFBS_Trl
2L	7956586	2L_7956586_SNP [dm3] 2L_7956586_SNP [dm6]	T	C	2.936e^-5	0.6	INTRON Snoo	TF binding site mE1_TFBS_inv
3R	24944288	3R_24944288_SNP [dm3] 3R_29118566_SNP [dm6]	A	G	3.048e^-5	0.612	UTR_3_PRIME yem DOWNSTREAM Atg14	TF binding site mE1_TFBS_chinmo
2R	16173112	2R_16173112_SNP [dm3] 2R_20285607_SNP [dm6]	T	A	3.089e^-5	0.612	INTRON CG16868	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16506926	3L_16506926_SNP [dm3] 3L_16513826_SNP [dm6]	C	G	3.139e^-5	0.612	INTRON CG43373
3L	16809873	3L_16809873_SNP [dm3] 3L_16816773_SNP [dm6]	T	G	3.163e^-5	0.612	INTRON nudC & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15436601	X_15436601_SNP [dm3] X_15542568_SNP [dm6]	A	G	3.172e^-5	0.612	INTRON Ac13E
2L	18201152	2L_18201152_SNP [dm3] 2L_18201152_SNP [dm6]	C	T	3.191e^-5	0.612	DOWNSTREAM CR43413 INTRON CG42750
3L	577515	3L_577515_SNP [dm3] 3L_577515_SNP [dm6]	G	A	3.311e^-5	0.619	UTR_3_PRIME hipk
2L	10124488	2L_10124488_SNP [dm3] 2L_10124488_SNP [dm6]	C	T	3.322e^-5	0.619	INTRON CG44153 & 1 other
3L	13545035	3L_13545035_SNP [dm3] 3L_13551935_SNP [dm6]	C	T	3.356e^-5	0.619	INTRON bru-3
2L	7170503	2L_7170503_SNP [dm3] 2L_7170503_SNP [dm6]	T	A	3.381e^-5	0.619	INTERGENIC
X	12353364	X_12353364_SNP [dm3] X_12459331_SNP [dm6]	T	A	3.445e^-5	0.619	DOWNSTREAM Rab40 INTERGENIC
X	6189839	X_6189839_SNP [dm3] X_6295806_SNP [dm6]	A	C	3.452e^-5	0.619	SYNONYMOUS_CODING CG3815 UPSTREAM CG15891	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13890738	2L_13890738_SNP [dm3] 2L_13890738_SNP [dm6]	C	T	3.460e^-5	0.619	INTRON CenG1A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7170585	2L_7170585_SNP [dm3] 2L_7170585_SNP [dm6]	T	G	3.576e^-5	0.634	INTERGENIC
3L	4763665	3L_4763665_SNP [dm3] 3L_4763665_SNP [dm6]	G	C	3.656e^-5	0.642	INTRON RhoGEF64C
3L	1669594	3L_1669594_SNP [dm3] 3L_1669594_SNP [dm6]	C	T	3.805e^-5	0.662	SYNONYMOUS_CODING RabX5 UPSTREAM RpL23A DOWNSTREAM CG13930	TF binding site mE1_TFBS_chinmo
2R	16173121	2R_16173121_SNP [dm3] 2R_20285616_SNP [dm6]	G	T	3.843e^-5	0.662	INTRON CG16868	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16340523	2L_16340523_SNP [dm3] 2L_16340523_SNP [dm6]	C	T	3.884e^-5	0.663	NON_SYNONYMOUS_CODING CG44405 UPSTREAM CG42266	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14315165	3L_14315165_DEL [dm3] 3L_14322065_DEL [dm6]	AACAACAACAACA...	A	4.013e^-5	0.673	DOWNSTREAM CR45025 INTRON fz	TF binding site mE1_TFBS_inv
3L	6393503	3L_6393503_SNP [dm3] 3L_6400403_SNP [dm6]	C	T	4.014e^-5	0.673	UPSTREAM CG42747 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA
3L	8756064	3L_8756064_SNP [dm3] 3L_8762964_SNP [dm6]	T	C	4.229e^-5	0.701	INTRON Fhos	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13941037	3L_13941037_SNP [dm3] 3L_13947937_SNP [dm6]	G	T	4.290e^-5	0.701	INTRON CG32137
2L	10601946	2L_10601946_SNP [dm3] 2L_10601946_SNP [dm6]	T	G	4.354e^-5	0.701	INTRON Trim9
2L	12395256	2L_12395256_SNP [dm3] 2L_12395256_SNP [dm6]	A	C	4.409e^-5	0.701	INTRON bru-2
3L	17428430	3L_17428430_SNP [dm3] 3L_17435330_SNP [dm6]	A	G	4.436e^-5	0.701	SYNONYMOUS_CODING CG12229 INTRON CG32176	TF binding site mE1_TFBS_sens
X	13468454	X_13468454_SNP [dm3] X_13574421_SNP [dm6]	G	A	4.524e^-5	0.701	INTRON Tango13
2L	18168657	2L_18168657_SNP [dm3] 2L_18168657_SNP [dm6]	A	T	4.564e^-5	0.701	INTRON CG42750	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	21003336	3L_21003336_SNP [dm3] 3L_21010236_SNP [dm6]	C	T	4.608e^-5	0.701	INTRON skd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2L	13890824	2L_13890824_DEL [dm3] 2L_13890824_DEL [dm6]	TT	T	4.641e^-5	0.701	INTRON CenG1A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19353738	X_19353738_SNP [dm3] X_19459705_SNP [dm6]	C	T	4.659e^-5	0.701	INTRON kek5
2R	16743299	2R_16743299_SNP [dm3] 2R_20855794_SNP [dm6]	T	A	4.665e^-5	0.701	INTERGENIC
3L	3644746	3L_3644746_SNP [dm3] 3L_3644746_SNP [dm6]	C	T	4.679e^-5	0.701	SYNONYMOUS_CODING dar1
3L	6369112	3L_6369112_SNP [dm3] 3L_6376012_SNP [dm6]	G	C	4.696e^-5	0.701	INTERGENIC
X	12588122	X_12588122_SNP [dm3] X_12694089_SNP [dm6]	G	T	4.709e^-5	0.701	INTRON Smr	TF binding site mE1_TFBS_inv
3R	23976724	3R_23976724_SNP [dm3] 3R_28151002_SNP [dm6]	G	T	4.788e^-5	0.702	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3376533	2L_3376533_SNP [dm3] 2L_3376533_SNP [dm6]	T	C	4.811e^-5	0.702	SYNONYMOUS_CODING CG9662 UPSTREAM CG15412 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3L	14244079	3L_14244079_SNP [dm3] 3L_14250979_SNP [dm6]	A	G	4.829e^-5	0.702	INTERGENIC
2R	15122146	2R_15122146_SNP [dm3] 2R_19234641_SNP [dm6]	T	C	4.930e^-5	0.703	INTRON cora
2R	15073934	2R_15073934_SNP [dm3] 2R_19186429_SNP [dm6]	A	G	4.936e^-5	0.703	INTRON hppy
2L	18871891	2L_18871891_SNP [dm3] 2L_18871891_SNP [dm6]	A	G	4.950e^-5	0.703	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	1615804	2R_1615804_SNP [dm3] 2R_5728299_SNP [dm6]	A	T	5.067e^-5	0.703	UPSTREAM ap INTERGENIC
2L	19558020	2L_19558020_MNP [dm3] 2L_19558020_MNP [dm6]	CCA	TTT	5.099e^-5	0.703	UPSTREAM Tep5 INTERGENIC
2L	19558046	2L_19558046_SNP [dm3] 2L_19558046_SNP [dm6]	G	T	5.099e^-5	0.703	UPSTREAM Tep5 INTERGENIC
2L	19558048	2L_19558048_MNP [dm3] 2L_19558048_MNP [dm6]	CCA	TAT	5.099e^-5	0.703	UTR_5_PRIME Tep5
2R	17879836	2R_17879836_SNP [dm3] 2R_21992331_SNP [dm6]	G	A	5.189e^-5	0.707	INTRON CG34370
3L	11226615	3L_11226615_SNP [dm3] 3L_11233515_SNP [dm6]	T	A	5.247e^-5	0.707	SYNONYMOUS_CODING Ir68a
3L	11226618	3L_11226618_SNP [dm3] 3L_11233518_SNP [dm6]	C	T	5.247e^-5	0.707	SYNONYMOUS_CODING Ir68a
2R	17879809	2R_17879809_SNP [dm3] 2R_21992304_SNP [dm6]	G	T	5.302e^-5	0.71	INTRON CG34370
3R	21914562	3R_21914562_SNP [dm3] 3R_26088840_SNP [dm6]	T	G	5.404e^-5	0.714	INTRON dys	regulatory region REDfly_CRMs
2R	11429437	2R_11429437_SNP [dm3] 2R_15541932_SNP [dm6]	C	T	5.540e^-5	0.714	SYNONYMOUS_CODING Vha36-1 UPSTREAM CG8187 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	10898236	2R_10898236_SNP [dm3] 2R_15010731_SNP [dm6]	T	C	5.603e^-5	0.714	UPSTREAM hbs INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
3R	21914567	3R_21914567_SNP [dm3] 3R_26088845_SNP [dm6]	T	C	5.618e^-5	0.714	INTRON dys	regulatory region REDfly_CRMs
3L	8855990	3L_8855990_SNP [dm3] 3L_8862890_SNP [dm6]	T	G	5.750e^-5	0.714	INTRON dally	TF binding site BDTNP1_TFBS_prd
2L	7147822	2L_7147822_SNP [dm3] 2L_7147822_SNP [dm6]	C	A	5.866e^-5	0.714	INTRON Pvf3	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	21914352	3R_21914352_SNP [dm3] 3R_26088630_SNP [dm6]	A	C	5.970e^-5	0.714	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	2309014	X_2309014_DEL [dm3] X_2414981_DEL [dm6]	GACAGAATTGCTG...	G	5.975e^-5	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
X	18014993	X_18014993_INS [dm3] X_18120960_INS [dm6]	G	GGAG	5.978e^-5	0.714	EXON CR45605
X	2309029	X_2309029_SNP [dm3] X_2414996_SNP [dm6]	A	G	6.025e^-5	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
X	2309038	X_2309038_SNP [dm3] X_2415005_SNP [dm6]	C	T	6.025e^-5	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
X	2309065	X_2309065_SNP [dm3] X_2415032_SNP [dm6]	A	T	6.025e^-5	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	1464744	2L_1464744_INS [dm3] 2L_1464744_INS [dm6]	A	AG	6.028e^-5	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3R	4515610	3R_4515610_SNP [dm3] 3R_8689888_SNP [dm6]	G	A	6.259e^-5	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	2309000	X_2309000_SNP [dm3] X_2414967_SNP [dm6]	T	G	6.303e^-5	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
X	2309010	X_2309010_SNP [dm3] X_2414977_SNP [dm6]	A	G	6.303e^-5	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	1703231	3R_1703231_SNP [dm3] 3R_5877509_SNP [dm6]	C	G	6.371e^-5	0.714	SYNONYMOUS_CODING CG34113 INTRON CG34113	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	1703472	3R_1703472_SNP [dm3] 3R_5877750_SNP [dm6]	G	A	6.371e^-5	0.714	NON_SYNONYMOUS_CODING CG34113 INTRON CG34113	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10696669	2L_10696669_SNP [dm3] 2L_10696669_SNP [dm6]	T	C	6.418e^-5	0.714	SYNONYMOUS_CODING CG7300 EXON CR44181	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	2426708	2R_2426708_SNP [dm3] 2R_6539203_SNP [dm6]	G	T	6.521e^-5	0.714	INTRON jing
2L	7170551	2L_7170551_INS [dm3] 2L_7170551_INS [dm6]	A	AT	6.537e^-5	0.714	INTERGENIC
3R	21914466	3R_21914466_INS [dm3] 3R_26088744_INS [dm6]	A	AAAA	6.538e^-5	0.714	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	1171265	3L_1171265_SNP [dm3] 3L_1171265_SNP [dm6]	T	C	6.543e^-5	0.714	INTRON bab2	regulatory region REDfly_CRMs
X	15422572	X_15422572_SNP [dm3] X_15528539_SNP [dm6]	G	T	6.635e^-5	0.714	INTRON Ac13E
3L	565306	3L_565306_SNP [dm3] 3L_565306_SNP [dm6]	C	A	6.639e^-5	0.714	INTRON hipk
3L	10138473	3L_10138473_SNP [dm3] 3L_10145373_SNP [dm6]	A	C	6.708e^-5	0.714	INTERGENIC
3L	10355660	3L_10355660_SNP [dm3] 3L_10362560_SNP [dm6]	T	C	6.795e^-5	0.714	EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	15027936	2L_15027936_SNP [dm3] 2L_15027936_SNP [dm6]	A	G	6.897e^-5	0.714	NON_SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
2L	15027950	2L_15027950_SNP [dm3] 2L_15027950_SNP [dm6]	A	G	6.897e^-5	0.714	NON_SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
2L	12207180	2L_12207180_SNP [dm3] 2L_12207180_SNP [dm6]	G	A	6.932e^-5	0.714	UPSTREAM CG31759 INTRON aret
X	20945789	X_20945789_SNP [dm3] X_21074762_SNP [dm6]	T	G	6.947e^-5	0.714	INTRON bves
3R	1699944	3R_1699944_SNP [dm3] 3R_5874222_SNP [dm6]	G	T	6.984e^-5	0.714	INTRON CG34113
2R	3637929	2R_3637929_SNP [dm3] 2R_7750424_SNP [dm6]	A	C	7.136e^-5	0.714	INTRON CG30497 & 1 other
2R	10156451	2R_10156451_SNP [dm3] 2R_14268946_SNP [dm6]	G	T	7.244e^-5	0.714	UTR_3_PRIME SelD	TF binding site mE1_TFBS_sens
2L	18202461	2L_18202461_SNP [dm3] 2L_18202461_SNP [dm6]	C	G	7.306e^-5	0.714	INTRON CG42750
3R	1591315	3R_1591315_SNP [dm3] 3R_5765593_SNP [dm6]	C	T	7.316e^-5	0.714	INTRON CG2082
3R	1643919	3R_1643919_SNP [dm3] 3R_5818197_SNP [dm6]	G	A	7.316e^-5	0.714	DOWNSTREAM Hpr1 INTRON CG42675	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	1649526	3R_1649526_SNP [dm3] 3R_5823804_SNP [dm6]	C	T	7.316e^-5	0.714	SYNONYMOUS_CODING CG2023 UPSTREAM dgrn	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	1651329	3R_1651329_SNP [dm3] 3R_5825607_SNP [dm6]	G	A	7.316e^-5	0.714	INTRON dgrn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	1651330	3R_1651330_SNP [dm3] 3R_5825608_SNP [dm6]	A	T	7.316e^-5	0.714	INTRON dgrn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	1651792	3R_1651792_SNP [dm3] 3R_5826070_SNP [dm6]	C	T	7.316e^-5	0.714	SYNONYMOUS_CODING dgrn
3R	1657046	3R_1657046_SNP [dm3] 3R_5831324_SNP [dm6]	T	C	7.316e^-5	0.714	NON_SYNONYMOUS_CODING glob3 UPSTREAM CG1208
3R	1658440	3R_1658440_SNP [dm3] 3R_5832718_SNP [dm6]	G	A	7.316e^-5	0.714	DOWNSTREAM glob3 INTRON CG1208	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	1679759	3R_1679759_SNP [dm3] 3R_5854037_SNP [dm6]	G	A	7.316e^-5	0.714	SYNONYMOUS_CODING CG34287 INTRON disp
3R	1700183	3R_1700183_SNP [dm3] 3R_5874461_SNP [dm6]	A	T	7.316e^-5	0.714	INTRON CG34113
2L	7956416	2L_7956416_SNP [dm3] 2L_7956416_SNP [dm6]	C	A	7.326e^-5	0.714	INTRON Snoo	TF binding site mE1_TFBS_inv
3L	21875983	3L_21875983_SNP [dm3] 3L_21882883_SNP [dm6]	A	T	7.364e^-5	0.714	INTRON mub
X	13847788	X_13847788_SNP [dm3] X_13953755_SNP [dm6]	C	G	7.428e^-5	0.714	INTRON mamo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	8954328	2L_8954328_SNP [dm3] 2L_8954328_SNP [dm6]	A	G	7.484e^-5	0.714	SYNONYMOUS_CODING CG31886	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	17101110	3R_17101110_SNP [dm3] 3R_21275388_SNP [dm6]	G	C	7.489e^-5	0.714	UTR_3_PRIME CG3301	TF binding site mE1_TFBS_cad
3R	10290242	3R_10290242_SNP [dm3] 3R_14464520_SNP [dm6]	A	G	7.497e^-5	0.714	INTRON cv-c
3L	16979095	3L_16979095_SNP [dm3] 3L_16985995_SNP [dm6]	A	G	7.525e^-5	0.714	UPSTREAM Exn INTRON Exn	TF binding site mE1_TFBS_bab1 mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	16461403	2R_16461403_SNP [dm3] 2R_20573898_SNP [dm6]	A	G	7.565e^-5	0.714	INTRON qsm	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7405945	2L_7405945_SNP [dm3] 2L_7405945_SNP [dm6]	T	C	7.628e^-5	0.714	INTRON CG5177
3L	4236638	3L_4236638_SNP [dm3] 3L_4236638_SNP [dm6]	C	T	7.650e^-5	0.714	UPSTREAM ImpL2 INTERGENIC
X	12297651	X_12297651_SNP [dm3] X_12403618_SNP [dm6]	G	T	7.674e^-5	0.714	DOWNSTREAM CG32651 INTERGENIC
3L	11924803	3L_11924803_SNP [dm3] 3L_11931703_SNP [dm6]	G	A	7.712e^-5	0.714	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12505038	3R_12505038_SNP [dm3] 3R_16679316_SNP [dm6]	G	T	7.741e^-5	0.714	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Kr
3L	10895986	3L_10895986_SNP [dm3] 3L_10902886_SNP [dm6]	T	C	7.747e^-5	0.714	INTERGENIC
3L	9284042	3L_9284042_SNP [dm3] 3L_9290942_SNP [dm6]	C	A	7.762e^-5	0.714	INTERGENIC
2L	6011024	2L_6011024_SNP [dm3] 2L_6011024_SNP [dm6]	C	T	7.812e^-5	0.714	UTR_5_PRIME CG9098 INTRON CG9098	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9872928	3L_9872928_SNP [dm3] 3L_9879828_SNP [dm6]	A	C	7.849e^-5	0.714	INTRON CG34382
