DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.415e^-10)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

4609 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	20100632	2R_20100632_SNP [dm3] 2R_24213109_SNP [dm6]	T	C	1.285e^-9	0.002	UTR_3_PRIME CG30419
3L	7147857	3L_7147857_SNP [dm3] 3L_7154757_SNP [dm6]	C	T	1.710e^-8	0.009	INTRON corn	TF binding site BDTNP1_TFBS_twi
2L	18724389	2L_18724389_SNP [dm3] 2L_18724389_SNP [dm6]	T	A	1.882e^-8	0.009	INTRON CG10348	TF binding site mE1_TFBS_sens
2R	11510317	2R_11510317_SNP [dm3] 2R_15622812_SNP [dm6]	T	A	3.387e^-8	0.009	INTRON CG42524	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	11512353	2R_11512353_SNP [dm3] 2R_15624848_SNP [dm6]	A	C	3.786e^-8	0.009	INTRON CG42524
2R	11510932	2R_11510932_INS [dm3] 2R_15623427_INS [dm6]	C	CCTC	3.942e^-8	0.009	INTRON CG42524	TF binding site mE1_TFBS_chinmo
2R	11511812	2R_11511812_MNP [dm3] 2R_15624307_MNP [dm6]	ATCTTTTC	GAAAAGAT	4.536e^-8	0.009	INTRON CG42524	TF binding site mE1_TFBS_chinmo
3L	9054881	3L_9054881_DEL [dm3] 3L_9061781_DEL [dm6]	TAACAAAGTGC...	T	5.464e^-8	0.009	INTRON Argk
2R	11511131	2R_11511131_SNP [dm3] 2R_15623626_SNP [dm6]	C	A	5.849e^-8	0.009	INTRON CG42524	TF binding site mE1_TFBS_chinmo
2L	11208331	2L_11208331_SNP [dm3] 2L_11208331_SNP [dm6]	T	C	5.917e^-8	0.009	INTERGENIC
2R	11510937	2R_11510937_SNP [dm3] 2R_15623432_SNP [dm6]	A	C	6.012e^-8	0.009	INTRON CG42524	TF binding site mE1_TFBS_chinmo
3R	9659611	3R_9659611_INS [dm3] 3R_13833889_INS [dm6]	A	TGAACCTGTTTAAAATTTAA...	9.058e^-8	0.009	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2	TF binding site mE1_TFBS_bab1
3R	9659614	3R_9659614_SNP [dm3] 3R_13833892_SNP [dm6]	C	A	9.058e^-8	0.009	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2	TF binding site mE1_TFBS_bab1
3R	9659617	3R_9659617_SNP [dm3] 3R_13833895_SNP [dm6]	T	A	9.058e^-8	0.009	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2	TF binding site mE1_TFBS_bab1
3R	9659621	3R_9659621_SNP [dm3] 3R_13833899_SNP [dm6]	G	A	9.058e^-8	0.009	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2	TF binding site mE1_TFBS_bab1
3R	9659625	3R_9659625_SNP [dm3] 3R_13833903_SNP [dm6]	T	A	9.058e^-8	0.009	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2	TF binding site mE1_TFBS_bab1
2R	11510948	2R_11510948_SNP [dm3] 2R_15623443_SNP [dm6]	A	T	1.055e^-7	0.009	INTRON CG42524	TF binding site mE1_TFBS_chinmo
3L	7043658	3L_7043658_SNP [dm3] 3L_7050558_SNP [dm6]	G	T	1.149e^-7	0.009	SPLICE_SITE_REGION Mp INTRON Mp
3L	3979179	3L_3979179_SNP [dm3] 3L_3979179_SNP [dm6]	A	G	1.290e^-7	0.009	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	9756227	3L_9756227_DEL [dm3] 3L_9763127_DEL [dm6]	CG	T	1.427e^-7	0.009	UPSTREAM CG8177 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	9756262	3L_9756262_SNP [dm3] 3L_9763162_SNP [dm6]	A	T	1.427e^-7	0.009	UPSTREAM CG8177 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13493479	3R_13493479_SNP [dm3] 3R_17667757_SNP [dm6]	A	G	1.438e^-7	0.009	UPSTREAM tRNA:CR31576 INTRON CG14322 EXON CR45045	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
3L	7043655	3L_7043655_INS [dm3] 3L_7050555_INS [dm6]	T	TGGAT	1.505e^-7	0.009	INTRON Mp
2R	11511098	2R_11511098_SNP [dm3] 2R_15623593_SNP [dm6]	A	G	1.670e^-7	0.009	INTRON CG42524	TF binding site mE1_TFBS_chinmo
3R	9659939	3R_9659939_INS [dm3] 3R_13834217_INS [dm6]	G	GTGTGGGTAAGTAAAG...	1.735e^-7	0.009	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2	TF binding site mE1_TFBS_bab1
3R	13490831	3R_13490831_SNP [dm3] 3R_17665109_SNP [dm6]	C	T	1.810e^-7	0.009	INTRON CG14322	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	9398297	3R_9398297_SNP [dm3] 3R_13572575_SNP [dm6]	C	G	1.977e^-7	0.009	INTERGENIC
3R	13478903	3R_13478903_SNP [dm3] 3R_17653181_SNP [dm6]	C	T	2.093e^-7	0.009	INTRON CG14322 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6266409	2R_6266409_SNP [dm3] 2R_10378904_SNP [dm6]	T	C	2.172e^-7	0.009	NON_SYNONYMOUS_CODING Ir47a INTRON CG42732	TF binding site mE1_TFBS_sens
2L	10588798	2L_10588798_SNP [dm3] 2L_10588798_SNP [dm6]	C	T	2.203e^-7	0.009	INTRON Trim9
3R	26299927	3R_26299927_SNP [dm3] 3R_30474205_SNP [dm6]	G	A	2.353e^-7	0.009	SYNONYMOUS_CODING PH4alphaEFB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	7939278	2R_7939278_SNP [dm3] 2R_12051773_SNP [dm6]	G	A	2.491e^-7	0.009	UPSTREAM CG30039 INTERGENIC
3R	13476708	3R_13476708_SNP [dm3] 3R_17650986_SNP [dm6]	G	A	2.509e^-7	0.009	INTRON CG14322
3R	13493055	3R_13493055_SNP [dm3] 3R_17667333_SNP [dm6]	C	A	2.509e^-7	0.009	UPSTREAM CR45045 & 1 other INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
X	16408934	X_16408934_DEL [dm3] X_16514901_DEL [dm6]	TT	T	2.533e^-7	0.009	INTRON para
2L	7908781	2L_7908781_SNP [dm3] 2L_7908781_SNP [dm6]	A	C	2.576e^-7	0.009	INTRON Snoo
2L	7908782	2L_7908782_SNP [dm3] 2L_7908782_SNP [dm6]	C	A	2.576e^-7	0.009	INTRON Snoo
3R	13478789	3R_13478789_SNP [dm3] 3R_17653067_SNP [dm6]	T	C	2.674e^-7	0.009	INTRON CG14322 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	9659953	3R_9659953_SNP [dm3] 3R_13834231_SNP [dm6]	T	A	2.704e^-7	0.009	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2	TF binding site mE1_TFBS_bab1
3R	13490496	3R_13490496_SNP [dm3] 3R_17664774_SNP [dm6]	T	G	2.833e^-7	0.009	NON_SYNONYMOUS_CODING CG14322	TF binding site mE1_TFBS_inv
3R	13492920	3R_13492920_SNP [dm3] 3R_17667198_SNP [dm6]	C	T	2.833e^-7	0.009	UPSTREAM CR45045 & 1 other INTRON CG14322	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	13492954	3R_13492954_SNP [dm3] 3R_17667232_SNP [dm6]	C	A	2.833e^-7	0.009	UPSTREAM CR45045 & 1 other INTRON CG14322	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	13493032	3R_13493032_SNP [dm3] 3R_17667310_SNP [dm6]	C	T	2.833e^-7	0.009	UPSTREAM CR45045 & 1 other INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	13493075	3R_13493075_INS [dm3] 3R_17667353_INS [dm6]	T	TGTATTCTT	2.833e^-7	0.009	UPSTREAM CR45045 & 1 other INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_Trl
3R	13493080	3R_13493080_MNP [dm3] 3R_17667358_MNP [dm6]	GAA	TTC	2.833e^-7	0.009	UPSTREAM CR45045 & 1 other INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_Trl
3R	13493084	3R_13493084_SNP [dm3] 3R_17667362_SNP [dm6]	A	C	2.833e^-7	0.009	UPSTREAM CR45045 & 1 other INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_Trl
3R	13493086	3R_13493086_SNP [dm3] 3R_17667364_SNP [dm6]	A	T	2.833e^-7	0.009	UPSTREAM CR45045 & 1 other INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_Trl
3R	13493087	3R_13493087_SNP [dm3] 3R_17667365_SNP [dm6]	T	A	2.833e^-7	0.009	UPSTREAM CR45045 & 1 other INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_Trl
3R	13493127	3R_13493127_SNP [dm3] 3R_17667405_SNP [dm6]	T	C	2.833e^-7	0.009	UPSTREAM CR45045 & 1 other INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	13493182	3R_13493182_SNP [dm3] 3R_17667460_SNP [dm6]	G	C	2.833e^-7	0.009	UPSTREAM CR45045 & 1 other INTRON CG14322	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
3R	13495658	3R_13495658_SNP [dm3] 3R_17669936_SNP [dm6]	T	A	2.833e^-7	0.009	UTR_3_PRIME CG14322 DOWNSTREAM CG14322 INTRON CG7523	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13495769	3R_13495769_SNP [dm3] 3R_17670047_SNP [dm6]	T	C	2.833e^-7	0.009	DOWNSTREAM CG14322 INTRON CG7523	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24451708	3R_24451708_SNP [dm3] 3R_28625986_SNP [dm6]	T	C	3.306e^-7	0.009	INTRON CG10011
3R	13477879	3R_13477879_SNP [dm3] 3R_17652157_SNP [dm6]	T	A	3.326e^-7	0.009	DOWNSTREAM CR45223 INTRON CG14322
3R	13477913	3R_13477913_SNP [dm3] 3R_17652191_SNP [dm6]	G	A	3.326e^-7	0.009	INTRON CG14322 EXON CR45223
3R	13478025	3R_13478025_SNP [dm3] 3R_17652303_SNP [dm6]	T	C	3.326e^-7	0.009	INTRON CG14322 EXON CR45223
3R	13478072	3R_13478072_SNP [dm3] 3R_17652350_SNP [dm6]	T	C	3.326e^-7	0.009	INTRON CG14322 EXON CR45223
3R	13478776	3R_13478776_SNP [dm3] 3R_17653054_SNP [dm6]	T	C	3.326e^-7	0.009	INTRON CG14322 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	13478845	3R_13478845_SNP [dm3] 3R_17653123_SNP [dm6]	C	A	3.326e^-7	0.009	INTRON CG14322 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	13478913	3R_13478913_SNP [dm3] 3R_17653191_SNP [dm6]	T	A	3.326e^-7	0.009	INTRON CG14322 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13481117	3R_13481117_SNP [dm3] 3R_17655395_SNP [dm6]	G	A	3.326e^-7	0.009	INTRON CG14322	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13481221	3R_13481221_SNP [dm3] 3R_17655499_SNP [dm6]	A	G	3.326e^-7	0.009	INTRON CG14322	TF binding site BDTNP1_TFBS_dl
3R	13488252	3R_13488252_SNP [dm3] 3R_17662530_SNP [dm6]	T	G	3.326e^-7	0.009	SYNONYMOUS_CODING CG14322
3R	13488387	3R_13488387_SNP [dm3] 3R_17662665_SNP [dm6]	C	G	3.326e^-7	0.009	SYNONYMOUS_CODING CG14322
3R	13489628	3R_13489628_SNP [dm3] 3R_17663906_SNP [dm6]	C	A	3.326e^-7	0.009	NON_SYNONYMOUS_CODING CG14322
2L	2598685	2L_2598685_SNP [dm3] 2L_2598685_SNP [dm6]	C	T	3.558e^-7	0.009	EXON CR44790
3R	13493924	3R_13493924_SNP [dm3] 3R_17668202_SNP [dm6]	A	G	3.697e^-7	0.009	DOWNSTREAM CR45045 & 1 other INTRON CG14322 EXON tRNA:CR31576	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
3R	13487388	3R_13487388_SNP [dm3] 3R_17661666_SNP [dm6]	G	A	3.844e^-7	0.009	SYNONYMOUS_CODING CG14322	TF binding site mE1_TFBS_sens
3L	9756596	3L_9756596_SNP [dm3] 3L_9763496_SNP [dm6]	C	T	3.880e^-7	0.009	UPSTREAM CG8177 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16130997	2L_16130997_SNP [dm3] 2L_16130997_SNP [dm6]	A	T	3.935e^-7	0.009	INTERGENIC
2L	16130998	2L_16130998_SNP [dm3] 2L_16130998_SNP [dm6]	G	T	3.935e^-7	0.009	INTERGENIC
2L	16131011	2L_16131011_SNP [dm3] 2L_16131011_SNP [dm6]	A	C	3.935e^-7	0.009	INTERGENIC
3R	13488585	3R_13488585_SNP [dm3] 3R_17662863_SNP [dm6]	T	C	4.136e^-7	0.009	SYNONYMOUS_CODING CG14322
3R	9666776	3R_9666776_SNP [dm3] 3R_13841054_SNP [dm6]	G	A	4.276e^-7	0.009	INTERGENIC
3L	20986984	3L_20986984_SNP [dm3] 3L_20993884_SNP [dm6]	A	G	4.360e^-7	0.009	UTR_3_PRIME skd DOWNSTREAM CG12984 & 1 other
2R	7902900	2R_7902900_SNP [dm3] 2R_12015395_SNP [dm6]	A	G	4.391e^-7	0.009	INTRON otk EXON CR44306	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7905506	2R_7905506_SNP [dm3] 2R_12018001_SNP [dm6]	G	C	4.391e^-7	0.009	INTRON otk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2R	7910179	2R_7910179_SNP [dm3] 2R_12022674_SNP [dm6]	T	G	4.391e^-7	0.009	DOWNSTREAM CG8964 INTERGENIC
2R	7910180	2R_7910180_SNP [dm3] 2R_12022675_SNP [dm6]	T	G	4.391e^-7	0.009	DOWNSTREAM CG8964 INTERGENIC
2R	7910283	2R_7910283_SNP [dm3] 2R_12022778_SNP [dm6]	T	G	4.391e^-7	0.009	DOWNSTREAM CG8964 INTERGENIC
2R	7910337	2R_7910337_SNP [dm3] 2R_12022832_SNP [dm6]	T	C	4.391e^-7	0.009	DOWNSTREAM CG8964 INTERGENIC
2R	7910344	2R_7910344_SNP [dm3] 2R_12022839_SNP [dm6]	G	A	4.391e^-7	0.009	DOWNSTREAM CG8964 INTERGENIC
2R	7914623	2R_7914623_SNP [dm3] 2R_12027118_SNP [dm6]	C	T	4.391e^-7	0.009	SYNONYMOUS_CODING Mppe UPSTREAM pds5	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	7917758	2R_7917758_SNP [dm3] 2R_12030253_SNP [dm6]	C	G	4.391e^-7	0.009	SYNONYMOUS_CODING pds5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7918381	2R_7918381_SNP [dm3] 2R_12030876_SNP [dm6]	T	C	4.391e^-7	0.009	SYNONYMOUS_CODING pds5
2R	7918871	2R_7918871_SNP [dm3] 2R_12031366_SNP [dm6]	C	T	4.391e^-7	0.009	SYNONYMOUS_CODING pds5
2R	7919210	2R_7919210_SNP [dm3] 2R_12031705_SNP [dm6]	A	C	4.391e^-7	0.009	SYNONYMOUS_CODING pds5
2R	7932011	2R_7932011_SNP [dm3] 2R_12044506_SNP [dm6]	T	A	4.391e^-7	0.009	UPSTREAM Drep-1 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	7934046	2R_7934046_SNP [dm3] 2R_12046541_SNP [dm6]	G	A	4.391e^-7	0.009	INTRON Drep-1
3L	9985596	3L_9985596_SNP [dm3] 3L_9992496_SNP [dm6]	A	C	4.785e^-7	0.01	INTRON dpr6
2R	7915007	2R_7915007_SNP [dm3] 2R_12027502_SNP [dm6]	A	T	4.854e^-7	0.01	UTR_5_PRIME Mppe UPSTREAM pds5	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	23036235	3R_23036235_DEL [dm3] 3R_27210513_DEL [dm6]	GAGGATCCG	G	4.865e^-7	0.01	INTERGENIC
3R	24179750	3R_24179750_SNP [dm3] 3R_28354028_SNP [dm6]	G	T	5.271e^-7	0.01	DOWNSTREAM Or98b INTERGENIC
3L	6097381	3L_6097381_SNP [dm3] 3L_6104281_SNP [dm6]	A	G	5.357e^-7	0.01	INTRON Ets65A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13495664	3R_13495664_SNP [dm3] 3R_17669942_SNP [dm6]	C	A	5.359e^-7	0.01	UTR_3_PRIME CG14322 DOWNSTREAM CG14322 INTRON CG7523	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7913385	2R_7913385_SNP [dm3] 2R_12025880_SNP [dm6]	C	T	5.893e^-7	0.011	SYNONYMOUS_CODING Mppe UPSTREAM CG8964	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7923425	2R_7923425_SNP [dm3] 2R_12035920_SNP [dm6]	C	G	5.893e^-7	0.011	UTR_3_PRIME CG8321 DOWNSTREAM CG43191
2R	7914137	2R_7914137_SNP [dm3] 2R_12026632_SNP [dm6]	A	C	5.970e^-7	0.011	INTRON Mppe	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7936281	2R_7936281_DEL [dm3] 2R_12048776_DEL [dm6]	TT	T	6.181e^-7	0.011	INTRON Drep-1
3L	6249052	3L_6249052_SNP [dm3] 3L_6255952_SNP [dm6]	G	A	6.238e^-7	0.011	INTRON Best2	TF binding site BDTNP1_TFBS_dl
3L	6250753	3L_6250753_SNP [dm3] 3L_6257653_SNP [dm6]	G	A	6.238e^-7	0.011	SYNONYMOUS_CODING CG10163 UPSTREAM Best2	TF binding site mE1_TFBS_HSA
3R	8363758	3R_8363758_SNP [dm3] 3R_12538036_SNP [dm6]	T	G	6.467e^-7	0.012	INTRON Octbeta3R
2R	7930957	2R_7930957_SNP [dm3] 2R_12043452_SNP [dm6]	C	T	6.477e^-7	0.012	DOWNSTREAM RpIII128 INTERGENIC
3R	9659630	3R_9659630_SNP [dm3] 3R_13833908_SNP [dm6]	G	T	6.505e^-7	0.012	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2	TF binding site mE1_TFBS_bab1
3L	14335302	3L_14335302_SNP [dm3] 3L_14342202_SNP [dm6]	G	A	6.590e^-7	0.012	INTRON fz
2R	11512665	2R_11512665_SNP [dm3] 2R_15625160_SNP [dm6]	G	A	6.697e^-7	0.012	INTRON CG42524
3R	13477474	3R_13477474_SNP [dm3] 3R_17651752_SNP [dm6]	G	C	7.216e^-7	0.013	DOWNSTREAM CR45223 INTRON CG14322
2L	5627170	2L_5627170_SNP [dm3] 2L_5627170_SNP [dm6]	G	A	7.355e^-7	0.013	INTRON CG31646	TF binding site BDTNP1_TFBS_twi
2L	5627433	2L_5627433_SNP [dm3] 2L_5627433_SNP [dm6]	A	T	7.355e^-7	0.013	INTRON CG31646	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11510514	2R_11510514_SNP [dm3] 2R_15623009_SNP [dm6]	T	C	7.772e^-7	0.013	INTRON CG42524	TF binding site mE1_TFBS_chinmo
3L	9985602	3L_9985602_SNP [dm3] 3L_9992502_SNP [dm6]	G	T	7.792e^-7	0.013	INTRON dpr6
2L	11209070	2L_11209070_SNP [dm3] 2L_11209070_SNP [dm6]	T	C	8.016e^-7	0.013	INTERGENIC	silencer mE1_HDAC_PRE
