DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.165e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.002694

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	6.0453	0.0487

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2957 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	5143766	X_5143766_SNP [dm3] X_5249733_SNP [dm6]	G	T	2.948e^-9	0.005	INTRON CG15465 & 1 other
3R	23522392	3R_23522392_SNP [dm3] 3R_27696670_SNP [dm6]	G	A	9.744e^-9	0.006	UTR_3_PRIME ALiX DOWNSTREAM CG43320
3R	25147951	3R_25147951_SNP [dm3] 3R_29322229_SNP [dm6]	G	T	1.169e^-8	0.006	INTERGENIC
3R	23522336	3R_23522336_SNP [dm3] 3R_27696614_SNP [dm6]	C	T	1.312e^-8	0.006	UTR_3_PRIME ALiX DOWNSTREAM CG43320
X	21205575	X_21205575_SNP [dm3] X_21334548_SNP [dm6]	C	A	3.087e^-8	0.009	INTRON tty
X	21205542	X_21205542_SNP [dm3] X_21334515_SNP [dm6]	C	T	3.105e^-8	0.009	INTRON tty
3R	13915897	3R_13915897_DEL [dm3] 3R_18090175_DEL [dm6]	TTCT	T	3.401e^-8	0.009	UPSTREAM sr INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8701623	3L_8701623_SNP [dm3] 3L_8708523_SNP [dm6]	A	G	4.022e^-8	0.009	INTERGENIC	regulatory region REDfly_CRMs
3R	19530992	3R_19530992_SNP [dm3] 3R_23705270_SNP [dm6]	G	A	5.383e^-8	0.009	DOWNSTREAM CG31413 INTRON CG31414	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	19531011	3R_19531011_SNP [dm3] 3R_23705289_SNP [dm6]	T	C	5.383e^-8	0.009	DOWNSTREAM CG31413 INTRON CG31414	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	21867866	X_21867866_SNP [dm3] X_22466030_SNP [dm6]	T	C	5.411e^-8	0.009	UPSTREAM CG14619 INTRON CG14619
3R	25147954	3R_25147954_SNP [dm3] 3R_29322232_SNP [dm6]	C	A	6.643e^-8	0.01	INTERGENIC
X	20689714	X_20689714_SNP [dm3] X_20818687_SNP [dm6]	C	A	7.157e^-8	0.01	INTRON shakB
X	17006816	X_17006816_SNP [dm3] X_17112783_SNP [dm6]	A	T	1.030e^-7	0.013	INTRON CG5004	TF binding site BDTNP1_TFBS_twi
X	21205728	X_21205728_SNP [dm3] X_21334701_SNP [dm6]	G	A	1.142e^-7	0.013	INTRON tty
X	21205735	X_21205735_SNP [dm3] X_21334708_SNP [dm6]	T	A	1.142e^-7	0.013	INTRON tty
3R	21980529	3R_21980529_SNP [dm3] 3R_26154807_SNP [dm6]	C	T	1.331e^-7	0.013	INTERGENIC
X	12402257	X_12402257_SNP [dm3] X_12508224_SNP [dm6]	A	G	1.332e^-7	0.013	INTRON CG2556	TF binding site BDTNP1_TFBS_da
3R	23081744	3R_23081744_SNP [dm3] 3R_27256022_SNP [dm6]	C	T	1.342e^-7	0.013	DOWNSTREAM woc INTRON TfIIA-L	TF binding site BDTNP1_TFBS_z
3L	12032724	3L_12032724_SNP [dm3] 3L_12039624_SNP [dm6]	T	C	1.489e^-7	0.014	INTRON rols	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16985273	X_16985273_DEL [dm3] X_17091240_DEL [dm6]	CTA	C	1.960e^-7	0.017	UPSTREAM CG16700 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14309178	3R_14309178_SNP [dm3] 3R_18483456_SNP [dm6]	C	T	2.599e^-7	0.022	INTRON fru
X	21205205	X_21205205_SNP [dm3] X_21334178_SNP [dm6]	G	A	3.669e^-7	0.027	INTRON tty	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5145629	X_5145629_INS [dm3] X_5251596_INS [dm6]	C	CGC	3.859e^-7	0.027	UTR_3_PRIME CG15465 & 1 other DOWNSTREAM rg
X	8781242	X_8781242_SNP [dm3] X_8887209_SNP [dm6]	G	A	3.975e^-7	0.027	INTRON Moe	TF binding site BDTNP1_TFBS_dl
X	17016398	X_17016398_SNP [dm3] X_17122365_SNP [dm6]	C	A	4.048e^-7	0.027	INTRON CG5004	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10826558	3L_10826558_SNP [dm3] 3L_10833458_SNP [dm6]	A	G	4.149e^-7	0.027	INTERGENIC
3R	21189594	3R_21189594_SNP [dm3] 3R_25363872_SNP [dm6]	T	A	4.240e^-7	0.027	INTRON Fur1
2R	14801302	2R_14801302_INS [dm3] 2R_18913797_INS [dm6]	T	TCGTTT	4.357e^-7	0.027	INTRON sano
3R	10139170	3R_10139170_SNP [dm3] 3R_14313448_SNP [dm6]	G	A	4.363e^-7	0.027	INTRON CG31321
3L	10827443	3L_10827443_INS [dm3] 3L_10834343_INS [dm6]	C	CTA	4.433e^-7	0.027	INTERGENIC
3L	12032949	3L_12032949_SNP [dm3] 3L_12039849_SNP [dm6]	C	T	4.775e^-7	0.028	INTRON rols	TF binding site mE1_TFBS_inv
3L	10823837	3L_10823837_SNP [dm3] 3L_10830737_SNP [dm6]	A	T	5.236e^-7	0.03	INTERGENIC
3L	10378149	3L_10378149_SNP [dm3] 3L_10385049_SNP [dm6]	C	T	6.706e^-7	0.036	INTERGENIC
X	21203559	X_21203559_SNP [dm3] X_21332532_SNP [dm6]	G	A	6.741e^-7	0.036	DOWNSTREAM tty INTRON tty	transposable element FlyBase
3L	10826598	3L_10826598_SNP [dm3] 3L_10833498_SNP [dm6]	T	A	6.972e^-7	0.036	INTERGENIC
3R	21980745	3R_21980745_SNP [dm3] 3R_26155023_SNP [dm6]	G	C	7.796e^-7	0.039	INTERGENIC
3L	12263187	3L_12263187_SNP [dm3] 3L_12270087_SNP [dm6]	A	T	8.074e^-7	0.039	UTR_3_PRIME Pbgs DOWNSTREAM CG32100
2L	16963413	2L_16963413_SNP [dm3] 2L_16963413_SNP [dm6]	G	C	8.275e^-7	0.039	INTERGENIC
3R	24495726	3R_24495726_SNP [dm3] 3R_28670004_SNP [dm6]	C	T	9.081e^-7	0.042	SYNONYMOUS_CODING CG33346 UPSTREAM CG9989
3L	4684942	3L_4684942_SNP [dm3] 3L_4684942_SNP [dm6]	C	G	9.824e^-7	0.043	INTRON axo
3R	26789545	3R_26789545_SNP [dm3] 3R_30963823_SNP [dm6]	A	C	9.862e^-7	0.043	SYNONYMOUS_CODING Ctr1C
3L	10378368	3L_10378368_SNP [dm3] 3L_10385268_SNP [dm6]	G	A	1.004e^-6	0.043	INTERGENIC
2R	3895822	2R_3895822_SNP [dm3] 2R_8008317_SNP [dm6]	A	G	1.151e^-6	0.049	DOWNSTREAM CG14762 INTRON Odc2	TF binding site mE1_TFBS_cad
2L	1346974	2L_1346974_INS [dm3] 2L_1346974_INS [dm6]	G	GAGACACG	1.230e^-6	0.049	UPSTREAM CR45006 INTERGENIC
3L	8701631	3L_8701631_SNP [dm3] 3L_8708531_SNP [dm6]	G	A	1.248e^-6	0.049	INTERGENIC	regulatory region REDfly_CRMs
3L	1440619	3L_1440619_SNP [dm3] 3L_1440619_SNP [dm6]	T	C	1.263e^-6	0.049	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10823747	3L_10823747_SNP [dm3] 3L_10830647_SNP [dm6]	C	G	1.288e^-6	0.049	INTERGENIC
3L	10823749	3L_10823749_SNP [dm3] 3L_10830649_SNP [dm6]	A	G	1.288e^-6	0.049	INTERGENIC
3L	1440587	3L_1440587_SNP [dm3] 3L_1440587_SNP [dm6]	C	G	1.320e^-6	0.049	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21980522	3R_21980522_SNP [dm3] 3R_26154800_SNP [dm6]	A	T	1.361e^-6	0.049	INTERGENIC
X	16993590	X_16993590_DEL [dm3] X_17099557_DEL [dm6]	GG	G	1.382e^-6	0.049	INTRON CG4991
X	21461411	X_21461411_SNP [dm3] X_21590384_SNP [dm6]	G	A	1.413e^-6	0.049	INTERGENIC
3L	1444377	3L_1444377_SNP [dm3] 3L_1444377_SNP [dm6]	C	A	1.454e^-6	0.049	INTRON Ptp61F	TF binding site mE1_TFBS_sens
2L	2332995	2L_2332995_SNP [dm3] 2L_2332995_SNP [dm6]	T	G	1.466e^-6	0.049	INTRON CG9967 & 1 other
3R	24658738	3R_24658738_SNP [dm3] 3R_28833016_SNP [dm6]	A	G	1.470e^-6	0.049	UTR_3_PRIME Apc UPSTREAM WASp
3L	1444406	3L_1444406_SNP [dm3] 3L_1444406_SNP [dm6]	C	T	1.653e^-6	0.054	INTRON Ptp61F	TF binding site mE1_TFBS_sens
X	5996137	X_5996137_SNP [dm3] X_6102104_SNP [dm6]	C	G	1.690e^-6	0.054	SYNONYMOUS_CODING Nep1	TF binding site mE1_TFBS_chinmo
2L	17214212	2L_17214212_SNP [dm3] 2L_17214212_SNP [dm6]	A	T	1.749e^-6	0.054	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21205388	X_21205388_SNP [dm3] X_21334361_SNP [dm6]	A	T	1.753e^-6	0.054	INTRON tty	TF binding site mE1_TFBS_cad
X	2436390	X_2436390_SNP [dm3] X_2542357_SNP [dm6]	G	A	1.884e^-6	0.057	INTRON trol	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	9302746	3L_9302746_SNP [dm3] 3L_9309646_SNP [dm6]	T	C	1.907e^-6	0.057	INTERGENIC
X	5145585	X_5145585_SNP [dm3] X_5251552_SNP [dm6]	C	T	1.985e^-6	0.058	UTR_3_PRIME CG15465 & 1 other DOWNSTREAM rg
X	4427889	X_4427889_SNP [dm3] X_4533856_SNP [dm6]	A	G	2.011e^-6	0.058	UTR_3_PRIME CG3556 DOWNSTREAM CG3556 INTRON CR32773
3L	7746389	3L_7746389_SNP [dm3] 3L_7753289_SNP [dm6]	A	T	2.094e^-6	0.06	INTRON CG32373
3R	23629995	3R_23629995_SNP [dm3] 3R_27804273_SNP [dm6]	G	C	2.197e^-6	0.062	INTRON CG34353
3L	1438367	3L_1438367_SNP [dm3] 3L_1438367_SNP [dm6]	C	T	2.277e^-6	0.063	UPSTREAM SA-2 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
3L	1078027	3L_1078027_SNP [dm3] 3L_1078027_SNP [dm6]	G	A	2.359e^-6	0.065	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2389985	3L_2389985_SNP [dm3] 3L_2389985_SNP [dm6]	C	A	2.496e^-6	0.065	SYNONYMOUS_CODING CG32299 UTR_3_PRIME CG32298 DOWNSTREAM CG42787 INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2809724	3L_2809724_INS [dm3] 3L_2809724_INS [dm6]	A	AAAGA	2.496e^-6	0.065	INTRON CG43444	TF binding site mE1_TFBS_cad
3L	1438368	3L_1438368_SNP [dm3] 3L_1438368_SNP [dm6]	C	T	2.515e^-6	0.065	UPSTREAM SA-2 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
3R	14024155	3R_14024155_SNP [dm3] 3R_18198433_SNP [dm6]	T	C	2.520e^-6	0.065	INTRON Ssdp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10825992	3L_10825992_SNP [dm3] 3L_10832892_SNP [dm6]	C	T	2.561e^-6	0.065	INTERGENIC
3L	10828632	3L_10828632_SNP [dm3] 3L_10835532_SNP [dm6]	G	A	2.676e^-6	0.066	INTERGENIC
X	21093246	X_21093246_SNP [dm3] X_21222219_SNP [dm6]	T	G	2.703e^-6	0.066	INTRON CG32521
3L	2390024	3L_2390024_SNP [dm3] 3L_2390024_SNP [dm6]	G	A	2.737e^-6	0.066	SYNONYMOUS_CODING CG32299 UTR_3_PRIME CG32298 DOWNSTREAM CG42787 INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2390083	3L_2390083_SNP [dm3] 3L_2390083_SNP [dm6]	T	G	2.737e^-6	0.066	NON_SYNONYMOUS_CODING CG32299 UTR_3_PRIME CG32298 DOWNSTREAM CG42787 INTRON CG45186	TF binding site mE1_TFBS_sens
X	21203952	X_21203952_SNP [dm3] X_21332925_SNP [dm6]	T	C	2.906e^-6	0.069	DOWNSTREAM tty INTRON tty	TF binding site mE1_TFBS_cad
3L	2477290	3L_2477290_SNP [dm3] 3L_2477290_SNP [dm6]	G	A	2.954e^-6	0.07	SYNONYMOUS_CODING Cyp4d20 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3896164	2R_3896164_SNP [dm3] 2R_8008659_SNP [dm6]	G	A	3.076e^-6	0.07	DOWNSTREAM CG14762 INTRON Odc2	TF binding site mE1_TFBS_cad
3L	4807267	3L_4807267_SNP [dm3] 3L_4807267_SNP [dm6]	T	G	3.080e^-6	0.07	NON_SYNONYMOUS_CODING CG18808 DOWNSTREAM Dhc64C
X	5145625	X_5145625_SNP [dm3] X_5251592_SNP [dm6]	A	C	3.153e^-6	0.07	UTR_3_PRIME CG15465 & 1 other DOWNSTREAM rg
X	21093211	X_21093211_SNP [dm3] X_21222184_SNP [dm6]	G	A	3.180e^-6	0.07	INTRON CG32521
X	16979309	X_16979309_SNP [dm3] X_17085276_SNP [dm6]	A	G	3.181e^-6	0.07	SYNONYMOUS_CODING CG8945
3R	24650791	3R_24650791_INS [dm3] 3R_28825069_INS [dm6]	A	AA	3.265e^-6	0.071	UTR_3_PRIME WASp DOWNSTREAM CG1647
3R	21189772	3R_21189772_SNP [dm3] 3R_25364050_SNP [dm6]	A	T	3.327e^-6	0.072	INTRON Fur1
3R	24706749	3R_24706749_SNP [dm3] 3R_28881027_SNP [dm6]	G	A	3.405e^-6	0.073	SYNONYMOUS_CODING CG14527 UPSTREAM CG14523 INTRON CG33203
2R	20299587	2R_20299587_SNP [dm3] 2R_24412064_SNP [dm6]	C	T	3.823e^-6	0.08	SYNONYMOUS_CODING CG45068 UTR_5_PRIME CG45069 UPSTREAM SerT	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	7631063	2L_7631063_SNP [dm3] 2L_7631063_SNP [dm6]	T	C	3.832e^-6	0.08	INTERGENIC
3L	4684945	3L_4684945_SNP [dm3] 3L_4684945_SNP [dm6]	C	A	3.914e^-6	0.08	INTRON axo
X	4427892	X_4427892_SNP [dm3] X_4533859_SNP [dm6]	A	T	3.929e^-6	0.08	UTR_3_PRIME CG3556 DOWNSTREAM CG3556 INTRON CR32773
3L	1443549	3L_1443549_SNP [dm3] 3L_1443549_SNP [dm6]	T	C	4.013e^-6	0.081	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	7950202	3R_7950202_SNP [dm3] 3R_12124480_SNP [dm6]	C	G	4.144e^-6	0.083	INTRON CG4702	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	21201017	X_21201017_INS [dm3] X_21329990_INS [dm6]	A	AA	4.368e^-6	0.086	UTR_3_PRIME tty	TF binding site BDTNP1_TFBS_prd
3L	4830511	3L_4830511_SNP [dm3] 3L_4830511_SNP [dm6]	G	A	4.405e^-6	0.086	SYNONYMOUS_CODING CG13708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13420389	3L_13420389_SNP [dm3] 3L_13427289_SNP [dm6]	G	T	4.561e^-6	0.087	UPSTREAM CG14105 INTERGENIC
X	16997599	X_16997599_SNP [dm3] X_17103566_SNP [dm6]	C	T	4.607e^-6	0.087	SYNONYMOUS_CODING CG4991
X	16999025	X_16999025_SNP [dm3] X_17104992_SNP [dm6]	A	G	4.607e^-6	0.087	DOWNSTREAM CG4991 INTRON Arpc3B
X	8282358	X_8282358_INS [dm3] X_8388325_INS [dm6]	A	AATCGCA	4.669e^-6	0.088		TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16979108	X_16979108_SNP [dm3] X_17085075_SNP [dm6]	T	A	4.714e^-6	0.088	SYNONYMOUS_CODING CG8945
X	16999024	X_16999024_SNP [dm3] X_17104991_SNP [dm6]	G	C	4.769e^-6	0.088	DOWNSTREAM CG4991 INTRON Arpc3B
X	21093757	X_21093757_SNP [dm3] X_21222730_SNP [dm6]	C	G	5.034e^-6	0.091	INTRON CG32521
X	16862569	X_16862569_SNP [dm3] X_16968536_SNP [dm6]	G	C	5.048e^-6	0.091	UTR_5_PRIME CG9086 DOWNSTREAM CG45002	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11373941	3R_11373941_INS [dm3] 3R_15548219_INS [dm6]	G	GCG	5.115e^-6	0.091	UPSTREAM CG6045 DOWNSTREAM CG18516 INTERGENIC	TF binding site mE1_TFBS_cnc
3R	14024436	3R_14024436_SNP [dm3] 3R_18198714_SNP [dm6]	T	C	5.174e^-6	0.091	UTR_5_PRIME Ssdp INTRON Ssdp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	14024489	3R_14024489_SNP [dm3] 3R_18198767_SNP [dm6]	T	A	5.174e^-6	0.091	UTR_5_PRIME Ssdp INTRON Ssdp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	1439681	3L_1439681_SNP [dm3] 3L_1439681_SNP [dm6]	A	G	5.223e^-6	0.091	INTRON Ptp61F
3L	12032959	3L_12032959_SNP [dm3] 3L_12039859_SNP [dm6]	T	A	5.460e^-6	0.094	INTRON rols	TF binding site mE1_TFBS_inv
2R	14013426	2R_14013426_SNP [dm3] 2R_18125921_SNP [dm6]	T	A	5.531e^-6	0.094	UPSTREAM Spn55B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1978680	3L_1978680_SNP [dm3] 3L_1978680_SNP [dm6]	A	G	5.706e^-6	0.097	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	21203787	X_21203787_SNP [dm3] X_21332760_SNP [dm6]	T	G	5.776e^-6	0.097	DOWNSTREAM tty INTRON tty
2R	18843035	2R_18843035_SNP [dm3] 2R_22955512_SNP [dm6]	C	G	5.912e^-6	0.097	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8145892	3L_8145892_SNP [dm3] 3L_8152792_SNP [dm6]	A	G	5.935e^-6	0.097	UPSTREAM CG13676 INTERGENIC
3R	8610071	3R_8610071_SNP [dm3] 3R_12784349_SNP [dm6]	G	A	5.970e^-6	0.097	INTERGENIC
X	16977405	X_16977405_SNP [dm3] X_17083372_SNP [dm6]	C	T	6.035e^-6	0.098	DOWNSTREAM CG4955 INTRON CG8945
X	8678733	X_8678733_SNP [dm3] X_8784700_SNP [dm6]	C	A	6.161e^-6	0.099	INTRON Lim1
X	5144670	X_5144670_SNP [dm3] X_5250637_SNP [dm6]	C	A	6.315e^-6	0.1	INTRON CG15465 & 1 other
3L	13908190	3L_13908190_DEL [dm3] 3L_13915090_DEL [dm6]	GCCTCCCAATCGG...	G	6.365e^-6	0.1	INTRON Rgl
X	16973800	X_16973800_SNP [dm3] X_17079767_SNP [dm6]	A	T	6.375e^-6	0.1	UTR_3_PRIME CG4949 DOWNSTREAM CG8945	TF binding site mE1_TFBS_cad
2R	12443059	2R_12443059_SNP [dm3] 2R_16555554_SNP [dm6]	C	A	6.678e^-6	0.104	INTRON Syn2
3R	12903014	3R_12903014_SNP [dm3] 3R_17077292_SNP [dm6]	A	T	6.784e^-6	0.104	INTRON Keap1