3L	6695918	3L_6695918_SNP [dm3] 3L_6702818_SNP [dm6]	C	A	7.860e^-5	0.714	INTRON SP1173	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9463135	2R_9463135_SNP [dm3] 2R_13575630_SNP [dm6]	G	T	7.902e^-5	0.714	EXON CR44365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15466047	2R_15466047_SNP [dm3] 2R_19578542_SNP [dm6]	C	G	7.903e^-5	0.714	INTRON sm
3R	1768520	3R_1768520_SNP [dm3] 3R_5942798_SNP [dm6]	T	G	7.932e^-5	0.714	INTRON CG34113
3R	1700609	3R_1700609_SNP [dm3] 3R_5874887_SNP [dm6]	A	C	7.951e^-5	0.714	INTRON CG34113
3R	21914468	3R_21914468_SNP [dm3] 3R_26088746_SNP [dm6]	T	A	7.976e^-5	0.714	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	1642825	3R_1642825_SNP [dm3] 3R_5817103_SNP [dm6]	G	T	8.022e^-5	0.714	NON_SYNONYMOUS_CODING CG42675 INTRON CG42675	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	1711644	3R_1711644_SNP [dm3] 3R_5885922_SNP [dm6]	C	A	8.022e^-5	0.714	INTRON CG34113
2R	15122149	2R_15122149_SNP [dm3] 2R_19234644_SNP [dm6]	G	A	8.139e^-5	0.721	INTRON cora
2L	11183726	2L_11183726_SNP [dm3] 2L_11183726_SNP [dm6]	A	T	8.182e^-5	0.721	INTRON Ca-beta
3R	13038889	3R_13038889_SNP [dm3] 3R_17213167_SNP [dm6]	G	C	8.262e^-5	0.725	INTERGENIC
2L	16340495	2L_16340495_SNP [dm3] 2L_16340495_SNP [dm6]	G	A	8.351e^-5	0.729	SYNONYMOUS_CODING CG44405 UPSTREAM CG42266	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2991861	X_2991861_SNP [dm3] X_3097828_SNP [dm6]	C	A	8.400e^-5	0.73	INTRON kirre	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	21448792	X_21448792_SNP [dm3] X_21577765_SNP [dm6]	G	A	8.514e^-5	0.734	INTERGENIC
X	14295147	X_14295147_SNP [dm3] X_14401114_SNP [dm6]	T	A	8.517e^-5	0.734	INTRON dpr8
2L	5915522	2L_5915522_SNP [dm3] 2L_5915522_SNP [dm6]	A	G	8.721e^-5	0.746	SYNONYMOUS_CODING bchs
3L	6371982	3L_6371982_SNP [dm3] 3L_6378882_SNP [dm6]	G	C	8.774e^-5	0.746	INTERGENIC
3L	6329065	3L_6329065_DEL [dm3] 3L_6335965_DEL [dm6]	GATAAGAGCACTG...	G	8.777e^-5	0.746	INTRON CG13300	TF binding site mE1_TFBS_inv
3L	8847379	3L_8847379_SNP [dm3] 3L_8854279_SNP [dm6]	G	A	8.853e^-5	0.748	INTRON dally
X	5575840	X_5575840_SNP [dm3] X_5681807_SNP [dm6]	T	C	8.906e^-5	0.748	INTRON Gr5a EXON CR44958	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10180088	3L_10180088_SNP [dm3] 3L_10186988_SNP [dm6]	G	T	8.987e^-5	0.748	UPSTREAM dpr10 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	4466219	3L_4466219_SNP [dm3] 3L_4466219_SNP [dm6]	G	A	9.027e^-5	0.748	SYNONYMOUS_CODING CG32241
2R	11168542	2R_11168542_SNP [dm3] 2R_15281037_SNP [dm6]	T	C	9.073e^-5	0.748	SYNONYMOUS_CODING Trpm
2R	20323788	2R_20323788_SNP [dm3] 2R_24436265_SNP [dm6]	A	G	9.227e^-5	0.748	INTERGENIC
3R	19122256	3R_19122256_SNP [dm3] 3R_23296534_SNP [dm6]	T	A	9.232e^-5	0.748	INTRON pnt	TF binding site BDTNP1_TFBS_dl
2R	15094367	2R_15094367_SNP [dm3] 2R_19206862_SNP [dm6]	T	G	9.376e^-5	0.748	INTRON hppy
2R	16175408	2R_16175408_SNP [dm3] 2R_20287903_SNP [dm6]	C	A	9.388e^-5	0.748	NON_SYNONYMOUS_CODING CG34199 UPSTREAM CG16868 DOWNSTREAM Cpr56F
3L	1526433	3L_1526433_SNP [dm3] 3L_1526433_SNP [dm6]	G	A	9.397e^-5	0.748	INTRON CG12090	TF binding site mE1_TFBS_inv
2L	3401606	2L_3401606_SNP [dm3] 2L_3401606_SNP [dm6]	T	G	9.411e^-5	0.748	INTERGENIC
2L	3401615	2L_3401615_SNP [dm3] 2L_3401615_SNP [dm6]	G	T	9.411e^-5	0.748	INTERGENIC
3L	573099	3L_573099_SNP [dm3] 3L_573099_SNP [dm6]	C	T	9.450e^-5	0.748	SYNONYMOUS_CODING hipk	TF binding site mE1_TFBS_cad
2L	16336392	2L_16336392_SNP [dm3] 2L_16336392_SNP [dm6]	A	G	9.490e^-5	0.748	SYNONYMOUS_CODING CG31817	TF binding site mE1_TFBS_sens
2L	15027907	2L_15027907_SNP [dm3] 2L_15027907_SNP [dm6]	C	A	9.660e^-5	0.748	NON_SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
X	12353536	X_12353536_DEL [dm3] X_12459503_DEL [dm6]	ATATATATAAGAA...	A	9.672e^-5	0.748	DOWNSTREAM Rab40 INTERGENIC
X	615584	X_615584_SNP [dm3] X_721551_SNP [dm6]	A	T	9.845e^-5	0.748	INTRON sdk
3R	1593285	3R_1593285_SNP [dm3] 3R_5767563_SNP [dm6]	T	A	9.889e^-5	0.748	INTRON CG2082	TF binding site mE1_TFBS_cad
2R	17966094	2R_17966094_SNP [dm3] 2R_22078589_SNP [dm6]	G	T	9.917e^-5	0.748	UTR_3_PRIME GlcT-1
3L	6339111	3L_6339111_SNP [dm3] 3L_6346011_SNP [dm6]	C	T	9.983e^-5	0.748	INTRON CG13300	TF binding site mE1_TFBS_Kr
3L	6339137	3L_6339137_SNP [dm3] 3L_6346037_SNP [dm6]	A	G	9.983e^-5	0.748	INTRON CG13300	TF binding site mE1_TFBS_Kr
3L	581736	3L_581736_SNP [dm3] 3L_581736_SNP [dm6]	C	T	9.985e^-5	0.748	SYNONYMOUS_CODING Ppm1 DOWNSTREAM hipk
2R	10898170	2R_10898170_SNP [dm3] 2R_15010665_SNP [dm6]	A	G	1.020e^-4	0.748	UPSTREAM hbs INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
2L	19559019	2L_19559019_SNP [dm3] 2L_19559019_SNP [dm6]	C	T	1.024e^-4	0.748	INTRON Tep5
2R	14792009	2R_14792009_SNP [dm3] 2R_18904504_SNP [dm6]	T	G	1.035e^-4	0.748	INTRON sano	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15373951	3R_15373951_DEL [dm3] 3R_19548229_DEL [dm6]	TCCATTTCT	T	1.039e^-4	0.748	INTRON Dys
3L	22927812	3L_22927812_SNP [dm3] 3L_22934712_SNP [dm6]	C	A	1.074e^-4	0.748	INTERGENIC	TF binding site mE1_TFBS_sens
2L	10296912	2L_10296912_SNP [dm3] 2L_10296912_SNP [dm6]	T	G	1.083e^-4	0.748	UPSTREAM CR44968 INTRON CYLD
3R	1626870	3R_1626870_SNP [dm3] 3R_5801148_SNP [dm6]	A	C	1.100e^-4	0.748	INTERGENIC
3R	1650666	3R_1650666_SNP [dm3] 3R_5824944_SNP [dm6]	G	A	1.100e^-4	0.748	UTR_5_PRIME dgrn UPSTREAM CG2023	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_ttk
3R	1652095	3R_1652095_SNP [dm3] 3R_5826373_SNP [dm6]	G	T	1.100e^-4	0.748	UTR_3_PRIME dgrn
3R	1713696	3R_1713696_SNP [dm3] 3R_5887974_SNP [dm6]	G	A	1.100e^-4	0.748	INTRON CG34113
3R	1715341	3R_1715341_SNP [dm3] 3R_5889619_SNP [dm6]	C	T	1.100e^-4	0.748	INTRON CG34113	TF binding site BDTNP1_TFBS_da
X	16756548	X_16756548_SNP [dm3] X_16862515_SNP [dm6]	A	G	1.114e^-4	0.748	INTRON CG13003
3R	1708446	3R_1708446_SNP [dm3] 3R_5882724_SNP [dm6]	C	T	1.117e^-4	0.748	INTRON CG34113
2R	16175596	2R_16175596_SNP [dm3] 2R_20288091_SNP [dm6]	C	T	1.132e^-4	0.748	SYNONYMOUS_CODING CG34199 UPSTREAM CG16868 DOWNSTREAM Cpr56F
2L	12968114	2L_12968114_SNP [dm3] 2L_12968114_SNP [dm6]	C	T	1.134e^-4	0.748	DOWNSTREAM CG16800 INTERGENIC
2L	8774524	2L_8774524_SNP [dm3] 2L_8774524_SNP [dm6]	G	T	1.144e^-4	0.748	SYNONYMOUS_CODING CG9466	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11233319	3L_11233319_SNP [dm3] 3L_11240219_SNP [dm6]	C	G	1.147e^-4	0.748	INTERGENIC
3L	14235216	3L_14235216_SNP [dm3] 3L_14242116_SNP [dm6]	T	G	1.149e^-4	0.748	INTERGENIC
2L	17161085	2L_17161085_SNP [dm3] 2L_17161085_SNP [dm6]	T	A	1.152e^-4	0.748	INTRON beat-IIIa & 1 other
2R	16226664	2R_16226664_SNP [dm3] 2R_20339159_SNP [dm6]	G	C	1.157e^-4	0.748	INTERGENIC
3R	9231536	3R_9231536_SNP [dm3] 3R_13405814_SNP [dm6]	C	T	1.161e^-4	0.748	SYNONYMOUS_CODING yellow-e2 UPSTREAM yellow-e3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9248882	3R_9248882_SNP [dm3] 3R_13423160_SNP [dm6]	G	T	1.161e^-4	0.748	DOWNSTREAM Ir87a INTERGENIC
3R	9258009	3R_9258009_SNP [dm3] 3R_13432287_SNP [dm6]	G	A	1.161e^-4	0.748	SYNONYMOUS_CODING yrt
3L	16910223	3L_16910223_SNP [dm3] 3L_16917123_SNP [dm6]	T	C	1.162e^-4	0.748	INTRON Lmpt	TF binding site BDTNP1_TFBS_z
3L	1630189	3L_1630189_SNP [dm3] 3L_1630189_SNP [dm6]	A	G	1.163e^-4	0.748	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC
2L	18207633	2L_18207633_SNP [dm3] 2L_18207633_SNP [dm6]	T	A	1.169e^-4	0.748	DOWNSTREAM CG31802 INTRON CG42750
3L	1505942	3L_1505942_SNP [dm3] 3L_1505942_SNP [dm6]	G	A	1.170e^-4	0.748	INTRON Psa & 1 other	TF binding site mE1_TFBS_cad
X	612757	X_612757_SNP [dm3] X_718724_SNP [dm6]	C	T	1.173e^-4	0.748	INTRON sdk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1665534	3R_1665534_SNP [dm3] 3R_5839812_SNP [dm6]	G	T	1.173e^-4	0.748	INTERGENIC
2R	17121867	2R_17121867_SNP [dm3] 2R_21234362_SNP [dm6]	G	C	1.174e^-4	0.748	INTRON ASPP
X	14295306	X_14295306_SNP [dm3] X_14401273_SNP [dm6]	T	C	1.175e^-4	0.748	INTRON dpr8
3L	3763280	3L_3763280_SNP [dm3] 3L_3763280_SNP [dm6]	C	A	1.176e^-4	0.748	INTRON CG32264	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	19758935	X_19758935_SNP [dm3] X_19864902_SNP [dm6]	T	C	1.176e^-4	0.748	NON_SYNONYMOUS_CODING CG15618	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16810589	3L_16810589_SNP [dm3] 3L_16817489_SNP [dm6]	A	T	1.180e^-4	0.748	INTRON nudC & 1 other
3L	4055671	3L_4055671_SNP [dm3] 3L_4055671_SNP [dm6]	C	T	1.199e^-4	0.748	INTRON CG1136
3R	17099846	3R_17099846_SNP [dm3] 3R_21274124_SNP [dm6]	C	T	1.201e^-4	0.748	UPSTREAM CG3308 DOWNSTREAM CG3301 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11137858	3R_11137858_SNP [dm3] 3R_15312136_SNP [dm6]	A	G	1.210e^-4	0.748	UTR_5_PRIME Tm2 UPSTREAM Tm2 INTRON Tm2
3L	3954790	3L_3954790_SNP [dm3] 3L_3954790_SNP [dm6]	G	T	1.213e^-4	0.748	UTR_3_PRIME CG12605
X	14293569	X_14293569_SNP [dm3] X_14399536_SNP [dm6]	A	C	1.216e^-4	0.748	INTRON dpr8
3L	5044883	3L_5044883_SNP [dm3] 3L_5044883_SNP [dm6]	A	G	1.221e^-4	0.748	INTRON Con
2L	8538656	2L_8538656_SNP [dm3] 2L_8538656_SNP [dm6]	A	G	1.230e^-4	0.748	DOWNSTREAM CG17834 INTRON CG17834
2R	17798495	2R_17798495_SNP [dm3] 2R_21910990_SNP [dm6]	C	T	1.231e^-4	0.748	INTRON Fili
3L	20597522	3L_20597522_SNP [dm3] 3L_20604422_SNP [dm6]	A	C	1.235e^-4	0.748	INTRON knrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5597698	3L_5597698_INS [dm3] 3L_5604598_INS [dm6]	A	AAAAGAA	1.244e^-4	0.748	UPSTREAM mthl2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2L	9413562	2L_9413562_SNP [dm3] 2L_9413562_SNP [dm6]	T	C	1.248e^-4	0.748	INTRON Shawl
2R	10859583	2R_10859583_SNP [dm3] 2R_14972078_SNP [dm6]	G	C	1.251e^-4	0.748	SYNONYMOUS_CODING ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9823560	2L_9823560_SNP [dm3] 2L_9823560_SNP [dm6]	G	C	1.254e^-4	0.748	INTRON nAChRalpha6
3L	10178292	3L_10178292_SNP [dm3] 3L_10185192_SNP [dm6]	T	A	1.254e^-4	0.748	INTRON dpr10
3L	13786398	3L_13786398_SNP [dm3] 3L_13793298_SNP [dm6]	T	G	1.254e^-4	0.748	INTRON bru-3
3L	13786399	3L_13786399_SNP [dm3] 3L_13793299_SNP [dm6]	G	A	1.254e^-4	0.748	INTRON bru-3
3L	13936938	3L_13936938_SNP [dm3] 3L_13943838_SNP [dm6]	T	A	1.254e^-4	0.748	INTRON CG32137
3L	13937057	3L_13937057_SNP [dm3] 3L_13943957_SNP [dm6]	A	T	1.254e^-4	0.748	INTRON CG32137
3R	15251167	3R_15251167_SNP [dm3] 3R_19425445_SNP [dm6]	G	T	1.254e^-4	0.748	UPSTREAM CG3517 INTRON CG31221
X	21007069	X_21007069_SNP [dm3] X_21136042_SNP [dm6]	A	T	1.254e^-4	0.748	NON_SYNONYMOUS_CODING CG34120
X	15572121	X_15572121_DEL [dm3] X_15678088_DEL [dm6]	GGGCAGGCAGCCAGCCAAGT...	C	1.254e^-4	0.748	DOWNSTREAM CG12708 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26362625	3R_26362625_SNP [dm3] 3R_30536903_SNP [dm6]	C	T	1.257e^-4	0.748	INTRON tmod
3R	21914537	3R_21914537_SNP [dm3] 3R_26088815_SNP [dm6]	A	C	1.268e^-4	0.748	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	10138448	3L_10138448_SNP [dm3] 3L_10145348_SNP [dm6]	C	T	1.279e^-4	0.748	INTERGENIC
3R	23958792	3R_23958792_SNP [dm3] 3R_28133070_SNP [dm6]	C	G	1.296e^-4	0.748	INTERGENIC
3R	14342415	3R_14342415_SNP [dm3] 3R_18516693_SNP [dm6]	T	A	1.296e^-4	0.748	INTRON fru
X	14887643	X_14887643_SNP [dm3] X_14993610_SNP [dm6]	T	G	1.302e^-4	0.748	INTRON eag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8651423	3L_8651423_SNP [dm3] 3L_8658323_SNP [dm6]	A	G	1.302e^-4	0.748	INTERGENIC
3L	16811834	3L_16811834_SNP [dm3] 3L_16818734_SNP [dm6]	G	A	1.306e^-4	0.748	INTRON nudC & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16691806	3L_16691806_SNP [dm3] 3L_16698706_SNP [dm6]	G	C	1.306e^-4	0.748	DOWNSTREAM CR45179 INTRON Lasp & 1 other
2L	9413563	2L_9413563_SNP [dm3] 2L_9413563_SNP [dm6]	C	T	1.309e^-4	0.748	INTRON Shawl
3R	1783249	3R_1783249_SNP [dm3] 3R_5957527_SNP [dm6]	T	C	1.310e^-4	0.748	INTRON CG34113
3R	18681174	3R_18681174_SNP [dm3] 3R_22855452_SNP [dm6]	A	G	1.320e^-4	0.748	INTERGENIC
X	20028284	X_20028284_SNP [dm3] X_20134251_SNP [dm6]	G	A	1.320e^-4	0.748	INTRON CG15322
3R	21904721	3R_21904721_SNP [dm3] 3R_26078999_SNP [dm6]	G	T	1.325e^-4	0.748	INTRON dys
3R	1624588	3R_1624588_SNP [dm3] 3R_5798866_SNP [dm6]	A	T	1.332e^-4	0.748	UTR_3_PRIME CG10979 DOWNSTREAM CG10979	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	21466623	X_21466623_SNP [dm3] X_21595596_SNP [dm6]	G	T	1.336e^-4	0.748	INTERGENIC
3L	3866198	3L_3866198_SNP [dm3] 3L_3866198_SNP [dm6]	G	T	1.345e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1390337	3L_1390337_SNP [dm3] 3L_1390337_SNP [dm6]	G	T	1.349e^-4	0.748	INTRON Ptp61F	TF binding site mE1_TFBS_cad
3R	20612896	3R_20612896_SNP [dm3] 3R_24787174_SNP [dm6]	G	A	1.350e^-4	0.748	UPSTREAM CG5805 & 1 other INTRON CG5805	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10290252	3R_10290252_SNP [dm3] 3R_14464530_SNP [dm6]	T	C	1.351e^-4	0.748	INTRON cv-c
2R	19676396	2R_19676396_SNP [dm3] 2R_23788873_SNP [dm6]	T	A	1.357e^-4	0.748	INTRON CG9850	TF binding site mE1_TFBS_HSA
2L	10697222	2L_10697222_SNP [dm3] 2L_10697222_SNP [dm6]	G	A	1.378e^-4	0.748	NON_SYNONYMOUS_CODING CG7300 EXON CR44181	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10695448	2L_10695448_SNP [dm3] 2L_10695448_SNP [dm6]	C	T	1.390e^-4	0.748	SYNONYMOUS_CODING CG7300 EXON CR44181	TF binding site mE1_TFBS_cad
