DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.747e^-18)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

11066 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	1456543	2L_1456543_SNP [dm3] 2L_1456543_SNP [dm6]	G	A	0	0	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14654911	3L_14654911_DEL [dm3] 3L_14661811_DEL [dm6]	TCTGGATATATT...	T	0	0	INTRON dlp	TF binding site BDTNP1_TFBS_twi
2R	8228977	2R_8228977_SNP [dm3] 2R_12341472_SNP [dm6]	G	T	3.622e^-59	1.375e^-53	INTRON CG8839	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1449022	2L_1449022_SNP [dm3] 2L_1449022_SNP [dm6]	G	A	3.696e^-59	1.375e^-53	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1453514	2L_1453514_SNP [dm3] 2L_1453514_SNP [dm6]	C	T	3.696e^-59	1.375e^-53	INTERGENIC
2L	1452271	2L_1452271_DEL [dm3] 2L_1452271_DEL [dm6]	CTCGCTGC	C	1.708e^-58	5.296e^-53	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27452818	3R_27452818_SNP [dm3] 3R_31627096_SNP [dm6]	C	T	3.306e^-51	8.787e^-46	INTRON kek6
3L	4992706	3L_4992706_SNP [dm3] 3L_4992706_SNP [dm6]	A	T	5.519e^-20	9.334e^-15	INTRON Con
3L	5068314	3L_5068314_SNP [dm3] 3L_5068314_SNP [dm6]	T	G	5.519e^-20	9.334e^-15	INTRON Con
3L	5145219	3L_5145219_SNP [dm3] 3L_5152119_SNP [dm6]	G	A	5.519e^-20	9.334e^-15	UPSTREAM Srp54k INTRON Gen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	18131388	X_18131388_SNP [dm3] X_18237355_SNP [dm6]	C	A	5.519e^-20	9.334e^-15	INTERGENIC
3L	3692834	3L_3692834_SNP [dm3] 3L_3692834_SNP [dm6]	G	T	1.010e^-19	1.299e^-14	DOWNSTREAM CR43485 INTERGENIC
3L	3699189	3L_3699189_SNP [dm3] 3L_3699189_SNP [dm6]	G	A	1.010e^-19	1.299e^-14	INTERGENIC
3L	3701232	3L_3701232_SNP [dm3] 3L_3701232_SNP [dm6]	T	G	1.010e^-19	1.299e^-14	INTERGENIC
X	7242672	X_7242672_SNP [dm3] X_7348639_SNP [dm6]	C	A	1.092e^-19	1.299e^-14	INTRON CR44357 & 1 other
3L	4832512	3L_4832512_SNP [dm3] 3L_4832512_SNP [dm6]	G	A	1.117e^-19	1.299e^-14	NON_SYNONYMOUS_CODING CG13708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8689714	X_8689714_DEL [dm3] X_8795681_DEL [dm6]	CGC	T	1.759e^-19	1.655e^-14	INTRON Lim1
2L	11878165	2L_11878165_SNP [dm3] 2L_11878165_SNP [dm6]	T	G	1.831e^-19	1.655e^-14	UPSTREAM Pde1c INTRON Pde1c
2L	16029815	2L_16029815_SNP [dm3] 2L_16029815_SNP [dm6]	G	A	2.010e^-19	1.655e^-14	INTRON beat-Ic
3L	5244328	3L_5244328_SNP [dm3] 3L_5251228_SNP [dm6]	T	C	2.013e^-19	1.655e^-14	INTRON shep	TF binding site mE1_TFBS_inv
2R	15118029	2R_15118029_SNP [dm3] 2R_19230524_SNP [dm6]	T	C	2.045e^-19	1.655e^-14	INTRON cora	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	11878029	2L_11878029_SNP [dm3] 2L_11878029_SNP [dm6]	C	A	2.085e^-19	1.655e^-14	UPSTREAM Pde1c INTRON Pde1c
2L	11878043	2L_11878043_SNP [dm3] 2L_11878043_SNP [dm6]	C	T	2.085e^-19	1.655e^-14	UPSTREAM Pde1c INTRON Pde1c
2L	3237517	2L_3237517_SNP [dm3] 2L_3237517_SNP [dm6]	T	A	2.134e^-19	1.655e^-14	INTERGENIC
2L	15861412	2L_15861412_SNP [dm3] 2L_15861412_SNP [dm6]	A	G	3.786e^-19	2.818e^-14	INTERGENIC
2L	2340566	2L_2340566_SNP [dm3] 2L_2340566_SNP [dm6]	T	A	4.072e^-19	2.914e^-14	SYNONYMOUS_CODING eys INTRON CG9967	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7963730	2R_7963730_SNP [dm3] 2R_12076225_SNP [dm6]	G	T	7.553e^-19	5.204e^-14	INTRON CG8888
3L	1527025	3L_1527025_SNP [dm3] 3L_1527025_SNP [dm6]	C	T	1.046e^-18	6.951e^-14	INTRON CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	19687941	2R_19687941_SNP [dm3] 2R_23800418_SNP [dm6]	T	A	1.924e^-18	1.129e^-13	INTERGENIC
2L	10214147	2L_10214147_SNP [dm3] 2L_10214147_SNP [dm6]	C	T	1.969e^-18	1.129e^-13	SYNONYMOUS_CODING Npc1a DOWNSTREAM CG4901	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2R	4911647	2R_4911647_SNP [dm3] 2R_9024142_SNP [dm6]	A	G	1.969e^-18	1.129e^-13	INTRON CG8170	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9533177	3R_9533177_SNP [dm3] 3R_13707455_SNP [dm6]	G	A	1.969e^-18	1.129e^-13	SYNONYMOUS_CODING Adgf-C	TF binding site mE1_TFBS_cad
X	18118363	X_18118363_SNP [dm3] X_18224330_SNP [dm6]	C	T	2.002e^-18	1.129e^-13	INTRON CG33639
3R	11173792	3R_11173792_SNP [dm3] 3R_15348070_SNP [dm6]	C	A	2.607e^-18	1.427e^-13	UTR_5_PRIME CG42726 & 1 other DOWNSTREAM CG31301	TF binding site BDTNP1_TFBS_dl
2L	16966722	2L_16966722_SNP [dm3] 2L_16966722_SNP [dm6]	G	C	3.764e^-18	2.001e^-13	DOWNSTREAM CR45285 INTERGENIC
X	19227973	X_19227973_SNP [dm3] X_19333940_SNP [dm6]	G	A	6.775e^-18	3.409e^-13	INTRON nAChRalpha7
2L	16293998	2L_16293998_DEL [dm3] 2L_16293998_DEL [dm6]	AAACATTTCTTCA...	A	6.779e^-18	3.409e^-13	UPSTREAM CG13258 & 2 others INTERGENIC
2L	16994576	2L_16994576_SNP [dm3] 2L_16994576_SNP [dm6]	G	C	6.980e^-18	3.417e^-13	DOWNSTREAM beat-IIIb INTERGENIC
X	15382956	X_15382956_SNP [dm3] X_15488923_SNP [dm6]	T	A	3.061e^-16	1.460e^-11	UPSTREAM Gmap INTRON Gmap
3L	4944808	3L_4944808_SNP [dm3] 3L_4944808_SNP [dm6]	A	G	7.560e^-16	3.516e^-11	INTRON Con
2R	15117861	2R_15117861_SNP [dm3] 2R_19230356_SNP [dm6]	A	T	8.840e^-16	4.011e^-11	INTRON cora	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	7237230	X_7237230_DEL [dm3] X_7343197_DEL [dm6]	CTC	C	1.166e^-15	5.166e^-11	DOWNSTREAM CBP INTRON CR44357 & 1 other
2L	20890441	2L_20890441_SNP [dm3] 2L_20890441_SNP [dm6]	C	T	1.264e^-15	5.386e^-11	UPSTREAM sky INTRON sky & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4944798	3L_4944798_SNP [dm3] 3L_4944798_SNP [dm6]	G	A	1.274e^-15	5.386e^-11	INTRON Con
3L	3924015	3L_3924015_INS [dm3] 3L_3924015_INS [dm6]	T	TCCAC	1.713e^-15	7.082e^-11	INTRON Eip63F-1
2R	8228957	2R_8228957_SNP [dm3] 2R_12341452_SNP [dm6]	A	T	2.488e^-15	1.006e^-10	INTRON CG8839	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7963722	2R_7963722_SNP [dm3] 2R_12076217_SNP [dm6]	G	C	2.950e^-15	1.168e^-10	INTRON CG8888
X	7238004	X_7238004_SNP [dm3] X_7343971_SNP [dm6]	C	T	3.073e^-15	1.191e^-10	INTRON CR44357 & 1 other
2L	1453855	2L_1453855_SNP [dm3] 2L_1453855_SNP [dm6]	G	A	4.315e^-15	1.626e^-10	INTERGENIC
2L	9299453	2L_9299453_SNP [dm3] 2L_9299453_SNP [dm6]	T	A	4.371e^-15	1.626e^-10	UTR_3_PRIME Ggamma30A
X	18636495	X_18636495_DEL [dm3] X_18742462_DEL [dm6]	TCAGATT	T	8.385e^-15	3.059e^-10	INTERGENIC
2L	10657215	2L_10657215_SNP [dm3] 2L_10657215_SNP [dm6]	A	T	1.972e^-14	7.054e^-10	UPSTREAM CR45692 INTERGENIC
3R	21156154	3R_21156154_SNP [dm3] 3R_25330432_SNP [dm6]	G	A	3.156e^-14	1.065e^-9	SYNONYMOUS_CODING CHKov2 DOWNSTREAM CG10669
3R	21182090	3R_21182090_SNP [dm3] 3R_25356368_SNP [dm6]	G	C	3.156e^-14	1.065e^-9	INTRON Fur1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21210916	3R_21210916_SNP [dm3] 3R_25385194_SNP [dm6]	T	G	3.156e^-14	1.065e^-9	DOWNSTREAM CG31437 INTRON Fur1
3L	3698221	3L_3698221_SNP [dm3] 3L_3698221_SNP [dm6]	C	T	3.205e^-14	1.065e^-9	INTERGENIC
2R	5408498	2R_5408498_SNP [dm3] 2R_9520993_SNP [dm6]	T	C	5.573e^-14	1.819e^-9	INTRON brp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22628288	3R_22628288_SNP [dm3] 3R_26802566_SNP [dm6]	C	T	6.150e^-14	1.973e^-9	INTRON Tl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14486518	3R_14486518_SNP [dm3] 3R_18660796_SNP [dm6]	A	C	1.475e^-13	4.651e^-9	SYNONYMOUS_CODING CstF-64 DOWNSTREAM Cpsf73	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	16055276	2R_16055276_SNP [dm3] 2R_20167771_SNP [dm6]	G	A	2.331e^-13	7.229e^-9	INTERGENIC
3L	12950264	3L_12950264_SNP [dm3] 3L_12957164_SNP [dm6]	G	C	2.513e^-13	7.540e^-9	INTERGENIC
3L	12950269	3L_12950269_SNP [dm3] 3L_12957169_SNP [dm6]	A	T	2.513e^-13	7.540e^-9	INTERGENIC
3L	17559710	3L_17559710_DEL [dm3] 3L_17566610_DEL [dm6]	CAC	C	4.040e^-13	1.193e^-8	UPSTREAM snoRNA:Me28S-A576 INTRON Eip74EF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1467775	2L_1467775_SNP [dm3] 2L_1467775_SNP [dm6]	C	T	4.165e^-13	1.211e^-8	INTERGENIC
2R	2968730	2R_2968730_SNP [dm3] 2R_7081225_SNP [dm6]	A	T	6.244e^-13	1.787e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	7237259	X_7237259_SNP [dm3] X_7343226_SNP [dm6]	T	G	1.321e^-12	3.724e^-8	DOWNSTREAM CBP INTRON CR44357 & 1 other
2L	1468114	2L_1468114_SNP [dm3] 2L_1468114_SNP [dm6]	G	A	1.807e^-12	5.019e^-8	INTERGENIC
2L	1468712	2L_1468712_SNP [dm3] 2L_1468712_SNP [dm6]	T	C	2.435e^-12	6.663e^-8	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16055254	2R_16055254_INS [dm3] 2R_20167749_INS [dm6]	A	ACTTGCA	2.611e^-12	7.039e^-8	INTERGENIC
2L	7804639	2L_7804639_SNP [dm3] 2L_7804639_SNP [dm6]	A	G	3.162e^-12	8.404e^-8	SYNONYMOUS_CODING cdc14
2R	12443258	2R_12443258_SNP [dm3] 2R_16555753_SNP [dm6]	G	C	3.680e^-12	9.130e^-8	NON_SYNONYMOUS_CODING Syn2
2R	12443321	2R_12443321_SNP [dm3] 2R_16555816_SNP [dm6]	C	T	3.680e^-12	9.130e^-8	INTRON Syn2
2R	6745762	2R_6745762_SNP [dm3] 2R_10858257_SNP [dm6]	C	A	3.680e^-12	9.130e^-8	INTRON CG30015	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7861204	3L_7861204_SNP [dm3] 3L_7868104_SNP [dm6]	C	G	3.680e^-12	9.130e^-8	UPSTREAM Pdp1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18121513	X_18121513_SNP [dm3] X_18227480_SNP [dm6]	T	A	3.680e^-12	9.130e^-8	EXON CR45622
2R	12443332	2R_12443332_SNP [dm3] 2R_16555827_SNP [dm6]	C	A	5.431e^-12	1.329e^-7	INTRON Syn2
X	3770074	X_3770074_SNP [dm3] X_3876041_SNP [dm6]	C	A	5.756e^-12	1.373e^-7	NON_SYNONYMOUS_CODING CG2930
X	3770137	X_3770137_SNP [dm3] X_3876104_SNP [dm6]	G	A	5.756e^-12	1.373e^-7	SYNONYMOUS_CODING CG2930
3L	4936033	3L_4936033_SNP [dm3] 3L_4936033_SNP [dm6]	C	T	6.174e^-12	1.436e^-7	DOWNSTREAM Con INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	4936043	3L_4936043_SNP [dm3] 3L_4936043_SNP [dm6]	T	A	6.174e^-12	1.436e^-7	DOWNSTREAM Con INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19075104	2L_19075104_SNP [dm3] 2L_19075104_SNP [dm6]	C	T	7.946e^-12	1.793e^-7	UPSTREAM CG17572 EXON CR33315	TF binding site BDTNP1_TFBS_twi
2R	8013966	2R_8013966_SNP [dm3] 2R_12126461_SNP [dm6]	C	T	8.076e^-12	1.793e^-7	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	1456943	2L_1456943_SNP [dm3] 2L_1456943_SNP [dm6]	A	T	8.095e^-12	1.793e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1461380	2L_1461380_SNP [dm3] 2L_1461380_SNP [dm6]	T	C	8.095e^-12	1.793e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	10350967	X_10350967_SNP [dm3] X_10456934_SNP [dm6]	A	G	9.169e^-12	2.007e^-7	INTERGENIC
2R	19687660	2R_19687660_SNP [dm3] 2R_23800137_SNP [dm6]	T	A	1.162e^-11	2.515e^-7	INTERGENIC
2L	7804374	2L_7804374_SNP [dm3] 2L_7804374_SNP [dm6]	C	G	1.210e^-11	2.588e^-7	UTR_3_PRIME cdc14 INTRON cdc14
2L	3450168	2L_3450168_SNP [dm3] 2L_3450168_SNP [dm6]	T	G	1.311e^-11	2.773e^-7	INTRON Snx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3316078	2L_3316078_SNP [dm3] 2L_3316078_SNP [dm6]	G	T	1.429e^-11	2.987e^-7	SYNONYMOUS_CODING CG3277 DOWNSTREAM CG3326
X	14849280	X_14849280_SNP [dm3] X_14955247_SNP [dm6]	T	A	1.654e^-11	3.381e^-7	UPSTREAM eag & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	15390230	X_15390230_SNP [dm3] X_15496197_SNP [dm6]	G	C	1.654e^-11	3.381e^-7	INTRON Gmap	TF binding site BDTNP1_TFBS_dl
3R	24756336	3R_24756336_SNP [dm3] 3R_28930614_SNP [dm6]	T	C	2.325e^-11	4.579e^-7	INTRON CG14521
3R	26096374	3R_26096374_SNP [dm3] 3R_30270652_SNP [dm6]	A	T	2.363e^-11	4.579e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	26097564	3R_26097564_SNP [dm3] 3R_30271842_SNP [dm6]	G	C	2.363e^-11	4.579e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26097576	3R_26097576_SNP [dm3] 3R_30271854_SNP [dm6]	A	T	2.363e^-11	4.579e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26098638	3R_26098638_SNP [dm3] 3R_30272916_SNP [dm6]	C	T	2.363e^-11	4.579e^-7	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	4754555	3L_4754555_SNP [dm3] 3L_4754555_SNP [dm6]	T	C	2.544e^-11	4.880e^-7	UPSTREAM CG12493 INTRON RhoGEF64C