3L	14335462	3L_14335462_SNP [dm3] 3L_14342362_SNP [dm6]	T	G	8.019e^-7	0.013	INTRON fz
3L	6250854	3L_6250854_SNP [dm3] 3L_6257754_SNP [dm6]	T	A	8.227e^-7	0.013	INTRON CG10163
2R	8863742	2R_8863742_SNP [dm3] 2R_12976237_SNP [dm6]	G	A	8.233e^-7	0.013	INTRON Psc	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	9169358	2L_9169358_SNP [dm3] 2L_9169358_SNP [dm6]	C	T	8.424e^-7	0.014	INTRON tai
3R	13477517	3R_13477517_SNP [dm3] 3R_17651795_SNP [dm6]	T	A	8.688e^-7	0.014	DOWNSTREAM CR45223 INTRON CG14322
3R	13477561	3R_13477561_SNP [dm3] 3R_17651839_SNP [dm6]	A	T	8.688e^-7	0.014	DOWNSTREAM CR45223 INTRON CG14322
2L	800257	2L_800257_SNP [dm3] 2L_800257_SNP [dm6]	A	G	8.720e^-7	0.014	EXON CR45259
2L	5626713	2L_5626713_SNP [dm3] 2L_5626713_SNP [dm6]	G	A	8.879e^-7	0.014	UTR_3_PRIME CG31646
2L	2598358	2L_2598358_SNP [dm3] 2L_2598358_SNP [dm6]	T	A	8.946e^-7	0.014	DOWNSTREAM CR44790 INTERGENIC
3R	13477448	3R_13477448_DEL [dm3] 3R_17651726_DEL [dm6]	TTTTAAGAACTGTGAACTTG...	T	8.985e^-7	0.014	DOWNSTREAM CR45223 INTRON CG14322
3L	14335284	3L_14335284_DEL [dm3] 3L_14342184_DEL [dm6]	TCAAAGGAGTCCCC...	T	8.987e^-7	0.014	INTRON fz
3R	22441451	3R_22441451_SNP [dm3] 3R_26615729_SNP [dm6]	G	T	9.664e^-7	0.014	INTERGENIC
2R	3308757	2R_3308757_SNP [dm3] 2R_7421252_SNP [dm6]	G	C	9.759e^-7	0.014	INTRON so	TF binding site mE1_TFBS_chinmo
2R	3308759	2R_3308759_SNP [dm3] 2R_7421254_SNP [dm6]	G	A	9.759e^-7	0.014	INTRON so	TF binding site mE1_TFBS_chinmo
2R	3308767	2R_3308767_SNP [dm3] 2R_7421262_SNP [dm6]	G	A	9.759e^-7	0.014	INTRON so	TF binding site mE1_TFBS_chinmo
3R	16944619	3R_16944619_DEL [dm3] 3R_21118897_DEL [dm6]	AA	A	1.026e^-6	0.015	UPSTREAM Bdbt DOWNSTREAM ppan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	7937621	2R_7937621_SNP [dm3] 2R_12050116_SNP [dm6]	A	G	1.043e^-6	0.015	UTR_3_PRIME Drep-1 DOWNSTREAM CG30039
2R	7937724	2R_7937724_SNP [dm3] 2R_12050219_SNP [dm6]	A	G	1.043e^-6	0.015	DOWNSTREAM CG30039 & 1 other INTERGENIC
2R	7937748	2R_7937748_SNP [dm3] 2R_12050243_SNP [dm6]	C	T	1.043e^-6	0.015	DOWNSTREAM CG30039 & 1 other INTERGENIC
3L	13946723	3L_13946723_SNP [dm3] 3L_13953623_SNP [dm6]	T	G	1.063e^-6	0.015	INTRON CG32137
2R	7939497	2R_7939497_SNP [dm3] 2R_12051992_SNP [dm6]	C	A	1.079e^-6	0.015	UPSTREAM CG30039 & 1 other INTERGENIC
3R	13478748	3R_13478748_SNP [dm3] 3R_17653026_SNP [dm6]	C	T	1.103e^-6	0.015	INTRON CG14322 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	19396934	3R_19396934_SNP [dm3] 3R_23571212_SNP [dm6]	G	A	1.110e^-6	0.015	INTRON beat-IV
3R	25019579	3R_25019579_INS [dm3] 3R_29193857_INS [dm6]	C	CACC	1.152e^-6	0.016	INTRON CG14509
X	12582410	X_12582410_SNP [dm3] X_12688377_SNP [dm6]	A	T	1.157e^-6	0.016	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26005318	3R_26005318_SNP [dm3] 3R_30179596_SNP [dm6]	C	T	1.196e^-6	0.016	NON_SYNONYMOUS_CODING CG15530 UPSTREAM Bet5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3R	13478024	3R_13478024_SNP [dm3] 3R_17652302_SNP [dm6]	A	T	1.215e^-6	0.016	INTRON CG14322 EXON CR45223
2R	7937325	2R_7937325_DEL [dm3] 2R_12049820_DEL [dm6]	AA	A	1.247e^-6	0.016	UTR_3_PRIME Drep-1
3R	8399939	3R_8399939_SNP [dm3] 3R_12574217_SNP [dm6]	T	A	1.248e^-6	0.016	INTRON Octbeta2R
3L	6247397	3L_6247397_INS [dm3] 3L_6254297_INS [dm6]	A	AT	1.374e^-6	0.018	INTRON Best2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9242009	2R_9242009_SNP [dm3] 2R_13354504_SNP [dm6]	C	T	1.397e^-6	0.018	START_GAINED CG17048 UTR_5_PRIME CG17048 EXON CR44206
3L	6247958	3L_6247958_SNP [dm3] 3L_6254858_SNP [dm6]	C	T	1.423e^-6	0.018	INTRON Best2
2L	8279085	2L_8279085_SNP [dm3] 2L_8279085_SNP [dm6]	A	G	1.532e^-6	0.02	INTRON Btk29A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2R	11512331	2R_11512331_SNP [dm3] 2R_15624826_SNP [dm6]	T	G	1.575e^-6	0.02	INTRON CG42524
3L	4629596	3L_4629596_SNP [dm3] 3L_4629596_SNP [dm6]	T	A	1.604e^-6	0.02	DOWNSTREAM axo & 1 other INTERGENIC
3R	7693937	3R_7693937_INS [dm3] 3R_11868215_INS [dm6]	T	TT	1.619e^-6	0.02	INTRON CG6959
3L	12007085	3L_12007085_SNP [dm3] 3L_12013985_SNP [dm6]	C	T	1.626e^-6	0.02	INTRON rols
3R	25988142	3R_25988142_SNP [dm3] 3R_30162420_SNP [dm6]	C	T	1.644e^-6	0.02	INTERGENIC
3R	13493107	3R_13493107_SNP [dm3] 3R_17667385_SNP [dm6]	A	G	1.740e^-6	0.021	UPSTREAM CR45045 & 1 other INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_Trl
2L	8239960	2L_8239960_MNP [dm3] 2L_8239960_MNP [dm6]	GTAGAA	CCGTTC	1.754e^-6	0.021	UPSTREAM Pvr DOWNSTREAM Spn28F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	8239968	2L_8239968_DEL [dm3] 2L_8239968_DEL [dm6]	GAA	TT	1.754e^-6	0.021	UPSTREAM Pvr DOWNSTREAM Spn28F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	8240157	2L_8240157_SNP [dm3] 2L_8240157_SNP [dm6]	G	A	1.754e^-6	0.021	UPSTREAM Pvr DOWNSTREAM Spn28F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	8240161	2L_8240161_SNP [dm3] 2L_8240161_SNP [dm6]	G	A	1.754e^-6	0.021	UPSTREAM Pvr DOWNSTREAM Spn28F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	8240203	2L_8240203_INS [dm3] 2L_8240203_INS [dm6]	C	CC	1.754e^-6	0.021	UPSTREAM Pvr DOWNSTREAM Spn28F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	20907282	X_20907282_SNP [dm3] X_21036255_SNP [dm6]	T	G	1.833e^-6	0.022	INTRON Ntf-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11511190	2R_11511190_SNP [dm3] 2R_15623685_SNP [dm6]	G	A	1.838e^-6	0.022	INTRON CG42524	TF binding site mE1_TFBS_chinmo
2R	7939268	2R_7939268_SNP [dm3] 2R_12051763_SNP [dm6]	G	T	1.906e^-6	0.022	UPSTREAM CG30039 INTERGENIC
3R	19336383	3R_19336383_INS [dm3] 3R_23510661_INS [dm6]	A	ACAACAC	1.924e^-6	0.022	INTERGENIC
3R	19336385	3R_19336385_SNP [dm3] 3R_23510663_SNP [dm6]	G	T	1.924e^-6	0.022	INTERGENIC
2L	7830992	2L_7830992_SNP [dm3] 2L_7830992_SNP [dm6]	C	T	1.926e^-6	0.022	SYNONYMOUS_CODING mts	TF binding site mE1_TFBS_cad
2L	7265787	2L_7265787_SNP [dm3] 2L_7265787_SNP [dm6]	A	T	1.971e^-6	0.022	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	12542950	X_12542950_SNP [dm3] X_12648917_SNP [dm6]	G	A	1.980e^-6	0.022	SYNONYMOUS_CODING Tomosyn INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl
3L	9756489	3L_9756489_DEL [dm3] 3L_9763389_DEL [dm6]	CG	A	2.004e^-6	0.023	UPSTREAM CG8177 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14335627	3L_14335627_SNP [dm3] 3L_14342527_SNP [dm6]	G	T	2.057e^-6	0.023	INTRON fz
3L	14335628	3L_14335628_SNP [dm3] 3L_14342528_SNP [dm6]	T	C	2.057e^-6	0.023	INTRON fz
2R	10996641	2R_10996641_SNP [dm3] 2R_15109136_SNP [dm6]	T	C	2.120e^-6	0.023	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8240198	2L_8240198_SNP [dm3] 2L_8240198_SNP [dm6]	C	T	2.267e^-6	0.025	UPSTREAM Pvr DOWNSTREAM Spn28F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	9251371	3L_9251371_SNP [dm3] 3L_9258271_SNP [dm6]	G	A	2.278e^-6	0.025	INTRON GluRIB
3L	15738591	3L_15738591_SNP [dm3] 3L_15745491_SNP [dm6]	A	T	2.302e^-6	0.025	INTERGENIC
X	15563933	X_15563933_SNP [dm3] X_15669900_SNP [dm6]	C	T	2.380e^-6	0.026	UPSTREAM CG15646 INTRON CG15646	TF binding site BDTNP1_TFBS_dl
3R	13494543	3R_13494543_SNP [dm3] 3R_17668821_SNP [dm6]	C	A	2.441e^-6	0.026	SYNONYMOUS_CODING CG14322 DOWNSTREAM CR45045 & 2 others	TF binding site mE1_TFBS_inv
2L	4622984	2L_4622984_SNP [dm3] 2L_4622984_SNP [dm6]	C	T	2.450e^-6	0.026	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7923044	2R_7923044_SNP [dm3] 2R_12035539_SNP [dm6]	G	C	2.513e^-6	0.027	NON_SYNONYMOUS_CODING CG8321 DOWNSTREAM CG43191
3R	1806427	3R_1806427_SNP [dm3] 3R_5980705_SNP [dm6]	A	T	2.530e^-6	0.027	INTERGENIC
X	6901772	X_6901772_SNP [dm3] X_7007739_SNP [dm6]	G	C	2.541e^-6	0.027	INTRON Inx7
3L	951327	3L_951327_SNP [dm3] 3L_951327_SNP [dm6]	A	G	2.543e^-6	0.027	INTRON Glut1
2L	8240416	2L_8240416_SNP [dm3] 2L_8240416_SNP [dm6]	A	G	2.569e^-6	0.027	UTR_3_PRIME Spn28F UPSTREAM Pvr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	19336627	3R_19336627_SNP [dm3] 3R_23510905_SNP [dm6]	A	G	2.600e^-6	0.027	INTERGENIC
2R	7922838	2R_7922838_DEL [dm3] 2R_12035333_DEL [dm6]	CC	C	2.729e^-6	0.028	DOWNSTREAM CG43191 INTRON CG8321
3L	10375651	3L_10375651_SNP [dm3] 3L_10382551_SNP [dm6]	G	C	2.786e^-6	0.028	INTERGENIC
3R	17596197	3R_17596197_SNP [dm3] 3R_21770475_SNP [dm6]	C	A	2.979e^-6	0.03	UTR_3_PRIME GABA-B-R2 DOWNSTREAM Burs	TF binding site mE1_TFBS_cad
3R	6780481	3R_6780481_SNP [dm3] 3R_10954759_SNP [dm6]	C	G	2.984e^-6	0.03	INTERGENIC
3L	998804	3L_998804_DEL [dm3] 3L_998804_DEL [dm6]	ATTAGACAATTTTGA...	A	3.079e^-6	0.031	SPLICE_SITE_REGION trio INTRON trio
3R	13482089	3R_13482089_SNP [dm3] 3R_17656367_SNP [dm6]	C	T	3.172e^-6	0.032	UPSTREAM tRNA:CR31577 INTRON CG14322
3R	22200595	3R_22200595_SNP [dm3] 3R_26374873_SNP [dm6]	T	A	3.244e^-6	0.032	INTERGENIC
3R	21289244	3R_21289244_SNP [dm3] 3R_25463522_SNP [dm6]	G	T	3.259e^-6	0.032	INTRON Fur1
2L	6196929	2L_6196929_SNP [dm3] 2L_6196929_SNP [dm6]	A	C	3.308e^-6	0.032	SYNONYMOUS_CODING CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13494399	3R_13494399_SNP [dm3] 3R_17668677_SNP [dm6]	T	C	3.310e^-6	0.032	SYNONYMOUS_CODING CG14322 DOWNSTREAM CR45045 & 2 others	TF binding site mE1_TFBS_inv
3R	13494402	3R_13494402_SNP [dm3] 3R_17668680_SNP [dm6]	A	T	3.310e^-6	0.032	SYNONYMOUS_CODING CG14322 DOWNSTREAM CR45045 & 2 others	TF binding site mE1_TFBS_inv
3R	13494405	3R_13494405_SNP [dm3] 3R_17668683_SNP [dm6]	T	C	3.310e^-6	0.032	SYNONYMOUS_CODING CG14322 DOWNSTREAM CR45045 & 2 others	TF binding site mE1_TFBS_inv
3R	9659724	3R_9659724_SNP [dm3] 3R_13834002_SNP [dm6]	T	C	3.313e^-6	0.032	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2	TF binding site mE1_TFBS_bab1
2L	14173983	2L_14173983_SNP [dm3] 2L_14173983_SNP [dm6]	A	G	3.320e^-6	0.032	INTRON CG43333
X	4296421	X_4296421_SNP [dm3] X_4402388_SNP [dm6]	C	T	3.378e^-6	0.032	INTRON CR32773	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	6300559	X_6300559_SNP [dm3] X_6406526_SNP [dm6]	T	A	3.452e^-6	0.033	INTERGENIC
3L	1029263	3L_1029263_SNP [dm3] 3L_1029263_SNP [dm6]	G	A	3.558e^-6	0.034	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14173966	2L_14173966_SNP [dm3] 2L_14173966_SNP [dm6]	T	C	3.650e^-6	0.034	INTRON CG43333
3L	3329882	3L_3329882_SNP [dm3] 3L_3329882_SNP [dm6]	A	G	3.719e^-6	0.035	UPSTREAM CG14961 DOWNSTREAM CR45380 INTERGENIC	TF binding site mE1_TFBS_cad
3R	20283176	3R_20283176_SNP [dm3] 3R_24457454_SNP [dm6]	T	A	3.733e^-6	0.035	UPSTREAM nAChRalpha1 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	26297969	3R_26297969_INS [dm3] 3R_30472247_INS [dm6]	C	CATTTCCCCAC...	3.869e^-6	0.036	INTRON PH4alphaEFB
3R	26299831	3R_26299831_SNP [dm3] 3R_30474109_SNP [dm6]	C	A	3.869e^-6	0.036	NON_SYNONYMOUS_CODING PH4alphaEFB	TF binding site BDTNP1_TFBS_da
2R	8557972	2R_8557972_SNP [dm3] 2R_12670467_SNP [dm6]	G	C	3.874e^-6	0.036	UPSTREAM nemy DOWNSTREAM CG42708 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2L	2598684	2L_2598684_SNP [dm3] 2L_2598684_SNP [dm6]	G	T	3.902e^-6	0.036	EXON CR44790
2R	14453683	2R_14453683_SNP [dm3] 2R_18566178_SNP [dm6]	T	A	3.936e^-6	0.036	INTRON GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	795476	2L_795476_SNP [dm3] 2L_795476_SNP [dm6]	G	T	4.219e^-6	0.038	INTERGENIC
2R	19191208	2R_19191208_INS [dm3] 2R_23303685_INS [dm6]	T	TT	4.305e^-6	0.039	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7148187	3L_7148187_SNP [dm3] 3L_7155087_SNP [dm6]	T	C	4.328e^-6	0.039	INTRON corn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11526950	2R_11526950_SNP [dm3] 2R_15639445_SNP [dm6]	C	T	4.389e^-6	0.039	INTRON CG42524
3R	13478820	3R_13478820_SNP [dm3] 3R_17653098_SNP [dm6]	C	A	4.404e^-6	0.039	INTRON CG14322 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	26504365	3R_26504365_SNP [dm3] 3R_30678643_SNP [dm6]	A	G	4.455e^-6	0.039	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	7337529	2L_7337529_SNP [dm3] 2L_7337529_SNP [dm6]	A	G	4.541e^-6	0.04	INTRON Wnt6
2L	7337556	2L_7337556_SNP [dm3] 2L_7337556_SNP [dm6]	C	T	4.541e^-6	0.04	INTRON Wnt6
3R	26298050	3R_26298050_SNP [dm3] 3R_30472328_SNP [dm6]	T	G	4.558e^-6	0.04	INTRON PH4alphaEFB
3R	19396919	3R_19396919_SNP [dm3] 3R_23571197_SNP [dm6]	T	A	4.574e^-6	0.04	INTRON beat-IV
3R	13500792	3R_13500792_SNP [dm3] 3R_17675070_SNP [dm6]	A	C	4.644e^-6	0.04	SPLICE_SITE_REGION alt INTRON alt
3L	14335408	3L_14335408_SNP [dm3] 3L_14342308_SNP [dm6]	T	A	4.721e^-6	0.04	INTRON fz
3R	15700594	3R_15700594_SNP [dm3] 3R_19874872_SNP [dm6]	T	A	4.735e^-6	0.04	INTRON CG4562	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	13495751	3R_13495751_SNP [dm3] 3R_17670029_SNP [dm6]	T	A	4.743e^-6	0.04	DOWNSTREAM CG14322 INTRON CG7523	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	22252733	X_22252733_SNP [dm3] X_22850897_SNP [dm6]	G	C	4.753e^-6	0.04	INTRON fog & 1 other
X	6776746	X_6776746_SNP [dm3] X_6882713_SNP [dm6]	T	C	4.833e^-6	0.041	INTERGENIC
2L	132376	2L_132376_DEL [dm3] 2L_132376_DEL [dm6]	CA	C	4.867e^-6	0.041	UTR_5_PRIME Gs1 INTRON CG11455 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7907443	2R_7907443_SNP [dm3] 2R_12019938_SNP [dm6]	T	A	4.890e^-6	0.041	UPSTREAM otk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	18125279	3L_18125279_SNP [dm3] 3L_18132179_SNP [dm6]	G	C	4.899e^-6	0.041	UTR_5_PRIME Cyp312a1 UPSTREAM Cyp312a1
3R	8363839	3R_8363839_SNP [dm3] 3R_12538117_SNP [dm6]	T	C	4.947e^-6	0.041	INTRON Octbeta3R
2R	11511178	2R_11511178_SNP [dm3] 2R_15623673_SNP [dm6]	G	T	5.036e^-6	0.041	INTRON CG42524	TF binding site mE1_TFBS_chinmo
2R	11512586	2R_11512586_SNP [dm3] 2R_15625081_SNP [dm6]	C	T	5.036e^-6	0.041	INTRON CG42524
2R	11516738	2R_11516738_SNP [dm3] 2R_15629233_SNP [dm6]	G	A	5.036e^-6	0.041	INTRON CG42524
2R	11526156	2R_11526156_SNP [dm3] 2R_15638651_SNP [dm6]	T	C	5.036e^-6	0.041	INTRON CG42524
2R	11526531	2R_11526531_SNP [dm3] 2R_15639026_SNP [dm6]	C	T	5.036e^-6	0.041	INTRON CG42524
3R	11637697	3R_11637697_SNP [dm3] 3R_15811975_SNP [dm6]	T	G	5.040e^-6	0.041	UPSTREAM alpha-Man-IIb & 1 other INTRON alpha-Man-IIb
2L	14420350	2L_14420350_SNP [dm3] 2L_14420350_SNP [dm6]	C	G	5.210e^-6	0.042	INTERGENIC
2L	15349700	2L_15349700_SNP [dm3] 2L_15349700_SNP [dm6]	T	C	5.253e^-6	0.042	INTERGENIC
3R	24114800	3R_24114800_SNP [dm3] 3R_28289078_SNP [dm6]	T	C	5.438e^-6	0.043	INTERGENIC
2R	14453697	2R_14453697_SNP [dm3] 2R_18566192_SNP [dm6]	T	C	5.492e^-6	0.043	INTRON GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10548790	2R_10548790_SNP [dm3] 2R_14661285_SNP [dm6]	A	T	5.510e^-6	0.043	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18363638	2L_18363638_SNP [dm3] 2L_18363638_SNP [dm6]	G	A	5.510e^-6	0.043	INTRON Fas3
