DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.756e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.07619

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

6487 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	1267036	3L_1267036_SNP [dm3] 3L_1267036_SNP [dm6]	C	A	8.426e^-12	1.568e^-5	INTRON CG9134
3R	22459768	3R_22459768_SNP [dm3] 3R_26634046_SNP [dm6]	G	A	1.604e^-10	1.138e^-4	NON_SYNONYMOUS_CODING TwdlH UPSTREAM TwdlR
2R	13394527	2R_13394527_SNP [dm3] 2R_17507022_SNP [dm6]	A	G	1.834e^-10	1.138e^-4	UTR_3_PRIME CG43164 INTRON CG43164
2R	17032827	2R_17032827_SNP [dm3] 2R_21145322_SNP [dm6]	T	C	1.380e^-9	4.949e^-4	SYNONYMOUS_CODING Xbp1 UTR_3_PRIME Xbp1 UPSTREAM Hmg-2
3L	17621401	3L_17621401_SNP [dm3] 3L_17628301_SNP [dm6]	G	A	1.465e^-9	4.949e^-4	SYNONYMOUS_CODING CG7510 DOWNSTREAM scaRNA:MeU4-A65
3R	15006202	3R_15006202_SNP [dm3] 3R_19180480_SNP [dm6]	A	G	1.759e^-9	4.949e^-4	START_GAINED CG5555 UTR_5_PRIME CG5555 UPSTREAM CG31475 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	1265905	3L_1265905_SNP [dm3] 3L_1265905_SNP [dm6]	A	G	2.128e^-9	4.949e^-4	UTR_5_PRIME CG9134 INTRON CG9134	TF binding site mE1_TFBS_Trl
3L	1265911	3L_1265911_SNP [dm3] 3L_1265911_SNP [dm6]	A	T	2.128e^-9	4.949e^-4	UTR_5_PRIME CG9134 INTRON CG9134	TF binding site mE1_TFBS_Trl
3L	20125117	3L_20125117_SNP [dm3] 3L_20132017_SNP [dm6]	T	A	2.935e^-9	5.153e^-4	UPSTREAM obst-J DOWNSTREAM CG7335 INTRON gig
2L	4651746	2L_4651746_SNP [dm3] 2L_4651746_SNP [dm6]	A	T	3.016e^-9	5.153e^-4	INTRON CG3355
2R	13394575	2R_13394575_SNP [dm3] 2R_17507070_SNP [dm6]	T	A	3.214e^-9	5.153e^-4	UTR_3_PRIME CG43164 INTRON CG43164
X	10448694	X_10448694_SNP [dm3] X_10554661_SNP [dm6]	A	C	3.466e^-9	5.153e^-4	INTRON spri
3L	17820876	3L_17820876_SNP [dm3] 3L_17827776_SNP [dm6]	C	G	3.612e^-9	5.153e^-4	INTRON Grd
2L	4651749	2L_4651749_SNP [dm3] 2L_4651749_SNP [dm6]	A	T	3.878e^-9	5.153e^-4	INTRON CG3355
3R	18302458	3R_18302458_SNP [dm3] 3R_22476736_SNP [dm6]	C	T	4.774e^-9	5.537e^-4	INTRON Nrx-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10742973	3R_10742973_SNP [dm3] 3R_14917251_SNP [dm6]	G	T	4.780e^-9	5.537e^-4	INTERGENIC
3R	7408270	3R_7408270_SNP [dm3] 3R_11582548_SNP [dm6]	G	A	5.545e^-9	5.537e^-4	UPSTREAM wkd INTRON wkd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	20142685	3L_20142685_SNP [dm3] 3L_20149585_SNP [dm6]	C	G	5.573e^-9	5.537e^-4	DOWNSTREAM CG42674 INTERGENIC
2R	17786108	2R_17786108_SNP [dm3] 2R_21898603_SNP [dm6]	G	C	5.893e^-9	5.537e^-4	INTRON Fili
X	9995477	X_9995477_SNP [dm3] X_10101444_SNP [dm6]	T	A	6.054e^-9	5.537e^-4	INTRON RhoU
3R	27128898	3R_27128898_SNP [dm3] 3R_31303176_SNP [dm6]	T	G	6.250e^-9	5.537e^-4	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_sens
3R	10742971	3R_10742971_SNP [dm3] 3R_14917249_SNP [dm6]	A	G	7.093e^-9	5.631e^-4	INTERGENIC
X	9989207	X_9989207_SNP [dm3] X_10095174_SNP [dm6]	A	T	7.098e^-9	5.631e^-4	INTRON RhoU
3R	10742970	3R_10742970_SNP [dm3] 3R_14917248_SNP [dm6]	A	G	7.263e^-9	5.631e^-4	INTERGENIC
2R	15363608	2R_15363608_SNP [dm3] 2R_19476103_SNP [dm6]	C	A	7.628e^-9	5.677e^-4	INTRON par-1
2L	4651752	2L_4651752_SNP [dm3] 2L_4651752_SNP [dm6]	G	T	8.881e^-9	6.355e^-4	INTRON CG3355
2R	17907306	2R_17907306_SNP [dm3] 2R_22019801_SNP [dm6]	A	C	1.160e^-8	7.991e^-4	INTRON CG34370
2L	4651847	2L_4651847_SNP [dm3] 2L_4651847_SNP [dm6]	A	C	1.409e^-8	9.360e^-4	SYNONYMOUS_CODING CG3355	TF binding site mE1_TFBS_chinmo
2L	18345672	2L_18345672_SNP [dm3] 2L_18345672_SNP [dm6]	T	C	1.830e^-8	0.001	INTRON Fas3	TF binding site mE1_TFBS_inv
3R	25907637	3R_25907637_SNP [dm3] 3R_30081915_SNP [dm6]	A	C	1.831e^-8	0.001	INTRON sima
3L	14609897	3L_14609897_SNP [dm3] 3L_14616797_SNP [dm6]	C	A	1.923e^-8	0.001	INTRON shd
3L	14609938	3L_14609938_SNP [dm3] 3L_14616838_SNP [dm6]	A	G	1.923e^-8	0.001	INTRON shd
3R	8733591	3R_8733591_SNP [dm3] 3R_12907869_SNP [dm6]	G	A	1.924e^-8	0.001	INTERGENIC
3R	22214579	3R_22214579_SNP [dm3] 3R_26388857_SNP [dm6]	T	A	1.999e^-8	0.001	INTERGENIC
2L	16530582	2L_16530582_SNP [dm3] 2L_16530582_SNP [dm6]	A	T	2.049e^-8	0.001	INTRON CG5953
X	10146042	X_10146042_SNP [dm3] X_10252009_SNP [dm6]	A	G	2.055e^-8	0.001	INTRON Hk
3R	14718822	3R_14718822_SNP [dm3] 3R_18893100_SNP [dm6]	C	G	2.103e^-8	0.001	INTERGENIC
2R	18930044	2R_18930044_SNP [dm3] 2R_23042521_SNP [dm6]	C	T	2.126e^-8	0.001	UTR_5_PRIME CG42741 INTRON twi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1683617	3L_1683617_SNP [dm3] 3L_1683617_SNP [dm6]	A	T	2.126e^-8	0.001	INTRON CG7991	TF binding site mE1_TFBS_chinmo
3L	20148520	3L_20148520_SNP [dm3] 3L_20155420_SNP [dm6]	T	A	2.284e^-8	0.001	INTRON CG42674
X	198663	X_198663_SNP [dm3] X_304630_SNP [dm6]	C	T	2.292e^-8	0.001	INTRON CG3777	TF binding site BDTNP1_TFBS_twi
3L	14609826	3L_14609826_SNP [dm3] 3L_14616726_SNP [dm6]	T	G	2.559e^-8	0.001	INTRON shd
2R	7946478	2R_7946478_SNP [dm3] 2R_12058973_SNP [dm6]	C	A	2.714e^-8	0.001	INTRON Drep-3
2R	13568462	2R_13568462_SNP [dm3] 2R_17680957_SNP [dm6]	A	G	3.405e^-8	0.001	INTRON Sema-1b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13568471	2R_13568471_INS [dm3] 2R_17680966_INS [dm6]	T	TATAT	3.405e^-8	0.001	INTRON Sema-1b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2179675	X_2179675_INS [dm3] X_2285642_INS [dm6]	A	AG	3.570e^-8	0.001	INTRON CG2865	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13568877	2R_13568877_SNP [dm3] 2R_17681372_SNP [dm6]	C	A	3.606e^-8	0.001	INTRON Sema-1b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4651991	2L_4651991_SNP [dm3] 2L_4651991_SNP [dm6]	C	T	3.691e^-8	0.001	SYNONYMOUS_CODING CG3355	TF binding site mE1_TFBS_chinmo
2R	13568487	2R_13568487_SNP [dm3] 2R_17680982_SNP [dm6]	T	C	3.700e^-8	0.001	INTRON Sema-1b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18511623	2R_18511623_SNP [dm3] 2R_22624118_SNP [dm6]	C	T	3.788e^-8	0.001	INTRON CG33143
2L	10941742	2L_10941742_SNP [dm3] 2L_10941742_SNP [dm6]	T	A	3.851e^-8	0.001	DOWNSTREAM CR44492 INTRON dpr2
3R	20598446	3R_20598446_SNP [dm3] 3R_24772724_SNP [dm6]	G	A	3.967e^-8	0.001	INTRON CG42331
2L	10941707	2L_10941707_SNP [dm3] 2L_10941707_SNP [dm6]	C	T	4.519e^-8	0.002	DOWNSTREAM CR44492 INTRON dpr2
3R	6685499	3R_6685499_SNP [dm3] 3R_10859777_SNP [dm6]	G	A	4.793e^-8	0.002	SYNONYMOUS_CODING CG14694 DOWNSTREAM CG6574	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5951250	X_5951250_DEL [dm3] X_6057217_DEL [dm6]	TTT	T	4.926e^-8	0.002	INTRON CG5921	TF binding site BDTNP1_TFBS_twi
3R	18517580	3R_18517580_SNP [dm3] 3R_22691858_SNP [dm6]	T	G	5.156e^-8	0.002	NON_SYNONYMOUS_CODING Nup133	TF binding site mE1_TFBS_cad
3L	9443614	3L_9443614_SNP [dm3] 3L_9450514_SNP [dm6]	C	A	5.442e^-8	0.002	UTR_3_PRIME CG3529 DOWNSTREAM CG3448
3L	14609765	3L_14609765_SNP [dm3] 3L_14616665_SNP [dm6]	A	T	6.052e^-8	0.002	UTR_5_PRIME shd INTRON shd
3L	20124067	3L_20124067_SNP [dm3] 3L_20130967_SNP [dm6]	T	A	6.389e^-8	0.002	SYNONYMOUS_CODING obst-J INTRON gig	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20598451	3R_20598451_SNP [dm3] 3R_24772729_SNP [dm6]	A	C	6.696e^-8	0.002	INTRON CG42331
3L	1682547	3L_1682547_SNP [dm3] 3L_1682547_SNP [dm6]	T	C	7.440e^-8	0.002	INTRON CG7991
2R	18610848	2R_18610848_SNP [dm3] 2R_22723343_SNP [dm6]	T	A	7.551e^-8	0.002	INTRON jbug	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	12161557	2L_12161557_SNP [dm3] 2L_12161557_SNP [dm6]	T	A	7.604e^-8	0.002	NON_SYNONYMOUS_CODING CG31760 UPSTREAM CG31861
3R	24458866	3R_24458866_SNP [dm3] 3R_28633144_SNP [dm6]	T	A	8.635e^-8	0.003	INTRON CG10011	TF binding site mE1_TFBS_sens
2R	14553551	2R_14553551_SNP [dm3] 2R_18666046_SNP [dm6]	A	T	8.959e^-8	0.003	UPSTREAM CG33136 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
3R	10797461	3R_10797461_SNP [dm3] 3R_14971739_SNP [dm6]	C	G	9.646e^-8	0.003	INTERGENIC
3L	14609861	3L_14609861_SNP [dm3] 3L_14616761_SNP [dm6]	T	C	9.998e^-8	0.003	INTRON shd
3L	14609881	3L_14609881_SNP [dm3] 3L_14616781_SNP [dm6]	T	A	9.998e^-8	0.003	INTRON shd
3R	23312737	3R_23312737_SNP [dm3] 3R_27487015_SNP [dm6]	T	C	1.002e^-7	0.003	UPSTREAM Gr98a INTERGENIC
3R	26002253	3R_26002253_SNP [dm3] 3R_30176531_SNP [dm6]	C	A	1.004e^-7	0.003	NON_SYNONYMOUS_CODING CG1983
3R	20500622	3R_20500622_SNP [dm3] 3R_24674900_SNP [dm6]	T	C	1.006e^-7	0.003	INTRON slo
3R	16671543	3R_16671543_SNP [dm3] 3R_20845821_SNP [dm6]	G	A	1.048e^-7	0.003	DOWNSTREAM CG15695 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17907323	2R_17907323_SNP [dm3] 2R_22019818_SNP [dm6]	G	T	1.084e^-7	0.003	INTRON CG34370
2R	19824631	2R_19824631_SNP [dm3] 2R_23937108_SNP [dm6]	G	T	1.085e^-7	0.003	UTR_3_PRIME CG3735 DOWNSTREAM CG3735
X	16319823	X_16319823_SNP [dm3] X_16425790_SNP [dm6]	G	C	1.113e^-7	0.003	INTRON hang	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	10448953	X_10448953_SNP [dm3] X_10554920_SNP [dm6]	A	G	1.148e^-7	0.003	INTRON spri
2L	4652030	2L_4652030_SNP [dm3] 2L_4652030_SNP [dm6]	T	C	1.330e^-7	0.003	SYNONYMOUS_CODING CG3355	TF binding site mE1_TFBS_chinmo
2R	18064541	2R_18064541_SNP [dm3] 2R_22177036_SNP [dm6]	C	T	1.332e^-7	0.003	SYNONYMOUS_CODING CG6758 UPSTREAM CR45151 DOWNSTREAM CG11170	TF binding site mE1_TFBS_chinmo
X	10448920	X_10448920_SNP [dm3] X_10554887_SNP [dm6]	A	C	1.411e^-7	0.003	INTRON spri
2R	14693442	2R_14693442_SNP [dm3] 2R_18805937_SNP [dm6]	T	C	1.533e^-7	0.003	INTRON CR44468 EXON CR44468	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20598378	3R_20598378_SNP [dm3] 3R_24772656_SNP [dm6]	A	C	1.536e^-7	0.003	INTRON CG42331
3L	449945	3L_449945_SNP [dm3] 3L_449945_SNP [dm6]	T	A	1.540e^-7	0.003	INTRON klar
3L	20151293	3L_20151293_SNP [dm3] 3L_20158193_SNP [dm6]	G	T	1.579e^-7	0.004	INTRON CG42674
3L	17828757	3L_17828757_SNP [dm3] 3L_17835657_SNP [dm6]	A	G	1.589e^-7	0.004	UPSTREAM CG32189 INTRON Grd
X	10448670	X_10448670_SNP [dm3] X_10554637_SNP [dm6]	A	G	1.605e^-7	0.004	INTRON spri
X	14081697	X_14081697_SNP [dm3] X_14187664_SNP [dm6]	C	A	1.738e^-7	0.004	UTR_3_PRIME CG12481
3L	17693433	3L_17693433_SNP [dm3] 3L_17700333_SNP [dm6]	T	G	1.866e^-7	0.004	INTRON Ccn
X	9995812	X_9995812_SNP [dm3] X_10101779_SNP [dm6]	T	A	1.907e^-7	0.004	INTRON RhoU
3L	3850886	3L_3850886_SNP [dm3] 3L_3850886_SNP [dm6]	C	T	1.923e^-7	0.004	INTRON Awh
2L	4792467	2L_4792467_SNP [dm3] 2L_4792467_SNP [dm6]	A	G	1.957e^-7	0.004	INTRON CG15630
3L	826240	3L_826240_SNP [dm3] 3L_826240_SNP [dm6]	C	T	2.148e^-7	0.004	DOWNSTREAM CG13900 & 2 others INTERGENIC
2R	13531420	2R_13531420_SNP [dm3] 2R_17643915_SNP [dm6]	T	A	2.193e^-7	0.004	INTERGENIC
2R	13531421	2R_13531421_SNP [dm3] 2R_17643916_SNP [dm6]	C	A	2.193e^-7	0.004	INTERGENIC
2R	13531428	2R_13531428_SNP [dm3] 2R_17643923_SNP [dm6]	G	A	2.193e^-7	0.004	INTERGENIC
2L	7093843	2L_7093843_SNP [dm3] 2L_7093843_SNP [dm6]	A	C	2.200e^-7	0.004	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17693439	3L_17693439_SNP [dm3] 3L_17700339_SNP [dm6]	G	T	2.206e^-7	0.004	INTRON Ccn
2R	8720799	2R_8720799_SNP [dm3] 2R_12833294_SNP [dm6]	G	T	2.227e^-7	0.004	INTERGENIC
3L	23247735	3L_23247735_SNP [dm3] 3L_23254635_SNP [dm6]	A	G	2.341e^-7	0.004	INTRON nAChRalpha4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12746551	2R_12746551_DEL [dm3] 2R_16859046_DEL [dm6]	TAACT	T	2.437e^-7	0.004	INTRON Dek
3R	10797544	3R_10797544_SNP [dm3] 3R_14971822_SNP [dm6]	A	T	2.451e^-7	0.004	INTERGENIC
3R	10797558	3R_10797558_SNP [dm3] 3R_14971836_SNP [dm6]	C	T	2.451e^-7	0.004	INTERGENIC
3R	10797628	3R_10797628_DEL [dm3] 3R_14971906_DEL [dm6]	TTCACTATAAATAAGAAGAA...	T	2.451e^-7	0.004	INTERGENIC
3R	10797652	3R_10797652_DEL [dm3] 3R_14971930_DEL [dm6]	AG	A	2.451e^-7	0.004	INTERGENIC
X	13194895	X_13194895_SNP [dm3] X_13300862_SNP [dm6]	G	A	2.481e^-7	0.004	DOWNSTREAM CG1622 INTRON CG1764
X	9995825	X_9995825_SNP [dm3] X_10101792_SNP [dm6]	T	A	2.506e^-7	0.004	INTRON RhoU
3R	2672894	3R_2672894_SNP [dm3] 3R_6847172_SNP [dm6]	C	A	2.701e^-7	0.005	INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13791397	2R_13791397_SNP [dm3] 2R_17903892_SNP [dm6]	C	T	2.742e^-7	0.005	INTRON Elk
2R	13531426	2R_13531426_SNP [dm3] 2R_17643921_SNP [dm6]	A	T	2.767e^-7	0.005	INTERGENIC
2R	13566004	2R_13566004_SNP [dm3] 2R_17678499_SNP [dm6]	G	A	2.846e^-7	0.005	UTR_5_PRIME Sema-1b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	15701482	3R_15701482_SNP [dm3] 3R_19875760_SNP [dm6]	C	A	2.896e^-7	0.005	UPSTREAM CG4562 DOWNSTREAM CG17186 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	9399356	X_9399356_SNP [dm3] X_9505323_SNP [dm6]	G	A	2.902e^-7	0.005	INTRON CG32700
X	9989227	X_9989227_SNP [dm3] X_10095194_SNP [dm6]	A	C	2.925e^-7	0.005	INTRON RhoU
3L	1395339	3L_1395339_DEL [dm3] 3L_1395339_DEL [dm6]	GATGTTTC	G	3.104e^-7	0.005	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13531409	2R_13531409_SNP [dm3] 2R_17643904_SNP [dm6]	A	G	3.111e^-7	0.005	INTERGENIC
2R	13531413	2R_13531413_MNP [dm3] 2R_17643908_MNP [dm6]	ACAAC	TGTTA	3.111e^-7	0.005	INTERGENIC
3R	10797612	3R_10797612_SNP [dm3] 3R_14971890_SNP [dm6]	G	A	3.150e^-7	0.005	INTERGENIC
X	12290768	X_12290768_SNP [dm3] X_12396735_SNP [dm6]	A	G	3.168e^-7	0.005	INTERGENIC
3L	16291005	3L_16291005_SNP [dm3] 3L_16297905_SNP [dm6]	G	A	3.235e^-7	0.005	INTERGENIC
3L	14609995	3L_14609995_SNP [dm3] 3L_14616895_SNP [dm6]	G	A	3.255e^-7	0.005	INTRON shd
2R	13531425	2R_13531425_SNP [dm3] 2R_17643920_SNP [dm6]	G	T	3.376e^-7	0.005	INTERGENIC
3L	5708911	3L_5708911_SNP [dm3] 3L_5715811_SNP [dm6]	G	A	3.399e^-7	0.005	INTRON sif	TF binding site mE1_TFBS_chinmo
3R	22712487	3R_22712487_SNP [dm3] 3R_26886765_SNP [dm6]	G	C	3.503e^-7	0.005	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14762239	2R_14762239_SNP [dm3] 2R_18874734_SNP [dm6]	C	T	3.595e^-7	0.005	INTERGENIC
2R	20583342	2R_20583342_SNP [dm3] 2R_24695819_SNP [dm6]	G	C	3.848e^-7	0.006	UTR_3_PRIME Mid1
3L	20150894	3L_20150894_SNP [dm3] 3L_20157794_SNP [dm6]	A	G	3.862e^-7	0.006	INTRON CG42674
3R	10797451	3R_10797451_SNP [dm3] 3R_14971729_SNP [dm6]	G	A	3.886e^-7	0.006	INTERGENIC
3R	10797649	3R_10797649_SNP [dm3] 3R_14971927_SNP [dm6]	T	G	4.078e^-7	0.006	INTERGENIC
X	9931746	X_9931746_SNP [dm3] X_10037713_SNP [dm6]	T	C	4.094e^-7	0.006	SYNONYMOUS_CODING Cht6 INTRON Cht6
3L	16291006	3L_16291006_SNP [dm3] 3L_16297906_SNP [dm6]	T	A	4.210e^-7	0.006	INTERGENIC
