DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.383e^-16)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

15523 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	1722404	X_1722404_SNP [dm3] X_1828371_SNP [dm6]	A	G	5.642e^-67	3.497e^-61	INTRON CG42666
X	1728266	X_1728266_SNP [dm3] X_1834233_SNP [dm6]	A	G	5.642e^-67	3.497e^-61	INTRON CG42666
X	1728320	X_1728320_SNP [dm3] X_1834287_SNP [dm6]	T	A	5.642e^-67	3.497e^-61	INTRON CG42666
X	4871346	X_4871346_SNP [dm3] X_4977313_SNP [dm6]	A	G	5.982e^-66	1.715e^-60	INTRON CR44833
X	4871289	X_4871289_SNP [dm3] X_4977256_SNP [dm6]	T	A	6.052e^-66	1.715e^-60	INTRON CR44833
3L	12461604	3L_12461604_SNP [dm3] 3L_12468504_SNP [dm6]	T	C	6.455e^-66	1.715e^-60	UPSTREAM eyg DOWNSTREAM CG32102 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	11545389	X_11545389_SNP [dm3] X_11651356_SNP [dm6]	G	A	6.455e^-66	1.715e^-60	INTRON Ptp10D
2L	16016654	2L_16016654_SNP [dm3] 2L_16016654_SNP [dm6]	G	A	6.436e^-65	1.197e^-59	INTRON beat-Ic
2L	16016728	2L_16016728_SNP [dm3] 2L_16016728_SNP [dm6]	G	C	6.436e^-65	1.197e^-59	INTRON beat-Ic
2L	16016903	2L_16016903_SNP [dm3] 2L_16016903_SNP [dm6]	C	T	6.436e^-65	1.197e^-59	INTRON beat-Ic
2L	8746577	2L_8746577_SNP [dm3] 2L_8746577_SNP [dm6]	C	T	6.678e^-64	1.129e^-58	INTERGENIC
2L	11149377	2L_11149377_SNP [dm3] 2L_11149377_SNP [dm6]	C	G	7.284e^-64	1.129e^-58	UPSTREAM Gyc32E INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	16014950	2L_16014950_SNP [dm3] 2L_16014950_SNP [dm6]	A	T	7.235e^-63	1.035e^-57	INTRON beat-Ic
X	14511796	X_14511796_DEL [dm3] X_14617763_DEL [dm6]	GG	G	8.012e^-49	1.064e^-43	INTRON NetA
2L	3371541	2L_3371541_SNP [dm3] 2L_3371541_SNP [dm6]	G	C	4.785e^-34	5.932e^-29	UPSTREAM CG34394 INTRON CG34394
2R	17562158	2R_17562158_SNP [dm3] 2R_21674653_SNP [dm6]	G	A	5.032e^-25	5.849e^-20	UPSTREAM CG30263 INTERGENIC
2R	17120357	2R_17120357_SNP [dm3] 2R_21232852_SNP [dm6]	G	A	4.711e^-23	5.154e^-18	INTRON ASPP
3L	18024259	3L_18024259_SNP [dm3] 3L_18031159_SNP [dm6]	A	T	9.921e^-23	1.021e^-17	INTRON Eip75B
2R	17120384	2R_17120384_SNP [dm3] 2R_21232879_SNP [dm6]	C	T	1.043e^-22	1.021e^-17	INTRON ASPP
2L	19787140	2L_19787140_SNP [dm3] 2L_19787140_SNP [dm6]	T	C	1.308e^-21	1.216e^-16	INTRON CdGAPr
2L	1555939	2L_1555939_SNP [dm3] 2L_1555939_SNP [dm6]	T	C	6.539e^-20	5.287e^-15	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1555942	2L_1555942_SNP [dm3] 2L_1555942_SNP [dm6]	C	T	6.539e^-20	5.287e^-15	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1555943	2L_1555943_SNP [dm3] 2L_1555943_SNP [dm6]	T	G	6.539e^-20	5.287e^-15	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1555933	2L_1555933_SNP [dm3] 2L_1555933_SNP [dm6]	T	A	1.304e^-19	9.325e^-15	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1555502	2L_1555502_SNP [dm3] 2L_1555502_SNP [dm6]	G	T	1.304e^-19	9.325e^-15	UTR_5_PRIME haf INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1555613	2L_1555613_SNP [dm3] 2L_1555613_SNP [dm6]	G	A	1.304e^-19	9.325e^-15	UTR_5_PRIME haf INTRON haf	TF binding site mE1_TFBS_HSA
2L	1555462	2L_1555462_SNP [dm3] 2L_1555462_SNP [dm6]	T	C	1.391e^-19	9.581e^-15	UTR_5_PRIME haf INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16265190	2R_16265190_DEL [dm3] 2R_20377685_DEL [dm6]	CATTCGGCCACATTTT...	C	3.875e^-18	2.559e^-13	INTERGENIC
X	1722332	X_1722332_SNP [dm3] X_1828299_SNP [dm6]	C	T	3.990e^-18	2.559e^-13	INTRON CG42666
3L	10882381	3L_10882381_DEL [dm3] 3L_10889281_DEL [dm6]	TAAATGCATTTAATTAATAC...	T	2.007e^-17	1.244e^-12	UPSTREAM Cpr67Fa1 INTERGENIC
3L	11455727	3L_11455727_SNP [dm3] 3L_11462627_SNP [dm6]	T	G	3.563e^-17	2.068e^-12	DOWNSTREAM CG6140 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	22418175	3L_22418175_SNP [dm3] 3L_22425075_SNP [dm6]	C	T	4.114e^-17	2.068e^-12	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	22419222	3L_22419222_SNP [dm3] 3L_22426122_SNP [dm6]	C	T	4.114e^-17	2.068e^-12	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	22420865	3L_22420865_SNP [dm3] 3L_22427765_SNP [dm6]	T	C	4.114e^-17	2.068e^-12	INTERGENIC
3L	22422471	3L_22422471_SNP [dm3] 3L_22429371_SNP [dm6]	A	G	4.114e^-17	2.068e^-12	INTERGENIC
3L	22423669	3L_22423669_SNP [dm3] 3L_22430569_SNP [dm6]	C	T	4.114e^-17	2.068e^-12	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	22433923	3L_22433923_SNP [dm3] 3L_22440823_SNP [dm6]	G	A	4.114e^-17	2.068e^-12	INTERGENIC
3R	22406205	3R_22406205_SNP [dm3] 3R_26580483_SNP [dm6]	G	C	4.421e^-17	2.127e^-12	NON_SYNONYMOUS_CODING scrib	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19320591	2R_19320591_SNP [dm3] 2R_23433068_SNP [dm6]	G	T	4.690e^-17	2.127e^-12	INTRON CG9815
2R	19320716	2R_19320716_SNP [dm3] 2R_23433193_SNP [dm6]	C	A	4.690e^-17	2.127e^-12	INTRON CG9815
3L	6620819	3L_6620819_SNP [dm3] 3L_6627719_SNP [dm6]	A	G	4.690e^-17	2.127e^-12	INTRON GluRIA
3L	10451316	3L_10451316_SNP [dm3] 3L_10458216_SNP [dm6]	C	A	7.645e^-17	3.231e^-12	DOWNSTREAM Gem3 INTERGENIC
3L	10451584	3L_10451584_SNP [dm3] 3L_10458484_SNP [dm6]	C	T	7.645e^-17	3.231e^-12	DOWNSTREAM Gem3 INTERGENIC
3L	22426728	3L_22426728_SNP [dm3] 3L_22433628_SNP [dm6]	G	C	7.645e^-17	3.231e^-12	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	15976595	2L_15976595_SNP [dm3] 2L_15976595_SNP [dm6]	A	C	1.209e^-16	4.995e^-12	INTERGENIC
3R	9284908	3R_9284908_SNP [dm3] 3R_13459186_SNP [dm6]	T	C	1.617e^-16	6.537e^-12	INTRON CR17025 & 1 other
3L	6620647	3L_6620647_INS [dm3] 3L_6627547_INS [dm6]	C	CCTTTATTGATT...	1.685e^-16	6.666e^-12	INTRON GluRIA
2L	2799474	2L_2799474_SNP [dm3] 2L_2799474_SNP [dm6]	C	A	1.825e^-16	7.070e^-12	INTRON Syt1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9359874	2R_9359874_SNP [dm3] 2R_13472369_SNP [dm6]	C	A	2.323e^-16	8.817e^-12	INTRON arr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17174527	2R_17174527_SNP [dm3] 2R_21287022_SNP [dm6]	A	C	2.700e^-16	1.004e^-11	SPLICE_SITE_REGION CG10505 INTRON CG10505	TF binding site mE1_TFBS_chinmo
2L	9375393	2L_9375393_SNP [dm3] 2L_9375393_SNP [dm6]	C	A	2.838e^-16	1.035e^-11	INTRON Shawl
2R	17169920	2R_17169920_SNP [dm3] 2R_21282415_SNP [dm6]	T	A	4.851e^-16	1.555e^-11	UTR_5_PRIME MFS16 UPSTREAM CG34203 & 1 other INTRON MFS16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	17170591	2R_17170591_SNP [dm3] 2R_21283086_SNP [dm6]	C	T	4.851e^-16	1.555e^-11	NON_SYNONYMOUS_CODING MFS16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17171121	2R_17171121_SNP [dm3] 2R_21283616_SNP [dm6]	C	T	4.851e^-16	1.555e^-11	SYNONYMOUS_CODING MFS16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	17171193	2R_17171193_SNP [dm3] 2R_21283688_SNP [dm6]	G	C	4.851e^-16	1.555e^-11	SYNONYMOUS_CODING MFS16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	17171310	2R_17171310_SNP [dm3] 2R_21283805_SNP [dm6]	C	T	4.851e^-16	1.555e^-11	SYNONYMOUS_CODING MFS16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	17171812	2R_17171812_DEL [dm3] 2R_21284307_DEL [dm6]	TT	T	4.851e^-16	1.555e^-11	DOWNSTREAM CG10505 INTRON MFS16	TF binding site mE1_TFBS_cad
2R	17171864	2R_17171864_INS [dm3] 2R_21284359_INS [dm6]	A	AC	4.851e^-16	1.555e^-11	DOWNSTREAM CG10505 INTRON MFS16	TF binding site mE1_TFBS_cad
2R	17655697	2R_17655697_SNP [dm3] 2R_21768192_SNP [dm6]	C	A	7.770e^-16	2.449e^-11	NON_SYNONYMOUS_CODING CG30395
X	14555006	X_14555006_SNP [dm3] X_14660973_SNP [dm6]	T	G	7.959e^-16	2.452e^-11	INTERGENIC
2R	18371807	2R_18371807_SNP [dm3] 2R_22484302_SNP [dm6]	A	G	8.043e^-16	2.452e^-11	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16768491	3R_16768491_SNP [dm3] 3R_20942769_SNP [dm6]	A	C	8.253e^-16	2.475e^-11	INTRON CG31191
3L	13941731	3L_13941731_SNP [dm3] 3L_13948631_SNP [dm6]	C	A	8.815e^-16	2.602e^-11	INTRON CG32137
3L	5669961	3L_5669961_SNP [dm3] 3L_5676861_SNP [dm6]	G	A	9.493e^-16	2.758e^-11	SYNONYMOUS_CODING sif	TF binding site mE1_TFBS_inv
2L	7202945	2L_7202945_SNP [dm3] 2L_7202945_SNP [dm6]	T	C	1.046e^-15	2.994e^-11	INTRON CG4502
2R	20094900	2R_20094900_SNP [dm3] 2R_24207377_SNP [dm6]	T	G	1.384e^-15	3.901e^-11	UPSTREAM CG11406 INTRON CG11406
X	16612657	X_16612657_INS [dm3] X_16718624_INS [dm6]	T	TG	1.616e^-15	4.486e^-11	INTRON CG34325
3L	12461601	3L_12461601_SNP [dm3] 3L_12468501_SNP [dm6]	G	A	1.828e^-15	4.964e^-11	UPSTREAM eyg DOWNSTREAM CG32102 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	10573862	2R_10573862_SNP [dm3] 2R_14686357_SNP [dm6]	G	T	1.842e^-15	4.964e^-11	INTRON mspo
2R	15955505	2R_15955505_SNP [dm3] 2R_20068000_SNP [dm6]	G	T	1.985e^-15	5.199e^-11	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12777145	X_12777145_SNP [dm3] X_12883112_SNP [dm6]	G	A	1.985e^-15	5.199e^-11	INTRON Pde9
X	12675958	X_12675958_SNP [dm3] X_12781925_SNP [dm6]	A	T	2.934e^-15	7.576e^-11	INTRON CG32647
2L	14181131	2L_14181131_DEL [dm3] 2L_14181131_DEL [dm6]	CAAA	G	5.151e^-15	1.312e^-10	UPSTREAM CG43333 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	21264295	3R_21264295_SNP [dm3] 3R_25438573_SNP [dm6]	A	T	5.566e^-15	1.399e^-10	INTRON Fur1
X	12777143	X_12777143_SNP [dm3] X_12883110_SNP [dm6]	A	G	5.807e^-15	1.440e^-10	INTRON Pde9
3R	21248390	3R_21248390_SNP [dm3] 3R_25422668_SNP [dm6]	C	T	6.067e^-15	1.484e^-10	INTRON Fur1
2L	20526605	2L_20526605_SNP [dm3] 2L_20526605_SNP [dm6]	T	C	6.822e^-15	1.647e^-10	INTERGENIC
3L	1793613	3L_1793613_DEL [dm3] 3L_1793613_DEL [dm6]	TT	T	7.675e^-15	1.830e^-10	INTRON alpha-Spec & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17707431	3L_17707431_INS [dm3] 3L_17714331_INS [dm6]	C	CCG	9.602e^-15	2.232e^-10	INTRON Ccn	TF binding site BDTNP1_TFBS_twi
3L	17707434	3L_17707434_SNP [dm3] 3L_17714334_SNP [dm6]	C	A	9.602e^-15	2.232e^-10	INTRON Ccn	TF binding site BDTNP1_TFBS_twi
3R	16911756	3R_16911756_SNP [dm3] 3R_21086034_SNP [dm6]	T	A	1.085e^-14	2.491e^-10	INTRON RhoGAP93B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	23007870	3R_23007870_SNP [dm3] 3R_27182148_SNP [dm6]	G	T	1.138e^-14	2.580e^-10	INTRON Ser
X	12777079	X_12777079_SNP [dm3] X_12883046_SNP [dm6]	C	T	1.566e^-14	3.508e^-10	INTRON Pde9
3L	22286200	3L_22286200_SNP [dm3] 3L_22293100_SNP [dm6]	A	G	2.150e^-14	4.760e^-10	UTR_3_PRIME Ten-m DOWNSTREAM Aats-ile & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	4871494	X_4871494_SNP [dm3] X_4977461_SNP [dm6]	A	G	2.632e^-14	5.690e^-10	INTRON CR44833
X	4872017	X_4872017_SNP [dm3] X_4977984_SNP [dm6]	A	T	2.632e^-14	5.690e^-10	INTRON CR44833
2L	11149268	2L_11149268_SNP [dm3] 2L_11149268_SNP [dm6]	A	G	4.471e^-14	9.557e^-10	UPSTREAM Gyc32E INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	17171840	2R_17171840_SNP [dm3] 2R_21284335_SNP [dm6]	G	A	1.016e^-13	2.146e^-9	DOWNSTREAM CG10505 INTRON MFS16	TF binding site mE1_TFBS_cad
2L	16374817	2L_16374817_SNP [dm3] 2L_16374817_SNP [dm6]	A	G	1.359e^-13	2.216e^-9	INTERGENIC
2R	12624923	2R_12624923_SNP [dm3] 2R_16737418_SNP [dm6]	C	A	1.359e^-13	2.216e^-9	NON_SYNONYMOUS_CODING CG43104 UPSTREAM CR44464	TF binding site mE1_TFBS_HSA
2R	12625207	2R_12625207_SNP [dm3] 2R_16737702_SNP [dm6]	A	G	1.359e^-13	2.216e^-9	UPSTREAM CR44464 INTRON CG43104	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13864812	2R_13864812_SNP [dm3] 2R_17977307_SNP [dm6]	G	A	1.359e^-13	2.216e^-9	INTRON dpr13
3L	10032335	3L_10032335_SNP [dm3] 3L_10039235_SNP [dm6]	G	A	1.359e^-13	2.216e^-9	INTRON dpr6
3L	11948913	3L_11948913_SNP [dm3] 3L_11955813_SNP [dm6]	T	C	1.359e^-13	2.216e^-9	SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
3L	13479863	3L_13479863_SNP [dm3] 3L_13486763_SNP [dm6]	T	C	1.359e^-13	2.216e^-9	UPSTREAM Tgi & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13484368	3L_13484368_SNP [dm3] 3L_13491268_SNP [dm6]	G	C	1.359e^-13	2.216e^-9	INTRON Tgi
3L	17627055	3L_17627055_SNP [dm3] 3L_17633955_SNP [dm6]	G	T	1.359e^-13	2.216e^-9	UPSTREAM CR44567 INTRON CG7497
3L	5946442	3L_5946442_SNP [dm3] 3L_5953342_SNP [dm6]	C	G	1.359e^-13	2.216e^-9	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9535907	3L_9535907_SNP [dm3] 3L_9542807_SNP [dm6]	G	T	1.359e^-13	2.216e^-9	NON_SYNONYMOUS_CODING Ir67a
3L	9670906	3L_9670906_SNP [dm3] 3L_9677806_SNP [dm6]	T	C	1.359e^-13	2.216e^-9	INTRON fry	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	9748159	3L_9748159_SNP [dm3] 3L_9755059_SNP [dm6]	T	C	1.359e^-13	2.216e^-9	INTRON CG42268
3R	13590983	3R_13590983_SNP [dm3] 3R_17765261_SNP [dm6]	T	C	1.359e^-13	2.216e^-9	INTERGENIC
3R	18117835	3R_18117835_SNP [dm3] 3R_22292113_SNP [dm6]	G	A	1.359e^-13	2.216e^-9	UPSTREAM mir-1010 INTRON SKIP
3R	19339165	3R_19339165_SNP [dm3] 3R_23513443_SNP [dm6]	A	G	1.359e^-13	2.216e^-9	DOWNSTREAM Irk2 INTERGENIC
X	17167397	X_17167397_SNP [dm3] X_17273364_SNP [dm6]	T	C	1.359e^-13	2.216e^-9	INTRON f	TF binding site mE1_TFBS_cad
X	17410268	X_17410268_SNP [dm3] X_17516235_SNP [dm6]	C	A	1.359e^-13	2.216e^-9	INTRON CG43658
X	21928007	X_21928007_SNP [dm3] X_22526171_SNP [dm6]	C	T	1.359e^-13	2.216e^-9	INTRON CG17600
X	21928562	X_21928562_SNP [dm3] X_22526726_SNP [dm6]	G	C	1.359e^-13	2.216e^-9	INTRON CG17600
X	4676192	X_4676192_SNP [dm3] X_4782159_SNP [dm6]	A	G	1.359e^-13	2.216e^-9	DOWNSTREAM CG15471 INTERGENIC
X	4676388	X_4676388_SNP [dm3] X_4782355_SNP [dm6]	A	G	1.359e^-13	2.216e^-9	NON_SYNONYMOUS_CODING CG15471
X	4676521	X_4676521_SNP [dm3] X_4782488_SNP [dm6]	G	T	1.359e^-13	2.216e^-9	NON_SYNONYMOUS_CODING CG15471
X	4676605	X_4676605_SNP [dm3] X_4782572_SNP [dm6]	G	A	1.359e^-13	2.216e^-9	SYNONYMOUS_CODING CG15471
X	4676641	X_4676641_SNP [dm3] X_4782608_SNP [dm6]	G	A	1.359e^-13	2.216e^-9	SYNONYMOUS_CODING CG15471
X	6489165	X_6489165_SNP [dm3] X_6595132_SNP [dm6]	C	T	1.359e^-13	2.216e^-9	SYNONYMOUS_CODING Pat1	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	6212755	3L_6212755_SNP [dm3] 3L_6219655_SNP [dm6]	C	T	1.875e^-13	2.455e^-9	UPSTREAM pncr008:3L INTERGENIC	TF binding site mE1_TFBS_HSA
2R	2975474	2R_2975474_SNP [dm3] 2R_7087969_SNP [dm6]	C	G	2.107e^-13	2.455e^-9	INTRON esn
2R	2975562	2R_2975562_SNP [dm3] 2R_7088057_SNP [dm6]	C	A	2.107e^-13	2.455e^-9	INTRON esn
2R	2998051	2R_2998051_SNP [dm3] 2R_7110546_SNP [dm6]	G	T	2.107e^-13	2.455e^-9	INTRON esn
2R	2999896	2R_2999896_SNP [dm3] 2R_7112391_SNP [dm6]	G	T	2.107e^-13	2.455e^-9	INTRON esn	TF binding site mE1_TFBS_chinmo
2R	16945082	2R_16945082_SNP [dm3] 2R_21057577_SNP [dm6]	T	G	2.108e^-13	2.455e^-9	UPSTREAM cpa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16949234	2R_16949234_SNP [dm3] 2R_21061729_SNP [dm6]	T	A	2.108e^-13	2.455e^-9	NON_SYNONYMOUS_CODING Cht8 DOWNSTREAM mRpL54
2R	16949797	2R_16949797_SNP [dm3] 2R_21062292_SNP [dm6]	C	T	2.108e^-13	2.455e^-9	DOWNSTREAM mRpL54 & 1 other INTRON Cht8	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16950373	2R_16950373_SNP [dm3] 2R_21062868_SNP [dm6]	C	T	2.108e^-13	2.455e^-9	SYNONYMOUS_CODING Cht8 DOWNSTREAM Cht12	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16950799	2R_16950799_SNP [dm3] 2R_21063294_SNP [dm6]	C	T	2.108e^-13	2.455e^-9	NON_SYNONYMOUS_CODING Cht12 DOWNSTREAM Cht8
