DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.909e^-18)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

25931 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	10078242	2L_10078242_SNP [dm3] 2L_10078242_SNP [dm6]	A	G	0	0	INTRON CG44153
2L	10470277	2L_10470277_SNP [dm3] 2L_10470277_SNP [dm6]	C	G	0	0	INTRON RluA-1
2L	12263056	2L_12263056_SNP [dm3] 2L_12263056_SNP [dm6]	A	G	0	0	INTRON aret
2L	12406299	2L_12406299_SNP [dm3] 2L_12406299_SNP [dm6]	A	T	0	0	DOWNSTREAM vir-1 INTRON vir-1
2L	14012487	2L_14012487_SNP [dm3] 2L_14012487_SNP [dm6]	G	A	0	0	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16001993	2L_16001993_SNP [dm3] 2L_16001993_SNP [dm6]	T	C	0	0	DOWNSTREAM CG34167 INTRON beat-Ic EXON CR43825
2L	16015698	2L_16015698_SNP [dm3] 2L_16015698_SNP [dm6]	T	A	0	0	INTRON beat-Ic
2L	16016955	2L_16016955_SNP [dm3] 2L_16016955_SNP [dm6]	G	T	0	0	INTRON beat-Ic
2L	16017182	2L_16017182_SNP [dm3] 2L_16017182_SNP [dm6]	A	C	0	0	INTRON beat-Ic
2L	16018086	2L_16018086_SNP [dm3] 2L_16018086_SNP [dm6]	G	A	0	0	INTRON beat-Ic
2L	16021452	2L_16021452_SNP [dm3] 2L_16021452_SNP [dm6]	T	A	0	0	INTRON beat-Ic
2L	16021560	2L_16021560_SNP [dm3] 2L_16021560_SNP [dm6]	A	G	0	0	INTRON beat-Ic
2L	16021765	2L_16021765_SNP [dm3] 2L_16021765_SNP [dm6]	C	T	0	0	INTRON beat-Ic
2L	16022843	2L_16022843_SNP [dm3] 2L_16022843_SNP [dm6]	G	T	0	0	INTRON beat-Ic
2L	16023050	2L_16023050_SNP [dm3] 2L_16023050_SNP [dm6]	C	T	0	0	INTRON beat-Ic
2L	16023332	2L_16023332_SNP [dm3] 2L_16023332_SNP [dm6]	G	C	0	0	INTRON beat-Ic
2L	16023371	2L_16023371_SNP [dm3] 2L_16023371_SNP [dm6]	G	A	0	0	INTRON beat-Ic
2L	16023450	2L_16023450_SNP [dm3] 2L_16023450_SNP [dm6]	G	A	0	0	INTRON beat-Ic
2L	16027330	2L_16027330_SNP [dm3] 2L_16027330_SNP [dm6]	C	T	0	0	INTRON beat-Ic
2L	18138528	2L_18138528_SNP [dm3] 2L_18138528_SNP [dm6]	A	T	0	0	UPSTREAM kel DOWNSTREAM Socs36E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	20244734	2L_20244734_SNP [dm3] 2L_20244734_SNP [dm6]	A	G	0	0	INTERGENIC
2L	20265321	2L_20265321_SNP [dm3] 2L_20265321_SNP [dm6]	C	T	0	0	UPSTREAM CG17570 INTERGENIC
2L	20266267	2L_20266267_INS [dm3] 2L_20266267_INS [dm6]	T	TCA	0	0	INTERGENIC
2L	20602810	2L_20602810_SNP [dm3] 2L_20602810_SNP [dm6]	A	C	0	0	DOWNSTREAM CG31677 INTRON CR44909
2L	20611995	2L_20611995_DEL [dm3] 2L_20611995_DEL [dm6]	ATATATATATA...	A	0	0	INTRON CR44909
2L	20890441	2L_20890441_SNP [dm3] 2L_20890441_SNP [dm6]	C	T	0	0	UPSTREAM sky INTRON sky & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	21056327	2L_21056327_SNP [dm3] 2L_21056327_SNP [dm6]	A	G	0	0	NON_SYNONYMOUS_CODING Itgbetanu
2L	8332477	2L_8332477_SNP [dm3] 2L_8332477_SNP [dm6]	C	T	0	0	SYNONYMOUS_CODING CG14275
2L	8746438	2L_8746438_SNP [dm3] 2L_8746438_SNP [dm6]	T	A	0	0	INTERGENIC
2L	8746486	2L_8746486_SNP [dm3] 2L_8746486_SNP [dm6]	A	T	0	0	INTERGENIC
2L	8746489	2L_8746489_SNP [dm3] 2L_8746489_SNP [dm6]	G	T	0	0	INTERGENIC
2L	9186538	2L_9186538_SNP [dm3] 2L_9186538_SNP [dm6]	C	T	0	0	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9199928	2L_9199928_SNP [dm3] 2L_9199928_SNP [dm6]	T	G	0	0	INTRON tai
2L	9225132	2L_9225132_SNP [dm3] 2L_9225132_SNP [dm6]	C	T	0	0	INTRON tai	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	9453519	2L_9453519_INS [dm3] 2L_9453519_INS [dm6]	T	TT	0	0	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	9453521	2L_9453521_SNP [dm3] 2L_9453521_SNP [dm6]	T	G	0	0	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	9934888	2L_9934888_SNP [dm3] 2L_9934888_SNP [dm6]	T	C	0	0	UTR_3_PRIME CG31712
2L	9934895	2L_9934895_SNP [dm3] 2L_9934895_SNP [dm6]	T	C	0	0	UTR_3_PRIME CG31712
2R	10578770	2R_10578770_SNP [dm3] 2R_14691265_SNP [dm6]	C	G	0	0	INTRON mspo
2R	10589715	2R_10589715_SNP [dm3] 2R_14702210_SNP [dm6]	G	A	0	0	INTRON mspo
2R	10914320	2R_10914320_SNP [dm3] 2R_15026815_SNP [dm6]	G	A	0	0	INTRON hbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12545689	2R_12545689_SNP [dm3] 2R_16658184_SNP [dm6]	A	G	0	0	INTRON Picot
2R	12546110	2R_12546110_SNP [dm3] 2R_16658605_SNP [dm6]	G	T	0	0	INTRON Picot
2R	12546217	2R_12546217_SNP [dm3] 2R_16658712_SNP [dm6]	T	G	0	0	INTRON Picot
2R	12547479	2R_12547479_SNP [dm3] 2R_16659974_SNP [dm6]	T	G	0	0	UPSTREAM Picot INTRON Picot
2R	13618071	2R_13618071_SNP [dm3] 2R_17730566_SNP [dm6]	G	T	0	0	INTRON CG4984 & 1 other
2R	14730490	2R_14730490_SNP [dm3] 2R_18842985_SNP [dm6]	T	G	0	0	SYNONYMOUS_CODING CG15099	TF binding site mE1_TFBS_cad
2R	14962665	2R_14962665_SNP [dm3] 2R_19075160_SNP [dm6]	C	A	0	0	INTRON 5-HT1A
2R	14962666	2R_14962666_SNP [dm3] 2R_19075161_SNP [dm6]	C	A	0	0	INTRON 5-HT1A
2R	15117861	2R_15117861_SNP [dm3] 2R_19230356_SNP [dm6]	A	T	0	0	INTRON cora	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	15294069	2R_15294069_SNP [dm3] 2R_19406564_SNP [dm6]	A	T	0	0	DOWNSTREAM hts INTRON hts
2R	16367296	2R_16367296_SNP [dm3] 2R_20479791_SNP [dm6]	A	G	0	0	DOWNSTREAM CG12484 INTERGENIC
2R	16377608	2R_16377608_SNP [dm3] 2R_20490103_SNP [dm6]	T	G	0	0	DOWNSTREAM CR44643 INTERGENIC
2R	16609987	2R_16609987_SNP [dm3] 2R_20722482_SNP [dm6]	C	T	0	0	UPSTREAM CR44660 INTRON dpr
2R	16867487	2R_16867487_SNP [dm3] 2R_20979982_SNP [dm6]	T	C	0	0	INTRON CG9313
2R	16942754	2R_16942754_SNP [dm3] 2R_21055249_SNP [dm6]	A	C	0	0	INTRON shg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16944039	2R_16944039_SNP [dm3] 2R_21056534_SNP [dm6]	C	A	0	0	UTR_5_PRIME shg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
2R	16951437	2R_16951437_SNP [dm3] 2R_21063932_SNP [dm6]	T	G	0	0	NON_SYNONYMOUS_CODING Cht12 DOWNSTREAM Cht8
2R	16952513	2R_16952513_SNP [dm3] 2R_21065008_SNP [dm6]	T	G	0	0	UPSTREAM Cht12 DOWNSTREAM Cht4 INTERGENIC
2R	16952571	2R_16952571_SNP [dm3] 2R_21065066_SNP [dm6]	A	G	0	0	UPSTREAM Cht12 DOWNSTREAM Cht4 INTERGENIC
2R	16952573	2R_16952573_SNP [dm3] 2R_21065068_SNP [dm6]	A	G	0	0	UPSTREAM Cht12 DOWNSTREAM Cht4 INTERGENIC
2R	16952586	2R_16952586_SNP [dm3] 2R_21065081_SNP [dm6]	C	A	0	0	UPSTREAM Cht12 DOWNSTREAM Cht4 INTERGENIC
2R	16953922	2R_16953922_SNP [dm3] 2R_21066417_SNP [dm6]	T	C	0	0	NON_SYNONYMOUS_CODING Cht4 SPLICE_SITE_REGION Cht4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16955172	2R_16955172_SNP [dm3] 2R_21067667_SNP [dm6]	T	G	0	0	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
2R	16955201	2R_16955201_DEL [dm3] 2R_21067696_DEL [dm6]	TGAAATACAT	T	0	0	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
2R	16955227	2R_16955227_SNP [dm3] 2R_21067722_SNP [dm6]	C	A	0	0	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
2R	16955244	2R_16955244_SNP [dm3] 2R_21067739_SNP [dm6]	A	T	0	0	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
2R	16955273	2R_16955273_SNP [dm3] 2R_21067768_SNP [dm6]	C	T	0	0	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
2R	17125021	2R_17125021_SNP [dm3] 2R_21237516_SNP [dm6]	A	C	0	0	INTRON ASPP
2R	17163596	2R_17163596_SNP [dm3] 2R_21276091_SNP [dm6]	T	A	0	0	INTRON Rgk3
2R	20180585	2R_20180585_SNP [dm3] 2R_24293062_SNP [dm6]	C	T	0	0	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2728758	2R_2728758_SNP [dm3] 2R_6841253_SNP [dm6]	G	T	0	0	UPSTREAM CR44166 INTERGENIC
2R	2944841	2R_2944841_SNP [dm3] 2R_7057336_SNP [dm6]	G	A	0	0	SYNONYMOUS_CODING Tsp42Ep DOWNSTREAM Tsp42Eo & 1 other	TF binding site mE1_TFBS_chinmo
2R	2944931	2R_2944931_SNP [dm3] 2R_7057426_SNP [dm6]	C	A	0	0	DOWNSTREAM Tsp42Eo & 1 other INTRON Tsp42Ep	TF binding site mE1_TFBS_chinmo
2R	2953739	2R_2953739_SNP [dm3] 2R_7066234_SNP [dm6]	C	T	0	0	DOWNSTREAM Tsp42Er INTERGENIC
2R	2953768	2R_2953768_SNP [dm3] 2R_7066263_SNP [dm6]	G	A	0	0	DOWNSTREAM Tsp42Er INTERGENIC
2R	2954708	2R_2954708_SNP [dm3] 2R_7067203_SNP [dm6]	T	A	0	0	INTERGENIC	TF binding site mE1_TFBS_cad
2R	2961259	2R_2961259_SNP [dm3] 2R_7073754_SNP [dm6]	G	A	0	0	SYNONYMOUS_CODING CG12831
2R	2963151	2R_2963151_SNP [dm3] 2R_7075646_SNP [dm6]	C	T	0	0	INTERGENIC
2R	2968730	2R_2968730_SNP [dm3] 2R_7081225_SNP [dm6]	A	T	0	0	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	2987229	2R_2987229_SNP [dm3] 2R_7099724_SNP [dm6]	A	G	0	0	INTRON esn
2R	2987234	2R_2987234_SNP [dm3] 2R_7099729_SNP [dm6]	G	A	0	0	INTRON esn
2R	2995720	2R_2995720_SNP [dm3] 2R_7108215_SNP [dm6]	C	T	0	0	INTRON esn
2R	3007692	2R_3007692_SNP [dm3] 2R_7120187_SNP [dm6]	A	C	0	0	INTRON esn
2R	3081015	2R_3081015_SNP [dm3] 2R_7193510_SNP [dm6]	A	T	0	0	NON_SYNONYMOUS_CODING pk INTRON pk	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5408498	2R_5408498_SNP [dm3] 2R_9520993_SNP [dm6]	T	C	0	0	INTRON brp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6073621	2R_6073621_SNP [dm3] 2R_10186116_SNP [dm6]	T	C	0	0	INTRON KCNQ
2R	6073703	2R_6073703_SNP [dm3] 2R_10186198_SNP [dm6]	A	T	0	0	INTRON KCNQ
3L	10423569	3L_10423569_SNP [dm3] 3L_10430469_SNP [dm6]	G	C	0	0	SYNONYMOUS_CODING Ir67b
3L	11898260	3L_11898260_SNP [dm3] 3L_11905160_SNP [dm6]	A	G	0	0	INTRON CG44837
3L	12950264	3L_12950264_SNP [dm3] 3L_12957164_SNP [dm6]	G	C	0	0	INTERGENIC
3L	12950269	3L_12950269_SNP [dm3] 3L_12957169_SNP [dm6]	A	T	0	0	INTERGENIC
3L	14074673	3L_14074673_SNP [dm3] 3L_14081573_SNP [dm6]	T	G	0	0	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1733901	3L_1733901_SNP [dm3] 3L_1733901_SNP [dm6]	G	A	0	0	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17559710	3L_17559710_DEL [dm3] 3L_17566610_DEL [dm6]	CAC	C	0	0	UPSTREAM snoRNA:Me28S-A576 INTRON Eip74EF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	19991045	3L_19991045_SNP [dm3] 3L_19997945_SNP [dm6]	T	C	0	0	UTR_3_PRIME CG7433 DOWNSTREAM CG7433 & 1 other
3L	2514490	3L_2514490_SNP [dm3] 3L_2514490_SNP [dm6]	T	A	0	0	INTRON Spn	TF binding site mE1_TFBS_sbb
3L	4944798	3L_4944798_SNP [dm3] 3L_4944798_SNP [dm6]	G	A	0	0	INTRON Con
3L	4944808	3L_4944808_SNP [dm3] 3L_4944808_SNP [dm6]	A	G	0	0	INTRON Con
3L	6093045	3L_6093045_SNP [dm3] 3L_6099945_SNP [dm6]	C	A	0	0	INTRON Ets65A
3R	12667475	3R_12667475_SNP [dm3] 3R_16841753_SNP [dm6]	A	T	0	0	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	13869055	3R_13869055_SNP [dm3] 3R_18043333_SNP [dm6]	C	A	0	0	INTERGENIC
3R	14374440	3R_14374440_SNP [dm3] 3R_18548718_SNP [dm6]	A	G	0	0	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14486521	3R_14486521_SNP [dm3] 3R_18660799_SNP [dm6]	C	T	0	0	SYNONYMOUS_CODING CstF-64 DOWNSTREAM Cpsf73	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	14486962	3R_14486962_SNP [dm3] 3R_18661240_SNP [dm6]	G	A	0	0	SYNONYMOUS_CODING Cpsf73 DOWNSTREAM CstF-64	TF binding site mE1_TFBS_cad
3R	14487037	3R_14487037_SNP [dm3] 3R_18661315_SNP [dm6]	G	A	0	0	SYNONYMOUS_CODING Cpsf73 DOWNSTREAM CstF-64	TF binding site mE1_TFBS_cad
3R	14537372	3R_14537372_SNP [dm3] 3R_18711650_SNP [dm6]	T	C	0	0	INTRON VAChT & 1 other
3R	15622397	3R_15622397_SNP [dm3] 3R_19796675_SNP [dm6]	G	T	0	0	SYNONYMOUS_CODING bnl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
3R	15623291	3R_15623291_SNP [dm3] 3R_19797569_SNP [dm6]	T	C	0	0	INTRON bnl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	15634995	3R_15634995_SNP [dm3] 3R_19809273_SNP [dm6]	C	A	0	0	INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18116781	3R_18116781_DEL [dm3] 3R_22291059_DEL [dm6]	ACGACGTCGA	A	0	0	INTRON SKIP
3R	18117587	3R_18117587_INS [dm3] 3R_22291865_INS [dm6]	A	AGGAGCA	0	0	INTRON SKIP
3R	19390883	3R_19390883_SNP [dm3] 3R_23565161_SNP [dm6]	A	C	0	0	INTRON beat-IV
3R	19390911	3R_19390911_DEL [dm3] 3R_23565189_DEL [dm6]	CA	T	0	0	INTRON beat-IV
3R	19390974	3R_19390974_SNP [dm3] 3R_23565252_SNP [dm6]	C	T	0	0	INTRON beat-IV
3R	19449620	3R_19449620_SNP [dm3] 3R_23623898_SNP [dm6]	T	C	0	0	INTRON CG31145	TF binding site BDTNP1_TFBS_sna
3R	19857565	3R_19857565_SNP [dm3] 3R_24031843_SNP [dm6]	T	A	0	0	UPSTREAM Ime4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	19857678	3R_19857678_SNP [dm3] 3R_24031956_SNP [dm6]	C	T	0	0	UPSTREAM Ime4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22581124	3R_22581124_INS [dm3] 3R_26755402_INS [dm6]	A	AAAGCA	0	0	INTERGENIC
3R	22581127	3R_22581127_SNP [dm3] 3R_26755405_SNP [dm6]	T	C	0	0	INTERGENIC
3R	22628288	3R_22628288_SNP [dm3] 3R_26802566_SNP [dm6]	C	T	0	0	INTRON Tl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23806158	3R_23806158_SNP [dm3] 3R_27980436_SNP [dm6]	T	C	0	0	INTRON betaTub97EF
3R	24278054	3R_24278054_SNP [dm3] 3R_28452332_SNP [dm6]	G	A	0	0	INTRON beat-VI	TF binding site mE1_TFBS_chinmo
3R	3763874	3R_3763874_SNP [dm3] 3R_7938152_SNP [dm6]	G	A	0	0	INTRON dsx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3787739	3R_3787739_SNP [dm3] 3R_7962017_SNP [dm6]	C	A	0	0	INTRON dsx
3R	3793726	3R_3793726_SNP [dm3] 3R_7968004_SNP [dm6]	T	C	0	0	UPSTREAM dsx INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	3800374	3R_3800374_SNP [dm3] 3R_7974652_SNP [dm6]	A	G	0	0	SYNONYMOUS_CODING CD98hc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	3801214	3R_3801214_SNP [dm3] 3R_7975492_SNP [dm6]	C	T	0	0	NON_SYNONYMOUS_CODING CD98hc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	3863628	3R_3863628_SNP [dm3] 3R_8037906_SNP [dm6]	C	G	0	0	UPSTREAM CR44936 INTERGENIC
3R	9835545	3R_9835545_SNP [dm3] 3R_14009823_SNP [dm6]	A	T	0	0	INTRON rdx
X	20364652	X_20364652_SNP [dm3] X_20493625_SNP [dm6]	C	T	0	0	INTRON RhoGAP19D
X	20364902	X_20364902_INS [dm3] X_20493875_INS [dm6]	T	TTAGGTCAATT...	0	0	INTRON RhoGAP19D
X	20364947	X_20364947_SNP [dm3] X_20493920_SNP [dm6]	G	T	0	0	INTRON RhoGAP19D
X	20365168	X_20365168_SNP [dm3] X_20494141_SNP [dm6]	T	C	0	0	INTRON RhoGAP19D
X	20707688	X_20707688_SNP [dm3] X_20836661_SNP [dm6]	A	G	0	0	INTRON shakB
X	4870450	X_4870450_INS [dm3] X_4976417_INS [dm6]	G	GACGTGAATGTATCAG...	0	0	INTRON CR44833
X	502761	X_502761_INS [dm3] X_608728_INS [dm6]	G	GG	0	0	INTRON CG13366
X	5977637	X_5977637_SNP [dm3] X_6083604_SNP [dm6]	G	A	0	0	UTR_3_PRIME raptor & 1 other
3L	15367504	3L_15367504_SNP [dm3] 3L_15374404_SNP [dm6]	A	T	1.249e^-49	1.659e^-45	INTERGENIC
3L	15367623	3L_15367623_SNP [dm3] 3L_15374523_SNP [dm6]	G	A	1.249e^-49	1.659e^-45	INTERGENIC
3R	18685982	3R_18685982_SNP [dm3] 3R_22860260_SNP [dm6]	A	G	1.268e^-49	1.673e^-45	INTERGENIC
3R	23643170	3R_23643170_SNP [dm3] 3R_27817448_SNP [dm6]	C	T	1.538e^-42	2.015e^-38	INTRON CG34353	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14420035	2R_14420035_SNP [dm3] 2R_18532530_SNP [dm6]	C	G	2.061e^-39	2.682e^-35	INTRON CG10924	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13085810	2R_13085810_SNP [dm3] 2R_17198305_SNP [dm6]	G	A	4.081e^-38	5.272e^-34	INTERGENIC
2R	12038180	2R_12038180_SNP [dm3] 2R_16150675_SNP [dm6]	T	A	5.358e^-34	6.875e^-30	UTR_5_PRIME lbk UPSTREAM CG10731	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	2671936	2L_2671936_SNP [dm3] 2L_2671936_SNP [dm6]	T	C	8.225e^-30	1.048e^-25	SYNONYMOUS_CODING Gr23a