2R	9392955	2R_9392955_SNP [dm3] 2R_13505450_SNP [dm6]	C	T	2.628e^-11	4.989e^-7	SYNONYMOUS_CODING mars UPSTREAM mip120	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22628866	3R_22628866_SNP [dm3] 3R_26803144_SNP [dm6]	C	T	3.353e^-11	6.238e^-7	INTRON Tl	TF binding site mE1_TFBS_sens
3R	22628876	3R_22628876_SNP [dm3] 3R_26803154_SNP [dm6]	G	T	3.353e^-11	6.238e^-7	INTRON Tl	TF binding site mE1_TFBS_sens
X	12778249	X_12778249_SNP [dm3] X_12884216_SNP [dm6]	C	A	3.470e^-11	6.392e^-7	INTRON Pde9
2R	2035352	2R_2035352_SNP [dm3] 2R_6147847_SNP [dm6]	A	T	3.789e^-11	6.846e^-7	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16966812	2L_16966812_SNP [dm3] 2L_16966812_SNP [dm6]	C	T	3.845e^-11	6.846e^-7	INTERGENIC
2R	8228971	2R_8228971_SNP [dm3] 2R_12341466_SNP [dm6]	T	A	3.853e^-11	6.846e^-7	INTRON CG8839	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7676094	2L_7676094_DEL [dm3] 2L_7676094_DEL [dm6]	TGGCAACT	T	3.864e^-11	6.846e^-7	INTRON Myo28B1
3L	14647622	3L_14647622_SNP [dm3] 3L_14654522_SNP [dm6]	A	T	3.929e^-11	6.896e^-7	INTRON dlp
3R	26097712	3R_26097712_SNP [dm3] 3R_30271990_SNP [dm6]	C	T	4.999e^-11	8.691e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	13192599	2L_13192599_SNP [dm3] 2L_13192599_SNP [dm6]	G	A	5.145e^-11	8.863e^-7	UTR_5_PRIME Edem2 UPSTREAM CG16974	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	2465409	2R_2465409_SNP [dm3] 2R_6577904_SNP [dm6]	C	T	6.019e^-11	1.027e^-6	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	12777055	X_12777055_SNP [dm3] X_12883022_SNP [dm6]	C	T	7.134e^-11	1.207e^-6	INTRON Pde9
2R	2833860	2R_2833860_SNP [dm3] 2R_6946355_SNP [dm6]	T	C	7.508e^-11	1.258e^-6	DOWNSTREAM tRNA:K2:42Ea INTRON mim & 1 other
2L	3237319	2L_3237319_SNP [dm3] 2L_3237319_SNP [dm6]	C	A	7.755e^-11	1.288e^-6	INTERGENIC
3L	5690355	3L_5690355_SNP [dm3] 3L_5697255_SNP [dm6]	A	G	8.203e^-11	1.351e^-6	NON_SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26098397	3R_26098397_SNP [dm3] 3R_30272675_SNP [dm6]	G	A	8.343e^-11	1.361e^-6	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	8698315	3L_8698315_SNP [dm3] 3L_8705215_SNP [dm6]	G	T	9.087e^-11	1.470e^-6	INTERGENIC	TF binding site mE1_TFBS_cad
X	15655375	X_15655375_SNP [dm3] X_15761342_SNP [dm6]	G	T	9.670e^-11	1.551e^-6	SYNONYMOUS_CODING mRpL3 UPSTREAM Graf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	1468069	2L_1468069_SNP [dm3] 2L_1468069_SNP [dm6]	G	C	1.061e^-10	1.655e^-6	INTERGENIC
3L	16250521	3L_16250521_SNP [dm3] 3L_16257421_SNP [dm6]	G	A	1.066e^-10	1.655e^-6	UPSTREAM CG13054 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	16270914	3L_16270914_SNP [dm3] 3L_16277814_SNP [dm6]	C	T	1.066e^-10	1.655e^-6	NON_SYNONYMOUS_CODING CG13065 DOWNSTREAM CG13050	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	1931084	X_1931084_SNP [dm3] X_2037051_SNP [dm6]	T	A	1.067e^-10	1.655e^-6	UPSTREAM Actn INTRON Actn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6605053	2L_6605053_SNP [dm3] 2L_6605053_SNP [dm6]	C	T	1.084e^-10	1.664e^-6	INTERGENIC
2R	19902517	2R_19902517_SNP [dm3] 2R_24014994_SNP [dm6]	C	T	1.091e^-10	1.664e^-6	SYNONYMOUS_CODING CG4324 UPSTREAM Unc-89	TF binding site mE1_TFBS_chinmo
2R	9121523	2R_9121523_SNP [dm3] 2R_13234018_SNP [dm6]	C	G	1.153e^-10	1.734e^-6	NON_SYNONYMOUS_CODING CG4670	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	9966185	3L_9966185_SNP [dm3] 3L_9973085_SNP [dm6]	A	G	1.163e^-10	1.734e^-6	START_GAINED vnc UTR_5_PRIME vnc INTRON vnc & 1 other	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
2L	10655933	2L_10655933_SNP [dm3] 2L_10655933_SNP [dm6]	G	A	1.165e^-10	1.734e^-6	INTERGENIC
2L	9997545	2L_9997545_SNP [dm3] 2L_9997545_SNP [dm6]	T	C	1.435e^-10	2.076e^-6	NON_SYNONYMOUS_CODING SoYb UPSTREAM CG31875 INTRON CG31875	TF binding site mE1_TFBS_sens
2R	17445957	2R_17445957_SNP [dm3] 2R_21558452_SNP [dm6]	C	T	1.495e^-10	2.076e^-6	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17451041	2R_17451041_SNP [dm3] 2R_21563536_SNP [dm6]	A	G	1.495e^-10	2.076e^-6	INTRON CG10440
3L	4831516	3L_4831516_SNP [dm3] 3L_4831516_SNP [dm6]	A	G	1.495e^-10	2.076e^-6	SYNONYMOUS_CODING CG13708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4841485	3L_4841485_SNP [dm3] 3L_4841485_SNP [dm6]	A	T	1.495e^-10	2.076e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	5229058	3L_5229058_SNP [dm3] 3L_5235958_SNP [dm6]	C	T	1.495e^-10	2.076e^-6	SYNONYMOUS_CODING CG4669 INTRON shep	TF binding site mE1_TFBS_sens
3R	23612080	3R_23612080_SNP [dm3] 3R_27786358_SNP [dm6]	A	T	1.495e^-10	2.076e^-6	INTRON CG34353
X	1662374	X_1662374_SNP [dm3] X_1768341_SNP [dm6]	A	C	1.495e^-10	2.076e^-6	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	19932504	X_19932504_SNP [dm3] X_20038471_SNP [dm6]	C	T	1.495e^-10	2.076e^-6	INTRON Dop2R
X	6489144	X_6489144_SNP [dm3] X_6595111_SNP [dm6]	T	A	1.519e^-10	2.093e^-6	SYNONYMOUS_CODING Pat1	TF binding site mE1_TFBS_HSA
2R	3009253	2R_3009253_SNP [dm3] 2R_7121748_SNP [dm6]	T	C	1.564e^-10	2.131e^-6	INTRON esn
3L	13379397	3L_13379397_SNP [dm3] 3L_13386297_SNP [dm6]	G	A	1.569e^-10	2.131e^-6	UTR_3_PRIME CG10171 DOWNSTREAM CG14110	TF binding site BDTNP1_TFBS_twi
X	6992994	X_6992994_SNP [dm3] X_7098961_SNP [dm6]	T	C	1.601e^-10	2.143e^-6	UTR_3_PRIME CG4615 UPSTREAM Sxl	TF binding site mE1_TFBS_cad
X	7002297	X_7002297_SNP [dm3] X_7108264_SNP [dm6]	G	A	1.601e^-10	2.143e^-6	INTRON fz4
X	3778021	X_3778021_SNP [dm3] X_3883988_SNP [dm6]	C	G	1.723e^-10	2.289e^-6	UPSTREAM CG15239 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7672928	3R_7672928_SNP [dm3] 3R_11847206_SNP [dm6]	T	C	1.927e^-10	2.475e^-6	INTRON CG6959
3L	13378705	3L_13378705_SNP [dm3] 3L_13385605_SNP [dm6]	C	G	2.039e^-10	2.475e^-6	NON_SYNONYMOUS_CODING CG14110 DOWNSTREAM CG10171
3L	4128805	3L_4128805_SNP [dm3] 3L_4128805_SNP [dm6]	C	T	2.040e^-10	2.475e^-6	NON_SYNONYMOUS_CODING ens INTRON ens	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	5239073	3L_5239073_SNP [dm3] 3L_5245973_SNP [dm6]	C	G	2.046e^-10	2.475e^-6	INTRON shep
3L	5142744	3L_5142744_SNP [dm3] 3L_5149644_SNP [dm6]	A	G	2.065e^-10	2.475e^-6	SYNONYMOUS_CODING Aats-ala-m DOWNSTREAM Gen
X	10102754	X_10102754_INS [dm3] X_10208721_INS [dm6]	G	GGCCATTCTTGTCAAG...	2.065e^-10	2.475e^-6	UPSTREAM CR44894 INTRON CG15309	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20578163	3R_20578163_SNP [dm3] 3R_24752441_SNP [dm6]	T	A	2.069e^-10	2.475e^-6	INTRON tld	TF binding site mE1_TFBS_cad
2L	11877889	2L_11877889_SNP [dm3] 2L_11877889_SNP [dm6]	G	T	2.104e^-10	2.475e^-6	UPSTREAM Pde1c INTRON Pde1c
2L	11878222	2L_11878222_SNP [dm3] 2L_11878222_SNP [dm6]	A	T	2.104e^-10	2.475e^-6	UPSTREAM Pde1c INTRON Pde1c
3L	16042649	3L_16042649_SNP [dm3] 3L_16049549_SNP [dm6]	A	C	2.143e^-10	2.475e^-6	INTRON th & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	14767502	2L_14767502_SNP [dm3] 2L_14767502_SNP [dm6]	T	C	2.168e^-10	2.475e^-6	DOWNSTREAM CG4701 INTERGENIC
2R	19479342	2R_19479342_SNP [dm3] 2R_23591819_SNP [dm6]	G	A	2.168e^-10	2.475e^-6	INTRON apt
2R	19480780	2R_19480780_SNP [dm3] 2R_23593257_SNP [dm6]	G	A	2.168e^-10	2.475e^-6	INTRON apt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	7205468	2R_7205468_SNP [dm3] 2R_11317963_SNP [dm6]	C	T	2.311e^-10	2.475e^-6	UPSTREAM nompA INTRON nompA
X	20759363	X_20759363_SNP [dm3] X_20888336_SNP [dm6]	T	C	2.512e^-10	2.475e^-6	INTRON shakB
X	20759366	X_20759366_SNP [dm3] X_20888339_SNP [dm6]	G	A	2.512e^-10	2.475e^-6	INTRON shakB
3L	12403049	3L_12403049_SNP [dm3] 3L_12409949_SNP [dm6]	A	G	2.551e^-10	2.475e^-6	INTRON CG32103
2L	6746107	2L_6746107_SNP [dm3] 2L_6746107_SNP [dm6]	G	T	2.590e^-10	2.475e^-6	UPSTREAM CG31910 INTRON CG11221
3R	21777414	3R_21777414_SNP [dm3] 3R_25951692_SNP [dm6]	G	T	2.631e^-10	2.475e^-6	INTRON CCAP-R
3L	3640518	3L_3640518_SNP [dm3] 3L_3640518_SNP [dm6]	A	G	2.681e^-10	2.475e^-6	INTRON dar1	TF binding site mE1_TFBS_cad
3L	3642828	3L_3642828_SNP [dm3] 3L_3642828_SNP [dm6]	T	A	2.681e^-10	2.475e^-6	INTRON dar1
3L	3712979	3L_3712979_SNP [dm3] 3L_3712979_SNP [dm6]	G	C	2.681e^-10	2.475e^-6	INTERGENIC
3L	3842857	3L_3842857_SNP [dm3] 3L_3842857_SNP [dm6]	T	A	2.681e^-10	2.475e^-6	DOWNSTREAM enc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
3L	3843173	3L_3843173_SNP [dm3] 3L_3843173_SNP [dm6]	A	C	2.681e^-10	2.475e^-6	DOWNSTREAM enc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	3846280	3L_3846280_SNP [dm3] 3L_3846280_SNP [dm6]	C	T	2.681e^-10	2.475e^-6	UTR_5_PRIME Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	3846284	3L_3846284_SNP [dm3] 3L_3846284_SNP [dm6]	C	T	2.681e^-10	2.475e^-6	UTR_5_PRIME Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	3846671	3L_3846671_SNP [dm3] 3L_3846671_SNP [dm6]	C	G	2.681e^-10	2.475e^-6	UTR_5_PRIME Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	3852600	3L_3852600_SNP [dm3] 3L_3852600_SNP [dm6]	C	A	2.681e^-10	2.475e^-6	INTRON Awh
3L	3852605	3L_3852605_SNP [dm3] 3L_3852605_SNP [dm6]	C	G	2.681e^-10	2.475e^-6	INTRON Awh
3L	3853051	3L_3853051_SNP [dm3] 3L_3853051_SNP [dm6]	C	T	2.681e^-10	2.475e^-6	INTRON Awh
3L	3853708	3L_3853708_SNP [dm3] 3L_3853708_SNP [dm6]	G	A	2.681e^-10	2.475e^-6	INTRON Awh
3L	3853920	3L_3853920_SNP [dm3] 3L_3853920_SNP [dm6]	T	C	2.681e^-10	2.475e^-6	INTRON Awh
3L	3854248	3L_3854248_SNP [dm3] 3L_3854248_SNP [dm6]	G	C	2.681e^-10	2.475e^-6	INTRON Awh	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3854308	3L_3854308_SNP [dm3] 3L_3854308_SNP [dm6]	A	T	2.681e^-10	2.475e^-6	INTRON Awh	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3855009	3L_3855009_SNP [dm3] 3L_3855009_SNP [dm6]	G	A	2.681e^-10	2.475e^-6	INTRON Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	3855101	3L_3855101_SNP [dm3] 3L_3855101_SNP [dm6]	T	C	2.681e^-10	2.475e^-6	INTRON Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	3867812	3L_3867812_SNP [dm3] 3L_3867812_SNP [dm6]	T	G	2.681e^-10	2.475e^-6	INTERGENIC
3L	3885176	3L_3885176_SNP [dm3] 3L_3885176_SNP [dm6]	G	A	2.681e^-10	2.475e^-6	UPSTREAM CR43917 INTERGENIC
3L	3902020	3L_3902020_DEL [dm3] 3L_3902020_DEL [dm6]	CGAGT	C	2.681e^-10	2.475e^-6	UTR_5_PRIME Ubi-p63E INTRON Ubi-p63E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	4082273	3L_4082273_SNP [dm3] 3L_4082273_SNP [dm6]	C	T	2.681e^-10	2.475e^-6	INTRON Gad1
3L	4084326	3L_4084326_SNP [dm3] 3L_4084326_SNP [dm6]	C	G	2.681e^-10	2.475e^-6	INTRON Gad1
3L	4110145	3L_4110145_SNP [dm3] 3L_4110145_SNP [dm6]	G	A	2.681e^-10	2.475e^-6	INTRON Ack	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	4142077	3L_4142077_SNP [dm3] 3L_4142077_SNP [dm6]	G	A	2.681e^-10	2.475e^-6	UPSTREAM CG32260 DOWNSTREAM Ras64B & 1 other INTERGENIC
3L	4149718	3L_4149718_SNP [dm3] 3L_4149718_SNP [dm6]	G	A	2.681e^-10	2.475e^-6	INTRON CG1299	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	4156974	3L_4156974_SNP [dm3] 3L_4156974_SNP [dm6]	A	C	2.681e^-10	2.475e^-6	INTRON nab	TF binding site mE1_TFBS_Kr
3L	4205355	3L_4205355_SNP [dm3] 3L_4205355_SNP [dm6]	G	C	2.681e^-10	2.475e^-6	NON_SYNONYMOUS_CODING CG43367
3L	4277722	3L_4277722_SNP [dm3] 3L_4277722_SNP [dm6]	C	T	2.681e^-10	2.475e^-6	UTR_3_PRIME CG1273 UPSTREAM CG1311	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	4304106	3L_4304106_SNP [dm3] 3L_4304106_SNP [dm6]	C	T	2.681e^-10	2.475e^-6	INTRON dyl
3L	4376339	3L_4376339_SNP [dm3] 3L_4376339_SNP [dm6]	G	C	2.681e^-10	2.475e^-6	INTRON DopEcR
3L	4385236	3L_4385236_SNP [dm3] 3L_4385236_SNP [dm6]	G	A	2.681e^-10	2.475e^-6	INTRON slow
3L	4459003	3L_4459003_SNP [dm3] 3L_4459003_SNP [dm6]	T	C	2.681e^-10	2.475e^-6	UPSTREAM CG11345 DOWNSTREAM CG15022 INTERGENIC
3L	4493695	3L_4493695_SNP [dm3] 3L_4493695_SNP [dm6]	C	T	2.681e^-10	2.475e^-6	DOWNSTREAM CR44709 INTERGENIC
3L	4529754	3L_4529754_SNP [dm3] 3L_4529754_SNP [dm6]	C	T	2.681e^-10	2.475e^-6	INTRON Tie	TF binding site mE1_TFBS_inv
3L	4536846	3L_4536846_SNP [dm3] 3L_4536846_SNP [dm6]	T	C	2.681e^-10	2.475e^-6	INTRON CG11353
