DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.165e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.04094
In_3R_P	0.01641

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	5.0295	0.0809

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3018 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	16906318	X_16906318_SNP [dm3] X_17012285_SNP [dm6]	C	A	3.538e^-9	0.004	INTRON CG45002
2L	10451494	2L_10451494_SNP [dm3] 2L_10451494_SNP [dm6]	G	T	4.999e^-9	0.004	SYNONYMOUS_CODING ppk10
2L	6157038	2L_6157038_SNP [dm3] 2L_6157038_SNP [dm6]	T	A	6.181e^-9	0.004	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	26429289	3R_26429289_SNP [dm3] 3R_30603567_SNP [dm6]	C	T	1.863e^-8	0.008	NON_SYNONYMOUS_CODING CG31021 UPSTREAM PH4alphaNE3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18956108	2L_18956108_SNP [dm3] 2L_18956108_SNP [dm6]	C	T	2.552e^-8	0.008	NON_SYNONYMOUS_CODING CG10623
3R	26432015	3R_26432015_SNP [dm3] 3R_30606293_SNP [dm6]	G	T	2.797e^-8	0.008	NON_SYNONYMOUS_CODING CG31016 DOWNSTREAM PH4alphaNE3
2L	6157034	2L_6157034_SNP [dm3] 2L_6157034_SNP [dm6]	T	C	3.009e^-8	0.008	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	12870503	2R_12870503_SNP [dm3] 2R_16982998_SNP [dm6]	T	C	3.362e^-8	0.008	INTRON Cbp53E
X	16906294	X_16906294_SNP [dm3] X_17012261_SNP [dm6]	G	A	2.288e^-7	0.047	INTRON CG45002
2L	12640743	2L_12640743_SNP [dm3] 2L_12640743_SNP [dm6]	C	A	3.471e^-7	0.063	INTRON Ref2	TF binding site mE1_TFBS_cad
2L	20840511	2L_20840511_SNP [dm3] 2L_20840511_SNP [dm6]	G	C	3.702e^-7	0.063	UPSTREAM CG31676 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	6450619	2L_6450619_SNP [dm3] 2L_6450619_SNP [dm6]	C	A	7.879e^-7	0.079	INTRON retm	TF binding site mE1_TFBS_cad
3L	5551117	3L_5551117_SNP [dm3] 3L_5558017_SNP [dm6]	A	G	8.300e^-7	0.079	INTERGENIC	TF binding site mE1_TFBS_inv
3L	8796080	3L_8796080_SNP [dm3] 3L_8802980_SNP [dm6]	C	T	8.724e^-7	0.079	SYNONYMOUS_CODING CG34426 UPSTREAM CG13311 DOWNSTREAM CG32023	TF binding site mE1_TFBS_sens
2L	8362576	2L_8362576_SNP [dm3] 2L_8362576_SNP [dm6]	T	C	8.920e^-7	0.079	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	4038473	3R_4038473_SNP [dm3] 3R_8212751_SNP [dm6]	C	T	8.973e^-7	0.079	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26430121	3R_26430121_SNP [dm3] 3R_30604399_SNP [dm6]	T	A	9.066e^-7	0.079	SPLICE_SITE_REGION PH4alphaNE3 DOWNSTREAM CG31021 INTRON PH4alphaNE3
3R	15292026	3R_15292026_SNP [dm3] 3R_19466304_SNP [dm6]	C	T	9.455e^-7	0.079	INTRON Dys
3L	5359500	3L_5359500_SNP [dm3] 3L_5366400_SNP [dm6]	G	T	9.739e^-7	0.079	UPSTREAM Membrin & 1 other DOWNSTREAM CG10635 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA
3L	5359510	3L_5359510_SNP [dm3] 3L_5366410_SNP [dm6]	T	C	9.739e^-7	0.079	UPSTREAM Membrin & 1 other DOWNSTREAM CG10635 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA
3L	4395182	3L_4395182_SNP [dm3] 3L_4395182_SNP [dm6]	A	T	1.022e^-6	0.079	INTRON slow
3L	2838180	3L_2838180_SNP [dm3] 3L_2838180_SNP [dm6]	C	A	1.025e^-6	0.079	INTRON CG43444
3R	15280107	3R_15280107_DEL [dm3] 3R_19454385_DEL [dm6]	TC	T	1.186e^-6	0.079	INTRON CG31221
3R	10832807	3R_10832807_SNP [dm3] 3R_15007085_SNP [dm6]	G	T	1.212e^-6	0.079	INTERGENIC
3R	20905458	3R_20905458_SNP [dm3] 3R_25079736_SNP [dm6]	A	T	1.253e^-6	0.079	INTERGENIC
3L	3854315	3L_3854315_SNP [dm3] 3L_3854315_SNP [dm6]	T	A	1.278e^-6	0.079	INTRON Awh	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12870497	2R_12870497_SNP [dm3] 2R_16982992_SNP [dm6]	G	A	1.290e^-6	0.079	INTRON Cbp53E
3L	11053488	3L_11053488_SNP [dm3] 3L_11060388_SNP [dm6]	T	A	1.318e^-6	0.079	DOWNSTREAM CG7888 INTRON CG6321
2L	6454786	2L_6454786_SNP [dm3] 2L_6454786_SNP [dm6]	G	T	1.327e^-6	0.079	INTRON retm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
4	216261	4_216261_SNP [dm3] 4_195635_SNP [dm6]	C	G	1.330e^-6	0.079	EXON CR44441
2R	13483176	2R_13483176_SNP [dm3] 2R_17595671_SNP [dm6]	A	C	1.331e^-6	0.079	NON_SYNONYMOUS_CODING CG11423 INTRON lack
3L	9839120	3L_9839120_SNP [dm3] 3L_9846020_SNP [dm6]	G	A	1.450e^-6	0.079	INTRON RasGAP1	TF binding site BDTNP1_TFBS_dl
4	121889	4_121889_SNP [dm3] 4_101263_SNP [dm6]	C	A	1.457e^-6	0.079	UTR_3_PRIME pan INTRON pan	transposable element FlyBase
3L	5359558	3L_5359558_SNP [dm3] 3L_5366458_SNP [dm6]	A	C	1.469e^-6	0.079	UTR_5_PRIME Membrin UPSTREAM Uev1A DOWNSTREAM CG10635	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA
3R	22154942	3R_22154942_SNP [dm3] 3R_26329220_SNP [dm6]	T	A	1.488e^-6	0.079	INTRON CG33970
2L	6718240	2L_6718240_SNP [dm3] 2L_6718240_SNP [dm6]	A	T	1.527e^-6	0.079	NON_SYNONYMOUS_CODING Aatf	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6817445	2L_6817445_INS [dm3] 2L_6817445_INS [dm6]	A	AA	1.592e^-6	0.079	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13483175	2R_13483175_SNP [dm3] 2R_17595670_SNP [dm6]	G	A	1.623e^-6	0.079	SYNONYMOUS_CODING CG11423 INTRON lack
3L	2835610	3L_2835610_SNP [dm3] 3L_2835610_SNP [dm6]	G	T	1.701e^-6	0.081	INTRON CG43444
3R	22886906	3R_22886906_SNP [dm3] 3R_27061184_SNP [dm6]	A	G	1.784e^-6	0.083	SPLICE_SITE_REGION Nep5 INTRON Nep5
3R	26433919	3R_26433919_SNP [dm3] 3R_30608197_SNP [dm6]	C	T	1.885e^-6	0.084	UTR_3_PRIME CG31016 DOWNSTREAM CG31016
3R	26433920	3R_26433920_SNP [dm3] 3R_30608198_SNP [dm6]	C	T	1.885e^-6	0.084	UTR_3_PRIME CG31016 DOWNSTREAM CG31016
X	16336970	X_16336970_SNP [dm3] X_16442937_SNP [dm6]	A	G	1.943e^-6	0.084	INTRON rngo	TF binding site BDTNP1_TFBS_dl
3L	3572496	3L_3572496_SNP [dm3] 3L_3572496_SNP [dm6]	T	G	2.049e^-6	0.087	INTRON Eip63E
2R	12870593	2R_12870593_SNP [dm3] 2R_16983088_SNP [dm6]	T	C	2.353e^-6	0.092	INTRON Cbp53E
3R	26429170	3R_26429170_SNP [dm3] 3R_30603448_SNP [dm6]	G	T	2.558e^-6	0.092	NON_SYNONYMOUS_CODING CG31021 UPSTREAM PH4alphaNE3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26429813	3R_26429813_INS [dm3] 3R_30604091_INS [dm6]	G	TCTTTA	2.558e^-6	0.092	UPSTREAM PH4alphaNE3 DOWNSTREAM CG31021 INTERGENIC
3R	26430076	3R_26430076_DEL [dm3] 3R_30604354_DEL [dm6]	CAA	TT	2.558e^-6	0.092	DOWNSTREAM CG31021 INTRON PH4alphaNE3
3R	26430097	3R_26430097_SNP [dm3] 3R_30604375_SNP [dm6]	C	A	2.558e^-6	0.092	DOWNSTREAM CG31021 INTRON PH4alphaNE3
3R	26430207	3R_26430207_SNP [dm3] 3R_30604485_SNP [dm6]	T	C	2.558e^-6	0.092	SYNONYMOUS_CODING PH4alphaNE3 DOWNSTREAM CG31021
2R	8435171	2R_8435171_DEL [dm3] 2R_12547666_DEL [dm6]	TT	T	2.578e^-6	0.092	INTRON fra
X	10202931	X_10202931_SNP [dm3] X_10308898_SNP [dm6]	C	G	2.580e^-6	0.092	UTR_5_PRIME alpha-Man-I INTRON alpha-Man-I	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	12640744	2L_12640744_SNP [dm3] 2L_12640744_SNP [dm6]	C	A	2.765e^-6	0.092	INTRON Ref2	TF binding site mE1_TFBS_cad
3L	10930028	3L_10930028_SNP [dm3] 3L_10936928_SNP [dm6]	G	C	2.769e^-6	0.092	INTERGENIC
2L	12640849	2L_12640849_SNP [dm3] 2L_12640849_SNP [dm6]	A	G	2.788e^-6	0.092	INTRON Ref2
3R	22883537	3R_22883537_SNP [dm3] 3R_27057815_SNP [dm6]	A	T	2.971e^-6	0.092	UTR_3_PRIME RYa-R DOWNSTREAM Nep5 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22885484	3R_22885484_SNP [dm3] 3R_27059762_SNP [dm6]	G	C	2.971e^-6	0.092	SYNONYMOUS_CODING Nep5
3R	22885505	3R_22885505_SNP [dm3] 3R_27059783_SNP [dm6]	T	C	2.971e^-6	0.092	SYNONYMOUS_CODING Nep5
X	16906299	X_16906299_SNP [dm3] X_17012266_SNP [dm6]	A	T	2.972e^-6	0.092	INTRON CG45002
2L	2925901	2L_2925901_SNP [dm3] 2L_2925901_SNP [dm6]	G	A	3.059e^-6	0.092	INTRON lilli
2L	8371471	2L_8371471_SNP [dm3] 2L_8371471_SNP [dm6]	T	C	3.077e^-6	0.092	UPSTREAM CR45341 INTRON CG17292
3R	26429490	3R_26429490_SNP [dm3] 3R_30603768_SNP [dm6]	G	C	3.156e^-6	0.092	NON_SYNONYMOUS_CODING CG31021 UPSTREAM PH4alphaNE3	TF binding site mE1_TFBS_HSA
3R	26430090	3R_26430090_SNP [dm3] 3R_30604368_SNP [dm6]	G	C	3.156e^-6	0.092	DOWNSTREAM CG31021 INTRON PH4alphaNE3
3R	26431706	3R_26431706_SNP [dm3] 3R_30605984_SNP [dm6]	C	G	3.156e^-6	0.092	UTR_3_PRIME PH4alphaNE3 UPSTREAM CG31016
3R	26432390	3R_26432390_SNP [dm3] 3R_30606668_SNP [dm6]	G	A	3.245e^-6	0.093	NON_SYNONYMOUS_CODING CG31016 DOWNSTREAM PH4alphaNE3
3L	2838330	3L_2838330_SNP [dm3] 3L_2838330_SNP [dm6]	C	A	3.373e^-6	0.093	INTRON CG43444
X	16414137	X_16414137_DEL [dm3] X_16520104_DEL [dm6]	AGATTTGCTAAA...	A	3.393e^-6	0.093	INTRON para
2L	6717559	2L_6717559_SNP [dm3] 2L_6717559_SNP [dm6]	C	T	3.403e^-6	0.093	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	22884932	3R_22884932_SNP [dm3] 3R_27059210_SNP [dm6]	C	A	3.589e^-6	0.097	INTRON Nep5
2L	10946006	2L_10946006_SNP [dm3] 2L_10946006_SNP [dm6]	A	C	3.824e^-6	0.101	INTRON dpr2
2L	7990409	2L_7990409_DEL [dm3] 2L_7990409_DEL [dm6]	AGATATCGAGAAACCCATTG...	A	3.918e^-6	0.101	DOWNSTREAM pes INTRON pes	TF binding site mE1_TFBS_inv
3R	26769990	3R_26769990_SNP [dm3] 3R_30944268_SNP [dm6]	G	A	4.000e^-6	0.101	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12079046	3R_12079046_SNP [dm3] 3R_16253324_SNP [dm6]	T	C	4.010e^-6	0.101	INTRON tara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18807253	3R_18807253_SNP [dm3] 3R_22981531_SNP [dm6]	A	C	4.020e^-6	0.101	UTR_3_PRIME Nha2
3R	26430095	3R_26430095_SNP [dm3] 3R_30604373_SNP [dm6]	C	T	4.124e^-6	0.102	DOWNSTREAM CG31021 INTRON PH4alphaNE3
3R	4311420	3R_4311420_SNP [dm3] 3R_8485698_SNP [dm6]	G	A	4.183e^-6	0.102	INTERGENIC
2L	11288419	2L_11288419_SNP [dm3] 2L_11288419_SNP [dm6]	A	G	4.218e^-6	0.102	INTERGENIC
3L	18254696	3L_18254696_SNP [dm3] 3L_18261596_SNP [dm6]	A	T	4.340e^-6	0.103	INTERGENIC
2R	7130028	2R_7130028_SNP [dm3] 2R_11242523_SNP [dm6]	T	C	4.420e^-6	0.103	UPSTREAM Listericin INTERGENIC
3L	5200636	3L_5200636_SNP [dm3] 3L_5207536_SNP [dm6]	A	G	4.518e^-6	0.103	INTRON shep
2L	12266907	2L_12266907_SNP [dm3] 2L_12266907_SNP [dm6]	C	G	4.603e^-6	0.103	INTRON aret
2R	3618313	2R_3618313_SNP [dm3] 2R_7730808_SNP [dm6]	G	A	4.624e^-6	0.103	INTRON CG18812
X	8429489	X_8429489_SNP [dm3] X_8535456_SNP [dm6]	C	T	4.634e^-6	0.103	INTRON Nrg
3R	7121991	3R_7121991_SNP [dm3] 3R_11296269_SNP [dm6]	T	G	4.692e^-6	0.103	INTRON CR31386	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5199993	3L_5199993_SNP [dm3] 3L_5206893_SNP [dm6]	G	A	4.751e^-6	0.103	INTRON shep
3R	19022468	3R_19022468_SNP [dm3] 3R_23196746_SNP [dm6]	C	G	4.765e^-6	0.103	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6457384	2L_6457384_SNP [dm3] 2L_6457384_SNP [dm6]	T	G	5.045e^-6	0.108	SYNONYMOUS_CODING frj	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2835602	3L_2835602_SNP [dm3] 3L_2835602_SNP [dm6]	C	A	5.150e^-6	0.109	INTRON CG43444
3R	22883678	3R_22883678_SNP [dm3] 3R_27057956_SNP [dm6]	C	A	5.191e^-6	0.109	UTR_3_PRIME Nep5 DOWNSTREAM RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26431721	3R_26431721_SNP [dm3] 3R_30605999_SNP [dm6]	G	A	5.367e^-6	0.111	UTR_3_PRIME PH4alphaNE3 UPSTREAM CG31016
3R	10392184	3R_10392184_SNP [dm3] 3R_14566462_SNP [dm6]	A	G	5.406e^-6	0.111	NON_SYNONYMOUS_CODING CG14852 UTR_3_PRIME CG31313 DOWNSTREAM CG31313
2L	7531414	2L_7531414_SNP [dm3] 2L_7531414_SNP [dm6]	G	A	5.614e^-6	0.113	UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	26090610	3R_26090610_INS [dm3] 3R_30264888_INS [dm6]	T	TTGGG	5.630e^-6	0.113	INTERGENIC	silencer mE1_HDAC_PRE
2R	16665648	2R_16665648_SNP [dm3] 2R_20778143_SNP [dm6]	A	T	5.841e^-6	0.116	UPSTREAM CG43710 DOWNSTREAM CG43711 INTERGENIC
3R	26429351	3R_26429351_SNP [dm3] 3R_30603629_SNP [dm6]	T	C	5.986e^-6	0.117	SPLICE_SITE_REGION CG31021 UPSTREAM PH4alphaNE3 INTRON CG31021	TF binding site mE1_TFBS_HSA
X	16332855	X_16332855_SNP [dm3] X_16438822_SNP [dm6]	C	G	6.196e^-6	0.119	UTR_3_PRIME CG9947 DOWNSTREAM CG9947 & 1 other
2L	13233926	2L_13233926_SNP [dm3] 2L_13233926_SNP [dm6]	C	A	6.206e^-6	0.119	UTR_3_PRIME CG15479 DOWNSTREAM Prosalpha6T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8804474	3L_8804474_SNP [dm3] 3L_8811374_SNP [dm6]	G	T	6.314e^-6	0.12	DOWNSTREAM CG13309 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8805867	3L_8805867_SNP [dm3] 3L_8812767_SNP [dm6]	T	C	6.426e^-6	0.121	INTERGENIC
3R	26432099	3R_26432099_SNP [dm3] 3R_30606377_SNP [dm6]	C	T	6.598e^-6	0.123	SYNONYMOUS_CODING CG31016 DOWNSTREAM PH4alphaNE3
X	10194370	X_10194370_SNP [dm3] X_10300337_SNP [dm6]	A	G	7.517e^-6	0.138	INTRON alpha-Man-I
2R	12869987	2R_12869987_INS [dm3] 2R_16982482_INS [dm6]	A	AG	7.678e^-6	0.139	INTRON Cbp53E
2L	6717389	2L_6717389_SNP [dm3] 2L_6717389_SNP [dm6]	A	T	7.712e^-6	0.139	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
2L	3110529	2L_3110529_SNP [dm3] 2L_3110529_SNP [dm6]	C	T	7.840e^-6	0.14	SYNONYMOUS_CODING PpD6 INTRON toc
3L	15989963	3L_15989963_SNP [dm3] 3L_15996863_SNP [dm6]	T	C	7.946e^-6	0.141	INTRON CG5830
2R	14541061	2R_14541061_SNP [dm3] 2R_18653556_SNP [dm6]	T	A	8.292e^-6	0.144	UPSTREAM SP2637 INTRON SP2637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	10200189	X_10200189_SNP [dm3] X_10306156_SNP [dm6]	A	G	8.307e^-6	0.144	INTRON alpha-Man-I
3L	5211997	3L_5211997_INS [dm3] 3L_5218897_INS [dm6]	G	GCATACTTTTAGAAAG...	8.782e^-6	0.151	INTRON shep
2L	6157868	2L_6157868_SNP [dm3] 2L_6157868_SNP [dm6]	T	C	8.985e^-6	0.153	INTERGENIC
X	10202809	X_10202809_DEL [dm3] X_10308776_DEL [dm6]	GG	G	9.164e^-6	0.155	UTR_5_PRIME alpha-Man-I INTRON alpha-Man-I	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	16665646	2R_16665646_SNP [dm3] 2R_20778141_SNP [dm6]	A	G	9.448e^-6	0.158	UPSTREAM CG43710 DOWNSTREAM CG43711 INTERGENIC
2R	18264509	2R_18264509_SNP [dm3] 2R_22377004_SNP [dm6]	C	T	9.614e^-6	0.16	SYNONYMOUS_CODING Rtf1	TF binding site mE1_TFBS_sens
2L	8234171	2L_8234171_SNP [dm3] 2L_8234171_SNP [dm6]	C	T	9.912e^-6	0.162	INTRON Pvr
3R	11678671	3R_11678671_SNP [dm3] 3R_15852949_SNP [dm6]	G	A	1.003e^-5	0.162	DOWNSTREAM Hmt-1 INTRON cv-d	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1901966	2L_1901966_SNP [dm3] 2L_1901966_SNP [dm6]	T	C	1.004e^-5	0.162	INTRON CG7337
3L	16007225	3L_16007225_SNP [dm3] 3L_16014125_SNP [dm6]	C	G	1.018e^-5	0.163	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	15389311	3R_15389311_SNP [dm3] 3R_19563589_SNP [dm6]	G	T	1.032e^-5	0.164	INTRON Dys
2R	9212897	2R_9212897_SNP [dm3] 2R_13325392_SNP [dm6]	T	C	1.062e^-5	0.165	INTERGENIC
2L	6456226	2L_6456226_SNP [dm3] 2L_6456226_SNP [dm6]	G	T	1.093e^-5	0.165	UPSTREAM frj & 1 other INTRON frj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8362580	2L_8362580_SNP [dm3] 2L_8362580_SNP [dm6]	T	G	1.096e^-5	0.165	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	8362587	2L_8362587_SNP [dm3] 2L_8362587_SNP [dm6]	C	G	1.096e^-5	0.165	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	12037867	2R_12037867_INS [dm3] 2R_16150362_INS [dm6]	A	AA	1.118e^-5	0.165	UTR_5_PRIME lbk UPSTREAM CG10731	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