X	20707525	X_20707525_SNP [dm3] X_20836498_SNP [dm6]	A	G	6.824e^-6	0.104	INTRON shakB
3R	24495773	3R_24495773_SNP [dm3] 3R_28670051_SNP [dm6]	A	G	6.958e^-6	0.105	NON_SYNONYMOUS_CODING CG33346 UPSTREAM CG9989
3L	2149095	3L_2149095_SNP [dm3] 3L_2149095_SNP [dm6]	G	T	7.011e^-6	0.105	INTRON zormin
2L	12338707	2L_12338707_SNP [dm3] 2L_12338707_SNP [dm6]	C	T	7.146e^-6	0.105	UPSTREAM CG31862 INTERGENIC
3L	4684941	3L_4684941_SNP [dm3] 3L_4684941_SNP [dm6]	T	C	7.206e^-6	0.105	INTRON axo
3L	1443186	3L_1443186_SNP [dm3] 3L_1443186_SNP [dm6]	A	G	7.234e^-6	0.105	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	1960353	3L_1960353_SNP [dm3] 3L_1960353_SNP [dm6]	G	A	7.236e^-6	0.105	SYNONYMOUS_CODING mv
3R	12903179	3R_12903179_SNP [dm3] 3R_17077457_SNP [dm6]	C	T	7.386e^-6	0.106	INTRON Keap1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	10826442	3L_10826442_SNP [dm3] 3L_10833342_SNP [dm6]	A	G	7.494e^-6	0.106	INTERGENIC
3L	15772947	3L_15772947_SNP [dm3] 3L_15779847_SNP [dm6]	T	G	7.554e^-6	0.106	INTERGENIC
3L	10061267	3L_10061267_SNP [dm3] 3L_10068167_SNP [dm6]	T	C	7.597e^-6	0.106	INTRON dpr6
X	5144104	X_5144104_SNP [dm3] X_5250071_SNP [dm6]	G	T	7.599e^-6	0.106	SPLICE_SITE_REGION CG15465 & 1 other INTRON CG15465 & 1 other
3R	22697857	3R_22697857_SNP [dm3] 3R_26872135_SNP [dm6]	T	C	7.690e^-6	0.106	UTR_3_PRIME Rb97D UPSTREAM BM-40-SPARC DOWNSTREAM Rb97D	TF binding site mE1_TFBS_HSA
3L	5680183	3L_5680183_SNP [dm3] 3L_5687083_SNP [dm6]	T	A	7.734e^-6	0.106	INTRON sif	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7817080	3L_7817080_SNP [dm3] 3L_7823980_SNP [dm6]	A	T	7.869e^-6	0.106	INTRON Pdp1
X	18456379	X_18456379_SNP [dm3] X_18562346_SNP [dm6]	C	T	7.906e^-6	0.106	INTRON Bx
2R	6680646	2R_6680646_DEL [dm3] 2R_10793141_DEL [dm6]	ATATATTACATATAT...	A	7.914e^-6	0.106	DOWNSTREAM mthl13 INTRON CG33144
2R	20300867	2R_20300867_SNP [dm3] 2R_24413344_SNP [dm6]	T	G	7.968e^-6	0.106	NON_SYNONYMOUS_CODING CG45068 UTR_5_PRIME CG45069	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	21093728	X_21093728_DEL [dm3] X_21222701_DEL [dm6]	GCTGC	G	8.008e^-6	0.106	INTRON CG32521
X	21093734	X_21093734_DEL [dm3] X_21222707_DEL [dm6]	GCACACAAAGCGAAAAATCA...	G	8.008e^-6	0.106	INTRON CG32521
3L	10809412	3L_10809412_SNP [dm3] 3L_10816312_SNP [dm6]	A	G	8.147e^-6	0.107	UPSTREAM CR45247 DOWNSTREAM CG42831 INTERGENIC
2R	7289088	2R_7289088_SNP [dm3] 2R_11401583_SNP [dm6]	C	G	8.192e^-6	0.107	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	10829567	3L_10829567_SNP [dm3] 3L_10836467_SNP [dm6]	G	A	8.312e^-6	0.107	INTERGENIC
2R	800283	2R_800283_SNP [dm3] 2R_4912778_SNP [dm6]	A	T	8.569e^-6	0.11	INTERGENIC	transposable element FlyBase
2R	8876004	2R_8876004_SNP [dm3] 2R_12988499_SNP [dm6]	A	G	8.682e^-6	0.111	INTERGENIC
X	16975049	X_16975049_SNP [dm3] X_17081016_SNP [dm6]	A	G	8.857e^-6	0.112	SYNONYMOUS_CODING CG8945 UTR_3_PRIME CG4949 UPSTREAM CG4955 DOWNSTREAM CG4949
X	16311977	X_16311977_SNP [dm3] X_16417944_SNP [dm6]	T	A	8.887e^-6	0.112	DOWNSTREAM Traf-like INTRON AnxB11
X	10726566	X_10726566_SNP [dm3] X_10832533_SNP [dm6]	A	G	9.010e^-6	0.112	DOWNSTREAM sbr INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	15772946	3L_15772946_SNP [dm3] 3L_15779846_SNP [dm6]	G	C	9.258e^-6	0.113	INTERGENIC
3L	15772950	3L_15772950_SNP [dm3] 3L_15779850_SNP [dm6]	C	T	9.258e^-6	0.113	INTERGENIC
3L	15772953	3L_15772953_SNP [dm3] 3L_15779853_SNP [dm6]	G	A	9.258e^-6	0.113	INTERGENIC
2R	18315191	2R_18315191_DEL [dm3] 2R_22427686_DEL [dm6]	TT	T	9.309e^-6	0.113	SPLICE_SITE_REGION ppk12 UPSTREAM CG10344 INTRON ppk12
3L	1694906	3L_1694906_SNP [dm3] 3L_1694906_SNP [dm6]	G	A	9.466e^-6	0.114	NON_SYNONYMOUS_CODING CG12011 INTRON CG7991
3R	27206780	3R_27206780_SNP [dm3] 3R_31381058_SNP [dm6]	G	A	9.539e^-6	0.114	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	1703814	3L_1703814_SNP [dm3] 3L_1703814_SNP [dm6]	G	A	9.541e^-6	0.114	INTRON CG7991	TF binding site mE1_TFBS_chinmo
3R	15873669	3R_15873669_SNP [dm3] 3R_20047947_SNP [dm6]	T	C	9.824e^-6	0.116	SYNONYMOUS_CODING CG33934 UTR_3_PRIME Indy-2 INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3L	1277335	3L_1277335_SNP [dm3] 3L_1277335_SNP [dm6]	C	A	1.039e^-5	0.122	INTRON CG32333
3L	1277346	3L_1277346_SNP [dm3] 3L_1277346_SNP [dm6]	G	A	1.039e^-5	0.122	INTRON CG32333
3L	3295492	3L_3295492_SNP [dm3] 3L_3295492_SNP [dm6]	A	G	1.057e^-5	0.122	INTRON CG12009
3R	19460826	3R_19460826_SNP [dm3] 3R_23635104_SNP [dm6]	T	C	1.057e^-5	0.122	INTRON CG31145
3L	1440674	3L_1440674_SNP [dm3] 3L_1440674_SNP [dm6]	C	T	1.064e^-5	0.122	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
3L	8748262	3L_8748262_SNP [dm3] 3L_8755162_SNP [dm6]	T	G	1.093e^-5	0.125	UPSTREAM CG6576 INTRON Fhos
X	21203700	X_21203700_SNP [dm3] X_21332673_SNP [dm6]	G	A	1.114e^-5	0.126	DOWNSTREAM tty INTRON tty
X	5144563	X_5144563_SNP [dm3] X_5250530_SNP [dm6]	A	C	1.123e^-5	0.126	SYNONYMOUS_CODING rg UTR_3_PRIME CG15465
3R	21980586	3R_21980586_DEL [dm3] 3R_26154864_DEL [dm6]	GC	G	1.128e^-5	0.126	INTERGENIC
3L	10823744	3L_10823744_DEL [dm3] 3L_10830644_DEL [dm6]	GT	G	1.132e^-5	0.126	INTERGENIC
3R	11329697	3R_11329697_SNP [dm3] 3R_15503975_SNP [dm6]	T	A	1.188e^-5	0.132	INTERGENIC
X	5144377	X_5144377_DEL [dm3] X_5250344_DEL [dm6]	TT	C	1.196e^-5	0.132	INTRON CG15465 & 1 other
3L	10807700	3L_10807700_SNP [dm3] 3L_10814600_SNP [dm6]	A	T	1.247e^-5	0.136	UPSTREAM CG42831 INTERGENIC
X	16987917	X_16987917_SNP [dm3] X_17093884_SNP [dm6]	T	C	1.264e^-5	0.137	INTRON CG16700 & 1 other
2R	6449912	2R_6449912_SNP [dm3] 2R_10562407_SNP [dm6]	A	G	1.289e^-5	0.139	INTRON psq	TF binding site BDTNP1_TFBS_twi
3L	10830664	3L_10830664_SNP [dm3] 3L_10837564_SNP [dm6]	T	A	1.321e^-5	0.142	INTERGENIC	enhancer mE1_CBP_Enhancers
X	5144074	X_5144074_SNP [dm3] X_5250041_SNP [dm6]	G	A	1.372e^-5	0.145	INTRON CG15465 & 1 other
X	5144075	X_5144075_SNP [dm3] X_5250042_SNP [dm6]	A	G	1.372e^-5	0.145	INTRON CG15465 & 1 other
X	5144078	X_5144078_SNP [dm3] X_5250045_SNP [dm6]	A	T	1.372e^-5	0.145	INTRON CG15465 & 1 other
3R	12930071	3R_12930071_SNP [dm3] 3R_17104349_SNP [dm6]	A	G	1.398e^-5	0.147	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	15330591	3L_15330591_SNP [dm3] 3L_15337491_SNP [dm6]	G	A	1.410e^-5	0.147	SYNONYMOUS_CODING Toll-6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	23282013	3L_23282013_SNP [dm3] 3L_23288913_SNP [dm6]	T	A	1.432e^-5	0.147	INTERGENIC
3L	9183043	3L_9183043_SNP [dm3] 3L_9189943_SNP [dm6]	A	G	1.441e^-5	0.147	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7331253	2L_7331253_SNP [dm3] 2L_7331253_SNP [dm6]	T	A	1.446e^-5	0.147	INTERGENIC
3L	18338828	3L_18338828_SNP [dm3] 3L_18345728_SNP [dm6]	G	T	1.446e^-5	0.147	INTERGENIC	TF binding site mE1_TFBS_Kr mE1_TFBS_Trl
X	17882471	X_17882471_SNP [dm3] X_17988438_SNP [dm6]	C	A	1.448e^-5	0.147	INTRON Sh
3R	12929996	3R_12929996_SNP [dm3] 3R_17104274_SNP [dm6]	G	A	1.459e^-5	0.147	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	10826656	3L_10826656_SNP [dm3] 3L_10833556_SNP [dm6]	T	G	1.460e^-5	0.147	INTERGENIC
3L	10828843	3L_10828843_SNP [dm3] 3L_10835743_SNP [dm6]	G	A	1.532e^-5	0.153	INTERGENIC
3L	10826517	3L_10826517_SNP [dm3] 3L_10833417_SNP [dm6]	A	C	1.572e^-5	0.156	INTERGENIC
3L	11412993	3L_11412993_DEL [dm3] 3L_11419893_DEL [dm6]	TT	T	1.576e^-5	0.156	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21208406	X_21208406_SNP [dm3] X_21337379_SNP [dm6]	G	A	1.598e^-5	0.157	INTRON tty	TF binding site BDTNP1_TFBS_dl
2L	1231190	2L_1231190_DEL [dm3] 2L_1231190_DEL [dm6]	GT	G	1.630e^-5	0.159	INTERGENIC
X	21463906	X_21463906_SNP [dm3] X_21592879_SNP [dm6]	T	C	1.633e^-5	0.159	INTERGENIC
3R	19460829	3R_19460829_SNP [dm3] 3R_23635107_SNP [dm6]	A	C	1.648e^-5	0.159	INTRON CG31145
X	21092569	X_21092569_SNP [dm3] X_21221542_SNP [dm6]	T	C	1.650e^-5	0.159	INTRON CG32521
2L	12338638	2L_12338638_SNP [dm3] 2L_12338638_SNP [dm6]	G	A	1.655e^-5	0.159	UPSTREAM CG31862 INTERGENIC
3L	6280367	3L_6280367_SNP [dm3] 3L_6287267_SNP [dm6]	C	A	1.678e^-5	0.16	INTERGENIC
3L	4355710	3L_4355710_SNP [dm3] 3L_4355710_SNP [dm6]	G	T	1.697e^-5	0.161	INTRON Cip4
3R	23685767	3R_23685767_SNP [dm3] 3R_27860045_SNP [dm6]	A	G	1.708e^-5	0.161	INTRON CG34353
2R	3896159	2R_3896159_SNP [dm3] 2R_8008654_SNP [dm6]	A	T	1.728e^-5	0.161	DOWNSTREAM CG14762 INTRON Odc2	TF binding site mE1_TFBS_cad
3R	11332340	3R_11332340_SNP [dm3] 3R_15506618_SNP [dm6]	C	T	1.738e^-5	0.161	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	10821569	3L_10821569_SNP [dm3] 3L_10828469_SNP [dm6]	A	G	1.739e^-5	0.161	INTERGENIC
X	5144430	X_5144430_INS [dm3] X_5250397_INS [dm6]	T	TG	1.778e^-5	0.161	INTRON CG15465 & 1 other
3R	27211591	3R_27211591_SNP [dm3] 3R_31385869_SNP [dm6]	G	T	1.787e^-5	0.161	INTRON CG1607
3L	1078018	3L_1078018_SNP [dm3] 3L_1078018_SNP [dm6]	T	C	1.795e^-5	0.161	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21463399	X_21463399_DEL [dm3] X_21592372_DEL [dm6]	AA	A	1.798e^-5	0.161	INTERGENIC
2L	8471876	2L_8471876_SNP [dm3] 2L_8471876_SNP [dm6]	T	G	1.800e^-5	0.161	INTRON d
2L	8471897	2L_8471897_SNP [dm3] 2L_8471897_SNP [dm6]	T	G	1.800e^-5	0.161	INTRON d
X	21093758	X_21093758_SNP [dm3] X_21222731_SNP [dm6]	G	C	1.804e^-5	0.161	INTRON CG32521
X	21093760	X_21093760_DEL [dm3] X_21222733_DEL [dm6]	AAA	GC	1.804e^-5	0.161	INTRON CG32521
3L	2008996	3L_2008996_SNP [dm3] 3L_2008996_SNP [dm6]	C	G	1.858e^-5	0.164	EXON CR44535
3R	27212722	3R_27212722_SNP [dm3] 3R_31387000_SNP [dm6]	C	T	1.885e^-5	0.164	INTRON CG1607	TF binding site mE1_TFBS_cad
3R	27212767	3R_27212767_SNP [dm3] 3R_31387045_SNP [dm6]	A	G	1.885e^-5	0.164	INTRON CG1607	TF binding site mE1_TFBS_cad
3R	27212768	3R_27212768_SNP [dm3] 3R_31387046_SNP [dm6]	A	C	1.885e^-5	0.164	INTRON CG1607	TF binding site mE1_TFBS_cad
3L	6280362	3L_6280362_INS [dm3] 3L_6287262_INS [dm6]	A	AGGAACACACACACACACCA...	1.888e^-5	0.164	INTERGENIC
3L	7745731	3L_7745731_SNP [dm3] 3L_7752631_SNP [dm6]	T	C	1.899e^-5	0.164	INTRON CG32373
3L	10832234	3L_10832234_SNP [dm3] 3L_10839134_SNP [dm6]	C	T	1.904e^-5	0.164	INTERGENIC
X	13800275	X_13800275_SNP [dm3] X_13906242_SNP [dm6]	A	G	1.904e^-5	0.164	INTRON mamo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26691308	3R_26691308_DEL [dm3] 3R_30865586_DEL [dm6]	ACTAGATGAAATATT...	A	1.940e^-5	0.166	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	7817083	3L_7817083_SNP [dm3] 3L_7823983_SNP [dm6]	T	C	1.960e^-5	0.167	INTRON Pdp1
3R	11331536	3R_11331536_SNP [dm3] 3R_15505814_SNP [dm6]	T	C	2.008e^-5	0.17	INTERGENIC
3R	11331599	3R_11331599_SNP [dm3] 3R_15505877_SNP [dm6]	C	T	2.008e^-5	0.17	INTERGENIC
3L	11981663	3L_11981663_SNP [dm3] 3L_11988563_SNP [dm6]	C	T	2.055e^-5	0.172	INTRON CG6938
3L	11981677	3L_11981677_SNP [dm3] 3L_11988577_SNP [dm6]	T	A	2.055e^-5	0.172	INTRON CG6938
3L	23950502	3L_23950502_SNP [dm3] 3L_23957402_SNP [dm6]	A	C	2.072e^-5	0.173	INTRON CG40470
2R	13644440	2R_13644440_SNP [dm3] 2R_17756935_SNP [dm6]	C	A	2.092e^-5	0.174	UPSTREAM HLH54F & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	860697	2R_860697_SNP [dm3] 2R_4973192_SNP [dm6]	G	A	2.122e^-5	0.174	INTRON Ir41a
3L	10829253	3L_10829253_SNP [dm3] 3L_10836153_SNP [dm6]	T	G	2.126e^-5	0.174	INTERGENIC
2R	3896162	2R_3896162_SNP [dm3] 2R_8008657_SNP [dm6]	G	A	2.132e^-5	0.174	DOWNSTREAM CG14762 INTRON Odc2	TF binding site mE1_TFBS_cad
3L	10830598	3L_10830598_SNP [dm3] 3L_10837498_SNP [dm6]	G	A	2.137e^-5	0.174	INTERGENIC	enhancer mE1_CBP_Enhancers
3L	4354552	3L_4354552_SNP [dm3] 3L_4354552_SNP [dm6]	G	A	2.139e^-5	0.174	INTRON Cip4
X	17973044	X_17973044_SNP [dm3] X_18079011_SNP [dm6]	T	C	2.151e^-5	0.174	UTR_3_PRIME CG7536 DOWNSTREAM CG7536 & 1 other
3L	689544	3L_689544_SNP [dm3] 3L_689544_SNP [dm6]	A	G	2.184e^-5	0.175	SYNONYMOUS_CODING CG32483 UPSTREAM RabX6	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	689571	3L_689571_SNP [dm3] 3L_689571_SNP [dm6]	C	T	2.184e^-5	0.175	SYNONYMOUS_CODING CG32483 UPSTREAM RabX6	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	13432929	2L_13432929_SNP [dm3] 2L_13432929_SNP [dm6]	C	T	2.236e^-5	0.178	INTRON CG42784
X	9757982	X_9757982_SNP [dm3] X_9863949_SNP [dm6]	T	C	2.242e^-5	0.178	INTERGENIC
3L	10832233	3L_10832233_SNP [dm3] 3L_10839133_SNP [dm6]	T	C	2.273e^-5	0.18	INTERGENIC
3L	2603097	3L_2603097_SNP [dm3] 3L_2603097_SNP [dm6]	C	T	2.297e^-5	0.181	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6193139	3L_6193139_SNP [dm3] 3L_6200039_SNP [dm6]	T	C	2.322e^-5	0.182	UTR_3_PRIME Trn UPSTREAM CG8219 DOWNSTREAM Trn
3R	21232343	3R_21232343_SNP [dm3] 3R_25406621_SNP [dm6]	G	C	2.334e^-5	0.182	INTRON Fur1	TF binding site BDTNP1_TFBS_twi
3L	5701776	3L_5701776_SNP [dm3] 3L_5708676_SNP [dm6]	A	T	2.342e^-5	0.182	INTRON sif
3L	17649086	3L_17649086_SNP [dm3] 3L_17655986_SNP [dm6]	C	G	2.366e^-5	0.182	DOWNSTREAM CG7484 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	1703838	3L_1703838_SNP [dm3] 3L_1703838_SNP [dm6]	A	G	2.367e^-5	0.182	INTRON CG7991	TF binding site mE1_TFBS_chinmo
3L	1703845	3L_1703845_SNP [dm3] 3L_1703845_SNP [dm6]	G	A	2.367e^-5	0.182	INTRON CG7991	TF binding site mE1_TFBS_chinmo
3L	3497146	3L_3497146_SNP [dm3] 3L_3497146_SNP [dm6]	C	A	2.392e^-5	0.183	INTRON CG42324
3R	22528838	3R_22528838_SNP [dm3] 3R_26703116_SNP [dm6]	G	C	2.457e^-5	0.187	INTRON amon
X	5144590	X_5144590_SNP [dm3] X_5250557_SNP [dm6]	T	C	2.501e^-5	0.188	SYNONYMOUS_CODING rg UTR_3_PRIME CG15465
X	5144620	X_5144620_SNP [dm3] X_5250587_SNP [dm6]	G	C	2.501e^-5	0.188	INTRON CG15465 & 1 other
X	5144623	X_5144623_SNP [dm3] X_5250590_SNP [dm6]	C	T	2.501e^-5	0.188	INTRON CG15465 & 1 other
X	5144626	X_5144626_SNP [dm3] X_5250593_SNP [dm6]	G	A	2.501e^-5	0.188	INTRON CG15465 & 1 other
3L	8720759	3L_8720759_SNP [dm3] 3L_8727659_SNP [dm6]	G	A	2.510e^-5	0.188	UPSTREAM Cp15 DOWNSTREAM Cp18 INTERGENIC	TF binding site mE1_TFBS_cad
3L	10832221	3L_10832221_SNP [dm3] 3L_10839121_SNP [dm6]	T	C	2.542e^-5	0.189	INTERGENIC
2L	13088387	2L_13088387_SNP [dm3] 2L_13088387_SNP [dm6]	A	G	2.629e^-5	0.193	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	13134860	2L_13134860_SNP [dm3] 2L_13134860_SNP [dm6]	C	T	2.629e^-5	0.193	DOWNSTREAM CG5122 INTERGENIC