3L	4638762	3L_4638762_SNP [dm3] 3L_4638762_SNP [dm6]	T	C	1.390e^-4	0.748	INTRON axo
2L	799832	2L_799832_SNP [dm3] 2L_799832_SNP [dm6]	G	C	1.392e^-4	0.748	UPSTREAM CR45259 INTERGENIC
3R	1596827	3R_1596827_SNP [dm3] 3R_5771105_SNP [dm6]	A	G	1.395e^-4	0.748	INTRON CG2082
3R	1628261	3R_1628261_SNP [dm3] 3R_5802539_SNP [dm6]	G	A	1.395e^-4	0.748	UTR_5_PRIME CG11000
3L	4277196	3L_4277196_SNP [dm3] 3L_4277196_SNP [dm6]	C	T	1.413e^-4	0.748	SYNONYMOUS_CODING CG1273 UPSTREAM CG1311	TF binding site BDTNP1_TFBS_dl
X	16033870	X_16033870_SNP [dm3] X_16139837_SNP [dm6]	A	T	1.415e^-4	0.748	INTRON disco-r	TF binding site mE1_TFBS_HSA
3R	20643535	3R_20643535_SNP [dm3] 3R_24817813_SNP [dm6]	G	A	1.421e^-4	0.748	UPSTREAM CG5808 INTRON Saf-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	10177472	3L_10177472_DEL [dm3] 3L_10184372_DEL [dm6]	TGCTGCTGACAT...	T	1.422e^-4	0.748	INTRON dpr10
X	12820040	X_12820040_SNP [dm3] X_12926007_SNP [dm6]	G	T	1.428e^-4	0.748	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18186851	3L_18186851_SNP [dm3] 3L_18193751_SNP [dm6]	C	T	1.428e^-4	0.748	INTERGENIC
3R	25791634	3R_25791634_DEL [dm3] 3R_29965912_DEL [dm6]	TT	T	1.433e^-4	0.748	INTRON TkR99D
3L	12765716	3L_12765716_SNP [dm3] 3L_12772616_SNP [dm6]	G	A	1.434e^-4	0.748	INTRON Hip1
X	12354702	X_12354702_SNP [dm3] X_12460669_SNP [dm6]	T	A	1.438e^-4	0.748	INTRON Rab40
X	12354737	X_12354737_SNP [dm3] X_12460704_SNP [dm6]	A	C	1.438e^-4	0.748	INTRON Rab40
2R	2439569	2R_2439569_SNP [dm3] 2R_6552064_SNP [dm6]	A	G	1.440e^-4	0.748	INTRON jing	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10124494	2L_10124494_SNP [dm3] 2L_10124494_SNP [dm6]	C	A	1.441e^-4	0.748	INTRON CG44153 & 1 other
3L	12958351	3L_12958351_SNP [dm3] 3L_12965251_SNP [dm6]	G	C	1.444e^-4	0.748	NON_SYNONYMOUS_CODING Or69a INTRON Or69a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13936965	3L_13936965_SNP [dm3] 3L_13943865_SNP [dm6]	C	T	1.444e^-4	0.748	INTRON CG32137
3L	13936966	3L_13936966_SNP [dm3] 3L_13943866_SNP [dm6]	A	T	1.444e^-4	0.748	INTRON CG32137
2L	9413663	2L_9413663_SNP [dm3] 2L_9413663_SNP [dm6]	G	A	1.449e^-4	0.748	INTRON Shawl
2L	13327981	2L_13327981_SNP [dm3] 2L_13327981_SNP [dm6]	G	A	1.454e^-4	0.748	INTRON CG43778
2R	6605674	2R_6605674_SNP [dm3] 2R_10718169_SNP [dm6]	A	T	1.456e^-4	0.748	DOWNSTREAM stan INTRON stan
3L	21382363	3L_21382363_SNP [dm3] 3L_21389263_SNP [dm6]	C	A	1.457e^-4	0.748	INTRON rgn
3L	21383059	3L_21383059_SNP [dm3] 3L_21389959_SNP [dm6]	A	G	1.457e^-4	0.748	INTRON rgn
3R	1652197	3R_1652197_SNP [dm3] 3R_5826475_SNP [dm6]	G	A	1.459e^-4	0.748	UTR_3_PRIME dgrn
3L	9873119	3L_9873119_SNP [dm3] 3L_9880019_SNP [dm6]	T	A	1.466e^-4	0.748	INTRON CG34382	TF binding site mE1_TFBS_chinmo
2R	10897814	2R_10897814_SNP [dm3] 2R_15010309_SNP [dm6]	A	G	1.471e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_kn mE1_TFBS_Trl
2R	17131068	2R_17131068_SNP [dm3] 2R_21243563_SNP [dm6]	A	T	1.471e^-4	0.748	INTRON ASPP
2R	17131069	2R_17131069_SNP [dm3] 2R_21243564_SNP [dm6]	C	T	1.471e^-4	0.748	INTRON ASPP
3L	13134811	3L_13134811_SNP [dm3] 3L_13141711_SNP [dm6]	C	G	1.479e^-4	0.748	INTERGENIC
3L	21022157	3L_21022157_SNP [dm3] 3L_21029057_SNP [dm6]	A	C	1.482e^-4	0.748	INTRON CG10585	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	21022178	3L_21022178_SNP [dm3] 3L_21029078_SNP [dm6]	A	T	1.482e^-4	0.748	INTRON CG10585	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	23969672	3L_23969672_SNP [dm3] 3L_23976572_SNP [dm6]	A	G	1.483e^-4	0.748	INTRON CG40470
3L	23969673	3L_23969673_SNP [dm3] 3L_23976573_SNP [dm6]	T	C	1.483e^-4	0.748	INTRON CG40470
3L	574026	3L_574026_SNP [dm3] 3L_574026_SNP [dm6]	C	A	1.491e^-4	0.748	INTRON hipk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3616331	3L_3616331_SNP [dm3] 3L_3616331_SNP [dm6]	A	T	1.503e^-4	0.748	SYNONYMOUS_CODING CG10357	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	611326	X_611326_SNP [dm3] X_717293_SNP [dm6]	T	C	1.503e^-4	0.748	INTRON sdk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	12746968	X_12746968_SNP [dm3] X_12852935_SNP [dm6]	C	A	1.505e^-4	0.748	INTRON Pde9
2L	9833185	2L_9833185_SNP [dm3] 2L_9833185_SNP [dm6]	T	C	1.508e^-4	0.748	INTRON nAChRalpha6
X	21466608	X_21466608_DEL [dm3] X_21595581_DEL [dm6]	TGCGACTAC	T	1.508e^-4	0.748	INTERGENIC
3R	23602283	3R_23602283_SNP [dm3] 3R_27776561_SNP [dm6]	A	G	1.511e^-4	0.748	INTRON CG34353
2R	13809956	2R_13809956_SNP [dm3] 2R_17922451_SNP [dm6]	C	G	1.517e^-4	0.748	INTRON Elk
3R	1634099	3R_1634099_SNP [dm3] 3R_5808377_SNP [dm6]	A	T	1.520e^-4	0.748	UTR_3_PRIME CG11000
X	9216875	X_9216875_SNP [dm3] X_9322842_SNP [dm6]	A	G	1.536e^-4	0.748	SYNONYMOUS_CODING c12.2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	24067369	3L_24067369_SNP [dm3] 3L_24074269_SNP [dm6]	A	T	1.536e^-4	0.748	UTR_5_PRIME Snap25	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	842779	3L_842779_SNP [dm3] 3L_842779_SNP [dm6]	A	G	1.538e^-4	0.748	INTRON Gr61a
3L	6660839	3L_6660839_SNP [dm3] 3L_6667739_SNP [dm6]	C	G	1.544e^-4	0.748	SYNONYMOUS_CODING CG32395
3L	10644637	3L_10644637_SNP [dm3] 3L_10651537_SNP [dm6]	T	C	1.551e^-4	0.748	INTRON CG32066
3L	10644638	3L_10644638_DEL [dm3] 3L_10651538_DEL [dm6]	CG	C	1.551e^-4	0.748	INTRON CG32066
3R	17939862	3R_17939862_SNP [dm3] 3R_22114140_SNP [dm6]	T	A	1.551e^-4	0.748	SYNONYMOUS_CODING Ir94a
3R	17939941	3R_17939941_SNP [dm3] 3R_22114219_SNP [dm6]	C	A	1.553e^-4	0.748	NON_SYNONYMOUS_CODING Ir94a
2L	17161124	2L_17161124_SNP [dm3] 2L_17161124_SNP [dm6]	A	G	1.554e^-4	0.748	INTRON beat-IIIa & 1 other
X	15383653	X_15383653_INS [dm3] X_15489620_INS [dm6]	T	TCCCCAT	1.555e^-4	0.748	UPSTREAM Gmap INTRON Gmap
2L	10296889	2L_10296889_SNP [dm3] 2L_10296889_SNP [dm6]	G	A	1.565e^-4	0.748	UPSTREAM CR44968 INTRON CYLD
3R	17939877	3R_17939877_INS [dm3] 3R_22114155_INS [dm6]	A	AGAT	1.565e^-4	0.748	CODON_INSERTION Ir94a
3R	1792818	3R_1792818_SNP [dm3] 3R_5967096_SNP [dm6]	A	T	1.566e^-4	0.748	DOWNSTREAM CR44925 INTERGENIC
X	612941	X_612941_SNP [dm3] X_718908_SNP [dm6]	C	A	1.575e^-4	0.748	INTRON sdk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA transposable element FlyBase
2L	19558157	2L_19558157_SNP [dm3] 2L_19558157_SNP [dm6]	C	A	1.599e^-4	0.748	NON_SYNONYMOUS_CODING Tep5
X	20538487	X_20538487_SNP [dm3] X_20667460_SNP [dm6]	C	T	1.601e^-4	0.748	UPSTREAM CG1835 INTRON CG1835
X	6358249	X_6358249_SNP [dm3] X_6464216_SNP [dm6]	C	T	1.609e^-4	0.748	DOWNSTREAM CG42340 INTRON CG42340
2L	3401613	2L_3401613_SNP [dm3] 2L_3401613_SNP [dm6]	C	A	1.613e^-4	0.748	INTERGENIC
2L	3382458	2L_3382458_SNP [dm3] 2L_3382458_SNP [dm6]	C	A	1.613e^-4	0.748	INTERGENIC
X	15422541	X_15422541_SNP [dm3] X_15528508_SNP [dm6]	C	T	1.616e^-4	0.748	INTRON Ac13E
2L	19557124	2L_19557124_SNP [dm3] 2L_19557124_SNP [dm6]	C	T	1.619e^-4	0.748	UPSTREAM Tep5 DOWNSTREAM Tep4 INTERGENIC
3R	1687144	3R_1687144_SNP [dm3] 3R_5861422_SNP [dm6]	A	G	1.626e^-4	0.748	UPSTREAM CG2017 INTRON CG2017
2R	17987425	2R_17987425_DEL [dm3] 2R_22099920_DEL [dm6]	AA	A	1.631e^-4	0.748	UPSTREAM CG11073 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21003440	3L_21003440_SNP [dm3] 3L_21010340_SNP [dm6]	C	T	1.635e^-4	0.748	INTRON skd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
X	631003	X_631003_SNP [dm3] X_736970_SNP [dm6]	T	G	1.638e^-4	0.748	INTRON sdk
2R	16175545	2R_16175545_SNP [dm3] 2R_20288040_SNP [dm6]	A	G	1.641e^-4	0.748	SYNONYMOUS_CODING CG34199 UPSTREAM CG16868 DOWNSTREAM Cpr56F
2R	10715522	2R_10715522_SNP [dm3] 2R_14828017_SNP [dm6]	G	A	1.647e^-4	0.748	INTERGENIC
2L	6934683	2L_6934683_SNP [dm3] 2L_6934683_SNP [dm6]	G	A	1.654e^-4	0.748	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19557695	2L_19557695_SNP [dm3] 2L_19557695_SNP [dm6]	T	C	1.654e^-4	0.748	UPSTREAM Tep5 INTERGENIC
3R	26063023	3R_26063023_SNP [dm3] 3R_30237301_SNP [dm6]	A	T	1.668e^-4	0.748	UTR_3_PRIME CG43448	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2912498	2L_2912498_SNP [dm3] 2L_2912498_SNP [dm6]	A	G	1.669e^-4	0.748	INTRON lilli
2L	13328018	2L_13328018_SNP [dm3] 2L_13328018_SNP [dm6]	C	A	1.670e^-4	0.748	INTRON CG43778
2R	7821441	2R_7821441_SNP [dm3] 2R_11933936_SNP [dm6]	C	T	1.671e^-4	0.748	INTERGENIC
3L	6370611	3L_6370611_SNP [dm3] 3L_6377511_SNP [dm6]	A	T	1.678e^-4	0.748	INTERGENIC
2R	17288076	2R_17288076_SNP [dm3] 2R_21400571_SNP [dm6]	C	A	1.684e^-4	0.748	INTRON Sdc	TF binding site mE1_TFBS_cad
2L	287226	2L_287226_SNP [dm3] 2L_287226_SNP [dm6]	T	A	1.687e^-4	0.748	UPSTREAM CG3625 DOWNSTREAM Amnionless INTRON CG3625	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	7069310	2L_7069310_SNP [dm3] 2L_7069310_SNP [dm6]	G	T	1.697e^-4	0.748	NON_SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2
2L	13023138	2L_13023138_SNP [dm3] 2L_13023138_SNP [dm6]	C	T	1.709e^-4	0.748	UTR_3_PRIME CG9932
3R	25791627	3R_25791627_SNP [dm3] 3R_29965905_SNP [dm6]	G	A	1.716e^-4	0.748	INTRON TkR99D
3R	25791628	3R_25791628_SNP [dm3] 3R_29965906_SNP [dm6]	T	A	1.716e^-4	0.748	INTRON TkR99D
3R	25794183	3R_25794183_SNP [dm3] 3R_29968461_SNP [dm6]	G	C	1.716e^-4	0.748	INTRON TkR99D
3R	19314080	3R_19314080_SNP [dm3] 3R_23488358_SNP [dm6]	G	A	1.716e^-4	0.748	SYNONYMOUS_CODING Ir94h	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13761409	3R_13761409_SNP [dm3] 3R_17935687_SNP [dm6]	C	T	1.721e^-4	0.748	INTRON cpo
2R	11528006	2R_11528006_SNP [dm3] 2R_15640501_SNP [dm6]	T	C	1.727e^-4	0.748	INTRON CG42524
2R	14541196	2R_14541196_SNP [dm3] 2R_18653691_SNP [dm6]	T	C	1.731e^-4	0.748	UPSTREAM SP2637 INTRON SP2637	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	18022065	X_18022065_SNP [dm3] X_18128032_SNP [dm6]	T	C	1.731e^-4	0.748	UPSTREAM mir-210 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22140618	X_22140618_SNP [dm3] X_22738782_SNP [dm6]	A	T	1.738e^-4	0.748	INTRON CR44997	transposable element FlyBase
2R	7331810	2R_7331810_SNP [dm3] 2R_11444305_SNP [dm6]	T	G	1.745e^-4	0.748	INTRON qvr
X	5575604	X_5575604_SNP [dm3] X_5681571_SNP [dm6]	G	A	1.749e^-4	0.748	NON_SYNONYMOUS_CODING Gr5a EXON CR44958	TF binding site mE1_TFBS_cad
3L	7736236	3L_7736236_INS [dm3] 3L_7743136_INS [dm6]	T	TGTTT	1.768e^-4	0.748	UPSTREAM Snmp2 INTRON CG32373
2L	3243307	2L_3243307_SNP [dm3] 2L_3243307_SNP [dm6]	C	T	1.769e^-4	0.748	INTERGENIC
3R	1604207	3R_1604207_INS [dm3] 3R_5778485_INS [dm6]	A	ATAATT	1.772e^-4	0.748	UPSTREAM CG2082 & 1 other INTRON CG2082	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	17161108	2L_17161108_SNP [dm3] 2L_17161108_SNP [dm6]	A	G	1.774e^-4	0.748	INTRON beat-IIIa & 1 other
X	20785224	X_20785224_SNP [dm3] X_20914197_SNP [dm6]	C	T	1.785e^-4	0.748	INTRON shakB
3L	16999975	3L_16999975_SNP [dm3] 3L_17006875_SNP [dm6]	C	T	1.791e^-4	0.748	INTRON CG3764
X	638871	X_638871_SNP [dm3] X_744838_SNP [dm6]	G	A	1.791e^-4	0.748	NON_SYNONYMOUS_CODING sdk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13770861	2R_13770861_SNP [dm3] 2R_17883356_SNP [dm6]	G	A	1.812e^-4	0.748	INTRON Elk
3R	23958793	3R_23958793_SNP [dm3] 3R_28133071_SNP [dm6]	C	A	1.813e^-4	0.748	INTERGENIC
2R	17404882	2R_17404882_SNP [dm3] 2R_21517377_SNP [dm6]	T	C	1.816e^-4	0.748	SYNONYMOUS_CODING CG10494 DOWNSTREAM MESK2
3L	10653170	3L_10653170_DEL [dm3] 3L_10660070_DEL [dm6]	AGATTAAATTTAA...	A	1.822e^-4	0.748	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2641281	3L_2641281_SNP [dm3] 3L_2641281_SNP [dm6]	T	G	1.825e^-4	0.748	UTR_3_PRIME CG42245 & 1 other DOWNSTREAM CG14949
3L	2484553	3L_2484553_SNP [dm3] 3L_2484553_SNP [dm6]	T	C	1.841e^-4	0.748	INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8322043	3L_8322043_SNP [dm3] 3L_8328943_SNP [dm6]	T	A	1.847e^-4	0.748	DOWNSTREAM CG34461 INTRON CG34462	TF binding site mE1_TFBS_ttk
2R	16175521	2R_16175521_SNP [dm3] 2R_20288016_SNP [dm6]	T	G	1.858e^-4	0.748	SYNONYMOUS_CODING CG34199 UPSTREAM CG16868 DOWNSTREAM Cpr56F
2R	17942342	2R_17942342_SNP [dm3] 2R_22054837_SNP [dm6]	A	G	1.863e^-4	0.748	INTERGENIC
X	637404	X_637404_SNP [dm3] X_743371_SNP [dm6]	T	C	1.864e^-4	0.748	NON_SYNONYMOUS_CODING sdk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12092626	2L_12092626_SNP [dm3] 2L_12092626_SNP [dm6]	A	G	1.867e^-4	0.748	UPSTREAM CR44594 INTRON Pex19	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	11924872	2R_11924872_DEL [dm3] 2R_16037367_DEL [dm6]	TGG	T	1.872e^-4	0.748	INTRON SP2353	TF binding site BDTNP1_TFBS_dl
3R	25014544	3R_25014544_SNP [dm3] 3R_29188822_SNP [dm6]	T	G	1.874e^-4	0.748	INTRON CG14509
3R	24435267	3R_24435267_SNP [dm3] 3R_28609545_SNP [dm6]	T	C	1.875e^-4	0.748	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad
2R	12162288	2R_12162288_SNP [dm3] 2R_16274783_SNP [dm6]	G	T	1.881e^-4	0.748	NON_SYNONYMOUS_CODING CG33017
3R	13150904	3R_13150904_SNP [dm3] 3R_17325182_SNP [dm6]	A	G	1.884e^-4	0.748	INTRON beat-IIa
3R	27672539	3R_27672539_SNP [dm3] 3R_31846817_SNP [dm6]	G	A	1.884e^-4	0.748	DOWNSTREAM heph & 1 other INTERGENIC
X	410258	X_410258_SNP [dm3] X_516225_SNP [dm6]	G	A	1.890e^-4	0.748	UTR_3_PRIME elav DOWNSTREAM elav INTRON arg