3R	5179025	3R_5179025_SNP [dm3] 3R_9353303_SNP [dm6]	T	C	5.583e^-6	0.044	UPSTREAM snoRNA:Me18S-G1358a INTRON CG45050	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	16532101	3R_16532101_SNP [dm3] 3R_20706379_SNP [dm6]	C	G	5.795e^-6	0.044	START_GAINED Oamb UTR_5_PRIME Oamb INTRON Oamb
3R	13475842	3R_13475842_SNP [dm3] 3R_17650120_SNP [dm6]	G	A	5.810e^-6	0.044	INTRON CG14322
2R	10503625	2R_10503625_SNP [dm3] 2R_14616120_SNP [dm6]	C	T	5.811e^-6	0.044	SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_HSA
2R	10503673	2R_10503673_SNP [dm3] 2R_14616168_SNP [dm6]	A	G	5.811e^-6	0.044	SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	21289246	3R_21289246_SNP [dm3] 3R_25463524_SNP [dm6]	G	A	5.822e^-6	0.044	INTRON Fur1
2L	111618	2L_111618_DEL [dm3] 2L_111618_DEL [dm6]	AGACTTTGGTA...	A	5.872e^-6	0.044	DOWNSTREAM Sam-S INTRON Sam-S
2L	2621062	2L_2621062_SNP [dm3] 2L_2621062_SNP [dm6]	C	T	5.875e^-6	0.044	DOWNSTREAM CG43403 INTERGENIC
2L	14206889	2L_14206889_SNP [dm3] 2L_14206889_SNP [dm6]	G	A	5.904e^-6	0.044	INTRON Dyrk2
2L	14207106	2L_14207106_DEL [dm3] 2L_14207106_DEL [dm6]	AGTCA	A	5.904e^-6	0.044	INTRON Dyrk2
X	6778132	X_6778132_SNP [dm3] X_6884099_SNP [dm6]	C	T	5.936e^-6	0.044	INTERGENIC
2L	1923029	2L_1923029_INS [dm3] 2L_1923029_INS [dm6]	T	TT	5.959e^-6	0.044	INTRON CG7337
2R	16059911	2R_16059911_SNP [dm3] 2R_20172406_SNP [dm6]	A	T	5.961e^-6	0.044	INTERGENIC
2L	768079	2L_768079_SNP [dm3] 2L_768079_SNP [dm6]	T	C	5.964e^-6	0.044	INTERGENIC
2R	11523643	2R_11523643_SNP [dm3] 2R_15636138_SNP [dm6]	G	C	5.995e^-6	0.044	INTRON CG42524
2R	11514920	2R_11514920_SNP [dm3] 2R_15627415_SNP [dm6]	C	T	6.028e^-6	0.044	INTRON CG42524
2R	11525371	2R_11525371_SNP [dm3] 2R_15637866_SNP [dm6]	C	T	6.028e^-6	0.044	SYNONYMOUS_CODING CG42524
2R	11527250	2R_11527250_SNP [dm3] 2R_15639745_SNP [dm6]	A	G	6.028e^-6	0.044	INTRON CG42524
X	6181902	X_6181902_SNP [dm3] X_6287869_SNP [dm6]	C	T	6.053e^-6	0.044	START_GAINED Top3beta UTR_5_PRIME Top3beta UPSTREAM wuho	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	11517170	2R_11517170_SNP [dm3] 2R_15629665_SNP [dm6]	T	C	6.054e^-6	0.044	INTRON CG42524
2L	8279138	2L_8279138_SNP [dm3] 2L_8279138_SNP [dm6]	C	T	6.069e^-6	0.044	INTRON Btk29A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2R	7938021	2R_7938021_SNP [dm3] 2R_12050516_SNP [dm6]	C	G	6.175e^-6	0.044	DOWNSTREAM CG30039 & 1 other INTERGENIC
X	6776697	X_6776697_SNP [dm3] X_6882664_SNP [dm6]	C	T	6.210e^-6	0.044	INTERGENIC
X	12997323	X_12997323_SNP [dm3] X_13103290_SNP [dm6]	G	A	6.251e^-6	0.044	INTRON CG43313
X	12997324	X_12997324_SNP [dm3] X_13103291_SNP [dm6]	T	A	6.251e^-6	0.044	INTRON CG43313
3L	6249102	3L_6249102_SNP [dm3] 3L_6256002_SNP [dm6]	C	T	6.440e^-6	0.046	INTRON Best2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7911353	2L_7911353_SNP [dm3] 2L_7911353_SNP [dm6]	A	G	6.545e^-6	0.046	INTRON Snoo	TF binding site BDTNP1_TFBS_dl
3L	1013707	3L_1013707_SNP [dm3] 3L_1013707_SNP [dm6]	T	A	6.563e^-6	0.046	INTRON trio
3R	8765521	3R_8765521_SNP [dm3] 3R_12939799_SNP [dm6]	A	T	6.604e^-6	0.046	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26471027	3R_26471027_SNP [dm3] 3R_30645305_SNP [dm6]	G	A	6.605e^-6	0.046	SYNONYMOUS_CODING CG31013 DOWNSTREAM PH4alphaPV	TF binding site mE1_TFBS_ftz_f1
3R	13473267	3R_13473267_SNP [dm3] 3R_17647545_SNP [dm6]	A	G	6.676e^-6	0.046	UPSTREAM CG14322 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1923011	2L_1923011_SNP [dm3] 2L_1923011_SNP [dm6]	A	G	6.701e^-6	0.046	INTRON CG7337
2R	7939226	2R_7939226_SNP [dm3] 2R_12051721_SNP [dm6]	A	T	6.867e^-6	0.047	UTR_5_PRIME CG30039
3R	13474442	3R_13474442_SNP [dm3] 3R_17648720_SNP [dm6]	T	C	6.970e^-6	0.048	INTRON CG14322
3R	26477905	3R_26477905_SNP [dm3] 3R_30652183_SNP [dm6]	A	G	6.977e^-6	0.048	INTERGENIC
3L	1030117	3L_1030117_SNP [dm3] 3L_1030117_SNP [dm6]	C	T	7.148e^-6	0.048	INTRON trio
3L	1034709	3L_1034709_SNP [dm3] 3L_1034709_SNP [dm6]	C	A	7.148e^-6	0.048	UTR_5_PRIME trio & 1 other UPSTREAM CG9205 INTRON trio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3R	13466680	3R_13466680_SNP [dm3] 3R_17640958_SNP [dm6]	G	T	7.253e^-6	0.048	INTRON CG43175
3R	13466688	3R_13466688_SNP [dm3] 3R_17640966_SNP [dm6]	G	T	7.253e^-6	0.048	INTRON CG43175
3R	13466886	3R_13466886_SNP [dm3] 3R_17641164_SNP [dm6]	T	C	7.253e^-6	0.048	INTRON CG43175
3R	13468383	3R_13468383_SNP [dm3] 3R_17642661_SNP [dm6]	G	A	7.253e^-6	0.048	INTRON CG43175
3R	13472537	3R_13472537_SNP [dm3] 3R_17646815_SNP [dm6]	C	T	7.253e^-6	0.048	UPSTREAM CG14322 & 1 other DOWNSTREAM tRNA:CR31579 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	13473759	3R_13473759_SNP [dm3] 3R_17648037_SNP [dm6]	A	G	7.253e^-6	0.048	NON_SYNONYMOUS_CODING CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	13473866	3R_13473866_SNP [dm3] 3R_17648144_SNP [dm6]	C	G	7.253e^-6	0.048	INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	13473938	3R_13473938_SNP [dm3] 3R_17648216_SNP [dm6]	C	T	7.253e^-6	0.048	INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	13497514	3R_13497514_INS [dm3] 3R_17671792_INS [dm6]	T	TT	7.267e^-6	0.048	UPSTREAM CG7523 INTRON ald	TF binding site mE1_TFBS_sens
3R	17952234	3R_17952234_SNP [dm3] 3R_22126512_SNP [dm6]	G	T	7.587e^-6	0.05	INTRON CG42390	TF binding site mE1_TFBS_cad
3R	17952243	3R_17952243_SNP [dm3] 3R_22126521_SNP [dm6]	A	G	7.587e^-6	0.05	INTRON CG42390	TF binding site mE1_TFBS_cad
2R	11514570	2R_11514570_SNP [dm3] 2R_15627065_SNP [dm6]	G	C	7.739e^-6	0.05	INTRON CG42524
3R	13480706	3R_13480706_SNP [dm3] 3R_17654984_SNP [dm6]	T	C	7.765e^-6	0.05	INTRON CG14322
3R	13481367	3R_13481367_SNP [dm3] 3R_17655645_SNP [dm6]	A	G	7.812e^-6	0.05	INTRON CG14322
3R	13486403	3R_13486403_SNP [dm3] 3R_17660681_SNP [dm6]	G	A	7.836e^-6	0.05	INTRON CG14322
3L	18102833	3L_18102833_DEL [dm3] 3L_18109733_DEL [dm6]	TTCTAT	T	7.878e^-6	0.051	UPSTREAM mus304 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	15998543	2L_15998543_SNP [dm3] 2L_15998543_SNP [dm6]	T	C	8.028e^-6	0.051	INTERGENIC
X	15634946	X_15634946_SNP [dm3] X_15740913_SNP [dm6]	C	G	8.064e^-6	0.051	DOWNSTREAM CG8206 & 1 other INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	17354682	3L_17354682_SNP [dm3] 3L_17361582_SNP [dm6]	C	T	8.265e^-6	0.052	UTR_3_PRIME tap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	27016519	3R_27016519_SNP [dm3] 3R_31190797_SNP [dm6]	C	T	8.287e^-6	0.052	INTRON mesh
3R	13467688	3R_13467688_SNP [dm3] 3R_17641966_SNP [dm6]	A	T	8.293e^-6	0.052	INTRON CG43175
3R	26470998	3R_26470998_SNP [dm3] 3R_30645276_SNP [dm6]	G	A	8.333e^-6	0.052	DOWNSTREAM PH4alphaPV INTRON CG31013	TF binding site mE1_TFBS_ftz_f1
2R	12340469	2R_12340469_SNP [dm3] 2R_16452964_SNP [dm6]	C	A	8.341e^-6	0.052	INTERGENIC
3L	20910493	3L_20910493_SNP [dm3] 3L_20917393_SNP [dm6]	A	G	8.383e^-6	0.052	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1968513	2L_1968513_SNP [dm3] 2L_1968513_SNP [dm6]	A	C	8.393e^-6	0.052	INTRON erm
2L	17155578	2L_17155578_SNP [dm3] 2L_17155578_SNP [dm6]	T	C	8.512e^-6	0.052	INTRON beat-IIIa & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13468316	3R_13468316_SNP [dm3] 3R_17642594_SNP [dm6]	C	T	8.600e^-6	0.052	INTRON CG43175
3R	13473766	3R_13473766_SNP [dm3] 3R_17648044_SNP [dm6]	G	A	8.600e^-6	0.052	NON_SYNONYMOUS_CODING CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	13474448	3R_13474448_SNP [dm3] 3R_17648726_SNP [dm6]	C	G	8.600e^-6	0.052	INTRON CG14322
3R	13474451	3R_13474451_INS [dm3] 3R_17648729_INS [dm6]	T	TT	8.600e^-6	0.052	INTRON CG14322
3R	13474466	3R_13474466_SNP [dm3] 3R_17648744_SNP [dm6]	A	G	8.600e^-6	0.052	INTRON CG14322
3R	13474531	3R_13474531_SNP [dm3] 3R_17648809_SNP [dm6]	G	A	8.600e^-6	0.052	INTRON CG14322
3R	13497794	3R_13497794_SNP [dm3] 3R_17672072_SNP [dm6]	C	T	8.600e^-6	0.052	SYNONYMOUS_CODING ald	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7984398	3R_7984398_SNP [dm3] 3R_12158676_SNP [dm6]	C	A	8.613e^-6	0.052	UPSTREAM dpr15 INTERGENIC
3L	998783	3L_998783_SNP [dm3] 3L_998783_SNP [dm6]	T	A	8.642e^-6	0.052	INTRON trio
2L	2182111	2L_2182111_SNP [dm3] 2L_2182111_SNP [dm6]	A	T	8.684e^-6	0.052	EXON CR43751	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18386459	2L_18386459_SNP [dm3] 2L_18386459_SNP [dm6]	A	G	8.766e^-6	0.052	UTR_3_PRIME Fas3 INTRON Fas3
2R	6266534	2R_6266534_SNP [dm3] 2R_10379029_SNP [dm6]	C	G	8.907e^-6	0.053	NON_SYNONYMOUS_CODING Ir47a INTRON CG42732
2L	14616790	2L_14616790_SNP [dm3] 2L_14616790_SNP [dm6]	C	T	8.932e^-6	0.053	SYNONYMOUS_CODING Adh UTR_5_PRIME Adhr UPSTREAM Adhr INTRON osp	TF binding site mE1_TFBS_cad
2L	20932928	2L_20932928_SNP [dm3] 2L_20932928_SNP [dm6]	C	A	8.944e^-6	0.053	SYNONYMOUS_CODING CG9270
3L	4970259	3L_4970259_SNP [dm3] 3L_4970259_SNP [dm6]	T	C	9.068e^-6	0.054	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10543214	3L_10543214_INS [dm3] 3L_10550114_INS [dm6]	G	GG	9.265e^-6	0.055	INTRON A2bp1
3L	10886851	3L_10886851_INS [dm3] 3L_10893751_INS [dm6]	T	TATT	9.311e^-6	0.055	UPSTREAM Cpr67Fb EXON CR45171
3R	27067756	3R_27067756_SNP [dm3] 3R_31242034_SNP [dm6]	C	T	9.454e^-6	0.055	INTRON qless
3L	17144374	3L_17144374_DEL [dm3] 3L_17151274_DEL [dm6]	GACTT	G	9.478e^-6	0.055	INTRON Rbp6
3R	27219002	3R_27219002_SNP [dm3] 3R_31393280_SNP [dm6]	A	G	9.517e^-6	0.055	NON_SYNONYMOUS_CODING CG31204 DOWNSTREAM CG31002
3R	25623545	3R_25623545_SNP [dm3] 3R_29797823_SNP [dm6]	G	A	9.534e^-6	0.055	INTRON CG7837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13460116	3R_13460116_SNP [dm3] 3R_17634394_SNP [dm6]	G	A	9.584e^-6	0.055	INTRON CG43175
3R	13460121	3R_13460121_SNP [dm3] 3R_17634399_SNP [dm6]	C	G	9.584e^-6	0.055	INTRON CG43175
3R	13460127	3R_13460127_SNP [dm3] 3R_17634405_SNP [dm6]	C	T	9.584e^-6	0.055	INTRON CG43175
3R	8606334	3R_8606334_SNP [dm3] 3R_12780612_SNP [dm6]	T	C	9.746e^-6	0.056	INTRON beat-Vc
2R	7939212	2R_7939212_SNP [dm3] 2R_12051707_SNP [dm6]	C	G	9.782e^-6	0.056	UTR_5_PRIME CG30039
2L	11171302	2L_11171302_SNP [dm3] 2L_11171302_SNP [dm6]	G	A	9.869e^-6	0.056	SYNONYMOUS_CODING Vm32E UPSTREAM Ca-beta INTRON Ca-beta	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	17081850	3R_17081850_SNP [dm3] 3R_21256128_SNP [dm6]	C	G	9.869e^-6	0.056	INTRON ETHR
X	5431466	X_5431466_SNP [dm3] X_5537433_SNP [dm6]	G	C	9.869e^-6	0.056	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9708546	2L_9708546_SNP [dm3] 2L_9708546_SNP [dm6]	A	T	9.970e^-6	0.056	UTR_3_PRIME pelo DOWNSTREAM CG4364	TF binding site mE1_TFBS_HSA
3R	17952342	3R_17952342_SNP [dm3] 3R_22126620_SNP [dm6]	T	C	1.008e^-5	0.057	INTRON CG42390
2R	12340447	2R_12340447_SNP [dm3] 2R_16452942_SNP [dm6]	A	G	1.019e^-5	0.057	INTERGENIC
3R	13486413	3R_13486413_SNP [dm3] 3R_17660691_SNP [dm6]	T	C	1.028e^-5	0.057	INTRON CG14322
3L	19689535	3L_19689535_SNP [dm3] 3L_19696435_SNP [dm6]	A	G	1.032e^-5	0.057	INTERGENIC
3L	1031820	3L_1031820_SNP [dm3] 3L_1031820_SNP [dm6]	C	A	1.039e^-5	0.057	INTRON trio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	1031824	3L_1031824_SNP [dm3] 3L_1031824_SNP [dm6]	T	A	1.039e^-5	0.057	INTRON trio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	3307675	2R_3307675_SNP [dm3] 2R_7420170_SNP [dm6]	T	A	1.043e^-5	0.057	INTRON so	TF binding site BDTNP1_TFBS_dl
3R	13474082	3R_13474082_SNP [dm3] 3R_17648360_SNP [dm6]	C	T	1.044e^-5	0.057	INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	12758230	3L_12758230_SNP [dm3] 3L_12765130_SNP [dm6]	A	T	1.045e^-5	0.057	SPLICE_SITE_REGION CG32113 INTRON CG32113	TF binding site mE1_TFBS_cad
3R	18460204	3R_18460204_SNP [dm3] 3R_22634482_SNP [dm6]	G	A	1.055e^-5	0.058	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21949586	3R_21949586_SNP [dm3] 3R_26123864_SNP [dm6]	T	G	1.069e^-5	0.058	INTRON CG31324
3L	17143330	3L_17143330_SNP [dm3] 3L_17150230_SNP [dm6]	A	T	1.073e^-5	0.058	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	18229215	X_18229215_SNP [dm3] X_18335182_SNP [dm6]	A	G	1.078e^-5	0.058	INTRON CG6123
3L	16988712	3L_16988712_SNP [dm3] 3L_16995612_SNP [dm6]	A	G	1.079e^-5	0.058	SYNONYMOUS_CODING CG3764	TF binding site mE1_TFBS_cad
3R	17952196	3R_17952196_SNP [dm3] 3R_22126474_SNP [dm6]	A	T	1.081e^-5	0.058	SPLICE_SITE_REGION CG42390 INTRON CG42390	TF binding site mE1_TFBS_cad
3R	13474446	3R_13474446_SNP [dm3] 3R_17648724_SNP [dm6]	T	A	1.084e^-5	0.058	INTRON CG14322
3R	13494498	3R_13494498_SNP [dm3] 3R_17668776_SNP [dm6]	C	T	1.087e^-5	0.058	DOWNSTREAM CR45045 & 2 others INTRON CG14322	TF binding site mE1_TFBS_inv
3R	8363552	3R_8363552_SNP [dm3] 3R_12537830_SNP [dm6]	A	G	1.106e^-5	0.059	INTRON Octbeta3R
3R	17611407	3R_17611407_SNP [dm3] 3R_21785685_SNP [dm6]	C	T	1.112e^-5	0.059	UTR_3_PRIME CASK DOWNSTREAM CASK EXON CRG
3R	26470999	3R_26470999_SNP [dm3] 3R_30645277_SNP [dm6]	G	A	1.113e^-5	0.059	SPLICE_SITE_REGION CG31013 DOWNSTREAM PH4alphaPV INTRON CG31013	TF binding site mE1_TFBS_ftz_f1
2L	8544600	2L_8544600_SNP [dm3] 2L_8544600_SNP [dm6]	C	T	1.119e^-5	0.059	UTR_5_PRIME Sema-1a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	14328875	3L_14328875_SNP [dm3] 3L_14335775_SNP [dm6]	C	A	1.124e^-5	0.059	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14355197	3R_14355197_SNP [dm3] 3R_18529475_SNP [dm6]	G	C	1.147e^-5	0.06	INTRON fru
2R	6266779	2R_6266779_SNP [dm3] 2R_10379274_SNP [dm6]	T	G	1.158e^-5	0.061	SYNONYMOUS_CODING Ir47a INTRON CG42732
2R	9242060	2R_9242060_SNP [dm3] 2R_13354555_SNP [dm6]	C	T	1.167e^-5	0.061	UPSTREAM CG17048 & 1 other INTERGENIC
X	6778184	X_6778184_SNP [dm3] X_6884151_SNP [dm6]	T	A	1.173e^-5	0.061	INTERGENIC
2R	7905217	2R_7905217_SNP [dm3] 2R_12017712_SNP [dm6]	A	G	1.178e^-5	0.061	INTRON otk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_sens
X	17158969	X_17158969_SNP [dm3] X_17264936_SNP [dm6]	G	C	1.179e^-5	0.061	UPSTREAM f INTRON f
3R	22876344	3R_22876344_SNP [dm3] 3R_27050622_SNP [dm6]	G	C	1.183e^-5	0.061	UTR_3_PRIME TwdlT INTRON RYa-R
X	3987884	X_3987884_DEL [dm3] X_4093851_DEL [dm6]	CCCCACTCC	C	1.186e^-5	0.061	INTERGENIC
3R	26494805	3R_26494805_SNP [dm3] 3R_30669083_SNP [dm6]	A	G	1.188e^-5	0.061	INTERGENIC
3R	22518114	3R_22518114_SNP [dm3] 3R_26692392_SNP [dm6]	C	A	1.194e^-5	0.061	DOWNSTREAM TwdlQ INTERGENIC
X	20369141	X_20369141_SNP [dm3] X_20498114_SNP [dm6]	G	T	1.204e^-5	0.062	INTRON RhoGAP19D
