DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.586e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.02423
In_3R_Mo	0.06437

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1773 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	10221094	3L_10221094_SNP [dm3] 3L_10227994_SNP [dm6]	A	T	1.127e^-6	0.615	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	19072143	3L_19072143_SNP [dm3] 3L_19079043_SNP [dm6]	C	A	1.206e^-6	0.615	INTRON Mkp3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17341520	2R_17341520_SNP [dm3] 2R_21454015_SNP [dm6]	T	G	1.721e^-6	0.615	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3L	105174	3L_105174_SNP [dm3] 3L_105174_SNP [dm6]	C	T	2.808e^-6	0.615	INTERGENIC
X	19197180	X_19197180_SNP [dm3] X_19303147_SNP [dm6]	A	T	3.351e^-6	0.615	INTRON CG8051
X	19197185	X_19197185_SNP [dm3] X_19303152_SNP [dm6]	G	C	3.351e^-6	0.615	INTRON CG8051
X	19197275	X_19197275_DEL [dm3] X_19303242_DEL [dm6]	GTAA	G	3.351e^-6	0.615	INTRON CG8051
X	4441850	X_4441850_SNP [dm3] X_4547817_SNP [dm6]	A	G	3.535e^-6	0.615	SYNONYMOUS_CODING Usf INTRON CR32773	TF binding site mE1_TFBS_sens
3R	5039341	3R_5039341_SNP [dm3] 3R_9213619_SNP [dm6]	A	G	3.635e^-6	0.615	INTRON pum	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	1805958	2R_1805958_DEL [dm3] 2R_5918453_DEL [dm6]	GTCCGTGAGTGGCG...	G	3.980e^-6	0.615	INTRON CG43366
X	19197213	X_19197213_SNP [dm3] X_19303180_SNP [dm6]	T	A	4.159e^-6	0.615	INTRON CG8051
X	15794609	X_15794609_SNP [dm3] X_15900576_SNP [dm6]	A	C	4.765e^-6	0.615	INTRON shi
3L	9835345	3L_9835345_DEL [dm3] 3L_9842245_DEL [dm6]	CCATCT	C	5.016e^-6	0.615	INTRON RasGAP1
3L	16248171	3L_16248171_DEL [dm3] 3L_16255071_DEL [dm6]	GGACGAG	G	5.484e^-6	0.615	DOWNSTREAM CG13054 INTERGENIC
3L	4357626	3L_4357626_SNP [dm3] 3L_4357626_SNP [dm6]	A	G	6.541e^-6	0.615	INTRON Cip4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10221101	3L_10221101_SNP [dm3] 3L_10228001_SNP [dm6]	C	G	7.003e^-6	0.615	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	9530934	3R_9530934_SNP [dm3] 3R_13705212_SNP [dm6]	G	T	8.129e^-6	0.615	INTRON Adgf-D
3R	9574975	3R_9574975_SNP [dm3] 3R_13749253_SNP [dm6]	T	A	8.174e^-6	0.615	INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16899518	X_16899518_SNP [dm3] X_17005485_SNP [dm6]	G	T	8.608e^-6	0.615	INTRON CG45002	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	3109170	2L_3109170_SNP [dm3] 2L_3109170_SNP [dm6]	G	A	8.921e^-6	0.615	UPSTREAM PpD6 INTRON toc	TF binding site mE1_TFBS_inv
3R	25451499	3R_25451499_SNP [dm3] 3R_29625777_SNP [dm6]	A	G	8.961e^-6	0.615	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	9583715	3R_9583715_SNP [dm3] 3R_13757993_SNP [dm6]	C	A	9.332e^-6	0.615	INTRON CG34383
2L	11308479	2L_11308479_INS [dm3] 2L_11308479_INS [dm6]	G	GG	9.402e^-6	0.615	DOWNSTREAM CR43721 INTERGENIC
3R	9574949	3R_9574949_SNP [dm3] 3R_13749227_SNP [dm6]	A	G	9.556e^-6	0.615	INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13835421	3R_13835421_SNP [dm3] 3R_18009699_SNP [dm6]	G	T	9.677e^-6	0.615	INTRON cpo
3L	12173911	3L_12173911_SNP [dm3] 3L_12180811_SNP [dm6]	C	T	9.771e^-6	0.615	INTRON CAH2
3R	9530674	3R_9530674_SNP [dm3] 3R_13704952_SNP [dm6]	T	C	9.830e^-6	0.615	INTRON Adgf-D
3L	76712	3L_76712_SNP [dm3] 3L_76712_SNP [dm6]	A	C	9.973e^-6	0.615	INTERGENIC
X	5026239	X_5026239_SNP [dm3] X_5132206_SNP [dm6]	A	C	9.996e^-6	0.615	SYNONYMOUS_CODING Rpn13R INTRON rg & 1 other
3L	1463180	3L_1463180_SNP [dm3] 3L_1463180_SNP [dm6]	C	T	1.052e^-5	0.615	UPSTREAM CR44842 & 1 other INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	3869604	3L_3869604_SNP [dm3] 3L_3869604_SNP [dm6]	T	A	1.055e^-5	0.615	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	7684139	3R_7684139_SNP [dm3] 3R_11858417_SNP [dm6]	C	A	1.087e^-5	0.615	INTRON CG6959
3L	63430	3L_63430_SNP [dm3] 3L_63430_SNP [dm6]	G	A	1.099e^-5	0.615	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16608815	X_16608815_SNP [dm3] X_16714782_SNP [dm6]	T	C	1.124e^-5	0.615	UTR_3_PRIME CG34325 DOWNSTREAM CG13008
3L	9839120	3L_9839120_SNP [dm3] 3L_9846020_SNP [dm6]	G	A	1.289e^-5	0.672	INTRON RasGAP1	TF binding site BDTNP1_TFBS_dl
X	3456866	X_3456866_SNP [dm3] X_3562833_SNP [dm6]	G	T	1.301e^-5	0.672	INTRON CG32791 & 1 other
2L	2965886	2L_2965886_SNP [dm3] 2L_2965886_SNP [dm6]	A	G	1.364e^-5	0.673	UTR_3_PRIME Rbp9
2R	17478087	2R_17478087_SNP [dm3] 2R_21590582_SNP [dm6]	A	G	1.378e^-5	0.673	NON_SYNONYMOUS_CODING CG33225
3L	10221108	3L_10221108_SNP [dm3] 3L_10228008_SNP [dm6]	C	A	1.492e^-5	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	12306884	3L_12306884_SNP [dm3] 3L_12313784_SNP [dm6]	C	T	1.510e^-5	0.673	INTERGENIC
2R	3618313	2R_3618313_SNP [dm3] 2R_7730808_SNP [dm6]	G	A	1.513e^-5	0.673	INTRON CG18812
3L	7501123	3L_7501123_SNP [dm3] 3L_7508023_SNP [dm6]	C	T	1.543e^-5	0.673	INTERGENIC
3R	17009847	3R_17009847_SNP [dm3] 3R_21184125_SNP [dm6]	A	T	1.555e^-5	0.673	INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9571777	3R_9571777_SNP [dm3] 3R_13746055_SNP [dm6]	A	C	1.770e^-5	0.699	SYNONYMOUS_CODING CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9572824	3R_9572824_SNP [dm3] 3R_13747102_SNP [dm6]	T	C	1.770e^-5	0.699	SYNONYMOUS_CODING CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	14249779	2L_14249779_SNP [dm3] 2L_14249779_SNP [dm6]	A	T	1.866e^-5	0.699	INTERGENIC
2L	14249788	2L_14249788_SNP [dm3] 2L_14249788_SNP [dm6]	G	A	1.866e^-5	0.699	INTERGENIC
3L	9646792	3L_9646792_SNP [dm3] 3L_9653692_SNP [dm6]	T	C	1.938e^-5	0.699	INTRON fry & 1 other
3L	4025597	3L_4025597_SNP [dm3] 3L_4025597_SNP [dm6]	T	C	1.977e^-5	0.699	UTR_5_PRIME CG11594 UPSTREAM CG11594 INTRON CG11594
3R	9558471	3R_9558471_SNP [dm3] 3R_13732749_SNP [dm6]	C	T	2.034e^-5	0.699	INTRON CG34383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	830400	3L_830400_SNP [dm3] 3L_830400_SNP [dm6]	C	A	2.035e^-5	0.699	UPSTREAM CR45184 & 1 other DOWNSTREAM snoRNA:Me28S-A771 INTRON CG13900	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9530521	3R_9530521_SNP [dm3] 3R_13704799_SNP [dm6]	C	T	2.109e^-5	0.699	SYNONYMOUS_CODING Adgf-D
X	19133448	X_19133448_INS [dm3] X_19239415_INS [dm6]	A	AAGCCAATA	2.187e^-5	0.699	INTRON CG14196
2L	14249774	2L_14249774_SNP [dm3] 2L_14249774_SNP [dm6]	T	C	2.214e^-5	0.699	INTERGENIC
X	11354722	X_11354722_SNP [dm3] X_11460689_SNP [dm6]	C	G	2.245e^-5	0.699	INTRON CG43155
3L	4722156	3L_4722156_SNP [dm3] 3L_4722156_SNP [dm6]	T	A	2.263e^-5	0.699	INTRON RhoGEF64C
3L	7152104	3L_7152104_SNP [dm3] 3L_7159004_SNP [dm6]	A	G	2.282e^-5	0.699	DOWNSTREAM Dscam2 & 1 other INTERGENIC
3R	9558621	3R_9558621_SNP [dm3] 3R_13732899_SNP [dm6]	A	T	2.320e^-5	0.699	INTRON CG34383	TF binding site BDTNP1_TFBS_dl
3L	5213562	3L_5213562_SNP [dm3] 3L_5220462_SNP [dm6]	C	T	2.328e^-5	0.699	INTRON shep
3R	9573889	3R_9573889_SNP [dm3] 3R_13748167_SNP [dm6]	T	A	2.444e^-5	0.699	INTRON CG34383	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16174539	3L_16174539_SNP [dm3] 3L_16181439_SNP [dm6]	A	T	2.477e^-5	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	62954	3L_62954_SNP [dm3] 3L_62954_SNP [dm6]	G	C	2.482e^-5	0.699	INTERGENIC
3L	18820962	3L_18820962_SNP [dm3] 3L_18827862_SNP [dm6]	C	T	2.487e^-5	0.699	SYNONYMOUS_CODING Cat DOWNSTREAM Indy	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	19793931	2L_19793931_SNP [dm3] 2L_19793931_SNP [dm6]	C	A	2.501e^-5	0.699	UTR_3_PRIME fs_2_ltoPP43 INTRON fs_2_ltoPP43
3R	9557265	3R_9557265_SNP [dm3] 3R_13731543_SNP [dm6]	A	C	2.526e^-5	0.699	INTRON CG34383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18233527	3R_18233527_SNP [dm3] 3R_22407805_SNP [dm6]	T	G	2.556e^-5	0.699	DOWNSTREAM CG13850 INTRON CG13855
3L	69908	3L_69908_SNP [dm3] 3L_69908_SNP [dm6]	A	C	2.570e^-5	0.699	UPSTREAM CG43150 DOWNSTREAM Lsp1gamma & 2 others INTERGENIC
X	15794685	X_15794685_SNP [dm3] X_15900652_SNP [dm6]	A	G	2.590e^-5	0.699	INTRON shi
3L	7050133	3L_7050133_SNP [dm3] 3L_7057033_SNP [dm6]	G	C	2.717e^-5	0.699	INTERGENIC
X	4651672	X_4651672_SNP [dm3] X_4757639_SNP [dm6]	T	C	2.796e^-5	0.699	INTERGENIC
X	5026296	X_5026296_SNP [dm3] X_5132263_SNP [dm6]	T	C	2.856e^-5	0.699	SYNONYMOUS_CODING Rpn13R INTRON rg & 1 other
3R	9571154	3R_9571154_SNP [dm3] 3R_13745432_SNP [dm6]	T	C	2.912e^-5	0.699	INTRON CG34383
3L	12509202	3L_12509202_SNP [dm3] 3L_12516102_SNP [dm6]	T	C	2.922e^-5	0.699	INTRON tral	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	60465	3L_60465_SNP [dm3] 3L_60465_SNP [dm6]	A	G	3.003e^-5	0.699	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	22096918	X_22096918_SNP [dm3] X_22695082_SNP [dm6]	G	A	3.084e^-5	0.699	INTRON CR44997
X	17423175	X_17423175_SNP [dm3] X_17529142_SNP [dm6]	A	G	3.090e^-5	0.699	INTRON CG43658
3L	79409	3L_79409_SNP [dm3] 3L_79409_SNP [dm6]	G	A	3.122e^-5	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	62478	3L_62478_SNP [dm3] 3L_62478_SNP [dm6]	C	T	3.141e^-5	0.699	INTERGENIC
3L	99390	3L_99390_DEL [dm3] 3L_99390_DEL [dm6]	GT	G	3.203e^-5	0.699	INTERGENIC	TF binding site mE1_TFBS_zfh1
3L	12508429	3L_12508429_SNP [dm3] 3L_12515329_SNP [dm6]	T	C	3.224e^-5	0.699	UTR_5_PRIME tral UPSTREAM sti & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2R	11207648	2R_11207648_SNP [dm3] 2R_15320143_SNP [dm6]	G	A	3.226e^-5	0.699	SYNONYMOUS_CODING CG8155
2R	17735549	2R_17735549_SNP [dm3] 2R_21848044_SNP [dm6]	T	G	3.280e^-5	0.699	DOWNSTREAM tRNA:CR30406 INTERGENIC
2R	17735653	2R_17735653_SNP [dm3] 2R_21848148_SNP [dm6]	A	C	3.280e^-5	0.699	DOWNSTREAM tRNA:CR30406 INTERGENIC
2R	17433961	2R_17433961_SNP [dm3] 2R_21546456_SNP [dm6]	C	T	3.311e^-5	0.699	UPSTREAM Egfr INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25286050	3R_25286050_SNP [dm3] 3R_29460328_SNP [dm6]	C	T	3.331e^-5	0.699	INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7392890	3L_7392890_SNP [dm3] 3L_7399790_SNP [dm6]	C	T	3.349e^-5	0.699	UTR_3_PRIME CG8562 UPSTREAM CG18417
2R	19775119	2R_19775119_SNP [dm3] 2R_23887596_SNP [dm6]	A	T	3.457e^-5	0.699	INTRON CG5597
2R	3577993	2R_3577993_SNP [dm3] 2R_7690488_SNP [dm6]	T	C	3.462e^-5	0.699	INTRON CG1399
2L	13134402	2L_13134402_SNP [dm3] 2L_13134402_SNP [dm6]	A	C	3.508e^-5	0.699	SYNONYMOUS_CODING CG5122
3L	76713	3L_76713_SNP [dm3] 3L_76713_SNP [dm6]	T	C	3.529e^-5	0.699	INTERGENIC
X	6553034	X_6553034_SNP [dm3] X_6659001_SNP [dm6]	C	T	3.561e^-5	0.699	NON_SYNONYMOUS_CODING l_1_G0148	TF binding site BDTNP1_TFBS_twi
X	8659750	X_8659750_SNP [dm3] X_8765717_SNP [dm6]	T	C	3.572e^-5	0.699	INTRON Lim1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	86007	3L_86007_DEL [dm3] 3L_86007_DEL [dm6]	GACTTTGCTAG...	G	3.623e^-5	0.699	INTERGENIC
3L	73117	3L_73117_SNP [dm3] 3L_73117_SNP [dm6]	A	T	3.638e^-5	0.699	UPSTREAM CR43988 DOWNSTREAM CG13405 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	521031	2R_521031_INS [dm3] 2R_4633526_INS [dm6]	C	CTATT	3.648e^-5	0.699	INTERGENIC	transposable element FlyBase
2L	3238057	2L_3238057_SNP [dm3] 2L_3238057_SNP [dm6]	C	T	3.682e^-5	0.699	INTERGENIC
2R	6726485	2R_6726485_SNP [dm3] 2R_10838980_SNP [dm6]	A	C	3.713e^-5	0.699	UPSTREAM CG7686 DOWNSTREAM CG30015 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8482403	3R_8482403_SNP [dm3] 3R_12656681_SNP [dm6]	A	G	3.768e^-5	0.699	UTR_5_PRIME CG6225
2R	16040583	2R_16040583_SNP [dm3] 2R_20153078_SNP [dm6]	C	A	3.812e^-5	0.699	INTERGENIC
2R	16040762	2R_16040762_SNP [dm3] 2R_20153257_SNP [dm6]	T	C	3.812e^-5	0.699	INTERGENIC
2R	5155604	2R_5155604_SNP [dm3] 2R_9268099_SNP [dm6]	T	C	3.879e^-5	0.699	INTRON Pkn
X	15201730	X_15201730_SNP [dm3] X_15307697_SNP [dm6]	G	T	3.919e^-5	0.699	INTRON gce
2L	3516377	2L_3516377_SNP [dm3] 2L_3516377_SNP [dm6]	A	G	3.944e^-5	0.699	SYNONYMOUS_CODING CG17593 DOWNSTREAM CG3213	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7682071	3R_7682071_SNP [dm3] 3R_11856349_SNP [dm6]	G	A	3.953e^-5	0.699	INTRON CG6959	TF binding site mE1_TFBS_cad
2R	3729824	2R_3729824_SNP [dm3] 2R_7842319_SNP [dm6]	A	T	4.019e^-5	0.699	INTRON Dgk
3R	9583964	3R_9583964_SNP [dm3] 3R_13758242_SNP [dm6]	G	A	4.079e^-5	0.699	INTRON CG34383	TF binding site mE1_TFBS_cad
2R	16040804	2R_16040804_DEL [dm3] 2R_20153299_DEL [dm6]	GGT	G	4.083e^-5	0.699	INTERGENIC
3R	26429289	3R_26429289_SNP [dm3] 3R_30603567_SNP [dm6]	C	T	4.093e^-5	0.699	NON_SYNONYMOUS_CODING CG31021 UPSTREAM PH4alphaNE3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16759897	X_16759897_SNP [dm3] X_16865864_SNP [dm6]	T	A	4.119e^-5	0.699	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
3L	66513	3L_66513_SNP [dm3] 3L_66513_SNP [dm6]	G	A	4.130e^-5	0.699	UTR_5_PRIME Lsp1gamma	TF binding site mE1_TFBS_sens
2R	17477918	2R_17477918_SNP [dm3] 2R_21590413_SNP [dm6]	G	T	4.185e^-5	0.699	UPSTREAM CG33225 INTRON CG33225
3L	94773	3L_94773_SNP [dm3] 3L_94773_SNP [dm6]	A	G	4.224e^-5	0.699	INTERGENIC
X	849199	X_849199_SNP [dm3] X_955166_SNP [dm6]	G	A	4.305e^-5	0.699	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	4298979	3R_4298979_SNP [dm3] 3R_8473257_SNP [dm6]	C	T	4.343e^-5	0.699	INTRON CG45263	TF binding site BDTNP1_TFBS_prd
2L	19793923	2L_19793923_SNP [dm3] 2L_19793923_SNP [dm6]	T	A	4.411e^-5	0.699	UTR_3_PRIME fs_2_ltoPP43 INTRON fs_2_ltoPP43
2L	19793930	2L_19793930_SNP [dm3] 2L_19793930_SNP [dm6]	A	T	4.411e^-5	0.699	UTR_3_PRIME fs_2_ltoPP43 INTRON fs_2_ltoPP43
X	852317	X_852317_SNP [dm3] X_958284_SNP [dm6]	C	A	4.556e^-5	0.699	INTERGENIC
2L	15741165	2L_15741165_SNP [dm3] 2L_15741165_SNP [dm6]	G	A	4.565e^-5	0.699	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15741168	2L_15741168_SNP [dm3] 2L_15741168_SNP [dm6]	A	G	4.565e^-5	0.699	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	57377	3L_57377_SNP [dm3] 3L_57377_SNP [dm6]	C	T	4.681e^-5	0.699	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16897271	3L_16897271_SNP [dm3] 3L_16904171_SNP [dm6]	T	C	4.695e^-5	0.699	SYNONYMOUS_CODING Lmpt INTRON Lmpt
3L	11293098	3L_11293098_SNP [dm3] 3L_11299998_SNP [dm6]	G	C	4.698e^-5	0.699	INTERGENIC	TF binding site mE1_TFBS_inv