2L	2681191	2L_2681191_SNP [dm3] 2L_2681191_SNP [dm6]	A	G	2.515e^-29	3.183e^-25	INTRON CG31690
3R	20300764	3R_20300764_SNP [dm3] 3R_24475042_SNP [dm6]	G	A	7.832e^-20	9.845e^-16	INTERGENIC
2R	2967199	2R_2967199_SNP [dm3] 2R_7079694_SNP [dm6]	A	T	5.497e^-19	6.864e^-15	INTERGENIC
X	14778636	X_14778636_SNP [dm3] X_14884603_SNP [dm6]	G	A	1.047e^-18	1.278e^-14	INTRON Flo2
3R	21211262	3R_21211262_SNP [dm3] 3R_25385540_SNP [dm6]	G	T	1.050e^-18	1.278e^-14	DOWNSTREAM CG31437 INTRON Fur1
2R	5872313	2R_5872313_SNP [dm3] 2R_9984808_SNP [dm6]	C	T	1.051e^-18	1.278e^-14	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11177745	2R_11177745_SNP [dm3] 2R_15290240_SNP [dm6]	G	A	1.058e^-18	1.278e^-14	INTRON Trpm
3R	21210865	3R_21210865_SNP [dm3] 3R_25385143_SNP [dm6]	C	T	1.058e^-18	1.278e^-14	DOWNSTREAM CG31437 INTRON Fur1
3L	2999876	3L_2999876_SNP [dm3] 3L_2999876_SNP [dm6]	A	G	1.071e^-18	1.278e^-14	INTERGENIC
3R	20578184	3R_20578184_SNP [dm3] 3R_24752462_SNP [dm6]	A	G	1.071e^-18	1.278e^-14	INTRON tld	TF binding site mE1_TFBS_cad
2R	7395526	2R_7395526_SNP [dm3] 2R_11508021_SNP [dm6]	C	A	1.990e^-18	2.269e^-14	UTR_3_PRIME inv DOWNSTREAM inv
2L	8804929	2L_8804929_SNP [dm3] 2L_8804929_SNP [dm6]	A	T	1.994e^-18	2.269e^-14	INTERGENIC
2L	8805100	2L_8805100_INS [dm3] 2L_8805100_INS [dm6]	A	AAG	1.994e^-18	2.269e^-14	INTERGENIC
2L	8805127	2L_8805127_SNP [dm3] 2L_8805127_SNP [dm6]	C	T	1.994e^-18	2.269e^-14	INTERGENIC
2L	8805128	2L_8805128_SNP [dm3] 2L_8805128_SNP [dm6]	T	A	1.994e^-18	2.269e^-14	INTERGENIC
2L	8805130	2L_8805130_SNP [dm3] 2L_8805130_SNP [dm6]	A	T	1.994e^-18	2.269e^-14	INTERGENIC
2L	16021683	2L_16021683_SNP [dm3] 2L_16021683_SNP [dm6]	T	A	2.000e^-18	2.269e^-14	INTRON beat-Ic
2L	16021703	2L_16021703_SNP [dm3] 2L_16021703_SNP [dm6]	C	T	2.000e^-18	2.269e^-14	INTRON beat-Ic
3R	21242930	3R_21242930_SNP [dm3] 3R_25417208_SNP [dm6]	A	G	2.054e^-18	2.301e^-14	INTRON Fur1
3R	21314727	3R_21314727_SNP [dm3] 3R_25489005_SNP [dm6]	G	A	2.054e^-18	2.301e^-14	SYNONYMOUS_CODING Dhap-at
2L	8805122	2L_8805122_SNP [dm3] 2L_8805122_SNP [dm6]	T	A	3.792e^-18	4.212e^-14	INTERGENIC
2L	16021699	2L_16021699_SNP [dm3] 2L_16021699_SNP [dm6]	C	A	3.804e^-18	4.212e^-14	INTRON beat-Ic
3R	19929923	3R_19929923_SNP [dm3] 3R_24104201_SNP [dm6]	C	T	3.846e^-18	4.234e^-14	SYNONYMOUS_CODING Syx1A INTRON 4EHP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	1722332	X_1722332_SNP [dm3] X_1828299_SNP [dm6]	C	T	3.990e^-18	4.341e^-14	INTRON CG42666
3R	10466792	3R_10466792_SNP [dm3] 3R_14641070_SNP [dm6]	C	T	3.990e^-18	4.341e^-14	SYNONYMOUS_CODING Cad88C INTRON CG7886
3R	23629080	3R_23629080_SNP [dm3] 3R_27803358_SNP [dm6]	G	C	9.270e^-18	1.003e^-13	INTRON CG34353
2R	2942660	2R_2942660_SNP [dm3] 2R_7055155_SNP [dm6]	C	T	1.899e^-17	2.043e^-13	UTR_3_PRIME Tsp42Ep DOWNSTREAM Tsp42En INTRON Tsp42Eo
3R	23642832	3R_23642832_SNP [dm3] 3R_27817110_SNP [dm6]	C	T	3.250e^-17	3.475e^-13	INTRON CG34353	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10276849	2L_10276849_SNP [dm3] 2L_10276849_SNP [dm6]	G	A	4.294e^-17	4.250e^-13	START_GAINED Utx UTR_5_PRIME Utx INTRON Utx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_zfh1
2R	14856759	2R_14856759_SNP [dm3] 2R_18969254_SNP [dm6]	A	G	4.294e^-17	4.250e^-13	DOWNSTREAM prod INTERGENIC
2R	14856760	2R_14856760_SNP [dm3] 2R_18969255_SNP [dm6]	G	A	4.294e^-17	4.250e^-13	DOWNSTREAM prod INTERGENIC
2R	15426089	2R_15426089_SNP [dm3] 2R_19538584_SNP [dm6]	A	T	4.294e^-17	4.250e^-13	INTRON sm
2R	15427350	2R_15427350_SNP [dm3] 2R_19539845_SNP [dm6]	A	T	4.294e^-17	4.250e^-13	INTRON sm	TF binding site mE1_TFBS_sbb
2R	15427813	2R_15427813_SNP [dm3] 2R_19540308_SNP [dm6]	C	T	4.294e^-17	4.250e^-13	INTRON sm
2R	15428583	2R_15428583_SNP [dm3] 2R_19541078_SNP [dm6]	G	A	4.294e^-17	4.250e^-13	INTRON sm
2R	15431308	2R_15431308_SNP [dm3] 2R_19543803_SNP [dm6]	G	T	4.294e^-17	4.250e^-13	INTRON sm
2R	15433473	2R_15433473_SNP [dm3] 2R_19545968_SNP [dm6]	G	T	4.294e^-17	4.250e^-13	INTRON sm	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
2R	16592817	2R_16592817_SNP [dm3] 2R_20705312_SNP [dm6]	A	G	4.294e^-17	4.250e^-13	INTRON dpr
3L	9498241	3L_9498241_SNP [dm3] 3L_9505141_SNP [dm6]	C	T	4.294e^-17	4.250e^-13	UTR_5_PRIME path	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9498820	3L_9498820_SNP [dm3] 3L_9505720_SNP [dm6]	A	G	4.294e^-17	4.250e^-13	UPSTREAM path INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	19623474	X_19623474_SNP [dm3] X_19729441_SNP [dm6]	C	T	4.294e^-17	4.250e^-13	UTR_3_PRIME CG12531
X	19623823	X_19623823_SNP [dm3] X_19729790_SNP [dm6]	T	C	4.294e^-17	4.250e^-13	UTR_3_PRIME CG12531
2L	5309267	2L_5309267_SNP [dm3] 2L_5309267_SNP [dm6]	T	A	5.091e^-17	5.011e^-13	SYNONYMOUS_CODING vri	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15796538	3L_15796538_SNP [dm3] 3L_15803438_SNP [dm6]	A	C	5.121e^-17	5.015e^-13	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	21296950	2L_21296950_SNP [dm3] 2L_21296950_SNP [dm6]	C	A	1.266e^-16	1.233e^-12	NON_SYNONYMOUS_CODING Gr39a INTRON Mio & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	2939347	2R_2939347_SNP [dm3] 2R_7051842_SNP [dm6]	G	A	1.293e^-16	1.253e^-12	UTR_3_PRIME lbm UPSTREAM Tsp42En
3R	23639598	3R_23639598_SNP [dm3] 3R_27813876_SNP [dm6]	C	T	2.010e^-16	1.937e^-12	INTRON CG34353
3R	20300848	3R_20300848_SNP [dm3] 3R_24475126_SNP [dm6]	A	G	2.182e^-16	2.092e^-12	INTERGENIC
3L	16474374	3L_16474374_SNP [dm3] 3L_16481274_SNP [dm6]	A	T	2.218e^-16	2.116e^-12	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2R	15429857	2R_15429857_SNP [dm3] 2R_19542352_SNP [dm6]	G	A	2.244e^-16	2.121e^-12	INTRON sm
3R	20300913	3R_20300913_SNP [dm3] 3R_24475191_SNP [dm6]	C	A	2.246e^-16	2.121e^-12	INTERGENIC
2R	2856838	2R_2856838_SNP [dm3] 2R_6969333_SNP [dm6]	C	T	2.265e^-16	2.128e^-12	INTRON mim & 1 other	TF binding site BDTNP1_TFBS_da
2R	2940935	2R_2940935_SNP [dm3] 2R_7053430_SNP [dm6]	G	C	3.949e^-16	3.637e^-12	NON_SYNONYMOUS_CODING Tsp42En DOWNSTREAM Tsp42Ep	TF binding site mE1_TFBS_cad
2R	2943044	2R_2943044_SNP [dm3] 2R_7055539_SNP [dm6]	C	A	3.949e^-16	3.637e^-12	UTR_3_PRIME Tsp42Ep DOWNSTREAM Tsp42Ep INTRON Tsp42Eo
2R	2943109	2R_2943109_SNP [dm3] 2R_7055604_SNP [dm6]	C	T	3.949e^-16	3.637e^-12	SPLICE_SITE_REGION Tsp42Eo SYNONYMOUS_CODING Tsp42Eo UTR_3_PRIME Tsp42Ep DOWNSTREAM Tsp42Ep
2R	2943386	2R_2943386_SNP [dm3] 2R_7055881_SNP [dm6]	G	A	3.949e^-16	3.637e^-12	SYNONYMOUS_CODING Tsp42Eo UTR_3_PRIME Tsp42Ep DOWNSTREAM Tsp42Ep
2R	2715782	2R_2715782_SNP [dm3] 2R_6828277_SNP [dm6]	G	A	4.037e^-16	3.700e^-12	UPSTREAM CG15236 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	12779445	X_12779445_DEL [dm3] X_12885412_DEL [dm6]	TTTGT	T	6.592e^-16	6.012e^-12	INTRON Pde9
2R	8245197	2R_8245197_SNP [dm3] 2R_12357692_SNP [dm6]	T	C	7.501e^-16	6.774e^-12	NON_SYNONYMOUS_CODING CG30049
2R	8245200	2R_8245200_SNP [dm3] 2R_12357695_SNP [dm6]	C	T	7.501e^-16	6.774e^-12	NON_SYNONYMOUS_CODING CG30049
2R	2941060	2R_2941060_SNP [dm3] 2R_7053555_SNP [dm6]	A	C	1.198e^-15	1.077e^-11	NON_SYNONYMOUS_CODING Tsp42En DOWNSTREAM Tsp42Ep	TF binding site mE1_TFBS_cad
2L	2656643	2L_2656643_SNP [dm3] 2L_2656643_SNP [dm6]	G	T	2.193e^-15	1.952e^-11	UTR_3_PRIME Prosbeta4R2 DOWNSTREAM Prosbeta4R2
2L	2656654	2L_2656654_SNP [dm3] 2L_2656654_SNP [dm6]	C	T	2.193e^-15	1.952e^-11	UTR_3_PRIME Prosbeta4R2 DOWNSTREAM Prosbeta4R2
3R	10438529	3R_10438529_SNP [dm3] 3R_14612807_SNP [dm6]	A	G	3.625e^-15	3.211e^-11	INTRON CG14853
2L	2656640	2L_2656640_SNP [dm3] 2L_2656640_SNP [dm6]	A	T	3.900e^-15	3.439e^-11	UTR_3_PRIME Prosbeta4R2 DOWNSTREAM Prosbeta4R2
2L	18405140	2L_18405140_SNP [dm3] 2L_18405140_SNP [dm6]	G	T	6.093e^-15	5.347e^-11	DOWNSTREAM CR44487 INTERGENIC
2L	9998690	2L_9998690_SNP [dm3] 2L_9998690_SNP [dm6]	T	C	2.009e^-14	1.755e^-10	SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4864713	X_4864713_SNP [dm3] X_4970680_SNP [dm6]	A	G	2.066e^-14	1.796e^-10	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	1585494	2L_1585494_SNP [dm3] 2L_1585494_SNP [dm6]	C	T	3.234e^-14	2.769e^-10	SYNONYMOUS_CODING CG10869 INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1861119	2L_1861119_INS [dm3] 2L_1861119_INS [dm6]	A	ATA	3.245e^-14	2.769e^-10	INTRON CG31663
2L	1861125	2L_1861125_DEL [dm3] 2L_1861125_DEL [dm6]	TCCTTTGGCAATGCT...	T	3.245e^-14	2.769e^-10	INTRON CG31663
2L	1861152	2L_1861152_SNP [dm3] 2L_1861152_SNP [dm6]	A	G	3.245e^-14	2.769e^-10	INTRON CG31663
3L	3925102	3L_3925102_SNP [dm3] 3L_3925102_SNP [dm6]	C	T	3.330e^-14	2.829e^-10	INTRON Eip63F-1
2R	14403185	2R_14403185_SNP [dm3] 2R_18515680_SNP [dm6]	C	A	3.716e^-14	3.142e^-10	INTRON CG43066
2L	1861101	2L_1861101_SNP [dm3] 2L_1861101_SNP [dm6]	A	G	8.418e^-14	7.086e^-10	INTRON CG31663
3L	17254041	3L_17254041_SNP [dm3] 3L_17260941_SNP [dm6]	A	G	1.370e^-13	1.148e^-9	DOWNSTREAM CR43874 INTRON CR43870
3R	22656430	3R_22656430_SNP [dm3] 3R_26830708_SNP [dm6]	T	G	1.383e^-13	1.154e^-9	INTRON Tl
3R	20877992	3R_20877992_SNP [dm3] 3R_25052270_SNP [dm6]	A	T	1.438e^-13	1.194e^-9	INTRON CG11791	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	15275111	2R_15275111_SNP [dm3] 2R_19387606_SNP [dm6]	G	C	2.197e^-13	1.816e^-9	SYNONYMOUS_CODING CG10081
3R	9894576	3R_9894576_SNP [dm3] 3R_14068854_SNP [dm6]	A	G	2.248e^-13	1.851e^-9	INTRON foxo
3L	18255801	3L_18255801_SNP [dm3] 3L_18262701_SNP [dm6]	T	C	4.303e^-13	3.526e^-9	INTERGENIC
2R	19509963	2R_19509963_SNP [dm3] 2R_23622440_SNP [dm6]	C	A	5.398e^-13	4.404e^-9	INTERGENIC
2L	1612471	2L_1612471_INS [dm3] 2L_1612471_INS [dm6]	A	ATT	6.512e^-13	5.290e^-9	UTR_3_PRIME CG14352 & 1 other DOWNSTREAM RFeSP
2L	9963099	2L_9963099_SNP [dm3] 2L_9963099_SNP [dm6]	C	T	6.542e^-13	5.292e^-9	SYNONYMOUS_CODING CG5850 DOWNSTREAM CR43683	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	803540	2L_803540_SNP [dm3] 2L_803540_SNP [dm6]	G	A	6.629e^-13	5.339e^-9	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10782570	3L_10782570_SNP [dm3] 3L_10789470_SNP [dm6]	C	G	6.660e^-13	5.341e^-9	EXON CR44545
2L	12025495	2L_12025495_SNP [dm3] 2L_12025495_SNP [dm6]	A	G	6.797e^-13	5.427e^-9	UPSTREAM CR44587 INTERGENIC
3L	10089232	3L_10089232_SNP [dm3] 3L_10096132_SNP [dm6]	A	G	8.180e^-13	6.448e^-9	SYNONYMOUS_CODING CG42825 INTRON dpr6
3L	15591690	3L_15591690_SNP [dm3] 3L_15598590_SNP [dm6]	T	A	8.180e^-13	6.448e^-9	INTRON RhoGAP71E
X	3954379	X_3954379_SNP [dm3] X_4060346_SNP [dm6]	G	T	8.180e^-13	6.448e^-9	INTERGENIC
3R	9891803	3R_9891803_SNP [dm3] 3R_14066081_SNP [dm6]	C	T	8.498e^-13	6.671e^-9	INTRON foxo
2L	1250129	2L_1250129_SNP [dm3] 2L_1250129_SNP [dm6]	C	T	9.948e^-13	7.654e^-9	INTERGENIC
2L	19081960	2L_19081960_SNP [dm3] 2L_19081960_SNP [dm6]	C	A	9.976e^-13	7.654e^-9	SYNONYMOUS_CODING Lim3
2R	17884612	2R_17884612_SNP [dm3] 2R_21997107_SNP [dm6]	A	G	1.003e^-12	7.654e^-9	INTRON CG34370
2L	15036568	2L_15036568_SNP [dm3] 2L_15036568_SNP [dm6]	G	T	1.008e^-12	7.654e^-9	SPLICE_SITE_REGION CIAPIN1 INTRON yellow-c & 1 other
2L	15045504	2L_15045504_SNP [dm3] 2L_15045504_SNP [dm6]	C	T	1.008e^-12	7.654e^-9	SYNONYMOUS_CODING ck
2L	15046051	2L_15046051_SNP [dm3] 2L_15046051_SNP [dm6]	T	G	1.008e^-12	7.654e^-9	INTRON ck	TF binding site mE1_TFBS_cad
2L	15046058	2L_15046058_SNP [dm3] 2L_15046058_SNP [dm6]	C	T	1.008e^-12	7.654e^-9	INTRON ck	TF binding site mE1_TFBS_cad
2L	15046078	2L_15046078_SNP [dm3] 2L_15046078_SNP [dm6]	C	T	1.008e^-12	7.654e^-9	INTRON ck	TF binding site mE1_TFBS_cad
3L	11268528	3L_11268528_SNP [dm3] 3L_11275428_SNP [dm6]	C	T	1.036e^-12	7.807e^-9	UPSTREAM CR44720 INTERGENIC
3L	11268698	3L_11268698_SNP [dm3] 3L_11275598_SNP [dm6]	A	T	1.036e^-12	7.807e^-9	INTERGENIC
3R	3847189	3R_3847189_SNP [dm3] 3R_8021467_SNP [dm6]	C	G	1.210e^-12	9.076e^-9	SYNONYMOUS_CODING CG2747	TF binding site mE1_TFBS_cad
2L	15046041	2L_15046041_SNP [dm3] 2L_15046041_SNP [dm6]	T	C	1.525e^-12	1.114e^-8	INTRON ck	TF binding site mE1_TFBS_cad
2R	14939051	2R_14939051_SNP [dm3] 2R_19051546_SNP [dm6]	G	C	1.525e^-12	1.114e^-8	INTERGENIC
2L	15049905	2L_15049905_SNP [dm3] 2L_15049905_SNP [dm6]	T	C	1.533e^-12	1.114e^-8	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15049908	2L_15049908_SNP [dm3] 2L_15049908_SNP [dm6]	C	A	1.533e^-12	1.114e^-8	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15049917	2L_15049917_SNP [dm3] 2L_15049917_SNP [dm6]	C	T	1.533e^-12	1.114e^-8	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15052230	2L_15052230_SNP [dm3] 2L_15052230_SNP [dm6]	A	G	1.533e^-12	1.114e^-8	INTRON ck	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15052435	2L_15052435_SNP [dm3] 2L_15052435_SNP [dm6]	C	A	1.533e^-12	1.114e^-8	INTRON ck	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sbb
2L	15054256	2L_15054256_SNP [dm3] 2L_15054256_SNP [dm6]	T	G	1.533e^-12	1.114e^-8	INTRON ck	regulatory region REDfly_CRMs
3L	13783200	3L_13783200_SNP [dm3] 3L_13790100_SNP [dm6]	C	T	1.838e^-12	1.330e^-8	INTRON bru-3
3L	6653472	3L_6653472_SNP [dm3] 3L_6660372_SNP [dm6]	T	A	2.057e^-12	1.483e^-8	INTERGENIC
2L	14031895	2L_14031895_SNP [dm3] 2L_14031895_SNP [dm6]	T	C	2.223e^-12	1.597e^-8	UPSTREAM CG18095 DOWNSTREAM CR45284 INTERGENIC
2L	9623113	2L_9623113_SNP [dm3] 2L_9623113_SNP [dm6]	G	T	2.381e^-12	1.704e^-8	DOWNSTREAM GlcAT-S INTERGENIC
3L	12818687	3L_12818687_SNP [dm3] 3L_12825587_SNP [dm6]	T	C	2.483e^-12	1.770e^-8	UTR_3_PRIME CG10960 DOWNSTREAM CG42588	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7823587	2L_7823587_SNP [dm3] 2L_7823587_SNP [dm6]	G	A	2.777e^-12	1.950e^-8	SYNONYMOUS_CODING CG7115
2L	7823599	2L_7823599_SNP [dm3] 2L_7823599_SNP [dm6]	T	G	2.777e^-12	1.950e^-8	SYNONYMOUS_CODING CG7115
2L	7827751	2L_7827751_SNP [dm3] 2L_7827751_SNP [dm6]	C	G	2.777e^-12	1.950e^-8	UTR_5_PRIME mts UPSTREAM mts & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	12952458	3R_12952458_SNP [dm3] 3R_17126736_SNP [dm6]	C	T	2.777e^-12	1.950e^-8	SYNONYMOUS_CODING CG17477 UPSTREAM CG31269 DOWNSTREAM CR44238	TF binding site mE1_TFBS_inv
2L	10412810	2L_10412810_SNP [dm3] 2L_10412810_SNP [dm6]	G	A	3.313e^-12	2.275e^-8	SYNONYMOUS_CODING CG5355	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12235861	3L_12235861_SNP [dm3] 3L_12242761_SNP [dm6]	A	G	3.313e^-12	2.275e^-8	INTRON app
3L	1527025	3L_1527025_SNP [dm3] 3L_1527025_SNP [dm6]	C	T	3.313e^-12	2.275e^-8	INTRON CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	1725823	3L_1725823_SNP [dm3] 3L_1725823_SNP [dm6]	A	T	3.313e^-12	2.275e^-8	DOWNSTREAM CG12035 INTRON drpr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	9463166	3L_9463166_SNP [dm3] 3L_9470066_SNP [dm6]	A	C	3.313e^-12	2.275e^-8	INTRON CG44838	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9463290	3L_9463290_SNP [dm3] 3L_9470190_SNP [dm6]	C	T	3.313e^-12	2.275e^-8	INTRON CG44838	TF binding site BDTNP1_TFBS_dl