3L	4545240	3L_4545240_SNP [dm3] 3L_4545240_SNP [dm6]	G	A	2.681e^-10	2.475e^-6	INTRON CG11357	TF binding site BDTNP1_TFBS_twi
3L	4618616	3L_4618616_DEL [dm3] 3L_4618616_DEL [dm6]	GTCC	G	2.681e^-10	2.475e^-6	INTRON Src64B
3L	4619391	3L_4619391_SNP [dm3] 3L_4619391_SNP [dm6]	G	A	2.681e^-10	2.475e^-6	INTRON Src64B
3L	4622537	3L_4622537_SNP [dm3] 3L_4622537_SNP [dm6]	G	A	2.681e^-10	2.475e^-6	NON_SYNONYMOUS_CODING CG32246 INTRON Src64B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	4652568	3L_4652568_SNP [dm3] 3L_4652568_SNP [dm6]	G	C	2.681e^-10	2.475e^-6	INTRON axo
3L	4998935	3L_4998935_SNP [dm3] 3L_4998935_SNP [dm6]	A	G	2.681e^-10	2.475e^-6	INTRON Con	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	4999177	3L_4999177_SNP [dm3] 3L_4999177_SNP [dm6]	A	C	2.681e^-10	2.475e^-6	INTRON Con	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	514800	2L_514800_SNP [dm3] 2L_514800_SNP [dm6]	T	A	2.700e^-10	2.475e^-6	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	514899	2L_514899_SNP [dm3] 2L_514899_SNP [dm6]	A	G	2.700e^-10	2.475e^-6	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23079855	3R_23079855_SNP [dm3] 3R_27254133_SNP [dm6]	T	A	3.004e^-10	2.737e^-6	UPSTREAM pll INTRON TfIIA-L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	14752882	2L_14752882_SNP [dm3] 2L_14752882_SNP [dm6]	C	T	3.016e^-10	2.737e^-6	INTERGENIC
3L	5627452	3L_5627452_SNP [dm3] 3L_5634352_SNP [dm6]	A	G	3.044e^-10	2.749e^-6	INTRON Blimp-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13379447	3L_13379447_SNP [dm3] 3L_13386347_SNP [dm6]	G	A	3.101e^-10	2.787e^-6	UTR_3_PRIME CG10171 DOWNSTREAM CG14110	TF binding site BDTNP1_TFBS_twi
2R	15116706	2R_15116706_SNP [dm3] 2R_19229201_SNP [dm6]	G	A	3.150e^-10	2.817e^-6	DOWNSTREAM CG7137 INTRON cora	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	11051902	2L_11051902_SNP [dm3] 2L_11051902_SNP [dm6]	C	T	3.300e^-10	2.938e^-6	INTRON Samuel
2R	5301332	2R_5301332_SNP [dm3] 2R_9413827_SNP [dm6]	G	T	3.410e^-10	3.021e^-6	UPSTREAM wun2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3915602	2L_3915602_SNP [dm3] 2L_3915602_SNP [dm6]	T	G	3.496e^-10	3.042e^-6	INTRON fred	TF binding site BDTNP1_TFBS_dl
2R	7368767	2R_7368767_SNP [dm3] 2R_11481262_SNP [dm6]	G	A	3.562e^-10	3.042e^-6	INTRON inv
3L	3887116	3L_3887116_SNP [dm3] 3L_3887116_SNP [dm6]	T	C	3.652e^-10	3.042e^-6	INTERGENIC
3L	3967911	3L_3967911_SNP [dm3] 3L_3967911_SNP [dm6]	C	T	3.675e^-10	3.042e^-6	INTERGENIC
3L	4477454	3L_4477454_DEL [dm3] 3L_4477454_DEL [dm6]	TG	T	3.682e^-10	3.042e^-6	INTERGENIC
3L	9802952	3L_9802952_INS [dm3] 3L_9809852_INS [dm6]	C	CACC	3.683e^-10	3.042e^-6	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15117801	2R_15117801_SNP [dm3] 2R_19230296_SNP [dm6]	A	C	3.695e^-10	3.042e^-6	INTRON cora	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	4047728	3L_4047728_SNP [dm3] 3L_4047728_SNP [dm6]	G	A	3.702e^-10	3.042e^-6	UTR_5_PRIME Dpy-30L2 UPSTREAM Dpy-30L2 INTRON CG1136
3L	3658113	3L_3658113_SNP [dm3] 3L_3658113_SNP [dm6]	A	G	3.705e^-10	3.042e^-6	UPSTREAM CG43098 INTERGENIC
2R	15118032	2R_15118032_SNP [dm3] 2R_19230527_SNP [dm6]	A	T	3.806e^-10	3.042e^-6	INTRON cora	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	3720017	3L_3720017_SNP [dm3] 3L_3720017_SNP [dm6]	A	G	3.806e^-10	3.042e^-6	INTRON CG32264
3L	3884751	3L_3884751_SNP [dm3] 3L_3884751_SNP [dm6]	C	T	3.806e^-10	3.042e^-6	EXON CR43917
3L	4182931	3L_4182931_SNP [dm3] 3L_4182931_SNP [dm6]	T	C	3.859e^-10	3.042e^-6	INTRON CG18675 & 2 others
3L	4526973	3L_4526973_SNP [dm3] 3L_4526973_SNP [dm6]	T	C	3.859e^-10	3.042e^-6	INTRON Tie
3L	5435981	3L_5435981_SNP [dm3] 3L_5442881_SNP [dm6]	T	A	3.859e^-10	3.042e^-6	DOWNSTREAM CG34391 INTERGENIC
3L	5499760	3L_5499760_SNP [dm3] 3L_5506660_SNP [dm6]	A	T	3.859e^-10	3.042e^-6	INTRON CG34342
3L	5502266	3L_5502266_SNP [dm3] 3L_5509166_SNP [dm6]	A	G	3.859e^-10	3.042e^-6	INTRON CG34342	TF binding site mE1_TFBS_inv
3L	5503801	3L_5503801_SNP [dm3] 3L_5510701_SNP [dm6]	T	C	3.859e^-10	3.042e^-6	INTRON CG34342
3L	5570229	3L_5570229_SNP [dm3] 3L_5577129_SNP [dm6]	G	T	3.859e^-10	3.042e^-6	INTRON Msr-110
3L	5581308	3L_5581308_SNP [dm3] 3L_5588208_SNP [dm6]	G	A	3.859e^-10	3.042e^-6	NON_SYNONYMOUS_CODING l_3_psg2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5584495	3L_5584495_SNP [dm3] 3L_5591395_SNP [dm6]	C	T	3.859e^-10	3.042e^-6	NON_SYNONYMOUS_CODING spo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	5588040	3L_5588040_SNP [dm3] 3L_5594940_SNP [dm6]	T	G	3.859e^-10	3.042e^-6	UPSTREAM CG5150 INTRON CG10592	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5599698	3L_5599698_SNP [dm3] 3L_5606598_SNP [dm6]	G	T	3.859e^-10	3.042e^-6	NON_SYNONYMOUS_CODING mthl2 DOWNSTREAM Eaf6
3L	5601857	3L_5601857_SNP [dm3] 3L_5608757_SNP [dm6]	C	T	3.859e^-10	3.042e^-6	UPSTREAM Eaf6 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	5670364	3L_5670364_SNP [dm3] 3L_5677264_SNP [dm6]	C	T	3.859e^-10	3.042e^-6	INTRON sif	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5674273	3L_5674273_SNP [dm3] 3L_5681173_SNP [dm6]	G	A	3.859e^-10	3.042e^-6	INTRON sif
X	3323279	X_3323279_DEL [dm3] X_3429246_DEL [dm6]	TTGT	T	3.952e^-10	3.101e^-6	INTRON CR44999 & 1 other
3R	20302685	3R_20302685_SNP [dm3] 3R_24476963_SNP [dm6]	C	A	3.967e^-10	3.101e^-6	INTERGENIC
2L	11877685	2L_11877685_SNP [dm3] 2L_11877685_SNP [dm6]	C	T	4.049e^-10	3.152e^-6	UPSTREAM Pde1c INTRON Pde1c	TF binding site mE1_TFBS_sbb
3L	5881659	3L_5881659_SNP [dm3] 3L_5888559_SNP [dm6]	G	T	4.423e^-10	3.421e^-6	INTERGENIC
3L	3701867	3L_3701867_SNP [dm3] 3L_3701867_SNP [dm6]	T	C	4.432e^-10	3.421e^-6	INTERGENIC
2R	5301189	2R_5301189_SNP [dm3] 2R_9413684_SNP [dm6]	A	T	4.523e^-10	3.463e^-6	UPSTREAM wun2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5302622	2R_5302622_SNP [dm3] 2R_9415117_SNP [dm6]	G	A	4.523e^-10	3.463e^-6	SYNONYMOUS_CODING wun2 UTR_5_PRIME wun2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6997548	X_6997548_SNP [dm3] X_7103515_SNP [dm6]	T	G	4.598e^-10	3.506e^-6	SYNONYMOUS_CODING CG4617	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20888903	2L_20888903_SNP [dm3] 2L_20888903_SNP [dm6]	G	C	4.636e^-10	3.521e^-6	INTRON sky & 1 other
3L	3393099	3L_3393099_SNP [dm3] 3L_3393099_SNP [dm6]	T	C	4.691e^-10	3.548e^-6	UPSTREAM CR45737 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3702450	3L_3702450_SNP [dm3] 3L_3702450_SNP [dm6]	C	T	4.760e^-10	3.585e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9271807	3L_9271807_SNP [dm3] 3L_9278707_SNP [dm6]	C	A	4.810e^-10	3.594e^-6	SYNONYMOUS_CODING GluRIB
3L	9847953	3L_9847953_SNP [dm3] 3L_9854853_SNP [dm6]	G	A	4.810e^-10	3.594e^-6	UTR_5_PRIME RasGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	4484244	3L_4484244_SNP [dm3] 3L_4484244_SNP [dm6]	C	A	4.887e^-10	3.637e^-6	NON_SYNONYMOUS_CODING CG11350 DOWNSTREAM CG13722
3R	24202691	3R_24202691_SNP [dm3] 3R_28376969_SNP [dm6]	G	A	5.117e^-10	3.780e^-6	INTERGENIC
3R	18219642	3R_18219642_SNP [dm3] 3R_22393920_SNP [dm6]	T	C	5.120e^-10	3.780e^-6	INTRON CG13857
3L	4028378	3L_4028378_SNP [dm3] 3L_4028378_SNP [dm6]	T	A	5.178e^-10	3.801e^-6	UPSTREAM Gr64b & 1 other INTRON Gr64a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20578184	3R_20578184_SNP [dm3] 3R_24752462_SNP [dm6]	A	G	5.201e^-10	3.801e^-6	INTRON tld	TF binding site mE1_TFBS_cad
X	18787153	X_18787153_SNP [dm3] X_18893120_SNP [dm6]	G	A	5.216e^-10	3.801e^-6	SYNONYMOUS_CODING CG7358	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
3L	3621094	3L_3621094_DEL [dm3] 3L_3621094_DEL [dm6]	TTTTCGTTGAAAAGT...	T	5.257e^-10	3.801e^-6	UPSTREAM CG14974 INTERGENIC
3L	5399031	3L_5399031_SNP [dm3] 3L_5405931_SNP [dm6]	C	T	5.289e^-10	3.801e^-6	INTERGENIC
3L	5588039	3L_5588039_SNP [dm3] 3L_5594939_SNP [dm6]	C	A	5.296e^-10	3.801e^-6	UPSTREAM CG5150 INTRON CG10592	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	15969029	3R_15969029_SNP [dm3] 3R_20143307_SNP [dm6]	G	C	5.315e^-10	3.801e^-6	INTERGENIC
3L	4523480	3L_4523480_SNP [dm3] 3L_4523480_SNP [dm6]	G	T	5.329e^-10	3.801e^-6	INTRON Tie
3L	5398713	3L_5398713_SNP [dm3] 3L_5405613_SNP [dm6]	C	T	5.332e^-10	3.801e^-6	INTERGENIC
3L	4353172	3L_4353172_INS [dm3] 3L_4353172_INS [dm6]	T	TTCTTT	5.356e^-10	3.803e^-6	INTRON Cip4
3L	5559146	3L_5559146_SNP [dm3] 3L_5566046_SNP [dm6]	G	T	5.477e^-10	3.874e^-6	UTR_3_PRIME bc10 DOWNSTREAM Sras & 1 other	TF binding site mE1_TFBS_HSA
X	7237156	X_7237156_SNP [dm3] X_7343123_SNP [dm6]	T	A	5.705e^-10	3.961e^-6	DOWNSTREAM CBP INTRON CR44357 & 1 other
X	7237158	X_7237158_SNP [dm3] X_7343125_SNP [dm6]	C	T	5.705e^-10	3.961e^-6	DOWNSTREAM CBP INTRON CR44357 & 1 other
X	7237163	X_7237163_SNP [dm3] X_7343130_SNP [dm6]	C	T	5.705e^-10	3.961e^-6	DOWNSTREAM CBP INTRON CR44357 & 1 other
X	7237187	X_7237187_SNP [dm3] X_7343154_SNP [dm6]	A	T	5.705e^-10	3.961e^-6	DOWNSTREAM CBP INTRON CR44357 & 1 other
X	7237281	X_7237281_SNP [dm3] X_7343248_SNP [dm6]	A	T	5.705e^-10	3.961e^-6	DOWNSTREAM CBP INTRON CR44357 & 1 other
2L	2770382	2L_2770382_SNP [dm3] 2L_2770382_SNP [dm6]	T	C	6.192e^-10	4.235e^-6	SYNONYMOUS_CODING CG2862 UPSTREAM colt DOWNSTREAM CG15399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9707658	3L_9707658_SNP [dm3] 3L_9714558_SNP [dm6]	G	A	6.297e^-10	4.235e^-6	NON_SYNONYMOUS_CODING vsg UPSTREAM SH3PX1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	5301365	2R_5301365_SNP [dm3] 2R_9413860_SNP [dm6]	G	T	6.427e^-10	4.235e^-6	UPSTREAM wun2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	4865113	X_4865113_SNP [dm3] X_4971080_SNP [dm6]	G	A	6.558e^-10	4.235e^-6	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5169514	3L_5169514_SNP [dm3] 3L_5176414_SNP [dm6]	G	A	6.586e^-10	4.235e^-6	INTRON shep
3L	1955162	3L_1955162_SNP [dm3] 3L_1955162_SNP [dm6]	C	A	6.651e^-10	4.235e^-6	SYNONYMOUS_CODING mv	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	19413870	X_19413870_SNP [dm3] X_19519837_SNP [dm6]	A	G	6.670e^-10	4.235e^-6	SPLICE_SITE_REGION l_1_G0156 INTRON l_1_G0156	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19413875	X_19413875_SNP [dm3] X_19519842_SNP [dm6]	T	A	6.670e^-10	4.235e^-6	INTRON l_1_G0156	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12641184	3L_12641184_SNP [dm3] 3L_12648084_SNP [dm6]	G	C	6.750e^-10	4.235e^-6	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12931727	3R_12931727_SNP [dm3] 3R_17106005_SNP [dm6]	G	T	6.750e^-10	4.235e^-6	INTRON cher
2R	16927840	2R_16927840_SNP [dm3] 2R_21040335_SNP [dm6]	C	A	6.833e^-10	4.235e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16374817	2L_16374817_SNP [dm3] 2L_16374817_SNP [dm6]	A	G	6.942e^-10	4.235e^-6	INTERGENIC
2R	12624923	2R_12624923_SNP [dm3] 2R_16737418_SNP [dm6]	C	A	6.942e^-10	4.235e^-6	NON_SYNONYMOUS_CODING CG43104 UPSTREAM CR44464	TF binding site mE1_TFBS_HSA
2R	12625207	2R_12625207_SNP [dm3] 2R_16737702_SNP [dm6]	A	G	6.942e^-10	4.235e^-6	UPSTREAM CR44464 INTRON CG43104	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13864812	2R_13864812_SNP [dm3] 2R_17977307_SNP [dm6]	G	A	6.942e^-10	4.235e^-6	INTRON dpr13
3L	10032335	3L_10032335_SNP [dm3] 3L_10039235_SNP [dm6]	G	A	6.942e^-10	4.235e^-6	INTRON dpr6
3L	11948913	3L_11948913_SNP [dm3] 3L_11955813_SNP [dm6]	T	C	6.942e^-10	4.235e^-6	SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
3L	13479863	3L_13479863_SNP [dm3] 3L_13486763_SNP [dm6]	T	C	6.942e^-10	4.235e^-6	UPSTREAM Tgi & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13484368	3L_13484368_SNP [dm3] 3L_13491268_SNP [dm6]	G	C	6.942e^-10	4.235e^-6	INTRON Tgi
3L	17627055	3L_17627055_SNP [dm3] 3L_17633955_SNP [dm6]	G	T	6.942e^-10	4.235e^-6	UPSTREAM CR44567 INTRON CG7497
3L	5946442	3L_5946442_SNP [dm3] 3L_5953342_SNP [dm6]	C	G	6.942e^-10	4.235e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9535907	3L_9535907_SNP [dm3] 3L_9542807_SNP [dm6]	G	T	6.942e^-10	4.235e^-6	NON_SYNONYMOUS_CODING Ir67a