3L	80553	3L_80553_SNP [dm3] 3L_80553_SNP [dm6]	T	G	4.718e^-5	0.699	INTERGENIC
3L	7390249	3L_7390249_SNP [dm3] 3L_7397149_SNP [dm6]	A	C	4.728e^-5	0.699	NON_SYNONYMOUS_CODING CG32379
3L	7390266	3L_7390266_SNP [dm3] 3L_7397166_SNP [dm6]	A	G	4.728e^-5	0.699	NON_SYNONYMOUS_CODING CG32379
3R	7659494	3R_7659494_SNP [dm3] 3R_11833772_SNP [dm6]	G	A	4.737e^-5	0.699	INTRON CG6959	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7392852	3L_7392852_SNP [dm3] 3L_7399752_SNP [dm6]	A	T	4.855e^-5	0.703	UTR_3_PRIME CG8562 UPSTREAM CG18417
2L	9877796	2L_9877796_SNP [dm3] 2L_9877796_SNP [dm6]	T	A	4.873e^-5	0.703	UTR_5_PRIME nAChRalpha6 INTRON nAChRalpha6
3L	5229784	3L_5229784_SNP [dm3] 3L_5236684_SNP [dm6]	A	T	4.875e^-5	0.703	DOWNSTREAM CG4669 INTRON shep
2R	16040582	2R_16040582_SNP [dm3] 2R_20153077_SNP [dm6]	C	A	4.984e^-5	0.713	INTERGENIC
2L	22605766	2L_22605766_DEL [dm3] 2L_22713034_DEL [dm6]	TGCTACTA	T	5.085e^-5	0.717	INTRON CG40006
2R	20102326	2R_20102326_SNP [dm3] 2R_24214803_SNP [dm6]	T	A	5.089e^-5	0.717	UTR_3_PRIME CG30419
3R	19307420	3R_19307420_SNP [dm3] 3R_23481698_SNP [dm6]	T	A	5.202e^-5	0.728	UPSTREAM Ir94f INTERGENIC
3L	12173946	3L_12173946_SNP [dm3] 3L_12180846_SNP [dm6]	A	T	5.316e^-5	0.734	INTRON CAH2
3L	60864	3L_60864_DEL [dm3] 3L_60864_DEL [dm6]	GTTGCTCTATGGGAG...	G	5.335e^-5	0.734	INTERGENIC	TF binding site mE1_TFBS_cad
2L	15741183	2L_15741183_SNP [dm3] 2L_15741183_SNP [dm6]	G	A	5.428e^-5	0.734	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8895277	3L_8895277_SNP [dm3] 3L_8902177_SNP [dm6]	G	A	5.469e^-5	0.734	UPSTREAM TrpA1 INTRON TrpA1
2L	2965922	2L_2965922_SNP [dm3] 2L_2965922_SNP [dm6]	T	C	5.476e^-5	0.734	UTR_3_PRIME Rbp9
2L	7769918	2L_7769918_SNP [dm3] 2L_7769918_SNP [dm6]	G	T	5.487e^-5	0.734	INTRON CG7191
2L	22249055	2L_22249055_SNP [dm3] 2L_22249055_SNP [dm6]	A	C	5.556e^-5	0.738	UPSTREAM Tif-IA INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7388971	3L_7388971_SNP [dm3] 3L_7395871_SNP [dm6]	C	T	5.673e^-5	0.749	SYNONYMOUS_CODING CG8563 UPSTREAM CG32379
2R	3730590	2R_3730590_SNP [dm3] 2R_7843085_SNP [dm6]	G	A	5.742e^-5	0.752	SYNONYMOUS_CODING Dgk	TF binding site mE1_TFBS_chinmo
3L	79204	3L_79204_SNP [dm3] 3L_79204_SNP [dm6]	G	T	5.850e^-5	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	79362	3L_79362_SNP [dm3] 3L_79362_SNP [dm6]	C	T	5.850e^-5	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	521163	2R_521163_SNP [dm3] 2R_4633658_SNP [dm6]	G	T	5.947e^-5	0.763	INTERGENIC	transposable element FlyBase
3R	9560844	3R_9560844_SNP [dm3] 3R_13735122_SNP [dm6]	A	T	6.032e^-5	0.764	UPSTREAM CG34383 INTRON CG34383
3R	13995353	3R_13995353_SNP [dm3] 3R_18169631_SNP [dm6]	T	G	6.057e^-5	0.764	UTR_5_PRIME PP2A-B' INTRON PP2A-B'	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13518121	3L_13518121_DEL [dm3] 3L_13525021_DEL [dm6]	TGGTT	T	6.081e^-5	0.764	UTR_3_PRIME bru-3
2R	16954665	2R_16954665_SNP [dm3] 2R_21067160_SNP [dm6]	A	G	6.153e^-5	0.766	UPSTREAM Cht4 DOWNSTREAM Cht9 INTERGENIC	TF binding site mE1_TFBS_cad
X	20761707	X_20761707_SNP [dm3] X_20890680_SNP [dm6]	T	C	6.173e^-5	0.766	INTRON shakB
3L	7389348	3L_7389348_SNP [dm3] 3L_7396248_SNP [dm6]	C	G	6.292e^-5	0.766	UPSTREAM CG32379 DOWNSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	12173728	3L_12173728_SNP [dm3] 3L_12180628_SNP [dm6]	T	C	6.303e^-5	0.766	INTRON CAH2
3L	19072288	3L_19072288_SNP [dm3] 3L_19079188_SNP [dm6]	C	T	6.356e^-5	0.766	INTRON Mkp3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	19072289	3L_19072289_SNP [dm3] 3L_19079189_SNP [dm6]	C	T	6.356e^-5	0.766	INTRON Mkp3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6254711	2R_6254711_SNP [dm3] 2R_10367206_SNP [dm6]	C	T	6.379e^-5	0.766	INTRON CG42732
3L	4538479	3L_4538479_SNP [dm3] 3L_4538479_SNP [dm6]	A	T	6.422e^-5	0.766	NON_SYNONYMOUS_CODING CG11353 DOWNSTREAM CG32243	TF binding site BDTNP1_TFBS_twi
X	17160470	X_17160470_SNP [dm3] X_17266437_SNP [dm6]	C	T	6.575e^-5	0.772	INTRON f
X	14307174	X_14307174_SNP [dm3] X_14413141_SNP [dm6]	A	G	6.590e^-5	0.772	INTRON dpr8	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	951812	2L_951812_SNP [dm3] 2L_951812_SNP [dm6]	G	A	6.673e^-5	0.772	SYNONYMOUS_CODING CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5026191	X_5026191_SNP [dm3] X_5132158_SNP [dm6]	C	T	6.810e^-5	0.772	SYNONYMOUS_CODING Rpn13R INTRON rg & 1 other
2R	518421	2R_518421_SNP [dm3] 2R_4630916_SNP [dm6]	G	C	6.839e^-5	0.772	INTERGENIC	transposable element FlyBase
X	20761669	X_20761669_SNP [dm3] X_20890642_SNP [dm6]	T	A	6.877e^-5	0.772	INTRON shakB
3L	7390673	3L_7390673_SNP [dm3] 3L_7397573_SNP [dm6]	T	G	7.156e^-5	0.772	UPSTREAM CG8562 INTRON CG32379
3L	7389325	3L_7389325_SNP [dm3] 3L_7396225_SNP [dm6]	T	G	7.197e^-5	0.772	UPSTREAM CG32379 DOWNSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7389330	3L_7389330_SNP [dm3] 3L_7396230_SNP [dm6]	T	A	7.197e^-5	0.772	UPSTREAM CG32379 DOWNSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	3517045	X_3517045_SNP [dm3] X_3623012_SNP [dm6]	T	G	7.198e^-5	0.772	INTRON AstA-R1
X	3517046	X_3517046_SNP [dm3] X_3623013_SNP [dm6]	A	T	7.198e^-5	0.772	INTRON AstA-R1
2L	17961962	2L_17961962_SNP [dm3] 2L_17961962_SNP [dm6]	G	A	7.218e^-5	0.772	DOWNSTREAM btv INTERGENIC
X	8086288	X_8086288_SNP [dm3] X_8192255_SNP [dm6]	T	A	7.232e^-5	0.772	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	13049508	2R_13049508_SNP [dm3] 2R_17162003_SNP [dm6]	C	T	7.273e^-5	0.772	INTERGENIC
3L	100728	3L_100728_SNP [dm3] 3L_100728_SNP [dm6]	T	A	7.298e^-5	0.772	INTERGENIC
2R	8778921	2R_8778921_SNP [dm3] 2R_12891416_SNP [dm6]	G	T	7.333e^-5	0.772	INTRON vg	TF binding site mE1_TFBS_cad
3L	18823274	3L_18823274_SNP [dm3] 3L_18830174_SNP [dm6]	G	A	7.342e^-5	0.772	INTRON Indy	TF binding site mE1_TFBS_inv
X	3985166	X_3985166_INS [dm3] X_4091133_INS [dm6]	C	CCG	7.344e^-5	0.772	UTR_3_PRIME CG43689 DOWNSTREAM CG43689
3R	20601113	3R_20601113_SNP [dm3] 3R_24775391_SNP [dm6]	G	C	7.350e^-5	0.772	INTRON CG42331
3L	12173928	3L_12173928_SNP [dm3] 3L_12180828_SNP [dm6]	T	G	7.352e^-5	0.772	INTRON CAH2
X	3517039	X_3517039_SNP [dm3] X_3623006_SNP [dm6]	A	G	7.363e^-5	0.772	INTRON AstA-R1
2L	5432036	2L_5432036_DEL [dm3] 2L_5432036_DEL [dm6]	CGGATGCGGACAC...	C	7.441e^-5	0.772	UPSTREAM CR43714 EXON CR43713
3L	11292832	3L_11292832_SNP [dm3] 3L_11299732_SNP [dm6]	C	A	7.634e^-5	0.772	INTERGENIC
3R	22405303	3R_22405303_SNP [dm3] 3R_26579581_SNP [dm6]	C	T	7.656e^-5	0.772	INTRON scrib	TF binding site mE1_TFBS_cad
3L	11470986	3L_11470986_SNP [dm3] 3L_11477886_SNP [dm6]	C	T	7.780e^-5	0.772	INTERGENIC
X	3517042	X_3517042_SNP [dm3] X_3623009_SNP [dm6]	A	T	7.867e^-5	0.772	INTRON AstA-R1
3L	11626059	3L_11626059_SNP [dm3] 3L_11632959_SNP [dm6]	A	G	7.883e^-5	0.772	INTRON CG32091 EXON CR45158
3L	11626060	3L_11626060_DEL [dm3] 3L_11632960_DEL [dm6]	GT	G	7.883e^-5	0.772	INTRON CG32091 EXON CR45158
X	4606678	X_4606678_SNP [dm3] X_4712645_SNP [dm6]	A	G	7.884e^-5	0.772	INTRON Proc-R
2R	20378769	2R_20378769_SNP [dm3] 2R_24491246_SNP [dm6]	G	C	7.890e^-5	0.772	DOWNSTREAM CG13579 & 1 other INTERGENIC
2R	7579743	2R_7579743_SNP [dm3] 2R_11692238_SNP [dm6]	G	A	7.906e^-5	0.772	INTRON CG13197
3R	7815330	3R_7815330_SNP [dm3] 3R_11989608_SNP [dm6]	T	C	7.920e^-5	0.772	INTRON mfas
3L	7389328	3L_7389328_SNP [dm3] 3L_7396228_SNP [dm6]	T	C	7.948e^-5	0.772	UPSTREAM CG32379 DOWNSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10562290	2L_10562290_SNP [dm3] 2L_10562290_SNP [dm6]	G	A	7.993e^-5	0.772	INTRON Trim9
2L	3885140	2L_3885140_SNP [dm3] 2L_3885140_SNP [dm6]	C	T	8.074e^-5	0.772	INTRON capu
2L	20113469	2L_20113469_DEL [dm3] 2L_20113469_DEL [dm6]	AG	A	8.228e^-5	0.772	INTERGENIC	transposable element FlyBase
3L	7390683	3L_7390683_SNP [dm3] 3L_7397583_SNP [dm6]	G	C	8.242e^-5	0.772	UPSTREAM CG8562 INTRON CG32379
3L	7390686	3L_7390686_SNP [dm3] 3L_7397586_SNP [dm6]	A	G	8.242e^-5	0.772	UPSTREAM CG8562 INTRON CG32379
3L	7390694	3L_7390694_SNP [dm3] 3L_7397594_SNP [dm6]	G	A	8.242e^-5	0.772	UPSTREAM CG8562 INTRON CG32379
2L	7769936	2L_7769936_SNP [dm3] 2L_7769936_SNP [dm6]	G	A	8.314e^-5	0.772	INTRON CG7191
X	11023792	X_11023792_SNP [dm3] X_11129759_SNP [dm6]	T	G	8.355e^-5	0.772	UTR_3_PRIME Klp10A UPSTREAM Gtp-bp DOWNSTREAM Klp10A	regulatory region REDfly_CRMs
3L	49472	3L_49472_SNP [dm3] 3L_49472_SNP [dm6]	A	G	8.356e^-5	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	3578045	2R_3578045_SNP [dm3] 2R_7690540_SNP [dm6]	T	G	8.572e^-5	0.772	INTRON CG1399
2R	19775120	2R_19775120_SNP [dm3] 2R_23887597_SNP [dm6]	A	T	8.588e^-5	0.772	INTRON CG5597
3L	7057760	3L_7057760_INS [dm3] 3L_7064660_INS [dm6]	G	GTTT	8.729e^-5	0.772	INTRON CG8641
3L	101228	3L_101228_SNP [dm3] 3L_101228_SNP [dm6]	C	A	8.732e^-5	0.772	INTERGENIC
3L	101347	3L_101347_SNP [dm3] 3L_101347_SNP [dm6]	G	C	8.783e^-5	0.772	INTERGENIC
2R	2914849	2R_2914849_SNP [dm3] 2R_7027344_SNP [dm6]	G	A	8.795e^-5	0.772	SYNONYMOUS_CODING Tsp42Ef	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20103770	2L_20103770_SNP [dm3] 2L_20103770_SNP [dm6]	A	G	8.802e^-5	0.772	SYNONYMOUS_CODING CG13970 DOWNSTREAM Kua
2R	13049077	2R_13049077_SNP [dm3] 2R_17161572_SNP [dm6]	C	A	8.840e^-5	0.772	UPSTREAM CG30457 INTERGENIC
2L	4422251	2L_4422251_SNP [dm3] 2L_4422251_SNP [dm6]	T	A	8.840e^-5	0.772	INTRON CG15431
2L	4422254	2L_4422254_SNP [dm3] 2L_4422254_SNP [dm6]	A	T	8.840e^-5	0.772	INTRON CG15431
3L	3522489	3L_3522489_SNP [dm3] 3L_3522489_SNP [dm6]	C	G	8.851e^-5	0.772	DOWNSTREAM CR45043 INTRON Eip63E
X	10674986	X_10674986_SNP [dm3] X_10780953_SNP [dm6]	C	T	8.892e^-5	0.772	UTR_3_PRIME sesB UPSTREAM Ant2 DOWNSTREAM sesB INTRON Ant2
3L	14420578	3L_14420578_SNP [dm3] 3L_14427478_SNP [dm6]	G	A	8.913e^-5	0.772	UPSTREAM bbg INTRON bbg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	9431808	3R_9431808_SNP [dm3] 3R_13606086_SNP [dm6]	A	C	8.921e^-5	0.772	DOWNSTREAM CG9759 INTERGENIC
3L	18653419	3L_18653419_SNP [dm3] 3L_18660319_SNP [dm6]	G	A	8.949e^-5	0.772	INTRON MYPT-75D
3L	2835602	3L_2835602_SNP [dm3] 3L_2835602_SNP [dm6]	C	A	8.965e^-5	0.772	INTRON CG43444
2L	20868556	2L_20868556_SNP [dm3] 2L_20868556_SNP [dm6]	C	T	9.014e^-5	0.772	DOWNSTREAM CG9338 INTRON CG31675
2R	8878183	2R_8878183_DEL [dm3] 2R_12990678_DEL [dm6]	CC	C	9.095e^-5	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	7739054	3R_7739054_SNP [dm3] 3R_11913332_SNP [dm6]	G	T	9.096e^-5	0.772	INTRON Cad87A
2R	1379881	2R_1379881_SNP [dm3] 2R_5492376_SNP [dm6]	G	C	9.173e^-5	0.772	INTRON CG30440
2L	15741180	2L_15741180_SNP [dm3] 2L_15741180_SNP [dm6]	A	T	9.177e^-5	0.772	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5448614	3R_5448614_SNP [dm3] 3R_9622892_SNP [dm6]	C	T	9.185e^-5	0.772	UPSTREAM CG8312 INTRON CG8312	TF binding site mE1_TFBS_cad
2L	12578453	2L_12578453_SNP [dm3] 2L_12578453_SNP [dm6]	A	T	9.248e^-5	0.772	INTERGENIC
3R	9560845	3R_9560845_SNP [dm3] 3R_13735123_SNP [dm6]	A	T	9.339e^-5	0.772	UPSTREAM CG34383 INTRON CG34383
3R	9560849	3R_9560849_SNP [dm3] 3R_13735127_SNP [dm6]	A	G	9.339e^-5	0.772	UPSTREAM CG34383 INTRON CG34383
3R	9560853	3R_9560853_SNP [dm3] 3R_13735131_SNP [dm6]	A	C	9.339e^-5	0.772	UPSTREAM CG34383 INTRON CG34383
3R	2287287	3R_2287287_SNP [dm3] 3R_6461565_SNP [dm6]	A	T	9.348e^-5	0.772	INTERGENIC
2L	736383	2L_736383_SNP [dm3] 2L_736383_SNP [dm6]	G	A	9.374e^-5	0.772	DOWNSTREAM Eaat2 INTERGENIC
3R	26432390	3R_26432390_SNP [dm3] 3R_30606668_SNP [dm6]	G	A	9.562e^-5	0.773	NON_SYNONYMOUS_CODING CG31016 DOWNSTREAM PH4alphaNE3
X	16224824	X_16224824_SNP [dm3] X_16330791_SNP [dm6]	C	T	9.572e^-5	0.773	UPSTREAM CG9919 DOWNSTREAM CG9921 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13049094	2R_13049094_SNP [dm3] 2R_17161589_SNP [dm6]	C	T	9.575e^-5	0.773	UPSTREAM CG30457 INTERGENIC
2L	10895326	2L_10895326_SNP [dm3] 2L_10895326_SNP [dm6]	A	C	9.585e^-5	0.773	EXON CR44491
3L	65177	3L_65177_DEL [dm3] 3L_65177_DEL [dm6]	AAA	A	9.593e^-5	0.773	INTERGENIC
2R	13049125	2R_13049125_SNP [dm3] 2R_17161620_SNP [dm6]	T	C	9.658e^-5	0.774	UPSTREAM CG30457 INTERGENIC
2L	9368514	2L_9368514_SNP [dm3] 2L_9368514_SNP [dm6]	T	C	9.898e^-5	0.789	DOWNSTREAM CG34181 INTERGENIC
2R	2572319	2R_2572319_SNP [dm3] 2R_6684814_SNP [dm6]	T	C	9.926e^-5	0.789	UTR_3_PRIME Tdc2 DOWNSTREAM CG15909 INTRON CG9422
3L	18653420	3L_18653420_SNP [dm3] 3L_18660320_SNP [dm6]	C	A	9.960e^-5	0.789	INTRON MYPT-75D
2L	4400707	2L_4400707_SNP [dm3] 2L_4400707_SNP [dm6]	T	G	1.015e^-4	0.796	UPSTREAM CG33003 DOWNSTREAM l_2_k05819 INTERGENIC
2L	3516407	2L_3516407_SNP [dm3] 2L_3516407_SNP [dm6]	T	C	1.017e^-4	0.796	SYNONYMOUS_CODING CG17593 DOWNSTREAM CG3213	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13079260	2L_13079260_SNP [dm3] 2L_13079260_SNP [dm6]	A	T	1.018e^-4	0.796	INTERGENIC
3R	26432015	3R_26432015_SNP [dm3] 3R_30606293_SNP [dm6]	G	T	1.025e^-4	0.796	NON_SYNONYMOUS_CODING CG31016 DOWNSTREAM PH4alphaNE3
2L	17995164	2L_17995164_SNP [dm3] 2L_17995164_SNP [dm6]	A	G	1.027e^-4	0.796	UPSTREAM CR44767 INTERGENIC
3L	5729730	3L_5729730_SNP [dm3] 3L_5736630_SNP [dm6]	C	T	1.044e^-4	0.802	INTRON sif
2R	6254704	2R_6254704_SNP [dm3] 2R_10367199_SNP [dm6]	A	G	1.047e^-4	0.802	INTRON CG42732
2R	6254708	2R_6254708_SNP [dm3] 2R_10367203_SNP [dm6]	T	C	1.047e^-4	0.802	INTRON CG42732
X	4243285	X_4243285_SNP [dm3] X_4349252_SNP [dm6]	G	A	1.051e^-4	0.802	UTR_5_PRIME norpA
2L	15777803	2L_15777803_SNP [dm3] 2L_15777803_SNP [dm6]	T	G	1.072e^-4	0.802	UPSTREAM CG43760 INTERGENIC	TF binding site mE1_TFBS_kn
2R	19774928	2R_19774928_SNP [dm3] 2R_23887405_SNP [dm6]	T	C	1.074e^-4	0.802	INTRON CG5597
2R	15859899	2R_15859899_SNP [dm3] 2R_19972394_SNP [dm6]	G	A	1.076e^-4	0.802	INTERGENIC
X	669799	X_669799_SNP [dm3] X_775766_SNP [dm6]	A	G	1.086e^-4	0.802	INTRON fz3
2R	17431784	2R_17431784_SNP [dm3] 2R_21544279_SNP [dm6]	C	T	1.087e^-4	0.802	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	101229	3L_101229_SNP [dm3] 3L_101229_SNP [dm6]	C	A	1.088e^-4	0.802	INTERGENIC
3R	9530827	3R_9530827_SNP [dm3] 3R_13705105_SNP [dm6]	C	T	1.091e^-4	0.802	INTRON Adgf-D