3L	2155550	3L_2155550_DEL [dm3] 3L_2155550_DEL [dm6]	AGC	A	3.717e^-12	2.540e^-8	INTRON CG15822
2L	3005444	2L_3005444_SNP [dm3] 2L_3005444_SNP [dm6]	G	A	3.727e^-12	2.540e^-8	INTRON CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16049830	3L_16049830_SNP [dm3] 3L_16056730_SNP [dm6]	C	T	4.101e^-12	2.757e^-8	INTRON Mbs
3R	8085794	3R_8085794_SNP [dm3] 3R_12260072_SNP [dm6]	C	T	4.101e^-12	2.757e^-8	UPSTREAM CG44038 INTRON CG44037 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	23564443	3R_23564443_SNP [dm3] 3R_27738721_SNP [dm6]	T	C	4.111e^-12	2.757e^-8	INTRON Ets98B
2L	7821510	2L_7821510_SNP [dm3] 2L_7821510_SNP [dm6]	T	C	4.150e^-12	2.757e^-8	UPSTREAM CG7115 & 1 other DOWNSTREAM LanB1 INTRON CG7115	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA
X	21982650	X_21982650_SNP [dm3] X_22580814_SNP [dm6]	G	T	4.150e^-12	2.757e^-8	INTERGENIC
X	4676965	X_4676965_SNP [dm3] X_4782932_SNP [dm6]	C	A	4.150e^-12	2.757e^-8	UPSTREAM CG15471 INTERGENIC
X	4677032	X_4677032_SNP [dm3] X_4782999_SNP [dm6]	C	T	4.150e^-12	2.757e^-8	UPSTREAM CG15471 INTERGENIC
2R	20028022	2R_20028022_SNP [dm3] 2R_24140499_SNP [dm6]	G	A	4.614e^-12	3.044e^-8	INTRON Dat
2R	20028633	2R_20028633_SNP [dm3] 2R_24141110_SNP [dm6]	T	C	4.614e^-12	3.044e^-8	INTRON Dat
X	18118363	X_18118363_SNP [dm3] X_18224330_SNP [dm6]	C	T	4.840e^-12	3.172e^-8	INTRON CG33639
2L	22095229	2L_22095229_SNP [dm3] 2L_22095229_SNP [dm6]	G	A	4.896e^-12	3.172e^-8	INTERGENIC	transposable element FlyBase
2L	10214147	2L_10214147_SNP [dm3] 2L_10214147_SNP [dm6]	C	T	4.906e^-12	3.172e^-8	SYNONYMOUS_CODING Npc1a DOWNSTREAM CG4901	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2R	4911647	2R_4911647_SNP [dm3] 2R_9024142_SNP [dm6]	A	G	4.906e^-12	3.172e^-8	INTRON CG8170	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9533177	3R_9533177_SNP [dm3] 3R_13707455_SNP [dm6]	G	A	4.906e^-12	3.172e^-8	SYNONYMOUS_CODING Adgf-C	TF binding site mE1_TFBS_cad
2R	19687941	2R_19687941_SNP [dm3] 2R_23800418_SNP [dm6]	T	A	4.911e^-12	3.172e^-8	INTERGENIC
3L	2155554	3L_2155554_DEL [dm3] 3L_2155554_DEL [dm6]	ACG	A	5.456e^-12	3.512e^-8	INTRON CG15822
3L	1616193	3L_1616193_SNP [dm3] 3L_1616193_SNP [dm6]	A	T	5.793e^-12	3.716e^-8	UPSTREAM CG12105 INTRON CG33791 & 1 other
2L	3938082	2L_3938082_SNP [dm3] 2L_3938082_SNP [dm6]	C	G	5.840e^-12	3.734e^-8	INTRON fred
X	21982681	X_21982681_SNP [dm3] X_22580845_SNP [dm6]	A	T	5.891e^-12	3.753e^-8	INTERGENIC
3R	10118704	3R_10118704_SNP [dm3] 3R_14292982_SNP [dm6]	A	T	6.003e^-12	3.801e^-8	INTRON CG12207
2R	19455368	2R_19455368_SNP [dm3] 2R_23567845_SNP [dm6]	G	T	6.008e^-12	3.801e^-8	UPSTREAM apt INTRON apt
2R	4689704	2R_4689704_SNP [dm3] 2R_8802199_SNP [dm6]	C	G	6.131e^-12	3.837e^-8	INTRON sns	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	10086264	3R_10086264_SNP [dm3] 3R_14260542_SNP [dm6]	G	C	6.131e^-12	3.837e^-8	SYNONYMOUS_CODING CG14840 UPSTREAM Aats-met DOWNSTREAM CG14841	TF binding site mE1_TFBS_chinmo
X	21982731	X_21982731_SNP [dm3] X_22580895_SNP [dm6]	A	T	6.138e^-12	3.837e^-8	INTERGENIC
2L	16966722	2L_16966722_SNP [dm3] 2L_16966722_SNP [dm6]	G	C	6.146e^-12	3.837e^-8	DOWNSTREAM CR45285 INTERGENIC
3L	11344870	3L_11344870_SNP [dm3] 3L_11351770_SNP [dm6]	C	G	6.442e^-12	3.878e^-8	INTERGENIC
3L	13479818	3L_13479818_SNP [dm3] 3L_13486718_SNP [dm6]	C	T	6.442e^-12	3.878e^-8	UPSTREAM Tgi & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13480085	3L_13480085_SNP [dm3] 3L_13486985_SNP [dm6]	T	C	6.442e^-12	3.878e^-8	UTR_5_PRIME Tgi UPSTREAM Abp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	7095104	3L_7095104_SNP [dm3] 3L_7102004_SNP [dm6]	C	T	6.442e^-12	3.878e^-8	INTRON form3
3L	7095856	3L_7095856_SNP [dm3] 3L_7102756_SNP [dm6]	C	A	6.442e^-12	3.878e^-8	INTRON form3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7096029	3L_7096029_SNP [dm3] 3L_7102929_SNP [dm6]	G	T	6.442e^-12	3.878e^-8	INTRON form3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7097082	3L_7097082_SNP [dm3] 3L_7103982_SNP [dm6]	A	T	6.442e^-12	3.878e^-8	INTRON form3
3L	731001	3L_731001_SNP [dm3] 3L_731001_SNP [dm6]	A	T	6.442e^-12	3.878e^-8	INTERGENIC	TF binding site mE1_TFBS_inv
3R	8910797	3R_8910797_SNP [dm3] 3R_13085075_SNP [dm6]	C	T	6.442e^-12	3.878e^-8	UPSTREAM CR44967 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	12647362	X_12647362_SNP [dm3] X_12753329_SNP [dm6]	T	G	6.442e^-12	3.878e^-8	INTRON CR44619	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	2948992	X_2948992_SNP [dm3] X_3054959_SNP [dm6]	A	T	6.442e^-12	3.878e^-8	INTRON kirre
2L	13767916	2L_13767916_SNP [dm3] 2L_13767916_SNP [dm6]	A	T	6.828e^-12	3.908e^-8	INTRON TM9SF4
3L	14787151	3L_14787151_SNP [dm3] 3L_14794051_SNP [dm6]	C	G	6.828e^-12	3.908e^-8	NON_SYNONYMOUS_CODING CG9425	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18130055	3R_18130055_SNP [dm3] 3R_22304333_SNP [dm6]	T	A	6.828e^-12	3.908e^-8	UTR_3_PRIME CG7084 DOWNSTREAM CG7084
3R	25213344	3R_25213344_SNP [dm3] 3R_29387622_SNP [dm6]	T	C	6.828e^-12	3.908e^-8	INTRON Ptp99A	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	25497422	3R_25497422_SNP [dm3] 3R_29671700_SNP [dm6]	T	G	6.828e^-12	3.908e^-8	UTR_5_PRIME Obp99a UPSTREAM ppk19 DOWNSTREAM ppk30	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	25497628	3R_25497628_SNP [dm3] 3R_29671906_SNP [dm6]	G	A	6.828e^-12	3.908e^-8	SYNONYMOUS_CODING Obp99a UPSTREAM ppk19 DOWNSTREAM ppk30	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	25497667	3R_25497667_SNP [dm3] 3R_29671945_SNP [dm6]	C	T	6.828e^-12	3.908e^-8	SYNONYMOUS_CODING Obp99a UPSTREAM ppk19 DOWNSTREAM ppk30	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	25498729	3R_25498729_SNP [dm3] 3R_29673007_SNP [dm6]	C	T	6.828e^-12	3.908e^-8	SYNONYMOUS_CODING ppk19 DOWNSTREAM Obp99a & 1 other
3R	25945739	3R_25945739_SNP [dm3] 3R_30120017_SNP [dm6]	C	T	6.828e^-12	3.908e^-8	INTRON sima
3R	26480192	3R_26480192_SNP [dm3] 3R_30654470_SNP [dm6]	T	A	6.828e^-12	3.908e^-8	INTERGENIC
3R	26698839	3R_26698839_SNP [dm3] 3R_30873117_SNP [dm6]	C	T	6.828e^-12	3.908e^-8	UPSTREAM CG15545 INTERGENIC
3R	26699366	3R_26699366_SNP [dm3] 3R_30873644_SNP [dm6]	G	A	6.828e^-12	3.908e^-8	DOWNSTREAM CG15546 INTERGENIC
X	20651948	X_20651948_SNP [dm3] X_20780921_SNP [dm6]	C	A	6.828e^-12	3.908e^-8	NON_SYNONYMOUS_CODING CG32507 INTRON shakB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20690161	X_20690161_SNP [dm3] X_20819134_SNP [dm6]	G	C	6.828e^-12	3.908e^-8	INTRON shakB
X	4675438	X_4675438_SNP [dm3] X_4781405_SNP [dm6]	C	A	6.828e^-12	3.908e^-8	DOWNSTREAM CG15471 INTERGENIC
X	5904344	X_5904344_SNP [dm3] X_6010311_SNP [dm6]	C	T	6.828e^-12	3.908e^-8	INTRON mab-21
2R	11702096	2R_11702096_SNP [dm3] 2R_15814591_SNP [dm6]	G	A	6.870e^-12	3.908e^-8	INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	14749737	2R_14749737_SNP [dm3] 2R_18862232_SNP [dm6]	T	C	6.870e^-12	3.908e^-8	UPSTREAM CG43069 & 1 other INTERGENIC
2R	8228977	2R_8228977_SNP [dm3] 2R_12341472_SNP [dm6]	G	T	7.151e^-12	4.056e^-8	INTRON CG8839	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	15023717	3L_15023717_SNP [dm3] 3L_15030617_SNP [dm6]	G	A	7.179e^-12	4.060e^-8	INTRON Sytbeta
2L	1449022	2L_1449022_SNP [dm3] 2L_1449022_SNP [dm6]	G	A	7.274e^-12	4.067e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1453514	2L_1453514_SNP [dm3] 2L_1453514_SNP [dm6]	C	T	7.274e^-12	4.067e^-8	INTERGENIC
3L	18869380	3L_18869380_SNP [dm3] 3L_18876280_SNP [dm6]	C	T	7.280e^-12	4.067e^-8	SYNONYMOUS_CODING Ugt	TF binding site mE1_TFBS_sens
3L	18869445	3L_18869445_SNP [dm3] 3L_18876345_SNP [dm6]	G	T	7.280e^-12	4.067e^-8	SYNONYMOUS_CODING Ugt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20028703	2R_20028703_SNP [dm3] 2R_24141180_SNP [dm6]	A	C	7.619e^-12	4.211e^-8	INTRON Dat
2R	16639965	2R_16639965_SNP [dm3] 2R_20752460_SNP [dm6]	T	A	7.786e^-12	4.211e^-8	UPSTREAM CG34202 DOWNSTREAM CG34201 INTERGENIC
2R	17499374	2R_17499374_SNP [dm3] 2R_21611869_SNP [dm6]	T	C	7.786e^-12	4.211e^-8	INTRON CG15673
2R	17499392	2R_17499392_SNP [dm3] 2R_21611887_SNP [dm6]	T	A	7.786e^-12	4.211e^-8	INTRON CG15673
3L	22425828	3L_22425828_SNP [dm3] 3L_22432728_SNP [dm6]	T	A	7.786e^-12	4.211e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	6649465	3L_6649465_SNP [dm3] 3L_6656365_SNP [dm6]	A	G	7.786e^-12	4.211e^-8	INTERGENIC
3L	6649833	3L_6649833_SNP [dm3] 3L_6656733_SNP [dm6]	A	T	7.786e^-12	4.211e^-8	INTERGENIC
3L	6656339	3L_6656339_SNP [dm3] 3L_6663239_SNP [dm6]	C	A	7.786e^-12	4.211e^-8	DOWNSTREAM eIF4E-4 INTERGENIC
3L	6658475	3L_6658475_SNP [dm3] 3L_6665375_SNP [dm6]	T	C	7.786e^-12	4.211e^-8	NON_SYNONYMOUS_CODING eIF4E-4 DOWNSTREAM CR45173
3L	6660232	3L_6660232_SNP [dm3] 3L_6667132_SNP [dm6]	C	G	7.786e^-12	4.211e^-8	NON_SYNONYMOUS_CODING CG32395 UPSTREAM CR45173
3L	6660279	3L_6660279_SNP [dm3] 3L_6667179_SNP [dm6]	G	A	7.786e^-12	4.211e^-8	NON_SYNONYMOUS_CODING CG32395 UPSTREAM CR45173
2R	17139145	2R_17139145_SNP [dm3] 2R_21251640_SNP [dm6]	G	T	8.158e^-12	4.380e^-8	UPSTREAM ASPP INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2R	17139345	2R_17139345_SNP [dm3] 2R_21251840_SNP [dm6]	A	G	8.158e^-12	4.380e^-8	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_Trl
2L	16994576	2L_16994576_SNP [dm3] 2L_16994576_SNP [dm6]	G	C	8.170e^-12	4.380e^-8	DOWNSTREAM beat-IIIb INTERGENIC
2L	14011761	2L_14011761_DEL [dm3] 2L_14011761_DEL [dm6]	GCTTGCAAAG	G	8.280e^-12	4.403e^-8	INTERGENIC
2R	14565402	2R_14565402_SNP [dm3] 2R_18677897_SNP [dm6]	T	A	8.400e^-12	4.403e^-8	DOWNSTREAM CG44434 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2R	9472674	2R_9472674_SNP [dm3] 2R_13585169_SNP [dm6]	G	C	8.400e^-12	4.403e^-8	INTRON CG6191 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
3L	19921956	3L_19921956_SNP [dm3] 3L_19928856_SNP [dm6]	C	T	8.400e^-12	4.403e^-8	UTR_5_PRIME RhoGDI UPSTREAM CG8004 INTRON RhoGDI	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23680223	3R_23680223_SNP [dm3] 3R_27854501_SNP [dm6]	G	A	8.400e^-12	4.403e^-8	INTRON CG34353
X	19620811	X_19620811_SNP [dm3] X_19726778_SNP [dm6]	C	T	8.400e^-12	4.403e^-8	UTR_3_PRIME CG12531
2R	15853870	2R_15853870_SNP [dm3] 2R_19966365_SNP [dm6]	A	T	8.473e^-12	4.403e^-8	INTERGENIC
2R	7078003	2R_7078003_SNP [dm3] 2R_11190498_SNP [dm6]	C	T	8.473e^-12	4.403e^-8	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	8678820	3L_8678820_SNP [dm3] 3L_8685720_SNP [dm6]	G	T	8.473e^-12	4.403e^-8	INTERGENIC
3R	18283146	3R_18283146_SNP [dm3] 3R_22457424_SNP [dm6]	A	G	8.473e^-12	4.403e^-8	NON_SYNONYMOUS_CODING CG34376
X	20729965	X_20729965_SNP [dm3] X_20858938_SNP [dm6]	C	T	8.473e^-12	4.403e^-8	INTRON shakB	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	26547808	3R_26547808_SNP [dm3] 3R_30722086_SNP [dm6]	C	T	8.503e^-12	4.407e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14072210	3L_14072210_SNP [dm3] 3L_14079110_SNP [dm6]	T	C	9.436e^-12	4.774e^-8	INTRON btl	regulatory region REDfly_CRMs
3L	14072488	3L_14072488_SNP [dm3] 3L_14079388_SNP [dm6]	T	C	9.436e^-12	4.774e^-8	INTRON btl	regulatory region REDfly_CRMs
3L	14073144	3L_14073144_SNP [dm3] 3L_14080044_SNP [dm6]	C	T	9.436e^-12	4.774e^-8	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_sens
3L	14075406	3L_14075406_SNP [dm3] 3L_14082306_SNP [dm6]	C	T	9.436e^-12	4.774e^-8	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14076215	3L_14076215_SNP [dm3] 3L_14083115_SNP [dm6]	T	A	9.436e^-12	4.774e^-8	UTR_3_PRIME btl UPSTREAM CG8100
3L	14076643	3L_14076643_SNP [dm3] 3L_14083543_SNP [dm6]	C	T	9.436e^-12	4.774e^-8	UPSTREAM CG8100 DOWNSTREAM btl INTERGENIC
3L	14077365	3L_14077365_SNP [dm3] 3L_14084265_SNP [dm6]	A	T	9.436e^-12	4.774e^-8	NON_SYNONYMOUS_CODING CG8100
3L	2803597	3L_2803597_SNP [dm3] 3L_2803597_SNP [dm6]	G	T	9.468e^-12	4.774e^-8	INTRON CG43444
3L	730951	3L_730951_DEL [dm3] 3L_730951_DEL [dm6]	CACC	A	9.468e^-12	4.774e^-8	INTERGENIC	TF binding site mE1_TFBS_inv
3L	752491	3L_752491_SNP [dm3] 3L_752491_SNP [dm6]	A	G	9.468e^-12	4.774e^-8	UTR_3_PRIME emc INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20573918	X_20573918_DEL [dm3] X_20702891_DEL [dm6]	ACTGAA	A	9.625e^-12	4.839e^-8	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	16723112	2R_16723112_SNP [dm3] 2R_20835607_SNP [dm6]	T	A	9.762e^-12	4.895e^-8	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	10347713	2L_10347713_SNP [dm3] 2L_10347713_SNP [dm6]	A	C	9.892e^-12	4.908e^-8	DOWNSTREAM CG34367 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18102681	3R_18102681_SNP [dm3] 3R_22276959_SNP [dm6]	C	T	9.892e^-12	4.908e^-8	INTRON SKIP
3R	24603747	3R_24603747_SNP [dm3] 3R_28778025_SNP [dm6]	T	C	9.892e^-12	4.908e^-8	DOWNSTREAM CR44952 INTERGENIC
3R	26698869	3R_26698869_SNP [dm3] 3R_30873147_SNP [dm6]	G	A	9.892e^-12	4.908e^-8	UPSTREAM CG15545 INTERGENIC
2L	13767338	2L_13767338_SNP [dm3] 2L_13767338_SNP [dm6]	A	G	9.976e^-12	4.908e^-8	INTRON TM9SF4
3R	16884847	3R_16884847_SNP [dm3] 3R_21059125_SNP [dm6]	A	G	9.976e^-12	4.908e^-8	UTR_5_PRIME Mvl INTRON Mvl
3R	24857310	3R_24857310_SNP [dm3] 3R_29031588_SNP [dm6]	G	A	9.976e^-12	4.908e^-8	NON_SYNONYMOUS_CODING Ssl2 DOWNSTREAM CG1951 EXON CR45044	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1690063	2R_1690063_SNP [dm3] 2R_5802558_SNP [dm6]	A	G	1.005e^-11	4.908e^-8	INTERGENIC
3R	26097224	3R_26097224_SNP [dm3] 3R_30271502_SNP [dm6]	T	A	1.005e^-11	4.908e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3R	25497249	3R_25497249_SNP [dm3] 3R_29671527_SNP [dm6]	T	C	1.008e^-11	4.908e^-8	UPSTREAM Obp99a & 1 other DOWNSTREAM ppk30 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25497280	3R_25497280_SNP [dm3] 3R_29671558_SNP [dm6]	C	A	1.008e^-11	4.908e^-8	UPSTREAM Obp99a & 1 other DOWNSTREAM ppk30 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	25186063	3R_25186063_SNP [dm3] 3R_29360341_SNP [dm6]	G	C	1.034e^-11	4.991e^-8	INTERGENIC
3R	25189263	3R_25189263_SNP [dm3] 3R_29363541_SNP [dm6]	T	C	1.034e^-11	4.991e^-8	INTERGENIC
3R	26093595	3R_26093595_SNP [dm3] 3R_30267873_SNP [dm6]	G	A	1.034e^-11	4.991e^-8	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	1381579	2L_1381579_SNP [dm3] 2L_1381579_SNP [dm6]	A	C	1.038e^-11	4.991e^-8	SYNONYMOUS_CODING lea UTR_3_PRIME lea UPSTREAM CR44898 EXON CR44897	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	1384704	2L_1384704_SNP [dm3] 2L_1384704_SNP [dm6]	G	A	1.038e^-11	4.991e^-8	INTRON lea
2L	16293998	2L_16293998_DEL [dm3] 2L_16293998_DEL [dm6]	AAACATTTCTTCA...	A	1.057e^-11	5.067e^-8	UPSTREAM CG13258 & 2 others INTERGENIC