2L	16371467	2L_16371467_SNP [dm3] 2L_16371467_SNP [dm6]	G	A	1.210e^-5	0.062	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	20369144	X_20369144_SNP [dm3] X_20498117_SNP [dm6]	G	A	1.221e^-5	0.062	INTRON RhoGAP19D
3L	9986074	3L_9986074_SNP [dm3] 3L_9992974_SNP [dm6]	A	G	1.225e^-5	0.062	INTRON dpr6
3R	21620172	3R_21620172_SNP [dm3] 3R_25794450_SNP [dm6]	A	T	1.229e^-5	0.062	UPSTREAM CR43634 & 1 other INTERGENIC
3L	1037242	3L_1037242_DEL [dm3] 3L_1037242_DEL [dm6]	TT	T	1.239e^-5	0.062	UTR_3_PRIME bab1 DOWNSTREAM CG9205
X	21284039	X_21284039_SNP [dm3] X_21413012_SNP [dm6]	C	A	1.240e^-5	0.062	INTERGENIC
3R	17845349	3R_17845349_SNP [dm3] 3R_22019627_SNP [dm6]	T	C	1.243e^-5	0.062	UTR_3_PRIME CG6455 UPSTREAM CG6439 DOWNSTREAM CG6455	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7905297	2R_7905297_SNP [dm3] 2R_12017792_SNP [dm6]	T	C	1.243e^-5	0.062	INTRON otk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_eve
2L	11205682	2L_11205682_SNP [dm3] 2L_11205682_SNP [dm6]	C	T	1.257e^-5	0.063	EXON CR43859
2L	11205740	2L_11205740_DEL [dm3] 2L_11205740_DEL [dm6]	GA	G	1.257e^-5	0.063	EXON CR43859
X	9367404	X_9367404_SNP [dm3] X_9473371_SNP [dm6]	G	T	1.264e^-5	0.063	INTRON mgl	TF binding site mE1_TFBS_HSA
2R	9734030	2R_9734030_SNP [dm3] 2R_13846525_SNP [dm6]	A	C	1.287e^-5	0.064	UTR_5_PRIME CG30484 UPSTREAM Syngr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20369135	X_20369135_SNP [dm3] X_20498108_SNP [dm6]	A	G	1.291e^-5	0.064	INTRON RhoGAP19D
3L	3749365	3L_3749365_SNP [dm3] 3L_3749365_SNP [dm6]	A	T	1.299e^-5	0.064	INTRON CG32264
3R	27067738	3R_27067738_SNP [dm3] 3R_31242016_SNP [dm6]	G	T	1.305e^-5	0.064	INTRON qless
3L	21091928	3L_21091928_SNP [dm3] 3L_21098828_SNP [dm6]	T	G	1.311e^-5	0.064	INTRON ko
2L	17060477	2L_17060477_SNP [dm3] 2L_17060477_SNP [dm6]	T	A	1.356e^-5	0.066	INTERGENIC
3R	17674507	3R_17674507_MNP [dm3] 3R_21848785_MNP [dm6]	TGT	GAG	1.363e^-5	0.067	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	26301540	3R_26301540_SNP [dm3] 3R_30475818_SNP [dm6]	G	T	1.366e^-5	0.067	UPSTREAM spdo INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	26495003	3R_26495003_SNP [dm3] 3R_30669281_SNP [dm6]	A	C	1.388e^-5	0.067	INTERGENIC
2L	13608071	2L_13608071_SNP [dm3] 2L_13608071_SNP [dm6]	A	G	1.393e^-5	0.067	INTRON kuz
3L	18755854	3L_18755854_SNP [dm3] 3L_18762754_SNP [dm6]	T	C	1.412e^-5	0.068	INTRON ftz-f1
3L	1029170	3L_1029170_SNP [dm3] 3L_1029170_SNP [dm6]	C	T	1.425e^-5	0.069	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad
3R	17952168	3R_17952168_SNP [dm3] 3R_22126446_SNP [dm6]	C	A	1.432e^-5	0.069	SYNONYMOUS_CODING CG42390	TF binding site mE1_TFBS_cad
3L	9054943	3L_9054943_SNP [dm3] 3L_9061843_SNP [dm6]	C	T	1.442e^-5	0.069	INTRON Argk
3R	12079848	3R_12079848_SNP [dm3] 3R_16254126_SNP [dm6]	G	A	1.460e^-5	0.07	INTRON tara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	6901699	X_6901699_DEL [dm3] X_7007666_DEL [dm6]	AA	A	1.476e^-5	0.07	INTRON Inx7
3R	26030718	3R_26030718_SNP [dm3] 3R_30204996_SNP [dm6]	A	G	1.478e^-5	0.07	INTERGENIC
2L	8240404	2L_8240404_SNP [dm3] 2L_8240404_SNP [dm6]	T	A	1.478e^-5	0.07	UPSTREAM Pvr DOWNSTREAM Spn28F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	21284044	X_21284044_INS [dm3] X_21413017_INS [dm6]	T	TCATATAATAT...	1.489e^-5	0.07	INTERGENIC
2L	3450550	2L_3450550_SNP [dm3] 2L_3450550_SNP [dm6]	A	G	1.513e^-5	0.07	SYNONYMOUS_CODING Snx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11732454	3L_11732454_SNP [dm3] 3L_11739354_SNP [dm6]	T	C	1.535e^-5	0.07	INTRON CG6024
2L	10575192	2L_10575192_SNP [dm3] 2L_10575192_SNP [dm6]	G	T	1.536e^-5	0.07	DOWNSTREAM w-cup INTRON Trim9
3L	4969716	3L_4969716_SNP [dm3] 3L_4969716_SNP [dm6]	G	T	1.540e^-5	0.07	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4969760	3L_4969760_DEL [dm3] 3L_4969760_DEL [dm6]	CAC	C	1.540e^-5	0.07	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4969765	3L_4969765_SNP [dm3] 3L_4969765_SNP [dm6]	A	T	1.540e^-5	0.07	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4969939	3L_4969939_SNP [dm3] 3L_4969939_SNP [dm6]	C	T	1.540e^-5	0.07	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4969951	3L_4969951_DEL [dm3] 3L_4969951_DEL [dm6]	TTTCGCCT	T	1.540e^-5	0.07	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4970169	3L_4970169_SNP [dm3] 3L_4970169_SNP [dm6]	T	A	1.540e^-5	0.07	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4970180	3L_4970180_SNP [dm3] 3L_4970180_SNP [dm6]	T	A	1.540e^-5	0.07	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	109167	2L_109167_DEL [dm3] 2L_109167_DEL [dm6]	CCCGGTGACCAAG...	C	1.540e^-5	0.07	UPSTREAM Sam-S INTRON Sam-S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4821017	2L_4821017_SNP [dm3] 2L_4821017_SNP [dm6]	G	A	1.541e^-5	0.07	UPSTREAM CG15628 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	13716523	3R_13716523_SNP [dm3] 3R_17890801_SNP [dm6]	T	G	1.545e^-5	0.07	SPLICE_SITE_REGION Rim INTRON Rim
3R	13716551	3R_13716551_SNP [dm3] 3R_17890829_SNP [dm6]	T	G	1.545e^-5	0.07	INTRON Rim
3R	13717429	3R_13717429_SNP [dm3] 3R_17891707_SNP [dm6]	T	A	1.545e^-5	0.07	INTRON Rim
3L	14335374	3L_14335374_SNP [dm3] 3L_14342274_SNP [dm6]	C	A	1.547e^-5	0.07	INTRON fz
2R	6280794	2R_6280794_SNP [dm3] 2R_10393289_SNP [dm6]	G	C	1.558e^-5	0.07	INTRON CG42732
2R	18022503	2R_18022503_SNP [dm3] 2R_22134998_SNP [dm6]	A	T	1.561e^-5	0.07	INTERGENIC
3R	25396362	3R_25396362_SNP [dm3] 3R_29570640_SNP [dm6]	A	C	1.561e^-5	0.07	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4969604	3L_4969604_SNP [dm3] 3L_4969604_SNP [dm6]	T	A	1.572e^-5	0.071	INTRON Con	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9873799	2L_9873799_SNP [dm3] 2L_9873799_SNP [dm6]	G	A	1.590e^-5	0.071	INTRON nAChRalpha6
3R	13476015	3R_13476015_SNP [dm3] 3R_17650293_SNP [dm6]	T	C	1.614e^-5	0.072	INTRON CG14322
2L	8240524	2L_8240524_SNP [dm3] 2L_8240524_SNP [dm6]	C	T	1.618e^-5	0.072	NON_SYNONYMOUS_CODING Spn28F UPSTREAM Pvr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11511187	2R_11511187_SNP [dm3] 2R_15623682_SNP [dm6]	G	A	1.635e^-5	0.073	INTRON CG42524	TF binding site mE1_TFBS_chinmo
3R	21620173	3R_21620173_SNP [dm3] 3R_25794451_SNP [dm6]	T	C	1.647e^-5	0.073	UPSTREAM CR43634 & 1 other INTERGENIC
3L	1139881	3L_1139881_SNP [dm3] 3L_1139881_SNP [dm6]	G	C	1.659e^-5	0.073	DOWNSTREAM bab2 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	13495408	3R_13495408_SNP [dm3] 3R_17669686_SNP [dm6]	T	G	1.661e^-5	0.073	UTR_3_PRIME CG14322 DOWNSTREAM CG14322 INTRON CG7523
3L	3872871	3L_3872871_SNP [dm3] 3L_3872871_SNP [dm6]	A	G	1.662e^-5	0.073	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1747302	2L_1747302_SNP [dm3] 2L_1747302_SNP [dm6]	T	C	1.671e^-5	0.074	INTRON CG17646
3L	21102703	3L_21102703_SNP [dm3] 3L_21109603_SNP [dm6]	G	T	1.677e^-5	0.074	INTRON ko	regulatory region REDfly_CRMs
3L	6436886	3L_6436886_DEL [dm3] 3L_6443786_DEL [dm6]	CGGCAGGAAGGAAT...	C	1.680e^-5	0.074	INTRON CG42747
3L	9756272	3L_9756272_SNP [dm3] 3L_9763172_SNP [dm6]	G	A	1.683e^-5	0.074	UPSTREAM CG8177 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21967110	3R_21967110_SNP [dm3] 3R_26141388_SNP [dm6]	T	C	1.690e^-5	0.074	INTERGENIC
3R	9671828	3R_9671828_INS [dm3] 3R_13846106_INS [dm6]	C	TCT	1.703e^-5	0.074	INTERGENIC
2R	10622391	2R_10622391_SNP [dm3] 2R_14734886_SNP [dm6]	G	T	1.706e^-5	0.074	INTERGENIC
3L	3979578	3L_3979578_SNP [dm3] 3L_3979578_SNP [dm6]	C	T	1.706e^-5	0.074	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	12790783	X_12790783_SNP [dm3] X_12896750_SNP [dm6]	G	A	1.720e^-5	0.074	UTR_5_PRIME Pde9 DOWNSTREAM CG32650	TF binding site BDTNP1_TFBS_dl
2R	6320482	2R_6320482_SNP [dm3] 2R_10432977_SNP [dm6]	T	G	1.738e^-5	0.075	INTRON RanBPM	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14208959	2L_14208959_SNP [dm3] 2L_14208959_SNP [dm6]	A	G	1.776e^-5	0.076	INTRON Dyrk2
3R	26976942	3R_26976942_SNP [dm3] 3R_31151220_SNP [dm6]	A	G	1.779e^-5	0.076	INTRON Gycbeta100B
X	9279043	X_9279043_SNP [dm3] X_9385010_SNP [dm6]	G	C	1.792e^-5	0.077	INTRON mgl
3L	12381224	3L_12381224_SNP [dm3] 3L_12388124_SNP [dm6]	G	C	1.806e^-5	0.077	UPSTREAM Ncc69 INTRON Ncc69
3R	13494558	3R_13494558_SNP [dm3] 3R_17668836_SNP [dm6]	A	C	1.806e^-5	0.077	SYNONYMOUS_CODING CG14322 DOWNSTREAM CG7523 & 1 other	TF binding site mE1_TFBS_inv
2L	19258797	2L_19258797_SNP [dm3] 2L_19258797_SNP [dm6]	G	T	1.811e^-5	0.077	DOWNSTREAM CG31797 INTERGENIC
2L	18063541	2L_18063541_SNP [dm3] 2L_18063541_SNP [dm6]	C	T	1.818e^-5	0.077	INTRON rdo
2R	8442773	2R_8442773_SNP [dm3] 2R_12555268_SNP [dm6]	A	G	1.832e^-5	0.077	INTRON fra	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
2R	6254608	2R_6254608_SNP [dm3] 2R_10367103_SNP [dm6]	A	T	1.832e^-5	0.077	INTRON CG42732
2R	12434211	2R_12434211_SNP [dm3] 2R_16546706_SNP [dm6]	A	T	1.833e^-5	0.077	INTERGENIC
2R	18019740	2R_18019740_SNP [dm3] 2R_22132235_SNP [dm6]	G	A	1.838e^-5	0.077	UPSTREAM CG34205 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	9543979	3R_9543979_SNP [dm3] 3R_13718257_SNP [dm6]	T	A	1.846e^-5	0.077	UPSTREAM CG9602 INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4079037	3L_4079037_SNP [dm3] 3L_4079037_SNP [dm6]	G	A	1.848e^-5	0.077	SYNONYMOUS_CODING Gad1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8244562	2L_8244562_SNP [dm3] 2L_8244562_SNP [dm6]	T	G	1.852e^-5	0.077	UTR_3_PRIME CG8086 UPSTREAM CG43057 INTRON CG8086
X	20972542	X_20972542_SNP [dm3] X_21101515_SNP [dm6]	A	C	1.853e^-5	0.077	NON_SYNONYMOUS_CODING CG15446 INTRON stg1 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	1109054	2L_1109054_SNP [dm3] 2L_1109054_SNP [dm6]	G	C	1.862e^-5	0.077	SYNONYMOUS_CODING CG14339 UPSTREAM mtRNApol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	7548072	2L_7548072_SNP [dm3] 2L_7548072_SNP [dm6]	G	A	1.864e^-5	0.077	INTRON RapGAP1
3R	5061448	3R_5061448_SNP [dm3] 3R_9235726_SNP [dm6]	T	A	1.894e^-5	0.078	INTRON pum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	6248561	3L_6248561_SNP [dm3] 3L_6255461_SNP [dm6]	G	C	1.896e^-5	0.078	INTRON Best2
3L	6589642	3L_6589642_SNP [dm3] 3L_6596542_SNP [dm6]	A	C	1.899e^-5	0.078	NON_SYNONYMOUS_CODING ndl
3L	1139878	3L_1139878_SNP [dm3] 3L_1139878_SNP [dm6]	T	G	1.913e^-5	0.079	DOWNSTREAM bab2 INTERGENIC	TF binding site mE1_TFBS_HSA
X	18706634	X_18706634_SNP [dm3] X_18812601_SNP [dm6]	A	T	1.914e^-5	0.079	UPSTREAM CG42450 DOWNSTREAM CG7058 INTERGENIC	transposable element FlyBase
3L	18548761	3L_18548761_SNP [dm3] 3L_18555661_SNP [dm6]	T	A	1.922e^-5	0.079	INTERGENIC
3R	9660279	3R_9660279_SNP [dm3] 3R_13834557_SNP [dm6]	T	A	1.928e^-5	0.079	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2
3R	11847305	3R_11847305_SNP [dm3] 3R_16021583_SNP [dm6]	C	T	1.941e^-5	0.079	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	13238091	2R_13238091_SNP [dm3] 2R_17350586_SNP [dm6]	G	A	1.946e^-5	0.079	INTRON mbl
2R	11520491	2R_11520491_SNP [dm3] 2R_15632986_SNP [dm6]	C	G	1.961e^-5	0.08	INTRON CG42524
3R	13493888	3R_13493888_SNP [dm3] 3R_17668166_SNP [dm6]	T	A	1.964e^-5	0.08	UPSTREAM tRNA:CR31576 DOWNSTREAM CR45045 & 1 other INTRON CG14322	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	11521058	2R_11521058_SNP [dm3] 2R_15633553_SNP [dm6]	C	T	1.973e^-5	0.08	INTRON CG42524
3L	3748947	3L_3748947_SNP [dm3] 3L_3748947_SNP [dm6]	T	G	1.975e^-5	0.08	INTRON CG32264
2L	2072059	2L_2072059_SNP [dm3] 2L_2072059_SNP [dm6]	G	A	1.993e^-5	0.08	INTRON dpr3
2L	15349868	2L_15349868_SNP [dm3] 2L_15349868_SNP [dm6]	A	T	2.012e^-5	0.081	INTERGENIC
2L	5646114	2L_5646114_INS [dm3] 2L_5646114_INS [dm6]	T	TATAT	2.020e^-5	0.081	INTRON CG31646
3L	1031827	3L_1031827_SNP [dm3] 3L_1031827_SNP [dm6]	C	T	2.024e^-5	0.081	INTRON trio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	22643842	3R_22643842_SNP [dm3] 3R_26818120_SNP [dm6]	G	A	2.029e^-5	0.081	INTRON Tl
2L	1613731	2L_1613731_SNP [dm3] 2L_1613731_SNP [dm6]	T	A	2.041e^-5	0.081	INTRON RFeSP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	10818441	3L_10818441_SNP [dm3] 3L_10825341_SNP [dm6]	A	T	2.088e^-5	0.083	EXON CR45246
3R	13964191	3R_13964191_SNP [dm3] 3R_18138469_SNP [dm6]	G	A	2.089e^-5	0.083	INTERGENIC
3R	18962341	3R_18962341_SNP [dm3] 3R_23136619_SNP [dm6]	T	A	2.093e^-5	0.083	INTRON hh
3R	11637691	3R_11637691_SNP [dm3] 3R_15811969_SNP [dm6]	G	C	2.110e^-5	0.083	UPSTREAM alpha-Man-IIb & 1 other INTRON alpha-Man-IIb
2R	13205718	2R_13205718_SNP [dm3] 2R_17318213_SNP [dm6]	T	C	2.120e^-5	0.084	INTRON mbl
2L	6125081	2L_6125081_SNP [dm3] 2L_6125081_SNP [dm6]	C	T	2.129e^-5	0.084	UPSTREAM Arpc4 DOWNSTREAM stai & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	19390080	3L_19390080_SNP [dm3] 3L_19396980_SNP [dm6]	G	A	2.143e^-5	0.084	INTRON CG32206
3L	9756323	3L_9756323_SNP [dm3] 3L_9763223_SNP [dm6]	A	T	2.143e^-5	0.084	UPSTREAM CG8177 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	21091550	3L_21091550_SNP [dm3] 3L_21098450_SNP [dm6]	T	A	2.154e^-5	0.084	INTRON ko
3L	9208081	3L_9208081_SNP [dm3] 3L_9214981_SNP [dm6]	C	T	2.157e^-5	0.084	SYNONYMOUS_CODING CG4476
2R	6259630	2R_6259630_SNP [dm3] 2R_10372125_SNP [dm6]	T	G	2.158e^-5	0.084	INTRON CG42732	TF binding site mE1_TFBS_inv
2R	6260981	2R_6260981_SNP [dm3] 2R_10373476_SNP [dm6]	C	T	2.158e^-5	0.084	INTRON CG42732
2R	6261651	2R_6261651_SNP [dm3] 2R_10374146_SNP [dm6]	C	T	2.158e^-5	0.084	INTRON CG42732
2R	13073883	2R_13073883_SNP [dm3] 2R_17186378_SNP [dm6]	T	A	2.177e^-5	0.084	DOWNSTREAM CR44387 INTERGENIC
2R	8442365	2R_8442365_SNP [dm3] 2R_12554860_SNP [dm6]	T	A	2.178e^-5	0.084	INTRON fra	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
3R	23805367	3R_23805367_SNP [dm3] 3R_27979645_SNP [dm6]	G	T	2.178e^-5	0.084	INTRON betaTub97EF
3R	19451895	3R_19451895_SNP [dm3] 3R_23626173_SNP [dm6]	T	C	2.180e^-5	0.084	INTRON CG31145
X	19254430	X_19254430_SNP [dm3] X_19360397_SNP [dm6]	C	T	2.183e^-5	0.084	INTRON kek5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	2393607	2R_2393607_SNP [dm3] 2R_6506102_SNP [dm6]	T	A	2.188e^-5	0.084	INTRON jing	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	9758506	3L_9758506_SNP [dm3] 3L_9765406_SNP [dm6]	T	A	2.204e^-5	0.084	INTRON CG8177
2L	4821433	2L_4821433_SNP [dm3] 2L_4821433_SNP [dm6]	T	A	2.217e^-5	0.085	UPSTREAM CG15628 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26030926	3R_26030926_SNP [dm3] 3R_30205204_SNP [dm6]	C	T	2.240e^-5	0.085	INTERGENIC
3R	9830656	3R_9830656_SNP [dm3] 3R_14004934_SNP [dm6]	G	A	2.267e^-5	0.086	INTRON rdx