3R	9530834	3R_9530834_SNP [dm3] 3R_13705112_SNP [dm6]	A	T	1.091e^-4	0.802	INTRON Adgf-D
3R	9530836	3R_9530836_SNP [dm3] 3R_13705114_SNP [dm6]	C	T	1.091e^-4	0.802	INTRON Adgf-D
3L	9566641	3L_9566641_SNP [dm3] 3L_9573541_SNP [dm6]	G	T	1.097e^-4	0.803	INTRON CG42673
2R	1800061	2R_1800061_SNP [dm3] 2R_5912556_SNP [dm6]	C	G	1.107e^-4	0.803	INTRON CG43366	TF binding site mE1_TFBS_chinmo
3L	12507956	3L_12507956_SNP [dm3] 3L_12514856_SNP [dm6]	G	A	1.107e^-4	0.803	UPSTREAM tral & 1 other INTRON CR45168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
X	17160741	X_17160741_SNP [dm3] X_17266708_SNP [dm6]	A	T	1.109e^-4	0.803	INTRON f
3L	15941126	3L_15941126_SNP [dm3] 3L_15948026_SNP [dm6]	A	T	1.120e^-4	0.808	INTRON Pka-C3
3L	11955668	3L_11955668_SNP [dm3] 3L_11962568_SNP [dm6]	A	T	1.125e^-4	0.808	SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo
3R	6394519	3R_6394519_SNP [dm3] 3R_10568797_SNP [dm6]	G	A	1.133e^-4	0.808	INTRON hth	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	13049096	2R_13049096_SNP [dm3] 2R_17161591_SNP [dm6]	T	A	1.141e^-4	0.808	UPSTREAM CG30457 INTERGENIC
X	6688885	X_6688885_SNP [dm3] X_6794852_SNP [dm6]	C	T	1.142e^-4	0.808	INTRON C3G	TF binding site mE1_TFBS_Kr
2R	13492007	2R_13492007_SNP [dm3] 2R_17604502_SNP [dm6]	A	T	1.145e^-4	0.808	UPSTREAM tRNA:CR30231 DOWNSTREAM tRNA:CR30333 & 2 others INTERGENIC
3L	14420567	3L_14420567_SNP [dm3] 3L_14427467_SNP [dm6]	C	T	1.149e^-4	0.808	UPSTREAM bbg INTRON bbg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	15794712	X_15794712_SNP [dm3] X_15900679_SNP [dm6]	A	G	1.160e^-4	0.808	INTRON shi
X	4196608	X_4196608_SNP [dm3] X_4302575_SNP [dm6]	T	C	1.181e^-4	0.808	UPSTREAM CG12692 INTERGENIC
2L	9392948	2L_9392948_SNP [dm3] 2L_9392948_SNP [dm6]	G	C	1.186e^-4	0.808	INTRON Shawl
3L	4027497	3L_4027497_SNP [dm3] 3L_4027497_SNP [dm6]	A	G	1.192e^-4	0.808	INTRON Gr64a
X	4196619	X_4196619_SNP [dm3] X_4302586_SNP [dm6]	T	C	1.192e^-4	0.808	UPSTREAM CG12692 INTERGENIC
X	22096922	X_22096922_SNP [dm3] X_22695086_SNP [dm6]	G	T	1.195e^-4	0.808	INTRON CR44997
2L	18626477	2L_18626477_SNP [dm3] 2L_18626477_SNP [dm6]	G	A	1.201e^-4	0.808	INTRON MESR3	TF binding site mE1_TFBS_HSA
X	10804773	X_10804773_SNP [dm3] X_10910740_SNP [dm6]	G	C	1.205e^-4	0.808	INTRON CG43901	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11354509	X_11354509_DEL [dm3] X_11460476_DEL [dm6]	TAT	T	1.210e^-4	0.808	INTRON CG43155
2L	9369828	2L_9369828_SNP [dm3] 2L_9369828_SNP [dm6]	G	C	1.212e^-4	0.808	DOWNSTREAM Shawl INTERGENIC
3L	74478	3L_74478_SNP [dm3] 3L_74478_SNP [dm6]	C	A	1.216e^-4	0.808	UTR_3_PRIME CG13405 DOWNSTREAM CG13405	TF binding site mE1_TFBS_HSA
3L	5550622	3L_5550622_SNP [dm3] 3L_5557522_SNP [dm6]	C	T	1.235e^-4	0.808	INTERGENIC
3R	4299218	3R_4299218_SNP [dm3] 3R_8473496_SNP [dm6]	G	T	1.243e^-4	0.808	INTRON CG45263
2L	14374939	2L_14374939_SNP [dm3] 2L_14374939_SNP [dm6]	A	G	1.243e^-4	0.808	INTERGENIC
2R	12506041	2R_12506041_SNP [dm3] 2R_16618536_SNP [dm6]	A	G	1.247e^-4	0.808	INTRON CG5065
2R	12506154	2R_12506154_SNP [dm3] 2R_16618649_SNP [dm6]	A	T	1.247e^-4	0.808	INTRON CG5065
2R	12506166	2R_12506166_SNP [dm3] 2R_16618661_SNP [dm6]	A	C	1.247e^-4	0.808	INTRON CG5065
2R	12506167	2R_12506167_SNP [dm3] 2R_16618662_SNP [dm6]	T	A	1.247e^-4	0.808	INTRON CG5065
2R	12506179	2R_12506179_SNP [dm3] 2R_16618674_SNP [dm6]	C	T	1.247e^-4	0.808	INTRON CG5065
2R	12506183	2R_12506183_MNP [dm3] 2R_16618678_MNP [dm6]	AAG	TTT	1.247e^-4	0.808	INTRON CG5065
2R	12506187	2R_12506187_DEL [dm3] 2R_16618682_DEL [dm6]	ACTATTT	CG	1.247e^-4	0.808	INTRON CG5065
2R	12506201	2R_12506201_SNP [dm3] 2R_16618696_SNP [dm6]	A	T	1.247e^-4	0.808	INTRON CG5065
2R	12506202	2R_12506202_DEL [dm3] 2R_16618697_DEL [dm6]	AGC	A	1.247e^-4	0.808	INTRON CG5065
2L	19792536	2L_19792536_SNP [dm3] 2L_19792536_SNP [dm6]	C	T	1.266e^-4	0.816	SYNONYMOUS_CODING CG10466 UPSTREAM CdGAPr DOWNSTREAM fs_2_ltoPP43	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	9642809	2L_9642809_SNP [dm3] 2L_9642809_SNP [dm6]	T	C	1.267e^-4	0.816	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16290951	X_16290951_SNP [dm3] X_16396918_SNP [dm6]	T	C	1.274e^-4	0.817	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
3R	25451580	3R_25451580_SNP [dm3] 3R_29625858_SNP [dm6]	C	A	1.285e^-4	0.819	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25451581	3R_25451581_SNP [dm3] 3R_29625859_SNP [dm6]	C	A	1.285e^-4	0.819	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	2076568	3L_2076568_SNP [dm3] 3L_2076568_SNP [dm6]	C	A	1.296e^-4	0.822	INTRON sls
2R	9582965	2R_9582965_SNP [dm3] 2R_13695460_SNP [dm6]	T	A	1.299e^-4	0.822	INTRON fas
3L	7120186	3L_7120186_SNP [dm3] 3L_7127086_SNP [dm6]	G	A	1.313e^-4	0.822	SYNONYMOUS_CODING BBS1 DOWNSTREAM CG8629	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4196610	X_4196610_SNP [dm3] X_4302577_SNP [dm6]	T	C	1.316e^-4	0.822	UPSTREAM CG12692 INTERGENIC
3L	16776285	3L_16776285_SNP [dm3] 3L_16783185_SNP [dm6]	A	C	1.316e^-4	0.822	UTR_5_PRIME CG9706 UPSTREAM CG9706 DOWNSTREAM CG9705	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	16864398	3R_16864398_SNP [dm3] 3R_21038676_SNP [dm6]	C	T	1.320e^-4	0.822	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	6010487	2L_6010487_SNP [dm3] 2L_6010487_SNP [dm6]	G	A	1.321e^-4	0.822	SYNONYMOUS_CODING CG9098	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	22096303	X_22096303_SNP [dm3] X_22694467_SNP [dm6]	T	A	1.335e^-4	0.826	INTRON CR44997
3L	51680	3L_51680_SNP [dm3] 3L_51680_SNP [dm6]	T	A	1.336e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	17757444	2R_17757444_SNP [dm3] 2R_21869939_SNP [dm6]	G	A	1.347e^-4	0.829	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16726248	2R_16726248_SNP [dm3] 2R_20838743_SNP [dm6]	A	G	1.361e^-4	0.829	DOWNSTREAM CR44667 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	70051	3L_70051_SNP [dm3] 3L_70051_SNP [dm6]	A	T	1.363e^-4	0.829	UPSTREAM CG43150 DOWNSTREAM CR44511 & 1 other INTERGENIC
2R	6254659	2R_6254659_SNP [dm3] 2R_10367154_SNP [dm6]	C	G	1.368e^-4	0.829	INTRON CG42732
X	8707256	X_8707256_SNP [dm3] X_8813223_SNP [dm6]	C	T	1.371e^-4	0.829	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	93098	3L_93098_SNP [dm3] 3L_93098_SNP [dm6]	A	G	1.372e^-4	0.829	INTERGENIC
3L	7467130	3L_7467130_SNP [dm3] 3L_7474030_SNP [dm6]	T	A	1.378e^-4	0.829	INTERGENIC
3L	82772	3L_82772_DEL [dm3] 3L_82772_DEL [dm6]	TAAATA	AC	1.380e^-4	0.829	INTERGENIC
3L	4159989	3L_4159989_SNP [dm3] 3L_4159989_SNP [dm6]	A	T	1.381e^-4	0.829	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
X	855791	X_855791_DEL [dm3] X_961758_DEL [dm6]	TCAGCAT	T	1.387e^-4	0.83	INTERGENIC
3R	5386235	3R_5386235_INS [dm3] 3R_9560513_INS [dm6]	G	GGAG	1.407e^-4	0.839	UPSTREAM AP-1mu INTRON MBD-like	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15205664	2R_15205664_SNP [dm3] 2R_19318159_SNP [dm6]	A	C	1.416e^-4	0.841	SYNONYMOUS_CODING Rgk1
3R	7674064	3R_7674064_SNP [dm3] 3R_11848342_SNP [dm6]	C	T	1.420e^-4	0.841	INTRON CG6959	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14249686	2L_14249686_SNP [dm3] 2L_14249686_SNP [dm6]	A	G	1.428e^-4	0.842	INTERGENIC
2R	517916	2R_517916_SNP [dm3] 2R_4630411_SNP [dm6]	A	T	1.431e^-4	0.842	INTERGENIC	transposable element FlyBase
3R	7674667	3R_7674667_SNP [dm3] 3R_11848945_SNP [dm6]	A	G	1.441e^-4	0.846	INTRON CG6959
3R	9826447	3R_9826447_SNP [dm3] 3R_14000725_SNP [dm6]	T	G	1.475e^-4	0.847	INTRON rdx	TF binding site BDTNP1_TFBS_dl
3L	4159967	3L_4159967_SNP [dm3] 3L_4159967_SNP [dm6]	G	T	1.486e^-4	0.847	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr
2L	20868578	2L_20868578_SNP [dm3] 2L_20868578_SNP [dm6]	T	C	1.488e^-4	0.847	DOWNSTREAM CG9338 INTRON CG31675
2R	17486818	2R_17486818_SNP [dm3] 2R_21599313_SNP [dm6]	A	C	1.488e^-4	0.847	INTERGENIC
3L	8724603	3L_8724603_SNP [dm3] 3L_8731503_SNP [dm6]	C	T	1.497e^-4	0.847	UPSTREAM Cp16 DOWNSTREAM Cp19 INTERGENIC
3R	20869811	3R_20869811_SNP [dm3] 3R_25044089_SNP [dm6]	C	T	1.505e^-4	0.847	INTRON 5PtaseI
2R	3731714	2R_3731714_SNP [dm3] 2R_7844209_SNP [dm6]	T	C	1.510e^-4	0.847	INTRON Dgk
3L	10220785	3L_10220785_SNP [dm3] 3L_10227685_SNP [dm6]	A	C	1.514e^-4	0.847	INTERGENIC
X	22095799	X_22095799_SNP [dm3] X_22693963_SNP [dm6]	G	T	1.515e^-4	0.847	INTRON CR44997	transposable element FlyBase
3R	9855212	3R_9855212_SNP [dm3] 3R_14029490_SNP [dm6]	T	A	1.522e^-4	0.847	SYNONYMOUS_CODING Cyp6d5 INTRON rdx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
X	11354508	X_11354508_SNP [dm3] X_11460475_SNP [dm6]	A	T	1.524e^-4	0.847	INTRON CG43155
2R	6543657	2R_6543657_SNP [dm3] 2R_10656152_SNP [dm6]	T	C	1.526e^-4	0.847	DOWNSTREAM CR44452 INTERGENIC
3R	2285727	3R_2285727_SNP [dm3] 3R_6460005_SNP [dm6]	T	C	1.528e^-4	0.847	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	73687	3L_73687_SNP [dm3] 3L_73687_SNP [dm6]	A	G	1.531e^-4	0.847	UPSTREAM CR43988 DOWNSTREAM CG13405 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15707823	3L_15707823_SNP [dm3] 3L_15714723_SNP [dm6]	A	C	1.532e^-4	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8371319	2L_8371319_INS [dm3] 2L_8371319_INS [dm6]	A	ATCTA	1.541e^-4	0.847	UPSTREAM CR45341 INTRON CG17292
3R	6350157	3R_6350157_SNP [dm3] 3R_10524435_SNP [dm6]	C	A	1.548e^-4	0.847	INTRON hth	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	1356286	2R_1356286_SNP [dm3] 2R_5468781_SNP [dm6]	T	A	1.549e^-4	0.847	INTRON CG30440
3R	26464996	3R_26464996_SNP [dm3] 3R_30639274_SNP [dm6]	T	A	1.553e^-4	0.847	INTERGENIC
3R	18233498	3R_18233498_SNP [dm3] 3R_22407776_SNP [dm6]	A	C	1.554e^-4	0.847	SPLICE_SITE_REGION CG13855 DOWNSTREAM CG13850 INTRON CG13855
3L	78247	3L_78247_SNP [dm3] 3L_78247_SNP [dm6]	T	G	1.559e^-4	0.847	INTERGENIC	transposable element FlyBase
3L	2699537	3L_2699537_SNP [dm3] 3L_2699537_SNP [dm6]	T	C	1.561e^-4	0.847	INTRON Fife
3L	2699882	3L_2699882_INS [dm3] 3L_2699882_INS [dm6]	C	CCCA	1.561e^-4	0.847	INTRON Fife
3L	2700201	3L_2700201_SNP [dm3] 3L_2700201_SNP [dm6]	A	G	1.561e^-4	0.847	INTRON Fife
3L	2700223	3L_2700223_SNP [dm3] 3L_2700223_SNP [dm6]	A	G	1.561e^-4	0.847	INTRON Fife
3L	2700232	3L_2700232_SNP [dm3] 3L_2700232_SNP [dm6]	T	C	1.561e^-4	0.847	INTRON Fife
X	578361	X_578361_SNP [dm3] X_684328_SNP [dm6]	T	C	1.566e^-4	0.847	INTERGENIC
3L	3993232	3L_3993232_SNP [dm3] 3L_3993232_SNP [dm6]	C	G	1.574e^-4	0.848	UTR_3_PRIME scrt
2R	14547159	2R_14547159_SNP [dm3] 2R_18659654_SNP [dm6]	G	A	1.580e^-4	0.848	NON_SYNONYMOUS_CODING Gint3 UTR_3_PRIME CG42306	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17945372	2L_17945372_SNP [dm3] 2L_17945372_SNP [dm6]	G	A	1.583e^-4	0.848	INTERGENIC
3L	69036	3L_69036_DEL [dm3] 3L_69036_DEL [dm6]	TGCCTTTTCAGATCACCAGA...	T	1.590e^-4	0.85	UPSTREAM CR44510 DOWNSTREAM Lsp1gamma INTERGENIC
2L	16447964	2L_16447964_SNP [dm3] 2L_16447964_SNP [dm6]	A	G	1.617e^-4	0.854	INTRON CG5888 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	16899108	X_16899108_SNP [dm3] X_17005075_SNP [dm6]	T	C	1.622e^-4	0.854	INTRON CG45002
X	16899182	X_16899182_SNP [dm3] X_17005149_SNP [dm6]	C	A	1.622e^-4	0.854	INTRON CG45002
2R	5898401	2R_5898401_SNP [dm3] 2R_10010896_SNP [dm6]	T	C	1.624e^-4	0.854	INTRON Pka-R2
2R	19395044	2R_19395044_SNP [dm3] 2R_23507521_SNP [dm6]	T	C	1.627e^-4	0.854	EXON CR43794
2R	8616111	2R_8616111_SNP [dm3] 2R_12728606_SNP [dm6]	G	A	1.629e^-4	0.854	INTRON CG42663
2L	7769948	2L_7769948_SNP [dm3] 2L_7769948_SNP [dm6]	G	T	1.631e^-4	0.854	INTRON CG7191
3L	10221419	3L_10221419_SNP [dm3] 3L_10228319_SNP [dm6]	G	A	1.635e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	14223622	2L_14223622_INS [dm3] 2L_14223622_INS [dm6]	A	AG	1.649e^-4	0.855	INTRON Dyrk2
X	18104351	X_18104351_SNP [dm3] X_18210318_SNP [dm6]	G	T	1.650e^-4	0.855	NON_SYNONYMOUS_CODING Him DOWNSTREAM CG33639
X	4570133	X_4570133_SNP [dm3] X_4676100_SNP [dm6]	T	C	1.654e^-4	0.855	INTRON rap
3L	7403072	3L_7403072_SNP [dm3] 3L_7409972_SNP [dm6]	G	T	1.655e^-4	0.855	UPSTREAM CR44525 INTERGENIC
2R	12037867	2R_12037867_INS [dm3] 2R_16150362_INS [dm6]	A	AA	1.666e^-4	0.859	UTR_5_PRIME lbk UPSTREAM CG10731	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	19784553	2L_19784553_DEL [dm3] 2L_19784553_DEL [dm6]	ATTAATGATTTTGTGAT...	A	1.677e^-4	0.861	INTRON CdGAPr
2L	14249748	2L_14249748_SNP [dm3] 2L_14249748_SNP [dm6]	C	T	1.703e^-4	0.861	INTERGENIC
3R	9879239	3R_9879239_SNP [dm3] 3R_14053517_SNP [dm6]	G	A	1.707e^-4	0.861	INTERGENIC
3L	6917271	3L_6917271_SNP [dm3] 3L_6924171_SNP [dm6]	G	T	1.714e^-4	0.861	INTERGENIC
2L	1509655	2L_1509655_SNP [dm3] 2L_1509655_SNP [dm6]	C	A	1.734e^-4	0.861	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3R	9558101	3R_9558101_SNP [dm3] 3R_13732379_SNP [dm6]	T	A	1.737e^-4	0.861	INTRON CG34383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	5039530	3R_5039530_SNP [dm3] 3R_9213808_SNP [dm6]	G	A	1.742e^-4	0.861	SYNONYMOUS_CODING pum	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	8378449	2L_8378449_SNP [dm3] 2L_8378449_SNP [dm6]	G	A	1.743e^-4	0.861	SYNONYMOUS_CODING Aats-ala DOWNSTREAM CG17294	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8378533	2L_8378533_SNP [dm3] 2L_8378533_SNP [dm6]	C	T	1.743e^-4	0.861	SYNONYMOUS_CODING Aats-ala DOWNSTREAM CG17294	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3792484	2L_3792484_SNP [dm3] 2L_3792484_SNP [dm6]	T	G	1.743e^-4	0.861	INTRON CG3921
X	16899566	X_16899566_INS [dm3] X_17005533_INS [dm6]	T	TTAAATTCGCTTTACATTTT...	1.747e^-4	0.861	INTRON CG45002	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	16899572	X_16899572_SNP [dm3] X_17005539_SNP [dm6]	A	T	1.747e^-4	0.861	INTRON CG45002	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	16899573	X_16899573_INS [dm3] X_17005540_INS [dm6]	C	CGCTTGAAATATATCCGCAC...	1.747e^-4	0.861	INTRON CG45002	TF binding site mE1_TFBS_HSA
X	16899607	X_16899607_SNP [dm3] X_17005574_SNP [dm6]	C	T	1.747e^-4	0.861	INTRON CG45002	TF binding site mE1_TFBS_HSA
3L	9839050	3L_9839050_SNP [dm3] 3L_9845950_SNP [dm6]	C	T	1.748e^-4	0.861	INTRON RasGAP1