2R	16950869	2R_16950869_SNP [dm3] 2R_21063364_SNP [dm6]	C	T	2.108e^-13	2.455e^-9	SYNONYMOUS_CODING Cht12 DOWNSTREAM Cht8
2R	16951151	2R_16951151_SNP [dm3] 2R_21063646_SNP [dm6]	C	A	2.108e^-13	2.455e^-9	SYNONYMOUS_CODING Cht12 DOWNSTREAM Cht8	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16951298	2R_16951298_SNP [dm3] 2R_21063793_SNP [dm6]	G	C	2.108e^-13	2.455e^-9	SYNONYMOUS_CODING Cht12 DOWNSTREAM Cht8	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16952877	2R_16952877_SNP [dm3] 2R_21065372_SNP [dm6]	T	A	2.108e^-13	2.455e^-9	UPSTREAM Cht12 DOWNSTREAM Cht4 INTERGENIC	TF binding site mE1_TFBS_cad
2R	16954028	2R_16954028_SNP [dm3] 2R_21066523_SNP [dm6]	C	A	2.108e^-13	2.455e^-9	NON_SYNONYMOUS_CODING Cht4	TF binding site mE1_TFBS_cad
2R	16954040	2R_16954040_SNP [dm3] 2R_21066535_SNP [dm6]	G	A	2.108e^-13	2.455e^-9	SYNONYMOUS_CODING Cht4	TF binding site mE1_TFBS_cad
2R	16954759	2R_16954759_SNP [dm3] 2R_21067254_SNP [dm6]	T	A	2.108e^-13	2.455e^-9	UPSTREAM Cht4 DOWNSTREAM Cht9 INTERGENIC	TF binding site mE1_TFBS_cad
2R	17440366	2R_17440366_SNP [dm3] 2R_21552861_SNP [dm6]	T	C	2.108e^-13	2.455e^-9	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	17087215	2L_17087215_SNP [dm3] 2L_17087215_SNP [dm6]	T	C	2.111e^-13	2.455e^-9	UPSTREAM CG12620 DOWNSTREAM CR43819 INTERGENIC
2R	14399675	2R_14399675_SNP [dm3] 2R_18512170_SNP [dm6]	G	T	2.112e^-13	2.455e^-9	INTERGENIC
3L	730897	3L_730897_SNP [dm3] 3L_730897_SNP [dm6]	C	A	2.112e^-13	2.455e^-9	INTERGENIC	TF binding site mE1_TFBS_inv
3R	18111102	3R_18111102_SNP [dm3] 3R_22285380_SNP [dm6]	C	A	2.112e^-13	2.455e^-9	INTRON SKIP	TF binding site mE1_TFBS_chinmo
3R	19339116	3R_19339116_DEL [dm3] 3R_23513394_DEL [dm6]	TT	T	2.112e^-13	2.455e^-9	DOWNSTREAM Irk2 INTERGENIC
3R	23796170	3R_23796170_SNP [dm3] 3R_27970448_SNP [dm6]	G	A	2.112e^-13	2.455e^-9	INTRON betaTub97EF
3R	3774060	3R_3774060_SNP [dm3] 3R_7948338_SNP [dm6]	A	T	2.112e^-13	2.455e^-9	INTRON dsx
X	19020090	X_19020090_SNP [dm3] X_19126057_SNP [dm6]	G	C	2.112e^-13	2.455e^-9	NON_SYNONYMOUS_CODING tgy
2L	10003145	2L_10003145_SNP [dm3] 2L_10003145_SNP [dm6]	A	G	2.114e^-13	2.455e^-9	UPSTREAM SoYb & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	18627325	2L_18627325_SNP [dm3] 2L_18627325_SNP [dm6]	A	T	2.114e^-13	2.455e^-9	INTRON MESR3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	4872347	2L_4872347_SNP [dm3] 2L_4872347_SNP [dm6]	C	G	2.114e^-13	2.455e^-9	SYNONYMOUS_CODING pog	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	17836188	2R_17836188_SNP [dm3] 2R_21948683_SNP [dm6]	C	A	2.114e^-13	2.455e^-9	INTERGENIC
2R	17836201	2R_17836201_SNP [dm3] 2R_21948696_SNP [dm6]	C	G	2.114e^-13	2.455e^-9	INTERGENIC
X	5860553	X_5860553_SNP [dm3] X_5966520_SNP [dm6]	C	G	2.114e^-13	2.455e^-9	UTR_5_PRIME Grip	TF binding site BDTNP1_TFBS_dl
X	5030492	X_5030492_SNP [dm3] X_5136459_SNP [dm6]	A	G	2.121e^-13	2.455e^-9	INTRON rg & 1 other
2R	13618083	2R_13618083_SNP [dm3] 2R_17730578_SNP [dm6]	A	T	2.123e^-13	2.455e^-9	INTRON CG4984 & 1 other
3L	9450826	3L_9450826_SNP [dm3] 3L_9457726_SNP [dm6]	A	C	2.123e^-13	2.455e^-9	UPSTREAM CG3552 & 1 other INTRON CG3552	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9451654	3L_9451654_SNP [dm3] 3L_9458554_SNP [dm6]	C	G	2.123e^-13	2.455e^-9	SYNONYMOUS_CODING CG3552 UPSTREAM CG3437 DOWNSTREAM CG3434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	9451702	3L_9451702_SNP [dm3] 3L_9458602_SNP [dm6]	T	A	2.123e^-13	2.455e^-9	SYNONYMOUS_CODING CG3552 UPSTREAM CG3437 DOWNSTREAM CG3434	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	9459557	3L_9459557_SNP [dm3] 3L_9466457_SNP [dm6]	C	G	2.123e^-13	2.455e^-9	INTRON CG44838	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	18123225	X_18123225_SNP [dm3] X_18229192_SNP [dm6]	G	C	2.123e^-13	2.455e^-9	UPSTREAM CR45622 INTERGENIC
2R	11613815	2R_11613815_SNP [dm3] 2R_15726310_SNP [dm6]	G	A	2.124e^-13	2.455e^-9	INTERGENIC	TF binding site mE1_TFBS_cad
3R	25945808	3R_25945808_SNP [dm3] 3R_30120086_SNP [dm6]	G	T	2.130e^-13	2.455e^-9	INTRON sima
3L	16558699	3L_16558699_SNP [dm3] 3L_16565599_SNP [dm6]	C	A	2.133e^-13	2.455e^-9	INTRON Mipp1
2L	11930291	2L_11930291_SNP [dm3] 2L_11930291_SNP [dm6]	G	T	2.143e^-13	2.455e^-9	INTERGENIC
2L	14015200	2L_14015200_SNP [dm3] 2L_14015200_SNP [dm6]	G	C	2.143e^-13	2.455e^-9	INTRON bgm
3L	11948849	3L_11948849_SNP [dm3] 3L_11955749_SNP [dm6]	A	T	2.143e^-13	2.455e^-9	NON_SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
3L	11948957	3L_11948957_SNP [dm3] 3L_11955857_SNP [dm6]	A	G	2.143e^-13	2.455e^-9	NON_SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
2L	12351621	2L_12351621_SNP [dm3] 2L_12351621_SNP [dm6]	C	T	2.191e^-13	2.455e^-9	INTRON bru-2
2R	14369580	2R_14369580_SNP [dm3] 2R_18482075_SNP [dm6]	C	A	2.191e^-13	2.455e^-9	INTRON CG30116
3L	8188620	3L_8188620_SNP [dm3] 3L_8195520_SNP [dm6]	C	G	2.191e^-13	2.455e^-9	NON_SYNONYMOUS_CODING MED24 DOWNSTREAM Ubc12
3R	15251169	3R_15251169_SNP [dm3] 3R_19425447_SNP [dm6]	A	C	2.191e^-13	2.455e^-9	UPSTREAM CG3517 INTRON CG31221
X	21057239	X_21057239_SNP [dm3] X_21186212_SNP [dm6]	A	T	2.191e^-13	2.455e^-9	INTERGENIC
X	21981731	X_21981731_SNP [dm3] X_22579895_SNP [dm6]	T	A	2.191e^-13	2.455e^-9	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3819221	2L_3819221_SNP [dm3] 2L_3819221_SNP [dm6]	G	A	2.262e^-13	2.519e^-9	DOWNSTREAM CR44077 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12406299	2L_12406299_SNP [dm3] 2L_12406299_SNP [dm6]	A	T	3.268e^-13	3.074e^-9	DOWNSTREAM vir-1 INTRON vir-1
2L	8332477	2L_8332477_SNP [dm3] 2L_8332477_SNP [dm6]	C	T	3.268e^-13	3.074e^-9	SYNONYMOUS_CODING CG14275
2R	2963151	2R_2963151_SNP [dm3] 2R_7075646_SNP [dm6]	C	T	3.274e^-13	3.074e^-9	INTERGENIC
2L	16001993	2L_16001993_SNP [dm3] 2L_16001993_SNP [dm6]	T	C	3.277e^-13	3.074e^-9	DOWNSTREAM CG34167 INTRON beat-Ic EXON CR43825
2R	16942754	2R_16942754_SNP [dm3] 2R_21055249_SNP [dm6]	A	C	3.277e^-13	3.074e^-9	INTRON shg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16953922	2R_16953922_SNP [dm3] 2R_21066417_SNP [dm6]	T	C	3.277e^-13	3.074e^-9	NON_SYNONYMOUS_CODING Cht4 SPLICE_SITE_REGION Cht4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3793726	3R_3793726_SNP [dm3] 3R_7968004_SNP [dm6]	T	C	3.277e^-13	3.074e^-9	UPSTREAM dsx INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	3800374	3R_3800374_SNP [dm3] 3R_7974652_SNP [dm6]	A	G	3.277e^-13	3.074e^-9	SYNONYMOUS_CODING CD98hc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	3801214	3R_3801214_SNP [dm3] 3R_7975492_SNP [dm6]	C	T	3.277e^-13	3.074e^-9	NON_SYNONYMOUS_CODING CD98hc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8746438	2L_8746438_SNP [dm3] 2L_8746438_SNP [dm6]	T	A	3.279e^-13	3.074e^-9	INTERGENIC
2L	8746486	2L_8746486_SNP [dm3] 2L_8746486_SNP [dm6]	A	T	3.279e^-13	3.074e^-9	INTERGENIC
2R	17163596	2R_17163596_SNP [dm3] 2R_21276091_SNP [dm6]	T	A	3.279e^-13	3.074e^-9	INTRON Rgk3
3L	6093045	3L_6093045_SNP [dm3] 3L_6099945_SNP [dm6]	C	A	3.279e^-13	3.074e^-9	INTRON Ets65A
2R	16867487	2R_16867487_SNP [dm3] 2R_20979982_SNP [dm6]	T	C	3.281e^-13	3.074e^-9	INTRON CG9313
2R	14730490	2R_14730490_SNP [dm3] 2R_18842985_SNP [dm6]	T	G	3.286e^-13	3.074e^-9	SYNONYMOUS_CODING CG15099	TF binding site mE1_TFBS_cad
3R	12667475	3R_12667475_SNP [dm3] 3R_16841753_SNP [dm6]	A	T	3.286e^-13	3.074e^-9	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	9186538	2L_9186538_SNP [dm3] 2L_9186538_SNP [dm6]	C	T	3.295e^-13	3.074e^-9	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21056327	2L_21056327_SNP [dm3] 2L_21056327_SNP [dm6]	A	G	3.295e^-13	3.074e^-9	NON_SYNONYMOUS_CODING Itgbetanu
2R	16367296	2R_16367296_SNP [dm3] 2R_20479791_SNP [dm6]	A	G	3.301e^-13	3.074e^-9	DOWNSTREAM CG12484 INTERGENIC
2R	17125021	2R_17125021_SNP [dm3] 2R_21237516_SNP [dm6]	A	C	3.302e^-13	3.074e^-9	INTRON ASPP
2L	16018086	2L_16018086_SNP [dm3] 2L_16018086_SNP [dm6]	G	A	3.308e^-13	3.074e^-9	INTRON beat-Ic
2L	16021765	2L_16021765_SNP [dm3] 2L_16021765_SNP [dm6]	C	T	3.308e^-13	3.074e^-9	INTRON beat-Ic
2L	16023050	2L_16023050_SNP [dm3] 2L_16023050_SNP [dm6]	C	T	3.308e^-13	3.074e^-9	INTRON beat-Ic
2R	16951437	2R_16951437_SNP [dm3] 2R_21063932_SNP [dm6]	T	G	3.309e^-13	3.074e^-9	NON_SYNONYMOUS_CODING Cht12 DOWNSTREAM Cht8
2R	12545689	2R_12545689_SNP [dm3] 2R_16658184_SNP [dm6]	A	G	3.321e^-13	3.074e^-9	INTRON Picot
2R	12546110	2R_12546110_SNP [dm3] 2R_16658605_SNP [dm6]	G	T	3.321e^-13	3.074e^-9	INTRON Picot
2R	12546217	2R_12546217_SNP [dm3] 2R_16658712_SNP [dm6]	T	G	3.321e^-13	3.074e^-9	INTRON Picot
2R	12547479	2R_12547479_SNP [dm3] 2R_16659974_SNP [dm6]	T	G	3.321e^-13	3.074e^-9	UPSTREAM Picot INTRON Picot
3L	1733901	3L_1733901_SNP [dm3] 3L_1733901_SNP [dm6]	G	A	3.323e^-13	3.074e^-9	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19857565	3R_19857565_SNP [dm3] 3R_24031843_SNP [dm6]	T	A	3.334e^-13	3.074e^-9	UPSTREAM Ime4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2514490	3L_2514490_SNP [dm3] 3L_2514490_SNP [dm6]	T	A	3.348e^-13	3.074e^-9	INTRON Spn	TF binding site mE1_TFBS_sbb
2R	16952571	2R_16952571_SNP [dm3] 2R_21065066_SNP [dm6]	A	G	3.351e^-13	3.074e^-9	UPSTREAM Cht12 DOWNSTREAM Cht4 INTERGENIC
2R	2954708	2R_2954708_SNP [dm3] 2R_7067203_SNP [dm6]	T	A	3.397e^-13	3.074e^-9	INTERGENIC	TF binding site mE1_TFBS_cad
2R	2961259	2R_2961259_SNP [dm3] 2R_7073754_SNP [dm6]	G	A	3.397e^-13	3.074e^-9	SYNONYMOUS_CODING CG12831
2R	2995720	2R_2995720_SNP [dm3] 2R_7108215_SNP [dm6]	C	T	3.397e^-13	3.074e^-9	INTRON esn
2R	15117861	2R_15117861_SNP [dm3] 2R_19230356_SNP [dm6]	A	T	3.407e^-13	3.074e^-9	INTRON cora	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	23806158	3R_23806158_SNP [dm3] 3R_27980436_SNP [dm6]	T	C	3.407e^-13	3.074e^-9	INTRON betaTub97EF
X	20364652	X_20364652_SNP [dm3] X_20493625_SNP [dm6]	C	T	3.407e^-13	3.074e^-9	INTRON RhoGAP19D
2R	10914320	2R_10914320_SNP [dm3] 2R_15026815_SNP [dm6]	G	A	3.410e^-13	3.074e^-9	INTRON hbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4944808	3L_4944808_SNP [dm3] 3L_4944808_SNP [dm6]	A	G	3.421e^-13	3.074e^-9	INTRON Con
3R	15623291	3R_15623291_SNP [dm3] 3R_19797569_SNP [dm6]	T	C	3.442e^-13	3.077e^-9	INTRON bnl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	20180585	2R_20180585_SNP [dm3] 2R_24293062_SNP [dm6]	C	T	3.541e^-13	3.136e^-9	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	5977637	X_5977637_SNP [dm3] X_6083604_SNP [dm6]	G	A	3.541e^-13	3.136e^-9	UTR_3_PRIME raptor & 1 other
2L	1387199	2L_1387199_SNP [dm3] 2L_1387199_SNP [dm6]	G	T	4.966e^-13	4.077e^-9	SYNONYMOUS_CODING lea
3R	23725105	3R_23725105_SNP [dm3] 3R_27899383_SNP [dm6]	G	A	5.005e^-13	4.077e^-9	INTRON CG34353
2L	10470277	2L_10470277_SNP [dm3] 2L_10470277_SNP [dm6]	C	G	5.085e^-13	4.077e^-9	INTRON RluA-1
2R	5408498	2R_5408498_SNP [dm3] 2R_9520993_SNP [dm6]	T	C	5.109e^-13	4.077e^-9	INTRON brp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10589715	2R_10589715_SNP [dm3] 2R_14702210_SNP [dm6]	G	A	5.123e^-13	4.077e^-9	INTRON mspo
3R	14486521	3R_14486521_SNP [dm3] 3R_18660799_SNP [dm6]	C	T	5.124e^-13	4.077e^-9	SYNONYMOUS_CODING CstF-64 DOWNSTREAM Cpsf73	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	14374440	3R_14374440_SNP [dm3] 3R_18548718_SNP [dm6]	A	G	5.134e^-13	4.077e^-9	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16021452	2L_16021452_SNP [dm3] 2L_16021452_SNP [dm6]	T	A	5.143e^-13	4.077e^-9	INTRON beat-Ic
2L	16022843	2L_16022843_SNP [dm3] 2L_16022843_SNP [dm6]	G	T	5.144e^-13	4.077e^-9	INTRON beat-Ic
2L	16023332	2L_16023332_SNP [dm3] 2L_16023332_SNP [dm6]	G	C	5.150e^-13	4.077e^-9	INTRON beat-Ic
2L	16023371	2L_16023371_SNP [dm3] 2L_16023371_SNP [dm6]	G	A	5.150e^-13	4.077e^-9	INTRON beat-Ic
2L	16023450	2L_16023450_SNP [dm3] 2L_16023450_SNP [dm6]	G	A	5.150e^-13	4.077e^-9	INTRON beat-Ic
3R	9835545	3R_9835545_SNP [dm3] 3R_14009823_SNP [dm6]	A	T	5.154e^-13	4.077e^-9	INTRON rdx
2R	14962666	2R_14962666_SNP [dm3] 2R_19075161_SNP [dm6]	C	A	5.161e^-13	4.077e^-9	INTRON 5-HT1A
2L	16017182	2L_16017182_SNP [dm3] 2L_16017182_SNP [dm6]	A	C	5.171e^-13	4.077e^-9	INTRON beat-Ic
2L	16021560	2L_16021560_SNP [dm3] 2L_16021560_SNP [dm6]	A	G	5.171e^-13	4.077e^-9	INTRON beat-Ic
3R	14537372	3R_14537372_SNP [dm3] 3R_18711650_SNP [dm6]	T	C	5.175e^-13	4.077e^-9	INTRON VAChT & 1 other
3R	19857678	3R_19857678_SNP [dm3] 3R_24031956_SNP [dm6]	C	T	5.175e^-13	4.077e^-9	UPSTREAM Ime4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14486962	3R_14486962_SNP [dm3] 3R_18661240_SNP [dm6]	G	A	5.196e^-13	4.077e^-9	SYNONYMOUS_CODING Cpsf73 DOWNSTREAM CstF-64	TF binding site mE1_TFBS_cad
3R	14487037	3R_14487037_SNP [dm3] 3R_18661315_SNP [dm6]	G	A	5.196e^-13	4.077e^-9	SYNONYMOUS_CODING Cpsf73 DOWNSTREAM CstF-64	TF binding site mE1_TFBS_cad
3R	19390883	3R_19390883_SNP [dm3] 3R_23565161_SNP [dm6]	A	C	5.196e^-13	4.077e^-9	INTRON beat-IV
3R	19390911	3R_19390911_DEL [dm3] 3R_23565189_DEL [dm6]	CA	T	5.196e^-13	4.077e^-9	INTRON beat-IV
3R	19390974	3R_19390974_SNP [dm3] 3R_23565252_SNP [dm6]	C	T	5.196e^-13	4.077e^-9	INTRON beat-IV
3L	11898260	3L_11898260_SNP [dm3] 3L_11905160_SNP [dm6]	A	G	5.267e^-13	4.077e^-9	INTRON CG44837
2R	16944039	2R_16944039_SNP [dm3] 2R_21056534_SNP [dm6]	C	A	5.282e^-13	4.077e^-9	UTR_5_PRIME shg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
2R	16609987	2R_16609987_SNP [dm3] 2R_20722482_SNP [dm6]	C	T	5.300e^-13	4.077e^-9	UPSTREAM CR44660 INTRON dpr
3R	18117587	3R_18117587_INS [dm3] 3R_22291865_INS [dm6]	A	AGGAGCA	5.303e^-13	4.077e^-9	INTRON SKIP
3L	4944798	3L_4944798_SNP [dm3] 3L_4944798_SNP [dm6]	G	A	5.318e^-13	4.077e^-9	INTRON Con
3R	15622397	3R_15622397_SNP [dm3] 3R_19796675_SNP [dm6]	G	T	5.323e^-13	4.077e^-9	SYNONYMOUS_CODING bnl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
3L	10423569	3L_10423569_SNP [dm3] 3L_10430469_SNP [dm6]	G	C	5.325e^-13	4.077e^-9	SYNONYMOUS_CODING Ir67b
2L	16016955	2L_16016955_SNP [dm3] 2L_16016955_SNP [dm6]	G	T	5.335e^-13	4.077e^-9	INTRON beat-Ic
3R	15634995	3R_15634995_SNP [dm3] 3R_19809273_SNP [dm6]	C	A	5.340e^-13	4.077e^-9	INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20244734	2L_20244734_SNP [dm3] 2L_20244734_SNP [dm6]	A	G	5.350e^-13	4.077e^-9	INTERGENIC
2L	20265321	2L_20265321_SNP [dm3] 2L_20265321_SNP [dm6]	C	T	5.350e^-13	4.077e^-9	UPSTREAM CG17570 INTERGENIC
2L	20890441	2L_20890441_SNP [dm3] 2L_20890441_SNP [dm6]	C	T	5.407e^-13	4.079e^-9	UPSTREAM sky INTRON sky & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16952586	2R_16952586_SNP [dm3] 2R_21065081_SNP [dm6]	C	A	5.407e^-13	4.079e^-9	UPSTREAM Cht12 DOWNSTREAM Cht4 INTERGENIC
2R	6073621	2R_6073621_SNP [dm3] 2R_10186116_SNP [dm6]	T	C	5.418e^-13	4.079e^-9	INTRON KCNQ
2R	2987229	2R_2987229_SNP [dm3] 2R_7099724_SNP [dm6]	A	G	5.487e^-13	4.098e^-9	INTRON esn
2R	2987234	2R_2987234_SNP [dm3] 2R_7099729_SNP [dm6]	G	A	5.487e^-13	4.098e^-9	INTRON esn