3L	12698603	3L_12698603_SNP [dm3] 3L_12705503_SNP [dm6]	A	C	2.269e^-5	0.086	INTRON mirr
2R	17412273	2R_17412273_SNP [dm3] 2R_21524768_SNP [dm6]	A	G	2.272e^-5	0.086	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
X	11315765	X_11315765_SNP [dm3] X_11421732_SNP [dm6]	G	T	2.290e^-5	0.086	INTERGENIC
3R	21290982	3R_21290982_SNP [dm3] 3R_25465260_SNP [dm6]	C	T	2.320e^-5	0.087	INTRON Fur1
3R	4767697	3R_4767697_SNP [dm3] 3R_8941975_SNP [dm6]	T	C	2.328e^-5	0.088	SYNONYMOUS_CODING skap DOWNSTREAM CG11964	TF binding site mE1_TFBS_sens
2L	8279135	2L_8279135_SNP [dm3] 2L_8279135_SNP [dm6]	G	T	2.333e^-5	0.088	INTRON Btk29A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	7506552	3R_7506552_SNP [dm3] 3R_11680830_SNP [dm6]	T	C	2.342e^-5	0.088	SYNONYMOUS_CODING Ho DOWNSTREAM CG6830
2R	8557894	2R_8557894_DEL [dm3] 2R_12670389_DEL [dm6]	AAA	G	2.352e^-5	0.088	UPSTREAM nemy DOWNSTREAM CG42708 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	6367239	2L_6367239_SNP [dm3] 2L_6367239_SNP [dm6]	T	A	2.364e^-5	0.088	UPSTREAM CG9505 INTERGENIC
3R	13682363	3R_13682363_SNP [dm3] 3R_17856641_SNP [dm6]	G	T	2.366e^-5	0.088	INTRON tinc
3R	19451744	3R_19451744_SNP [dm3] 3R_23626022_SNP [dm6]	T	C	2.378e^-5	0.088	INTRON CG31145
3L	4966913	3L_4966913_SNP [dm3] 3L_4966913_SNP [dm6]	A	T	2.403e^-5	0.089	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7741424	3L_7741424_SNP [dm3] 3L_7748324_SNP [dm6]	C	T	2.410e^-5	0.089	SYNONYMOUS_CODING CG13685 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10917098	3L_10917098_SNP [dm3] 3L_10923998_SNP [dm6]	G	C	2.433e^-5	0.09	INTERGENIC
3R	17674503	3R_17674503_SNP [dm3] 3R_21848781_SNP [dm6]	G	T	2.467e^-5	0.091	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	6261048	2R_6261048_SNP [dm3] 2R_10373543_SNP [dm6]	C	A	2.505e^-5	0.092	INTRON CG42732
3R	19336465	3R_19336465_DEL [dm3] 3R_23510743_DEL [dm6]	AA	A	2.517e^-5	0.092	INTERGENIC
3L	9866104	3L_9866104_SNP [dm3] 3L_9873004_SNP [dm6]	C	T	2.536e^-5	0.093	INTERGENIC
3L	5490477	3L_5490477_SNP [dm3] 3L_5497377_SNP [dm6]	A	C	2.554e^-5	0.093	DOWNSTREAM blanks INTERGENIC
3R	16532174	3R_16532174_SNP [dm3] 3R_20706452_SNP [dm6]	T	C	2.569e^-5	0.094	INTRON Oamb
2L	19256654	2L_19256654_SNP [dm3] 2L_19256654_SNP [dm6]	C	T	2.602e^-5	0.095	INTERGENIC
3R	13473760	3R_13473760_SNP [dm3] 3R_17648038_SNP [dm6]	C	A	2.622e^-5	0.095	NON_SYNONYMOUS_CODING CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	13205952	2R_13205952_INS [dm3] 2R_17318447_INS [dm6]	A	AT	2.624e^-5	0.095	INTRON mbl
2R	11782225	2R_11782225_SNP [dm3] 2R_15894720_SNP [dm6]	A	T	2.628e^-5	0.095	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	17277384	3R_17277384_SNP [dm3] 3R_21451662_SNP [dm6]	G	A	2.645e^-5	0.096	INTERGENIC
3L	11308235	3L_11308235_SNP [dm3] 3L_11315135_SNP [dm6]	T	A	2.669e^-5	0.096	UPSTREAM CR44361 INTERGENIC
3L	18439282	3L_18439282_SNP [dm3] 3L_18446182_SNP [dm6]	T	G	2.670e^-5	0.096	INTERGENIC
3L	9419801	3L_9419801_SNP [dm3] 3L_9426701_SNP [dm6]	A	G	2.688e^-5	0.096	START_GAINED CG3967 UTR_5_PRIME CG3967 UPSTREAM Shc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	2851448	2L_2851448_SNP [dm3] 2L_2851448_SNP [dm6]	G	T	2.689e^-5	0.096	INTRON CG3104
3R	21920766	3R_21920766_SNP [dm3] 3R_26095044_SNP [dm6]	C	T	2.697e^-5	0.096	INTRON dys	regulatory region REDfly_CRMs
3L	6558071	3L_6558071_SNP [dm3] 3L_6564971_SNP [dm6]	G	A	2.729e^-5	0.097	SPLICE_SITE_REGION jv SYNONYMOUS_CODING jv INTRON CG18769	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	9978924	3L_9978924_SNP [dm3] 3L_9985824_SNP [dm6]	T	A	2.736e^-5	0.097	INTRON dpr6
X	4457545	X_4457545_SNP [dm3] X_4563512_SNP [dm6]	A	G	2.741e^-5	0.097	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19628999	2L_19628999_SNP [dm3] 2L_19628999_SNP [dm6]	T	A	2.741e^-5	0.097	INTRON Lar
X	21867241	X_21867241_SNP [dm3] X_22465405_SNP [dm6]	T	C	2.743e^-5	0.097	SYNONYMOUS_CODING CG14619 INTRON CG14619
3L	951353	3L_951353_SNP [dm3] 3L_951353_SNP [dm6]	G	A	2.767e^-5	0.098	INTRON Glut1
3R	22049166	3R_22049166_SNP [dm3] 3R_26223444_SNP [dm6]	T	C	2.787e^-5	0.098	INTERGENIC
3R	18011042	3R_18011042_SNP [dm3] 3R_22185320_SNP [dm6]	T	C	2.793e^-5	0.098	INTRON SKIP
3L	6245483	3L_6245483_INS [dm3] 3L_6252383_INS [dm6]	G	GG	2.802e^-5	0.098	INTRON Best2
3R	7892307	3R_7892307_SNP [dm3] 3R_12066585_SNP [dm6]	A	G	2.804e^-5	0.098	INTERGENIC
2L	7473909	2L_7473909_SNP [dm3] 2L_7473909_SNP [dm6]	A	G	2.830e^-5	0.099	UPSTREAM CG6441 INTRON Ziz	TF binding site mE1_TFBS_inv
2R	8851064	2R_8851064_SNP [dm3] 2R_12963559_SNP [dm6]	T	C	2.835e^-5	0.099	INTERGENIC
3R	13495669	3R_13495669_DEL [dm3] 3R_17669947_DEL [dm6]	ATA	A	2.841e^-5	0.099	UTR_3_PRIME CG14322 DOWNSTREAM CG14322 INTRON CG7523	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18490591	2R_18490591_SNP [dm3] 2R_22603086_SNP [dm6]	T	C	2.850e^-5	0.099	SYNONYMOUS_CODING CG4294
2R	18490662	2R_18490662_SNP [dm3] 2R_22603157_SNP [dm6]	G	T	2.850e^-5	0.099	NON_SYNONYMOUS_CODING CG4294
3R	15202204	3R_15202204_SNP [dm3] 3R_19376482_SNP [dm6]	G	A	2.857e^-5	0.099	SYNONYMOUS_CODING CG31245 UPSTREAM CG31404 INTRON Ino80	TF binding site mE1_TFBS_sens
2L	11492943	2L_11492943_SNP [dm3] 2L_11492943_SNP [dm6]	A	C	2.869e^-5	0.099	INTERGENIC
3L	21028780	3L_21028780_DEL [dm3] 3L_21035680_DEL [dm6]	AGATAGTATTCATCTTTAAA...	A	2.877e^-5	0.099	INTRON siz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	27067772	3R_27067772_SNP [dm3] 3R_31242050_SNP [dm6]	C	T	2.880e^-5	0.099	INTRON qless
3R	17277343	3R_17277343_SNP [dm3] 3R_21451621_SNP [dm6]	T	C	2.888e^-5	0.099	INTERGENIC
2R	12170675	2R_12170675_SNP [dm3] 2R_16283170_SNP [dm6]	G	A	2.892e^-5	0.099	UPSTREAM CG9068 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	14206885	2L_14206885_SNP [dm3] 2L_14206885_SNP [dm6]	C	T	2.916e^-5	0.1	INTRON Dyrk2
2L	1923130	2L_1923130_SNP [dm3] 2L_1923130_SNP [dm6]	G	C	2.919e^-5	0.1	INTRON CG7337
2L	20505746	2L_20505746_SNP [dm3] 2L_20505746_SNP [dm6]	C	A	2.933e^-5	0.1	INTERGENIC
2L	3714650	2L_3714650_SNP [dm3] 2L_3714650_SNP [dm6]	C	A	2.957e^-5	0.101	SYNONYMOUS_CODING CG2818 UTR_5_PRIME CG2818	TF binding site mE1_TFBS_sens
3R	13717637	3R_13717637_SNP [dm3] 3R_17891915_SNP [dm6]	C	A	2.974e^-5	0.101	INTRON Rim
2L	14776941	2L_14776941_SNP [dm3] 2L_14776941_SNP [dm6]	C	T	2.984e^-5	0.101	INTERGENIC
3R	18627129	3R_18627129_SNP [dm3] 3R_22801407_SNP [dm6]	C	T	2.998e^-5	0.102	INTERGENIC
3R	17674510	3R_17674510_DEL [dm3] 3R_21848788_DEL [dm6]	ACAA	A	3.000e^-5	0.102	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	19336471	3R_19336471_SNP [dm3] 3R_23510749_SNP [dm6]	A	C	3.039e^-5	0.103	INTERGENIC
3L	9971234	3L_9971234_SNP [dm3] 3L_9978134_SNP [dm6]	A	G	3.039e^-5	0.103	INTRON dpr6
3R	19358594	3R_19358594_SNP [dm3] 3R_23532872_SNP [dm6]	A	T	3.062e^-5	0.103	DOWNSTREAM CG10170 INTERGENIC
3L	11339291	3L_11339291_SNP [dm3] 3L_11346191_SNP [dm6]	G	C	3.063e^-5	0.103	INTERGENIC
3R	13636773	3R_13636773_SNP [dm3] 3R_17811051_SNP [dm6]	A	G	3.080e^-5	0.103	UTR_5_PRIME CG18012 UPSTREAM tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
X	9939263	X_9939263_SNP [dm3] X_10045230_SNP [dm6]	T	C	3.091e^-5	0.104	UTR_3_PRIME Cht6 DOWNSTREAM CR45219 INTRON Cht6 EXON CR45185
3L	5347072	3L_5347072_SNP [dm3] 3L_5353972_SNP [dm6]	A	T	3.100e^-5	0.104	INTRON lama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	20526245	2L_20526245_DEL [dm3] 2L_20526245_DEL [dm6]	TAAACAACATGTATCTAAAA...	T	3.113e^-5	0.104	INTERGENIC
3R	25799413	3R_25799413_SNP [dm3] 3R_29973691_SNP [dm6]	G	C	3.114e^-5	0.104	INTERGENIC
X	18706566	X_18706566_SNP [dm3] X_18812533_SNP [dm6]	T	C	3.129e^-5	0.104	UPSTREAM CG42450 DOWNSTREAM CG7058 INTERGENIC	transposable element FlyBase
2R	6268334	2R_6268334_SNP [dm3] 2R_10380829_SNP [dm6]	C	T	3.166e^-5	0.105	UPSTREAM Ir47a INTRON CG42732
2R	6273629	2R_6273629_SNP [dm3] 2R_10386124_SNP [dm6]	G	C	3.166e^-5	0.105	INTRON CG42732
2R	6280850	2R_6280850_SNP [dm3] 2R_10393345_SNP [dm6]	A	C	3.166e^-5	0.105	INTRON CG42732
2L	12410780	2L_12410780_DEL [dm3] 2L_12410780_DEL [dm6]	CC	C	3.168e^-5	0.105	INTRON vir-1
3L	9406949	3L_9406949_SNP [dm3] 3L_9413849_SNP [dm6]	C	G	3.172e^-5	0.105	UTR_3_PRIME CG3967 DOWNSTREAM CG3689 & 1 other
2R	15135843	2R_15135843_SNP [dm3] 2R_19248338_SNP [dm6]	G	C	3.189e^-5	0.105	INTERGENIC	TF binding site mE1_TFBS_inv
X	14252545	X_14252545_SNP [dm3] X_14358512_SNP [dm6]	T	A	3.192e^-5	0.105	INTRON dpr8
X	4296485	X_4296485_SNP [dm3] X_4402452_SNP [dm6]	G	A	3.192e^-5	0.105	INTRON CR32773	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	13237877	2R_13237877_SNP [dm3] 2R_17350372_SNP [dm6]	G	A	3.205e^-5	0.105	INTRON mbl
2L	17060524	2L_17060524_SNP [dm3] 2L_17060524_SNP [dm6]	C	A	3.225e^-5	0.105	INTERGENIC
2R	6263433	2R_6263433_SNP [dm3] 2R_10375928_SNP [dm6]	C	T	3.304e^-5	0.108	DOWNSTREAM Ir47b INTRON CG42732
2L	19090733	2L_19090733_SNP [dm3] 2L_19090733_SNP [dm6]	G	A	3.306e^-5	0.108	INTRON Lim3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1923142	2L_1923142_SNP [dm3] 2L_1923142_SNP [dm6]	T	A	3.315e^-5	0.108	INTRON CG7337
3L	14335411	3L_14335411_SNP [dm3] 3L_14342311_SNP [dm6]	T	G	3.320e^-5	0.108	INTRON fz
3R	13621814	3R_13621814_SNP [dm3] 3R_17796092_SNP [dm6]	A	G	3.337e^-5	0.108	UTR_3_PRIME CG7713 DOWNSTREAM CG7379	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17060480	2L_17060480_SNP [dm3] 2L_17060480_SNP [dm6]	A	C	3.342e^-5	0.108	INTERGENIC
2R	13695200	2R_13695200_SNP [dm3] 2R_17807695_SNP [dm6]	A	G	3.349e^-5	0.108	INTRON grh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7913112	2R_7913112_SNP [dm3] 2R_12025607_SNP [dm6]	A	G	3.360e^-5	0.108	UPSTREAM CG8964 DOWNSTREAM Mppe INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13118632	2L_13118632_SNP [dm3] 2L_13118632_SNP [dm6]	T	G	3.368e^-5	0.108	UPSTREAM CG43050 DOWNSTREAM CR44198 INTERGENIC
2L	13118638	2L_13118638_SNP [dm3] 2L_13118638_SNP [dm6]	A	T	3.368e^-5	0.108	UPSTREAM CG43050 DOWNSTREAM CR44198 INTERGENIC
2L	17060491	2L_17060491_SNP [dm3] 2L_17060491_SNP [dm6]	C	A	3.437e^-5	0.11	INTERGENIC
2L	17060517	2L_17060517_SNP [dm3] 2L_17060517_SNP [dm6]	C	T	3.437e^-5	0.11	INTERGENIC
2L	1911420	2L_1911420_DEL [dm3] 2L_1911420_DEL [dm6]	AG	A	3.443e^-5	0.11	UPSTREAM CG7337 INTRON CG7337	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	17328758	3R_17328758_SNP [dm3] 3R_21503036_SNP [dm6]	T	G	3.474e^-5	0.111	INTRON C15	TF binding site BDTNP1_TFBS_da
2R	18019743	2R_18019743_SNP [dm3] 2R_22132238_SNP [dm6]	T	G	3.479e^-5	0.111	UPSTREAM CG34205 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	11496003	2L_11496003_INS [dm3] 2L_11496003_INS [dm6]	A	AACAAGT	3.488e^-5	0.111	DOWNSTREAM CG6488 INTERGENIC
3R	13466185	3R_13466185_SNP [dm3] 3R_17640463_SNP [dm6]	C	G	3.491e^-5	0.111	DOWNSTREAM CR45222 INTRON CG43175
3L	18819800	3L_18819800_SNP [dm3] 3L_18826700_SNP [dm6]	C	T	3.510e^-5	0.111	SYNONYMOUS_CODING Cat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20904866	X_20904866_SNP [dm3] X_21033839_SNP [dm6]	A	G	3.519e^-5	0.111	INTERGENIC	transposable element FlyBase
3R	16930381	3R_16930381_SNP [dm3] 3R_21104659_SNP [dm6]	G	T	3.536e^-5	0.112	SYNONYMOUS_CODING CG5745 DOWNSTREAM Sec15
2L	11591540	2L_11591540_SNP [dm3] 2L_11591540_SNP [dm6]	A	G	3.537e^-5	0.112	SYNONYMOUS_CODING Acp33A INTRON kek2
2L	14134351	2L_14134351_SNP [dm3] 2L_14134351_SNP [dm6]	G	T	3.543e^-5	0.112	UPSTREAM CG17341 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5279638	3L_5279638_DEL [dm3] 3L_5286538_DEL [dm6]	TG	A	3.560e^-5	0.112	INTERGENIC
X	18706581	X_18706581_SNP [dm3] X_18812548_SNP [dm6]	C	T	3.607e^-5	0.113	UPSTREAM CG42450 DOWNSTREAM CG7058 INTERGENIC	transposable element FlyBase
2L	17141835	2L_17141835_SNP [dm3] 2L_17141835_SNP [dm6]	G	A	3.608e^-5	0.113	INTRON beat-IIIa & 1 other
3R	21291588	3R_21291588_SNP [dm3] 3R_25465866_SNP [dm6]	T	G	3.615e^-5	0.113	INTRON Fur1
3R	22517687	3R_22517687_SNP [dm3] 3R_26691965_SNP [dm6]	T	G	3.618e^-5	0.113	DOWNSTREAM TwdlQ INTERGENIC
3L	9756283	3L_9756283_SNP [dm3] 3L_9763183_SNP [dm6]	G	A	3.618e^-5	0.113	UPSTREAM CG8177 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11078056	2L_11078056_SNP [dm3] 2L_11078056_SNP [dm6]	C	A	3.625e^-5	0.113	INTRON AstC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA
3R	10836683	3R_10836683_SNP [dm3] 3R_15010961_SNP [dm6]	A	C	3.639e^-5	0.113	INTERGENIC
2R	8558110	2R_8558110_SNP [dm3] 2R_12670605_SNP [dm6]	T	G	3.645e^-5	0.113	UTR_3_PRIME CG42708 UPSTREAM nemy DOWNSTREAM CG42708	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3L	1039679	3L_1039679_SNP [dm3] 3L_1039679_SNP [dm6]	T	G	3.645e^-5	0.113	INTRON bab1	TF binding site mE1_TFBS_cad
2L	8841792	2L_8841792_SNP [dm3] 2L_8841792_SNP [dm6]	T	A	3.654e^-5	0.113	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	10623799	3L_10623799_SNP [dm3] 3L_10630699_SNP [dm6]	C	T	3.657e^-5	0.113	UPSTREAM CG42536 & 2 others INTRON CG42535	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10566429	2R_10566429_SNP [dm3] 2R_14678924_SNP [dm6]	A	G	3.658e^-5	0.113	UPSTREAM CG30480 & 1 other INTRON mspo
2R	6341954	2R_6341954_SNP [dm3] 2R_10454449_SNP [dm6]	G	T	3.675e^-5	0.113	INTRON Galphao & 1 other
3L	6249019	3L_6249019_SNP [dm3] 3L_6255919_SNP [dm6]	T	A	3.687e^-5	0.113	INTRON Best2
3L	6250978	3L_6250978_SNP [dm3] 3L_6257878_SNP [dm6]	G	A	3.687e^-5	0.113	SYNONYMOUS_CODING CG10163	TF binding site mE1_TFBS_sens
2L	20493377	2L_20493377_SNP [dm3] 2L_20493377_SNP [dm6]	C	G	3.696e^-5	0.113	INTERGENIC
3L	16671770	3L_16671770_SNP [dm3] 3L_16678670_SNP [dm6]	C	T	3.703e^-5	0.113	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8384113	3R_8384113_SNP [dm3] 3R_12558391_SNP [dm6]	T	G	3.720e^-5	0.113	INTRON Octbeta2R
2L	7415859	2L_7415859_INS [dm3] 2L_7415859_INS [dm6]	C	CATATAGGAATATAATC...	3.729e^-5	0.113	INTRON chm
3L	12607498	3L_12607498_SNP [dm3] 3L_12614398_SNP [dm6]	T	C	3.730e^-5	0.113	INTRON caup	TF binding site mE1_TFBS_Stat92E
3L	12607582	3L_12607582_SNP [dm3] 3L_12614482_SNP [dm6]	T	G	3.730e^-5	0.113	INTRON caup	TF binding site mE1_TFBS_Stat92E
X	4457518	X_4457518_SNP [dm3] X_4563485_SNP [dm6]	C	T	3.775e^-5	0.114	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4457524	X_4457524_SNP [dm3] X_4563491_SNP [dm6]	T	A	3.775e^-5	0.114	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8023758	X_8023758_SNP [dm3] X_8129725_SNP [dm6]	A	C	3.782e^-5	0.114	UPSTREAM CG2116 & 1 other INTRON cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