2L	7188847	2L_7188847_SNP [dm3] 2L_7188847_SNP [dm6]	A	G	1.890e^-4	0.748	UPSTREAM CG4496 INTRON CG4496	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	21654491	3R_21654491_DEL [dm3] 3R_25828769_DEL [dm6]	TC	T	1.893e^-4	0.748	DOWNSTREAM Mst57Dc INTERGENIC
3R	21654519	3R_21654519_SNP [dm3] 3R_25828797_SNP [dm6]	A	C	1.893e^-4	0.748	DOWNSTREAM Mst57Dc INTERGENIC
3L	2531350	3L_2531350_SNP [dm3] 3L_2531350_SNP [dm6]	A	T	1.895e^-4	0.748	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	15330523	2L_15330523_SNP [dm3] 2L_15330523_SNP [dm6]	T	A	1.899e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	15325980	X_15325980_SNP [dm3] X_15431947_SNP [dm6]	G	A	1.908e^-4	0.748	INTRON Cngl
3R	17939910	3R_17939910_SNP [dm3] 3R_22114188_SNP [dm6]	G	A	1.912e^-4	0.748	SYNONYMOUS_CODING Ir94a
3L	1503979	3L_1503979_SNP [dm3] 3L_1503979_SNP [dm6]	A	G	1.920e^-4	0.748	SPLICE_SITE_REGION cue INTRON Psa & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1504885	3L_1504885_SNP [dm3] 3L_1504885_SNP [dm6]	G	A	1.920e^-4	0.748	SYNONYMOUS_CODING cue INTRON Psa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17939776	3R_17939776_SNP [dm3] 3R_22114054_SNP [dm6]	C	A	1.922e^-4	0.748	NON_SYNONYMOUS_CODING Ir94a
2L	5915600	2L_5915600_SNP [dm3] 2L_5915600_SNP [dm6]	G	A	1.931e^-4	0.748	SYNONYMOUS_CODING bchs
3L	10445633	3L_10445633_SNP [dm3] 3L_10452533_SNP [dm6]	T	C	1.938e^-4	0.748	INTERGENIC
3L	13158151	3L_13158151_SNP [dm3] 3L_13165051_SNP [dm6]	G	T	1.939e^-4	0.748	INTERGENIC
X	22117007	X_22117007_SNP [dm3] X_22715171_SNP [dm6]	C	T	1.944e^-4	0.748	INTRON CR44997
3L	2531335	3L_2531335_SNP [dm3] 3L_2531335_SNP [dm6]	C	T	1.947e^-4	0.748	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	2531347	3L_2531347_SNP [dm3] 3L_2531347_SNP [dm6]	A	G	1.947e^-4	0.748	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	2531363	3L_2531363_SNP [dm3] 3L_2531363_SNP [dm6]	A	T	1.947e^-4	0.748	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	2531381	3L_2531381_INS [dm3] 3L_2531381_INS [dm6]	G	TT	1.947e^-4	0.748	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	10715598	2R_10715598_SNP [dm3] 2R_14828093_SNP [dm6]	T	A	1.957e^-4	0.748	INTERGENIC
X	637335	X_637335_SNP [dm3] X_743302_SNP [dm6]	T	C	1.960e^-4	0.748	NON_SYNONYMOUS_CODING sdk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17620564	2R_17620564_SNP [dm3] 2R_21733059_SNP [dm6]	T	A	1.963e^-4	0.748	INTERGENIC
2R	17091410	2R_17091410_SNP [dm3] 2R_21203905_SNP [dm6]	A	T	1.965e^-4	0.748	INTRON Glycogenin & 1 other
3R	1634345	3R_1634345_SNP [dm3] 3R_5808623_SNP [dm6]	G	T	1.965e^-4	0.748	UTR_3_PRIME CG11000
3L	6436517	3L_6436517_SNP [dm3] 3L_6443417_SNP [dm6]	A	C	1.973e^-4	0.748	INTRON CG42747
2R	4069389	2R_4069389_SNP [dm3] 2R_8181884_SNP [dm6]	G	T	1.977e^-4	0.748	INTRON LRP1
X	2221290	X_2221290_SNP [dm3] X_2327257_SNP [dm6]	T	C	1.987e^-4	0.748	SYNONYMOUS_CODING CG2854 INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4785582	X_4785582_SNP [dm3] X_4891549_SNP [dm6]	G	A	1.987e^-4	0.748	INTRON CG42594
2L	3243309	2L_3243309_SNP [dm3] 2L_3243309_SNP [dm6]	T	C	1.992e^-4	0.748	INTERGENIC
X	19759219	X_19759219_SNP [dm3] X_19865186_SNP [dm6]	A	G	1.994e^-4	0.748	SYNONYMOUS_CODING CG15618 UPSTREAM Hers	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	2665678	3L_2665678_SNP [dm3] 3L_2665678_SNP [dm6]	C	T	2.000e^-4	0.748	INTRON Fife
2L	11368632	2L_11368632_SNP [dm3] 2L_11368632_SNP [dm6]	A	T	2.003e^-4	0.748	SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_cad
3L	6964122	3L_6964122_SNP [dm3] 3L_6971022_SNP [dm6]	T	G	2.009e^-4	0.748	SYNONYMOUS_CODING CG9953 DOWNSTREAM CG10063	TF binding site mE1_TFBS_sens
3L	565320	3L_565320_SNP [dm3] 3L_565320_SNP [dm6]	G	A	2.013e^-4	0.748	INTRON hipk
2L	14096547	2L_14096547_SNP [dm3] 2L_14096547_SNP [dm6]	C	T	2.014e^-4	0.748	INTERGENIC
3R	20066648	3R_20066648_SNP [dm3] 3R_24240926_SNP [dm6]	C	T	2.020e^-4	0.748	SYNONYMOUS_CODING mask	TF binding site mE1_TFBS_cad
2L	16695275	2L_16695275_SNP [dm3] 2L_16695275_SNP [dm6]	G	A	2.024e^-4	0.748	UPSTREAM grp INTRON grp
3L	13130657	3L_13130657_SNP [dm3] 3L_13137557_SNP [dm6]	T	C	2.028e^-4	0.748	DOWNSTREAM CG33262 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	13136277	3L_13136277_SNP [dm3] 3L_13143177_SNP [dm6]	T	A	2.028e^-4	0.748	INTERGENIC
3R	1588872	3R_1588872_SNP [dm3] 3R_5763150_SNP [dm6]	G	T	2.037e^-4	0.748	INTRON CG2082
3R	1625405	3R_1625405_SNP [dm3] 3R_5799683_SNP [dm6]	T	A	2.045e^-4	0.748	UTR_3_PRIME CG10979 DOWNSTREAM CG10979
3L	15217355	3L_15217355_SNP [dm3] 3L_15224255_SNP [dm6]	T	A	2.047e^-4	0.748	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	19392968	3R_19392968_SNP [dm3] 3R_23567246_SNP [dm6]	G	A	2.048e^-4	0.748	INTRON beat-IV
X	12355009	X_12355009_SNP [dm3] X_12460976_SNP [dm6]	T	C	2.049e^-4	0.748	INTRON Rab40
X	14295297	X_14295297_SNP [dm3] X_14401264_SNP [dm6]	A	T	2.050e^-4	0.748	INTRON dpr8
2L	11492967	2L_11492967_SNP [dm3] 2L_11492967_SNP [dm6]	G	C	2.051e^-4	0.748	INTERGENIC
3L	5788247	3L_5788247_SNP [dm3] 3L_5795147_SNP [dm6]	G	A	2.064e^-4	0.748	UPSTREAM Bre1 INTRON Tektin-C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8941608	2L_8941608_SNP [dm3] 2L_8941608_SNP [dm6]	C	A	2.064e^-4	0.748	SYNONYMOUS_CODING CG9510 DOWNSTREAM CG9515	TF binding site mE1_TFBS_cad
3L	13235551	3L_13235551_SNP [dm3] 3L_13242451_SNP [dm6]	T	C	2.066e^-4	0.748	INTRON caps
3L	9255243	3L_9255243_SNP [dm3] 3L_9262143_SNP [dm6]	C	T	2.099e^-4	0.748	INTRON GluRIB	TF binding site BDTNP1_TFBS_twi
3R	13174547	3R_13174547_SNP [dm3] 3R_17348825_SNP [dm6]	T	A	2.099e^-4	0.748	INTRON beat-IIa
2L	18201126	2L_18201126_SNP [dm3] 2L_18201126_SNP [dm6]	A	C	2.099e^-4	0.748	DOWNSTREAM CR43413 INTRON CG42750 EXON CR43413
3R	25009358	3R_25009358_SNP [dm3] 3R_29183636_SNP [dm6]	C	G	2.101e^-4	0.748	INTRON CG14509
3R	18871721	3R_18871721_SNP [dm3] 3R_23045999_SNP [dm6]	G	A	2.102e^-4	0.748	INTRON CG17121
2R	6646737	2R_6646737_SNP [dm3] 2R_10759232_SNP [dm6]	G	A	2.104e^-4	0.748	INTRON CG33144
3L	12763467	3L_12763467_SNP [dm3] 3L_12770367_SNP [dm6]	T	G	2.110e^-4	0.748	INTRON Hip1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6149261	2L_6149261_SNP [dm3] 2L_6149261_SNP [dm6]	C	T	2.116e^-4	0.748	INTERGENIC
3R	17101096	3R_17101096_SNP [dm3] 3R_21275374_SNP [dm6]	T	A	2.133e^-4	0.748	SPLICE_SITE_REGION CG3301 DOWNSTREAM CG3301 INTRON CG3301	TF binding site mE1_TFBS_cad
3L	6839817	3L_6839817_SNP [dm3] 3L_6846717_SNP [dm6]	C	T	2.146e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens
3R	9266676	3R_9266676_SNP [dm3] 3R_13440954_SNP [dm6]	G	C	2.149e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10236804	2R_10236804_SNP [dm3] 2R_14349299_SNP [dm6]	G	A	2.154e^-4	0.748	INTRON Shroom
3R	21654494	3R_21654494_SNP [dm3] 3R_25828772_SNP [dm6]	A	T	2.160e^-4	0.748	DOWNSTREAM Mst57Dc INTERGENIC
3L	567127	3L_567127_SNP [dm3] 3L_567127_SNP [dm6]	G	A	2.166e^-4	0.748	INTRON hipk
3R	1593077	3R_1593077_SNP [dm3] 3R_5767355_SNP [dm6]	A	T	2.168e^-4	0.748	INTRON CG2082	TF binding site mE1_TFBS_cad
3L	597461	3L_597461_SNP [dm3] 3L_597461_SNP [dm6]	G	A	2.171e^-4	0.748	SYNONYMOUS_CODING MED14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21020652	3L_21020652_SNP [dm3] 3L_21027552_SNP [dm6]	A	G	2.175e^-4	0.748	UPSTREAM CG10585 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	18615038	3R_18615038_SNP [dm3] 3R_22789316_SNP [dm6]	C	A	2.185e^-4	0.748	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12820009	X_12820009_SNP [dm3] X_12925976_SNP [dm6]	A	T	2.192e^-4	0.748	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	21003406	3L_21003406_SNP [dm3] 3L_21010306_SNP [dm6]	A	T	2.194e^-4	0.748	INTRON skd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2R	3686754	2R_3686754_SNP [dm3] 2R_7799249_SNP [dm6]	C	A	2.196e^-4	0.748	NON_SYNONYMOUS_CODING mus205	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11706845	3L_11706845_SNP [dm3] 3L_11713745_SNP [dm6]	G	T	2.199e^-4	0.748	INTRON CG14132
2L	7188756	2L_7188756_SNP [dm3] 2L_7188756_SNP [dm6]	A	T	2.200e^-4	0.748	UPSTREAM CG4496 INTRON CG4496	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17130305	2R_17130305_SNP [dm3] 2R_21242800_SNP [dm6]	C	A	2.206e^-4	0.748	INTRON ASPP
X	631008	X_631008_SNP [dm3] X_736975_SNP [dm6]	A	G	2.209e^-4	0.748	INTRON sdk
3L	5686819	3L_5686819_SNP [dm3] 3L_5693719_SNP [dm6]	C	T	2.221e^-4	0.748	INTRON sif
2L	18110765	2L_18110765_SNP [dm3] 2L_18110765_SNP [dm6]	A	G	2.226e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_bcd
2L	7170666	2L_7170666_SNP [dm3] 2L_7170666_SNP [dm6]	A	G	2.234e^-4	0.748	INTERGENIC
2L	19558154	2L_19558154_SNP [dm3] 2L_19558154_SNP [dm6]	A	G	2.259e^-4	0.748	SYNONYMOUS_CODING Tep5
3L	10815711	3L_10815711_SNP [dm3] 3L_10822611_SNP [dm6]	A	G	2.263e^-4	0.748	INTERGENIC
3L	176565	3L_176565_SNP [dm3] 3L_176565_SNP [dm6]	A	T	2.264e^-4	0.748	UTR_3_PRIME Vdup1 UPSTREAM CG7049	TF binding site mE1_TFBS_cad
3L	5430614	3L_5430614_SNP [dm3] 3L_5437514_SNP [dm6]	C	T	2.274e^-4	0.748	INTRON CG34391
3R	13150546	3R_13150546_SNP [dm3] 3R_17324824_SNP [dm6]	A	T	2.291e^-4	0.748	INTRON beat-IIa
3R	12907930	3R_12907930_SNP [dm3] 3R_17082208_SNP [dm6]	G	T	2.296e^-4	0.748	UPSTREAM kuk INTRON kuk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	1505884	3L_1505884_SNP [dm3] 3L_1505884_SNP [dm6]	C	T	2.304e^-4	0.748	INTRON Psa & 1 other	TF binding site mE1_TFBS_cad
3L	1514147	3L_1514147_SNP [dm3] 3L_1514147_SNP [dm6]	G	C	2.304e^-4	0.748	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da
X	8626742	X_8626742_SNP [dm3] X_8732709_SNP [dm6]	C	T	2.305e^-4	0.748	INTERGENIC
3R	5763818	3R_5763818_DEL [dm3] 3R_9938096_DEL [dm6]	AGAAAGTGGGAAA...	A	2.308e^-4	0.748	INTRON Glut4EF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6409164	X_6409164_SNP [dm3] X_6515131_SNP [dm6]	G	C	2.309e^-4	0.748	INTRON CG42340
3L	4775592	3L_4775592_SNP [dm3] 3L_4775592_SNP [dm6]	A	T	2.310e^-4	0.748	INTRON RhoGEF64C
2R	14340984	2R_14340984_SNP [dm3] 2R_18453479_SNP [dm6]	T	G	2.311e^-4	0.748	SYNONYMOUS_CODING CG17669 DOWNSTREAM CG5190	TF binding site mE1_TFBS_cad
3R	11137126	3R_11137126_SNP [dm3] 3R_15311404_SNP [dm6]	T	C	2.312e^-4	0.748	UPSTREAM Tm2 INTRON Tm2	regulatory region REDfly_CRMs
3R	18871625	3R_18871625_SNP [dm3] 3R_23045903_SNP [dm6]	G	A	2.318e^-4	0.748	SYNONYMOUS_CODING CG17121
3R	1626757	3R_1626757_SNP [dm3] 3R_5801035_SNP [dm6]	C	G	2.322e^-4	0.748	INTERGENIC
3R	1604204	3R_1604204_INS [dm3] 3R_5778482_INS [dm6]	A	ATGG	2.323e^-4	0.748	UPSTREAM CG2082 & 1 other INTRON CG2082	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	3243295	2L_3243295_SNP [dm3] 2L_3243295_SNP [dm6]	T	C	2.327e^-4	0.748	INTERGENIC
2L	1782654	2L_1782654_SNP [dm3] 2L_1782654_SNP [dm6]	G	A	2.328e^-4	0.748	INTERGENIC	regulatory region REDfly_CRMs
3L	11707672	3L_11707672_SNP [dm3] 3L_11714572_SNP [dm6]	C	A	2.333e^-4	0.748	INTRON CG14132
3L	11708021	3L_11708021_SNP [dm3] 3L_11714921_SNP [dm6]	T	A	2.333e^-4	0.748	INTRON CG14132	TF binding site mE1_TFBS_Trl
3L	11708035	3L_11708035_MNP [dm3] 3L_11714935_MNP [dm6]	GTT	ACG	2.333e^-4	0.748	INTRON CG14132	TF binding site mE1_TFBS_Trl
3L	11708083	3L_11708083_SNP [dm3] 3L_11714983_SNP [dm6]	G	A	2.333e^-4	0.748	INTRON CG14132	TF binding site mE1_TFBS_Trl
3R	25110021	3R_25110021_SNP [dm3] 3R_29284299_SNP [dm6]	C	T	2.335e^-4	0.748	INTERGENIC	regulatory region REDfly_CRMs
3R	1593076	3R_1593076_SNP [dm3] 3R_5767354_SNP [dm6]	C	A	2.347e^-4	0.748	INTRON CG2082	TF binding site mE1_TFBS_cad
2L	8286321	2L_8286321_SNP [dm3] 2L_8286321_SNP [dm6]	C	T	2.347e^-4	0.748	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	17398756	2R_17398756_SNP [dm3] 2R_21511251_SNP [dm6]	A	T	2.348e^-4	0.748	SPLICE_SITE_REGION MESK2 INTRON MESK2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	18061622	2L_18061622_SNP [dm3] 2L_18061622_SNP [dm6]	A	G	2.374e^-4	0.748	INTRON rdo
2L	16340526	2L_16340526_SNP [dm3] 2L_16340526_SNP [dm6]	A	G	2.381e^-4	0.748	NON_SYNONYMOUS_CODING CG44405 UPSTREAM CG42266	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19361885	X_19361885_SNP [dm3] X_19467852_SNP [dm6]	C	G	2.387e^-4	0.748	INTRON kek5
2L	11193066	2L_11193066_SNP [dm3] 2L_11193066_SNP [dm6]	G	A	2.388e^-4	0.748	INTRON Ca-beta
2L	11193516	2L_11193516_SNP [dm3] 2L_11193516_SNP [dm6]	G	A	2.388e^-4	0.748	INTRON Ca-beta
2L	11194671	2L_11194671_SNP [dm3] 2L_11194671_SNP [dm6]	G	A	2.388e^-4	0.748	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2L	11195106	2L_11195106_SNP [dm3] 2L_11195106_SNP [dm6]	A	T	2.388e^-4	0.748	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_inv
2L	8917537	2L_8917537_SNP [dm3] 2L_8917537_SNP [dm6]	G	A	2.388e^-4	0.748	INTRON CG34398
2L	8943954	2L_8943954_SNP [dm3] 2L_8943954_SNP [dm6]	C	T	2.388e^-4	0.748	NON_SYNONYMOUS_CODING C1GalTA UPSTREAM CG9515	TF binding site mE1_TFBS_cad
3L	6381673	3L_6381673_SNP [dm3] 3L_6388573_SNP [dm6]	G	C	2.388e^-4	0.748	INTERGENIC
3L	6381811	3L_6381811_SNP [dm3] 3L_6388711_SNP [dm6]	G	A	2.388e^-4	0.748	INTERGENIC
3R	1739600	3R_1739600_SNP [dm3] 3R_5913878_SNP [dm6]	G	A	2.399e^-4	0.748	INTRON CG34113
3R	23281182	3R_23281182_SNP [dm3] 3R_27455460_SNP [dm6]	C	A	2.401e^-4	0.748	INTERGENIC