2R	15029436	2R_15029436_DEL [dm3] 2R_19141931_DEL [dm6]	AA	A	6.368e^-13	4.736e^-9	UTR_5_PRIME ena DOWNSTREAM CG15111 INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3920498	3L_3920498_DEL [dm3] 3L_3920498_DEL [dm6]	AC	A	7.389e^-13	5.474e^-9	INTRON Eip63F-1
X	13939332	X_13939332_INS [dm3] X_14045299_INS [dm6]	T	TT	7.855e^-13	5.718e^-9	INTERGENIC
2R	16952513	2R_16952513_SNP [dm3] 2R_21065008_SNP [dm6]	T	G	7.898e^-13	5.718e^-9	UPSTREAM Cht12 DOWNSTREAM Cht4 INTERGENIC
2L	9453519	2L_9453519_INS [dm3] 2L_9453519_INS [dm6]	T	TT	7.971e^-13	5.718e^-9	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	9453521	2L_9453521_SNP [dm3] 2L_9453521_SNP [dm6]	T	G	7.971e^-13	5.718e^-9	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	16027330	2L_16027330_SNP [dm3] 2L_16027330_SNP [dm6]	C	T	8.038e^-13	5.718e^-9	INTRON beat-Ic
2L	9199928	2L_9199928_SNP [dm3] 2L_9199928_SNP [dm6]	T	G	8.038e^-13	5.718e^-9	INTRON tai
3R	14486920	3R_14486920_SNP [dm3] 3R_18661198_SNP [dm6]	C	T	8.076e^-13	5.718e^-9	SYNONYMOUS_CODING Cpsf73 DOWNSTREAM CstF-64	TF binding site mE1_TFBS_cad
3R	23801883	3R_23801883_SNP [dm3] 3R_27976161_SNP [dm6]	G	C	8.088e^-13	5.718e^-9	INTRON betaTub97EF
3L	19991045	3L_19991045_SNP [dm3] 3L_19997945_SNP [dm6]	T	C	8.184e^-13	5.718e^-9	UTR_3_PRIME CG7433 DOWNSTREAM CG7433 & 1 other
2R	2944841	2R_2944841_SNP [dm3] 2R_7057336_SNP [dm6]	G	A	8.195e^-13	5.718e^-9	SYNONYMOUS_CODING Tsp42Ep DOWNSTREAM Tsp42Eo & 1 other	TF binding site mE1_TFBS_chinmo
2R	2944931	2R_2944931_SNP [dm3] 2R_7057426_SNP [dm6]	C	A	8.195e^-13	5.718e^-9	DOWNSTREAM Tsp42Eo & 1 other INTRON Tsp42Ep	TF binding site mE1_TFBS_chinmo
2R	2953739	2R_2953739_SNP [dm3] 2R_7066234_SNP [dm6]	C	T	8.195e^-13	5.718e^-9	DOWNSTREAM Tsp42Er INTERGENIC
2R	2953768	2R_2953768_SNP [dm3] 2R_7066263_SNP [dm6]	G	A	8.195e^-13	5.718e^-9	DOWNSTREAM Tsp42Er INTERGENIC
2L	20602810	2L_20602810_SNP [dm3] 2L_20602810_SNP [dm6]	A	C	8.202e^-13	5.718e^-9	DOWNSTREAM CG31677 INTRON CR44909
3R	18116781	3R_18116781_DEL [dm3] 3R_22291059_DEL [dm6]	ACGACGTCGA	A	8.220e^-13	5.718e^-9	INTRON SKIP
3R	3763874	3R_3763874_SNP [dm3] 3R_7938152_SNP [dm6]	G	A	8.240e^-13	5.718e^-9	INTRON dsx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14074673	3L_14074673_SNP [dm3] 3L_14081573_SNP [dm6]	T	G	8.241e^-13	5.718e^-9	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16952573	2R_16952573_SNP [dm3] 2R_21065068_SNP [dm6]	A	G	8.461e^-13	5.849e^-9	UPSTREAM Cht12 DOWNSTREAM Cht4 INTERGENIC
2L	20266267	2L_20266267_INS [dm3] 2L_20266267_INS [dm6]	T	TCA	8.645e^-13	5.954e^-9	INTERGENIC
3L	18024214	3L_18024214_SNP [dm3] 3L_18031114_SNP [dm6]	G	A	1.167e^-12	7.969e^-9	INTRON Eip75B
3L	15367504	3L_15367504_SNP [dm3] 3L_15374404_SNP [dm6]	A	T	1.174e^-12	7.969e^-9	INTERGENIC
3L	15367623	3L_15367623_SNP [dm3] 3L_15374523_SNP [dm6]	G	A	1.174e^-12	7.969e^-9	INTERGENIC
3R	21266314	3R_21266314_SNP [dm3] 3R_25440592_SNP [dm6]	G	A	1.174e^-12	7.969e^-9	INTRON Fur1
3R	18685982	3R_18685982_SNP [dm3] 3R_22860260_SNP [dm6]	A	G	1.192e^-12	8.062e^-9	INTERGENIC
3R	19449454	3R_19449454_SNP [dm3] 3R_23623732_SNP [dm6]	T	C	1.253e^-12	8.372e^-9	INTRON CG31145
3R	14486518	3R_14486518_SNP [dm3] 3R_18660796_SNP [dm6]	A	C	1.259e^-12	8.372e^-9	SYNONYMOUS_CODING CstF-64 DOWNSTREAM Cpsf73	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	22581124	3R_22581124_INS [dm3] 3R_26755402_INS [dm6]	A	AAAGCA	1.259e^-12	8.372e^-9	INTERGENIC
3R	22581127	3R_22581127_SNP [dm3] 3R_26755405_SNP [dm6]	T	C	1.259e^-12	8.372e^-9	INTERGENIC
2R	14962665	2R_14962665_SNP [dm3] 2R_19075160_SNP [dm6]	C	A	1.265e^-12	8.372e^-9	INTRON 5-HT1A
3R	12387604	3R_12387604_INS [dm3] 3R_16561882_INS [dm6]	A	CCGATGGGT	1.266e^-12	8.372e^-9	INTRON CG42342
2L	8746489	2L_8746489_SNP [dm3] 2L_8746489_SNP [dm6]	G	T	1.272e^-12	8.372e^-9	INTERGENIC
2R	3007692	2R_3007692_SNP [dm3] 2R_7120187_SNP [dm6]	A	C	1.274e^-12	8.372e^-9	INTRON esn
3R	24278054	3R_24278054_SNP [dm3] 3R_28452332_SNP [dm6]	G	A	1.294e^-12	8.470e^-9	INTRON beat-VI	TF binding site mE1_TFBS_chinmo
2L	9934895	2L_9934895_SNP [dm3] 2L_9934895_SNP [dm6]	T	C	1.321e^-12	8.620e^-9	UTR_3_PRIME CG31712
2R	13618071	2R_13618071_SNP [dm3] 2R_17730566_SNP [dm6]	G	T	1.333e^-12	8.664e^-9	INTRON CG4984 & 1 other
2L	9934888	2L_9934888_SNP [dm3] 2L_9934888_SNP [dm6]	T	C	1.357e^-12	8.791e^-9	UTR_3_PRIME CG31712
2R	6073703	2R_6073703_SNP [dm3] 2R_10186198_SNP [dm6]	A	T	1.440e^-12	9.299e^-9	INTRON KCNQ
3R	20252079	3R_20252079_SNP [dm3] 3R_24426357_SNP [dm6]	G	A	1.463e^-12	9.411e^-9	INTRON nAChRalpha1
2R	3081015	2R_3081015_SNP [dm3] 2R_7193510_SNP [dm6]	A	T	1.923e^-12	1.233e^-8	NON_SYNONYMOUS_CODING pk INTRON pk	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9225132	2L_9225132_SNP [dm3] 2L_9225132_SNP [dm6]	C	T	2.029e^-12	1.297e^-8	INTRON tai	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	12950264	3L_12950264_SNP [dm3] 3L_12957164_SNP [dm6]	G	C	2.070e^-12	1.314e^-8	INTERGENIC
3L	12950269	3L_12950269_SNP [dm3] 3L_12957169_SNP [dm6]	A	T	2.070e^-12	1.314e^-8	INTERGENIC
2R	16955273	2R_16955273_SNP [dm3] 2R_21067768_SNP [dm6]	C	T	2.103e^-12	1.330e^-8	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
3R	13869055	3R_13869055_SNP [dm3] 3R_18043333_SNP [dm6]	C	A	2.246e^-12	1.416e^-8	INTERGENIC
2L	1555694	2L_1555694_SNP [dm3] 2L_1555694_SNP [dm6]	T	C	2.365e^-12	1.486e^-8	UTR_5_PRIME haf INTRON haf	TF binding site mE1_TFBS_HSA
3R	10396652	3R_10396652_SNP [dm3] 3R_14570930_SNP [dm6]	C	T	2.521e^-12	1.578e^-8	NON_SYNONYMOUS_CODING CG7987	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19307552	2R_19307552_SNP [dm3] 2R_23420029_SNP [dm6]	A	G	2.891e^-12	1.804e^-8	UPSTREAM CG9812 INTERGENIC
3R	19449620	3R_19449620_SNP [dm3] 3R_23623898_SNP [dm6]	T	C	3.137e^-12	1.951e^-8	INTRON CG31145	TF binding site BDTNP1_TFBS_sna
X	20364902	X_20364902_INS [dm3] X_20493875_INS [dm6]	T	TTAGGTCAATT...	3.169e^-12	1.965e^-8	INTRON RhoGAP19D
X	20365168	X_20365168_SNP [dm3] X_20494141_SNP [dm6]	T	C	3.195e^-12	1.974e^-8	INTRON RhoGAP19D
3R	21297537	3R_21297537_SNP [dm3] 3R_25471815_SNP [dm6]	G	A	3.624e^-12	2.217e^-8	INTRON Fur1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	21298590	3R_21298590_SNP [dm3] 3R_25472868_SNP [dm6]	G	T	3.624e^-12	2.217e^-8	UTR_5_PRIME Fur1 UPSTREAM Vps33B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	21298868	3R_21298868_SNP [dm3] 3R_25473146_SNP [dm6]	T	G	3.624e^-12	2.217e^-8	UPSTREAM Vps33B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	14512996	X_14512996_SNP [dm3] X_14618963_SNP [dm6]	A	G	3.712e^-12	2.263e^-8	INTRON NetA
2R	2968730	2R_2968730_SNP [dm3] 2R_7081225_SNP [dm6]	A	T	4.785e^-12	2.908e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16377608	2R_16377608_SNP [dm3] 2R_20490103_SNP [dm6]	T	G	4.872e^-12	2.951e^-8	DOWNSTREAM CR44643 INTERGENIC
3R	23643170	3R_23643170_SNP [dm3] 3R_27817448_SNP [dm6]	C	T	4.931e^-12	2.970e^-8	INTRON CG34353	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16955244	2R_16955244_SNP [dm3] 2R_21067739_SNP [dm6]	A	T	4.934e^-12	2.970e^-8	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
3L	8833389	3L_8833389_SNP [dm3] 3L_8840289_SNP [dm6]	A	G	5.043e^-12	3.025e^-8	INTRON dally	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu
2R	2728758	2R_2728758_SNP [dm3] 2R_6841253_SNP [dm6]	G	T	5.078e^-12	3.036e^-8	UPSTREAM CR44166 INTERGENIC
X	20707688	X_20707688_SNP [dm3] X_20836661_SNP [dm6]	A	G	5.533e^-12	3.298e^-8	INTRON shakB
3L	12608001	3L_12608001_SNP [dm3] 3L_12614901_SNP [dm6]	C	T	6.451e^-12	3.832e^-8	INTRON caup	TF binding site mE1_TFBS_Stat92E
2L	19787508	2L_19787508_SNP [dm3] 2L_19787508_SNP [dm6]	G	A	7.033e^-12	4.165e^-8	INTRON CdGAPr
3L	10784517	3L_10784517_SNP [dm3] 3L_10791417_SNP [dm6]	C	T	7.251e^-12	4.280e^-8	INTERGENIC
X	502761	X_502761_INS [dm3] X_608728_INS [dm6]	G	GG	7.448e^-12	4.383e^-8	INTRON CG13366
X	13271363	X_13271363_SNP [dm3] X_13377330_SNP [dm6]	T	C	7.666e^-12	4.497e^-8	INTRON CG1640
2L	10078242	2L_10078242_SNP [dm3] 2L_10078242_SNP [dm6]	A	G	8.408e^-12	4.917e^-8	INTRON CG44153
2L	2841938	2L_2841938_SNP [dm3] 2L_2841938_SNP [dm6]	T	C	8.653e^-12	5.028e^-8	SYNONYMOUS_CODING CG2975 DOWNSTREAM CG18558
2L	2841965	2L_2841965_SNP [dm3] 2L_2841965_SNP [dm6]	T	A	8.653e^-12	5.028e^-8	SYNONYMOUS_CODING CG2975 DOWNSTREAM CG18558
2L	13747184	2L_13747184_SNP [dm3] 2L_13747184_SNP [dm6]	A	G	8.909e^-12	5.161e^-8	DOWNSTREAM mir-1002 & 1 other INTRON CR44846 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14420035	2R_14420035_SNP [dm3] 2R_18532530_SNP [dm6]	C	G	8.955e^-12	5.172e^-8	INTRON CG10924	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21253486	3R_21253486_SNP [dm3] 3R_25427764_SNP [dm6]	A	G	9.055e^-12	5.197e^-8	INTRON Fur1
3R	21253497	3R_21253497_SNP [dm3] 3R_25427775_SNP [dm6]	A	G	9.055e^-12	5.197e^-8	INTRON Fur1
2L	20682066	2L_20682066_SNP [dm3] 2L_20682066_SNP [dm6]	T	G	9.775e^-12	5.593e^-8	UPSTREAM CG2617 & 1 other INTERGENIC
3L	10778041	3L_10778041_SNP [dm3] 3L_10784941_SNP [dm6]	G	T	1.038e^-11	5.922e^-8	EXON CR44544
3R	9289813	3R_9289813_SNP [dm3] 3R_13464091_SNP [dm6]	T	C	1.049e^-11	5.928e^-8	UTR_3_PRIME CG14372 DOWNSTREAM mir-252 INTRON CR17025
3R	9289919	3R_9289919_SNP [dm3] 3R_13464197_SNP [dm6]	G	C	1.049e^-11	5.928e^-8	DOWNSTREAM mir-252 & 1 other INTRON CR17025
3R	9290848	3R_9290848_SNP [dm3] 3R_13465126_SNP [dm6]	T	C	1.049e^-11	5.928e^-8	UPSTREAM mir-252 DOWNSTREAM CG14372 & 1 other INTRON CR17025
3L	22410565	3L_22410565_SNP [dm3] 3L_22417465_SNP [dm6]	A	T	1.166e^-11	6.570e^-8	INTERGENIC
3R	3787739	3R_3787739_SNP [dm3] 3R_7962017_SNP [dm6]	C	A	1.173e^-11	6.590e^-8	INTRON dsx
X	20364947	X_20364947_SNP [dm3] X_20493920_SNP [dm6]	G	T	1.184e^-11	6.630e^-8	INTRON RhoGAP19D
2L	16964832	2L_16964832_SNP [dm3] 2L_16964832_SNP [dm6]	T	G	1.191e^-11	6.650e^-8	UPSTREAM CR45285 INTERGENIC
2R	16955227	2R_16955227_SNP [dm3] 2R_21067722_SNP [dm6]	C	A	1.195e^-11	6.654e^-8	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
2R	15294069	2R_15294069_SNP [dm3] 2R_19406564_SNP [dm6]	A	T	1.270e^-11	7.047e^-8	DOWNSTREAM hts INTRON hts
3R	3863628	3R_3863628_SNP [dm3] 3R_8037906_SNP [dm6]	C	G	1.303e^-11	7.212e^-8	UPSTREAM CR44936 INTERGENIC
3R	22628288	3R_22628288_SNP [dm3] 3R_26802566_SNP [dm6]	C	T	1.310e^-11	7.230e^-8	INTRON Tl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20611995	2L_20611995_DEL [dm3] 2L_20611995_DEL [dm6]	ATATATATATA...	A	1.336e^-11	7.350e^-8	INTRON CR44909
2L	10750679	2L_10750679_SNP [dm3] 2L_10750679_SNP [dm6]	T	A	1.357e^-11	7.442e^-8	INTRON CG17124
3L	11767719	3L_11767719_SNP [dm3] 3L_11774619_SNP [dm6]	C	G	1.432e^-11	7.831e^-8	UPSTREAM mir-956 & 1 other DOWNSTREAM Pi3K68D INTERGENIC
X	18049173	X_18049173_SNP [dm3] X_18155140_SNP [dm6]	A	G	1.454e^-11	7.928e^-8	UPSTREAM Frq1 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	23480476	3R_23480476_SNP [dm3] 3R_27654754_SNP [dm6]	G	A	1.487e^-11	8.070e^-8	INTRON tau	TF binding site mE1_TFBS_inv
2R	19505719	2R_19505719_SNP [dm3] 2R_23618196_SNP [dm6]	A	T	1.488e^-11	8.070e^-8	INTERGENIC
3L	10777901	3L_10777901_SNP [dm3] 3L_10784801_SNP [dm6]	G	A	1.508e^-11	8.152e^-8	INTRON CR44544
3R	9286072	3R_9286072_SNP [dm3] 3R_13460350_SNP [dm6]	A	C	1.539e^-11	8.297e^-8	SYNONYMOUS_CODING CG14372 INTRON CR17025
2R	7396822	2R_7396822_SNP [dm3] 2R_11509317_SNP [dm6]	C	T	1.716e^-11	9.224e^-8	UTR_3_PRIME inv	TF binding site mE1_TFBS_cad
2L	12263056	2L_12263056_SNP [dm3] 2L_12263056_SNP [dm6]	A	G	2.171e^-11	1.164e^-7	INTRON aret
3L	10777906	3L_10777906_SNP [dm3] 3L_10784806_SNP [dm6]	T	A	2.191e^-11	1.164e^-7	INTRON CR44544
3L	10777911	3L_10777911_SNP [dm3] 3L_10784811_SNP [dm6]	G	T	2.191e^-11	1.164e^-7	INTRON CR44544
3L	22248164	3L_22248164_DEL [dm3] 3L_22255064_DEL [dm6]	TGGGC	T	2.204e^-11	1.164e^-7	INTERGENIC	TF binding site mE1_TFBS_cad
3L	22357533	3L_22357533_DEL [dm3] 3L_22364433_DEL [dm6]	CGACAACAACGAA...	C	2.204e^-11	1.164e^-7	INTRON Ten-m
3L	22407512	3L_22407512_DEL [dm3] 3L_22414412_DEL [dm6]	CCAGGG	C	2.204e^-11	1.164e^-7	INTERGENIC
2L	1555372	2L_1555372_SNP [dm3] 2L_1555372_SNP [dm6]	A	G	2.329e^-11	1.223e^-7	UTR_5_PRIME haf INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19505705	2R_19505705_SNP [dm3] 2R_23618182_SNP [dm6]	G	A	2.341e^-11	1.223e^-7	INTERGENIC
2R	19505717	2R_19505717_SNP [dm3] 2R_23618194_SNP [dm6]	T	A	2.341e^-11	1.223e^-7	INTERGENIC
2R	19505742	2R_19505742_SNP [dm3] 2R_23618219_SNP [dm6]	G	C	2.341e^-11	1.223e^-7	INTERGENIC
2L	11124090	2L_11124090_SNP [dm3] 2L_11124090_SNP [dm6]	T	C	2.349e^-11	1.224e^-7	NON_SYNONYMOUS_CODING Nup160 UPSTREAM Csl4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11778606	3L_11778606_SNP [dm3] 3L_11785506_SNP [dm6]	A	G	2.380e^-11	1.236e^-7	DOWNSTREAM Pi3K68D INTRON Pi3K68D
2L	11099564	2L_11099564_SNP [dm3] 2L_11099564_SNP [dm6]	C	T	2.438e^-11	1.263e^-7	SYNONYMOUS_CODING Ge-1
X	14032463	X_14032463_SNP [dm3] X_14138430_SNP [dm6]	A	C	2.580e^-11	1.333e^-7	INTERGENIC
3R	9275525	3R_9275525_SNP [dm3] 3R_13449803_SNP [dm6]	T	A	2.606e^-11	1.342e^-7	UPSTREAM CG14372 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13085810	2R_13085810_SNP [dm3] 2R_17198305_SNP [dm6]	G	A	2.694e^-11	1.384e^-7	INTERGENIC
2L	15308670	2L_15308670_SNP [dm3] 2L_15308670_SNP [dm6]	A	T	2.717e^-11	1.392e^-7	INTERGENIC
3L	20907603	3L_20907603_SNP [dm3] 3L_20914503_SNP [dm6]	C	T	2.967e^-11	1.516e^-7	UPSTREAM CR43930 INTERGENIC
2L	21251508	2L_21251508_SNP [dm3] 2L_21251508_SNP [dm6]	C	T	3.121e^-11	1.590e^-7	INTRON Hr39	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12038180	2R_12038180_SNP [dm3] 2R_16150675_SNP [dm6]	T	A	3.177e^-11	1.614e^-7	UTR_5_PRIME lbk UPSTREAM CG10731	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	13180013	3L_13180013_INS [dm3] 3L_13186913_INS [dm6]	G	GA	3.817e^-11	1.897e^-7	INTERGENIC
X	5978253	X_5978253_SNP [dm3] X_6084220_SNP [dm6]	C	A	3.881e^-11	1.897e^-7	SPLICE_SITE_REGION Mipp2 & 1 other INTRON Mipp2 & 1 other
X	5978751	X_5978751_SNP [dm3] X_6084718_SNP [dm6]	A	T	3.881e^-11	1.897e^-7	INTRON raptor & 1 other	TF binding site mE1_TFBS_HSA
3L	22248934	3L_22248934_SNP [dm3] 3L_22255834_SNP [dm6]	G	T	3.999e^-11	1.897e^-7	INTERGENIC
3L	22270619	3L_22270619_SNP [dm3] 3L_22277519_SNP [dm6]	G	C	3.999e^-11	1.897e^-7	UTR_5_PRIME srpk79D UPSTREAM srpk79D INTRON srpk79D
3L	22275036	3L_22275036_SNP [dm3] 3L_22281936_SNP [dm6]	A	T	3.999e^-11	1.897e^-7	INTRON srpk79D
3L	22282587	3L_22282587_SNP [dm3] 3L_22289487_SNP [dm6]	T	G	3.999e^-11	1.897e^-7	SYNONYMOUS_CODING Aats-ile	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	22283183	3L_22283183_SNP [dm3] 3L_22290083_SNP [dm6]	T	A	3.999e^-11	1.897e^-7	NON_SYNONYMOUS_CODING Aats-ile
3L	22285434	3L_22285434_SNP [dm3] 3L_22292334_SNP [dm6]	G	T	3.999e^-11	1.897e^-7	NON_SYNONYMOUS_CODING Aats-ile DOWNSTREAM Ten-m	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22294610	3L_22294610_SNP [dm3] 3L_22301510_SNP [dm6]	A	T	3.999e^-11	1.897e^-7	INTRON Ten-m