3R	15280517	3R_15280517_SNP [dm3] 3R_19454795_SNP [dm6]	A	C	1.750e^-4	0.861	INTRON CG31221
3R	15280532	3R_15280532_SNP [dm3] 3R_19454810_SNP [dm6]	C	T	1.750e^-4	0.861	INTRON CG31221
3L	11574685	3L_11574685_SNP [dm3] 3L_11581585_SNP [dm6]	A	G	1.755e^-4	0.862	UTR_3_PRIME CG33269 UPSTREAM CG43391 DOWNSTREAM CG33269 & 1 other
X	18430402	X_18430402_SNP [dm3] X_18536369_SNP [dm6]	T	A	1.765e^-4	0.862	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6350151	3R_6350151_SNP [dm3] 3R_10524429_SNP [dm6]	T	C	1.766e^-4	0.862	INTRON hth	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2693336	2L_2693336_SNP [dm3] 2L_2693336_SNP [dm6]	A	G	1.782e^-4	0.866	INTRON CG31690	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5439763	X_5439763_SNP [dm3] X_5545730_SNP [dm6]	C	G	1.783e^-4	0.866	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
4	428402	4_428402_SNP [dm3] 4_407776_SNP [dm6]	C	T	1.794e^-4	0.869	INTERGENIC	transposable element FlyBase
X	8527213	X_8527213_SNP [dm3] X_8633180_SNP [dm6]	A	G	1.804e^-4	0.871	SYNONYMOUS_CODING oc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	13043853	2R_13043853_INS [dm3] 2R_17156348_INS [dm6]	G	GGACTCAGACCTCAG...	1.809e^-4	0.871	UTR_3_PRIME CG17290 DOWNSTREAM CG17287
2L	16063746	2L_16063746_SNP [dm3] 2L_16063746_SNP [dm6]	G	C	1.815e^-4	0.871	INTRON beat-Ia	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	17995135	2L_17995135_SNP [dm3] 2L_17995135_SNP [dm6]	A	C	1.819e^-4	0.871	UPSTREAM CR44767 INTERGENIC
2R	1780461	2R_1780461_SNP [dm3] 2R_5892956_SNP [dm6]	C	G	1.825e^-4	0.871	UPSTREAM CG43366 INTERGENIC
2L	12078907	2L_12078907_SNP [dm3] 2L_12078907_SNP [dm6]	A	C	1.830e^-4	0.871	UPSTREAM CR44591 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	12288788	3L_12288788_SNP [dm3] 3L_12295688_SNP [dm6]	A	G	1.839e^-4	0.871	INTRON CG4328
2L	20105874	2L_20105874_DEL [dm3] 2L_20105874_DEL [dm6]	TATTATTTTTGCACTCAAC...	T	1.842e^-4	0.871	INTERGENIC
2L	20103863	2L_20103863_SNP [dm3] 2L_20103863_SNP [dm6]	A	T	1.842e^-4	0.871	NON_SYNONYMOUS_CODING CG13970 DOWNSTREAM Kua
3L	99433	3L_99433_SNP [dm3] 3L_99433_SNP [dm6]	C	T	1.846e^-4	0.871	INTERGENIC	TF binding site mE1_TFBS_zfh1
3L	5550630	3L_5550630_DEL [dm3] 3L_5557530_DEL [dm6]	GA	G	1.853e^-4	0.871	INTERGENIC
X	19877188	X_19877188_SNP [dm3] X_19983155_SNP [dm6]	C	G	1.860e^-4	0.871	INTERGENIC
2L	7770100	2L_7770100_SNP [dm3] 2L_7770100_SNP [dm6]	T	A	1.863e^-4	0.871	INTRON CG7191
3L	64179	3L_64179_SNP [dm3] 3L_64179_SNP [dm6]	A	C	1.866e^-4	0.871	INTERGENIC
2R	515868	2R_515868_SNP [dm3] 2R_4628363_SNP [dm6]	G	A	1.867e^-4	0.871	INTERGENIC
2R	6336642	2R_6336642_SNP [dm3] 2R_10449137_SNP [dm6]	T	A	1.875e^-4	0.871	DOWNSTREAM Cyp49a1 INTRON Galphao
2R	12373275	2R_12373275_SNP [dm3] 2R_16485770_SNP [dm6]	C	T	1.877e^-4	0.871	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11469448	3L_11469448_SNP [dm3] 3L_11476348_SNP [dm6]	A	G	1.888e^-4	0.874	DOWNSTREAM Vha16-2 INTERGENIC
2L	17937597	2L_17937597_SNP [dm3] 2L_17937597_SNP [dm6]	C	A	1.897e^-4	0.876	INTERGENIC
2R	12456228	2R_12456228_SNP [dm3] 2R_16568723_SNP [dm6]	T	C	1.909e^-4	0.878	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
3L	82289	3L_82289_SNP [dm3] 3L_82289_SNP [dm6]	A	G	1.916e^-4	0.878	INTERGENIC
2L	8390004	2L_8390004_SNP [dm3] 2L_8390004_SNP [dm6]	G	A	1.919e^-4	0.878	UTR_3_PRIME CG42820 UPSTREAM CG42819 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi
2L	18465571	2L_18465571_SNP [dm3] 2L_18465571_SNP [dm6]	T	C	1.942e^-4	0.878	INTRON let-7-C	TF binding site mE1_TFBS_Trl
3L	7548461	3L_7548461_SNP [dm3] 3L_7555361_SNP [dm6]	A	T	1.945e^-4	0.878	DOWNSTREAM CG14837 INTERGENIC
2L	12090463	2L_12090463_INS [dm3] 2L_12090463_INS [dm6]	C	CCATCAGC	1.950e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3L	85622	3L_85622_SNP [dm3] 3L_85622_SNP [dm6]	T	G	1.954e^-4	0.878	INTERGENIC
3L	12896570	3L_12896570_SNP [dm3] 3L_12903470_SNP [dm6]	T	A	1.956e^-4	0.878	NON_SYNONYMOUS_CODING CG32117 UPSTREAM CG12520
4	503111	4_503111_SNP [dm3] 4_482485_SNP [dm6]	T	C	1.957e^-4	0.878	SPLICE_SITE_REGION Asator START_GAINED Asator UTR_5_PRIME Asator UPSTREAM Asator INTRON Asator	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	1002459	3L_1002459_SNP [dm3] 3L_1002459_SNP [dm6]	T	C	1.965e^-4	0.878	INTRON trio
3L	3277237	3L_3277237_SNP [dm3] 3L_3277237_SNP [dm6]	A	C	1.965e^-4	0.878	DOWNSTREAM CG14960 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	3277253	3L_3277253_SNP [dm3] 3L_3277253_SNP [dm6]	G	A	1.965e^-4	0.878	DOWNSTREAM CG14960 INTERGENIC	TF binding site mE1_TFBS_bab1
X	6441238	X_6441238_SNP [dm3] X_6547205_SNP [dm6]	C	T	1.966e^-4	0.878	INTRON CG34417	TF binding site mE1_TFBS_HSA
3L	4025626	3L_4025626_SNP [dm3] 3L_4025626_SNP [dm6]	C	T	1.969e^-4	0.878	UTR_5_PRIME CG11594 UPSTREAM CG11594 INTRON CG11594
2L	10107554	2L_10107554_SNP [dm3] 2L_10107554_SNP [dm6]	A	G	1.983e^-4	0.883	INTRON CG44153 & 1 other
2L	18517368	2L_18517368_DEL [dm3] 2L_18517368_DEL [dm6]	CC	C	2.017e^-4	0.885	UPSTREAM CG10211 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	9540237	3R_9540237_SNP [dm3] 3R_13714515_SNP [dm6]	A	G	2.026e^-4	0.885	UPSTREAM CR34044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	95496	3L_95496_SNP [dm3] 3L_95496_SNP [dm6]	G	A	2.029e^-4	0.885	INTERGENIC
3L	16248488	3L_16248488_SNP [dm3] 3L_16255388_SNP [dm6]	A	G	2.038e^-4	0.885	DOWNSTREAM CG13054 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8282408	2L_8282408_SNP [dm3] 2L_8282408_SNP [dm6]	T	C	2.058e^-4	0.885	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18298775	2L_18298775_SNP [dm3] 2L_18298775_SNP [dm6]	T	G	2.062e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_inv
2R	12373282	2R_12373282_SNP [dm3] 2R_16485777_SNP [dm6]	A	C	2.064e^-4	0.885	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6336235	2R_6336235_SNP [dm3] 2R_10448730_SNP [dm6]	T	C	2.067e^-4	0.885	DOWNSTREAM Cyp49a1 INTRON Galphao
X	3456849	X_3456849_SNP [dm3] X_3562816_SNP [dm6]	G	A	2.067e^-4	0.885	INTRON CG32791 & 1 other
3L	50100	3L_50100_SNP [dm3] 3L_50100_SNP [dm6]	A	G	2.067e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	9647162	3L_9647162_SNP [dm3] 3L_9654062_SNP [dm6]	A	G	2.068e^-4	0.885	INTRON fry & 1 other
2R	15208984	2R_15208984_SNP [dm3] 2R_19321479_SNP [dm6]	T	C	2.077e^-4	0.885	INTRON Rgk1	TF binding site mE1_TFBS_inv
3R	10384707	3R_10384707_SNP [dm3] 3R_14558985_SNP [dm6]	A	C	2.077e^-4	0.885	UPSTREAM Pde6 DOWNSTREAM CG14854 INTERGENIC	insulator Insulator_Class_II.mE01
X	16229806	X_16229806_SNP [dm3] X_16335773_SNP [dm6]	T	A	2.078e^-4	0.885	UPSTREAM Dsp1 INTRON Dsp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D
3L	8899683	3L_8899683_SNP [dm3] 3L_8906583_SNP [dm6]	G	A	2.081e^-4	0.885	SYNONYMOUS_CODING mfr UTR_3_PRIME mfr
3L	8899692	3L_8899692_SNP [dm3] 3L_8906592_SNP [dm6]	T	G	2.081e^-4	0.885	SYNONYMOUS_CODING mfr UTR_3_PRIME mfr
X	8733537	X_8733537_SNP [dm3] X_8839504_SNP [dm6]	G	A	2.084e^-4	0.885	INTRON CG12075
3R	5448643	3R_5448643_SNP [dm3] 3R_9622921_SNP [dm6]	C	T	2.089e^-4	0.885	UPSTREAM CG8312 INTRON CG8312
3L	10342685	3L_10342685_SNP [dm3] 3L_10349585_SNP [dm6]	G	T	2.095e^-4	0.885	INTRON CR44327
2L	17883581	2L_17883581_SNP [dm3] 2L_17883581_SNP [dm6]	T	A	2.100e^-4	0.885	INTERGENIC
X	9507434	X_9507434_SNP [dm3] X_9613401_SNP [dm6]	T	C	2.110e^-4	0.885	INTRON CG42797
2R	12506170	2R_12506170_SNP [dm3] 2R_16618665_SNP [dm6]	T	A	2.115e^-4	0.885	INTRON CG5065
2R	12506172	2R_12506172_SNP [dm3] 2R_16618667_SNP [dm6]	T	A	2.115e^-4	0.885	INTRON CG5065
2R	12506177	2R_12506177_SNP [dm3] 2R_16618672_SNP [dm6]	A	G	2.115e^-4	0.885	INTRON CG5065
2R	12506180	2R_12506180_SNP [dm3] 2R_16618675_SNP [dm6]	A	C	2.115e^-4	0.885	INTRON CG5065
3L	67599	3L_67599_SNP [dm3] 3L_67599_SNP [dm6]	T	C	2.116e^-4	0.885	SYNONYMOUS_CODING Lsp1gamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	2835610	3L_2835610_SNP [dm3] 3L_2835610_SNP [dm6]	G	T	2.118e^-4	0.885	INTRON CG43444
2R	3618312	2R_3618312_SNP [dm3] 2R_7730807_SNP [dm6]	T	A	2.125e^-4	0.886	INTRON CG18812
3L	7100312	3L_7100312_SNP [dm3] 3L_7107212_SNP [dm6]	C	G	2.147e^-4	0.89	INTRON form3
X	13238234	X_13238234_SNP [dm3] X_13344201_SNP [dm6]	A	G	2.148e^-4	0.89	DOWNSTREAM CR45708 INTERGENIC
2L	20113073	2L_20113073_DEL [dm3] 2L_20113073_DEL [dm6]	ATTCTTTG	A	2.149e^-4	0.89	INTERGENIC	transposable element FlyBase
2L	7921993	2L_7921993_SNP [dm3] 2L_7921993_SNP [dm6]	C	T	2.153e^-4	0.89	INTRON Snoo
2R	2570058	2R_2570058_SNP [dm3] 2R_6682553_SNP [dm6]	C	T	2.165e^-4	0.893	UPSTREAM CG15909 DOWNSTREAM CR44164 INTRON CG9422 EXON CR44165
2R	8919201	2R_8919201_SNP [dm3] 2R_13031696_SNP [dm6]	G	T	2.182e^-4	0.898	INTERGENIC	TF binding site mE1_TFBS_sens
3L	12173177	3L_12173177_SNP [dm3] 3L_12180077_SNP [dm6]	A	T	2.189e^-4	0.899	UTR_5_PRIME CAH2 INTRON CAH2
3L	12288778	3L_12288778_SNP [dm3] 3L_12295678_SNP [dm6]	G	C	2.219e^-4	0.909	INTRON CG4328
3L	2730593	3L_2730593_SNP [dm3] 3L_2730593_SNP [dm6]	A	C	2.226e^-4	0.91	INTRON Mrtf
2L	17934735	2L_17934735_SNP [dm3] 2L_17934735_SNP [dm6]	C	G	2.243e^-4	0.915	INTERGENIC
2R	1398674	2R_1398674_SNP [dm3] 2R_5511169_SNP [dm6]	A	T	2.260e^-4	0.919	INTRON CG30438	transposable element FlyBase
X	17517707	X_17517707_SNP [dm3] X_17623674_SNP [dm6]	T	C	2.272e^-4	0.919	UTR_3_PRIME stas DOWNSTREAM stas
3L	98969	3L_98969_SNP [dm3] 3L_98969_SNP [dm6]	C	G	2.276e^-4	0.919	UPSTREAM CG12483 INTERGENIC	TF binding site mE1_TFBS_zfh1
X	21308171	X_21308171_SNP [dm3] X_21437144_SNP [dm6]	A	G	2.279e^-4	0.919	INTRON CG42343	TF binding site BDTNP1_TFBS_dl
3L	8845254	3L_8845254_SNP [dm3] 3L_8852154_SNP [dm6]	T	A	2.282e^-4	0.919	INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	12358395	3L_12358395_SNP [dm3] 3L_12365295_SNP [dm6]	G	A	2.295e^-4	0.919	INTERGENIC
3L	11234602	3L_11234602_SNP [dm3] 3L_11241502_SNP [dm6]	A	G	2.306e^-4	0.919	INTERGENIC
X	534508	X_534508_SNP [dm3] X_640475_SNP [dm6]	G	A	2.306e^-4	0.919	SYNONYMOUS_CODING su_s_	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17937590	2L_17937590_SNP [dm3] 2L_17937590_SNP [dm6]	T	C	2.307e^-4	0.919	INTERGENIC
3R	9558004	3R_9558004_SNP [dm3] 3R_13732282_SNP [dm6]	G	A	2.307e^-4	0.919	INTRON CG34383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15965098	2R_15965098_SNP [dm3] 2R_20077593_SNP [dm6]	C	T	2.316e^-4	0.919	INTERGENIC
2L	2612758	2L_2612758_SNP [dm3] 2L_2612758_SNP [dm6]	A	T	2.317e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_cad
3L	18197603	3L_18197603_SNP [dm3] 3L_18204503_SNP [dm6]	C	T	2.318e^-4	0.919	DOWNSTREAM CG7320 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
3L	5492940	3L_5492940_SNP [dm3] 3L_5499840_SNP [dm6]	G	T	2.322e^-4	0.919	UPSTREAM blanks EXON CR44518	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12314052	3L_12314052_SNP [dm3] 3L_12320952_SNP [dm6]	C	T	2.326e^-4	0.919	INTERGENIC
X	6870543	X_6870543_SNP [dm3] X_6976510_SNP [dm6]	T	C	2.339e^-4	0.922	INTRON ogre
X	8131913	X_8131913_SNP [dm3] X_8237880_SNP [dm6]	T	C	2.356e^-4	0.925	SYNONYMOUS_CODING sdt
2L	9648167	2L_9648167_SNP [dm3] 2L_9648167_SNP [dm6]	C	A	2.358e^-4	0.925	SYNONYMOUS_CODING Apoltp
3L	20346866	3L_20346866_DEL [dm3] 3L_20353766_DEL [dm6]	TATGCAAAT	T	2.369e^-4	0.925	UTR_3_PRIME eRF1 UPSTREAM CG5618 DOWNSTREAM eRF1 INTRON CG5618
3L	96830	3L_96830_SNP [dm3] 3L_96830_SNP [dm6]	A	G	2.370e^-4	0.925	DOWNSTREAM CG12483 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14704426	X_14704426_SNP [dm3] X_14810393_SNP [dm6]	C	T	2.382e^-4	0.925	INTRON rut
2L	15400331	2L_15400331_SNP [dm3] 2L_15400331_SNP [dm6]	C	G	2.385e^-4	0.925	UPSTREAM CR44860 EXON CR45374
3L	46719	3L_46719_SNP [dm3] 3L_46719_SNP [dm6]	A	T	2.387e^-4	0.925	INTERGENIC
3L	1002619	3L_1002619_SNP [dm3] 3L_1002619_SNP [dm6]	A	C	2.388e^-4	0.925	INTRON trio
3L	18055626	3L_18055626_SNP [dm3] 3L_18062526_SNP [dm6]	A	T	2.395e^-4	0.925	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
3R	18523779	3R_18523779_SNP [dm3] 3R_22698057_SNP [dm6]	C	T	2.397e^-4	0.925	UPSTREAM Cyp6d4 DOWNSTREAM cd INTERGENIC
X	16700641	X_16700641_SNP [dm3] X_16806608_SNP [dm6]	A	G	2.403e^-4	0.925	SPLICE_SITE_REGION CR44053 DOWNSTREAM CG13005 INTRON ppk28 EXON CR44053
3L	1878106	3L_1878106_INS [dm3] 3L_1878106_INS [dm6]	A	ATA	2.410e^-4	0.925	INTRON CG13937	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7547679	3L_7547679_SNP [dm3] 3L_7554579_SNP [dm6]	A	T	2.418e^-4	0.925	INTERGENIC
3R	9574874	3R_9574874_SNP [dm3] 3R_13749152_SNP [dm6]	C	T	2.427e^-4	0.925	INTRON CG34383
3L	12478303	3L_12478303_SNP [dm3] 3L_12485203_SNP [dm6]	G	T	2.427e^-4	0.925	UPSTREAM CG33725 & 1 other INTRON CG33725	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16596998	X_16596998_SNP [dm3] X_16702965_SNP [dm6]	A	G	2.441e^-4	0.925	SYNONYMOUS_CODING CG9673 UPSTREAM spheroide INTRON CG4678
2L	20959262	2L_20959262_SNP [dm3] 2L_20959262_SNP [dm6]	A	T	2.444e^-4	0.925	INTERGENIC
2R	6336652	2R_6336652_SNP [dm3] 2R_10449147_SNP [dm6]	A	T	2.446e^-4	0.925	DOWNSTREAM Cyp49a1 INTRON Galphao
2R	6336653	2R_6336653_SNP [dm3] 2R_10449148_SNP [dm6]	G	A	2.446e^-4	0.925	DOWNSTREAM Cyp49a1 INTRON Galphao
3L	16250516	3L_16250516_SNP [dm3] 3L_16257416_SNP [dm6]	C	A	2.450e^-4	0.925	UPSTREAM CG13054 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	16008031	3L_16008031_DEL [dm3] 3L_16014931_DEL [dm6]	AAA	A	2.453e^-4	0.925	INTERGENIC
X	22095826	X_22095826_SNP [dm3] X_22693990_SNP [dm6]	G	A	2.472e^-4	0.925	INTRON CR44997	transposable element FlyBase
3L	7389955	3L_7389955_SNP [dm3] 3L_7396855_SNP [dm6]	C	A	2.474e^-4	0.925	SYNONYMOUS_CODING CG32379 DOWNSTREAM CG8563
3L	7389982	3L_7389982_SNP [dm3] 3L_7396882_SNP [dm6]	G	A	2.474e^-4	0.925	NON_SYNONYMOUS_CODING CG32379 DOWNSTREAM CG8563
3L	19372162	3L_19372162_SNP [dm3] 3L_19379062_SNP [dm6]	C	T	2.485e^-4	0.925	INTRON CG32206
3L	7548406	3L_7548406_SNP [dm3] 3L_7555306_SNP [dm6]	A	G	2.487e^-4	0.925	DOWNSTREAM CG14837 INTERGENIC