4	428402	4_428402_SNP [dm3] 4_407776_SNP [dm6]	C	T	1.120e^-5	0.165	INTERGENIC	transposable element FlyBase
2L	3617439	2L_3617439_SNP [dm3] 2L_3617439_SNP [dm6]	A	G	1.127e^-5	0.165	EXON CR44310	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5195131	3L_5195131_SNP [dm3] 3L_5202031_SNP [dm6]	T	C	1.140e^-5	0.165	UPSTREAM shep INTRON shep
3L	5197114	3L_5197114_SNP [dm3] 3L_5204014_SNP [dm6]	C	T	1.140e^-5	0.165	INTRON shep
2R	12870426	2R_12870426_SNP [dm3] 2R_16982921_SNP [dm6]	T	A	1.150e^-5	0.165	INTRON Cbp53E
2R	8435190	2R_8435190_SNP [dm3] 2R_12547685_SNP [dm6]	T	A	1.155e^-5	0.165	INTRON fra
2R	10235686	2R_10235686_SNP [dm3] 2R_14348181_SNP [dm6]	T	C	1.158e^-5	0.165	INTRON Shroom
2L	4918103	2L_4918103_SNP [dm3] 2L_4918103_SNP [dm6]	A	G	1.161e^-5	0.165	INTRON hoe1
2L	6717591	2L_6717591_SNP [dm3] 2L_6717591_SNP [dm6]	A	T	1.169e^-5	0.165	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	11124358	3R_11124358_SNP [dm3] 3R_15298636_SNP [dm6]	T	A	1.172e^-5	0.165	DOWNSTREAM Tm1 INTRON Tm1
2L	7015439	2L_7015439_SNP [dm3] 2L_7015439_SNP [dm6]	A	G	1.197e^-5	0.167	SYNONYMOUS_CODING ade3 DOWNSTREAM CG43322	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14898882	3R_14898882_SNP [dm3] 3R_19073160_SNP [dm6]	T	C	1.203e^-5	0.167	INTRON cdi
3L	13715278	3L_13715278_SNP [dm3] 3L_13722178_SNP [dm6]	G	T	1.270e^-5	0.173	INTRON bru-3
3L	20856998	3L_20856998_SNP [dm3] 3L_20863898_SNP [dm6]	C	A	1.271e^-5	0.173	INTRON CG32432
2L	8363698	2L_8363698_SNP [dm3] 2L_8363698_SNP [dm6]	T	A	1.274e^-5	0.173	UTR_3_PRIME RpS13 DOWNSTREAM RpS13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_sens
3R	18440409	3R_18440409_SNP [dm3] 3R_22614687_SNP [dm6]	G	A	1.281e^-5	0.173	SYNONYMOUS_CODING EF-G2	TF binding site mE1_TFBS_sens
2L	8066249	2L_8066249_SNP [dm3] 2L_8066249_SNP [dm6]	G	A	1.301e^-5	0.174	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad
2L	10144113	2L_10144113_SNP [dm3] 2L_10144113_SNP [dm6]	T	G	1.320e^-5	0.175	UPSTREAM CG4839 INTRON CG44153
2L	6198932	2L_6198932_SNP [dm3] 2L_6198932_SNP [dm6]	T	G	1.355e^-5	0.178	INTRON CG34380
4	503111	4_503111_SNP [dm3] 4_482485_SNP [dm6]	T	C	1.371e^-5	0.178	SPLICE_SITE_REGION Asator START_GAINED Asator UTR_5_PRIME Asator UPSTREAM Asator INTRON Asator	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	16043416	2L_16043416_SNP [dm3] 2L_16043416_SNP [dm6]	A	G	1.372e^-5	0.178	INTRON BicC & 1 other
3R	22881878	3R_22881878_DEL [dm3] 3R_27056156_DEL [dm6]	CGATTGT	C	1.375e^-5	0.178	INTRON RYa-R
2L	11295911	2L_11295911_SNP [dm3] 2L_11295911_SNP [dm6]	C	A	1.394e^-5	0.179	INTERGENIC
2L	11177618	2L_11177618_INS [dm3] 2L_11177618_INS [dm6]	G	AA	1.424e^-5	0.181	INTRON Ca-beta
2R	14547159	2R_14547159_SNP [dm3] 2R_18659654_SNP [dm6]	G	A	1.457e^-5	0.184	NON_SYNONYMOUS_CODING Gint3 UTR_3_PRIME CG42306	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17357002	2R_17357002_SNP [dm3] 2R_21469497_SNP [dm6]	C	A	1.481e^-5	0.184	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9262169	2L_9262169_SNP [dm3] 2L_9262169_SNP [dm6]	G	A	1.484e^-5	0.184	INTRON Ggamma30A EXON CR45262
3L	11065365	3L_11065365_SNP [dm3] 3L_11072265_SNP [dm6]	C	T	1.509e^-5	0.184	SYNONYMOUS_CODING Mocs1	TF binding site mE1_TFBS_sens
3L	2558878	3L_2558878_SNP [dm3] 3L_2558878_SNP [dm6]	C	T	1.510e^-5	0.184	INTRON msn
2L	6717438	2L_6717438_SNP [dm3] 2L_6717438_SNP [dm6]	A	C	1.517e^-5	0.184	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
2L	6717451	2L_6717451_SNP [dm3] 2L_6717451_SNP [dm6]	T	A	1.517e^-5	0.184	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
2R	14760362	2R_14760362_SNP [dm3] 2R_18872857_SNP [dm6]	T	C	1.524e^-5	0.184	INTERGENIC
2L	7536931	2L_7536931_SNP [dm3] 2L_7536931_SNP [dm6]	C	A	1.588e^-5	0.191	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18282889	2L_18282889_SNP [dm3] 2L_18282889_SNP [dm6]	T	A	1.626e^-5	0.194	INTERGENIC
2L	6455154	2L_6455154_SNP [dm3] 2L_6455154_SNP [dm6]	G	A	1.659e^-5	0.197	UPSTREAM frj INTRON retm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	19536665	2R_19536665_INS [dm3] 2R_23649142_INS [dm6]	T	TGTGTATGTGTAT...	1.727e^-5	0.203	INTRON retn	TF binding site BDTNP1_TFBS_dl
X	17971598	X_17971598_SNP [dm3] X_18077565_SNP [dm6]	A	G	1.768e^-5	0.206	SYNONYMOUS_CODING Dhc16F DOWNSTREAM CG7536
X	18435896	X_18435896_SNP [dm3] X_18541863_SNP [dm6]	G	A	1.769e^-5	0.206	INTRON Bx
3L	22378867	3L_22378867_SNP [dm3] 3L_22385767_SNP [dm6]	G	C	1.799e^-5	0.207	INTRON Ten-m	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6717484	2L_6717484_SNP [dm3] 2L_6717484_SNP [dm6]	A	G	1.805e^-5	0.207	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
3R	26639186	3R_26639186_SNP [dm3] 3R_30813464_SNP [dm6]	C	T	1.821e^-5	0.208	INTRON cindr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	13364578	2R_13364578_SNP [dm3] 2R_17477073_SNP [dm6]	T	C	1.856e^-5	0.211	UPSTREAM CG6520 DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	8342696	2L_8342696_SNP [dm3] 2L_8342696_SNP [dm6]	G	A	1.920e^-5	0.217	UTR_5_PRIME CG14273 DOWNSTREAM CG14274 & 1 other
2L	14317103	2L_14317103_SNP [dm3] 2L_14317103_SNP [dm6]	C	T	1.956e^-5	0.219	INTRON wb
3R	11330098	3R_11330098_SNP [dm3] 3R_15504376_SNP [dm6]	A	G	2.009e^-5	0.224	INTERGENIC
2L	8987416	2L_8987416_SNP [dm3] 2L_8987416_SNP [dm6]	G	A	2.035e^-5	0.224	INTRON rost
X	12369053	X_12369053_SNP [dm3] X_12475020_SNP [dm6]	A	C	2.048e^-5	0.224	UPSTREAM CG42258 INTRON CG42258
X	12369054	X_12369054_SNP [dm3] X_12475021_SNP [dm6]	G	C	2.048e^-5	0.224	UPSTREAM CG42258 INTRON CG42258
3L	22378915	3L_22378915_SNP [dm3] 3L_22385815_SNP [dm6]	G	A	2.074e^-5	0.224	INTRON Ten-m	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8802372	3L_8802372_SNP [dm3] 3L_8809272_SNP [dm6]	A	T	2.079e^-5	0.224	NON_SYNONYMOUS_CODING CG13308 DOWNSTREAM CG32024
3R	16010932	3R_16010932_INS [dm3] 3R_20185210_INS [dm6]	G	GA	2.080e^-5	0.224	INTERGENIC
3L	5359631	3L_5359631_SNP [dm3] 3L_5366531_SNP [dm6]	C	T	2.096e^-5	0.224	START_GAINED Membrin UTR_5_PRIME Membrin UPSTREAM Uev1A DOWNSTREAM CG10635	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	17155839	2R_17155839_SNP [dm3] 2R_21268334_SNP [dm6]	A	T	2.134e^-5	0.227	UPSTREAM CG30393 INTRON Rgk3
3L	9839050	3L_9839050_SNP [dm3] 3L_9845950_SNP [dm6]	C	T	2.170e^-5	0.229	INTRON RasGAP1
2L	14833733	2L_14833733_SNP [dm3] 2L_14833733_SNP [dm6]	G	T	2.201e^-5	0.231	INTERGENIC
2L	7802739	2L_7802739_SNP [dm3] 2L_7802739_SNP [dm6]	G	A	2.247e^-5	0.232	SYNONYMOUS_CODING cdc14 UTR_3_PRIME cdc14 DOWNSTREAM r2d2	TF binding site mE1_TFBS_cad
2L	6457468	2L_6457468_SNP [dm3] 2L_6457468_SNP [dm6]	C	T	2.267e^-5	0.232	SYNONYMOUS_CODING frj	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22809986	3R_22809986_SNP [dm3] 3R_26984264_SNP [dm6]	A	T	2.274e^-5	0.232	INTRON CG14253
X	3055510	X_3055510_SNP [dm3] X_3161477_SNP [dm6]	G	A	2.287e^-5	0.232	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	22405303	3R_22405303_SNP [dm3] 3R_26579581_SNP [dm6]	C	T	2.291e^-5	0.232	INTRON scrib	TF binding site mE1_TFBS_cad
3R	11114223	3R_11114223_SNP [dm3] 3R_15288501_SNP [dm6]	G	T	2.301e^-5	0.232	NON_SYNONYMOUS_CODING Tm1 UTR_5_PRIME Tm1 INTRON Tm1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22880736	3R_22880736_SNP [dm3] 3R_27055014_SNP [dm6]	C	G	2.301e^-5	0.232	INTRON RYa-R
3L	12194708	3L_12194708_SNP [dm3] 3L_12201608_SNP [dm6]	T	C	2.305e^-5	0.232	INTRON Adk1
3L	20525774	3L_20525774_SNP [dm3] 3L_20532674_SNP [dm6]	C	T	2.346e^-5	0.235	INTRON Rcd2
2L	7434639	2L_7434639_SNP [dm3] 2L_7434639_SNP [dm6]	G	T	2.366e^-5	0.235	INTERGENIC
3L	9089247	3L_9089247_SNP [dm3] 3L_9096147_SNP [dm6]	A	C	2.395e^-5	0.236	UPSTREAM CG13315 INTERGENIC
3L	9089248	3L_9089248_SNP [dm3] 3L_9096148_SNP [dm6]	G	A	2.395e^-5	0.236	UPSTREAM CG13315 INTERGENIC
3L	8522398	3L_8522398_INS [dm3] 3L_8529298_INS [dm6]	T	TACA	2.470e^-5	0.242	INTRON foi
2R	3608899	2R_3608899_SNP [dm3] 2R_7721394_SNP [dm6]	G	A	2.482e^-5	0.242	INTRON CG18812
X	3051523	X_3051523_SNP [dm3] X_3157490_SNP [dm6]	A	T	2.494e^-5	0.242	INTRON N
2L	19810418	2L_19810418_SNP [dm3] 2L_19810418_SNP [dm6]	T	C	2.525e^-5	0.243	UPSTREAM snRNA:U4:38AB INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	10201145	X_10201145_SNP [dm3] X_10307112_SNP [dm6]	A	C	2.532e^-5	0.243	INTRON alpha-Man-I
2L	13326044	2L_13326044_SNP [dm3] 2L_13326044_SNP [dm6]	C	A	2.565e^-5	0.243	INTRON CG43778
2R	19661061	2R_19661061_SNP [dm3] 2R_23773538_SNP [dm6]	T	C	2.569e^-5	0.243	INTRON CG9850
2L	14223380	2L_14223380_SNP [dm3] 2L_14223380_SNP [dm6]	T	A	2.577e^-5	0.243	INTRON Dyrk2
2R	13240489	2R_13240489_SNP [dm3] 2R_17352984_SNP [dm6]	T	G	2.613e^-5	0.245	UTR_3_PRIME mbl INTRON mbl
2R	3580732	2R_3580732_SNP [dm3] 2R_7693227_SNP [dm6]	A	G	2.618e^-5	0.245	INTRON CG1399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1858957	2L_1858957_SNP [dm3] 2L_1858957_SNP [dm6]	G	A	2.681e^-5	0.249	SYNONYMOUS_CODING CG31663 DOWNSTREAM wry
3R	4308673	3R_4308673_SNP [dm3] 3R_8482951_SNP [dm6]	T	A	2.716e^-5	0.251	INTERGENIC
3L	20510835	3L_20510835_SNP [dm3] 3L_20517735_SNP [dm6]	G	A	2.759e^-5	0.252	UPSTREAM CG5059 INTRON CG5059	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk
X	15396450	X_15396450_SNP [dm3] X_15502417_SNP [dm6]	G	A	2.761e^-5	0.252	INTRON Gmap	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8245520	2L_8245520_SNP [dm3] 2L_8245520_SNP [dm6]	A	C	2.780e^-5	0.252	INTRON CG8086
2R	10671898	2R_10671898_SNP [dm3] 2R_14784393_SNP [dm6]	G	A	2.793e^-5	0.252	INTRON kn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	8283941	X_8283941_SNP [dm3] X_8389908_SNP [dm6]	A	C	2.807e^-5	0.252	DOWNSTREAM CG1387 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	4461002	2R_4461002_SNP [dm3] 2R_8573497_SNP [dm6]	T	C	2.831e^-5	0.252	UTR_3_PRIME CG42326	TF binding site mE1_TFBS_cad
2L	19810409	2L_19810409_SNP [dm3] 2L_19810409_SNP [dm6]	C	T	2.835e^-5	0.252	UPSTREAM snRNA:U4:38AB INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	10387740	3R_10387740_SNP [dm3] 3R_14562018_SNP [dm6]	C	T	2.850e^-5	0.252	UPSTREAM CG14851 DOWNSTREAM CG14850 INTERGENIC
2L	8362611	2L_8362611_SNP [dm3] 2L_8362611_SNP [dm6]	G	T	2.852e^-5	0.252	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	8922672	3R_8922672_SNP [dm3] 3R_13096950_SNP [dm6]	G	T	2.868e^-5	0.252	INTRON timeout
2R	14270300	2R_14270300_SNP [dm3] 2R_18382795_SNP [dm6]	G	A	2.875e^-5	0.252	SYNONYMOUS_CODING IM23 UPSTREAM CG43202
2R	7613300	2R_7613300_SNP [dm3] 2R_11725795_SNP [dm6]	C	T	2.909e^-5	0.254	NON_SYNONYMOUS_CODING pyr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	20846463	3L_20846463_DEL [dm3] 3L_20853363_DEL [dm6]	TT	T	2.921e^-5	0.254	INTRON CG32432
2L	11177584	2L_11177584_SNP [dm3] 2L_11177584_SNP [dm6]	A	T	2.951e^-5	0.254	INTRON Ca-beta
3R	26613252	3R_26613252_SNP [dm3] 3R_30787530_SNP [dm6]	G	A	2.960e^-5	0.254	UTR_3_PRIME zfh1 DOWNSTREAM zfh1
3R	10384707	3R_10384707_SNP [dm3] 3R_14558985_SNP [dm6]	A	C	2.960e^-5	0.254	UPSTREAM Pde6 DOWNSTREAM CG14854 INTERGENIC	insulator Insulator_Class_II.mE01
2L	5797418	2L_5797418_SNP [dm3] 2L_5797418_SNP [dm6]	T	A	2.985e^-5	0.254	INTRON CG9171
X	11562897	X_11562897_SNP [dm3] X_11668864_SNP [dm6]	A	T	2.993e^-5	0.254	SYNONYMOUS_CODING Ptp10D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3935909	3L_3935909_SNP [dm3] 3L_3935909_SNP [dm6]	G	A	3.026e^-5	0.256	UPSTREAM Eip63F-1 DOWNSTREAM CG10866 EXON Eip63F-2
3L	2916099	3L_2916099_SNP [dm3] 3L_2916099_SNP [dm6]	G	C	3.089e^-5	0.258	NON_SYNONYMOUS_CODING CG9970 INTRON Shab
X	3051518	X_3051518_INS [dm3] X_3157485_INS [dm6]	A	ATGTA	3.096e^-5	0.258	INTRON N
X	16415542	X_16415542_SNP [dm3] X_16521509_SNP [dm6]	G	T	3.106e^-5	0.258	INTRON para
2L	6610648	2L_6610648_SNP [dm3] 2L_6610648_SNP [dm6]	C	T	3.107e^-5	0.258	UPSTREAM CG11050 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
X	15319315	X_15319315_SNP [dm3] X_15425282_SNP [dm6]	C	T	3.131e^-5	0.258	INTRON Cngl
3R	23259939	3R_23259939_SNP [dm3] 3R_27434217_SNP [dm6]	T	A	3.146e^-5	0.258	INTRON side	TF binding site BDTNP1_TFBS_twi
X	3051545	X_3051545_DEL [dm3] X_3157512_DEL [dm6]	TGT	T	3.148e^-5	0.258	INTRON N
2L	6451306	2L_6451306_SNP [dm3] 2L_6451306_SNP [dm6]	G	T	3.228e^-5	0.261	INTRON retm	TF binding site mE1_TFBS_cad
2L	6451674	2L_6451674_SNP [dm3] 2L_6451674_SNP [dm6]	G	A	3.228e^-5	0.261	SYNONYMOUS_CODING retm	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12641118	2L_12641118_SNP [dm3] 2L_12641118_SNP [dm6]	C	T	3.229e^-5	0.261	UTR_5_PRIME Ref2
3L	20758516	3L_20758516_SNP [dm3] 3L_20765416_SNP [dm6]	T	A	3.238e^-5	0.261	INTERGENIC
3L	5197700	3L_5197700_SNP [dm3] 3L_5204600_SNP [dm6]	G	A	3.264e^-5	0.262	INTRON shep
3L	12578264	3L_12578264_SNP [dm3] 3L_12585164_SNP [dm6]	G	T	3.294e^-5	0.262	INTRON ara
X	13677415	X_13677415_DEL [dm3] X_13783382_DEL [dm6]	AAATA	A	3.314e^-5	0.262	UPSTREAM inaE DOWNSTREAM CG11103 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3R	26347851	3R_26347851_SNP [dm3] 3R_30522129_SNP [dm6]	T	C	3.332e^-5	0.262	INTRON jdp
2L	19823033	2L_19823033_SNP [dm3] 2L_19823033_SNP [dm6]	T	C	3.336e^-5	0.262	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6723808	2L_6723808_SNP [dm3] 2L_6723808_SNP [dm6]	T	C	3.349e^-5	0.262	UPSTREAM Liprin-alpha & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	6717469	2L_6717469_SNP [dm3] 2L_6717469_SNP [dm6]	G	A	3.351e^-5	0.262	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
2R	14991243	2R_14991243_SNP [dm3] 2R_19103738_SNP [dm6]	A	G	3.412e^-5	0.266	INTRON 5-HT1A
3R	17927170	3R_17927170_SNP [dm3] 3R_22101448_SNP [dm6]	T	C	3.511e^-5	0.27	INTRON CG5778
3L	22606843	3L_22606843_SNP [dm3] 3L_22613743_SNP [dm6]	T	A	3.514e^-5	0.27	INTRON CG14459
3L	22606852	3L_22606852_SNP [dm3] 3L_22613752_SNP [dm6]	A	T	3.514e^-5	0.27	INTRON CG14459
3L	16661154	3L_16661154_SNP [dm3] 3L_16668054_SNP [dm6]	C	T	3.605e^-5	0.276	UPSTREAM Galphaf INTERGENIC	TF binding site mE1_TFBS_inv
3R	25451499	3R_25451499_SNP [dm3] 3R_29625777_SNP [dm6]	A	G	3.680e^-5	0.281	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	761085	X_761085_SNP [dm3] X_867052_SNP [dm6]	A	G	3.719e^-5	0.282	INTRON CG43867