3L	22297019	3L_22297019_SNP [dm3] 3L_22303919_SNP [dm6]	G	T	3.999e^-11	1.897e^-7	SYNONYMOUS_CODING Ten-m	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	22299807	3L_22299807_SNP [dm3] 3L_22306707_SNP [dm6]	C	T	3.999e^-11	1.897e^-7	NON_SYNONYMOUS_CODING Ten-m INTRON Ten-m
3L	22299851	3L_22299851_SNP [dm3] 3L_22306751_SNP [dm6]	C	A	3.999e^-11	1.897e^-7	NON_SYNONYMOUS_CODING Ten-m INTRON Ten-m
3L	22303328	3L_22303328_SNP [dm3] 3L_22310228_SNP [dm6]	G	A	3.999e^-11	1.897e^-7	INTRON Ten-m
3L	22304810	3L_22304810_SNP [dm3] 3L_22311710_SNP [dm6]	G	T	3.999e^-11	1.897e^-7	INTRON Ten-m
3L	22306498	3L_22306498_SNP [dm3] 3L_22313398_SNP [dm6]	T	C	3.999e^-11	1.897e^-7	INTRON Ten-m
3L	22313079	3L_22313079_SNP [dm3] 3L_22319979_SNP [dm6]	A	C	3.999e^-11	1.897e^-7	INTRON Ten-m
3L	22314105	3L_22314105_SNP [dm3] 3L_22321005_SNP [dm6]	C	A	3.999e^-11	1.897e^-7	INTRON Ten-m
3L	22314642	3L_22314642_SNP [dm3] 3L_22321542_SNP [dm6]	A	G	3.999e^-11	1.897e^-7	INTRON Ten-m
3L	22314767	3L_22314767_SNP [dm3] 3L_22321667_SNP [dm6]	T	C	3.999e^-11	1.897e^-7	INTRON Ten-m
3L	22381236	3L_22381236_SNP [dm3] 3L_22388136_SNP [dm6]	T	G	3.999e^-11	1.897e^-7	INTRON Ten-m	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22413318	3L_22413318_DEL [dm3] 3L_22420218_DEL [dm6]	CAAGTTTTCC	C	3.999e^-11	1.897e^-7	DOWNSTREAM CR45237 INTERGENIC
3L	22414562	3L_22414562_SNP [dm3] 3L_22421462_SNP [dm6]	T	A	3.999e^-11	1.897e^-7	UPSTREAM CR45237 INTERGENIC
3L	22415267	3L_22415267_SNP [dm3] 3L_22422167_SNP [dm6]	A	T	3.999e^-11	1.897e^-7	UPSTREAM CR45237 INTERGENIC
3L	22415464	3L_22415464_SNP [dm3] 3L_22422364_SNP [dm6]	G	A	3.999e^-11	1.897e^-7	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	22658843	3L_22658843_SNP [dm3] 3L_22665743_SNP [dm6]	C	T	3.999e^-11	1.897e^-7	EXON CR43270
3R	25593616	3R_25593616_SNP [dm3] 3R_29767894_SNP [dm6]	G	T	4.204e^-11	1.989e^-7	INTRON kay
3R	22419035	3R_22419035_SNP [dm3] 3R_26593313_SNP [dm6]	T	A	4.266e^-11	2.013e^-7	INTRON scrib
2L	14012487	2L_14012487_SNP [dm3] 2L_14012487_SNP [dm6]	G	A	4.410e^-11	2.076e^-7	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18138528	2L_18138528_SNP [dm3] 2L_18138528_SNP [dm6]	A	T	4.640e^-11	2.179e^-7	UPSTREAM kel DOWNSTREAM Socs36E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	17839335	2L_17839335_SNP [dm3] 2L_17839335_SNP [dm6]	T	A	4.652e^-11	2.179e^-7	INTRON CadN2
2L	7620572	2L_7620572_SNP [dm3] 2L_7620572_SNP [dm6]	A	T	4.744e^-11	2.211e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7620576	2L_7620576_SNP [dm3] 2L_7620576_SNP [dm6]	C	T	4.744e^-11	2.211e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19132859	2R_19132859_SNP [dm3] 2R_23245336_SNP [dm6]	G	A	4.833e^-11	2.247e^-7	UTR_5_PRIME yip3 INTRON yip3
2L	11099480	2L_11099480_SNP [dm3] 2L_11099480_SNP [dm6]	G	T	4.855e^-11	2.251e^-7	SYNONYMOUS_CODING Ge-1
2R	19509940	2R_19509940_SNP [dm3] 2R_23622417_SNP [dm6]	T	G	4.873e^-11	2.254e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10912505	X_10912505_SNP [dm3] X_11018472_SNP [dm6]	A	G	5.197e^-11	2.398e^-7	INTRON CG42339
3L	22405719	3L_22405719_DEL [dm3] 3L_22412619_DEL [dm6]	AA	A	5.221e^-11	2.403e^-7	INTERGENIC
2R	16944786	2R_16944786_SNP [dm3] 2R_21057281_SNP [dm6]	C	T	5.574e^-11	2.553e^-7	UPSTREAM cpa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	16944885	2R_16944885_SNP [dm3] 2R_21057380_SNP [dm6]	G	C	5.574e^-11	2.553e^-7	UPSTREAM cpa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	22299368	3L_22299368_SNP [dm3] 3L_22306268_SNP [dm6]	A	G	5.624e^-11	2.561e^-7	SYNONYMOUS_CODING Ten-m INTRON Ten-m
3L	15321294	3L_15321294_SNP [dm3] 3L_15328194_SNP [dm6]	A	T	5.632e^-11	2.561e^-7	INTERGENIC
3L	22329632	3L_22329632_SNP [dm3] 3L_22336532_SNP [dm6]	C	G	5.632e^-11	2.561e^-7	INTRON Ten-m	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22282146	3L_22282146_SNP [dm3] 3L_22289046_SNP [dm6]	C	A	5.654e^-11	2.561e^-7	SYNONYMOUS_CODING Aats-ile UPSTREAM Hem	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	9666532	2L_9666532_SNP [dm3] 2L_9666532_SNP [dm6]	C	T	5.660e^-11	2.561e^-7	INTERGENIC
3L	14373142	3L_14373142_SNP [dm3] 3L_14380042_SNP [dm6]	G	A	5.679e^-11	2.562e^-7	INTERGENIC
3L	12021606	3L_12021606_SNP [dm3] 3L_12028506_SNP [dm6]	T	A	5.733e^-11	2.562e^-7	DOWNSTREAM CR43994 INTRON rols
3L	22172175	3L_22172175_SNP [dm3] 3L_22179075_SNP [dm6]	G	T	5.733e^-11	2.562e^-7	INTRON olf413
3L	22252865	3L_22252865_SNP [dm3] 3L_22259765_SNP [dm6]	G	A	5.733e^-11	2.562e^-7	SYNONYMOUS_CODING Rich	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22411948	3L_22411948_SNP [dm3] 3L_22418848_SNP [dm6]	T	A	5.733e^-11	2.562e^-7	INTERGENIC
2R	16944953	2R_16944953_SNP [dm3] 2R_21057448_SNP [dm6]	A	G	5.833e^-11	2.601e^-7	UPSTREAM cpa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	22283682	3L_22283682_SNP [dm3] 3L_22290582_SNP [dm6]	A	T	5.986e^-11	2.631e^-7	NON_SYNONYMOUS_CODING Aats-ile	TF binding site mE1_TFBS_HSA
3L	22283775	3L_22283775_SNP [dm3] 3L_22290675_SNP [dm6]	G	A	5.986e^-11	2.631e^-7	SYNONYMOUS_CODING Aats-ile	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22316602	3L_22316602_SNP [dm3] 3L_22323502_SNP [dm6]	C	T	5.986e^-11	2.631e^-7	INTRON Ten-m
3L	22317330	3L_22317330_SNP [dm3] 3L_22324230_SNP [dm6]	G	T	5.986e^-11	2.631e^-7	INTRON Ten-m
3L	22322929	3L_22322929_SNP [dm3] 3L_22329829_SNP [dm6]	A	G	5.986e^-11	2.631e^-7	UTR_5_PRIME CG32450 INTRON Ten-m
3L	22385883	3L_22385883_SNP [dm3] 3L_22392783_SNP [dm6]	G	A	5.986e^-11	2.631e^-7	INTRON Ten-m
3R	21330552	3R_21330552_SNP [dm3] 3R_25504830_SNP [dm6]	C	T	6.688e^-11	2.933e^-7	UPSTREAM CG5107 DOWNSTREAM CR45651 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11857254	3L_11857254_SNP [dm3] 3L_11864154_SNP [dm6]	C	G	6.859e^-11	3.001e^-7	UPSTREAM CG44837 INTRON CG44837
2R	16955201	2R_16955201_DEL [dm3] 2R_21067696_DEL [dm6]	TGAAATACAT	T	7.094e^-11	3.097e^-7	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
3L	18024209	3L_18024209_SNP [dm3] 3L_18031109_SNP [dm6]	G	A	7.174e^-11	3.124e^-7	INTRON Eip75B
3L	2303046	3L_2303046_SNP [dm3] 3L_2303046_SNP [dm6]	A	G	7.353e^-11	3.194e^-7	INTERGENIC
3L	22165335	3L_22165335_SNP [dm3] 3L_22172235_SNP [dm6]	C	T	7.498e^-11	3.213e^-7	INTRON olf413
3L	22165462	3L_22165462_SNP [dm3] 3L_22172362_SNP [dm6]	C	G	7.498e^-11	3.213e^-7	INTRON olf413
3L	22232696	3L_22232696_SNP [dm3] 3L_22239596_SNP [dm6]	T	A	7.498e^-11	3.213e^-7	INTRON olf413	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22361405	3L_22361405_SNP [dm3] 3L_22368305_SNP [dm6]	C	A	7.498e^-11	3.213e^-7	INTRON Ten-m
3L	22373059	3L_22373059_SNP [dm3] 3L_22379959_SNP [dm6]	A	G	7.498e^-11	3.213e^-7	INTRON Ten-m	TF binding site mE1_TFBS_sens
3L	22374985	3L_22374985_SNP [dm3] 3L_22381885_SNP [dm6]	C	T	7.498e^-11	3.213e^-7	INTRON Ten-m	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
3L	17559710	3L_17559710_DEL [dm3] 3L_17566610_DEL [dm6]	CAC	C	7.915e^-11	3.374e^-7	UPSTREAM snoRNA:Me28S-A576 INTRON Eip74EF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22299186	3L_22299186_SNP [dm3] 3L_22306086_SNP [dm6]	T	G	7.929e^-11	3.374e^-7	NON_SYNONYMOUS_CODING Ten-m INTRON Ten-m
3L	22301988	3L_22301988_SNP [dm3] 3L_22308888_SNP [dm6]	G	A	7.929e^-11	3.374e^-7	INTRON Ten-m	TF binding site mE1_TFBS_chinmo
3L	22264030	3L_22264030_SNP [dm3] 3L_22270930_SNP [dm6]	G	A	7.977e^-11	3.387e^-7	NON_SYNONYMOUS_CODING Csp INTRON Csp
2L	10655882	2L_10655882_SNP [dm3] 2L_10655882_SNP [dm6]	T	C	8.025e^-11	3.389e^-7	INTERGENIC
2L	16044904	2L_16044904_SNP [dm3] 2L_16044904_SNP [dm6]	A	T	8.038e^-11	3.389e^-7	INTRON BicC & 1 other
2L	16044905	2L_16044905_SNP [dm3] 2L_16044905_SNP [dm6]	A	T	8.038e^-11	3.389e^-7	INTRON BicC & 1 other
3R	24515476	3R_24515476_SNP [dm3] 3R_28689754_SNP [dm6]	T	G	8.257e^-11	3.474e^-7	INTRON CG9990
3L	22690740	3L_22690740_SNP [dm3] 3L_22697640_SNP [dm6]	A	G	8.729e^-11	3.664e^-7	UTR_3_PRIME CG32453
3L	11856891	3L_11856891_SNP [dm3] 3L_11863791_SNP [dm6]	A	T	9.738e^-11	4.031e^-7	UPSTREAM CG44837 INTRON CG44837
3L	11856894	3L_11856894_DEL [dm3] 3L_11863794_DEL [dm6]	TATGTA	T	9.738e^-11	4.031e^-7	UPSTREAM CG44837 INTRON CG44837
3L	11856910	3L_11856910_DEL [dm3] 3L_11863810_DEL [dm6]	TTGTTA	T	9.738e^-11	4.031e^-7	UPSTREAM CG44837 INTRON CG44837
3L	11856919	3L_11856919_DEL [dm3] 3L_11863819_DEL [dm6]	ATATGTGCTAA...	A	9.738e^-11	4.031e^-7	UPSTREAM CG44837 INTRON CG44837
3L	11856975	3L_11856975_SNP [dm3] 3L_11863875_SNP [dm6]	A	G	9.738e^-11	4.031e^-7	UPSTREAM CG44837 INTRON CG44837
3L	11857241	3L_11857241_INS [dm3] 3L_11864141_INS [dm6]	C	CGTTCTGTTC	9.755e^-11	4.031e^-7	UPSTREAM CG44837 INTRON CG44837
3L	11857702	3L_11857702_SNP [dm3] 3L_11864602_SNP [dm6]	T	C	9.755e^-11	4.031e^-7	INTRON CG44837
3L	18024271	3L_18024271_SNP [dm3] 3L_18031171_SNP [dm6]	G	A	9.840e^-11	4.057e^-7	INTRON Eip75B
2L	11494622	2L_11494622_SNP [dm3] 2L_11494622_SNP [dm6]	C	T	1.019e^-10	4.192e^-7	INTERGENIC
3L	22383675	3L_22383675_SNP [dm3] 3L_22390575_SNP [dm6]	A	G	1.041e^-10	4.273e^-7	INTRON Ten-m
2L	10466474	2L_10466474_SNP [dm3] 2L_10466474_SNP [dm6]	C	A	1.098e^-10	4.496e^-7	INTRON RluA-1
2L	19821096	2L_19821096_SNP [dm3] 2L_19821096_SNP [dm6]	G	T	1.100e^-10	4.496e^-7	INTRON sick	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9356208	2R_9356208_SNP [dm3] 2R_13468703_SNP [dm6]	T	A	1.120e^-10	4.565e^-7	INTRON arr
2L	4831505	2L_4831505_SNP [dm3] 2L_4831505_SNP [dm6]	A	G	1.126e^-10	4.581e^-7	SYNONYMOUS_CODING Ir25a UPSTREAM CG2976	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14251606	X_14251606_SNP [dm3] X_14357573_SNP [dm6]	G	A	1.144e^-10	4.646e^-7	INTRON dpr8
2L	16044912	2L_16044912_SNP [dm3] 2L_16044912_SNP [dm6]	A	C	1.148e^-10	4.650e^-7	INTRON BicC & 1 other
2R	9332161	2R_9332161_SNP [dm3] 2R_13444656_SNP [dm6]	G	A	1.171e^-10	4.733e^-7	SYNONYMOUS_CODING cnn	TF binding site mE1_TFBS_HSA
3L	22429715	3L_22429715_SNP [dm3] 3L_22436615_SNP [dm6]	A	G	1.195e^-10	4.819e^-7	INTERGENIC
2L	3441573	2L_3441573_SNP [dm3] 2L_3441573_SNP [dm6]	G	T	1.207e^-10	4.839e^-7	INTERGENIC
3R	24767293	3R_24767293_SNP [dm3] 3R_28941571_SNP [dm6]	A	T	1.207e^-10	4.839e^-7	INTRON CG14521
3R	25647282	3R_25647282_SNP [dm3] 3R_29821560_SNP [dm6]	G	T	1.207e^-10	4.839e^-7	INTRON neo
3R	24515478	3R_24515478_SNP [dm3] 3R_28689756_SNP [dm6]	A	G	1.226e^-10	4.903e^-7	INTRON CG9990
3L	22326661	3L_22326661_SNP [dm3] 3L_22333561_SNP [dm6]	G	A	1.269e^-10	5.065e^-7	INTRON Ten-m
X	14488999	X_14488999_SNP [dm3] X_14594966_SNP [dm6]	G	A	1.304e^-10	5.191e^-7	INTRON CG9413
3L	11856905	3L_11856905_SNP [dm3] 3L_11863805_SNP [dm6]	T	A	1.333e^-10	5.286e^-7	UPSTREAM CG44837 INTRON CG44837
3L	11856979	3L_11856979_DEL [dm3] 3L_11863879_DEL [dm6]	TCTGAA	T	1.333e^-10	5.286e^-7	UPSTREAM CG44837 INTRON CG44837
2L	1747551	2L_1747551_SNP [dm3] 2L_1747551_SNP [dm6]	G	A	1.356e^-10	5.364e^-7	INTRON CG17646	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14555496	X_14555496_SNP [dm3] X_14661463_SNP [dm6]	T	C	1.381e^-10	5.453e^-7	INTERGENIC
3L	11856875	3L_11856875_SNP [dm3] 3L_11863775_SNP [dm6]	A	G	1.426e^-10	5.618e^-7	UPSTREAM CG44837 INTRON CG44837
X	20691356	X_20691356_SNP [dm3] X_20820329_SNP [dm6]	C	T	1.460e^-10	5.741e^-7	INTRON shakB
3R	9286790	3R_9286790_SNP [dm3] 3R_13461068_SNP [dm6]	T	C	1.523e^-10	5.974e^-7	SYNONYMOUS_CODING CG14372 INTRON CR17025	TF binding site mE1_TFBS_cad
3L	18394600	3L_18394600_SNP [dm3] 3L_18401500_SNP [dm6]	T	C	1.544e^-10	6.043e^-7	INTERGENIC	regulatory region REDfly_CRMs
3L	11771422	3L_11771422_SNP [dm3] 3L_11778322_SNP [dm6]	G	C	1.551e^-10	6.057e^-7	INTRON Pi3K68D & 1 other	TF binding site mE1_TFBS_cad
2L	10655978	2L_10655978_SNP [dm3] 2L_10655978_SNP [dm6]	T	A	1.588e^-10	6.190e^-7	INTERGENIC
2L	1747549	2L_1747549_SNP [dm3] 2L_1747549_SNP [dm6]	G	A	1.625e^-10	6.312e^-7	INTRON CG17646	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13434648	X_13434648_SNP [dm3] X_13540615_SNP [dm6]	G	A	1.626e^-10	6.312e^-7	INTERGENIC
2R	12109905	2R_12109905_SNP [dm3] 2R_16222400_SNP [dm6]	A	G	1.635e^-10	6.336e^-7	SYNONYMOUS_CODING CG7798 UPSTREAM mrj DOWNSTREAM CG15706 EXON CR43898	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	7202946	2L_7202946_SNP [dm3] 2L_7202946_SNP [dm6]	G	A	1.699e^-10	6.537e^-7	INTRON CG4502
2L	2671936	2L_2671936_SNP [dm3] 2L_2671936_SNP [dm6]	T	C	1.699e^-10	6.537e^-7	SYNONYMOUS_CODING Gr23a
2R	19319619	2R_19319619_SNP [dm3] 2R_23432096_SNP [dm6]	C	T	1.700e^-10	6.537e^-7	UPSTREAM CG9815 INTRON CG9815
3L	11781454	3L_11781454_SNP [dm3] 3L_11788354_SNP [dm6]	T	A	1.709e^-10	6.537e^-7	INTRON Pi3K68D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11781455	3L_11781455_SNP [dm3] 3L_11788355_SNP [dm6]	T	A	1.709e^-10	6.537e^-7	INTRON Pi3K68D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11781463	3L_11781463_SNP [dm3] 3L_11788363_SNP [dm6]	G	T	1.709e^-10	6.537e^-7	INTRON Pi3K68D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	22321101	3L_22321101_INS [dm3] 3L_22328001_INS [dm6]	T	TTGT	1.768e^-10	6.750e^-7	INTRON Ten-m	TF binding site mE1_TFBS_cad
2L	3442907	2L_3442907_SNP [dm3] 2L_3442907_SNP [dm6]	A	G	1.780e^-10	6.783e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
3R	9660167	3R_9660167_SNP [dm3] 3R_13834445_SNP [dm6]	T	A	1.792e^-10	6.816e^-7	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2
2R	16955172	2R_16955172_SNP [dm3] 2R_21067667_SNP [dm6]	T	G	1.870e^-10	7.096e^-7	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
2R	7909706	2R_7909706_SNP [dm3] 2R_12022201_SNP [dm6]	T	A	1.886e^-10	7.123e^-7	DOWNSTREAM CG8964 INTERGENIC	TF binding site mE1_TFBS_cad
2R	7909757	2R_7909757_SNP [dm3] 2R_12022252_SNP [dm6]	T	A	1.886e^-10	7.123e^-7	DOWNSTREAM CG8964 INTERGENIC	TF binding site mE1_TFBS_cad
3L	11856903	3L_11856903_SNP [dm3] 3L_11863803_SNP [dm6]	A	T	1.889e^-10	7.123e^-7	UPSTREAM CG44837 INTRON CG44837
3R	24515601	3R_24515601_SNP [dm3] 3R_28689879_SNP [dm6]	C	T	2.112e^-10	7.948e^-7	INTRON CG9990
2L	19768462	2L_19768462_SNP [dm3] 2L_19768462_SNP [dm6]	T	A	2.142e^-10	8.046e^-7	INTRON bsh	TF binding site mE1_TFBS_cad
3L	22416945	3L_22416945_SNP [dm3] 3L_22423845_SNP [dm6]	G	T	2.160e^-10	8.097e^-7	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13434567	X_13434567_SNP [dm3] X_13540534_SNP [dm6]	A	G	2.265e^-10	8.474e^-7	INTERGENIC
3R	4713125	3R_4713125_DEL [dm3] 3R_8887403_DEL [dm6]	GTGCAG	G	2.332e^-10	8.709e^-7	INTRON pyd
2R	8892150	2R_8892150_SNP [dm3] 2R_13004645_SNP [dm6]	T	C	2.387e^-10	8.896e^-7	INTRON Su_z_2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9357240	2R_9357240_SNP [dm3] 2R_13469735_SNP [dm6]	A	C	2.398e^-10	8.919e^-7	INTRON arr
3L	13730592	3L_13730592_SNP [dm3] 3L_13737492_SNP [dm6]	A	G	2.489e^-10	9.237e^-7	INTRON bru-3
2R	3796709	2R_3796709_SNP [dm3] 2R_7909204_SNP [dm6]	G	A	2.525e^-10	9.354e^-7	INTRON CG30377	TF binding site mE1_TFBS_cad
X	1723957	X_1723957_SNP [dm3] X_1829924_SNP [dm6]	A	C	2.557e^-10	9.451e^-7	INTRON CG42666
3R	25642462	3R_25642462_SNP [dm3] 3R_29816740_SNP [dm6]	T	G	2.569e^-10	9.478e^-7	UTR_3_PRIME CG7829 UPSTREAM Vps16B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2681191	2L_2681191_SNP [dm3] 2L_2681191_SNP [dm6]	A	G	2.610e^-10	9.612e^-7	INTRON CG31690