3L	9670906	3L_9670906_SNP [dm3] 3L_9677806_SNP [dm6]	T	C	6.942e^-10	4.235e^-6	INTRON fry	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	9748159	3L_9748159_SNP [dm3] 3L_9755059_SNP [dm6]	T	C	6.942e^-10	4.235e^-6	INTRON CG42268
3R	13590983	3R_13590983_SNP [dm3] 3R_17765261_SNP [dm6]	T	C	6.942e^-10	4.235e^-6	INTERGENIC
3R	18117835	3R_18117835_SNP [dm3] 3R_22292113_SNP [dm6]	G	A	6.942e^-10	4.235e^-6	UPSTREAM mir-1010 INTRON SKIP
3R	19339165	3R_19339165_SNP [dm3] 3R_23513443_SNP [dm6]	A	G	6.942e^-10	4.235e^-6	DOWNSTREAM Irk2 INTERGENIC
X	17167397	X_17167397_SNP [dm3] X_17273364_SNP [dm6]	T	C	6.942e^-10	4.235e^-6	INTRON f	TF binding site mE1_TFBS_cad
X	17410268	X_17410268_SNP [dm3] X_17516235_SNP [dm6]	C	A	6.942e^-10	4.235e^-6	INTRON CG43658
X	21928007	X_21928007_SNP [dm3] X_22526171_SNP [dm6]	C	T	6.942e^-10	4.235e^-6	INTRON CG17600
X	21928562	X_21928562_SNP [dm3] X_22526726_SNP [dm6]	G	C	6.942e^-10	4.235e^-6	INTRON CG17600
X	4676192	X_4676192_SNP [dm3] X_4782159_SNP [dm6]	A	G	6.942e^-10	4.235e^-6	DOWNSTREAM CG15471 INTERGENIC
X	4676388	X_4676388_SNP [dm3] X_4782355_SNP [dm6]	A	G	6.942e^-10	4.235e^-6	NON_SYNONYMOUS_CODING CG15471
X	4676521	X_4676521_SNP [dm3] X_4782488_SNP [dm6]	G	T	6.942e^-10	4.235e^-6	NON_SYNONYMOUS_CODING CG15471
X	4676605	X_4676605_SNP [dm3] X_4782572_SNP [dm6]	G	A	6.942e^-10	4.235e^-6	SYNONYMOUS_CODING CG15471
X	4676641	X_4676641_SNP [dm3] X_4782608_SNP [dm6]	G	A	6.942e^-10	4.235e^-6	SYNONYMOUS_CODING CG15471
X	6489165	X_6489165_SNP [dm3] X_6595132_SNP [dm6]	C	T	6.942e^-10	4.235e^-6	SYNONYMOUS_CODING Pat1	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	24204228	3R_24204228_SNP [dm3] 3R_28378506_SNP [dm6]	T	G	7.091e^-10	4.309e^-6	INTERGENIC
3R	21314727	3R_21314727_SNP [dm3] 3R_25489005_SNP [dm6]	G	A	7.110e^-10	4.309e^-6	SYNONYMOUS_CODING Dhap-at
3L	3654915	3L_3654915_SNP [dm3] 3L_3654915_SNP [dm6]	A	T	7.254e^-10	4.382e^-6	UPSTREAM CG10862 INTERGENIC
2R	8189076	2R_8189076_SNP [dm3] 2R_12301571_SNP [dm6]	T	C	7.360e^-10	4.432e^-6	DOWNSTREAM CG42700 & 1 other INTRON CG8850
3L	3884919	3L_3884919_SNP [dm3] 3L_3884919_SNP [dm6]	T	A	7.506e^-10	4.490e^-6	UPSTREAM CR43917 INTERGENIC
3L	3884921	3L_3884921_SNP [dm3] 3L_3884921_SNP [dm6]	A	G	7.506e^-10	4.490e^-6	UPSTREAM CR43917 INTERGENIC
2L	5615920	2L_5615920_SNP [dm3] 2L_5615920_SNP [dm6]	T	C	7.746e^-10	4.619e^-6	DOWNSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	7237246	X_7237246_SNP [dm3] X_7343213_SNP [dm6]	G	A	7.824e^-10	4.620e^-6	DOWNSTREAM CBP INTRON CR44357 & 1 other
X	7237260	X_7237260_SNP [dm3] X_7343227_SNP [dm6]	G	C	7.824e^-10	4.620e^-6	DOWNSTREAM CBP INTRON CR44357 & 1 other
2R	10689672	2R_10689672_SNP [dm3] 2R_14802167_SNP [dm6]	C	G	7.870e^-10	4.620e^-6	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7673024	3R_7673024_SNP [dm3] 3R_11847302_SNP [dm6]	C	G	7.887e^-10	4.620e^-6	INTRON CG6959
3L	4559365	3L_4559365_SNP [dm3] 3L_4559365_SNP [dm6]	T	A	7.897e^-10	4.620e^-6	INTRON CG42540
3L	5626591	3L_5626591_SNP [dm3] 3L_5633491_SNP [dm6]	G	A	7.897e^-10	4.620e^-6	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Trl
2L	15812215	2L_15812215_SNP [dm3] 2L_15812215_SNP [dm6]	T	A	8.068e^-10	4.684e^-6	UPSTREAM CG42876 INTERGENIC
X	6749009	X_6749009_SNP [dm3] X_6854976_SNP [dm6]	G	A	8.416e^-10	4.684e^-6	INTRON CG14434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3831373	3L_3831373_SNP [dm3] 3L_3831373_SNP [dm6]	G	A	8.442e^-10	4.684e^-6	INTRON enc
2L	11930291	2L_11930291_SNP [dm3] 2L_11930291_SNP [dm6]	G	T	8.862e^-10	4.684e^-6	INTERGENIC
2L	14015200	2L_14015200_SNP [dm3] 2L_14015200_SNP [dm6]	G	C	8.862e^-10	4.684e^-6	INTRON bgm
3L	11948849	3L_11948849_SNP [dm3] 3L_11955749_SNP [dm6]	A	T	8.862e^-10	4.684e^-6	NON_SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
3L	11948957	3L_11948957_SNP [dm3] 3L_11955857_SNP [dm6]	A	G	8.862e^-10	4.684e^-6	NON_SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
X	8449395	X_8449395_SNP [dm3] X_8555362_SNP [dm6]	G	C	8.876e^-10	4.684e^-6	UTR_3_PRIME IntS4 DOWNSTREAM Nrg	TF binding site mE1_TFBS_cad
2L	16293912	2L_16293912_MNP [dm3] 2L_16293912_MNP [dm6]	TGC	CAT	8.888e^-10	4.684e^-6	UPSTREAM CG13258 & 2 others INTERGENIC	transposable element FlyBase
2L	16293938	2L_16293938_MNP [dm3] 2L_16293938_MNP [dm6]	GAA	AGC	8.888e^-10	4.684e^-6	UPSTREAM CG13258 & 2 others INTERGENIC
2L	16293942	2L_16293942_SNP [dm3] 2L_16293942_SNP [dm6]	G	A	8.888e^-10	4.684e^-6	UPSTREAM CG13258 & 2 others INTERGENIC
2L	16293950	2L_16293950_SNP [dm3] 2L_16293950_SNP [dm6]	T	A	8.888e^-10	4.684e^-6	UPSTREAM CG13258 & 2 others INTERGENIC
2L	16293955	2L_16293955_SNP [dm3] 2L_16293955_SNP [dm6]	T	G	8.888e^-10	4.684e^-6	UPSTREAM CG13258 & 2 others INTERGENIC
2L	16293965	2L_16293965_SNP [dm3] 2L_16293965_SNP [dm6]	C	G	8.888e^-10	4.684e^-6	UPSTREAM CG13258 & 2 others INTERGENIC
X	5030492	X_5030492_SNP [dm3] X_5136459_SNP [dm6]	A	G	8.917e^-10	4.684e^-6	INTRON rg & 1 other
3L	6581455	3L_6581455_SNP [dm3] 3L_6588355_SNP [dm6]	C	A	8.996e^-10	4.684e^-6	INTRON CG18769 & 1 other
3L	6582243	3L_6582243_SNP [dm3] 3L_6589143_SNP [dm6]	G	A	8.996e^-10	4.684e^-6	INTRON CG18769 & 1 other
2L	20322730	2L_20322730_SNP [dm3] 2L_20322730_SNP [dm6]	C	T	9.090e^-10	4.684e^-6	INTRON spir	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11613815	2R_11613815_SNP [dm3] 2R_15726310_SNP [dm6]	G	A	9.143e^-10	4.684e^-6	INTERGENIC	TF binding site mE1_TFBS_cad
2L	17087215	2L_17087215_SNP [dm3] 2L_17087215_SNP [dm6]	T	C	9.229e^-10	4.684e^-6	UPSTREAM CG12620 DOWNSTREAM CR43819 INTERGENIC
3L	16558699	3L_16558699_SNP [dm3] 3L_16565599_SNP [dm6]	C	A	9.308e^-10	4.684e^-6	INTRON Mipp1
2R	16945082	2R_16945082_SNP [dm3] 2R_21057577_SNP [dm6]	T	G	9.395e^-10	4.684e^-6	UPSTREAM cpa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16949234	2R_16949234_SNP [dm3] 2R_21061729_SNP [dm6]	T	A	9.395e^-10	4.684e^-6	NON_SYNONYMOUS_CODING Cht8 DOWNSTREAM mRpL54
2R	16949797	2R_16949797_SNP [dm3] 2R_21062292_SNP [dm6]	C	T	9.395e^-10	4.684e^-6	DOWNSTREAM mRpL54 & 1 other INTRON Cht8	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16950373	2R_16950373_SNP [dm3] 2R_21062868_SNP [dm6]	C	T	9.395e^-10	4.684e^-6	SYNONYMOUS_CODING Cht8 DOWNSTREAM Cht12	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16950799	2R_16950799_SNP [dm3] 2R_21063294_SNP [dm6]	C	T	9.395e^-10	4.684e^-6	NON_SYNONYMOUS_CODING Cht12 DOWNSTREAM Cht8
2R	16950869	2R_16950869_SNP [dm3] 2R_21063364_SNP [dm6]	C	T	9.395e^-10	4.684e^-6	SYNONYMOUS_CODING Cht12 DOWNSTREAM Cht8
2R	16951151	2R_16951151_SNP [dm3] 2R_21063646_SNP [dm6]	C	A	9.395e^-10	4.684e^-6	SYNONYMOUS_CODING Cht12 DOWNSTREAM Cht8	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16951298	2R_16951298_SNP [dm3] 2R_21063793_SNP [dm6]	G	C	9.395e^-10	4.684e^-6	SYNONYMOUS_CODING Cht12 DOWNSTREAM Cht8	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16952877	2R_16952877_SNP [dm3] 2R_21065372_SNP [dm6]	T	A	9.395e^-10	4.684e^-6	UPSTREAM Cht12 DOWNSTREAM Cht4 INTERGENIC	TF binding site mE1_TFBS_cad
2R	16954028	2R_16954028_SNP [dm3] 2R_21066523_SNP [dm6]	C	A	9.395e^-10	4.684e^-6	NON_SYNONYMOUS_CODING Cht4	TF binding site mE1_TFBS_cad
2R	16954040	2R_16954040_SNP [dm3] 2R_21066535_SNP [dm6]	G	A	9.395e^-10	4.684e^-6	SYNONYMOUS_CODING Cht4	TF binding site mE1_TFBS_cad
2R	16954759	2R_16954759_SNP [dm3] 2R_21067254_SNP [dm6]	T	A	9.395e^-10	4.684e^-6	UPSTREAM Cht4 DOWNSTREAM Cht9 INTERGENIC	TF binding site mE1_TFBS_cad
2R	17440366	2R_17440366_SNP [dm3] 2R_21552861_SNP [dm6]	T	C	9.395e^-10	4.684e^-6	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14399675	2R_14399675_SNP [dm3] 2R_18512170_SNP [dm6]	G	T	9.400e^-10	4.684e^-6	INTERGENIC
3L	730897	3L_730897_SNP [dm3] 3L_730897_SNP [dm6]	C	A	9.400e^-10	4.684e^-6	INTERGENIC	TF binding site mE1_TFBS_inv
3R	18111102	3R_18111102_SNP [dm3] 3R_22285380_SNP [dm6]	C	A	9.400e^-10	4.684e^-6	INTRON SKIP	TF binding site mE1_TFBS_chinmo
3R	19339116	3R_19339116_DEL [dm3] 3R_23513394_DEL [dm6]	TT	T	9.400e^-10	4.684e^-6	DOWNSTREAM Irk2 INTERGENIC
3R	23796170	3R_23796170_SNP [dm3] 3R_27970448_SNP [dm6]	G	A	9.400e^-10	4.684e^-6	INTRON betaTub97EF
3R	3774060	3R_3774060_SNP [dm3] 3R_7948338_SNP [dm6]	A	T	9.400e^-10	4.684e^-6	INTRON dsx
X	19020090	X_19020090_SNP [dm3] X_19126057_SNP [dm6]	G	C	9.400e^-10	4.684e^-6	NON_SYNONYMOUS_CODING tgy
3R	25945808	3R_25945808_SNP [dm3] 3R_30120086_SNP [dm6]	G	T	9.437e^-10	4.684e^-6	INTRON sima
2R	2975474	2R_2975474_SNP [dm3] 2R_7087969_SNP [dm6]	C	G	9.437e^-10	4.684e^-6	INTRON esn
2R	2975562	2R_2975562_SNP [dm3] 2R_7088057_SNP [dm6]	C	A	9.437e^-10	4.684e^-6	INTRON esn
2R	2998051	2R_2998051_SNP [dm3] 2R_7110546_SNP [dm6]	G	T	9.437e^-10	4.684e^-6	INTRON esn
2R	2999896	2R_2999896_SNP [dm3] 2R_7112391_SNP [dm6]	G	T	9.437e^-10	4.684e^-6	INTRON esn	TF binding site mE1_TFBS_chinmo
2R	13618083	2R_13618083_SNP [dm3] 2R_17730578_SNP [dm6]	A	T	9.455e^-10	4.684e^-6	INTRON CG4984 & 1 other
3L	9450826	3L_9450826_SNP [dm3] 3L_9457726_SNP [dm6]	A	C	9.455e^-10	4.684e^-6	UPSTREAM CG3552 & 1 other INTRON CG3552	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9451654	3L_9451654_SNP [dm3] 3L_9458554_SNP [dm6]	C	G	9.455e^-10	4.684e^-6	SYNONYMOUS_CODING CG3552 UPSTREAM CG3437 DOWNSTREAM CG3434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	9451702	3L_9451702_SNP [dm3] 3L_9458602_SNP [dm6]	T	A	9.455e^-10	4.684e^-6	SYNONYMOUS_CODING CG3552 UPSTREAM CG3437 DOWNSTREAM CG3434	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	9459557	3L_9459557_SNP [dm3] 3L_9466457_SNP [dm6]	C	G	9.455e^-10	4.684e^-6	INTRON CG44838	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	18123225	X_18123225_SNP [dm3] X_18229192_SNP [dm6]	G	C	9.455e^-10	4.684e^-6	UPSTREAM CR45622 INTERGENIC
2L	10003145	2L_10003145_SNP [dm3] 2L_10003145_SNP [dm6]	A	G	9.466e^-10	4.684e^-6	UPSTREAM SoYb & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	18627325	2L_18627325_SNP [dm3] 2L_18627325_SNP [dm6]	A	T	9.466e^-10	4.684e^-6	INTRON MESR3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	4872347	2L_4872347_SNP [dm3] 2L_4872347_SNP [dm6]	C	G	9.466e^-10	4.684e^-6	SYNONYMOUS_CODING pog	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	17836188	2R_17836188_SNP [dm3] 2R_21948683_SNP [dm6]	C	A	9.466e^-10	4.684e^-6	INTERGENIC
2R	17836201	2R_17836201_SNP [dm3] 2R_21948696_SNP [dm6]	C	G	9.466e^-10	4.684e^-6	INTERGENIC
X	5860553	X_5860553_SNP [dm3] X_5966520_SNP [dm6]	C	G	9.466e^-10	4.684e^-6	UTR_5_PRIME Grip	TF binding site BDTNP1_TFBS_dl
3L	1526932	3L_1526932_SNP [dm3] 3L_1526932_SNP [dm6]	A	G	9.708e^-10	4.742e^-6	INTRON CG12090	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12351621	2L_12351621_SNP [dm3] 2L_12351621_SNP [dm6]	C	T	9.762e^-10	4.742e^-6	INTRON bru-2
2R	14369580	2R_14369580_SNP [dm3] 2R_18482075_SNP [dm6]	C	A	9.762e^-10	4.742e^-6	INTRON CG30116
3L	8188620	3L_8188620_SNP [dm3] 3L_8195520_SNP [dm6]	C	G	9.762e^-10	4.742e^-6	NON_SYNONYMOUS_CODING MED24 DOWNSTREAM Ubc12
3R	15251169	3R_15251169_SNP [dm3] 3R_19425447_SNP [dm6]	A	C	9.762e^-10	4.742e^-6	UPSTREAM CG3517 INTRON CG31221
X	21057239	X_21057239_SNP [dm3] X_21186212_SNP [dm6]	A	T	9.762e^-10	4.742e^-6	INTERGENIC
X	21981731	X_21981731_SNP [dm3] X_22579895_SNP [dm6]	T	A	9.762e^-10	4.742e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9347837	2L_9347837_SNP [dm3] 2L_9347837_SNP [dm6]	C	T	1.014e^-9	4.911e^-6	DOWNSTREAM CR44802 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	3777044	X_3777044_SNP [dm3] X_3883011_SNP [dm6]	C	T	1.061e^-9	5.129e^-6	DOWNSTREAM VhaAC39-1 INTERGENIC
2L	17839473	2L_17839473_INS [dm3] 2L_17839473_INS [dm6]	T	TTT	1.069e^-9	5.153e^-6	INTRON CadN2
3L	3841161	3L_3841161_SNP [dm3] 3L_3841161_SNP [dm6]	A	T	1.074e^-9	5.165e^-6	UTR_3_PRIME enc