X	19551288	X_19551288_SNP [dm3] X_19657255_SNP [dm6]	A	T	4.318e^-7	0.006	NON_SYNONYMOUS_CODING CG14215	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20157463	3L_20157463_SNP [dm3] 3L_20164363_SNP [dm6]	T	C	4.522e^-7	0.006	START_GAINED CG42674 UTR_5_PRIME CG42674 INTRON CG42674
2R	14280452	2R_14280452_SNP [dm3] 2R_18392947_SNP [dm6]	A	G	4.590e^-7	0.006	UPSTREAM Idgf5 INTERGENIC
2R	11283543	2R_11283543_SNP [dm3] 2R_15396038_SNP [dm6]	T	C	4.707e^-7	0.007	INTERGENIC
3R	6852418	3R_6852418_SNP [dm3] 3R_11026696_SNP [dm6]	A	C	4.796e^-7	0.007	INTRON CG34114
3R	18517418	3R_18517418_SNP [dm3] 3R_22691696_SNP [dm6]	A	G	4.954e^-7	0.007	INTRON Nup133	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18517583	3R_18517583_SNP [dm3] 3R_22691861_SNP [dm6]	G	A	4.954e^-7	0.007	NON_SYNONYMOUS_CODING Nup133	TF binding site mE1_TFBS_cad
2R	14963371	2R_14963371_SNP [dm3] 2R_19075866_SNP [dm6]	A	T	4.958e^-7	0.007	INTRON 5-HT1A
X	9215118	X_9215118_SNP [dm3] X_9321085_SNP [dm6]	A	C	5.009e^-7	0.007	NON_SYNONYMOUS_CODING c12.2	TF binding site mE1_TFBS_cad
2L	12403791	2L_12403791_SNP [dm3] 2L_12403791_SNP [dm6]	A	C	5.031e^-7	0.007	NON_SYNONYMOUS_CODING vir-1	TF binding site mE1_TFBS_HSA
3L	7229505	3L_7229505_SNP [dm3] 3L_7236405_SNP [dm6]	T	A	5.069e^-7	0.007	DOWNSTREAM CG14826 & 1 other INTERGENIC
X	178616	X_178616_SNP [dm3] X_284583_SNP [dm6]	T	A	5.215e^-7	0.007	UTR_3_PRIME CG13375 INTRON CG3777
2L	4650675	2L_4650675_SNP [dm3] 2L_4650675_SNP [dm6]	T	C	5.438e^-7	0.007	UPSTREAM CG3355 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16465492	2R_16465492_SNP [dm3] 2R_20577987_SNP [dm6]	C	G	5.517e^-7	0.007	INTRON qsm
3L	15056968	3L_15056968_SNP [dm3] 3L_15063868_SNP [dm6]	A	T	5.543e^-7	0.007	INTRON Sytbeta
3R	25882076	3R_25882076_SNP [dm3] 3R_30056354_SNP [dm6]	G	T	5.543e^-7	0.007	NON_SYNONYMOUS_CODING CG15526 UPSTREAM CG7950 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	6605836	X_6605836_SNP [dm3] X_6711803_SNP [dm6]	T	A	5.543e^-7	0.007	INTRON CG14441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7244863	3L_7244863_SNP [dm3] 3L_7251763_SNP [dm6]	G	A	5.575e^-7	0.007	SYNONYMOUS_CODING CG14830 EXON CR43470	TF binding site mE1_TFBS_chinmo
2L	5618785	2L_5618785_DEL [dm3] 2L_5618785_DEL [dm6]	AATTTAAAGAC...	A	5.794e^-7	0.007	UPSTREAM CG14010 DOWNSTREAM CR44796 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	7944089	X_7944089_SNP [dm3] X_8050056_SNP [dm6]	A	G	5.814e^-7	0.007	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27128968	3R_27128968_SNP [dm3] 3R_31303246_SNP [dm6]	C	T	6.032e^-7	0.007	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_sens
X	2592987	X_2592987_SNP [dm3] X_2698954_SNP [dm6]	C	T	6.059e^-7	0.007	SYNONYMOUS_CODING CG2662 UPSTREAM CG2658	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	23677224	3R_23677224_SNP [dm3] 3R_27851502_SNP [dm6]	A	G	6.241e^-7	0.008	INTRON CG34353
X	12777562	X_12777562_SNP [dm3] X_12883529_SNP [dm6]	C	G	6.336e^-7	0.008	INTRON Pde9
2R	13547055	2R_13547055_SNP [dm3] 2R_17659550_SNP [dm6]	T	A	6.425e^-7	0.008	INTRON CCHa1-R
3L	16134382	3L_16134382_DEL [dm3] 3L_16141282_DEL [dm6]	CGA	C	6.486e^-7	0.008	INTRON CG5151 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6848706	3R_6848706_SNP [dm3] 3R_11022984_SNP [dm6]	C	A	6.556e^-7	0.008	INTRON CG34114
3R	22214560	3R_22214560_SNP [dm3] 3R_26388838_SNP [dm6]	C	G	6.588e^-7	0.008	INTERGENIC
3L	16388235	3L_16388235_SNP [dm3] 3L_16395135_SNP [dm6]	G	A	6.711e^-7	0.008	SYNONYMOUS_CODING Grp INTRON CG44836	TF binding site mE1_TFBS_HSA
3L	16388311	3L_16388311_SNP [dm3] 3L_16395211_SNP [dm6]	G	A	6.711e^-7	0.008	NON_SYNONYMOUS_CODING Grp INTRON CG44836	TF binding site mE1_TFBS_HSA
X	6605837	X_6605837_SNP [dm3] X_6711804_SNP [dm6]	G	T	6.801e^-7	0.008	INTRON CG14441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15787926	3R_15787926_SNP [dm3] 3R_19962204_SNP [dm6]	C	T	6.803e^-7	0.008	INTRON Hs6st
3R	15788050	3R_15788050_SNP [dm3] 3R_19962328_SNP [dm6]	C	T	6.803e^-7	0.008	INTRON Hs6st
2R	14694818	2R_14694818_INS [dm3] 2R_18807313_INS [dm6]	A	AGA	6.833e^-7	0.008	DOWNSTREAM CR44468 INTERGENIC	TF binding site mE1_TFBS_bab1
X	9931592	X_9931592_SNP [dm3] X_10037559_SNP [dm6]	A	C	6.851e^-7	0.008	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6
3R	17957078	3R_17957078_SNP [dm3] 3R_22131356_SNP [dm6]	A	G	6.866e^-7	0.008	INTRON CG42390
X	21867661	X_21867661_SNP [dm3] X_22465825_SNP [dm6]	T	G	6.878e^-7	0.008	UPSTREAM CG14619 INTRON CG14619
3L	20143202	3L_20143202_SNP [dm3] 3L_20150102_SNP [dm6]	T	C	6.920e^-7	0.008	UTR_3_PRIME CG42674
2L	5618780	2L_5618780_DEL [dm3] 2L_5618780_DEL [dm6]	CCA	C	6.923e^-7	0.008	UPSTREAM CG14010 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1337513	2L_1337513_SNP [dm3] 2L_1337513_SNP [dm6]	C	T	6.990e^-7	0.008	INTERGENIC
2L	11246817	2L_11246817_DEL [dm3] 2L_11246817_DEL [dm6]	GTCCCGAATTTTTTTGTAAG...	G	7.017e^-7	0.008	INTRON ab
2L	3794765	2L_3794765_SNP [dm3] 2L_3794765_SNP [dm6]	T	G	7.064e^-7	0.008	SYNONYMOUS_CODING CG3921
2R	13531433	2R_13531433_SNP [dm3] 2R_17643928_SNP [dm6]	T	A	7.082e^-7	0.008	INTERGENIC
2R	13531436	2R_13531436_SNP [dm3] 2R_17643931_SNP [dm6]	T	A	7.082e^-7	0.008	INTERGENIC
2R	13531438	2R_13531438_SNP [dm3] 2R_17643933_SNP [dm6]	A	T	7.082e^-7	0.008	INTERGENIC
X	20215525	X_20215525_SNP [dm3] X_20344498_SNP [dm6]	T	A	7.310e^-7	0.008	INTERGENIC
3L	826265	3L_826265_SNP [dm3] 3L_826265_SNP [dm6]	T	A	7.398e^-7	0.008	DOWNSTREAM CG13900 & 2 others INTERGENIC
3R	19176120	3R_19176120_SNP [dm3] 3R_23350398_SNP [dm6]	C	G	7.419e^-7	0.008	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20223818	2R_20223818_SNP [dm3] 2R_24336295_SNP [dm6]	C	T	7.440e^-7	0.008	UPSTREAM CR44282 INTERGENIC
2R	11901212	2R_11901212_DEL [dm3] 2R_16013707_DEL [dm6]	CTATGCATC	C	7.451e^-7	0.008	UTR_3_PRIME CG8389 DOWNSTREAM Prosbeta1
3R	23424149	3R_23424149_SNP [dm3] 3R_27598427_SNP [dm6]	T	G	7.625e^-7	0.008	UTR_3_PRIME dsd
2R	16465493	2R_16465493_SNP [dm3] 2R_20577988_SNP [dm6]	C	A	7.635e^-7	0.008	INTRON qsm
2L	1337582	2L_1337582_DEL [dm3] 2L_1337582_DEL [dm6]	TA	T	7.643e^-7	0.008	INTERGENIC
3R	27129280	3R_27129280_SNP [dm3] 3R_31303558_SNP [dm6]	A	G	7.747e^-7	0.008	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5501178	X_5501178_SNP [dm3] X_5607145_SNP [dm6]	C	G	7.759e^-7	0.008	INTRON Vsx1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	9989228	X_9989228_SNP [dm3] X_10095195_SNP [dm6]	T	C	7.876e^-7	0.008	INTRON RhoU
X	12729468	X_12729468_DEL [dm3] X_12835435_DEL [dm6]	ACACA	A	7.989e^-7	0.008	INTRON Pde9
2R	14518137	2R_14518137_SNP [dm3] 2R_18630632_SNP [dm6]	T	G	8.101e^-7	0.008	SYNONYMOUS_CODING CG5482
2R	14518146	2R_14518146_SNP [dm3] 2R_18630641_SNP [dm6]	A	G	8.101e^-7	0.008	SYNONYMOUS_CODING CG5482
3L	18909186	3L_18909186_SNP [dm3] 3L_18916086_SNP [dm6]	G	T	8.184e^-7	0.008	INTERGENIC
X	12263218	X_12263218_SNP [dm3] X_12369185_SNP [dm6]	A	C	8.185e^-7	0.008	INTERGENIC
3R	27302133	3R_27302133_SNP [dm3] 3R_31476411_SNP [dm6]	T	A	8.213e^-7	0.008	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5364066	2L_5364066_SNP [dm3] 2L_5364066_SNP [dm6]	A	T	8.333e^-7	0.008	DOWNSTREAM nompC INTRON nompC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1681889	3L_1681889_SNP [dm3] 3L_1681889_SNP [dm6]	A	C	8.354e^-7	0.008	INTRON CG7991
X	9797122	X_9797122_SNP [dm3] X_9903089_SNP [dm6]	G	T	8.500e^-7	0.008	INTERGENIC
2R	17347677	2R_17347677_DEL [dm3] 2R_21460172_DEL [dm6]	ATATATAAATAAATATGTAA...	GTAAATATGTTTTTGTGTAT...	8.575e^-7	0.008	INTRON Sdc
3L	5352913	3L_5352913_SNP [dm3] 3L_5359813_SNP [dm6]	T	C	8.590e^-7	0.008	UPSTREAM CG4769 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	1079048	3R_1079048_SNP [dm3] 3R_5253326_SNP [dm6]	A	G	8.644e^-7	0.008	UTR_5_PRIME CG1113 UPSTREAM CG1113
3R	6852842	3R_6852842_SNP [dm3] 3R_11027120_SNP [dm6]	A	C	8.757e^-7	0.008	INTRON CG34114
3L	16388329	3L_16388329_SNP [dm3] 3L_16395229_SNP [dm6]	C	T	8.764e^-7	0.008	SYNONYMOUS_CODING Grp INTRON CG44836
3R	6681402	3R_6681402_SNP [dm3] 3R_10855680_SNP [dm6]	G	A	8.803e^-7	0.008	SYNONYMOUS_CODING CG4511	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3794762	2L_3794762_SNP [dm3] 2L_3794762_SNP [dm6]	T	C	9.006e^-7	0.008	SYNONYMOUS_CODING CG3921
2R	8885486	2R_8885486_SNP [dm3] 2R_12997981_SNP [dm6]	T	A	9.036e^-7	0.008	INTRON Su_z_2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	7357495	2L_7357495_SNP [dm3] 2L_7357495_SNP [dm6]	T	A	9.058e^-7	0.008	INTERGENIC
3L	18111398	3L_18111398_SNP [dm3] 3L_18118298_SNP [dm6]	C	G	9.103e^-7	0.008	UTR_3_PRIME CG32195 INTRON CG7341
2L	20300761	2L_20300761_SNP [dm3] 2L_20300761_SNP [dm6]	G	A	9.161e^-7	0.008	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6402580	2L_6402580_SNP [dm3] 2L_6402580_SNP [dm6]	G	A	9.270e^-7	0.008	INTRON CG42368	TF binding site mE1_TFBS_chinmo
3R	19191700	3R_19191700_SNP [dm3] 3R_23365978_SNP [dm6]	T	C	9.278e^-7	0.008	INTERGENIC
2R	13531439	2R_13531439_SNP [dm3] 2R_17643934_SNP [dm6]	C	A	9.362e^-7	0.008	INTERGENIC
2R	16285790	2R_16285790_SNP [dm3] 2R_20398285_SNP [dm6]	C	A	9.380e^-7	0.008	INTERGENIC
2L	3421779	2L_3421779_SNP [dm3] 2L_3421779_SNP [dm6]	C	G	9.640e^-7	0.009	INTRON pgant2
3R	23234476	3R_23234476_SNP [dm3] 3R_27408754_SNP [dm6]	T	C	9.920e^-7	0.009	INTRON side
2R	14474030	2R_14474030_SNP [dm3] 2R_18586525_SNP [dm6]	C	A	1.009e^-6	0.009	INTRON GEFmeso
3R	20735731	3R_20735731_SNP [dm3] 3R_24910009_SNP [dm6]	A	C	1.010e^-6	0.009	INTERGENIC
2L	4791211	2L_4791211_SNP [dm3] 2L_4791211_SNP [dm6]	G	T	1.017e^-6	0.009	INTRON CG15630
2R	9735542	2R_9735542_SNP [dm3] 2R_13848037_SNP [dm6]	G	A	1.030e^-6	0.009	SYNONYMOUS_CODING CG30484	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9735545	2R_9735545_SNP [dm3] 2R_13848040_SNP [dm6]	G	A	1.030e^-6	0.009	SYNONYMOUS_CODING CG30484	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9735580	2R_9735580_SNP [dm3] 2R_13848075_SNP [dm6]	G	A	1.030e^-6	0.009	NON_SYNONYMOUS_CODING CG30484	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9735605	2R_9735605_SNP [dm3] 2R_13848100_SNP [dm6]	G	A	1.030e^-6	0.009	SYNONYMOUS_CODING CG30484	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9735680	2R_9735680_SNP [dm3] 2R_13848175_SNP [dm6]	T	C	1.030e^-6	0.009	SYNONYMOUS_CODING CG30484	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1373733	2L_1373733_SNP [dm3] 2L_1373733_SNP [dm6]	T	G	1.031e^-6	0.009	INTERGENIC
2R	14963690	2R_14963690_SNP [dm3] 2R_19076185_SNP [dm6]	G	A	1.036e^-6	0.009	INTRON 5-HT1A
3R	6848932	3R_6848932_SNP [dm3] 3R_11023210_SNP [dm6]	G	T	1.037e^-6	0.009	INTRON CG34114
3R	6186845	3R_6186845_SNP [dm3] 3R_10361123_SNP [dm6]	A	T	1.060e^-6	0.009	UTR_3_PRIME jumu DOWNSTREAM Rfx	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	5877408	2R_5877408_SNP [dm3] 2R_9989903_SNP [dm6]	T	C	1.061e^-6	0.009	UPSTREAM TER94 & 1 other INTRON TER94	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
2R	12425761	2R_12425761_SNP [dm3] 2R_16538256_SNP [dm6]	G	T	1.097e^-6	0.009	INTERGENIC
2R	19824958	2R_19824958_SNP [dm3] 2R_23937435_SNP [dm6]	T	C	1.100e^-6	0.009	UTR_3_PRIME CG3735
2R	19825183	2R_19825183_SNP [dm3] 2R_23937660_SNP [dm6]	G	T	1.100e^-6	0.009	NON_SYNONYMOUS_CODING CG3735	TF binding site mE1_TFBS_sens
2R	17028760	2R_17028760_SNP [dm3] 2R_21141255_SNP [dm6]	G	A	1.148e^-6	0.009	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	16959958	2R_16959958_SNP [dm3] 2R_21072453_SNP [dm6]	G	A	1.181e^-6	0.01	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
2R	16959972	2R_16959972_SNP [dm3] 2R_21072467_SNP [dm6]	G	A	1.181e^-6	0.01	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
3R	14718893	3R_14718893_SNP [dm3] 3R_18893171_SNP [dm6]	C	T	1.181e^-6	0.01	INTERGENIC
X	10145971	X_10145971_SNP [dm3] X_10251938_SNP [dm6]	G	A	1.194e^-6	0.01	INTRON Hk
2R	14525630	2R_14525630_SNP [dm3] 2R_18638125_SNP [dm6]	G	A	1.223e^-6	0.01	NON_SYNONYMOUS_CODING CG30122	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
3L	8354466	3L_8354466_SNP [dm3] 3L_8361366_SNP [dm6]	G	A	1.237e^-6	0.01	UPSTREAM Idh INTERGENIC
2R	13531246	2R_13531246_SNP [dm3] 2R_17643741_SNP [dm6]	G	A	1.248e^-6	0.01	INTERGENIC
2R	13531250	2R_13531250_SNP [dm3] 2R_17643745_SNP [dm6]	T	G	1.248e^-6	0.01	INTERGENIC
2R	13531252	2R_13531252_SNP [dm3] 2R_17643747_SNP [dm6]	A	C	1.248e^-6	0.01	INTERGENIC
3R	22963469	3R_22963469_SNP [dm3] 3R_27137747_SNP [dm6]	T	C	1.317e^-6	0.01	INTRON CG6051
3R	22979897	3R_22979897_SNP [dm3] 3R_27154175_SNP [dm6]	C	A	1.317e^-6	0.01	INTRON Men-b
3R	22979910	3R_22979910_SNP [dm3] 3R_27154188_SNP [dm6]	T	G	1.317e^-6	0.01	INTRON Men-b
3R	22979911	3R_22979911_SNP [dm3] 3R_27154189_SNP [dm6]	C	A	1.317e^-6	0.01	INTRON Men-b
3R	22979923	3R_22979923_SNP [dm3] 3R_27154201_SNP [dm6]	T	C	1.317e^-6	0.01	INTRON Men-b
2R	13546844	2R_13546844_SNP [dm3] 2R_17659339_SNP [dm6]	A	T	1.333e^-6	0.01	INTRON CCHa1-R
3L	18197487	3L_18197487_SNP [dm3] 3L_18204387_SNP [dm6]	G	A	1.336e^-6	0.01	DOWNSTREAM CG7320 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18853055	2R_18853055_SNP [dm3] 2R_22965532_SNP [dm6]	C	T	1.364e^-6	0.01	INTERGENIC
2R	18853098	2R_18853098_SNP [dm3] 2R_22965575_SNP [dm6]	G	C	1.364e^-6	0.01	INTERGENIC
3L	14789718	3L_14789718_SNP [dm3] 3L_14796618_SNP [dm6]	C	T	1.387e^-6	0.01	SYNONYMOUS_CODING CG9425	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16304586	X_16304586_SNP [dm3] X_16410553_SNP [dm6]	A	G	1.401e^-6	0.011	SYNONYMOUS_CODING CG4301
2R	19824790	2R_19824790_SNP [dm3] 2R_23937267_SNP [dm6]	G	A	1.461e^-6	0.011	UTR_3_PRIME CG3735 DOWNSTREAM CG3735
2R	12111309	2R_12111309_SNP [dm3] 2R_16223804_SNP [dm6]	C	T	1.472e^-6	0.011	SYNONYMOUS_CODING CG15706 DOWNSTREAM CR43898	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12111312	2R_12111312_SNP [dm3] 2R_16223807_SNP [dm6]	A	G	1.472e^-6	0.011	SYNONYMOUS_CODING CG15706 DOWNSTREAM CR43898	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16373218	2R_16373218_SNP [dm3] 2R_20485713_SNP [dm6]	G	A	1.482e^-6	0.011	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	18573816	3R_18573816_SNP [dm3] 3R_22748094_SNP [dm6]	C	G	1.513e^-6	0.011	SYNONYMOUS_CODING CG31139 UPSTREAM CG17141 DOWNSTREAM rumi	TF binding site BDTNP1_TFBS_gt mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo
X	10448676	X_10448676_INS [dm3] X_10554643_INS [dm6]	G	GTG	1.519e^-6	0.011	INTRON spri