3L	1793920	3L_1793920_SNP [dm3] 3L_1793920_SNP [dm6]	C	T	2.726e^-10	1.002e^-6	INTRON alpha-Spec & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	2302555	3L_2302555_SNP [dm3] 3L_2302555_SNP [dm6]	G	C	2.840e^-10	1.042e^-6	INTERGENIC
3L	2664481	3L_2664481_SNP [dm3] 3L_2664481_SNP [dm6]	C	T	2.853e^-10	1.044e^-6	DOWNSTREAM CG33234 INTRON Fife
3R	19310994	3R_19310994_SNP [dm3] 3R_23485272_SNP [dm6]	C	A	2.857e^-10	1.044e^-6	SYNONYMOUS_CODING Ir94g UPSTREAM CR44324	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24972325	3R_24972325_SNP [dm3] 3R_29146603_SNP [dm6]	G	A	2.865e^-10	1.045e^-6	SYNONYMOUS_CODING CG14511 DOWNSTREAM CG14516 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	6209753	3L_6209753_SNP [dm3] 3L_6216653_SNP [dm6]	T	A	2.879e^-10	1.048e^-6	INTRON LanA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19403020	3R_19403020_INS [dm3] 3R_23577298_INS [dm6]	G	TT	2.889e^-10	1.049e^-6	INTRON beat-IV
3L	11309190	3L_11309190_SNP [dm3] 3L_11316090_SNP [dm6]	A	T	3.004e^-10	1.089e^-6	EXON CR44361	TF binding site BDTNP1_TFBS_twi
3L	6224135	3L_6224135_SNP [dm3] 3L_6231035_SNP [dm6]	T	A	3.064e^-10	1.106e^-6	DOWNSTREAM CG13299 INTERGENIC
3L	6224155	3L_6224155_SNP [dm3] 3L_6231055_SNP [dm6]	T	A	3.064e^-10	1.106e^-6	DOWNSTREAM CG13299 INTERGENIC
2R	10578770	2R_10578770_SNP [dm3] 2R_14691265_SNP [dm6]	C	G	3.080e^-10	1.110e^-6	INTRON mspo
3R	9870689	3R_9870689_SNP [dm3] 3R_14044967_SNP [dm6]	T	C	3.189e^-10	1.147e^-6	UPSTREAM tRNA:S2b:88A INTERGENIC
3R	9710879	3R_9710879_SNP [dm3] 3R_13885157_SNP [dm6]	G	A	3.342e^-10	1.200e^-6	INTERGENIC
3L	15868332	3L_15868332_SNP [dm3] 3L_15875232_SNP [dm6]	G	A	3.385e^-10	1.211e^-6	DOWNSTREAM CR44051 INTRON pHCl
3L	11777379	3L_11777379_SNP [dm3] 3L_11784279_SNP [dm6]	A	G	3.387e^-10	1.211e^-6	SYNONYMOUS_CODING Pi3K68D
2R	1878193	2R_1878193_SNP [dm3] 2R_5990688_SNP [dm6]	C	A	3.416e^-10	1.219e^-6	INTRON Src42A	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	7781627	2L_7781627_SNP [dm3] 2L_7781627_SNP [dm6]	G	A	3.467e^-10	1.233e^-6	UTR_5_PRIME CG7164 DOWNSTREAM Uro	TF binding site mE1_TFBS_cad
3L	7252494	3L_7252494_SNP [dm3] 3L_7259394_SNP [dm6]	T	C	3.469e^-10	1.233e^-6	INTRON CG14830
3L	729249	3L_729249_SNP [dm3] 3L_729249_SNP [dm6]	C	T	3.476e^-10	1.234e^-6	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18816626	X_18816626_SNP [dm3] X_18922593_SNP [dm6]	G	T	3.493e^-10	1.237e^-6	INTERGENIC
3R	19469820	3R_19469820_SNP [dm3] 3R_23644098_SNP [dm6]	T	G	3.526e^-10	1.246e^-6	INTRON CG31145
3L	1793885	3L_1793885_SNP [dm3] 3L_1793885_SNP [dm6]	A	G	3.530e^-10	1.246e^-6	INTRON alpha-Spec & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	10777892	3L_10777892_SNP [dm3] 3L_10784792_SNP [dm6]	C	T	3.605e^-10	1.270e^-6	INTRON CR44544
3R	24515505	3R_24515505_SNP [dm3] 3R_28689783_SNP [dm6]	T	G	3.680e^-10	1.294e^-6	INTRON CG9990
2L	7621233	2L_7621233_SNP [dm3] 2L_7621233_SNP [dm6]	A	C	3.767e^-10	1.319e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14529286	X_14529286_SNP [dm3] X_14635253_SNP [dm6]	G	A	3.767e^-10	1.319e^-6	INTRON NetA
2R	19309564	2R_19309564_SNP [dm3] 2R_23422041_SNP [dm6]	G	A	3.774e^-10	1.319e^-6	SYNONYMOUS_CODING CG9815	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24514966	3R_24514966_SNP [dm3] 3R_28689244_SNP [dm6]	C	T	3.974e^-10	1.387e^-6	UPSTREAM CG9990 INTRON CG9990
3R	24972193	3R_24972193_SNP [dm3] 3R_29146471_SNP [dm6]	G	T	3.984e^-10	1.387e^-6	NON_SYNONYMOUS_CODING CG14511 DOWNSTREAM CG14516 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	6010654	3R_6010654_SNP [dm3] 3R_10184932_SNP [dm6]	T	C	4.003e^-10	1.391e^-6	INTRON CG12814	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	19311287	3R_19311287_SNP [dm3] 3R_23485565_SNP [dm6]	C	T	4.018e^-10	1.394e^-6	DOWNSTREAM Ir94g EXON CR44324	TF binding site mE1_TFBS_HSA
3L	2513951	3L_2513951_SNP [dm3] 3L_2513951_SNP [dm6]	G	C	4.045e^-10	1.401e^-6	NON_SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14702840	3R_14702840_SNP [dm3] 3R_18877118_SNP [dm6]	T	A	4.057e^-10	1.402e^-6	UTR_3_PRIME CG14298
2L	11149147	2L_11149147_SNP [dm3] 2L_11149147_SNP [dm6]	A	C	4.101e^-10	1.412e^-6	UPSTREAM Gyc32E INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	11149150	2L_11149150_SNP [dm3] 2L_11149150_SNP [dm6]	G	T	4.101e^-10	1.412e^-6	UPSTREAM Gyc32E INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	16098775	2R_16098775_SNP [dm3] 2R_20211270_SNP [dm6]	T	A	4.135e^-10	1.421e^-6	DOWNSTREAM CG16894 INTERGENIC
2R	19309221	2R_19309221_SNP [dm3] 2R_23421698_SNP [dm6]	G	T	4.200e^-10	1.428e^-6	UTR_3_PRIME CG9815	TF binding site mE1_TFBS_chinmo
2R	17459341	2R_17459341_SNP [dm3] 2R_21571836_SNP [dm6]	G	A	4.208e^-10	1.428e^-6	UPSTREAM CG10440 INTRON CG10440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10719504	3L_10719504_SNP [dm3] 3L_10726404_SNP [dm6]	T	C	4.208e^-10	1.428e^-6	INTERGENIC	insulator Insulator_Class_II.mE01
3L	13055531	3L_13055531_SNP [dm3] 3L_13062431_SNP [dm6]	C	A	4.208e^-10	1.428e^-6	SYNONYMOUS_CODING CG34428 UPSTREAM CG34429	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12302857	X_12302857_SNP [dm3] X_12408824_SNP [dm6]	T	C	4.208e^-10	1.428e^-6	UPSTREAM CG2574 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13161222	X_13161222_SNP [dm3] X_13267189_SNP [dm6]	G	A	4.208e^-10	1.428e^-6	SYNONYMOUS_CODING HDAC4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14529827	X_14529827_SNP [dm3] X_14635794_SNP [dm6]	G	A	4.208e^-10	1.428e^-6	INTRON NetA	TF binding site mE1_TFBS_Kr
2L	3595349	2L_3595349_SNP [dm3] 2L_3595349_SNP [dm6]	C	A	4.260e^-10	1.443e^-6	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14618561	2R_14618561_SNP [dm3] 2R_18731056_SNP [dm6]	A	G	4.422e^-10	1.495e^-6	UPSTREAM List INTRON Hs3st-A
X	10960396	X_10960396_SNP [dm3] X_11066363_SNP [dm6]	C	A	4.452e^-10	1.502e^-6	UPSTREAM CG15203 EXON CR45614
3L	22318843	3L_22318843_SNP [dm3] 3L_22325743_SNP [dm6]	G	A	4.782e^-10	1.611e^-6	INTRON Ten-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	26105265	3R_26105265_SNP [dm3] 3R_30279543_SNP [dm6]	C	T	4.815e^-10	1.619e^-6	SYNONYMOUS_CODING hdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22395704	3L_22395704_SNP [dm3] 3L_22402604_SNP [dm6]	G	C	4.853e^-10	1.629e^-6	INTRON Ten-m	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	5655751	X_5655751_SNP [dm3] X_5761718_SNP [dm6]	T	A	4.943e^-10	1.656e^-6	INTRON MAPk-Ak2
3L	18036765	3L_18036765_SNP [dm3] 3L_18043665_SNP [dm6]	T	G	4.960e^-10	1.659e^-6	UTR_3_PRIME CG42393 INTRON Eip75B
3L	9902695	3L_9902695_SNP [dm3] 3L_9909595_SNP [dm6]	A	T	5.027e^-10	1.678e^-6	INTRON CG34356
3L	15742248	3L_15742248_SNP [dm3] 3L_15749148_SNP [dm6]	C	A	5.111e^-10	1.703e^-6	DOWNSTREAM CR45240 INTERGENIC
2R	13538856	2R_13538856_SNP [dm3] 2R_17651351_SNP [dm6]	G	A	5.120e^-10	1.703e^-6	SYNONYMOUS_CODING CCHa1-R	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4821468	2L_4821468_INS [dm3] 2L_4821468_INS [dm6]	T	TC	5.170e^-10	1.717e^-6	UPSTREAM CG15628 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5669701	3L_5669701_SNP [dm3] 3L_5676601_SNP [dm6]	C	A	5.260e^-10	1.744e^-6	SYNONYMOUS_CODING sif
3R	11976615	3R_11976615_SNP [dm3] 3R_16150893_SNP [dm6]	C	G	5.323e^-10	1.761e^-6	INTRON Fer2	TF binding site BDTNP1_TFBS_dl
3L	5371871	3L_5371871_SNP [dm3] 3L_5378771_SNP [dm6]	T	A	5.378e^-10	1.776e^-6	DOWNSTREAM Ir64a & 1 other INTERGENIC
3R	20827575	3R_20827575_SNP [dm3] 3R_25001853_SNP [dm6]	A	C	5.555e^-10	1.832e^-6	INTRON tnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	19309558	2R_19309558_SNP [dm3] 2R_23422035_SNP [dm6]	C	A	5.683e^-10	1.870e^-6	NON_SYNONYMOUS_CODING CG9815	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13055352	3L_13055352_SNP [dm3] 3L_13062252_SNP [dm6]	T	C	5.770e^-10	1.896e^-6	SYNONYMOUS_CODING CG34428 UPSTREAM CG14115 & 1 other	TF binding site mE1_TFBS_sens
3R	21264525	3R_21264525_SNP [dm3] 3R_25438803_SNP [dm6]	G	A	5.799e^-10	1.899e^-6	INTRON Fur1
X	13161276	X_13161276_SNP [dm3] X_13267243_SNP [dm6]	C	T	5.799e^-10	1.899e^-6	SYNONYMOUS_CODING HDAC4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10199565	2L_10199565_SNP [dm3] 2L_10199565_SNP [dm6]	A	G	5.831e^-10	1.906e^-6	UTR_3_PRIME Ripalpha UPSTREAM Sur	TF binding site mE1_TFBS_HSA
3L	22510216	3L_22510216_SNP [dm3] 3L_22517116_SNP [dm6]	T	A	5.920e^-10	1.928e^-6	INTERGENIC
2L	3785674	2L_3785674_INS [dm3] 2L_3785674_INS [dm6]	A	ACTGTGCGTGAG...	5.921e^-10	1.928e^-6	UPSTREAM CG31958 DOWNSTREAM CG31960 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	3467508	2L_3467508_SNP [dm3] 2L_3467508_SNP [dm6]	A	G	6.117e^-10	1.989e^-6	UTR_3_PRIME CG3238 DOWNSTREAM Pdsw
2L	15305206	2L_15305206_INS [dm3] 2L_15305206_INS [dm6]	C	CATAC	6.138e^-10	1.992e^-6	INTERGENIC
2R	16098939	2R_16098939_DEL [dm3] 2R_20211434_DEL [dm6]	CCC	C	6.257e^-10	2.026e^-6	DOWNSTREAM CG16894 INTERGENIC
2L	5418951	2L_5418951_SNP [dm3] 2L_5418951_SNP [dm6]	C	T	6.266e^-10	2.026e^-6	INTERGENIC
2L	5423732	2L_5423732_SNP [dm3] 2L_5423732_SNP [dm6]	G	A	6.476e^-10	2.091e^-6	INTERGENIC
3L	22691914	3L_22691914_SNP [dm3] 3L_22698814_SNP [dm6]	G	T	6.648e^-10	2.142e^-6	UPSTREAM CG45116 DOWNSTREAM CG32453 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	18012871	3L_18012871_SNP [dm3] 3L_18019771_SNP [dm6]	T	A	7.230e^-10	2.323e^-6	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	18392078	3L_18392078_SNP [dm3] 3L_18398978_SNP [dm6]	A	G	7.232e^-10	2.323e^-6	UPSTREAM rpr INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	18538544	2R_18538544_SNP [dm3] 2R_22651039_SNP [dm6]	G	A	7.668e^-10	2.458e^-6	INTRON nsr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13761447	3R_13761447_SNP [dm3] 3R_17935725_SNP [dm6]	A	G	7.733e^-10	2.475e^-6	INTRON cpo
3R	19588373	3R_19588373_SNP [dm3] 3R_23762651_SNP [dm6]	A	T	7.751e^-10	2.477e^-6	SYNONYMOUS_CODING CG10217	TF binding site mE1_TFBS_sens
2L	10223895	2L_10223895_SNP [dm3] 2L_10223895_SNP [dm6]	C	T	7.831e^-10	2.498e^-6	SYNONYMOUS_CODING CG4908 DOWNSTREAM CG5708	TF binding site mE1_TFBS_sens
2L	13462401	2L_13462401_SNP [dm3] 2L_13462401_SNP [dm6]	A	T	7.919e^-10	2.521e^-6	INTRON CG42784	TF binding site mE1_TFBS_inv
3L	14045158	3L_14045158_SNP [dm3] 3L_14052058_SNP [dm6]	C	T	7.986e^-10	2.530e^-6	SYNONYMOUS_CODING CG6833 DOWNSTREAM CG13484	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	21976791	X_21976791_SNP [dm3] X_22574955_SNP [dm6]	C	T	7.987e^-10	2.530e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21976804	X_21976804_SNP [dm3] X_22574968_SNP [dm6]	C	T	7.987e^-10	2.530e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17078688	X_17078688_SNP [dm3] X_17184655_SNP [dm6]	C	T	8.219e^-10	2.599e^-6	INTRON baz
3R	21264679	3R_21264679_SNP [dm3] 3R_25438957_SNP [dm6]	G	T	8.627e^-10	2.724e^-6	INTRON Fur1
3R	26472566	3R_26472566_SNP [dm3] 3R_30646844_SNP [dm6]	T	A	8.789e^-10	2.765e^-6	SPLICE_SITE_REGION PH4alphaPV UPSTREAM CG31013 INTRON PH4alphaPV	TF binding site mE1_TFBS_HSA
3R	26472580	3R_26472580_SNP [dm3] 3R_30646858_SNP [dm6]	G	T	8.789e^-10	2.765e^-6	UPSTREAM CG31013 INTRON PH4alphaPV	TF binding site mE1_TFBS_HSA
2R	18077171	2R_18077171_INS [dm3] 2R_22189666_INS [dm6]	A	AATTATACAA	8.841e^-10	2.777e^-6	UTR_3_PRIME Vps35 DOWNSTREAM Swim	TF binding site mE1_TFBS_cad
2L	14182375	2L_14182375_SNP [dm3] 2L_14182375_SNP [dm6]	T	C	9.872e^-10	3.096e^-6	INTERGENIC
3R	25647074	3R_25647074_SNP [dm3] 3R_29821352_SNP [dm6]	G	A	1.060e^-9	3.319e^-6	INTRON neo
2L	19604720	2L_19604720_SNP [dm3] 2L_19604720_SNP [dm6]	T	C	1.075e^-9	3.360e^-6	INTRON Lar & 1 other
2R	3618765	2R_3618765_SNP [dm3] 2R_7731260_SNP [dm6]	T	G	1.088e^-9	3.396e^-6	INTRON CG18812
2R	16992649	2R_16992649_SNP [dm3] 2R_21105144_SNP [dm6]	T	A	1.107e^-9	3.448e^-6	INTRON ktub	TF binding site mE1_TFBS_inv
3R	11773066	3R_11773066_SNP [dm3] 3R_15947344_SNP [dm6]	C	G	1.118e^-9	3.476e^-6	INTRON Sap47
2R	3732384	2R_3732384_SNP [dm3] 2R_7844879_SNP [dm6]	T	C	1.197e^-9	3.716e^-6	SPLICE_SITE_REGION Dgk INTRON Dgk
3L	18052499	3L_18052499_SNP [dm3] 3L_18059399_SNP [dm6]	G	C	1.210e^-9	3.749e^-6	NON_SYNONYMOUS_CODING Eip75B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	22439123	3R_22439123_SNP [dm3] 3R_26613401_SNP [dm6]	A	G	1.213e^-9	3.755e^-6	INTERGENIC
3L	18030035	3L_18030035_SNP [dm3] 3L_18036935_SNP [dm6]	C	A	1.219e^-9	3.760e^-6	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12973853	2R_12973853_SNP [dm3] 2R_17086348_SNP [dm6]	C	T	1.219e^-9	3.760e^-6	INTRON CG30460
3R	21313806	3R_21313806_SNP [dm3] 3R_25488084_SNP [dm6]	A	G	1.228e^-9	3.780e^-6	SYNONYMOUS_CODING Dhap-at	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3919678	3L_3919678_INS [dm3] 3L_3919678_INS [dm6]	T	TC	1.301e^-9	4.000e^-6	INTRON Eip63F-1
3R	23725111	3R_23725111_SNP [dm3] 3R_27899389_SNP [dm6]	C	T	1.306e^-9	4.007e^-6	INTRON CG34353
3R	22439147	3R_22439147_SNP [dm3] 3R_26613425_SNP [dm6]	G	A	1.318e^-9	4.039e^-6	INTERGENIC
3R	4457155	3R_4457155_SNP [dm3] 3R_8631433_SNP [dm6]	A	G	1.365e^-9	4.175e^-6	INTERGENIC
3R	19283727	3R_19283727_SNP [dm3] 3R_23458005_SNP [dm6]	A	T	1.375e^-9	4.197e^-6	INTRON CG4374	TF binding site mE1_TFBS_chinmo
2R	13445064	2R_13445064_DEL [dm3] 2R_17557559_DEL [dm6]	CGGC	C	1.480e^-9	4.512e^-6	INTRON Klp54D
3L	14286410	3L_14286410_SNP [dm3] 3L_14293310_SNP [dm6]	G	T	1.575e^-9	4.794e^-6	INTRON fz
3L	5145474	3L_5145474_SNP [dm3] 3L_5152374_SNP [dm6]	C	T	1.624e^-9	4.935e^-6	UTR_5_PRIME Gen UPSTREAM Srp54k	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
2L	19755778	2L_19755778_SNP [dm3] 2L_19755778_SNP [dm6]	A	T	1.672e^-9	5.056e^-6	INTRON CG10631	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	19755781	2L_19755781_SNP [dm3] 2L_19755781_SNP [dm6]	G	A	1.672e^-9	5.056e^-6	INTRON CG10631	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	19755802	2L_19755802_SNP [dm3] 2L_19755802_SNP [dm6]	T	A	1.672e^-9	5.056e^-6	INTRON CG10631	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	11913159	2L_11913159_SNP [dm3] 2L_11913159_SNP [dm6]	G	C	1.721e^-9	5.196e^-6	INTRON Pde1c
2R	14180612	2R_14180612_DEL [dm3] 2R_18293107_DEL [dm6]	TCAACTCAACT...	T	1.765e^-9	5.320e^-6	UTR_5_PRIME CG14502 UPSTREAM CG14502 INTRON CG14502 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	10553784	3R_10553784_SNP [dm3] 3R_14728062_SNP [dm6]	T	A	1.842e^-9	5.543e^-6	INTRON CG7530
3L	16011031	3L_16011031_SNP [dm3] 3L_16017931_SNP [dm6]	T	C	1.926e^-9	5.787e^-6	EXON CR43950	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	19756147	2L_19756147_SNP [dm3] 2L_19756147_SNP [dm6]	C	A	2.047e^-9	6.140e^-6	NON_SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_HSA
2L	11489573	2L_11489573_SNP [dm3] 2L_11489573_SNP [dm6]	T	C	2.085e^-9	6.244e^-6	INTERGENIC
3R	17683444	3R_17683444_SNP [dm3] 3R_21857722_SNP [dm6]	C	A	2.141e^-9	6.399e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	6224419	3L_6224419_SNP [dm3] 3L_6231319_SNP [dm6]	A	C	2.158e^-9	6.440e^-6	DOWNSTREAM CG13299 INTERGENIC