X	6117804	X_6117804_SNP [dm3] X_6223771_SNP [dm6]	C	T	3.775e^-5	0.283	SYNONYMOUS_CODING sqh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	11520487	3L_11520487_SNP [dm3] 3L_11527387_SNP [dm6]	G	A	3.841e^-5	0.283	INTRON Mob2	TF binding site mE1_TFBS_HSA
2L	7137770	2L_7137770_SNP [dm3] 2L_7137770_SNP [dm6]	A	G	3.889e^-5	0.283	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9277462	2L_9277462_SNP [dm3] 2L_9277462_SNP [dm6]	A	T	3.903e^-5	0.283	INTRON Ggamma30A
3R	27120061	3R_27120061_SNP [dm3] 3R_31294339_SNP [dm6]	T	A	3.922e^-5	0.283	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12621248	2L_12621248_SNP [dm3] 2L_12621248_SNP [dm6]	G	T	3.922e^-5	0.283	INTRON Ref2 & 1 other
3R	18515707	3R_18515707_SNP [dm3] 3R_22689985_SNP [dm6]	G	C	3.966e^-5	0.283	NON_SYNONYMOUS_CODING wfs1 UPSTREAM Nup133	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22625987	3R_22625987_INS [dm3] 3R_26800265_INS [dm6]	A	ATGCAGTTTGGCTTTGCGCA...	3.976e^-5	0.283	INTRON Tl
3L	20794246	3L_20794246_SNP [dm3] 3L_20801146_SNP [dm6]	C	T	4.009e^-5	0.283	SYNONYMOUS_CODING Spc105R	TF binding site mE1_TFBS_sens
2L	6021663	2L_6021663_SNP [dm3] 2L_6021663_SNP [dm6]	T	C	4.041e^-5	0.283	SYNONYMOUS_CODING CG13996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8074737	2L_8074737_SNP [dm3] 2L_8074737_SNP [dm6]	A	C	4.065e^-5	0.283	UTR_3_PRIME Mcr DOWNSTREAM Trf
2L	13239346	2L_13239346_INS [dm3] 2L_13239346_INS [dm6]	A	AATGTGTA	4.074e^-5	0.283	UPSTREAM CG5945 DOWNSTREAM CG5867 INTERGENIC
2L	11141125	2L_11141125_SNP [dm3] 2L_11141125_SNP [dm6]	C	A	4.088e^-5	0.283	INTRON Gyc32E
2L	11141128	2L_11141128_SNP [dm3] 2L_11141128_SNP [dm6]	A	G	4.088e^-5	0.283	INTRON Gyc32E
2L	11141129	2L_11141129_SNP [dm3] 2L_11141129_SNP [dm6]	T	A	4.088e^-5	0.283	INTRON Gyc32E
2L	11141146	2L_11141146_SNP [dm3] 2L_11141146_SNP [dm6]	T	C	4.088e^-5	0.283	INTRON Gyc32E
2L	2332376	2L_2332376_SNP [dm3] 2L_2332376_SNP [dm6]	G	A	4.088e^-5	0.283	INTRON CG9967 & 1 other
2R	12870451	2R_12870451_SNP [dm3] 2R_16982946_SNP [dm6]	T	A	4.108e^-5	0.283	INTRON Cbp53E
2L	10855034	2L_10855034_SNP [dm3] 2L_10855034_SNP [dm6]	A	T	4.113e^-5	0.283	UTR_3_PRIME Dnz1 DOWNSTREAM CG43129	TF binding site mE1_TFBS_cad
2L	6740678	2L_6740678_DEL [dm3] 2L_6740678_DEL [dm6]	ACATAAAATTAACCTT...	A	4.116e^-5	0.283	UPSTREAM TTLL3A INTERGENIC
2R	17808567	2R_17808567_SNP [dm3] 2R_21921062_SNP [dm6]	C	T	4.118e^-5	0.283	INTRON Fili	TF binding site mE1_TFBS_inv
3R	10824577	3R_10824577_SNP [dm3] 3R_14998855_SNP [dm6]	A	G	4.124e^-5	0.283	INTERGENIC
2L	16043423	2L_16043423_SNP [dm3] 2L_16043423_SNP [dm6]	G	A	4.125e^-5	0.283	INTRON BicC & 1 other
3L	5194663	3L_5194663_SNP [dm3] 3L_5201563_SNP [dm6]	T	C	4.141e^-5	0.283	UPSTREAM shep INTRON shep
2R	17357072	2R_17357072_SNP [dm3] 2R_21469567_SNP [dm6]	C	A	4.142e^-5	0.283	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26430135	3R_26430135_SNP [dm3] 3R_30604413_SNP [dm6]	C	T	4.156e^-5	0.283	SYNONYMOUS_CODING PH4alphaNE3 DOWNSTREAM CG31021
2L	3617483	2L_3617483_SNP [dm3] 2L_3617483_SNP [dm6]	A	T	4.163e^-5	0.283	EXON CR44310	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18197603	3L_18197603_SNP [dm3] 3L_18204503_SNP [dm6]	C	T	4.175e^-5	0.283	DOWNSTREAM CG7320 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
3R	15261071	3R_15261071_SNP [dm3] 3R_19435349_SNP [dm6]	C	A	4.187e^-5	0.283	INTRON CG31221
3R	7506104	3R_7506104_SNP [dm3] 3R_11680382_SNP [dm6]	G	A	4.187e^-5	0.283	SYNONYMOUS_CODING Ho UPSTREAM Taf12 DOWNSTREAM CG6830	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	4404734	2L_4404734_SNP [dm3] 2L_4404734_SNP [dm6]	G	T	4.194e^-5	0.283	UTR_3_PRIME CG15431 DOWNSTREAM Dim1
2L	16047224	2L_16047224_SNP [dm3] 2L_16047224_SNP [dm6]	T	A	4.269e^-5	0.286	SYNONYMOUS_CODING BicC UTR_3_PRIME CG45084	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6450575	2L_6450575_SNP [dm3] 2L_6450575_SNP [dm6]	C	G	4.280e^-5	0.286	INTRON retm	TF binding site mE1_TFBS_cad
3R	14901276	3R_14901276_DEL [dm3] 3R_19075554_DEL [dm6]	CGCAAGGGGGCAGCGC...	C	4.315e^-5	0.287	INTRON cdi
2L	7990301	2L_7990301_SNP [dm3] 2L_7990301_SNP [dm6]	A	G	4.321e^-5	0.287	DOWNSTREAM pes INTRON pes	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12947763	X_12947763_SNP [dm3] X_13053730_SNP [dm6]	T	C	4.341e^-5	0.287	SYNONYMOUS_CODING CG12715 UPSTREAM CR44840 INTRON rad
X	3051535	X_3051535_SNP [dm3] X_3157502_SNP [dm6]	C	G	4.372e^-5	0.288	INTRON N
X	7207645	X_7207645_SNP [dm3] X_7313612_SNP [dm6]	T	C	4.409e^-5	0.289	INTRON CR44357 & 1 other
2L	3594816	2L_3594816_SNP [dm3] 2L_3594816_SNP [dm6]	C	T	4.420e^-5	0.289	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	20854813	3L_20854813_SNP [dm3] 3L_20861713_SNP [dm6]	A	T	4.421e^-5	0.289	INTRON CG32432
3L	12411499	3L_12411499_SNP [dm3] 3L_12418399_SNP [dm6]	C	G	4.440e^-5	0.289	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
3R	24881901	3R_24881901_SNP [dm3] 3R_29056179_SNP [dm6]	T	G	4.451e^-5	0.289	NON_SYNONYMOUS_CODING Sirt7 DOWNSTREAM CG11843	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	17028381	3R_17028381_SNP [dm3] 3R_21202659_SNP [dm6]	A	C	4.559e^-5	0.291	INTRON SNF4Agamma
3R	17028421	3R_17028421_SNP [dm3] 3R_21202699_SNP [dm6]	T	C	4.559e^-5	0.291	INTRON SNF4Agamma
X	21338170	X_21338170_SNP [dm3] X_21467143_SNP [dm6]	A	C	4.567e^-5	0.291	DOWNSTREAM CR45508 EXON CR45507
X	21338171	X_21338171_SNP [dm3] X_21467144_SNP [dm6]	C	A	4.567e^-5	0.291	DOWNSTREAM CR45508 EXON CR45507
3R	5449886	3R_5449886_SNP [dm3] 3R_9624164_SNP [dm6]	G	A	4.574e^-5	0.291	SYNONYMOUS_CODING CG8312 DOWNSTREAM CG9427	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5769355	2L_5769355_SNP [dm3] 2L_5769355_SNP [dm6]	G	A	4.625e^-5	0.293	SYNONYMOUS_CODING CG9171 UPSTREAM CR31912	TF binding site mE1_TFBS_cad
2L	9398385	2L_9398385_SNP [dm3] 2L_9398385_SNP [dm6]	C	A	4.634e^-5	0.293	UPSTREAM CG4438 INTRON Shawl
3L	1835421	3L_1835421_SNP [dm3] 3L_1835421_SNP [dm6]	T	G	4.672e^-5	0.294	UPSTREAM Cpr62Bb INTERGENIC
3L	5349748	3L_5349748_SNP [dm3] 3L_5356648_SNP [dm6]	T	G	4.679e^-5	0.294	UPSTREAM lama DOWNSTREAM tRNA:CR32421 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
2L	5378115	2L_5378115_SNP [dm3] 2L_5378115_SNP [dm6]	A	T	4.728e^-5	0.296	DOWNSTREAM CR42850 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	10200309	X_10200309_INS [dm3] X_10306276_INS [dm6]	A	AATATA	4.763e^-5	0.297	INTRON alpha-Man-I
3R	19447362	3R_19447362_DEL [dm3] 3R_23621640_DEL [dm6]	GAT	G	4.770e^-5	0.297	INTRON CG31145
2L	6610565	2L_6610565_SNP [dm3] 2L_6610565_SNP [dm6]	T	A	4.823e^-5	0.298	UPSTREAM CG11050 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
3R	22962340	3R_22962340_SNP [dm3] 3R_27136618_SNP [dm6]	T	A	4.828e^-5	0.298	INTRON CG6051
3L	5422361	3L_5422361_SNP [dm3] 3L_5429261_SNP [dm6]	G	T	4.920e^-5	0.303	UTR_5_PRIME CG34391
2R	13020696	2R_13020696_SNP [dm3] 2R_17133191_SNP [dm6]	G	A	4.987e^-5	0.303	UPSTREAM Acp54A1 & 1 other INTERGENIC
3R	26292061	3R_26292061_SNP [dm3] 3R_30466339_SNP [dm6]	T	C	5.009e^-5	0.303	UTR_5_PRIME PH4alphaEFB DOWNSTREAM CDase	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6451564	2L_6451564_SNP [dm3] 2L_6451564_SNP [dm6]	C	A	5.031e^-5	0.303	INTRON retm	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18456145	3R_18456145_SNP [dm3] 3R_22630423_SNP [dm6]	G	C	5.040e^-5	0.303	SYNONYMOUS_CODING loco INTRON loco EXON CR43474	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	22597542	3L_22597542_SNP [dm3] 3L_22604442_SNP [dm6]	G	A	5.046e^-5	0.303	INTRON CG14459
3R	15301505	3R_15301505_SNP [dm3] 3R_19475783_SNP [dm6]	C	A	5.089e^-5	0.303	INTRON Dys	TF binding site mE1_TFBS_inv
3R	27155505	3R_27155505_SNP [dm3] 3R_31329783_SNP [dm6]	C	G	5.090e^-5	0.303	INTRON CG34347	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5778328	2L_5778328_SNP [dm3] 2L_5778328_SNP [dm6]	C	A	5.128e^-5	0.303	INTRON CG9171	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5778331	2L_5778331_SNP [dm3] 2L_5778331_SNP [dm6]	C	T	5.128e^-5	0.303	INTRON CG9171	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6157731	2L_6157731_SNP [dm3] 2L_6157731_SNP [dm6]	T	G	5.171e^-5	0.303	INTERGENIC
2L	4734992	2L_4734992_DEL [dm3] 2L_4734992_DEL [dm6]	TATAT	T	5.186e^-5	0.303	UTR_3_PRIME CG15630 UPSTREAM CG15631
2L	14222334	2L_14222334_SNP [dm3] 2L_14222334_SNP [dm6]	C	T	5.187e^-5	0.303	INTRON Dyrk2
3R	22884648	3R_22884648_SNP [dm3] 3R_27058926_SNP [dm6]	G	A	5.216e^-5	0.303	UTR_3_PRIME Nep5 DOWNSTREAM RYa-R INTRON Nep5	TF binding site mE1_TFBS_chinmo
X	6114387	X_6114387_SNP [dm3] X_6220354_SNP [dm6]	C	T	5.224e^-5	0.303	START_GAINED Efr UTR_5_PRIME Efr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7883013	2L_7883013_SNP [dm3] 2L_7883013_SNP [dm6]	G	A	5.296e^-5	0.303	DOWNSTREAM CG7102 INTERGENIC
2L	15762001	2L_15762001_SNP [dm3] 2L_15762001_SNP [dm6]	C	A	5.302e^-5	0.303	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	10825003	3R_10825003_SNP [dm3] 3R_14999281_SNP [dm6]	C	T	5.340e^-5	0.303	INTERGENIC
2R	13325796	2R_13325796_SNP [dm3] 2R_17438291_SNP [dm6]	A	C	5.362e^-5	0.303	INTRON EDTP
2L	7514835	2L_7514835_SNP [dm3] 2L_7514835_SNP [dm6]	G	C	5.392e^-5	0.303	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da
2R	17357101	2R_17357101_SNP [dm3] 2R_21469596_SNP [dm6]	A	G	5.479e^-5	0.303	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22892225	3R_22892225_SNP [dm3] 3R_27066503_SNP [dm6]	G	A	5.481e^-5	0.303	DOWNSTREAM CG43935 INTRON spz	TF binding site mE1_TFBS_inv
3R	22894448	3R_22894448_SNP [dm3] 3R_27068726_SNP [dm6]	T	C	5.481e^-5	0.303	INTRON spz
2L	17601891	2L_17601891_SNP [dm3] 2L_17601891_SNP [dm6]	T	C	5.494e^-5	0.303	INTRON Sytalpha
2L	17601977	2L_17601977_SNP [dm3] 2L_17601977_SNP [dm6]	T	C	5.494e^-5	0.303	SYNONYMOUS_CODING Sytalpha
3L	16146831	3L_16146831_SNP [dm3] 3L_16153731_SNP [dm6]	T	C	5.520e^-5	0.303	INTRON CG5151
2R	10423946	2R_10423946_SNP [dm3] 2R_14536441_SNP [dm6]	T	C	5.531e^-5	0.303	INTRON ttv
3L	4937177	3L_4937177_SNP [dm3] 3L_4937177_SNP [dm6]	C	T	5.557e^-5	0.303	UTR_3_PRIME Con DOWNSTREAM Con
2L	5778354	2L_5778354_SNP [dm3] 2L_5778354_SNP [dm6]	T	C	5.608e^-5	0.303	INTRON CG9171	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5778368	2L_5778368_SNP [dm3] 2L_5778368_SNP [dm6]	A	C	5.608e^-5	0.303	INTRON CG9171	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5778399	2L_5778399_SNP [dm3] 2L_5778399_SNP [dm6]	A	T	5.608e^-5	0.303	INTRON CG9171	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5778402	2L_5778402_SNP [dm3] 2L_5778402_SNP [dm6]	T	A	5.608e^-5	0.303	INTRON CG9171	TF binding site mE1_TFBS_cad
2L	5778406	2L_5778406_DEL [dm3] 2L_5778406_DEL [dm6]	TA	T	5.608e^-5	0.303	INTRON CG9171	TF binding site mE1_TFBS_cad
2L	5779920	2L_5779920_SNP [dm3] 2L_5779920_SNP [dm6]	C	T	5.608e^-5	0.303	INTRON CG9171	TF binding site BDTNP1_TFBS_twi
X	10201546	X_10201546_SNP [dm3] X_10307513_SNP [dm6]	T	C	5.612e^-5	0.303	INTRON alpha-Man-I	TF binding site BDTNP1_TFBS_dl mE1_TFBS_run
2L	10134393	2L_10134393_SNP [dm3] 2L_10134393_SNP [dm6]	T	C	5.629e^-5	0.303	INTRON CG44153
2L	7015674	2L_7015674_SNP [dm3] 2L_7015674_SNP [dm6]	A	G	5.633e^-5	0.303	SYNONYMOUS_CODING ade3 DOWNSTREAM CG43322	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12187186	2L_12187186_SNP [dm3] 2L_12187186_SNP [dm6]	A	T	5.651e^-5	0.303	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4592824	X_4592824_SNP [dm3] X_4698791_SNP [dm6]	A	T	5.659e^-5	0.303	UTR_3_PRIME ctp
X	12860750	X_12860750_DEL [dm3] X_12966717_DEL [dm6]	AA	A	5.662e^-5	0.303	INTERGENIC
2R	8435186	2R_8435186_SNP [dm3] 2R_12547681_SNP [dm6]	A	G	5.672e^-5	0.303	INTRON fra
2L	6454838	2L_6454838_SNP [dm3] 2L_6454838_SNP [dm6]	T	C	5.696e^-5	0.303	INTRON retm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	26430902	3R_26430902_SNP [dm3] 3R_30605180_SNP [dm6]	A	G	5.709e^-5	0.303	NON_SYNONYMOUS_CODING PH4alphaNE3
2R	17622113	2R_17622113_SNP [dm3] 2R_21734608_SNP [dm6]	C	G	5.719e^-5	0.303	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	20962463	X_20962463_SNP [dm3] X_21091436_SNP [dm6]	G	A	5.762e^-5	0.303	INTERGENIC
2L	6456580	2L_6456580_SNP [dm3] 2L_6456580_SNP [dm6]	G	C	5.763e^-5	0.303	NON_SYNONYMOUS_CODING frj UPSTREAM retm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	5200000	3L_5200000_SNP [dm3] 3L_5206900_SNP [dm6]	A	G	5.768e^-5	0.303	INTRON shep
3L	5200001	3L_5200001_SNP [dm3] 3L_5206901_SNP [dm6]	A	T	5.768e^-5	0.303	INTRON shep
3L	5197722	3L_5197722_SNP [dm3] 3L_5204622_SNP [dm6]	G	A	5.785e^-5	0.303	INTRON shep
3R	14085029	3R_14085029_SNP [dm3] 3R_18259307_SNP [dm6]	A	T	5.797e^-5	0.303	INTERGENIC	transposable element FlyBase
3R	14085249	3R_14085249_SNP [dm3] 3R_18259527_SNP [dm6]	A	T	5.797e^-5	0.303	INTERGENIC
3R	14085250	3R_14085250_SNP [dm3] 3R_18259528_SNP [dm6]	A	G	5.797e^-5	0.303	INTERGENIC
2L	4696985	2L_4696985_SNP [dm3] 2L_4696985_SNP [dm6]	C	T	5.801e^-5	0.303	INTRON CG34351
2L	5695578	2L_5695578_SNP [dm3] 2L_5695578_SNP [dm6]	G	A	5.801e^-5	0.303	INTERGENIC
2L	8138165	2L_8138165_SNP [dm3] 2L_8138165_SNP [dm6]	A	T	5.809e^-5	0.303	NON_SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4697777	2L_4697777_SNP [dm3] 2L_4697777_SNP [dm6]	A	T	5.811e^-5	0.303	INTRON CG34351
2R	17179503	2R_17179503_SNP [dm3] 2R_21291998_SNP [dm6]	G	A	5.860e^-5	0.304	SYNONYMOUS_CODING CG30392 DOWNSTREAM Sgf29	TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2R	19431010	2R_19431010_SNP [dm3] 2R_23543487_SNP [dm6]	T	A	5.897e^-5	0.304	NON_SYNONYMOUS_CODING Gr59f UPSTREAM CG30185	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19431073	2R_19431073_SNP [dm3] 2R_23543550_SNP [dm6]	G	A	5.897e^-5	0.304	UPSTREAM CG30185 INTRON Gr59f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19431802	2R_19431802_SNP [dm3] 2R_23544279_SNP [dm6]	G	C	5.897e^-5	0.304	NON_SYNONYMOUS_CODING CG30185 DOWNSTREAM wmd & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3786254	3L_3786254_SNP [dm3] 3L_3786254_SNP [dm6]	T	C	5.915e^-5	0.304	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
X	6192199	X_6192199_SNP [dm3] X_6298166_SNP [dm6]	T	C	5.995e^-5	0.307	SYNONYMOUS_CODING CG3815 DOWNSTREAM CG12219	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	19338720	3L_19338720_SNP [dm3] 3L_19345620_SNP [dm6]	C	T	6.062e^-5	0.31	SYNONYMOUS_CODING CG32206
2R	13539223	2R_13539223_SNP [dm3] 2R_17651718_SNP [dm6]	A	G	6.116e^-5	0.312	INTRON CCHa1-R	TF binding site mE1_TFBS_inv
3R	25937248	3R_25937248_SNP [dm3] 3R_30111526_SNP [dm6]	A	T	6.136e^-5	0.312	INTRON sima