3L	6393768	3L_6393768_SNP [dm3] 3L_6400668_SNP [dm6]	C	A	2.405e^-4	0.748	UTR_5_PRIME CG42747	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	9413558	2L_9413558_SNP [dm3] 2L_9413558_SNP [dm6]	G	C	2.410e^-4	0.748	INTRON Shawl
2L	9413570	2L_9413570_SNP [dm3] 2L_9413570_SNP [dm6]	C	G	2.410e^-4	0.748	INTRON Shawl
2L	6554136	2L_6554136_DEL [dm3] 2L_6554136_DEL [dm6]	TGC	T	2.411e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13593658	2L_13593658_SNP [dm3] 2L_13593658_SNP [dm6]	T	C	2.412e^-4	0.748	INTRON kuz
X	10333001	X_10333001_SNP [dm3] X_10438968_SNP [dm6]	T	C	2.416e^-4	0.748	INTRON CG32683
X	10333056	X_10333056_SNP [dm3] X_10439023_SNP [dm6]	C	T	2.416e^-4	0.748	INTRON CG32683
3R	10232419	3R_10232419_SNP [dm3] 3R_14406697_SNP [dm6]	A	G	2.422e^-4	0.748	INTRON cv-c
3R	14738548	3R_14738548_SNP [dm3] 3R_18912826_SNP [dm6]	A	G	2.423e^-4	0.748	SYNONYMOUS_CODING CG14291	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3R	14738558	3R_14738558_SNP [dm3] 3R_18912836_SNP [dm6]	T	C	2.423e^-4	0.748	UTR_5_PRIME CG14291	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3L	582801	3L_582801_SNP [dm3] 3L_582801_SNP [dm6]	G	C	2.426e^-4	0.748	UTR_3_PRIME Ppm1 DOWNSTREAM Kah	TF binding site BDTNP1_TFBS_twi
3L	3618319	3L_3618319_SNP [dm3] 3L_3618319_SNP [dm6]	C	A	2.426e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13590794	3L_13590794_SNP [dm3] 3L_13597694_SNP [dm6]	T	C	2.427e^-4	0.748	INTRON bru-3
2L	10646573	2L_10646573_SNP [dm3] 2L_10646573_SNP [dm6]	A	T	2.429e^-4	0.748	DOWNSTREAM CG18284 INTRON CG17097	TF binding site mE1_TFBS_inv mE1_TFBS_run
3R	13482749	3R_13482749_SNP [dm3] 3R_17657027_SNP [dm6]	A	G	2.431e^-4	0.748	UPSTREAM tRNA:CR31577 INTRON CG14322
3L	16488673	3L_16488673_SNP [dm3] 3L_16495573_SNP [dm6]	T	A	2.432e^-4	0.748	UPSTREAM CG42514 INTRON CG33158 & 2 others	TF binding site mE1_TFBS_Trl
3R	15191342	3R_15191342_SNP [dm3] 3R_19365620_SNP [dm6]	G	A	2.438e^-4	0.748	INTERGENIC
3L	8880651	3L_8880651_SNP [dm3] 3L_8887551_SNP [dm6]	G	T	2.438e^-4	0.748	DOWNSTREAM CG43169 INTRON dally
2L	13269652	2L_13269652_SNP [dm3] 2L_13269652_SNP [dm6]	T	G	2.444e^-4	0.748	INTRON CG44085
2L	285116	2L_285116_SNP [dm3] 2L_285116_SNP [dm6]	G	A	2.446e^-4	0.748	INTRON CG3625	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	13038742	3R_13038742_SNP [dm3] 3R_17213020_SNP [dm6]	T	A	2.481e^-4	0.748	INTERGENIC
2R	15375644	2R_15375644_SNP [dm3] 2R_19488139_SNP [dm6]	T	C	2.481e^-4	0.748	SYNONYMOUS_CODING Oseg6
X	6650018	X_6650018_SNP [dm3] X_6755985_SNP [dm6]	G	C	2.499e^-4	0.748	UPSTREAM CG14438 DOWNSTREAM CG14439 INTERGENIC	transposable element FlyBase
3R	13793364	3R_13793364_SNP [dm3] 3R_17967642_SNP [dm6]	G	T	2.501e^-4	0.748	SYNONYMOUS_CODING cpo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19079635	3R_19079635_SNP [dm3] 3R_23253913_SNP [dm6]	G	A	2.502e^-4	0.748	SYNONYMOUS_CODING EloA
3L	4484756	3L_4484756_SNP [dm3] 3L_4484756_SNP [dm6]	T	C	2.508e^-4	0.748	DOWNSTREAM CG13722 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
X	15436620	X_15436620_SNP [dm3] X_15542587_SNP [dm6]	T	A	2.518e^-4	0.748	INTRON Ac13E
2R	18808954	2R_18808954_SNP [dm3] 2R_22921431_SNP [dm6]	G	T	2.522e^-4	0.748	SYNONYMOUS_CODING Nup214	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	23969794	3L_23969794_SNP [dm3] 3L_23976694_SNP [dm6]	C	T	2.525e^-4	0.748	INTRON CG40470
2R	17926823	2R_17926823_SNP [dm3] 2R_22039318_SNP [dm6]	A	G	2.528e^-4	0.748	INTRON CG34370
X	11074981	X_11074981_SNP [dm3] X_11180948_SNP [dm6]	A	T	2.531e^-4	0.748	INTERGENIC
3L	1505596	3L_1505596_SNP [dm3] 3L_1505596_SNP [dm6]	G	A	2.537e^-4	0.748	SYNONYMOUS_CODING cue INTRON Psa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2318378	3L_2318378_SNP [dm3] 3L_2318378_SNP [dm6]	A	C	2.537e^-4	0.748	UPSTREAM CR45427 INTERGENIC
3L	1616015	3L_1616015_SNP [dm3] 3L_1616015_SNP [dm6]	T	G	2.538e^-4	0.748	UPSTREAM CG12105 INTRON CG33791 & 1 other
3L	4877533	3L_4877533_SNP [dm3] 3L_4877533_SNP [dm6]	C	A	2.552e^-4	0.748	INTRON CG17150
X	637113	X_637113_SNP [dm3] X_743080_SNP [dm6]	A	G	2.553e^-4	0.748	NON_SYNONYMOUS_CODING sdk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	13327330	2L_13327330_DEL [dm3] 2L_13327330_DEL [dm6]	GCCAAT	G	2.554e^-4	0.748	INTRON CG43778
2L	13592993	2L_13592993_SNP [dm3] 2L_13592993_SNP [dm6]	T	C	2.565e^-4	0.748	INTRON kuz
3L	11708069	3L_11708069_SNP [dm3] 3L_11714969_SNP [dm6]	A	G	2.566e^-4	0.748	INTRON CG14132	TF binding site mE1_TFBS_Trl
X	640279	X_640279_SNP [dm3] X_746246_SNP [dm6]	G	A	2.567e^-4	0.748	INTRON sdk
X	633852	X_633852_SNP [dm3] X_739819_SNP [dm6]	A	T	2.567e^-4	0.748	INTRON sdk
2L	10299895	2L_10299895_SNP [dm3] 2L_10299895_SNP [dm6]	G	T	2.570e^-4	0.748	UPSTREAM CYLD DOWNSTREAM CG13138 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	5431577	3L_5431577_DEL [dm3] 3L_5438477_DEL [dm6]	CG	C	2.580e^-4	0.748	INTRON CG34391
X	12352862	X_12352862_SNP [dm3] X_12458829_SNP [dm6]	G	A	2.591e^-4	0.748	DOWNSTREAM Rab40 INTERGENIC
3L	4236820	3L_4236820_SNP [dm3] 3L_4236820_SNP [dm6]	C	T	2.593e^-4	0.748	UPSTREAM ImpL2 INTERGENIC
3L	4237681	3L_4237681_DEL [dm3] 3L_4237681_DEL [dm6]	TAAGATA	T	2.593e^-4	0.748	INTERGENIC
3R	14855218	3R_14855218_SNP [dm3] 3R_19029496_SNP [dm6]	G	C	2.601e^-4	0.748	NON_SYNONYMOUS_CODING P5cr UPSTREAM gatA DOWNSTREAM Prp18	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10668374	2R_10668374_SNP [dm3] 2R_14780869_SNP [dm6]	C	T	2.611e^-4	0.748	INTRON kn
3L	13129467	3L_13129467_SNP [dm3] 3L_13136367_SNP [dm6]	C	T	2.622e^-4	0.748	SYNONYMOUS_CODING CG33262	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	23953422	3L_23953422_DEL [dm3] 3L_23960322_DEL [dm6]	AAT	A	2.634e^-4	0.748	INTRON CG40470
3L	6964131	3L_6964131_SNP [dm3] 3L_6971031_SNP [dm6]	C	G	2.641e^-4	0.748	NON_SYNONYMOUS_CODING CG9953 DOWNSTREAM CG10063	TF binding site mE1_TFBS_sens
X	630128	X_630128_SNP [dm3] X_736095_SNP [dm6]	T	C	2.662e^-4	0.748	INTRON sdk
X	20007761	X_20007761_SNP [dm3] X_20113728_SNP [dm6]	T	A	2.667e^-4	0.748	INTERGENIC
3L	11911670	3L_11911670_SNP [dm3] 3L_11918570_SNP [dm6]	G	A	2.673e^-4	0.748	INTRON CG44837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_ttk
2L	19558471	2L_19558471_DEL [dm3] 2L_19558471_DEL [dm6]	ATGACTG	A	2.674e^-4	0.748	INTRON Tep5
3L	1526042	3L_1526042_SNP [dm3] 3L_1526042_SNP [dm6]	A	G	2.675e^-4	0.748	INTRON CG12090
3L	18022042	3L_18022042_SNP [dm3] 3L_18028942_SNP [dm6]	A	G	2.675e^-4	0.748	INTRON Eip75B	TF binding site mE1_TFBS_HSA
3L	8743740	3L_8743740_SNP [dm3] 3L_8750640_SNP [dm6]	C	A	2.675e^-4	0.748	UPSTREAM CG13306 DOWNSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_HSA
X	12745447	X_12745447_DEL [dm3] X_12851414_DEL [dm6]	AA	A	2.680e^-4	0.748	INTRON Pde9
X	12641852	X_12641852_DEL [dm3] X_12747819_DEL [dm6]	AAAGGG	A	2.684e^-4	0.748	UTR_3_PRIME CG4004 DOWNSTREAM CG4004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26081790	3R_26081790_SNP [dm3] 3R_30256068_SNP [dm6]	A	T	2.686e^-4	0.748	INTERGENIC
3R	1591107	3R_1591107_SNP [dm3] 3R_5765385_SNP [dm6]	T	A	2.690e^-4	0.748	INTRON CG2082
3R	22427036	3R_22427036_SNP [dm3] 3R_26601314_SNP [dm6]	A	G	2.691e^-4	0.748	NON_SYNONYMOUS_CODING scrib INTRON scrib
2R	17130156	2R_17130156_SNP [dm3] 2R_21242651_SNP [dm6]	C	T	2.693e^-4	0.748	INTRON ASPP
3R	1695331	3R_1695331_SNP [dm3] 3R_5869609_SNP [dm6]	A	C	2.696e^-4	0.748	INTRON CG34113
3L	7173824	3L_7173824_SNP [dm3] 3L_7180724_SNP [dm6]	T	C	2.697e^-4	0.748	INTRON Dscam2	TF binding site mE1_TFBS_inv
3R	1554453	3R_1554453_SNP [dm3] 3R_5728731_SNP [dm6]	G	A	2.708e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi transposable element FlyBase
3L	1697942	3L_1697942_SNP [dm3] 3L_1697942_SNP [dm6]	C	G	2.709e^-4	0.748	INTRON CG7991
X	6741193	X_6741193_SNP [dm3] X_6847160_SNP [dm6]	T	C	2.714e^-4	0.748	DOWNSTREAM Cht11 INTRON CG4557
3L	13941106	3L_13941106_SNP [dm3] 3L_13948006_SNP [dm6]	A	T	2.717e^-4	0.748	INTRON CG32137
X	20957149	X_20957149_SNP [dm3] X_21086122_SNP [dm6]	T	C	2.721e^-4	0.748	INTERGENIC
X	8896438	X_8896438_SNP [dm3] X_9002405_SNP [dm6]	A	G	2.721e^-4	0.748	INTRON rdgA & 1 other
3L	4484718	3L_4484718_SNP [dm3] 3L_4484718_SNP [dm6]	G	T	2.725e^-4	0.748	DOWNSTREAM CG13722 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2L	7431612	2L_7431612_INS [dm3] 2L_7431612_INS [dm6]	A	AG	2.727e^-4	0.748	INTRON CG5958
2L	7145489	2L_7145489_SNP [dm3] 2L_7145489_SNP [dm6]	G	A	2.741e^-4	0.748	DOWNSTREAM CR44612 INTRON Pvf3
3L	4771460	3L_4771460_SNP [dm3] 3L_4771460_SNP [dm6]	T	C	2.744e^-4	0.748	INTRON RhoGEF64C
3L	8442096	3L_8442096_SNP [dm3] 3L_8448996_SNP [dm6]	T	A	2.744e^-4	0.748	UPSTREAM Gug INTRON CG6983	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	1615816	3L_1615816_SNP [dm3] 3L_1615816_SNP [dm6]	A	T	2.744e^-4	0.748	UPSTREAM CG12105 INTRON CG33791 & 1 other
2L	9182271	2L_9182271_DEL [dm3] 2L_9182271_DEL [dm6]	ATATTGGATTCCT...	A	2.745e^-4	0.748	INTRON tai	TF binding site mE1_TFBS_Trl
2L	9182286	2L_9182286_DEL [dm3] 2L_9182286_DEL [dm6]	AGATAT	A	2.745e^-4	0.748	INTRON tai	TF binding site mE1_TFBS_Trl
2L	9182293	2L_9182293_DEL [dm3] 2L_9182293_DEL [dm6]	AGCTT	A	2.745e^-4	0.748	INTRON tai	TF binding site mE1_TFBS_Trl
2L	9182329	2L_9182329_SNP [dm3] 2L_9182329_SNP [dm6]	G	A	2.745e^-4	0.748	INTRON tai	TF binding site mE1_TFBS_Trl
2L	9182363	2L_9182363_SNP [dm3] 2L_9182363_SNP [dm6]	T	C	2.745e^-4	0.748	INTRON tai	TF binding site mE1_TFBS_Trl
2R	15203757	2R_15203757_DEL [dm3] 2R_19316252_DEL [dm6]	GTT	A	2.753e^-4	0.748	INTRON Rgk1
X	12820018	X_12820018_SNP [dm3] X_12925985_SNP [dm6]	C	A	2.759e^-4	0.748	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11708046	3L_11708046_SNP [dm3] 3L_11714946_SNP [dm6]	C	A	2.772e^-4	0.748	INTRON CG14132	TF binding site mE1_TFBS_Trl
3L	11708085	3L_11708085_INS [dm3] 3L_11714985_INS [dm6]	T	AA	2.772e^-4	0.748	INTRON CG14132	TF binding site mE1_TFBS_Trl
2L	18115091	2L_18115091_SNP [dm3] 2L_18115091_SNP [dm6]	A	G	2.781e^-4	0.748	UTR_3_PRIME CG15152
3R	10298442	3R_10298442_SNP [dm3] 3R_14472720_SNP [dm6]	T	A	2.782e^-4	0.748	INTRON cv-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	14989286	X_14989286_DEL [dm3] X_15095253_DEL [dm6]	CC	C	2.783e^-4	0.748	DOWNSTREAM CG9072 INTRON Rab3-GEF
2L	7431606	2L_7431606_SNP [dm3] 2L_7431606_SNP [dm6]	T	G	2.789e^-4	0.748	INTRON CG5958
3L	14315153	3L_14315153_SNP [dm3] 3L_14322053_SNP [dm6]	A	C	2.793e^-4	0.748	DOWNSTREAM CR45025 INTRON fz	TF binding site mE1_TFBS_inv
3L	8438595	3L_8438595_SNP [dm3] 3L_8445495_SNP [dm6]	C	T	2.795e^-4	0.748	INTRON CG6983	TF binding site BDTNP1_TFBS_twi
2R	18917080	2R_18917080_SNP [dm3] 2R_23029557_SNP [dm6]	C	G	2.796e^-4	0.748	INTRON twi & 1 other
X	19758433	X_19758433_SNP [dm3] X_19864400_SNP [dm6]	A	G	2.809e^-4	0.748	SYNONYMOUS_CODING CG15618 UTR_3_PRIME CG15618	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1566379	3R_1566379_SNP [dm3] 3R_5740657_SNP [dm6]	T	A	2.811e^-4	0.748	NON_SYNONYMOUS_CODING Sym	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	1582554	3R_1582554_SNP [dm3] 3R_5756832_SNP [dm6]	C	A	2.811e^-4	0.748	NON_SYNONYMOUS_CODING Sec8
3R	1586179	3R_1586179_SNP [dm3] 3R_5760457_SNP [dm6]	G	T	2.811e^-4	0.748	DOWNSTREAM CG2082 INTRON CG2082	TF binding site mE1_TFBS_HSA
3R	1586889	3R_1586889_SNP [dm3] 3R_5761167_SNP [dm6]	A	T	2.811e^-4	0.748	UTR_3_PRIME CG2082 INTRON CG2082
3R	1588976	3R_1588976_SNP [dm3] 3R_5763254_SNP [dm6]	T	C	2.811e^-4	0.748	INTRON CG2082
3R	1591276	3R_1591276_SNP [dm3] 3R_5765554_SNP [dm6]	A	G	2.811e^-4	0.748	INTRON CG2082
3R	1591594	3R_1591594_SNP [dm3] 3R_5765872_SNP [dm6]	G	T	2.811e^-4	0.748	INTRON CG2082
3R	1598280	3R_1598280_SNP [dm3] 3R_5772558_SNP [dm6]	A	G	2.811e^-4	0.748	UPSTREAM CG2082 INTRON CG2082	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	1599897	3R_1599897_SNP [dm3] 3R_5774175_SNP [dm6]	C	T	2.811e^-4	0.748	INTRON CG2082
3R	1604191	3R_1604191_SNP [dm3] 3R_5778469_SNP [dm6]	T	G	2.811e^-4	0.748	UPSTREAM CG2082 & 1 other INTRON CG2082	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	1604192	3R_1604192_SNP [dm3] 3R_5778470_SNP [dm6]	T	G	2.811e^-4	0.748	UPSTREAM CG2082 & 1 other INTRON CG2082	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	1604194	3R_1604194_SNP [dm3] 3R_5778472_SNP [dm6]	T	A	2.811e^-4	0.748	UPSTREAM CG2082 & 1 other INTRON CG2082	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	1604195	3R_1604195_SNP [dm3] 3R_5778473_SNP [dm6]	T	G	2.811e^-4	0.748	UPSTREAM CG2082 & 1 other INTRON CG2082	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	1610574	3R_1610574_SNP [dm3] 3R_5784852_SNP [dm6]	C	A	2.811e^-4	0.748	INTRON kat-60L1
3R	1615923	3R_1615923_SNP [dm3] 3R_5790201_SNP [dm6]	G	T	2.811e^-4	0.748	SYNONYMOUS_CODING Rpn5 UPSTREAM CG2051	TF binding site mE1_TFBS_cnc mE1_TFBS_sens
3R	1620106	3R_1620106_SNP [dm3] 3R_5794384_SNP [dm6]	T	A	2.811e^-4	0.748	UPSTREAM CG10979 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	1624542	3R_1624542_SNP [dm3] 3R_5798820_SNP [dm6]	T	A	2.811e^-4	0.748	UTR_3_PRIME CG10979 DOWNSTREAM CG10979	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	1626612	3R_1626612_SNP [dm3] 3R_5800890_SNP [dm6]	C	T	2.811e^-4	0.748	DOWNSTREAM CG10979 INTERGENIC