3L	12329410	3L_12329410_SNP [dm3] 3L_12336310_SNP [dm6]	G	A	2.205e^-9	6.571e^-6	UPSTREAM CG10418 DOWNSTREAM CG32105 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	9401076	2R_9401076_SNP [dm3] 2R_13513571_SNP [dm6]	T	A	2.328e^-9	6.926e^-6	UTR_3_PRIME Vmat DOWNSTREAM mip120
3L	3147153	3L_3147153_SNP [dm3] 3L_3147153_SNP [dm6]	A	G	2.485e^-9	7.382e^-6	SYNONYMOUS_CODING CG12082	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	6212800	3L_6212800_SNP [dm3] 3L_6219700_SNP [dm6]	C	T	2.751e^-9	8.158e^-6	UPSTREAM pncr008:3L INTERGENIC	TF binding site mE1_TFBS_HSA
3R	20300764	3R_20300764_SNP [dm3] 3R_24475042_SNP [dm6]	G	A	2.868e^-9	8.493e^-6	INTERGENIC
2L	945017	2L_945017_SNP [dm3] 2L_945017_SNP [dm6]	G	T	2.927e^-9	8.653e^-6	INTRON CG4341
2R	19316913	2R_19316913_SNP [dm3] 2R_23429390_SNP [dm6]	A	C	2.976e^-9	8.784e^-6	INTRON CG9815
X	14555636	X_14555636_SNP [dm3] X_14661603_SNP [dm6]	T	C	3.079e^-9	9.073e^-6	INTERGENIC	insulator Insulator_Class_II.mE01
3L	9902171	3L_9902171_SNP [dm3] 3L_9909071_SNP [dm6]	T	A	3.118e^-9	9.173e^-6	INTRON CG34356
3L	6224423	3L_6224423_SNP [dm3] 3L_6231323_SNP [dm6]	T	A	3.205e^-9	9.415e^-6	DOWNSTREAM CG13299 INTERGENIC
2R	3573982	2R_3573982_SNP [dm3] 2R_7686477_SNP [dm6]	T	G	3.298e^-9	9.674e^-6	INTRON CG1399
2R	16488699	2R_16488699_SNP [dm3] 2R_20601194_SNP [dm6]	C	T	3.368e^-9	9.862e^-6	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19714402	2L_19714402_SNP [dm3] 2L_19714402_SNP [dm6]	G	T	3.524e^-9	1.030e^-5	INTRON Lar
2R	19321261	2R_19321261_SNP [dm3] 2R_23433738_SNP [dm6]	C	T	3.590e^-9	1.048e^-5	UPSTREAM CG9815 INTERGENIC
2L	19714342	2L_19714342_SNP [dm3] 2L_19714342_SNP [dm6]	G	A	3.652e^-9	1.064e^-5	INTRON Lar
3R	23007983	3R_23007983_SNP [dm3] 3R_27182261_SNP [dm6]	T	G	3.697e^-9	1.076e^-5	INTRON Ser
2L	19759341	2L_19759341_SNP [dm3] 2L_19759341_SNP [dm6]	A	G	3.893e^-9	1.131e^-5	SYNONYMOUS_CODING CG10463 UPSTREAM CG10628	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11326703	2R_11326703_SNP [dm3] 2R_15439198_SNP [dm6]	G	A	3.915e^-9	1.134e^-5	INTRON CG43729
2R	11326895	2R_11326895_SNP [dm3] 2R_15439390_SNP [dm6]	G	A	3.915e^-9	1.134e^-5	INTRON CG43729
3R	21687296	3R_21687296_SNP [dm3] 3R_25861574_SNP [dm6]	A	G	3.977e^-9	1.150e^-5	INTRON CG5890
3L	22158612	3L_22158612_SNP [dm3] 3L_22165512_SNP [dm6]	C	T	4.042e^-9	1.167e^-5	INTRON olf413	TF binding site mE1_TFBS_chinmo mE1_TFBS_Kr
3L	6212195	3L_6212195_SNP [dm3] 3L_6219095_SNP [dm6]	A	C	4.105e^-9	1.184e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10397197	3L_10397197_SNP [dm3] 3L_10404097_SNP [dm6]	G	T	4.140e^-9	1.192e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7818576	3L_7818576_SNP [dm3] 3L_7825476_SNP [dm6]	T	G	4.198e^-9	1.207e^-5	INTRON Pdp1
2R	9356209	2R_9356209_SNP [dm3] 2R_13468704_SNP [dm6]	T	C	4.207e^-9	1.207e^-5	INTRON arr
2L	10750684	2L_10750684_SNP [dm3] 2L_10750684_SNP [dm6]	C	T	4.246e^-9	1.217e^-5	INTRON CG17124
3L	16759454	3L_16759454_DEL [dm3] 3L_16766354_DEL [dm6]	AA	A	4.291e^-9	1.228e^-5	UTR_5_PRIME Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20680359	2L_20680359_SNP [dm3] 2L_20680359_SNP [dm6]	G	A	4.490e^-9	1.282e^-5	SYNONYMOUS_CODING Cen	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11691604	2R_11691604_SNP [dm3] 2R_15804099_SNP [dm6]	T	C	4.702e^-9	1.341e^-5	INTRON tun & 1 other
2L	3785668	2L_3785668_SNP [dm3] 2L_3785668_SNP [dm6]	T	G	4.792e^-9	1.364e^-5	UPSTREAM CG31958 DOWNSTREAM CG31960 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	14867878	2L_14867878_SNP [dm3] 2L_14867878_SNP [dm6]	A	G	4.825e^-9	1.372e^-5	INTERGENIC
3L	10397188	3L_10397188_SNP [dm3] 3L_10404088_SNP [dm6]	G	A	4.908e^-9	1.393e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	18024224	3L_18024224_SNP [dm3] 3L_18031124_SNP [dm6]	G	C	4.994e^-9	1.416e^-5	INTRON Eip75B
3L	13180028	3L_13180028_SNP [dm3] 3L_13186928_SNP [dm6]	A	G	5.060e^-9	1.432e^-5	INTERGENIC
2L	18413646	2L_18413646_SNP [dm3] 2L_18413646_SNP [dm6]	T	A	5.098e^-9	1.441e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9359875	2R_9359875_SNP [dm3] 2R_13472370_SNP [dm6]	C	G	5.765e^-9	1.627e^-5	INTRON arr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16041900	2L_16041900_SNP [dm3] 2L_16041900_SNP [dm6]	T	C	5.806e^-9	1.634e^-5	UPSTREAM BicC & 1 other DOWNSTREAM beat-Ic INTERGENIC
3L	10398350	3L_10398350_SNP [dm3] 3L_10405250_SNP [dm6]	T	G	5.913e^-9	1.634e^-5	INTERGENIC
2R	2967199	2R_2967199_SNP [dm3] 2R_7079694_SNP [dm6]	A	T	6.102e^-9	1.634e^-5	INTERGENIC
2R	13764267	2R_13764267_SNP [dm3] 2R_17876762_SNP [dm6]	T	C	6.275e^-9	1.634e^-5	DOWNSTREAM CG30325 INTRON Elk
2L	11935848	2L_11935848_SNP [dm3] 2L_11935848_SNP [dm6]	C	T	6.382e^-9	1.634e^-5	UPSTREAM Or33b DOWNSTREAM Or33a INTERGENIC
2R	11588729	2R_11588729_SNP [dm3] 2R_15701224_SNP [dm6]	T	C	6.457e^-9	1.634e^-5	NON_SYNONYMOUS_CODING CG30080 UTR_5_PRIME CG42662	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22150798	3L_22150798_SNP [dm3] 3L_22157698_SNP [dm6]	T	G	6.457e^-9	1.634e^-5	INTRON olf413
3L	22157699	3L_22157699_SNP [dm3] 3L_22164599_SNP [dm6]	C	T	6.457e^-9	1.634e^-5	INTRON olf413	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	22164220	3L_22164220_SNP [dm3] 3L_22171120_SNP [dm6]	T	C	6.457e^-9	1.634e^-5	INTRON olf413	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22164294	3L_22164294_SNP [dm3] 3L_22171194_SNP [dm6]	G	A	6.457e^-9	1.634e^-5	INTRON olf413	TF binding site mE1_TFBS_chinmo
3L	22165315	3L_22165315_SNP [dm3] 3L_22172215_SNP [dm6]	A	T	6.457e^-9	1.634e^-5	INTRON olf413
3L	22165442	3L_22165442_SNP [dm3] 3L_22172342_SNP [dm6]	G	A	6.457e^-9	1.634e^-5	INTRON olf413	insulator Insulator_Class_II.mE01
3L	22170611	3L_22170611_SNP [dm3] 3L_22177511_SNP [dm6]	G	T	6.457e^-9	1.634e^-5	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	22170613	3L_22170613_DEL [dm3] 3L_22177513_DEL [dm6]	AAA	C	6.457e^-9	1.634e^-5	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	22171499	3L_22171499_SNP [dm3] 3L_22178399_SNP [dm6]	C	T	6.457e^-9	1.634e^-5	INTRON olf413
3L	22175482	3L_22175482_SNP [dm3] 3L_22182382_SNP [dm6]	C	G	6.457e^-9	1.634e^-5	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	22179132	3L_22179132_SNP [dm3] 3L_22186032_SNP [dm6]	G	T	6.457e^-9	1.634e^-5	INTRON olf413
3L	22181304	3L_22181304_SNP [dm3] 3L_22188204_SNP [dm6]	T	C	6.457e^-9	1.634e^-5	INTRON olf413
3L	22183550	3L_22183550_SNP [dm3] 3L_22190450_SNP [dm6]	C	T	6.457e^-9	1.634e^-5	INTRON olf413
3L	22185460	3L_22185460_SNP [dm3] 3L_22192360_SNP [dm6]	T	G	6.457e^-9	1.634e^-5	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22187738	3L_22187738_SNP [dm3] 3L_22194638_SNP [dm6]	A	G	6.457e^-9	1.634e^-5	INTRON olf413
3L	22191706	3L_22191706_SNP [dm3] 3L_22198606_SNP [dm6]	A	G	6.457e^-9	1.634e^-5	INTRON olf413
3L	22193806	3L_22193806_SNP [dm3] 3L_22200706_SNP [dm6]	T	C	6.457e^-9	1.634e^-5	INTRON olf413
3L	22194268	3L_22194268_SNP [dm3] 3L_22201168_SNP [dm6]	A	T	6.457e^-9	1.634e^-5	INTRON olf413
3L	22195908	3L_22195908_SNP [dm3] 3L_22202808_SNP [dm6]	C	G	6.457e^-9	1.634e^-5	INTRON olf413	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	22196354	3L_22196354_SNP [dm3] 3L_22203254_SNP [dm6]	C	T	6.457e^-9	1.634e^-5	INTRON olf413
3L	22197541	3L_22197541_SNP [dm3] 3L_22204441_SNP [dm6]	C	G	6.457e^-9	1.634e^-5	INTRON olf413	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22197659	3L_22197659_SNP [dm3] 3L_22204559_SNP [dm6]	T	A	6.457e^-9	1.634e^-5	INTRON olf413	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22197778	3L_22197778_SNP [dm3] 3L_22204678_SNP [dm6]	G	A	6.457e^-9	1.634e^-5	INTRON olf413	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22198792	3L_22198792_SNP [dm3] 3L_22205692_SNP [dm6]	C	A	6.457e^-9	1.634e^-5	INTRON olf413	TF binding site mE1_TFBS_HSA
3L	22202294	3L_22202294_SNP [dm3] 3L_22209194_SNP [dm6]	T	C	6.457e^-9	1.634e^-5	INTRON olf413	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	22205727	3L_22205727_SNP [dm3] 3L_22212627_SNP [dm6]	G	A	6.457e^-9	1.634e^-5	INTRON olf413
3L	22211739	3L_22211739_DEL [dm3] 3L_22218639_DEL [dm6]	CA	C	6.457e^-9	1.634e^-5	INTRON olf413	TF binding site BDTNP1_TFBS_da
3L	22234877	3L_22234877_SNP [dm3] 3L_22241777_SNP [dm6]	C	T	6.457e^-9	1.634e^-5	INTRON olf413
3L	22235325	3L_22235325_SNP [dm3] 3L_22242225_SNP [dm6]	G	C	6.457e^-9	1.634e^-5	INTRON olf413	TF binding site mE1_TFBS_cad
3L	22236576	3L_22236576_SNP [dm3] 3L_22243476_SNP [dm6]	T	A	6.457e^-9	1.634e^-5	UTR_3_PRIME olf413 DOWNSTREAM olf413
3L	22240231	3L_22240231_SNP [dm3] 3L_22247131_SNP [dm6]	G	A	6.457e^-9	1.634e^-5	UTR_3_PRIME olf413
3L	22242083	3L_22242083_SNP [dm3] 3L_22248983_SNP [dm6]	C	T	6.457e^-9	1.634e^-5	INTERGENIC
3L	22243041	3L_22243041_SNP [dm3] 3L_22249941_SNP [dm6]	T	A	6.457e^-9	1.634e^-5	INTERGENIC
3L	22252083	3L_22252083_SNP [dm3] 3L_22258983_SNP [dm6]	G	A	6.457e^-9	1.634e^-5	NON_SYNONYMOUS_CODING Rich
3L	22252469	3L_22252469_SNP [dm3] 3L_22259369_SNP [dm6]	G	T	6.457e^-9	1.634e^-5	SYNONYMOUS_CODING Rich	TF binding site mE1_TFBS_sens
3L	22252661	3L_22252661_SNP [dm3] 3L_22259561_SNP [dm6]	C	A	6.457e^-9	1.634e^-5	NON_SYNONYMOUS_CODING Rich	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22258985	3L_22258985_SNP [dm3] 3L_22265885_SNP [dm6]	G	C	6.457e^-9	1.634e^-5	UTR_3_PRIME CG11523 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	22262165	3L_22262165_SNP [dm3] 3L_22269065_SNP [dm6]	T	C	6.457e^-9	1.634e^-5	INTRON Csp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22298284	3L_22298284_SNP [dm3] 3L_22305184_SNP [dm6]	C	T	6.457e^-9	1.634e^-5	SYNONYMOUS_CODING Ten-m INTRON Ten-m	TF binding site mE1_TFBS_cad
3L	22346928	3L_22346928_SNP [dm3] 3L_22353828_SNP [dm6]	C	T	6.457e^-9	1.634e^-5	INTRON Ten-m
3L	22353968	3L_22353968_SNP [dm3] 3L_22360868_SNP [dm6]	C	T	6.457e^-9	1.634e^-5	INTRON Ten-m	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	22356776	3L_22356776_SNP [dm3] 3L_22363676_SNP [dm6]	G	A	6.457e^-9	1.634e^-5	INTRON Ten-m	TF binding site mE1_TFBS_sens
3L	22361172	3L_22361172_SNP [dm3] 3L_22368072_SNP [dm6]	C	G	6.457e^-9	1.634e^-5	INTRON Ten-m
3L	22363131	3L_22363131_SNP [dm3] 3L_22370031_SNP [dm6]	A	T	6.457e^-9	1.634e^-5	INTRON Ten-m
3L	22363307	3L_22363307_SNP [dm3] 3L_22370207_SNP [dm6]	G	A	6.457e^-9	1.634e^-5	INTRON Ten-m
3L	22367504	3L_22367504_SNP [dm3] 3L_22374404_SNP [dm6]	C	T	6.457e^-9	1.634e^-5	INTRON Ten-m	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	22367513	3L_22367513_SNP [dm3] 3L_22374413_SNP [dm6]	G	A	6.457e^-9	1.634e^-5	INTRON Ten-m	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	22367518	3L_22367518_SNP [dm3] 3L_22374418_SNP [dm6]	T	A	6.457e^-9	1.634e^-5	INTRON Ten-m	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	22368131	3L_22368131_SNP [dm3] 3L_22375031_SNP [dm6]	A	T	6.457e^-9	1.634e^-5	INTRON Ten-m
3L	22372440	3L_22372440_SNP [dm3] 3L_22379340_SNP [dm6]	G	A	6.457e^-9	1.634e^-5	INTRON Ten-m
3L	22374027	3L_22374027_SNP [dm3] 3L_22380927_SNP [dm6]	A	C	6.457e^-9	1.634e^-5	INTRON Ten-m
3L	22374768	3L_22374768_SNP [dm3] 3L_22381668_SNP [dm6]	C	A	6.457e^-9	1.634e^-5	INTRON Ten-m	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	22376215	3L_22376215_SNP [dm3] 3L_22383115_SNP [dm6]	C	A	6.457e^-9	1.634e^-5	INTRON Ten-m	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	22377210	3L_22377210_SNP [dm3] 3L_22384110_SNP [dm6]	T	A	6.457e^-9	1.634e^-5	INTRON Ten-m	TF binding site BDTNP1_TFBS_twi
3L	22380078	3L_22380078_SNP [dm3] 3L_22386978_SNP [dm6]	T	C	6.457e^-9	1.634e^-5	INTRON Ten-m	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22381784	3L_22381784_SNP [dm3] 3L_22388684_SNP [dm6]	C	A	6.457e^-9	1.634e^-5	INTRON Ten-m	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	22384255	3L_22384255_SNP [dm3] 3L_22391155_SNP [dm6]	G	T	6.457e^-9	1.634e^-5	INTRON Ten-m
3L	22393132	3L_22393132_SNP [dm3] 3L_22400032_SNP [dm6]	T	G	6.457e^-9	1.634e^-5	INTRON Ten-m	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	22396513	3L_22396513_SNP [dm3] 3L_22403413_SNP [dm6]	C	G	6.457e^-9	1.634e^-5	INTRON Ten-m	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	22396764	3L_22396764_SNP [dm3] 3L_22403664_SNP [dm6]	G	T	6.457e^-9	1.634e^-5	INTRON Ten-m	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	22402968	3L_22402968_SNP [dm3] 3L_22409868_SNP [dm6]	C	T	6.457e^-9	1.634e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	22403096	3L_22403096_SNP [dm3] 3L_22409996_SNP [dm6]	C	T	6.457e^-9	1.634e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	22403107	3L_22403107_SNP [dm3] 3L_22410007_SNP [dm6]	A	G	6.457e^-9	1.634e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	22405766	3L_22405766_SNP [dm3] 3L_22412666_SNP [dm6]	A	G	6.457e^-9	1.634e^-5	INTERGENIC
3L	22405895	3L_22405895_SNP [dm3] 3L_22412795_SNP [dm6]	G	A	6.457e^-9	1.634e^-5	INTERGENIC
3L	22410957	3L_22410957_SNP [dm3] 3L_22417857_SNP [dm6]	A	G	6.457e^-9	1.634e^-5	INTERGENIC
3L	22411045	3L_22411045_SNP [dm3] 3L_22417945_SNP [dm6]	C	G	6.457e^-9	1.634e^-5	INTERGENIC
3L	22411097	3L_22411097_SNP [dm3] 3L_22417997_SNP [dm6]	C	T	6.457e^-9	1.634e^-5	INTERGENIC
3L	22411589	3L_22411589_SNP [dm3] 3L_22418489_SNP [dm6]	C	A	6.457e^-9	1.634e^-5	INTERGENIC
3L	22645298	3L_22645298_SNP [dm3] 3L_22652198_SNP [dm6]	C	T	6.457e^-9	1.634e^-5	NON_SYNONYMOUS_CODING CG33772	TF binding site mE1_TFBS_inv
2L	9455261	2L_9455261_SNP [dm3] 2L_9455261_SNP [dm6]	T	A	6.557e^-9	1.657e^-5	INTRON numb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19388174	3L_19388174_SNP [dm3] 3L_19395074_SNP [dm6]	C	T	6.627e^-9	1.672e^-5	INTRON CG32206
2L	19758425	2L_19758425_SNP [dm3] 2L_19758425_SNP [dm6]	T	C	6.656e^-9	1.677e^-5	SYNONYMOUS_CODING CG10628 UPSTREAM CG10463	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	13590336	2R_13590336_INS [dm3] 2R_17702831_INS [dm6]	A	AA	6.752e^-9	1.699e^-5	UPSTREAM snoRNA:snR38:54Ec & 1 other DOWNSTREAM snoRNA:U31:54Eb & 4 others EXON Uhg1
3R	11769220	3R_11769220_SNP [dm3] 3R_15943498_SNP [dm6]	C	A	6.777e^-9	1.703e^-5	INTRON Sap47	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9168913	3L_9168913_DEL [dm3] 3L_9175813_DEL [dm6]	ACGCTATACTA...	A	6.971e^-9	1.749e^-5	INTRON Rdl
3L	22206537	3L_22206537_SNP [dm3] 3L_22213437_SNP [dm6]	C	A	7.060e^-9	1.769e^-5	INTRON olf413
2L	15311992	2L_15311992_DEL [dm3] 2L_15311992_DEL [dm6]	ATCTTAT	A	7.082e^-9	1.772e^-5	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	26727285	3R_26727285_SNP [dm3] 3R_30901563_SNP [dm6]	T	A	7.327e^-9	1.831e^-5	UPSTREAM CG33483 DOWNSTREAM Cyp4c3 INTRON CG33483
2L	11403253	2L_11403253_SNP [dm3] 2L_11403253_SNP [dm6]	T	A	7.445e^-9	1.858e^-5	INTERGENIC	regulatory region REDfly_CRMs
3R	25581197	3R_25581197_SNP [dm3] 3R_29755475_SNP [dm6]	A	G	7.486e^-9	1.866e^-5	DOWNSTREAM yata INTRON CR44953	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10398344	3L_10398344_SNP [dm3] 3L_10405244_SNP [dm6]	A	C	7.543e^-9	1.878e^-5	INTERGENIC