X	6251076	X_6251076_SNP [dm3] X_6357043_SNP [dm6]	C	T	1.543e^-6	0.011	INTRON kdn
3L	10100914	3L_10100914_SNP [dm3] 3L_10107814_SNP [dm6]	C	T	1.545e^-6	0.011	INTRON dpr6
3R	26017009	3R_26017009_SNP [dm3] 3R_30191287_SNP [dm6]	C	T	1.545e^-6	0.011	UPSTREAM CG9747 INTERGENIC
2R	11285407	2R_11285407_SNP [dm3] 2R_15397902_SNP [dm6]	A	G	1.554e^-6	0.011	INTERGENIC
2R	14963437	2R_14963437_SNP [dm3] 2R_19075932_SNP [dm6]	T	G	1.583e^-6	0.011	INTRON 5-HT1A
X	9441261	X_9441261_DEL [dm3] X_9547228_DEL [dm6]	TT	T	1.607e^-6	0.011	INTRON CG32700
X	11662094	X_11662094_SNP [dm3] X_11768061_SNP [dm6]	A	C	1.631e^-6	0.011	NON_SYNONYMOUS_CODING m	TF binding site mE1_TFBS_chinmo
2R	5685893	2R_5685893_INS [dm3] 2R_9798388_INS [dm6]	C	CC	1.631e^-6	0.011	DOWNSTREAM CG1698 INTRON CG1688
3L	19073783	3L_19073783_SNP [dm3] 3L_19080683_SNP [dm6]	C	T	1.632e^-6	0.011	INTRON Mkp3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	19074045	3L_19074045_SNP [dm3] 3L_19080945_SNP [dm6]	A	T	1.632e^-6	0.011	INTRON Mkp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	19074109	3L_19074109_SNP [dm3] 3L_19081009_SNP [dm6]	T	A	1.632e^-6	0.011	INTRON Mkp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14789730	3L_14789730_SNP [dm3] 3L_14796630_SNP [dm6]	T	C	1.709e^-6	0.012	SYNONYMOUS_CODING CG9425	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9986458	X_9986458_SNP [dm3] X_10092425_SNP [dm6]	G	C	1.733e^-6	0.012	INTRON RhoU	TF binding site BDTNP1_TFBS_dl
X	9986460	X_9986460_SNP [dm3] X_10092427_SNP [dm6]	C	T	1.733e^-6	0.012	INTRON RhoU	TF binding site BDTNP1_TFBS_dl
2R	19327787	2R_19327787_SNP [dm3] 2R_23440264_SNP [dm6]	C	T	1.739e^-6	0.012	SYNONYMOUS_CODING Or59a
3R	22712314	3R_22712314_SNP [dm3] 3R_26886592_SNP [dm6]	C	T	1.741e^-6	0.012	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6793235	3R_6793235_SNP [dm3] 3R_10967513_SNP [dm6]	A	T	1.754e^-6	0.012	INTERGENIC
3R	23422560	3R_23422560_SNP [dm3] 3R_27596838_SNP [dm6]	T	G	1.768e^-6	0.012	UPSTREAM CG5639 DOWNSTREAM dsd INTERGENIC
3L	17780815	3L_17780815_SNP [dm3] 3L_17787715_SNP [dm6]	A	G	1.886e^-6	0.013	INTERGENIC
2R	7954552	2R_7954552_SNP [dm3] 2R_12067047_SNP [dm6]	A	T	1.908e^-6	0.013	INTRON CG8888	TF binding site mE1_TFBS_bab1
3R	13105028	3R_13105028_SNP [dm3] 3R_17279306_SNP [dm6]	A	G	1.912e^-6	0.013	INTERGENIC
2R	5685260	2R_5685260_SNP [dm3] 2R_9797755_SNP [dm6]	T	C	1.913e^-6	0.013	SYNONYMOUS_CODING CG1698 INTRON CG1688	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	1682286	3L_1682286_SNP [dm3] 3L_1682286_SNP [dm6]	C	A	1.927e^-6	0.013	INTRON CG7991
2R	7954551	2R_7954551_SNP [dm3] 2R_12067046_SNP [dm6]	A	G	1.949e^-6	0.013	INTRON CG8888	TF binding site mE1_TFBS_bab1
3R	1245778	3R_1245778_SNP [dm3] 3R_5420056_SNP [dm6]	A	C	1.960e^-6	0.013	INTRON CG14669
2R	18050765	2R_18050765_SNP [dm3] 2R_22163260_SNP [dm6]	C	T	1.967e^-6	0.013	NON_SYNONYMOUS_CODING a DOWNSTREAM CG34206	TF binding site mE1_TFBS_cad
2R	16849648	2R_16849648_SNP [dm3] 2R_20962143_SNP [dm6]	C	A	1.972e^-6	0.013	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14154053	2R_14154053_SNP [dm3] 2R_18266548_SNP [dm6]	A	C	1.976e^-6	0.013	INTERGENIC
2R	17803670	2R_17803670_DEL [dm3] 2R_21916165_DEL [dm6]	TGAGGGAA	T	1.993e^-6	0.013	INTRON Fili
2L	19182796	2L_19182796_SNP [dm3] 2L_19182796_SNP [dm6]	A	G	2.005e^-6	0.013	UTR_5_PRIME CG42688 UPSTREAM CG42688 DOWNSTREAM CR17567
X	9989016	X_9989016_INS [dm3] X_10094983_INS [dm6]	G	GG	2.022e^-6	0.013	INTRON RhoU
X	5954169	X_5954169_SNP [dm3] X_6060136_SNP [dm6]	T	C	2.025e^-6	0.013	NON_SYNONYMOUS_CODING CG5921	TF binding site mE1_TFBS_chinmo
2R	9971862	2R_9971862_SNP [dm3] 2R_14084357_SNP [dm6]	A	T	2.027e^-6	0.013	INTRON Prosap	TF binding site mE1_TFBS_bab1
X	21345417	X_21345417_SNP [dm3] X_21474390_SNP [dm6]	A	T	2.034e^-6	0.013	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9322294	3R_9322294_DEL [dm3] 3R_13496572_DEL [dm6]	CTC	C	2.116e^-6	0.014	INTERGENIC
2L	17884482	2L_17884482_SNP [dm3] 2L_17884482_SNP [dm6]	G	A	2.127e^-6	0.014	INTERGENIC
X	4794149	X_4794149_SNP [dm3] X_4900116_SNP [dm6]	C	A	2.159e^-6	0.014	INTRON CG42594
3R	13202212	3R_13202212_SNP [dm3] 3R_17376490_SNP [dm6]	A	G	2.223e^-6	0.014	SYNONYMOUS_CODING Brf
3R	1156636	3R_1156636_SNP [dm3] 3R_5330914_SNP [dm6]	A	G	2.230e^-6	0.014	INTRON mtd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	23335935	3R_23335935_SNP [dm3] 3R_27510213_SNP [dm6]	A	G	2.238e^-6	0.014	INTERGENIC
3L	14666567	3L_14666567_SNP [dm3] 3L_14673467_SNP [dm6]	A	T	2.256e^-6	0.014	UPSTREAM tRNA:M3:70Fb DOWNSTREAM tRNA:M3:70Fa INTRON ome	TF binding site mE1_TFBS_HSA
3L	21787219	3L_21787219_SNP [dm3] 3L_21794119_SNP [dm6]	C	T	2.261e^-6	0.014	INTERGENIC
2R	13854439	2R_13854439_SNP [dm3] 2R_17966934_SNP [dm6]	T	A	2.293e^-6	0.014	INTERGENIC
X	4252280	X_4252280_DEL [dm3] X_4358247_DEL [dm6]	TAT	T	2.346e^-6	0.015	INTRON norpA
3R	21292259	3R_21292259_DEL [dm3] 3R_25466537_DEL [dm6]	ACACAAGCGCACA...	A	2.390e^-6	0.015	INTRON Fur1
3R	24872380	3R_24872380_SNP [dm3] 3R_29046658_SNP [dm6]	A	G	2.416e^-6	0.015	UTR_3_PRIME Pkc98E
3R	10577736	3R_10577736_SNP [dm3] 3R_14752014_SNP [dm6]	T	A	2.427e^-6	0.015	SYNONYMOUS_CODING CG7362 UPSTREAM smp-30 INTRON jvl
2R	17907371	2R_17907371_SNP [dm3] 2R_22019866_SNP [dm6]	T	A	2.432e^-6	0.015	INTRON CG34370
2R	9140045	2R_9140045_SNP [dm3] 2R_13252540_SNP [dm6]	C	T	2.449e^-6	0.015	SYNONYMOUS_CODING CG4714 UPSTREAM CG4712	TF binding site mE1_TFBS_cad
3R	23161750	3R_23161750_SNP [dm3] 3R_27336028_SNP [dm6]	T	A	2.449e^-6	0.015	INTERGENIC
3R	23161804	3R_23161804_SNP [dm3] 3R_27336082_SNP [dm6]	G	C	2.449e^-6	0.015	INTERGENIC
X	14257342	X_14257342_SNP [dm3] X_14363309_SNP [dm6]	G	A	2.449e^-6	0.015	INTRON dpr8
X	8898111	X_8898111_SNP [dm3] X_9004078_SNP [dm6]	T	C	2.449e^-6	0.015	INTRON rdgA & 1 other
X	17042568	X_17042568_SNP [dm3] X_17148535_SNP [dm6]	G	A	2.459e^-6	0.015	UPSTREAM CG5010 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3943729	3L_3943729_SNP [dm3] 3L_3943729_SNP [dm6]	T	C	2.461e^-6	0.015	SYNONYMOUS_CODING CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	16387608	3L_16387608_SNP [dm3] 3L_16394508_SNP [dm6]	G	C	2.466e^-6	0.015	UPSTREAM Grp INTRON CG44836	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23424379	3R_23424379_SNP [dm3] 3R_27598657_SNP [dm6]	G	A	2.484e^-6	0.015	UTR_3_PRIME dsd
3R	22963355	3R_22963355_SNP [dm3] 3R_27137633_SNP [dm6]	C	A	2.512e^-6	0.015	INTRON CG6051
3L	3784387	3L_3784387_SNP [dm3] 3L_3784387_SNP [dm6]	C	G	2.555e^-6	0.015	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	9800850	X_9800850_SNP [dm3] X_9906817_SNP [dm6]	C	T	2.561e^-6	0.015	INTERGENIC
2R	11278216	2R_11278216_SNP [dm3] 2R_15390711_SNP [dm6]	T	C	2.663e^-6	0.016	INTERGENIC
2R	11278234	2R_11278234_SNP [dm3] 2R_15390729_SNP [dm6]	C	G	2.663e^-6	0.016	INTERGENIC
2L	11154701	2L_11154701_SNP [dm3] 2L_11154701_SNP [dm6]	T	A	2.696e^-6	0.016	INTRON CG6287
2L	11154705	2L_11154705_SNP [dm3] 2L_11154705_SNP [dm6]	A	G	2.696e^-6	0.016	INTRON CG6287
3R	26063274	3R_26063274_SNP [dm3] 3R_30237552_SNP [dm6]	T	C	2.696e^-6	0.016	SYNONYMOUS_CODING CG43448	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16317437	2R_16317437_SNP [dm3] 2R_20429932_SNP [dm6]	T	C	2.713e^-6	0.016	INTRON CG12484
2L	8182913	2L_8182913_DEL [dm3] 2L_8182913_DEL [dm6]	GTCTTA	T	2.718e^-6	0.016	INTRON Piezo
3L	15683051	3L_15683051_SNP [dm3] 3L_15689951_SNP [dm6]	G	T	2.754e^-6	0.016	INTRON CG34451	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	18932387	2R_18932387_SNP [dm3] 2R_23044864_SNP [dm6]	T	C	2.761e^-6	0.016	INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7734287	3R_7734287_SNP [dm3] 3R_11908565_SNP [dm6]	G	T	2.813e^-6	0.016	INTRON Cad87A
3L	2166756	3L_2166756_SNP [dm3] 3L_2166756_SNP [dm6]	A	G	2.815e^-6	0.016	DOWNSTREAM CG15879 INTERGENIC
3R	26002153	3R_26002153_SNP [dm3] 3R_30176431_SNP [dm6]	C	T	2.820e^-6	0.016	UTR_3_PRIME CG1983
3L	18904789	3L_18904789_SNP [dm3] 3L_18911689_SNP [dm6]	A	T	2.821e^-6	0.016	UPSTREAM Ir75d INTRON CG14077
3R	17957127	3R_17957127_SNP [dm3] 3R_22131405_SNP [dm6]	G	A	2.907e^-6	0.016	INTRON CG42390
2R	5219416	2R_5219416_SNP [dm3] 2R_9331911_SNP [dm6]	C	T	2.955e^-6	0.017	INTRON CG13954 & 1 other
3L	980956	3L_980956_SNP [dm3] 3L_980956_SNP [dm6]	C	T	2.960e^-6	0.017	SYNONYMOUS_CODING Glut1 UTR_3_PRIME Glut1 DOWNSTREAM Glut1	TF binding site mE1_TFBS_chinmo
3L	18912995	3L_18912995_SNP [dm3] 3L_18919895_SNP [dm6]	G	T	2.974e^-6	0.017	NON_SYNONYMOUS_CODING CG18223 UTR_3_PRIME CG18223 DOWNSTREAM CG6839 & 1 other
3R	23147046	3R_23147046_SNP [dm3] 3R_27321324_SNP [dm6]	T	A	2.996e^-6	0.017	INTRON CG3339
3R	24453655	3R_24453655_SNP [dm3] 3R_28627933_SNP [dm6]	T	C	3.032e^-6	0.017	INTRON CG10011
3R	21539770	3R_21539770_SNP [dm3] 3R_25714048_SNP [dm6]	C	A	3.035e^-6	0.017	INTRON LpR2
2L	3573329	2L_3573329_DEL [dm3] 2L_3573329_DEL [dm6]	GTGGCTCAGGAGGGGTGCTC...	G	3.043e^-6	0.017	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3L	20151078	3L_20151078_SNP [dm3] 3L_20157978_SNP [dm6]	A	C	3.054e^-6	0.017	INTRON CG42674
3R	18517444	3R_18517444_SNP [dm3] 3R_22691722_SNP [dm6]	C	T	3.096e^-6	0.017	NON_SYNONYMOUS_CODING Nup133 SPLICE_SITE_REGION Nup133	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	18119472	2L_18119472_SNP [dm3] 2L_18119472_SNP [dm6]	A	T	3.102e^-6	0.017	UPSTREAM CG5758 INTERGENIC
3R	23072277	3R_23072277_SNP [dm3] 3R_27246555_SNP [dm6]	A	G	3.144e^-6	0.017	UTR_3_PRIME CG5984	TF binding site mE1_TFBS_chinmo
3L	19138205	3L_19138205_SNP [dm3] 3L_19145105_SNP [dm6]	C	A	3.146e^-6	0.017	SYNONYMOUS_CODING fz2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16528855	2L_16528855_DEL [dm3] 2L_16528855_DEL [dm6]	AG	A	3.168e^-6	0.017	UPSTREAM mir-4943 INTRON CG5953 EXON snoRNA:Me28S-C1237
3L	1264657	3L_1264657_SNP [dm3] 3L_1264657_SNP [dm6]	A	T	3.171e^-6	0.017	INTRON CG9134
3R	20830866	3R_20830866_SNP [dm3] 3R_25005144_SNP [dm6]	T	G	3.186e^-6	0.017	INTRON tnc
3R	22962961	3R_22962961_SNP [dm3] 3R_27137239_SNP [dm6]	G	A	3.235e^-6	0.017	INTRON CG6051
2R	15016333	2R_15016333_SNP [dm3] 2R_19128828_SNP [dm6]	T	G	3.282e^-6	0.018	UPSTREAM botv INTRON CG15117
3R	20662028	3R_20662028_SNP [dm3] 3R_24836306_SNP [dm6]	A	G	3.282e^-6	0.018	UPSTREAM sosie DOWNSTREAM CR45216 INTRON sosie
X	581917	X_581917_SNP [dm3] X_687884_SNP [dm6]	C	G	3.406e^-6	0.018	INTRON sdk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16849601	2R_16849601_SNP [dm3] 2R_20962096_SNP [dm6]	G	A	3.413e^-6	0.018	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19317011	3R_19317011_SNP [dm3] 3R_23491289_SNP [dm6]	T	A	3.429e^-6	0.018	INTERGENIC
3L	16291082	3L_16291082_SNP [dm3] 3L_16297982_SNP [dm6]	C	T	3.448e^-6	0.018	INTERGENIC
X	12304472	X_12304472_SNP [dm3] X_12410439_SNP [dm6]	G	C	3.470e^-6	0.018	DOWNSTREAM CG2574 & 1 other INTERGENIC
3L	15521703	3L_15521703_SNP [dm3] 3L_15528603_SNP [dm6]	G	A	3.475e^-6	0.018	SPLICE_SITE_REGION obst-H SYNONYMOUS_CODING obst-H UPSTREAM CG42728
3R	17957035	3R_17957035_SNP [dm3] 3R_22131313_SNP [dm6]	A	G	3.499e^-6	0.018	SYNONYMOUS_CODING CG42390
2R	17034800	2R_17034800_SNP [dm3] 2R_21147295_SNP [dm6]	C	T	3.537e^-6	0.019	SYNONYMOUS_CODING Hmg-2 DOWNSTREAM CG15657 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23036872	3R_23036872_SNP [dm3] 3R_27211150_SNP [dm6]	A	G	3.538e^-6	0.019	INTERGENIC
2R	7678655	2R_7678655_SNP [dm3] 2R_11791150_SNP [dm6]	T	A	3.582e^-6	0.019	INTRON ths	TF binding site BDTNP1_TFBS_dl
2R	17451255	2R_17451255_SNP [dm3] 2R_21563750_SNP [dm6]	A	T	3.589e^-6	0.019	INTRON CG10440
2R	17451286	2R_17451286_SNP [dm3] 2R_21563781_SNP [dm6]	C	T	3.589e^-6	0.019	INTRON CG10440
3L	6722812	3L_6722812_INS [dm3] 3L_6729712_INS [dm6]	T	TT	3.611e^-6	0.019	UTR_3_PRIME dikar DOWNSTREAM dikar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18179934	2R_18179934_SNP [dm3] 2R_22292429_SNP [dm6]	A	G	3.615e^-6	0.019	UPSTREAM CG5819 DOWNSTREAM CR43422 INTERGENIC
3L	20105004	3L_20105004_SNP [dm3] 3L_20111904_SNP [dm6]	G	C	3.711e^-6	0.019	UPSTREAM Ir76b DOWNSTREAM CG14187 INTERGENIC
3L	20117364	3L_20117364_SNP [dm3] 3L_20124264_SNP [dm6]	A	C	3.711e^-6	0.019	DOWNSTREAM CG7365 INTERGENIC
3L	20117766	3L_20117766_SNP [dm3] 3L_20124666_SNP [dm6]	G	A	3.711e^-6	0.019	SYNONYMOUS_CODING CG7365
3L	20119686	3L_20119686_SNP [dm3] 3L_20126586_SNP [dm6]	T	A	3.711e^-6	0.019	UPSTREAM CG7365 INTRON CG7365
3R	25298415	3R_25298415_INS [dm3] 3R_29472693_INS [dm6]	CC	TTTT	3.774e^-6	0.019	INTRON Ptp99A
3R	24460419	3R_24460419_SNP [dm3] 3R_28634697_SNP [dm6]	C	A	3.891e^-6	0.02	UTR_5_PRIME CG10011	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24460692	3R_24460692_SNP [dm3] 3R_28634970_SNP [dm6]	G	A	3.891e^-6	0.02	UTR_5_PRIME CG10011	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14694819	2R_14694819_INS [dm3] 2R_18807314_INS [dm6]	A	AA	3.908e^-6	0.02	DOWNSTREAM CR44468 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	19007092	2R_19007092_SNP [dm3] 2R_23119569_SNP [dm6]	G	T	3.912e^-6	0.02	INTERGENIC
X	1003577	X_1003577_SNP [dm3] X_1109544_SNP [dm6]	G	A	3.935e^-6	0.02	INTRON CG3655
3L	6722747	3L_6722747_SNP [dm3] 3L_6729647_SNP [dm6]	C	A	3.943e^-6	0.02	UTR_3_PRIME dikar DOWNSTREAM CR45417 & 1 other	TF binding site mE1_TFBS_HSA
3L	14059666	3L_14059666_SNP [dm3] 3L_14066566_SNP [dm6]	T	G	3.998e^-6	0.02	SYNONYMOUS_CODING CG32138	TF binding site mE1_TFBS_cad
2R	17450652	2R_17450652_SNP [dm3] 2R_21563147_SNP [dm6]	T	A	4.050e^-6	0.02	INTRON CG10440
2R	17450656	2R_17450656_INS [dm3] 2R_21563151_INS [dm6]	A	AGCATTCTCA	4.050e^-6	0.02	INTRON CG10440
3R	6378396	3R_6378396_SNP [dm3] 3R_10552674_SNP [dm6]	G	A	4.068e^-6	0.02	INTRON hth
3R	6678823	3R_6678823_SNP [dm3] 3R_10853101_SNP [dm6]	G	T	4.075e^-6	0.02	SYNONYMOUS_CODING CG4565 DOWNSTREAM CG6567	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	6679787	3R_6679787_SNP [dm3] 3R_10854065_SNP [dm6]	G	A	4.075e^-6	0.02	SYNONYMOUS_CODING CG6567 UPSTREAM CG4511 DOWNSTREAM CG4565	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	6682323	3R_6682323_SNP [dm3] 3R_10856601_SNP [dm6]	G	A	4.075e^-6	0.02	UPSTREAM CG4570 DOWNSTREAM CG4511 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6684439	3R_6684439_SNP [dm3] 3R_10858717_SNP [dm6]	A	T	4.075e^-6	0.02	SYNONYMOUS_CODING CG14694 DOWNSTREAM CG4570	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	4383533	X_4383533_SNP [dm3] X_4489500_SNP [dm6]	A	C	4.106e^-6	0.02	INTRON CR32773	TF binding site mE1_TFBS_Kr