X	19227973	X_19227973_SNP [dm3] X_19333940_SNP [dm6]	G	A	1.065e^-11	5.087e^-8	INTRON nAChRalpha7
2R	2971453	2R_2971453_SNP [dm3] 2R_7083948_SNP [dm6]	T	C	1.066e^-11	5.087e^-8	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20733624	X_20733624_SNP [dm3] X_20862597_SNP [dm6]	G	A	1.074e^-11	5.110e^-8	INTRON shakB
X	502394	X_502394_SNP [dm3] X_608361_SNP [dm6]	C	T	1.137e^-11	5.369e^-8	INTRON CG13366	TF binding site mE1_TFBS_HSA
X	5144675	X_5144675_SNP [dm3] X_5250642_SNP [dm6]	G	T	1.137e^-11	5.369e^-8	INTRON CG15465 & 1 other
X	5144687	X_5144687_SNP [dm3] X_5250654_SNP [dm6]	G	T	1.137e^-11	5.369e^-8	INTRON CG15465 & 1 other
2L	14015251	2L_14015251_SNP [dm3] 2L_14015251_SNP [dm6]	C	T	1.157e^-11	5.451e^-8	INTRON bgm
X	20732526	X_20732526_SNP [dm3] X_20861499_SNP [dm6]	C	T	1.190e^-11	5.589e^-8	INTRON shakB
3L	9424917	3L_9424917_SNP [dm3] 3L_9431817_SNP [dm6]	C	A	1.198e^-11	5.603e^-8	INTRON MTF-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14011782	2L_14011782_SNP [dm3] 2L_14011782_SNP [dm6]	T	C	1.199e^-11	5.603e^-8	INTERGENIC
2R	16723567	2R_16723567_SNP [dm3] 2R_20836062_SNP [dm6]	A	G	1.205e^-11	5.604e^-8	UPSTREAM insc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	12144425	X_12144425_SNP [dm3] X_12250392_SNP [dm6]	C	T	1.205e^-11	5.604e^-8	INTRON Ten-a
2R	6682782	2R_6682782_SNP [dm3] 2R_10795277_SNP [dm6]	T	A	1.223e^-11	5.639e^-8	INTRON CG33144
2R	10279612	2R_10279612_SNP [dm3] 2R_14392107_SNP [dm6]	G	C	1.225e^-11	5.639e^-8	UTR_3_PRIME CG10104
2R	10279615	2R_10279615_SNP [dm3] 2R_14392110_SNP [dm6]	A	C	1.225e^-11	5.639e^-8	UTR_3_PRIME CG10104
X	16915788	X_16915788_SNP [dm3] X_17021755_SNP [dm6]	A	G	1.225e^-11	5.639e^-8	UPSTREAM CG43996 INTRON CG45002
3R	18130071	3R_18130071_SNP [dm3] 3R_22304349_SNP [dm6]	T	A	1.230e^-11	5.649e^-8	UTR_3_PRIME CG7084 DOWNSTREAM CG7084
3L	12495393	3L_12495393_SNP [dm3] 3L_12502293_SNP [dm6]	G	A	1.237e^-11	5.668e^-8	NON_SYNONYMOUS_CODING CG10681 UPSTREAM CG10638 DOWNSTREAM CG10646	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7316301	2R_7316301_SNP [dm3] 2R_11428796_SNP [dm6]	A	G	1.268e^-11	5.795e^-8	UPSTREAM Drip INTRON Drip
2R	16716583	2R_16716583_SNP [dm3] 2R_20829078_SNP [dm6]	G	T	1.283e^-11	5.803e^-8	SYNONYMOUS_CODING sktl INTRON insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12144300	X_12144300_SNP [dm3] X_12250267_SNP [dm6]	A	G	1.283e^-11	5.803e^-8	INTRON Ten-a
2L	11934124	2L_11934124_SNP [dm3] 2L_11934124_SNP [dm6]	G	C	1.285e^-11	5.803e^-8	UPSTREAM Or33a INTERGENIC
2L	11934132	2L_11934132_SNP [dm3] 2L_11934132_SNP [dm6]	G	A	1.285e^-11	5.803e^-8	UPSTREAM Or33a INTERGENIC
2L	11934135	2L_11934135_SNP [dm3] 2L_11934135_SNP [dm6]	A	T	1.285e^-11	5.803e^-8	UPSTREAM Or33a INTERGENIC
2R	9122289	2R_9122289_SNP [dm3] 2R_13234784_SNP [dm6]	C	T	1.324e^-11	5.901e^-8	SYNONYMOUS_CODING CG4670	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14077020	3L_14077020_SNP [dm3] 3L_14083920_SNP [dm6]	T	C	1.337e^-11	5.901e^-8	DOWNSTREAM btl INTRON CG8100
X	3135522	X_3135522_SNP [dm3] X_3241489_SNP [dm6]	C	A	1.343e^-11	5.901e^-8	UPSTREAM ng2 & 1 other DOWNSTREAM ng3 INTRON dnc
2L	22214645	2L_22214645_SNP [dm3] 2L_22214645_SNP [dm6]	G	T	1.345e^-11	5.901e^-8	UPSTREAM Ir40a INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7816105	2L_7816105_SNP [dm3] 2L_7816105_SNP [dm6]	G	A	1.345e^-11	5.901e^-8	SYNONYMOUS_CODING LanB1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14585702	2R_14585702_SNP [dm3] 2R_18698197_SNP [dm6]	T	A	1.345e^-11	5.901e^-8	DOWNSTREAM CG15071 INTRON Sik3
2R	19527622	2R_19527622_SNP [dm3] 2R_23640099_SNP [dm6]	C	T	1.345e^-11	5.901e^-8	INTRON retn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	16748837	3L_16748837_SNP [dm3] 3L_16755737_SNP [dm6]	C	T	1.345e^-11	5.901e^-8	DOWNSTREAM CG42852 INTERGENIC
3L	3309455	3L_3309455_SNP [dm3] 3L_3309455_SNP [dm6]	T	C	1.345e^-11	5.901e^-8	UPSTREAM ZnT63C INTRON ZnT63C
3L	3311818	3L_3311818_SNP [dm3] 3L_3311818_SNP [dm6]	C	T	1.345e^-11	5.901e^-8	SYNONYMOUS_CODING ZnT63C	TF binding site mE1_TFBS_cad
3L	3311950	3L_3311950_SNP [dm3] 3L_3311950_SNP [dm6]	T	C	1.345e^-11	5.901e^-8	SYNONYMOUS_CODING ZnT63C	TF binding site mE1_TFBS_cad
3R	20008236	3R_20008236_SNP [dm3] 3R_24182514_SNP [dm6]	C	G	1.345e^-11	5.901e^-8	INTRON CG13606	TF binding site mE1_TFBS_chinmo
3L	8397926	3L_8397926_SNP [dm3] 3L_8404826_SNP [dm6]	G	A	1.349e^-11	5.901e^-8	SYNONYMOUS_CODING CG33057 UTR_5_PRIME mkg-p UPSTREAM CG13667 & 1 other INTRON mkg-p	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	10978348	3L_10978348_SNP [dm3] 3L_10985248_SNP [dm6]	A	T	1.351e^-11	5.901e^-8	INTRON klu	TF binding site BDTNP1_TFBS_dl
2R	14420804	2R_14420804_SNP [dm3] 2R_18533299_SNP [dm6]	T	G	1.356e^-11	5.907e^-8	SYNONYMOUS_CODING CG10924	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	11726474	3R_11726474_SNP [dm3] 3R_15900752_SNP [dm6]	A	T	1.372e^-11	5.965e^-8	INTRON glob1	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	21126188	3R_21126188_SNP [dm3] 3R_25300466_SNP [dm6]	C	G	1.381e^-11	5.982e^-8	UPSTREAM CG31288 & 1 other INTERGENIC
3L	14076553	3L_14076553_SNP [dm3] 3L_14083453_SNP [dm6]	A	G	1.383e^-11	5.982e^-8	UPSTREAM CG8100 DOWNSTREAM btl INTERGENIC
X	14011509	X_14011509_SNP [dm3] X_14117476_SNP [dm6]	G	T	1.387e^-11	5.987e^-8	DOWNSTREAM tRNA:S7:12Eg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10092937	2R_10092937_SNP [dm3] 2R_14205432_SNP [dm6]	G	T	1.415e^-11	6.089e^-8	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13452482	X_13452482_SNP [dm3] X_13558449_SNP [dm6]	C	T	1.417e^-11	6.089e^-8	DOWNSTREAM CG32631 INTERGENIC
3R	26698884	3R_26698884_SNP [dm3] 3R_30873162_SNP [dm6]	T	C	1.433e^-11	6.127e^-8	UPSTREAM CG15545 INTERGENIC
X	4675423	X_4675423_SNP [dm3] X_4781390_SNP [dm6]	T	C	1.433e^-11	6.127e^-8	DOWNSTREAM CG15471 INTERGENIC
3R	18111482	3R_18111482_SNP [dm3] 3R_22285760_SNP [dm6]	G	T	1.472e^-11	6.275e^-8	INTRON SKIP	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14787368	3L_14787368_SNP [dm3] 3L_14794268_SNP [dm6]	C	T	1.474e^-11	6.275e^-8	NON_SYNONYMOUS_CODING CG9425	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	23480476	3R_23480476_SNP [dm3] 3R_27654754_SNP [dm6]	G	A	1.487e^-11	6.305e^-8	INTRON tau	TF binding site mE1_TFBS_inv
2L	2433695	2L_2433695_SNP [dm3] 2L_2433695_SNP [dm6]	T	G	1.488e^-11	6.305e^-8	INTRON dpp
X	4675224	X_4675224_INS [dm3] X_4781191_INS [dm6]	C	CC	1.498e^-11	6.333e^-8	INTERGENIC
3R	27760658	3R_27760658_SNP [dm3] 3R_31934936_SNP [dm6]	T	A	1.510e^-11	6.371e^-8	INTRON heph
2R	17937148	2R_17937148_SNP [dm3] 2R_22049643_SNP [dm6]	T	C	1.516e^-11	6.377e^-8	INTERGENIC
3L	11252488	3L_11252488_SNP [dm3] 3L_11259388_SNP [dm6]	G	A	1.519e^-11	6.377e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	22208089	2L_22208089_DEL [dm3] 2L_22208089_DEL [dm6]	AA	A	1.558e^-11	6.526e^-8	INTRON Ir40a	transposable element FlyBase
3L	18266380	3L_18266380_SNP [dm3] 3L_18273280_SNP [dm6]	T	C	1.601e^-11	6.692e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19858113	3R_19858113_SNP [dm3] 3R_24032391_SNP [dm6]	T	A	1.617e^-11	6.744e^-8	SPLICE_SITE_REGION Ime4 UPSTREAM KrT95D INTRON Ime4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16716568	2R_16716568_SNP [dm3] 2R_20829063_SNP [dm6]	A	G	1.630e^-11	6.783e^-8	SYNONYMOUS_CODING sktl INTRON insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5144581	X_5144581_SNP [dm3] X_5250548_SNP [dm6]	A	G	1.651e^-11	6.856e^-8	SYNONYMOUS_CODING rg UTR_3_PRIME CG15465
3R	17067583	3R_17067583_SNP [dm3] 3R_21241861_SNP [dm6]	G	A	1.655e^-11	6.857e^-8	UPSTREAM CG5892 INTERGENIC	regulatory region REDfly_CRMs
2R	17249132	2R_17249132_SNP [dm3] 2R_21361627_SNP [dm6]	G	C	1.664e^-11	6.879e^-8	INTRON cv-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	9191350	2L_9191350_INS [dm3] 2L_9191350_INS [dm6]	G	GCGATGG	1.676e^-11	6.916e^-8	INTRON tai	TF binding site mE1_TFBS_HSA
3L	12727908	3L_12727908_SNP [dm3] 3L_12734808_SNP [dm6]	A	G	1.684e^-11	6.932e^-8	UPSTREAM Ptp69D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	3741414	3R_3741414_SNP [dm3] 3R_7915692_SNP [dm6]	G	A	1.722e^-11	7.073e^-8	DOWNSTREAM CG10445 INTRON CG2678
3R	14540618	3R_14540618_SNP [dm3] 3R_18714896_SNP [dm6]	C	A	1.731e^-11	7.092e^-8	UTR_3_PRIME VAChT INTRON Cha
3R	20005952	3R_20005952_INS [dm3] 3R_24180230_INS [dm6]	T	TAATGCCCA	1.738e^-11	7.105e^-8	INTRON CG13606	TF binding site mE1_TFBS_chinmo
2L	15330127	2L_15330127_INS [dm3] 2L_15330127_INS [dm6]	T	TT	1.751e^-11	7.145e^-8	INTERGENIC
3R	26087579	3R_26087579_DEL [dm3] 3R_30261857_DEL [dm6]	TCGAGGGCTTCGAGTT...	T	1.775e^-11	7.227e^-8	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	18488061	3L_18488061_SNP [dm3] 3L_18494961_SNP [dm6]	G	T	1.784e^-11	7.229e^-8	INTRON AstC-R2
3R	14539311	3R_14539311_SNP [dm3] 3R_18713589_SNP [dm6]	G	A	1.785e^-11	7.229e^-8	SYNONYMOUS_CODING VAChT INTRON Cha	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5614158	2R_5614158_SNP [dm3] 2R_9726653_SNP [dm6]	G	A	1.789e^-11	7.229e^-8	INTRON sqa
2R	16728533	2R_16728533_SNP [dm3] 2R_20841028_SNP [dm6]	T	C	1.795e^-11	7.229e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	27005477	3R_27005477_SNP [dm3] 3R_31179755_SNP [dm6]	G	A	1.795e^-11	7.229e^-8	UTR_3_PRIME mesh INTRON mesh	TF binding site mE1_TFBS_cad
3L	8949995	3L_8949995_SNP [dm3] 3L_8956895_SNP [dm6]	T	A	1.813e^-11	7.285e^-8	DOWNSTREAM GNBP3 INTRON mRpL12	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17140656	2R_17140656_SNP [dm3] 2R_21253151_SNP [dm6]	T	G	1.832e^-11	7.343e^-8	INTERGENIC
3R	10689173	3R_10689173_SNP [dm3] 3R_14863451_SNP [dm6]	A	T	1.843e^-11	7.375e^-8	INTRON btsz
2R	7077991	2R_7077991_SNP [dm3] 2R_11190486_SNP [dm6]	A	G	1.851e^-11	7.388e^-8	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	1309438	2L_1309438_SNP [dm3] 2L_1309438_SNP [dm6]	G	C	1.874e^-11	7.467e^-8	INTERGENIC
2L	11934021	2L_11934021_SNP [dm3] 2L_11934021_SNP [dm6]	T	A	1.904e^-11	7.568e^-8	UPSTREAM Or33a INTERGENIC
2L	11934229	2L_11934229_SNP [dm3] 2L_11934229_SNP [dm6]	G	T	1.927e^-11	7.635e^-8	UPSTREAM Or33a INTERGENIC
2L	11871456	2L_11871456_SNP [dm3] 2L_11871456_SNP [dm6]	G	A	1.934e^-11	7.635e^-8	INTRON Pde1c
2L	18769981	2L_18769981_SNP [dm3] 2L_18769981_SNP [dm6]	C	T	1.941e^-11	7.635e^-8	INTRON ham
2L	11293745	2L_11293745_SNP [dm3] 2L_11293745_SNP [dm6]	A	G	1.945e^-11	7.635e^-8	INTERGENIC
3L	15367924	3L_15367924_SNP [dm3] 3L_15374824_SNP [dm6]	T	C	1.945e^-11	7.635e^-8	INTERGENIC
2R	12384141	2R_12384141_SNP [dm3] 2R_16496636_SNP [dm6]	C	T	1.945e^-11	7.635e^-8	DOWNSTREAM CG7813 INTERGENIC	TF binding site mE1_TFBS_inv
2L	7612684	2L_7612684_SNP [dm3] 2L_7612684_SNP [dm6]	A	T	1.961e^-11	7.680e^-8	INTRON CG6739
2L	10297493	2L_10297493_SNP [dm3] 2L_10297493_SNP [dm6]	T	C	2.011e^-11	7.777e^-8	NON_SYNONYMOUS_CODING CYLD UPSTREAM CR44968	TF binding site mE1_TFBS_sens
2L	8990238	2L_8990238_SNP [dm3] 2L_8990238_SNP [dm6]	A	G	2.011e^-11	7.777e^-8	UPSTREAM rost INTERGENIC
2R	19505689	2R_19505689_SNP [dm3] 2R_23618166_SNP [dm6]	T	C	2.011e^-11	7.777e^-8	INTERGENIC
3L	16412642	3L_16412642_SNP [dm3] 3L_16419542_SNP [dm6]	C	T	2.011e^-11	7.777e^-8	UPSTREAM CG33158 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	16412732	3L_16412732_SNP [dm3] 3L_16419632_SNP [dm6]	G	A	2.011e^-11	7.777e^-8	UTR_5_PRIME CG33158 UPSTREAM Aats-tyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	2766672	X_2766672_SNP [dm3] X_2872639_SNP [dm6]	G	A	2.011e^-11	7.777e^-8	NON_SYNONYMOUS_CODING CG14416 INTRON kirre
3R	26090619	3R_26090619_SNP [dm3] 3R_30264897_SNP [dm6]	G	A	2.062e^-11	7.958e^-8	INTERGENIC	silencer mE1_HDAC_PRE
2R	16724762	2R_16724762_SNP [dm3] 2R_20837257_SNP [dm6]	G	C	2.120e^-11	8.165e^-8	UPSTREAM CR44667 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_Trl
3L	15367777	3L_15367777_SNP [dm3] 3L_15374677_SNP [dm6]	A	T	2.144e^-11	8.240e^-8	INTERGENIC
3L	7173924	3L_7173924_SNP [dm3] 3L_7180824_SNP [dm6]	A	G	2.177e^-11	8.248e^-8	INTRON Dscam2	TF binding site mE1_TFBS_inv
3R	15249538	3R_15249538_SNP [dm3] 3R_19423816_SNP [dm6]	C	G	2.179e^-11	8.248e^-8	UTR_3_PRIME CG3517 INTRON CG31221
3R	15249539	3R_15249539_SNP [dm3] 3R_19423817_SNP [dm6]	A	T	2.179e^-11	8.248e^-8	UTR_3_PRIME CG3517 INTRON CG31221
2R	14270928	2R_14270928_SNP [dm3] 2R_18383423_SNP [dm6]	G	C	2.199e^-11	8.248e^-8	UPSTREAM IM1 & 1 other INTERGENIC
3L	18263146	3L_18263146_SNP [dm3] 3L_18270046_SNP [dm6]	T	A	2.204e^-11	8.248e^-8	INTERGENIC
3R	18132569	3R_18132569_SNP [dm3] 3R_22306847_SNP [dm6]	C	T	2.222e^-11	8.248e^-8	INTERGENIC
2L	11534880	2L_11534880_SNP [dm3] 2L_11534880_SNP [dm6]	T	A	2.287e^-11	8.248e^-8	UPSTREAM CR42743 INTERGENIC
2L	1350320	2L_1350320_SNP [dm3] 2L_1350320_SNP [dm6]	G	A	2.290e^-11	8.248e^-8	INTERGENIC
3L	15369297	3L_15369297_SNP [dm3] 3L_15376197_SNP [dm6]	A	C	2.298e^-11	8.248e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13576277	2R_13576277_SNP [dm3] 2R_17688772_SNP [dm6]	C	G	2.301e^-11	8.248e^-8	SYNONYMOUS_CODING HPS4	TF binding site mE1_TFBS_HSA
2R	14242907	2R_14242907_SNP [dm3] 2R_18355402_SNP [dm6]	T	C	2.301e^-11	8.248e^-8	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	14244378	2R_14244378_SNP [dm3] 2R_18356873_SNP [dm6]	G	A	2.301e^-11	8.248e^-8	START_GAINED sbb UTR_5_PRIME sbb INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14261212	2R_14261212_SNP [dm3] 2R_18373707_SNP [dm6]	T	C	2.301e^-11	8.248e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19526363	2R_19526363_DEL [dm3] 2R_23638840_DEL [dm6]	AA	A	2.301e^-11	8.248e^-8	INTRON retn & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	19526380	2R_19526380_SNP [dm3] 2R_23638857_SNP [dm6]	T	C	2.301e^-11	8.248e^-8	INTRON retn & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	10033333	3L_10033333_SNP [dm3] 3L_10040233_SNP [dm6]	T	C	2.301e^-11	8.248e^-8	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
3L	12485699	3L_12485699_SNP [dm3] 3L_12492599_SNP [dm6]	G	A	2.301e^-11	8.248e^-8	SYNONYMOUS_CODING CG10657 EXON CR45682	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12694516	3L_12694516_SNP [dm3] 3L_12701416_SNP [dm6]	G	A	2.301e^-11	8.248e^-8	INTRON mirr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14876581	3L_14876581_SNP [dm3] 3L_14883481_SNP [dm6]	A	T	2.301e^-11	8.248e^-8	INTERGENIC
3L	14876582	3L_14876582_SNP [dm3] 3L_14883482_SNP [dm6]	T	C	2.301e^-11	8.248e^-8	INTERGENIC
3L	14876594	3L_14876594_SNP [dm3] 3L_14883494_SNP [dm6]	A	C	2.301e^-11	8.248e^-8	INTERGENIC
3L	15763941	3L_15763941_SNP [dm3] 3L_15770841_SNP [dm6]	G	C	2.301e^-11	8.248e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15773656	3L_15773656_SNP [dm3] 3L_15780556_SNP [dm6]	T	A	2.301e^-11	8.248e^-8	INTERGENIC