3L	18252379	3L_18252379_INS [dm3] 3L_18259279_INS [dm6]	G	GTACA	1.098e^-9	5.185e^-6	INTERGENIC
2L	5509194	2L_5509194_SNP [dm3] 2L_5509194_SNP [dm6]	T	A	1.104e^-9	5.185e^-6	INTERGENIC
2L	5509212	2L_5509212_DEL [dm3] 2L_5509212_DEL [dm6]	CGATATTATATCG...	C	1.104e^-9	5.185e^-6	INTERGENIC
2L	5509234	2L_5509234_SNP [dm3] 2L_5509234_SNP [dm6]	T	C	1.104e^-9	5.185e^-6	INTERGENIC
2L	5509240	2L_5509240_SNP [dm3] 2L_5509240_SNP [dm6]	A	G	1.104e^-9	5.185e^-6	INTERGENIC
2L	5509249	2L_5509249_SNP [dm3] 2L_5509249_SNP [dm6]	T	A	1.104e^-9	5.185e^-6	INTERGENIC
X	4751881	X_4751881_SNP [dm3] X_4857848_SNP [dm6]	A	G	1.104e^-9	5.185e^-6	INTRON CG42594
X	6843879	X_6843879_SNP [dm3] X_6949846_SNP [dm6]	G	A	1.104e^-9	5.185e^-6	UPSTREAM CR4575 INTRON CG14431
X	7238665	X_7238665_SNP [dm3] X_7344632_SNP [dm6]	T	C	1.104e^-9	5.185e^-6	INTRON CR44357 & 1 other
2L	5332941	2L_5332941_SNP [dm3] 2L_5332941_SNP [dm6]	C	G	1.128e^-9	5.288e^-6	INTRON fusl	TF binding site mE1_TFBS_cad
2L	1990307	2L_1990307_INS [dm3] 2L_1990307_INS [dm6]	A	AA	1.158e^-9	5.399e^-6	EXON CR42874
2L	1990336	2L_1990336_SNP [dm3] 2L_1990336_SNP [dm6]	C	T	1.158e^-9	5.399e^-6	EXON CR42874
2R	7958159	2R_7958159_INS [dm3] 2R_12070654_INS [dm6]	G	GTGTCCTG	1.163e^-9	5.410e^-6	INTRON CG8888
3L	1733901	3L_1733901_SNP [dm3] 3L_1733901_SNP [dm6]	G	A	1.205e^-9	5.520e^-6	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16867487	2R_16867487_SNP [dm3] 2R_20979982_SNP [dm6]	T	C	1.210e^-9	5.520e^-6	INTRON CG9313
2R	17125021	2R_17125021_SNP [dm3] 2R_21237516_SNP [dm6]	A	C	1.237e^-9	5.520e^-6	INTRON ASPP
2L	21056327	2L_21056327_SNP [dm3] 2L_21056327_SNP [dm6]	A	G	1.239e^-9	5.520e^-6	NON_SYNONYMOUS_CODING Itgbetanu
2L	9186538	2L_9186538_SNP [dm3] 2L_9186538_SNP [dm6]	C	T	1.244e^-9	5.520e^-6	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16294123	2L_16294123_SNP [dm3] 2L_16294123_SNP [dm6]	A	G	1.246e^-9	5.520e^-6	UPSTREAM Cyp303a1 & 1 other INTERGENIC
X	19414405	X_19414405_SNP [dm3] X_19520372_SNP [dm6]	T	A	1.254e^-9	5.520e^-6	INTRON l_1_G0156	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	2963151	2R_2963151_SNP [dm3] 2R_7075646_SNP [dm6]	C	T	1.255e^-9	5.520e^-6	INTERGENIC
2R	16951437	2R_16951437_SNP [dm3] 2R_21063932_SNP [dm6]	T	G	1.260e^-9	5.520e^-6	NON_SYNONYMOUS_CODING Cht12 DOWNSTREAM Cht8
2L	16018086	2L_16018086_SNP [dm3] 2L_16018086_SNP [dm6]	G	A	1.266e^-9	5.520e^-6	INTRON beat-Ic
2L	16021765	2L_16021765_SNP [dm3] 2L_16021765_SNP [dm6]	C	T	1.266e^-9	5.520e^-6	INTRON beat-Ic
2L	16023050	2L_16023050_SNP [dm3] 2L_16023050_SNP [dm6]	C	T	1.266e^-9	5.520e^-6	INTRON beat-Ic
3R	19857565	3R_19857565_SNP [dm3] 3R_24031843_SNP [dm6]	T	A	1.269e^-9	5.520e^-6	UPSTREAM Ime4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12545689	2R_12545689_SNP [dm3] 2R_16658184_SNP [dm6]	A	G	1.270e^-9	5.520e^-6	INTRON Picot
2R	12546110	2R_12546110_SNP [dm3] 2R_16658605_SNP [dm6]	G	T	1.270e^-9	5.520e^-6	INTRON Picot
2R	12546217	2R_12546217_SNP [dm3] 2R_16658712_SNP [dm6]	T	G	1.270e^-9	5.520e^-6	INTRON Picot
2R	12547479	2R_12547479_SNP [dm3] 2R_16659974_SNP [dm6]	T	G	1.270e^-9	5.520e^-6	UPSTREAM Picot INTRON Picot
2R	16942754	2R_16942754_SNP [dm3] 2R_21055249_SNP [dm6]	A	C	1.272e^-9	5.520e^-6	INTRON shg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16953922	2R_16953922_SNP [dm3] 2R_21066417_SNP [dm6]	T	C	1.272e^-9	5.520e^-6	NON_SYNONYMOUS_CODING Cht4 SPLICE_SITE_REGION Cht4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3793726	3R_3793726_SNP [dm3] 3R_7968004_SNP [dm6]	T	C	1.272e^-9	5.520e^-6	UPSTREAM dsx INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	3800374	3R_3800374_SNP [dm3] 3R_7974652_SNP [dm6]	A	G	1.272e^-9	5.520e^-6	SYNONYMOUS_CODING CD98hc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	3801214	3R_3801214_SNP [dm3] 3R_7975492_SNP [dm6]	C	T	1.272e^-9	5.520e^-6	NON_SYNONYMOUS_CODING CD98hc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14730490	2R_14730490_SNP [dm3] 2R_18842985_SNP [dm6]	T	G	1.272e^-9	5.520e^-6	SYNONYMOUS_CODING CG15099	TF binding site mE1_TFBS_cad
3R	12667475	3R_12667475_SNP [dm3] 3R_16841753_SNP [dm6]	A	T	1.272e^-9	5.520e^-6	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	16001993	2L_16001993_SNP [dm3] 2L_16001993_SNP [dm6]	T	C	1.278e^-9	5.520e^-6	DOWNSTREAM CG34167 INTRON beat-Ic EXON CR43825
2R	16367296	2R_16367296_SNP [dm3] 2R_20479791_SNP [dm6]	A	G	1.280e^-9	5.520e^-6	DOWNSTREAM CG12484 INTERGENIC
2L	12406299	2L_12406299_SNP [dm3] 2L_12406299_SNP [dm6]	A	T	1.283e^-9	5.520e^-6	DOWNSTREAM vir-1 INTRON vir-1
2L	8332477	2L_8332477_SNP [dm3] 2L_8332477_SNP [dm6]	C	T	1.283e^-9	5.520e^-6	SYNONYMOUS_CODING CG14275
2R	16952571	2R_16952571_SNP [dm3] 2R_21065066_SNP [dm6]	A	G	1.285e^-9	5.520e^-6	UPSTREAM Cht12 DOWNSTREAM Cht4 INTERGENIC
2L	8746438	2L_8746438_SNP [dm3] 2L_8746438_SNP [dm6]	T	A	1.287e^-9	5.520e^-6	INTERGENIC
2L	8746486	2L_8746486_SNP [dm3] 2L_8746486_SNP [dm6]	A	T	1.287e^-9	5.520e^-6	INTERGENIC
2R	17163596	2R_17163596_SNP [dm3] 2R_21276091_SNP [dm6]	T	A	1.287e^-9	5.520e^-6	INTRON Rgk3
3L	6093045	3L_6093045_SNP [dm3] 3L_6099945_SNP [dm6]	C	A	1.287e^-9	5.520e^-6	INTRON Ets65A
X	19414337	X_19414337_SNP [dm3] X_19520304_SNP [dm6]	A	T	1.289e^-9	5.520e^-6	SPLICE_SITE_REGION l_1_G0156 INTRON l_1_G0156	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	2514490	3L_2514490_SNP [dm3] 3L_2514490_SNP [dm6]	T	A	1.291e^-9	5.520e^-6	INTRON Spn	TF binding site mE1_TFBS_sbb
3R	15623291	3R_15623291_SNP [dm3] 3R_19797569_SNP [dm6]	T	C	1.311e^-9	5.584e^-6	INTRON bnl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	10780084	2L_10780084_SNP [dm3] 2L_10780084_SNP [dm6]	C	A	1.313e^-9	5.584e^-6	INTRON CG31869
3R	23806158	3R_23806158_SNP [dm3] 3R_27980436_SNP [dm6]	T	C	1.322e^-9	5.584e^-6	INTRON betaTub97EF
X	20364652	X_20364652_SNP [dm3] X_20493625_SNP [dm6]	C	T	1.322e^-9	5.584e^-6	INTRON RhoGAP19D
2R	2954708	2R_2954708_SNP [dm3] 2R_7067203_SNP [dm6]	T	A	1.327e^-9	5.584e^-6	INTERGENIC	TF binding site mE1_TFBS_cad
2R	2961259	2R_2961259_SNP [dm3] 2R_7073754_SNP [dm6]	G	A	1.327e^-9	5.584e^-6	SYNONYMOUS_CODING CG12831
2R	2995720	2R_2995720_SNP [dm3] 2R_7108215_SNP [dm6]	C	T	1.327e^-9	5.584e^-6	INTRON esn
2R	10914320	2R_10914320_SNP [dm3] 2R_15026815_SNP [dm6]	G	A	1.331e^-9	5.589e^-6	INTRON hbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
X	3776048	X_3776048_SNP [dm3] X_3882015_SNP [dm6]	A	C	1.349e^-9	5.654e^-6	INTRON VhaAC39-1	TF binding site mE1_TFBS_cad
2R	2426570	2R_2426570_SNP [dm3] 2R_6539065_SNP [dm6]	G	T	1.372e^-9	5.722e^-6	INTRON jing	transposable element FlyBase
2R	20180585	2R_20180585_SNP [dm3] 2R_24293062_SNP [dm6]	C	T	1.375e^-9	5.722e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	5977637	X_5977637_SNP [dm3] X_6083604_SNP [dm6]	G	A	1.375e^-9	5.722e^-6	UTR_3_PRIME raptor & 1 other
3R	19482379	3R_19482379_SNP [dm3] 3R_23656657_SNP [dm6]	A	T	1.398e^-9	5.807e^-6	INTRON CG31145
3R	7674007	3R_7674007_SNP [dm3] 3R_11848285_SNP [dm6]	G	C	1.422e^-9	5.893e^-6	INTRON CG6959	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23642832	3R_23642832_SNP [dm3] 3R_27817110_SNP [dm6]	C	T	1.483e^-9	6.129e^-6	INTRON CG34353	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10423569	3L_10423569_SNP [dm3] 3L_10430469_SNP [dm6]	G	C	1.500e^-9	6.186e^-6	SYNONYMOUS_CODING Ir67b
2L	10211379	2L_10211379_SNP [dm3] 2L_10211379_SNP [dm6]	G	A	1.508e^-9	6.206e^-6	UPSTREAM CG5727 INTRON CG4901
X	9915465	X_9915465_INS [dm3] X_10021432_INS [dm6]	T	TGTAT	1.513e^-9	6.214e^-6	INTRON Cht6
3R	9835545	3R_9835545_SNP [dm3] 3R_14009823_SNP [dm6]	A	T	1.590e^-9	6.516e^-6	INTRON rdx
2R	10589715	2R_10589715_SNP [dm3] 2R_14702210_SNP [dm6]	G	A	1.608e^-9	6.574e^-6	INTRON mspo
2L	1990282	2L_1990282_SNP [dm3] 2L_1990282_SNP [dm6]	G	A	1.616e^-9	6.594e^-6	EXON CR42874
2L	1990341	2L_1990341_SNP [dm3] 2L_1990341_SNP [dm6]	A	G	1.626e^-9	6.621e^-6	EXON CR42874
3L	5153280	3L_5153280_SNP [dm3] 3L_5160180_SNP [dm6]	T	C	1.668e^-9	6.747e^-6	UTR_3_PRIME shep DOWNSTREAM shep
2L	16017182	2L_16017182_SNP [dm3] 2L_16017182_SNP [dm6]	A	C	1.668e^-9	6.747e^-6	INTRON beat-Ic
2L	16021560	2L_16021560_SNP [dm3] 2L_16021560_SNP [dm6]	A	G	1.668e^-9	6.747e^-6	INTRON beat-Ic
3L	11898260	3L_11898260_SNP [dm3] 3L_11905160_SNP [dm6]	A	G	1.684e^-9	6.783e^-6	INTRON CG44837
2R	14962666	2R_14962666_SNP [dm3] 2R_19075161_SNP [dm6]	C	A	1.684e^-9	6.783e^-6	INTRON 5-HT1A
2L	1448610	2L_1448610_SNP [dm3] 2L_1448610_SNP [dm6]	C	T	1.694e^-9	6.792e^-6	INTERGENIC
X	3774515	X_3774515_SNP [dm3] X_3880482_SNP [dm6]	C	T	1.709e^-9	6.792e^-6	UPSTREAM VhaAC39-1 DOWNSTREAM CG2930 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	16022843	2L_16022843_SNP [dm3] 2L_16022843_SNP [dm6]	G	T	1.715e^-9	6.792e^-6	INTRON beat-Ic
3R	14374440	3R_14374440_SNP [dm3] 3R_18548718_SNP [dm6]	A	G	1.715e^-9	6.792e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16021452	2L_16021452_SNP [dm3] 2L_16021452_SNP [dm6]	T	A	1.718e^-9	6.792e^-6	INTRON beat-Ic
2L	16023332	2L_16023332_SNP [dm3] 2L_16023332_SNP [dm6]	G	C	1.726e^-9	6.792e^-6	INTRON beat-Ic
2L	16023371	2L_16023371_SNP [dm3] 2L_16023371_SNP [dm6]	G	A	1.726e^-9	6.792e^-6	INTRON beat-Ic
2L	16023450	2L_16023450_SNP [dm3] 2L_16023450_SNP [dm6]	G	A	1.726e^-9	6.792e^-6	INTRON beat-Ic
3R	14537372	3R_14537372_SNP [dm3] 3R_18711650_SNP [dm6]	T	C	1.727e^-9	6.792e^-6	INTRON VAChT & 1 other
3R	19857678	3R_19857678_SNP [dm3] 3R_24031956_SNP [dm6]	C	T	1.727e^-9	6.792e^-6	UPSTREAM Ime4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20244734	2L_20244734_SNP [dm3] 2L_20244734_SNP [dm6]	A	G	1.738e^-9	6.792e^-6	INTERGENIC
2L	20265321	2L_20265321_SNP [dm3] 2L_20265321_SNP [dm6]	C	T	1.738e^-9	6.792e^-6	UPSTREAM CG17570 INTERGENIC
3R	14486521	3R_14486521_SNP [dm3] 3R_18660799_SNP [dm6]	C	T	1.742e^-9	6.792e^-6	SYNONYMOUS_CODING CstF-64 DOWNSTREAM Cpsf73	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	10470277	2L_10470277_SNP [dm3] 2L_10470277_SNP [dm6]	C	G	1.742e^-9	6.792e^-6	INTRON RluA-1
3R	14486962	3R_14486962_SNP [dm3] 3R_18661240_SNP [dm6]	G	A	1.756e^-9	6.792e^-6	SYNONYMOUS_CODING Cpsf73 DOWNSTREAM CstF-64	TF binding site mE1_TFBS_cad
3R	14487037	3R_14487037_SNP [dm3] 3R_18661315_SNP [dm6]	G	A	1.756e^-9	6.792e^-6	SYNONYMOUS_CODING Cpsf73 DOWNSTREAM CstF-64	TF binding site mE1_TFBS_cad
3R	19390883	3R_19390883_SNP [dm3] 3R_23565161_SNP [dm6]	A	C	1.756e^-9	6.792e^-6	INTRON beat-IV
3R	19390911	3R_19390911_DEL [dm3] 3R_23565189_DEL [dm6]	CA	T	1.756e^-9	6.792e^-6	INTRON beat-IV
3R	19390974	3R_19390974_SNP [dm3] 3R_23565252_SNP [dm6]	C	T	1.756e^-9	6.792e^-6	INTRON beat-IV
2R	7526647	2R_7526647_SNP [dm3] 2R_11639142_SNP [dm6]	G	T	1.772e^-9	6.815e^-6	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6073621	2R_6073621_SNP [dm3] 2R_10186116_SNP [dm6]	T	C	1.780e^-9	6.815e^-6	INTRON KCNQ
2L	16015698	2L_16015698_SNP [dm3] 2L_16015698_SNP [dm6]	T	A	1.781e^-9	6.815e^-6	INTRON beat-Ic
2L	16016955	2L_16016955_SNP [dm3] 2L_16016955_SNP [dm6]	G	T	1.781e^-9	6.815e^-6	INTRON beat-Ic
3R	15634995	3R_15634995_SNP [dm3] 3R_19809273_SNP [dm6]	C	A	1.783e^-9	6.815e^-6	INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14764836	2L_14764836_SNP [dm3] 2L_14764836_SNP [dm6]	T	C	1.787e^-9	6.815e^-6	DOWNSTREAM CSN1a INTERGENIC
2R	16944039	2R_16944039_SNP [dm3] 2R_21056534_SNP [dm6]	C	A	1.788e^-9	6.815e^-6	UTR_5_PRIME shg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3R	15622397	3R_15622397_SNP [dm3] 3R_19796675_SNP [dm6]	G	T	1.800e^-9	6.833e^-6	SYNONYMOUS_CODING bnl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
2R	16609987	2R_16609987_SNP [dm3] 2R_20722482_SNP [dm6]	C	T	1.802e^-9	6.833e^-6	UPSTREAM CR44660 INTRON dpr
2R	16952586	2R_16952586_SNP [dm3] 2R_21065081_SNP [dm6]	C	A	1.807e^-9	6.833e^-6	UPSTREAM Cht12 DOWNSTREAM Cht4 INTERGENIC