3R	22962962	3R_22962962_SNP [dm3] 3R_27137240_SNP [dm6]	G	A	4.139e^-6	0.02	INTRON CG6051
3L	5787277	3L_5787277_SNP [dm3] 3L_5794177_SNP [dm6]	C	T	4.160e^-6	0.02	START_GAINED Bre1 UTR_5_PRIME Bre1 DOWNSTREAM Tektin-C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	8354448	3L_8354448_SNP [dm3] 3L_8361348_SNP [dm6]	A	C	4.182e^-6	0.02	UPSTREAM Idh INTERGENIC
2R	17029396	2R_17029396_SNP [dm3] 2R_21141891_SNP [dm6]	T	A	4.212e^-6	0.02	START_GAINED Magi UTR_5_PRIME Magi UPSTREAM CG9406	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3R	17957072	3R_17957072_SNP [dm3] 3R_22131350_SNP [dm6]	A	G	4.213e^-6	0.02	SPLICE_SITE_REGION CG42390 INTRON CG42390
2R	16609943	2R_16609943_SNP [dm3] 2R_20722438_SNP [dm6]	T	C	4.278e^-6	0.021	UPSTREAM CR44660 INTRON dpr
3R	23566069	3R_23566069_SNP [dm3] 3R_27740347_SNP [dm6]	T	A	4.286e^-6	0.021	INTRON Ets98B
3R	17770959	3R_17770959_SNP [dm3] 3R_21945237_SNP [dm6]	G	A	4.342e^-6	0.021	INTERGENIC
3R	21006097	3R_21006097_SNP [dm3] 3R_25180375_SNP [dm6]	G	A	4.375e^-6	0.021	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17635078	2R_17635078_SNP [dm3] 2R_21747573_SNP [dm6]	A	T	4.410e^-6	0.021	INTERGENIC
3L	18196944	3L_18196944_SNP [dm3] 3L_18203844_SNP [dm6]	T	C	4.410e^-6	0.021	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	7255252	3L_7255252_SNP [dm3] 3L_7262152_SNP [dm6]	A	G	4.410e^-6	0.021	INTRON CG14830
3R	22298953	3R_22298953_SNP [dm3] 3R_26473231_SNP [dm6]	G	T	4.410e^-6	0.021	SYNONYMOUS_CODING plum	TF binding site mE1_TFBS_chinmo
3L	10378611	3L_10378611_SNP [dm3] 3L_10385511_SNP [dm6]	T	A	4.424e^-6	0.021	UPSTREAM CR45245 INTERGENIC
3L	4860304	3L_4860304_SNP [dm3] 3L_4860304_SNP [dm6]	C	G	4.435e^-6	0.021	UTR_5_PRIME CG32235 UPSTREAM CG17150	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	17816119	3L_17816119_SNP [dm3] 3L_17823019_SNP [dm6]	G	C	4.454e^-6	0.021	UPSTREAM Grd & 1 other INTERGENIC
2L	4794074	2L_4794074_SNP [dm3] 2L_4794074_SNP [dm6]	C	T	4.516e^-6	0.021	UPSTREAM CG3294 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4355520	2L_4355520_SNP [dm3] 2L_4355520_SNP [dm6]	A	T	4.517e^-6	0.021	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7343165	2L_7343165_SNP [dm3] 2L_7343165_SNP [dm6]	G	A	4.527e^-6	0.021	INTRON Wnt6
X	3742129	X_3742129_SNP [dm3] X_3848096_SNP [dm6]	T	A	4.571e^-6	0.021	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27098490	3R_27098490_SNP [dm3] 3R_31272768_SNP [dm6]	T	A	4.579e^-6	0.021	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9044393	X_9044393_SNP [dm3] X_9150360_SNP [dm6]	T	A	4.598e^-6	0.021	NON_SYNONYMOUS_CODING dalao	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17451191	2R_17451191_SNP [dm3] 2R_21563686_SNP [dm6]	T	C	4.612e^-6	0.021	INTRON CG10440
X	16720946	X_16720946_SNP [dm3] X_16826913_SNP [dm6]	C	A	4.624e^-6	0.021	UTR_3_PRIME CG13004 DOWNSTREAM CG13004 & 1 other
2L	1337558	2L_1337558_DEL [dm3] 2L_1337558_DEL [dm6]	CCTGTTTGGACACCAC...	C	4.646e^-6	0.021	INTERGENIC
3R	15068436	3R_15068436_SNP [dm3] 3R_19242714_SNP [dm6]	C	T	4.648e^-6	0.021	SPLICE_SITE_REGION unc79 INTRON unc79	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	20135280	3L_20135280_SNP [dm3] 3L_20142180_SNP [dm6]	G	A	4.669e^-6	0.021	INTERGENIC
2R	18179918	2R_18179918_DEL [dm3] 2R_22292413_DEL [dm6]	AG	A	4.737e^-6	0.022	UPSTREAM CG5819 DOWNSTREAM CR43422 INTERGENIC
2R	17907337	2R_17907337_SNP [dm3] 2R_22019832_SNP [dm6]	G	T	4.780e^-6	0.022	INTRON CG34370
3R	19316942	3R_19316942_INS [dm3] 3R_23491220_INS [dm6]	A	AA	4.798e^-6	0.022	INTERGENIC
3R	4242862	3R_4242862_SNP [dm3] 3R_8417140_SNP [dm6]	C	T	4.845e^-6	0.022	INTRON CG45263
3R	22406814	3R_22406814_SNP [dm3] 3R_26581092_SNP [dm6]	C	T	4.857e^-6	0.022	UTR_3_PRIME scrib INTRON scrib	TF binding site mE1_TFBS_cad
3L	1092192	3L_1092192_SNP [dm3] 3L_1092192_SNP [dm6]	A	C	4.900e^-6	0.022	INTRON bab1	regulatory region REDfly_CRMs
3R	21685872	3R_21685872_SNP [dm3] 3R_25860150_SNP [dm6]	G	T	4.942e^-6	0.022	INTRON CG5890
3L	1395146	3L_1395146_SNP [dm3] 3L_1395146_SNP [dm6]	A	G	4.944e^-6	0.022	INTRON Ptp61F
2R	5877423	2R_5877423_SNP [dm3] 2R_9989918_SNP [dm6]	T	G	4.985e^-6	0.022	UPSTREAM TER94 & 1 other INTRON TER94	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_kn
2L	7230638	2L_7230638_SNP [dm3] 2L_7230638_SNP [dm6]	C	A	4.998e^-6	0.022	INTRON Ndae1
2L	18258954	2L_18258954_SNP [dm3] 2L_18258954_SNP [dm6]	G	T	5.009e^-6	0.022	UPSTREAM CG31788 INTRON CG42750
3R	17773135	3R_17773135_SNP [dm3] 3R_21947413_SNP [dm6]	T	C	5.088e^-6	0.023	INTERGENIC
2R	13502864	2R_13502864_SNP [dm3] 2R_17615359_SNP [dm6]	T	A	5.133e^-6	0.023	INTRON CG10936	TF binding site mE1_TFBS_inv
2R	13503298	2R_13503298_SNP [dm3] 2R_17615793_SNP [dm6]	G	T	5.133e^-6	0.023	UPSTREAM snoRNA:Or-aca4 DOWNSTREAM CG44403 INTRON CG10936
3R	2747706	3R_2747706_SNP [dm3] 3R_6921984_SNP [dm6]	T	C	5.133e^-6	0.023	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19022844	3R_19022844_SNP [dm3] 3R_23197122_SNP [dm6]	C	T	5.184e^-6	0.023	INTRON cnc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8176827	3R_8176827_SNP [dm3] 3R_12351105_SNP [dm6]	T	A	5.208e^-6	0.023	UPSTREAM CG10038 INTRON CG10041	TF binding site BDTNP1_TFBS_dl
2R	9473861	2R_9473861_SNP [dm3] 2R_13586356_SNP [dm6]	G	C	5.210e^-6	0.023	INTRON CG6191 & 1 other	TF binding site mE1_TFBS_zfh1
3L	9997681	3L_9997681_SNP [dm3] 3L_10004581_SNP [dm6]	C	T	5.217e^-6	0.023	INTRON dpr6
X	14677489	X_14677489_SNP [dm3] X_14783456_SNP [dm6]	C	G	5.231e^-6	0.023	INTRON Ag5r2
2L	9838277	2L_9838277_SNP [dm3] 2L_9838277_SNP [dm6]	G	C	5.315e^-6	0.023	INTRON nAChRalpha6
3L	21072440	3L_21072440_SNP [dm3] 3L_21079340_SNP [dm6]	A	T	5.381e^-6	0.023	INTRON ko	TF binding site mE1_TFBS_cad
3R	6180356	3R_6180356_SNP [dm3] 3R_10354634_SNP [dm6]	A	G	5.415e^-6	0.023	INTRON jumu	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	21853996	X_21853996_SNP [dm3] X_22452160_SNP [dm6]	T	G	5.415e^-6	0.023	UTR_3_PRIME wap DOWNSTREAM tilB
3L	1263692	3L_1263692_SNP [dm3] 3L_1263692_SNP [dm6]	C	A	5.436e^-6	0.023	INTRON CG9134
3L	14059855	3L_14059855_SNP [dm3] 3L_14066755_SNP [dm6]	G	A	5.527e^-6	0.024	SYNONYMOUS_CODING CG32138	TF binding site mE1_TFBS_cad
3R	25136466	3R_25136466_SNP [dm3] 3R_29310744_SNP [dm6]	T	G	5.559e^-6	0.024	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	10985962	2L_10985962_SNP [dm3] 2L_10985962_SNP [dm6]	G	A	5.597e^-6	0.024	NON_SYNONYMOUS_CODING piwi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	13131223	3L_13131223_SNP [dm3] 3L_13138123_SNP [dm6]	A	T	5.689e^-6	0.024	INTERGENIC
X	6741182	X_6741182_SNP [dm3] X_6847149_SNP [dm6]	C	G	5.692e^-6	0.024	DOWNSTREAM Cht11 INTRON CG4557
3R	23426103	3R_23426103_SNP [dm3] 3R_27600381_SNP [dm6]	A	G	5.713e^-6	0.024	SYNONYMOUS_CODING dsd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2682906	3L_2682906_SNP [dm3] 3L_2682906_SNP [dm6]	G	C	5.714e^-6	0.024	INTRON Fife
3L	13127868	3L_13127868_SNP [dm3] 3L_13134768_SNP [dm6]	G	A	5.820e^-6	0.025	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	1505594	2L_1505594_SNP [dm3] 2L_1505594_SNP [dm6]	G	A	5.834e^-6	0.025	INTERGENIC
2L	18258685	2L_18258685_SNP [dm3] 2L_18258685_SNP [dm6]	A	T	5.940e^-6	0.025	UPSTREAM CG31788 INTRON CG42750
3R	17773090	3R_17773090_DEL [dm3] 3R_21947368_DEL [dm6]	CTCTTCTAGTTGCCCC...	C	6.004e^-6	0.025	INTERGENIC
3R	22890553	3R_22890553_SNP [dm3] 3R_27064831_SNP [dm6]	G	A	6.135e^-6	0.026	UPSTREAM Nep5 & 1 other DOWNSTREAM spz INTERGENIC
3L	19138184	3L_19138184_SNP [dm3] 3L_19145084_SNP [dm6]	A	G	6.154e^-6	0.026	SYNONYMOUS_CODING fz2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16774653	3L_16774653_SNP [dm3] 3L_16781553_SNP [dm6]	C	T	6.192e^-6	0.026	SYNONYMOUS_CODING CG9705	TF binding site BDTNP1_TFBS_dl
X	9441074	X_9441074_SNP [dm3] X_9547041_SNP [dm6]	A	G	6.198e^-6	0.026	INTRON CG32700
X	15462692	X_15462692_INS [dm3] X_15568659_INS [dm6]	A	AGA	6.208e^-6	0.026	UPSTREAM CG7860 INTERGENIC
X	16319903	X_16319903_SNP [dm3] X_16425870_SNP [dm6]	G	A	6.208e^-6	0.026	INTRON hang	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	9019169	2L_9019169_SNP [dm3] 2L_9019169_SNP [dm6]	C	A	6.232e^-6	0.026	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18258966	2L_18258966_SNP [dm3] 2L_18258966_SNP [dm6]	C	A	6.269e^-6	0.026	UPSTREAM CG31788 INTRON CG42750
3R	14237782	3R_14237782_INS [dm3] 3R_18412060_INS [dm6]	G	GCGAA	6.277e^-6	0.026	UPSTREAM CG10864 INTRON CG31122	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2R	13503259	2R_13503259_SNP [dm3] 2R_17615754_SNP [dm6]	C	T	6.288e^-6	0.026	DOWNSTREAM CG44403 INTRON CG10936
3R	9761382	3R_9761382_INS [dm3] 3R_13935660_INS [dm6]	T	TATTT	6.296e^-6	0.026	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	4047890	3L_4047890_SNP [dm3] 3L_4047890_SNP [dm6]	C	T	6.327e^-6	0.026	UPSTREAM Dpy-30L2 INTRON CG1136
2L	15468321	2L_15468321_SNP [dm3] 2L_15468321_SNP [dm6]	G	T	6.427e^-6	0.026	DOWNSTREAM CR45353 INTERGENIC
2R	17150752	2R_17150752_SNP [dm3] 2R_21263247_SNP [dm6]	A	T	6.454e^-6	0.026	INTRON Rgk3
3L	826239	3L_826239_SNP [dm3] 3L_826239_SNP [dm6]	A	T	6.467e^-6	0.026	DOWNSTREAM CG13900 & 2 others INTERGENIC
2R	14693413	2R_14693413_SNP [dm3] 2R_18805908_SNP [dm6]	G	T	6.491e^-6	0.026	INTRON CR44468 EXON CR44468	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	16802779	3R_16802779_INS [dm3] 3R_20977057_INS [dm6]	C	CACAAC	6.515e^-6	0.026	DOWNSTREAM Atpalpha INTERGENIC
3R	10609132	3R_10609132_SNP [dm3] 3R_14783410_SNP [dm6]	C	G	6.557e^-6	0.026	INTRON jvl
2R	14556188	2R_14556188_DEL [dm3] 2R_18668683_DEL [dm6]	ACA	A	6.592e^-6	0.027	INTRON edl
3L	7598757	3L_7598757_SNP [dm3] 3L_7605657_SNP [dm6]	C	T	6.612e^-6	0.027	INTRON CG33275	TF binding site mE1_TFBS_HSA
3L	7598776	3L_7598776_SNP [dm3] 3L_7605676_SNP [dm6]	A	C	6.612e^-6	0.027	INTRON CG33275	TF binding site mE1_TFBS_HSA
2R	18604013	2R_18604013_SNP [dm3] 2R_22716508_SNP [dm6]	C	A	6.653e^-6	0.027	SYNONYMOUS_CODING CG30268 DOWNSTREAM jbug	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	18908482	2R_18908482_DEL [dm3] 2R_23020959_DEL [dm6]	ACCACC	A	6.696e^-6	0.027	INTRON twi & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14997370	3L_14997370_SNP [dm3] 3L_15004270_SNP [dm6]	G	A	6.733e^-6	0.027	SYNONYMOUS_CODING Reck	TF binding site mE1_TFBS_cad
3R	22929638	3R_22929638_SNP [dm3] 3R_27103916_SNP [dm6]	A	G	6.783e^-6	0.027	SYNONYMOUS_CODING CG6074 DOWNSTREAM CG17189
3R	15392163	3R_15392163_SNP [dm3] 3R_19566441_SNP [dm6]	C	T	6.791e^-6	0.027	INTRON Dys
2L	11207414	2L_11207414_SNP [dm3] 2L_11207414_SNP [dm6]	C	T	6.806e^-6	0.027	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	826252	3L_826252_SNP [dm3] 3L_826252_SNP [dm6]	G	T	6.874e^-6	0.027	DOWNSTREAM CG13900 & 2 others INTERGENIC
3L	826254	3L_826254_MNP [dm3] 3L_826254_MNP [dm6]	TTT	CAC	6.874e^-6	0.027	DOWNSTREAM CG13900 & 2 others INTERGENIC
3L	826259	3L_826259_SNP [dm3] 3L_826259_SNP [dm6]	A	T	6.874e^-6	0.027	DOWNSTREAM CG13900 & 2 others INTERGENIC
3L	826263	3L_826263_SNP [dm3] 3L_826263_SNP [dm6]	T	C	6.874e^-6	0.027	DOWNSTREAM CG13900 & 2 others INTERGENIC
3L	826267	3L_826267_DEL [dm3] 3L_826267_DEL [dm6]	TCTTT	T	6.874e^-6	0.027	DOWNSTREAM CG13900 & 2 others INTERGENIC
2R	18853084	2R_18853084_SNP [dm3] 2R_22965561_SNP [dm6]	C	T	6.918e^-6	0.027	INTERGENIC
2R	18853091	2R_18853091_SNP [dm3] 2R_22965568_SNP [dm6]	G	T	6.918e^-6	0.027	INTERGENIC
2R	4917380	2R_4917380_SNP [dm3] 2R_9029875_SNP [dm6]	G	A	7.081e^-6	0.028	INTRON CG8170
X	904557	X_904557_SNP [dm3] X_1010524_SNP [dm6]	A	G	7.189e^-6	0.028	DOWNSTREAM TfIIA-S-2 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_kn mE1_TFBS_ttk transposable element FlyBase
2R	14758876	2R_14758876_SNP [dm3] 2R_18871371_SNP [dm6]	C	T	7.263e^-6	0.028	INTERGENIC
3L	826248	3L_826248_SNP [dm3] 3L_826248_SNP [dm6]	C	A	7.278e^-6	0.028	DOWNSTREAM CG13900 & 2 others INTERGENIC
3R	24608646	3R_24608646_SNP [dm3] 3R_28782924_SNP [dm6]	C	G	7.352e^-6	0.028	INTERGENIC
3R	26872175	3R_26872175_SNP [dm3] 3R_31046453_SNP [dm6]	C	T	7.420e^-6	0.029	UTR_3_PRIME CanA1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	26872194	3R_26872194_SNP [dm3] 3R_31046472_SNP [dm6]	C	T	7.420e^-6	0.029	UTR_3_PRIME CanA1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	1269461	3L_1269461_SNP [dm3] 3L_1269461_SNP [dm6]	T	G	7.454e^-6	0.029	INTRON CG9134
2R	13502870	2R_13502870_SNP [dm3] 2R_17615365_SNP [dm6]	C	A	7.465e^-6	0.029	INTRON CG10936	TF binding site mE1_TFBS_inv
X	10145879	X_10145879_SNP [dm3] X_10251846_SNP [dm6]	T	A	7.474e^-6	0.029	INTRON Hk
3L	16267798	3L_16267798_SNP [dm3] 3L_16274698_SNP [dm6]	G	C	7.489e^-6	0.029	INTERGENIC
3L	3285134	3L_3285134_INS [dm3] 3L_3285134_INS [dm6]	A	AA	7.665e^-6	0.029	INTRON CG12017
3L	3285142	3L_3285142_SNP [dm3] 3L_3285142_SNP [dm6]	G	A	7.665e^-6	0.029	INTRON CG12017
3L	8034314	3L_8034314_SNP [dm3] 3L_8041214_SNP [dm6]	T	A	7.674e^-6	0.029	INTRON nmo
X	16071591	X_16071591_SNP [dm3] X_16177558_SNP [dm6]	T	A	7.674e^-6	0.029	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	19095223	2R_19095223_SNP [dm3] 2R_23207700_SNP [dm6]	C	A	7.722e^-6	0.029	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_Kr mE1_TFBS_sens
3R	10609131	3R_10609131_SNP [dm3] 3R_14783409_SNP [dm6]	G	T	7.730e^-6	0.029	INTRON jvl
2R	9735720	2R_9735720_SNP [dm3] 2R_13848215_SNP [dm6]	A	G	7.774e^-6	0.029	NON_SYNONYMOUS_CODING CG30484	TF binding site mE1_TFBS_sens
3R	21921952	3R_21921952_DEL [dm3] 3R_26096230_DEL [dm6]	TTGCTGT	T	8.065e^-6	0.03	CODON_DELETION dys
X	587346	X_587346_SNP [dm3] X_693313_SNP [dm6]	T	G	8.119e^-6	0.03	INTRON sdk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	826241	3L_826241_DEL [dm3] 3L_826241_DEL [dm6]	ACTCT	A	8.242e^-6	0.031	DOWNSTREAM CG13900 & 2 others INTERGENIC
3R	27374201	3R_27374201_SNP [dm3] 3R_31548479_SNP [dm6]	A	G	8.265e^-6	0.031	INTRON nyo
3L	3943774	3L_3943774_SNP [dm3] 3L_3943774_SNP [dm6]	T	C	8.343e^-6	0.031	SYNONYMOUS_CODING CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	8790652	X_8790652_SNP [dm3] X_8896619_SNP [dm6]	T	C	8.351e^-6	0.031	INTRON Moe	TF binding site BDTNP1_TFBS_dl
3R	18632700	3R_18632700_SNP [dm3] 3R_22806978_SNP [dm6]	C	G	8.359e^-6	0.031	UTR_3_PRIME CG7031 DOWNSTREAM CG7031