2L	9992764	2L_9992764_SNP [dm3] 2L_9992764_SNP [dm6]	C	G	7.708e^-9	1.916e^-5	INTRON bib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19413076	3L_19413076_SNP [dm3] 3L_19419976_SNP [dm6]	A	G	7.735e^-9	1.920e^-5	INTERGENIC
2R	9359216	2R_9359216_SNP [dm3] 2R_13471711_SNP [dm6]	T	G	7.746e^-9	1.920e^-5	INTRON arr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	22170362	3L_22170362_SNP [dm3] 3L_22177262_SNP [dm6]	T	C	7.761e^-9	1.922e^-5	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	14778636	X_14778636_SNP [dm3] X_14884603_SNP [dm6]	G	A	8.081e^-9	1.998e^-5	INTRON Flo2
3R	21211262	3R_21211262_SNP [dm3] 3R_25385540_SNP [dm6]	G	T	8.101e^-9	2.000e^-5	DOWNSTREAM CG31437 INTRON Fur1
2R	5872313	2R_5872313_SNP [dm3] 2R_9984808_SNP [dm6]	C	T	8.110e^-9	2.000e^-5	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18394734	3R_18394734_SNP [dm3] 3R_22569012_SNP [dm6]	T	G	8.135e^-9	2.003e^-5	INTERGENIC	TF binding site mE1_TFBS_inv
3L	22354981	3L_22354981_SNP [dm3] 3L_22361881_SNP [dm6]	A	C	8.143e^-9	2.003e^-5	INTRON Ten-m	TF binding site mE1_TFBS_HSA
2R	11177745	2R_11177745_SNP [dm3] 2R_15290240_SNP [dm6]	G	A	8.160e^-9	2.003e^-5	INTRON Trpm
3R	21210865	3R_21210865_SNP [dm3] 3R_25385143_SNP [dm6]	C	T	8.163e^-9	2.003e^-5	DOWNSTREAM CG31437 INTRON Fur1
2R	13590367	2R_13590367_SNP [dm3] 2R_17702862_SNP [dm6]	A	C	8.248e^-9	2.016e^-5	UPSTREAM snoRNA:snR38:54Ec & 1 other DOWNSTREAM snoRNA:U31:54Eb & 4 others INTRON Uhg1
2R	13590370	2R_13590370_SNP [dm3] 2R_17702865_SNP [dm6]	A	G	8.248e^-9	2.016e^-5	UPSTREAM snoRNA:snR38:54Ec & 1 other DOWNSTREAM snoRNA:U31:54Eb & 4 others INTRON Uhg1
3L	2999876	3L_2999876_SNP [dm3] 3L_2999876_SNP [dm6]	A	G	8.259e^-9	2.016e^-5	INTERGENIC
3R	20578184	3R_20578184_SNP [dm3] 3R_24752462_SNP [dm6]	A	G	8.263e^-9	2.016e^-5	INTRON tld	TF binding site mE1_TFBS_cad
3L	22185461	3L_22185461_SNP [dm3] 3L_22192361_SNP [dm6]	A	G	8.393e^-9	2.021e^-5	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22213093	3L_22213093_SNP [dm3] 3L_22219993_SNP [dm6]	T	C	8.393e^-9	2.021e^-5	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22255739	3L_22255739_SNP [dm3] 3L_22262639_SNP [dm6]	C	A	8.393e^-9	2.021e^-5	NON_SYNONYMOUS_CODING Rich UPSTREAM Ddx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	22354155	3L_22354155_SNP [dm3] 3L_22361055_SNP [dm6]	C	A	8.393e^-9	2.021e^-5	INTRON Ten-m	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	22362835	3L_22362835_SNP [dm3] 3L_22369735_SNP [dm6]	G	T	8.393e^-9	2.021e^-5	INTRON Ten-m
3L	22405317	3L_22405317_SNP [dm3] 3L_22412217_SNP [dm6]	C	A	8.393e^-9	2.021e^-5	INTERGENIC
3L	22164736	3L_22164736_SNP [dm3] 3L_22171636_SNP [dm6]	G	A	8.411e^-9	2.021e^-5	INTRON olf413
3L	22247757	3L_22247757_SNP [dm3] 3L_22254657_SNP [dm6]	T	C	8.411e^-9	2.021e^-5	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22253804	3L_22253804_SNP [dm3] 3L_22260704_SNP [dm6]	G	A	8.411e^-9	2.021e^-5	SYNONYMOUS_CODING Rich	TF binding site mE1_TFBS_sens
3L	22259262	3L_22259262_SNP [dm3] 3L_22266162_SNP [dm6]	A	G	8.411e^-9	2.021e^-5	SYNONYMOUS_CODING CG11523 DOWNSTREAM Ddx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	22266280	3L_22266280_SNP [dm3] 3L_22273180_SNP [dm6]	G	T	8.411e^-9	2.021e^-5	UTR_3_PRIME Csp UPSTREAM srpk79D DOWNSTREAM Csp
3L	22266293	3L_22266293_SNP [dm3] 3L_22273193_SNP [dm6]	G	C	8.411e^-9	2.021e^-5	UTR_3_PRIME Csp UPSTREAM srpk79D DOWNSTREAM Csp
2R	11588627	2R_11588627_SNP [dm3] 2R_15701122_SNP [dm6]	C	T	8.442e^-9	2.026e^-5	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21298218	3R_21298218_SNP [dm3] 3R_25472496_SNP [dm6]	A	C	8.615e^-9	2.059e^-5	UTR_5_PRIME Fur1 UPSTREAM Vps33B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	22197141	3L_22197141_SNP [dm3] 3L_22204041_SNP [dm6]	A	T	8.630e^-9	2.059e^-5	INTRON olf413
3L	22354762	3L_22354762_SNP [dm3] 3L_22361662_SNP [dm6]	A	T	8.630e^-9	2.059e^-5	INTRON Ten-m	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	6617759	3L_6617759_SNP [dm3] 3L_6624659_SNP [dm6]	G	A	8.637e^-9	2.059e^-5	SYNONYMOUS_CODING GluRIA
3L	6617766	3L_6617766_SNP [dm3] 3L_6624666_SNP [dm6]	A	G	8.637e^-9	2.059e^-5	NON_SYNONYMOUS_CODING GluRIA
3L	22232876	3L_22232876_SNP [dm3] 3L_22239776_SNP [dm6]	C	T	8.685e^-9	2.068e^-5	INTRON olf413	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22153232	3L_22153232_SNP [dm3] 3L_22160132_SNP [dm6]	A	G	8.887e^-9	2.089e^-5	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22206419	3L_22206419_SNP [dm3] 3L_22213319_SNP [dm6]	A	G	8.887e^-9	2.089e^-5	INTRON olf413
3L	22236419	3L_22236419_SNP [dm3] 3L_22243319_SNP [dm6]	T	C	8.887e^-9	2.089e^-5	UTR_3_PRIME olf413 DOWNSTREAM olf413
3L	22239342	3L_22239342_SNP [dm3] 3L_22246242_SNP [dm6]	C	G	8.887e^-9	2.089e^-5	UTR_3_PRIME olf413
3L	22242765	3L_22242765_SNP [dm3] 3L_22249665_SNP [dm6]	A	T	8.887e^-9	2.089e^-5	INTERGENIC
3L	22294941	3L_22294941_SNP [dm3] 3L_22301841_SNP [dm6]	G	A	8.887e^-9	2.089e^-5	INTRON Ten-m
3L	22359686	3L_22359686_SNP [dm3] 3L_22366586_SNP [dm6]	G	A	8.887e^-9	2.089e^-5	INTRON Ten-m
3L	22362425	3L_22362425_SNP [dm3] 3L_22369325_SNP [dm6]	A	G	8.887e^-9	2.089e^-5	INTRON Ten-m
3L	22393128	3L_22393128_SNP [dm3] 3L_22400028_SNP [dm6]	A	C	8.887e^-9	2.089e^-5	INTRON Ten-m	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	22399946	3L_22399946_SNP [dm3] 3L_22406846_SNP [dm6]	G	T	8.887e^-9	2.089e^-5	INTRON Ten-m	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18060471	3L_18060471_SNP [dm3] 3L_18067371_SNP [dm6]	G	C	9.031e^-9	2.120e^-5	INTERGENIC
3R	9293934	3R_9293934_SNP [dm3] 3R_13468212_SNP [dm6]	T	C	9.077e^-9	2.126e^-5	INTERGENIC
3R	9295205	3R_9295205_SNP [dm3] 3R_13469483_SNP [dm6]	C	T	9.077e^-9	2.126e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9793742	3L_9793742_SNP [dm3] 3L_9800642_SNP [dm6]	A	G	9.151e^-9	2.140e^-5	DOWNSTREAM Ilp3 & 1 other INTRON CG32052
2R	4511855	2R_4511855_SNP [dm3] 2R_8624350_SNP [dm6]	A	G	9.162e^-9	2.140e^-5	UTR_3_PRIME Cirl DOWNSTREAM Cirl
3L	22366997	3L_22366997_SNP [dm3] 3L_22373897_SNP [dm6]	C	A	9.206e^-9	2.148e^-5	INTRON Ten-m	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8838742	3L_8838742_SNP [dm3] 3L_8845642_SNP [dm6]	G	T	9.311e^-9	2.170e^-5	INTRON dally
3L	12461960	3L_12461960_SNP [dm3] 3L_12468860_SNP [dm6]	C	G	9.460e^-9	2.202e^-5	UPSTREAM eyg DOWNSTREAM CG32102 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
2R	17343769	2R_17343769_SNP [dm3] 2R_21456264_SNP [dm6]	G	A	9.651e^-9	2.243e^-5	INTRON Sdc
3L	19389760	3L_19389760_SNP [dm3] 3L_19396660_SNP [dm6]	C	A	9.767e^-9	2.268e^-5	INTRON CG32206
3L	2147727	3L_2147727_SNP [dm3] 3L_2147727_SNP [dm6]	G	A	9.902e^-9	2.296e^-5	INTRON zormin
3R	23940802	3R_23940802_SNP [dm3] 3R_28115080_SNP [dm6]	G	T	9.920e^-9	2.296e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	19777072	2L_19777072_SNP [dm3] 2L_19777072_SNP [dm6]	A	C	9.928e^-9	2.296e^-5	INTRON CdGAPr	TF binding site mE1_TFBS_cad
3R	26622368	3R_26622368_SNP [dm3] 3R_30796646_SNP [dm6]	G	A	1.002e^-8	2.315e^-5	INTRON wts
2L	18522590	2L_18522590_SNP [dm3] 2L_18522590_SNP [dm6]	T	A	1.015e^-8	2.343e^-5	DOWNSTREAM CR44903 INTRON CG10211	TF binding site BDTNP1_TFBS_twi
3R	23662268	3R_23662268_SNP [dm3] 3R_27836546_SNP [dm6]	T	G	1.021e^-8	2.352e^-5	INTRON CG34353
2R	11691589	2R_11691589_SNP [dm3] 2R_15804084_SNP [dm6]	C	G	1.023e^-8	2.353e^-5	INTRON tun & 1 other
3L	11771431	3L_11771431_SNP [dm3] 3L_11778331_SNP [dm6]	A	G	1.039e^-8	2.389e^-5	INTRON Pi3K68D & 1 other	TF binding site mE1_TFBS_cad
3L	13054966	3L_13054966_SNP [dm3] 3L_13061866_SNP [dm6]	G	T	1.042e^-8	2.391e^-5	UPSTREAM CG34428 & 1 other INTERGENIC
3R	25581204	3R_25581204_SNP [dm3] 3R_29755482_SNP [dm6]	A	C	1.059e^-8	2.428e^-5	SPLICE_SITE_REGION CR44953 DOWNSTREAM yata INTRON CR44953	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7395526	2R_7395526_SNP [dm3] 2R_11508021_SNP [dm6]	C	A	1.068e^-8	2.436e^-5	UTR_3_PRIME inv DOWNSTREAM inv
2L	8804929	2L_8804929_SNP [dm3] 2L_8804929_SNP [dm6]	A	T	1.070e^-8	2.436e^-5	INTERGENIC
2L	8805100	2L_8805100_INS [dm3] 2L_8805100_INS [dm6]	A	AAG	1.070e^-8	2.436e^-5	INTERGENIC
2L	8805127	2L_8805127_SNP [dm3] 2L_8805127_SNP [dm6]	C	T	1.070e^-8	2.436e^-5	INTERGENIC
2L	8805128	2L_8805128_SNP [dm3] 2L_8805128_SNP [dm6]	T	A	1.070e^-8	2.436e^-5	INTERGENIC
2L	8805130	2L_8805130_SNP [dm3] 2L_8805130_SNP [dm6]	A	T	1.070e^-8	2.436e^-5	INTERGENIC
2L	16021683	2L_16021683_SNP [dm3] 2L_16021683_SNP [dm6]	T	A	1.073e^-8	2.437e^-5	INTRON beat-Ic
2L	16021703	2L_16021703_SNP [dm3] 2L_16021703_SNP [dm6]	C	T	1.073e^-8	2.437e^-5	INTRON beat-Ic
2L	19756146	2L_19756146_SNP [dm3] 2L_19756146_SNP [dm6]	C	A	1.075e^-8	2.437e^-5	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_HSA
2L	19603630	2L_19603630_SNP [dm3] 2L_19603630_SNP [dm6]	A	C	1.076e^-8	2.437e^-5	INTRON CR44978 & 1 other
2L	2688454	2L_2688454_SNP [dm3] 2L_2688454_SNP [dm6]	T	G	1.077e^-8	2.437e^-5	INTRON CG31690
3L	22241402	3L_22241402_SNP [dm3] 3L_22248302_SNP [dm6]	C	G	1.093e^-8	2.469e^-5	DOWNSTREAM olf413 INTERGENIC
3L	6194018	3L_6194018_SNP [dm3] 3L_6200918_SNP [dm6]	A	G	1.095e^-8	2.470e^-5	NON_SYNONYMOUS_CODING CG8219 DOWNSTREAM Trn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22273476	3L_22273476_SNP [dm3] 3L_22280376_SNP [dm6]	G	A	1.100e^-8	2.476e^-5	INTRON srpk79D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21242930	3R_21242930_SNP [dm3] 3R_25417208_SNP [dm6]	A	G	1.101e^-8	2.476e^-5	INTRON Fur1
3R	21314727	3R_21314727_SNP [dm3] 3R_25489005_SNP [dm6]	G	A	1.101e^-8	2.476e^-5	SYNONYMOUS_CODING Dhap-at
X	14584153	X_14584153_SNP [dm3] X_14690120_SNP [dm6]	A	G	1.124e^-8	2.493e^-5	UTR_3_PRIME NetB
3L	12560230	3L_12560230_SNP [dm3] 3L_12567130_SNP [dm6]	T	G	1.132e^-8	2.493e^-5	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12560236	3L_12560236_DEL [dm3] 3L_12567136_DEL [dm6]	GT	C	1.132e^-8	2.493e^-5	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12560239	3L_12560239_SNP [dm3] 3L_12567139_SNP [dm6]	T	A	1.132e^-8	2.493e^-5	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12560241	3L_12560241_SNP [dm3] 3L_12567141_SNP [dm6]	T	G	1.132e^-8	2.493e^-5	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12560245	3L_12560245_SNP [dm3] 3L_12567145_SNP [dm6]	A	C	1.132e^-8	2.493e^-5	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12560246	3L_12560246_SNP [dm3] 3L_12567146_SNP [dm6]	G	T	1.132e^-8	2.493e^-5	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2305697	3L_2305697_SNP [dm3] 3L_2305697_SNP [dm6]	G	T	1.132e^-8	2.493e^-5	INTERGENIC
2L	10276849	2L_10276849_SNP [dm3] 2L_10276849_SNP [dm6]	G	A	1.138e^-8	2.493e^-5	START_GAINED Utx UTR_5_PRIME Utx INTRON Utx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_zfh1
2R	14856759	2R_14856759_SNP [dm3] 2R_18969254_SNP [dm6]	A	G	1.138e^-8	2.493e^-5	DOWNSTREAM prod INTERGENIC
2R	14856760	2R_14856760_SNP [dm3] 2R_18969255_SNP [dm6]	G	A	1.138e^-8	2.493e^-5	DOWNSTREAM prod INTERGENIC
2R	15426089	2R_15426089_SNP [dm3] 2R_19538584_SNP [dm6]	A	T	1.138e^-8	2.493e^-5	INTRON sm
2R	15427350	2R_15427350_SNP [dm3] 2R_19539845_SNP [dm6]	A	T	1.138e^-8	2.493e^-5	INTRON sm	TF binding site mE1_TFBS_sbb
2R	15427813	2R_15427813_SNP [dm3] 2R_19540308_SNP [dm6]	C	T	1.138e^-8	2.493e^-5	INTRON sm
2R	15428583	2R_15428583_SNP [dm3] 2R_19541078_SNP [dm6]	G	A	1.138e^-8	2.493e^-5	INTRON sm
2R	15431308	2R_15431308_SNP [dm3] 2R_19543803_SNP [dm6]	G	T	1.138e^-8	2.493e^-5	INTRON sm
2R	15433473	2R_15433473_SNP [dm3] 2R_19545968_SNP [dm6]	G	T	1.138e^-8	2.493e^-5	INTRON sm	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
2R	16592817	2R_16592817_SNP [dm3] 2R_20705312_SNP [dm6]	A	G	1.138e^-8	2.493e^-5	INTRON dpr
3L	9498241	3L_9498241_SNP [dm3] 3L_9505141_SNP [dm6]	C	T	1.138e^-8	2.493e^-5	UTR_5_PRIME path	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9498820	3L_9498820_SNP [dm3] 3L_9505720_SNP [dm6]	A	G	1.138e^-8	2.493e^-5	UPSTREAM path INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	19623474	X_19623474_SNP [dm3] X_19729441_SNP [dm6]	C	T	1.138e^-8	2.493e^-5	UTR_3_PRIME CG12531
X	19623823	X_19623823_SNP [dm3] X_19729790_SNP [dm6]	T	C	1.138e^-8	2.493e^-5	UTR_3_PRIME CG12531
3L	22205864	3L_22205864_SNP [dm3] 3L_22212764_SNP [dm6]	A	T	1.141e^-8	2.497e^-5	INTRON olf413
2R	12177152	2R_12177152_SNP [dm3] 2R_16289647_SNP [dm6]	A	G	1.155e^-8	2.517e^-5	UPSTREAM CG30099 INTRON CR43730 & 1 other
2R	12177154	2R_12177154_SNP [dm3] 2R_16289649_SNP [dm6]	C	T	1.155e^-8	2.517e^-5	UPSTREAM CG30099 INTRON CR43730 & 1 other
2R	11588525	2R_11588525_SNP [dm3] 2R_15701020_SNP [dm6]	G	T	1.156e^-8	2.517e^-5	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080 INTRON CG30080 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22154795	3L_22154795_SNP [dm3] 3L_22161695_SNP [dm6]	G	C	1.156e^-8	2.517e^-5	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3L	22251572	3L_22251572_SNP [dm3] 3L_22258472_SNP [dm6]	C	A	1.157e^-8	2.517e^-5	SYNONYMOUS_CODING Rich	TF binding site mE1_TFBS_HSA
3L	1846331	3L_1846331_SNP [dm3] 3L_1846331_SNP [dm6]	C	A	1.180e^-8	2.564e^-5	INTERGENIC
3L	22152028	3L_22152028_SNP [dm3] 3L_22158928_SNP [dm6]	G	A	1.226e^-8	2.654e^-5	INTRON olf413	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	22242764	3L_22242764_SNP [dm3] 3L_22249664_SNP [dm6]	C	T	1.226e^-8	2.654e^-5	INTERGENIC
3L	22368277	3L_22368277_SNP [dm3] 3L_22375177_SNP [dm6]	C	A	1.226e^-8	2.654e^-5	INTRON Ten-m	TF binding site mE1_TFBS_sens
X	2609708	X_2609708_SNP [dm3] X_2715675_SNP [dm6]	G	A	1.233e^-8	2.666e^-5	NON_SYNONYMOUS_CODING CG2694
3R	9196304	3R_9196304_SNP [dm3] 3R_13370582_SNP [dm6]	C	T	1.236e^-8	2.670e^-5	NON_SYNONYMOUS_CODING Lip3 DOWNSTREAM CheA87a
3L	2302230	3L_2302230_SNP [dm3] 3L_2302230_SNP [dm6]	C	A	1.281e^-8	2.764e^-5	INTERGENIC
2R	11689729	2R_11689729_SNP [dm3] 2R_15802224_SNP [dm6]	T	C	1.283e^-8	2.765e^-5	INTRON Zasp52 & 1 other
2R	12973719	2R_12973719_SNP [dm3] 2R_17086214_SNP [dm6]	G	A	1.300e^-8	2.799e^-5	INTRON CG30460
3L	11317609	3L_11317609_SNP [dm3] 3L_11324509_SNP [dm6]	G	A	1.306e^-8	2.808e^-5	UPSTREAM CR44721 DOWNSTREAM CR44722 EXON CR44723	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	18031807	3L_18031807_SNP [dm3] 3L_18038707_SNP [dm6]	A	G	1.311e^-8	2.811e^-5	INTRON Eip75B
3L	18032319	3L_18032319_SNP [dm3] 3L_18039219_SNP [dm6]	G	A	1.311e^-8	2.811e^-5	INTRON Eip75B
3L	22592306	3L_22592306_SNP [dm3] 3L_22599206_SNP [dm6]	A	C	1.312e^-8	2.811e^-5	INTRON CG14459	TF binding site mE1_TFBS_cad
3L	12560234	3L_12560234_SNP [dm3] 3L_12567134_SNP [dm6]	T	G	1.341e^-8	2.870e^-5	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19777027	2L_19777027_SNP [dm3] 2L_19777027_SNP [dm6]	A	G	1.357e^-8	2.900e^-5	INTRON CdGAPr	TF binding site mE1_TFBS_cad
3L	18012743	3L_18012743_SNP [dm3] 3L_18019643_SNP [dm6]	A	T	1.372e^-8	2.929e^-5	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	12250207	2R_12250207_SNP [dm3] 2R_16362702_SNP [dm6]	T	A	1.376e^-8	2.934e^-5	NON_SYNONYMOUS_CODING CG6262 DOWNSTREAM CG15711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14555462	X_14555462_SNP [dm3] X_14661429_SNP [dm6]	C	T	1.382e^-8	2.941e^-5	INTERGENIC