3R	1637177	3R_1637177_SNP [dm3] 3R_5811455_SNP [dm6]	A	G	2.811e^-4	0.748	UTR_3_PRIME CG11000
3R	1639245	3R_1639245_SNP [dm3] 3R_5813523_SNP [dm6]	T	G	2.811e^-4	0.748	UPSTREAM CG42675 DOWNSTREAM CG11000 INTERGENIC
3R	1645222	3R_1645222_SNP [dm3] 3R_5819500_SNP [dm6]	C	T	2.811e^-4	0.748	SYNONYMOUS_CODING Hpr1 DOWNSTREAM CG42675	TF binding site mE1_TFBS_cad
3R	1650727	3R_1650727_SNP [dm3] 3R_5825005_SNP [dm6]	A	G	2.811e^-4	0.748	UPSTREAM CG2023 INTRON dgrn	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	1651062	3R_1651062_SNP [dm3] 3R_5825340_SNP [dm6]	A	G	2.811e^-4	0.748	NON_SYNONYMOUS_CODING dgrn UTR_5_PRIME dgrn UPSTREAM CG2023	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	1654822	3R_1654822_SNP [dm3] 3R_5829100_SNP [dm6]	G	T	2.811e^-4	0.748	UPSTREAM glob3 INTERGENIC	transposable element FlyBase
3R	1655572	3R_1655572_SNP [dm3] 3R_5829850_SNP [dm6]	C	G	2.811e^-4	0.748	UPSTREAM glob3 INTERGENIC	transposable element FlyBase
3R	1657465	3R_1657465_SNP [dm3] 3R_5831743_SNP [dm6]	T	G	2.811e^-4	0.748	UTR_5_PRIME CG1208 UTR_3_PRIME glob3
3R	1659290	3R_1659290_SNP [dm3] 3R_5833568_SNP [dm6]	C	A	2.811e^-4	0.748	INTRON CG1208
3R	1662444	3R_1662444_SNP [dm3] 3R_5836722_SNP [dm6]	C	A	2.811e^-4	0.748	UPSTREAM CR45192 INTRON CG1208	TF binding site mE1_TFBS_HSA
3R	1662466	3R_1662466_SNP [dm3] 3R_5836744_SNP [dm6]	T	G	2.811e^-4	0.748	UPSTREAM CR45192 INTRON CG1208	TF binding site mE1_TFBS_HSA
3R	1662772	3R_1662772_SNP [dm3] 3R_5837050_SNP [dm6]	A	T	2.811e^-4	0.748	SPLICE_SITE_REGION CG1208 UPSTREAM CR45192 INTRON CG1208	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	1667136	3R_1667136_INS [dm3] 3R_5841414_INS [dm6]	G	GATAAA	2.811e^-4	0.748	UTR_5_PRIME CG1213 INTRON CG1213
3R	1667137	3R_1667137_DEL [dm3] 3R_5841415_DEL [dm6]	TCCCGCTGCCGAGTGC...	T	2.811e^-4	0.748	UTR_5_PRIME CG1213 INTRON CG1213
3R	1676124	3R_1676124_SNP [dm3] 3R_5850402_SNP [dm6]	G	A	2.811e^-4	0.748	UTR_3_PRIME disp DOWNSTREAM CR10991	TF binding site mE1_TFBS_cad
3R	1686201	3R_1686201_SNP [dm3] 3R_5860479_SNP [dm6]	A	G	2.811e^-4	0.748	INTRON CG2017
3R	1687985	3R_1687985_SNP [dm3] 3R_5862263_SNP [dm6]	C	T	2.811e^-4	0.748	SYNONYMOUS_CODING CG2017 UPSTREAM CG2017 DOWNSTREAM CG34113 INTRON CG2017	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	1689851	3R_1689851_SNP [dm3] 3R_5864129_SNP [dm6]	G	A	2.811e^-4	0.748	UTR_3_PRIME CG34113
3R	1703006	3R_1703006_SNP [dm3] 3R_5877284_SNP [dm6]	C	T	2.811e^-4	0.748	SYNONYMOUS_CODING CG34113 INTRON CG34113	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1704563	3R_1704563_SNP [dm3] 3R_5878841_SNP [dm6]	G	A	2.811e^-4	0.748	INTRON CG34113
3R	1706558	3R_1706558_SNP [dm3] 3R_5880836_SNP [dm6]	A	G	2.811e^-4	0.748	INTRON CG34113	TF binding site mE1_TFBS_cad
3R	1706600	3R_1706600_SNP [dm3] 3R_5880878_SNP [dm6]	G	A	2.811e^-4	0.748	INTRON CG34113	TF binding site mE1_TFBS_cad
3R	1716856	3R_1716856_SNP [dm3] 3R_5891134_SNP [dm6]	A	G	2.811e^-4	0.748	INTRON CG34113	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	1719326	3R_1719326_SNP [dm3] 3R_5893604_SNP [dm6]	C	T	2.811e^-4	0.748	INTRON CG34113
3R	1719700	3R_1719700_SNP [dm3] 3R_5893978_SNP [dm6]	C	T	2.811e^-4	0.748	INTRON CG34113
3L	1616079	3L_1616079_SNP [dm3] 3L_1616079_SNP [dm6]	T	A	2.813e^-4	0.748	UPSTREAM CG12105 INTRON CG33791 & 1 other
3L	1619826	3L_1619826_SNP [dm3] 3L_1619826_SNP [dm6]	G	A	2.825e^-4	0.748	SYNONYMOUS_CODING CG33230 INTRON ABCB7
X	21387862	X_21387862_SNP [dm3] X_21516835_SNP [dm6]	G	C	2.835e^-4	0.748	DOWNSTREAM Cyp6t1 INTRON CR45082
3L	4398896	3L_4398896_SNP [dm3] 3L_4398896_SNP [dm6]	G	A	2.835e^-4	0.748	INTRON slow
3R	11476980	3R_11476980_SNP [dm3] 3R_15651258_SNP [dm6]	G	A	2.839e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11300491	3L_11300491_SNP [dm3] 3L_11307391_SNP [dm6]	G	A	2.845e^-4	0.748	INTERGENIC
X	11673980	X_11673980_SNP [dm3] X_11779947_SNP [dm6]	G	A	2.857e^-4	0.748	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	964129	2L_964129_SNP [dm3] 2L_964129_SNP [dm6]	G	A	2.860e^-4	0.748	INTERGENIC
3L	9284083	3L_9284083_SNP [dm3] 3L_9290983_SNP [dm6]	G	A	2.881e^-4	0.748	INTERGENIC
3L	582478	3L_582478_SNP [dm3] 3L_582478_SNP [dm6]	C	A	2.885e^-4	0.748	NON_SYNONYMOUS_CODING Ppm1 DOWNSTREAM Kah
2L	11524486	2L_11524486_SNP [dm3] 2L_11524486_SNP [dm6]	G	A	2.889e^-4	0.748	SYNONYMOUS_CODING CG31705	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	10601952	2L_10601952_SNP [dm3] 2L_10601952_SNP [dm6]	C	T	2.890e^-4	0.748	INTRON Trim9
2L	12394409	2L_12394409_DEL [dm3] 2L_12394409_DEL [dm6]	TG	T	2.893e^-4	0.748	INTRON bru-2
2R	7080837	2R_7080837_SNP [dm3] 2R_11193332_SNP [dm6]	G	A	2.895e^-4	0.748	INTRON shn
3R	1718999	3R_1718999_SNP [dm3] 3R_5893277_SNP [dm6]	T	G	2.896e^-4	0.748	INTRON CG34113
X	20784305	X_20784305_SNP [dm3] X_20913278_SNP [dm6]	T	C	2.899e^-4	0.748	INTRON shakB
X	20785283	X_20785283_SNP [dm3] X_20914256_SNP [dm6]	T	C	2.899e^-4	0.748	INTRON shakB
2R	17091423	2R_17091423_SNP [dm3] 2R_21203918_SNP [dm6]	A	G	2.901e^-4	0.748	INTRON Glycogenin & 1 other
X	15174857	X_15174857_SNP [dm3] X_15280824_SNP [dm6]	C	T	2.926e^-4	0.748	INTERGENIC
2R	16745933	2R_16745933_SNP [dm3] 2R_20858428_SNP [dm6]	A	T	2.927e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	6316610	3L_6316610_DEL [dm3] 3L_6323510_DEL [dm6]	GATGATAATGATGATG...	G	2.931e^-4	0.748	INTERGENIC
3L	6747641	3L_6747641_SNP [dm3] 3L_6754541_SNP [dm6]	G	T	2.932e^-4	0.748	DOWNSTREAM CG10103 & 1 other INTRON CG10103	TF binding site mE1_TFBS_cad
3L	5044904	3L_5044904_SNP [dm3] 3L_5044904_SNP [dm6]	C	T	2.935e^-4	0.748	INTRON Con
3L	24161321	3L_24161321_SNP [dm3] 3L_24168221_SNP [dm6]	G	C	2.935e^-4	0.748	INTRON Snap25	TF binding site mE1_TFBS_sens
3R	12199683	3R_12199683_SNP [dm3] 3R_16373961_SNP [dm6]	C	T	2.936e^-4	0.748	DOWNSTREAM ss INTERGENIC
X	15174959	X_15174959_SNP [dm3] X_15280926_SNP [dm6]	G	A	2.942e^-4	0.748	INTERGENIC
3L	8757332	3L_8757332_SNP [dm3] 3L_8764232_SNP [dm6]	C	G	2.944e^-4	0.748	INTRON Fhos
3L	8761055	3L_8761055_SNP [dm3] 3L_8767955_SNP [dm6]	G	T	2.944e^-4	0.748	INTRON Fhos
2L	11183993	2L_11183993_SNP [dm3] 2L_11183993_SNP [dm6]	A	C	2.951e^-4	0.748	INTRON Ca-beta
3L	12697951	3L_12697951_SNP [dm3] 3L_12704851_SNP [dm6]	C	T	2.983e^-4	0.748	INTRON mirr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12697952	3L_12697952_SNP [dm3] 3L_12704852_SNP [dm6]	A	G	2.996e^-4	0.748	INTRON mirr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9201928	3R_9201928_SNP [dm3] 3R_13376206_SNP [dm6]	G	C	2.998e^-4	0.748	UPSTREAM CR44138 INTRON CG9813	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3643799	3L_3643799_SNP [dm3] 3L_3643799_SNP [dm6]	G	T	3.006e^-4	0.748	INTRON dar1
2L	1277241	2L_1277241_SNP [dm3] 2L_1277241_SNP [dm6]	T	G	3.016e^-4	0.748	INTRON robo3
3L	6334389	3L_6334389_INS [dm3] 3L_6341289_INS [dm6]	A	ATA	3.018e^-4	0.748	INTRON CG13300
X	11894187	X_11894187_SNP [dm3] X_12000154_SNP [dm6]	T	C	3.018e^-4	0.748	INTRON fw
X	631376	X_631376_SNP [dm3] X_737343_SNP [dm6]	A	T	3.024e^-4	0.748	INTRON sdk
3L	1171770	3L_1171770_SNP [dm3] 3L_1171770_SNP [dm6]	G	C	3.030e^-4	0.748	INTRON bab2	regulatory region REDfly_CRMs
3L	1528033	3L_1528033_SNP [dm3] 3L_1528033_SNP [dm6]	G	A	3.035e^-4	0.748	SYNONYMOUS_CODING CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1528528	3L_1528528_SNP [dm3] 3L_1528528_SNP [dm6]	A	T	3.035e^-4	0.748	DOWNSTREAM Ir62a INTRON CG12090	TF binding site mE1_TFBS_cad
3L	1534407	3L_1534407_SNP [dm3] 3L_1534407_SNP [dm6]	G	T	3.035e^-4	0.748	UPSTREAM CG12090 DOWNSTREAM CG12091 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1534411	3L_1534411_SNP [dm3] 3L_1534411_SNP [dm6]	C	A	3.035e^-4	0.748	UPSTREAM CG12090 DOWNSTREAM CG12091 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1536025	3L_1536025_SNP [dm3] 3L_1536025_SNP [dm6]	G	T	3.035e^-4	0.748	SYNONYMOUS_CODING CG12091	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4156981	3L_4156981_SNP [dm3] 3L_4156981_SNP [dm6]	C	T	3.035e^-4	0.748	INTRON nab	TF binding site mE1_TFBS_Kr
3L	8744121	3L_8744121_SNP [dm3] 3L_8751021_SNP [dm6]	T	C	3.035e^-4	0.748	DOWNSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8744514	3L_8744514_SNP [dm3] 3L_8751414_SNP [dm6]	A	T	3.035e^-4	0.748	EXON CR44527	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8745168	3L_8745168_SNP [dm3] 3L_8752068_SNP [dm6]	C	T	3.035e^-4	0.748	UPSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8745852	3L_8745852_SNP [dm3] 3L_8752752_SNP [dm6]	G	T	3.035e^-4	0.748	UPSTREAM Fhos INTERGENIC
3R	20909939	3R_20909939_SNP [dm3] 3R_25084217_SNP [dm6]	C	T	3.035e^-4	0.748	SYNONYMOUS_CODING fd96Ca	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17770813	2L_17770813_SNP [dm3] 2L_17770813_SNP [dm6]	T	A	3.038e^-4	0.748	INTRON CadN
2L	12176042	2L_12176042_DEL [dm3] 2L_12176042_DEL [dm6]	TTAGAAATTAT...	T	3.047e^-4	0.748	INTRON aret & 1 other
3R	1657309	3R_1657309_SNP [dm3] 3R_5831587_SNP [dm6]	C	T	3.050e^-4	0.748	UTR_3_PRIME glob3 UPSTREAM CG1208
3R	1669234	3R_1669234_SNP [dm3] 3R_5843512_SNP [dm6]	C	A	3.050e^-4	0.748	UPSTREAM CG1213 INTRON CG1213
3R	1675202	3R_1675202_SNP [dm3] 3R_5849480_SNP [dm6]	C	A	3.050e^-4	0.748	DOWNSTREAM disp & 1 other EXON CR10991
3L	2531519	3L_2531519_SNP [dm3] 3L_2531519_SNP [dm6]	A	G	3.052e^-4	0.748	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	11182798	3R_11182798_INS [dm3] 3R_15357076_INS [dm6]	T	TA	3.070e^-4	0.748	UPSTREAM CG5044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15073703	2R_15073703_SNP [dm3] 2R_19186198_SNP [dm6]	A	T	3.073e^-4	0.748	INTRON hppy
3R	11137112	3R_11137112_SNP [dm3] 3R_15311390_SNP [dm6]	T	A	3.074e^-4	0.748	UPSTREAM Tm2 INTRON Tm2	regulatory region REDfly_CRMs
X	3186425	X_3186425_SNP [dm3] X_3292392_SNP [dm6]	G	A	3.078e^-4	0.748	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	3186539	X_3186539_SNP [dm3] X_3292506_SNP [dm6]	C	T	3.078e^-4	0.748	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20785184	X_20785184_SNP [dm3] X_20914157_SNP [dm6]	G	T	3.081e^-4	0.748	INTRON shakB
X	20785198	X_20785198_SNP [dm3] X_20914171_SNP [dm6]	T	C	3.081e^-4	0.748	INTRON shakB
3L	18292248	3L_18292248_SNP [dm3] 3L_18299148_SNP [dm6]	G	A	3.088e^-4	0.748	SYNONYMOUS_CODING CG13700
3L	4263643	3L_4263643_DEL [dm3] 3L_4263643_DEL [dm6]	GAAAA	G	3.089e^-4	0.748	UPSTREAM CG1273 DOWNSTREAM VhaM9.7-a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	14563211	3L_14563211_SNP [dm3] 3L_14570111_SNP [dm6]	A	G	3.090e^-4	0.748	INTERGENIC
X	637041	X_637041_SNP [dm3] X_743008_SNP [dm6]	A	T	3.096e^-4	0.748	NON_SYNONYMOUS_CODING sdk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	13148642	3L_13148642_SNP [dm3] 3L_13155542_SNP [dm6]	C	T	3.100e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13840949	3L_13840949_SNP [dm3] 3L_13847849_SNP [dm6]	G	T	3.102e^-4	0.748	INTRON Hml
X	16765946	X_16765946_SNP [dm3] X_16871913_SNP [dm6]	A	T	3.112e^-4	0.748	INTRON CG13003
3R	1623202	3R_1623202_SNP [dm3] 3R_5797480_SNP [dm6]	G	A	3.115e^-4	0.748	NON_SYNONYMOUS_CODING CG10979	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	1651476	3R_1651476_SNP [dm3] 3R_5825754_SNP [dm6]	C	T	3.115e^-4	0.748	INTRON dgrn	TF binding site mE1_TFBS_HSA
2L	7170509	2L_7170509_SNP [dm3] 2L_7170509_SNP [dm6]	G	T	3.117e^-4	0.748	INTERGENIC
3L	16127303	3L_16127303_SNP [dm3] 3L_16134203_SNP [dm6]	G	A	3.117e^-4	0.748	SYNONYMOUS_CODING CG16838	TF binding site mE1_TFBS_sens
2R	10898318	2R_10898318_SNP [dm3] 2R_15010813_SNP [dm6]	T	A	3.118e^-4	0.748	UPSTREAM hbs INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
3R	25844670	3R_25844670_SNP [dm3] 3R_30018948_SNP [dm6]	C	G	3.119e^-4	0.748	SYNONYMOUS_CODING Mgat2	TF binding site mE1_TFBS_chinmo
3L	8881996	3L_8881996_SNP [dm3] 3L_8888896_SNP [dm6]	T	A	3.122e^-4	0.748	UPSTREAM CG43169 INTRON dally
3L	8881997	3L_8881997_SNP [dm3] 3L_8888897_SNP [dm6]	T	C	3.122e^-4	0.748	UPSTREAM CG43169 INTRON dally
3L	8882291	3L_8882291_SNP [dm3] 3L_8889191_SNP [dm6]	A	C	3.122e^-4	0.748	NON_SYNONYMOUS_CODING dally UPSTREAM CG43169
3L	8884240	3L_8884240_SNP [dm3] 3L_8891140_SNP [dm6]	G	A	3.122e^-4	0.748	UTR_3_PRIME dally UPSTREAM Mcm7 DOWNSTREAM dally	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1
3L	8884473	3L_8884473_SNP [dm3] 3L_8891373_SNP [dm6]	C	T	3.122e^-4	0.748	UPSTREAM Mcm7 DOWNSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3L	8884648	3L_8884648_SNP [dm3] 3L_8891548_SNP [dm6]	A	T	3.122e^-4	0.748	UPSTREAM Mcm7 DOWNSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8884651	3L_8884651_SNP [dm3] 3L_8891551_SNP [dm6]	T	C	3.122e^-4	0.748	UPSTREAM Mcm7 DOWNSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8884670	3L_8884670_SNP [dm3] 3L_8891570_SNP [dm6]	C	T	3.122e^-4	0.748	UPSTREAM Mcm7 DOWNSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8885372	3L_8885372_SNP [dm3] 3L_8892272_SNP [dm6]	G	T	3.122e^-4	0.748	INTRON Mcm7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8885385	3L_8885385_SNP [dm3] 3L_8892285_SNP [dm6]	C	T	3.122e^-4	0.748	SPLICE_SITE_REGION Mcm7 SYNONYMOUS_CODING Mcm7	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13990034	2L_13990034_SNP [dm3] 2L_13990034_SNP [dm6]	T	A	3.124e^-4	0.748	INTRON rk