2R	14280572	2R_14280572_INS [dm3] 2R_18393067_INS [dm6]	C	CC	8.439e^-6	0.031	UPSTREAM Idgf5 INTERGENIC
3R	9868366	3R_9868366_SNP [dm3] 3R_14042644_SNP [dm6]	A	T	8.455e^-6	0.031	INTERGENIC
2L	5135959	2L_5135959_SNP [dm3] 2L_5135959_SNP [dm6]	C	G	8.518e^-6	0.031	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	18050764	2R_18050764_SNP [dm3] 2R_22163259_SNP [dm6]	T	A	8.580e^-6	0.032	NON_SYNONYMOUS_CODING a DOWNSTREAM CG34206	TF binding site mE1_TFBS_cad
3R	21003989	3R_21003989_SNP [dm3] 3R_25178267_SNP [dm6]	T	C	8.620e^-6	0.032	INTRON lobo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18747301	2R_18747301_SNP [dm3] 2R_22859778_SNP [dm6]	A	T	8.648e^-6	0.032	UPSTREAM inaD INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4796341	2L_4796341_SNP [dm3] 2L_4796341_SNP [dm6]	G	A	8.667e^-6	0.032	SYNONYMOUS_CODING CG3294 UTR_3_PRIME CG3294 DOWNSTREAM Clect27
3R	23321958	3R_23321958_SNP [dm3] 3R_27496236_SNP [dm6]	G	A	8.707e^-6	0.032	INTERGENIC
3R	18517974	3R_18517974_SNP [dm3] 3R_22692252_SNP [dm6]	G	T	8.835e^-6	0.032	SYNONYMOUS_CODING Nup133	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17863657	3R_17863657_SNP [dm3] 3R_22037935_SNP [dm6]	G	T	8.844e^-6	0.032	INTRON pit
3L	11998345	3L_11998345_SNP [dm3] 3L_12005245_SNP [dm6]	A	T	8.864e^-6	0.032	INTRON CG6928
X	8956675	X_8956675_SNP [dm3] X_9062642_SNP [dm6]	G	T	8.881e^-6	0.032	INTRON CG15365
3L	16992968	3L_16992968_SNP [dm3] 3L_16999868_SNP [dm6]	A	G	8.990e^-6	0.032	SYNONYMOUS_CODING CG3764	TF binding site mE1_TFBS_chinmo
2R	17803685	2R_17803685_INS [dm3] 2R_21916180_INS [dm6]	A	AAG	9.009e^-6	0.032	INTRON Fili
3R	20598390	3R_20598390_SNP [dm3] 3R_24772668_SNP [dm6]	G	A	9.018e^-6	0.032	INTRON CG42331
X	19022368	X_19022368_SNP [dm3] X_19128335_SNP [dm6]	C	A	9.055e^-6	0.033	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14059672	3L_14059672_SNP [dm3] 3L_14066572_SNP [dm6]	C	A	9.102e^-6	0.033	SYNONYMOUS_CODING CG32138	TF binding site mE1_TFBS_cad
3L	16427784	3L_16427784_SNP [dm3] 3L_16434684_SNP [dm6]	T	C	9.136e^-6	0.033	INTRON CG33158 & 1 other
3R	24452823	3R_24452823_SNP [dm3] 3R_28627101_SNP [dm6]	C	T	9.153e^-6	0.033	INTRON CG10011
2R	8692252	2R_8692252_SNP [dm3] 2R_12804747_SNP [dm6]	A	G	9.159e^-6	0.033	INTERGENIC
2R	8692253	2R_8692253_SNP [dm3] 2R_12804748_SNP [dm6]	G	T	9.159e^-6	0.033	INTERGENIC
2R	19095477	2R_19095477_SNP [dm3] 2R_23207954_SNP [dm6]	A	T	9.167e^-6	0.033	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_Kr
3R	23727479	3R_23727479_SNP [dm3] 3R_27901757_SNP [dm6]	G	C	9.299e^-6	0.033	INTRON CG34353
3R	23574522	3R_23574522_SNP [dm3] 3R_27748800_SNP [dm6]	C	T	9.356e^-6	0.033	DOWNSTREAM Ets98B INTERGENIC
3R	15701038	3R_15701038_INS [dm3] 3R_19875316_INS [dm6]	G	GGG	9.420e^-6	0.033	UPSTREAM CG4562 DOWNSTREAM CG17186 INTRON CG4562	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	3850491	3L_3850491_SNP [dm3] 3L_3850491_SNP [dm6]	T	A	9.424e^-6	0.033	INTRON Awh
3R	27873606	3R_27873606_SNP [dm3] 3R_32047884_SNP [dm6]	T	C	9.534e^-6	0.033	UTR_3_PRIME krz DOWNSTREAM krz
2L	4650574	2L_4650574_SNP [dm3] 2L_4650574_SNP [dm6]	G	A	9.540e^-6	0.033	UPSTREAM CG3355 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27882562	3R_27882562_SNP [dm3] 3R_32056840_SNP [dm6]	G	A	9.583e^-6	0.033	UTR_3_PRIME Map205 DOWNSTREAM Map205
2R	14556265	2R_14556265_SNP [dm3] 2R_18668760_SNP [dm6]	A	C	9.600e^-6	0.033	INTRON edl
2R	14556268	2R_14556268_MNP [dm3] 2R_18668763_MNP [dm6]	TTT	AAC	9.600e^-6	0.033	INTRON edl
2R	14556272	2R_14556272_SNP [dm3] 2R_18668767_SNP [dm6]	G	A	9.600e^-6	0.033	INTRON edl
3R	10744806	3R_10744806_SNP [dm3] 3R_14919084_SNP [dm6]	C	A	9.682e^-6	0.034	SYNONYMOUS_CODING Sdr
X	4514996	X_4514996_SNP [dm3] X_4620963_SNP [dm6]	G	A	9.730e^-6	0.034	INTRON peb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20598254	2R_20598254_SNP [dm3] 2R_24710731_SNP [dm6]	A	G	9.956e^-6	0.034	INTRON Mid1
3R	25664861	3R_25664861_INS [dm3] 3R_29839139_INS [dm6]	C	CATAGGTCC	1.012e^-5	0.035	INTERGENIC	TF binding site mE1_TFBS_inv
2R	16610461	2R_16610461_SNP [dm3] 2R_20722956_SNP [dm6]	C	T	1.021e^-5	0.035	INTRON dpr EXON CR44660
2R	9905705	2R_9905705_SNP [dm3] 2R_14018200_SNP [dm6]	G	A	1.027e^-5	0.035	INTRON mam
3R	19357039	3R_19357039_SNP [dm3] 3R_23531317_SNP [dm6]	T	G	1.030e^-5	0.035	UPSTREAM CG10175 INTERGENIC
3R	19357059	3R_19357059_SNP [dm3] 3R_23531337_SNP [dm6]	T	C	1.030e^-5	0.035	UPSTREAM CG10175 INTERGENIC
3R	20254407	3R_20254407_SNP [dm3] 3R_24428685_SNP [dm6]	G	A	1.032e^-5	0.035	INTRON nAChRalpha1
3R	20254420	3R_20254420_SNP [dm3] 3R_24428698_SNP [dm6]	G	A	1.032e^-5	0.035	INTRON nAChRalpha1
3R	20254423	3R_20254423_SNP [dm3] 3R_24428701_SNP [dm6]	C	T	1.032e^-5	0.035	INTRON nAChRalpha1
3R	6781249	3R_6781249_SNP [dm3] 3R_10955527_SNP [dm6]	T	A	1.037e^-5	0.035	INTERGENIC
2R	7945734	2R_7945734_SNP [dm3] 2R_12058229_SNP [dm6]	A	G	1.038e^-5	0.035	INTRON Drep-3
2R	15174437	2R_15174437_SNP [dm3] 2R_19286932_SNP [dm6]	T	C	1.040e^-5	0.035	UPSTREAM CG10474 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6790523	3R_6790523_SNP [dm3] 3R_10964801_SNP [dm6]	G	C	1.043e^-5	0.035	INTERGENIC	transposable element FlyBase
2L	1335071	2L_1335071_SNP [dm3] 2L_1335071_SNP [dm6]	G	A	1.046e^-5	0.035	UTR_3_PRIME CG5440 DOWNSTREAM CG5440
X	9995275	X_9995275_SNP [dm3] X_10101242_SNP [dm6]	C	G	1.057e^-5	0.036	INTRON RhoU
2R	19507726	2R_19507726_SNP [dm3] 2R_23620203_SNP [dm6]	T	C	1.058e^-5	0.036	INTERGENIC
3R	6845997	3R_6845997_SNP [dm3] 3R_11020275_SNP [dm6]	C	T	1.058e^-5	0.036	INTRON CG34114
X	2576795	X_2576795_SNP [dm3] X_2682762_SNP [dm6]	G	A	1.066e^-5	0.036	SYNONYMOUS_CODING CG2652 DOWNSTREAM CR44470	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 mE1_TFBS_chinmo
3L	5949531	3L_5949531_SNP [dm3] 3L_5956431_SNP [dm6]	T	C	1.068e^-5	0.036	INTERGENIC
2R	7949849	2R_7949849_INS [dm3] 2R_12062344_INS [dm6]	C	CCA	1.075e^-5	0.036	UTR_3_PRIME Drep-3
2R	17178169	2R_17178169_SNP [dm3] 2R_21290664_SNP [dm6]	T	G	1.077e^-5	0.036	UPSTREAM CG10505 DOWNSTREAM CG30392 INTERGENIC
X	11348600	X_11348600_SNP [dm3] X_11454567_SNP [dm6]	C	T	1.082e^-5	0.036	UPSTREAM HP5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	20096808	3L_20096808_SNP [dm3] 3L_20103708_SNP [dm6]	C	T	1.085e^-5	0.036	UTR_5_PRIME CG14186 UPSTREAM CR44679	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	808923	X_808923_SNP [dm3] X_914890_SNP [dm6]	G	C	1.086e^-5	0.036	INTRON CG43867	TF binding site mE1_TFBS_inv
X	854150	X_854150_SNP [dm3] X_960117_SNP [dm6]	G	T	1.086e^-5	0.036	INTERGENIC
3R	22908729	3R_22908729_SNP [dm3] 3R_27083007_SNP [dm6]	G	T	1.097e^-5	0.036	DOWNSTREAM Cpr97Ea & 1 other INTERGENIC	TF binding site mE1_TFBS_D
3R	4242859	3R_4242859_SNP [dm3] 3R_8417137_SNP [dm6]	T	C	1.101e^-5	0.036	INTRON CG45263
2R	19093077	2R_19093077_SNP [dm3] 2R_23205554_SNP [dm6]	G	T	1.105e^-5	0.036	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_sens
3L	8452596	3L_8452596_SNP [dm3] 3L_8459496_SNP [dm6]	A	T	1.108e^-5	0.036	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15818242	X_15818242_INS [dm3] X_15924209_INS [dm6]	T	TGTATGT	1.110e^-5	0.036	UPSTREAM Lcch3 INTRON CG8916	TF binding site mE1_TFBS_sens
X	17282966	X_17282966_SNP [dm3] X_17388933_SNP [dm6]	C	T	1.110e^-5	0.036	INTERGENIC
3L	535760	3L_535760_SNP [dm3] 3L_535760_SNP [dm6]	G	T	1.111e^-5	0.036	INTRON klar	TF binding site mE1_TFBS_Trl
2R	12973106	2R_12973106_SNP [dm3] 2R_17085601_SNP [dm6]	G	A	1.114e^-5	0.036	INTRON CG30460
2R	16317389	2R_16317389_SNP [dm3] 2R_20429884_SNP [dm6]	T	C	1.116e^-5	0.036	INTRON CG12484
2R	17028726	2R_17028726_SNP [dm3] 2R_21141221_SNP [dm6]	T	C	1.118e^-5	0.036	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	23295043	3L_23295043_SNP [dm3] 3L_23301943_SNP [dm6]	T	A	1.118e^-5	0.036	INTERGENIC	transposable element FlyBase
2L	10185537	2L_10185537_SNP [dm3] 2L_10185537_SNP [dm6]	A	T	1.120e^-5	0.036	INTRON Sur
2L	10185561	2L_10185561_SNP [dm3] 2L_10185561_SNP [dm6]	C	T	1.120e^-5	0.036	INTRON Sur
3R	14237946	3R_14237946_SNP [dm3] 3R_18412224_SNP [dm6]	T	C	1.122e^-5	0.036	UPSTREAM CG10864 INTRON CG31122	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
X	5893859	X_5893859_SNP [dm3] X_5999826_SNP [dm6]	C	T	1.123e^-5	0.036	INTRON CG4766	TF binding site BDTNP1_TFBS_dl
3R	17008887	3R_17008887_SNP [dm3] 3R_21183165_SNP [dm6]	T	G	1.124e^-5	0.036	INTRON SNF4Agamma
X	8790685	X_8790685_SNP [dm3] X_8896652_SNP [dm6]	G	T	1.128e^-5	0.036	INTRON Moe	TF binding site BDTNP1_TFBS_dl
2L	11925144	2L_11925144_SNP [dm3] 2L_11925144_SNP [dm6]	A	T	1.131e^-5	0.036	INTRON Pde1c
2L	11925150	2L_11925150_SNP [dm3] 2L_11925150_SNP [dm6]	A	C	1.131e^-5	0.036	INTRON Pde1c
2L	11925165	2L_11925165_SNP [dm3] 2L_11925165_SNP [dm6]	C	A	1.131e^-5	0.036	INTRON Pde1c
2L	11925171	2L_11925171_SNP [dm3] 2L_11925171_SNP [dm6]	C	A	1.131e^-5	0.036	INTRON Pde1c
2L	11925178	2L_11925178_INS [dm3] 2L_11925178_INS [dm6]	T	TTGC	1.131e^-5	0.036	INTRON Pde1c
2L	11925182	2L_11925182_INS [dm3] 2L_11925182_INS [dm6]	C	CTTGC	1.131e^-5	0.036	INTRON Pde1c
3R	19697595	3R_19697595_SNP [dm3] 3R_23871873_SNP [dm6]	T	C	1.135e^-5	0.036	INTRON Pli
X	1614560	X_1614560_SNP [dm3] X_1720527_SNP [dm6]	C	A	1.140e^-5	0.036	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	19007807	X_19007807_INS [dm3] X_19113774_INS [dm6]	A	ACAAAAAAACA...	1.142e^-5	0.036	INTERGENIC
3R	6188993	3R_6188993_SNP [dm3] 3R_10363271_SNP [dm6]	C	T	1.145e^-5	0.036	SYNONYMOUS_CODING Rfx	TF binding site mE1_TFBS_cad
2R	12983875	2R_12983875_SNP [dm3] 2R_17096370_SNP [dm6]	G	A	1.155e^-5	0.036	INTRON GstS1
2R	12983900	2R_12983900_SNP [dm3] 2R_17096395_SNP [dm6]	A	T	1.155e^-5	0.036	INTRON GstS1
3R	22214547	3R_22214547_SNP [dm3] 3R_26388825_SNP [dm6]	G	C	1.161e^-5	0.037	INTERGENIC
3L	15069714	3L_15069714_SNP [dm3] 3L_15076614_SNP [dm6]	C	T	1.165e^-5	0.037	DOWNSTREAM Or71a INTRON cp309
3L	5130681	3L_5130681_SNP [dm3] 3L_5137581_SNP [dm6]	G	A	1.168e^-5	0.037	SYNONYMOUS_CODING CG4611	TF binding site mE1_TFBS_chinmo
3L	6972908	3L_6972908_SNP [dm3] 3L_6979808_SNP [dm6]	C	T	1.174e^-5	0.037	START_GAINED Galphai UTR_5_PRIME Galphai DOWNSTREAM CR32385	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13710044	X_13710044_SNP [dm3] X_13816011_SNP [dm6]	A	C	1.185e^-5	0.037	INTRON Clic	TF binding site BDTNP1_TFBS_dl
3L	5353695	3L_5353695_SNP [dm3] 3L_5360595_SNP [dm6]	G	C	1.194e^-5	0.037	INTRON CG4769	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk
2R	13556186	2R_13556186_SNP [dm3] 2R_17668681_SNP [dm6]	C	A	1.200e^-5	0.037	SYNONYMOUS_CODING eIF3-S8 UPSTREAM CG30108	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15043771	2R_15043771_SNP [dm3] 2R_19156266_SNP [dm6]	T	C	1.202e^-5	0.037	SYNONYMOUS_CODING ena INTRON ena	TF binding site mE1_TFBS_sens
3R	10798941	3R_10798941_SNP [dm3] 3R_14973219_SNP [dm6]	G	C	1.205e^-5	0.037	INTERGENIC
X	11193118	X_11193118_DEL [dm3] X_11299085_DEL [dm6]	TAAGAAGTTACCGTGACTTT...	T	1.207e^-5	0.037	INTRON CG44422
3R	20472381	3R_20472381_SNP [dm3] 3R_24646659_SNP [dm6]	G	T	1.212e^-5	0.038	INTRON puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17561294	2R_17561294_SNP [dm3] 2R_21673789_SNP [dm6]	G	A	1.223e^-5	0.038	DOWNSTREAM CG15676 INTERGENIC
X	20351670	X_20351670_SNP [dm3] X_20480643_SNP [dm6]	C	G	1.225e^-5	0.038	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	8790876	X_8790876_SNP [dm3] X_8896843_SNP [dm6]	A	G	1.225e^-5	0.038	INTRON Moe
3R	19572523	3R_19572523_SNP [dm3] 3R_23746801_SNP [dm6]	G	T	1.231e^-5	0.038	INTRON Hmgcr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3943996	3L_3943996_SNP [dm3] 3L_3943996_SNP [dm6]	C	T	1.246e^-5	0.038	SYNONYMOUS_CODING CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	10798470	3R_10798470_SNP [dm3] 3R_14972748_SNP [dm6]	G	A	1.246e^-5	0.038	INTERGENIC
3L	4860307	3L_4860307_SNP [dm3] 3L_4860307_SNP [dm6]	T	C	1.248e^-5	0.038	UTR_5_PRIME CG32235 UPSTREAM CG17150	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	13547723	2R_13547723_SNP [dm3] 2R_17660218_SNP [dm6]	T	C	1.252e^-5	0.038	INTRON CCHa1-R
X	20351617	X_20351617_SNP [dm3] X_20480590_SNP [dm6]	C	T	1.261e^-5	0.038	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	19022735	3R_19022735_SNP [dm3] 3R_23197013_SNP [dm6]	T	C	1.265e^-5	0.039	INTRON cnc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	12304723	X_12304723_SNP [dm3] X_12410690_SNP [dm6]	G	A	1.270e^-5	0.039	DOWNSTREAM CG2574 & 1 other INTERGENIC
3L	18923040	3L_18923040_DEL [dm3] 3L_18929940_DEL [dm6]	GG	G	1.278e^-5	0.039	INTRON CG32204
3R	16803083	3R_16803083_SNP [dm3] 3R_20977361_SNP [dm6]	C	A	1.282e^-5	0.039	UPSTREAM Calx INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4173773	2L_4173773_SNP [dm3] 2L_4173773_SNP [dm6]	G	A	1.292e^-5	0.039	INTERGENIC
3R	6799591	3R_6799591_SNP [dm3] 3R_10973869_SNP [dm6]	T	G	1.299e^-5	0.039	INTRON CG34114
3L	6840118	3L_6840118_SNP [dm3] 3L_6847018_SNP [dm6]	C	T	1.299e^-5	0.039	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3R	17770751	3R_17770751_SNP [dm3] 3R_21945029_SNP [dm6]	T	A	1.303e^-5	0.039	INTERGENIC
3L	7704138	3L_7704138_SNP [dm3] 3L_7711038_SNP [dm6]	A	T	1.305e^-5	0.039	INTRON CG32373 & 1 other
3L	6987827	3L_6987827_SNP [dm3] 3L_6994727_SNP [dm6]	C	T	1.314e^-5	0.039	DOWNSTREAM bin INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	5674739	2R_5674739_SNP [dm3] 2R_9787234_SNP [dm6]	G	T	1.314e^-5	0.039	INTRON CG1688
3R	3852289	3R_3852289_SNP [dm3] 3R_8026567_SNP [dm6]	A	G	1.334e^-5	0.04	INTRON CG2747	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	25664825	3R_25664825_SNP [dm3] 3R_29839103_SNP [dm6]	A	G	1.345e^-5	0.04	INTERGENIC	TF binding site mE1_TFBS_inv
3L	9436430	3L_9436430_SNP [dm3] 3L_9443330_SNP [dm6]	A	T	1.348e^-5	0.04	UTR_5_PRIME CG33926	TF binding site BDTNP1_TFBS_dl
3R	15280055	3R_15280055_SNP [dm3] 3R_19454333_SNP [dm6]	C	T	1.355e^-5	0.04	INTRON CG31221
3L	20139030	3L_20139030_SNP [dm3] 3L_20145930_SNP [dm6]	G	C	1.362e^-5	0.04	INTERGENIC
2R	5062962	2R_5062962_SNP [dm3] 2R_9175457_SNP [dm6]	T	G	1.366e^-5	0.04	NON_SYNONYMOUS_CODING Rme-8
2L	18767754	2L_18767754_SNP [dm3] 2L_18767754_SNP [dm6]	T	C	1.367e^-5	0.04	INTRON ham
X	9995841	X_9995841_SNP [dm3] X_10101808_SNP [dm6]	T	C	1.368e^-5	0.04	INTRON RhoU
2R	20223804	2R_20223804_SNP [dm3] 2R_24336281_SNP [dm6]	C	G	1.379e^-5	0.041	UPSTREAM CR44282 INTERGENIC