X	8023761	X_8023761_SNP [dm3] X_8129728_SNP [dm6]	G	C	3.782e^-5	0.114	UPSTREAM CG2116 & 1 other INTRON cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
X	8023785	X_8023785_SNP [dm3] X_8129752_SNP [dm6]	A	C	3.782e^-5	0.114	UPSTREAM CG2116 & 1 other INTRON cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
X	8023788	X_8023788_SNP [dm3] X_8129755_SNP [dm6]	C	G	3.782e^-5	0.114	UPSTREAM CG2116 & 1 other INTRON cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
X	18706587	X_18706587_DEL [dm3] X_18812554_DEL [dm6]	TGTAT	T	3.784e^-5	0.114	UPSTREAM CG42450 DOWNSTREAM CG7058 INTERGENIC	transposable element FlyBase
3L	20983450	3L_20983450_SNP [dm3] 3L_20990350_SNP [dm6]	C	T	3.807e^-5	0.114	INTERGENIC
2R	8863985	2R_8863985_SNP [dm3] 2R_12976480_SNP [dm6]	C	T	3.835e^-5	0.114	INTRON Psc	TF binding site mE1_TFBS_HSA
2R	8864019	2R_8864019_INS [dm3] 2R_12976514_INS [dm6]	C	CC	3.835e^-5	0.114	INTRON Psc	TF binding site mE1_TFBS_HSA
2L	19049124	2L_19049124_SNP [dm3] 2L_19049124_SNP [dm6]	A	C	3.837e^-5	0.114	UTR_5_PRIME CG10470 DOWNSTREAM Acn & 1 other	TF binding site mE1_TFBS_cad
2L	19065587	2L_19065587_SNP [dm3] 2L_19065587_SNP [dm6]	A	T	3.837e^-5	0.114	NON_SYNONYMOUS_CODING CG10702 DOWNSTREAM CG10495 INTRON CG17343	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2243917	X_2243917_SNP [dm3] X_2349884_SNP [dm6]	C	G	3.845e^-5	0.114	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
3R	22251521	3R_22251521_SNP [dm3] 3R_26425799_SNP [dm6]	G	T	3.860e^-5	0.114	UPSTREAM CG6503 & 1 other INTRON CR31084
3R	19335184	3R_19335184_SNP [dm3] 3R_23509462_SNP [dm6]	C	T	3.862e^-5	0.114	INTERGENIC
3R	6780841	3R_6780841_DEL [dm3] 3R_10955119_DEL [dm6]	TT	T	3.863e^-5	0.114	INTERGENIC
2L	17059486	2L_17059486_SNP [dm3] 2L_17059486_SNP [dm6]	T	A	3.919e^-5	0.115	INTERGENIC
2L	743385	2L_743385_SNP [dm3] 2L_743385_SNP [dm6]	A	G	3.920e^-5	0.115	UTR_5_PRIME Eaat2
X	5404054	X_5404054_SNP [dm3] X_5510021_SNP [dm6]	A	C	3.924e^-5	0.115	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10305341	3R_10305341_INS [dm3] 3R_14479619_INS [dm6]	A	ATGTAAAATACTTTACAA...	3.952e^-5	0.115	INTRON cv-c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3R	9547425	3R_9547425_SNP [dm3] 3R_13721703_SNP [dm6]	A	T	3.960e^-5	0.115	INTRON CG34383
X	20972589	X_20972589_SNP [dm3] X_21101562_SNP [dm6]	A	T	3.960e^-5	0.115	NON_SYNONYMOUS_CODING CG15446 INTRON stg1 & 1 other	TF binding site BDTNP1_TFBS_twi
X	8073418	X_8073418_INS [dm3] X_8179385_INS [dm6]	A	AAAGCATGCCAAA...	3.970e^-5	0.115	UTR_5_PRIME sdt INTRON sdt
3R	25615696	3R_25615696_SNP [dm3] 3R_29789974_SNP [dm6]	A	G	3.970e^-5	0.115	UTR_5_PRIME kay INTRON kay	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	6252455	3L_6252455_SNP [dm3] 3L_6259355_SNP [dm6]	G	A	3.972e^-5	0.115	UTR_3_PRIME ImpL3 UPSTREAM CG10163 DOWNSTREAM ImpL3
2L	2948072	2L_2948072_SNP [dm3] 2L_2948072_SNP [dm6]	T	C	3.974e^-5	0.115	INTRON lilli
3R	24813016	3R_24813016_INS [dm3] 3R_28987294_INS [dm6]	T	TT	3.995e^-5	0.115	INTERGENIC
3R	10836834	3R_10836834_SNP [dm3] 3R_15011112_SNP [dm6]	C	A	3.997e^-5	0.115	INTERGENIC
2R	10244971	2R_10244971_SNP [dm3] 2R_14357466_SNP [dm6]	C	G	4.000e^-5	0.115	UPSTREAM CG8617 DOWNSTREAM Arc1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2R	10245119	2R_10245119_SNP [dm3] 2R_14357614_SNP [dm6]	A	G	4.000e^-5	0.115	UPSTREAM CG8617 DOWNSTREAM Arc1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2R	8613762	2R_8613762_SNP [dm3] 2R_12726257_SNP [dm6]	A	T	4.000e^-5	0.115	INTRON CG42663
3R	10836681	3R_10836681_SNP [dm3] 3R_15010959_SNP [dm6]	A	T	4.001e^-5	0.115	INTERGENIC
3R	10836720	3R_10836720_SNP [dm3] 3R_15010998_SNP [dm6]	T	G	4.001e^-5	0.115	INTERGENIC
3L	6248898	3L_6248898_SNP [dm3] 3L_6255798_SNP [dm6]	A	T	4.008e^-5	0.115	INTRON Best2
X	3867097	X_3867097_SNP [dm3] X_3973064_SNP [dm6]	G	C	4.017e^-5	0.115	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26979401	3R_26979401_SNP [dm3] 3R_31153679_SNP [dm6]	G	A	4.021e^-5	0.115	INTRON Gycbeta100B
2L	18366445	2L_18366445_SNP [dm3] 2L_18366445_SNP [dm6]	C	T	4.027e^-5	0.115	INTRON Fas3
2R	11509861	2R_11509861_SNP [dm3] 2R_15622356_SNP [dm6]	T	C	4.035e^-5	0.115	INTRON CG42524	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19246640	2L_19246640_SNP [dm3] 2L_19246640_SNP [dm6]	A	T	4.072e^-5	0.116	INTERGENIC
3R	11652036	3R_11652036_SNP [dm3] 3R_15826314_SNP [dm6]	T	C	4.075e^-5	0.116	INTRON rec & 1 other
2L	1831551	2L_1831551_SNP [dm3] 2L_1831551_SNP [dm6]	G	C	4.109e^-5	0.117	DOWNSTREAM c-cup & 1 other INTERGENIC
3R	9453084	3R_9453084_SNP [dm3] 3R_13627362_SNP [dm6]	C	A	4.122e^-5	0.117	INTERGENIC
2R	10530860	2R_10530860_SNP [dm3] 2R_14643355_SNP [dm6]	G	C	4.131e^-5	0.117	INTERGENIC
3L	6257667	3L_6257667_DEL [dm3] 3L_6264567_DEL [dm6]	CT	C	4.147e^-5	0.117	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Trl mE1_TFBS_zfh1
2R	8851063	2R_8851063_SNP [dm3] 2R_12963558_SNP [dm6]	C	G	4.189e^-5	0.118	INTERGENIC
2R	13801338	2R_13801338_SNP [dm3] 2R_17913833_SNP [dm6]	C	T	4.221e^-5	0.118	INTRON Elk
2R	13801339	2R_13801339_SNP [dm3] 2R_17913834_SNP [dm6]	A	G	4.221e^-5	0.118	INTRON Elk
2L	11208764	2L_11208764_DEL [dm3] 2L_11208764_DEL [dm6]	TAGATGGGATGCGGTGGGGC...	T	4.228e^-5	0.118	INTERGENIC
2L	11208787	2L_11208787_INS [dm3] 2L_11208787_INS [dm6]	G	GTGT	4.228e^-5	0.118	INTERGENIC
2R	6263318	2R_6263318_SNP [dm3] 2R_10375813_SNP [dm6]	C	A	4.234e^-5	0.118	DOWNSTREAM Ir47b INTRON CG42732
2R	6263338	2R_6263338_SNP [dm3] 2R_10375833_SNP [dm6]	G	A	4.234e^-5	0.118	DOWNSTREAM Ir47b INTRON CG42732
2R	6263591	2R_6263591_SNP [dm3] 2R_10376086_SNP [dm6]	G	C	4.234e^-5	0.118	DOWNSTREAM Ir47b INTRON CG42732
2R	6270946	2R_6270946_SNP [dm3] 2R_10383441_SNP [dm6]	T	A	4.234e^-5	0.118	INTRON CG42732
2L	11587004	2L_11587004_SNP [dm3] 2L_11587004_SNP [dm6]	G	C	4.244e^-5	0.118	UPSTREAM Mst33A INTRON kek2
2R	6267803	2R_6267803_SNP [dm3] 2R_10380298_SNP [dm6]	A	G	4.262e^-5	0.118	UPSTREAM Ir47a INTRON CG42732
3R	8606396	3R_8606396_INS [dm3] 3R_12780674_INS [dm6]	A	AAACA	4.269e^-5	0.118	INTRON beat-Vc
3R	9659166	3R_9659166_SNP [dm3] 3R_13833444_SNP [dm6]	C	T	4.271e^-5	0.118	DOWNSTREAM Nsf2 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	9659170	3R_9659170_SNP [dm3] 3R_13833448_SNP [dm6]	C	A	4.271e^-5	0.118	DOWNSTREAM Nsf2 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	994893	3L_994893_SNP [dm3] 3L_994893_SNP [dm6]	C	T	4.285e^-5	0.118	SYNONYMOUS_CODING CG12038	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17357914	3L_17357914_SNP [dm3] 3L_17364814_SNP [dm6]	T	A	4.286e^-5	0.118	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_D
3R	11982353	3R_11982353_SNP [dm3] 3R_16156631_SNP [dm6]	T	C	4.289e^-5	0.118	INTRON CG6006
3R	27067725	3R_27067725_SNP [dm3] 3R_31242003_SNP [dm6]	G	A	4.293e^-5	0.118	INTRON qless
3R	21921291	3R_21921291_SNP [dm3] 3R_26095569_SNP [dm6]	C	G	4.308e^-5	0.119	INTRON dys	regulatory region REDfly_CRMs
2R	17578453	2R_17578453_SNP [dm3] 2R_21690948_SNP [dm6]	C	T	4.324e^-5	0.119	NON_SYNONYMOUS_CODING CG42497 UTR_5_PRIME Tim10 UPSTREAM CG42496 & 1 other DOWNSTREAM CG10307	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13955429	3R_13955429_DEL [dm3] 3R_18129707_DEL [dm6]	TT	T	4.324e^-5	0.119	INTRON sr	TF binding site mE1_TFBS_inv
3L	6250276	3L_6250276_DEL [dm3] 3L_6257176_DEL [dm6]	TT	T	4.353e^-5	0.119	UPSTREAM Best2 DOWNSTREAM CG10163 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	9936530	3R_9936530_SNP [dm3] 3R_14110808_SNP [dm6]	T	C	4.361e^-5	0.119	SYNONYMOUS_CODING Or88a UPSTREAM CR44237 DOWNSTREAM CG14357
2L	13117110	2L_13117110_SNP [dm3] 2L_13117110_SNP [dm6]	C	T	4.363e^-5	0.119	INTERGENIC
2L	13117111	2L_13117111_SNP [dm3] 2L_13117111_SNP [dm6]	G	C	4.363e^-5	0.119	INTERGENIC
2L	1697065	2L_1697065_SNP [dm3] 2L_1697065_SNP [dm6]	A	G	4.363e^-5	0.119	UTR_3_PRIME chinmo	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	10310111	3R_10310111_SNP [dm3] 3R_14484389_SNP [dm6]	A	T	4.392e^-5	0.119	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	13259675	2L_13259675_SNP [dm3] 2L_13259675_SNP [dm6]	C	A	4.415e^-5	0.12	UTR_5_PRIME CG31730
3R	18627094	3R_18627094_SNP [dm3] 3R_22801372_SNP [dm6]	T	A	4.422e^-5	0.12	INTERGENIC
2L	8167762	2L_8167762_DEL [dm3] 2L_8167762_DEL [dm6]	AACGCGACAATTTTCTGGGC...	A	4.427e^-5	0.12	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21973149	3R_21973149_INS [dm3] 3R_26147427_INS [dm6]	A	AA	4.429e^-5	0.12	INTERGENIC
3R	24534116	3R_24534116_SNP [dm3] 3R_28708394_SNP [dm6]	T	C	4.444e^-5	0.12	INTRON htt	TF binding site mE1_TFBS_chinmo
3R	15810588	3R_15810588_SNP [dm3] 3R_19984866_SNP [dm6]	T	C	4.473e^-5	0.121	INTRON Hs6st
2L	17059816	2L_17059816_SNP [dm3] 2L_17059816_SNP [dm6]	A	G	4.486e^-5	0.121	INTERGENIC
3R	18626921	3R_18626921_SNP [dm3] 3R_22801199_SNP [dm6]	G	A	4.494e^-5	0.121	INTERGENIC
2R	7939222	2R_7939222_DEL [dm3] 2R_12051717_DEL [dm6]	AA	A	4.495e^-5	0.121	UTR_5_PRIME CG30039
3R	5294609	3R_5294609_SNP [dm3] 3R_9468887_SNP [dm6]	T	C	4.508e^-5	0.121	SYNONYMOUS_CODING CG16779	TF binding site mE1_TFBS_chinmo
2R	7384683	2R_7384683_SNP [dm3] 2R_11497178_SNP [dm6]	C	T	4.529e^-5	0.121	INTRON inv
2R	12826805	2R_12826805_DEL [dm3] 2R_16939300_DEL [dm6]	CTGAC	C	4.535e^-5	0.121	UPSTREAM Pkc53E DOWNSTREAM CG43789 INTRON Pkc53E
2L	4622898	2L_4622898_SNP [dm3] 2L_4622898_SNP [dm6]	T	C	4.559e^-5	0.122	INTERGENIC
2L	7415861	2L_7415861_SNP [dm3] 2L_7415861_SNP [dm6]	C	T	4.573e^-5	0.122	INTRON chm
2L	8273272	2L_8273272_SNP [dm3] 2L_8273272_SNP [dm6]	C	A	4.582e^-5	0.122	UTR_5_PRIME Btk29A INTRON Btk29A
2R	6263462	2R_6263462_SNP [dm3] 2R_10375957_SNP [dm6]	C	A	4.599e^-5	0.122	DOWNSTREAM Ir47b INTRON CG42732
3R	13495494	3R_13495494_SNP [dm3] 3R_17669772_SNP [dm6]	A	C	4.599e^-5	0.122	UTR_3_PRIME CG14322 DOWNSTREAM CG14322 INTRON CG7523	TF binding site mE1_TFBS_HSA
3L	7284343	3L_7284343_INS [dm3] 3L_7291243_INS [dm6]	C	CAA	4.602e^-5	0.122	INTRON unc-13-4A
X	12456218	X_12456218_DEL [dm3] X_12562185_DEL [dm6]	TCCCGTGTAAGTGTGCCTAA...	T	4.606e^-5	0.122	INTRON CG43921
X	12456266	X_12456266_DEL [dm3] X_12562233_DEL [dm6]	GGCAAGTTTAAGAAATTCAC...	G	4.606e^-5	0.122	INTRON CG43921
3R	10836713	3R_10836713_SNP [dm3] 3R_15010991_SNP [dm6]	T	A	4.629e^-5	0.122	INTERGENIC
2L	7115024	2L_7115024_SNP [dm3] 2L_7115024_SNP [dm6]	C	T	4.669e^-5	0.123	INTRON Pvf3
X	4457494	X_4457494_INS [dm3] X_4563461_INS [dm6]	A	AAATGCC	4.701e^-5	0.123	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4457497	X_4457497_INS [dm3] X_4563464_INS [dm6]	T	TGGTG	4.701e^-5	0.123	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4457594	X_4457594_DEL [dm3] X_4563561_DEL [dm6]	ACCATGTAAGTCAACCCA...	A	4.701e^-5	0.123	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10885782	3L_10885782_SNP [dm3] 3L_10892682_SNP [dm6]	A	C	4.703e^-5	0.123	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
3R	9719413	3R_9719413_MNP [dm3] 3R_13893691_MNP [dm6]	GAGT	CCCA	4.724e^-5	0.123	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7900679	2R_7900679_SNP [dm3] 2R_12013174_SNP [dm6]	T	G	4.736e^-5	0.123	INTRON otk	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	7900141	2R_7900141_SNP [dm3] 2R_12012636_SNP [dm6]	A	G	4.759e^-5	0.123	INTRON otk
2R	7900641	2R_7900641_SNP [dm3] 2R_12013136_SNP [dm6]	T	G	4.759e^-5	0.123	INTRON otk	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	7901276	2R_7901276_SNP [dm3] 2R_12013771_SNP [dm6]	G	A	4.759e^-5	0.123	SYNONYMOUS_CODING otk
2R	7904892	2R_7904892_SNP [dm3] 2R_12017387_SNP [dm6]	C	A	4.759e^-5	0.123	INTRON otk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	7909870	2R_7909870_SNP [dm3] 2R_12022365_SNP [dm6]	A	G	4.759e^-5	0.123	DOWNSTREAM CG8964 INTERGENIC
3R	14361245	3R_14361245_SNP [dm3] 3R_18535523_SNP [dm6]	A	T	4.762e^-5	0.123	INTRON fru
3L	5095198	3L_5095198_SNP [dm3] 3L_5095198_SNP [dm6]	C	A	4.764e^-5	0.123	INTERGENIC
3L	5095206	3L_5095206_SNP [dm3] 3L_5095206_SNP [dm6]	C	G	4.764e^-5	0.123	INTERGENIC
2L	5626573	2L_5626573_SNP [dm3] 2L_5626573_SNP [dm6]	A	T	4.772e^-5	0.123	UTR_3_PRIME CG31646
2L	4622875	2L_4622875_SNP [dm3] 2L_4622875_SNP [dm6]	C	T	4.787e^-5	0.123	INTERGENIC
3L	9971257	3L_9971257_SNP [dm3] 3L_9978157_SNP [dm6]	A	G	4.794e^-5	0.123	INTRON dpr6
2R	6272393	2R_6272393_SNP [dm3] 2R_10384888_SNP [dm6]	T	C	4.810e^-5	0.123	INTRON CG42732
2R	6272394	2R_6272394_SNP [dm3] 2R_10384889_SNP [dm6]	A	T	4.810e^-5	0.123	INTRON CG42732
2R	6272413	2R_6272413_SNP [dm3] 2R_10384908_SNP [dm6]	A	G	4.810e^-5	0.123	INTRON CG42732
2L	1922930	2L_1922930_SNP [dm3] 2L_1922930_SNP [dm6]	T	C	4.823e^-5	0.123	INTRON CG7337
2R	18942827	2R_18942827_SNP [dm3] 2R_23055304_SNP [dm6]	C	A	4.850e^-5	0.124	UPSTREAM CG44252 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9751381	3L_9751381_SNP [dm3] 3L_9758281_SNP [dm6]	A	G	4.851e^-5	0.124	INTRON CG42268
X	15895834	X_15895834_SNP [dm3] X_16001801_SNP [dm6]	G	A	4.851e^-5	0.124	INTRON vap	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11509870	2R_11509870_SNP [dm3] 2R_15622365_SNP [dm6]	G	A	4.871e^-5	0.124	INTRON CG42524	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5251464	3L_5251464_SNP [dm3] 3L_5258364_SNP [dm6]	T	A	4.903e^-5	0.125	INTRON shep
2L	18403339	2L_18403339_DEL [dm3] 2L_18403339_DEL [dm6]	CAAC	C	4.907e^-5	0.125	UPSTREAM CR44487 INTERGENIC
2R	8616379	2R_8616379_SNP [dm3] 2R_12728874_SNP [dm6]	A	T	4.920e^-5	0.125	INTRON CG42663
2L	13594738	2L_13594738_SNP [dm3] 2L_13594738_SNP [dm6]	G	T	4.928e^-5	0.125	DOWNSTREAM CG9254 INTRON kuz
3L	12378483	3L_12378483_SNP [dm3] 3L_12385383_SNP [dm6]	A	T	4.939e^-5	0.125	INTRON Ncc69
3R	25758532	3R_25758532_SNP [dm3] 3R_29932810_SNP [dm6]	T	A	4.992e^-5	0.126	NON_SYNONYMOUS_CODING Cog7 UPSTREAM CG42557 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5626672	2L_5626672_SNP [dm3] 2L_5626672_SNP [dm6]	G	A	5.001e^-5	0.126	UTR_3_PRIME CG31646
2L	14789416	2L_14789416_SNP [dm3] 2L_14789416_SNP [dm6]	G	A	5.008e^-5	0.126	INTERGENIC
X	17158953	X_17158953_SNP [dm3] X_17264920_SNP [dm6]	T	G	5.019e^-5	0.126	UPSTREAM f INTRON f
3L	9756865	3L_9756865_SNP [dm3] 3L_9763765_SNP [dm6]	C	A	5.032e^-5	0.126	UTR_5_PRIME CG8177 INTRON CG8177	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	1856645	3R_1856645_SNP [dm3] 3R_6030923_SNP [dm6]	A	T	5.059e^-5	0.126	INTERGENIC
3R	1925184	3R_1925184_SNP [dm3] 3R_6099462_SNP [dm6]	C	T	5.059e^-5	0.126	INTRON Gasp	TF binding site BDTNP1_TFBS_prd
2L	20501337	2L_20501337_SNP [dm3] 2L_20501337_SNP [dm6]	C	G	5.060e^-5	0.126	INTERGENIC