2R	13020668	2R_13020668_SNP [dm3] 2R_17133163_SNP [dm6]	A	T	6.203e^-5	0.312	UPSTREAM Acp54A1 & 1 other INTERGENIC
X	6664973	X_6664973_SNP [dm3] X_6770940_SNP [dm6]	C	T	6.204e^-5	0.312	UPSTREAM COQ7 DOWNSTREAM shf & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
2L	4444154	2L_4444154_SNP [dm3] 2L_4444154_SNP [dm6]	A	G	6.213e^-5	0.312	NON_SYNONYMOUS_CODING morgue UPSTREAM Elp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	26347567	3R_26347567_SNP [dm3] 3R_30521845_SNP [dm6]	A	G	6.244e^-5	0.312	INTRON jdp
2L	11141137	2L_11141137_SNP [dm3] 2L_11141137_SNP [dm6]	C	A	6.249e^-5	0.312	INTRON Gyc32E
2L	2716772	2L_2716772_DEL [dm3] 2L_2716772_DEL [dm6]	TGCAGCCCCAACT...	T	6.252e^-5	0.312	INTRON CG31690
X	3908154	X_3908154_INS [dm3] X_4014121_INS [dm6]	C	CCAC	6.272e^-5	0.312	INTERGENIC
3L	5971333	3L_5971333_DEL [dm3] 3L_5978233_DEL [dm6]	CCTGTCGTC	C	6.274e^-5	0.312	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13122671	2R_13122671_SNP [dm3] 2R_17235166_SNP [dm6]	G	C	6.302e^-5	0.312	INTRON mbl	TF binding site mE1_TFBS_HSA
2L	17921802	2L_17921802_DEL [dm3] 2L_17921802_DEL [dm6]	TAT	T	6.322e^-5	0.312	INTERGENIC
X	18693062	X_18693062_SNP [dm3] X_18799029_SNP [dm6]	A	C	6.325e^-5	0.312	INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8805403	3L_8805403_SNP [dm3] 3L_8812303_SNP [dm6]	G	C	6.354e^-5	0.312	INTERGENIC
2L	2596907	2L_2596907_SNP [dm3] 2L_2596907_SNP [dm6]	G	C	6.360e^-5	0.312	INTERGENIC
X	11701920	X_11701920_INS [dm3] X_11807887_INS [dm6]	T	TT	6.383e^-5	0.312	UPSTREAM Hsc70-3 DOWNSTREAM CG1578 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2616102	3L_2616102_SNP [dm3] 3L_2616102_SNP [dm6]	G	C	6.435e^-5	0.312	INTRON Pxn	TF binding site mE1_TFBS_chinmo
3L	11066237	3L_11066237_SNP [dm3] 3L_11073137_SNP [dm6]	A	T	6.439e^-5	0.312	NON_SYNONYMOUS_CODING Mocs1 UTR_3_PRIME Mocs1 DOWNSTREAM l_3_01239
3R	10392270	3R_10392270_DEL [dm3] 3R_14566548_DEL [dm6]	TAAGACGTCTT...	T	6.458e^-5	0.312	UTR_3_PRIME CG31313 DOWNSTREAM CG31313 & 1 other
3R	27493543	3R_27493543_SNP [dm3] 3R_31667821_SNP [dm6]	C	T	6.460e^-5	0.312	INTERGENIC
2R	11981103	2R_11981103_INS [dm3] 2R_16093598_INS [dm6]	A	AA	6.467e^-5	0.312	INTRON Dg	TF binding site BDTNP1_TFBS_dl
2L	12643206	2L_12643206_SNP [dm3] 2L_12643206_SNP [dm6]	A	T	6.472e^-5	0.312	INTRON Ref2
2L	13055835	2L_13055835_SNP [dm3] 2L_13055835_SNP [dm6]	G	C	6.492e^-5	0.312	INTRON CG9932
3L	16874696	3L_16874696_SNP [dm3] 3L_16881596_SNP [dm6]	C	T	6.520e^-5	0.312	INTRON Lmpt
2L	1083822	2L_1083822_SNP [dm3] 2L_1083822_SNP [dm6]	C	G	6.525e^-5	0.312	UTR_3_PRIME Atg4a & 1 other DOWNSTREAM Atg4a
3R	15253734	3R_15253734_SNP [dm3] 3R_19428012_SNP [dm6]	G	C	6.548e^-5	0.312	INTRON CG31221
X	13529844	X_13529844_SNP [dm3] X_13635811_SNP [dm6]	A	G	6.589e^-5	0.312	INTRON NFAT
3R	22888652	3R_22888652_SNP [dm3] 3R_27062930_SNP [dm6]	C	T	6.596e^-5	0.312	UTR_3_PRIME CG34292 INTRON Nep5
3L	20786875	3L_20786875_SNP [dm3] 3L_20793775_SNP [dm6]	G	C	6.598e^-5	0.312	UPSTREAM Six4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	6422491	2L_6422491_SNP [dm3] 2L_6422491_SNP [dm6]	T	C	6.611e^-5	0.312	NON_SYNONYMOUS_CODING Tig
2L	8074733	2L_8074733_SNP [dm3] 2L_8074733_SNP [dm6]	A	G	6.637e^-5	0.312	UTR_3_PRIME Mcr DOWNSTREAM Trf
2R	3636363	2R_3636363_DEL [dm3] 2R_7748858_DEL [dm6]	CAAAC	C	6.654e^-5	0.312	INTRON CG30497 & 1 other
2R	3626822	2R_3626822_SNP [dm3] 2R_7739317_SNP [dm6]	A	T	6.658e^-5	0.312	UTR_3_PRIME CG45093 & 1 other	TF binding site mE1_TFBS_cad
2L	11693170	2L_11693170_SNP [dm3] 2L_11693170_SNP [dm6]	G	A	6.674e^-5	0.312	INTERGENIC	TF binding site mE1_TFBS_inv
2R	14547154	2R_14547154_SNP [dm3] 2R_18659649_SNP [dm6]	T	A	6.702e^-5	0.312	SYNONYMOUS_CODING Gint3 UTR_3_PRIME CG42306	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5183146	3R_5183146_SNP [dm3] 3R_9357424_SNP [dm6]	G	C	6.711e^-5	0.312	NON_SYNONYMOUS_CODING CG45050 UTR_3_PRIME CG43675 INTRON CG45050
2R	972899	2R_972899_DEL [dm3] 2R_5085394_DEL [dm6]	TT	T	6.757e^-5	0.313	INTERGENIC	transposable element FlyBase
2L	12277388	2L_12277388_SNP [dm3] 2L_12277388_SNP [dm6]	C	T	6.760e^-5	0.313	INTRON aret
3R	22885038	3R_22885038_DEL [dm3] 3R_27059316_DEL [dm6]	TT	T	6.771e^-5	0.313	INTRON Nep5
3L	19255763	3L_19255763_SNP [dm3] 3L_19262663_SNP [dm6]	T	C	6.787e^-5	0.313	UTR_3_PRIME Max DOWNSTREAM Max & 1 other	TF binding site mE1_TFBS_cad
2R	19431042	2R_19431042_SNP [dm3] 2R_23543519_SNP [dm6]	A	G	6.804e^-5	0.313	SYNONYMOUS_CODING Gr59f UPSTREAM CG30185	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6740705	2L_6740705_SNP [dm3] 2L_6740705_SNP [dm6]	G	A	6.845e^-5	0.313	UPSTREAM TTLL3A INTERGENIC
3R	26430991	3R_26430991_SNP [dm3] 3R_30605269_SNP [dm6]	A	T	6.867e^-5	0.313	NON_SYNONYMOUS_CODING PH4alphaNE3 UPSTREAM CG31016
3L	14268610	3L_14268610_SNP [dm3] 3L_14275510_SNP [dm6]	C	G	6.869e^-5	0.313	SYNONYMOUS_CODING fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26435943	3R_26435943_SNP [dm3] 3R_30610221_SNP [dm6]	C	T	6.893e^-5	0.313	UTR_3_PRIME CG31016
2L	15221690	2L_15221690_SNP [dm3] 2L_15221690_SNP [dm6]	T	C	6.900e^-5	0.313	INTERGENIC
2L	2210055	2L_2210055_SNP [dm3] 2L_2210055_SNP [dm6]	A	G	6.956e^-5	0.314	UTR_3_PRIME CG15385 UPSTREAM CG33124
3R	15261441	3R_15261441_SNP [dm3] 3R_19435719_SNP [dm6]	C	G	6.959e^-5	0.314	INTRON CG31221
2R	15205495	2R_15205495_SNP [dm3] 2R_19317990_SNP [dm6]	A	G	6.970e^-5	0.314	INTRON Rgk1
2L	5377325	2L_5377325_SNP [dm3] 2L_5377325_SNP [dm6]	A	G	6.993e^-5	0.314	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19849689	2L_19849689_SNP [dm3] 2L_19849689_SNP [dm6]	G	A	7.016e^-5	0.315	UPSTREAM sick INTRON sick	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3614020	2L_3614020_SNP [dm3] 2L_3614020_SNP [dm6]	C	A	7.039e^-5	0.315	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	1561328	2R_1561328_SNP [dm3] 2R_5673823_SNP [dm6]	A	C	7.063e^-5	0.315	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26920245	3R_26920245_SNP [dm3] 3R_31094523_SNP [dm6]	G	T	7.094e^-5	0.315	INTRON CG11317
X	6509967	X_6509967_SNP [dm3] X_6615934_SNP [dm6]	A	G	7.122e^-5	0.315	INTRON pigs
X	19164575	X_19164575_SNP [dm3] X_19270542_SNP [dm6]	C	T	7.159e^-5	0.315	SYNONYMOUS_CODING Vav	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_sens
X	9017656	X_9017656_SNP [dm3] X_9123623_SNP [dm6]	A	T	7.165e^-5	0.315	UTR_3_PRIME fend
3L	2000200	3L_2000200_SNP [dm3] 3L_2000200_SNP [dm6]	T	G	7.196e^-5	0.315	INTERGENIC
3L	15992564	3L_15992564_SNP [dm3] 3L_15999464_SNP [dm6]	G	A	7.205e^-5	0.315	INTRON CG5830
3L	3935808	3L_3935808_DEL [dm3] 3L_3935808_DEL [dm6]	ACAA	A	7.219e^-5	0.315	UPSTREAM Eip63F-1 DOWNSTREAM CG10866 EXON Eip63F-2
2L	14229768	2L_14229768_SNP [dm3] 2L_14229768_SNP [dm6]	T	C	7.250e^-5	0.315	INTRON Dyrk2	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	26435975	3R_26435975_SNP [dm3] 3R_30610253_SNP [dm6]	C	T	7.253e^-5	0.315	UTR_3_PRIME CG31016
3R	26437691	3R_26437691_SNP [dm3] 3R_30611969_SNP [dm6]	C	G	7.253e^-5	0.315	UPSTREAM CR45571 INTERGENIC
2L	10958217	2L_10958217_SNP [dm3] 2L_10958217_SNP [dm6]	A	T	7.304e^-5	0.315	INTRON dpr2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26431767	3R_26431767_INS [dm3] 3R_30606045_INS [dm6]	A	AG	7.306e^-5	0.315	UTR_3_PRIME PH4alphaNE3 UPSTREAM CG31016
2R	3624303	2R_3624303_SNP [dm3] 2R_7736798_SNP [dm6]	C	T	7.324e^-5	0.315	DOWNSTREAM CG30497 & 1 other INTERGENIC
2L	4935807	2L_4935807_SNP [dm3] 2L_4935807_SNP [dm6]	G	A	7.343e^-5	0.315	SYNONYMOUS_CODING hoe2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4935816	2L_4935816_SNP [dm3] 2L_4935816_SNP [dm6]	T	G	7.343e^-5	0.315	SYNONYMOUS_CODING hoe2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4935819	2L_4935819_SNP [dm3] 2L_4935819_SNP [dm6]	G	A	7.343e^-5	0.315	SYNONYMOUS_CODING hoe2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7704199	2L_7704199_SNP [dm3] 2L_7704199_SNP [dm6]	C	A	7.353e^-5	0.315	INTRON Tep3	TF binding site mE1_TFBS_sens
X	17217471	X_17217471_SNP [dm3] X_17323438_SNP [dm6]	T	A	7.374e^-5	0.315	UTR_3_PRIME B-H2
2R	13020496	2R_13020496_SNP [dm3] 2R_17132991_SNP [dm6]	T	A	7.380e^-5	0.315	UPSTREAM Acp54A1 INTERGENIC
2L	6142057	2L_6142057_SNP [dm3] 2L_6142057_SNP [dm6]	G	A	7.453e^-5	0.317	NON_SYNONYMOUS_CODING CG13991	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12839153	3R_12839153_SNP [dm3] 3R_17013431_SNP [dm6]	C	T	7.526e^-5	0.32	DOWNSTREAM CG8907 INTERGENIC
X	10267407	X_10267407_SNP [dm3] X_10373374_SNP [dm6]	G	A	7.542e^-5	0.32	SYNONYMOUS_CODING CG32686 INTRON CG17841
2L	7802148	2L_7802148_SNP [dm3] 2L_7802148_SNP [dm6]	T	A	7.598e^-5	0.32	UTR_3_PRIME cdc14 DOWNSTREAM cdc14 & 1 other
2R	16665660	2R_16665660_SNP [dm3] 2R_20778155_SNP [dm6]	A	G	7.598e^-5	0.32	UPSTREAM CG43710 DOWNSTREAM CG43711 INTERGENIC
3L	16872533	3L_16872533_SNP [dm3] 3L_16879433_SNP [dm6]	C	T	7.602e^-5	0.32	DOWNSTREAM CG32170 INTRON Lmpt
3L	22606857	3L_22606857_SNP [dm3] 3L_22613757_SNP [dm6]	A	T	7.620e^-5	0.32	INTRON CG14459
3R	14367339	3R_14367339_SNP [dm3] 3R_18541617_SNP [dm6]	C	T	7.668e^-5	0.321	INTRON fru
2R	18228093	2R_18228093_SNP [dm3] 2R_22340588_SNP [dm6]	A	C	7.698e^-5	0.322	SYNONYMOUS_CODING Liprin-gamma	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	13454568	2R_13454568_SNP [dm3] 2R_17567063_SNP [dm6]	A	T	7.715e^-5	0.322	SYNONYMOUS_CODING Ns2
X	2934641	X_2934641_SNP [dm3] X_3040608_SNP [dm6]	C	T	7.733e^-5	0.322	INTRON kirre
2R	6540322	2R_6540322_SNP [dm3] 2R_10652817_SNP [dm6]	A	C	7.742e^-5	0.322	INTERGENIC
2R	10238781	2R_10238781_SNP [dm3] 2R_14351276_SNP [dm6]	A	C	7.805e^-5	0.323	NON_SYNONYMOUS_CODING Shroom UPSTREAM CG8613	TF binding site mE1_TFBS_cad
3R	14367292	3R_14367292_SNP [dm3] 3R_18541570_SNP [dm6]	A	G	7.826e^-5	0.323	INTRON fru
3R	14367308	3R_14367308_SNP [dm3] 3R_18541586_SNP [dm6]	C	T	7.826e^-5	0.323	INTRON fru
2L	21723393	2L_21723393_SNP [dm3] 2L_21723393_SNP [dm6]	A	T	7.873e^-5	0.324	INTRON CG31619
2L	13122999	2L_13122999_SNP [dm3] 2L_13122999_SNP [dm6]	G	A	7.880e^-5	0.324	INTERGENIC
X	7991857	X_7991857_DEL [dm3] X_8097824_DEL [dm6]	TATAAGTT	T	7.975e^-5	0.326	INTRON CG2258	TF binding site mE1_TFBS_cad
X	8962400	X_8962400_SNP [dm3] X_9068367_SNP [dm6]	T	G	7.975e^-5	0.326	UPSTREAM CG15365 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22158675	3R_22158675_SNP [dm3] 3R_26332953_SNP [dm6]	C	G	7.992e^-5	0.326	INTRON CG33970
3L	16869929	3L_16869929_SNP [dm3] 3L_16876829_SNP [dm6]	T	G	8.002e^-5	0.326	UPSTREAM CG32170 INTRON Lmpt
2R	3636037	2R_3636037_SNP [dm3] 2R_7748532_SNP [dm6]	C	A	8.028e^-5	0.326	INTRON CG30497 & 1 other
2L	14262403	2L_14262403_SNP [dm3] 2L_14262403_SNP [dm6]	T	C	8.068e^-5	0.327	UPSTREAM wb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	5198440	3L_5198440_SNP [dm3] 3L_5205340_SNP [dm6]	G	A	8.172e^-5	0.327	INTRON shep
2L	6455714	2L_6455714_SNP [dm3] 2L_6455714_SNP [dm6]	A	G	8.179e^-5	0.327	UTR_5_PRIME retm UPSTREAM frj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	20870837	3L_20870837_SNP [dm3] 3L_20877737_SNP [dm6]	A	G	8.186e^-5	0.327	INTRON CG32432
2R	14697963	2R_14697963_SNP [dm3] 2R_18810458_SNP [dm6]	A	T	8.203e^-5	0.327	INTRON CG15096
3L	9089186	3L_9089186_SNP [dm3] 3L_9096086_SNP [dm6]	T	C	8.209e^-5	0.327	UPSTREAM CG13315 INTERGENIC
3L	9089198	3L_9089198_DEL [dm3] 3L_9096098_DEL [dm6]	ATA	T	8.209e^-5	0.327	UPSTREAM CG13315 INTERGENIC
2R	7066958	2R_7066958_SNP [dm3] 2R_11179453_SNP [dm6]	G	T	8.263e^-5	0.327	INTRON shn
3L	7020077	3L_7020077_SNP [dm3] 3L_7026977_SNP [dm6]	G	T	8.318e^-5	0.327	UPSTREAM CG17744 INTRON Mp
3L	14139695	3L_14139695_SNP [dm3] 3L_14146595_SNP [dm6]	T	C	8.344e^-5	0.327	INTERGENIC	regulatory region REDfly_CRMs
2L	15754728	2L_15754728_SNP [dm3] 2L_15754728_SNP [dm6]	C	A	8.365e^-5	0.327	SYNONYMOUS_CODING l_2_35Df	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7479400	3L_7479400_SNP [dm3] 3L_7486300_SNP [dm6]	A	C	8.381e^-5	0.327	SYNONYMOUS_CODING mthl6
3L	7479484	3L_7479484_SNP [dm3] 3L_7486384_SNP [dm6]	C	T	8.381e^-5	0.327	SYNONYMOUS_CODING mthl6
3L	7479492	3L_7479492_SNP [dm3] 3L_7486392_SNP [dm6]	A	G	8.381e^-5	0.327	NON_SYNONYMOUS_CODING mthl6
X	13529743	X_13529743_SNP [dm3] X_13635710_SNP [dm6]	T	C	8.387e^-5	0.327	INTRON NFAT
X	6116224	X_6116224_SNP [dm3] X_6222191_SNP [dm6]	T	C	8.392e^-5	0.327	SYNONYMOUS_CODING Efr DOWNSTREAM sqh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18245307	2R_18245307_SNP [dm3] 2R_22357802_SNP [dm6]	T	C	8.422e^-5	0.327	INTRON Liprin-gamma
3L	15992170	3L_15992170_SNP [dm3] 3L_15999070_SNP [dm6]	A	C	8.438e^-5	0.327	INTRON CG5830
3L	15992172	3L_15992172_SNP [dm3] 3L_15999072_SNP [dm6]	A	C	8.438e^-5	0.327	INTRON CG5830
2L	11693762	2L_11693762_SNP [dm3] 2L_11693762_SNP [dm6]	G	A	8.455e^-5	0.327	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11693767	2L_11693767_SNP [dm3] 2L_11693767_SNP [dm6]	A	G	8.455e^-5	0.327	INTERGENIC	TF binding site mE1_TFBS_inv
3R	27124221	3R_27124221_SNP [dm3] 3R_31298499_SNP [dm6]	A	G	8.467e^-5	0.327	INTERGENIC
3R	22885063	3R_22885063_SNP [dm3] 3R_27059341_SNP [dm6]	G	A	8.476e^-5	0.327	INTRON Nep5
3L	7392890	3L_7392890_SNP [dm3] 3L_7399790_SNP [dm6]	C	T	8.478e^-5	0.327	UTR_3_PRIME CG8562 UPSTREAM CG18417
3L	7475539	3L_7475539_SNP [dm3] 3L_7482439_SNP [dm6]	T	G	8.507e^-5	0.327	INTERGENIC
X	5243178	X_5243178_SNP [dm3] X_5349145_SNP [dm6]	C	T	8.523e^-5	0.327	INTRON SK
2L	10481913	2L_10481913_SNP [dm3] 2L_10481913_SNP [dm6]	T	C	8.530e^-5	0.327	SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2
3R	11128829	3R_11128829_SNP [dm3] 3R_15303107_SNP [dm6]	T	A	8.547e^-5	0.327	INTRON Tm1
3R	26800746	3R_26800746_SNP [dm3] 3R_30975024_SNP [dm6]	A	G	8.618e^-5	0.329	INTRON 5-HT7
3R	25638750	3R_25638750_SNP [dm3] 3R_29813028_SNP [dm6]	T	G	8.636e^-5	0.329	INTRON ca	TF binding site mE1_TFBS_chinmo
3L	5196718	3L_5196718_SNP [dm3] 3L_5203618_SNP [dm6]	T	A	8.715e^-5	0.332	INTRON shep
2R	9727204	2R_9727204_SNP [dm3] 2R_13839699_SNP [dm6]	G	C	8.751e^-5	0.332	UPSTREAM CG6357 DOWNSTREAM CG6347 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	6455432	2L_6455432_SNP [dm3] 2L_6455432_SNP [dm6]	T	G	8.773e^-5	0.332	UPSTREAM frj INTRON retm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26432202	3R_26432202_SNP [dm3] 3R_30606480_SNP [dm6]	C	T	8.809e^-5	0.332	SYNONYMOUS_CODING CG31016 DOWNSTREAM PH4alphaNE3
3L	3935924	3L_3935924_SNP [dm3] 3L_3935924_SNP [dm6]	G	A	8.865e^-5	0.332	UPSTREAM Eip63F-1 DOWNSTREAM CG10866 EXON Eip63F-2