3L	3306157	3L_3306157_SNP [dm3] 3L_3306157_SNP [dm6]	T	A	1.379e^-5	0.041	INTRON ZnT63C
2L	9354444	2L_9354444_SNP [dm3] 2L_9354444_SNP [dm6]	A	T	1.380e^-5	0.041	INTERGENIC
2L	9354465	2L_9354465_SNP [dm3] 2L_9354465_SNP [dm6]	A	T	1.380e^-5	0.041	INTERGENIC
X	9399210	X_9399210_SNP [dm3] X_9505177_SNP [dm6]	A	G	1.391e^-5	0.041	INTRON CG32700
2R	5877605	2R_5877605_SNP [dm3] 2R_9990100_SNP [dm6]	T	G	1.399e^-5	0.041	UPSTREAM TER94 & 1 other INTRON TER94	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
2R	17032732	2R_17032732_SNP [dm3] 2R_21145227_SNP [dm6]	A	G	1.410e^-5	0.041	NON_SYNONYMOUS_CODING Xbp1 UTR_3_PRIME Xbp1 UPSTREAM Hmg-2
3L	8521839	3L_8521839_SNP [dm3] 3L_8528739_SNP [dm6]	G	T	1.413e^-5	0.041	UTR_5_PRIME foi INTRON foi
2R	17476994	2R_17476994_INS [dm3] 2R_21589489_INS [dm6]	A	AA	1.414e^-5	0.041	UPSTREAM CG33225 INTERGENIC
3R	2699206	3R_2699206_SNP [dm3] 3R_6873484_SNP [dm6]	A	C	1.419e^-5	0.041	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	1264824	3L_1264824_SNP [dm3] 3L_1264824_SNP [dm6]	C	T	1.421e^-5	0.041	UPSTREAM CG9134 INTRON CG9134
3L	2703000	3L_2703000_SNP [dm3] 3L_2703000_SNP [dm6]	A	T	1.429e^-5	0.041	INTRON Fife
3R	22214536	3R_22214536_SNP [dm3] 3R_26388814_SNP [dm6]	G	T	1.430e^-5	0.041	INTERGENIC
3R	6848815	3R_6848815_SNP [dm3] 3R_11023093_SNP [dm6]	C	G	1.437e^-5	0.042	INTRON CG34114
3L	2702913	3L_2702913_SNP [dm3] 3L_2702913_SNP [dm6]	G	A	1.438e^-5	0.042	INTRON Fife
3R	5160270	3R_5160270_SNP [dm3] 3R_9334548_SNP [dm6]	G	T	1.454e^-5	0.042	NON_SYNONYMOUS_CODING CG8866 UPSTREAM CG8121	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5676695	3L_5676695_SNP [dm3] 3L_5683595_SNP [dm6]	G	A	1.468e^-5	0.042	INTRON sif
2L	9667969	2L_9667969_SNP [dm3] 2L_9667969_SNP [dm6]	C	A	1.473e^-5	0.042	INTERGENIC
3L	7171547	3L_7171547_SNP [dm3] 3L_7178447_SNP [dm6]	T	A	1.486e^-5	0.043	INTRON Dscam2
3L	10310641	3L_10310641_SNP [dm3] 3L_10317541_SNP [dm6]	T	A	1.496e^-5	0.043	INTERGENIC
2R	20224174	2R_20224174_SNP [dm3] 2R_24336651_SNP [dm6]	G	A	1.503e^-5	0.043	UPSTREAM CR44282 INTERGENIC
3L	7245099	3L_7245099_SNP [dm3] 3L_7251999_SNP [dm6]	G	T	1.504e^-5	0.043	SYNONYMOUS_CODING CG14830 EXON CR43470	TF binding site mE1_TFBS_chinmo
X	18269788	X_18269788_DEL [dm3] X_18375755_DEL [dm6]	TCCGCTTTGGGAGAT...	T	1.516e^-5	0.043	INTRON CrebB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6837611	3L_6837611_SNP [dm3] 3L_6844511_SNP [dm6]	C	T	1.517e^-5	0.043	INTERGENIC
2R	14238063	2R_14238063_SNP [dm3] 2R_18350558_SNP [dm6]	C	T	1.517e^-5	0.043	INTRON sbb
2R	18851722	2R_18851722_SNP [dm3] 2R_22964199_SNP [dm6]	G	A	1.517e^-5	0.043	INTERGENIC
2R	14761204	2R_14761204_SNP [dm3] 2R_18873699_SNP [dm6]	C	T	1.519e^-5	0.043	INTERGENIC
2R	14762180	2R_14762180_SNP [dm3] 2R_18874675_SNP [dm6]	C	T	1.519e^-5	0.043	INTERGENIC
2R	15982780	2R_15982780_SNP [dm3] 2R_20095275_SNP [dm6]	C	T	1.527e^-5	0.043	INTERGENIC
X	16320247	X_16320247_SNP [dm3] X_16426214_SNP [dm6]	G	A	1.530e^-5	0.043	INTRON hang	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	8790667	X_8790667_SNP [dm3] X_8896634_SNP [dm6]	A	C	1.545e^-5	0.044	INTRON Moe	TF binding site BDTNP1_TFBS_dl
X	15193070	X_15193070_SNP [dm3] X_15299037_SNP [dm6]	G	A	1.575e^-5	0.044	UTR_5_PRIME gce UPSTREAM CR44429 INTRON gce	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18684310	3R_18684310_SNP [dm3] 3R_22858588_SNP [dm6]	C	G	1.576e^-5	0.044	INTERGENIC
3L	6973251	3L_6973251_SNP [dm3] 3L_6980151_SNP [dm6]	C	T	1.578e^-5	0.044	UPSTREAM Galphai DOWNSTREAM CR32385 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17692279	3L_17692279_SNP [dm3] 3L_17699179_SNP [dm6]	T	C	1.579e^-5	0.044	INTRON Ccn
2L	4650799	2L_4650799_SNP [dm3] 2L_4650799_SNP [dm6]	C	T	1.582e^-5	0.044	UPSTREAM CG3355 INTERGENIC
3L	23340682	3L_23340682_SNP [dm3] 3L_23347582_SNP [dm6]	G	T	1.591e^-5	0.044	INTERGENIC	transposable element FlyBase
3R	24454010	3R_24454010_SNP [dm3] 3R_28628288_SNP [dm6]	C	G	1.600e^-5	0.045	INTRON CG10011
X	2877565	X_2877565_SNP [dm3] X_2983532_SNP [dm6]	G	A	1.609e^-5	0.045	INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4355530	2L_4355530_SNP [dm3] 2L_4355530_SNP [dm6]	A	T	1.620e^-5	0.045	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	625585	2L_625585_SNP [dm3] 2L_625585_SNP [dm6]	C	T	1.640e^-5	0.045	UPSTREAM CG2839 DOWNSTREAM lectin-21Ca INTERGENIC
3L	17691084	3L_17691084_SNP [dm3] 3L_17697984_SNP [dm6]	C	A	1.640e^-5	0.045	INTRON Ccn
3L	17693205	3L_17693205_SNP [dm3] 3L_17700105_SNP [dm6]	T	A	1.640e^-5	0.045	INTRON Ccn
3L	17693287	3L_17693287_SNP [dm3] 3L_17700187_SNP [dm6]	A	G	1.640e^-5	0.045	INTRON Ccn
3L	17693624	3L_17693624_SNP [dm3] 3L_17700524_SNP [dm6]	A	C	1.640e^-5	0.045	INTRON Ccn
3L	17694766	3L_17694766_SNP [dm3] 3L_17701666_SNP [dm6]	G	A	1.640e^-5	0.045	INTRON Ccn
3R	16885004	3R_16885004_SNP [dm3] 3R_21059282_SNP [dm6]	A	G	1.641e^-5	0.045	UTR_5_PRIME Mvl INTRON Mvl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
X	10007675	X_10007675_SNP [dm3] X_10113642_SNP [dm6]	C	G	1.641e^-5	0.045	DOWNSTREAM CR44894 INTRON RhoU	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18604464	2R_18604464_SNP [dm3] 2R_22716959_SNP [dm6]	C	T	1.642e^-5	0.045	SYNONYMOUS_CODING CG30268 DOWNSTREAM jbug
2L	4103582	2L_4103582_SNP [dm3] 2L_4103582_SNP [dm6]	G	A	1.647e^-5	0.045	INTRON ed
X	85591	X_85591_SNP [dm3] X_188587_SNP [dm6]	A	G	1.659e^-5	0.045	INTRON tyn
3L	2650276	3L_2650276_SNP [dm3] 3L_2650276_SNP [dm6]	C	T	1.660e^-5	0.045	NON_SYNONYMOUS_CODING Aats-pro UTR_3_PRIME Aats-pro DOWNSTREAM CG1246	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13129512	2L_13129512_SNP [dm3] 2L_13129512_SNP [dm6]	A	T	1.662e^-5	0.045	INTERGENIC
3R	18425229	3R_18425229_SNP [dm3] 3R_22599507_SNP [dm6]	C	T	1.662e^-5	0.045	INTRON Efa6	TF binding site BDTNP1_TFBS_da
3R	18428751	3R_18428751_SNP [dm3] 3R_22603029_SNP [dm6]	A	G	1.662e^-5	0.045	NON_SYNONYMOUS_CODING Efa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	13531274	2R_13531274_SNP [dm3] 2R_17643769_SNP [dm6]	C	T	1.668e^-5	0.045	INTERGENIC
2R	14276129	2R_14276129_SNP [dm3] 2R_18388624_SNP [dm6]	A	T	1.672e^-5	0.045	UTR_3_PRIME IM3 UPSTREAM CG16836 DOWNSTREAM IM3
2R	12381177	2R_12381177_SNP [dm3] 2R_16493672_SNP [dm6]	T	C	1.672e^-5	0.045	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	7149125	3R_7149125_SNP [dm3] 3R_11323403_SNP [dm6]	G	A	1.698e^-5	0.046	INTERGENIC
2R	18747297	2R_18747297_SNP [dm3] 2R_22859774_SNP [dm6]	C	T	1.701e^-5	0.046	UPSTREAM inaD INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	6687830	3R_6687830_SNP [dm3] 3R_10862108_SNP [dm6]	A	C	1.703e^-5	0.046	INTRON CG6574	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	3447172	3L_3447172_SNP [dm3] 3L_3447172_SNP [dm6]	A	C	1.703e^-5	0.046	INTRON eIF5B
3L	11388635	3L_11388635_SNP [dm3] 3L_11395535_SNP [dm6]	G	A	1.716e^-5	0.046	SYNONYMOUS_CODING CG11726
3L	11388877	3L_11388877_SNP [dm3] 3L_11395777_SNP [dm6]	A	T	1.716e^-5	0.046	DOWNSTREAM CG11726 INTERGENIC
2L	7026225	2L_7026225_SNP [dm3] 2L_7026225_SNP [dm6]	T	G	1.717e^-5	0.046	SYNONYMOUS_CODING CG31908	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	7148817	3L_7148817_SNP [dm3] 3L_7155717_SNP [dm6]	T	C	1.720e^-5	0.046	INTRON corn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7148821	3L_7148821_SNP [dm3] 3L_7155721_SNP [dm6]	A	C	1.720e^-5	0.046	INTRON corn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7594449	3L_7594449_SNP [dm3] 3L_7601349_SNP [dm6]	A	T	1.721e^-5	0.046	INTRON CG33275
2R	14694913	2R_14694913_SNP [dm3] 2R_18807408_SNP [dm6]	T	C	1.729e^-5	0.046	DOWNSTREAM CR44468 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
3R	11144609	3R_11144609_SNP [dm3] 3R_15318887_SNP [dm6]	A	G	1.731e^-5	0.046	SYNONYMOUS_CODING CG6276 DOWNSTREAM CG14866	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18481594	3R_18481594_SNP [dm3] 3R_22655872_SNP [dm6]	G	T	1.732e^-5	0.046	INTRON CG45058
2L	4247495	2L_4247495_SNP [dm3] 2L_4247495_SNP [dm6]	G	A	1.751e^-5	0.046	INTRON CR44059
2R	18746029	2R_18746029_SNP [dm3] 2R_22858506_SNP [dm6]	G	A	1.755e^-5	0.047	INTRON inaD
3R	26874059	3R_26874059_SNP [dm3] 3R_31048337_SNP [dm6]	C	G	1.759e^-5	0.047	UPSTREAM Aph-4 INTERGENIC
X	9441231	X_9441231_MNP [dm3] X_9547198_MNP [dm6]	TAT	CCA	1.761e^-5	0.047	INTRON CG32700
3R	23035372	3R_23035372_SNP [dm3] 3R_27209650_SNP [dm6]	A	G	1.763e^-5	0.047	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6973232	3L_6973232_SNP [dm3] 3L_6980132_SNP [dm6]	T	A	1.773e^-5	0.047	UPSTREAM Galphai DOWNSTREAM CR32385 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6973249	3L_6973249_SNP [dm3] 3L_6980149_SNP [dm6]	C	G	1.773e^-5	0.047	UPSTREAM Galphai DOWNSTREAM CR32385 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5902688	3L_5902688_SNP [dm3] 3L_5909588_SNP [dm6]	C	T	1.783e^-5	0.047	NON_SYNONYMOUS_CODING CG13288
2R	5876401	2R_5876401_SNP [dm3] 2R_9988896_SNP [dm6]	A	T	1.786e^-5	0.047	UPSTREAM TER94 EXON CR45324	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5876435	2R_5876435_SNP [dm3] 2R_9988930_SNP [dm6]	A	T	1.786e^-5	0.047	UPSTREAM TER94 EXON CR45324	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5876436	2R_5876436_SNP [dm3] 2R_9988931_SNP [dm6]	G	A	1.786e^-5	0.047	UPSTREAM TER94 EXON CR45324	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5876461	2R_5876461_SNP [dm3] 2R_9988956_SNP [dm6]	T	C	1.786e^-5	0.047	UPSTREAM TER94 EXON CR45324	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2R	5878578	2R_5878578_SNP [dm3] 2R_9991073_SNP [dm6]	A	T	1.786e^-5	0.047	SYNONYMOUS_CODING TER94	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	14439928	3R_14439928_SNP [dm3] 3R_18614206_SNP [dm6]	G	A	1.787e^-5	0.047	INTRON qin & 1 other
3R	21339150	3R_21339150_SNP [dm3] 3R_25513428_SNP [dm6]	A	G	1.790e^-5	0.047	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3495922	3L_3495922_SNP [dm3] 3L_3495922_SNP [dm6]	T	G	1.797e^-5	0.047	INTRON CG42324
3R	5161051	3R_5161051_SNP [dm3] 3R_9335329_SNP [dm6]	A	T	1.804e^-5	0.047	UTR_5_PRIME CG8121 UPSTREAM CG8866 INTRON CG8121	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1270219	3L_1270219_SNP [dm3] 3L_1270219_SNP [dm6]	A	C	1.817e^-5	0.047	INTRON CG9134
3L	5677293	3L_5677293_SNP [dm3] 3L_5684193_SNP [dm6]	G	A	1.819e^-5	0.047	INTRON sif
3R	22579996	3R_22579996_INS [dm3] 3R_26754274_INS [dm6]	C	CTCAC	1.821e^-5	0.047	INTERGENIC
3L	13624087	3L_13624087_SNP [dm3] 3L_13630987_SNP [dm6]	T	G	1.830e^-5	0.047	INTRON bru-3
2R	17168816	2R_17168816_SNP [dm3] 2R_21281311_SNP [dm6]	A	G	1.831e^-5	0.047	SYNONYMOUS_CODING CG34203 UPSTREAM MFS16 DOWNSTREAM Rgk3
3R	14580024	3R_14580024_SNP [dm3] 3R_18754302_SNP [dm6]	T	A	1.834e^-5	0.047	NON_SYNONYMOUS_CODING CG14299
3R	25933690	3R_25933690_SNP [dm3] 3R_30107968_SNP [dm6]	C	T	1.834e^-5	0.047	INTRON sima
2L	8186631	2L_8186631_SNP [dm3] 2L_8186631_SNP [dm6]	C	A	1.848e^-5	0.047	SYNONYMOUS_CODING Piezo
3R	1724708	3R_1724708_SNP [dm3] 3R_5898986_SNP [dm6]	A	G	1.850e^-5	0.047	INTRON CG34113
2R	13896927	2R_13896927_SNP [dm3] 2R_18009422_SNP [dm6]	G	T	1.858e^-5	0.048	INTERGENIC
3R	26461215	3R_26461215_SNP [dm3] 3R_30635493_SNP [dm6]	G	A	1.862e^-5	0.048	INTERGENIC
X	14563426	X_14563426_INS [dm3] X_14669393_INS [dm6]	A	ACTAGTA	1.870e^-5	0.048	INTERGENIC
2R	15945879	2R_15945879_SNP [dm3] 2R_20058374_SNP [dm6]	G	A	1.870e^-5	0.048	EXON CR44631	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	7146149	3L_7146149_SNP [dm3] 3L_7153049_SNP [dm6]	G	A	1.872e^-5	0.048	INTRON corn
3L	11791339	3L_11791339_SNP [dm3] 3L_11798239_SNP [dm6]	A	C	1.873e^-5	0.048	SYNONYMOUS_CODING Klp68D DOWNSTREAM CG10361	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12778338	X_12778338_SNP [dm3] X_12884305_SNP [dm6]	G	C	1.876e^-5	0.048	INTRON Pde9
3L	22457332	3L_22457332_SNP [dm3] 3L_22464232_SNP [dm6]	G	T	1.883e^-5	0.048	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2L	8204414	2L_8204414_SNP [dm3] 2L_8204414_SNP [dm6]	T	A	1.886e^-5	0.048	DOWNSTREAM CR44120 INTRON CR44119 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3584735	3L_3584735_DEL [dm3] 3L_3584735_DEL [dm6]	CT	C	1.889e^-5	0.048	INTRON Eip63E
2L	4795305	2L_4795305_SNP [dm3] 2L_4795305_SNP [dm6]	T	C	1.895e^-5	0.048	SYNONYMOUS_CODING CG3294	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4795311	2L_4795311_SNP [dm3] 2L_4795311_SNP [dm6]	C	T	1.895e^-5	0.048	SYNONYMOUS_CODING CG3294	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17340379	3R_17340379_SNP [dm3] 3R_21514657_SNP [dm6]	G	A	1.906e^-5	0.048	INTERGENIC
2R	5685812	2R_5685812_SNP [dm3] 2R_9798307_SNP [dm6]	A	G	1.916e^-5	0.048	DOWNSTREAM CG1698 INTRON CG1688
3L	19138064	3L_19138064_SNP [dm3] 3L_19144964_SNP [dm6]	G	A	1.928e^-5	0.048	SYNONYMOUS_CODING fz2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22578497	3R_22578497_SNP [dm3] 3R_26752775_SNP [dm6]	T	A	1.946e^-5	0.049	INTERGENIC
X	12263224	X_12263224_SNP [dm3] X_12369191_SNP [dm6]	A	T	1.959e^-5	0.049	INTERGENIC
X	20780779	X_20780779_SNP [dm3] X_20909752_SNP [dm6]	A	T	1.962e^-5	0.049	INTRON shakB
3R	19872987	3R_19872987_SNP [dm3] 3R_24047265_SNP [dm6]	G	T	1.980e^-5	0.049	UTR_5_PRIME Rox8 UPSTREAM CG5986 & 1 other INTRON Rox8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	6725500	3L_6725500_SNP [dm3] 3L_6732400_SNP [dm6]	G	C	1.982e^-5	0.049	NON_SYNONYMOUS_CODING dikar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	14955847	3R_14955847_SNP [dm3] 3R_19130125_SNP [dm6]	G	T	1.992e^-5	0.05	SYNONYMOUS_CODING CG6040	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9513966	3L_9513966_SNP [dm3] 3L_9520866_SNP [dm6]	C	T	1.995e^-5	0.05	INTRON CG33700
3L	7230000	3L_7230000_SNP [dm3] 3L_7236900_SNP [dm6]	G	T	1.997e^-5	0.05	UTR_3_PRIME CG14829 DOWNSTREAM CG14826
2L	3283492	2L_3283492_SNP [dm3] 2L_3283492_SNP [dm6]	T	C	1.999e^-5	0.05	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1490606	2L_1490606_SNP [dm3] 2L_1490606_SNP [dm6]	A	T	2.006e^-5	0.05	INTERGENIC
2R	14517428	2R_14517428_SNP [dm3] 2R_18629923_SNP [dm6]	T	A	2.007e^-5	0.05	UTR_3_PRIME CG5482 DOWNSTREAM Eip55E	TF binding site mE1_TFBS_cnc
2L	13129401	2L_13129401_INS [dm3] 2L_13129401_INS [dm6]	T	TA	2.032e^-5	0.05	INTERGENIC