2R	13448500	2R_13448500_SNP [dm3] 2R_17560995_SNP [dm6]	T	A	2.487e^-4	0.925	INTRON Klp54D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9348004	2L_9348004_SNP [dm3] 2L_9348004_SNP [dm6]	T	C	2.487e^-4	0.925	DOWNSTREAM CR44802 INTERGENIC	TF binding site mE1_TFBS_kn
3L	16737665	3L_16737665_SNP [dm3] 3L_16744565_SNP [dm6]	T	A	2.497e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	19792563	2L_19792563_SNP [dm3] 2L_19792563_SNP [dm6]	C	T	2.506e^-4	0.926	SYNONYMOUS_CODING CG10466 UPSTREAM CdGAPr DOWNSTREAM fs_2_ltoPP43	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	2659255	3L_2659255_SNP [dm3] 3L_2659255_SNP [dm6]	C	G	2.508e^-4	0.926	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2659364	3L_2659364_DEL [dm3] 3L_2659364_DEL [dm6]	GCC	AA	2.508e^-4	0.926	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_chinmo
3R	24131595	3R_24131595_SNP [dm3] 3R_28305873_SNP [dm6]	C	G	2.532e^-4	0.931	INTERGENIC
3L	10283251	3L_10283251_SNP [dm3] 3L_10290151_SNP [dm6]	G	A	2.536e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17937581	2L_17937581_SNP [dm3] 2L_17937581_SNP [dm6]	A	C	2.536e^-4	0.931	INTERGENIC
3L	4734170	3L_4734170_SNP [dm3] 3L_4734170_SNP [dm6]	G	A	2.543e^-4	0.931	INTRON RhoGEF64C
3L	16480161	3L_16480161_SNP [dm3] 3L_16487061_SNP [dm6]	T	C	2.552e^-4	0.932	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
3L	2699591	3L_2699591_SNP [dm3] 3L_2699591_SNP [dm6]	C	T	2.562e^-4	0.932	INTRON Fife
X	17112505	X_17112505_SNP [dm3] X_17218472_SNP [dm6]	T	A	2.564e^-4	0.932	UPSTREAM CG12998 INTERGENIC
3L	8927109	3L_8927109_SNP [dm3] 3L_8934009_SNP [dm6]	A	G	2.570e^-4	0.932	SYNONYMOUS_CODING CG43783
3L	82745	3L_82745_SNP [dm3] 3L_82745_SNP [dm6]	A	G	2.570e^-4	0.932	INTERGENIC
3L	76358	3L_76358_SNP [dm3] 3L_76358_SNP [dm6]	T	C	2.596e^-4	0.94	INTERGENIC
3L	4630599	3L_4630599_SNP [dm3] 3L_4630599_SNP [dm6]	T	C	2.602e^-4	0.94	INTRON axo
3L	103773	3L_103773_SNP [dm3] 3L_103773_SNP [dm6]	T	A	2.618e^-4	0.94	INTERGENIC
2L	11887934	2L_11887934_SNP [dm3] 2L_11887934_SNP [dm6]	G	T	2.620e^-4	0.94	INTRON Pde1c
2R	19299932	2R_19299932_INS [dm3] 2R_23412409_INS [dm6]	T	TTT	2.621e^-4	0.94	UTR_3_PRIME CG9812
2L	12578458	2L_12578458_SNP [dm3] 2L_12578458_SNP [dm6]	G	T	2.623e^-4	0.94	INTERGENIC
3L	16673296	3L_16673296_DEL [dm3] 3L_16680196_DEL [dm6]	AA	A	2.636e^-4	0.94	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_dl
3L	95159	3L_95159_MNP [dm3] 3L_95159_MNP [dm6]	GCC	AAT	2.642e^-4	0.94	INTERGENIC
3R	14570123	3R_14570123_SNP [dm3] 3R_18744401_SNP [dm6]	A	C	2.643e^-4	0.94	SYNONYMOUS_CODING CG7718 UPSTREAM Mekk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8772489	3L_8772489_SNP [dm3] 3L_8779389_SNP [dm6]	C	T	2.643e^-4	0.94	INTRON Fhos	TF binding site mE1_TFBS_cad
3R	9578376	3R_9578376_SNP [dm3] 3R_13752654_SNP [dm6]	C	T	2.651e^-4	0.94	SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	24238110	3R_24238110_SNP [dm3] 3R_28412388_SNP [dm6]	T	C	2.656e^-4	0.94	INTERGENIC
3L	2699580	3L_2699580_SNP [dm3] 3L_2699580_SNP [dm6]	A	G	2.664e^-4	0.94	INTRON Fife
X	2696387	X_2696387_SNP [dm3] X_2802354_SNP [dm6]	C	A	2.667e^-4	0.94	INTRON kirre
3L	1878086	3L_1878086_SNP [dm3] 3L_1878086_SNP [dm6]	T	G	2.669e^-4	0.94	INTRON CG13937	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18047582	3R_18047582_SNP [dm3] 3R_22221860_SNP [dm6]	T	C	2.672e^-4	0.94	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15280427	3R_15280427_SNP [dm3] 3R_19454705_SNP [dm6]	G	A	2.688e^-4	0.941	INTRON CG31221
2R	12373264	2R_12373264_SNP [dm3] 2R_16485759_SNP [dm6]	T	C	2.690e^-4	0.941	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	1327445	2R_1327445_SNP [dm3] 2R_5439940_SNP [dm6]	A	T	2.700e^-4	0.941	INTRON laccase2
2L	1243662	2L_1243662_SNP [dm3] 2L_1243662_SNP [dm6]	C	A	2.702e^-4	0.941	DOWNSTREAM CG5397 INTERGENIC
2L	4744630	2L_4744630_SNP [dm3] 2L_4744630_SNP [dm6]	T	C	2.702e^-4	0.941	INTRON CG15630
2L	6029317	2L_6029317_SNP [dm3] 2L_6029317_SNP [dm6]	A	G	2.721e^-4	0.944	INTRON CG9109
2R	17391346	2R_17391346_SNP [dm3] 2R_21503841_SNP [dm6]	G	A	2.724e^-4	0.944	INTRON MESK2	TF binding site mE1_TFBS_inv
2R	1745409	2R_1745409_SNP [dm3] 2R_5857904_SNP [dm6]	C	T	2.729e^-4	0.944	INTRON dpr12
3R	7674069	3R_7674069_SNP [dm3] 3R_11848347_SNP [dm6]	G	A	2.736e^-4	0.944	INTRON CG6959	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16454526	X_16454526_SNP [dm3] X_16560493_SNP [dm6]	A	G	2.740e^-4	0.944	UPSTREAM Pp2B-14D DOWNSTREAM CanA-14F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_Trl
X	11023797	X_11023797_SNP [dm3] X_11129764_SNP [dm6]	T	G	2.741e^-4	0.944	UTR_3_PRIME Klp10A UPSTREAM Gtp-bp DOWNSTREAM Klp10A	regulatory region REDfly_CRMs
2R	15841000	2R_15841000_SNP [dm3] 2R_19953495_SNP [dm6]	G	A	2.757e^-4	0.945	UPSTREAM CG44622 INTERGENIC
2L	21882791	2L_21882791_SNP [dm3] 2L_21882791_SNP [dm6]	G	C	2.759e^-4	0.945	INTERGENIC
3L	3076368	3L_3076368_SNP [dm3] 3L_3076368_SNP [dm6]	A	G	2.763e^-4	0.945	INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8895388	3L_8895388_SNP [dm3] 3L_8902288_SNP [dm6]	A	C	2.763e^-4	0.945	UPSTREAM TrpA1 INTRON TrpA1
2L	2730431	2L_2730431_SNP [dm3] 2L_2730431_SNP [dm6]	G	A	2.772e^-4	0.946	UTR_5_PRIME CG31689 UPSTREAM CG31689 INTRON CG31689
X	9507437	X_9507437_SNP [dm3] X_9613404_SNP [dm6]	T	C	2.779e^-4	0.946	INTRON CG42797
3L	4538476	3L_4538476_SNP [dm3] 3L_4538476_SNP [dm6]	G	A	2.787e^-4	0.946	SYNONYMOUS_CODING CG11353 DOWNSTREAM CG32243	TF binding site BDTNP1_TFBS_twi
X	2779891	X_2779891_SNP [dm3] X_2885858_SNP [dm6]	A	G	2.801e^-4	0.946	NON_SYNONYMOUS_CODING CG14419 INTRON kirre	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15046069	2R_15046069_SNP [dm3] 2R_19158564_SNP [dm6]	C	T	2.803e^-4	0.946	INTRON ena	TF binding site mE1_TFBS_inv
2R	15046148	2R_15046148_INS [dm3] 2R_19158643_INS [dm6]	AG	TCC	2.803e^-4	0.946	INTRON ena	TF binding site mE1_TFBS_inv
2R	15046156	2R_15046156_SNP [dm3] 2R_19158651_SNP [dm6]	T	A	2.803e^-4	0.946	INTRON ena	TF binding site mE1_TFBS_inv
3L	1595697	3L_1595697_SNP [dm3] 3L_1595697_SNP [dm6]	A	G	2.827e^-4	0.952	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9253612	2R_9253612_SNP [dm3] 2R_13366107_SNP [dm6]	C	T	2.828e^-4	0.952	INTERGENIC
2L	19792506	2L_19792506_SNP [dm3] 2L_19792506_SNP [dm6]	C	A	2.844e^-4	0.955	UPSTREAM CdGAPr DOWNSTREAM fs_2_ltoPP43 INTRON CG10466	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	18533048	2L_18533048_SNP [dm3] 2L_18533048_SNP [dm6]	A	G	2.852e^-4	0.956	UTR_3_PRIME Pde11
2L	7772942	2L_7772942_SNP [dm3] 2L_7772942_SNP [dm6]	A	T	2.865e^-4	0.957	INTRON CG7191
3L	15995355	3L_15995355_SNP [dm3] 3L_16002255_SNP [dm6]	G	A	2.865e^-4	0.957	INTRON CG5830	TF binding site BDTNP1_TFBS_hb
2R	1799917	2R_1799917_SNP [dm3] 2R_5912412_SNP [dm6]	A	T	2.874e^-4	0.958	INTRON CG43366	TF binding site mE1_TFBS_chinmo
3R	25962095	3R_25962095_SNP [dm3] 3R_30136373_SNP [dm6]	G	A	2.884e^-4	0.958	SYNONYMOUS_CODING AdoR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14233375	X_14233375_SNP [dm3] X_14339342_SNP [dm6]	A	G	2.889e^-4	0.958	INTRON dpr8
2R	3091047	2R_3091047_SNP [dm3] 2R_7203542_SNP [dm6]	C	A	2.889e^-4	0.958	INTRON pk
X	12947763	X_12947763_SNP [dm3] X_13053730_SNP [dm6]	T	C	2.909e^-4	0.961	SYNONYMOUS_CODING CG12715 UPSTREAM CR44840 INTRON rad
3L	16873823	3L_16873823_SNP [dm3] 3L_16880723_SNP [dm6]	T	C	2.910e^-4	0.961	INTRON Lmpt
3L	4159998	3L_4159998_SNP [dm3] 3L_4159998_SNP [dm6]	G	A	2.912e^-4	0.961	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2L	16927298	2L_16927298_SNP [dm3] 2L_16927298_SNP [dm6]	T	A	2.918e^-4	0.961	INTERGENIC
2R	17351007	2R_17351007_SNP [dm3] 2R_21463502_SNP [dm6]	A	G	2.938e^-4	0.963	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6829672	2R_6829672_SNP [dm3] 2R_10942167_SNP [dm6]	T	G	2.946e^-4	0.963	UPSTREAM Spn47C INTERGENIC
3R	9684739	3R_9684739_SNP [dm3] 3R_13859017_SNP [dm6]	G	A	2.950e^-4	0.963	INTERGENIC
3R	9684740	3R_9684740_SNP [dm3] 3R_13859018_SNP [dm6]	C	G	2.950e^-4	0.963	INTERGENIC
3L	7921512	3L_7921512_INS [dm3] 3L_7928412_INS [dm6]	T	TCAAGT	2.954e^-4	0.963	INTRON syd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14623612	2L_14623612_SNP [dm3] 2L_14623612_SNP [dm6]	G	T	2.966e^-4	0.963	INTRON osp
3L	88761	3L_88761_SNP [dm3] 3L_88761_SNP [dm6]	T	G	2.969e^-4	0.963	INTERGENIC
3L	2834158	3L_2834158_SNP [dm3] 3L_2834158_SNP [dm6]	T	A	2.971e^-4	0.963	INTRON CG43444
2L	9205333	2L_9205333_SNP [dm3] 2L_9205333_SNP [dm6]	G	A	2.976e^-4	0.963	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7467145	3L_7467145_SNP [dm3] 3L_7474045_SNP [dm6]	T	C	2.983e^-4	0.963	INTERGENIC
3L	11574725	3L_11574725_SNP [dm3] 3L_11581625_SNP [dm6]	G	T	2.985e^-4	0.963	UTR_3_PRIME CG33269 UPSTREAM CG43391 DOWNSTREAM CG33269 & 1 other
X	6744997	X_6744997_SNP [dm3] X_6850964_SNP [dm6]	A	G	2.987e^-4	0.963	SYNONYMOUS_CODING CG4558 DOWNSTREAM CG14434	TF binding site mE1_TFBS_HSA
3L	20585874	3L_20585874_SNP [dm3] 3L_20592774_SNP [dm6]	T	C	2.995e^-4	0.964	INTERGENIC
X	14704387	X_14704387_SNP [dm3] X_14810354_SNP [dm6]	C	T	3.025e^-4	0.97	INTRON rut
2R	521217	2R_521217_SNP [dm3] 2R_4633712_SNP [dm6]	C	T	3.029e^-4	0.97	INTERGENIC	transposable element FlyBase
3R	9684714	3R_9684714_SNP [dm3] 3R_13858992_SNP [dm6]	A	G	3.031e^-4	0.97	INTERGENIC
X	490365	X_490365_SNP [dm3] X_596332_SNP [dm6]	C	T	3.043e^-4	0.97	INTRON CG13366 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25378986	3R_25378986_SNP [dm3] 3R_29553264_SNP [dm6]	G	A	3.053e^-4	0.97	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	303993	3L_303993_SNP [dm3] 3L_303993_SNP [dm6]	A	G	3.053e^-4	0.97	UTR_3_PRIME RhoGEF3
3R	26292061	3R_26292061_SNP [dm3] 3R_30466339_SNP [dm6]	T	C	3.059e^-4	0.97	UTR_5_PRIME PH4alphaEFB DOWNSTREAM CDase	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12456312	2R_12456312_SNP [dm3] 2R_16568807_SNP [dm6]	T	C	3.059e^-4	0.97	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
2R	17345808	2R_17345808_SNP [dm3] 2R_21458303_SNP [dm6]	T	C	3.078e^-4	0.97	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6673940	2R_6673940_SNP [dm3] 2R_10786435_SNP [dm6]	A	G	3.078e^-4	0.97	UPSTREAM CR44300 DOWNSTREAM CR44299 INTRON CG33144 EXON CR44301	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	5448586	3R_5448586_SNP [dm3] 3R_9622864_SNP [dm6]	A	T	3.085e^-4	0.97	UPSTREAM CG8312 INTRON CG8312	TF binding site mE1_TFBS_cad
3R	5448596	3R_5448596_SNP [dm3] 3R_9622874_SNP [dm6]	A	G	3.085e^-4	0.97	UPSTREAM CG8312 INTRON CG8312	TF binding site mE1_TFBS_cad
2L	6496303	2L_6496303_SNP [dm3] 2L_6496303_SNP [dm6]	T	A	3.093e^-4	0.97	UTR_3_PRIME CG31638 UPSTREAM CG9550
X	20405849	X_20405849_SNP [dm3] X_20534822_SNP [dm6]	G	C	3.109e^-4	0.97	INTERGENIC
2L	17945322	2L_17945322_SNP [dm3] 2L_17945322_SNP [dm6]	G	A	3.130e^-4	0.97	INTERGENIC
2L	3792929	2L_3792929_SNP [dm3] 2L_3792929_SNP [dm6]	C	T	3.131e^-4	0.97	SYNONYMOUS_CODING CG3921
3R	25961963	3R_25961963_SNP [dm3] 3R_30136241_SNP [dm6]	G	C	3.138e^-4	0.97	SYNONYMOUS_CODING AdoR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	457064	3L_457064_SNP [dm3] 3L_457064_SNP [dm6]	C	G	3.138e^-4	0.97	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	14248212	X_14248212_SNP [dm3] X_14354179_SNP [dm6]	G	A	3.143e^-4	0.97	INTRON dpr8
X	17112492	X_17112492_SNP [dm3] X_17218459_SNP [dm6]	T	C	3.144e^-4	0.97	UPSTREAM CG12998 INTERGENIC
3R	9665984	3R_9665984_SNP [dm3] 3R_13840262_SNP [dm6]	T	G	3.148e^-4	0.97	UPSTREAM CG31495 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7674958	3R_7674958_SNP [dm3] 3R_11849236_SNP [dm6]	C	T	3.160e^-4	0.97	INTRON CG6959
X	650682	X_650682_SNP [dm3] X_756649_SNP [dm6]	G	A	3.163e^-4	0.97	INTRON CG5254
3R	26435757	3R_26435757_SNP [dm3] 3R_30610035_SNP [dm6]	T	C	3.190e^-4	0.97	UTR_3_PRIME CG31016
3L	12173757	3L_12173757_SNP [dm3] 3L_12180657_SNP [dm6]	A	C	3.193e^-4	0.97	INTRON CAH2
3L	12173758	3L_12173758_SNP [dm3] 3L_12180658_SNP [dm6]	C	T	3.193e^-4	0.97	INTRON CAH2
3L	12173772	3L_12173772_SNP [dm3] 3L_12180672_SNP [dm6]	G	A	3.193e^-4	0.97	INTRON CAH2
3R	25286149	3R_25286149_SNP [dm3] 3R_29460427_SNP [dm6]	T	G	3.201e^-4	0.97	INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	96406	3L_96406_SNP [dm3] 3L_96406_SNP [dm6]	G	A	3.228e^-4	0.97	INTERGENIC
2L	14377158	2L_14377158_SNP [dm3] 2L_14377158_SNP [dm6]	C	A	3.236e^-4	0.97	INTERGENIC	transposable element FlyBase
3R	25286172	3R_25286172_SNP [dm3] 3R_29460450_SNP [dm6]	C	T	3.246e^-4	0.97	INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24205279	3R_24205279_INS [dm3] 3R_28379557_INS [dm6]	T	TATT	3.253e^-4	0.97	INTERGENIC
3L	2152146	3L_2152146_SNP [dm3] 3L_2152146_SNP [dm6]	C	T	3.258e^-4	0.97	UPSTREAM zormin INTERGENIC	TF binding site mE1_TFBS_Trl
3R	17002705	3R_17002705_SNP [dm3] 3R_21176983_SNP [dm6]	G	A	3.262e^-4	0.97	INTRON SNF4Agamma
3L	57072	3L_57072_SNP [dm3] 3L_57072_SNP [dm6]	T	C	3.263e^-4	0.97	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11418611	3L_11418611_SNP [dm3] 3L_11425511_SNP [dm6]	C	A	3.269e^-4	0.97	SYNONYMOUS_CODING CG7560	TF binding site mE1_TFBS_cad
3R	16007601	3R_16007601_SNP [dm3] 3R_20181879_SNP [dm6]	G	A	3.284e^-4	0.97	INTERGENIC
3L	86256	3L_86256_SNP [dm3] 3L_86256_SNP [dm6]	T	C	3.292e^-4	0.97	INTERGENIC
2L	10924854	2L_10924854_SNP [dm3] 2L_10924854_SNP [dm6]	G	A	3.295e^-4	0.97	INTRON dpr2
X	4953952	X_4953952_DEL [dm3] X_5059919_DEL [dm6]	CAA	G	3.302e^-4	0.97	INTRON CR44833 & 1 other
2L	16063704	2L_16063704_SNP [dm3] 2L_16063704_SNP [dm6]	A	G	3.320e^-4	0.97	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
3L	17053432	3L_17053432_SNP [dm3] 3L_17060332_SNP [dm6]	A	T	3.325e^-4	0.97	UTR_3_PRIME Rbp6
2R	17478044	2R_17478044_SNP [dm3] 2R_21590539_SNP [dm6]	G	A	3.325e^-4	0.97	SYNONYMOUS_CODING CG33225
2R	15205544	2R_15205544_SNP [dm3] 2R_19318039_SNP [dm6]	A	G	3.326e^-4	0.97	INTRON Rgk1
3L	9336204	3L_9336204_SNP [dm3] 3L_9343104_SNP [dm6]	T	A	3.327e^-4	0.97	SYNONYMOUS_CODING PGRP-LC	TF binding site mE1_TFBS_cad
3L	6774174	3L_6774174_DEL [dm3] 3L_6781074_DEL [dm6]	AG	A	3.329e^-4	0.97	INTERGENIC
3L	12896993	3L_12896993_SNP [dm3] 3L_12903893_SNP [dm6]	T	A	3.330e^-4	0.97	UPSTREAM CG32117 INTERGENIC