3R	14079291	3R_14079291_SNP [dm3] 3R_18253569_SNP [dm6]	T	C	1.383e^-8	2.941e^-5	SYNONYMOUS_CODING Ada2a UPSTREAM CG12320 INTRON Rpb4	TF binding site BDTNP1_TFBS_dl
2R	17265140	2R_17265140_SNP [dm3] 2R_21377635_SNP [dm6]	A	G	1.387e^-8	2.941e^-5	INTRON cv-2
2R	17265223	2R_17265223_SNP [dm3] 2R_21377718_SNP [dm6]	A	G	1.387e^-8	2.941e^-5	INTRON cv-2
2R	17265617	2R_17265617_SNP [dm3] 2R_21378112_SNP [dm6]	A	T	1.387e^-8	2.941e^-5	INTRON cv-2
2L	19796124	2L_19796124_SNP [dm3] 2L_19796124_SNP [dm6]	A	G	1.400e^-8	2.964e^-5	UPSTREAM sick & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	2655510	2L_2655510_SNP [dm3] 2L_2655510_SNP [dm6]	A	T	1.410e^-8	2.982e^-5	SYNONYMOUS_CODING Prosbeta4R2 DOWNSTREAM Or23a
2L	8805122	2L_8805122_SNP [dm3] 2L_8805122_SNP [dm6]	T	A	1.415e^-8	2.990e^-5	INTERGENIC
2L	16021699	2L_16021699_SNP [dm3] 2L_16021699_SNP [dm6]	C	A	1.419e^-8	2.996e^-5	INTRON beat-Ic
3R	19929923	3R_19929923_SNP [dm3] 3R_24104201_SNP [dm6]	C	T	1.435e^-8	3.025e^-5	SYNONYMOUS_CODING Syx1A INTRON 4EHP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	17300896	X_17300896_SNP [dm3] X_17406863_SNP [dm6]	T	A	1.440e^-8	3.032e^-5	INTERGENIC
3L	17042284	3L_17042284_SNP [dm3] 3L_17049184_SNP [dm6]	C	T	1.448e^-8	3.043e^-5	UPSTREAM rogdi DOWNSTREAM TpnC73F INTERGENIC
X	1724191	X_1724191_SNP [dm3] X_1830158_SNP [dm6]	C	G	1.448e^-8	3.043e^-5	INTRON CG42666
X	14586035	X_14586035_SNP [dm3] X_14692002_SNP [dm6]	G	A	1.453e^-8	3.051e^-5	SYNONYMOUS_CODING NetB
3L	11779926	3L_11779926_SNP [dm3] 3L_11786826_SNP [dm6]	G	T	1.457e^-8	3.054e^-5	INTRON Pi3K68D
3L	12560206	3L_12560206_SNP [dm3] 3L_12567106_SNP [dm6]	A	G	1.465e^-8	3.068e^-5	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10577974	2R_10577974_SNP [dm3] 2R_14690469_SNP [dm6]	A	G	1.469e^-8	3.072e^-5	INTRON mspo
3R	10466792	3R_10466792_SNP [dm3] 3R_14641070_SNP [dm6]	C	T	1.487e^-8	3.107e^-5	SYNONYMOUS_CODING Cad88C INTRON CG7886
2L	3817502	2L_3817502_SNP [dm3] 2L_3817502_SNP [dm6]	C	T	1.494e^-8	3.119e^-5	UPSTREAM CR44077 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10514291	2R_10514291_INS [dm3] 2R_14626786_INS [dm6]	C	CTCA	1.503e^-8	3.133e^-5	INTERGENIC
3L	22260228	3L_22260228_SNP [dm3] 3L_22267128_SNP [dm6]	G	C	1.504e^-8	3.133e^-5	UPSTREAM Csp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18265457	3L_18265457_SNP [dm3] 3L_18272357_SNP [dm6]	T	C	1.511e^-8	3.143e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	8892097	2R_8892097_SNP [dm3] 2R_13004592_SNP [dm6]	G	T	1.515e^-8	3.148e^-5	INTRON Su_z_2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	14160816	X_14160816_DEL [dm3] X_14266783_DEL [dm6]	AA	A	1.530e^-8	3.174e^-5	UPSTREAM CG13404 INTRON na
3L	18032758	3L_18032758_SNP [dm3] 3L_18039658_SNP [dm6]	A	C	1.590e^-8	3.295e^-5	UPSTREAM CG32192 INTRON Eip75B
3L	22229776	3L_22229776_SNP [dm3] 3L_22236676_SNP [dm6]	A	G	1.599e^-8	3.311e^-5	INTRON olf413
X	14523866	X_14523866_INS [dm3] X_14629833_INS [dm6]	G	GTGGGACATACGGACAG...	1.606e^-8	3.320e^-5	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18845381	2R_18845381_SNP [dm3] 2R_22957858_SNP [dm6]	A	G	1.607e^-8	3.320e^-5	UPSTREAM CR44780 INTERGENIC
3L	15321475	3L_15321475_SNP [dm3] 3L_15328375_SNP [dm6]	A	T	1.632e^-8	3.367e^-5	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	6194019	3L_6194019_SNP [dm3] 3L_6200919_SNP [dm6]	T	G	1.657e^-8	3.417e^-5	NON_SYNONYMOUS_CODING CG8219 DOWNSTREAM Trn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7904333	2L_7904333_SNP [dm3] 2L_7904333_SNP [dm6]	T	A	1.695e^-8	3.491e^-5	INTRON Snoo
3L	18032003	3L_18032003_SNP [dm3] 3L_18038903_SNP [dm6]	C	T	1.700e^-8	3.496e^-5	INTRON Eip75B
3R	23629080	3R_23629080_SNP [dm3] 3R_27803358_SNP [dm6]	G	C	1.708e^-8	3.510e^-5	INTRON CG34353
3R	14619314	3R_14619314_SNP [dm3] 3R_18793592_SNP [dm6]	C	T	1.714e^-8	3.517e^-5	UTR_5_PRIME CG7720 INTRON CG7720
2L	2543016	2L_2543016_SNP [dm3] 2L_2543016_SNP [dm6]	C	T	1.733e^-8	3.553e^-5	INTERGENIC
3R	9171000	3R_9171000_INS [dm3] 3R_13345278_INS [dm6]	T	TT	1.751e^-8	3.580e^-5	DOWNSTREAM PK2-R1 INTERGENIC
2L	3678859	2L_3678859_SNP [dm3] 2L_3678859_SNP [dm6]	G	A	1.753e^-8	3.580e^-5	INTRON CG34340
2L	4028181	2L_4028181_SNP [dm3] 2L_4028181_SNP [dm6]	G	A	1.753e^-8	3.580e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	9214653	3R_9214653_SNP [dm3] 3R_13388931_SNP [dm6]	G	A	1.756e^-8	3.580e^-5	UPSTREAM CG9799 DOWNSTREAM CCHa2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	9214654	3R_9214654_SNP [dm3] 3R_13388932_SNP [dm6]	A	G	1.756e^-8	3.580e^-5	UPSTREAM CG9799 DOWNSTREAM CCHa2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	23726078	3R_23726078_SNP [dm3] 3R_27900356_SNP [dm6]	T	A	1.769e^-8	3.602e^-5	INTRON CG34353
3L	18032038	3L_18032038_DEL [dm3] 3L_18038938_DEL [dm6]	AG	A	1.779e^-8	3.620e^-5	INTRON Eip75B
3L	16213899	3L_16213899_SNP [dm3] 3L_16220799_SNP [dm6]	T	C	1.820e^-8	3.699e^-5	INTERGENIC
3R	9660161	3R_9660161_SNP [dm3] 3R_13834439_SNP [dm6]	G	C	1.825e^-8	3.704e^-5	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2
3L	22407739	3L_22407739_SNP [dm3] 3L_22414639_SNP [dm6]	C	A	1.850e^-8	3.751e^-5	INTERGENIC
2L	12859900	2L_12859900_SNP [dm3] 2L_12859900_SNP [dm6]	G	A	1.858e^-8	3.763e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
2L	21296950	2L_21296950_SNP [dm3] 2L_21296950_SNP [dm6]	C	A	1.865e^-8	3.774e^-5	NON_SYNONYMOUS_CODING Gr39a INTRON Mio & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	2939347	2R_2939347_SNP [dm3] 2R_7051842_SNP [dm6]	G	A	1.899e^-8	3.839e^-5	UTR_3_PRIME lbm UPSTREAM Tsp42En
3L	22163188	3L_22163188_SNP [dm3] 3L_22170088_SNP [dm6]	A	C	1.915e^-8	3.860e^-5	INTRON olf413
3L	22622253	3L_22622253_SNP [dm3] 3L_22629153_SNP [dm6]	G	A	1.918e^-8	3.860e^-5	INTRON CG14459
3L	22636266	3L_22636266_SNP [dm3] 3L_22643166_SNP [dm6]	C	T	1.918e^-8	3.860e^-5	UPSTREAM CR45381 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	22636307	3L_22636307_SNP [dm3] 3L_22643207_SNP [dm6]	C	T	1.918e^-8	3.860e^-5	UPSTREAM CR45381 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	22250692	3L_22250692_SNP [dm3] 3L_22257592_SNP [dm6]	T	A	1.984e^-8	3.988e^-5	DOWNSTREAM Rich INTERGENIC
3R	21293431	3R_21293431_SNP [dm3] 3R_25467709_SNP [dm6]	A	T	1.993e^-8	3.999e^-5	INTRON Fur1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21298908	3R_21298908_SNP [dm3] 3R_25473186_SNP [dm6]	T	A	1.993e^-8	3.999e^-5	UPSTREAM Vps33B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	14585973	X_14585973_SNP [dm3] X_14691940_SNP [dm6]	C	T	2.018e^-8	4.039e^-5	INTRON NetB
X	14585989	X_14585989_SNP [dm3] X_14691956_SNP [dm6]	A	T	2.018e^-8	4.039e^-5	INTRON NetB
X	18047857	X_18047857_SNP [dm3] X_18153824_SNP [dm6]	C	A	2.057e^-8	4.114e^-5	INTERGENIC
X	2474596	X_2474596_SNP [dm3] X_2580563_SNP [dm6]	C	A	2.084e^-8	4.161e^-5	UPSTREAM CG13759 & 1 other INTERGENIC
3L	11795111	3L_11795111_SNP [dm3] 3L_11802011_SNP [dm6]	A	T	2.085e^-8	4.161e^-5	UTR_3_PRIME CG42255 UPSTREAM tRNA:CR32093
2L	3819040	2L_3819040_SNP [dm3] 2L_3819040_SNP [dm6]	T	G	2.117e^-8	4.219e^-5	DOWNSTREAM CR44077 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10777943	3L_10777943_SNP [dm3] 3L_10784843_SNP [dm6]	C	T	2.140e^-8	4.256e^-5	INTRON CR44544
3L	10777945	3L_10777945_SNP [dm3] 3L_10784845_SNP [dm6]	T	C	2.140e^-8	4.256e^-5	INTRON CR44544
3R	21332689	3R_21332689_SNP [dm3] 3R_25506967_SNP [dm6]	T	C	2.211e^-8	4.387e^-5	SYNONYMOUS_CODING CG5111	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	21332700	3R_21332700_SNP [dm3] 3R_25506978_SNP [dm6]	G	A	2.211e^-8	4.387e^-5	SYNONYMOUS_CODING CG5111	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	2303069	3L_2303069_SNP [dm3] 3L_2303069_SNP [dm6]	A	T	2.238e^-8	4.438e^-5	INTERGENIC
2R	18787656	2R_18787656_SNP [dm3] 2R_22900133_SNP [dm6]	G	T	2.242e^-8	4.439e^-5	INTRON nahoda
3R	24515725	3R_24515725_SNP [dm3] 3R_28690003_SNP [dm6]	C	A	2.254e^-8	4.460e^-5	INTRON CG9990	TF binding site mE1_TFBS_inv
2L	13703483	2L_13703483_SNP [dm3] 2L_13703483_SNP [dm6]	A	G	2.266e^-8	4.478e^-5	INTRON CG31814
2L	7615831	2L_7615831_SNP [dm3] 2L_7615831_SNP [dm6]	C	A	2.304e^-8	4.541e^-5	NON_SYNONYMOUS_CODING CG6739 UTR_3_PRIME CG6739
2L	7615865	2L_7615865_SNP [dm3] 2L_7615865_SNP [dm6]	G	T	2.304e^-8	4.541e^-5	NON_SYNONYMOUS_CODING CG6739 UTR_3_PRIME CG6739
X	4871410	X_4871410_SNP [dm3] X_4977377_SNP [dm6]	T	C	2.305e^-8	4.541e^-5	INTRON CR44833
2R	7909546	2R_7909546_SNP [dm3] 2R_12022041_SNP [dm6]	T	A	2.371e^-8	4.587e^-5	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx
2L	7904335	2L_7904335_DEL [dm3] 2L_7904335_DEL [dm6]	TGCAC	G	2.373e^-8	4.587e^-5	INTRON Snoo
3L	2525978	3L_2525978_SNP [dm3] 3L_2525978_SNP [dm6]	C	G	2.397e^-8	4.587e^-5	NON_SYNONYMOUS_CODING CG32295 INTRON Spn
3L	2303107	3L_2303107_SNP [dm3] 3L_2303107_SNP [dm6]	G	T	2.404e^-8	4.587e^-5	INTERGENIC
2L	16964972	2L_16964972_SNP [dm3] 2L_16964972_SNP [dm6]	A	T	2.411e^-8	4.587e^-5	UPSTREAM CR45285 INTERGENIC
2L	2447212	2L_2447212_SNP [dm3] 2L_2447212_SNP [dm6]	C	T	2.411e^-8	4.587e^-5	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
2L	4425357	2L_4425357_SNP [dm3] 2L_4425357_SNP [dm6]	C	T	2.411e^-8	4.587e^-5	INTRON CG15431
2L	4425367	2L_4425367_SNP [dm3] 2L_4425367_SNP [dm6]	C	T	2.411e^-8	4.587e^-5	INTRON CG15431
2L	9929795	2L_9929795_SNP [dm3] 2L_9929795_SNP [dm6]	C	A	2.411e^-8	4.587e^-5	UPSTREAM CG42367 INTRON CG42366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16738092	2R_16738092_SNP [dm3] 2R_20850587_SNP [dm6]	A	G	2.411e^-8	4.587e^-5	SYNONYMOUS_CODING CG9993 UPSTREAM CG17999	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17176399	2R_17176399_SNP [dm3] 2R_21288894_SNP [dm6]	G	C	2.411e^-8	4.587e^-5	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
2R	17889073	2R_17889073_SNP [dm3] 2R_22001568_SNP [dm6]	C	T	2.411e^-8	4.587e^-5	INTRON CG34370
2R	20205970	2R_20205970_DEL [dm3] 2R_24318447_DEL [dm6]	TG	A	2.411e^-8	4.587e^-5	INTERGENIC
2R	6050283	2R_6050283_SNP [dm3] 2R_10162778_SNP [dm6]	C	A	2.411e^-8	4.587e^-5	INTRON KCNQ
3L	1043112	3L_1043112_DEL [dm3] 3L_1043112_DEL [dm6]	AA	A	2.411e^-8	4.587e^-5	INTRON bab1
3L	11870411	3L_11870411_SNP [dm3] 3L_11877311_SNP [dm6]	C	T	2.411e^-8	4.587e^-5	INTRON CG44837
3L	12629943	3L_12629943_DEL [dm3] 3L_12636843_DEL [dm6]	GGCCACAGATTCGGTGAG...	G	2.411e^-8	4.587e^-5	INTRON CR32111
3L	15011379	3L_15011379_SNP [dm3] 3L_15018279_SNP [dm6]	T	C	2.411e^-8	4.587e^-5	SYNONYMOUS_CODING Sytbeta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15388102	3L_15388102_SNP [dm3] 3L_15395002_SNP [dm6]	G	A	2.411e^-8	4.587e^-5	INTERGENIC
3L	15389731	3L_15389731_SNP [dm3] 3L_15396631_SNP [dm6]	A	G	2.411e^-8	4.587e^-5	INTERGENIC
3L	1901967	3L_1901967_SNP [dm3] 3L_1901967_SNP [dm6]	C	T	2.411e^-8	4.587e^-5	UTR_3_PRIME CG1887 INTRON CG1887
3L	2745043	3L_2745043_SNP [dm3] 3L_2745043_SNP [dm6]	G	A	2.411e^-8	4.587e^-5	INTRON Mrtf	TF binding site BDTNP1_TFBS_twi
3L	5373929	3L_5373929_SNP [dm3] 3L_5380829_SNP [dm6]	C	A	2.411e^-8	4.587e^-5	INTRON Ir64a
3L	9522532	3L_9522532_SNP [dm3] 3L_9529432_SNP [dm6]	C	G	2.411e^-8	4.587e^-5	INTRON Or67a
3R	13462736	3R_13462736_SNP [dm3] 3R_17637014_SNP [dm6]	C	A	2.411e^-8	4.587e^-5	INTRON CG43175
3R	16758087	3R_16758087_SNP [dm3] 3R_20932365_SNP [dm6]	T	G	2.411e^-8	4.587e^-5	INTRON CG31191
3R	18683793	3R_18683793_SNP [dm3] 3R_22858071_SNP [dm6]	A	C	2.411e^-8	4.587e^-5	INTERGENIC
3R	24970228	3R_24970228_SNP [dm3] 3R_29144506_SNP [dm6]	G	A	2.411e^-8	4.587e^-5	SYNONYMOUS_CODING CG14516
X	16716978	X_16716978_SNP [dm3] X_16822945_SNP [dm6]	C	T	2.411e^-8	4.587e^-5	INTRON CG4829
X	4957884	X_4957884_SNP [dm3] X_5063851_SNP [dm6]	T	C	2.411e^-8	4.587e^-5	NON_SYNONYMOUS_CODING ovo UPSTREAM ovo INTRON ovo EXON CR44833	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu
X	4957889	X_4957889_SNP [dm3] X_5063856_SNP [dm6]	A	G	2.411e^-8	4.587e^-5	NON_SYNONYMOUS_CODING ovo UPSTREAM ovo INTRON ovo EXON CR44833	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu
X	4957990	X_4957990_SNP [dm3] X_5063957_SNP [dm6]	A	G	2.411e^-8	4.587e^-5	UPSTREAM ovo & 1 other INTRON ovo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu
X	4958244	X_4958244_SNP [dm3] X_5064211_SNP [dm6]	G	C	2.411e^-8	4.587e^-5	UPSTREAM ovo & 1 other INTRON ovo	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20300848	3R_20300848_SNP [dm3] 3R_24475126_SNP [dm6]	A	G	2.413e^-8	4.587e^-5	INTERGENIC
2R	10427530	2R_10427530_SNP [dm3] 2R_14540025_SNP [dm6]	T	C	2.415e^-8	4.587e^-5	INTRON ttv
3L	16474374	3L_16474374_SNP [dm3] 3L_16481274_SNP [dm6]	A	T	2.447e^-8	4.639e^-5	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	20300913	3R_20300913_SNP [dm3] 3R_24475191_SNP [dm6]	C	A	2.447e^-8	4.639e^-5	INTERGENIC
2R	15429857	2R_15429857_SNP [dm3] 2R_19542352_SNP [dm6]	G	A	2.469e^-8	4.676e^-5	INTRON sm
2R	2856838	2R_2856838_SNP [dm3] 2R_6969333_SNP [dm6]	C	T	2.475e^-8	4.682e^-5	INTRON mim & 1 other	TF binding site BDTNP1_TFBS_da
3R	24253004	3R_24253004_SNP [dm3] 3R_28427282_SNP [dm6]	G	T	2.538e^-8	4.796e^-5	INTRON beat-VI
3R	21251409	3R_21251409_SNP [dm3] 3R_25425687_SNP [dm6]	C	T	2.561e^-8	4.832e^-5	INTRON Fur1
3L	4557536	3L_4557536_SNP [dm3] 3L_4557536_SNP [dm6]	C	T	2.562e^-8	4.832e^-5	UTR_5_PRIME CG42540 INTRON CG42540
3L	22179175	3L_22179175_SNP [dm3] 3L_22186075_SNP [dm6]	A	G	2.571e^-8	4.844e^-5	INTRON olf413
X	14554789	X_14554789_SNP [dm3] X_14660756_SNP [dm6]	T	A	2.592e^-8	4.878e^-5	INTERGENIC
X	14554799	X_14554799_SNP [dm3] X_14660766_SNP [dm6]	G	A	2.690e^-8	5.058e^-5	INTERGENIC
3L	10777936	3L_10777936_SNP [dm3] 3L_10784836_SNP [dm6]	C	A	2.743e^-8	5.152e^-5	INTRON CR44544
X	4635218	X_4635218_SNP [dm3] X_4741185_SNP [dm6]	G	A	2.753e^-8	5.166e^-5	INTERGENIC
3L	10777932	3L_10777932_SNP [dm3] 3L_10784832_SNP [dm6]	C	T	2.771e^-8	5.195e^-5	INTRON CR44544
2R	14097078	2R_14097078_SNP [dm3] 2R_18209573_SNP [dm6]	C	T	2.791e^-8	5.226e^-5	DOWNSTREAM CG30114 EXON CR45147	TF binding site BDTNP1_TFBS_twi
3L	13304925	3L_13304925_SNP [dm3] 3L_13311825_SNP [dm6]	C	A	2.889e^-8	5.405e^-5	INTERGENIC
3R	21332679	3R_21332679_SNP [dm3] 3R_25506957_SNP [dm6]	T	C	2.900e^-8	5.419e^-5	SYNONYMOUS_CODING CG5111	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	6213107	3L_6213107_SNP [dm3] 3L_6220007_SNP [dm6]	A	T	2.998e^-8	5.575e^-5	UPSTREAM pncr008:3L INTERGENIC	TF binding site mE1_TFBS_HSA
3L	6213306	3L_6213306_SNP [dm3] 3L_6220206_SNP [dm6]	A	T	2.998e^-8	5.575e^-5	UPSTREAM pncr008:3L INTERGENIC
3L	6213454	3L_6213454_SNP [dm3] 3L_6220354_SNP [dm6]	G	A	2.998e^-8	5.575e^-5	UPSTREAM pncr008:3L INTERGENIC
3L	6213796	3L_6213796_SNP [dm3] 3L_6220696_SNP [dm6]	G	A	2.998e^-8	5.575e^-5	INTRON pncr008:3L
3L	6223512	3L_6223512_SNP [dm3] 3L_6230412_SNP [dm6]	T	A	2.998e^-8	5.575e^-5	INTERGENIC

By genomic position
Variant impact
Gene name

Microbiota_OTU048 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results