3R	18517406	3R_18517406_SNP [dm3] 3R_22691684_SNP [dm6]	C	T	2.048e^-5	0.05	INTRON Nup133	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18517463	3R_18517463_SNP [dm3] 3R_22691741_SNP [dm6]	C	T	2.048e^-5	0.05	SYNONYMOUS_CODING Nup133	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	14484635	3R_14484635_INS [dm3] 3R_18658913_INS [dm6]	T	TCTT	2.050e^-5	0.05	UTR_5_PRIME CG31224 UPSTREAM CstF-64 INTRON CG31224	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	21153405	3L_21153405_SNP [dm3] 3L_21160305_SNP [dm6]	C	T	2.061e^-5	0.051	INTRON Ac78C
3R	9322353	3R_9322353_SNP [dm3] 3R_13496631_SNP [dm6]	C	A	2.075e^-5	0.051	INTERGENIC
X	9931860	X_9931860_SNP [dm3] X_10037827_SNP [dm6]	T	A	2.082e^-5	0.051	SYNONYMOUS_CODING Cht6 INTRON Cht6
X	10110272	X_10110272_SNP [dm3] X_10216239_SNP [dm6]	A	T	2.082e^-5	0.051	UTR_3_PRIME l_1_G0230 INTRON CG2962
X	10110278	X_10110278_SNP [dm3] X_10216245_SNP [dm6]	G	C	2.082e^-5	0.051	UTR_3_PRIME l_1_G0230 INTRON CG2962
3R	14237860	3R_14237860_SNP [dm3] 3R_18412138_SNP [dm6]	G	C	2.101e^-5	0.051	UPSTREAM CG10864 INTRON CG31122	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
X	3600613	X_3600613_SNP [dm3] X_3706580_SNP [dm6]	T	G	2.106e^-5	0.051	INTRON Rala
2L	7091614	2L_7091614_SNP [dm3] 2L_7091614_SNP [dm6]	A	T	2.117e^-5	0.052	INTERGENIC
3R	7402846	3R_7402846_SNP [dm3] 3R_11577124_SNP [dm6]	A	G	2.129e^-5	0.052	SYNONYMOUS_CODING CG6790	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14513804	3L_14513804_SNP [dm3] 3L_14520704_SNP [dm6]	G	T	2.129e^-5	0.052	INTRON bbg & 1 other
3L	6025524	3L_6025524_SNP [dm3] 3L_6032424_SNP [dm6]	A	C	2.134e^-5	0.052	DOWNSTREAM CG10477 INTERGENIC
3R	20804732	3R_20804732_SNP [dm3] 3R_24979010_SNP [dm6]	A	G	2.142e^-5	0.052	INTERGENIC
X	16304628	X_16304628_SNP [dm3] X_16410595_SNP [dm6]	C	T	2.154e^-5	0.052	SYNONYMOUS_CODING CG4301
X	7136147	X_7136147_SNP [dm3] X_7242114_SNP [dm6]	A	T	2.154e^-5	0.052	DOWNSTREAM CG9650 INTRON CR44357	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2R	17984240	2R_17984240_SNP [dm3] 2R_22096735_SNP [dm6]	C	A	2.156e^-5	0.052	INTRON CG11073
X	8363898	X_8363898_SNP [dm3] X_8469865_SNP [dm6]	A	G	2.160e^-5	0.052	UPSTREAM CG12116 INTRON CG33223
3R	14616369	3R_14616369_SNP [dm3] 3R_18790647_SNP [dm6]	T	C	2.160e^-5	0.052	INTRON CG7720
2R	7677260	2R_7677260_INS [dm3] 2R_11789755_INS [dm6]	A	AA	2.160e^-5	0.052	UPSTREAM ths & 1 other INTRON ths	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	40401	X_40401_SNP [dm3] X_144014_SNP [dm6]	T	C	2.169e^-5	0.052	INTRON CG17707 & 1 other
3L	5353101	3L_5353101_SNP [dm3] 3L_5360001_SNP [dm6]	T	A	2.182e^-5	0.052	UPSTREAM CG4769 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19099456	3L_19099456_SNP [dm3] 3L_19106356_SNP [dm6]	T	C	2.190e^-5	0.052	UTR_3_PRIME CG14082 DOWNSTREAM CG14082
3L	8741418	3L_8741418_SNP [dm3] 3L_8748318_SNP [dm6]	G	A	2.201e^-5	0.053	DOWNSTREAM CG13306 INTERGENIC
3R	26361099	3R_26361099_SNP [dm3] 3R_30535377_SNP [dm6]	C	T	2.203e^-5	0.053	INTRON tmod
X	9797223	X_9797223_SNP [dm3] X_9903190_SNP [dm6]	T	C	2.207e^-5	0.053	INTERGENIC
3L	13282618	3L_13282618_SNP [dm3] 3L_13289518_SNP [dm6]	C	T	2.213e^-5	0.053	INTERGENIC
3L	13282661	3L_13282661_SNP [dm3] 3L_13289561_SNP [dm6]	T	C	2.213e^-5	0.053	INTERGENIC
3L	13282666	3L_13282666_SNP [dm3] 3L_13289566_SNP [dm6]	T	G	2.213e^-5	0.053	INTERGENIC
3L	5815166	3L_5815166_SNP [dm3] 3L_5822066_SNP [dm6]	A	T	2.215e^-5	0.053	INTRON vn
3R	22883184	3R_22883184_SNP [dm3] 3R_27057462_SNP [dm6]	A	G	2.226e^-5	0.053	NON_SYNONYMOUS_CODING RYa-R SYNONYMOUS_CODING RYa-R DOWNSTREAM Nep5 & 1 other
3R	22883205	3R_22883205_SNP [dm3] 3R_27057483_SNP [dm6]	A	T	2.226e^-5	0.053	DOWNSTREAM Nep5 & 1 other INTRON RYa-R
2R	11274972	2R_11274972_SNP [dm3] 2R_15387467_SNP [dm6]	G	T	2.230e^-5	0.053	UTR_3_PRIME SRPK
2L	12238996	2L_12238996_SNP [dm3] 2L_12238996_SNP [dm6]	A	C	2.233e^-5	0.053	INTRON aret
2R	13554440	2R_13554440_SNP [dm3] 2R_17666935_SNP [dm6]	G	A	2.245e^-5	0.053	SYNONYMOUS_CODING eIF3-S8	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18091294	2L_18091294_SNP [dm3] 2L_18091294_SNP [dm6]	C	A	2.267e^-5	0.053	INTRON CG15153
3L	15057358	3L_15057358_SNP [dm3] 3L_15064258_SNP [dm6]	G	A	2.282e^-5	0.054	INTRON Sytbeta	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15057368	3L_15057368_SNP [dm3] 3L_15064268_SNP [dm6]	G	A	2.282e^-5	0.054	INTRON Sytbeta	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22912381	3R_22912381_SNP [dm3] 3R_27086659_SNP [dm6]	G	A	2.292e^-5	0.054	UPSTREAM Cpr97Ea INTRON Cpr97Ea
3R	23297828	3R_23297828_SNP [dm3] 3R_27472106_SNP [dm6]	A	T	2.297e^-5	0.054	INTERGENIC
3L	5321095	3L_5321095_SNP [dm3] 3L_5327995_SNP [dm6]	G	A	2.304e^-5	0.054	INTERGENIC
3R	7144018	3R_7144018_SNP [dm3] 3R_11318296_SNP [dm6]	G	C	2.314e^-5	0.054	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8938142	2R_8938142_SNP [dm3] 2R_13050637_SNP [dm6]	G	A	2.321e^-5	0.054	UPSTREAM CG13324 INTERGENIC
3R	27095180	3R_27095180_SNP [dm3] 3R_31269458_SNP [dm6]	C	A	2.322e^-5	0.054	DOWNSTREAM ppk24 INTERGENIC
3R	17141333	3R_17141333_SNP [dm3] 3R_21315611_SNP [dm6]	A	T	2.324e^-5	0.054	EXON Hsromega	TF binding site mE1_TFBS_zfh1
3R	22964044	3R_22964044_SNP [dm3] 3R_27138322_SNP [dm6]	G	T	2.325e^-5	0.054	INTRON CG6051
2R	13764180	2R_13764180_SNP [dm3] 2R_17876675_SNP [dm6]	T	C	2.335e^-5	0.054	DOWNSTREAM CG30325 INTRON Elk
3R	25994241	3R_25994241_SNP [dm3] 3R_30168519_SNP [dm6]	G	A	2.339e^-5	0.054	SYNONYMOUS_CODING CG31028	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17803732	2R_17803732_SNP [dm3] 2R_21916227_SNP [dm6]	T	C	2.341e^-5	0.054	INTRON Fili
2R	14667054	2R_14667054_SNP [dm3] 2R_18779549_SNP [dm6]	G	C	2.362e^-5	0.055	INTERGENIC
3L	9554018	3L_9554018_SNP [dm3] 3L_9560918_SNP [dm6]	A	T	2.369e^-5	0.055	INTRON CG42673
3R	23039024	3R_23039024_SNP [dm3] 3R_27213302_SNP [dm6]	C	T	2.370e^-5	0.055	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13970805	3L_13970805_SNP [dm3] 3L_13977705_SNP [dm6]	C	A	2.381e^-5	0.055	UTR_3_PRIME Hsc70-1 DOWNSTREAM CG17364
3L	13970806	3L_13970806_SNP [dm3] 3L_13977706_SNP [dm6]	T	A	2.381e^-5	0.055	UTR_3_PRIME Hsc70-1 DOWNSTREAM CG17364
2L	10584109	2L_10584109_SNP [dm3] 2L_10584109_SNP [dm6]	T	C	2.394e^-5	0.055	INTRON Trim9
X	5951052	X_5951052_SNP [dm3] X_6057019_SNP [dm6]	G	T	2.395e^-5	0.055	INTRON CG5921	TF binding site BDTNP1_TFBS_twi
3R	16671049	3R_16671049_SNP [dm3] 3R_20845327_SNP [dm6]	G	T	2.402e^-5	0.055	DOWNSTREAM CG15695 INTERGENIC	transposable element FlyBase
X	9516684	X_9516684_SNP [dm3] X_9622651_SNP [dm6]	G	A	2.418e^-5	0.055	UTR_3_PRIME CG42797 DOWNSTREAM CG42797
3R	2747693	3R_2747693_DEL [dm3] 3R_6921971_DEL [dm6]	GATTGAAAATAG...	C	2.426e^-5	0.055	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5321096	3L_5321096_SNP [dm3] 3L_5327996_SNP [dm6]	G	A	2.429e^-5	0.055	INTERGENIC
3R	27099501	3R_27099501_SNP [dm3] 3R_31273779_SNP [dm6]	C	T	2.442e^-5	0.055	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27099512	3R_27099512_SNP [dm3] 3R_31273790_SNP [dm6]	C	G	2.442e^-5	0.055	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27099515	3R_27099515_SNP [dm3] 3R_31273793_SNP [dm6]	C	A	2.442e^-5	0.055	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27099517	3R_27099517_SNP [dm3] 3R_31273795_SNP [dm6]	C	G	2.442e^-5	0.055	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27099521	3R_27099521_SNP [dm3] 3R_31273799_SNP [dm6]	C	G	2.442e^-5	0.055	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27099524	3R_27099524_SNP [dm3] 3R_31273802_SNP [dm6]	A	G	2.442e^-5	0.055	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27099531	3R_27099531_SNP [dm3] 3R_31273809_SNP [dm6]	A	T	2.442e^-5	0.055	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27099590	3R_27099590_SNP [dm3] 3R_31273868_SNP [dm6]	C	T	2.442e^-5	0.055	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16815195	2R_16815195_SNP [dm3] 2R_20927690_SNP [dm6]	T	C	2.449e^-5	0.055	INTRON Rx
3L	6971356	3L_6971356_SNP [dm3] 3L_6978256_SNP [dm6]	T	C	2.455e^-5	0.055	INTRON Galphai EXON CR32385	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10239740	2R_10239740_SNP [dm3] 2R_14352235_SNP [dm6]	A	G	2.456e^-5	0.055	UTR_5_PRIME CG8613 DOWNSTREAM Shroom	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
3L	9581563	3L_9581563_SNP [dm3] 3L_9588463_SNP [dm6]	T	C	2.460e^-5	0.055	INTRON CG42673
3L	3577251	3L_3577251_SNP [dm3] 3L_3577251_SNP [dm6]	C	T	2.465e^-5	0.055	INTRON Eip63E
2R	19822999	2R_19822999_SNP [dm3] 2R_23935476_SNP [dm6]	G	T	2.465e^-5	0.055	INTRON Ca-P60A
3R	3858792	3R_3858792_SNP [dm3] 3R_8033070_SNP [dm6]	A	T	2.468e^-5	0.055	UPSTREAM unc-45 & 1 other DOWNSTREAM CG10903 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14237324	3R_14237324_SNP [dm3] 3R_18411602_SNP [dm6]	A	G	2.477e^-5	0.056	START_GAINED CG10864 UTR_5_PRIME CG10864 INTRON CG31122	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	23444105	3R_23444105_SNP [dm3] 3R_27618383_SNP [dm6]	A	G	2.491e^-5	0.056	INTRON Tusp
3R	21989895	3R_21989895_SNP [dm3] 3R_26164173_SNP [dm6]	C	T	2.502e^-5	0.056	INTERGENIC
3R	22976987	3R_22976987_SNP [dm3] 3R_27151265_SNP [dm6]	C	T	2.510e^-5	0.056	UPSTREAM Men-b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3L	6023596	3L_6023596_SNP [dm3] 3L_6030496_SNP [dm6]	C	T	2.530e^-5	0.056	INTERGENIC
2L	13160016	2L_13160016_SNP [dm3] 2L_13160016_SNP [dm6]	G	T	2.533e^-5	0.056	SYNONYMOUS_CODING Pk34A UPSTREAM CG5204	TF binding site mE1_TFBS_cad
3R	18517490	3R_18517490_SNP [dm3] 3R_22691768_SNP [dm6]	C	T	2.542e^-5	0.057	SYNONYMOUS_CODING Nup133	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	6372295	2R_6372295_SNP [dm3] 2R_10484790_SNP [dm6]	A	G	2.544e^-5	0.057	UTR_5_PRIME pre-lola-G INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	5626723	X_5626723_SNP [dm3] X_5732690_SNP [dm6]	G	T	2.548e^-5	0.057	UPSTREAM CG15773 INTRON CG32758	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25465886	3R_25465886_SNP [dm3] 3R_29640164_SNP [dm6]	T	A	2.549e^-5	0.057	INTRON Dop1R2
3L	12620510	3L_12620510_DEL [dm3] 3L_12627410_DEL [dm6]	TT	T	2.553e^-5	0.057	UPSTREAM CR32111 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5318231	2R_5318231_SNP [dm3] 2R_9430726_SNP [dm6]	A	C	2.565e^-5	0.057	INTRON Pdk
3R	13105259	3R_13105259_SNP [dm3] 3R_17279537_SNP [dm6]	T	C	2.575e^-5	0.057	INTERGENIC
3R	19346198	3R_19346198_SNP [dm3] 3R_23520476_SNP [dm6]	A	T	2.582e^-5	0.057	NON_SYNONYMOUS_CODING CG10177	TF binding site mE1_TFBS_cad
3L	1607425	3L_1607425_SNP [dm3] 3L_1607425_SNP [dm6]	C	T	2.584e^-5	0.057	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23427609	3R_23427609_SNP [dm3] 3R_27601887_SNP [dm6]	T	G	2.586e^-5	0.057	SYNONYMOUS_CODING dsd	TF binding site mE1_TFBS_chinmo
2R	18063578	2R_18063578_SNP [dm3] 2R_22176073_SNP [dm6]	C	T	2.597e^-5	0.057	SYNONYMOUS_CODING CG6758 EXON CR45151	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	13194892	X_13194892_SNP [dm3] X_13300859_SNP [dm6]	T	C	2.604e^-5	0.057	DOWNSTREAM CG1622 INTRON CG1764
X	13194897	X_13194897_SNP [dm3] X_13300864_SNP [dm6]	T	C	2.604e^-5	0.057	DOWNSTREAM CG1622 INTRON CG1764
X	6778889	X_6778889_SNP [dm3] X_6884856_SNP [dm6]	G	C	2.609e^-5	0.057	INTERGENIC
3R	21232531	3R_21232531_INS [dm3] 3R_25406809_INS [dm6]	A	ATACGAACAAAACCA...	2.613e^-5	0.057	INTRON Fur1	TF binding site BDTNP1_TFBS_twi
2L	22606258	2L_22606258_SNP [dm3] 2L_22713526_SNP [dm6]	G	C	2.625e^-5	0.057	INTRON CG40006
2L	22636855	2L_22636855_SNP [dm3] 2L_22744123_SNP [dm6]	G	A	2.631e^-5	0.057	INTRON CG40006
3L	6155681	3L_6155681_SNP [dm3] 3L_6162581_SNP [dm6]	T	A	2.631e^-5	0.057	UPSTREAM CG13296 DOWNSTREAM Cpr65Az & 1 other INTERGENIC
3L	18197305	3L_18197305_SNP [dm3] 3L_18204205_SNP [dm6]	C	A	2.639e^-5	0.057	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	13115107	3R_13115107_SNP [dm3] 3R_17289385_SNP [dm6]	A	T	2.643e^-5	0.057	DOWNSTREAM CR43490 INTERGENIC
3L	6994544	3L_6994544_SNP [dm3] 3L_7001444_SNP [dm6]	C	A	2.646e^-5	0.057	INTRON Mp
X	3745434	X_3745434_SNP [dm3] X_3851401_SNP [dm6]	T	A	2.646e^-5	0.057	INTRON ec
X	3780494	X_3780494_SNP [dm3] X_3886461_SNP [dm6]	G	A	2.646e^-5	0.057	INTRON CG15239
X	3780531	X_3780531_SNP [dm3] X_3886498_SNP [dm6]	G	A	2.646e^-5	0.057	INTRON CG15239
X	3789950	X_3789950_SNP [dm3] X_3895917_SNP [dm6]	A	G	2.646e^-5	0.057	NON_SYNONYMOUS_CODING CG42541	TF binding site mE1_TFBS_chinmo
2R	13764156	2R_13764156_SNP [dm3] 2R_17876651_SNP [dm6]	T	C	2.647e^-5	0.057	DOWNSTREAM CG30325 INTRON Elk
3L	3203906	3L_3203906_SNP [dm3] 3L_3203906_SNP [dm6]	A	G	2.658e^-5	0.057	SYNONYMOUS_CODING CG33159 UPSTREAM CG32271 DOWNSTREAM CG32277 INTRON gry	TF binding site mE1_TFBS_cad
X	12263227	X_12263227_SNP [dm3] X_12369194_SNP [dm6]	A	T	2.659e^-5	0.057	INTERGENIC
3L	1561854	3L_1561854_SNP [dm3] 3L_1561854_SNP [dm6]	G	A	2.663e^-5	0.057	SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	17315862	2R_17315862_SNP [dm3] 2R_21428357_SNP [dm6]	C	G	2.665e^-5	0.057	INTRON Sdc
3L	8702426	3L_8702426_SNP [dm3] 3L_8709326_SNP [dm6]	G	A	2.692e^-5	0.058	INTERGENIC	regulatory region REDfly_CRMs
2R	17128392	2R_17128392_SNP [dm3] 2R_21240887_SNP [dm6]	G	A	2.713e^-5	0.058	INTRON ASPP	TF binding site mE1_TFBS_sens
3L	17240366	3L_17240366_SNP [dm3] 3L_17247266_SNP [dm6]	G	A	2.715e^-5	0.058	INTRON CR43870	transposable element FlyBase
X	5895436	X_5895436_SNP [dm3] X_6001403_SNP [dm6]	T	G	2.716e^-5	0.058	UPSTREAM CR44498 & 1 other INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17028676	2R_17028676_DEL [dm3] 2R_21141171_DEL [dm6]	AGTTGGGATTTGATTGCATG...	A	2.724e^-5	0.058	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	10846743	3R_10846743_SNP [dm3] 3R_15021021_SNP [dm6]	C	G	2.725e^-5	0.058	INTERGENIC
2R	14556124	2R_14556124_SNP [dm3] 2R_18668619_SNP [dm6]	T	A	2.738e^-5	0.058	INTRON edl
2R	12982775	2R_12982775_SNP [dm3] 2R_17095270_SNP [dm6]	T	A	2.745e^-5	0.058	INTRON GstS1	TF binding site mE1_TFBS_cad
3L	9283385	3L_9283385_INS [dm3] 3L_9290285_INS [dm6]	T	TC	2.750e^-5	0.059	INTERGENIC
3L	5728013	3L_5728013_SNP [dm3] 3L_5734913_SNP [dm6]	T	G	2.754e^-5	0.059	INTRON sif
3R	22883219	3R_22883219_SNP [dm3] 3R_27057497_SNP [dm6]	G	A	2.758e^-5	0.059	DOWNSTREAM Nep5 & 1 other INTRON RYa-R
3L	5230774	3L_5230774_SNP [dm3] 3L_5237674_SNP [dm6]	T	A	2.764e^-5	0.059	INTRON shep
3L	7390574	3L_7390574_SNP [dm3] 3L_7397474_SNP [dm6]	A	C	2.770e^-5	0.059	UPSTREAM CG8562 INTRON CG32379