2L	19044715	2L_19044715_SNP [dm3] 2L_19044715_SNP [dm6]	A	T	8.882e^-5	0.332	SYNONYMOUS_CODING Ttc19 UPSTREAM Acn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6455917	2L_6455917_SNP [dm3] 2L_6455917_SNP [dm6]	A	T	8.886e^-5	0.332	UTR_5_PRIME retm UPSTREAM frj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	11981011	2R_11981011_SNP [dm3] 2R_16093506_SNP [dm6]	T	A	8.900e^-5	0.332	INTRON Dg	TF binding site BDTNP1_TFBS_dl
2L	1161905	2L_1161905_DEL [dm3] 2L_1161905_DEL [dm6]	TA	T	8.903e^-5	0.332	INTRON CG5080	TF binding site mE1_TFBS_chinmo
3L	21841966	3L_21841966_DEL [dm3] 3L_21848866_DEL [dm6]	AA	A	8.924e^-5	0.332	INTRON mub
3R	18807436	3R_18807436_SNP [dm3] 3R_22981714_SNP [dm6]	G	A	9.007e^-5	0.332	SYNONYMOUS_CODING Nha2
3L	20853629	3L_20853629_SNP [dm3] 3L_20860529_SNP [dm6]	A	T	9.026e^-5	0.332	INTRON CG32432
X	6664866	X_6664866_SNP [dm3] X_6770833_SNP [dm6]	T	C	9.047e^-5	0.332	UPSTREAM COQ7 DOWNSTREAM shf & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
X	6664925	X_6664925_SNP [dm3] X_6770892_SNP [dm6]	T	G	9.047e^-5	0.332	UPSTREAM COQ7 DOWNSTREAM shf & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
X	6664929	X_6664929_SNP [dm3] X_6770896_SNP [dm6]	A	T	9.047e^-5	0.332	UPSTREAM COQ7 DOWNSTREAM shf & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
3L	3456586	3L_3456586_SNP [dm3] 3L_3456586_SNP [dm6]	T	G	9.082e^-5	0.332	INTRON eIF5B
X	17216031	X_17216031_SNP [dm3] X_17321998_SNP [dm6]	A	G	9.086e^-5	0.332	INTRON B-H2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA
3L	16765224	3L_16765224_SNP [dm3] 3L_16772124_SNP [dm6]	C	T	9.137e^-5	0.332	INTRON Nrt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7501906	3L_7501906_SNP [dm3] 3L_7508806_SNP [dm6]	T	C	9.142e^-5	0.332	INTERGENIC
3R	7300558	3R_7300558_SNP [dm3] 3R_11474836_SNP [dm6]	G	A	9.188e^-5	0.332	INTERGENIC	TF binding site mE1_TFBS_inv
2R	17244513	2R_17244513_SNP [dm3] 2R_21357008_SNP [dm6]	G	A	9.205e^-5	0.332	SYNONYMOUS_CODING cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26429984	3R_26429984_SNP [dm3] 3R_30604262_SNP [dm6]	G	T	9.235e^-5	0.332	NON_SYNONYMOUS_CODING PH4alphaNE3 DOWNSTREAM CG31021
3R	26430089	3R_26430089_SNP [dm3] 3R_30604367_SNP [dm6]	T	G	9.235e^-5	0.332	DOWNSTREAM CG31021 INTRON PH4alphaNE3
3R	26430101	3R_26430101_INS [dm3] 3R_30604379_INS [dm6]	T	CTAATG	9.235e^-5	0.332	DOWNSTREAM CG31021 INTRON PH4alphaNE3
3R	26430110	3R_26430110_SNP [dm3] 3R_30604388_SNP [dm6]	A	T	9.235e^-5	0.332	DOWNSTREAM CG31021 INTRON PH4alphaNE3
3R	26430111	3R_26430111_SNP [dm3] 3R_30604389_SNP [dm6]	C	T	9.235e^-5	0.332	DOWNSTREAM CG31021 INTRON PH4alphaNE3
3R	26430122	3R_26430122_SNP [dm3] 3R_30604400_SNP [dm6]	A	C	9.235e^-5	0.332	SPLICE_SITE_REGION PH4alphaNE3 DOWNSTREAM CG31021 INTRON PH4alphaNE3
3R	26430124	3R_26430124_SNP [dm3] 3R_30604402_SNP [dm6]	A	T	9.235e^-5	0.332	SPLICE_SITE_REGION PH4alphaNE3 DOWNSTREAM CG31021 INTRON PH4alphaNE3
3R	26430439	3R_26430439_SNP [dm3] 3R_30604717_SNP [dm6]	A	T	9.235e^-5	0.332	SYNONYMOUS_CODING PH4alphaNE3 DOWNSTREAM CG31021
3R	26430443	3R_26430443_SNP [dm3] 3R_30604721_SNP [dm6]	A	C	9.235e^-5	0.332	NON_SYNONYMOUS_CODING PH4alphaNE3 DOWNSTREAM CG31021
3R	14367294	3R_14367294_SNP [dm3] 3R_18541572_SNP [dm6]	C	A	9.282e^-5	0.332	INTRON fru
3R	14367304	3R_14367304_SNP [dm3] 3R_18541582_SNP [dm6]	A	T	9.282e^-5	0.332	INTRON fru
2R	13566333	2R_13566333_SNP [dm3] 2R_17678828_SNP [dm6]	A	G	9.296e^-5	0.332	INTRON Sema-1b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	13326053	2L_13326053_SNP [dm3] 2L_13326053_SNP [dm6]	C	A	9.379e^-5	0.334	INTRON CG43778
2L	10481906	2L_10481906_SNP [dm3] 2L_10481906_SNP [dm6]	C	A	9.396e^-5	0.334	SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2
3L	20870761	3L_20870761_SNP [dm3] 3L_20877661_SNP [dm6]	A	G	9.471e^-5	0.335	INTRON CG32432
3L	20870797	3L_20870797_SNP [dm3] 3L_20877697_SNP [dm6]	G	A	9.471e^-5	0.335	INTRON CG32432
3R	23086338	3R_23086338_SNP [dm3] 3R_27260616_SNP [dm6]	T	C	9.495e^-5	0.335	SYNONYMOUS_CODING woc UPSTREAM woc EXON CR44049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8910704	3R_8910704_SNP [dm3] 3R_13084982_SNP [dm6]	T	C	9.516e^-5	0.335	UPSTREAM CR44967 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	13679415	X_13679415_SNP [dm3] X_13785382_SNP [dm6]	T	G	9.522e^-5	0.335	INTRON inaE
3L	6917540	3L_6917540_SNP [dm3] 3L_6924440_SNP [dm6]	C	G	9.524e^-5	0.335	INTERGENIC
X	16908432	X_16908432_SNP [dm3] X_17014399_SNP [dm6]	C	T	9.533e^-5	0.335	INTRON CG45002
3R	26090608	3R_26090608_SNP [dm3] 3R_30264886_SNP [dm6]	C	T	9.579e^-5	0.335	INTERGENIC	silencer mE1_HDAC_PRE
4	264631	4_264631_DEL [dm3] 4_244005_DEL [dm6]	AACGTTAGTAACAGAGAA...	A	9.587e^-5	0.335	INTRON CG1674
2L	7802011	2L_7802011_SNP [dm3] 2L_7802011_SNP [dm6]	A	T	9.600e^-5	0.335	UTR_3_PRIME r2d2 & 1 other DOWNSTREAM cdc14 & 1 other
X	15743479	X_15743479_SNP [dm3] X_15849446_SNP [dm6]	C	T	9.683e^-5	0.337	UPSTREAM sun DOWNSTREAM UBL3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6117939	X_6117939_SNP [dm3] X_6223906_SNP [dm6]	A	G	9.724e^-5	0.337	SYNONYMOUS_CODING sqh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	6118045	X_6118045_SNP [dm3] X_6224012_SNP [dm6]	G	A	9.724e^-5	0.337	UTR_5_PRIME sqh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	14133975	3L_14133975_SNP [dm3] 3L_14140875_SNP [dm6]	T	C	9.733e^-5	0.337	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	3618407	2R_3618407_SNP [dm3] 2R_7730902_SNP [dm6]	C	T	9.738e^-5	0.337	INTRON CG18812
2L	4443670	2L_4443670_SNP [dm3] 2L_4443670_SNP [dm6]	T	G	9.785e^-5	0.338	SYNONYMOUS_CODING morgue DOWNSTREAM CG15432	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	14488678	2R_14488678_SNP [dm3] 2R_18601173_SNP [dm6]	A	G	9.812e^-5	0.338	INTRON GEFmeso
3R	4308670	3R_4308670_SNP [dm3] 3R_8482948_SNP [dm6]	A	G	9.814e^-5	0.338	INTERGENIC
2L	9983797	2L_9983797_SNP [dm3] 2L_9983797_SNP [dm6]	A	T	9.874e^-5	0.339	UPSTREAM bib EXON CR13130	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	11693755	2L_11693755_SNP [dm3] 2L_11693755_SNP [dm6]	T	C	9.951e^-5	0.341	INTERGENIC	TF binding site mE1_TFBS_inv
2R	7577076	2R_7577076_SNP [dm3] 2R_11689571_SNP [dm6]	T	C	1.000e^-4	0.342	SYNONYMOUS_CODING wal	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19164727	X_19164727_SNP [dm3] X_19270694_SNP [dm6]	A	G	1.002e^-4	0.342	SYNONYMOUS_CODING Vav	TF binding site BDTNP1_TFBS_da
2L	19039382	2L_19039382_SNP [dm3] 2L_19039382_SNP [dm6]	G	T	1.006e^-4	0.342	SYNONYMOUS_CODING mib2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20308887	X_20308887_SNP [dm3] X_20437860_SNP [dm6]	A	G	1.006e^-4	0.342	INTRON CG1695
3R	17942938	3R_17942938_SNP [dm3] 3R_22117216_SNP [dm6]	T	G	1.009e^-4	0.343	NON_SYNONYMOUS_CODING Ir94b DOWNSTREAM Ir94c
2L	2475360	2L_2475360_SNP [dm3] 2L_2475360_SNP [dm6]	C	A	1.013e^-4	0.343	INTERGENIC	regulatory region REDfly_CRMs
2L	6450306	2L_6450306_SNP [dm3] 2L_6450306_SNP [dm6]	G	A	1.014e^-4	0.343	INTRON retm
2L	7990457	2L_7990457_SNP [dm3] 2L_7990457_SNP [dm6]	C	T	1.019e^-4	0.344	DOWNSTREAM pes INTRON pes	TF binding site mE1_TFBS_inv
3R	24356146	3R_24356146_SNP [dm3] 3R_28530424_SNP [dm6]	C	T	1.021e^-4	0.344	SYNONYMOUS_CODING Ppn	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18264553	2R_18264553_SNP [dm3] 2R_22377048_SNP [dm6]	C	T	1.030e^-4	0.347	SYNONYMOUS_CODING Rtf1	TF binding site mE1_TFBS_sens
2R	20518354	2R_20518354_SNP [dm3] 2R_24630831_SNP [dm6]	G	T	1.038e^-4	0.347	UPSTREAM Cyp9c1 DOWNSTREAM CR43787 INTRON CG13594
3R	24343679	3R_24343679_INS [dm3] 3R_28517957_INS [dm6]	C	CCGGATCAAATG...	1.040e^-4	0.347	INTRON Dhc98D	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12702098	3L_12702098_SNP [dm3] 3L_12708998_SNP [dm6]	C	T	1.040e^-4	0.347	SYNONYMOUS_CODING mirr UTR_3_PRIME mirr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4735001	2L_4735001_SNP [dm3] 2L_4735001_SNP [dm6]	G	A	1.041e^-4	0.347	UTR_3_PRIME CG15630 UPSTREAM CG15631
X	6117795	X_6117795_SNP [dm3] X_6223762_SNP [dm6]	C	T	1.041e^-4	0.347	SYNONYMOUS_CODING sqh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	17235521	2R_17235521_SNP [dm3] 2R_21348016_SNP [dm6]	C	T	1.044e^-4	0.347	UPSTREAM CG9822 DOWNSTREAM CG17974 INTERGENIC
2R	9643936	2R_9643936_SNP [dm3] 2R_13756431_SNP [dm6]	G	A	1.046e^-4	0.348	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_cad
3L	12410223	3L_12410223_SNP [dm3] 3L_12417123_SNP [dm6]	T	A	1.053e^-4	0.348	INTRON ArfGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9278713	2L_9278713_SNP [dm3] 2L_9278713_SNP [dm6]	G	A	1.055e^-4	0.348	INTRON Ggamma30A
2L	14262439	2L_14262439_SNP [dm3] 2L_14262439_SNP [dm6]	T	C	1.056e^-4	0.348	UPSTREAM wb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	14262502	2L_14262502_SNP [dm3] 2L_14262502_SNP [dm6]	C	T	1.056e^-4	0.348	UPSTREAM wb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	5072552	3L_5072552_SNP [dm3] 3L_5072552_SNP [dm6]	A	G	1.062e^-4	0.349	INTRON Con
3L	6615396	3L_6615396_SNP [dm3] 3L_6622296_SNP [dm6]	T	A	1.063e^-4	0.349	INTERGENIC
3L	5195420	3L_5195420_SNP [dm3] 3L_5202320_SNP [dm6]	C	T	1.063e^-4	0.349	UPSTREAM shep INTRON shep
2L	4362143	2L_4362143_SNP [dm3] 2L_4362143_SNP [dm6]	G	A	1.070e^-4	0.35	UTR_5_PRIME Traf4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15525294	X_15525294_SNP [dm3] X_15631261_SNP [dm6]	G	A	1.076e^-4	0.35	INTRON sog	TF binding site BDTNP1_TFBS_dl
2L	8370131	2L_8370131_SNP [dm3] 2L_8370131_SNP [dm6]	T	A	1.077e^-4	0.35	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
2L	8370138	2L_8370138_SNP [dm3] 2L_8370138_SNP [dm6]	C	G	1.077e^-4	0.35	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
2L	6418673	2L_6418673_SNP [dm3] 2L_6418673_SNP [dm6]	G	A	1.080e^-4	0.35	INTRON Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12964705	3R_12964705_SNP [dm3] 3R_17138983_SNP [dm6]	G	A	1.080e^-4	0.35	UPSTREAM CG5265 DOWNSTREAM CG5255 INTERGENIC
2L	18282887	2L_18282887_SNP [dm3] 2L_18282887_SNP [dm6]	G	A	1.083e^-4	0.35	INTERGENIC
3R	26430132	3R_26430132_SNP [dm3] 3R_30604410_SNP [dm6]	A	C	1.085e^-4	0.35	SYNONYMOUS_CODING PH4alphaNE3 DOWNSTREAM CG31021
X	21220692	X_21220692_SNP [dm3] X_21349665_SNP [dm6]	G	A	1.087e^-4	0.35	SYNONYMOUS_CODING pen UPSTREAM sol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	26430045	3R_26430045_SNP [dm3] 3R_30604323_SNP [dm6]	G	A	1.088e^-4	0.35	NON_SYNONYMOUS_CODING PH4alphaNE3 DOWNSTREAM CG31021
3R	26430093	3R_26430093_SNP [dm3] 3R_30604371_SNP [dm6]	A	G	1.088e^-4	0.35	DOWNSTREAM CG31021 INTRON PH4alphaNE3
3R	26430326	3R_26430326_SNP [dm3] 3R_30604604_SNP [dm6]	C	A	1.088e^-4	0.35	DOWNSTREAM CG31021 INTRON PH4alphaNE3
3L	22249222	3L_22249222_SNP [dm3] 3L_22256122_SNP [dm6]	C	A	1.091e^-4	0.35	INTERGENIC
2L	15137898	2L_15137898_INS [dm3] 2L_15137898_INS [dm6]	T	TA	1.091e^-4	0.35	INTERGENIC
2L	8363132	2L_8363132_SNP [dm3] 2L_8363132_SNP [dm6]	G	T	1.099e^-4	0.35	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16434539	X_16434539_SNP [dm3] X_16540506_SNP [dm6]	C	T	1.102e^-4	0.35	SYNONYMOUS_CODING CG9903
3L	3855325	3L_3855325_DEL [dm3] 3L_3855325_DEL [dm6]	GC	G	1.103e^-4	0.35	INTRON Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11227498	3L_11227498_SNP [dm3] 3L_11234398_SNP [dm6]	A	G	1.104e^-4	0.35	NON_SYNONYMOUS_CODING Ir68a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22606957	3L_22606957_SNP [dm3] 3L_22613857_SNP [dm6]	C	T	1.106e^-4	0.35	INTRON CG14459
2R	4460996	2R_4460996_SNP [dm3] 2R_8573491_SNP [dm6]	C	G	1.107e^-4	0.35	UTR_3_PRIME CG42326	TF binding site mE1_TFBS_cad
2L	7994446	2L_7994446_SNP [dm3] 2L_7994446_SNP [dm6]	T	C	1.107e^-4	0.35	UTR_3_PRIME CG7227 UPSTREAM pes & 1 other DOWNSTREAM CG7227	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_Trl
3L	8803672	3L_8803672_SNP [dm3] 3L_8810572_SNP [dm6]	T	A	1.113e^-4	0.351	SYNONYMOUS_CODING CG13309	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21337588	X_21337588_SNP [dm3] X_21466561_SNP [dm6]	C	G	1.114e^-4	0.351	DOWNSTREAM CR45507 INTERGENIC
X	15739770	X_15739770_SNP [dm3] X_15845737_SNP [dm6]	C	A	1.119e^-4	0.352	SYNONYMOUS_CODING CG8578
X	16906383	X_16906383_SNP [dm3] X_17012350_SNP [dm6]	G	C	1.121e^-4	0.352	INTRON CG45002
X	8659750	X_8659750_SNP [dm3] X_8765717_SNP [dm6]	T	C	1.125e^-4	0.352	INTRON Lim1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	8388608	3L_8388608_SNP [dm3] 3L_8395508_SNP [dm6]	A	G	1.127e^-4	0.352	UPSTREAM CG7120 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	5390776	2L_5390776_SNP [dm3] 2L_5390776_SNP [dm6]	C	A	1.127e^-4	0.352	INTERGENIC
X	21337595	X_21337595_SNP [dm3] X_21466568_SNP [dm6]	G	T	1.129e^-4	0.353	DOWNSTREAM CR45507 INTERGENIC
2L	6457429	2L_6457429_SNP [dm3] 2L_6457429_SNP [dm6]	G	C	1.133e^-4	0.353	SYNONYMOUS_CODING frj	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26346813	3R_26346813_SNP [dm3] 3R_30521091_SNP [dm6]	G	A	1.134e^-4	0.353	INTRON jdp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6451307	2L_6451307_SNP [dm3] 2L_6451307_SNP [dm6]	G	A	1.136e^-4	0.353	INTRON retm	TF binding site mE1_TFBS_cad
2L	10349704	2L_10349704_SNP [dm3] 2L_10349704_SNP [dm6]	T	C	1.141e^-4	0.354	INTRON CG34367
2L	12265646	2L_12265646_SNP [dm3] 2L_12265646_SNP [dm6]	T	C	1.157e^-4	0.357	INTRON aret
3R	23889837	3R_23889837_SNP [dm3] 3R_28064115_SNP [dm6]	G	A	1.157e^-4	0.357	INTRON CG34362
X	13356076	X_13356076_SNP [dm3] X_13462043_SNP [dm6]	A	T	1.160e^-4	0.358	INTRON Neto
3R	20905498	3R_20905498_SNP [dm3] 3R_25079776_SNP [dm6]	G	A	1.169e^-4	0.36	INTERGENIC
3L	12201510	3L_12201510_SNP [dm3] 3L_12208410_SNP [dm6]	C	A	1.173e^-4	0.36	DOWNSTREAM app INTRON app
2R	14488597	2R_14488597_SNP [dm3] 2R_18601092_SNP [dm6]	G	A	1.173e^-4	0.36	INTRON GEFmeso
3R	18776394	3R_18776394_SNP [dm3] 3R_22950672_SNP [dm6]	C	A	1.179e^-4	0.361	INTRON klg
2L	14268995	2L_14268995_SNP [dm3] 2L_14268995_SNP [dm6]	G	C	1.180e^-4	0.361	INTRON wb	TF binding site mE1_TFBS_sens
3R	7147970	3R_7147970_SNP [dm3] 3R_11322248_SNP [dm6]	G	A	1.181e^-4	0.361	INTERGENIC
2R	16758540	2R_16758540_SNP [dm3] 2R_20871035_SNP [dm6]	T	C	1.182e^-4	0.361	DOWNSTREAM IM14 INTRON Ipk1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	763650	3L_763650_SNP [dm3] 3L_763650_SNP [dm6]	C	A	1.194e^-4	0.361	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20255988	X_20255988_SNP [dm3] X_20384961_SNP [dm6]	T	A	1.198e^-4	0.361	UPSTREAM CR34311 INTERGENIC
2R	3595210	2R_3595210_SNP [dm3] 2R_7707705_SNP [dm6]	T	A	1.204e^-4	0.361	INTRON tor
2L	4722406	2L_4722406_SNP [dm3] 2L_4722406_SNP [dm6]	G	A	1.206e^-4	0.361	UTR_3_PRIME CG34351