2L	13432791	2L_13432791_SNP [dm3] 2L_13432791_SNP [dm6]	C	A	2.629e^-5	0.193	INTRON CG42784
3R	10646522	3R_10646522_SNP [dm3] 3R_14820800_SNP [dm6]	A	C	2.671e^-5	0.193	NON_SYNONYMOUS_CODING btsz INTRON btsz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10646536	3R_10646536_SNP [dm3] 3R_14820814_SNP [dm6]	T	C	2.671e^-5	0.193	SYNONYMOUS_CODING btsz INTRON btsz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4437162	3L_4437162_SNP [dm3] 3L_4437162_SNP [dm6]	G	A	2.681e^-5	0.193	SYNONYMOUS_CODING CG15021	TF binding site mE1_TFBS_cad
3L	5398472	3L_5398472_SNP [dm3] 3L_5405372_SNP [dm6]	G	C	2.681e^-5	0.193	INTERGENIC
3L	5701778	3L_5701778_SNP [dm3] 3L_5708678_SNP [dm6]	T	A	2.681e^-5	0.193	INTRON sif
3L	820026	3L_820026_SNP [dm3] 3L_820026_SNP [dm6]	G	T	2.681e^-5	0.193	UPSTREAM CR43883 INTERGENIC
X	21093708	X_21093708_SNP [dm3] X_21222681_SNP [dm6]	G	C	2.728e^-5	0.195	INTRON CG32521
2R	19322824	2R_19322824_SNP [dm3] 2R_23435301_SNP [dm6]	G	C	2.783e^-5	0.198	INTERGENIC
3L	1440472	3L_1440472_SNP [dm3] 3L_1440472_SNP [dm6]	G	A	2.824e^-5	0.198	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4107315	3L_4107315_SNP [dm3] 3L_4107315_SNP [dm6]	C	G	2.839e^-5	0.198	UPSTREAM Ack DOWNSTREAM Fit1 EXON CR45670
2R	9195604	2R_9195604_DEL [dm3] 2R_13308099_DEL [dm6]	GCGTCCTTGG	G	2.852e^-5	0.198	INTERGENIC
3L	13420430	3L_13420430_SNP [dm3] 3L_13427330_SNP [dm6]	T	G	2.855e^-5	0.198	UPSTREAM CG14105 INTERGENIC
3L	7891399	3L_7891399_SNP [dm3] 3L_7898299_SNP [dm6]	C	G	2.881e^-5	0.198	SPLICE_SITE_REGION pbl INTRON pbl
3L	3295341	3L_3295341_SNP [dm3] 3L_3295341_SNP [dm6]	C	T	2.893e^-5	0.198	INTRON CG12009
2L	7384442	2L_7384442_SNP [dm3] 2L_7384442_SNP [dm6]	C	T	2.893e^-5	0.198	DOWNSTREAM CG5149 & 1 other INTERGENIC
2L	7384445	2L_7384445_SNP [dm3] 2L_7384445_SNP [dm6]	C	G	2.919e^-5	0.198	DOWNSTREAM CG5149 & 1 other INTERGENIC
X	16979297	X_16979297_SNP [dm3] X_17085264_SNP [dm6]	G	C	2.927e^-5	0.198	SYNONYMOUS_CODING CG8945
3L	7337564	3L_7337564_SNP [dm3] 3L_7344464_SNP [dm6]	A	G	2.931e^-5	0.198	UPSTREAM CG8596 INTRON CG8596	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	3568339	3L_3568339_SNP [dm3] 3L_3568339_SNP [dm6]	G	A	2.947e^-5	0.198	INTRON Eip63E	TF binding site mE1_TFBS_bab1
X	8757977	X_8757977_SNP [dm3] X_8863944_SNP [dm6]	G	A	2.992e^-5	0.198	UPSTREAM CG12075 INTRON CG12075	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8757982	X_8757982_DEL [dm3] X_8863949_DEL [dm6]	AGTTCTACA	A	2.992e^-5	0.198	UPSTREAM CG12075 INTRON CG12075	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3897667	2R_3897667_SNP [dm3] 2R_8010162_SNP [dm6]	G	A	3.000e^-5	0.198	UTR_3_PRIME CG14762	TF binding site mE1_TFBS_cad
3L	13746344	3L_13746344_SNP [dm3] 3L_13753244_SNP [dm6]	A	C	3.009e^-5	0.198	INTRON bru-3
3L	8721077	3L_8721077_SNP [dm3] 3L_8727977_SNP [dm6]	A	G	3.009e^-5	0.198	UPSTREAM Cp15 DOWNSTREAM Cp18 INTERGENIC
X	20023373	X_20023373_INS [dm3] X_20129340_INS [dm6]	T	TATTTTT	3.027e^-5	0.198	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12964333	2L_12964333_SNP [dm3] 2L_12964333_SNP [dm6]	G	T	3.028e^-5	0.198	INTERGENIC
2L	12964334	2L_12964334_SNP [dm3] 2L_12964334_SNP [dm6]	A	T	3.028e^-5	0.198	INTERGENIC
3L	4438149	3L_4438149_SNP [dm3] 3L_4438149_SNP [dm6]	C	G	3.059e^-5	0.198	SYNONYMOUS_CODING CG15021	TF binding site mE1_TFBS_cad
3L	9988301	3L_9988301_SNP [dm3] 3L_9995201_SNP [dm6]	G	A	3.064e^-5	0.198	INTRON dpr6
3L	4437843	3L_4437843_SNP [dm3] 3L_4437843_SNP [dm6]	A	G	3.070e^-5	0.198	SYNONYMOUS_CODING CG15021	TF binding site mE1_TFBS_cad
X	21092778	X_21092778_SNP [dm3] X_21221751_SNP [dm6]	C	T	3.082e^-5	0.198	INTRON CG32521
3L	8701893	3L_8701893_SNP [dm3] 3L_8708793_SNP [dm6]	T	C	3.095e^-5	0.198	INTERGENIC	regulatory region REDfly_CRMs
3L	8701918	3L_8701918_SNP [dm3] 3L_8708818_SNP [dm6]	T	G	3.095e^-5	0.198	INTERGENIC	regulatory region REDfly_CRMs
3L	8701920	3L_8701920_SNP [dm3] 3L_8708820_SNP [dm6]	A	T	3.095e^-5	0.198	INTERGENIC	regulatory region REDfly_CRMs
2L	7331167	2L_7331167_SNP [dm3] 2L_7331167_SNP [dm6]	T	G	3.115e^-5	0.198	INTERGENIC
2R	13725768	2R_13725768_SNP [dm3] 2R_17838263_SNP [dm6]	G	A	3.123e^-5	0.198	INTRON grh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13797930	2R_13797930_DEL [dm3] 2R_17910425_DEL [dm6]	AAGAGTACAC	A	3.123e^-5	0.198	INTRON Elk
2R	13797954	2R_13797954_DEL [dm3] 2R_17910449_DEL [dm6]	TCC	T	3.123e^-5	0.198	INTRON Elk
2R	13797957	2R_13797957_INS [dm3] 2R_17910452_INS [dm6]	A	ATTGTATAAAT...	3.123e^-5	0.198	INTRON Elk
2R	13797962	2R_13797962_SNP [dm3] 2R_17910457_SNP [dm6]	T	C	3.123e^-5	0.198	INTRON Elk
X	5144758	X_5144758_SNP [dm3] X_5250725_SNP [dm6]	A	G	3.133e^-5	0.198	INTRON CG15465 & 1 other
X	16961837	X_16961837_SNP [dm3] X_17067804_SNP [dm6]	C	G	3.139e^-5	0.198	NON_SYNONYMOUS_CODING CG43077 DOWNSTREAM CG8949
3L	7326655	3L_7326655_DEL [dm3] 3L_7333555_DEL [dm6]	CG	C	3.155e^-5	0.198	UTR_3_PRIME CG43781 & 1 other DOWNSTREAM mus312 & 1 other
3R	5694129	3R_5694129_SNP [dm3] 3R_9868407_SNP [dm6]	A	G	3.234e^-5	0.203	UPSTREAM Teh1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
X	21197593	X_21197593_SNP [dm3] X_21326566_SNP [dm6]	A	G	3.246e^-5	0.203	SYNONYMOUS_CODING CG1486
3R	10139173	3R_10139173_SNP [dm3] 3R_14313451_SNP [dm6]	A	T	3.276e^-5	0.203	INTRON CG31321
2L	16870498	2L_16870498_SNP [dm3] 2L_16870498_SNP [dm6]	T	C	3.282e^-5	0.203	EXON CR31781	TF binding site mE1_TFBS_cad
X	16978824	X_16978824_DEL [dm3] X_17084791_DEL [dm6]	ACAA	A	3.285e^-5	0.203	INTRON CG8945
3L	1704122	3L_1704122_SNP [dm3] 3L_1704122_SNP [dm6]	A	G	3.298e^-5	0.203	INTRON CG7991	TF binding site mE1_TFBS_chinmo
3R	10764250	3R_10764250_SNP [dm3] 3R_14938528_SNP [dm6]	G	T	3.336e^-5	0.205	INTERGENIC
3L	5535724	3L_5535724_SNP [dm3] 3L_5542624_SNP [dm6]	A	G	3.407e^-5	0.209	SYNONYMOUS_CODING CG10625 INTRON CG10625	TF binding site mE1_TFBS_chinmo
3R	18510096	3R_18510096_SNP [dm3] 3R_22684374_SNP [dm6]	T	C	3.444e^-5	0.21	DOWNSTREAM CG45058 & 1 other INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	20299746	2R_20299746_SNP [dm3] 2R_24412223_SNP [dm6]	A	G	3.454e^-5	0.21	NON_SYNONYMOUS_CODING CG45068 UTR_5_PRIME CG45069	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	24343437	3R_24343437_SNP [dm3] 3R_28517715_SNP [dm6]	G	A	3.543e^-5	0.214	INTRON Dhc98D	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12547135	2R_12547135_SNP [dm3] 2R_16659630_SNP [dm6]	C	T	3.551e^-5	0.214	UPSTREAM Picot INTRON Picot
3R	24495588	3R_24495588_SNP [dm3] 3R_28669866_SNP [dm6]	T	C	3.559e^-5	0.214	SYNONYMOUS_CODING CG33346 UPSTREAM CG9989
3L	13746265	3L_13746265_SNP [dm3] 3L_13753165_SNP [dm6]	A	G	3.647e^-5	0.214	INTRON bru-3
2L	7329089	2L_7329089_INS [dm3] 2L_7329089_INS [dm6]	G	GT	3.668e^-5	0.214	EXON CR45304
X	16993021	X_16993021_SNP [dm3] X_17098988_SNP [dm6]	C	T	3.674e^-5	0.214	DOWNSTREAM CG16700 INTRON CG4991
3L	10829183	3L_10829183_SNP [dm3] 3L_10836083_SNP [dm6]	G	T	3.685e^-5	0.214	INTERGENIC
3L	3291094	3L_3291094_SNP [dm3] 3L_3291094_SNP [dm6]	G	A	3.687e^-5	0.214	UPSTREAM CG12009 DOWNSTREAM CG12017 INTERGENIC
3L	6443814	3L_6443814_SNP [dm3] 3L_6450714_SNP [dm6]	C	A	3.691e^-5	0.214	INTRON CG42747
2L	7331169	2L_7331169_SNP [dm3] 2L_7331169_SNP [dm6]	C	T	3.711e^-5	0.214	INTERGENIC
3L	5208715	3L_5208715_SNP [dm3] 3L_5215615_SNP [dm6]	A	G	3.727e^-5	0.214	INTRON shep
3L	10821713	3L_10821713_SNP [dm3] 3L_10828613_SNP [dm6]	A	C	3.731e^-5	0.214	INTERGENIC
3L	10821871	3L_10821871_SNP [dm3] 3L_10828771_SNP [dm6]	C	G	3.731e^-5	0.214	INTERGENIC
3L	8203325	3L_8203325_SNP [dm3] 3L_8210225_SNP [dm6]	C	G	3.739e^-5	0.214	NON_SYNONYMOUS_CODING CG32364
3L	1273682	3L_1273682_SNP [dm3] 3L_1273682_SNP [dm6]	A	G	3.744e^-5	0.214	INTRON CG9134
3L	16846283	3L_16846283_SNP [dm3] 3L_16853183_SNP [dm6]	A	G	3.744e^-5	0.214	SYNONYMOUS_CODING Rh4 UPSTREAM sina DOWNSTREAM CG9715	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco
X	5681530	X_5681530_DEL [dm3] X_5787497_DEL [dm6]	TACGC	T	3.746e^-5	0.214	INTRON CG42699
2R	798831	2R_798831_SNP [dm3] 2R_4911326_SNP [dm6]	G	T	3.748e^-5	0.214	INTERGENIC	transposable element FlyBase
3L	4383331	3L_4383331_SNP [dm3] 3L_4383331_SNP [dm6]	A	G	3.752e^-5	0.214	INTERGENIC
3L	10829275	3L_10829275_SNP [dm3] 3L_10836175_SNP [dm6]	G	A	3.763e^-5	0.214	INTERGENIC
X	8757814	X_8757814_DEL [dm3] X_8863781_DEL [dm6]	AA	A	3.763e^-5	0.214	UPSTREAM CG12075 INTRON CG12075	TF binding site BDTNP1_TFBS_dl
2L	13088477	2L_13088477_SNP [dm3] 2L_13088477_SNP [dm6]	T	C	3.790e^-5	0.215	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	712762	3L_712762_SNP [dm3] 3L_712762_SNP [dm6]	T	A	3.807e^-5	0.215	UPSTREAM CG13896 INTERGENIC
3L	4459886	3L_4459886_SNP [dm3] 3L_4459886_SNP [dm6]	C	T	3.821e^-5	0.215	SYNONYMOUS_CODING CG15022 DOWNSTREAM CG15023	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2939390	3L_2939390_SNP [dm3] 3L_2939390_SNP [dm6]	C	T	3.828e^-5	0.215	INTRON Shab
3R	23516639	3R_23516639_SNP [dm3] 3R_27690917_SNP [dm6]	C	A	3.858e^-5	0.216	INTRON CG12880	TF binding site mE1_TFBS_chinmo
3R	10147124	3R_10147124_INS [dm3] 3R_14321402_INS [dm6]	T	TT	3.859e^-5	0.216	UTR_3_PRIME Afti DOWNSTREAM pr-set7	TF binding site mE1_TFBS_cad
3L	7882323	3L_7882323_SNP [dm3] 3L_7889223_SNP [dm6]	A	T	3.907e^-5	0.217	INTRON CG32365
3R	22626260	3R_22626260_SNP [dm3] 3R_26800538_SNP [dm6]	A	T	3.924e^-5	0.217	INTRON Tl
3R	22626282	3R_22626282_DEL [dm3] 3R_26800560_DEL [dm6]	CAACCC	GT	3.924e^-5	0.217	INTRON Tl
3L	1693524	3L_1693524_SNP [dm3] 3L_1693524_SNP [dm6]	C	T	3.938e^-5	0.217	INTRON CG7991
3L	1693561	3L_1693561_DEL [dm3] 3L_1693561_DEL [dm6]	ACCTAAATACTTAATATAAC...	A	3.938e^-5	0.217	INTRON CG7991
3L	8705676	3L_8705676_DEL [dm3] 3L_8712576_DEL [dm6]	TGCC	A	4.018e^-5	0.22	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8705681	3L_8705681_SNP [dm3] 3L_8712581_SNP [dm6]	T	A	4.018e^-5	0.22	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	14275098	3L_14275098_SNP [dm3] 3L_14281998_SNP [dm6]	C	A	4.035e^-5	0.22	INTRON fz
3L	10454918	3L_10454918_SNP [dm3] 3L_10461818_SNP [dm6]	C	T	4.107e^-5	0.221	NON_SYNONYMOUS_CODING Gem3
X	21464008	X_21464008_SNP [dm3] X_21592981_SNP [dm6]	T	A	4.110e^-5	0.221	INTERGENIC
3R	19460710	3R_19460710_SNP [dm3] 3R_23634988_SNP [dm6]	A	G	4.116e^-5	0.221	INTRON CG31145
X	12771671	X_12771671_SNP [dm3] X_12877638_SNP [dm6]	T	G	4.137e^-5	0.221	INTRON Pde9
3R	26638538	3R_26638538_SNP [dm3] 3R_30812816_SNP [dm6]	C	T	4.193e^-5	0.221	INTRON cindr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13419006	3L_13419006_INS [dm3] 3L_13425906_INS [dm6]	T	TT	4.202e^-5	0.221	UTR_3_PRIME CG14105 UPSTREAM CG14106
2L	13088413	2L_13088413_INS [dm3] 2L_13088413_INS [dm6]	C	CTTC	4.203e^-5	0.221	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	5144386	X_5144386_SNP [dm3] X_5250353_SNP [dm6]	G	A	4.206e^-5	0.221	INTRON CG15465 & 1 other
X	5144639	X_5144639_SNP [dm3] X_5250606_SNP [dm6]	C	T	4.206e^-5	0.221	INTRON CG15465 & 1 other
X	6309600	X_6309600_SNP [dm3] X_6415567_SNP [dm6]	G	A	4.220e^-5	0.221	INTERGENIC
3R	5403998	3R_5403998_SNP [dm3] 3R_9578276_SNP [dm6]	A	G	4.231e^-5	0.221	NON_SYNONYMOUS_CODING CG8273 UPSTREAM Kap-alpha3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	16987861	X_16987861_SNP [dm3] X_17093828_SNP [dm6]	A	G	4.241e^-5	0.221	INTRON CG16700 & 1 other
3R	13024024	3R_13024024_SNP [dm3] 3R_17198302_SNP [dm6]	A	G	4.279e^-5	0.221	INTRON Mur89F
X	9115300	X_9115300_SNP [dm3] X_9221267_SNP [dm6]	A	G	4.288e^-5	0.221	SYNONYMOUS_CODING t
3R	5694080	3R_5694080_SNP [dm3] 3R_9868358_SNP [dm6]	T	A	4.300e^-5	0.221	UPSTREAM Teh1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_kn mE1_TFBS_ttk
3R	27113166	3R_27113166_SNP [dm3] 3R_31287444_SNP [dm6]	A	T	4.325e^-5	0.221	INTERGENIC
X	21048347	X_21048347_SNP [dm3] X_21177320_SNP [dm6]	T	A	4.327e^-5	0.221	INTERGENIC
3L	10821723	3L_10821723_SNP [dm3] 3L_10828623_SNP [dm6]	C	T	4.333e^-5	0.221	INTERGENIC
3L	14994761	3L_14994761_SNP [dm3] 3L_15001661_SNP [dm6]	G	T	4.334e^-5	0.221	UTR_3_PRIME Reck DOWNSTREAM Prosbeta2
X	17779711	X_17779711_DEL [dm3] X_17885678_DEL [dm6]	GT	G	4.341e^-5	0.221	DOWNSTREAM CG12985 INTRON mnb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	16704348	X_16704348_SNP [dm3] X_16810315_SNP [dm6]	T	A	4.360e^-5	0.221	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3598350	3L_3598350_SNP [dm3] 3L_3598350_SNP [dm6]	T	A	4.382e^-5	0.221	INTRON Eip63E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8708015	3L_8708015_DEL [dm3] 3L_8714915_DEL [dm6]	TA	T	4.382e^-5	0.221	INTERGENIC	regulatory region REDfly_CRMs
3L	8708031	3L_8708031_SNP [dm3] 3L_8714931_SNP [dm6]	A	G	4.382e^-5	0.221	INTERGENIC	regulatory region REDfly_CRMs
3L	8708035	3L_8708035_INS [dm3] 3L_8714935_INS [dm6]	A	AAA	4.382e^-5	0.221	INTERGENIC	regulatory region REDfly_CRMs
3L	8708037	3L_8708037_SNP [dm3] 3L_8714937_SNP [dm6]	T	A	4.382e^-5	0.221	INTERGENIC	regulatory region REDfly_CRMs
3L	8724515	3L_8724515_SNP [dm3] 3L_8731415_SNP [dm6]	T	A	4.382e^-5	0.221	UPSTREAM Cp16 DOWNSTREAM Cp19 INTERGENIC
3L	8724528	3L_8724528_SNP [dm3] 3L_8731428_SNP [dm6]	T	A	4.382e^-5	0.221	UPSTREAM Cp16 DOWNSTREAM Cp19 INTERGENIC
3L	10830697	3L_10830697_SNP [dm3] 3L_10837597_SNP [dm6]	C	A	4.389e^-5	0.221	INTERGENIC	enhancer mE1_CBP_Enhancers
3L	1686602	3L_1686602_INS [dm3] 3L_1686602_INS [dm6]	T	TA	4.401e^-5	0.221	INTRON CG7991
3R	23938649	3R_23938649_SNP [dm3] 3R_28112927_SNP [dm6]	A	G	4.415e^-5	0.221	INTERGENIC
3L	12826176	3L_12826176_SNP [dm3] 3L_12833076_SNP [dm6]	T	G	4.423e^-5	0.221	UPSTREAM CG10960 INTRON CG10960	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	16703427	X_16703427_SNP [dm3] X_16809394_SNP [dm6]	C	A	4.438e^-5	0.221	UPSTREAM CR44053 DOWNSTREAM ppk28 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	5010447	X_5010447_SNP [dm3] X_5116414_SNP [dm6]	G	A	4.451e^-5	0.221	INTRON rg & 1 other
2L	15500625	2L_15500625_SNP [dm3] 2L_15500625_SNP [dm6]	T	G	4.477e^-5	0.222	INTRON lace	TF binding site BDTNP1_TFBS_dl
3L	10456919	3L_10456919_DEL [dm3] 3L_10463819_DEL [dm6]	ACA	A	4.499e^-5	0.222	UTR_5_PRIME CG32061 UPSTREAM Gem3	TF binding site mE1_TFBS_bab1