X	639830	X_639830_DEL [dm3] X_745797_DEL [dm6]	TG	T	3.130e^-4	0.748	INTRON sdk
2L	14096240	2L_14096240_SNP [dm3] 2L_14096240_SNP [dm6]	T	A	3.132e^-4	0.748	INTERGENIC
3L	22998385	3L_22998385_SNP [dm3] 3L_23005285_SNP [dm6]	T	A	3.133e^-4	0.748	INTRON nrm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12820037	X_12820037_SNP [dm3] X_12926004_SNP [dm6]	C	A	3.138e^-4	0.748	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4484732	3L_4484732_SNP [dm3] 3L_4484732_SNP [dm6]	G	C	3.141e^-4	0.748	DOWNSTREAM CG13722 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3R	15074686	3R_15074686_SNP [dm3] 3R_19248964_SNP [dm6]	T	A	3.151e^-4	0.748	UPSTREAM CG5217 INTERGENIC	TF binding site mE1_TFBS_inv
3L	17566488	3L_17566488_SNP [dm3] 3L_17573388_SNP [dm6]	C	T	3.168e^-4	0.748	INTRON Eip74EF	TF binding site mE1_TFBS_Trl
2L	5265754	2L_5265754_SNP [dm3] 2L_5265754_SNP [dm6]	A	G	3.176e^-4	0.748	SYNONYMOUS_CODING Cyp4ac1 UPSTREAM Cyp4ac2 INTRON tkv	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	640904	X_640904_SNP [dm3] X_746871_SNP [dm6]	C	T	3.182e^-4	0.748	INTRON sdk
X	637266	X_637266_SNP [dm3] X_743233_SNP [dm6]	A	C	3.184e^-4	0.748	NON_SYNONYMOUS_CODING sdk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14275302	3R_14275302_SNP [dm3] 3R_18449580_SNP [dm6]	A	G	3.184e^-4	0.748	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	2161294	3L_2161294_SNP [dm3] 3L_2161294_SNP [dm6]	T	G	3.187e^-4	0.748	INTRON CG15822
3L	6322808	3L_6322808_SNP [dm3] 3L_6329708_SNP [dm6]	G	A	3.188e^-4	0.748	UTR_3_PRIME CG13300 DOWNSTREAM Or65c
2R	3672782	2R_3672782_SNP [dm3] 2R_7785277_SNP [dm6]	G	A	3.190e^-4	0.748	UPSTREAM CanB2 & 1 other EXON CR45108
2R	17410263	2R_17410263_SNP [dm3] 2R_21522758_SNP [dm6]	A	G	3.191e^-4	0.748	UTR_5_PRIME Egfr UPSTREAM CG30289	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	1697178	3R_1697178_SNP [dm3] 3R_5871456_SNP [dm6]	C	T	3.191e^-4	0.748	INTRON CG34113
3L	8884634	3L_8884634_SNP [dm3] 3L_8891534_SNP [dm6]	A	G	3.194e^-4	0.748	UPSTREAM Mcm7 DOWNSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	1895114	3R_1895114_SNP [dm3] 3R_6069392_SNP [dm6]	A	C	3.195e^-4	0.748	INTERGENIC
3R	1895115	3R_1895115_SNP [dm3] 3R_6069393_SNP [dm6]	G	C	3.195e^-4	0.748	INTERGENIC
2R	14280878	2R_14280878_SNP [dm3] 2R_18393373_SNP [dm6]	A	T	3.201e^-4	0.748	UPSTREAM Idgf5 INTERGENIC	TF binding site mE1_TFBS_inv
X	639378	X_639378_SNP [dm3] X_745345_SNP [dm6]	C	T	3.217e^-4	0.749	STOP_GAINED sdk
3R	12071362	3R_12071362_SNP [dm3] 3R_16245640_SNP [dm6]	G	T	3.218e^-4	0.749	INTRON tara	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13243223	2R_13243223_SNP [dm3] 2R_17355718_SNP [dm6]	C	A	3.218e^-4	0.749	INTRON mbl
3L	5793704	3L_5793704_SNP [dm3] 3L_5800604_SNP [dm6]	C	T	3.224e^-4	0.749	SYNONYMOUS_CODING S6k	TF binding site mE1_TFBS_cad
3R	1739612	3R_1739612_SNP [dm3] 3R_5913890_SNP [dm6]	C	A	3.230e^-4	0.749	INTRON CG34113
3R	13154513	3R_13154513_SNP [dm3] 3R_17328791_SNP [dm6]	A	G	3.234e^-4	0.749	INTRON beat-IIa
2R	10898320	2R_10898320_SNP [dm3] 2R_15010815_SNP [dm6]	T	A	3.234e^-4	0.749	UPSTREAM hbs INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
3L	11424315	3L_11424315_SNP [dm3] 3L_11431215_SNP [dm6]	A	G	3.236e^-4	0.749	INTERGENIC
2R	16738701	2R_16738701_SNP [dm3] 2R_20851196_SNP [dm6]	A	G	3.243e^-4	0.749	SYNONYMOUS_CODING CG9993	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	11674136	X_11674136_SNP [dm3] X_11780103_SNP [dm6]	C	A	3.243e^-4	0.749	INTERGENIC
3R	12656937	3R_12656937_SNP [dm3] 3R_16831215_SNP [dm6]	A	T	3.260e^-4	0.75	EXON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
3L	10642762	3L_10642762_SNP [dm3] 3L_10649662_SNP [dm6]	A	T	3.268e^-4	0.75	INTRON CG32066	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10643303	3L_10643303_SNP [dm3] 3L_10650203_SNP [dm6]	A	T	3.268e^-4	0.75	INTRON CG32066
2L	1286199	2L_1286199_SNP [dm3] 2L_1286199_SNP [dm6]	T	C	3.276e^-4	0.75	SYNONYMOUS_CODING robo3	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	1651443	3R_1651443_SNP [dm3] 3R_5825721_SNP [dm6]	T	C	3.276e^-4	0.75	INTRON dgrn	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
X	8278938	X_8278938_SNP [dm3] X_8384905_SNP [dm6]	T	C	3.277e^-4	0.75	UPSTREAM CG1387 INTERGENIC
3R	1719287	3R_1719287_SNP [dm3] 3R_5893565_SNP [dm6]	T	A	3.279e^-4	0.75	INTRON CG34113
2L	18132236	2L_18132236_SNP [dm3] 2L_18132236_SNP [dm6]	T	C	3.288e^-4	0.751	SYNONYMOUS_CODING kel UTR_3_PRIME kel	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19444879	X_19444879_INS [dm3] X_19550846_INS [dm6]	G	GTCCGTCCGTATA...	3.293e^-4	0.752	UPSTREAM mir-972 & 2 others INTERGENIC
2R	7031929	2R_7031929_SNP [dm3] 2R_11144424_SNP [dm6]	A	T	3.299e^-4	0.752	UPSTREAM CG13229 INTRON CG13229	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12444406	2L_12444406_SNP [dm3] 2L_12444406_SNP [dm6]	C	T	3.301e^-4	0.752	UTR_5_PRIME Oatp33Ea	TF binding site BDTNP1_TFBS_da
3L	13545069	3L_13545069_SNP [dm3] 3L_13551969_SNP [dm6]	C	A	3.307e^-4	0.752	INTRON bru-3
3L	2818439	3L_2818439_SNP [dm3] 3L_2818439_SNP [dm6]	T	C	3.313e^-4	0.752	INTRON CG43444
3R	14785931	3R_14785931_DEL [dm3] 3R_18960209_DEL [dm6]	GCAA	G	3.315e^-4	0.752	INTRON CG42613 & 1 other
X	636011	X_636011_SNP [dm3] X_741978_SNP [dm6]	A	C	3.340e^-4	0.752	INTRON sdk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10238271	3R_10238271_SNP [dm3] 3R_14412549_SNP [dm6]	G	A	3.350e^-4	0.752	INTRON cv-c
3L	1412888	3L_1412888_SNP [dm3] 3L_1412888_SNP [dm6]	C	A	3.365e^-4	0.752	NON_SYNONYMOUS_CODING CG9168 INTRON Ptp61F
3L	1533490	3L_1533490_SNP [dm3] 3L_1533490_SNP [dm6]	T	A	3.368e^-4	0.752	SPLICE_SITE_REGION CG12090 INTRON CG12090	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	941009	3L_941009_SNP [dm3] 3L_941009_SNP [dm6]	T	C	3.383e^-4	0.752	INTRON Glut1
3R	1555513	3R_1555513_SNP [dm3] 3R_5729791_SNP [dm6]	G	T	3.394e^-4	0.752	INTERGENIC	regulatory region REDfly_CRMs
X	12352849	X_12352849_SNP [dm3] X_12458816_SNP [dm6]	A	G	3.395e^-4	0.752	DOWNSTREAM Rab40 INTERGENIC
3L	14563172	3L_14563172_SNP [dm3] 3L_14570072_SNP [dm6]	T	A	3.399e^-4	0.752	INTERGENIC
2L	7170563	2L_7170563_SNP [dm3] 2L_7170563_SNP [dm6]	G	C	3.399e^-4	0.752	INTERGENIC
3L	1534406	3L_1534406_SNP [dm3] 3L_1534406_SNP [dm6]	G	T	3.400e^-4	0.752	UPSTREAM CG12090 DOWNSTREAM CG12091 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20643576	3R_20643576_SNP [dm3] 3R_24817854_SNP [dm6]	A	T	3.407e^-4	0.752	SPLICE_SITE_REGION Saf-B UPSTREAM CG5808 INTRON Saf-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	23718762	3R_23718762_SNP [dm3] 3R_27893040_SNP [dm6]	G	A	3.415e^-4	0.752	INTRON CG34353
3L	8756269	3L_8756269_SNP [dm3] 3L_8763169_SNP [dm6]	C	A	3.422e^-4	0.752	INTRON Fhos
X	11670435	X_11670435_SNP [dm3] X_11776402_SNP [dm6]	A	T	3.426e^-4	0.752	INTRON dy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	11179812	X_11179812_SNP [dm3] X_11285779_SNP [dm6]	T	C	3.428e^-4	0.752	INTRON CG44422
3L	14898900	3L_14898900_SNP [dm3] 3L_14905800_SNP [dm6]	A	T	3.435e^-4	0.752	INTRON DCX-EMAP
2L	10277735	2L_10277735_SNP [dm3] 2L_10277735_SNP [dm6]	G	T	3.438e^-4	0.752	UPSTREAM Utx INTRON Utx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
X	614049	X_614049_SNP [dm3] X_720016_SNP [dm6]	G	C	3.442e^-4	0.752	INTRON sdk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	633504	X_633504_SNP [dm3] X_739471_SNP [dm6]	A	C	3.442e^-4	0.752	INTRON sdk
3R	25798095	3R_25798095_SNP [dm3] 3R_29972373_SNP [dm6]	C	T	3.447e^-4	0.752	INTERGENIC
X	12800902	X_12800902_SNP [dm3] X_12906869_SNP [dm6]	A	C	3.448e^-4	0.752	UPSTREAM CG4404 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Ubx
3L	17415798	3L_17415798_SNP [dm3] 3L_17422698_SNP [dm6]	C	T	3.448e^-4	0.752	NON_SYNONYMOUS_CODING Sec3
X	5249745	X_5249745_SNP [dm3] X_5355712_SNP [dm6]	G	C	3.453e^-4	0.752	INTRON SK
X	14991034	X_14991034_INS [dm3] X_15097001_INS [dm6]	T	TGTAT	3.466e^-4	0.752	UPSTREAM CG9072 INTRON Rab3-GEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13931560	2R_13931560_SNP [dm3] 2R_18044055_SNP [dm6]	A	T	3.466e^-4	0.752	UTR_3_PRIME CG5770 UPSTREAM CG5773
3R	15075076	3R_15075076_SNP [dm3] 3R_19249354_SNP [dm6]	C	T	3.469e^-4	0.752	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	4484884	3L_4484884_SNP [dm3] 3L_4484884_SNP [dm6]	A	G	3.471e^-4	0.752	DOWNSTREAM CG13722 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3L	10642470	3L_10642470_SNP [dm3] 3L_10649370_SNP [dm6]	C	T	3.475e^-4	0.752	INTRON CG32066
3L	10642498	3L_10642498_SNP [dm3] 3L_10649398_SNP [dm6]	G	A	3.475e^-4	0.752	INTRON CG32066
3R	16990897	3R_16990897_SNP [dm3] 3R_21165175_SNP [dm6]	T	C	3.475e^-4	0.752	UTR_3_PRIME Snmp1 DOWNSTREAM Snmp1 & 1 other INTRON SNF4Agamma
3L	10082785	3L_10082785_SNP [dm3] 3L_10089685_SNP [dm6]	A	G	3.476e^-4	0.752	UPSTREAM CG14160 DOWNSTREAM CG32053 INTRON dpr6
2L	279494	2L_279494_SNP [dm3] 2L_279494_SNP [dm6]	T	C	3.479e^-4	0.752	SYNONYMOUS_CODING smo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	279674	2L_279674_SNP [dm3] 2L_279674_SNP [dm6]	C	T	3.479e^-4	0.752	SYNONYMOUS_CODING smo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	16505460	3L_16505460_SNP [dm3] 3L_16512360_SNP [dm6]	C	T	3.484e^-4	0.752	INTRON CG43373
3L	14245925	3L_14245925_SNP [dm3] 3L_14252825_SNP [dm6]	T	C	3.486e^-4	0.752	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	2652979	3L_2652979_SNP [dm3] 3L_2652979_SNP [dm6]	A	C	3.487e^-4	0.752	NON_SYNONYMOUS_CODING Snup UTR_5_PRIME CG42304 UPSTREAM CG42304	TF binding site mE1_TFBS_cad
2R	11429602	2R_11429602_SNP [dm3] 2R_15542097_SNP [dm6]	C	T	3.490e^-4	0.752	SYNONYMOUS_CODING Vha36-1 UPSTREAM CG8187 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8947397	2L_8947397_SNP [dm3] 2L_8947397_SNP [dm6]	T	C	3.491e^-4	0.752	UPSTREAM C1GalTA INTRON C1GalTA	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7654978	2L_7654978_SNP [dm3] 2L_7654978_SNP [dm6]	T	A	3.494e^-4	0.752	INTRON Slob
X	16766155	X_16766155_SNP [dm3] X_16872122_SNP [dm6]	A	C	3.503e^-4	0.752	INTRON CG13003
2R	12149845	2R_12149845_SNP [dm3] 2R_16262340_SNP [dm6]	A	T	3.508e^-4	0.752	UTR_3_PRIME fidipidine
3R	11610689	3R_11610689_SNP [dm3] 3R_15784967_SNP [dm6]	C	G	3.517e^-4	0.752	INTERGENIC
3L	9872727	3L_9872727_SNP [dm3] 3L_9879627_SNP [dm6]	C	G	3.521e^-4	0.752	INTRON CG34382
3L	9872769	3L_9872769_DEL [dm3] 3L_9879669_DEL [dm6]	TTGTATT	GG	3.521e^-4	0.752	INTRON CG34382
3R	1669379	3R_1669379_SNP [dm3] 3R_5843657_SNP [dm6]	G	C	3.523e^-4	0.752	UPSTREAM CG1213 INTRON CG1213
X	12646171	X_12646171_SNP [dm3] X_12752138_SNP [dm6]	C	T	3.527e^-4	0.752	EXON CR44619	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	4263577	3L_4263577_SNP [dm3] 3L_4263577_SNP [dm6]	G	A	3.528e^-4	0.752	UPSTREAM CG1273 DOWNSTREAM VhaM9.7-a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	24160221	3L_24160221_SNP [dm3] 3L_24167121_SNP [dm6]	C	G	3.530e^-4	0.752	INTRON Snap25
3L	6633027	3L_6633027_SNP [dm3] 3L_6639927_SNP [dm6]	A	G	3.530e^-4	0.752	UPSTREAM CR45238 INTERGENIC
2L	6090135	2L_6090135_SNP [dm3] 2L_6090135_SNP [dm6]	A	G	3.534e^-4	0.752	INTRON Kr-h1	TF binding site BDTNP1_TFBS_z
3R	1709427	3R_1709427_SNP [dm3] 3R_5883705_SNP [dm6]	T	A	3.534e^-4	0.752	INTRON CG34113
X	2704955	X_2704955_SNP [dm3] X_2810922_SNP [dm6]	C	A	3.541e^-4	0.752	DOWNSTREAM CG12498 INTRON kirre
3R	26432474	3R_26432474_SNP [dm3] 3R_30606752_SNP [dm6]	A	G	3.556e^-4	0.752	SYNONYMOUS_CODING CG31016 DOWNSTREAM PH4alphaNE3
3L	12765727	3L_12765727_SNP [dm3] 3L_12772627_SNP [dm6]	G	A	3.558e^-4	0.752	INTRON Hip1
3R	15736695	3R_15736695_SNP [dm3] 3R_19910973_SNP [dm6]	A	G	3.559e^-4	0.752	SYNONYMOUS_CODING RhoGAP92B UTR_5_PRIME RhoGAP92B UPSTREAM CR45048
3L	4883924	3L_4883924_SNP [dm3] 3L_4883924_SNP [dm6]	G	T	3.561e^-4	0.752	INTRON CG17150	TF binding site mE1_TFBS_chinmo
2L	10277732	2L_10277732_SNP [dm3] 2L_10277732_SNP [dm6]	T	A	3.561e^-4	0.752	UPSTREAM Utx INTRON Utx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
X	631539	X_631539_SNP [dm3] X_737506_SNP [dm6]	C	G	3.565e^-4	0.752	SPLICE_SITE_REGION sdk INTRON sdk
3R	13951268	3R_13951268_SNP [dm3] 3R_18125546_SNP [dm6]	C	T	3.576e^-4	0.752	INTRON sr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3L	14060764	3L_14060764_SNP [dm3] 3L_14067664_SNP [dm6]	T	C	3.581e^-4	0.752	SYNONYMOUS_CODING CG32138
2R	17792354	2R_17792354_SNP [dm3] 2R_21904849_SNP [dm6]	C	T	3.592e^-4	0.752	INTRON Fili
3R	15373858	3R_15373858_SNP [dm3] 3R_19548136_SNP [dm6]	G	A	3.593e^-4	0.752	INTRON Dys
2R	17722290	2R_17722290_SNP [dm3] 2R_21834785_SNP [dm6]	A	C	3.594e^-4	0.752	DOWNSTREAM CG4377 INTRON CG4363
X	11676033	X_11676033_SNP [dm3] X_11782000_SNP [dm6]	C	T	3.600e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	17428292	3L_17428292_SNP [dm3] 3L_17435192_SNP [dm6]	G	T	3.603e^-4	0.752	SYNONYMOUS_CODING CG12229 INTRON CG32176	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	5044910	3L_5044910_SNP [dm3] 3L_5044910_SNP [dm6]	T	G	3.604e^-4	0.752	INTRON Con
3L	1706599	3L_1706599_SNP [dm3] 3L_1706599_SNP [dm6]	C	T	3.606e^-4	0.752	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4781901	3L_4781901_SNP [dm3] 3L_4781901_SNP [dm6]	A	C	3.606e^-4	0.752	INTRON RhoGEF64C