2R	13131845	2R_13131845_SNP [dm3] 2R_17244340_SNP [dm6]	A	C	1.208e^-4	0.361	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	20922067	3L_20922067_SNP [dm3] 3L_20928967_SNP [dm6]	A	G	1.208e^-4	0.361	SYNONYMOUS_CODING CG10589 INTRON fng	TF binding site mE1_TFBS_sens
3L	20842991	3L_20842991_SNP [dm3] 3L_20849891_SNP [dm6]	T	A	1.211e^-4	0.361	INTRON CG32432
3R	14711270	3R_14711270_SNP [dm3] 3R_18885548_SNP [dm6]	T	G	1.215e^-4	0.361	INTERGENIC
3L	5213074	3L_5213074_SNP [dm3] 3L_5219974_SNP [dm6]	C	T	1.215e^-4	0.361	INTRON shep
2L	7435903	2L_7435903_SNP [dm3] 2L_7435903_SNP [dm6]	T	C	1.219e^-4	0.361	INTERGENIC
3L	5195181	3L_5195181_SNP [dm3] 3L_5202081_SNP [dm6]	A	C	1.223e^-4	0.361	UPSTREAM shep INTRON shep
3L	5196722	3L_5196722_MNP [dm3] 3L_5203622_MNP [dm6]	GTA	CCT	1.223e^-4	0.361	INTRON shep
3L	5196850	3L_5196850_SNP [dm3] 3L_5203750_SNP [dm6]	T	G	1.223e^-4	0.361	INTRON shep
3L	5196946	3L_5196946_SNP [dm3] 3L_5203846_SNP [dm6]	A	G	1.223e^-4	0.361	INTRON shep
3L	5196966	3L_5196966_SNP [dm3] 3L_5203866_SNP [dm6]	T	A	1.223e^-4	0.361	INTRON shep
3L	5196991	3L_5196991_SNP [dm3] 3L_5203891_SNP [dm6]	G	A	1.223e^-4	0.361	INTRON shep
3L	5197033	3L_5197033_DEL [dm3] 3L_5203933_DEL [dm6]	CAA	C	1.223e^-4	0.361	INTRON shep
3L	5197051	3L_5197051_SNP [dm3] 3L_5203951_SNP [dm6]	C	G	1.223e^-4	0.361	INTRON shep
3L	5197609	3L_5197609_SNP [dm3] 3L_5204509_SNP [dm6]	A	G	1.223e^-4	0.361	INTRON shep
3L	5198459	3L_5198459_SNP [dm3] 3L_5205359_SNP [dm6]	A	T	1.223e^-4	0.361	INTRON shep
3R	14773850	3R_14773850_SNP [dm3] 3R_18948128_SNP [dm6]	A	G	1.226e^-4	0.362	INTRON CG42613
X	15794118	X_15794118_SNP [dm3] X_15900085_SNP [dm6]	C	T	1.229e^-4	0.362	INTRON shi
3L	7609976	3L_7609976_SNP [dm3] 3L_7616876_SNP [dm6]	C	G	1.230e^-4	0.362	INTRON CG33275
2R	3618312	2R_3618312_SNP [dm3] 2R_7730807_SNP [dm6]	T	A	1.235e^-4	0.362	INTRON CG18812
2L	8362546	2L_8362546_SNP [dm3] 2L_8362546_SNP [dm6]	G	C	1.237e^-4	0.362	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	22601052	3L_22601052_SNP [dm3] 3L_22607952_SNP [dm6]	G	C	1.242e^-4	0.363	DOWNSTREAM CG6914 INTRON CG14459
X	3779449	X_3779449_SNP [dm3] X_3885416_SNP [dm6]	C	T	1.243e^-4	0.363	INTRON CG15239
2R	6660136	2R_6660136_INS [dm3] 2R_10772631_INS [dm6]	C	CC	1.249e^-4	0.364	INTRON CG33144
2L	18350395	2L_18350395_SNP [dm3] 2L_18350395_SNP [dm6]	C	G	1.252e^-4	0.364	INTRON Fas3
2L	8903702	2L_8903702_SNP [dm3] 2L_8903702_SNP [dm6]	T	A	1.256e^-4	0.364	INTRON CG34398
X	6509991	X_6509991_SNP [dm3] X_6615958_SNP [dm6]	G	A	1.260e^-4	0.364	INTRON pigs
X	20191240	X_20191240_SNP [dm3] X_20320213_SNP [dm6]	G	A	1.261e^-4	0.364	INTRON CG1504
2L	14179695	2L_14179695_SNP [dm3] 2L_14179695_SNP [dm6]	G	A	1.261e^-4	0.364	INTRON CG43333
3R	8682915	3R_8682915_SNP [dm3] 3R_12857193_SNP [dm6]	T	C	1.264e^-4	0.364	INTRON CG10126
2L	1901983	2L_1901983_SNP [dm3] 2L_1901983_SNP [dm6]	C	A	1.264e^-4	0.364	INTRON CG7337
2L	630830	2L_630830_SNP [dm3] 2L_630830_SNP [dm6]	C	T	1.265e^-4	0.364	INTERGENIC
2R	10423941	2R_10423941_INS [dm3] 2R_14536436_INS [dm6]	C	CT	1.269e^-4	0.364	INTRON ttv
2R	10423949	2R_10423949_SNP [dm3] 2R_14536444_SNP [dm6]	T	C	1.269e^-4	0.364	INTRON ttv
2R	10423951	2R_10423951_SNP [dm3] 2R_14536446_SNP [dm6]	C	T	1.269e^-4	0.364	INTRON ttv
X	17423175	X_17423175_SNP [dm3] X_17529142_SNP [dm6]	A	G	1.273e^-4	0.364	INTRON CG43658
3L	16877415	3L_16877415_SNP [dm3] 3L_16884315_SNP [dm6]	T	A	1.284e^-4	0.367	INTRON Lmpt
2R	1546002	2R_1546002_SNP [dm3] 2R_5658497_SNP [dm6]	C	A	1.287e^-4	0.367	INTRON Not3
3L	12630111	3L_12630111_SNP [dm3] 3L_12637011_SNP [dm6]	T	A	1.291e^-4	0.368	INTRON CR32111
2R	16537420	2R_16537420_SNP [dm3] 2R_20649915_SNP [dm6]	A	T	1.300e^-4	0.37	INTRON Lrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	16373745	2R_16373745_SNP [dm3] 2R_20486240_SNP [dm6]	A	T	1.307e^-4	0.371	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19905669	2L_19905669_SNP [dm3] 2L_19905669_SNP [dm6]	A	T	1.314e^-4	0.371	INTRON sick
3R	25545148	3R_25545148_SNP [dm3] 3R_29719426_SNP [dm6]	C	T	1.318e^-4	0.371	INTRON CG15506	regulatory region REDfly_CRMs
3L	20514175	3L_20514175_SNP [dm3] 3L_20521075_SNP [dm6]	C	T	1.318e^-4	0.371	UTR_5_PRIME CG5104 UPSTREAM mTerf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11533809	3L_11533809_SNP [dm3] 3L_11540709_SNP [dm6]	T	C	1.318e^-4	0.371	INTRON Mob2	TF binding site mE1_TFBS_inv
3L	5200406	3L_5200406_SNP [dm3] 3L_5207306_SNP [dm6]	A	C	1.322e^-4	0.371	INTRON shep
X	16426962	X_16426962_SNP [dm3] X_16532929_SNP [dm6]	T	C	1.323e^-4	0.371	INTRON para
4	192342	4_192342_SNP [dm3] 4_171716_SNP [dm6]	C	A	1.323e^-4	0.371	SYNONYMOUS_CODING CG33978 INTRON CG33978	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
3R	26347859	3R_26347859_DEL [dm3] 3R_30522137_DEL [dm6]	CCC	A	1.324e^-4	0.371	INTRON jdp
2R	10602563	2R_10602563_SNP [dm3] 2R_14715058_SNP [dm6]	C	A	1.327e^-4	0.371	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10602670	2R_10602670_SNP [dm3] 2R_14715165_SNP [dm6]	G	C	1.327e^-4	0.371	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17705585	3L_17705585_SNP [dm3] 3L_17712485_SNP [dm6]	T	A	1.330e^-4	0.371	INTRON Ccn
X	14387893	X_14387893_SNP [dm3] X_14493860_SNP [dm6]	G	C	1.333e^-4	0.371	INTERGENIC
2L	14441349	2L_14441349_INS [dm3] 2L_14441349_INS [dm6]	A	ATGTA	1.334e^-4	0.371	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8329397	2L_8329397_DEL [dm3] 2L_8329397_DEL [dm6]	AAAA	T	1.336e^-4	0.371	INTRON CG14275
2R	14198297	2R_14198297_SNP [dm3] 2R_18310792_SNP [dm6]	T	C	1.337e^-4	0.371	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24881071	3R_24881071_SNP [dm3] 3R_29055349_SNP [dm6]	G	C	1.341e^-4	0.372	NON_SYNONYMOUS_CODING CG11843 UPSTREAM Sirt7	TF binding site BDTNP1_TFBS_dl
3L	7508737	3L_7508737_SNP [dm3] 3L_7515637_SNP [dm6]	G	A	1.349e^-4	0.373	SPLICE_SITE_REGION CG7546 INTRON CG7546
2L	9037510	2L_9037510_SNP [dm3] 2L_9037510_SNP [dm6]	G	A	1.350e^-4	0.373	INTERGENIC
3R	26431713	3R_26431713_SNP [dm3] 3R_30605991_SNP [dm6]	C	T	1.351e^-4	0.373	UTR_3_PRIME PH4alphaNE3 UPSTREAM CG31016
3L	8758667	3L_8758667_SNP [dm3] 3L_8765567_SNP [dm6]	T	C	1.352e^-4	0.373	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	2041554	3L_2041554_SNP [dm3] 3L_2041554_SNP [dm6]	C	T	1.366e^-4	0.374	INTRON sls
2L	4458674	2L_4458674_SNP [dm3] 2L_4458674_SNP [dm6]	C	A	1.367e^-4	0.374	UTR_3_PRIME mRpL27 UPSTREAM snoRNA:Me18S-C1831 & 1 other DOWNSTREAM mRpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6530546	2L_6530546_SNP [dm3] 2L_6530546_SNP [dm6]	A	C	1.367e^-4	0.374	UPSTREAM eya INTRON eya	TF binding site BDTNP1_TFBS_twi
2L	9871630	2L_9871630_DEL [dm3] 2L_9871630_DEL [dm6]	CGGC	C	1.367e^-4	0.374	INTRON nAChRalpha6
2L	9871636	2L_9871636_SNP [dm3] 2L_9871636_SNP [dm6]	A	G	1.367e^-4	0.374	INTRON nAChRalpha6
3L	2827929	3L_2827929_SNP [dm3] 3L_2827929_SNP [dm6]	C	G	1.371e^-4	0.375	INTRON CG43444
2L	22733655	2L_22733655_SNP [dm3] 2L_22840923_SNP [dm6]	G	A	1.373e^-4	0.375	INTERGENIC
X	16225005	X_16225005_SNP [dm3] X_16330972_SNP [dm6]	C	T	1.377e^-4	0.375	UPSTREAM CG9919 DOWNSTREAM CG9921 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19430818	2R_19430818_SNP [dm3] 2R_23543295_SNP [dm6]	A	G	1.387e^-4	0.376	NON_SYNONYMOUS_CODING Gr59f UPSTREAM Gr59e & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19430823	2R_19430823_SNP [dm3] 2R_23543300_SNP [dm6]	A	G	1.387e^-4	0.376	SYNONYMOUS_CODING Gr59f UPSTREAM Gr59e & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19430852	2R_19430852_SNP [dm3] 2R_23543329_SNP [dm6]	C	T	1.387e^-4	0.376	NON_SYNONYMOUS_CODING Gr59f UPSTREAM Gr59e & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6046492	2L_6046492_DEL [dm3] 2L_6046492_DEL [dm6]	AG	A	1.389e^-4	0.376	UPSTREAM ade2 & 1 other DOWNSTREAM slmo & 1 other INTERGENIC
3R	7147953	3R_7147953_SNP [dm3] 3R_11322231_SNP [dm6]	A	T	1.390e^-4	0.376	INTERGENIC
2L	4406008	2L_4406008_SNP [dm3] 2L_4406008_SNP [dm6]	C	G	1.402e^-4	0.376	UTR_3_PRIME CG15431	TF binding site mE1_TFBS_cad
3L	5195085	3L_5195085_SNP [dm3] 3L_5201985_SNP [dm6]	C	T	1.404e^-4	0.376	UPSTREAM shep INTRON shep
3L	5196909	3L_5196909_SNP [dm3] 3L_5203809_SNP [dm6]	T	C	1.404e^-4	0.376	INTRON shep
3L	5198085	3L_5198085_SNP [dm3] 3L_5204985_SNP [dm6]	A	G	1.404e^-4	0.376	INTRON shep
2R	1874679	2R_1874679_SNP [dm3] 2R_5987174_SNP [dm6]	C	T	1.408e^-4	0.376	INTRON Src42A
2R	17246651	2R_17246651_SNP [dm3] 2R_21359146_SNP [dm6]	G	T	1.408e^-4	0.376	SYNONYMOUS_CODING cv-2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7706913	2L_7706913_SNP [dm3] 2L_7706913_SNP [dm6]	A	G	1.408e^-4	0.376	SPLICE_SITE_REGION Tep3 SYNONYMOUS_CODING Tep3	TF binding site mE1_TFBS_inv
3R	23007772	3R_23007772_SNP [dm3] 3R_27182050_SNP [dm6]	A	G	1.410e^-4	0.376	INTRON Ser
2L	8188367	2L_8188367_SNP [dm3] 2L_8188367_SNP [dm6]	C	T	1.411e^-4	0.376	SYNONYMOUS_CODING Piezo
3L	22968571	3L_22968571_SNP [dm3] 3L_22975471_SNP [dm6]	A	T	1.411e^-4	0.376	INTERGENIC
2R	16863161	2R_16863161_SNP [dm3] 2R_20975656_SNP [dm6]	A	G	1.418e^-4	0.377	INTRON CG34115	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	25933477	3R_25933477_SNP [dm3] 3R_30107755_SNP [dm6]	C	T	1.420e^-4	0.377	INTRON sima
3L	22597545	3L_22597545_SNP [dm3] 3L_22604445_SNP [dm6]	T	G	1.425e^-4	0.377	INTRON CG14459
2R	13020654	2R_13020654_SNP [dm3] 2R_17133149_SNP [dm6]	T	A	1.425e^-4	0.377	UPSTREAM Acp54A1 & 1 other INTERGENIC
X	14307174	X_14307174_SNP [dm3] X_14413141_SNP [dm6]	A	G	1.426e^-4	0.377	INTRON dpr8	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	10143299	X_10143299_SNP [dm3] X_10249266_SNP [dm6]	G	C	1.430e^-4	0.378	INTRON Hk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
4	325836	4_325836_INS [dm3] 4_305210_INS [dm6]	T	TT	1.434e^-4	0.378	INTRON Syt7	TF binding site BDTNP1_TFBS_dl
3R	4599043	3R_4599043_SNP [dm3] 3R_8773321_SNP [dm6]	G	T	1.437e^-4	0.378	UPSTREAM CG34301 & 1 other DOWNSTREAM Pif1B & 1 other INTERGENIC
2L	15223891	2L_15223891_SNP [dm3] 2L_15223891_SNP [dm6]	C	T	1.437e^-4	0.378	INTERGENIC
X	10489999	X_10489999_SNP [dm3] X_10595966_SNP [dm6]	T	A	1.438e^-4	0.378	UPSTREAM CG2124 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26431272	3R_26431272_SNP [dm3] 3R_30605550_SNP [dm6]	A	C	1.439e^-4	0.378	NON_SYNONYMOUS_CODING PH4alphaNE3 UPSTREAM CG31016
2L	2081934	2L_2081934_SNP [dm3] 2L_2081934_SNP [dm6]	A	G	1.446e^-4	0.378	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3	TF binding site mE1_TFBS_inv
2L	14340685	2L_14340685_SNP [dm3] 2L_14340685_SNP [dm6]	G	C	1.455e^-4	0.378	DOWNSTREAM CG15286 INTRON CG33090
3L	12260199	3L_12260199_SNP [dm3] 3L_12267099_SNP [dm6]	G	C	1.463e^-4	0.378	UPSTREAM CG32100 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	19828254	2R_19828254_SNP [dm3] 2R_23940731_SNP [dm6]	T	A	1.471e^-4	0.378	UPSTREAM CG3735 INTRON Tal	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5550077	3L_5550077_SNP [dm3] 3L_5556977_SNP [dm6]	T	C	1.472e^-4	0.378	INTERGENIC
3R	8885417	3R_8885417_DEL [dm3] 3R_13059695_DEL [dm6]	GCGCAAAGCACGG...	G	1.477e^-4	0.378	INTRON sim
3R	17576467	3R_17576467_SNP [dm3] 3R_21750745_SNP [dm6]	G	C	1.479e^-4	0.378	INTRON CG31233	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14344890	X_14344890_SNP [dm3] X_14450857_SNP [dm6]	G	C	1.480e^-4	0.378	INTRON dpr8
X	14345011	X_14345011_DEL [dm3] X_14450978_DEL [dm6]	TTTTGCTCGCTATT...	T	1.480e^-4	0.378	INTRON dpr8
X	14345029	X_14345029_SNP [dm3] X_14450996_SNP [dm6]	G	T	1.480e^-4	0.378	INTRON dpr8
X	14345043	X_14345043_SNP [dm3] X_14451010_SNP [dm6]	T	C	1.480e^-4	0.378	INTRON dpr8
X	14345290	X_14345290_SNP [dm3] X_14451257_SNP [dm6]	C	G	1.480e^-4	0.378	INTRON dpr8
X	14345345	X_14345345_SNP [dm3] X_14451312_SNP [dm6]	T	A	1.480e^-4	0.378	INTRON dpr8
X	14345421	X_14345421_INS [dm3] X_14451388_INS [dm6]	C	CGAGCATCCAAGTATCT...	1.480e^-4	0.378	INTRON dpr8
X	14345452	X_14345452_SNP [dm3] X_14451419_SNP [dm6]	T	C	1.480e^-4	0.378	INTRON dpr8
X	14345491	X_14345491_SNP [dm3] X_14451458_SNP [dm6]	G	A	1.480e^-4	0.378	INTRON dpr8
X	14346777	X_14346777_SNP [dm3] X_14452744_SNP [dm6]	T	A	1.480e^-4	0.378	INTRON dpr8
2R	20609601	2R_20609601_DEL [dm3] 2R_24722078_DEL [dm6]	AGGGG	A	1.481e^-4	0.378	INTRON Mid1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20609608	2R_20609608_INS [dm3] 2R_24722085_INS [dm6]	C	CA	1.481e^-4	0.378	INTRON Mid1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20609941	2R_20609941_DEL [dm3] 2R_24722418_DEL [dm6]	CCCACTTCAACATTGTTTTC...	C	1.481e^-4	0.378	INTRON Mid1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	21337615	X_21337615_SNP [dm3] X_21466588_SNP [dm6]	C	G	1.490e^-4	0.38	DOWNSTREAM CR45507 INTERGENIC
2L	1868960	2L_1868960_SNP [dm3] 2L_1868960_SNP [dm6]	A	T	1.495e^-4	0.38	UPSTREAM CG7295 INTRON CG31663
3L	4194271	3L_4194271_SNP [dm3] 3L_4194271_SNP [dm6]	G	T	1.498e^-4	0.38	UTR_5_PRIME CG43367 UPSTREAM CG43367 DOWNSTREAM tipE	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	6214227	2L_6214227_SNP [dm3] 2L_6214227_SNP [dm6]	G	A	1.499e^-4	0.38	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	26347014	3R_26347014_SNP [dm3] 3R_30521292_SNP [dm6]	A	C	1.502e^-4	0.38	INTRON jdp	TF binding site mE1_TFBS_chinmo
2L	14255720	2L_14255720_SNP [dm3] 2L_14255720_SNP [dm6]	T	C	1.510e^-4	0.38	INTERGENIC
2L	12577460	2L_12577460_SNP [dm3] 2L_12577460_SNP [dm6]	T	G	1.511e^-4	0.38	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	20538166	X_20538166_INS [dm3] X_20667139_INS [dm6]	C	CGTTC	1.511e^-4	0.38	INTRON CG1835
3R	26393063	3R_26393063_SNP [dm3] 3R_30567341_SNP [dm6]	G	A	1.513e^-4	0.38	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26431712	3R_26431712_SNP [dm3] 3R_30605990_SNP [dm6]	A	T	1.514e^-4	0.38	UTR_3_PRIME PH4alphaNE3 UPSTREAM CG31016
X	10030796	X_10030796_SNP [dm3] X_10136763_SNP [dm6]	G	A	1.514e^-4	0.38	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14232416	2L_14232416_SNP [dm3] 2L_14232416_SNP [dm6]	A	C	1.515e^-4	0.38	INTRON Dyrk2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12648608	2L_12648608_SNP [dm3] 2L_12648608_SNP [dm6]	C	G	1.516e^-4	0.38	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	11053484	3L_11053484_SNP [dm3] 3L_11060384_SNP [dm6]	T	A	1.518e^-4	0.38	DOWNSTREAM CG7888 INTRON CG6321
2R	19774928	2R_19774928_SNP [dm3] 2R_23887405_SNP [dm6]	T	C	1.521e^-4	0.38	INTRON CG5597
3L	12411550	3L_12411550_SNP [dm3] 3L_12418450_SNP [dm6]	G	A	1.522e^-4	0.38	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