2L	9369408	2L_9369408_SNP [dm3] 2L_9369408_SNP [dm6]	A	G	3.334e^-4	0.97	DOWNSTREAM CG34181 & 1 other INTERGENIC
X	17237263	X_17237263_SNP [dm3] X_17343230_SNP [dm6]	C	A	3.345e^-4	0.97	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8516261	X_8516261_SNP [dm3] X_8622228_SNP [dm6]	A	T	3.352e^-4	0.97	INTERGENIC
X	3462162	X_3462162_SNP [dm3] X_3568129_SNP [dm6]	T	C	3.359e^-4	0.97	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	97239	3L_97239_SNP [dm3] 3L_97239_SNP [dm6]	G	A	3.361e^-4	0.97	DOWNSTREAM CG12483 INTERGENIC
X	13237975	X_13237975_SNP [dm3] X_13343942_SNP [dm6]	T	G	3.364e^-4	0.97	DOWNSTREAM CR45708 INTERGENIC
3R	25990697	3R_25990697_INS [dm3] 3R_30164975_INS [dm6]	T	TT	3.368e^-4	0.97	UTR_3_PRIME CG31030	TF binding site mE1_TFBS_cad
X	8733543	X_8733543_SNP [dm3] X_8839510_SNP [dm6]	A	C	3.370e^-4	0.97	INTRON CG12075
3R	7680949	3R_7680949_INS [dm3] 3R_11855227_INS [dm6]	G	GCGGAAG	3.372e^-4	0.97	INTRON CG6959
X	16069827	X_16069827_SNP [dm3] X_16175794_SNP [dm6]	G	A	3.380e^-4	0.97	INTERGENIC
X	16069831	X_16069831_SNP [dm3] X_16175798_SNP [dm6]	T	C	3.380e^-4	0.97	INTERGENIC
2L	9648170	2L_9648170_SNP [dm3] 2L_9648170_SNP [dm6]	T	C	3.381e^-4	0.97	SYNONYMOUS_CODING Apoltp
2L	9368527	2L_9368527_SNP [dm3] 2L_9368527_SNP [dm6]	T	C	3.394e^-4	0.97	DOWNSTREAM CG34181 INTERGENIC
X	16553216	X_16553216_SNP [dm3] X_16659183_SNP [dm6]	T	C	3.398e^-4	0.97	NON_SYNONYMOUS_CODING r	TF binding site mE1_TFBS_chinmo
X	10158333	X_10158333_SNP [dm3] X_10264300_SNP [dm6]	A	G	3.410e^-4	0.97	UTR_3_PRIME CG12643 UPSTREAM Hk	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	1371008	2R_1371008_SNP [dm3] 2R_5483503_SNP [dm6]	A	G	3.413e^-4	0.97	INTRON CG30440
2L	14377185	2L_14377185_SNP [dm3] 2L_14377185_SNP [dm6]	C	T	3.420e^-4	0.97	INTERGENIC	transposable element FlyBase
3L	10813788	3L_10813788_SNP [dm3] 3L_10820688_SNP [dm6]	C	T	3.425e^-4	0.97	INTERGENIC
3L	12647884	3L_12647884_SNP [dm3] 3L_12654784_SNP [dm6]	A	G	3.436e^-4	0.97	INTERGENIC
2L	14222334	2L_14222334_SNP [dm3] 2L_14222334_SNP [dm6]	C	T	3.449e^-4	0.97	INTRON Dyrk2
3L	9538551	3L_9538551_SNP [dm3] 3L_9545451_SNP [dm6]	T	C	3.459e^-4	0.97	INTERGENIC
X	13679415	X_13679415_SNP [dm3] X_13785382_SNP [dm6]	T	G	3.467e^-4	0.97	INTRON inaE
2R	1708595	2R_1708595_SNP [dm3] 2R_5821090_SNP [dm6]	C	T	3.469e^-4	0.97	INTRON dpr12	TF binding site mE1_TFBS_cad
2R	12522553	2R_12522553_SNP [dm3] 2R_16635048_SNP [dm6]	C	T	3.471e^-4	0.97	INTRON Alk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8372336	2L_8372336_SNP [dm3] 2L_8372336_SNP [dm6]	C	A	3.478e^-4	0.97	UPSTREAM CG17292 INTRON CG17292
X	761085	X_761085_SNP [dm3] X_867052_SNP [dm6]	A	G	3.481e^-4	0.97	INTRON CG43867
2L	17995691	2L_17995691_SNP [dm3] 2L_17995691_SNP [dm6]	G	A	3.489e^-4	0.97	INTERGENIC
2R	7260746	2R_7260746_SNP [dm3] 2R_11373241_SNP [dm6]	C	T	3.490e^-4	0.97	UPSTREAM CG13203 INTERGENIC
3L	6711509	3L_6711509_SNP [dm3] 3L_6718409_SNP [dm6]	T	C	3.490e^-4	0.97	INTRON ple
X	12266318	X_12266318_SNP [dm3] X_12372285_SNP [dm6]	G	T	3.496e^-4	0.97	UPSTREAM CG2577 INTERGENIC
3L	20085490	3L_20085490_SNP [dm3] 3L_20092390_SNP [dm6]	A	C	3.500e^-4	0.97	INTERGENIC
2L	7706913	2L_7706913_SNP [dm3] 2L_7706913_SNP [dm6]	A	G	3.507e^-4	0.97	SPLICE_SITE_REGION Tep3 SYNONYMOUS_CODING Tep3	TF binding site mE1_TFBS_inv
X	16226823	X_16226823_SNP [dm3] X_16332790_SNP [dm6]	A	C	3.518e^-4	0.97	UPSTREAM CG9921 & 1 other INTRON CG9921	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
X	2344960	X_2344960_SNP [dm3] X_2450927_SNP [dm6]	G	A	3.531e^-4	0.97	SYNONYMOUS_CODING boi DOWNSTREAM z	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8697792	3L_8697792_SNP [dm3] 3L_8704692_SNP [dm6]	G	T	3.534e^-4	0.97	INTERGENIC	TF binding site mE1_TFBS_cad
3L	8697940	3L_8697940_SNP [dm3] 3L_8704840_SNP [dm6]	A	G	3.534e^-4	0.97	INTERGENIC	TF binding site mE1_TFBS_cad
2L	16793694	2L_16793694_SNP [dm3] 2L_16793694_SNP [dm6]	T	C	3.538e^-4	0.97	UPSTREAM Ugt36Ba DOWNSTREAM CG17928 INTERGENIC
2R	18269927	2R_18269927_SNP [dm3] 2R_22382422_SNP [dm6]	T	C	3.539e^-4	0.97	UTR_3_PRIME wrapper UPSTREAM CG13506	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	17945328	2L_17945328_SNP [dm3] 2L_17945328_SNP [dm6]	A	T	3.543e^-4	0.97	INTERGENIC
3L	5417071	3L_5417071_SNP [dm3] 3L_5423971_SNP [dm6]	A	G	3.546e^-4	0.97	UPSTREAM CG34391 INTERGENIC
3L	4954146	3L_4954146_SNP [dm3] 3L_4954146_SNP [dm6]	T	A	3.559e^-4	0.97	INTRON Con
2L	20959263	2L_20959263_SNP [dm3] 2L_20959263_SNP [dm6]	G	C	3.560e^-4	0.97	INTERGENIC
2L	20959264	2L_20959264_INS [dm3] 2L_20959264_INS [dm6]	A	AA	3.560e^-4	0.97	INTERGENIC
2L	7599040	2L_7599040_SNP [dm3] 2L_7599040_SNP [dm6]	T	C	3.561e^-4	0.97	INTERGENIC
2L	16063744	2L_16063744_SNP [dm3] 2L_16063744_SNP [dm6]	T	C	3.562e^-4	0.97	INTRON beat-Ia	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	18423376	3R_18423376_SNP [dm3] 3R_22597654_SNP [dm6]	C	A	3.577e^-4	0.97	INTRON Efa6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17936426	2L_17936426_SNP [dm3] 2L_17936426_SNP [dm6]	T	C	3.578e^-4	0.97	INTERGENIC
2R	6660136	2R_6660136_INS [dm3] 2R_10772631_INS [dm6]	C	CC	3.586e^-4	0.97	INTRON CG33144
2L	9840942	2L_9840942_SNP [dm3] 2L_9840942_SNP [dm6]	G	C	3.588e^-4	0.97	INTRON nAChRalpha6
2R	17345019	2R_17345019_SNP [dm3] 2R_21457514_SNP [dm6]	C	T	3.595e^-4	0.97	INTRON Sdc
X	12297466	X_12297466_SNP [dm3] X_12403433_SNP [dm6]	T	G	3.596e^-4	0.97	INTERGENIC
3L	16146831	3L_16146831_SNP [dm3] 3L_16153731_SNP [dm6]	T	C	3.600e^-4	0.97	INTRON CG5151
2L	16063710	2L_16063710_SNP [dm3] 2L_16063710_SNP [dm6]	A	G	3.603e^-4	0.97	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
X	15211104	X_15211104_SNP [dm3] X_15317071_SNP [dm6]	T	C	3.609e^-4	0.97	SYNONYMOUS_CODING gce EXON CR44961	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
4	86109	4_86109_SNP [dm3] 4_65483_SNP [dm6]	T	A	3.610e^-4	0.97	UTR_3_PRIME RpS3A DOWNSTREAM snoRNA:CD-24 & 1 other
2R	855643	2R_855643_SNP [dm3] 2R_4968138_SNP [dm6]	T	G	3.612e^-4	0.97	INTRON Ir41a	transposable element FlyBase
2L	17943218	2L_17943218_SNP [dm3] 2L_17943218_SNP [dm6]	T	A	3.613e^-4	0.97	INTERGENIC
2R	19394995	2R_19394995_INS [dm3] 2R_23507472_INS [dm6]	C	CC	3.615e^-4	0.97	EXON CR43794
2R	18269618	2R_18269618_SNP [dm3] 2R_22382113_SNP [dm6]	A	G	3.622e^-4	0.97	SPLICE_SITE_REGION wrapper INTRON wrapper	TF binding site mE1_TFBS_cad
X	11331071	X_11331071_SNP [dm3] X_11437038_SNP [dm6]	T	C	3.631e^-4	0.97	SYNONYMOUS_CODING Evi5
2L	3298766	2L_3298766_SNP [dm3] 2L_3298766_SNP [dm6]	C	T	3.632e^-4	0.97	INTRON CG9663	TF binding site BDTNP1_TFBS_da
3R	9571333	3R_9571333_SNP [dm3] 3R_13745611_SNP [dm6]	G	T	3.634e^-4	0.97	INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7773115	2L_7773115_SNP [dm3] 2L_7773115_SNP [dm6]	T	C	3.636e^-4	0.97	SYNONYMOUS_CODING CG7191
X	6619053	X_6619053_SNP [dm3] X_6725020_SNP [dm6]	T	A	3.639e^-4	0.97	INTRON CG3168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA
3L	9647138	3L_9647138_SNP [dm3] 3L_9654038_SNP [dm6]	G	A	3.649e^-4	0.97	INTRON fry & 1 other
2L	20113472	2L_20113472_SNP [dm3] 2L_20113472_SNP [dm6]	T	A	3.657e^-4	0.97	INTERGENIC	transposable element FlyBase
2L	19784703	2L_19784703_SNP [dm3] 2L_19784703_SNP [dm6]	T	A	3.665e^-4	0.97	INTRON CdGAPr
3L	2130675	3L_2130675_SNP [dm3] 3L_2130675_SNP [dm6]	G	A	3.670e^-4	0.97	INTRON zormin	TF binding site mE1_TFBS_cad
2L	8988172	2L_8988172_SNP [dm3] 2L_8988172_SNP [dm6]	G	T	3.684e^-4	0.97	INTRON rost
3L	6472019	3L_6472019_SNP [dm3] 3L_6478919_SNP [dm6]	T	A	3.696e^-4	0.97	INTRON CG42747
2R	15841021	2R_15841021_SNP [dm3] 2R_19953516_SNP [dm6]	C	T	3.697e^-4	0.97	UPSTREAM CG44622 INTERGENIC
X	6859558	X_6859558_SNP [dm3] X_6965525_SNP [dm6]	T	C	3.703e^-4	0.97	SYNONYMOUS_CODING CG14431 INTRON CG32732	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	2612461	2L_2612461_SNP [dm3] 2L_2612461_SNP [dm6]	G	A	3.707e^-4	0.97	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	1910974	2R_1910974_SNP [dm3] 2R_6023469_SNP [dm6]	T	G	3.708e^-4	0.97	UPSTREAM dream INTERGENIC	TF binding site mE1_TFBS_cad
3L	15707832	3L_15707832_SNP [dm3] 3L_15714732_SNP [dm6]	A	T	3.710e^-4	0.97	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	86042	3L_86042_SNP [dm3] 3L_86042_SNP [dm6]	G	A	3.716e^-4	0.97	INTERGENIC
3L	18823762	3L_18823762_SNP [dm3] 3L_18830662_SNP [dm6]	A	G	3.718e^-4	0.97	SYNONYMOUS_CODING Indy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	8796622	2R_8796622_SNP [dm3] 2R_12909117_SNP [dm6]	C	T	3.719e^-4	0.97	INTERGENIC
X	2779868	X_2779868_SNP [dm3] X_2885835_SNP [dm6]	C	A	3.720e^-4	0.97	NON_SYNONYMOUS_CODING CG14419 INTRON kirre	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18833843	3L_18833843_SNP [dm3] 3L_18840743_SNP [dm6]	T	A	3.721e^-4	0.97	UPSTREAM Indy & 1 other INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	480598	X_480598_SNP [dm3] X_586565_SNP [dm6]	T	G	3.742e^-4	0.97	INTRON vnd & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17351152	2R_17351152_SNP [dm3] 2R_21463647_SNP [dm6]	G	A	3.745e^-4	0.97	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3R	24133732	3R_24133732_SNP [dm3] 3R_28308010_SNP [dm6]	C	T	3.754e^-4	0.97	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18358299	2R_18358299_SNP [dm3] 2R_22470794_SNP [dm6]	T	C	3.778e^-4	0.97	SYNONYMOUS_CODING CG10384	TF binding site mE1_TFBS_chinmo
3L	15992170	3L_15992170_SNP [dm3] 3L_15999070_SNP [dm6]	A	C	3.789e^-4	0.97	INTRON CG5830
3L	15992172	3L_15992172_SNP [dm3] 3L_15999072_SNP [dm6]	A	C	3.789e^-4	0.97	INTRON CG5830
X	12380128	X_12380128_SNP [dm3] X_12486095_SNP [dm6]	C	T	3.798e^-4	0.97	UPSTREAM Cpr11A INTERGENIC
2R	14322557	2R_14322557_SNP [dm3] 2R_18435052_SNP [dm6]	T	C	3.809e^-4	0.97	INTRON CG30118
3L	12173725	3L_12173725_SNP [dm3] 3L_12180625_SNP [dm6]	C	T	3.814e^-4	0.97	INTRON CAH2
X	509752	X_509752_SNP [dm3] X_615719_SNP [dm6]	T	G	3.833e^-4	0.97	UTR_5_PRIME CG13366 INTRON CG13366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
2L	9642713	2L_9642713_SNP [dm3] 2L_9642713_SNP [dm6]	T	C	3.836e^-4	0.97	SPLICE_SITE_REGION Apoltp INTRON Apoltp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7673357	3R_7673357_SNP [dm3] 3R_11847635_SNP [dm6]	A	G	3.839e^-4	0.97	INTRON CG6959	TF binding site mE1_TFBS_cad
2R	1904028	2R_1904028_DEL [dm3] 2R_6016523_DEL [dm6]	ATTGTA	A	3.843e^-4	0.97	UPSTREAM Act42A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2L	13079184	2L_13079184_SNP [dm3] 2L_13079184_SNP [dm6]	T	C	3.851e^-4	0.97	INTERGENIC
2R	1785839	2R_1785839_SNP [dm3] 2R_5898334_SNP [dm6]	G	T	3.852e^-4	0.97	INTRON CG43366	TF binding site BDTNP1_TFBS_hb
3L	20380302	3L_20380302_DEL [dm3] 3L_20387202_DEL [dm6]	AA	A	3.862e^-4	0.97	UPSTREAM fbl INTRON fbl	TF binding site mE1_TFBS_inv
2L	12400193	2L_12400193_SNP [dm3] 2L_12400193_SNP [dm6]	A	T	3.863e^-4	0.97	INTRON Pkd2
2L	12400202	2L_12400202_SNP [dm3] 2L_12400202_SNP [dm6]	C	T	3.863e^-4	0.97	INTRON Pkd2
2L	8370131	2L_8370131_SNP [dm3] 2L_8370131_SNP [dm6]	T	A	3.863e^-4	0.97	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
2L	8370138	2L_8370138_SNP [dm3] 2L_8370138_SNP [dm6]	C	G	3.863e^-4	0.97	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
2L	9642883	2L_9642883_SNP [dm3] 2L_9642883_SNP [dm6]	C	A	3.865e^-4	0.97	SPLICE_SITE_REGION Apoltp INTRON Apoltp	TF binding site mE1_TFBS_chinmo
3R	23272721	3R_23272721_SNP [dm3] 3R_27446999_SNP [dm6]	C	A	3.866e^-4	0.97	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	10674775	X_10674775_SNP [dm3] X_10780742_SNP [dm6]	G	A	3.887e^-4	0.97	UPSTREAM Ant2 DOWNSTREAM sesB INTRON Ant2
3L	4073835	3L_4073835_SNP [dm3] 3L_4073835_SNP [dm6]	G	A	3.893e^-4	0.97	SYNONYMOUS_CODING Faa DOWNSTREAM Gad1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	7681941	3R_7681941_SNP [dm3] 3R_11856219_SNP [dm6]	A	T	3.897e^-4	0.97	INTRON CG6959	TF binding site mE1_TFBS_cad
X	6964363	X_6964363_SNP [dm3] X_7070330_SNP [dm6]	C	T	3.902e^-4	0.97	INTRON CG4607
2L	10107580	2L_10107580_DEL [dm3] 2L_10107580_DEL [dm6]	TTG	AA	3.908e^-4	0.97	INTRON CG44153 & 1 other
3L	18824147	3L_18824147_SNP [dm3] 3L_18831047_SNP [dm6]	A	C	3.908e^-4	0.97	INTRON Indy	TF binding site mE1_TFBS_cad
3L	774209	3L_774209_SNP [dm3] 3L_774209_SNP [dm6]	C	T	3.912e^-4	0.97	INTERGENIC	TF binding site mE1_TFBS_sens
X	21309303	X_21309303_SNP [dm3] X_21438276_SNP [dm6]	G	T	3.913e^-4	0.97	INTRON CG42343	TF binding site BDTNP1_TFBS_dl
X	16290789	X_16290789_SNP [dm3] X_16396756_SNP [dm6]	C	T	3.929e^-4	0.97	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
3L	1461574	3L_1461574_SNP [dm3] 3L_1461574_SNP [dm6]	G	A	3.934e^-4	0.97	INTRON Ptp61F EXON CR44842	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3591587	3L_3591587_SNP [dm3] 3L_3591587_SNP [dm6]	C	T	3.944e^-4	0.97	INTRON Eip63E
3R	26619006	3R_26619006_SNP [dm3] 3R_30793284_SNP [dm6]	G	T	3.952e^-4	0.97	SYNONYMOUS_CODING wts	TF binding site mE1_TFBS_chinmo
3L	9328537	3L_9328537_SNP [dm3] 3L_9335437_SNP [dm6]	T	C	3.955e^-4	0.97	UPSTREAM PGRP-LA INTRON PGRP-LA
3L	55117	3L_55117_INS [dm3] 3L_55117_INS [dm6]	T	TTATCTTATAGAAATCCGTT...	3.977e^-4	0.97	UPSTREAM CG43149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	7277634	3L_7277634_SNP [dm3] 3L_7284534_SNP [dm6]	G	A	3.991e^-4	0.97	INTRON unc-13-4A
3L	7277658	3L_7277658_SNP [dm3] 3L_7284558_SNP [dm6]	T	C	3.991e^-4	0.97	INTRON unc-13-4A
3L	7277660	3L_7277660_SNP [dm3] 3L_7284560_SNP [dm6]	T	C	3.991e^-4	0.97	INTRON unc-13-4A
3L	16211885	3L_16211885_SNP [dm3] 3L_16218785_SNP [dm6]	C	A	3.998e^-4	0.97	INTERGENIC
X	10400249	X_10400249_INS [dm3] X_10506216_INS [dm6]	T	TT	4.009e^-4	0.97	INTRON spri
2R	9582960	2R_9582960_SNP [dm3] 2R_13695455_SNP [dm6]	C	T	4.020e^-4	0.97	INTRON fas
2R	1335485	2R_1335485_SNP [dm3] 2R_5447980_SNP [dm6]	A	G	4.024e^-4	0.97	DOWNSTREAM laccase2 INTRON laccase2
3L	9328396	3L_9328396_SNP [dm3] 3L_9335296_SNP [dm6]	A	G	4.031e^-4	0.97	UPSTREAM PGRP-LA INTRON PGRP-LA
3L	99055	3L_99055_SNP [dm3] 3L_99055_SNP [dm6]	A	C	4.033e^-4	0.97	UPSTREAM CG12483 INTERGENIC	TF binding site mE1_TFBS_zfh1