3L	15773658	3L_15773658_SNP [dm3] 3L_15780558_SNP [dm6]	C	T	2.301e^-11	8.248e^-8	INTERGENIC
3R	10455413	3R_10455413_SNP [dm3] 3R_14629691_SNP [dm6]	G	A	2.301e^-11	8.248e^-8	SYNONYMOUS_CODING CG7886 UPSTREAM Cad88C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11101572	3R_11101572_SNP [dm3] 3R_15275850_SNP [dm6]	A	G	2.301e^-11	8.248e^-8	SYNONYMOUS_CODING CG4338 UPSTREAM Cp190 DOWNSTREAM MRG15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	11101752	3R_11101752_SNP [dm3] 3R_15276030_SNP [dm6]	C	A	2.301e^-11	8.248e^-8	NON_SYNONYMOUS_CODING CG4338 UPSTREAM Cp190 DOWNSTREAM MRG15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	11102117	3R_11102117_SNP [dm3] 3R_15276395_SNP [dm6]	C	G	2.301e^-11	8.248e^-8	NON_SYNONYMOUS_CODING CG4338 DOWNSTREAM MRG15	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11102352	3R_11102352_SNP [dm3] 3R_15276630_SNP [dm6]	G	A	2.301e^-11	8.248e^-8	SYNONYMOUS_CODING MRG15 DOWNSTREAM CG4338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11102400	3R_11102400_SNP [dm3] 3R_15276678_SNP [dm6]	A	G	2.301e^-11	8.248e^-8	SYNONYMOUS_CODING MRG15 DOWNSTREAM CG4338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11102475	3R_11102475_SNP [dm3] 3R_15276753_SNP [dm6]	G	C	2.301e^-11	8.248e^-8	SYNONYMOUS_CODING MRG15 DOWNSTREAM CG4338	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	11107588	3R_11107588_SNP [dm3] 3R_15281866_SNP [dm6]	A	T	2.301e^-11	8.248e^-8	INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	11107603	3R_11107603_SNP [dm3] 3R_15281881_SNP [dm6]	T	C	2.301e^-11	8.248e^-8	INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	470878	X_470878_SNP [dm3] X_576845_SNP [dm6]	T	C	2.301e^-11	8.248e^-8	UTR_3_PRIME Appl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
X	471166	X_471166_SNP [dm3] X_577133_SNP [dm6]	G	C	2.301e^-11	8.248e^-8	UTR_3_PRIME Appl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15422264	2L_15422264_SNP [dm3] 2L_15422264_SNP [dm6]	T	C	2.385e^-11	8.516e^-8	INTERGENIC
2L	15422266	2L_15422266_DEL [dm3] 2L_15422266_DEL [dm6]	TCAAGTCTTAT...	T	2.385e^-11	8.516e^-8	INTERGENIC
2L	22215235	2L_22215235_SNP [dm3] 2L_22215235_SNP [dm6]	A	G	2.390e^-11	8.516e^-8	UPSTREAM Ir40a INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9879219	3R_9879219_SNP [dm3] 3R_14053497_SNP [dm6]	C	T	2.453e^-11	8.726e^-8	INTERGENIC
2L	10885354	2L_10885354_SNP [dm3] 2L_10885354_SNP [dm6]	C	A	2.469e^-11	8.752e^-8	INTERGENIC
2L	15422217	2L_15422217_SNP [dm3] 2L_15422217_SNP [dm6]	T	C	2.470e^-11	8.752e^-8	INTERGENIC
3R	20129780	3R_20129780_DEL [dm3] 3R_24304058_DEL [dm6]	AGTTGCCCAATTCATCTCAG...	A	2.487e^-11	8.796e^-8	INTRON crb
2R	10648996	2R_10648996_SNP [dm3] 2R_14761491_SNP [dm6]	C	A	2.558e^-11	9.031e^-8	UTR_3_PRIME Spred
2R	5408346	2R_5408346_SNP [dm3] 2R_9520841_SNP [dm6]	T	C	2.568e^-11	9.048e^-8	INTRON brp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21351462	3R_21351462_SNP [dm3] 3R_25525740_SNP [dm6]	G	A	2.579e^-11	9.070e^-8	INTRON msi
3R	1768470	3R_1768470_SNP [dm3] 3R_5942748_SNP [dm6]	C	T	2.590e^-11	9.091e^-8	INTRON CG34113
3R	17100604	3R_17100604_SNP [dm3] 3R_21274882_SNP [dm6]	T	C	2.701e^-11	9.462e^-8	DOWNSTREAM CG3301 INTRON CG3301
3L	8950906	3L_8950906_SNP [dm3] 3L_8957806_SNP [dm6]	A	T	2.767e^-11	9.676e^-8	DOWNSTREAM mRpL12 INTERGENIC
3R	2983929	3R_2983929_SNP [dm3] 3R_7158207_SNP [dm6]	G	A	2.806e^-11	9.793e^-8	INTERGENIC
3L	14649966	3L_14649966_DEL [dm3] 3L_14656866_DEL [dm6]	GACTGG	G	2.851e^-11	9.923e^-8	INTRON dlp	TF binding site mE1_TFBS_cad
2L	11934215	2L_11934215_SNP [dm3] 2L_11934215_SNP [dm6]	T	A	2.854e^-11	9.923e^-8	UPSTREAM Or33a INTERGENIC
2L	4678911	2L_4678911_SNP [dm3] 2L_4678911_SNP [dm6]	G	A	2.870e^-11	9.963e^-8	INTERGENIC
3L	14940077	3L_14940077_DEL [dm3] 3L_14946977_DEL [dm6]	TCAT	T	2.897e^-11	1.004e^-7	UPSTREAM BobA INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	2682405	3L_2682405_SNP [dm3] 3L_2682405_SNP [dm6]	G	A	2.909e^-11	1.006e^-7	NON_SYNONYMOUS_CODING Fife
3L	9424800	3L_9424800_SNP [dm3] 3L_9431700_SNP [dm6]	C	T	2.976e^-11	1.025e^-7	INTRON MTF-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9424809	3L_9424809_SNP [dm3] 3L_9431709_SNP [dm6]	A	G	2.976e^-11	1.025e^-7	INTRON MTF-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	11101725	3R_11101725_SNP [dm3] 3R_15276003_SNP [dm6]	G	T	3.005e^-11	1.033e^-7	SYNONYMOUS_CODING CG4338 UPSTREAM Cp190 DOWNSTREAM MRG15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	12036670	2R_12036670_SNP [dm3] 2R_16149165_SNP [dm6]	A	G	3.056e^-11	1.037e^-7	SYNONYMOUS_CODING CG10731 UPSTREAM Ext2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	12037343	2R_12037343_SNP [dm3] 2R_16149838_SNP [dm6]	T	A	3.056e^-11	1.037e^-7	UPSTREAM lbk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	19526362	2R_19526362_SNP [dm3] 2R_23638839_SNP [dm6]	A	T	3.108e^-11	1.037e^-7	INTRON retn & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	1757898	3R_1757898_DEL [dm3] 3R_5932176_DEL [dm6]	AAA	A	3.134e^-11	1.037e^-7	INTRON CG34113
3L	23248871	3L_23248871_SNP [dm3] 3L_23255771_SNP [dm6]	A	T	3.147e^-11	1.037e^-7	INTRON nAChRalpha4
3L	7094840	3L_7094840_SNP [dm3] 3L_7101740_SNP [dm6]	G	A	3.158e^-11	1.037e^-7	INTRON form3
3R	11107595	3R_11107595_SNP [dm3] 3R_15281873_SNP [dm6]	G	T	3.158e^-11	1.037e^-7	INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22863613	3R_22863613_SNP [dm3] 3R_27037891_SNP [dm6]	A	G	3.158e^-11	1.037e^-7	INTRON RYa-R	TF binding site mE1_TFBS_cad
3R	24736170	3R_24736170_SNP [dm3] 3R_28910448_SNP [dm6]	G	A	3.224e^-11	1.037e^-7	SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	21803775	3L_21803775_SNP [dm3] 3L_21810675_SNP [dm6]	G	T	3.254e^-11	1.037e^-7	INTRON eg	TF binding site mE1_TFBS_sens
X	469368	X_469368_SNP [dm3] X_575335_SNP [dm6]	C	T	3.264e^-11	1.037e^-7	SYNONYMOUS_CODING Appl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15368005	3L_15368005_SNP [dm3] 3L_15374905_SNP [dm6]	G	A	3.277e^-11	1.037e^-7	INTERGENIC
3L	15366735	3L_15366735_SNP [dm3] 3L_15373635_SNP [dm6]	C	G	3.291e^-11	1.037e^-7	INTERGENIC
3L	15366836	3L_15366836_DEL [dm3] 3L_15373736_DEL [dm6]	ATATTA	A	3.291e^-11	1.037e^-7	INTERGENIC
3L	15367505	3L_15367505_SNP [dm3] 3L_15374405_SNP [dm6]	A	G	3.291e^-11	1.037e^-7	INTERGENIC
3L	15367575	3L_15367575_SNP [dm3] 3L_15374475_SNP [dm6]	C	T	3.291e^-11	1.037e^-7	INTERGENIC
3L	15367581	3L_15367581_SNP [dm3] 3L_15374481_SNP [dm6]	G	A	3.291e^-11	1.037e^-7	INTERGENIC
3L	15367622	3L_15367622_SNP [dm3] 3L_15374522_SNP [dm6]	T	A	3.291e^-11	1.037e^-7	INTERGENIC
3L	15367626	3L_15367626_SNP [dm3] 3L_15374526_SNP [dm6]	T	C	3.291e^-11	1.037e^-7	INTERGENIC
3L	15367627	3L_15367627_SNP [dm3] 3L_15374527_SNP [dm6]	G	T	3.291e^-11	1.037e^-7	INTERGENIC
3L	15367813	3L_15367813_SNP [dm3] 3L_15374713_SNP [dm6]	C	T	3.291e^-11	1.037e^-7	INTERGENIC
3L	15367819	3L_15367819_SNP [dm3] 3L_15374719_SNP [dm6]	A	T	3.291e^-11	1.037e^-7	INTERGENIC
3L	15367853	3L_15367853_SNP [dm3] 3L_15374753_SNP [dm6]	T	G	3.291e^-11	1.037e^-7	INTERGENIC
2R	12622488	2R_12622488_SNP [dm3] 2R_16734983_SNP [dm6]	C	T	3.292e^-11	1.037e^-7	INTERGENIC
3R	3622111	3R_3622111_SNP [dm3] 3R_7796389_SNP [dm6]	C	G	3.294e^-11	1.037e^-7	NON_SYNONYMOUS_CODING CG2641 DOWNSTREAM CG18744
2R	14267563	2R_14267563_SNP [dm3] 2R_18380058_SNP [dm6]	G	C	3.295e^-11	1.037e^-7	INTERGENIC
X	11707310	X_11707310_SNP [dm3] X_11813277_SNP [dm6]	T	C	3.296e^-11	1.037e^-7	INTRON CG1578	TF binding site mE1_TFBS_inv
3R	14252566	3R_14252566_INS [dm3] 3R_18426844_INS [dm6]	G	GTT	3.298e^-11	1.037e^-7	FRAME_SHIFT fru DOWNSTREAM fru INTRON fru	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14252570	3R_14252570_INS [dm3] 3R_18426848_INS [dm6]	C	CT	3.298e^-11	1.037e^-7	FRAME_SHIFT fru DOWNSTREAM fru INTRON fru	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15652263	3R_15652263_SNP [dm3] 3R_19826541_SNP [dm6]	A	T	3.298e^-11	1.037e^-7	INTRON bnl
3R	15652749	3R_15652749_SNP [dm3] 3R_19827027_SNP [dm6]	A	C	3.298e^-11	1.037e^-7	INTRON bnl	TF binding site mE1_TFBS_HSA
3R	15652970	3R_15652970_SNP [dm3] 3R_19827248_SNP [dm6]	G	A	3.298e^-11	1.037e^-7	INTRON bnl	TF binding site mE1_TFBS_HSA
3R	15653815	3R_15653815_SNP [dm3] 3R_19828093_SNP [dm6]	C	G	3.298e^-11	1.037e^-7	SYNONYMOUS_CODING bnl	TF binding site mE1_TFBS_HSA
3R	15653819	3R_15653819_SNP [dm3] 3R_19828097_SNP [dm6]	G	A	3.298e^-11	1.037e^-7	NON_SYNONYMOUS_CODING bnl	TF binding site mE1_TFBS_HSA
3R	15653820	3R_15653820_SNP [dm3] 3R_19828098_SNP [dm6]	G	T	3.298e^-11	1.037e^-7	NON_SYNONYMOUS_CODING bnl	TF binding site mE1_TFBS_HSA
3R	15654311	3R_15654311_SNP [dm3] 3R_19828589_SNP [dm6]	G	T	3.298e^-11	1.037e^-7	UTR_5_PRIME bnl
3R	23259219	3R_23259219_SNP [dm3] 3R_27433497_SNP [dm6]	A	T	3.298e^-11	1.037e^-7	INTRON side
3R	23259489	3R_23259489_SNP [dm3] 3R_27433767_SNP [dm6]	C	A	3.298e^-11	1.037e^-7	INTRON side
3R	23259866	3R_23259866_SNP [dm3] 3R_27434144_SNP [dm6]	C	T	3.298e^-11	1.037e^-7	INTRON side	TF binding site BDTNP1_TFBS_twi
3L	14705561	3L_14705561_SNP [dm3] 3L_14712461_SNP [dm6]	G	A	3.308e^-11	1.037e^-7	INTRON ome
3L	14706344	3L_14706344_SNP [dm3] 3L_14713244_SNP [dm6]	G	C	3.308e^-11	1.037e^-7	INTRON ome
X	501135	X_501135_SNP [dm3] X_607102_SNP [dm6]	T	C	3.323e^-11	1.037e^-7	INTRON CG13366	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	13997943	2R_13997943_SNP [dm3] 2R_18110438_SNP [dm6]	T	A	3.375e^-11	1.037e^-7	UTR_3_PRIME CG34196
2R	13997980	2R_13997980_SNP [dm3] 2R_18110475_SNP [dm6]	C	T	3.375e^-11	1.037e^-7	UTR_3_PRIME CG34196
3R	11107597	3R_11107597_SNP [dm3] 3R_15281875_SNP [dm6]	A	G	3.375e^-11	1.037e^-7	INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	4555147	X_4555147_INS [dm3] X_4661114_INS [dm6]	G	AA	3.375e^-11	1.037e^-7	INTRON CG3009
2L	5044118	2L_5044118_SNP [dm3] 2L_5044118_SNP [dm6]	T	A	3.385e^-11	1.037e^-7	UPSTREAM CG31650 & 3 others INTRON CG31650 & 3 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	5826946	X_5826946_SNP [dm3] X_5932913_SNP [dm6]	A	G	3.385e^-11	1.037e^-7	INTRON CG3726
3R	19858295	3R_19858295_SNP [dm3] 3R_24032573_SNP [dm6]	G	T	3.447e^-11	1.037e^-7	SYNONYMOUS_CODING Ime4 UPSTREAM KrT95D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19858446	3R_19858446_SNP [dm3] 3R_24032724_SNP [dm6]	T	C	3.447e^-11	1.037e^-7	UPSTREAM KrT95D INTRON Ime4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	19858462	3R_19858462_SNP [dm3] 3R_24032740_SNP [dm6]	A	T	3.447e^-11	1.037e^-7	UPSTREAM KrT95D INTRON Ime4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	11402957	2L_11402957_SNP [dm3] 2L_11402957_SNP [dm6]	C	T	3.545e^-11	1.037e^-7	INTERGENIC	regulatory region REDfly_CRMs
2L	13708222	2L_13708222_SNP [dm3] 2L_13708222_SNP [dm6]	G	A	3.545e^-11	1.037e^-7	UTR_5_PRIME CG7311 INTRON CG31814
2L	8942283	2L_8942283_SNP [dm3] 2L_8942283_SNP [dm6]	A	G	3.545e^-11	1.037e^-7	UTR_3_PRIME CG9515 UPSTREAM CG9510
2L	8942580	2L_8942580_SNP [dm3] 2L_8942580_SNP [dm6]	G	A	3.545e^-11	1.037e^-7	SYNONYMOUS_CODING CG9515 UPSTREAM CG9510 DOWNSTREAM C1GalTA	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
2L	8942583	2L_8942583_SNP [dm3] 2L_8942583_SNP [dm6]	C	G	3.545e^-11	1.037e^-7	SYNONYMOUS_CODING CG9515 UPSTREAM CG9510 DOWNSTREAM C1GalTA	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
2L	8942892	2L_8942892_SNP [dm3] 2L_8942892_SNP [dm6]	G	T	3.545e^-11	1.037e^-7	SYNONYMOUS_CODING CG9515 UPSTREAM CG9510 DOWNSTREAM C1GalTA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
2L	8943253	2L_8943253_SNP [dm3] 2L_8943253_SNP [dm6]	T	A	3.545e^-11	1.037e^-7	UTR_5_PRIME CG9515 DOWNSTREAM C1GalTA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2R	11904567	2R_11904567_SNP [dm3] 2R_16017062_SNP [dm6]	G	T	3.545e^-11	1.037e^-7	NON_SYNONYMOUS_CODING CG8397 UPSTREAM CG8399
2R	11904773	2R_11904773_SNP [dm3] 2R_16017268_SNP [dm6]	T	C	3.545e^-11	1.037e^-7	UPSTREAM CG8399 & 1 other INTERGENIC
2R	11904778	2R_11904778_SNP [dm3] 2R_16017273_SNP [dm6]	C	A	3.545e^-11	1.037e^-7	UPSTREAM CG8399 & 1 other INTERGENIC
2R	11904782	2R_11904782_MNP [dm3] 2R_16017277_MNP [dm6]	CCT	TAC	3.545e^-11	1.037e^-7	UPSTREAM CG8399 & 1 other INTERGENIC
2R	11907572	2R_11907572_SNP [dm3] 2R_16020067_SNP [dm6]	T	C	3.545e^-11	1.037e^-7	INTRON CG8399
2R	11910181	2R_11910181_SNP [dm3] 2R_16022676_SNP [dm6]	T	C	3.545e^-11	1.037e^-7	NON_SYNONYMOUS_CODING CG8399
2R	14461652	2R_14461652_SNP [dm3] 2R_18574147_SNP [dm6]	C	A	3.545e^-11	1.037e^-7	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14461653	2R_14461653_INS [dm3] 2R_18574148_INS [dm6]	A	ACTGAA	3.545e^-11	1.037e^-7	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15906218	2R_15906218_SNP [dm3] 2R_20018713_SNP [dm6]	G	T	3.545e^-11	1.037e^-7	INTERGENIC
2R	16370052	2R_16370052_SNP [dm3] 2R_20482547_SNP [dm6]	C	A	3.545e^-11	1.037e^-7	INTERGENIC
2R	16372289	2R_16372289_SNP [dm3] 2R_20484784_SNP [dm6]	C	A	3.545e^-11	1.037e^-7	INTERGENIC
2R	16603291	2R_16603291_SNP [dm3] 2R_20715786_SNP [dm6]	C	T	3.545e^-11	1.037e^-7	INTRON dpr
2R	16789433	2R_16789433_INS [dm3] 2R_20901928_INS [dm6]	T	TACAT	3.545e^-11	1.037e^-7	INTRON otp
2R	16789446	2R_16789446_DEL [dm3] 2R_20901941_DEL [dm6]	CTTGGC	C	3.545e^-11	1.037e^-7	INTRON otp
2R	17125026	2R_17125026_SNP [dm3] 2R_21237521_SNP [dm6]	C	T	3.545e^-11	1.037e^-7	INTRON ASPP
2R	6030942	2R_6030942_SNP [dm3] 2R_10143437_SNP [dm6]	C	T	3.545e^-11	1.037e^-7	SYNONYMOUS_CODING CG18011
3L	10847693	3L_10847693_SNP [dm3] 3L_10854593_SNP [dm6]	C	T	3.545e^-11	1.037e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12372904	3L_12372904_SNP [dm3] 3L_12379804_SNP [dm6]	T	C	3.545e^-11	1.037e^-7	INTRON Ncc69	TF binding site BDTNP1_TFBS_twi
3L	12790971	3L_12790971_SNP [dm3] 3L_12797871_SNP [dm6]	G	A	3.545e^-11	1.037e^-7	INTRON Atg1
3L	12790972	3L_12790972_SNP [dm3] 3L_12797872_SNP [dm6]	A	T	3.545e^-11	1.037e^-7	INTRON Atg1
3L	519137	3L_519137_SNP [dm3] 3L_519137_SNP [dm6]	T	C	3.545e^-11	1.037e^-7	INTRON klar
3L	5968292	3L_5968292_SNP [dm3] 3L_5975192_SNP [dm6]	G	C	3.545e^-11	1.037e^-7	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9523782	3L_9523782_SNP [dm3] 3L_9530682_SNP [dm6]	G	A	3.545e^-11	1.037e^-7	SYNONYMOUS_CODING Or67a
3L	9524119	3L_9524119_SNP [dm3] 3L_9531019_SNP [dm6]	T	G	3.545e^-11	1.037e^-7	INTRON Or67a
3L	9525138	3L_9525138_SNP [dm3] 3L_9532038_SNP [dm6]	T	A	3.545e^-11	1.037e^-7	DOWNSTREAM Or67a INTERGENIC
3R	10443102	3R_10443102_SNP [dm3] 3R_14617380_SNP [dm6]	G	T	3.545e^-11	1.037e^-7	SYNONYMOUS_CODING CG14853	TF binding site mE1_TFBS_cad
3R	10443114	3R_10443114_SNP [dm3] 3R_14617392_SNP [dm6]	T	C	3.545e^-11	1.037e^-7	SYNONYMOUS_CODING CG14853	TF binding site mE1_TFBS_cad