2L	2316781	2L_2316781_SNP [dm3] 2L_2316781_SNP [dm6]	T	A	1.530e^-4	0.381	INTRON CG9967 & 1 other
2L	2655592	2L_2655592_INS [dm3] 2L_2655592_INS [dm6]	ACT	TGCCAA	1.530e^-4	0.381	DOWNSTREAM Or23a INTRON Prosbeta4R2
3L	8387520	3L_8387520_SNP [dm3] 3L_8394420_SNP [dm6]	T	A	1.535e^-4	0.382	UPSTREAM Jon66Cii INTERGENIC
X	10202232	X_10202232_SNP [dm3] X_10308199_SNP [dm6]	A	G	1.544e^-4	0.383	SYNONYMOUS_CODING alpha-Man-I INTRON alpha-Man-I	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3R	15390436	3R_15390436_INS [dm3] 3R_19564714_INS [dm6]	G	GGTG	1.545e^-4	0.383	INTRON Dys
3R	4310875	3R_4310875_SNP [dm3] 3R_8485153_SNP [dm6]	G	A	1.553e^-4	0.385	INTERGENIC
2L	4594287	2L_4594287_SNP [dm3] 2L_4594287_SNP [dm6]	A	C	1.562e^-4	0.387	INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18833505	2R_18833505_SNP [dm3] 2R_22945982_SNP [dm6]	T	A	1.585e^-4	0.391	DOWNSTREAM CG42694 INTERGENIC
3R	14977246	3R_14977246_SNP [dm3] 3R_19151524_SNP [dm6]	G	C	1.594e^-4	0.391	NON_SYNONYMOUS_CODING CG5835
3R	14977287	3R_14977287_SNP [dm3] 3R_19151565_SNP [dm6]	G	A	1.594e^-4	0.391	NON_SYNONYMOUS_CODING CG5835
2L	6717426	2L_6717426_SNP [dm3] 2L_6717426_SNP [dm6]	A	G	1.598e^-4	0.391	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
3L	2827974	3L_2827974_SNP [dm3] 3L_2827974_SNP [dm6]	C	A	1.600e^-4	0.391	INTRON CG43444
3R	8368335	3R_8368335_SNP [dm3] 3R_12542613_SNP [dm6]	A	T	1.601e^-4	0.391	INTRON Octbeta3R
3R	8368355	3R_8368355_SNP [dm3] 3R_12542633_SNP [dm6]	C	T	1.601e^-4	0.391	INTRON Octbeta3R
2L	12639859	2L_12639859_SNP [dm3] 2L_12639859_SNP [dm6]	A	G	1.602e^-4	0.391	INTRON Ref2
3L	3935952	3L_3935952_SNP [dm3] 3L_3935952_SNP [dm6]	A	T	1.605e^-4	0.391	UPSTREAM Eip63F-1 DOWNSTREAM CG10866 EXON Eip63F-2
2L	4301077	2L_4301077_SNP [dm3] 2L_4301077_SNP [dm6]	T	A	1.608e^-4	0.391	INTRON tutl
2L	6405119	2L_6405119_SNP [dm3] 2L_6405119_SNP [dm6]	C	T	1.609e^-4	0.391	INTRON CG42368
2L	5773964	2L_5773964_SNP [dm3] 2L_5773964_SNP [dm6]	A	T	1.613e^-4	0.391	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5773968	2L_5773968_DEL [dm3] 2L_5773968_DEL [dm6]	TTA	T	1.613e^-4	0.391	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4734123	3L_4734123_SNP [dm3] 3L_4734123_SNP [dm6]	A	T	1.613e^-4	0.391	INTRON RhoGEF64C
2L	5377253	2L_5377253_SNP [dm3] 2L_5377253_SNP [dm6]	A	G	1.613e^-4	0.391	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5386333	3L_5386333_SNP [dm3] 3L_5393233_SNP [dm6]	A	G	1.618e^-4	0.391	INTERGENIC
3L	5386334	3L_5386334_SNP [dm3] 3L_5393234_SNP [dm6]	G	T	1.618e^-4	0.391	INTERGENIC
2R	3590595	2R_3590595_SNP [dm3] 2R_7703090_SNP [dm6]	A	G	1.622e^-4	0.392	UTR_3_PRIME CG30493 DOWNSTREAM CG34216
2L	6740707	2L_6740707_SNP [dm3] 2L_6740707_SNP [dm6]	T	G	1.624e^-4	0.392	UPSTREAM TTLL3A INTERGENIC
2R	7695525	2R_7695525_SNP [dm3] 2R_11808020_SNP [dm6]	G	A	1.628e^-4	0.392	NON_SYNONYMOUS_CODING ths
3L	9333438	3L_9333438_SNP [dm3] 3L_9340338_SNP [dm6]	T	C	1.633e^-4	0.393	UPSTREAM PGRP-LC INTRON PGRP-LC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14541020	2R_14541020_SNP [dm3] 2R_18653515_SNP [dm6]	T	C	1.635e^-4	0.393	UPSTREAM SP2637 INTRON SP2637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	11345064	3L_11345064_SNP [dm3] 3L_11351964_SNP [dm6]	T	G	1.643e^-4	0.394	INTERGENIC
3L	12466973	3L_12466973_SNP [dm3] 3L_12473873_SNP [dm6]	G	A	1.649e^-4	0.394	NON_SYNONYMOUS_CODING CG10616 DOWNSTREAM CG10663	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6530543	2L_6530543_SNP [dm3] 2L_6530543_SNP [dm6]	C	A	1.649e^-4	0.394	UPSTREAM eya INTRON eya	TF binding site BDTNP1_TFBS_twi
2R	16758434	2R_16758434_SNP [dm3] 2R_20870929_SNP [dm6]	C	T	1.650e^-4	0.394	DOWNSTREAM IM14 INTRON Ipk1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
X	20837567	X_20837567_SNP [dm3] X_20966540_SNP [dm6]	G	A	1.652e^-4	0.394	INTERGENIC
2L	14226733	2L_14226733_SNP [dm3] 2L_14226733_SNP [dm6]	G	A	1.656e^-4	0.394	INTRON Dyrk2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	8934639	3R_8934639_SNP [dm3] 3R_13108917_SNP [dm6]	A	T	1.662e^-4	0.394	INTRON timeout
2L	3110998	2L_3110998_SNP [dm3] 2L_3110998_SNP [dm6]	G	A	1.669e^-4	0.394	UTR_3_PRIME PpD6 INTRON toc
2L	14038414	2L_14038414_SNP [dm3] 2L_14038414_SNP [dm6]	T	A	1.672e^-4	0.394	UPSTREAM CR45284 INTERGENIC	TF binding site mE1_TFBS_cad
2L	14038416	2L_14038416_SNP [dm3] 2L_14038416_SNP [dm6]	G	A	1.672e^-4	0.394	UPSTREAM CR45284 INTERGENIC	TF binding site mE1_TFBS_cad
2L	8737632	2L_8737632_SNP [dm3] 2L_8737632_SNP [dm6]	A	C	1.672e^-4	0.394	INTRON raw
2L	6530562	2L_6530562_SNP [dm3] 2L_6530562_SNP [dm6]	G	A	1.672e^-4	0.394	UPSTREAM eya INTRON eya	TF binding site BDTNP1_TFBS_twi
2L	6450455	2L_6450455_SNP [dm3] 2L_6450455_SNP [dm6]	G	A	1.674e^-4	0.394	INTRON retm
3L	3075145	3L_3075145_SNP [dm3] 3L_3075145_SNP [dm6]	T	C	1.682e^-4	0.394	INTRON CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17177217	2R_17177217_SNP [dm3] 2R_21289712_SNP [dm6]	G	A	1.687e^-4	0.394	SYNONYMOUS_CODING CG10505
3R	26918487	3R_26918487_INS [dm3] 3R_31092765_INS [dm6]	G	GAATG	1.688e^-4	0.394	INTRON CG11317
2L	7514806	2L_7514806_SNP [dm3] 2L_7514806_SNP [dm6]	A	T	1.688e^-4	0.394	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	14946210	2R_14946210_SNP [dm3] 2R_19058705_SNP [dm6]	G	A	1.698e^-4	0.394	UPSTREAM CG15109 INTERGENIC
3L	12382600	3L_12382600_SNP [dm3] 3L_12389500_SNP [dm6]	T	C	1.703e^-4	0.394	INTRON Ncc69
2L	6419220	2L_6419220_SNP [dm3] 2L_6419220_SNP [dm6]	A	G	1.706e^-4	0.394	SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24431967	3R_24431967_SNP [dm3] 3R_28606245_SNP [dm6]	G	T	1.707e^-4	0.394	SYNONYMOUS_CODING CG9986 DOWNSTREAM Hrb98DE	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	25904255	3R_25904255_SNP [dm3] 3R_30078533_SNP [dm6]	G	C	1.713e^-4	0.394	INTRON sima
3L	6917533	3L_6917533_SNP [dm3] 3L_6924433_SNP [dm6]	G	A	1.719e^-4	0.394	INTERGENIC
3R	20049804	3R_20049804_SNP [dm3] 3R_24224082_SNP [dm6]	A	T	1.722e^-4	0.394	SYNONYMOUS_CODING Spps DOWNSTREAM cav	TF binding site mE1_TFBS_chinmo
2L	6450265	2L_6450265_SNP [dm3] 2L_6450265_SNP [dm6]	C	G	1.724e^-4	0.394	INTRON retm
2L	2365146	2L_2365146_SNP [dm3] 2L_2365146_SNP [dm6]	C	T	1.730e^-4	0.394	UTR_5_PRIME Rab5 UPSTREAM Axud1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	3095186	2L_3095186_SNP [dm3] 2L_3095186_SNP [dm6]	T	C	1.730e^-4	0.394	UPSTREAM toc INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_zfh1
3L	12949042	3L_12949042_SNP [dm3] 3L_12955942_SNP [dm6]	G	T	1.730e^-4	0.394	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11351217	2L_11351217_SNP [dm3] 2L_11351217_SNP [dm6]	A	C	1.731e^-4	0.394	INTERGENIC	regulatory region REDfly_CRMs
X	14791557	X_14791557_INS [dm3] X_14897524_INS [dm6]	C	CTTC	1.732e^-4	0.394	UPSTREAM CG9514 INTRON Flo2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4672544	X_4672544_SNP [dm3] X_4778511_SNP [dm6]	T	C	1.733e^-4	0.394	INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl
2L	11693613	2L_11693613_SNP [dm3] 2L_11693613_SNP [dm6]	C	G	1.735e^-4	0.394	INTERGENIC	TF binding site mE1_TFBS_inv
3L	12501940	3L_12501940_SNP [dm3] 3L_12508840_SNP [dm6]	T	C	1.737e^-4	0.394	SYNONYMOUS_CODING sti UPSTREAM CG10654	TF binding site mE1_TFBS_sens
2L	17603268	2L_17603268_SNP [dm3] 2L_17603268_SNP [dm6]	G	A	1.739e^-4	0.394	NON_SYNONYMOUS_CODING Sytalpha	TF binding site mE1_TFBS_bab1
3R	17091215	3R_17091215_SNP [dm3] 3R_21265493_SNP [dm6]	A	G	1.739e^-4	0.394	DOWNSTREAM Rab1 & 1 other INTERGENIC
2L	3945038	2L_3945038_SNP [dm3] 2L_3945038_SNP [dm6]	C	A	1.744e^-4	0.394	INTRON fred
3L	8802311	3L_8802311_SNP [dm3] 3L_8809211_SNP [dm6]	A	G	1.744e^-4	0.394	SYNONYMOUS_CODING CG13308 DOWNSTREAM CG32024
2L	20317865	2L_20317865_SNP [dm3] 2L_20317865_SNP [dm6]	A	G	1.745e^-4	0.394	UPSTREAM CR43606 INTRON spir
2R	7602358	2R_7602358_SNP [dm3] 2R_11714853_SNP [dm6]	T	A	1.756e^-4	0.394	INTRON pyr
2R	5883948	2R_5883948_DEL [dm3] 2R_9996443_DEL [dm6]	TGGTTGCTT	T	1.763e^-4	0.394	UTR_3_PRIME Pka-R2 DOWNSTREAM Pka-R2
X	14520920	X_14520920_SNP [dm3] X_14626887_SNP [dm6]	A	G	1.766e^-4	0.394	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9175101	2L_9175101_SNP [dm3] 2L_9175101_SNP [dm6]	T	A	1.772e^-4	0.394	INTRON tai
2L	19849994	2L_19849994_SNP [dm3] 2L_19849994_SNP [dm6]	A	T	1.780e^-4	0.394	UTR_5_PRIME sick INTRON sick	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2176881	3L_2176881_SNP [dm3] 3L_2176881_SNP [dm6]	T	G	1.781e^-4	0.394	INTERGENIC
2R	1435993	2R_1435993_SNP [dm3] 2R_5548488_SNP [dm6]	A	T	1.786e^-4	0.394	SYNONYMOUS_CODING CG30438
3L	2842020	3L_2842020_SNP [dm3] 3L_2842020_SNP [dm6]	C	T	1.787e^-4	0.394	INTRON CG43444
X	18431898	X_18431898_DEL [dm3] X_18537865_DEL [dm6]	GCGGACCCCG	G	1.789e^-4	0.394	INTRON Bx
2L	8370098	2L_8370098_SNP [dm3] 2L_8370098_SNP [dm6]	A	T	1.791e^-4	0.394	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
2R	3801239	2R_3801239_SNP [dm3] 2R_7913734_SNP [dm6]	T	G	1.796e^-4	0.394	INTRON CG30377
2R	17174670	2R_17174670_SNP [dm3] 2R_21287165_SNP [dm6]	G	T	1.804e^-4	0.394	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
2L	6146277	2L_6146277_SNP [dm3] 2L_6146277_SNP [dm6]	G	A	1.816e^-4	0.394	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	19745599	3R_19745599_SNP [dm3] 3R_23919877_SNP [dm6]	C	A	1.833e^-4	0.394	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12693242	3L_12693242_SNP [dm3] 3L_12700142_SNP [dm6]	A	G	1.837e^-4	0.394	INTRON mirr	TF binding site BDTNP1_TFBS_twi
3R	26347248	3R_26347248_SNP [dm3] 3R_30521526_SNP [dm6]	G	A	1.839e^-4	0.394	INTRON jdp
2L	6717398	2L_6717398_SNP [dm3] 2L_6717398_SNP [dm6]	T	C	1.841e^-4	0.394	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
2L	6717427	2L_6717427_SNP [dm3] 2L_6717427_SNP [dm6]	C	A	1.841e^-4	0.394	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
X	16334368	X_16334368_SNP [dm3] X_16440335_SNP [dm6]	C	T	1.846e^-4	0.394	SYNONYMOUS_CODING CG9947	TF binding site mE1_TFBS_sens
2R	16862788	2R_16862788_SNP [dm3] 2R_20975283_SNP [dm6]	T	G	1.847e^-4	0.394	UPSTREAM CG34115 INTERGENIC
3L	22964441	3L_22964441_SNP [dm3] 3L_22971341_SNP [dm6]	G	A	1.856e^-4	0.394	INTERGENIC
3L	7400507	3L_7400507_SNP [dm3] 3L_7407407_SNP [dm6]	T	A	1.859e^-4	0.394	DOWNSTREAM pncr015:3L INTERGENIC
2L	13233894	2L_13233894_SNP [dm3] 2L_13233894_SNP [dm6]	C	T	1.863e^-4	0.394	UTR_3_PRIME CG15479 DOWNSTREAM Prosalpha6T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15280305	3R_15280305_SNP [dm3] 3R_19454583_SNP [dm6]	T	C	1.867e^-4	0.394	INTRON CG31221
2L	22650310	2L_22650310_SNP [dm3] 2L_22757578_SNP [dm6]	A	G	1.869e^-4	0.394	INTERGENIC
3R	24882114	3R_24882114_SNP [dm3] 3R_29056392_SNP [dm6]	C	T	1.871e^-4	0.394	DOWNSTREAM CG11843 INTRON Sirt7
3R	23085846	3R_23085846_SNP [dm3] 3R_27260124_SNP [dm6]	G	A	1.876e^-4	0.394	SYNONYMOUS_CODING woc UPSTREAM woc EXON CR44049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8362561	2L_8362561_SNP [dm3] 2L_8362561_SNP [dm6]	C	G	1.879e^-4	0.394	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	14559026	3L_14559026_SNP [dm3] 3L_14565926_SNP [dm6]	G	T	1.881e^-4	0.394	INTERGENIC
3L	5798371	3L_5798371_SNP [dm3] 3L_5805271_SNP [dm6]	C	T	1.884e^-4	0.394	SYNONYMOUS_CODING CG42272 INTRON S6k	TF binding site mE1_TFBS_cad
3L	12451867	3L_12451867_SNP [dm3] 3L_12458767_SNP [dm6]	G	C	1.891e^-4	0.394	INTERGENIC
3R	2222238	3R_2222238_SNP [dm3] 3R_6396516_SNP [dm6]	A	T	1.897e^-4	0.394	INTRON Dmtn
X	14345640	X_14345640_SNP [dm3] X_14451607_SNP [dm6]	G	T	1.899e^-4	0.394	INTRON dpr8
3L	12409735	3L_12409735_SNP [dm3] 3L_12416635_SNP [dm6]	C	T	1.900e^-4	0.394	SYNONYMOUS_CODING ArfGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12409954	3L_12409954_SNP [dm3] 3L_12416854_SNP [dm6]	A	G	1.900e^-4	0.394	SYNONYMOUS_CODING ArfGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8234191	2L_8234191_SNP [dm3] 2L_8234191_SNP [dm6]	A	G	1.904e^-4	0.394	INTRON Pvr
2L	10957369	2L_10957369_SNP [dm3] 2L_10957369_SNP [dm6]	A	T	1.906e^-4	0.394	INTRON dpr2
3L	5446215	3L_5446215_SNP [dm3] 3L_5453115_SNP [dm6]	T	A	1.910e^-4	0.394	INTERGENIC
2R	15122028	2R_15122028_SNP [dm3] 2R_19234523_SNP [dm6]	C	T	1.912e^-4	0.394	INTRON cora
2L	6450439	2L_6450439_SNP [dm3] 2L_6450439_SNP [dm6]	A	G	1.913e^-4	0.394	INTRON retm
3L	12430583	3L_12430583_SNP [dm3] 3L_12437483_SNP [dm6]	A	G	1.914e^-4	0.394	INTERGENIC
2L	7468052	2L_7468052_SNP [dm3] 2L_7468052_SNP [dm6]	C	T	1.923e^-4	0.394	INTRON CG6055
3L	1406405	3L_1406405_SNP [dm3] 3L_1406405_SNP [dm6]	A	T	1.929e^-4	0.394	INTRON Ptp61F	TF binding site mE1_TFBS_cad
3L	2558954	3L_2558954_SNP [dm3] 3L_2558954_SNP [dm6]	A	T	1.937e^-4	0.394	INTRON msn
2R	7576848	2R_7576848_SNP [dm3] 2R_11689343_SNP [dm6]	G	A	1.938e^-4	0.394	SYNONYMOUS_CODING wal DOWNSTREAM Buffy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17601892	2L_17601892_DEL [dm3] 2L_17601892_DEL [dm6]	TTATTTTT	T	1.940e^-4	0.394	INTRON Sytalpha
3L	5072425	3L_5072425_SNP [dm3] 3L_5072425_SNP [dm6]	T	A	1.941e^-4	0.394	INTRON Con
3L	5072426	3L_5072426_SNP [dm3] 3L_5072426_SNP [dm6]	C	T	1.941e^-4	0.394	INTRON Con
3R	10381095	3R_10381095_SNP [dm3] 3R_14555373_SNP [dm6]	T	A	1.946e^-4	0.394	INTRON Pde6
3R	10381371	3R_10381371_SNP [dm3] 3R_14555649_SNP [dm6]	G	A	1.946e^-4	0.394	INTRON Pde6
3R	10384381	3R_10384381_SNP [dm3] 3R_14558659_SNP [dm6]	T	C	1.946e^-4	0.394	UPSTREAM Pde6 DOWNSTREAM CG14854 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	10384643	3R_10384643_SNP [dm3] 3R_14558921_SNP [dm6]	A	T	1.946e^-4	0.394	UPSTREAM Pde6 DOWNSTREAM CG14854 INTERGENIC
3R	10384817	3R_10384817_SNP [dm3] 3R_14559095_SNP [dm6]	T	A	1.946e^-4	0.394	UPSTREAM Pde6 DOWNSTREAM CG14854 INTERGENIC
3R	10387837	3R_10387837_SNP [dm3] 3R_14562115_SNP [dm6]	A	G	1.946e^-4	0.394	UPSTREAM CG14851 DOWNSTREAM CG14850 INTERGENIC
3R	10387844	3R_10387844_SNP [dm3] 3R_14562122_SNP [dm6]	A	T	1.946e^-4	0.394	UPSTREAM CG14851 DOWNSTREAM CG14850 INTERGENIC
3R	10387866	3R_10387866_SNP [dm3] 3R_14562144_SNP [dm6]	C	T	1.946e^-4	0.394	UPSTREAM CG14851 DOWNSTREAM CG14850 INTERGENIC
3R	10389131	3R_10389131_SNP [dm3] 3R_14563409_SNP [dm6]	G	A	1.946e^-4	0.394	DOWNSTREAM CG14851 & 1 other INTERGENIC
2R	20517888	2R_20517888_SNP [dm3] 2R_24630365_SNP [dm6]	G	A	1.946e^-4	0.394	UPSTREAM Cyp9c1 DOWNSTREAM CR43787 INTRON CG13594
3R	14367309	3R_14367309_SNP [dm3] 3R_18541587_SNP [dm6]	A	T	1.949e^-4	0.394	INTRON fru
3R	14773844	3R_14773844_SNP [dm3] 3R_18948122_SNP [dm6]	G	T	1.949e^-4	0.394	INTRON CG42613