3L	18823768	3L_18823768_SNP [dm3] 3L_18830668_SNP [dm6]	A	G	4.034e^-4	0.97	SYNONYMOUS_CODING Indy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	19788132	2L_19788132_SNP [dm3] 2L_19788132_SNP [dm6]	A	C	4.034e^-4	0.97	INTRON CdGAPr
2R	20572792	2R_20572792_SNP [dm3] 2R_24685269_SNP [dm6]	T	C	4.041e^-4	0.97	UPSTREAM Mmp1 INTRON Mmp1
3L	7765142	3L_7765142_SNP [dm3] 3L_7772042_SNP [dm6]	A	G	4.042e^-4	0.97	INTRON Clk	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3L	7765168	3L_7765168_SNP [dm3] 3L_7772068_SNP [dm6]	A	T	4.042e^-4	0.97	INTRON Clk	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2R	15852027	2R_15852027_DEL [dm3] 2R_19964522_DEL [dm6]	AC	A	4.044e^-4	0.97	INTERGENIC
3L	7768150	3L_7768150_SNP [dm3] 3L_7775050_SNP [dm6]	G	A	4.054e^-4	0.97	INTRON Clk	regulatory region REDfly_CRMs
2L	12823663	2L_12823663_SNP [dm3] 2L_12823663_SNP [dm6]	C	G	4.056e^-4	0.97	UPSTREAM kek1 INTERGENIC
3L	88222	3L_88222_SNP [dm3] 3L_88222_SNP [dm6]	A	G	4.064e^-4	0.97	INTERGENIC
X	13382386	X_13382386_SNP [dm3] X_13488353_SNP [dm6]	G	A	4.065e^-4	0.97	INTRON Neto
X	11847135	X_11847135_SNP [dm3] X_11953102_SNP [dm6]	A	T	4.082e^-4	0.97	INTRON cac	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	3067381	X_3067381_INS [dm3] X_3173348_INS [dm6]	T	TT	4.087e^-4	0.97	UPSTREAM CG18508 DOWNSTREAM Fcp3C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	6598809	3L_6598809_SNP [dm3] 3L_6605709_SNP [dm6]	A	G	4.094e^-4	0.97	SYNONYMOUS_CODING zpg UPSTREAM CG8368 INTRON CG8368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	5694652	3L_5694652_SNP [dm3] 3L_5701552_SNP [dm6]	G	A	4.095e^-4	0.97	INTRON sif
X	14115183	X_14115183_SNP [dm3] X_14221150_SNP [dm6]	C	A	4.101e^-4	0.97	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3580207	3L_3580207_SNP [dm3] 3L_3580207_SNP [dm6]	A	G	4.102e^-4	0.97	INTRON Eip63E
3R	5448600	3R_5448600_DEL [dm3] 3R_9622878_DEL [dm6]	ATACGCATGA	A	4.104e^-4	0.97	UPSTREAM CG8312 INTRON CG8312	TF binding site mE1_TFBS_cad
X	21857748	X_21857748_DEL [dm3] X_22455912_DEL [dm6]	AA	A	4.104e^-4	0.97	UTR_5_PRIME CG14619 UPSTREAM wap & 1 other INTRON CG14619	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19684649	2R_19684649_SNP [dm3] 2R_23797126_SNP [dm6]	A	C	4.106e^-4	0.97	INTRON CG9850
2R	8877984	2R_8877984_SNP [dm3] 2R_12990479_SNP [dm6]	G	A	4.116e^-4	0.97	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb mE1_TFBS_Trl
2R	8877995	2R_8877995_SNP [dm3] 2R_12990490_SNP [dm6]	C	T	4.116e^-4	0.97	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb mE1_TFBS_Trl
3R	25286125	3R_25286125_SNP [dm3] 3R_29460403_SNP [dm6]	G	A	4.123e^-4	0.97	INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18269625	2R_18269625_SNP [dm3] 2R_22382120_SNP [dm6]	C	T	4.124e^-4	0.97	INTRON wrapper	TF binding site mE1_TFBS_cad
X	3536423	X_3536423_SNP [dm3] X_3642390_SNP [dm6]	G	T	4.128e^-4	0.97	INTRON AstA-R1
X	21325244	X_21325244_SNP [dm3] X_21454217_SNP [dm6]	T	G	4.131e^-4	0.97	INTRON CG42343
3R	12429047	3R_12429047_SNP [dm3] 3R_16603325_SNP [dm6]	A	T	4.145e^-4	0.97	INTRON CG10345
X	17359687	X_17359687_SNP [dm3] X_17465654_SNP [dm6]	A	T	4.158e^-4	0.97	INTRON CG43658
X	10934416	X_10934416_SNP [dm3] X_11040383_SNP [dm6]	A	G	4.181e^-4	0.97	UPSTREAM CG42339 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13043720	2R_13043720_SNP [dm3] 2R_17156215_SNP [dm6]	G	A	4.184e^-4	0.97	UTR_3_PRIME CG17290 DOWNSTREAM CG17290 & 1 other
2R	13043776	2R_13043776_SNP [dm3] 2R_17156271_SNP [dm6]	T	G	4.184e^-4	0.97	UTR_3_PRIME CG17290 DOWNSTREAM CG17287
2R	13043792	2R_13043792_SNP [dm3] 2R_17156287_SNP [dm6]	A	G	4.184e^-4	0.97	UTR_3_PRIME CG17290 DOWNSTREAM CG17287
3L	5119947	3L_5119947_SNP [dm3] 3L_5126847_SNP [dm6]	C	T	4.190e^-4	0.97	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	16749752	2R_16749752_SNP [dm3] 2R_20862247_SNP [dm6]	A	G	4.197e^-4	0.97	INTERGENIC
2R	1764661	2R_1764661_SNP [dm3] 2R_5877156_SNP [dm6]	C	G	4.203e^-4	0.97	INTERGENIC
2L	13733554	2L_13733554_SNP [dm3] 2L_13733554_SNP [dm6]	A	C	4.204e^-4	0.97	INTERGENIC
2L	8988198	2L_8988198_SNP [dm3] 2L_8988198_SNP [dm6]	C	G	4.217e^-4	0.97	INTRON rost
X	8516256	X_8516256_SNP [dm3] X_8622223_SNP [dm6]	A	T	4.223e^-4	0.97	INTERGENIC
3L	18819362	3L_18819362_DEL [dm3] 3L_18826262_DEL [dm6]	ATTGTTGCTG	A	4.228e^-4	0.97	INTRON Cat
3L	18819372	3L_18819372_INS [dm3] 3L_18826272_INS [dm6]	A	ATAGAGCACA	4.228e^-4	0.97	INTRON Cat
3R	22158675	3R_22158675_SNP [dm3] 3R_26332953_SNP [dm6]	C	G	4.229e^-4	0.97	INTRON CG33970
3L	16660767	3L_16660767_SNP [dm3] 3L_16667667_SNP [dm6]	T	C	4.232e^-4	0.97	UTR_5_PRIME Galphaf	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	18423375	3R_18423375_SNP [dm3] 3R_22597653_SNP [dm6]	T	C	4.236e^-4	0.97	INTRON Efa6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12400201	2L_12400201_SNP [dm3] 2L_12400201_SNP [dm6]	T	A	4.242e^-4	0.97	INTRON Pkd2
3L	16665315	3L_16665315_DEL [dm3] 3L_16672215_DEL [dm6]	CTTGT	C	4.254e^-4	0.97	UTR_3_PRIME zetaCOP INTRON zetaCOP
3L	16665323	3L_16665323_SNP [dm3] 3L_16672223_SNP [dm6]	C	T	4.254e^-4	0.97	UTR_3_PRIME zetaCOP INTRON zetaCOP
3L	10999290	3L_10999290_SNP [dm3] 3L_11006190_SNP [dm6]	A	G	4.255e^-4	0.97	INTRON klu
X	8527087	X_8527087_SNP [dm3] X_8633054_SNP [dm6]	G	A	4.264e^-4	0.97	SYNONYMOUS_CODING oc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	12096811	X_12096811_SNP [dm3] X_12202778_SNP [dm6]	T	A	4.265e^-4	0.97	INTRON Ten-a	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_Trl
2R	18269632	2R_18269632_SNP [dm3] 2R_22382127_SNP [dm6]	C	T	4.277e^-4	0.97	INTRON wrapper	TF binding site mE1_TFBS_cad
2R	18269650	2R_18269650_SNP [dm3] 2R_22382145_SNP [dm6]	A	T	4.277e^-4	0.97	UPSTREAM CG13506 INTRON wrapper	TF binding site mE1_TFBS_cad
2L	4073253	2L_4073253_SNP [dm3] 2L_4073253_SNP [dm6]	C	G	4.282e^-4	0.97	INTRON ed
3R	14959131	3R_14959131_SNP [dm3] 3R_19133409_SNP [dm6]	C	T	4.283e^-4	0.97	INTRON Cyp12a5
3L	16874699	3L_16874699_SNP [dm3] 3L_16881599_SNP [dm6]	T	A	4.294e^-4	0.97	INTRON Lmpt
3L	10221065	3L_10221065_INS [dm3] 3L_10227965_INS [dm6]	C	AG	4.294e^-4	0.97	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_Kr
3L	10221068	3L_10221068_INS [dm3] 3L_10227968_INS [dm6]	A	AA	4.294e^-4	0.97	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_Kr
3L	4673799	3L_4673799_SNP [dm3] 3L_4673799_SNP [dm6]	T	A	4.298e^-4	0.97	INTRON axo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16063671	2L_16063671_SNP [dm3] 2L_16063671_SNP [dm6]	G	A	4.301e^-4	0.97	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
2L	16063676	2L_16063676_INS [dm3] 2L_16063676_INS [dm6]	C	AT	4.301e^-4	0.97	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
2R	18554633	2R_18554633_DEL [dm3] 2R_22667128_DEL [dm6]	AGAGTA	A	4.309e^-4	0.97	UPSTREAM CG30273 & 2 others DOWNSTREAM CG42867 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	16954902	2R_16954902_SNP [dm3] 2R_21067397_SNP [dm6]	G	A	4.312e^-4	0.97	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
3L	15675421	3L_15675421_SNP [dm3] 3L_15682321_SNP [dm6]	T	A	4.315e^-4	0.97	DOWNSTREAM CG7304 INTRON CG7579
X	18993221	X_18993221_SNP [dm3] X_19099188_SNP [dm6]	A	G	4.328e^-4	0.97	INTERGENIC
2L	6947169	2L_6947169_SNP [dm3] 2L_6947169_SNP [dm6]	C	G	4.335e^-4	0.97	SYNONYMOUS_CODING ihog	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	656643	X_656643_DEL [dm3] X_762610_DEL [dm6]	TT	T	4.338e^-4	0.97	UTR_3_PRIME RpL22 DOWNSTREAM CR42491 & 3 others	TF binding site mE1_TFBS_cad
X	10400242	X_10400242_SNP [dm3] X_10506209_SNP [dm6]	T	A	4.338e^-4	0.97	INTRON spri
2L	12399705	2L_12399705_SNP [dm3] 2L_12399705_SNP [dm6]	T	C	4.346e^-4	0.97	SYNONYMOUS_CODING Pkd2
2R	17341516	2R_17341516_SNP [dm3] 2R_21454011_SNP [dm6]	A	G	4.351e^-4	0.97	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2L	17943243	2L_17943243_SNP [dm3] 2L_17943243_SNP [dm6]	T	A	4.352e^-4	0.97	INTERGENIC
X	12533776	X_12533776_SNP [dm3] X_12639743_SNP [dm6]	C	A	4.353e^-4	0.97	INTRON Tomosyn	TF binding site BDTNP1_TFBS_da
3L	6439229	3L_6439229_SNP [dm3] 3L_6446129_SNP [dm6]	G	A	4.363e^-4	0.97	INTRON CG42747
2L	21009759	2L_21009759_SNP [dm3] 2L_21009759_SNP [dm6]	C	G	4.365e^-4	0.97	INTRON CG42238	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	2895552	X_2895552_SNP [dm3] X_3001519_SNP [dm6]	T	C	4.372e^-4	0.97	INTRON kirre
X	5750650	X_5750650_SNP [dm3] X_5856617_SNP [dm6]	T	C	4.373e^-4	0.97	INTERGENIC
3L	4538546	3L_4538546_SNP [dm3] 3L_4538546_SNP [dm6]	C	A	4.375e^-4	0.97	SYNONYMOUS_CODING CG11353 DOWNSTREAM CG32243	TF binding site BDTNP1_TFBS_twi
2L	10107594	2L_10107594_SNP [dm3] 2L_10107594_SNP [dm6]	A	C	4.382e^-4	0.97	INTRON CG44153 & 1 other
2L	10107605	2L_10107605_SNP [dm3] 2L_10107605_SNP [dm6]	G	T	4.382e^-4	0.97	INTRON CG44153 & 1 other
X	2457620	X_2457620_SNP [dm3] X_2563587_SNP [dm6]	A	G	4.384e^-4	0.97	INTRON Pdfr	TF binding site mE1_TFBS_inv
X	2457628	X_2457628_SNP [dm3] X_2563595_SNP [dm6]	A	G	4.384e^-4	0.97	INTRON Pdfr	TF binding site mE1_TFBS_inv
2L	7770008	2L_7770008_SNP [dm3] 2L_7770008_SNP [dm6]	G	T	4.387e^-4	0.97	INTRON CG7191
X	10674929	X_10674929_SNP [dm3] X_10780896_SNP [dm6]	C	T	4.406e^-4	0.97	UTR_3_PRIME sesB UPSTREAM Ant2 DOWNSTREAM sesB INTRON Ant2
2L	10136460	2L_10136460_SNP [dm3] 2L_10136460_SNP [dm6]	G	A	4.411e^-4	0.97	INTRON CG44153
2L	21942647	2L_21942647_SNP [dm3] 2L_21942647_SNP [dm6]	G	T	4.415e^-4	0.97	INTERGENIC
3R	22567787	3R_22567787_SNP [dm3] 3R_26742065_SNP [dm6]	G	C	4.417e^-4	0.97	INTERGENIC
X	3454533	X_3454533_SNP [dm3] X_3560500_SNP [dm6]	C	T	4.420e^-4	0.97	INTRON CG32791 & 1 other
3L	7613878	3L_7613878_SNP [dm3] 3L_7620778_SNP [dm6]	A	T	4.421e^-4	0.97	INTRON CG33275
3L	6443714	3L_6443714_SNP [dm3] 3L_6450614_SNP [dm6]	T	G	4.421e^-4	0.97	INTRON CG42747
3R	11902210	3R_11902210_SNP [dm3] 3R_16076488_SNP [dm6]	G	A	4.422e^-4	0.97	UPSTREAM Mhcl INTRON Mhcl
3L	7386768	3L_7386768_SNP [dm3] 3L_7393668_SNP [dm6]	G	A	4.435e^-4	0.97	SYNONYMOUS_CODING CG8563	TF binding site mE1_TFBS_cad
3L	13766175	3L_13766175_SNP [dm3] 3L_13773075_SNP [dm6]	T	A	4.444e^-4	0.97	INTRON bru-3
2R	19183459	2R_19183459_SNP [dm3] 2R_23295936_SNP [dm6]	T	A	4.473e^-4	0.97	INTERGENIC
3L	11772678	3L_11772678_SNP [dm3] 3L_11779578_SNP [dm6]	A	C	4.475e^-4	0.97	SYNONYMOUS_CODING CG14131 INTRON Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11367785	2R_11367785_SNP [dm3] 2R_15480280_SNP [dm6]	T	G	4.475e^-4	0.97	INTRON CG8180	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17246651	2R_17246651_SNP [dm3] 2R_21359146_SNP [dm6]	G	T	4.476e^-4	0.97	SYNONYMOUS_CODING cv-2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6093764	3R_6093764_INS [dm3] 3R_10268042_INS [dm6]	C	CCGCACAC	4.477e^-4	0.97	INTRON CG43143	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	8370140	2L_8370140_SNP [dm3] 2L_8370140_SNP [dm6]	C	T	4.494e^-4	0.97	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
2R	7579688	2R_7579688_SNP [dm3] 2R_11692183_SNP [dm6]	A	G	4.499e^-4	0.97	INTRON CG13197
3R	9561187	3R_9561187_SNP [dm3] 3R_13735465_SNP [dm6]	C	T	4.499e^-4	0.97	UPSTREAM CG34383 INTRON CG34383
3R	9570165	3R_9570165_SNP [dm3] 3R_13744443_SNP [dm6]	T	A	4.501e^-4	0.97	INTRON CG34383
3R	9570166	3R_9570166_SNP [dm3] 3R_13744444_SNP [dm6]	C	T	4.501e^-4	0.97	INTRON CG34383
X	10674930	X_10674930_SNP [dm3] X_10780897_SNP [dm6]	T	A	4.513e^-4	0.97	UTR_3_PRIME sesB UPSTREAM Ant2 DOWNSTREAM sesB INTRON Ant2
2L	20965769	2L_20965769_DEL [dm3] 2L_20965769_DEL [dm6]	TACTAGCTTTTAAGCATAAT...	T	4.518e^-4	0.97	UTR_3_PRIME CG42238	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	12801597	2L_12801597_SNP [dm3] 2L_12801597_SNP [dm6]	G	C	4.527e^-4	0.97	INTERGENIC
3R	9530518	3R_9530518_SNP [dm3] 3R_13704796_SNP [dm6]	T	C	4.529e^-4	0.97	SYNONYMOUS_CODING Adgf-D
2R	7697076	2R_7697076_INS [dm3] 2R_11809571_INS [dm6]	T	TAAGGTT	4.540e^-4	0.97	INTRON ths
2L	11831942	2L_11831942_SNP [dm3] 2L_11831942_SNP [dm6]	T	G	4.542e^-4	0.97	INTRON Pde1c
X	16332715	X_16332715_SNP [dm3] X_16438682_SNP [dm6]	G	T	4.542e^-4	0.97	UTR_3_PRIME CG9947 DOWNSTREAM CG9947 & 1 other
2L	8370098	2L_8370098_SNP [dm3] 2L_8370098_SNP [dm6]	A	T	4.546e^-4	0.97	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
3R	19080826	3R_19080826_SNP [dm3] 3R_23255104_SNP [dm6]	T	C	4.548e^-4	0.97	UTR_3_PRIME wda DOWNSTREAM EloA
X	11333305	X_11333305_DEL [dm3] X_11439272_DEL [dm6]	GTACATATATATATG...	G	4.549e^-4	0.97	INTRON Evi5
2L	1509860	2L_1509860_DEL [dm3] 2L_1509860_DEL [dm6]	TT	T	4.549e^-4	0.97	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3L	2925341	3L_2925341_SNP [dm3] 3L_2925341_SNP [dm6]	T	C	4.549e^-4	0.97	SYNONYMOUS_CODING Shab	TF binding site mE1_TFBS_chinmo
4	450745	4_450745_SNP [dm3] 4_430119_SNP [dm6]	T	C	4.555e^-4	0.97	EXON CR44024	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	19131298	2R_19131298_SNP [dm3] 2R_23243775_SNP [dm6]	A	G	4.561e^-4	0.97	DOWNSTREAM yip3 INTERGENIC
3L	5120093	3L_5120093_SNP [dm3] 3L_5126993_SNP [dm6]	A	G	4.569e^-4	0.97	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5120749	3L_5120749_SNP [dm3] 3L_5127649_SNP [dm6]	G	A	4.569e^-4	0.97	INTERGENIC
3L	5120992	3L_5120992_SNP [dm3] 3L_5127892_SNP [dm6]	C	T	4.569e^-4	0.97	INTERGENIC
3L	5120993	3L_5120993_SNP [dm3] 3L_5127893_SNP [dm6]	C	G	4.569e^-4	0.97	INTERGENIC
3L	5122490	3L_5122490_SNP [dm3] 3L_5129390_SNP [dm6]	C	T	4.569e^-4	0.97	UPSTREAM CG4597 INTERGENIC
3L	5122985	3L_5122985_SNP [dm3] 3L_5129885_SNP [dm6]	T	C	4.569e^-4	0.97	NON_SYNONYMOUS_CODING CG4597
3L	5123043	3L_5123043_SNP [dm3] 3L_5129943_SNP [dm6]	C	T	4.569e^-4	0.97	SYNONYMOUS_CODING CG4597
3L	8882304	3L_8882304_SNP [dm3] 3L_8889204_SNP [dm6]	C	T	4.571e^-4	0.97	SYNONYMOUS_CODING dally UPSTREAM CG43169
2R	20566397	2R_20566397_SNP [dm3] 2R_24678874_SNP [dm6]	A	T	4.589e^-4	0.97	INTRON Mmp1
3R	5473811	3R_5473811_SNP [dm3] 3R_9648089_SNP [dm6]	G	T	4.595e^-4	0.97	INTRON Dh44
X	10068377	X_10068377_SNP [dm3] X_10174344_SNP [dm6]	G	T	4.595e^-4	0.97	INTRON CG43902 & 1 other