3R	25339621	3R_25339621_SNP [dm3] 3R_29513899_SNP [dm6]	C	A	4.510e^-5	0.222	INTERGENIC
3R	23365153	3R_23365153_SNP [dm3] 3R_27539431_SNP [dm6]	G	A	4.554e^-5	0.223	DOWNSTREAM CR44288 INTERGENIC
3R	23308558	3R_23308558_SNP [dm3] 3R_27482836_SNP [dm6]	C	T	4.583e^-5	0.223	UTR_3_PRIME Cyp6a18
3R	9743756	3R_9743756_SNP [dm3] 3R_13918034_SNP [dm6]	G	A	4.598e^-5	0.223	INTERGENIC
3R	24428597	3R_24428597_SNP [dm3] 3R_28602875_SNP [dm6]	T	A	4.608e^-5	0.223	SYNONYMOUS_CODING Hrb98DE UPSTREAM snoRNA:Psi28S-3305c DOWNSTREAM snoRNA:Psi28S-3405b & 3 others
3R	5403854	3R_5403854_SNP [dm3] 3R_9578132_SNP [dm6]	T	C	4.611e^-5	0.223	UTR_5_PRIME CG8273 UPSTREAM Kap-alpha3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	21195622	X_21195622_SNP [dm3] X_21324595_SNP [dm6]	C	T	4.613e^-5	0.223	UPSTREAM Dd INTRON CG1486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	15512455	X_15512455_SNP [dm3] X_15618422_SNP [dm6]	A	G	4.632e^-5	0.224	INTRON sog	TF binding site BDTNP1_TFBS_dl
3L	14594430	3L_14594430_SNP [dm3] 3L_14601330_SNP [dm6]	A	G	4.657e^-5	0.224	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	18079984	2R_18079984_SNP [dm3] 2R_22192479_SNP [dm6]	C	T	4.665e^-5	0.224	INTRON Swim
X	16704331	X_16704331_DEL [dm3] X_16810298_DEL [dm6]	AA	A	4.673e^-5	0.224	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10809418	3L_10809418_INS [dm3] 3L_10816318_INS [dm6]	T	TT	4.758e^-5	0.227	UPSTREAM CR45247 DOWNSTREAM CG42831 INTERGENIC
2L	12179822	2L_12179822_DEL [dm3] 2L_12179822_DEL [dm6]	ACGCCACCGCATAGAGGAGC...	A	4.762e^-5	0.227	INTRON aret
2L	13088540	2L_13088540_SNP [dm3] 2L_13088540_SNP [dm6]	G	A	4.762e^-5	0.227	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	5144080	X_5144080_SNP [dm3] X_5250047_SNP [dm6]	A	G	4.831e^-5	0.229	INTRON CG15465 & 1 other
3R	22525987	3R_22525987_SNP [dm3] 3R_26700265_SNP [dm6]	T	C	4.860e^-5	0.23	INTRON amon
3L	7285832	3L_7285832_SNP [dm3] 3L_7292732_SNP [dm6]	T	C	4.891e^-5	0.231	INTRON unc-13-4A
3L	16951860	3L_16951860_SNP [dm3] 3L_16958760_SNP [dm6]	G	A	4.894e^-5	0.231	INTRON Nc73EF
3L	4769941	3L_4769941_INS [dm3] 3L_4769941_INS [dm6]	A	ATTTCCACCTCCC...	4.928e^-5	0.231	INTRON RhoGEF64C
X	5144659	X_5144659_INS [dm3] X_5250626_INS [dm6]	A	AAAACAGTATTAGGGGA...	4.933e^-5	0.231	INTRON CG15465 & 1 other
3L	2095240	3L_2095240_SNP [dm3] 3L_2095240_SNP [dm6]	T	G	5.098e^-5	0.237	NON_SYNONYMOUS_CODING sls
X	15013341	X_15013341_SNP [dm3] X_15119308_SNP [dm6]	G	T	5.098e^-5	0.237	INTERGENIC
3R	19450616	3R_19450616_SNP [dm3] 3R_23624894_SNP [dm6]	C	T	5.149e^-5	0.237	INTRON CG31145
3L	22500540	3L_22500540_INS [dm3] 3L_22507440_INS [dm6]	C	CGG	5.151e^-5	0.237	INTERGENIC	transposable element FlyBase
3L	9302561	3L_9302561_SNP [dm3] 3L_9309461_SNP [dm6]	T	A	5.155e^-5	0.237	INTERGENIC
2L	4348279	2L_4348279_SNP [dm3] 2L_4348279_SNP [dm6]	C	T	5.156e^-5	0.237	UPSTREAM CR44698 & 1 other DOWNSTREAM CR44697 INTERGENIC
X	5010404	X_5010404_INS [dm3] X_5116371_INS [dm6]	G	GG	5.156e^-5	0.237	INTRON rg & 1 other
3L	1077699	3L_1077699_SNP [dm3] 3L_1077699_SNP [dm6]	A	C	5.178e^-5	0.238	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13737879	2L_13737879_SNP [dm3] 2L_13737879_SNP [dm6]	A	G	5.196e^-5	0.238	DOWNSTREAM CG31813 INTERGENIC
3L	8409359	3L_8409359_SNP [dm3] 3L_8416259_SNP [dm6]	G	A	5.219e^-5	0.239	SYNONYMOUS_CODING CG32354 DOWNSTREAM Exo70
2L	13422060	2L_13422060_SNP [dm3] 2L_13422060_SNP [dm6]	C	T	5.250e^-5	0.239	INTRON CG42784
2L	7631040	2L_7631040_SNP [dm3] 2L_7631040_SNP [dm6]	C	T	5.257e^-5	0.239	INTERGENIC
2L	12179815	2L_12179815_SNP [dm3] 2L_12179815_SNP [dm6]	T	C	5.287e^-5	0.239	INTRON aret
3L	14994717	3L_14994717_SNP [dm3] 3L_15001617_SNP [dm6]	G	T	5.292e^-5	0.239	UTR_3_PRIME Reck DOWNSTREAM Prosbeta2
3L	7328597	3L_7328597_DEL [dm3] 3L_7335497_DEL [dm6]	CGTG	A	5.303e^-5	0.239	UTR_3_PRIME eco UPSTREAM CG43780 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4671996	2L_4671996_SNP [dm3] 2L_4671996_SNP [dm6]	C	G	5.382e^-5	0.241	INTERGENIC
3L	12535911	3L_12535911_DEL [dm3] 3L_12542811_DEL [dm6]	CC	C	5.383e^-5	0.241	INTRON sowah EXON CR43612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19352715	3L_19352715_SNP [dm3] 3L_19359615_SNP [dm6]	A	T	5.386e^-5	0.241	INTRON CG32206
3R	12878051	3R_12878051_SNP [dm3] 3R_17052329_SNP [dm6]	A	G	5.414e^-5	0.242	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_Kr
3R	3868502	3R_3868502_SNP [dm3] 3R_8042780_SNP [dm6]	C	T	5.469e^-5	0.244	INTRON CG43060	transposable element FlyBase
3L	11946776	3L_11946776_DEL [dm3] 3L_11953676_DEL [dm6]	AA	A	5.484e^-5	0.244	UPSTREAM CG7248 & 1 other INTERGENIC
2L	12122212	2L_12122212_SNP [dm3] 2L_12122212_SNP [dm6]	T	C	5.512e^-5	0.244	INTRON CG17211
3L	7283923	3L_7283923_SNP [dm3] 3L_7290823_SNP [dm6]	G	A	5.512e^-5	0.244	INTRON unc-13-4A
2R	12336262	2R_12336262_SNP [dm3] 2R_16448757_SNP [dm6]	C	A	5.584e^-5	0.246	INTERGENIC
2R	14133134	2R_14133134_SNP [dm3] 2R_18245629_SNP [dm6]	G	C	5.584e^-5	0.246	DOWNSTREAM CR44420 INTERGENIC	TF binding site BDTNP1_TFBS_da
X	16312019	X_16312019_SNP [dm3] X_16417986_SNP [dm6]	C	G	5.624e^-5	0.247	SYNONYMOUS_CODING AnxB11 DOWNSTREAM Traf-like
X	21027359	X_21027359_INS [dm3] X_21156332_INS [dm6]	A	ACAAAC	5.631e^-5	0.247	UPSTREAM CR45499 EXON CR32511
X	8758198	X_8758198_SNP [dm3] X_8864165_SNP [dm6]	T	C	5.654e^-5	0.248	UTR_5_PRIME CG12075 INTRON CG12075	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14560237	2R_14560237_SNP [dm3] 2R_18672732_SNP [dm6]	T	A	5.677e^-5	0.248	INTRON edl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	21093096	X_21093096_SNP [dm3] X_21222069_SNP [dm6]	C	G	5.760e^-5	0.25	INTRON CG32521
3L	10717944	3L_10717944_SNP [dm3] 3L_10724844_SNP [dm6]	T	A	5.762e^-5	0.25	INTERGENIC
2R	20300409	2R_20300409_SNP [dm3] 2R_24412886_SNP [dm6]	G	T	5.817e^-5	0.252	NON_SYNONYMOUS_CODING CG45068 UTR_5_PRIME CG45069	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24643129	3R_24643129_SNP [dm3] 3R_28817407_SNP [dm6]	C	T	5.859e^-5	0.253	UTR_3_PRIME CG1523 DOWNSTREAM CG1646	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15945335	3L_15945335_SNP [dm3] 3L_15952235_SNP [dm6]	G	A	5.867e^-5	0.253	START_GAINED Pka-C3 UTR_5_PRIME Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	8758257	X_8758257_SNP [dm3] X_8864224_SNP [dm6]	T	C	5.905e^-5	0.254	UTR_5_PRIME CG12075 INTRON CG12075	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10826682	3L_10826682_SNP [dm3] 3L_10833582_SNP [dm6]	T	C	6.012e^-5	0.258	INTERGENIC
3L	10830663	3L_10830663_SNP [dm3] 3L_10837563_SNP [dm6]	T	C	6.046e^-5	0.258	INTERGENIC	enhancer mE1_CBP_Enhancers
2L	13088454	2L_13088454_SNP [dm3] 2L_13088454_SNP [dm6]	G	A	6.052e^-5	0.258	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	9345853	2R_9345853_SNP [dm3] 2R_13458348_SNP [dm6]	C	T	6.055e^-5	0.258	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14994706	3L_14994706_SNP [dm3] 3L_15001606_SNP [dm6]	A	G	6.082e^-5	0.258	UTR_3_PRIME Reck DOWNSTREAM Prosbeta2
3L	14994714	3L_14994714_SNP [dm3] 3L_15001614_SNP [dm6]	T	A	6.082e^-5	0.258	UTR_3_PRIME Reck DOWNSTREAM Prosbeta2
X	16987912	X_16987912_SNP [dm3] X_17093879_SNP [dm6]	C	A	6.084e^-5	0.258	INTRON CG16700 & 1 other
X	5143630	X_5143630_SNP [dm3] X_5249597_SNP [dm6]	A	C	6.109e^-5	0.258	SYNONYMOUS_CODING rg UTR_3_PRIME CG15465
X	2436373	X_2436373_SNP [dm3] X_2542340_SNP [dm6]	G	C	6.162e^-5	0.26	INTRON trol	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	17455467	X_17455467_SNP [dm3] X_17561434_SNP [dm6]	G	T	6.170e^-5	0.26	UPSTREAM CG43658 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	17095445	2L_17095445_SNP [dm3] 2L_17095445_SNP [dm6]	C	A	6.210e^-5	0.261	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12578942	X_12578942_SNP [dm3] X_12684909_SNP [dm6]	T	C	6.227e^-5	0.261	UTR_3_PRIME Smr
3L	6333142	3L_6333142_DEL [dm3] 3L_6340042_DEL [dm6]	TTT	T	6.270e^-5	0.262	INTRON CG13300	TF binding site BDTNP1_TFBS_twi
2L	2333152	2L_2333152_SNP [dm3] 2L_2333152_SNP [dm6]	G	A	6.276e^-5	0.262	INTRON CG9967 & 1 other
2R	12799125	2R_12799125_SNP [dm3] 2R_16911620_SNP [dm6]	A	C	6.347e^-5	0.264	INTERGENIC
3R	20549088	3R_20549088_SNP [dm3] 3R_24723366_SNP [dm6]	C	T	6.363e^-5	0.264	UPSTREAM snoRNA:Me18S-C1280 INTRON tok
2L	12156866	2L_12156866_SNP [dm3] 2L_12156866_SNP [dm6]	A	T	6.408e^-5	0.266	INTRON CG31760
X	21463452	X_21463452_DEL [dm3] X_21592425_DEL [dm6]	GG	G	6.450e^-5	0.266	INTERGENIC
3L	13420399	3L_13420399_SNP [dm3] 3L_13427299_SNP [dm6]	A	G	6.454e^-5	0.266	UPSTREAM CG14105 INTERGENIC
3L	1993477	3L_1993477_SNP [dm3] 3L_1993477_SNP [dm6]	G	C	6.488e^-5	0.267	INTERGENIC
3L	3671513	3L_3671513_SNP [dm3] 3L_3671513_SNP [dm6]	C	T	6.528e^-5	0.268	INTERGENIC
3L	8704005	3L_8704005_SNP [dm3] 3L_8710905_SNP [dm6]	G	C	6.529e^-5	0.268	INTERGENIC	regulatory region REDfly_CRMs
3R	669036	3R_669036_SNP [dm3] 3R_4843314_SNP [dm6]	C	T	6.574e^-5	0.268	INTERGENIC	TF binding site mE1_TFBS_cad
X	20690204	X_20690204_SNP [dm3] X_20819177_SNP [dm6]	A	T	6.580e^-5	0.268	INTRON shakB
3R	26067466	3R_26067466_SNP [dm3] 3R_30241744_SNP [dm6]	T	C	6.607e^-5	0.269	SYNONYMOUS_CODING CG9737	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12964348	2L_12964348_SNP [dm3] 2L_12964348_SNP [dm6]	A	G	6.639e^-5	0.269	INTERGENIC
2L	13088542	2L_13088542_SNP [dm3] 2L_13088542_SNP [dm6]	A	G	6.639e^-5	0.269	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	24647337	3R_24647337_SNP [dm3] 3R_28821615_SNP [dm6]	T	C	6.646e^-5	0.269	SYNONYMOUS_CODING CG1647	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25880081	3R_25880081_SNP [dm3] 3R_30054359_SNP [dm6]	A	T	6.662e^-5	0.269	DOWNSTREAM spn-A INTRON CG7946
3L	8705295	3L_8705295_SNP [dm3] 3L_8712195_SNP [dm6]	C	G	6.741e^-5	0.27	INTERGENIC	regulatory region REDfly_CRMs
3R	10147049	3R_10147049_SNP [dm3] 3R_14321327_SNP [dm6]	A	T	6.742e^-5	0.27	UTR_3_PRIME Afti DOWNSTREAM Afti & 1 other
3L	1416429	3L_1416429_SNP [dm3] 3L_1416429_SNP [dm6]	C	G	6.758e^-5	0.27	UTR_5_PRIME FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
X	2436341	X_2436341_SNP [dm3] X_2542308_SNP [dm6]	G	A	6.778e^-5	0.27	INTRON trol	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	16955374	3L_16955374_SNP [dm3] 3L_16962274_SNP [dm6]	T	A	6.779e^-5	0.27	INTRON Nc73EF
3R	15508166	3R_15508166_SNP [dm3] 3R_19682444_SNP [dm6]	C	G	6.789e^-5	0.27	INTRON Naam
3L	16949121	3L_16949121_SNP [dm3] 3L_16956021_SNP [dm6]	C	G	6.830e^-5	0.271	INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl
3L	9414210	3L_9414210_INS [dm3] 3L_9421110_INS [dm6]	T	TT	6.830e^-5	0.271	UPSTREAM CG3967 INTRON CG3967	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	23644485	3R_23644485_SNP [dm3] 3R_27818763_SNP [dm6]	C	T	6.865e^-5	0.272	INTRON CG34353
3R	19024926	3R_19024926_SNP [dm3] 3R_23199204_SNP [dm6]	G	A	6.875e^-5	0.272	INTRON cnc
3L	9301512	3L_9301512_SNP [dm3] 3L_9308412_SNP [dm6]	T	A	7.055e^-5	0.277	INTERGENIC
3L	4918902	3L_4918902_SNP [dm3] 3L_4918902_SNP [dm6]	A	C	7.059e^-5	0.277	UTR_3_PRIME Rh50 INTRON Rh50
X	5996182	X_5996182_SNP [dm3] X_6102149_SNP [dm6]	A	G	7.059e^-5	0.277	SYNONYMOUS_CODING Nep1	TF binding site mE1_TFBS_chinmo
X	8375346	X_8375346_SNP [dm3] X_8481313_SNP [dm6]	A	G	7.101e^-5	0.277	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375359	X_8375359_SNP [dm3] X_8481326_SNP [dm6]	A	T	7.101e^-5	0.277	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
2R	19210527	2R_19210527_SNP [dm3] 2R_23323004_SNP [dm6]	G	T	7.126e^-5	0.277	SYNONYMOUS_CODING CG30416 UPSTREAM CG9861
X	21208450	X_21208450_SNP [dm3] X_21337423_SNP [dm6]	T	C	7.136e^-5	0.277	INTRON tty	TF binding site BDTNP1_TFBS_dl
2R	3910728	2R_3910728_SNP [dm3] 2R_8023223_SNP [dm6]	T	C	7.141e^-5	0.277	EXON CR45267	TF binding site mE1_TFBS_HSA
X	12207372	X_12207372_SNP [dm3] X_12313339_SNP [dm6]	C	T	7.162e^-5	0.277	INTRON Ten-a
3L	23804238	3L_23804238_SNP [dm3] 3L_23811138_SNP [dm6]	A	T	7.172e^-5	0.277	INTERGENIC	transposable element FlyBase
2L	1721527	2L_1721527_SNP [dm3] 2L_1721527_SNP [dm6]	C	T	7.174e^-5	0.277	INTRON Rim2
X	8772442	X_8772442_INS [dm3] X_8878409_INS [dm6]	G	GG	7.186e^-5	0.277	INTRON Moe
X	8278504	X_8278504_DEL [dm3] X_8384471_DEL [dm6]	CTGGGTC	C	7.194e^-5	0.277	INTERGENIC
3L	17665642	3L_17665642_SNP [dm3] 3L_17672542_SNP [dm6]	C	T	7.295e^-5	0.28	INTRON CG34251
3R	20549158	3R_20549158_SNP [dm3] 3R_24723436_SNP [dm6]	T	A	7.371e^-5	0.282	UPSTREAM snoRNA:Me18S-C1280 INTRON tok
X	21093071	X_21093071_SNP [dm3] X_21222044_SNP [dm6]	A	G	7.441e^-5	0.284	INTRON CG32521
X	21201744	X_21201744_SNP [dm3] X_21330717_SNP [dm6]	C	T	7.512e^-5	0.286	UTR_3_PRIME tty DOWNSTREAM tty
3R	25434300	3R_25434300_SNP [dm3] 3R_29608578_SNP [dm6]	C	T	7.534e^-5	0.287	SYNONYMOUS_CODING Diedel2 INTRON alph
2L	12338559	2L_12338559_SNP [dm3] 2L_12338559_SNP [dm6]	T	C	7.590e^-5	0.288	UPSTREAM CG31862 INTERGENIC
X	7917525	X_7917525_SNP [dm3] X_8023492_SNP [dm6]	G	T	7.641e^-5	0.288	INTRON Tbh
3L	10820411	3L_10820411_SNP [dm3] 3L_10827311_SNP [dm6]	T	C	7.651e^-5	0.288	INTERGENIC
2R	20300734	2R_20300734_SNP [dm3] 2R_24413211_SNP [dm6]	C	A	7.680e^-5	0.288	SYNONYMOUS_CODING CG45068 UTR_5_PRIME CG45069	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	12964351	2L_12964351_SNP [dm3] 2L_12964351_SNP [dm6]	C	T	7.684e^-5	0.288	INTERGENIC
X	21093686	X_21093686_SNP [dm3] X_21222659_SNP [dm6]	G	A	7.713e^-5	0.288	INTRON CG32521
X	21093786	X_21093786_SNP [dm3] X_21222759_SNP [dm6]	C	A	7.713e^-5	0.288	INTRON CG32521	TF binding site mE1_TFBS_chinmo
3L	10828665	3L_10828665_SNP [dm3] 3L_10835565_SNP [dm6]	A	G	7.727e^-5	0.288	INTERGENIC
2L	4586924	2L_4586924_SNP [dm3] 2L_4586924_SNP [dm6]	T	C	7.778e^-5	0.288	INTRON dp
2L	4586928	2L_4586928_SNP [dm3] 2L_4586928_SNP [dm6]	A	T	7.778e^-5	0.288	INTRON dp
2L	4586935	2L_4586935_SNP [dm3] 2L_4586935_SNP [dm6]	G	A	7.778e^-5	0.288	INTRON dp
2L	4586953	2L_4586953_SNP [dm3] 2L_4586953_SNP [dm6]	A	C	7.778e^-5	0.288	INTRON dp
2L	4586963	2L_4586963_SNP [dm3] 2L_4586963_SNP [dm6]	T	G	7.778e^-5	0.288	INTRON dp
2R	3897668	2R_3897668_SNP [dm3] 2R_8010163_SNP [dm6]	T	C	7.809e^-5	0.288	UTR_3_PRIME CG14762	TF binding site mE1_TFBS_cad