3R	18117587	3R_18117587_INS [dm3] 3R_22291865_INS [dm6]	A	AGGAGCA	1.807e^-9	6.833e^-6	INTRON SKIP
2L	16293922	2L_16293922_SNP [dm3] 2L_16293922_SNP [dm6]	C	T	1.820e^-9	6.869e^-6	UPSTREAM CG13258 & 2 others INTERGENIC	transposable element FlyBase
2R	2987229	2R_2987229_SNP [dm3] 2R_7099724_SNP [dm6]	A	G	1.867e^-9	7.019e^-6	INTRON esn
2R	2987234	2R_2987234_SNP [dm3] 2R_7099729_SNP [dm6]	G	A	1.867e^-9	7.019e^-6	INTRON esn
X	5119380	X_5119380_SNP [dm3] X_5225347_SNP [dm6]	C	A	1.926e^-9	7.224e^-6	SYNONYMOUS_CODING rg UTR_3_PRIME CG15465 INTRON CG15465 & 1 other
3L	4865765	3L_4865765_SNP [dm3] 3L_4865765_SNP [dm6]	T	C	1.971e^-9	7.377e^-6	INTRON CG17150	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1990293	2L_1990293_SNP [dm3] 2L_1990293_SNP [dm6]	G	A	1.995e^-9	7.454e^-6	EXON CR42874
3L	4626789	3L_4626789_SNP [dm3] 3L_4626789_SNP [dm6]	C	A	2.011e^-9	7.498e^-6	UTR_5_PRIME Rpd3 UPSTREAM Src64B EXON CR45438	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9196116	2L_9196116_SNP [dm3] 2L_9196116_SNP [dm6]	C	G	2.054e^-9	7.642e^-6	INTRON tai
3L	18207156	3L_18207156_SNP [dm3] 3L_18214056_SNP [dm6]	C	T	2.069e^-9	7.684e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3542860	3L_3542860_SNP [dm3] 3L_3542860_SNP [dm6]	G	T	2.135e^-9	7.904e^-6	UPSTREAM Eip63E INTRON Eip63E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA
3L	9970757	3L_9970757_SNP [dm3] 3L_9977657_SNP [dm6]	A	G	2.137e^-9	7.904e^-6	INTRON dpr6
2L	16027330	2L_16027330_SNP [dm3] 2L_16027330_SNP [dm6]	C	T	2.258e^-9	8.319e^-6	INTRON beat-Ic
2L	9199928	2L_9199928_SNP [dm3] 2L_9199928_SNP [dm6]	T	G	2.258e^-9	8.319e^-6	INTRON tai
2R	16952513	2R_16952513_SNP [dm3] 2R_21065008_SNP [dm6]	T	G	2.299e^-9	8.435e^-6	UPSTREAM Cht12 DOWNSTREAM Cht4 INTERGENIC
2L	9453519	2L_9453519_INS [dm3] 2L_9453519_INS [dm6]	T	TT	2.303e^-9	8.435e^-6	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	9453521	2L_9453521_SNP [dm3] 2L_9453521_SNP [dm6]	T	G	2.303e^-9	8.435e^-6	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	18252857	3L_18252857_DEL [dm3] 3L_18259757_DEL [dm6]	TT	T	2.361e^-9	8.616e^-6	INTERGENIC
3R	23801883	3R_23801883_SNP [dm3] 3R_27976161_SNP [dm6]	G	C	2.362e^-9	8.616e^-6	INTRON betaTub97EF
3R	14486920	3R_14486920_SNP [dm3] 3R_18661198_SNP [dm6]	C	T	2.376e^-9	8.652e^-6	SYNONYMOUS_CODING Cpsf73 DOWNSTREAM CstF-64	TF binding site mE1_TFBS_cad
2R	16952573	2R_16952573_SNP [dm3] 2R_21065068_SNP [dm6]	A	G	2.383e^-9	8.658e^-6	UPSTREAM Cht12 DOWNSTREAM Cht4 INTERGENIC
3L	19991045	3L_19991045_SNP [dm3] 3L_19997945_SNP [dm6]	T	C	2.421e^-9	8.767e^-6	UTR_3_PRIME CG7433 DOWNSTREAM CG7433 & 1 other
3R	3763874	3R_3763874_SNP [dm3] 3R_7938152_SNP [dm6]	G	A	2.422e^-9	8.767e^-6	INTRON dsx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18116781	3R_18116781_DEL [dm3] 3R_22291059_DEL [dm6]	ACGACGTCGA	A	2.434e^-9	8.767e^-6	INTRON SKIP
3L	14074673	3L_14074673_SNP [dm3] 3L_14081573_SNP [dm6]	T	G	2.440e^-9	8.767e^-6	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	20266267	2L_20266267_INS [dm3] 2L_20266267_INS [dm6]	T	TCA	2.452e^-9	8.767e^-6	INTERGENIC
2R	2944841	2R_2944841_SNP [dm3] 2R_7057336_SNP [dm6]	G	A	2.458e^-9	8.767e^-6	SYNONYMOUS_CODING Tsp42Ep DOWNSTREAM Tsp42Eo & 1 other	TF binding site mE1_TFBS_chinmo
2R	2944931	2R_2944931_SNP [dm3] 2R_7057426_SNP [dm6]	C	A	2.458e^-9	8.767e^-6	DOWNSTREAM Tsp42Eo & 1 other INTRON Tsp42Ep	TF binding site mE1_TFBS_chinmo
2R	2953739	2R_2953739_SNP [dm3] 2R_7066234_SNP [dm6]	C	T	2.458e^-9	8.767e^-6	DOWNSTREAM Tsp42Er INTERGENIC
2R	2953768	2R_2953768_SNP [dm3] 2R_7066263_SNP [dm6]	G	A	2.458e^-9	8.767e^-6	DOWNSTREAM Tsp42Er INTERGENIC
2L	20602810	2L_20602810_SNP [dm3] 2L_20602810_SNP [dm6]	A	C	2.460e^-9	8.767e^-6	DOWNSTREAM CG31677 INTRON CR44909
X	4870450	X_4870450_INS [dm3] X_4976417_INS [dm6]	G	GACGTGAATGTATCAG...	2.534e^-9	9.015e^-6	INTRON CR44833
3L	15367504	3L_15367504_SNP [dm3] 3L_15374404_SNP [dm6]	A	T	2.589e^-9	9.174e^-6	INTERGENIC
3L	15367623	3L_15367623_SNP [dm3] 3L_15374523_SNP [dm6]	G	A	2.589e^-9	9.174e^-6	INTERGENIC
2L	5309267	2L_5309267_SNP [dm3] 2L_5309267_SNP [dm6]	T	A	2.725e^-9	9.638e^-6	SYNONYMOUS_CODING vri	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18685982	3R_18685982_SNP [dm3] 3R_22860260_SNP [dm6]	A	G	2.748e^-9	9.703e^-6	INTERGENIC
2R	17192628	2R_17192628_SNP [dm3] 2R_21305123_SNP [dm6]	C	T	2.840e^-9	1.001e^-5	SYNONYMOUS_CODING CG42672	TF binding site mE1_TFBS_cad
2L	2518477	2L_2518477_SNP [dm3] 2L_2518477_SNP [dm6]	T	G	2.883e^-9	1.014e^-5	UPSTREAM CG3528 INTERGENIC
3L	2129260	3L_2129260_SNP [dm3] 3L_2129260_SNP [dm6]	G	A	3.045e^-9	1.069e^-5	INTRON zormin
3R	22581124	3R_22581124_INS [dm3] 3R_26755402_INS [dm6]	A	AAAGCA	3.060e^-9	1.070e^-5	INTERGENIC
3R	22581127	3R_22581127_SNP [dm3] 3R_26755405_SNP [dm6]	T	C	3.060e^-9	1.070e^-5	INTERGENIC
2R	14962665	2R_14962665_SNP [dm3] 2R_19075160_SNP [dm6]	C	A	3.122e^-9	1.088e^-5	INTRON 5-HT1A
2R	3007692	2R_3007692_SNP [dm3] 2R_7120187_SNP [dm6]	A	C	3.123e^-9	1.088e^-5	INTRON esn
3R	12387604	3R_12387604_INS [dm3] 3R_16561882_INS [dm6]	A	CCGATGGGT	3.231e^-9	1.122e^-5	INTRON CG42342
3R	19449454	3R_19449454_SNP [dm3] 3R_23623732_SNP [dm6]	T	C	3.232e^-9	1.122e^-5	INTRON CG31145
3R	24278054	3R_24278054_SNP [dm3] 3R_28452332_SNP [dm6]	G	A	3.255e^-9	1.128e^-5	INTRON beat-VI	TF binding site mE1_TFBS_chinmo
3L	9296006	3L_9296006_SNP [dm3] 3L_9302906_SNP [dm6]	T	C	3.312e^-9	1.143e^-5	INTERGENIC
3L	9296008	3L_9296008_SNP [dm3] 3L_9302908_SNP [dm6]	T	A	3.312e^-9	1.143e^-5	INTERGENIC
2L	8746489	2L_8746489_SNP [dm3] 2L_8746489_SNP [dm6]	G	T	3.343e^-9	1.152e^-5	INTERGENIC
3L	5478237	3L_5478237_DEL [dm3] 3L_5485137_DEL [dm6]	GG	G	3.403e^-9	1.170e^-5	INTERGENIC
2L	9934895	2L_9934895_SNP [dm3] 2L_9934895_SNP [dm6]	T	C	3.423e^-9	1.174e^-5	UTR_3_PRIME CG31712
2R	13618071	2R_13618071_SNP [dm3] 2R_17730566_SNP [dm6]	G	T	3.427e^-9	1.174e^-5	INTRON CG4984 & 1 other
2L	9934888	2L_9934888_SNP [dm3] 2L_9934888_SNP [dm6]	T	C	3.460e^-9	1.183e^-5	UTR_3_PRIME CG31712
3L	8532248	3L_8532248_INS [dm3] 3L_8539148_INS [dm6]	A	AA	3.611e^-9	1.233e^-5	INTERGENIC
2R	9126985	2R_9126985_SNP [dm3] 2R_13239480_SNP [dm6]	G	C	3.697e^-9	1.260e^-5	UPSTREAM GstE14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	6073703	2R_6073703_SNP [dm3] 2R_10186198_SNP [dm6]	A	T	3.720e^-9	1.265e^-5	INTRON KCNQ
3L	12600804	3L_12600804_SNP [dm3] 3L_12607704_SNP [dm6]	A	T	3.891e^-9	1.321e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9225132	2L_9225132_SNP [dm3] 2L_9225132_SNP [dm6]	C	T	3.902e^-9	1.322e^-5	INTRON tai	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	22523979	2L_22523979_SNP [dm3] 2L_22631247_SNP [dm6]	A	T	3.998e^-9	1.352e^-5	INTRON CG40006	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	21155619	3R_21155619_SNP [dm3] 3R_25329897_SNP [dm6]	G	T	4.286e^-9	1.447e^-5	UPSTREAM CHKov1 INTRON CHKov2	TF binding site mE1_TFBS_Trl
2R	3081015	2R_3081015_SNP [dm3] 2R_7193510_SNP [dm6]	A	T	4.328e^-9	1.459e^-5	NON_SYNONYMOUS_CODING pk INTRON pk	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16955273	2R_16955273_SNP [dm3] 2R_21067768_SNP [dm6]	C	T	4.678e^-9	1.574e^-5	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
3R	24973094	3R_24973094_SNP [dm3] 3R_29147372_SNP [dm6]	C	T	4.797e^-9	1.605e^-5	NON_SYNONYMOUS_CODING CG11882 UPSTREAM CG14511 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_Ubx
3R	25156825	3R_25156825_SNP [dm3] 3R_29331103_SNP [dm6]	T	G	4.797e^-9	1.605e^-5	INTERGENIC
3R	25165482	3R_25165482_SNP [dm3] 3R_29339760_SNP [dm6]	C	A	4.797e^-9	1.605e^-5	INTERGENIC
2R	7526582	2R_7526582_SNP [dm3] 2R_11639077_SNP [dm6]	C	T	4.904e^-9	1.638e^-5	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13869055	3R_13869055_SNP [dm3] 3R_18043333_SNP [dm6]	C	A	5.058e^-9	1.687e^-5	INTERGENIC
3R	23643170	3R_23643170_SNP [dm3] 3R_27817448_SNP [dm6]	C	T	5.419e^-9	1.804e^-5	INTRON CG34353	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11468550	3L_11468550_SNP [dm3] 3L_11475450_SNP [dm6]	C	A	5.521e^-9	1.834e^-5	SYNONYMOUS_CODING Vha16-2
X	15382826	X_15382826_SNP [dm3] X_15488793_SNP [dm6]	C	T	5.675e^-9	1.882e^-5	INTRON Gmap
X	20364902	X_20364902_INS [dm3] X_20493875_INS [dm6]	T	TTAGGTCAATT...	5.918e^-9	1.959e^-5	INTRON RhoGAP19D
3R	19449620	3R_19449620_SNP [dm3] 3R_23623898_SNP [dm6]	T	C	6.147e^-9	2.031e^-5	INTRON CG31145	TF binding site BDTNP1_TFBS_sna
2R	11792919	2R_11792919_INS [dm3] 2R_15905414_INS [dm6]	T	TGTTGTT	6.219e^-9	2.051e^-5	INTRON sli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20365168	X_20365168_SNP [dm3] X_20494141_SNP [dm6]	T	C	6.281e^-9	2.068e^-5	INTRON RhoGAP19D
X	15383016	X_15383016_INS [dm3] X_15488983_INS [dm6]	G	ACATA	6.420e^-9	2.107e^-5	UPSTREAM Gmap INTRON Gmap
X	15383018	X_15383018_SNP [dm3] X_15488985_SNP [dm6]	T	A	6.420e^-9	2.107e^-5	UPSTREAM Gmap INTRON Gmap
3L	5145753	3L_5145753_SNP [dm3] 3L_5152653_SNP [dm6]	G	A	6.507e^-9	2.131e^-5	UPSTREAM Srp54k & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4385299	3L_4385299_SNP [dm3] 3L_4385299_SNP [dm6]	G	T	6.779e^-9	2.216e^-5	INTRON slow
X	21923635	X_21923635_SNP [dm3] X_22521799_SNP [dm6]	A	C	6.810e^-9	2.223e^-5	INTRON CG17600	TF binding site BDTNP1_TFBS_dl
3L	8215755	3L_8215755_SNP [dm3] 3L_8222655_SNP [dm6]	C	T	7.126e^-9	2.322e^-5	SYNONYMOUS_CODING CG13678	TF binding site mE1_TFBS_cad
2R	17459192	2R_17459192_SNP [dm3] 2R_21571687_SNP [dm6]	C	T	8.069e^-9	2.624e^-5	UTR_5_PRIME CG10440 UPSTREAM CG10440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16377608	2R_16377608_SNP [dm3] 2R_20490103_SNP [dm6]	T	G	8.251e^-9	2.679e^-5	DOWNSTREAM CR44643 INTERGENIC
3R	21368749	3R_21368749_SNP [dm3] 3R_25543027_SNP [dm6]	T	G	8.465e^-9	2.739e^-5	INTRON msi
3R	21368753	3R_21368753_SNP [dm3] 3R_25543031_SNP [dm6]	G	T	8.465e^-9	2.739e^-5	INTRON msi
2R	16955244	2R_16955244_SNP [dm3] 2R_21067739_SNP [dm6]	A	T	8.484e^-9	2.740e^-5	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
2L	12148565	2L_12148565_SNP [dm3] 2L_12148565_SNP [dm6]	C	T	8.531e^-9	2.750e^-5	INTRON CG31760
3R	21301577	3R_21301577_SNP [dm3] 3R_25475855_SNP [dm6]	T	A	8.544e^-9	2.750e^-5	SYNONYMOUS_CODING CG4553 DOWNSTREAM Vps33B
2R	2728758	2R_2728758_SNP [dm3] 2R_6841253_SNP [dm6]	G	T	8.677e^-9	2.788e^-5	UPSTREAM CR44166 INTERGENIC
2L	2181268	2L_2181268_SNP [dm3] 2L_2181268_SNP [dm6]	A	T	8.744e^-9	2.805e^-5	UPSTREAM CR43751 INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1237157	2L_1237157_SNP [dm3] 2L_1237157_SNP [dm6]	G	C	8.867e^-9	2.840e^-5	INTERGENIC
2R	15429857	2R_15429857_SNP [dm3] 2R_19542352_SNP [dm6]	G	A	8.990e^-9	2.874e^-5	INTRON sm
2R	5290904	2R_5290904_SNP [dm3] 2R_9403399_SNP [dm6]	C	A	9.120e^-9	2.910e^-5	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
X	20707688	X_20707688_SNP [dm3] X_20836661_SNP [dm6]	A	G	9.308e^-9	2.965e^-5	INTRON shakB
X	14852821	X_14852821_SNP [dm3] X_14958788_SNP [dm6]	T	G	9.484e^-9	3.016e^-5	INTRON eag	TF binding site mE1_TFBS_bab1
2R	12038180	2R_12038180_SNP [dm3] 2R_16150675_SNP [dm6]	T	A	9.533e^-9	3.027e^-5	UTR_5_PRIME lbk UPSTREAM CG10731	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	15655075	X_15655075_SNP [dm3] X_15761042_SNP [dm6]	C	T	9.678e^-9	3.065e^-5	UPSTREAM mRpL3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2R	7960893	2R_7960893_SNP [dm3] 2R_12073388_SNP [dm6]	G	A	9.686e^-9	3.065e^-5	INTRON CG8888
3L	3810552	3L_3810552_SNP [dm3] 3L_3810552_SNP [dm6]	C	G	9.737e^-9	3.070e^-5	NON_SYNONYMOUS_CODING CG32263 UPSTREAM CG32262 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	3810560	3L_3810560_SNP [dm3] 3L_3810560_SNP [dm6]	G	C	9.737e^-9	3.070e^-5	SYNONYMOUS_CODING CG32263 UPSTREAM CG32262 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	14853283	X_14853283_SNP [dm3] X_14959250_SNP [dm6]	G	A	9.886e^-9	3.112e^-5	INTRON eag	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7813472	2L_7813472_SNP [dm3] 2L_7813472_SNP [dm6]	G	A	9.999e^-9	3.142e^-5	UPSTREAM LanB1 INTRON LanB1	TF binding site BDTNP1_TFBS_twi