2R	3882513	2R_3882513_SNP [dm3] 2R_7995008_SNP [dm6]	T	C	4.595e^-4	0.97	UPSTREAM Dic3 DOWNSTREAM Hey INTERGENIC	TF binding site mE1_TFBS_cad
3L	11602157	3L_11602157_SNP [dm3] 3L_11609057_SNP [dm6]	G	C	4.617e^-4	0.97	UTR_5_PRIME CG6091 UPSTREAM CG6091	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	97066	3L_97066_SNP [dm3] 3L_97066_SNP [dm6]	A	T	4.623e^-4	0.97	DOWNSTREAM CG12483 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9456493	3R_9456493_SNP [dm3] 3R_13630771_SNP [dm6]	A	T	4.623e^-4	0.97	DOWNSTREAM CR45594 INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	12983353	2L_12983353_SNP [dm3] 2L_12983353_SNP [dm6]	T	A	4.628e^-4	0.97	INTERGENIC
3R	9871931	3R_9871931_SNP [dm3] 3R_14046209_SNP [dm6]	A	C	4.632e^-4	0.97	INTERGENIC
2R	20102239	2R_20102239_SNP [dm3] 2R_24214716_SNP [dm6]	T	C	4.634e^-4	0.97	UTR_3_PRIME CG30419
X	16899879	X_16899879_SNP [dm3] X_17005846_SNP [dm6]	T	C	4.636e^-4	0.97	INTRON CG45002
3L	4734051	3L_4734051_SNP [dm3] 3L_4734051_SNP [dm6]	G	A	4.636e^-4	0.97	INTRON RhoGEF64C
2L	18465552	2L_18465552_SNP [dm3] 2L_18465552_SNP [dm6]	T	A	4.644e^-4	0.97	INTRON let-7-C	TF binding site mE1_TFBS_Trl
3R	9583745	3R_9583745_SNP [dm3] 3R_13758023_SNP [dm6]	C	A	4.644e^-4	0.97	INTRON CG34383
3R	9583759	3R_9583759_SNP [dm3] 3R_13758037_SNP [dm6]	C	A	4.644e^-4	0.97	INTRON CG34383
3L	10712202	3L_10712202_SNP [dm3] 3L_10719102_SNP [dm6]	A	T	4.652e^-4	0.97	INTERGENIC
3L	4664546	3L_4664546_SNP [dm3] 3L_4664546_SNP [dm6]	A	G	4.653e^-4	0.97	SYNONYMOUS_CODING axo
3L	4664550	3L_4664550_SNP [dm3] 3L_4664550_SNP [dm6]	C	G	4.653e^-4	0.97	SYNONYMOUS_CODING axo
3L	13182162	3L_13182162_SNP [dm3] 3L_13189062_SNP [dm6]	A	T	4.660e^-4	0.97	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	6762975	3R_6762975_SNP [dm3] 3R_10937253_SNP [dm6]	T	C	4.671e^-4	0.97	INTERGENIC
3L	6443611	3L_6443611_SNP [dm3] 3L_6450511_SNP [dm6]	G	A	4.680e^-4	0.97	INTRON CG42747
2L	14799591	2L_14799591_SNP [dm3] 2L_14799591_SNP [dm6]	A	G	4.682e^-4	0.97	INTERGENIC
2L	15543219	2L_15543219_SNP [dm3] 2L_15543219_SNP [dm6]	T	G	4.683e^-4	0.97	INTERGENIC
2R	3733388	2R_3733388_SNP [dm3] 2R_7845883_SNP [dm6]	C	T	4.687e^-4	0.97	INTRON Dgk
3L	2018202	3L_2018202_SNP [dm3] 3L_2018202_SNP [dm6]	T	C	4.706e^-4	0.97	INTERGENIC
3L	2018205	3L_2018205_SNP [dm3] 3L_2018205_SNP [dm6]	T	C	4.706e^-4	0.97	INTERGENIC
2L	2612935	2L_2612935_SNP [dm3] 2L_2612935_SNP [dm6]	G	A	4.712e^-4	0.97	INTERGENIC	TF binding site mE1_TFBS_cad
3L	16874700	3L_16874700_SNP [dm3] 3L_16881600_SNP [dm6]	A	T	4.715e^-4	0.97	INTRON Lmpt
3L	7277625	3L_7277625_SNP [dm3] 3L_7284525_SNP [dm6]	T	A	4.717e^-4	0.97	INTRON unc-13-4A
3R	4308673	3R_4308673_SNP [dm3] 3R_8482951_SNP [dm6]	T	A	4.718e^-4	0.97	INTERGENIC
X	22096334	X_22096334_SNP [dm3] X_22694498_SNP [dm6]	T	G	4.727e^-4	0.97	INTRON CR44997
X	16757862	X_16757862_SNP [dm3] X_16863829_SNP [dm6]	T	G	4.729e^-4	0.97	INTRON CG13003
2R	7260751	2R_7260751_SNP [dm3] 2R_11373246_SNP [dm6]	G	T	4.741e^-4	0.97	UPSTREAM CG13203 INTERGENIC
2L	20906433	2L_20906433_DEL [dm3] 2L_20906433_DEL [dm6]	CTTCT	A	4.743e^-4	0.97	INTRON sky & 1 other
3L	6598833	3L_6598833_SNP [dm3] 3L_6605733_SNP [dm6]	A	G	4.746e^-4	0.97	SYNONYMOUS_CODING zpg UPSTREAM CG8368 INTRON CG8368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	16626813	2R_16626813_SNP [dm3] 2R_20739308_SNP [dm6]	A	G	4.753e^-4	0.97	INTRON dpr
3L	2400875	3L_2400875_SNP [dm3] 3L_2400875_SNP [dm6]	G	A	4.762e^-4	0.97	INTRON CG45186
2L	6502841	2L_6502841_SNP [dm3] 2L_6502841_SNP [dm6]	C	T	4.770e^-4	0.97	INTRON CG31637	TF binding site mE1_TFBS_Trl
3L	4734179	3L_4734179_SNP [dm3] 3L_4734179_SNP [dm6]	T	C	4.772e^-4	0.97	INTRON RhoGEF64C
2R	12637695	2R_12637695_SNP [dm3] 2R_16750190_SNP [dm6]	T	A	4.776e^-4	0.97	UPSTREAM Acp53C14b DOWNSTREAM Acp53C14c INTRON Acp53Ea
X	6965311	X_6965311_SNP [dm3] X_7071278_SNP [dm6]	G	A	4.780e^-4	0.97	INTRON CG4607
3L	9051840	3L_9051840_SNP [dm3] 3L_9058740_SNP [dm6]	C	A	4.783e^-4	0.97	INTRON Argk	TF binding site mE1_TFBS_Trl
X	4196620	X_4196620_SNP [dm3] X_4302587_SNP [dm6]	C	A	4.786e^-4	0.97	UPSTREAM CG12692 INTERGENIC
X	3474380	X_3474380_SNP [dm3] X_3580347_SNP [dm6]	A	G	4.788e^-4	0.97	INTRON AstA-R1
2R	4655267	2R_4655267_SNP [dm3] 2R_8767762_SNP [dm6]	T	C	4.798e^-4	0.97	DOWNSTREAM CR44278 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	14357299	2L_14357299_SNP [dm3] 2L_14357299_SNP [dm6]	C	A	4.801e^-4	0.97	UTR_5_PRIME Rab14 UPSTREAM CR44851 INTRON Rab14
3R	18626562	3R_18626562_SNP [dm3] 3R_22800840_SNP [dm6]	G	T	4.803e^-4	0.97	INTERGENIC
3L	7020077	3L_7020077_SNP [dm3] 3L_7026977_SNP [dm6]	G	T	4.805e^-4	0.97	UPSTREAM CG17744 INTRON Mp
3R	24237969	3R_24237969_SNP [dm3] 3R_28412247_SNP [dm6]	C	G	4.807e^-4	0.97	INTERGENIC
3R	5448622	3R_5448622_SNP [dm3] 3R_9622900_SNP [dm6]	G	T	4.817e^-4	0.97	UPSTREAM CG8312 INTRON CG8312	TF binding site mE1_TFBS_cad
X	6664973	X_6664973_SNP [dm3] X_6770940_SNP [dm6]	C	T	4.819e^-4	0.97	UPSTREAM COQ7 DOWNSTREAM shf & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
3L	16480169	3L_16480169_SNP [dm3] 3L_16487069_SNP [dm6]	T	C	4.822e^-4	0.97	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
3L	16480193	3L_16480193_SNP [dm3] 3L_16487093_SNP [dm6]	A	T	4.822e^-4	0.97	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
2L	5963575	2L_5963575_SNP [dm3] 2L_5963575_SNP [dm6]	C	T	4.825e^-4	0.97	NON_SYNONYMOUS_CODING psd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3588673	3L_3588673_SNP [dm3] 3L_3588673_SNP [dm6]	T	G	4.846e^-4	0.973	INTRON Eip63E
2R	14558268	2R_14558268_SNP [dm3] 2R_18670763_SNP [dm6]	C	T	4.852e^-4	0.973	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	16954597	2R_16954597_SNP [dm3] 2R_21067092_SNP [dm6]	A	C	4.859e^-4	0.973	UPSTREAM Cht4 DOWNSTREAM Cht9 INTERGENIC	TF binding site mE1_TFBS_cad
2L	2334145	2L_2334145_SNP [dm3] 2L_2334145_SNP [dm6]	T	A	4.860e^-4	0.973	INTRON CG9967 & 1 other
2L	9343320	2L_9343320_SNP [dm3] 2L_9343320_SNP [dm6]	C	T	4.869e^-4	0.974	NON_SYNONYMOUS_CODING CG3748
X	640277	X_640277_SNP [dm3] X_746244_SNP [dm6]	T	A	4.886e^-4	0.974	INTRON sdk
2R	16954566	2R_16954566_SNP [dm3] 2R_21067061_SNP [dm6]	T	C	4.889e^-4	0.974	UTR_5_PRIME Cht4 DOWNSTREAM Cht9	TF binding site mE1_TFBS_cad
2L	12213132	2L_12213132_SNP [dm3] 2L_12213132_SNP [dm6]	G	C	4.901e^-4	0.974	INTRON aret
2R	19181656	2R_19181656_SNP [dm3] 2R_23294133_SNP [dm6]	C	G	4.905e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	18437375	3R_18437375_SNP [dm3] 3R_22611653_SNP [dm6]	A	G	4.913e^-4	0.974	NON_SYNONYMOUS_CODING CG31156 DOWNSTREAM CG13843
2L	8281839	2L_8281839_SNP [dm3] 2L_8281839_SNP [dm6]	C	T	4.915e^-4	0.974	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15208985	2R_15208985_SNP [dm3] 2R_19321480_SNP [dm6]	C	T	4.918e^-4	0.974	INTRON Rgk1	TF binding site mE1_TFBS_inv
3L	5120875	3L_5120875_DEL [dm3] 3L_5127775_DEL [dm6]	CA	C	4.920e^-4	0.974	INTERGENIC
3L	16789877	3L_16789877_SNP [dm3] 3L_16796777_SNP [dm6]	G	T	4.921e^-4	0.974	INTRON CG9674
2R	6994734	2R_6994734_SNP [dm3] 2R_11107229_SNP [dm6]	A	T	4.924e^-4	0.974	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	15487192	2L_15487192_DEL [dm3] 2L_15487192_DEL [dm6]	ACCGA	A	4.927e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9206109	2L_9206109_SNP [dm3] 2L_9206109_SNP [dm6]	C	A	4.935e^-4	0.974	INTRON tai	TF binding site BDTNP1_TFBS_dl
2R	3696755	2R_3696755_SNP [dm3] 2R_7809250_SNP [dm6]	T	A	4.938e^-4	0.974	DOWNSTREAM CG1550 INTRON sax
2L	20964233	2L_20964233_SNP [dm3] 2L_20964233_SNP [dm6]	T	A	4.941e^-4	0.974	INTERGENIC
3L	8796080	3L_8796080_SNP [dm3] 3L_8802980_SNP [dm6]	C	T	4.962e^-4	0.976	SYNONYMOUS_CODING CG34426 UPSTREAM CG13311 DOWNSTREAM CG32023	TF binding site mE1_TFBS_sens
3L	2700231	3L_2700231_SNP [dm3] 3L_2700231_SNP [dm6]	C	T	4.966e^-4	0.976	INTRON Fife
X	7909142	X_7909142_SNP [dm3] X_8015109_SNP [dm6]	C	T	4.969e^-4	0.976	INTRON Tbh
3L	50497	3L_50497_SNP [dm3] 3L_50497_SNP [dm6]	A	C	4.978e^-4	0.977	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	3627973	2L_3627973_SNP [dm3] 2L_3627973_SNP [dm6]	T	C	4.992e^-4	0.977	INTRON for
2R	15209137	2R_15209137_SNP [dm3] 2R_19321632_SNP [dm6]	T	C	4.995e^-4	0.977	INTRON Rgk1	TF binding site mE1_TFBS_inv
2L	12400112	2L_12400112_SNP [dm3] 2L_12400112_SNP [dm6]	C	A	4.995e^-4	0.977	SYNONYMOUS_CODING Pkd2
3L	10012860	3L_10012860_SNP [dm3] 3L_10019760_SNP [dm6]	C	A	5.009e^-4	0.977	INTRON dpr6
2R	2570019	2R_2570019_SNP [dm3] 2R_6682514_SNP [dm6]	G	A	5.016e^-4	0.977	UPSTREAM CG15909 DOWNSTREAM CR44165 & 1 other INTRON CG9422
2R	15205495	2R_15205495_SNP [dm3] 2R_19317990_SNP [dm6]	A	G	5.022e^-4	0.977	INTRON Rgk1
2R	18260726	2R_18260726_SNP [dm3] 2R_22373221_SNP [dm6]	G	A	5.023e^-4	0.977	UPSTREAM Liprin-gamma DOWNSTREAM CR44759 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	7681939	3R_7681939_SNP [dm3] 3R_11856217_SNP [dm6]	A	T	5.026e^-4	0.977	INTRON CG6959	TF binding site mE1_TFBS_cad
2R	18402801	2R_18402801_SNP [dm3] 2R_22515296_SNP [dm6]	T	G	5.031e^-4	0.977	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16480250	3L_16480250_SNP [dm3] 3L_16487150_SNP [dm6]	G	C	5.062e^-4	0.977	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
3L	16480252	3L_16480252_SNP [dm3] 3L_16487152_SNP [dm6]	A	G	5.062e^-4	0.977	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
3L	16480264	3L_16480264_SNP [dm3] 3L_16487164_SNP [dm6]	T	G	5.062e^-4	0.977	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
3L	16480272	3L_16480272_DEL [dm3] 3L_16487172_DEL [dm6]	TT	T	5.062e^-4	0.977	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
3L	16480292	3L_16480292_SNP [dm3] 3L_16487192_SNP [dm6]	G	T	5.062e^-4	0.977	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
3L	16665324	3L_16665324_SNP [dm3] 3L_16672224_SNP [dm6]	T	C	5.070e^-4	0.977	UTR_3_PRIME zetaCOP INTRON zetaCOP
2L	4778673	2L_4778673_SNP [dm3] 2L_4778673_SNP [dm6]	T	C	5.081e^-4	0.977	INTRON CG15630
2L	9185589	2L_9185589_INS [dm3] 2L_9185589_INS [dm6]	A	ACATA	5.082e^-4	0.977	INTRON tai	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16480138	3L_16480138_SNP [dm3] 3L_16487038_SNP [dm6]	C	T	5.115e^-4	0.977	INTRON CG33158
2R	7325392	2R_7325392_SNP [dm3] 2R_11437887_SNP [dm6]	G	A	5.119e^-4	0.977	INTRON CG7777
X	14258327	X_14258327_SNP [dm3] X_14364294_SNP [dm6]	C	A	5.119e^-4	0.977	INTRON dpr8
X	2775850	X_2775850_SNP [dm3] X_2881817_SNP [dm6]	G	A	5.119e^-4	0.977	DOWNSTREAM CG14418 INTRON kirre
3R	15368598	3R_15368598_SNP [dm3] 3R_19542876_SNP [dm6]	G	A	5.131e^-4	0.977	INTRON Dys
2L	7546693	2L_7546693_SNP [dm3] 2L_7546693_SNP [dm6]	C	T	5.135e^-4	0.977	INTRON RapGAP1
2L	1841544	2L_1841544_SNP [dm3] 2L_1841544_SNP [dm6]	C	T	5.139e^-4	0.977	UPSTREAM CR44074 INTRON wry
3L	101267	3L_101267_SNP [dm3] 3L_101267_SNP [dm6]	A	T	5.139e^-4	0.977	INTERGENIC
3R	18179275	3R_18179275_SNP [dm3] 3R_22353553_SNP [dm6]	T	G	5.141e^-4	0.977	INTRON rdhB
X	545184	X_545184_SNP [dm3] X_651151_SNP [dm6]	C	T	5.142e^-4	0.977	SYNONYMOUS_CODING Hmt4-20	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8790984	3L_8790984_SNP [dm3] 3L_8797884_SNP [dm6]	T	C	5.144e^-4	0.977	DOWNSTREAM CG13310 INTRON Fhos
2R	14623205	2R_14623205_SNP [dm3] 2R_18735700_SNP [dm6]	A	G	5.150e^-4	0.977	INTRON Hs3st-A
3L	5213525	3L_5213525_SNP [dm3] 3L_5220425_SNP [dm6]	C	T	5.155e^-4	0.977	INTRON shep
3R	25961479	3R_25961479_SNP [dm3] 3R_30135757_SNP [dm6]	C	T	5.164e^-4	0.977	NON_SYNONYMOUS_CODING AdoR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16647416	3L_16647416_DEL [dm3] 3L_16654316_DEL [dm6]	CGA	T	5.180e^-4	0.977	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
2L	9594679	2L_9594679_SNP [dm3] 2L_9594679_SNP [dm6]	C	T	5.191e^-4	0.977	INTERGENIC	regulatory region REDfly_CRMs
X	10788843	X_10788843_SNP [dm3] X_10894810_SNP [dm6]	A	T	5.192e^-4	0.977	UTR_3_PRIME CG1582 DOWNSTREAM CG1582
2R	16954615	2R_16954615_SNP [dm3] 2R_21067110_SNP [dm6]	T	A	5.193e^-4	0.977	UPSTREAM Cht4 DOWNSTREAM Cht9 INTERGENIC	TF binding site mE1_TFBS_cad
3L	4025537	3L_4025537_SNP [dm3] 3L_4025537_SNP [dm6]	C	A	5.198e^-4	0.977	UTR_5_PRIME CG11594 UPSTREAM CG11594 INTRON CG11594
3R	9858877	3R_9858877_SNP [dm3] 3R_14033155_SNP [dm6]	C	T	5.199e^-4	0.977	INTRON CG3061	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	14379862	2L_14379862_SNP [dm3] 2L_14379862_SNP [dm6]	G	A	5.207e^-4	0.977	SYNONYMOUS_CODING ppk	TF binding site mE1_TFBS_sens
X	19877187	X_19877187_SNP [dm3] X_19983154_SNP [dm6]	C	T	5.210e^-4	0.977	INTERGENIC
3L	9831601	3L_9831601_SNP [dm3] 3L_9838501_SNP [dm6]	G	A	5.212e^-4	0.977	SYNONYMOUS_CODING Cdk8 DOWNSTREAM RasGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	21735351	2L_21735351_SNP [dm3] 2L_21735351_SNP [dm6]	A	G	5.212e^-4	0.977	INTERGENIC	transposable element FlyBase
3R	9570160	3R_9570160_SNP [dm3] 3R_13744438_SNP [dm6]	A	C	5.216e^-4	0.977	INTRON CG34383
3L	3823388	3L_3823388_SNP [dm3] 3L_3823388_SNP [dm6]	T	C	5.216e^-4	0.977	INTRON enc	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	10791858	3L_10791858_SNP [dm3] 3L_10798758_SNP [dm6]	A	T	5.217e^-4	0.977	INTERGENIC
X	3834631	X_3834631_SNP [dm3] X_3940598_SNP [dm6]	T	A	5.225e^-4	0.977	UPSTREAM CG32786 DOWNSTREAM CG2941 INTERGENIC
3L	12422482	3L_12422482_SNP [dm3] 3L_12429382_SNP [dm6]	C	T	5.226e^-4	0.977	INTRON toe
3L	11053488	3L_11053488_SNP [dm3] 3L_11060388_SNP [dm6]	T	A	5.226e^-4	0.977	DOWNSTREAM CG7888 INTRON CG6321
3L	6472044	3L_6472044_SNP [dm3] 3L_6478944_SNP [dm6]	G	T	5.237e^-4	0.977	INTRON CG42747
2L	1089803	2L_1089803_SNP [dm3] 2L_1089803_SNP [dm6]	C	G	5.240e^-4	0.977	INTRON CG4629	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	8417873	3L_8417873_SNP [dm3] 3L_8424773_SNP [dm6]	T	C	5.242e^-4	0.977	UPSTREAM Cbl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	16050792	X_16050792_SNP [dm3] X_16156759_SNP [dm6]	G	A	5.252e^-4	0.978	INTERGENIC
3L	6997842	3L_6997842_SNP [dm3] 3L_7004742_SNP [dm6]	T	A	5.261e^-4	0.978	INTRON Mp

By genomic position
Variant impact
Gene name

Microbiota_OTU042 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results