3R	4883157	3R_4883157_SNP [dm3] 3R_9057435_SNP [dm6]	T	A	7.826e^-5	0.288	INTRON Kdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	14320134	3R_14320134_SNP [dm3] 3R_18494412_SNP [dm6]	G	C	7.845e^-5	0.288	INTRON fru
3L	8705401	3L_8705401_SNP [dm3] 3L_8712301_SNP [dm6]	A	C	7.876e^-5	0.288	INTERGENIC	regulatory region REDfly_CRMs
X	5144371	X_5144371_SNP [dm3] X_5250338_SNP [dm6]	C	A	7.891e^-5	0.288	INTRON CG15465 & 1 other
X	5144401	X_5144401_DEL [dm3] X_5250368_DEL [dm6]	CCTACTGGT	C	7.891e^-5	0.288	INTRON CG15465 & 1 other
X	8772366	X_8772366_SNP [dm3] X_8878333_SNP [dm6]	A	C	7.911e^-5	0.288	INTRON Moe
2L	12964387	2L_12964387_SNP [dm3] 2L_12964387_SNP [dm6]	G	C	7.928e^-5	0.288	INTERGENIC
2L	12964388	2L_12964388_SNP [dm3] 2L_12964388_SNP [dm6]	A	G	7.928e^-5	0.288	INTERGENIC
2R	16839286	2R_16839286_SNP [dm3] 2R_20951781_SNP [dm6]	A	C	7.931e^-5	0.288	DOWNSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	21190259	3R_21190259_SNP [dm3] 3R_25364537_SNP [dm6]	G	A	7.999e^-5	0.29	INTRON Fur1
3L	8701143	3L_8701143_SNP [dm3] 3L_8708043_SNP [dm6]	A	G	8.026e^-5	0.291	INTERGENIC	regulatory region REDfly_CRMs
2R	16786743	2R_16786743_SNP [dm3] 2R_20899238_SNP [dm6]	T	C	8.059e^-5	0.291	DOWNSTREAM CR43160 INTRON otp	regulatory region REDfly_CRMs
2R	12799090	2R_12799090_SNP [dm3] 2R_16911585_SNP [dm6]	C	T	8.105e^-5	0.292	INTERGENIC
3R	10139391	3R_10139391_SNP [dm3] 3R_14313669_SNP [dm6]	G	A	8.106e^-5	0.292	INTRON CG31321
2L	12338578	2L_12338578_SNP [dm3] 2L_12338578_SNP [dm6]	G	C	8.122e^-5	0.292	UPSTREAM CG31862 INTERGENIC
3L	10797692	3L_10797692_SNP [dm3] 3L_10804592_SNP [dm6]	C	T	8.134e^-5	0.292	DOWNSTREAM CR44347 EXON CR44347
3L	1962397	3L_1962397_SNP [dm3] 3L_1962397_SNP [dm6]	A	T	8.168e^-5	0.292	UPSTREAM SCOT INTRON mv
X	6323871	X_6323871_SNP [dm3] X_6429838_SNP [dm6]	T	C	8.214e^-5	0.293	INTRON CG42340
2L	11630038	2L_11630038_SNP [dm3] 2L_11630038_SNP [dm6]	G	T	8.251e^-5	0.294	INTERGENIC	TF binding site mE1_TFBS_inv
3R	23335935	3R_23335935_SNP [dm3] 3R_27510213_SNP [dm6]	A	G	8.271e^-5	0.294	INTERGENIC
3R	5403704	3R_5403704_SNP [dm3] 3R_9577982_SNP [dm6]	T	C	8.359e^-5	0.297	UPSTREAM CG8273 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	16131772	X_16131772_SNP [dm3] X_16237739_SNP [dm6]	C	A	8.380e^-5	0.297	INTERGENIC
X	20690395	X_20690395_SNP [dm3] X_20819368_SNP [dm6]	G	C	8.414e^-5	0.297	INTRON shakB
3L	4435620	3L_4435620_DEL [dm3] 3L_4435620_DEL [dm6]	AA	A	8.417e^-5	0.297	UTR_3_PRIME nAChRbeta1
2R	12811099	2R_12811099_SNP [dm3] 2R_16923594_SNP [dm6]	C	T	8.420e^-5	0.297	INTERGENIC
3L	995939	3L_995939_SNP [dm3] 3L_995939_SNP [dm6]	C	T	8.480e^-5	0.298	DOWNSTREAM trio & 1 other INTERGENIC
3L	1703457	3L_1703457_SNP [dm3] 3L_1703457_SNP [dm6]	A	T	8.516e^-5	0.299	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17665649	3L_17665649_INS [dm3] 3L_17672549_INS [dm6]	T	TGTT	8.581e^-5	0.3	INTRON CG34251
3L	1439340	3L_1439340_SNP [dm3] 3L_1439340_SNP [dm6]	C	G	8.586e^-5	0.3	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
2R	13399006	2R_13399006_SNP [dm3] 2R_17511501_SNP [dm6]	G	A	8.595e^-5	0.3	UPSTREAM CG4847 DOWNSTREAM CG34193 INTERGENIC
3L	17465478	3L_17465478_SNP [dm3] 3L_17472378_SNP [dm6]	A	C	8.649e^-5	0.301	INTRON CG7589
3R	24335000	3R_24335000_SNP [dm3] 3R_28509278_SNP [dm6]	T	A	8.662e^-5	0.301	SYNONYMOUS_CODING Dhc98D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24335021	3R_24335021_SNP [dm3] 3R_28509299_SNP [dm6]	G	A	8.662e^-5	0.301	SYNONYMOUS_CODING Dhc98D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18104329	3L_18104329_SNP [dm3] 3L_18111229_SNP [dm6]	C	T	8.679e^-5	0.301	SYNONYMOUS_CODING mus304	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	1443044	3L_1443044_SNP [dm3] 3L_1443044_SNP [dm6]	G	A	8.690e^-5	0.301	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	8770150	X_8770150_SNP [dm3] X_8876117_SNP [dm6]	A	G	8.709e^-5	0.301	UPSTREAM Moe INTRON Moe
X	8910797	X_8910797_SNP [dm3] X_9016764_SNP [dm6]	C	G	8.744e^-5	0.301	INTRON CR43836 & 1 other
3L	16895072	3L_16895072_SNP [dm3] 3L_16901972_SNP [dm6]	A	G	8.779e^-5	0.301	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_inv
3L	16895171	3L_16895171_SNP [dm3] 3L_16902071_SNP [dm6]	G	A	8.779e^-5	0.301	INTRON Lmpt	TF binding site mE1_TFBS_inv
3L	14829913	3L_14829913_SNP [dm3] 3L_14836813_SNP [dm6]	G	A	8.799e^-5	0.301	INTRON CG17839
X	21049180	X_21049180_SNP [dm3] X_21178153_SNP [dm6]	C	T	8.830e^-5	0.301	INTERGENIC
2R	12799055	2R_12799055_DEL [dm3] 2R_16911550_DEL [dm6]	TGCGCCGTGAAT...	T	8.838e^-5	0.301	INTERGENIC
X	17973335	X_17973335_SNP [dm3] X_18079302_SNP [dm6]	G	A	8.840e^-5	0.301	UTR_3_PRIME CG7536 DOWNSTREAM Dhc16F
2L	12338594	2L_12338594_SNP [dm3] 2L_12338594_SNP [dm6]	A	G	8.930e^-5	0.303	UPSTREAM CG31862 INTERGENIC
2L	19099552	2L_19099552_SNP [dm3] 2L_19099552_SNP [dm6]	T	G	8.942e^-5	0.303	INTRON Lim3
X	11356417	X_11356417_SNP [dm3] X_11462384_SNP [dm6]	G	A	8.943e^-5	0.303	INTRON CG43155
2L	4571193	2L_4571193_SNP [dm3] 2L_4571193_SNP [dm6]	T	C	8.968e^-5	0.303	INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10146344	3R_10146344_SNP [dm3] 3R_14320622_SNP [dm6]	A	G	8.983e^-5	0.303	UTR_3_PRIME Afti DOWNSTREAM pr-set7 & 1 other
X	13652349	X_13652349_SNP [dm3] X_13758316_SNP [dm6]	G	C	8.989e^-5	0.303	INTRON Rtc1
3L	9825226	3L_9825226_SNP [dm3] 3L_9832126_SNP [dm6]	C	T	9.083e^-5	0.304	UTR_3_PRIME CG43897 INTRON CG43897
3L	1691802	3L_1691802_SNP [dm3] 3L_1691802_SNP [dm6]	T	G	9.085e^-5	0.304	INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23308518	3R_23308518_SNP [dm3] 3R_27482796_SNP [dm6]	A	G	9.089e^-5	0.304	UTR_3_PRIME Cyp6a18
2L	4317499	2L_4317499_SNP [dm3] 2L_4317499_SNP [dm6]	A	C	9.100e^-5	0.304	INTRON tutl	TF binding site mE1_TFBS_HSA
3L	13138229	3L_13138229_SNP [dm3] 3L_13145129_SNP [dm6]	G	A	9.133e^-5	0.305	INTERGENIC
2L	17214261	2L_17214261_SNP [dm3] 2L_17214261_SNP [dm6]	T	A	9.205e^-5	0.305	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16977439	X_16977439_SNP [dm3] X_17083406_SNP [dm6]	A	C	9.228e^-5	0.305	DOWNSTREAM CG4955 INTRON CG8945
3R	7951446	3R_7951446_SNP [dm3] 3R_12125724_SNP [dm6]	A	T	9.318e^-5	0.305	INTRON CG4702
3L	3305388	3L_3305388_SNP [dm3] 3L_3305388_SNP [dm6]	T	C	9.341e^-5	0.305	INTRON ZnT63C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8705452	3L_8705452_SNP [dm3] 3L_8712352_SNP [dm6]	A	G	9.352e^-5	0.305	INTERGENIC	regulatory region REDfly_CRMs
2R	17142348	2R_17142348_SNP [dm3] 2R_21254843_SNP [dm6]	T	G	9.378e^-5	0.305	UPSTREAM Rgk3 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	23905643	3R_23905643_SNP [dm3] 3R_28079921_SNP [dm6]	T	C	9.397e^-5	0.305	INTRON CG34362
X	19948818	X_19948818_SNP [dm3] X_20054785_SNP [dm6]	A	G	9.428e^-5	0.305	INTRON Dop2R
3L	15024943	3L_15024943_INS [dm3] 3L_15031843_INS [dm6]	G	GT	9.455e^-5	0.305	INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5004329	3R_5004329_SNP [dm3] 3R_9178607_SNP [dm6]	C	A	9.466e^-5	0.305	NON_SYNONYMOUS_CODING CG11997 INTRON pum
3L	12262904	3L_12262904_SNP [dm3] 3L_12269804_SNP [dm6]	G	A	9.476e^-5	0.305	UTR_3_PRIME Pbgs DOWNSTREAM Pbgs & 1 other
3R	27111601	3R_27111601_SNP [dm3] 3R_31285879_SNP [dm6]	A	C	9.491e^-5	0.305	INTERGENIC
3R	27112058	3R_27112058_SNP [dm3] 3R_31286336_SNP [dm6]	C	T	9.491e^-5	0.305	INTERGENIC
3R	27112425	3R_27112425_SNP [dm3] 3R_31286703_SNP [dm6]	C	T	9.491e^-5	0.305	INTERGENIC
3R	27112454	3R_27112454_SNP [dm3] 3R_31286732_SNP [dm6]	A	T	9.491e^-5	0.305	INTERGENIC
3R	27112456	3R_27112456_SNP [dm3] 3R_31286734_SNP [dm6]	A	G	9.491e^-5	0.305	INTERGENIC
3R	27112567	3R_27112567_SNP [dm3] 3R_31286845_SNP [dm6]	C	G	9.491e^-5	0.305	INTERGENIC
2L	7341382	2L_7341382_SNP [dm3] 2L_7341382_SNP [dm6]	C	T	9.497e^-5	0.305	INTRON Wnt6	TF binding site mE1_TFBS_sbb
3L	10826390	3L_10826390_SNP [dm3] 3L_10833290_SNP [dm6]	A	T	9.512e^-5	0.305	INTERGENIC
2R	18280743	2R_18280743_SNP [dm3] 2R_22393238_SNP [dm6]	C	T	9.524e^-5	0.305	UTR_3_PRIME CG13506 DOWNSTREAM babos
3L	714218	3L_714218_SNP [dm3] 3L_714218_SNP [dm6]	G	A	9.528e^-5	0.305	EXON CR45411	TF binding site mE1_TFBS_sens
X	16987918	X_16987918_SNP [dm3] X_17093885_SNP [dm6]	A	T	9.561e^-5	0.305	INTRON CG16700 & 1 other
2R	13798070	2R_13798070_SNP [dm3] 2R_17910565_SNP [dm6]	A	C	9.577e^-5	0.305	INTRON Elk
3R	21232169	3R_21232169_SNP [dm3] 3R_25406447_SNP [dm6]	G	A	9.587e^-5	0.305	INTRON Fur1	TF binding site BDTNP1_TFBS_twi
3L	14954970	3L_14954970_SNP [dm3] 3L_14961870_SNP [dm6]	C	A	9.604e^-5	0.305	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4328548	X_4328548_SNP [dm3] X_4434515_SNP [dm6]	T	A	9.610e^-5	0.305	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl
X	5144749	X_5144749_SNP [dm3] X_5250716_SNP [dm6]	A	T	9.624e^-5	0.305	INTRON CG15465 & 1 other
3L	5238938	3L_5238938_SNP [dm3] 3L_5245838_SNP [dm6]	A	G	9.636e^-5	0.305	INTRON shep
3L	10582818	3L_10582818_SNP [dm3] 3L_10589718_SNP [dm6]	A	G	9.643e^-5	0.305	INTRON A2bp1
X	21046305	X_21046305_SNP [dm3] X_21175278_SNP [dm6]	C	A	9.648e^-5	0.305	INTERGENIC
X	14015834	X_14015834_SNP [dm3] X_14121801_SNP [dm6]	T	A	9.656e^-5	0.305	INTERGENIC
X	16966274	X_16966274_DEL [dm3] X_17072241_DEL [dm6]	TA	T	9.673e^-5	0.305	INTRON CG8949	TF binding site mE1_TFBS_cad
X	8877785	X_8877785_SNP [dm3] X_8983752_SNP [dm6]	A	G	9.697e^-5	0.305	SYNONYMOUS_CODING CG12662 INTRON rdgA & 1 other
3L	15801249	3L_15801249_SNP [dm3] 3L_15808149_SNP [dm6]	A	T	9.702e^-5	0.305	UPSTREAM CG6244 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8479883	X_8479883_SNP [dm3] X_8585850_SNP [dm6]	T	C	9.746e^-5	0.306	SYNONYMOUS_CODING CG12065
3L	14831672	3L_14831672_SNP [dm3] 3L_14838572_SNP [dm6]	G	T	9.784e^-5	0.306	INTRON CG17839
X	2185896	X_2185896_SNP [dm3] X_2291863_SNP [dm6]	T	C	9.786e^-5	0.306	INTRON CG2865	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	17158025	2L_17158025_SNP [dm3] 2L_17158025_SNP [dm6]	G	A	9.807e^-5	0.306	INTRON beat-IIIa & 1 other
3L	8413656	3L_8413656_SNP [dm3] 3L_8420556_SNP [dm6]	C	T	9.818e^-5	0.306	INTRON CG32354
X	17455471	X_17455471_INS [dm3] X_17561438_INS [dm6]	A	ATTTTTAT	9.882e^-5	0.307	UPSTREAM CG43658 INTERGENIC	TF binding site mE1_TFBS_Trl
X	17455473	X_17455473_DEL [dm3] X_17561440_DEL [dm6]	ACAT	A	9.882e^-5	0.307	UPSTREAM CG43658 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	2738245	2R_2738245_SNP [dm3] 2R_6850740_SNP [dm6]	C	A	9.913e^-5	0.308	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	24343232	3R_24343232_SNP [dm3] 3R_28517510_SNP [dm6]	C	G	9.934e^-5	0.308	INTRON Dhc98D	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
2L	5587113	2L_5587113_SNP [dm3] 2L_5587113_SNP [dm6]	A	G	9.972e^-5	0.309	DOWNSTREAM CG7251 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23410655	3R_23410655_SNP [dm3] 3R_27584933_SNP [dm6]	G	A	1.000e^-4	0.309	NON_SYNONYMOUS_CODING raps	TF binding site mE1_TFBS_chinmo
2L	19122011	2L_19122011_SNP [dm3] 2L_19122011_SNP [dm6]	A	G	1.004e^-4	0.309	UTR_3_PRIME l_2_37Cc DOWNSTREAM l_2_37Cc	regulatory region REDfly_CRMs
3L	993109	3L_993109_SNP [dm3] 3L_993109_SNP [dm6]	G	T	1.006e^-4	0.309	UTR_3_PRIME Glut1 UPSTREAM CG12038
2L	13737907	2L_13737907_SNP [dm3] 2L_13737907_SNP [dm6]	T	C	1.006e^-4	0.309	DOWNSTREAM CG31813 INTERGENIC
3L	14096907	3L_14096907_INS [dm3] 3L_14103807_INS [dm6]	A	AAGTA	1.007e^-4	0.309	UTR_3_PRIME Sox21a
3R	26743123	3R_26743123_SNP [dm3] 3R_30917401_SNP [dm6]	G	C	1.008e^-4	0.309	INTRON Ptx1	TF binding site mE1_TFBS_cad
X	20649819	X_20649819_SNP [dm3] X_20778792_SNP [dm6]	T	A	1.014e^-4	0.31	INTRON shakB
2L	14421739	2L_14421739_SNP [dm3] 2L_14421739_SNP [dm6]	T	G	1.017e^-4	0.31	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	3295724	3L_3295724_SNP [dm3] 3L_3295724_SNP [dm6]	G	A	1.018e^-4	0.31	INTRON CG12009
X	21202970	X_21202970_SNP [dm3] X_21331943_SNP [dm6]	T	G	1.019e^-4	0.31	UTR_3_PRIME tty DOWNSTREAM tty
2L	2860101	2L_2860101_DEL [dm3] 2L_2860101_DEL [dm6]	AT	A	1.021e^-4	0.31	INTRON CG2991	TF binding site mE1_TFBS_inv
2R	12948564	2R_12948564_SNP [dm3] 2R_17061059_SNP [dm6]	T	C	1.023e^-4	0.31	SYNONYMOUS_CODING CG8950	TF binding site mE1_TFBS_chinmo
2L	3569588	2L_3569588_SNP [dm3] 2L_3569588_SNP [dm6]	G	C	1.028e^-4	0.311	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	4418831	3R_4418831_INS [dm3] 3R_8593109_INS [dm6]	G	GG	1.029e^-4	0.311	INTRON 5-HT2B
3R	26127808	3R_26127808_SNP [dm3] 3R_30302086_SNP [dm6]	T	C	1.030e^-4	0.311	INTRON hdc
3R	17365642	3R_17365642_SNP [dm3] 3R_21539920_SNP [dm6]	A	G	1.032e^-4	0.311	INTERGENIC
3R	15830665	3R_15830665_SNP [dm3] 3R_20004943_SNP [dm6]	C	G	1.038e^-4	0.312	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13563101	3L_13563101_SNP [dm3] 3L_13570001_SNP [dm6]	C	A	1.039e^-4	0.312	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17046711	X_17046711_SNP [dm3] X_17152678_SNP [dm6]	C	T	1.047e^-4	0.313	NON_SYNONYMOUS_CODING xmas-1
X	17973333	X_17973333_SNP [dm3] X_18079300_SNP [dm6]	A	T	1.047e^-4	0.313	UTR_3_PRIME CG7536 DOWNSTREAM Dhc16F
X	17779690	X_17779690_DEL [dm3] X_17885657_DEL [dm6]	GG	G	1.047e^-4	0.313	DOWNSTREAM CG12985 INTRON mnb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	14384905	2R_14384905_SNP [dm3] 2R_18497400_SNP [dm6]	A	C	1.048e^-4	0.313	INTRON CG30116
3L	4222653	3L_4222653_SNP [dm3] 3L_4222653_SNP [dm6]	G	T	1.051e^-4	0.313	UTR_3_PRIME CG43367 EXON CR32252	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7778600	2L_7778600_SNP [dm3] 2L_7778600_SNP [dm6]	G	A	1.053e^-4	0.314	UPSTREAM CG7179 INTERGENIC
3R	21189773	3R_21189773_SNP [dm3] 3R_25364051_SNP [dm6]	A	C	1.055e^-4	0.314	INTRON Fur1
X	14015906	X_14015906_SNP [dm3] X_14121873_SNP [dm6]	A	T	1.059e^-4	0.314	INTERGENIC
2L	12156905	2L_12156905_SNP [dm3] 2L_12156905_SNP [dm6]	C	T	1.060e^-4	0.314	INTRON CG31760
X	5144423	X_5144423_DEL [dm3] X_5250390_DEL [dm6]	TTGG	T	1.065e^-4	0.315	INTRON CG15465 & 1 other
3L	8707994	3L_8707994_SNP [dm3] 3L_8714894_SNP [dm6]	T	C	1.071e^-4	0.316	INTERGENIC	regulatory region REDfly_CRMs
3R	11814697	3R_11814697_DEL [dm3] 3R_15988975_DEL [dm6]	GAAGATA	CT	1.073e^-4	0.316	INTRON srp & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23308580	3R_23308580_SNP [dm3] 3R_27482858_SNP [dm6]	G	A	1.076e^-4	0.316	UTR_3_PRIME Cyp6a18