3L	18250884	3L_18250884_SNP [dm3] 3L_18257784_SNP [dm6]	A	T	5.063e^-5	0.126	INTERGENIC
2R	6267206	2R_6267206_SNP [dm3] 2R_10379701_SNP [dm6]	A	C	5.067e^-5	0.126	NON_SYNONYMOUS_CODING Ir47a INTRON CG42732
2L	11290548	2L_11290548_SNP [dm3] 2L_11290548_SNP [dm6]	T	A	5.069e^-5	0.126	DOWNSTREAM CR43409 INTERGENIC
2L	11290745	2L_11290745_SNP [dm3] 2L_11290745_SNP [dm6]	A	G	5.069e^-5	0.126	EXON CR43409
2L	20488836	2L_20488836_SNP [dm3] 2L_20488836_SNP [dm6]	G	T	5.080e^-5	0.126	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9741719	2R_9741719_SNP [dm3] 2R_13854214_SNP [dm6]	C	A	5.098e^-5	0.126	UTR_5_PRIME CG6543 UPSTREAM CR44367 DOWNSTREAM CG6553	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	10305324	3R_10305324_SNP [dm3] 3R_14479602_SNP [dm6]	C	T	5.106e^-5	0.126	INTRON cv-c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	15767597	2L_15767597_SNP [dm3] 2L_15767597_SNP [dm6]	G	A	5.115e^-5	0.126	NON_SYNONYMOUS_CODING wek	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni mE1_TFBS_HSA mE1_TFBS_sens
3L	17924935	3L_17924935_SNP [dm3] 3L_17931835_SNP [dm6]	A	G	5.118e^-5	0.126	INTERGENIC
2L	11494775	2L_11494775_INS [dm3] 2L_11494775_INS [dm6]	T	TATCTATAAT	5.122e^-5	0.126	INTERGENIC
3R	9671863	3R_9671863_SNP [dm3] 3R_13846141_SNP [dm6]	C	T	5.124e^-5	0.126	INTERGENIC	TF binding site mE1_TFBS_cad
3L	1139879	3L_1139879_SNP [dm3] 3L_1139879_SNP [dm6]	C	G	5.124e^-5	0.126	DOWNSTREAM bab2 INTERGENIC	TF binding site mE1_TFBS_HSA
X	13143947	X_13143947_SNP [dm3] X_13249914_SNP [dm6]	T	A	5.163e^-5	0.126	INTRON mew	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_twi
2L	147254	2L_147254_SNP [dm3] 2L_147254_SNP [dm6]	C	T	5.172e^-5	0.126	INTRON CG11455 & 1 other
2L	224964	2L_224964_SNP [dm3] 2L_224964_SNP [dm6]	T	G	5.172e^-5	0.126	DOWNSTREAM CR44222 INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	252466	2L_252466_SNP [dm3] 2L_252466_SNP [dm6]	G	T	5.172e^-5	0.126	UPSTREAM Rpp30 DOWNSTREAM CG3645 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	9406951	3L_9406951_SNP [dm3] 3L_9413851_SNP [dm6]	A	C	5.189e^-5	0.126	UTR_3_PRIME CG3967 DOWNSTREAM CG3689 & 1 other
3L	6254424	3L_6254424_SNP [dm3] 3L_6261324_SNP [dm6]	T	G	5.207e^-5	0.126	UPSTREAM ImpL3 INTRON ImpL3
3L	5513211	3L_5513211_DEL [dm3] 3L_5520111_DEL [dm6]	TT	T	5.229e^-5	0.126	INTRON Lkr
2R	8851070	2R_8851070_SNP [dm3] 2R_12963565_SNP [dm6]	T	C	5.259e^-5	0.126	INTERGENIC
2R	3747399	2R_3747399_SNP [dm3] 2R_7859894_SNP [dm6]	T	A	5.261e^-5	0.126	INTRON Dgk
3L	10029593	3L_10029593_SNP [dm3] 3L_10036493_SNP [dm6]	C	T	5.267e^-5	0.126	INTRON dpr6
3R	19336431	3R_19336431_SNP [dm3] 3R_23510709_SNP [dm6]	C	A	5.270e^-5	0.126	INTERGENIC
3L	17357917	3L_17357917_SNP [dm3] 3L_17364817_SNP [dm6]	C	A	5.271e^-5	0.126	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_D
3R	14427087	3R_14427087_SNP [dm3] 3R_18601365_SNP [dm6]	G	A	5.300e^-5	0.126	INTRON qin & 1 other
2R	6272712	2R_6272712_SNP [dm3] 2R_10385207_SNP [dm6]	A	T	5.302e^-5	0.126	INTRON CG42732
X	4457501	X_4457501_SNP [dm3] X_4563468_SNP [dm6]	T	C	5.302e^-5	0.126	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	999686	3L_999686_SNP [dm3] 3L_999686_SNP [dm6]	A	C	5.318e^-5	0.126	SPLICE_SITE_REGION trio INTRON trio
3L	7741430	3L_7741430_SNP [dm3] 3L_7748330_SNP [dm6]	A	C	5.324e^-5	0.126	SYNONYMOUS_CODING CG13685 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7741361	3L_7741361_SNP [dm3] 3L_7748261_SNP [dm6]	C	A	5.325e^-5	0.126	SYNONYMOUS_CODING CG13685 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6268331	2R_6268331_SNP [dm3] 2R_10380826_SNP [dm6]	A	G	5.337e^-5	0.126	UPSTREAM Ir47a INTRON CG42732
2R	6270245	2R_6270245_SNP [dm3] 2R_10382740_SNP [dm6]	T	A	5.337e^-5	0.126	INTRON CG42732
2R	6270813	2R_6270813_DEL [dm3] 2R_10383308_DEL [dm6]	AGTTGATGA	A	5.337e^-5	0.126	INTRON CG42732
2R	6270823	2R_6270823_SNP [dm3] 2R_10383318_SNP [dm6]	C	A	5.337e^-5	0.126	INTRON CG42732
2R	6270825	2R_6270825_SNP [dm3] 2R_10383320_SNP [dm6]	A	T	5.337e^-5	0.126	INTRON CG42732
2R	6270827	2R_6270827_SNP [dm3] 2R_10383322_SNP [dm6]	T	A	5.337e^-5	0.126	INTRON CG42732
2R	6272144	2R_6272144_SNP [dm3] 2R_10384639_SNP [dm6]	A	C	5.337e^-5	0.126	INTRON CG42732
2R	6272156	2R_6272156_SNP [dm3] 2R_10384651_SNP [dm6]	C	T	5.337e^-5	0.126	INTRON CG42732
2R	6272722	2R_6272722_SNP [dm3] 2R_10385217_SNP [dm6]	A	T	5.337e^-5	0.126	INTRON CG42732
2R	6273079	2R_6273079_SNP [dm3] 2R_10385574_SNP [dm6]	G	A	5.337e^-5	0.126	INTRON CG42732
2R	6273631	2R_6273631_SNP [dm3] 2R_10386126_SNP [dm6]	C	T	5.337e^-5	0.126	INTRON CG42732
2R	6274199	2R_6274199_SNP [dm3] 2R_10386694_SNP [dm6]	C	A	5.337e^-5	0.126	INTRON CG42732
2R	6274203	2R_6274203_SNP [dm3] 2R_10386698_SNP [dm6]	C	G	5.337e^-5	0.126	INTRON CG42732
2R	6274241	2R_6274241_SNP [dm3] 2R_10386736_SNP [dm6]	G	A	5.337e^-5	0.126	INTRON CG42732
2R	6280792	2R_6280792_SNP [dm3] 2R_10393287_SNP [dm6]	C	G	5.337e^-5	0.126	INTRON CG42732
X	8073425	X_8073425_SNP [dm3] X_8179392_SNP [dm6]	T	A	5.351e^-5	0.126	UTR_5_PRIME sdt INTRON sdt
3R	22000556	3R_22000556_SNP [dm3] 3R_26174834_SNP [dm6]	C	T	5.362e^-5	0.126	INTRON CG31323
3L	9980264	3L_9980264_DEL [dm3] 3L_9987164_DEL [dm6]	AAATTATGTTCTGTCCCCGA...	A	5.362e^-5	0.126	INTRON dpr6
3R	19396962	3R_19396962_SNP [dm3] 3R_23571240_SNP [dm6]	A	T	5.389e^-5	0.126	INTRON beat-IV
3L	7148340	3L_7148340_SNP [dm3] 3L_7155240_SNP [dm6]	C	G	5.398e^-5	0.126	INTRON corn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	2433560	2L_2433560_SNP [dm3] 2L_2433560_SNP [dm6]	C	T	5.410e^-5	0.126	INTRON dpp
3R	11992707	3R_11992707_DEL [dm3] 3R_16166985_DEL [dm6]	AACA	A	5.412e^-5	0.126	INTRON CG6006
2R	6278447	2R_6278447_SNP [dm3] 2R_10390942_SNP [dm6]	C	G	5.414e^-5	0.126	INTRON CG42732
3R	9547488	3R_9547488_SNP [dm3] 3R_13721766_SNP [dm6]	G	A	5.430e^-5	0.127	INTRON CG34383
2R	6374455	2R_6374455_SNP [dm3] 2R_10486950_SNP [dm6]	G	A	5.469e^-5	0.127	DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	3789574	2L_3789574_SNP [dm3] 2L_3789574_SNP [dm6]	C	A	5.486e^-5	0.128	UPSTREAM CG3921 INTRON CG3921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9742605	2R_9742605_SNP [dm3] 2R_13855100_SNP [dm6]	A	G	5.560e^-5	0.129	NON_SYNONYMOUS_CODING CG6553 UPSTREAM CG6543 EXON CR44367
2L	13109516	2L_13109516_SNP [dm3] 2L_13109516_SNP [dm6]	C	T	5.589e^-5	0.129	DOWNSTREAM CG5142 INTERGENIC
2R	3920166	2R_3920166_INS [dm3] 2R_8032661_INS [dm6]	C	CCCTC	5.598e^-5	0.129	INTRON Optix	TF binding site mE1_TFBS_sens
2R	9825030	2R_9825030_SNP [dm3] 2R_13937525_SNP [dm6]	G	A	5.606e^-5	0.129	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
2L	3947752	2L_3947752_SNP [dm3] 2L_3947752_SNP [dm6]	T	A	5.607e^-5	0.129	INTRON fred	TF binding site mE1_TFBS_inv
X	15895887	X_15895887_SNP [dm3] X_16001854_SNP [dm6]	T	G	5.610e^-5	0.129	INTRON vap	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17158904	X_17158904_SNP [dm3] X_17264871_SNP [dm6]	A	C	5.649e^-5	0.13	UPSTREAM f INTRON f
X	17158918	X_17158918_SNP [dm3] X_17264885_SNP [dm6]	T	A	5.649e^-5	0.13	UPSTREAM f INTRON f
3R	13989810	3R_13989810_DEL [dm3] 3R_18164088_DEL [dm6]	GT	G	5.687e^-5	0.131	UPSTREAM Cbp20 INTRON CG7218	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15620383	2L_15620383_SNP [dm3] 2L_15620383_SNP [dm6]	T	G	5.690e^-5	0.131	INTERGENIC
2L	7671809	2L_7671809_SNP [dm3] 2L_7671809_SNP [dm6]	T	G	5.699e^-5	0.131	INTRON Slob & 1 other
2L	11730536	2L_11730536_DEL [dm3] 2L_11730536_DEL [dm6]	CCTTACACATC...	C	5.713e^-5	0.131	INTERGENIC
2L	9686897	2L_9686897_SNP [dm3] 2L_9686897_SNP [dm6]	A	T	5.741e^-5	0.131	INTRON Pka-C1	TF binding site mE1_TFBS_HSA
3R	16107097	3R_16107097_SNP [dm3] 3R_20281375_SNP [dm6]	A	C	5.754e^-5	0.132	INTRON cic
3R	13278384	3R_13278384_SNP [dm3] 3R_17452662_SNP [dm6]	A	C	5.777e^-5	0.132	INTERGENIC
2R	11532996	2R_11532996_SNP [dm3] 2R_15645491_SNP [dm6]	T	G	5.778e^-5	0.132	INTRON CG42524	TF binding site BDTNP1_TFBS_hb
2R	1067068	2R_1067068_SNP [dm3] 2R_5179563_SNP [dm6]	A	T	5.841e^-5	0.133	INTRON Nipped-A
3R	13472795	3R_13472795_SNP [dm3] 3R_17647073_SNP [dm6]	A	G	5.846e^-5	0.133	UPSTREAM CG14322 & 1 other DOWNSTREAM tRNA:CR31579 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	17059465	2L_17059465_SNP [dm3] 2L_17059465_SNP [dm6]	C	T	5.852e^-5	0.133	INTERGENIC
2L	8071767	2L_8071767_SNP [dm3] 2L_8071767_SNP [dm6]	T	A	5.855e^-5	0.133	UPSTREAM poe DOWNSTREAM MED20 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	26494780	3R_26494780_SNP [dm3] 3R_30669058_SNP [dm6]	A	C	5.856e^-5	0.133	INTERGENIC
X	20900204	X_20900204_SNP [dm3] X_21029177_SNP [dm6]	T	C	5.862e^-5	0.133	UTR_3_PRIME CG1529 UPSTREAM CG1532 DOWNSTREAM CG1529
3L	1039635	3L_1039635_SNP [dm3] 3L_1039635_SNP [dm6]	T	A	5.889e^-5	0.133	INTRON bab1
X	6165508	X_6165508_SNP [dm3] X_6271475_SNP [dm6]	A	C	5.891e^-5	0.133	SYNONYMOUS_CODING Spt6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7920033	2R_7920033_SNP [dm3] 2R_12032528_SNP [dm6]	T	C	5.899e^-5	0.133	SPLICE_SITE_REGION pds5 INTRON pds5
X	20907364	X_20907364_SNP [dm3] X_21036337_SNP [dm6]	A	C	5.918e^-5	0.133	INTRON Ntf-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3978390	3L_3978390_SNP [dm3] 3L_3978390_SNP [dm6]	C	T	5.943e^-5	0.134	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	5490459	3L_5490459_SNP [dm3] 3L_5497359_SNP [dm6]	C	T	5.957e^-5	0.134	DOWNSTREAM blanks INTERGENIC
X	4296422	X_4296422_SNP [dm3] X_4402389_SNP [dm6]	A	G	5.985e^-5	0.134	INTRON CR32773	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	14166943	3R_14166943_SNP [dm3] 3R_18341221_SNP [dm6]	G	C	5.997e^-5	0.134	INTRON CG15803
2L	14776914	2L_14776914_SNP [dm3] 2L_14776914_SNP [dm6]	T	A	6.011e^-5	0.135	INTERGENIC
3L	8018972	3L_8018972_SNP [dm3] 3L_8025872_SNP [dm6]	T	A	6.068e^-5	0.136	INTRON nmo
3R	26494772	3R_26494772_INS [dm3] 3R_30669050_INS [dm6]	A	AAA	6.071e^-5	0.136	INTERGENIC
2L	11290655	2L_11290655_SNP [dm3] 2L_11290655_SNP [dm6]	A	G	6.102e^-5	0.136	EXON CR43409
3R	13761964	3R_13761964_SNP [dm3] 3R_17936242_SNP [dm6]	G	A	6.108e^-5	0.136	INTRON cpo
3R	5322804	3R_5322804_SNP [dm3] 3R_9497082_SNP [dm6]	A	T	6.117e^-5	0.136	DOWNSTREAM RhoL & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
X	14252543	X_14252543_SNP [dm3] X_14358510_SNP [dm6]	G	A	6.150e^-5	0.137	INTRON dpr8
X	12160754	X_12160754_SNP [dm3] X_12266721_SNP [dm6]	A	C	6.162e^-5	0.137	INTRON Ten-a	TF binding site mE1_TFBS_inv
2L	14207550	2L_14207550_SNP [dm3] 2L_14207550_SNP [dm6]	C	A	6.178e^-5	0.137	INTRON Dyrk2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16159481	3R_16159481_SNP [dm3] 3R_20333759_SNP [dm6]	C	T	6.182e^-5	0.137	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	19961483	2L_19961483_SNP [dm3] 2L_19961483_SNP [dm6]	G	T	6.192e^-5	0.137	NON_SYNONYMOUS_CODING CG42866 UPSTREAM CG34051 DOWNSTREAM CG13965
3L	9848521	3L_9848521_INS [dm3] 3L_9855421_INS [dm6]	T	TT	6.203e^-5	0.137	UPSTREAM RasGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	3748967	3L_3748967_SNP [dm3] 3L_3748967_SNP [dm6]	A	C	6.211e^-5	0.137	INTRON CG32264
3R	19231315	3R_19231315_SNP [dm3] 3R_23405593_SNP [dm6]	T	A	6.245e^-5	0.137	NON_SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
3L	9791318	3L_9791318_SNP [dm3] 3L_9798218_SNP [dm6]	G	A	6.254e^-5	0.137	UPSTREAM Ilp1 & 2 others INTERGENIC
3R	7892378	3R_7892378_SNP [dm3] 3R_12066656_SNP [dm6]	C	G	6.266e^-5	0.137	INTERGENIC
2L	2334032	2L_2334032_SNP [dm3] 2L_2334032_SNP [dm6]	T	C	6.271e^-5	0.137	INTRON CG9967 & 1 other
2L	795671	2L_795671_SNP [dm3] 2L_795671_SNP [dm6]	G	C	6.280e^-5	0.137	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	6270833	2R_6270833_DEL [dm3] 2R_10383328_DEL [dm6]	AGTATACC	A	6.285e^-5	0.137	INTRON CG42732
2R	6273083	2R_6273083_SNP [dm3] 2R_10385578_SNP [dm6]	G	A	6.285e^-5	0.137	INTRON CG42732
3R	18470518	3R_18470518_SNP [dm3] 3R_22644796_SNP [dm6]	C	T	6.294e^-5	0.137	INTRON CG45058
3L	2490389	3L_2490389_SNP [dm3] 3L_2490389_SNP [dm6]	G	C	6.294e^-5	0.137	UTR_5_PRIME CG1146 UPSTREAM CG1146 INTRON CG45186 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9724286	2L_9724286_SNP [dm3] 2L_9724286_SNP [dm6]	G	C	6.330e^-5	0.138	INTRON Nckx30C
3R	14243193	3R_14243193_SNP [dm3] 3R_18417471_SNP [dm6]	C	A	6.333e^-5	0.138	INTRON fru
3R	8584795	3R_8584795_SNP [dm3] 3R_12759073_SNP [dm6]	A	T	6.345e^-5	0.138	INTRON beat-Vc
2R	4205190	2R_4205190_SNP [dm3] 2R_8317685_SNP [dm6]	A	G	6.359e^-5	0.138	INTERGENIC
2L	14313711	2L_14313711_SNP [dm3] 2L_14313711_SNP [dm6]	G	T	6.374e^-5	0.138	INTRON wb
2L	778566	2L_778566_SNP [dm3] 2L_778566_SNP [dm6]	A	T	6.389e^-5	0.139	UPSTREAM CG13947 INTERGENIC
X	12542944	X_12542944_SNP [dm3] X_12648911_SNP [dm6]	A	G	6.422e^-5	0.139	SYNONYMOUS_CODING Tomosyn INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl
2L	11602181	2L_11602181_SNP [dm3] 2L_11602181_SNP [dm6]	C	T	6.428e^-5	0.139	INTRON kek2
2L	14762257	2L_14762257_SNP [dm3] 2L_14762257_SNP [dm6]	A	G	6.447e^-5	0.139	UPSTREAM CSN1a DOWNSTREAM CG4691 EXON CR44858
X	4457499	X_4457499_INS [dm3] X_4563466_INS [dm6]	A	AAGT	6.453e^-5	0.139	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7831095	2L_7831095_SNP [dm3] 2L_7831095_SNP [dm6]	G	T	6.497e^-5	0.139	INTRON mts	TF binding site mE1_TFBS_cad
X	19248172	X_19248172_SNP [dm3] X_19354139_SNP [dm6]	C	T	6.506e^-5	0.139	INTRON kek5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr
X	19248278	X_19248278_SNP [dm3] X_19354245_SNP [dm6]	G	A	6.506e^-5	0.139	INTRON kek5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	19248280	X_19248280_SNP [dm3] X_19354247_SNP [dm6]	T	C	6.506e^-5	0.139	INTRON kek5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	19248326	X_19248326_SNP [dm3] X_19354293_SNP [dm6]	G	A	6.506e^-5	0.139	INTRON kek5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr
X	4457491	X_4457491_INS [dm3] X_4563458_INS [dm6]	T	TGGGCGGTT	6.522e^-5	0.139	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4457558	X_4457558_SNP [dm3] X_4563525_SNP [dm6]	T	C	6.522e^-5	0.139	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6270829	2R_6270829_SNP [dm3] 2R_10383324_SNP [dm6]	G	A	6.528e^-5	0.139	INTRON CG42732
2R	6274253	2R_6274253_SNP [dm3] 2R_10386748_SNP [dm6]	T	G	6.528e^-5	0.139	INTRON CG42732
2L	146987	2L_146987_SNP [dm3] 2L_146987_SNP [dm6]	G	A	6.544e^-5	0.139	INTRON CG11455 & 1 other
2L	146997	2L_146997_SNP [dm3] 2L_146997_SNP [dm6]	A	T	6.544e^-5	0.139	INTRON CG11455 & 1 other
3R	18627183	3R_18627183_SNP [dm3] 3R_22801461_SNP [dm6]	G	C	6.545e^-5	0.139	INTERGENIC