3R	6180438	3R_6180438_SNP [dm3] 3R_10354716_SNP [dm6]	T	C	2.794e^-5	0.059	INTRON jumu	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	2440188	3R_2440188_SNP [dm3] 3R_6614466_SNP [dm6]	C	T	2.797e^-5	0.059	INTERGENIC
3L	5815403	3L_5815403_SNP [dm3] 3L_5822303_SNP [dm6]	T	A	2.800e^-5	0.059	INTRON vn
2R	11404445	2R_11404445_SNP [dm3] 2R_15516940_SNP [dm6]	G	A	2.810e^-5	0.059	UTR_3_PRIME Khc-73 DOWNSTREAM Khc-73
2L	8984052	2L_8984052_SNP [dm3] 2L_8984052_SNP [dm6]	G	A	2.821e^-5	0.059	INTRON CG13101
2L	8984668	2L_8984668_DEL [dm3] 2L_8984668_DEL [dm6]	GTTTG	G	2.821e^-5	0.059	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8985236	2L_8985236_SNP [dm3] 2L_8985236_SNP [dm6]	A	G	2.821e^-5	0.059	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	14506617	2R_14506617_SNP [dm3] 2R_18619112_SNP [dm6]	C	T	2.821e^-5	0.059	DOWNSTREAM CG5327 INTRON CG5493	TF binding site BDTNP1_TFBS_z
2R	18063374	2R_18063374_SNP [dm3] 2R_22175869_SNP [dm6]	A	T	2.821e^-5	0.059	SYNONYMOUS_CODING CG6758 EXON CR45151	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	14577952	3R_14577952_SNP [dm3] 3R_18752230_SNP [dm6]	C	T	2.821e^-5	0.059	NON_SYNONYMOUS_CODING CG14299
3R	26130789	3R_26130789_SNP [dm3] 3R_30305067_SNP [dm6]	C	G	2.821e^-5	0.059	DOWNSTREAM CG34300 INTRON hdc
3R	9759172	3R_9759172_SNP [dm3] 3R_13933450_SNP [dm6]	G	C	2.821e^-5	0.059	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	4979404	2R_4979404_SNP [dm3] 2R_9091899_SNP [dm6]	G	T	2.844e^-5	0.059	UPSTREAM CG8080 DOWNSTREAM CG13741 INTRON CG8080
2R	9165771	2R_9165771_SNP [dm3] 2R_13278266_SNP [dm6]	G	A	2.864e^-5	0.06	INTRON Dh31-R
2L	16893912	2L_16893912_SNP [dm3] 2L_16893912_SNP [dm6]	G	A	2.867e^-5	0.06	SYNONYMOUS_CODING tweek	TF binding site mE1_TFBS_HSA
3L	5788512	3L_5788512_SNP [dm3] 3L_5795412_SNP [dm6]	T	C	2.876e^-5	0.06	INTRON Tektin-C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13130823	2L_13130823_SNP [dm3] 2L_13130823_SNP [dm6]	T	C	2.913e^-5	0.061	SPLICE_SITE_REGION CG5122 SYNONYMOUS_CODING CG5122
3R	22462921	3R_22462921_SNP [dm3] 3R_26637199_SNP [dm6]	T	C	2.927e^-5	0.061	SYNONYMOUS_CODING TwdlS
2R	4283277	2R_4283277_DEL [dm3] 2R_8395772_DEL [dm6]	AATCCAATC	A	2.928e^-5	0.061	UTR_3_PRIME pdm3 DOWNSTREAM CG2121
X	21853705	X_21853705_SNP [dm3] X_22451869_SNP [dm6]	C	A	2.948e^-5	0.061	UTR_3_PRIME wap DOWNSTREAM wap & 1 other
3L	3302358	3L_3302358_SNP [dm3] 3L_3302358_SNP [dm6]	C	T	2.955e^-5	0.061	UTR_5_PRIME CG14968 INTRON CG14968	TF binding site mE1_TFBS_sens
2L	1887323	2L_1887323_SNP [dm3] 2L_1887323_SNP [dm6]	G	A	2.960e^-5	0.061	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6312504	2L_6312504_SNP [dm3] 2L_6312504_SNP [dm6]	T	C	2.968e^-5	0.061	INTRON Ddr
3L	1269679	3L_1269679_SNP [dm3] 3L_1269679_SNP [dm6]	G	T	2.971e^-5	0.061	INTRON CG9134
3L	1272016	3L_1272016_SNP [dm3] 3L_1272016_SNP [dm6]	G	A	2.971e^-5	0.061	INTRON CG9134	TF binding site mE1_TFBS_cad
3L	1272359	3L_1272359_SNP [dm3] 3L_1272359_SNP [dm6]	G	A	2.971e^-5	0.061	INTRON CG9134	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1272417	3L_1272417_SNP [dm3] 3L_1272417_SNP [dm6]	G	A	2.971e^-5	0.061	INTRON CG9134	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1272450	3L_1272450_SNP [dm3] 3L_1272450_SNP [dm6]	T	A	2.971e^-5	0.061	INTRON CG9134	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1272484	3L_1272484_SNP [dm3] 3L_1272484_SNP [dm6]	C	A	2.971e^-5	0.061	INTRON CG9134	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	7989313	X_7989313_SNP [dm3] X_8095280_SNP [dm6]	A	T	2.971e^-5	0.061	UTR_3_PRIME CG2258 DOWNSTREAM CG2258
4	135573	4_135573_DEL [dm3] 4_114947_DEL [dm6]	AACTTA	C	2.972e^-5	0.061	DOWNSTREAM Ank & 1 other INTERGENIC	transposable element FlyBase
2R	11276299	2R_11276299_SNP [dm3] 2R_15388794_SNP [dm6]	C	T	2.982e^-5	0.061	DOWNSTREAM SRPK INTERGENIC
3R	24455121	3R_24455121_SNP [dm3] 3R_28629399_SNP [dm6]	T	C	2.988e^-5	0.061	INTRON CG10011
2R	6372283	2R_6372283_SNP [dm3] 2R_10484778_SNP [dm6]	G	A	2.989e^-5	0.061	UTR_5_PRIME pre-lola-G INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	4860560	3L_4860560_SNP [dm3] 3L_4860560_SNP [dm6]	G	C	2.996e^-5	0.061	UPSTREAM CG17150 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	13970824	3L_13970824_SNP [dm3] 3L_13977724_SNP [dm6]	A	T	3.005e^-5	0.061	UTR_3_PRIME Hsc70-1 DOWNSTREAM CG17364
3R	4416628	3R_4416628_SNP [dm3] 3R_8590906_SNP [dm6]	C	T	3.011e^-5	0.061	INTRON 5-HT2B
X	4251904	X_4251904_SNP [dm3] X_4357871_SNP [dm6]	C	A	3.016e^-5	0.061	SYNONYMOUS_CODING norpA
X	5951033	X_5951033_SNP [dm3] X_6057000_SNP [dm6]	T	G	3.017e^-5	0.061	INTRON CG5921	TF binding site BDTNP1_TFBS_twi
3R	25465834	3R_25465834_SNP [dm3] 3R_29640112_SNP [dm6]	C	A	3.018e^-5	0.061	INTRON Dop1R2
2R	17124116	2R_17124116_SNP [dm3] 2R_21236611_SNP [dm6]	C	T	3.019e^-5	0.061	INTRON ASPP	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6680325	3R_6680325_SNP [dm3] 3R_10854603_SNP [dm6]	A	T	3.023e^-5	0.061	UPSTREAM CG4511 & 1 other DOWNSTREAM CG4565 INTRON CG4511	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3R	6687266	3R_6687266_SNP [dm3] 3R_10861544_SNP [dm6]	C	G	3.033e^-5	0.061	NON_SYNONYMOUS_CODING CG6574	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4702340	2L_4702340_SNP [dm3] 2L_4702340_SNP [dm6]	A	C	3.033e^-5	0.061	UPSTREAM Taf12L INTRON CG34351
3R	27341274	3R_27341274_SNP [dm3] 3R_31515552_SNP [dm6]	C	A	3.035e^-5	0.061	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	5674723	2R_5674723_SNP [dm3] 2R_9787218_SNP [dm6]	T	A	3.043e^-5	0.061	INTRON CG1688
2R	5674737	2R_5674737_SNP [dm3] 2R_9787232_SNP [dm6]	C	G	3.043e^-5	0.061	INTRON CG1688
2R	5674747	2R_5674747_SNP [dm3] 2R_9787242_SNP [dm6]	G	A	3.043e^-5	0.061	INTRON CG1688
2R	5674756	2R_5674756_SNP [dm3] 2R_9787251_SNP [dm6]	T	C	3.043e^-5	0.061	INTRON CG1688
2R	5674758	2R_5674758_SNP [dm3] 2R_9787253_SNP [dm6]	A	C	3.043e^-5	0.061	INTRON CG1688
2R	5674763	2R_5674763_DEL [dm3] 2R_9787258_DEL [dm6]	GT	G	3.043e^-5	0.061	INTRON CG1688
2R	5674772	2R_5674772_SNP [dm3] 2R_9787267_SNP [dm6]	G	A	3.043e^-5	0.061	INTRON CG1688
2R	5674774	2R_5674774_SNP [dm3] 2R_9787269_SNP [dm6]	T	C	3.043e^-5	0.061	INTRON CG1688
3L	15165036	3L_15165036_SNP [dm3] 3L_15171936_SNP [dm6]	T	C	3.048e^-5	0.061	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23313031	3R_23313031_SNP [dm3] 3R_27487309_SNP [dm6]	C	T	3.056e^-5	0.061	UPSTREAM Gr98a INTERGENIC
2L	18216851	2L_18216851_SNP [dm3] 2L_18216851_SNP [dm6]	A	G	3.061e^-5	0.061	INTRON CG42750
3R	18649132	3R_18649132_SNP [dm3] 3R_22823410_SNP [dm6]	A	G	3.063e^-5	0.061	DOWNSTREAM CR44350 INTERGENIC
3L	16297459	3L_16297459_SNP [dm3] 3L_16304359_SNP [dm6]	T	A	3.080e^-5	0.061	DOWNSTREAM CG13043 INTRON CG43249	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	5692639	3L_5692639_SNP [dm3] 3L_5699539_SNP [dm6]	C	G	3.080e^-5	0.061	INTRON sif	TF binding site mE1_TFBS_chinmo
3R	19357118	3R_19357118_SNP [dm3] 3R_23531396_SNP [dm6]	T	A	3.083e^-5	0.061	UPSTREAM CG10175 INTERGENIC
3R	19357223	3R_19357223_SNP [dm3] 3R_23531501_SNP [dm6]	A	T	3.083e^-5	0.061	UPSTREAM CG10175 INTERGENIC
3R	6607506	3R_6607506_SNP [dm3] 3R_10781784_SNP [dm6]	C	T	3.090e^-5	0.061	NON_SYNONYMOUS_CODING CG42633 DOWNSTREAM Desi & 1 other	TF binding site mE1_TFBS_sens
3R	24453653	3R_24453653_SNP [dm3] 3R_28627931_SNP [dm6]	A	T	3.105e^-5	0.061	INTRON CG10011
3R	20472372	3R_20472372_SNP [dm3] 3R_24646650_SNP [dm6]	G	A	3.111e^-5	0.061	INTRON puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12176095	3L_12176095_SNP [dm3] 3L_12182995_SNP [dm6]	G	A	3.113e^-5	0.061	UTR_3_PRIME CAH2
X	3448875	X_3448875_SNP [dm3] X_3554842_SNP [dm6]	A	C	3.119e^-5	0.061	INTRON CG32791
3L	13241894	3L_13241894_SNP [dm3] 3L_13248794_SNP [dm6]	A	G	3.139e^-5	0.061	UPSTREAM tRNA:D2:69F & 1 other INTRON caps
3L	1390255	3L_1390255_SNP [dm3] 3L_1390255_SNP [dm6]	A	C	3.139e^-5	0.061	INTRON Ptp61F
3R	22908605	3R_22908605_SNP [dm3] 3R_27082883_SNP [dm6]	T	C	3.139e^-5	0.061	DOWNSTREAM Cpr97Ea & 1 other INTERGENIC	TF binding site mE1_TFBS_D
3R	22961653	3R_22961653_SNP [dm3] 3R_27135931_SNP [dm6]	G	C	3.139e^-5	0.061	INTRON CG6051	TF binding site mE1_TFBS_inv
3R	22963555	3R_22963555_SNP [dm3] 3R_27137833_SNP [dm6]	A	G	3.139e^-5	0.061	INTRON CG6051
3R	22964020	3R_22964020_SNP [dm3] 3R_27138298_SNP [dm6]	C	A	3.139e^-5	0.061	INTRON CG6051
3R	22964021	3R_22964021_SNP [dm3] 3R_27138299_SNP [dm6]	G	A	3.139e^-5	0.061	INTRON CG6051
3R	22965713	3R_22965713_SNP [dm3] 3R_27139991_SNP [dm6]	T	C	3.139e^-5	0.061	INTRON CG6051	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22973999	3R_22973999_SNP [dm3] 3R_27148277_SNP [dm6]	A	G	3.139e^-5	0.061	INTRON CG6051	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22974322	3R_22974322_SNP [dm3] 3R_27148600_SNP [dm6]	A	G	3.139e^-5	0.061	INTRON CG6051	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22974353	3R_22974353_SNP [dm3] 3R_27148631_SNP [dm6]	T	G	3.139e^-5	0.061	INTRON CG6051	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22974722	3R_22974722_SNP [dm3] 3R_27149000_SNP [dm6]	A	G	3.139e^-5	0.061	INTRON CG6051	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22974997	3R_22974997_SNP [dm3] 3R_27149275_SNP [dm6]	C	G	3.139e^-5	0.061	INTRON CG6051	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22976859	3R_22976859_SNP [dm3] 3R_27151137_SNP [dm6]	C	T	3.139e^-5	0.061	UPSTREAM Men-b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	22977238	3R_22977238_SNP [dm3] 3R_27151516_SNP [dm6]	A	G	3.139e^-5	0.061	UPSTREAM Men-b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	22977578	3R_22977578_SNP [dm3] 3R_27151856_SNP [dm6]	G	A	3.139e^-5	0.061	UTR_5_PRIME Men-b UPSTREAM CG6051	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	23297534	3R_23297534_SNP [dm3] 3R_27471812_SNP [dm6]	G	A	3.139e^-5	0.061	INTERGENIC
3R	23298715	3R_23298715_SNP [dm3] 3R_27472993_SNP [dm6]	T	G	3.139e^-5	0.061	INTERGENIC
2R	11276363	2R_11276363_SNP [dm3] 2R_15388858_SNP [dm6]	C	T	3.151e^-5	0.061	INTERGENIC
X	19138745	X_19138745_SNP [dm3] X_19244712_SNP [dm6]	C	T	3.155e^-5	0.061	DOWNSTREAM CG7992 INTRON CG7889	TF binding site mE1_TFBS_chinmo
2R	17034671	2R_17034671_SNP [dm3] 2R_21147166_SNP [dm6]	C	T	3.165e^-5	0.061	SYNONYMOUS_CODING Hmg-2 DOWNSTREAM CG15657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22446101	3R_22446101_SNP [dm3] 3R_26620379_SNP [dm6]	T	C	3.187e^-5	0.061	DOWNSTREAM TwdlP & 1 other INTERGENIC	TF binding site mE1_TFBS_sbb
2R	17954764	2R_17954764_SNP [dm3] 2R_22067259_SNP [dm6]	C	A	3.190e^-5	0.061	SYNONYMOUS_CODING CG44249 UTR_5_PRIME Snp INTRON Snp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	2792702	3R_2792702_SNP [dm3] 3R_6966980_SNP [dm6]	T	G	3.195e^-5	0.061	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15465631	2L_15465631_SNP [dm3] 2L_15465631_SNP [dm6]	T	C	3.195e^-5	0.061	INTERGENIC
2R	11277360	2R_11277360_SNP [dm3] 2R_15389855_SNP [dm6]	T	G	3.205e^-5	0.061	INTERGENIC
2L	8186050	2L_8186050_SNP [dm3] 2L_8186050_SNP [dm6]	G	C	3.209e^-5	0.061	INTRON Piezo
2R	14556129	2R_14556129_SNP [dm3] 2R_18668624_SNP [dm6]	C	T	3.234e^-5	0.062	INTRON edl
3R	18871562	3R_18871562_SNP [dm3] 3R_23045840_SNP [dm6]	A	C	3.243e^-5	0.062	SYNONYMOUS_CODING CG17121
2L	5494818	2L_5494818_SNP [dm3] 2L_5494818_SNP [dm6]	A	G	3.245e^-5	0.062	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8984978	2L_8984978_SNP [dm3] 2L_8984978_SNP [dm6]	G	A	3.247e^-5	0.062	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14574407	3R_14574407_SNP [dm3] 3R_18748685_SNP [dm6]	G	A	3.254e^-5	0.062	NON_SYNONYMOUS_CODING gwl	TF binding site mE1_TFBS_cad
3R	19476353	3R_19476353_SNP [dm3] 3R_23650631_SNP [dm6]	A	T	3.264e^-5	0.062	INTRON CG31145
3R	20001773	3R_20001773_SNP [dm3] 3R_24176051_SNP [dm6]	C	T	3.265e^-5	0.062	INTRON CG13606
3L	8354457	3L_8354457_SNP [dm3] 3L_8361357_SNP [dm6]	A	G	3.272e^-5	0.062	UPSTREAM Idh INTERGENIC
2R	17130893	2R_17130893_SNP [dm3] 2R_21243388_SNP [dm6]	G	A	3.275e^-5	0.062	INTRON ASPP
2R	5656348	2R_5656348_SNP [dm3] 2R_9768843_SNP [dm6]	A	G	3.280e^-5	0.062	INTRON CG1688	TF binding site mE1_TFBS_HSA
3R	17767377	3R_17767377_SNP [dm3] 3R_21941655_SNP [dm6]	A	T	3.283e^-5	0.062	INTERGENIC
2L	12554625	2L_12554625_SNP [dm3] 2L_12554625_SNP [dm6]	A	T	3.290e^-5	0.062	INTERGENIC
3L	4860359	3L_4860359_SNP [dm3] 3L_4860359_SNP [dm6]	A	G	3.296e^-5	0.062	UTR_5_PRIME CG32235 UPSTREAM CG17150	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	4917382	2R_4917382_SNP [dm3] 2R_9029877_SNP [dm6]	G	A	3.314e^-5	0.063	INTRON CG8170
3R	22160232	3R_22160232_DEL [dm3] 3R_26334510_DEL [dm6]	AAGACAAAGTGGTTTTCTTT...	A	3.323e^-5	0.063	INTRON CG33970
3L	3246775	3L_3246775_SNP [dm3] 3L_3246775_SNP [dm6]	C	T	3.325e^-5	0.063	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8244125	3L_8244125_SNP [dm3] 3L_8251025_SNP [dm6]	T	G	3.326e^-5	0.063	INTRON Dscam4
3R	14496229	3R_14496229_SNP [dm3] 3R_18670507_SNP [dm6]	G	T	3.341e^-5	0.063	INTRON CG7702	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17034635	2R_17034635_SNP [dm3] 2R_21147130_SNP [dm6]	G	A	3.346e^-5	0.063	SYNONYMOUS_CODING Hmg-2 DOWNSTREAM CG15657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25936646	3R_25936646_SNP [dm3] 3R_30110924_SNP [dm6]	C	A	3.353e^-5	0.063	INTRON sima
3R	16580473	3R_16580473_SNP [dm3] 3R_20754751_SNP [dm6]	A	C	3.380e^-5	0.063	INTRON CG42322
2L	22595141	2L_22595141_SNP [dm3] 2L_22702409_SNP [dm6]	A	G	3.382e^-5	0.063	INTRON CG40006
2L	22606465	2L_22606465_SNP [dm3] 2L_22713733_SNP [dm6]	G	A	3.382e^-5	0.063	INTRON CG40006
2L	22606841	2L_22606841_SNP [dm3] 2L_22714109_SNP [dm6]	A	G	3.402e^-5	0.064	INTRON CG40006
2L	9388619	2L_9388619_SNP [dm3] 2L_9388619_SNP [dm6]	A	G	3.426e^-5	0.064	INTRON Shawl & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8553517	3L_8553517_SNP [dm3] 3L_8560417_SNP [dm6]	C	G	3.431e^-5	0.064	INTRON rhea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24599729	3R_24599729_SNP [dm3] 3R_28774007_SNP [dm6]	G	T	3.438e^-5	0.064	INTERGENIC
3R	23249500	3R_23249500_SNP [dm3] 3R_27423778_SNP [dm6]	G	A	3.442e^-5	0.064	INTRON side
3R	26003031	3R_26003031_SNP [dm3] 3R_30177309_SNP [dm6]	G	A	3.446e^-5	0.064	SYNONYMOUS_CODING CG1983 UPSTREAM CG15530

By genomic position
Variant impact
Gene name

Microbiota_OTU044 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results