3R	14028618	3R_14028618_SNP [dm3] 3R_18202896_SNP [dm6]	C	T	3.545e^-11	1.037e^-7	INTRON CG7985
3R	16181524	3R_16181524_SNP [dm3] 3R_20355802_SNP [dm6]	G	T	3.545e^-11	1.037e^-7	INTERGENIC
3R	22637819	3R_22637819_SNP [dm3] 3R_26812097_SNP [dm6]	G	A	3.545e^-11	1.037e^-7	INTRON Tl	TF binding site mE1_TFBS_HSA
X	14011657	X_14011657_SNP [dm3] X_14117624_SNP [dm6]	G	A	3.545e^-11	1.037e^-7	DOWNSTREAM tRNA:S7:12Eg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17501521	X_17501521_SNP [dm3] X_17607488_SNP [dm6]	A	G	3.545e^-11	1.037e^-7	DOWNSTREAM X11L INTERGENIC
X	19018414	X_19018414_SNP [dm3] X_19124381_SNP [dm6]	G	C	3.545e^-11	1.037e^-7	START_GAINED CG15882 UTR_5_PRIME CG15882 DOWNSTREAM tgy
X	20323899	X_20323899_SNP [dm3] X_20452872_SNP [dm6]	G	A	3.545e^-11	1.037e^-7	INTRON CG32506	TF binding site BDTNP1_TFBS_twi
X	20364603	X_20364603_SNP [dm3] X_20493576_SNP [dm6]	A	C	3.545e^-11	1.037e^-7	INTRON RhoGAP19D
X	3402749	X_3402749_SNP [dm3] X_3508716_SNP [dm6]	G	A	3.545e^-11	1.037e^-7	UTR_3_PRIME CG32791 INTRON CR44999	TF binding site BDTNP1_TFBS_da
X	5585175	X_5585175_SNP [dm3] X_5691142_SNP [dm6]	C	T	3.545e^-11	1.037e^-7	INTRON cv EXON CR45525	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	10043252	2L_10043252_SNP [dm3] 2L_10043252_SNP [dm6]	T	A	3.579e^-11	1.043e^-7	INTERGENIC
2L	12202298	2L_12202298_SNP [dm3] 2L_12202298_SNP [dm6]	A	C	3.581e^-11	1.043e^-7	INTRON aret
3R	20563205	3R_20563205_SNP [dm3] 3R_24737483_SNP [dm6]	G	A	3.594e^-11	1.043e^-7	INTRON tok
3R	20563216	3R_20563216_SNP [dm3] 3R_24737494_SNP [dm6]	T	C	3.594e^-11	1.043e^-7	INTRON tok
3R	20563219	3R_20563219_SNP [dm3] 3R_24737497_SNP [dm6]	C	T	3.594e^-11	1.043e^-7	INTRON tok
2L	1382752	2L_1382752_SNP [dm3] 2L_1382752_SNP [dm6]	T	A	3.600e^-11	1.043e^-7	INTRON lea EXON CR44897	TF binding site mE1_TFBS_cad
X	12641773	X_12641773_SNP [dm3] X_12747740_SNP [dm6]	A	T	3.624e^-11	1.049e^-7	UTR_3_PRIME CG4004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20129810	3R_20129810_SNP [dm3] 3R_24304088_SNP [dm6]	T	A	3.677e^-11	1.062e^-7	INTRON crb
2L	10043260	2L_10043260_DEL [dm3] 2L_10043260_DEL [dm6]	TCGCTATTTATTTAGTTTAT...	T	3.783e^-11	1.091e^-7	INTERGENIC
3L	15367671	3L_15367671_SNP [dm3] 3L_15374571_SNP [dm6]	C	T	3.882e^-11	1.118e^-7	INTERGENIC
2L	4565747	2L_4565747_SNP [dm3] 2L_4565747_SNP [dm6]	C	T	3.897e^-11	1.120e^-7	INTRON dp
X	6735080	X_6735080_DEL [dm3] X_6841047_DEL [dm6]	AA	A	3.986e^-11	1.144e^-7	INTRON CG14435
3R	10684281	3R_10684281_SNP [dm3] 3R_14858559_SNP [dm6]	T	C	3.990e^-11	1.144e^-7	INTRON btsz
3L	12300785	3L_12300785_SNP [dm3] 3L_12307685_SNP [dm6]	T	A	4.138e^-11	1.184e^-7	INTERGENIC
2R	3238056	2R_3238056_SNP [dm3] 2R_7350551_SNP [dm6]	G	T	4.171e^-11	1.192e^-7	INTRON Dscam1	TF binding site mE1_TFBS_inv
2R	2955423	2R_2955423_SNP [dm3] 2R_7067918_SNP [dm6]	T	C	4.292e^-11	1.224e^-7	UPSTREAM CG12836 INTERGENIC
3R	19468986	3R_19468986_SNP [dm3] 3R_23643264_SNP [dm6]	T	C	4.295e^-11	1.224e^-7	INTRON CG31145
2R	17647957	2R_17647957_SNP [dm3] 2R_21760452_SNP [dm6]	T	C	4.343e^-11	1.230e^-7	INTERGENIC
2L	5044083	2L_5044083_SNP [dm3] 2L_5044083_SNP [dm6]	A	T	4.384e^-11	1.230e^-7	UPSTREAM CG31650 & 3 others INTRON CG31650 & 3 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12037385	2R_12037385_SNP [dm3] 2R_16149880_SNP [dm6]	G	T	4.421e^-11	1.230e^-7	UPSTREAM lbk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
X	11706797	X_11706797_SNP [dm3] X_11812764_SNP [dm6]	C	T	4.489e^-11	1.230e^-7	INTRON CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
3L	6089820	3L_6089820_SNP [dm3] 3L_6096720_SNP [dm6]	T	G	4.520e^-11	1.230e^-7	UPSTREAM Ets65A DOWNSTREAM loj INTERGENIC
2R	17164518	2R_17164518_SNP [dm3] 2R_21277013_SNP [dm6]	C	G	4.523e^-11	1.230e^-7	INTRON Rgk3
3L	2642013	3L_2642013_SNP [dm3] 3L_2642013_SNP [dm6]	T	C	4.523e^-11	1.230e^-7	DOWNSTREAM CG14949 & 2 others INTERGENIC
3R	23259806	3R_23259806_SNP [dm3] 3R_27434084_SNP [dm6]	C	G	4.529e^-11	1.230e^-7	INTRON side	TF binding site BDTNP1_TFBS_twi
3L	14704427	3L_14704427_SNP [dm3] 3L_14711327_SNP [dm6]	C	T	4.631e^-11	1.230e^-7	INTRON ome
2R	19105040	2R_19105040_SNP [dm3] 2R_23217517_SNP [dm6]	A	G	4.632e^-11	1.230e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24035562	3R_24035562_SNP [dm3] 3R_28209840_SNP [dm6]	G	T	4.674e^-11	1.230e^-7	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4769157	3R_4769157_SNP [dm3] 3R_8943435_SNP [dm6]	T	A	4.674e^-11	1.230e^-7	DOWNSTREAM skap INTRON CG11964
3L	15367640	3L_15367640_SNP [dm3] 3L_15374540_SNP [dm6]	A	G	4.694e^-11	1.230e^-7	INTERGENIC
3L	15367849	3L_15367849_SNP [dm3] 3L_15374749_SNP [dm6]	G	A	4.714e^-11	1.230e^-7	INTERGENIC
2L	15422278	2L_15422278_SNP [dm3] 2L_15422278_SNP [dm6]	G	A	4.715e^-11	1.230e^-7	INTERGENIC
3R	18395707	3R_18395707_SNP [dm3] 3R_22569985_SNP [dm6]	G	T	4.720e^-11	1.230e^-7	UPSTREAM CG33110 INTERGENIC
3R	15249414	3R_15249414_SNP [dm3] 3R_19423692_SNP [dm6]	T	G	4.722e^-11	1.230e^-7	DOWNSTREAM CG3517 INTRON CG31221
X	12402479	X_12402479_SNP [dm3] X_12508446_SNP [dm6]	G	T	4.745e^-11	1.230e^-7	INTRON CG2556	TF binding site BDTNP1_TFBS_da
2R	15199951	2R_15199951_SNP [dm3] 2R_19312446_SNP [dm6]	G	A	4.756e^-11	1.230e^-7	UTR_3_PRIME Rgk1	TF binding site BDTNP1_TFBS_twi
3L	14199547	3L_14199547_SNP [dm3] 3L_14206447_SNP [dm6]	G	T	4.760e^-11	1.230e^-7	INTRON nuf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12576216	X_12576216_SNP [dm3] X_12682183_SNP [dm6]	T	C	4.767e^-11	1.230e^-7	UTR_3_PRIME Tis11
3R	18132554	3R_18132554_SNP [dm3] 3R_22306832_SNP [dm6]	G	A	4.779e^-11	1.230e^-7	INTERGENIC
2R	3022745	2R_3022745_DEL [dm3] 2R_7135240_DEL [dm6]	AA	A	4.789e^-11	1.230e^-7	DOWNSTREAM CR44443 INTERGENIC
2R	3022794	2R_3022794_SNP [dm3] 2R_7135289_SNP [dm6]	T	C	4.789e^-11	1.230e^-7	DOWNSTREAM CR44443 INTERGENIC
2R	3022809	2R_3022809_SNP [dm3] 2R_7135304_SNP [dm6]	C	G	4.789e^-11	1.230e^-7	DOWNSTREAM CR44443 INTERGENIC
2R	12543589	2R_12543589_SNP [dm3] 2R_16656084_SNP [dm6]	A	G	4.818e^-11	1.230e^-7	SYNONYMOUS_CODING Picot	TF binding site mE1_TFBS_cad
2R	12545677	2R_12545677_SNP [dm3] 2R_16658172_SNP [dm6]	G	T	4.818e^-11	1.230e^-7	INTRON Picot
2R	12546102	2R_12546102_SNP [dm3] 2R_16658597_SNP [dm6]	G	T	4.818e^-11	1.230e^-7	INTRON Picot
2R	12546895	2R_12546895_SNP [dm3] 2R_16659390_SNP [dm6]	T	C	4.818e^-11	1.230e^-7	UPSTREAM Picot INTRON Picot
2R	12546961	2R_12546961_SNP [dm3] 2R_16659456_SNP [dm6]	C	A	4.818e^-11	1.230e^-7	UPSTREAM Picot INTRON Picot
2R	12547460	2R_12547460_SNP [dm3] 2R_16659955_SNP [dm6]	G	A	4.818e^-11	1.230e^-7	UPSTREAM Picot INTRON Picot
2R	12547583	2R_12547583_SNP [dm3] 2R_16660078_SNP [dm6]	G	A	4.818e^-11	1.230e^-7	UPSTREAM Picot INTRON Picot
2R	12548163	2R_12548163_INS [dm3] 2R_16660658_INS [dm6]	T	TATTATAATTATAATTATAT...	4.818e^-11	1.230e^-7	INTRON Picot
2R	12548424	2R_12548424_SNP [dm3] 2R_16660919_SNP [dm6]	G	C	4.818e^-11	1.230e^-7	INTRON Picot
2R	17176684	2R_17176684_SNP [dm3] 2R_21289179_SNP [dm6]	G	T	4.818e^-11	1.230e^-7	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
2R	17177235	2R_17177235_SNP [dm3] 2R_21289730_SNP [dm6]	G	A	4.818e^-11	1.230e^-7	SYNONYMOUS_CODING CG10505
2R	17177582	2R_17177582_SNP [dm3] 2R_21290077_SNP [dm6]	C	A	4.818e^-11	1.230e^-7	DOWNSTREAM CG30392 INTRON CG10505
3L	9734141	3L_9734141_SNP [dm3] 3L_9741041_SNP [dm6]	A	T	4.826e^-11	1.230e^-7	UPSTREAM CR44348 INTRON CG42268
3L	14455575	3L_14455575_SNP [dm3] 3L_14462475_SNP [dm6]	T	A	4.826e^-11	1.230e^-7	INTRON bbg
2L	9351507	2L_9351507_SNP [dm3] 2L_9351507_SNP [dm6]	T	C	4.871e^-11	1.230e^-7	DOWNSTREAM CG13110 INTERGENIC
2R	17125023	2R_17125023_SNP [dm3] 2R_21237518_SNP [dm6]	A	T	4.871e^-11	1.230e^-7	INTRON ASPP
3L	15881377	3L_15881377_SNP [dm3] 3L_15888277_SNP [dm6]	T	G	4.871e^-11	1.230e^-7	INTRON pHCl
2L	11934280	2L_11934280_SNP [dm3] 2L_11934280_SNP [dm6]	G	T	4.891e^-11	1.230e^-7	UPSTREAM Or33a INTERGENIC
X	5663411	X_5663411_SNP [dm3] X_5769378_SNP [dm6]	T	C	4.901e^-11	1.230e^-7	INTRON CG42699 & 1 other
X	5663414	X_5663414_SNP [dm3] X_5769381_SNP [dm6]	T	C	4.901e^-11	1.230e^-7	INTRON CG42699 & 1 other
X	5663432	X_5663432_SNP [dm3] X_5769399_SNP [dm6]	A	C	4.901e^-11	1.230e^-7	INTRON CG42699 & 1 other
3L	21864386	3L_21864386_SNP [dm3] 3L_21871286_SNP [dm6]	A	T	4.914e^-11	1.230e^-7	INTRON mub
2R	11907740	2R_11907740_SNP [dm3] 2R_16020235_SNP [dm6]	A	G	4.932e^-11	1.230e^-7	INTRON CG8399
2R	11908622	2R_11908622_SNP [dm3] 2R_16021117_SNP [dm6]	T	C	4.932e^-11	1.230e^-7	INTRON CG8399
3L	5967564	3L_5967564_SNP [dm3] 3L_5974464_SNP [dm6]	C	T	4.932e^-11	1.230e^-7	INTRON CG10479	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9522859	3L_9522859_SNP [dm3] 3L_9529759_SNP [dm6]	C	T	4.932e^-11	1.230e^-7	INTRON Or67a
3R	19390451	3R_19390451_SNP [dm3] 3R_23564729_SNP [dm6]	C	T	4.932e^-11	1.230e^-7	INTRON beat-IV
3R	23796518	3R_23796518_SNP [dm3] 3R_27970796_SNP [dm6]	G	C	4.932e^-11	1.230e^-7	INTRON betaTub97EF
3R	23796788	3R_23796788_SNP [dm3] 3R_27971066_SNP [dm6]	T	C	4.932e^-11	1.230e^-7	INTRON betaTub97EF
X	20364662	X_20364662_SNP [dm3] X_20493635_SNP [dm6]	G	T	4.932e^-11	1.230e^-7	INTRON RhoGAP19D
2R	11904523	2R_11904523_SNP [dm3] 2R_16017018_SNP [dm6]	G	T	4.945e^-11	1.230e^-7	STOP_GAINED CG8397 UPSTREAM CG8399 DOWNSTREAM Rrp42	TF binding site mE1_TFBS_HSA
2R	11904525	2R_11904525_SNP [dm3] 2R_16017020_SNP [dm6]	A	C	4.945e^-11	1.230e^-7	NON_SYNONYMOUS_CODING CG8397 UPSTREAM CG8399 DOWNSTREAM Rrp42	TF binding site mE1_TFBS_HSA
2R	11904550	2R_11904550_SNP [dm3] 2R_16017045_SNP [dm6]	A	G	4.945e^-11	1.230e^-7	SYNONYMOUS_CODING CG8397 UPSTREAM CG8399 DOWNSTREAM Rrp42
2R	11904641	2R_11904641_SNP [dm3] 2R_16017136_SNP [dm6]	G	A	4.945e^-11	1.230e^-7	UTR_5_PRIME CG8397 UPSTREAM CG8399
2R	11904703	2R_11904703_SNP [dm3] 2R_16017198_SNP [dm6]	T	A	4.945e^-11	1.230e^-7	UPSTREAM CG8399 & 1 other INTERGENIC
2R	11904766	2R_11904766_SNP [dm3] 2R_16017261_SNP [dm6]	G	T	4.945e^-11	1.230e^-7	UPSTREAM CG8399 & 1 other INTERGENIC
2R	16367646	2R_16367646_SNP [dm3] 2R_20480141_SNP [dm6]	C	T	4.945e^-11	1.230e^-7	INTERGENIC
2R	16372402	2R_16372402_SNP [dm3] 2R_20484897_SNP [dm6]	T	C	4.945e^-11	1.230e^-7	INTERGENIC
X	12402505	X_12402505_MNP [dm3] X_12508472_MNP [dm6]	CTT	TGA	4.956e^-11	1.230e^-7	INTRON CG2556	TF binding site BDTNP1_TFBS_da
3L	11744768	3L_11744768_SNP [dm3] 3L_11751668_SNP [dm6]	G	A	4.980e^-11	1.230e^-7	NON_SYNONYMOUS_CODING Gr68a INTRON CG6024	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14420897	2R_14420897_SNP [dm3] 2R_18533392_SNP [dm6]	G	T	5.001e^-11	1.230e^-7	SYNONYMOUS_CODING CG10924	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	9708971	3L_9708971_SNP [dm3] 3L_9715871_SNP [dm6]	C	G	5.001e^-11	1.230e^-7	SYNONYMOUS_CODING vsg UPSTREAM snmRNA:838
2R	16367270	2R_16367270_SNP [dm3] 2R_20479765_SNP [dm6]	A	G	5.010e^-11	1.230e^-7	DOWNSTREAM CG12484 INTERGENIC
2R	16367455	2R_16367455_SNP [dm3] 2R_20479950_SNP [dm6]	G	T	5.010e^-11	1.230e^-7	DOWNSTREAM CG12484 INTERGENIC
2R	16367457	2R_16367457_SNP [dm3] 2R_20479952_SNP [dm6]	A	G	5.010e^-11	1.230e^-7	INTERGENIC
2R	16367459	2R_16367459_DEL [dm3] 2R_20479954_DEL [dm6]	AAACTCT	C	5.010e^-11	1.230e^-7	INTERGENIC
2R	16367467	2R_16367467_SNP [dm3] 2R_20479962_SNP [dm6]	A	T	5.010e^-11	1.230e^-7	INTERGENIC
3R	22613531	3R_22613531_SNP [dm3] 3R_26787809_SNP [dm6]	A	G	5.010e^-11	1.230e^-7	INTERGENIC
X	11670164	X_11670164_SNP [dm3] X_11776131_SNP [dm6]	C	G	5.010e^-11	1.230e^-7	INTRON dy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16660443	X_16660443_SNP [dm3] X_16766410_SNP [dm6]	G	C	5.010e^-11	1.230e^-7	INTRON if
3L	10147192	3L_10147192_SNP [dm3] 3L_10154092_SNP [dm6]	G	A	5.032e^-11	1.230e^-7	INTRON dpr10
2R	4919642	2R_4919642_SNP [dm3] 2R_9032137_SNP [dm6]	A	G	5.041e^-11	1.230e^-7	INTERGENIC
3L	7082342	3L_7082342_SNP [dm3] 3L_7089242_SNP [dm6]	G	A	5.041e^-11	1.230e^-7	UPSTREAM Cpr65Eb INTERGENIC
3R	9762600	3R_9762600_SNP [dm3] 3R_13936878_SNP [dm6]	A	T	5.048e^-11	1.230e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10671968	2L_10671968_SNP [dm3] 2L_10671968_SNP [dm6]	A	G	5.049e^-11	1.230e^-7	DOWNSTREAM CG31871 INTERGENIC
2R	16365828	2R_16365828_SNP [dm3] 2R_20478323_SNP [dm6]	G	A	5.049e^-11	1.230e^-7	UTR_3_PRIME CG12484
3L	12239952	3L_12239952_SNP [dm3] 3L_12246852_SNP [dm6]	T	C	5.074e^-11	1.230e^-7	UPSTREAM CR43991 INTRON app
3R	15637149	3R_15637149_SNP [dm3] 3R_19811427_SNP [dm6]	G	C	5.074e^-11	1.230e^-7	INTRON bnl
3R	15640454	3R_15640454_SNP [dm3] 3R_19814732_SNP [dm6]	G	C	5.074e^-11	1.230e^-7	INTRON bnl
3R	15640490	3R_15640490_SNP [dm3] 3R_19814768_SNP [dm6]	C	T	5.074e^-11	1.230e^-7	INTRON bnl
3R	4768008	3R_4768008_SNP [dm3] 3R_8942286_SNP [dm6]	G	T	5.074e^-11	1.230e^-7	UTR_3_PRIME skap DOWNSTREAM CG11964 INTRON skap
2L	8942271	2L_8942271_SNP [dm3] 2L_8942271_SNP [dm6]	G	A	5.100e^-11	1.230e^-7	UTR_3_PRIME CG9515 UPSTREAM CG9510
3L	19513229	3L_19513229_SNP [dm3] 3L_19520129_SNP [dm6]	C	T	5.100e^-11	1.230e^-7	SYNONYMOUS_CODING Cpr76Bb UPSTREAM Cpr76Bc	TF binding site mE1_TFBS_cad
3L	1999484	3L_1999484_SNP [dm3] 3L_1999484_SNP [dm6]	C	T	5.100e^-11	1.230e^-7	INTERGENIC
2L	10043254	2L_10043254_MNP [dm3] 2L_10043254_MNP [dm6]	TGCC	ACAA	5.163e^-11	1.230e^-7	INTERGENIC
2L	2857138	2L_2857138_SNP [dm3] 2L_2857138_SNP [dm6]	G	A	5.197e^-11	1.230e^-7	UPSTREAM CG2991 DOWNSTREAM RpS21 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
2L	9525443	2L_9525443_SNP [dm3] 2L_9525443_SNP [dm6]	G	A	5.197e^-11	1.230e^-7	INTRON Oatp30B	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	10608690	2R_10608690_SNP [dm3] 2R_14721185_SNP [dm6]	G	A	5.197e^-11	1.230e^-7	INTERGENIC
2R	14098879	2R_14098879_SNP [dm3] 2R_18211374_SNP [dm6]	C	G	5.197e^-11	1.230e^-7	DOWNSTREAM CR45147 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14553576	2R_14553576_SNP [dm3] 2R_18666071_SNP [dm6]	A	T	5.197e^-11	1.230e^-7	UPSTREAM CG33136 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
2R	14553579	2R_14553579_SNP [dm3] 2R_18666074_SNP [dm6]	G	A	5.197e^-11	1.230e^-7	UPSTREAM CG33136 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
2R	14553581	2R_14553581_SNP [dm3] 2R_18666076_SNP [dm6]	G	A	5.197e^-11	1.230e^-7	UPSTREAM CG33136 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
2R	14553585	2R_14553585_INS [dm3] 2R_18666080_INS [dm6]	G	TA	5.197e^-11	1.230e^-7	UPSTREAM CG33136 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
2R	14553590	2R_14553590_SNP [dm3] 2R_18666085_SNP [dm6]	T	A	5.197e^-11	1.230e^-7	UPSTREAM CG33136 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
2R	14553595	2R_14553595_SNP [dm3] 2R_18666090_SNP [dm6]	T	C	5.197e^-11	1.230e^-7	UPSTREAM CG33136 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