3R	23308595	3R_23308595_SNP [dm3] 3R_27482873_SNP [dm6]	T	G	1.076e^-4	0.316	UTR_3_PRIME Cyp6a18
3L	8709150	3L_8709150_SNP [dm3] 3L_8716050_SNP [dm6]	G	A	1.085e^-4	0.318	INTERGENIC
3L	5906883	3L_5906883_DEL [dm3] 3L_5913783_DEL [dm6]	AA	A	1.086e^-4	0.318	INTRON CG13288
2R	3908588	2R_3908588_SNP [dm3] 2R_8021083_SNP [dm6]	C	T	1.090e^-4	0.319	EXON CR45267	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	23308566	3R_23308566_SNP [dm3] 3R_27482844_SNP [dm6]	C	G	1.095e^-4	0.319	UTR_3_PRIME Cyp6a18
3R	23308572	3R_23308572_SNP [dm3] 3R_27482850_SNP [dm6]	T	A	1.095e^-4	0.319	UTR_3_PRIME Cyp6a18
3L	7875441	3L_7875441_SNP [dm3] 3L_7882341_SNP [dm6]	A	G	1.097e^-4	0.319	INTRON CG32365
2R	12311626	2R_12311626_SNP [dm3] 2R_16424121_SNP [dm6]	G	A	1.102e^-4	0.32	SYNONYMOUS_CODING Sema-2b
3L	18841604	3L_18841604_SNP [dm3] 3L_18848504_SNP [dm6]	T	C	1.103e^-4	0.32	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	16979447	X_16979447_SNP [dm3] X_17085414_SNP [dm6]	A	G	1.110e^-4	0.321	SYNONYMOUS_CODING CG8945
3R	27214240	3R_27214240_SNP [dm3] 3R_31388518_SNP [dm6]	T	A	1.111e^-4	0.321	INTRON CG1607	TF binding site mE1_TFBS_cad
3R	5896537	3R_5896537_SNP [dm3] 3R_10070815_SNP [dm6]	G	T	1.112e^-4	0.321	UPSTREAM nerfin-2 INTERGENIC
3L	4113583	3L_4113583_SNP [dm3] 3L_4113583_SNP [dm6]	A	G	1.114e^-4	0.321	SYNONYMOUS_CODING Ack DOWNSTREAM Chd64	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13908408	3L_13908408_SNP [dm3] 3L_13915308_SNP [dm6]	C	T	1.116e^-4	0.321	INTRON Rgl
3L	15083745	3L_15083745_SNP [dm3] 3L_15090645_SNP [dm6]	A	T	1.117e^-4	0.321	UPSTREAM cp309 DOWNSTREAM CG6945 INTRON cp309	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
X	19419003	X_19419003_SNP [dm3] X_19524970_SNP [dm6]	G	A	1.119e^-4	0.321	DOWNSTREAM CoRest INTRON CoRest
3R	23521447	3R_23521447_SNP [dm3] 3R_27695725_SNP [dm6]	A	G	1.121e^-4	0.321	SYNONYMOUS_CODING CG43320 DOWNSTREAM Acp98AB & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4835771	X_4835771_SNP [dm3] X_4941738_SNP [dm6]	G	A	1.126e^-4	0.321	INTRON Ptp4E	TF binding site BDTNP1_TFBS_dl
2L	20832318	2L_20832318_SNP [dm3] 2L_20832318_SNP [dm6]	T	C	1.128e^-4	0.321	DOWNSTREAM Oseg5 INTRON CG31674
2L	12157034	2L_12157034_SNP [dm3] 2L_12157034_SNP [dm6]	T	A	1.130e^-4	0.321	INTRON CG31760
3R	10750164	3R_10750164_SNP [dm3] 3R_14924442_SNP [dm6]	C	A	1.131e^-4	0.321	UPSTREAM CR45598 INTERGENIC
3R	10750165	3R_10750165_SNP [dm3] 3R_14924443_SNP [dm6]	C	G	1.131e^-4	0.321	UPSTREAM CR45598 INTERGENIC
3R	23308529	3R_23308529_SNP [dm3] 3R_27482807_SNP [dm6]	C	A	1.131e^-4	0.321	UTR_3_PRIME Cyp6a18
3L	13420077	3L_13420077_INS [dm3] 3L_13426977_INS [dm6]	A	AG	1.138e^-4	0.322	UPSTREAM CG14105 INTERGENIC
2R	2012719	2R_2012719_SNP [dm3] 2R_6125214_SNP [dm6]	G	C	1.138e^-4	0.322	INTRON EcR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	8352293	3L_8352293_SNP [dm3] 3L_8359193_SNP [dm6]	G	T	1.151e^-4	0.323	UPSTREAM Idh INTRON Idh	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
X	21197497	X_21197497_SNP [dm3] X_21326470_SNP [dm6]	T	C	1.152e^-4	0.323	SYNONYMOUS_CODING CG1486
3L	1438972	3L_1438972_SNP [dm3] 3L_1438972_SNP [dm6]	C	A	1.153e^-4	0.323	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
3L	24054677	3L_24054677_SNP [dm3] 3L_24061577_SNP [dm6]	A	T	1.154e^-4	0.323	INTERGENIC
3R	15895216	3R_15895216_INS [dm3] 3R_20069494_INS [dm6]	G	GA	1.156e^-4	0.323	INTERGENIC
3L	924133	3L_924133_INS [dm3] 3L_924133_INS [dm6]	G	GGAG	1.157e^-4	0.323	INTRON Glut1
2L	18239300	2L_18239300_SNP [dm3] 2L_18239300_SNP [dm6]	T	A	1.157e^-4	0.323	INTRON CG42750
3R	25847533	3R_25847533_SNP [dm3] 3R_30021811_SNP [dm6]	T	C	1.158e^-4	0.323	UTR_5_PRIME Mgat2 DOWNSTREAM RpS28a INTRON Mgat2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	10825355	3L_10825355_SNP [dm3] 3L_10832255_SNP [dm6]	A	G	1.158e^-4	0.323	INTERGENIC
3L	12536058	3L_12536058_SNP [dm3] 3L_12542958_SNP [dm6]	C	T	1.164e^-4	0.324	DOWNSTREAM CR43612 INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3985624	X_3985624_SNP [dm3] X_4091591_SNP [dm6]	T	A	1.165e^-4	0.324	UTR_3_PRIME CG43689 DOWNSTREAM CG43689
X	5145512	X_5145512_SNP [dm3] X_5251479_SNP [dm6]	G	A	1.167e^-4	0.324	UTR_3_PRIME CG15465 & 1 other DOWNSTREAM rg
3R	24335997	3R_24335997_SNP [dm3] 3R_28510275_SNP [dm6]	C	A	1.168e^-4	0.324	SYNONYMOUS_CODING Dhc98D	TF binding site mE1_TFBS_cad
3R	24642518	3R_24642518_SNP [dm3] 3R_28816796_SNP [dm6]	A	G	1.171e^-4	0.325	SPLICE_SITE_REGION CG1646 SYNONYMOUS_CODING CG1646 UTR_3_PRIME CG1646 DOWNSTREAM CG1523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21461707	X_21461707_SNP [dm3] X_21590680_SNP [dm6]	T	C	1.173e^-4	0.325	INTERGENIC
3R	1337261	3R_1337261_SNP [dm3] 3R_5511539_SNP [dm6]	G	C	1.184e^-4	0.327	SYNONYMOUS_CODING Nmdar1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21461732	X_21461732_SNP [dm3] X_21590705_SNP [dm6]	A	T	1.185e^-4	0.327	INTERGENIC
X	13766645	X_13766645_SNP [dm3] X_13872612_SNP [dm6]	A	G	1.188e^-4	0.327	INTRON mamo
2R	3744950	2R_3744950_SNP [dm3] 2R_7857445_SNP [dm6]	A	G	1.189e^-4	0.327	INTRON Dgk	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15011771	3L_15011771_SNP [dm3] 3L_15018671_SNP [dm6]	A	G	1.192e^-4	0.327	INTRON Sytbeta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15011785	3L_15011785_SNP [dm3] 3L_15018685_SNP [dm6]	C	T	1.192e^-4	0.327	SPLICE_SITE_REGION Sytbeta INTRON Sytbeta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13800304	X_13800304_DEL [dm3] X_13906271_DEL [dm6]	AACA	A	1.193e^-4	0.327	INTRON mamo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3227082	2L_3227082_DEL [dm3] 2L_3227082_DEL [dm6]	GCTTG	G	1.198e^-4	0.328	INTERGENIC
2L	12156909	2L_12156909_SNP [dm3] 2L_12156909_SNP [dm6]	T	C	1.208e^-4	0.33	INTRON CG31760
3L	15772903	3L_15772903_SNP [dm3] 3L_15779803_SNP [dm6]	C	G	1.210e^-4	0.33	INTERGENIC
2R	18320030	2R_18320030_SNP [dm3] 2R_22432525_SNP [dm6]	C	A	1.212e^-4	0.33	INTERGENIC
2L	8533626	2L_8533626_SNP [dm3] 2L_8533626_SNP [dm6]	G	T	1.217e^-4	0.331	INTRON CG17834	TF binding site mE1_TFBS_cad
3L	4259170	3L_4259170_INS [dm3] 3L_4259170_INS [dm6]	T	TG	1.217e^-4	0.331	UPSTREAM CG1309 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14305893	3R_14305893_SNP [dm3] 3R_18480171_SNP [dm6]	C	G	1.221e^-4	0.331	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	13907236	3L_13907236_SNP [dm3] 3L_13914136_SNP [dm6]	G	A	1.223e^-4	0.331	SYNONYMOUS_CODING Rgl INTRON Rgl
3L	1695091	3L_1695091_SNP [dm3] 3L_1695091_SNP [dm6]	G	A	1.225e^-4	0.331	SYNONYMOUS_CODING CG12011 INTRON CG7991
3R	19268150	3R_19268150_SNP [dm3] 3R_23442428_SNP [dm6]	A	C	1.240e^-4	0.334	INTRON CG4374
2R	17420803	2R_17420803_SNP [dm3] 2R_21533298_SNP [dm6]	C	T	1.240e^-4	0.334	INTRON Egfr
2L	12111143	2L_12111143_SNP [dm3] 2L_12111143_SNP [dm6]	A	T	1.241e^-4	0.334	UTR_5_PRIME Phae2 DOWNSTREAM Phae1	TF binding site mE1_TFBS_cad
2R	11886138	2R_11886138_SNP [dm3] 2R_15998633_SNP [dm6]	A	C	1.247e^-4	0.335	INTRON ATPCL
3L	4022952	3L_4022952_SNP [dm3] 3L_4022952_SNP [dm6]	G	T	1.249e^-4	0.335	UTR_3_PRIME Mul1 DOWNSTREAM CG11594
3R	24006847	3R_24006847_SNP [dm3] 3R_28181125_SNP [dm6]	C	T	1.266e^-4	0.339	INTRON CG34354
3L	5913129	3L_5913129_SNP [dm3] 3L_5920029_SNP [dm6]	G	A	1.269e^-4	0.34	SYNONYMOUS_CODING CG10483 DOWNSTREAM CR45167	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13237757	2L_13237757_SNP [dm3] 2L_13237757_SNP [dm6]	C	G	1.271e^-4	0.34	INTRON CG5867
3L	12536132	3L_12536132_SNP [dm3] 3L_12543032_SNP [dm6]	A	G	1.277e^-4	0.341	DOWNSTREAM CR43612 INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10456634	3L_10456634_SNP [dm3] 3L_10463534_SNP [dm6]	C	T	1.278e^-4	0.341	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	15504348	3R_15504348_SNP [dm3] 3R_19678626_SNP [dm6]	C	T	1.285e^-4	0.342	INTRON Naam
X	21202971	X_21202971_SNP [dm3] X_21331944_SNP [dm6]	G	T	1.287e^-4	0.342	UTR_3_PRIME tty DOWNSTREAM tty
3L	10820828	3L_10820828_SNP [dm3] 3L_10827728_SNP [dm6]	T	G	1.289e^-4	0.342	INTERGENIC
3R	23308582	3R_23308582_SNP [dm3] 3R_27482860_SNP [dm6]	A	C	1.299e^-4	0.343	UTR_3_PRIME Cyp6a18
3R	23308615	3R_23308615_INS [dm3] 3R_27482893_INS [dm6]	T	TTCATTTT	1.299e^-4	0.343	UTR_3_PRIME Cyp6a18
X	22415090	X_22415090_SNP [dm3] X_23013254_SNP [dm6]	G	A	1.299e^-4	0.343	UTR_5_PRIME Rab21 UPSTREAM CG13865 & 1 other INTRON Rab21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	8720974	3L_8720974_SNP [dm3] 3L_8727874_SNP [dm6]	A	G	1.300e^-4	0.343	UPSTREAM Cp15 DOWNSTREAM Cp18 INTERGENIC
2L	17214214	2L_17214214_SNP [dm3] 2L_17214214_SNP [dm6]	T	A	1.316e^-4	0.347	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12808850	3L_12808850_SNP [dm3] 3L_12815750_SNP [dm6]	T	A	1.327e^-4	0.349	INTRON CG42588
3R	19535746	3R_19535746_SNP [dm3] 3R_23710024_SNP [dm6]	G	C	1.328e^-4	0.349	UPSTREAM CG10301 INTERGENIC
2L	6271262	2L_6271262_SNP [dm3] 2L_6271262_SNP [dm6]	G	T	1.332e^-4	0.349	INTRON Ddr EXON CR42735
3R	8610481	3R_8610481_SNP [dm3] 3R_12784759_SNP [dm6]	T	C	1.336e^-4	0.349	INTERGENIC
3R	8610532	3R_8610532_SNP [dm3] 3R_12784810_SNP [dm6]	C	T	1.336e^-4	0.349	INTERGENIC
3L	1439776	3L_1439776_DEL [dm3] 3L_1439776_DEL [dm6]	ATAG	A	1.341e^-4	0.349	INTRON Ptp61F
3L	3287450	3L_3287450_SNP [dm3] 3L_3287450_SNP [dm6]	T	C	1.342e^-4	0.349	SYNONYMOUS_CODING CG12017	TF binding site mE1_TFBS_cad
2L	12110011	2L_12110011_SNP [dm3] 2L_12110011_SNP [dm6]	C	G	1.344e^-4	0.349	SYNONYMOUS_CODING Phae1 UPSTREAM Rab6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10139388	3R_10139388_SNP [dm3] 3R_14313666_SNP [dm6]	A	G	1.345e^-4	0.349	INTRON CG31321
3L	15222155	3L_15222155_SNP [dm3] 3L_15229055_SNP [dm6]	A	C	1.345e^-4	0.349	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9618335	X_9618335_SNP [dm3] X_9724302_SNP [dm6]	G	A	1.349e^-4	0.349	INTERGENIC
2L	1231116	2L_1231116_SNP [dm3] 2L_1231116_SNP [dm6]	A	G	1.349e^-4	0.349	INTERGENIC
2R	2741615	2R_2741615_SNP [dm3] 2R_6854110_SNP [dm6]	G	T	1.350e^-4	0.349	INTERGENIC
2R	2742043	2R_2742043_SNP [dm3] 2R_6854538_SNP [dm6]	A	T	1.350e^-4	0.349	INTERGENIC
3R	13826197	3R_13826197_SNP [dm3] 3R_18000475_SNP [dm6]	G	A	1.351e^-4	0.349	INTRON cpo
2L	13422203	2L_13422203_SNP [dm3] 2L_13422203_SNP [dm6]	C	T	1.354e^-4	0.349	INTRON CG42784
X	8375339	X_8375339_SNP [dm3] X_8481306_SNP [dm6]	A	C	1.358e^-4	0.349	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
2L	1347497	2L_1347497_SNP [dm3] 2L_1347497_SNP [dm6]	A	T	1.359e^-4	0.349	INTERGENIC
X	17015868	X_17015868_SNP [dm3] X_17121835_SNP [dm6]	A	C	1.360e^-4	0.349	INTRON CG5004
3L	4460001	3L_4460001_SNP [dm3] 3L_4460001_SNP [dm6]	G	A	1.362e^-4	0.349	NON_SYNONYMOUS_CODING CG15022 DOWNSTREAM CG15023	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13714235	2L_13714235_SNP [dm3] 2L_13714235_SNP [dm6]	C	T	1.375e^-4	0.352	UTR_5_PRIME CG31814 INTRON CG31814
2R	14345609	2R_14345609_SNP [dm3] 2R_18458104_SNP [dm6]	A	G	1.378e^-4	0.352	UTR_3_PRIME CG30116 INTRON CG30116
2R	1996324	2R_1996324_SNP [dm3] 2R_6108819_SNP [dm6]	T	C	1.386e^-4	0.354	INTRON EcR
3L	7302770	3L_7302770_SNP [dm3] 3L_7309670_SNP [dm6]	A	T	1.393e^-4	0.355	INTRON unc-13-4A
X	16131732	X_16131732_SNP [dm3] X_16237699_SNP [dm6]	G	A	1.400e^-4	0.355	INTERGENIC
X	9115336	X_9115336_SNP [dm3] X_9221303_SNP [dm6]	G	A	1.400e^-4	0.355	SYNONYMOUS_CODING t
X	14071199	X_14071199_SNP [dm3] X_14177166_SNP [dm6]	T	C	1.403e^-4	0.355	SYNONYMOUS_CODING CG11581	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14071200	X_14071200_SNP [dm3] X_14177167_SNP [dm6]	T	C	1.403e^-4	0.355	NON_SYNONYMOUS_CODING CG11581	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24335733	3R_24335733_SNP [dm3] 3R_28510011_SNP [dm6]	C	A	1.406e^-4	0.355	SPLICE_SITE_REGION Dhc98D INTRON Dhc98D	TF binding site mE1_TFBS_cad
2L	1624767	2L_1624767_SNP [dm3] 2L_1624767_SNP [dm6]	G	A	1.406e^-4	0.355	EXON CR44603
3R	7247142	3R_7247142_SNP [dm3] 3R_11421420_SNP [dm6]	G	A	1.408e^-4	0.355	UPSTREAM CG5270 INTRON ninaG	TF binding site mE1_TFBS_cad
2L	9846638	2L_9846638_SNP [dm3] 2L_9846638_SNP [dm6]	T	A	1.408e^-4	0.355	INTRON nAChRalpha6
3L	3305303	3L_3305303_SNP [dm3] 3L_3305303_SNP [dm6]	A	T	1.410e^-4	0.355	INTRON ZnT63C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	8730307	X_8730307_SNP [dm3] X_8836274_SNP [dm6]	C	G	1.414e^-4	0.355	EXON CR45537
3R	8619235	3R_8619235_SNP [dm3] 3R_12793513_SNP [dm6]	C	T	1.418e^-4	0.356	INTERGENIC
2R	11886172	2R_11886172_SNP [dm3] 2R_15998667_SNP [dm6]	G	A	1.418e^-4	0.356	INTRON ATPCL
X	21251244	X_21251244_SNP [dm3] X_21380217_SNP [dm6]	A	G	1.431e^-4	0.358	INTRON slgA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1277242	3L_1277242_SNP [dm3] 3L_1277242_SNP [dm6]	C	A	1.440e^-4	0.36	INTRON CG32333
X	2436357	X_2436357_SNP [dm3] X_2542324_SNP [dm6]	G	A	1.440e^-4	0.36	INTRON trol	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	7401390	3L_7401390_SNP [dm3] 3L_7408290_SNP [dm6]	T	C	1.450e^-4	0.36	DOWNSTREAM CR44525 INTERGENIC
X	16664526	X_16664526_INS [dm3] X_16770493_INS [dm6]	A	AA	1.453e^-4	0.36	INTRON if
3R	6345511	3R_6345511_SNP [dm3] 3R_10519789_SNP [dm6]	G	A	1.454e^-4	0.36	INTRON hth
3R	13357557	3R_13357557_SNP [dm3] 3R_17531835_SNP [dm6]	T	A	1.454e^-4	0.36	DOWNSTREAM CG5823 INTERGENIC
3R	13357591	3R_13357591_SNP [dm3] 3R_17531869_SNP [dm6]	A	G	1.454e^-4	0.36	DOWNSTREAM CG5823 INTERGENIC
3L	14946087	3L_14946087_SNP [dm3] 3L_14952987_SNP [dm6]	G	A	1.454e^-4	0.36	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22248581	3R_22248581_SNP [dm3] 3R_26422859_SNP [dm6]	G	A	1.455e^-4	0.36	INTERGENIC
3L	23283319	3L_23283319_SNP [dm3] 3L_23290219_SNP [dm6]	G	A	1.459e^-4	0.36	INTERGENIC	TF binding site mE1_TFBS_inv
3R	14947523	3R_14947523_INS [dm3] 3R_19121801_INS [dm6]	A	AA	1.466e^-4	0.362	INTRON CG6040
2L	17158772	2L_17158772_SNP [dm3] 2L_17158772_SNP [dm6]	A	G	1.470e^-4	0.362	INTRON beat-IIIa & 1 other
X	16445453	X_16445453_DEL [dm3] X_16551420_DEL [dm6]	TGG	T	1.473e^-4	0.362	INTRON Arp2
3L	16347913	3L_16347913_SNP [dm3] 3L_16354813_SNP [dm6]	G	T	1.475e^-4	0.362	UTR_3_PRIME CG45057 UPSTREAM Pdh DOWNSTREAM CG45057