X	3777055	X_3777055_SNP [dm3] X_3883022_SNP [dm6]	A	G	1.045e^-8	3.267e^-5	DOWNSTREAM VhaAC39-1 INTERGENIC
X	3777742	X_3777742_SNP [dm3] X_3883709_SNP [dm6]	T	G	1.045e^-8	3.267e^-5	UPSTREAM CG15239 DOWNSTREAM VhaAC39-1 INTERGENIC
X	3778043	X_3778043_SNP [dm3] X_3884010_SNP [dm6]	G	A	1.045e^-8	3.267e^-5	UPSTREAM CG15239 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14853584	X_14853584_SNP [dm3] X_14959551_SNP [dm6]	T	C	1.057e^-8	3.300e^-5	INTRON eag	TF binding site mE1_TFBS_bab1
2R	2380603	2R_2380603_SNP [dm3] 2R_6493098_SNP [dm6]	T	C	1.069e^-8	3.327e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4719140	3L_4719140_SNP [dm3] 3L_4719140_SNP [dm6]	A	T	1.069e^-8	3.327e^-5	INTRON RhoGEF64C
X	502761	X_502761_INS [dm3] X_608728_INS [dm6]	G	GG	1.080e^-8	3.355e^-5	INTRON CG13366
X	14853247	X_14853247_SNP [dm3] X_14959214_SNP [dm6]	G	T	1.095e^-8	3.384e^-5	INTRON eag	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	14854124	X_14854124_SNP [dm3] X_14960091_SNP [dm6]	G	A	1.095e^-8	3.384e^-5	INTRON eag	TF binding site mE1_TFBS_bab1
X	14857288	X_14857288_DEL [dm3] X_14963255_DEL [dm6]	AA	A	1.095e^-8	3.384e^-5	INTRON eag
2R	14420035	2R_14420035_SNP [dm3] 2R_18532530_SNP [dm6]	C	G	1.100e^-8	3.394e^-5	INTRON CG10924	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6436569	3R_6436569_DEL [dm3] 3R_10610847_DEL [dm6]	ACA	A	1.107e^-8	3.411e^-5	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	15382929	X_15382929_SNP [dm3] X_15488896_SNP [dm6]	T	C	1.178e^-8	3.615e^-5	UPSTREAM Gmap INTRON Gmap
X	15382932	X_15382932_SNP [dm3] X_15488899_SNP [dm6]	A	C	1.178e^-8	3.615e^-5	UPSTREAM Gmap INTRON Gmap
X	2534284	X_2534284_SNP [dm3] X_2640251_SNP [dm6]	A	T	1.201e^-8	3.680e^-5	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	15294069	2R_15294069_SNP [dm3] 2R_19406564_SNP [dm6]	A	T	1.203e^-8	3.680e^-5	DOWNSTREAM hts INTRON hts
X	8511127	X_8511127_DEL [dm3] X_8617094_DEL [dm6]	TT	T	1.215e^-8	3.711e^-5	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	562616	3L_562616_SNP [dm3] 3L_562616_SNP [dm6]	A	T	1.228e^-8	3.747e^-5	INTRON hipk
3L	6595665	3L_6595665_SNP [dm3] 3L_6602565_SNP [dm6]	T	C	1.244e^-8	3.789e^-5	NON_SYNONYMOUS_CODING ndl
3R	22163435	3R_22163435_INS [dm3] 3R_26337713_INS [dm6]	G	GTTAG	1.257e^-8	3.821e^-5	INTRON CG33970
2L	10078242	2L_10078242_SNP [dm3] 2L_10078242_SNP [dm6]	A	G	1.264e^-8	3.835e^-5	INTRON CG44153
2L	10777774	2L_10777774_SNP [dm3] 2L_10777774_SNP [dm6]	G	A	1.273e^-8	3.857e^-5	INTRON CG31869
X	3777993	X_3777993_SNP [dm3] X_3883960_SNP [dm6]	G	A	1.298e^-8	3.926e^-5	UPSTREAM CG15239 DOWNSTREAM VhaAC39-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2420551	2R_2420551_SNP [dm3] 2R_6533046_SNP [dm6]	G	C	1.329e^-8	4.015e^-5	INTRON jing EXON CR43905	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1453609	2L_1453609_SNP [dm3] 2L_1453609_SNP [dm6]	T	A	1.375e^-8	4.138e^-5	INTERGENIC
2L	1453613	2L_1453613_SNP [dm3] 2L_1453613_SNP [dm6]	C	T	1.375e^-8	4.138e^-5	INTERGENIC
3L	8534454	3L_8534454_SNP [dm3] 3L_8541354_SNP [dm6]	C	G	1.386e^-8	4.167e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	7202945	2L_7202945_SNP [dm3] 2L_7202945_SNP [dm6]	T	C	1.401e^-8	4.199e^-5	INTRON CG4502
2L	8664733	2L_8664733_SNP [dm3] 2L_8664733_SNP [dm6]	C	A	1.402e^-8	4.199e^-5	INTRON Sema-1a
3R	3863628	3R_3863628_SNP [dm3] 3R_8037906_SNP [dm6]	C	G	1.405e^-8	4.204e^-5	UPSTREAM CR44936 INTERGENIC
X	14852193	X_14852193_SNP [dm3] X_14958160_SNP [dm6]	T	G	1.419e^-8	4.232e^-5	INTRON eag
X	14854493	X_14854493_DEL [dm3] X_14960460_DEL [dm6]	TTAATGATTGATACTGTATG...	T	1.419e^-8	4.232e^-5	INTRON eag	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	12793618	X_12793618_SNP [dm3] X_12899585_SNP [dm6]	C	G	1.437e^-8	4.272e^-5	SYNONYMOUS_CODING CG32649 UPSTREAM CG32650	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9104890	2R_9104890_SNP [dm3] 2R_13217385_SNP [dm6]	C	T	1.438e^-8	4.272e^-5	SYNONYMOUS_CODING CG4630	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3702239	3L_3702239_SNP [dm3] 3L_3702239_SNP [dm6]	G	A	1.443e^-8	4.282e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3393060	3L_3393060_SNP [dm3] 3L_3393060_SNP [dm6]	G	T	1.452e^-8	4.301e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20364947	X_20364947_SNP [dm3] X_20493920_SNP [dm6]	G	T	1.472e^-8	4.355e^-5	INTRON RhoGAP19D
2R	16955227	2R_16955227_SNP [dm3] 2R_21067722_SNP [dm6]	C	A	1.495e^-8	4.415e^-5	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
3L	9217639	3L_9217639_SNP [dm3] 3L_9224539_SNP [dm6]	T	G	1.507e^-8	4.444e^-5	INTERGENIC
3R	3787739	3R_3787739_SNP [dm3] 3R_7962017_SNP [dm6]	C	A	1.519e^-8	4.473e^-5	INTRON dsx
3R	21125965	3R_21125965_SNP [dm3] 3R_25300243_SNP [dm6]	C	G	1.550e^-8	4.555e^-5	UPSTREAM CG31288 & 1 other INTERGENIC
3R	24151141	3R_24151141_SNP [dm3] 3R_28325419_SNP [dm6]	C	T	1.589e^-8	4.663e^-5	INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	3777758	X_3777758_SNP [dm3] X_3883725_SNP [dm6]	C	A	1.617e^-8	4.737e^-5	UPSTREAM CG15239 DOWNSTREAM VhaAC39-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20611995	2L_20611995_DEL [dm3] 2L_20611995_DEL [dm6]	ATATATATATA...	A	1.650e^-8	4.826e^-5	INTRON CR44909
3L	9827258	3L_9827258_SNP [dm3] 3L_9834158_SNP [dm6]	A	G	1.733e^-8	5.061e^-5	UTR_3_PRIME CG43897 DOWNSTREAM I-2
3R	25148596	3R_25148596_SNP [dm3] 3R_29322874_SNP [dm6]	T	G	1.826e^-8	5.290e^-5	INTERGENIC
3R	25148601	3R_25148601_SNP [dm3] 3R_29322879_SNP [dm6]	T	A	1.826e^-8	5.290e^-5	INTERGENIC
3R	25160490	3R_25160490_SNP [dm3] 3R_29334768_SNP [dm6]	G	A	1.826e^-8	5.290e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25169131	3R_25169131_SNP [dm3] 3R_29343409_SNP [dm6]	T	C	1.826e^-8	5.290e^-5	INTERGENIC
3R	25174326	3R_25174326_SNP [dm3] 3R_29348604_SNP [dm6]	T	C	1.826e^-8	5.290e^-5	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14852169	X_14852169_SNP [dm3] X_14958136_SNP [dm6]	C	T	1.856e^-8	5.369e^-5	INTRON eag
2L	22885854	2L_22885854_DEL [dm3] 2L_22993122_DEL [dm6]	AAA	A	1.865e^-8	5.387e^-5	DOWNSTREAM cta INTERGENIC
X	2579853	X_2579853_SNP [dm3] X_2685820_SNP [dm6]	G	A	1.893e^-8	5.460e^-5	UTR_5_PRIME per
2R	4655964	2R_4655964_SNP [dm3] 2R_8768459_SNP [dm6]	G	A	1.929e^-8	5.555e^-5	EXON CR44278
2L	12263056	2L_12263056_SNP [dm3] 2L_12263056_SNP [dm6]	A	G	1.954e^-8	5.619e^-5	INTRON aret
X	4864713	X_4864713_SNP [dm3] X_4970680_SNP [dm6]	A	G	1.978e^-8	5.679e^-5	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	9121047	2R_9121047_SNP [dm3] 2R_13233542_SNP [dm6]	C	T	1.982e^-8	5.683e^-5	SYNONYMOUS_CODING CG4670	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7692505	3R_7692505_SNP [dm3] 3R_11866783_SNP [dm6]	C	T	1.994e^-8	5.706e^-5	INTRON CG6959
2R	13085810	2R_13085810_SNP [dm3] 2R_17198305_SNP [dm6]	G	A	2.020e^-8	5.772e^-5	INTERGENIC
2R	10638662	2R_10638662_SNP [dm3] 2R_14751157_SNP [dm6]	G	A	2.085e^-8	5.950e^-5	SYNONYMOUS_CODING Rpn6 DOWNSTREAM AttB
2R	17446260	2R_17446260_SNP [dm3] 2R_21558755_SNP [dm6]	G	T	2.114e^-8	6.022e^-5	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21125762	3R_21125762_SNP [dm3] 3R_25300040_SNP [dm6]	C	G	2.167e^-8	6.164e^-5	UPSTREAM CG31288 & 1 other INTERGENIC
2L	10118490	2L_10118490_SNP [dm3] 2L_10118490_SNP [dm6]	C	T	2.174e^-8	6.175e^-5	INTRON CG44153 & 1 other	transposable element FlyBase
2L	2340609	2L_2340609_SNP [dm3] 2L_2340609_SNP [dm6]	G	A	2.206e^-8	6.256e^-5	NON_SYNONYMOUS_CODING eys INTRON CG9967	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1467722	2L_1467722_SNP [dm3] 2L_1467722_SNP [dm6]	C	G	2.299e^-8	6.509e^-5	INTERGENIC
X	14852183	X_14852183_SNP [dm3] X_14958150_SNP [dm6]	C	A	2.405e^-8	6.801e^-5	INTRON eag
3L	8534451	3L_8534451_SNP [dm3] 3L_8541351_SNP [dm6]	T	G	2.470e^-8	6.974e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	4977060	3L_4977060_SNP [dm3] 3L_4977060_SNP [dm6]	A	G	2.478e^-8	6.984e^-5	UPSTREAM Con INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	9116339	3L_9116339_SNP [dm3] 3L_9123239_SNP [dm6]	T	C	2.509e^-8	7.062e^-5	INTRON bol	TF binding site mE1_TFBS_Ubx
X	14852151	X_14852151_SNP [dm3] X_14958118_SNP [dm6]	T	A	2.527e^-8	7.092e^-5	INTRON eag
X	14852158	X_14852158_SNP [dm3] X_14958125_SNP [dm6]	C	A	2.527e^-8	7.092e^-5	INTRON eag
2R	10630805	2R_10630805_SNP [dm3] 2R_14743300_SNP [dm6]	G	A	2.541e^-8	7.119e^-5	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10642923	2R_10642923_SNP [dm3] 2R_14755418_SNP [dm6]	T	G	2.558e^-8	7.157e^-5	NON_SYNONYMOUS_CODING CG10151	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_Trl
X	8060648	X_8060648_SNP [dm3] X_8166615_SNP [dm6]	T	C	2.576e^-8	7.197e^-5	UTR_3_PRIME CG2278 UPSTREAM Or7a DOWNSTREAM CG2278
2L	5187913	2L_5187913_SNP [dm3] 2L_5187913_SNP [dm6]	T	C	2.667e^-8	7.438e^-5	INTRON Msp300 EXON snoRNA:Psi28S-2263
2R	2457777	2R_2457777_SNP [dm3] 2R_6570272_SNP [dm6]	G	T	2.840e^-8	7.910e^-5	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	14854472	X_14854472_DEL [dm3] X_14960439_DEL [dm6]	TAGGAGTCTAT...	T	2.854e^-8	7.936e^-5	INTRON eag	TF binding site mE1_TFBS_bab1
2R	7568776	2R_7568776_SNP [dm3] 2R_11681271_SNP [dm6]	T	A	2.904e^-8	8.064e^-5	INTRON Buffy
3L	24109846	3L_24109846_DEL [dm3] 3L_24116746_DEL [dm6]	TACC	T	3.153e^-8	8.743e^-5	INTRON Snap25
2L	12245503	2L_12245503_SNP [dm3] 2L_12245503_SNP [dm6]	G	C	3.171e^-8	8.766e^-5	INTRON aret
3R	25148594	3R_25148594_SNP [dm3] 3R_29322872_SNP [dm6]	G	T	3.171e^-8	8.766e^-5	INTERGENIC
X	8450139	X_8450139_SNP [dm3] X_8556106_SNP [dm6]	C	T	3.209e^-8	8.848e^-5	NON_SYNONYMOUS_CODING IntS4 DOWNSTREAM Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3450351	2L_3450351_SNP [dm3] 2L_3450351_SNP [dm6]	C	T	3.210e^-8	8.848e^-5	SPLICE_SITE_REGION Snx1 INTRON Snx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	516220	2L_516220_SNP [dm3] 2L_516220_SNP [dm6]	C	T	3.260e^-8	8.972e^-5	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	14854489	X_14854489_SNP [dm3] X_14960456_SNP [dm6]	G	C	3.276e^-8	8.991e^-5	INTRON eag	TF binding site mE1_TFBS_bab1
X	14854490	X_14854490_SNP [dm3] X_14960457_SNP [dm6]	G	A	3.276e^-8	8.991e^-5	INTRON eag	TF binding site mE1_TFBS_bab1
3R	19395594	3R_19395594_SNP [dm3] 3R_23569872_SNP [dm6]	G	A	3.316e^-8	9.085e^-5	INTRON beat-IV
2L	1445285	2L_1445285_SNP [dm3] 2L_1445285_SNP [dm6]	T	A	3.490e^-8	9.547e^-5	INTERGENIC
2L	5187106	2L_5187106_SNP [dm3] 2L_5187106_SNP [dm6]	C	T	3.513e^-8	9.598e^-5	UPSTREAM snoRNA:Psi28S-2263 DOWNSTREAM Msp300 INTRON Msp300
2L	14012487	2L_14012487_SNP [dm3] 2L_14012487_SNP [dm6]	G	A	3.536e^-8	9.647e^-5	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18138528	2L_18138528_SNP [dm3] 2L_18138528_SNP [dm6]	A	T	3.804e^-8	1.031e^-4	UPSTREAM kel DOWNSTREAM Socs36E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	25148659	3R_25148659_SNP [dm3] 3R_29322937_SNP [dm6]	T	C	3.835e^-8	1.031e^-4	INTERGENIC
3R	25149489	3R_25149489_SNP [dm3] 3R_29323767_SNP [dm6]	A	G	3.835e^-8	1.031e^-4	INTERGENIC
3R	25157363	3R_25157363_SNP [dm3] 3R_29331641_SNP [dm6]	C	T	3.835e^-8	1.031e^-4	INTERGENIC
3R	25157763	3R_25157763_SNP [dm3] 3R_29332041_SNP [dm6]	A	G	3.835e^-8	1.031e^-4	INTERGENIC
3R	25158802	3R_25158802_SNP [dm3] 3R_29333080_SNP [dm6]	T	C	3.835e^-8	1.031e^-4	INTERGENIC
3R	25168534	3R_25168534_SNP [dm3] 3R_29342812_SNP [dm6]	C	G	3.835e^-8	1.031e^-4	INTERGENIC	TF binding site mE1_TFBS_cad
3R	25171318	3R_25171318_SNP [dm3] 3R_29345596_SNP [dm6]	G	A	3.835e^-8	1.031e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25172611	3R_25172611_SNP [dm3] 3R_29346889_SNP [dm6]	G	A	3.835e^-8	1.031e^-4	INTERGENIC
3R	25177178	3R_25177178_SNP [dm3] 3R_29351456_SNP [dm6]	G	T	3.835e^-8	1.031e^-4	INTERGENIC