2R	14553596	2R_14553596_INS [dm3] 2R_18666091_INS [dm6]	A	AT	5.197e^-11	1.230e^-7	UPSTREAM CG33136 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
2R	16367305	2R_16367305_SNP [dm3] 2R_20479800_SNP [dm6]	A	G	5.197e^-11	1.230e^-7	DOWNSTREAM CG12484 INTERGENIC
3L	11012330	3L_11012330_SNP [dm3] 3L_11019230_SNP [dm6]	G	T	5.197e^-11	1.230e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	12691365	3L_12691365_SNP [dm3] 3L_12698265_SNP [dm6]	T	C	5.197e^-11	1.230e^-7	INTRON mirr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13126786	3L_13126786_SNP [dm3] 3L_13133686_SNP [dm6]	C	A	5.197e^-11	1.230e^-7	INTERGENIC
3L	3835731	3L_3835731_SNP [dm3] 3L_3835731_SNP [dm6]	C	A	5.197e^-11	1.230e^-7	INTRON enc	TF binding site mE1_TFBS_cad
3L	3843942	3L_3843942_SNP [dm3] 3L_3843942_SNP [dm6]	G	C	5.197e^-11	1.230e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	3843981	3L_3843981_SNP [dm3] 3L_3843981_SNP [dm6]	C	A	5.197e^-11	1.230e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	3843986	3L_3843986_SNP [dm3] 3L_3843986_SNP [dm6]	A	G	5.197e^-11	1.230e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	3844316	3L_3844316_SNP [dm3] 3L_3844316_SNP [dm6]	A	T	5.197e^-11	1.230e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
3L	3844381	3L_3844381_SNP [dm3] 3L_3844381_SNP [dm6]	G	A	5.197e^-11	1.230e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
3L	3844405	3L_3844405_SNP [dm3] 3L_3844405_SNP [dm6]	A	G	5.197e^-11	1.230e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
3L	3850364	3L_3850364_SNP [dm3] 3L_3850364_SNP [dm6]	G	T	5.197e^-11	1.230e^-7	INTRON Awh
3L	3850407	3L_3850407_INS [dm3] 3L_3850407_INS [dm6]	A	AA	5.197e^-11	1.230e^-7	INTRON Awh
3L	3850425	3L_3850425_SNP [dm3] 3L_3850425_SNP [dm6]	T	G	5.197e^-11	1.230e^-7	INTRON Awh
3L	3850655	3L_3850655_SNP [dm3] 3L_3850655_SNP [dm6]	G	A	5.197e^-11	1.230e^-7	INTRON Awh
3L	3850683	3L_3850683_SNP [dm3] 3L_3850683_SNP [dm6]	C	T	5.197e^-11	1.230e^-7	INTRON Awh
3L	3855698	3L_3855698_SNP [dm3] 3L_3855698_SNP [dm6]	G	C	5.197e^-11	1.230e^-7	INTRON Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	4149482	3L_4149482_SNP [dm3] 3L_4149482_SNP [dm6]	C	T	5.197e^-11	1.230e^-7	INTRON CG1299	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	4201466	3L_4201466_SNP [dm3] 3L_4201466_SNP [dm6]	G	C	5.197e^-11	1.230e^-7	SYNONYMOUS_CODING CG15005 INTRON CG43367	TF binding site mE1_TFBS_cad
3L	4343254	3L_4343254_SNP [dm3] 3L_4343254_SNP [dm6]	G	A	5.197e^-11	1.230e^-7	INTRON Cip4
3L	4459002	3L_4459002_SNP [dm3] 3L_4459002_SNP [dm6]	G	A	5.197e^-11	1.230e^-7	UPSTREAM CG11345 DOWNSTREAM CG15022 INTERGENIC
3L	4481474	3L_4481474_SNP [dm3] 3L_4481474_SNP [dm6]	A	T	5.197e^-11	1.230e^-7	UTR_3_PRIME CG7465	TF binding site mE1_TFBS_cad
3L	4618628	3L_4618628_SNP [dm3] 3L_4618628_SNP [dm6]	T	A	5.197e^-11	1.230e^-7	INTRON Src64B
3R	18855391	3R_18855391_SNP [dm3] 3R_23029669_SNP [dm6]	G	A	5.197e^-11	1.230e^-7	INTERGENIC	regulatory region REDfly_CRMs
3R	19343690	3R_19343690_SNP [dm3] 3R_23517968_SNP [dm6]	A	C	5.197e^-11	1.230e^-7	INTRON Irk2
3R	19431888	3R_19431888_SNP [dm3] 3R_23606166_SNP [dm6]	T	G	5.197e^-11	1.230e^-7	UTR_3_PRIME CG31145 UPSTREAM CG10184 DOWNSTREAM CG31145
3R	23582492	3R_23582492_SNP [dm3] 3R_27756770_SNP [dm6]	G	T	5.197e^-11	1.230e^-7	INTERGENIC
X	10734515	X_10734515_SNP [dm3] X_10840482_SNP [dm6]	T	G	5.197e^-11	1.230e^-7	DOWNSTREAM CG15210 INTRON sbr	TF binding site BDTNP1_TFBS_twi
X	10912505	X_10912505_SNP [dm3] X_11018472_SNP [dm6]	A	G	5.197e^-11	1.230e^-7	INTRON CG42339
X	18133906	X_18133906_SNP [dm3] X_18239873_SNP [dm6]	C	A	5.197e^-11	1.230e^-7	DOWNSTREAM upd2 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
X	2303786	X_2303786_SNP [dm3] X_2409753_SNP [dm6]	G	T	5.197e^-11	1.230e^-7	SYNONYMOUS_CODING CG12496	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	6735084	X_6735084_SNP [dm3] X_6841051_SNP [dm6]	T	A	5.197e^-11	1.230e^-7	INTRON CG14435
3R	27727930	3R_27727930_SNP [dm3] 3R_31902208_SNP [dm6]	T	A	5.274e^-11	1.247e^-7	INTRON heph	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19597726	3R_19597726_SNP [dm3] 3R_23772004_SNP [dm6]	T	A	5.363e^-11	1.266e^-7	SYNONYMOUS_CODING tst DOWNSTREAM CG10208	TF binding site mE1_TFBS_sens
X	471102	X_471102_SNP [dm3] X_577069_SNP [dm6]	T	C	5.406e^-11	1.275e^-7	UTR_3_PRIME Appl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11309253	3L_11309253_SNP [dm3] 3L_11316153_SNP [dm6]	C	T	5.613e^-11	1.322e^-7	EXON CR44361	TF binding site BDTNP1_TFBS_twi
X	17169058	X_17169058_DEL [dm3] X_17275025_DEL [dm6]	TACATCTGT	T	5.654e^-11	1.330e^-7	UPSTREAM f INTRON f
3L	12060324	3L_12060324_SNP [dm3] 3L_12067224_SNP [dm6]	A	C	6.423e^-11	1.509e^-7	DOWNSTREAM Sema-5c INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3R	15657748	3R_15657748_SNP [dm3] 3R_19832026_SNP [dm6]	T	G	6.568e^-11	1.541e^-7	INTRON bnl
3L	2514040	3L_2514040_SNP [dm3] 3L_2514040_SNP [dm6]	C	T	6.631e^-11	1.553e^-7	NON_SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17723438	3R_17723438_SNP [dm3] 3R_21897716_SNP [dm6]	T	A	6.693e^-11	1.553e^-7	INTRON CG6678
3R	18685882	3R_18685882_SNP [dm3] 3R_22860160_SNP [dm6]	C	T	6.747e^-11	1.553e^-7	INTERGENIC
X	11706052	X_11706052_SNP [dm3] X_11812019_SNP [dm6]	G	T	6.758e^-11	1.553e^-7	SYNONYMOUS_CODING CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	15180405	2R_15180405_SNP [dm3] 2R_19292900_SNP [dm6]	C	T	6.766e^-11	1.553e^-7	UPSTREAM mip40 INTRON Tab2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15897054	2R_15897054_DEL [dm3] 2R_20009549_DEL [dm6]	TGGCCAAAAAACTGCTTTGC...	T	6.774e^-11	1.553e^-7	INTERGENIC
2R	15898299	2R_15898299_SNP [dm3] 2R_20010794_SNP [dm6]	A	G	6.774e^-11	1.553e^-7	INTERGENIC
2R	4734505	2R_4734505_SNP [dm3] 2R_8847000_SNP [dm6]	C	T	6.802e^-11	1.553e^-7	INTRON sns	TF binding site mE1_TFBS_cad
2R	8297766	2R_8297766_SNP [dm3] 2R_12410261_SNP [dm6]	G	T	6.802e^-11	1.553e^-7	NON_SYNONYMOUS_CODING CG33626 UPSTREAM CG33627 DOWNSTREAM CG30050
2L	20992749	2L_20992749_SNP [dm3] 2L_20992749_SNP [dm6]	C	T	6.817e^-11	1.553e^-7	INTRON CG42238
2L	21075772	2L_21075772_SNP [dm3] 2L_21075772_SNP [dm6]	A	G	6.817e^-11	1.553e^-7	INTRON tadr
2L	21076144	2L_21076144_SNP [dm3] 2L_21076144_SNP [dm6]	C	T	6.817e^-11	1.553e^-7	INTRON tadr
2L	21076984	2L_21076984_DEL [dm3] 2L_21076984_DEL [dm6]	AA	A	6.817e^-11	1.553e^-7	INTRON tadr
2L	21077069	2L_21077069_DEL [dm3] 2L_21077069_DEL [dm6]	TTTGCGC	GATTA	6.817e^-11	1.553e^-7	INTRON tadr
2L	21086296	2L_21086296_SNP [dm3] 2L_21086296_SNP [dm6]	G	A	6.817e^-11	1.553e^-7	NON_SYNONYMOUS_CODING CG33509 DOWNSTREAM ppk13
2L	21091215	2L_21091215_SNP [dm3] 2L_21091215_SNP [dm6]	C	T	6.817e^-11	1.553e^-7	UPSTREAM CG14397 DOWNSTREAM CG9259 INTERGENIC
3R	24277750	3R_24277750_SNP [dm3] 3R_28452028_SNP [dm6]	T	A	6.852e^-11	1.553e^-7	INTRON beat-VI	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12546677	2R_12546677_SNP [dm3] 2R_16659172_SNP [dm6]	C	T	6.854e^-11	1.553e^-7	UPSTREAM Picot INTRON Picot
3L	7221445	3L_7221445_SNP [dm3] 3L_7228345_SNP [dm6]	G	T	6.857e^-11	1.553e^-7	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12610907	3L_12610907_SNP [dm3] 3L_12617807_SNP [dm6]	T	A	6.874e^-11	1.553e^-7	INTRON caup
2R	11904720	2R_11904720_SNP [dm3] 2R_16017215_SNP [dm6]	C	G	6.875e^-11	1.553e^-7	UPSTREAM CG8399 & 1 other INTERGENIC
3L	12497117	3L_12497117_SNP [dm3] 3L_12504017_SNP [dm6]	A	G	6.894e^-11	1.553e^-7	UPSTREAM vih & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	19345544	2R_19345544_SNP [dm3] 2R_23458021_SNP [dm6]	A	T	6.919e^-11	1.553e^-7	DOWNSTREAM skpF INTRON CG43795	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	15421099	X_15421099_SNP [dm3] X_15527066_SNP [dm6]	A	G	6.921e^-11	1.553e^-7	INTRON Ac13E
3R	19444015	3R_19444015_SNP [dm3] 3R_23618293_SNP [dm6]	A	C	6.925e^-11	1.553e^-7	INTRON CG31145	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8942859	2L_8942859_SNP [dm3] 2L_8942859_SNP [dm6]	C	G	6.926e^-11	1.553e^-7	NON_SYNONYMOUS_CODING CG9515 UPSTREAM CG9510 DOWNSTREAM C1GalTA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
2L	15028123	2L_15028123_SNP [dm3] 2L_15028123_SNP [dm6]	C	A	6.941e^-11	1.553e^-7	SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1	TF binding site mE1_TFBS_sens
2L	15028138	2L_15028138_SNP [dm3] 2L_15028138_SNP [dm6]	A	C	6.941e^-11	1.553e^-7	SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1	TF binding site mE1_TFBS_sens
3L	12497123	3L_12497123_SNP [dm3] 3L_12504023_SNP [dm6]	G	T	6.941e^-11	1.553e^-7	UPSTREAM vih & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	16612508	X_16612508_DEL [dm3] X_16718475_DEL [dm6]	GG	G	6.957e^-11	1.553e^-7	INTRON CG34325
2L	10807152	2L_10807152_SNP [dm3] 2L_10807152_SNP [dm6]	G	T	6.969e^-11	1.553e^-7	INTRON Nos	TF binding site mE1_TFBS_chinmo
3R	10283602	3R_10283602_SNP [dm3] 3R_14457880_SNP [dm6]	A	T	6.969e^-11	1.553e^-7	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	10283603	3R_10283603_SNP [dm3] 3R_14457881_SNP [dm6]	A	T	6.969e^-11	1.553e^-7	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	5663416	X_5663416_SNP [dm3] X_5769383_SNP [dm6]	T	A	6.976e^-11	1.553e^-7	INTRON CG42699 & 1 other
2R	16800715	2R_16800715_SNP [dm3] 2R_20913210_SNP [dm6]	A	G	6.991e^-11	1.553e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	2976374	2R_2976374_SNP [dm3] 2R_7088869_SNP [dm6]	A	G	6.991e^-11	1.553e^-7	INTRON esn
2R	6560245	2R_6560245_SNP [dm3] 2R_10672740_SNP [dm6]	A	G	6.992e^-11	1.553e^-7	UPSTREAM stan INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15367580	3L_15367580_SNP [dm3] 3L_15374480_SNP [dm6]	A	G	7.000e^-11	1.553e^-7	INTERGENIC
2R	16765126	2R_16765126_SNP [dm3] 2R_20877621_SNP [dm6]	C	A	7.017e^-11	1.553e^-7	NON_SYNONYMOUS_CODING Ipk1 SPLICE_SITE_REGION Ipk1
2R	15942291	2R_15942291_SNP [dm3] 2R_20054786_SNP [dm6]	T	C	7.026e^-11	1.553e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15942334	2R_15942334_SNP [dm3] 2R_20054829_SNP [dm6]	G	A	7.026e^-11	1.553e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7290403	3L_7290403_SNP [dm3] 3L_7297303_SNP [dm6]	C	G	7.028e^-11	1.553e^-7	INTRON unc-13-4A
X	12576204	X_12576204_SNP [dm3] X_12682171_SNP [dm6]	G	A	7.042e^-11	1.553e^-7	UTR_3_PRIME Tis11
2L	17842504	2L_17842504_SNP [dm3] 2L_17842504_SNP [dm6]	T	A	7.051e^-11	1.553e^-7	INTRON CadN2
3R	4752716	3R_4752716_SNP [dm3] 3R_8926994_SNP [dm6]	T	G	7.051e^-11	1.553e^-7	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12406300	2L_12406300_DEL [dm3] 2L_12406300_DEL [dm6]	CTAG	C	7.073e^-11	1.553e^-7	DOWNSTREAM vir-1 INTRON vir-1
2L	9596680	2L_9596680_SNP [dm3] 2L_9596680_SNP [dm6]	A	T	7.073e^-11	1.553e^-7	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3016641	2R_3016641_SNP [dm3] 2R_7129136_SNP [dm6]	G	T	7.074e^-11	1.553e^-7	NON_SYNONYMOUS_CODING Cyp9b1
2R	3017223	2R_3017223_SNP [dm3] 2R_7129718_SNP [dm6]	C	T	7.074e^-11	1.553e^-7	STOP_GAINED Cyp9b1 DOWNSTREAM Cyp9b2
2R	3017318	2R_3017318_SNP [dm3] 2R_7129813_SNP [dm6]	A	T	7.074e^-11	1.553e^-7	UPSTREAM Cyp9b1 DOWNSTREAM Cyp9b2 INTERGENIC
2R	3017426	2R_3017426_SNP [dm3] 2R_7129921_SNP [dm6]	T	C	7.074e^-11	1.553e^-7	UPSTREAM Cyp9b1 DOWNSTREAM Cyp9b2 INTERGENIC
2R	3017443	2R_3017443_SNP [dm3] 2R_7129938_SNP [dm6]	A	G	7.074e^-11	1.553e^-7	UPSTREAM Cyp9b1 DOWNSTREAM Cyp9b2 INTERGENIC
2R	3017454	2R_3017454_SNP [dm3] 2R_7129949_SNP [dm6]	G	C	7.074e^-11	1.553e^-7	UPSTREAM Cyp9b1 DOWNSTREAM Cyp9b2 INTERGENIC
2R	16021545	2R_16021545_SNP [dm3] 2R_20134040_SNP [dm6]	G	T	7.093e^-11	1.553e^-7	INTERGENIC
3L	6667741	3L_6667741_SNP [dm3] 3L_6674641_SNP [dm6]	T	C	7.115e^-11	1.553e^-7	INTERGENIC
2R	12548286	2R_12548286_SNP [dm3] 2R_16660781_SNP [dm6]	A	C	7.118e^-11	1.553e^-7	INTRON Picot
2R	17177873	2R_17177873_SNP [dm3] 2R_21290368_SNP [dm6]	C	G	7.118e^-11	1.553e^-7	UPSTREAM CG10505 DOWNSTREAM CG30392 INTERGENIC
2L	10000465	2L_10000465_SNP [dm3] 2L_10000465_SNP [dm6]	C	T	7.121e^-11	1.553e^-7	NON_SYNONYMOUS_CODING SoYb INTRON CG31875
2L	2741885	2L_2741885_SNP [dm3] 2L_2741885_SNP [dm6]	G	A	7.121e^-11	1.553e^-7	SYNONYMOUS_CODING Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9742213	3L_9742213_SNP [dm3] 3L_9749113_SNP [dm6]	T	C	7.128e^-11	1.553e^-7	INTRON CG42268	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22613350	3R_22613350_SNP [dm3] 3R_26787628_SNP [dm6]	T	G	7.137e^-11	1.553e^-7	INTERGENIC
3R	22613371	3R_22613371_SNP [dm3] 3R_26787649_SNP [dm6]	G	C	7.137e^-11	1.553e^-7	INTERGENIC
3R	15639171	3R_15639171_SNP [dm3] 3R_19813449_SNP [dm6]	T	G	7.173e^-11	1.555e^-7	INTRON bnl
3R	15639177	3R_15639177_SNP [dm3] 3R_19813455_SNP [dm6]	C	T	7.173e^-11	1.555e^-7	INTRON bnl
3L	4795474	3L_4795474_DEL [dm3] 3L_4795474_DEL [dm6]	TT	T	7.178e^-11	1.555e^-7	INTRON RhoGEF64C
2L	16458007	2L_16458007_SNP [dm3] 2L_16458007_SNP [dm6]	C	A	7.180e^-11	1.555e^-7	INTERGENIC	regulatory region REDfly_CRMs
3R	15641117	3R_15641117_SNP [dm3] 3R_19815395_SNP [dm6]	G	A	7.225e^-11	1.556e^-7	INTRON bnl
2R	16589998	2R_16589998_SNP [dm3] 2R_20702493_SNP [dm6]	T	C	7.235e^-11	1.556e^-7	INTRON dpr
2R	6050170	2R_6050170_SNP [dm3] 2R_10162665_SNP [dm6]	A	C	7.235e^-11	1.556e^-7	INTRON KCNQ
X	18224084	X_18224084_SNP [dm3] X_18330051_SNP [dm6]	G	A	7.235e^-11	1.556e^-7	INTRON CG6123
3L	4447979	3L_4447979_SNP [dm3] 3L_4447979_SNP [dm6]	G	T	7.269e^-11	1.556e^-7	UTR_3_PRIME CG12607
2R	17930908	2R_17930908_DEL [dm3] 2R_22043403_DEL [dm6]	GG	G	7.286e^-11	1.556e^-7	UPSTREAM PpD5 INTERGENIC
2L	8940212	2L_8940212_SNP [dm3] 2L_8940212_SNP [dm6]	T	C	7.342e^-11	1.556e^-7	DOWNSTREAM Tsp29Fb INTRON CG9510
2L	8940231	2L_8940231_SNP [dm3] 2L_8940231_SNP [dm6]	T	A	7.342e^-11	1.556e^-7	DOWNSTREAM Tsp29Fb INTRON CG9510
2L	8940238	2L_8940238_SNP [dm3] 2L_8940238_SNP [dm6]	T	C	7.342e^-11	1.556e^-7	DOWNSTREAM Tsp29Fb INTRON CG9510
2L	8940239	2L_8940239_SNP [dm3] 2L_8940239_SNP [dm6]	C	T	7.342e^-11	1.556e^-7	DOWNSTREAM Tsp29Fb INTRON CG9510
2L	9380842	2L_9380842_SNP [dm3] 2L_9380842_SNP [dm6]	G	A	7.342e^-11	1.556e^-7	SYNONYMOUS_CODING Shawl
2L	9380848	2L_9380848_SNP [dm3] 2L_9380848_SNP [dm6]	G	A	7.342e^-11	1.556e^-7	SYNONYMOUS_CODING Shawl
X	2293850	X_2293850_SNP [dm3] X_2399817_SNP [dm6]	C	A	7.342e^-11	1.556e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	16367421	2R_16367421_SNP [dm3] 2R_20479916_SNP [dm6]	T	A	7.345e^-11	1.556e^-7	DOWNSTREAM CG12484 INTERGENIC
2R	16367422	2R_16367422_SNP [dm3] 2R_20479917_SNP [dm6]	C	G	7.345e^-11	1.556e^-7	DOWNSTREAM CG12484 INTERGENIC
2R	16367423	2R_16367423_DEL [dm3] 2R_20479918_DEL [dm6]	ATTTTCGAA	A	7.345e^-11	1.556e^-7	DOWNSTREAM CG12484 INTERGENIC