X	6144328	X_6144328_SNP [dm3] X_6250295_SNP [dm6]	T	C	1.477e^-4	0.362	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9422865	3R_9422865_SNP [dm3] 3R_13597143_SNP [dm6]	C	T	1.483e^-4	0.363	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20602142	3R_20602142_SNP [dm3] 3R_24776420_SNP [dm6]	A	C	1.484e^-4	0.363	INTRON CG42331	TF binding site mE1_TFBS_cad
3R	20602161	3R_20602161_DEL [dm3] 3R_24776439_DEL [dm6]	AA	A	1.484e^-4	0.363	INTRON CG42331	TF binding site mE1_TFBS_cad
3R	14244094	3R_14244094_SNP [dm3] 3R_18418372_SNP [dm6]	G	T	1.494e^-4	0.365	DOWNSTREAM fru INTRON fru
X	21506321	X_21506321_SNP [dm3] X_21635294_SNP [dm6]	A	T	1.499e^-4	0.366	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	21201743	X_21201743_SNP [dm3] X_21330716_SNP [dm6]	A	T	1.505e^-4	0.367	UTR_3_PRIME tty DOWNSTREAM tty
3L	15379692	3L_15379692_SNP [dm3] 3L_15386592_SNP [dm6]	T	G	1.512e^-4	0.368	INTERGENIC
2R	20298016	2R_20298016_SNP [dm3] 2R_24410493_SNP [dm6]	T	A	1.526e^-4	0.371	START_GAINED SerT UTR_5_PRIME SerT
2L	7384405	2L_7384405_SNP [dm3] 2L_7384405_SNP [dm6]	A	T	1.528e^-4	0.371	DOWNSTREAM CG5149 & 1 other INTERGENIC
2L	5884450	2L_5884450_SNP [dm3] 2L_5884450_SNP [dm6]	A	T	1.530e^-4	0.371	UPSTREAM CG43185 DOWNSTREAM CG44574 INTRON Sfp26Ac
2L	17254569	2L_17254569_SNP [dm3] 2L_17254569_SNP [dm6]	T	G	1.532e^-4	0.371	INTRON beat-IIIc
2L	13714236	2L_13714236_SNP [dm3] 2L_13714236_SNP [dm6]	T	G	1.543e^-4	0.373	UTR_5_PRIME CG31814 INTRON CG31814
3L	16640321	3L_16640321_SNP [dm3] 3L_16647221_SNP [dm6]	G	A	1.552e^-4	0.375	UTR_5_PRIME Abl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7709650	3L_7709650_SNP [dm3] 3L_7716550_SNP [dm6]	G	A	1.554e^-4	0.375	UPSTREAM Ank2 INTRON CG32373 & 1 other
X	21251248	X_21251248_SNP [dm3] X_21380221_SNP [dm6]	C	T	1.557e^-4	0.375	INTRON slgA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	21199366	X_21199366_SNP [dm3] X_21328339_SNP [dm6]	T	A	1.559e^-4	0.375	DOWNSTREAM tty & 1 other INTERGENIC
3L	7275522	3L_7275522_SNP [dm3] 3L_7282422_SNP [dm6]	G	A	1.565e^-4	0.376	INTRON unc-13-4A
3L	6331505	3L_6331505_SNP [dm3] 3L_6338405_SNP [dm6]	T	A	1.570e^-4	0.376	INTRON CG13300	TF binding site BDTNP1_TFBS_twi
2R	12811761	2R_12811761_DEL [dm3] 2R_16924256_DEL [dm6]	GCTAAA	G	1.571e^-4	0.376	UPSTREAM Pkc53E INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23308672	3R_23308672_SNP [dm3] 3R_27482950_SNP [dm6]	C	T	1.572e^-4	0.376	DOWNSTREAM Cyp6a18 INTERGENIC
X	21896778	X_21896778_SNP [dm3] X_22494942_SNP [dm6]	A	T	1.572e^-4	0.376	INTRON l_1_G0196	transposable element FlyBase
2L	12156912	2L_12156912_SNP [dm3] 2L_12156912_SNP [dm6]	C	A	1.575e^-4	0.376	INTRON CG31760
3L	9587466	3L_9587466_DEL [dm3] 3L_9594366_DEL [dm6]	ATCATGG	T	1.581e^-4	0.376	UTR_3_PRIME CG42673 INTRON CG42673
3L	12091240	3L_12091240_SNP [dm3] 3L_12098140_SNP [dm6]	T	C	1.581e^-4	0.376	INTERGENIC
3L	2603070	3L_2603070_SNP [dm3] 3L_2603070_SNP [dm6]	G	A	1.582e^-4	0.376	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7812486	3L_7812486_SNP [dm3] 3L_7819386_SNP [dm6]	A	T	1.584e^-4	0.376	INTRON Pdp1
3L	15012944	3L_15012944_SNP [dm3] 3L_15019844_SNP [dm6]	A	G	1.591e^-4	0.377	INTRON Sytbeta
X	8563205	X_8563205_SNP [dm3] X_8669172_SNP [dm6]	G	A	1.596e^-4	0.378	INTERGENIC
3L	16864412	3L_16864412_SNP [dm3] 3L_16871312_SNP [dm6]	C	T	1.599e^-4	0.378	INTRON Lmpt
2R	6874106	2R_6874106_SNP [dm3] 2R_10986601_SNP [dm6]	G	A	1.599e^-4	0.378	INTRON luna
3L	7812401	3L_7812401_DEL [dm3] 3L_7819301_DEL [dm6]	GTG	G	1.603e^-4	0.378	INTRON Pdp1	TF binding site BDTNP1_TFBS_z
3L	1421853	3L_1421853_SNP [dm3] 3L_1421853_SNP [dm6]	G	A	1.604e^-4	0.378	UTR_3_PRIME CG9173 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5400356	3L_5400356_SNP [dm3] 3L_5407256_SNP [dm6]	C	G	1.608e^-4	0.378	INTERGENIC
3L	1951076	3L_1951076_SNP [dm3] 3L_1951076_SNP [dm6]	A	G	1.611e^-4	0.378	NON_SYNONYMOUS_CODING mv DOWNSTREAM Cnb	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	15126170	2R_15126170_SNP [dm3] 2R_19238665_SNP [dm6]	C	T	1.613e^-4	0.378	INTRON cora
2L	3062184	2L_3062184_SNP [dm3] 2L_3062184_SNP [dm6]	C	T	1.621e^-4	0.378	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6087730	3L_6087730_DEL [dm3] 3L_6094630_DEL [dm6]	TC	T	1.625e^-4	0.378	UTR_5_PRIME CG10467 UPSTREAM loj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6087735	3L_6087735_INS [dm3] 3L_6094635_INS [dm6]	A	AT	1.625e^-4	0.378	UTR_5_PRIME CG10467 UPSTREAM loj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	15108419	2R_15108419_SNP [dm3] 2R_19220914_SNP [dm6]	T	C	1.627e^-4	0.378	INTRON hppy
3L	10886517	3L_10886517_SNP [dm3] 3L_10893417_SNP [dm6]	G	A	1.630e^-4	0.378	UPSTREAM Cpr67Fb DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
3L	12032518	3L_12032518_INS [dm3] 3L_12039418_INS [dm6]	C	CTTTC	1.633e^-4	0.378	INTRON rols	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19124044	2L_19124044_DEL [dm3] 2L_19124044_DEL [dm6]	CTC	C	1.634e^-4	0.378	UTR_3_PRIME l_2_37Cb UPSTREAM l_2_37Cc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	1682260	3L_1682260_SNP [dm3] 3L_1682260_SNP [dm6]	A	G	1.642e^-4	0.378	INTRON CG7991
3R	11724401	3R_11724401_DEL [dm3] 3R_15898679_DEL [dm6]	CGAC	C	1.642e^-4	0.378	INTRON glob1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15109130	2L_15109130_SNP [dm3] 2L_15109130_SNP [dm6]	G	T	1.644e^-4	0.378	UPSTREAM CG15269 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	2738467	2R_2738467_SNP [dm3] 2R_6850962_SNP [dm6]	T	G	1.648e^-4	0.378	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25145529	3R_25145529_SNP [dm3] 3R_29319807_SNP [dm6]	T	A	1.648e^-4	0.378	UPSTREAM Cnx99A INTERGENIC
X	8375349	X_8375349_SNP [dm3] X_8481316_SNP [dm6]	A	T	1.648e^-4	0.378	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375351	X_8375351_SNP [dm3] X_8481318_SNP [dm6]	A	T	1.648e^-4	0.378	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375352	X_8375352_SNP [dm3] X_8481319_SNP [dm6]	A	T	1.648e^-4	0.378	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375354	X_8375354_SNP [dm3] X_8481321_SNP [dm6]	A	C	1.648e^-4	0.378	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375355	X_8375355_SNP [dm3] X_8481322_SNP [dm6]	C	T	1.648e^-4	0.378	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375360	X_8375360_DEL [dm3] X_8481327_DEL [dm6]	CAATA	C	1.648e^-4	0.378	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
3L	22397025	3L_22397025_SNP [dm3] 3L_22403925_SNP [dm6]	A	G	1.649e^-4	0.378	INTRON Ten-m	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1347167	2L_1347167_SNP [dm3] 2L_1347167_SNP [dm6]	T	C	1.651e^-4	0.378	UPSTREAM CR45006 INTERGENIC
X	21203477	X_21203477_INS [dm3] X_21332450_INS [dm6]	G	GGGCAGTAG	1.653e^-4	0.378	DOWNSTREAM tty INTRON tty
2R	7533519	2R_7533519_DEL [dm3] 2R_11646014_DEL [dm6]	CTGCTGC	C	1.656e^-4	0.378	CODON_DELETION CG9003 UPSTREAM CG9003 INTRON CG9003	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	4972357	3L_4972357_SNP [dm3] 3L_4972357_SNP [dm6]	C	T	1.659e^-4	0.378	INTRON Con
3L	2408668	3L_2408668_SNP [dm3] 3L_2408668_SNP [dm6]	A	C	1.663e^-4	0.379	UTR_3_PRIME CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5144352	X_5144352_SNP [dm3] X_5250319_SNP [dm6]	T	A	1.669e^-4	0.379	INTRON CG15465 & 1 other
X	5144618	X_5144618_SNP [dm3] X_5250585_SNP [dm6]	T	C	1.669e^-4	0.379	INTRON CG15465 & 1 other
X	5144625	X_5144625_SNP [dm3] X_5250592_SNP [dm6]	G	T	1.669e^-4	0.379	INTRON CG15465 & 1 other
2R	18280719	2R_18280719_SNP [dm3] 2R_22393214_SNP [dm6]	C	A	1.684e^-4	0.381	UTR_3_PRIME CG13506 DOWNSTREAM babos
2L	10479636	2L_10479636_DEL [dm3] 2L_10479636_DEL [dm6]	CTTGC	T	1.686e^-4	0.381	INTRON RluA-2
2L	10536458	2L_10536458_SNP [dm3] 2L_10536458_SNP [dm6]	C	T	1.687e^-4	0.381	UTR_3_PRIME CG18302
3L	1703481	3L_1703481_SNP [dm3] 3L_1703481_SNP [dm6]	A	G	1.689e^-4	0.381	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21207018	X_21207018_SNP [dm3] X_21335991_SNP [dm6]	C	A	1.691e^-4	0.381	SPLICE_SITE_REGION tty INTRON tty	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19530790	3R_19530790_SNP [dm3] 3R_23705068_SNP [dm6]	C	T	1.695e^-4	0.382	SYNONYMOUS_CODING CG31414 DOWNSTREAM CG31413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13357270	3R_13357270_SNP [dm3] 3R_17531548_SNP [dm6]	C	A	1.696e^-4	0.382	DOWNSTREAM CG5823 INTERGENIC
3L	12058380	3L_12058380_SNP [dm3] 3L_12065280_SNP [dm6]	T	A	1.705e^-4	0.383	UPSTREAM rols INTERGENIC
3R	22248541	3R_22248541_SNP [dm3] 3R_26422819_SNP [dm6]	C	G	1.707e^-4	0.383	INTERGENIC
3L	1960092	3L_1960092_SNP [dm3] 3L_1960092_SNP [dm6]	T	C	1.717e^-4	0.383	SYNONYMOUS_CODING mv
3R	5404414	3R_5404414_SNP [dm3] 3R_9578692_SNP [dm6]	A	G	1.718e^-4	0.383	SYNONYMOUS_CODING CG8273 UPSTREAM Kap-alpha3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16274682	3R_16274682_SNP [dm3] 3R_20448960_SNP [dm6]	G	T	1.719e^-4	0.383	INTRON Gfrl
3R	16593278	3R_16593278_DEL [dm3] 3R_20767556_DEL [dm6]	CACATCGGCATTCGTGTCTG...	C	1.724e^-4	0.383	INTRON Syp
X	8375340	X_8375340_SNP [dm3] X_8481307_SNP [dm6]	C	T	1.727e^-4	0.383	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
3L	17664444	3L_17664444_SNP [dm3] 3L_17671344_SNP [dm6]	G	T	1.727e^-4	0.383	UPSTREAM CG34251 INTERGENIC
3R	20031887	3R_20031887_DEL [dm3] 3R_24206165_DEL [dm6]	AA	A	1.729e^-4	0.383	INTRON twin
3L	12807133	3L_12807133_SNP [dm3] 3L_12814033_SNP [dm6]	T	C	1.731e^-4	0.383	UPSTREAM CG42588 & 1 other DOWNSTREAM Sap130 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12807144	3L_12807144_SNP [dm3] 3L_12814044_SNP [dm6]	C	T	1.731e^-4	0.383	UPSTREAM CG42588 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12807594	3L_12807594_SNP [dm3] 3L_12814494_SNP [dm6]	G	T	1.731e^-4	0.383	START_GAINED CG42588 UTR_5_PRIME CG42588 UPSTREAM CG10754	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3619885	2L_3619885_SNP [dm3] 2L_3619885_SNP [dm6]	T	A	1.732e^-4	0.383	SYNONYMOUS_CODING Dot	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	19432431	3R_19432431_SNP [dm3] 3R_23606709_SNP [dm6]	G	A	1.733e^-4	0.383	UTR_3_PRIME CG31145 DOWNSTREAM CG31145
3L	8848857	3L_8848857_SNP [dm3] 3L_8855757_SNP [dm6]	T	C	1.733e^-4	0.383	INTRON dally
3L	17687372	3L_17687372_SNP [dm3] 3L_17694272_SNP [dm6]	G	A	1.735e^-4	0.383	INTRON Ccn
2R	8676247	2R_8676247_SNP [dm3] 2R_12788742_SNP [dm6]	T	A	1.740e^-4	0.383	INTRON sca EXON CR45137
3R	21232078	3R_21232078_SNP [dm3] 3R_25406356_SNP [dm6]	A	G	1.741e^-4	0.383	INTRON Fur1	TF binding site BDTNP1_TFBS_twi
X	14015755	X_14015755_SNP [dm3] X_14121722_SNP [dm6]	G	A	1.741e^-4	0.383	INTERGENIC
2L	7332902	2L_7332902_SNP [dm3] 2L_7332902_SNP [dm6]	T	G	1.744e^-4	0.383	UPSTREAM Wnt6 INTERGENIC
3L	8720994	3L_8720994_SNP [dm3] 3L_8727894_SNP [dm6]	T	C	1.744e^-4	0.383	UPSTREAM Cp15 DOWNSTREAM Cp18 INTERGENIC
X	21463218	X_21463218_DEL [dm3] X_21592191_DEL [dm6]	CTCCATGCCCCATGACCCAT...	C	1.746e^-4	0.383	INTERGENIC
3L	3556645	3L_3556645_SNP [dm3] 3L_3556645_SNP [dm6]	C	T	1.754e^-4	0.384	INTRON Eip63E	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	22525900	3R_22525900_SNP [dm3] 3R_26700178_SNP [dm6]	A	C	1.760e^-4	0.384	SYNONYMOUS_CODING amon
3L	10828995	3L_10828995_SNP [dm3] 3L_10835895_SNP [dm6]	A	G	1.761e^-4	0.384	INTERGENIC
2L	16241630	2L_16241630_SNP [dm3] 2L_16241630_SNP [dm6]	T	C	1.762e^-4	0.384	UPSTREAM CG42818 DOWNSTREAM CG42817 INTERGENIC
2R	14075233	2R_14075233_SNP [dm3] 2R_18187728_SNP [dm6]	T	G	1.763e^-4	0.384	NON_SYNONYMOUS_CODING CG14499 INTRON CG33958
2L	17322755	2L_17322755_SNP [dm3] 2L_17322755_SNP [dm6]	C	T	1.764e^-4	0.384	INTERGENIC
3R	25454411	3R_25454411_SNP [dm3] 3R_29628689_SNP [dm6]	C	G	1.781e^-4	0.387	INTERGENIC
X	4493461	X_4493461_SNP [dm3] X_4599428_SNP [dm6]	T	C	1.787e^-4	0.388	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
X	20647599	X_20647599_SNP [dm3] X_20776572_SNP [dm6]	T	G	1.790e^-4	0.388	INTRON shakB
3L	17469961	3L_17469961_SNP [dm3] 3L_17476861_SNP [dm6]	C	T	1.801e^-4	0.389	UTR_3_PRIME CG34250 DOWNSTREAM CG7580 & 2 others	TF binding site mE1_TFBS_sens
3L	9283510	3L_9283510_SNP [dm3] 3L_9290410_SNP [dm6]	T	C	1.804e^-4	0.389	INTERGENIC
3L	8679571	3L_8679571_SNP [dm3] 3L_8686471_SNP [dm6]	C	G	1.804e^-4	0.389	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10828895	3L_10828895_INS [dm3] 3L_10835795_INS [dm6]	A	AA	1.807e^-4	0.389	INTERGENIC
X	18634447	X_18634447_SNP [dm3] X_18740414_SNP [dm6]	G	A	1.808e^-4	0.389	UPSTREAM CG6873 INTERGENIC
X	18636278	X_18636278_SNP [dm3] X_18742245_SNP [dm6]	C	A	1.808e^-4	0.389	INTERGENIC
3L	5528276	3L_5528276_SNP [dm3] 3L_5535176_SNP [dm6]	G	A	1.815e^-4	0.39	SYNONYMOUS_CODING CG13285
3L	7870956	3L_7870956_SNP [dm3] 3L_7877856_SNP [dm6]	A	T	1.817e^-4	0.39	INTRON CG32365	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10830893	3L_10830893_SNP [dm3] 3L_10837793_SNP [dm6]	A	T	1.829e^-4	0.392	INTERGENIC	enhancer mE1_CBP_Enhancers
X	5326613	X_5326613_SNP [dm3] X_5432580_SNP [dm6]	T	C	1.829e^-4	0.392	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC
3L	12980515	3L_12980515_SNP [dm3] 3L_12987415_SNP [dm6]	C	T	1.842e^-4	0.394	INTERGENIC
3R	23521450	3R_23521450_SNP [dm3] 3R_27695728_SNP [dm6]	T	G	1.843e^-4	0.394	SYNONYMOUS_CODING CG43320 DOWNSTREAM Acp98AB & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17677892	3L_17677892_SNP [dm3] 3L_17684792_SNP [dm6]	A	T	1.847e^-4	0.395	INTERGENIC
3L	10826657	3L_10826657_SNP [dm3] 3L_10833557_SNP [dm6]	G	A	1.851e^-4	0.395	INTERGENIC
3L	1633473	3L_1633473_INS [dm3] 3L_1633473_INS [dm6]	G	GAGG	1.858e^-4	0.396	CODON_INSERTION nSyb UTR_3_PRIME nSyb INTRON nSyb
2L	5298399	2L_5298399_INS [dm3] 2L_5298399_INS [dm6]	A	AA	1.867e^-4	0.397	UPSTREAM CR45730 INTRON vri
3L	16275881	3L_16275881_SNP [dm3] 3L_16282781_SNP [dm6]	T	G	1.868e^-4	0.397	UPSTREAM CG13049 DOWNSTREAM CG13048 INTERGENIC
3R	11813813	3R_11813813_SNP [dm3] 3R_15988091_SNP [dm6]	C	T	1.870e^-4	0.397	INTRON srp & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12852120	3L_12852120_SNP [dm3] 3L_12859020_SNP [dm6]	T	C	1.875e^-4	0.397	NON_SYNONYMOUS_CODING CG32107
X	19084095	X_19084095_SNP [dm3] X_19190062_SNP [dm6]	G	A	1.877e^-4	0.397	NON_SYNONYMOUS_CODING Mec2 UPSTREAM HP1D3csd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	21328428	X_21328428_SNP [dm3] X_21457401_SNP [dm6]	A	G	1.877e^-4	0.397	INTRON CG42343	TF binding site BDTNP1_TFBS_dl