3L	18148416	3L_18148416_SNP [dm3] 3L_18155316_SNP [dm6]	G	A	6.545e^-5	0.139	SYNONYMOUS_CODING CG13699
2L	2022099	2L_2022099_SNP [dm3] 2L_2022099_SNP [dm6]	T	G	6.549e^-5	0.139	INTRON CG4238
3R	21962343	3R_21962343_SNP [dm3] 3R_26136621_SNP [dm6]	C	T	6.562e^-5	0.139	NON_SYNONYMOUS_CODING CG6142	TF binding site mE1_TFBS_inv
2L	18766042	2L_18766042_SNP [dm3] 2L_18766042_SNP [dm6]	G	T	6.572e^-5	0.139	INTRON ham	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	4713655	3R_4713655_SNP [dm3] 3R_8887933_SNP [dm6]	A	C	6.573e^-5	0.139	INTRON pyd
2R	6272274	2R_6272274_SNP [dm3] 2R_10384769_SNP [dm6]	A	T	6.597e^-5	0.139	INTRON CG42732
2L	7363160	2L_7363160_SNP [dm3] 2L_7363160_SNP [dm6]	A	C	6.626e^-5	0.14	UPSTREAM Wnt10 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	6273073	2R_6273073_SNP [dm3] 2R_10385568_SNP [dm6]	G	A	6.641e^-5	0.14	INTRON CG42732
3R	1823714	3R_1823714_SNP [dm3] 3R_5997992_SNP [dm6]	G	T	6.642e^-5	0.14	INTERGENIC
3R	11714145	3R_11714145_SNP [dm3] 3R_15888423_SNP [dm6]	T	G	6.684e^-5	0.141	DOWNSTREAM CG14877 INTERGENIC
X	9489467	X_9489467_SNP [dm3] X_9595434_SNP [dm6]	T	C	6.739e^-5	0.141	EXON CR45543
2L	7831327	2L_7831327_SNP [dm3] 2L_7831327_SNP [dm6]	G	A	6.742e^-5	0.141	INTRON mts
3L	9863879	3L_9863879_SNP [dm3] 3L_9870779_SNP [dm6]	G	C	6.744e^-5	0.141	DOWNSTREAM CG8108 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	13989706	3R_13989706_SNP [dm3] 3R_18163984_SNP [dm6]	G	T	6.758e^-5	0.141	UPSTREAM Cbp20 INTRON CG7218	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	13989799	3R_13989799_SNP [dm3] 3R_18164077_SNP [dm6]	T	A	6.758e^-5	0.141	UPSTREAM Cbp20 INTRON CG7218	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	13499223	3R_13499223_SNP [dm3] 3R_17673501_SNP [dm6]	T	A	6.758e^-5	0.141	DOWNSTREAM alt INTRON ald
3R	13473660	3R_13473660_SNP [dm3] 3R_17647938_SNP [dm6]	C	A	6.760e^-5	0.141	UTR_5_PRIME CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	12220038	2R_12220038_SNP [dm3] 2R_16332533_SNP [dm6]	G	A	6.770e^-5	0.141	INTRON Vha44
3L	12361019	3L_12361019_INS [dm3] 3L_12367919_INS [dm6]	C	CTAATTTA	6.795e^-5	0.142	DOWNSTREAM Ncc69 INTERGENIC
2L	13982739	2L_13982739_SNP [dm3] 2L_13982739_SNP [dm6]	G	T	6.819e^-5	0.142	UTR_3_PRIME NimC2 DOWNSTREAM rk	TF binding site mE1_TFBS_cad
2L	5236246	2L_5236246_DEL [dm3] 2L_5236246_DEL [dm6]	CC	C	6.826e^-5	0.142	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	16158848	3R_16158848_SNP [dm3] 3R_20333126_SNP [dm6]	G	C	6.837e^-5	0.142	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	16159367	3R_16159367_SNP [dm3] 3R_20333645_SNP [dm6]	A	C	6.837e^-5	0.142	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	16731463	3L_16731463_INS [dm3] 3L_16738363_INS [dm6]	T	TC	6.843e^-5	0.142	INTRON CG9701	TF binding site mE1_TFBS_sens
3R	12115290	3R_12115290_SNP [dm3] 3R_16289568_SNP [dm6]	A	C	6.847e^-5	0.142	INTRON gish	TF binding site mE1_TFBS_inv
2L	1922975	2L_1922975_SNP [dm3] 2L_1922975_SNP [dm6]	G	T	6.858e^-5	0.142	INTRON CG7337
X	21283988	X_21283988_SNP [dm3] X_21412961_SNP [dm6]	C	G	6.876e^-5	0.142	INTERGENIC
2R	8311604	2R_8311604_SNP [dm3] 2R_12424099_SNP [dm6]	C	T	6.892e^-5	0.142	SYNONYMOUS_CODING CG8520	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	19394251	3R_19394251_SNP [dm3] 3R_23568529_SNP [dm6]	A	T	6.892e^-5	0.142	INTRON beat-IV
3R	13718347	3R_13718347_SNP [dm3] 3R_17892625_SNP [dm6]	A	C	6.940e^-5	0.143	SYNONYMOUS_CODING Rim INTRON Rim
2L	2937425	2L_2937425_DEL [dm3] 2L_2937425_DEL [dm6]	TA	T	6.971e^-5	0.143	INTRON lilli	TF binding site BDTNP1_TFBS_dl
3R	26467123	3R_26467123_SNP [dm3] 3R_30641401_SNP [dm6]	C	T	6.989e^-5	0.143	INTERGENIC
2L	4796880	2L_4796880_SNP [dm3] 2L_4796880_SNP [dm6]	G	A	6.992e^-5	0.143	UTR_3_PRIME Clect27 DOWNSTREAM CG3294
X	1964968	X_1964968_SNP [dm3] X_2070935_SNP [dm6]	T	G	7.007e^-5	0.144	UPSTREAM CG4199 & 1 other INTRON CG4199	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11498080	2R_11498080_SNP [dm3] 2R_15610575_SNP [dm6]	A	C	7.027e^-5	0.144	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15026331	2R_15026331_SNP [dm3] 2R_19138826_SNP [dm6]	C	G	7.063e^-5	0.144	INTRON CG15111
3L	8811323	3L_8811323_DEL [dm3] 3L_8818223_DEL [dm6]	ATAG	T	7.077e^-5	0.144	INTERGENIC
2R	17298230	2R_17298230_DEL [dm3] 2R_21410725_DEL [dm6]	GCTTGGG	G	7.101e^-5	0.144	INTRON Sdc
3L	474873	3L_474873_SNP [dm3] 3L_474873_SNP [dm6]	T	C	7.105e^-5	0.144	INTRON klar
3L	3591699	3L_3591699_SNP [dm3] 3L_3591699_SNP [dm6]	A	G	7.106e^-5	0.144	INTRON Eip63E
X	19254456	X_19254456_INS [dm3] X_19360423_INS [dm6]	T	TGTAATT	7.111e^-5	0.144	INTRON kek5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	8584799	3R_8584799_SNP [dm3] 3R_12759077_SNP [dm6]	T	C	7.122e^-5	0.144	INTRON beat-Vc
X	5845050	X_5845050_SNP [dm3] X_5951017_SNP [dm6]	G	A	7.126e^-5	0.144	DOWNSTREAM CG6041 INTRON CG32755	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	5845257	X_5845257_SNP [dm3] X_5951224_SNP [dm6]	A	T	7.126e^-5	0.144	SYNONYMOUS_CODING CG32755	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	16064215	3R_16064215_SNP [dm3] 3R_20238493_SNP [dm6]	C	A	7.126e^-5	0.144	INTRON Nlg4
3L	6492651	3L_6492651_SNP [dm3] 3L_6499551_SNP [dm6]	G	T	7.139e^-5	0.144	INTRON sfl	TF binding site BDTNP1_TFBS_dl
2R	7910512	2R_7910512_SNP [dm3] 2R_12023007_SNP [dm6]	A	G	7.152e^-5	0.144	DOWNSTREAM CG8964 INTERGENIC
2R	7912436	2R_7912436_SNP [dm3] 2R_12024931_SNP [dm6]	C	A	7.152e^-5	0.144	UTR_5_PRIME CG8964 DOWNSTREAM Mppe	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7919495	2R_7919495_SNP [dm3] 2R_12031990_SNP [dm6]	A	G	7.152e^-5	0.144	NON_SYNONYMOUS_CODING pds5
2R	9632123	2R_9632123_SNP [dm3] 2R_13744618_SNP [dm6]	C	T	7.152e^-5	0.144	INTRON fas
3L	4536383	3L_4536383_SNP [dm3] 3L_4536383_SNP [dm6]	T	C	7.152e^-5	0.144	INTRON CG11353
3R	10239423	3R_10239423_SNP [dm3] 3R_14413701_SNP [dm6]	C	A	7.163e^-5	0.144	INTRON cv-c	TF binding site BDTNP1_TFBS_prd
3R	25758629	3R_25758629_SNP [dm3] 3R_29932907_SNP [dm6]	C	T	7.173e^-5	0.144	NON_SYNONYMOUS_CODING Cog7 UPSTREAM CG42557 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	8081813	2L_8081813_INS [dm3] 2L_8081813_INS [dm6]	A	ATGGA	7.263e^-5	0.146	INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6401803	2R_6401803_SNP [dm3] 2R_10514298_SNP [dm6]	C	T	7.268e^-5	0.146	DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7927043	2R_7927043_SNP [dm3] 2R_12039538_SNP [dm6]	C	A	7.282e^-5	0.146	SYNONYMOUS_CODING RpIII128 DOWNSTREAM 128up	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22502634	3R_22502634_SNP [dm3] 3R_26676912_SNP [dm6]	A	G	7.311e^-5	0.146	INTRON beat-VII
2L	3429429	2L_3429429_SNP [dm3] 2L_3429429_SNP [dm6]	C	G	7.315e^-5	0.146	INTERGENIC
2L	8298758	2L_8298758_SNP [dm3] 2L_8298758_SNP [dm6]	A	G	7.337e^-5	0.146	INTRON Btk29A
2R	18696108	2R_18696108_SNP [dm3] 2R_22808603_SNP [dm6]	A	G	7.346e^-5	0.146	UTR_5_PRIME stl
2R	18696178	2R_18696178_SNP [dm3] 2R_22808673_SNP [dm6]	A	G	7.346e^-5	0.146	UTR_5_PRIME stl
2R	18696209	2R_18696209_SNP [dm3] 2R_22808704_SNP [dm6]	G	A	7.346e^-5	0.146	UTR_5_PRIME stl
2L	4302229	2L_4302229_SNP [dm3] 2L_4302229_SNP [dm6]	G	T	7.347e^-5	0.146	INTRON tutl
2R	7931856	2R_7931856_SNP [dm3] 2R_12044351_SNP [dm6]	T	A	7.348e^-5	0.146	UPSTREAM Drep-1 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	2309084	2L_2309084_SNP [dm3] 2L_2309084_SNP [dm6]	G	A	7.352e^-5	0.146	SYNONYMOUS_CODING CG9967 DOWNSTREAM CG16995	TF binding site mE1_TFBS_chinmo
2L	19055012	2L_19055012_SNP [dm3] 2L_19055012_SNP [dm6]	A	C	7.374e^-5	0.146	SYNONYMOUS_CODING CG10492	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6448633	2R_6448633_SNP [dm3] 2R_10561128_SNP [dm6]	T	C	7.379e^-5	0.146	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6183997	2L_6183997_INS [dm3] 2L_6183997_INS [dm6]	T	TT	7.399e^-5	0.146	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6183999	2L_6183999_SNP [dm3] 2L_6183999_SNP [dm6]	G	A	7.399e^-5	0.146	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6184002	2L_6184002_INS [dm3] 2L_6184002_INS [dm6]	T	TTTCGAGAA	7.399e^-5	0.146	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26030788	3R_26030788_SNP [dm3] 3R_30205066_SNP [dm6]	T	A	7.428e^-5	0.146	INTERGENIC
3R	19286651	3R_19286651_SNP [dm3] 3R_23460929_SNP [dm6]	A	T	7.435e^-5	0.146	INTRON CG4374
3L	10476620	3L_10476620_SNP [dm3] 3L_10483520_SNP [dm6]	A	T	7.447e^-5	0.146	INTRON A2bp1
3L	3591759	3L_3591759_SNP [dm3] 3L_3591759_SNP [dm6]	T	G	7.459e^-5	0.146	INTRON Eip63E
3R	18457193	3R_18457193_SNP [dm3] 3R_22631471_SNP [dm6]	A	G	7.461e^-5	0.146	DOWNSTREAM CR43474 INTRON loco	regulatory region REDfly_CRMs
X	4296425	X_4296425_INS [dm3] X_4402392_INS [dm6]	A	TCAGT	7.487e^-5	0.147	INTRON CR32773	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	6274251	2R_6274251_SNP [dm3] 2R_10386746_SNP [dm6]	T	C	7.493e^-5	0.147	INTRON CG42732
2R	7967918	2R_7967918_SNP [dm3] 2R_12080413_SNP [dm6]	G	A	7.516e^-5	0.147	UPSTREAM CG8888 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	21283989	X_21283989_INS [dm3] X_21412962_INS [dm6]	G	GC	7.527e^-5	0.147	INTERGENIC
X	6778195	X_6778195_INS [dm3] X_6884162_INS [dm6]	G	GGCAT	7.535e^-5	0.147	INTERGENIC
2L	5211004	2L_5211004_SNP [dm3] 2L_5211004_SNP [dm6]	T	G	7.538e^-5	0.147	SYNONYMOUS_CODING Cyp28d1
2R	11483367	2R_11483367_SNP [dm3] 2R_15595862_SNP [dm6]	T	C	7.579e^-5	0.147	INTERGENIC
3L	9748954	3L_9748954_SNP [dm3] 3L_9755854_SNP [dm6]	C	T	7.585e^-5	0.147	INTRON CG42268
3R	9591724	3R_9591724_SNP [dm3] 3R_13766002_SNP [dm6]	T	A	7.587e^-5	0.147	NON_SYNONYMOUS_CODING CG9312
2L	7831212	2L_7831212_SNP [dm3] 2L_7831212_SNP [dm6]	A	T	7.600e^-5	0.147	INTRON mts
2R	19192456	2R_19192456_DEL [dm3] 2R_23304933_DEL [dm6]	GGCAGGCACTTGGCGTGG...	G	7.621e^-5	0.148	INTERGENIC
2L	7111759	2L_7111759_SNP [dm3] 2L_7111759_SNP [dm6]	A	T	7.635e^-5	0.148	INTRON Pvf3
3L	9754043	3L_9754043_SNP [dm3] 3L_9760943_SNP [dm6]	A	G	7.677e^-5	0.148	UPSTREAM CG42268 EXON CR45407
2L	13594737	2L_13594737_SNP [dm3] 2L_13594737_SNP [dm6]	T	G	7.680e^-5	0.148	DOWNSTREAM CG9254 INTRON kuz
X	12915718	X_12915718_SNP [dm3] X_13021685_SNP [dm6]	T	C	7.697e^-5	0.149	UPSTREAM CG2209 INTRON rad
2L	7831897	2L_7831897_SNP [dm3] 2L_7831897_SNP [dm6]	C	G	7.710e^-5	0.149	UTR_3_PRIME mts
2L	1922883	2L_1922883_SNP [dm3] 2L_1922883_SNP [dm6]	A	G	7.722e^-5	0.149	INTRON CG7337
3R	19609698	3R_19609698_SNP [dm3] 3R_23783976_SNP [dm6]	T	C	7.746e^-5	0.149	INTRON mbc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1741895	2L_1741895_SNP [dm3] 2L_1741895_SNP [dm6]	C	T	7.753e^-5	0.149	SYNONYMOUS_CODING CG17646	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5358219	X_5358219_SNP [dm3] X_5464186_SNP [dm6]	G	T	7.764e^-5	0.149	UPSTREAM SPR INTRON SPR
2R	16122031	2R_16122031_INS [dm3] 2R_20234526_INS [dm6]	C	CC	7.768e^-5	0.149	UPSTREAM CG44624 INTRON CG11044
X	7930219	X_7930219_SNP [dm3] X_8036186_SNP [dm6]	T	C	7.775e^-5	0.149	INTRON CG2233	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	15551834	2L_15551834_SNP [dm3] 2L_15551834_SNP [dm6]	A	T	7.825e^-5	0.15	UTR_3_PRIME CG15256 UPSTREAM kek3 DOWNSTREAM CG15256
2L	15631629	2L_15631629_SNP [dm3] 2L_15631629_SNP [dm6]	C	T	7.843e^-5	0.15	INTRON CG18480	TF binding site mE1_TFBS_inv
2R	7944566	2R_7944566_SNP [dm3] 2R_12057061_SNP [dm6]	G	T	7.848e^-5	0.15	DOWNSTREAM CG44314 INTRON Drep-3
2R	7964695	2R_7964695_SNP [dm3] 2R_12077190_SNP [dm6]	G	A	7.859e^-5	0.15	SYNONYMOUS_CODING CG8888
3L	6258411	3L_6258411_SNP [dm3] 3L_6265311_SNP [dm6]	G	A	7.859e^-5	0.15	INTERGENIC
2R	15025195	2R_15025195_SNP [dm3] 2R_19137690_SNP [dm6]	T	G	7.894e^-5	0.15	UPSTREAM CG15118 INTRON CG15111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3L	994032	3L_994032_SNP [dm3] 3L_994032_SNP [dm6]	G	A	7.919e^-5	0.151	UTR_5_PRIME CG12038 DOWNSTREAM Glut1
3L	12927651	3L_12927651_SNP [dm3] 3L_12934551_SNP [dm6]	G	C	7.922e^-5	0.151	INTERGENIC
2R	6254711	2R_6254711_SNP [dm3] 2R_10367206_SNP [dm6]	C	T	7.947e^-5	0.151	INTRON CG42732
3R	26301390	3R_26301390_SNP [dm3] 3R_30475668_SNP [dm6]	C	G	7.982e^-5	0.151	INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	22401278	3L_22401278_SNP [dm3] 3L_22408178_SNP [dm6]	A	C	7.988e^-5	0.151	UPSTREAM Ten-m INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3L	22401289	3L_22401289_SNP [dm3] 3L_22408189_SNP [dm6]	C	G	7.988e^-5	0.151	UPSTREAM Ten-m INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3L	4637223	3L_4637223_DEL [dm3] 3L_4637223_DEL [dm6]	TCTGT	G	8.024e^-5	0.152	UTR_3_PRIME axo INTRON axo
3L	9306428	3L_9306428_SNP [dm3] 3L_9313328_SNP [dm6]	A	T	8.042e^-5	0.152	INTERGENIC
2R	9736706	2R_9736706_SNP [dm3] 2R_13849201_SNP [dm6]	G	C	8.074e^-5	0.152	SYNONYMOUS_CODING CG30484 UPSTREAM CG30485
2R	9741559	2R_9741559_INS [dm3] 2R_13854054_INS [dm6]	G	GGG	8.074e^-5	0.152	UPSTREAM CR44367 DOWNSTREAM CG6553 INTRON CG6543	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	9741793	2R_9741793_SNP [dm3] 2R_13854288_SNP [dm6]	G	A	8.074e^-5	0.152	UTR_5_PRIME CG6543 UPSTREAM CR44367 DOWNSTREAM CG6553 INTRON CG6543	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	951400	3L_951400_SNP [dm3] 3L_951400_SNP [dm6]	C	T	8.079e^-5	0.152	INTRON Glut1
2L	17060536	2L_17060536_SNP [dm3] 2L_17060536_SNP [dm6]	A	C	8.101e^-5	0.152	INTERGENIC
2L	768526	2L_768526_SNP [dm3] 2L_768526_SNP [dm6]	T	A	8.110e^-5	0.152	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	14832441	2L_14832441_SNP [dm3] 2L_14832441_SNP [dm6]	T	A	8.117e^-5	0.152	INTERGENIC
3R	23434634	3R_23434634_SNP [dm3] 3R_27608912_SNP [dm6]	G	A	8.132e^-5	0.152	INTRON Tusp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10781424	3R_10781424_SNP [dm3] 3R_14955702_SNP [dm6]	T	C	8.141e^-5	0.152	INTERGENIC
2R	9742829	2R_9742829_SNP [dm3] 2R_13855324_SNP [dm6]	T	C	8.171e^-5	0.152	SYNONYMOUS_CODING CG6553 UPSTREAM CG6543 DOWNSTREAM tum EXON CR44367
2L	800689	2L_800689_SNP [dm3] 2L_800689_SNP [dm6]	G	A	8.172e^-5	0.152	DOWNSTREAM CR45259 INTERGENIC
2L	802337	2L_802337_SNP [dm3] 2L_802337_SNP [dm6]	G	T	8.172e^-5	0.152	INTERGENIC
3R	9850369	3R_9850369_SNP [dm3] 3R_14024647_SNP [dm6]	A	G	8.179e^-5	0.152	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2599859	2L_2599859_SNP [dm3] 2L_2599859_SNP [dm6]	G	C	8.181e^-5	0.152	EXON CR44790
3R	19358694	3R_19358694_SNP [dm3] 3R_23532972_SNP [dm6]	C	T	8.201e^-5	0.152	UTR_3_PRIME CG10170

By genomic position
Variant impact
Gene name

Microbiota_OTU045 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results