3L	12538768	3L_12538768_SNP [dm3] 3L_12545668_SNP [dm6]	T	A	3.607e^-4	0.752	INTRON sowah
3L	3781790	3L_3781790_SNP [dm3] 3L_3781790_SNP [dm6]	G	C	3.608e^-4	0.752	INTRON CG32264	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1656653	3R_1656653_SNP [dm3] 3R_5830931_SNP [dm6]	A	G	3.613e^-4	0.752	UPSTREAM CG1208 INTRON glob3
X	12354637	X_12354637_SNP [dm3] X_12460604_SNP [dm6]	G	T	3.629e^-4	0.752	INTRON Rab40
3L	566899	3L_566899_SNP [dm3] 3L_566899_SNP [dm6]	C	A	3.629e^-4	0.752	INTRON hipk	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	18217158	X_18217158_INS [dm3] X_18323125_INS [dm6]	A	ACGGATG	3.633e^-4	0.752	UTR_3_PRIME CG6123	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9231485	3R_9231485_SNP [dm3] 3R_13405763_SNP [dm6]	G	T	3.639e^-4	0.752	SYNONYMOUS_CODING yellow-e2 UPSTREAM yellow-e3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18022067	X_18022067_SNP [dm3] X_18128034_SNP [dm6]	G	C	3.651e^-4	0.752	UPSTREAM mir-210 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	632694	X_632694_SNP [dm3] X_738661_SNP [dm6]	C	G	3.653e^-4	0.752	INTRON sdk
3R	22436541	3R_22436541_SNP [dm3] 3R_26610819_SNP [dm6]	G	C	3.665e^-4	0.752	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	639834	X_639834_SNP [dm3] X_745801_SNP [dm6]	A	G	3.670e^-4	0.752	INTRON sdk
3R	1741466	3R_1741466_SNP [dm3] 3R_5915744_SNP [dm6]	A	G	3.673e^-4	0.752	INTRON CG34113
3L	18763201	3L_18763201_SNP [dm3] 3L_18770101_SNP [dm6]	G	A	3.686e^-4	0.752	INTRON ftz-f1
3L	4484820	3L_4484820_DEL [dm3] 3L_4484820_DEL [dm6]	GAC	G	3.691e^-4	0.752	DOWNSTREAM CG13722 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3L	14563210	3L_14563210_SNP [dm3] 3L_14570110_SNP [dm6]	G	T	3.691e^-4	0.752	INTERGENIC
3L	9960641	3L_9960641_SNP [dm3] 3L_9967541_SNP [dm6]	A	G	3.700e^-4	0.752	SYNONYMOUS_CODING CG6685 UPSTREAM Nc DOWNSTREAM CG34356	TF binding site mE1_TFBS_cad
3R	21914392	3R_21914392_SNP [dm3] 3R_26088670_SNP [dm6]	G	T	3.707e^-4	0.752	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	7879515	X_7879515_SNP [dm3] X_7985482_SNP [dm6]	G	A	3.707e^-4	0.752	SYNONYMOUS_CODING sn
3L	13139566	3L_13139566_SNP [dm3] 3L_13146466_SNP [dm6]	A	C	3.715e^-4	0.752	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4764020	3L_4764020_SNP [dm3] 3L_4764020_SNP [dm6]	A	C	3.715e^-4	0.752	INTRON RhoGEF64C
3L	4764371	3L_4764371_SNP [dm3] 3L_4764371_SNP [dm6]	C	T	3.715e^-4	0.752	INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
3L	4764395	3L_4764395_SNP [dm3] 3L_4764395_SNP [dm6]	C	T	3.715e^-4	0.752	INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
3L	4764402	3L_4764402_SNP [dm3] 3L_4764402_SNP [dm6]	G	C	3.715e^-4	0.752	INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
3L	4764407	3L_4764407_SNP [dm3] 3L_4764407_SNP [dm6]	G	C	3.715e^-4	0.752	INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
3L	4764411	3L_4764411_SNP [dm3] 3L_4764411_SNP [dm6]	G	A	3.715e^-4	0.752	INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
3L	4764629	3L_4764629_SNP [dm3] 3L_4764629_SNP [dm6]	A	T	3.715e^-4	0.752	SPLICE_SITE_REGION RhoGEF64C INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
2L	17770396	2L_17770396_SNP [dm3] 2L_17770396_SNP [dm6]	C	T	3.715e^-4	0.752	INTRON CadN
3R	6856418	3R_6856418_DEL [dm3] 3R_11030696_DEL [dm6]	CT	C	3.718e^-4	0.752	INTRON CG34114
3L	9872786	3L_9872786_SNP [dm3] 3L_9879686_SNP [dm6]	C	T	3.725e^-4	0.752	INTRON CG34382
3R	20640996	3R_20640996_SNP [dm3] 3R_24815274_SNP [dm6]	G	T	3.725e^-4	0.752	DOWNSTREAM CG34150 INTRON CG5808	TF binding site mE1_TFBS_cad
3L	1706808	3L_1706808_SNP [dm3] 3L_1706808_SNP [dm6]	C	T	3.734e^-4	0.752	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12354748	X_12354748_SNP [dm3] X_12460715_SNP [dm6]	A	G	3.738e^-4	0.752	INTRON Rab40
X	12354754	X_12354754_SNP [dm3] X_12460721_SNP [dm6]	G	A	3.738e^-4	0.752	INTRON Rab40
X	12354758	X_12354758_SNP [dm3] X_12460725_SNP [dm6]	C	T	3.738e^-4	0.752	INTRON Rab40
X	12354761	X_12354761_SNP [dm3] X_12460728_SNP [dm6]	C	T	3.738e^-4	0.752	INTRON Rab40
3L	8742928	3L_8742928_SNP [dm3] 3L_8749828_SNP [dm6]	C	A	3.740e^-4	0.752	UPSTREAM CG13306 INTERGENIC
3L	14898894	3L_14898894_SNP [dm3] 3L_14905794_SNP [dm6]	A	T	3.740e^-4	0.752	INTRON DCX-EMAP
X	20785168	X_20785168_SNP [dm3] X_20914141_SNP [dm6]	A	T	3.741e^-4	0.752	INTRON shakB
2L	13328551	2L_13328551_SNP [dm3] 2L_13328551_SNP [dm6]	T	G	3.751e^-4	0.753	INTRON CG43778
3L	4263152	3L_4263152_SNP [dm3] 3L_4263152_SNP [dm6]	A	G	3.760e^-4	0.754	UTR_3_PRIME VhaM9.7-a UPSTREAM CG11586 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19159379	X_19159379_SNP [dm3] X_19265346_SNP [dm6]	G	T	3.777e^-4	0.756	INTRON Vav	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	2986108	3R_2986108_SNP [dm3] 3R_7160386_SNP [dm6]	C	A	3.784e^-4	0.756	INTERGENIC
3R	20960097	3R_20960097_SNP [dm3] 3R_25134375_SNP [dm6]	G	C	3.791e^-4	0.756	SYNONYMOUS_CODING Bili
3R	24437366	3R_24437366_SNP [dm3] 3R_28611644_SNP [dm6]	G	A	3.792e^-4	0.756	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12820052	X_12820052_SNP [dm3] X_12926019_SNP [dm6]	A	C	3.798e^-4	0.756	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8626774	X_8626774_SNP [dm3] X_8732741_SNP [dm6]	C	T	3.801e^-4	0.756	INTERGENIC
3L	8757200	3L_8757200_SNP [dm3] 3L_8764100_SNP [dm6]	G	A	3.802e^-4	0.756	INTRON Fhos
3L	7139832	3L_7139832_SNP [dm3] 3L_7146732_SNP [dm6]	C	T	3.813e^-4	0.757	SYNONYMOUS_CODING corn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3312931	2L_3312931_SNP [dm3] 2L_3312931_SNP [dm6]	G	A	3.830e^-4	0.757	INTRON CG3277
3R	18677908	3R_18677908_SNP [dm3] 3R_22852186_SNP [dm6]	C	T	3.832e^-4	0.757	UPSTREAM CR43846 INTERGENIC
2R	4201796	2R_4201796_SNP [dm3] 2R_8314291_SNP [dm6]	C	G	3.840e^-4	0.757	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	20785062	X_20785062_SNP [dm3] X_20914035_SNP [dm6]	T	A	3.841e^-4	0.757	INTRON shakB
2L	19558076	2L_19558076_SNP [dm3] 2L_19558076_SNP [dm6]	T	G	3.850e^-4	0.757	SYNONYMOUS_CODING Tep5
3R	25321947	3R_25321947_SNP [dm3] 3R_29496225_SNP [dm6]	T	C	3.855e^-4	0.757	UPSTREAM CG2010 INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1534571	3L_1534571_SNP [dm3] 3L_1534571_SNP [dm6]	T	C	3.855e^-4	0.757	UPSTREAM CG12090 DOWNSTREAM CG12091 INTERGENIC
2R	5222747	2R_5222747_SNP [dm3] 2R_9335242_SNP [dm6]	T	A	3.859e^-4	0.757	INTRON CG13954 & 1 other	TF binding site mE1_TFBS_HSA
3R	13482536	3R_13482536_SNP [dm3] 3R_17656814_SNP [dm6]	G	A	3.869e^-4	0.757	UPSTREAM tRNA:CR31577 INTRON CG14322
X	12355006	X_12355006_SNP [dm3] X_12460973_SNP [dm6]	A	G	3.881e^-4	0.757	INTRON Rab40
3R	21914480	3R_21914480_SNP [dm3] 3R_26088758_SNP [dm6]	A	T	3.890e^-4	0.757	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	23717203	3R_23717203_SNP [dm3] 3R_27891481_SNP [dm6]	C	A	3.891e^-4	0.757	INTRON CG34353
3L	14563206	3L_14563206_SNP [dm3] 3L_14570106_SNP [dm6]	C	A	3.893e^-4	0.757	INTERGENIC
3L	1627764	3L_1627764_SNP [dm3] 3L_1627764_SNP [dm6]	T	C	3.895e^-4	0.757	SYNONYMOUS_CODING CG13928 INTRON GC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12152039	2R_12152039_SNP [dm3] 2R_16264534_SNP [dm6]	A	G	3.896e^-4	0.757	UTR_5_PRIME fidipidine UPSTREAM csul	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	16204805	X_16204805_SNP [dm3] X_16310772_SNP [dm6]	T	C	3.904e^-4	0.757	SYNONYMOUS_CODING CG9915
3R	1604202	3R_1604202_SNP [dm3] 3R_5778480_SNP [dm6]	C	G	3.904e^-4	0.757	UPSTREAM CG2082 & 1 other INTRON CG2082	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	1604203	3R_1604203_SNP [dm3] 3R_5778481_SNP [dm6]	G	A	3.904e^-4	0.757	UPSTREAM CG2082 & 1 other INTRON CG2082	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8762580	3L_8762580_SNP [dm3] 3L_8769480_SNP [dm6]	A	G	3.910e^-4	0.757	INTRON Fhos
2R	18024417	2R_18024417_SNP [dm3] 2R_22136912_SNP [dm6]	T	C	3.916e^-4	0.757	UPSTREAM a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4484989	3L_4484989_SNP [dm3] 3L_4484989_SNP [dm6]	A	G	3.924e^-4	0.757	DOWNSTREAM CG13722 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3R	1582749	3R_1582749_SNP [dm3] 3R_5757027_SNP [dm6]	G	A	3.928e^-4	0.757	SYNONYMOUS_CODING Sec8
3R	1597680	3R_1597680_SNP [dm3] 3R_5771958_SNP [dm6]	T	G	3.928e^-4	0.757	UPSTREAM CG2082 INTRON CG2082	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	1608517	3R_1608517_SNP [dm3] 3R_5782795_SNP [dm6]	C	T	3.928e^-4	0.757	UPSTREAM kat-60L1 INTRON kat-60L1	TF binding site mE1_TFBS_HSA
3R	1627692	3R_1627692_SNP [dm3] 3R_5801970_SNP [dm6]	G	C	3.928e^-4	0.757	UPSTREAM CG11000 INTERGENIC
2L	3381249	2L_3381249_SNP [dm3] 2L_3381249_SNP [dm6]	A	T	3.931e^-4	0.757	INTERGENIC
2L	17636341	2L_17636341_SNP [dm3] 2L_17636341_SNP [dm6]	C	T	3.933e^-4	0.757	INTERGENIC
3R	22878773	3R_22878773_DEL [dm3] 3R_27053051_DEL [dm6]	GACATCGGTTG...	G	3.934e^-4	0.757	INTRON RYa-R
3L	6559252	3L_6559252_SNP [dm3] 3L_6566152_SNP [dm6]	T	C	3.934e^-4	0.757	NON_SYNONYMOUS_CODING jv INTRON CG18769	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23465725	3R_23465725_SNP [dm3] 3R_27640003_SNP [dm6]	C	T	3.937e^-4	0.757	UTR_3_PRIME tau DOWNSTREAM Mtl & 1 other
3R	11476870	3R_11476870_SNP [dm3] 3R_15651148_SNP [dm6]	A	T	3.938e^-4	0.757	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	17192910	3L_17192910_SNP [dm3] 3L_17199810_SNP [dm6]	T	C	3.939e^-4	0.757	INTRON Rbp6
3L	3624375	3L_3624375_SNP [dm3] 3L_3624375_SNP [dm6]	A	T	3.950e^-4	0.757	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	11137045	3R_11137045_SNP [dm3] 3R_15311323_SNP [dm6]	T	G	3.951e^-4	0.757	UPSTREAM Tm2 INTRON Tm2	regulatory region REDfly_CRMs
3R	1604481	3R_1604481_SNP [dm3] 3R_5778759_SNP [dm6]	T	C	3.953e^-4	0.757	UPSTREAM CG2082 & 1 other INTRON CG2082	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	18024186	X_18024186_SNP [dm3] X_18130153_SNP [dm6]	A	G	3.964e^-4	0.757	UTR_5_PRIME CG43133 DOWNSTREAM ari-1
2L	7188766	2L_7188766_SNP [dm3] 2L_7188766_SNP [dm6]	C	A	3.967e^-4	0.757	UPSTREAM CG4496 INTRON CG4496	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6320361	3L_6320361_SNP [dm3] 3L_6327261_SNP [dm6]	G	T	3.972e^-4	0.757	UPSTREAM Or65c DOWNSTREAM Or65b INTERGENIC
2R	19082581	2R_19082581_SNP [dm3] 2R_23195058_SNP [dm6]	G	A	3.973e^-4	0.757	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1739096	3R_1739096_SNP [dm3] 3R_5913374_SNP [dm6]	C	T	3.973e^-4	0.757	INTRON CG34113
3R	10358753	3R_10358753_INS [dm3] 3R_14533031_INS [dm6]	T	TTGCAT	3.979e^-4	0.757	INTRON Pde6
3R	20878183	3R_20878183_SNP [dm3] 3R_25052461_SNP [dm6]	A	C	3.981e^-4	0.757	DOWNSTREAM CG31109 INTRON CG11791	TF binding site mE1_TFBS_HSA
3L	4795875	3L_4795875_SNP [dm3] 3L_4795875_SNP [dm6]	A	C	3.991e^-4	0.758	SYNONYMOUS_CODING RhoGEF64C
3R	11220083	3R_11220083_SNP [dm3] 3R_15394361_SNP [dm6]	C	T	3.991e^-4	0.758	INTRON Rbp
2L	7654888	2L_7654888_SNP [dm3] 2L_7654888_SNP [dm6]	A	G	4.001e^-4	0.759	INTRON Slob
3L	11477889	3L_11477889_SNP [dm3] 3L_11484789_SNP [dm6]	T	A	4.007e^-4	0.759	INTERGENIC
3L	1628384	3L_1628384_SNP [dm3] 3L_1628384_SNP [dm6]	A	G	4.037e^-4	0.764	UPSTREAM CG13928 INTRON GC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	14096416	2L_14096416_SNP [dm3] 2L_14096416_SNP [dm6]	A	T	4.050e^-4	0.764	INTERGENIC
3R	15191400	3R_15191400_SNP [dm3] 3R_19365678_SNP [dm6]	T	A	4.050e^-4	0.764	INTERGENIC
2L	11183983	2L_11183983_SNP [dm3] 2L_11183983_SNP [dm6]	G	A	4.051e^-4	0.764	INTRON Ca-beta
X	10087906	X_10087906_SNP [dm3] X_10193873_SNP [dm6]	T	A	4.066e^-4	0.766	UTR_3_PRIME CG43902 INTRON CR44894
3L	6369156	3L_6369156_SNP [dm3] 3L_6376056_SNP [dm6]	C	T	4.080e^-4	0.768	INTERGENIC
2R	20330629	2R_20330629_SNP [dm3] 2R_24443106_SNP [dm6]	C	T	4.083e^-4	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	22082893	3R_22082893_SNP [dm3] 3R_26257171_SNP [dm6]	A	C	4.089e^-4	0.768	INTRON Ald	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	23969712	3L_23969712_SNP [dm3] 3L_23976612_SNP [dm6]	T	C	4.096e^-4	0.768	INTRON CG40470
X	10485547	X_10485547_SNP [dm3] X_10591514_SNP [dm6]	C	G	4.101e^-4	0.768	INTRON Hmr
3R	14337755	3R_14337755_SNP [dm3] 3R_18512033_SNP [dm6]	C	A	4.104e^-4	0.768	INTRON fru
2L	11307716	2L_11307716_DEL [dm3] 2L_11307716_DEL [dm6]	AAA	A	4.107e^-4	0.768	UPSTREAM CR43721 INTERGENIC
2L	3376460	2L_3376460_SNP [dm3] 2L_3376460_SNP [dm6]	T	G	4.108e^-4	0.768	UPSTREAM CG15412 & 1 other INTRON CG9662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2R	1567441	2R_1567441_SNP [dm3] 2R_5679936_SNP [dm6]	C	T	4.115e^-4	0.769	SYNONYMOUS_CODING scaf	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	26310957	3R_26310957_SNP [dm3] 3R_30485235_SNP [dm6]	T	C	4.120e^-4	0.769	SYNONYMOUS_CODING PH4alphaEFB
3R	13038753	3R_13038753_SNP [dm3] 3R_17213031_SNP [dm6]	A	C	4.130e^-4	0.769	INTERGENIC
X	12820000	X_12820000_MNP [dm3] X_12925967_MNP [dm6]	GGT	AAA	4.143e^-4	0.769	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	12820004	X_12820004_SNP [dm3] X_12925971_SNP [dm6]	T	G	4.143e^-4	0.769	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl

By genomic position
Variant impact
Gene name

Microbiota_OTU068 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results