3L	9582812	3L_9582812_SNP [dm3] 3L_9589712_SNP [dm6]	C	A	1.879e^-4	0.397	INTRON CG42673
X	5144415	X_5144415_SNP [dm3] X_5250382_SNP [dm6]	G	T	1.883e^-4	0.397	INTRON CG15465 & 1 other
2L	9123446	2L_9123446_SNP [dm3] 2L_9123446_SNP [dm6]	C	G	1.884e^-4	0.397	UPSTREAM CR44615 INTERGENIC
2R	18279632	2R_18279632_SNP [dm3] 2R_22392127_SNP [dm6]	G	A	1.887e^-4	0.398	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2399091	2L_2399091_SNP [dm3] 2L_2399091_SNP [dm6]	C	A	1.889e^-4	0.398	INTRON VGlut
2L	13264604	2L_13264604_SNP [dm3] 2L_13264604_SNP [dm6]	A	G	1.891e^-4	0.398	DOWNSTREAM CG31848 INTRON CG44085
X	19443380	X_19443380_SNP [dm3] X_19549347_SNP [dm6]	A	G	1.898e^-4	0.398	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3570755	2L_3570755_SNP [dm3] 2L_3570755_SNP [dm6]	T	C	1.900e^-4	0.398	INTERGENIC	TF binding site mE1_TFBS_sens
3R	11281743	3R_11281743_SNP [dm3] 3R_15456021_SNP [dm6]	A	G	1.900e^-4	0.398	INTRON AdamTS-A
2L	8030628	2L_8030628_SNP [dm3] 2L_8030628_SNP [dm6]	T	G	1.902e^-4	0.398	UPSTREAM Cka DOWNSTREAM baf INTRON CG7367	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6761454	3L_6761454_SNP [dm3] 3L_6768354_SNP [dm6]	T	A	1.911e^-4	0.399	INTERGENIC	TF binding site mE1_TFBS_cad
3R	7115772	3R_7115772_SNP [dm3] 3R_11290050_SNP [dm6]	G	A	1.913e^-4	0.399	INTRON CR31386
3R	24997936	3R_24997936_DEL [dm3] 3R_29172214_DEL [dm6]	TCG	T	1.921e^-4	0.401	UTR_3_PRIME CG14509 DOWNSTREAM CG11898	TF binding site mE1_TFBS_inv
3R	13357680	3R_13357680_SNP [dm3] 3R_17531958_SNP [dm6]	A	C	1.935e^-4	0.403	DOWNSTREAM CG5823 INTERGENIC
X	5144396	X_5144396_SNP [dm3] X_5250363_SNP [dm6]	G	A	1.937e^-4	0.403	INTRON CG15465 & 1 other
2L	12424475	2L_12424475_INS [dm3] 2L_12424475_INS [dm6]	T	TT	1.938e^-4	0.403	UPSTREAM CG6405 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
X	11171427	X_11171427_SNP [dm3] X_11277394_SNP [dm6]	T	A	1.939e^-4	0.403	INTRON CG44422
3L	3296027	3L_3296027_SNP [dm3] 3L_3296027_SNP [dm6]	G	T	1.950e^-4	0.403	NON_SYNONYMOUS_CODING CG12009 UTR_5_PRIME CG12009	TF binding site mE1_TFBS_cad
3L	10885668	3L_10885668_SNP [dm3] 3L_10892568_SNP [dm6]	A	G	1.950e^-4	0.403	DOWNSTREAM Cpr67Fa2 INTERGENIC
2R	2835140	2R_2835140_SNP [dm3] 2R_6947635_SNP [dm6]	T	C	1.951e^-4	0.403	UPSTREAM tRNA:K2:42Ea DOWNSTREAM tRNA:K2:42Eb & 1 other INTRON mim & 1 other
3R	24226418	3R_24226418_SNP [dm3] 3R_28400696_SNP [dm6]	A	G	1.951e^-4	0.403	INTERGENIC	TF binding site mE1_TFBS_inv
3L	5717361	3L_5717361_DEL [dm3] 3L_5724261_DEL [dm6]	TT	T	1.957e^-4	0.404	INTRON sif
3R	24175962	3R_24175962_SNP [dm3] 3R_28350240_SNP [dm6]	C	A	1.959e^-4	0.404	INTERGENIC
3L	5208659	3L_5208659_SNP [dm3] 3L_5215559_SNP [dm6]	G	A	1.960e^-4	0.404	INTRON shep
3L	6708934	3L_6708934_SNP [dm3] 3L_6715834_SNP [dm6]	G	T	1.962e^-4	0.404	SPLICE_SITE_REGION ple SYNONYMOUS_CODING ple	TF binding site mE1_TFBS_chinmo
X	9026275	X_9026275_SNP [dm3] X_9132242_SNP [dm6]	A	T	1.966e^-4	0.404	INTRON fend	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	10823315	3L_10823315_SNP [dm3] 3L_10830215_SNP [dm6]	A	C	1.967e^-4	0.404	INTERGENIC
3L	4962204	3L_4962204_INS [dm3] 3L_4962204_INS [dm6]	T	TT	1.970e^-4	0.404	INTRON Con
2L	16241659	2L_16241659_SNP [dm3] 2L_16241659_SNP [dm6]	C	A	1.977e^-4	0.404	UPSTREAM CG42818 DOWNSTREAM CG42817 INTERGENIC
2L	13714173	2L_13714173_SNP [dm3] 2L_13714173_SNP [dm6]	A	C	1.982e^-4	0.404	SPLICE_SITE_REGION CG31814 UTR_5_PRIME CG31814 INTRON CG31814
3R	27513354	3R_27513354_SNP [dm3] 3R_31687632_SNP [dm6]	C	A	1.986e^-4	0.404	DOWNSTREAM CR45564 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	24577718	3R_24577718_SNP [dm3] 3R_28751996_SNP [dm6]	C	T	1.988e^-4	0.404	UPSTREAM CG10000 INTERGENIC
3R	14798114	3R_14798114_SNP [dm3] 3R_18972392_SNP [dm6]	C	T	1.993e^-4	0.404	NON_SYNONYMOUS_CODING CG42613 UTR_3_PRIME CG43732	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16188669	2L_16188669_SNP [dm3] 2L_16188669_SNP [dm6]	A	C	1.997e^-4	0.404	INTRON Ca-alpha1D
X	21200252	X_21200252_SNP [dm3] X_21329225_SNP [dm6]	G	C	2.001e^-4	0.404	UTR_3_PRIME tty
3R	8124587	3R_8124587_SNP [dm3] 3R_12298865_SNP [dm6]	G	T	2.005e^-4	0.404	INTRON svp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16755784	2R_16755784_SNP [dm3] 2R_20868279_SNP [dm6]	T	C	2.011e^-4	0.404	DOWNSTREAM IM4 INTERGENIC
3R	19460696	3R_19460696_SNP [dm3] 3R_23634974_SNP [dm6]	C	T	2.012e^-4	0.404	INTRON CG31145
3L	1440632	3L_1440632_SNP [dm3] 3L_1440632_SNP [dm6]	C	T	2.016e^-4	0.404	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2003548	X_2003548_SNP [dm3] X_2109515_SNP [dm6]	A	G	2.017e^-4	0.404	SYNONYMOUS_CODING csw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26694429	3R_26694429_SNP [dm3] 3R_30868707_SNP [dm6]	A	T	2.017e^-4	0.404	UTR_3_PRIME Cpr100A	TF binding site mE1_TFBS_cad
3R	26694430	3R_26694430_SNP [dm3] 3R_30868708_SNP [dm6]	T	A	2.017e^-4	0.404	UTR_3_PRIME Cpr100A	TF binding site mE1_TFBS_cad
3L	17166927	3L_17166927_SNP [dm3] 3L_17173827_SNP [dm6]	A	G	2.023e^-4	0.404	INTRON Rbp6
3L	10820126	3L_10820126_SNP [dm3] 3L_10827026_SNP [dm6]	C	T	2.025e^-4	0.404	INTERGENIC
3L	7870860	3L_7870860_SNP [dm3] 3L_7877760_SNP [dm6]	G	C	2.027e^-4	0.404	INTRON CG32365	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9869059	3R_9869059_SNP [dm3] 3R_14043337_SNP [dm6]	G	A	2.027e^-4	0.404	INTERGENIC
3L	8413671	3L_8413671_SNP [dm3] 3L_8420571_SNP [dm6]	G	A	2.038e^-4	0.404	INTRON CG32354
3R	26454065	3R_26454065_SNP [dm3] 3R_30628343_SNP [dm6]	C	T	2.040e^-4	0.404	SYNONYMOUS_CODING CG2267
3R	26454071	3R_26454071_SNP [dm3] 3R_30628349_SNP [dm6]	G	C	2.040e^-4	0.404	SYNONYMOUS_CODING CG2267
3R	23763077	3R_23763077_SNP [dm3] 3R_27937355_SNP [dm6]	G	C	2.042e^-4	0.404	UPSTREAM CG5514 INTRON Mes-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12144976	3L_12144976_SNP [dm3] 3L_12151876_SNP [dm6]	C	T	2.049e^-4	0.404	SYNONYMOUS_CODING Nrx-IV INTRON Nrx-IV	TF binding site BDTNP1_TFBS_bcd
3R	10737963	3R_10737963_SNP [dm3] 3R_14912241_SNP [dm6]	T	A	2.050e^-4	0.404	INTERGENIC
3R	10742310	3R_10742310_DEL [dm3] 3R_14916588_DEL [dm6]	TGTGCTG	T	2.050e^-4	0.404	INTERGENIC
3R	10744833	3R_10744833_SNP [dm3] 3R_14919111_SNP [dm6]	C	A	2.050e^-4	0.404	SYNONYMOUS_CODING Sdr
3R	10744834	3R_10744834_SNP [dm3] 3R_14919112_SNP [dm6]	A	C	2.050e^-4	0.404	NON_SYNONYMOUS_CODING Sdr
3R	10746789	3R_10746789_SNP [dm3] 3R_14921067_SNP [dm6]	T	C	2.050e^-4	0.404	SYNONYMOUS_CODING Sdr
3R	10748502	3R_10748502_SNP [dm3] 3R_14922780_SNP [dm6]	C	G	2.050e^-4	0.404	UTR_3_PRIME Sdr DOWNSTREAM CR45598 & 1 other
3R	10749580	3R_10749580_SNP [dm3] 3R_14923858_SNP [dm6]	C	T	2.050e^-4	0.404	UPSTREAM CR45598 DOWNSTREAM Sdr INTERGENIC
3R	10749743	3R_10749743_SNP [dm3] 3R_14924021_SNP [dm6]	C	T	2.050e^-4	0.404	UPSTREAM CR45598 DOWNSTREAM Sdr INTERGENIC
3R	10750061	3R_10750061_SNP [dm3] 3R_14924339_SNP [dm6]	C	T	2.050e^-4	0.404	UPSTREAM CR45598 INTERGENIC
3R	10750076	3R_10750076_SNP [dm3] 3R_14924354_SNP [dm6]	A	C	2.050e^-4	0.404	UPSTREAM CR45598 INTERGENIC
3R	10753015	3R_10753015_DEL [dm3] 3R_14927293_DEL [dm6]	TGCATAAAATTAATGCATAT...	T	2.050e^-4	0.404	INTERGENIC
2R	19502307	2R_19502307_SNP [dm3] 2R_23614784_SNP [dm6]	T	C	2.052e^-4	0.404	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
3R	8616879	3R_8616879_SNP [dm3] 3R_12791157_SNP [dm6]	T	A	2.053e^-4	0.404	INTERGENIC
3L	11442422	3L_11442422_SNP [dm3] 3L_11449322_SNP [dm6]	A	C	2.057e^-4	0.404	INTERGENIC
X	8375342	X_8375342_SNP [dm3] X_8481309_SNP [dm6]	A	T	2.059e^-4	0.404	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375345	X_8375345_SNP [dm3] X_8481312_SNP [dm6]	C	T	2.059e^-4	0.404	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
3L	12601510	3L_12601510_SNP [dm3] 3L_12608410_SNP [dm6]	G	A	2.063e^-4	0.404	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4660701	2L_4660701_SNP [dm3] 2L_4660701_SNP [dm6]	A	C	2.063e^-4	0.404	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12807222	3L_12807222_DEL [dm3] 3L_12814122_DEL [dm6]	ATAGT	A	2.068e^-4	0.404	UPSTREAM CG42588 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12807229	3L_12807229_SNP [dm3] 3L_12814129_SNP [dm6]	A	G	2.068e^-4	0.404	UPSTREAM CG42588 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4076882	2R_4076882_SNP [dm3] 2R_8189377_SNP [dm6]	G	T	2.068e^-4	0.404	INTRON LRP1
X	17046817	X_17046817_SNP [dm3] X_17152784_SNP [dm6]	G	C	2.069e^-4	0.404	NON_SYNONYMOUS_CODING xmas-1
3L	10830626	3L_10830626_SNP [dm3] 3L_10837526_SNP [dm6]	G	A	2.070e^-4	0.404	INTERGENIC	enhancer mE1_CBP_Enhancers
X	11839294	X_11839294_SNP [dm3] X_11945261_SNP [dm6]	A	T	2.070e^-4	0.404	INTRON cac
3R	10646530	3R_10646530_SNP [dm3] 3R_14820808_SNP [dm6]	G	A	2.075e^-4	0.404	SYNONYMOUS_CODING btsz INTRON btsz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2459651	X_2459651_SNP [dm3] X_2565618_SNP [dm6]	A	C	2.083e^-4	0.404	INTRON Pdfr
3R	24348186	3R_24348186_SNP [dm3] 3R_28522464_SNP [dm6]	G	A	2.083e^-4	0.404	INTRON Ppn
3R	26697518	3R_26697518_SNP [dm3] 3R_30871796_SNP [dm6]	T	C	2.086e^-4	0.404	SYNONYMOUS_CODING CG15545	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12068573	3L_12068573_SNP [dm3] 3L_12075473_SNP [dm6]	A	T	2.088e^-4	0.404	INTRON Sema-5c
2L	17322775	2L_17322775_SNP [dm3] 2L_17322775_SNP [dm6]	A	G	2.088e^-4	0.404	INTERGENIC
3L	18606809	3L_18606809_SNP [dm3] 3L_18613709_SNP [dm6]	G	A	2.089e^-4	0.404	NON_SYNONYMOUS_CODING CG32199 INTRON CG4174 & 1 other
2L	12156962	2L_12156962_SNP [dm3] 2L_12156962_SNP [dm6]	T	A	2.091e^-4	0.404	INTRON CG31760
2L	12156963	2L_12156963_SNP [dm3] 2L_12156963_SNP [dm6]	T	A	2.091e^-4	0.404	INTRON CG31760
2L	1045127	2L_1045127_SNP [dm3] 2L_1045127_SNP [dm6]	C	A	2.096e^-4	0.404	INTRON IA-2
3L	1962390	3L_1962390_SNP [dm3] 3L_1962390_SNP [dm6]	G	A	2.101e^-4	0.405	UPSTREAM SCOT INTRON mv
X	16845958	X_16845958_SNP [dm3] X_16951925_SNP [dm6]	T	G	2.104e^-4	0.405	NON_SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15330540	3L_15330540_SNP [dm3] 3L_15337440_SNP [dm6]	T	C	2.105e^-4	0.405	SYNONYMOUS_CODING Toll-6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11801055	X_11801055_DEL [dm3] X_11907022_DEL [dm6]	AA	A	2.105e^-4	0.405	UPSTREAM CG43156 DOWNSTREAM pot INTERGENIC	TF binding site mE1_TFBS_zfh1
2L	13737575	2L_13737575_SNP [dm3] 2L_13737575_SNP [dm6]	C	G	2.110e^-4	0.405	DOWNSTREAM CG31813 INTERGENIC
X	19182089	X_19182089_SNP [dm3] X_19288056_SNP [dm6]	A	G	2.110e^-4	0.405	INTRON CG8034	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11333360	3R_11333360_SNP [dm3] 3R_15507638_SNP [dm6]	C	T	2.116e^-4	0.405	DOWNSTREAM CG44014 INTERGENIC
X	20863864	X_20863864_SNP [dm3] X_20992837_SNP [dm6]	C	T	2.117e^-4	0.405	INTERGENIC
3L	12091216	3L_12091216_SNP [dm3] 3L_12098116_SNP [dm6]	C	T	2.127e^-4	0.407	INTERGENIC
X	19425758	X_19425758_DEL [dm3] X_19531725_DEL [dm6]	TTGAGT	T	2.130e^-4	0.407	UTR_5_PRIME CG12231 DOWNSTREAM CG32532 & 1 other	TF binding site mE1_TFBS_cad
2R	9337941	2R_9337941_SNP [dm3] 2R_13450436_SNP [dm6]	C	T	2.136e^-4	0.407	UTR_5_PRIME cnn UPSTREAM cbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	1384732	X_1384732_SNP [dm3] X_1490699_SNP [dm6]	G	A	2.136e^-4	0.407	SPLICE_SITE_REGION Nmdar2 INTRON inc & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	1384735	X_1384735_SNP [dm3] X_1490702_SNP [dm6]	A	G	2.136e^-4	0.407	INTRON inc & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14995564	3L_14995564_SNP [dm3] 3L_15002464_SNP [dm6]	A	G	2.145e^-4	0.408	SYNONYMOUS_CODING Reck	TF binding site mE1_TFBS_cad
3L	12677746	3L_12677746_SNP [dm3] 3L_12684646_SNP [dm6]	A	C	2.147e^-4	0.408	INTERGENIC
2L	13009111	2L_13009111_INS [dm3] 2L_13009111_INS [dm6]	T	TTTGTTCGCGAT...	2.150e^-4	0.408	INTRON Tor	TF binding site mE1_TFBS_cad
3R	25998670	3R_25998670_SNP [dm3] 3R_30172948_SNP [dm6]	A	T	2.151e^-4	0.408	UTR_3_PRIME Mlc2
3L	11438065	3L_11438065_SNP [dm3] 3L_11444965_SNP [dm6]	C	A	2.153e^-4	0.408	UPSTREAM CG7557 EXON CR44549
2R	19474407	2R_19474407_SNP [dm3] 2R_23586884_SNP [dm6]	C	T	2.156e^-4	0.408	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	19322515	2R_19322515_SNP [dm3] 2R_23434992_SNP [dm6]	G	A	2.166e^-4	0.408	INTERGENIC
3L	6448817	3L_6448817_SNP [dm3] 3L_6455717_SNP [dm6]	T	C	2.172e^-4	0.408	INTRON CG42747
3L	13420177	3L_13420177_DEL [dm3] 3L_13427077_DEL [dm6]	ATTATAAGTTATTA...	A	2.178e^-4	0.408	UPSTREAM CG14105 INTERGENIC
3R	22001905	3R_22001905_SNP [dm3] 3R_26176183_SNP [dm6]	G	A	2.181e^-4	0.408	INTRON CG31323
2R	9338325	2R_9338325_SNP [dm3] 2R_13450820_SNP [dm6]	T	C	2.183e^-4	0.408	UTR_5_PRIME cbs UPSTREAM cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	3792223	3L_3792223_SNP [dm3] 3L_3792223_SNP [dm6]	C	T	2.186e^-4	0.408	DOWNSTREAM CG32266 INTRON CG32264
3L	3913802	3L_3913802_SNP [dm3] 3L_3913802_SNP [dm6]	G	A	2.186e^-4	0.408	INTRON Eip63F-1
3R	25242436	3R_25242436_SNP [dm3] 3R_29416714_SNP [dm6]	A	G	2.187e^-4	0.408	INTRON Ptp99A
3L	11027913	3L_11027913_SNP [dm3] 3L_11034813_SNP [dm6]	G	T	2.188e^-4	0.408	EXON CR44547	TF binding site BDTNP1_TFBS_da
2R	9133974	2R_9133974_SNP [dm3] 2R_13246469_SNP [dm6]	A	G	2.189e^-4	0.408	UPSTREAM Mp20 INTERGENIC
X	8427743	X_8427743_SNP [dm3] X_8533710_SNP [dm6]	T	A	2.191e^-4	0.408	INTRON Nrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21060784	X_21060784_SNP [dm3] X_21189757_SNP [dm6]	A	C	2.194e^-4	0.408	DOWNSTREAM CR45506 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	21199384	X_21199384_SNP [dm3] X_21328357_SNP [dm6]	T	A	2.195e^-4	0.408	DOWNSTREAM tty & 1 other INTERGENIC
3L	2152151	3L_2152151_SNP [dm3] 3L_2152151_SNP [dm6]	A	G	2.196e^-4	0.408	UPSTREAM zormin INTERGENIC	TF binding site mE1_TFBS_Trl
3L	12601757	3L_12601757_SNP [dm3] 3L_12608657_SNP [dm6]	G	T	2.198e^-4	0.408	UPSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1258378	3L_1258378_SNP [dm3] 3L_1258378_SNP [dm6]	T	C	2.198e^-4	0.408	INTRON CG9134
2R	2605392	2R_2605392_SNP [dm3] 2R_6717887_SNP [dm6]	C	G	2.200e^-4	0.408	UPSTREAM Zip42C.1 DOWNSTREAM Zip42C.2 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

Microbiota_OTU060 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results