2R	16367439	2R_16367439_DEL [dm3] 2R_20479934_DEL [dm6]	TGGGCCAGTT	C	7.345e^-11	1.556e^-7	DOWNSTREAM CG12484 INTERGENIC
2R	16367451	2R_16367451_SNP [dm3] 2R_20479946_SNP [dm6]	A	T	7.345e^-11	1.556e^-7	DOWNSTREAM CG12484 INTERGENIC
3R	15621829	3R_15621829_SNP [dm3] 3R_19796107_SNP [dm6]	T	A	7.345e^-11	1.556e^-7	INTRON bnl
X	12506679	X_12506679_SNP [dm3] X_12612646_SNP [dm6]	A	T	7.401e^-11	1.566e^-7	SYNONYMOUS_CODING CG2543 UPSTREAM CG1463 DOWNSTREAM CR45621 EXON CR45621	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	20129856	3R_20129856_SNP [dm3] 3R_24304134_SNP [dm6]	G	A	7.439e^-11	1.573e^-7	INTRON crb
3L	4183335	3L_4183335_SNP [dm3] 3L_4183335_SNP [dm6]	A	T	7.629e^-11	1.591e^-7	NON_SYNONYMOUS_CODING Teh3 INTRON CG18675 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5426349	3L_5426349_SNP [dm3] 3L_5433249_SNP [dm6]	T	C	7.629e^-11	1.591e^-7	INTRON CG34391
3L	5426369	3L_5426369_SNP [dm3] 3L_5433269_SNP [dm6]	T	A	7.629e^-11	1.591e^-7	INTRON CG34391
3L	5478267	3L_5478267_SNP [dm3] 3L_5485167_SNP [dm6]	G	T	7.629e^-11	1.591e^-7	INTERGENIC
3L	5498000	3L_5498000_SNP [dm3] 3L_5504900_SNP [dm6]	C	A	7.629e^-11	1.591e^-7	INTRON CG34342
3L	5502601	3L_5502601_SNP [dm3] 3L_5509501_SNP [dm6]	G	T	7.629e^-11	1.591e^-7	INTRON CG34342	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5507061	3L_5507061_SNP [dm3] 3L_5513961_SNP [dm6]	A	T	7.629e^-11	1.591e^-7	INTRON Lkr
3L	5592779	3L_5592779_SNP [dm3] 3L_5599679_SNP [dm6]	C	G	7.629e^-11	1.591e^-7	UTR_5_PRIME CG10591
3L	5611027	3L_5611027_SNP [dm3] 3L_5617927_SNP [dm6]	C	G	7.629e^-11	1.591e^-7	INTERGENIC
3L	5614497	3L_5614497_DEL [dm3] 3L_5621397_DEL [dm6]	TTTCATCTTTCCA...	T	7.629e^-11	1.591e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens
3L	5704080	3L_5704080_SNP [dm3] 3L_5710980_SNP [dm6]	A	T	7.629e^-11	1.591e^-7	INTRON sif
3L	5720092	3L_5720092_SNP [dm3] 3L_5726992_SNP [dm6]	T	A	7.629e^-11	1.591e^-7	INTRON sif
2L	2686790	2L_2686790_SNP [dm3] 2L_2686790_SNP [dm6]	T	A	7.788e^-11	1.622e^-7	INTRON CG31690
2L	1825920	2L_1825920_SNP [dm3] 2L_1825920_SNP [dm6]	T	G	8.449e^-11	1.758e^-7	INTRON CG31664
3L	23030934	3L_23030934_SNP [dm3] 3L_23037834_SNP [dm6]	C	A	8.922e^-11	1.854e^-7	INTRON nrm
2L	2681036	2L_2681036_SNP [dm3] 2L_2681036_SNP [dm6]	T	C	9.156e^-11	1.891e^-7	INTRON CG31690
2L	2834989	2L_2834989_SNP [dm3] 2L_2834989_SNP [dm6]	G	A	9.181e^-11	1.891e^-7	NON_SYNONYMOUS_CODING CG3119
2L	7236676	2L_7236676_SNP [dm3] 2L_7236676_SNP [dm6]	A	C	9.301e^-11	1.891e^-7	INTRON Ndae1
3L	6089760	3L_6089760_SNP [dm3] 3L_6096660_SNP [dm6]	A	G	9.498e^-11	1.891e^-7	UPSTREAM Ets65A DOWNSTREAM loj INTERGENIC
2L	2858597	2L_2858597_SNP [dm3] 2L_2858597_SNP [dm6]	A	T	9.575e^-11	1.891e^-7	INTRON CG2991	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	21804067	3L_21804067_SNP [dm3] 3L_21810967_SNP [dm6]	A	C	9.576e^-11	1.891e^-7	INTRON eg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17835306	2L_17835306_SNP [dm3] 2L_17835306_SNP [dm6]	C	A	9.679e^-11	1.891e^-7	INTRON CadN2
3R	12409434	3R_12409434_SNP [dm3] 3R_16583712_SNP [dm6]	C	A	9.694e^-11	1.891e^-7	UPSTREAM Scp2 INTERGENIC
2L	10664784	2L_10664784_SNP [dm3] 2L_10664784_SNP [dm6]	C	A	9.751e^-11	1.891e^-7	INTRON CG31871
3R	18112233	3R_18112233_DEL [dm3] 3R_22286511_DEL [dm6]	TAT	T	9.877e^-11	1.891e^-7	INTRON SKIP
2L	17771928	2L_17771928_SNP [dm3] 2L_17771928_SNP [dm6]	C	T	9.925e^-11	1.891e^-7	INTRON CadN	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17771930	2L_17771930_SNP [dm3] 2L_17771930_SNP [dm6]	A	C	9.925e^-11	1.891e^-7	INTRON CadN	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	5137659	X_5137659_SNP [dm3] X_5243626_SNP [dm6]	A	G	9.962e^-11	1.891e^-7	INTRON rg & 1 other
2L	21098057	2L_21098057_SNP [dm3] 2L_21098057_SNP [dm6]	T	G	9.994e^-11	1.891e^-7	INTRON CG12050 & 1 other
2L	15978655	2L_15978655_SNP [dm3] 2L_15978655_SNP [dm6]	C	A	1.003e^-10	1.891e^-7	UPSTREAM CG10839 INTERGENIC
2L	20258098	2L_20258098_DEL [dm3] 2L_20258098_DEL [dm6]	ATCCTC	A	1.003e^-10	1.891e^-7	UPSTREAM CG17571 INTERGENIC
2L	21118249	2L_21118249_SNP [dm3] 2L_21118249_SNP [dm6]	T	A	1.003e^-10	1.891e^-7	INTRON Nhe2
2L	3091814	2L_3091814_SNP [dm3] 2L_3091814_SNP [dm6]	G	T	1.003e^-10	1.891e^-7	UPSTREAM toc INTRON toc
2L	8941923	2L_8941923_SNP [dm3] 2L_8941923_SNP [dm6]	T	C	1.003e^-10	1.891e^-7	START_GAINED CG9510 UTR_5_PRIME CG9510 UPSTREAM CG9510 DOWNSTREAM CG9515	TF binding site mE1_TFBS_cad
2L	9525824	2L_9525824_SNP [dm3] 2L_9525824_SNP [dm6]	C	G	1.003e^-10	1.891e^-7	INTRON Oatp30B	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	9823560	2L_9823560_SNP [dm3] 2L_9823560_SNP [dm6]	G	C	1.003e^-10	1.891e^-7	INTRON nAChRalpha6
2R	11159850	2R_11159850_SNP [dm3] 2R_15272345_SNP [dm6]	G	T	1.003e^-10	1.891e^-7	INTRON Trpm
2R	11712736	2R_11712736_SNP [dm3] 2R_15825231_SNP [dm6]	T	C	1.003e^-10	1.891e^-7	INTRON tun	TF binding site mE1_TFBS_cad
2R	1399196	2R_1399196_SNP [dm3] 2R_5511691_SNP [dm6]	G	A	1.003e^-10	1.891e^-7	INTRON CG30438	transposable element FlyBase
2R	14369621	2R_14369621_SNP [dm3] 2R_18482116_SNP [dm6]	C	T	1.003e^-10	1.891e^-7	INTRON CG30116
2R	14567798	2R_14567798_SNP [dm3] 2R_18680293_SNP [dm6]	G	T	1.003e^-10	1.891e^-7	SYNONYMOUS_CODING CG44435 UTR_3_PRIME CG44434	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2R	15203040	2R_15203040_SNP [dm3] 2R_19315535_SNP [dm6]	C	T	1.003e^-10	1.891e^-7	INTRON Rgk1
2R	16374953	2R_16374953_INS [dm3] 2R_20487448_INS [dm6]	C	AT	1.003e^-10	1.891e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16375181	2R_16375181_SNP [dm3] 2R_20487676_SNP [dm6]	T	C	1.003e^-10	1.891e^-7	INTERGENIC
2R	16782904	2R_16782904_SNP [dm3] 2R_20895399_SNP [dm6]	C	T	1.003e^-10	1.891e^-7	INTRON otp
2R	17152248	2R_17152248_SNP [dm3] 2R_21264743_SNP [dm6]	T	C	1.003e^-10	1.891e^-7	DOWNSTREAM CG30391 INTRON Rgk3
2R	17152277	2R_17152277_SNP [dm3] 2R_21264772_SNP [dm6]	C	A	1.003e^-10	1.891e^-7	DOWNSTREAM CG30391 INTRON Rgk3
2R	17152373	2R_17152373_SNP [dm3] 2R_21264868_SNP [dm6]	G	A	1.003e^-10	1.891e^-7	UTR_3_PRIME CG30391 INTRON Rgk3
2R	17152411	2R_17152411_SNP [dm3] 2R_21264906_SNP [dm6]	G	T	1.003e^-10	1.891e^-7	UTR_3_PRIME CG30391 INTRON Rgk3
2R	17152474	2R_17152474_SNP [dm3] 2R_21264969_SNP [dm6]	T	C	1.003e^-10	1.891e^-7	UTR_3_PRIME CG30391 INTRON Rgk3
2R	19439518	2R_19439518_SNP [dm3] 2R_23551995_SNP [dm6]	C	A	1.003e^-10	1.891e^-7	UPSTREAM pita INTRON pita & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	10178292	3L_10178292_SNP [dm3] 3L_10185192_SNP [dm6]	T	A	1.003e^-10	1.891e^-7	INTRON dpr10
3L	10540403	3L_10540403_SNP [dm3] 3L_10547303_SNP [dm6]	G	A	1.003e^-10	1.891e^-7	INTRON A2bp1
3L	10540433	3L_10540433_SNP [dm3] 3L_10547333_SNP [dm6]	G	A	1.003e^-10	1.891e^-7	INTRON A2bp1
3L	10879118	3L_10879118_SNP [dm3] 3L_10886018_SNP [dm6]	A	G	1.003e^-10	1.891e^-7	UTR_5_PRIME CG6404	TF binding site BDTNP1_TFBS_dl
3L	10910492	3L_10910492_SNP [dm3] 3L_10917392_SNP [dm6]	A	G	1.003e^-10	1.891e^-7	INTERGENIC
3L	11412531	3L_11412531_SNP [dm3] 3L_11419431_SNP [dm6]	C	T	1.003e^-10	1.891e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13786398	3L_13786398_SNP [dm3] 3L_13793298_SNP [dm6]	T	G	1.003e^-10	1.891e^-7	INTRON bru-3
3L	13786399	3L_13786399_SNP [dm3] 3L_13793299_SNP [dm6]	G	A	1.003e^-10	1.891e^-7	INTRON bru-3
3L	13936938	3L_13936938_SNP [dm3] 3L_13943838_SNP [dm6]	T	A	1.003e^-10	1.891e^-7	INTRON CG32137
3L	13937057	3L_13937057_SNP [dm3] 3L_13943957_SNP [dm6]	A	T	1.003e^-10	1.891e^-7	INTRON CG32137
3L	14045358	3L_14045358_SNP [dm3] 3L_14052258_SNP [dm6]	G	A	1.003e^-10	1.891e^-7	UTR_3_PRIME CG6833 UPSTREAM CG43986 DOWNSTREAM CG13484	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	16333181	3L_16333181_SNP [dm3] 3L_16340081_SNP [dm6]	T	G	1.003e^-10	1.891e^-7	INTRON CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16754791	3L_16754791_SNP [dm3] 3L_16761691_SNP [dm6]	A	G	1.003e^-10	1.891e^-7	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	17245640	3L_17245640_SNP [dm3] 3L_17252540_SNP [dm6]	A	T	1.003e^-10	1.891e^-7	UTR_3_PRIME CG6497 DOWNSTREAM CG6497 INTRON CR43870
3L	17246946	3L_17246946_SNP [dm3] 3L_17253846_SNP [dm6]	C	T	1.003e^-10	1.891e^-7	UTR_5_PRIME CG6497 INTRON CR43870	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
3L	22814438	3L_22814438_SNP [dm3] 3L_22821338_SNP [dm6]	T	A	1.003e^-10	1.891e^-7	INTRON jim
3L	22814452	3L_22814452_SNP [dm3] 3L_22821352_SNP [dm6]	A	G	1.003e^-10	1.891e^-7	INTRON jim
3L	2504050	3L_2504050_SNP [dm3] 3L_2504050_SNP [dm6]	C	T	1.003e^-10	1.891e^-7	UPSTREAM CG16758 EXON CR45425	TF binding site BDTNP1_TFBS_twi
3L	4992706	3L_4992706_SNP [dm3] 3L_4992706_SNP [dm6]	A	T	1.003e^-10	1.891e^-7	INTRON Con
3L	5068314	3L_5068314_SNP [dm3] 3L_5068314_SNP [dm6]	T	G	1.003e^-10	1.891e^-7	INTRON Con
3L	5145219	3L_5145219_SNP [dm3] 3L_5152119_SNP [dm6]	G	A	1.003e^-10	1.891e^-7	UPSTREAM Srp54k INTRON Gen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7223269	3L_7223269_SNP [dm3] 3L_7230169_SNP [dm6]	G	A	1.003e^-10	1.891e^-7	INTERGENIC
3L	8189168	3L_8189168_SNP [dm3] 3L_8196068_SNP [dm6]	A	C	1.003e^-10	1.891e^-7	NON_SYNONYMOUS_CODING MED24 UTR_3_PRIME Ubc12 DOWNSTREAM Ubc12
3L	9535552	3L_9535552_SNP [dm3] 3L_9542452_SNP [dm6]	A	G	1.003e^-10	1.891e^-7	SYNONYMOUS_CODING Ir67a
3L	9535558	3L_9535558_SNP [dm3] 3L_9542458_SNP [dm6]	A	T	1.003e^-10	1.891e^-7	NON_SYNONYMOUS_CODING Ir67a
3R	15251167	3R_15251167_SNP [dm3] 3R_19425445_SNP [dm6]	G	T	1.003e^-10	1.891e^-7	UPSTREAM CG3517 INTRON CG31221
3R	15619090	3R_15619090_SNP [dm3] 3R_19793368_SNP [dm6]	A	G	1.003e^-10	1.891e^-7	DOWNSTREAM bnl INTERGENIC
3R	15619334	3R_15619334_SNP [dm3] 3R_19793612_SNP [dm6]	A	G	1.003e^-10	1.891e^-7	DOWNSTREAM bnl INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	15619375	3R_15619375_SNP [dm3] 3R_19793653_SNP [dm6]	C	A	1.003e^-10	1.891e^-7	DOWNSTREAM bnl INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	15622625	3R_15622625_SNP [dm3] 3R_19796903_SNP [dm6]	C	A	1.003e^-10	1.891e^-7	SYNONYMOUS_CODING bnl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
3R	5698724	3R_5698724_SNP [dm3] 3R_9873002_SNP [dm6]	G	A	1.003e^-10	1.891e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	13650593	X_13650593_SNP [dm3] X_13756560_SNP [dm6]	A	G	1.003e^-10	1.891e^-7	UPSTREAM Rtc1 DOWNSTREAM CR43833 INTRON CG32625	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	14105239	X_14105239_SNP [dm3] X_14211206_SNP [dm6]	G	A	1.003e^-10	1.891e^-7	UTR_5_PRIME l_1_G0469 INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	1722404	X_1722404_SNP [dm3] X_1828371_SNP [dm6]	A	G	1.003e^-10	1.891e^-7	INTRON CG42666
X	1728266	X_1728266_SNP [dm3] X_1834233_SNP [dm6]	A	G	1.003e^-10	1.891e^-7	INTRON CG42666
X	1728320	X_1728320_SNP [dm3] X_1834287_SNP [dm6]	T	A	1.003e^-10	1.891e^-7	INTRON CG42666
X	18131388	X_18131388_SNP [dm3] X_18237355_SNP [dm6]	C	A	1.003e^-10	1.891e^-7	INTERGENIC
X	19932644	X_19932644_SNP [dm3] X_20038611_SNP [dm6]	A	T	1.003e^-10	1.891e^-7	INTRON Dop2R
X	21007069	X_21007069_SNP [dm3] X_21136042_SNP [dm6]	A	T	1.003e^-10	1.891e^-7	NON_SYNONYMOUS_CODING CG34120
X	21981657	X_21981657_SNP [dm3] X_22579821_SNP [dm6]	C	A	1.003e^-10	1.891e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21981773	X_21981773_SNP [dm3] X_22579937_SNP [dm6]	G	A	1.003e^-10	1.891e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21981801	X_21981801_SNP [dm3] X_22579965_SNP [dm6]	T	A	1.003e^-10	1.891e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21981805	X_21981805_SNP [dm3] X_22579969_SNP [dm6]	C	T	1.003e^-10	1.891e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2852764	X_2852764_SNP [dm3] X_2958731_SNP [dm6]	G	A	1.003e^-10	1.891e^-7	INTRON kirre & 1 other
X	3386104	X_3386104_SNP [dm3] X_3492071_SNP [dm6]	A	G	1.003e^-10	1.891e^-7	SYNONYMOUS_CODING Gas8 INTRON CR44999	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	494101	X_494101_SNP [dm3] X_600068_SNP [dm6]	C	A	1.003e^-10	1.891e^-7	INTRON CG13366	TF binding site BDTNP1_TFBS_da
X	494151	X_494151_SNP [dm3] X_600118_SNP [dm6]	T	A	1.003e^-10	1.891e^-7	INTRON CG13366	TF binding site BDTNP1_TFBS_da
X	494376	X_494376_SNP [dm3] X_600343_SNP [dm6]	A	G	1.003e^-10	1.891e^-7	INTRON CG13366
X	494379	X_494379_SNP [dm3] X_600346_SNP [dm6]	G	C	1.003e^-10	1.891e^-7	INTRON CG13366
X	494433	X_494433_SNP [dm3] X_600400_SNP [dm6]	A	T	1.003e^-10	1.891e^-7	INTRON CG13366
X	497285	X_497285_SNP [dm3] X_603252_SNP [dm6]	T	G	1.003e^-10	1.891e^-7	INTRON CG13366	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	497340	X_497340_SNP [dm3] X_603307_SNP [dm6]	A	G	1.003e^-10	1.891e^-7	INTRON CG13366	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17840524	2L_17840524_SNP [dm3] 2L_17840524_SNP [dm6]	C	A	1.003e^-10	1.891e^-7	INTRON CadN2
3L	6974250	3L_6974250_SNP [dm3] 3L_6981150_SNP [dm6]	C	T	1.005e^-10	1.891e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	10000435	2L_10000435_SNP [dm3] 2L_10000435_SNP [dm6]	T	G	1.005e^-10	1.891e^-7	NON_SYNONYMOUS_CODING SoYb INTRON CG31875
2L	10000453	2L_10000453_SNP [dm3] 2L_10000453_SNP [dm6]	C	T	1.005e^-10	1.891e^-7	NON_SYNONYMOUS_CODING SoYb INTRON CG31875
2L	10000474	2L_10000474_SNP [dm3] 2L_10000474_SNP [dm6]	G	C	1.005e^-10	1.891e^-7	NON_SYNONYMOUS_CODING SoYb INTRON CG31875
2L	10000487	2L_10000487_SNP [dm3] 2L_10000487_SNP [dm6]	C	T	1.005e^-10	1.891e^-7	SYNONYMOUS_CODING SoYb INTRON CG31875
2R	10590170	2R_10590170_SNP [dm3] 2R_14702665_SNP [dm6]	C	T	1.012e^-10	1.903e^-7	INTRON mspo
2R	12622563	2R_12622563_SNP [dm3] 2R_16735058_SNP [dm6]	C	G	1.015e^-10	1.906e^-7	INTERGENIC
2L	16031714	2L_16031714_SNP [dm3] 2L_16031714_SNP [dm6]	A	G	1.019e^-10	1.911e^-7	INTRON beat-Ic	TF binding site BDTNP1_TFBS_Med
2R	14399740	2R_14399740_SNP [dm3] 2R_18512235_SNP [dm6]	A	C	1.029e^-10	1.927e^-7	INTERGENIC
2L	20401468	2L_20401468_SNP [dm3] 2L_20401468_SNP [dm6]	A	C	1.032e^-10	1.932e^-7	INTRON CG10947
3R	11380913	3R_11380913_SNP [dm3] 3R_15555191_SNP [dm6]	C	T	1.036e^-10	1.935e^-7	INTERGENIC
X	4868295	X_4868295_DEL [dm3] X_4974262_DEL [dm6]	TTTTGCTTGTCGGCT...	T	1.036e^-10	1.935e^-7	INTRON CR44833
2R	10190968	2R_10190968_SNP [dm3] 2R_14303463_SNP [dm6]	G	A	1.040e^-10	1.939e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2514868	3L_2514868_SNP [dm3] 3L_2514868_SNP [dm6]	G	T	1.042e^-10	1.939e^-7	INTRON Spn
2R	16984587	2R_16984587_SNP [dm3] 2R_21097082_SNP [dm6]	A	T	1.042e^-10	1.939e^-7	SYNONYMOUS_CODING CG4038 UPSTREAM CG34396 INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	496616	X_496616_DEL [dm3] X_602583_DEL [dm6]	TAAGT	T	1.043e^-10	1.939e^-7	INTRON CG13366

By genomic position
Variant impact
Gene name

Microbiota_OTU051 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results