3L	12404486	3L_12404486_SNP [dm3] 3L_12411386_SNP [dm6]	C	G	1.958e^-4	0.394	INTRON CG32103
3L	12404547	3L_12404547_SNP [dm3] 3L_12411447_SNP [dm6]	G	A	1.958e^-4	0.394	INTRON CG32103
3L	12404568	3L_12404568_SNP [dm3] 3L_12411468_SNP [dm6]	T	A	1.958e^-4	0.394	INTRON CG32103
3L	12405671	3L_12405671_SNP [dm3] 3L_12412571_SNP [dm6]	T	C	1.958e^-4	0.394	INTRON CG32103
3L	12406531	3L_12406531_SNP [dm3] 3L_12413431_SNP [dm6]	A	C	1.958e^-4	0.394	INTRON CG32103
3L	12409224	3L_12409224_SNP [dm3] 3L_12416124_SNP [dm6]	T	G	1.958e^-4	0.394	INTRON ArfGAP1	TF binding site mE1_TFBS_chinmo
3L	12409268	3L_12409268_SNP [dm3] 3L_12416168_SNP [dm6]	T	C	1.958e^-4	0.394	INTRON ArfGAP1	TF binding site mE1_TFBS_chinmo
3L	12410164	3L_12410164_SNP [dm3] 3L_12417064_SNP [dm6]	G	A	1.958e^-4	0.394	SYNONYMOUS_CODING ArfGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12410583	3L_12410583_SNP [dm3] 3L_12417483_SNP [dm6]	T	C	1.958e^-4	0.394	UTR_5_PRIME ArfGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	12413421	3L_12413421_SNP [dm3] 3L_12420321_SNP [dm6]	A	G	1.958e^-4	0.394	INTERGENIC
3L	12413618	3L_12413618_SNP [dm3] 3L_12420518_SNP [dm6]	T	C	1.958e^-4	0.394	INTERGENIC
3L	12414019	3L_12414019_SNP [dm3] 3L_12420919_SNP [dm6]	C	T	1.958e^-4	0.394	INTERGENIC
3L	12415332	3L_12415332_SNP [dm3] 3L_12422232_SNP [dm6]	A	C	1.958e^-4	0.394	DOWNSTREAM toe INTERGENIC
3L	12415424	3L_12415424_INS [dm3] 3L_12422324_INS [dm6]	A	TG	1.958e^-4	0.394	DOWNSTREAM toe INTERGENIC
3L	12416445	3L_12416445_SNP [dm3] 3L_12423345_SNP [dm6]	C	G	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12417294	3L_12417294_SNP [dm3] 3L_12424194_SNP [dm6]	A	T	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417314	3L_12417314_SNP [dm3] 3L_12424214_SNP [dm6]	A	T	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417319	3L_12417319_DEL [dm3] 3L_12424219_DEL [dm6]	ATT	A	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417323	3L_12417323_SNP [dm3] 3L_12424223_SNP [dm6]	G	A	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417324	3L_12417324_SNP [dm3] 3L_12424224_SNP [dm6]	G	A	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417326	3L_12417326_MNP [dm3] 3L_12424226_MNP [dm6]	ATATT	TGCAC	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417349	3L_12417349_SNP [dm3] 3L_12424249_SNP [dm6]	C	A	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417352	3L_12417352_SNP [dm3] 3L_12424252_SNP [dm6]	T	C	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417354	3L_12417354_SNP [dm3] 3L_12424254_SNP [dm6]	G	T	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417355	3L_12417355_SNP [dm3] 3L_12424255_SNP [dm6]	C	A	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417358	3L_12417358_SNP [dm3] 3L_12424258_SNP [dm6]	A	T	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417369	3L_12417369_SNP [dm3] 3L_12424269_SNP [dm6]	C	G	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417375	3L_12417375_SNP [dm3] 3L_12424275_SNP [dm6]	T	G	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417376	3L_12417376_INS [dm3] 3L_12424276_INS [dm6]	G	GAG	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417382	3L_12417382_INS [dm3] 3L_12424282_INS [dm6]	C	CCTAA	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417387	3L_12417387_INS [dm3] 3L_12424287_INS [dm6]	T	TCCTCGACATTTGG...	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417393	3L_12417393_INS [dm3] 3L_12424293_INS [dm6]	CA	TCTAAACCTAAT...	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417400	3L_12417400_SNP [dm3] 3L_12424300_SNP [dm6]	A	T	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417402	3L_12417402_SNP [dm3] 3L_12424302_SNP [dm6]	G	A	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417403	3L_12417403_SNP [dm3] 3L_12424303_SNP [dm6]	G	T	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417405	3L_12417405_SNP [dm3] 3L_12424305_SNP [dm6]	G	T	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417413	3L_12417413_SNP [dm3] 3L_12424313_SNP [dm6]	G	A	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417431	3L_12417431_SNP [dm3] 3L_12424331_SNP [dm6]	C	T	1.958e^-4	0.394	INTRON toe
3L	12417454	3L_12417454_SNP [dm3] 3L_12424354_SNP [dm6]	T	A	1.958e^-4	0.394	INTRON toe
3L	12417455	3L_12417455_SNP [dm3] 3L_12424355_SNP [dm6]	T	A	1.958e^-4	0.394	INTRON toe
3L	12417460	3L_12417460_SNP [dm3] 3L_12424360_SNP [dm6]	T	C	1.958e^-4	0.394	INTRON toe
3L	12417464	3L_12417464_SNP [dm3] 3L_12424364_SNP [dm6]	G	A	1.958e^-4	0.394	INTRON toe
3L	12417472	3L_12417472_SNP [dm3] 3L_12424372_SNP [dm6]	G	C	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad
3L	12417497	3L_12417497_SNP [dm3] 3L_12424397_SNP [dm6]	T	A	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad
3L	12417503	3L_12417503_SNP [dm3] 3L_12424403_SNP [dm6]	G	A	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad
3L	12417517	3L_12417517_SNP [dm3] 3L_12424417_SNP [dm6]	T	C	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad
3L	12417530	3L_12417530_SNP [dm3] 3L_12424430_SNP [dm6]	A	T	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad
3L	12417542	3L_12417542_SNP [dm3] 3L_12424442_SNP [dm6]	A	C	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad
3L	12417556	3L_12417556_SNP [dm3] 3L_12424456_SNP [dm6]	T	C	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad
3L	12417577	3L_12417577_DEL [dm3] 3L_12424477_DEL [dm6]	TTTGTATACCCATTTAGTCG...	T	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad
3L	12417844	3L_12417844_SNP [dm3] 3L_12424744_SNP [dm6]	T	C	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad
3L	12417846	3L_12417846_SNP [dm3] 3L_12424746_SNP [dm6]	C	A	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad
3L	12417879	3L_12417879_SNP [dm3] 3L_12424779_SNP [dm6]	C	A	1.958e^-4	0.394	INTRON toe	TF binding site mE1_TFBS_cad
2R	18833632	2R_18833632_SNP [dm3] 2R_22946109_SNP [dm6]	A	G	1.961e^-4	0.394	DOWNSTREAM CG42694 INTERGENIC
2R	9797351	2R_9797351_SNP [dm3] 2R_13909846_SNP [dm6]	C	G	1.965e^-4	0.394	INTRON shot
2L	5778347	2L_5778347_SNP [dm3] 2L_5778347_SNP [dm6]	G	A	1.967e^-4	0.394	INTRON CG9171	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4734124	3L_4734124_SNP [dm3] 3L_4734124_SNP [dm6]	T	C	1.969e^-4	0.394	INTRON RhoGEF64C
2L	14462267	2L_14462267_SNP [dm3] 2L_14462267_SNP [dm6]	T	C	1.970e^-4	0.394	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
X	18492885	X_18492885_SNP [dm3] X_18598852_SNP [dm6]	C	T	1.978e^-4	0.395	INTERGENIC
2R	3612070	2R_3612070_DEL [dm3] 2R_7724565_DEL [dm6]	TT	T	1.981e^-4	0.395	INTRON CG18812
3L	19942948	3L_19942948_SNP [dm3] 3L_19949848_SNP [dm6]	T	G	1.986e^-4	0.395	DOWNSTREAM CG32219 INTRON Ac76E	TF binding site mE1_TFBS_inv
3L	19942949	3L_19942949_SNP [dm3] 3L_19949849_SNP [dm6]	C	T	1.986e^-4	0.395	DOWNSTREAM CG32219 INTRON Ac76E	TF binding site mE1_TFBS_inv
2R	16994524	2R_16994524_SNP [dm3] 2R_21107019_SNP [dm6]	T	A	1.987e^-4	0.395	INTRON ktub
2L	12648556	2L_12648556_SNP [dm3] 2L_12648556_SNP [dm6]	G	T	1.988e^-4	0.395	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	17091206	3R_17091206_SNP [dm3] 3R_21265484_SNP [dm6]	G	A	2.005e^-4	0.398	DOWNSTREAM Rab1 & 1 other INTERGENIC
3R	26888441	3R_26888441_SNP [dm3] 3R_31062719_SNP [dm6]	A	G	2.011e^-4	0.398	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	6918049	3L_6918049_SNP [dm3] 3L_6924949_SNP [dm6]	G	A	2.014e^-4	0.398	INTERGENIC
2R	7569255	2R_7569255_INS [dm3] 2R_11681750_INS [dm6]	G	AAA	2.014e^-4	0.398	INTRON Buffy	TF binding site BDTNP1_TFBS_hb
2R	7572186	2R_7572186_SNP [dm3] 2R_11684681_SNP [dm6]	G	A	2.014e^-4	0.398	SYNONYMOUS_CODING CG13196 INTRON Buffy	TF binding site mE1_TFBS_cad
2R	20228318	2R_20228318_DEL [dm3] 2R_24340795_DEL [dm6]	AAATATACA	A	2.027e^-4	0.4	INTERGENIC
3L	10734951	3L_10734951_SNP [dm3] 3L_10741851_SNP [dm6]	T	A	2.034e^-4	0.401	INTERGENIC
2R	16862775	2R_16862775_SNP [dm3] 2R_20975270_SNP [dm6]	T	C	2.039e^-4	0.401	UPSTREAM CG34115 INTERGENIC
3L	5349867	3L_5349867_SNP [dm3] 3L_5356767_SNP [dm6]	C	G	2.042e^-4	0.401	UPSTREAM lama & 1 other DOWNSTREAM Klp64D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	8930122	3R_8930122_SNP [dm3] 3R_13104400_SNP [dm6]	A	C	2.045e^-4	0.401	INTRON timeout
2R	12870447	2R_12870447_SNP [dm3] 2R_16982942_SNP [dm6]	G	T	2.046e^-4	0.401	INTRON Cbp53E
2L	5797038	2L_5797038_SNP [dm3] 2L_5797038_SNP [dm6]	A	G	2.048e^-4	0.401	INTRON CG9171
3R	26347354	3R_26347354_SNP [dm3] 3R_30521632_SNP [dm6]	A	T	2.051e^-4	0.401	INTRON jdp
X	9523398	X_9523398_SNP [dm3] X_9629365_SNP [dm6]	A	G	2.053e^-4	0.401	INTRON l_1_G0232
X	9523419	X_9523419_SNP [dm3] X_9629386_SNP [dm6]	A	G	2.053e^-4	0.401	INTRON l_1_G0232
3L	19072143	3L_19072143_SNP [dm3] 3L_19079043_SNP [dm6]	C	A	2.054e^-4	0.401	INTRON Mkp3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14552025	3R_14552025_DEL [dm3] 3R_18726303_DEL [dm6]	TAT	T	2.056e^-4	0.401	INTRON Cha & 1 other
3R	26603710	3R_26603710_SNP [dm3] 3R_30777988_SNP [dm6]	G	A	2.057e^-4	0.401	INTRON zfh1	TF binding site mE1_TFBS_chinmo
3R	10386813	3R_10386813_SNP [dm3] 3R_14561091_SNP [dm6]	T	C	2.060e^-4	0.401	NON_SYNONYMOUS_CODING CG14850
2L	6717420	2L_6717420_SNP [dm3] 2L_6717420_SNP [dm6]	C	T	2.062e^-4	0.401	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
2L	7706304	2L_7706304_SNP [dm3] 2L_7706304_SNP [dm6]	T	C	2.063e^-4	0.401	SYNONYMOUS_CODING Tep3	TF binding site mE1_TFBS_inv
3L	8695030	3L_8695030_SNP [dm3] 3L_8701930_SNP [dm6]	C	T	2.069e^-4	0.402	INTERGENIC
2L	10957367	2L_10957367_SNP [dm3] 2L_10957367_SNP [dm6]	A	C	2.082e^-4	0.403	INTRON dpr2
2L	10933647	2L_10933647_DEL [dm3] 2L_10933647_DEL [dm6]	TTG	A	2.082e^-4	0.403	INTRON dpr2
3L	16876291	3L_16876291_SNP [dm3] 3L_16883191_SNP [dm6]	C	A	2.084e^-4	0.403	INTRON Lmpt
3R	11128765	3R_11128765_SNP [dm3] 3R_15303043_SNP [dm6]	T	C	2.086e^-4	0.403	INTRON Tm1
2L	19855337	2L_19855337_DEL [dm3] 2L_19855337_DEL [dm6]	AT	A	2.087e^-4	0.403	INTRON sick
2L	6446367	2L_6446367_SNP [dm3] 2L_6446367_SNP [dm6]	C	T	2.089e^-4	0.403	SYNONYMOUS_CODING CG9527	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3491896	2L_3491896_DEL [dm3] 2L_3491896_DEL [dm6]	AC	A	2.090e^-4	0.403	UPSTREAM CG15414 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6454305	2L_6454305_SNP [dm3] 2L_6454305_SNP [dm6]	G	A	2.094e^-4	0.403	INTRON retm
2L	15300548	2L_15300548_SNP [dm3] 2L_15300548_SNP [dm6]	G	A	2.094e^-4	0.403	INTERGENIC
2L	4361591	2L_4361591_SNP [dm3] 2L_4361591_SNP [dm6]	C	T	2.095e^-4	0.403	UPSTREAM Traf4 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24217548	3R_24217548_SNP [dm3] 3R_28391826_SNP [dm6]	T	A	2.098e^-4	0.403	INTERGENIC
3R	26160212	3R_26160212_SNP [dm3] 3R_30334490_SNP [dm6]	A	G	2.109e^-4	0.404	INTRON hdc
2R	16761663	2R_16761663_SNP [dm3] 2R_20874158_SNP [dm6]	G	T	2.109e^-4	0.404	UPSTREAM Ipk1 INTRON Ipk1	TF binding site mE1_TFBS_cad
2L	6203545	2L_6203545_SNP [dm3] 2L_6203545_SNP [dm6]	G	C	2.119e^-4	0.405	SYNONYMOUS_CODING CG34380	TF binding site mE1_TFBS_sens
3R	2827918	3R_2827918_SNP [dm3] 3R_7002196_SNP [dm6]	G	T	2.123e^-4	0.405	INTERGENIC	TF binding site mE1_TFBS_cad
3L	3146425	3L_3146425_SNP [dm3] 3L_3146425_SNP [dm6]	C	A	2.126e^-4	0.405	SYNONYMOUS_CODING CG12082	TF binding site mE1_TFBS_chinmo
3R	17091218	3R_17091218_SNP [dm3] 3R_21265496_SNP [dm6]	T	G	2.128e^-4	0.405	DOWNSTREAM Rab1 & 1 other INTERGENIC
2L	6450174	2L_6450174_SNP [dm3] 2L_6450174_SNP [dm6]	T	G	2.129e^-4	0.405	INTRON retm
2L	6450199	2L_6450199_SNP [dm3] 2L_6450199_SNP [dm6]	T	A	2.129e^-4	0.405	INTRON retm
2L	6461303	2L_6461303_SNP [dm3] 2L_6461303_SNP [dm6]	G	C	2.129e^-4	0.405	INTRON CG16947
3L	14403189	3L_14403189_SNP [dm3] 3L_14410089_SNP [dm6]	T	A	2.131e^-4	0.405	UPSTREAM CG3919 & 1 other DOWNSTREAM CR45233 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	14404654	3L_14404654_SNP [dm3] 3L_14411554_SNP [dm6]	T	C	2.131e^-4	0.405	NON_SYNONYMOUS_CODING CG3919 UPSTREAM CR45233	TF binding site mE1_TFBS_HSA
2R	6057226	2R_6057226_SNP [dm3] 2R_10169721_SNP [dm6]	G	A	2.135e^-4	0.405	INTRON KCNQ
3R	14570123	3R_14570123_SNP [dm3] 3R_18744401_SNP [dm6]	A	C	2.140e^-4	0.405	SYNONYMOUS_CODING CG7718 UPSTREAM Mekk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6348746	2L_6348746_INS [dm3] 2L_6348746_INS [dm6]	C	ATAGAGGCTATCG...	2.140e^-4	0.405	UPSTREAM CG9497 DOWNSTREAM CG9498 INTERGENIC
2R	20474020	2R_20474020_SNP [dm3] 2R_24586497_SNP [dm6]	T	A	2.147e^-4	0.406	INTRON pio
3R	18768049	3R_18768049_SNP [dm3] 3R_22942327_SNP [dm6]	G	C	2.148e^-4	0.406	INTRON klg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11065758	3L_11065758_SNP [dm3] 3L_11072658_SNP [dm6]	A	G	2.163e^-4	0.408	NON_SYNONYMOUS_CODING Mocs1 UTR_3_PRIME Mocs1 DOWNSTREAM l_3_01239	TF binding site mE1_TFBS_sens
3L	7609894	3L_7609894_INS [dm3] 3L_7616794_INS [dm6]	T	TTTAAATAATTAT...	2.166e^-4	0.408	INTRON CG33275
2L	6622599	2L_6622599_SNP [dm3] 2L_6622599_SNP [dm6]	A	G	2.168e^-4	0.408	UPSTREAM CG11320 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	1717218	3R_1717218_SNP [dm3] 3R_5891496_SNP [dm6]	T	G	2.171e^-4	0.408	INTRON CG34113	TF binding site mE1_TFBS_cad
3R	19447315	3R_19447315_SNP [dm3] 3R_23621593_SNP [dm6]	T	A	2.175e^-4	0.408	INTRON CG31145
3R	10381262	3R_10381262_SNP [dm3] 3R_14555540_SNP [dm6]	G	T	2.176e^-4	0.408	INTRON Pde6
3L	5072545	3L_5072545_SNP [dm3] 3L_5072545_SNP [dm6]	A	T	2.177e^-4	0.408	INTRON Con
3L	11533885	3L_11533885_SNP [dm3] 3L_11540785_SNP [dm6]	G	T	2.182e^-4	0.408	INTRON Mob2	TF binding site mE1_TFBS_inv
2L	20336415	2L_20336415_SNP [dm3] 2L_20336415_SNP [dm6]	C	G	2.187e^-4	0.408	INTRON spir
3L	20844615	3L_20844615_SNP [dm3] 3L_20851515_SNP [dm6]	G	T	2.189e^-4	0.408	INTRON CG32432
2L	2225726	2L_2225726_SNP [dm3] 2L_2225726_SNP [dm6]	G	A	2.190e^-4	0.408	UTR_3_PRIME CG15387 UPSTREAM rti DOWNSTREAM papi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	3890106	2R_3890106_SNP [dm3] 2R_8002601_SNP [dm6]	T	C	2.190e^-4	0.408	UPSTREAM CG11191 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11981073	2R_11981073_SNP [dm3] 2R_16093568_SNP [dm6]	A	C	2.194e^-4	0.408	INTRON Dg	TF binding site BDTNP1_TFBS_dl
X	4672194	X_4672194_SNP [dm3] X_4778161_SNP [dm6]	A	T	2.194e^-4	0.408	UPSTREAM CG2871 INTERGENIC
3R	19447220	3R_19447220_SNP [dm3] 3R_23621498_SNP [dm6]	G	A	2.198e^-4	0.408	INTRON CG31145

By genomic position
Variant impact
Gene name

Microbiota_OTU053 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results