X	14854484	X_14854484_SNP [dm3] X_14960451_SNP [dm6]	A	C	3.897e^-8	1.046e^-4	INTRON eag	TF binding site mE1_TFBS_bab1
X	7329297	X_7329297_SNP [dm3] X_7435264_SNP [dm6]	A	G	3.914e^-8	1.049e^-4	INTERGENIC
3R	25173503	3R_25173503_SNP [dm3] 3R_29347781_SNP [dm6]	G	C	4.274e^-8	1.144e^-4	INTERGENIC
X	6542788	X_6542788_SNP [dm3] X_6648755_SNP [dm6]	A	G	4.313e^-8	1.153e^-4	NON_SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_chinmo
3L	7950237	3L_7950237_SNP [dm3] 3L_7957137_SNP [dm6]	T	C	4.325e^-8	1.154e^-4	INTERGENIC
2R	10641979	2R_10641979_SNP [dm3] 2R_14754474_SNP [dm6]	T	A	4.358e^-8	1.161e^-4	SYNONYMOUS_CODING CG10151	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13672916	X_13672916_SNP [dm3] X_13778883_SNP [dm6]	C	A	4.404e^-8	1.172e^-4	UTR_3_PRIME rdgB DOWNSTREAM CtsB1
2R	16955201	2R_16955201_DEL [dm3] 2R_21067696_DEL [dm6]	TGAAATACAT	T	4.486e^-8	1.190e^-4	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
3R	25162545	3R_25162545_SNP [dm3] 3R_29336823_SNP [dm6]	A	C	4.487e^-8	1.190e^-4	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3541846	2L_3541846_INS [dm3] 2L_3541846_INS [dm6]	T	TT	4.490e^-8	1.190e^-4	INTRON drm	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13192736	2L_13192736_SNP [dm3] 2L_13192736_SNP [dm6]	C	A	4.664e^-8	1.234e^-4	UTR_5_PRIME Edem2 UPSTREAM CG16974	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	5569531	3L_5569531_SNP [dm3] 3L_5576431_SNP [dm6]	C	A	4.711e^-8	1.245e^-4	INTRON Msr-110
2L	4129905	2L_4129905_SNP [dm3] 2L_4129905_SNP [dm6]	T	A	4.741e^-8	1.251e^-4	INTERGENIC
2L	2505709	2L_2505709_SNP [dm3] 2L_2505709_SNP [dm6]	G	T	4.761e^-8	1.255e^-4	INTERGENIC
2L	22558421	2L_22558421_SNP [dm3] 2L_22665689_SNP [dm6]	A	C	4.872e^-8	1.282e^-4	INTRON CG40006
2L	2340446	2L_2340446_SNP [dm3] 2L_2340446_SNP [dm6]	A	G	4.928e^-8	1.295e^-4	SYNONYMOUS_CODING eys INTRON CG9967	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10359681	X_10359681_SNP [dm3] X_10465648_SNP [dm6]	G	C	4.979e^-8	1.306e^-4	SYNONYMOUS_CODING nocte	TF binding site mE1_TFBS_chinmo
3L	4269802	3L_4269802_INS [dm3] 3L_4269802_INS [dm6]	A	ACCC	5.252e^-8	1.376e^-4	INTRON CG1273	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	19902531	2R_19902531_SNP [dm3] 2R_24015008_SNP [dm6]	C	T	5.442e^-8	1.424e^-4	NON_SYNONYMOUS_CODING CG4324 UPSTREAM Unc-89	TF binding site mE1_TFBS_chinmo
3L	4977035	3L_4977035_SNP [dm3] 3L_4977035_SNP [dm6]	C	T	5.600e^-8	1.463e^-4	UPSTREAM Con INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	25341445	3R_25341445_SNP [dm3] 3R_29515723_SNP [dm6]	T	A	5.665e^-8	1.478e^-4	UTR_5_PRIME CG2014 UPSTREAM CG2014	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3865080	3L_3865080_SNP [dm3] 3L_3865080_SNP [dm6]	C	T	5.705e^-8	1.486e^-4	UPSTREAM CR45379 INTERGENIC
3R	25161768	3R_25161768_SNP [dm3] 3R_29336046_SNP [dm6]	G	T	5.723e^-8	1.489e^-4	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	18953922	2L_18953922_SNP [dm3] 2L_18953922_SNP [dm6]	A	C	5.980e^-8	1.554e^-4	UPSTREAM CR44741 INTRON CG10621
2R	19069063	2R_19069063_SNP [dm3] 2R_23181540_SNP [dm6]	C	A	5.988e^-8	1.554e^-4	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7490828	X_7490828_SNP [dm3] X_7596795_SNP [dm6]	G	T	5.997e^-8	1.554e^-4	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	8844984	2R_8844984_SNP [dm3] 2R_12957479_SNP [dm6]	C	A	6.078e^-8	1.573e^-4	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	8206522	3L_8206522_SNP [dm3] 3L_8213422_SNP [dm6]	G	A	6.113e^-8	1.580e^-4	SYNONYMOUS_CODING CG8006	TF binding site mE1_TFBS_cad
3L	5126955	3L_5126955_SNP [dm3] 3L_5133855_SNP [dm6]	G	T	6.146e^-8	1.586e^-4	UPSTREAM CG4603 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	13187273	3L_13187273_SNP [dm3] 3L_13194173_SNP [dm6]	G	A	6.523e^-8	1.679e^-4	INTERGENIC
3L	24109851	3L_24109851_DEL [dm3] 3L_24116751_DEL [dm6]	CCCA	C	6.533e^-8	1.679e^-4	INTRON Snap25
3L	24109857	3L_24109857_DEL [dm3] 3L_24116757_DEL [dm6]	AGCGC	A	6.533e^-8	1.679e^-4	INTRON Snap25
2R	5573833	2R_5573833_SNP [dm3] 2R_9686328_SNP [dm6]	A	G	6.594e^-8	1.692e^-4	INTERGENIC
3L	5478292	3L_5478292_SNP [dm3] 3L_5485192_SNP [dm6]	G	A	6.643e^-8	1.702e^-4	INTERGENIC
3L	4926952	3L_4926952_SNP [dm3] 3L_4926952_SNP [dm6]	T	C	6.679e^-8	1.707e^-4	INTERGENIC
3R	26172922	3R_26172922_SNP [dm3] 3R_30347200_SNP [dm6]	G	A	6.679e^-8	1.707e^-4	INTRON hdc
2R	9126474	2R_9126474_SNP [dm3] 2R_13238969_SNP [dm6]	A	G	6.688e^-8	1.707e^-4	UPSTREAM GstE14 INTRON CG4679	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	8431228	3L_8431228_SNP [dm3] 3L_8438128_SNP [dm6]	T	A	6.759e^-8	1.721e^-4	INTRON Unr
3R	24238547	3R_24238547_SNP [dm3] 3R_28412825_SNP [dm6]	T	C	6.764e^-8	1.721e^-4	INTERGENIC
2R	8843035	2R_8843035_SNP [dm3] 2R_12955530_SNP [dm6]	A	T	6.782e^-8	1.723e^-4	UTR_3_PRIME CG13321 DOWNSTREAM CG13321	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	10401310	X_10401310_SNP [dm3] X_10507277_SNP [dm6]	G	T	6.790e^-8	1.723e^-4	INTRON spri
3L	5590140	3L_5590140_SNP [dm3] 3L_5597040_SNP [dm6]	C	A	6.984e^-8	1.770e^-4	SYNONYMOUS_CODING CG5150	TF binding site mE1_TFBS_cad
3R	3717904	3R_3717904_SNP [dm3] 3R_7892182_SNP [dm6]	G	T	7.076e^-8	1.791e^-4	INTRON mRpS9 & 1 other	TF binding site mE1_TFBS_cad
2L	3237384	2L_3237384_SNP [dm3] 2L_3237384_SNP [dm6]	C	T	7.286e^-8	1.842e^-4	INTERGENIC
2R	5607034	2R_5607034_SNP [dm3] 2R_9719529_SNP [dm6]	C	T	7.309e^-8	1.845e^-4	SYNONYMOUS_CODING sqa
2R	8985568	2R_8985568_SNP [dm3] 2R_13098063_SNP [dm6]	T	C	7.501e^-8	1.891e^-4	INTERGENIC
3L	4274808	3L_4274808_SNP [dm3] 3L_4274808_SNP [dm6]	C	T	7.700e^-8	1.936e^-4	SYNONYMOUS_CODING CG1273
2R	5358481	2R_5358481_SNP [dm3] 2R_9470976_SNP [dm6]	C	T	7.700e^-8	1.936e^-4	INTRON Camta
2L	16940596	2L_16940596_SNP [dm3] 2L_16940596_SNP [dm6]	C	T	7.749e^-8	1.946e^-4	INTERGENIC
X	12775146	X_12775146_SNP [dm3] X_12881113_SNP [dm6]	G	C	7.882e^-8	1.976e^-4	INTRON Pde9
3L	10749092	3L_10749092_SNP [dm3] 3L_10755992_SNP [dm6]	G	A	8.064e^-8	2.019e^-4	INTERGENIC
2L	5819963	2L_5819963_SNP [dm3] 2L_5819963_SNP [dm6]	G	T	8.115e^-8	2.029e^-4	INTERGENIC
3L	3702229	3L_3702229_SNP [dm3] 3L_3702229_SNP [dm6]	T	A	8.389e^-8	2.095e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9099270	2R_9099270_SNP [dm3] 2R_13211765_SNP [dm6]	T	G	8.503e^-8	2.121e^-4	UPSTREAM CG34312 & 1 other DOWNSTREAM AQP INTRON CG30058 & 2 others
3L	3695825	3L_3695825_SNP [dm3] 3L_3695825_SNP [dm6]	G	A	8.621e^-8	2.147e^-4	INTERGENIC
2L	2340723	2L_2340723_SNP [dm3] 2L_2340723_SNP [dm6]	C	T	8.761e^-8	2.179e^-4	NON_SYNONYMOUS_CODING eys INTRON CG9967	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3778665	3L_3778665_SNP [dm3] 3L_3778665_SNP [dm6]	C	T	8.909e^-8	2.187e^-4	INTRON CG32264
3L	3789466	3L_3789466_SNP [dm3] 3L_3789466_SNP [dm6]	A	T	8.909e^-8	2.187e^-4	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	3790366	3L_3790366_SNP [dm3] 3L_3790366_SNP [dm6]	G	C	8.909e^-8	2.187e^-4	UPSTREAM CG32266 INTRON CG32264	TF binding site mE1_TFBS_bab1
3L	3790930	3L_3790930_INS [dm3] 3L_3790930_INS [dm6]	A	AAAAA	8.909e^-8	2.187e^-4	INTRON CG32264 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3798719	3L_3798719_SNP [dm3] 3L_3798719_SNP [dm6]	G	T	8.909e^-8	2.187e^-4	INTRON CG32264
3L	3799444	3L_3799444_SNP [dm3] 3L_3799444_SNP [dm6]	A	T	8.909e^-8	2.187e^-4	INTRON CG32264
3L	3803940	3L_3803940_SNP [dm3] 3L_3803940_SNP [dm6]	C	T	8.909e^-8	2.187e^-4	UTR_3_PRIME ntc INTRON CG32264	TF binding site mE1_TFBS_cad
3L	3804010	3L_3804010_SNP [dm3] 3L_3804010_SNP [dm6]	A	G	8.909e^-8	2.187e^-4	SYNONYMOUS_CODING ntc INTRON CG32264	TF binding site mE1_TFBS_cad
3L	4351281	3L_4351281_SNP [dm3] 3L_4351281_SNP [dm6]	A	G	8.909e^-8	2.187e^-4	INTRON Cip4
3L	4639011	3L_4639011_SNP [dm3] 3L_4639011_SNP [dm6]	C	T	8.909e^-8	2.187e^-4	INTRON axo
3L	3701267	3L_3701267_SNP [dm3] 3L_3701267_SNP [dm6]	C	T	8.974e^-8	2.200e^-4	INTERGENIC
2R	5292391	2R_5292391_SNP [dm3] 2R_9404886_SNP [dm6]	A	G	9.145e^-8	2.239e^-4	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15551650	X_15551650_INS [dm3] X_15657617_INS [dm6]	T	TGT	9.299e^-8	2.268e^-4	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	18263391	3L_18263391_SNP [dm3] 3L_18270291_SNP [dm6]	G	A	9.327e^-8	2.268e^-4	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	18263532	3L_18263532_SNP [dm3] 3L_18270432_SNP [dm6]	A	T	9.327e^-8	2.268e^-4	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	14764786	2L_14764786_SNP [dm3] 2L_14764786_SNP [dm6]	T	A	9.349e^-8	2.268e^-4	DOWNSTREAM CSN1a INTERGENIC
2L	14764817	2L_14764817_SNP [dm3] 2L_14764817_SNP [dm6]	C	A	9.349e^-8	2.268e^-4	DOWNSTREAM CSN1a INTERGENIC
2L	14764843	2L_14764843_SNP [dm3] 2L_14764843_SNP [dm6]	C	A	9.349e^-8	2.268e^-4	DOWNSTREAM CSN1a INTERGENIC
2L	14764853	2L_14764853_SNP [dm3] 2L_14764853_SNP [dm6]	A	C	9.349e^-8	2.268e^-4	DOWNSTREAM CSN1a INTERGENIC
2R	16390911	2R_16390911_SNP [dm3] 2R_20503406_SNP [dm6]	C	T	9.371e^-8	2.270e^-4	UPSTREAM Obp57c & 1 other INTERGENIC	regulatory region REDfly_CRMs
X	20759375	X_20759375_SNP [dm3] X_20888348_SNP [dm6]	A	T	9.630e^-8	2.330e^-4	INTRON shakB
2R	8985572	2R_8985572_SNP [dm3] 2R_13098067_SNP [dm6]	C	T	9.657e^-8	2.333e^-4	INTERGENIC
3L	18263393	3L_18263393_SNP [dm3] 3L_18270293_SNP [dm6]	C	A	9.667e^-8	2.333e^-4	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	23475845	3R_23475845_SNP [dm3] 3R_27650123_SNP [dm6]	T	C	9.692e^-8	2.336e^-4	DOWNSTREAM tau INTRON tau
2L	8668772	2L_8668772_SNP [dm3] 2L_8668772_SNP [dm6]	C	T	9.707e^-8	2.336e^-4	UTR_3_PRIME Sema-1a DOWNSTREAM Sema-1a
3L	8215777	3L_8215777_SNP [dm3] 3L_8222677_SNP [dm6]	A	T	9.741e^-8	2.340e^-4	NON_SYNONYMOUS_CODING CG13678	TF binding site mE1_TFBS_cad
X	3776843	X_3776843_SNP [dm3] X_3882810_SNP [dm6]	A	G	9.750e^-8	2.340e^-4	UTR_3_PRIME VhaAC39-1
3L	4221770	3L_4221770_SNP [dm3] 3L_4221770_SNP [dm6]	G	A	9.769e^-8	2.342e^-4	INTRON CG43367 EXON CR32252	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1468749	2L_1468749_SNP [dm3] 2L_1468749_SNP [dm6]	A	T	9.784e^-8	2.343e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16955172	2R_16955172_SNP [dm3] 2R_21067667_SNP [dm6]	T	G	1.018e^-7	2.432e^-4	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
3L	9173777	3L_9173777_SNP [dm3] 3L_9180677_SNP [dm6]	C	T	1.018e^-7	2.432e^-4	INTRON Rdl
3L	3799425	3L_3799425_SNP [dm3] 3L_3799425_SNP [dm6]	G	A	1.026e^-7	2.448e^-4	INTRON CG32264
X	14857139	X_14857139_SNP [dm3] X_14963106_SNP [dm6]	C	T	1.037e^-7	2.471e^-4	INTRON eag
3R	12469605	3R_12469605_SNP [dm3] 3R_16643883_SNP [dm6]	G	A	1.050e^-7	2.498e^-4	UTR_5_PRIME CG10326 DOWNSTREAM nonA-l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	3789154	3L_3789154_SNP [dm3] 3L_3789154_SNP [dm6]	T	G	1.062e^-7	2.523e^-4	INTRON CG32264	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	11770515	2R_11770515_SNP [dm3] 2R_15883010_SNP [dm6]	C	T	1.079e^-7	2.561e^-4	INTRON sli
3L	3892569	3L_3892569_SNP [dm3] 3L_3892569_SNP [dm6]	C	T	1.095e^-7	2.594e^-4	UPSTREAM Fie & 1 other DOWNSTREAM snRNA:U11 INTERGENIC
3L	3798634	3L_3798634_SNP [dm3] 3L_3798634_SNP [dm6]	T	C	1.102e^-7	2.608e^-4	INTRON CG32264
2R	2403553	2R_2403553_SNP [dm3] 2R_6516048_SNP [dm6]	C	G	1.106e^-7	2.614e^-4	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	3643743	3L_3643743_SNP [dm3] 3L_3643743_SNP [dm6]	C	T	1.115e^-7	2.631e^-4	INTRON dar1
3L	7906853	3L_7906853_SNP [dm3] 3L_7913753_SNP [dm6]	C	T	1.116e^-7	2.632e^-4	UTR_3_PRIME CG8281 & 1 other	TF binding site mE1_TFBS_chinmo
2R	19505770	2R_19505770_SNP [dm3] 2R_23618247_SNP [dm6]	T	C	1.120e^-7	2.637e^-4	INTERGENIC
3R	21126139	3R_21126139_SNP [dm3] 3R_25300417_SNP [dm6]	T	G	1.125e^-7	2.646e^-4	UPSTREAM CG31288 & 1 other INTERGENIC
2L	1971746	2L_1971746_SNP [dm3] 2L_1971746_SNP [dm6]	C	T	1.145e^-7	2.680e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	20207626	2R_20207626_DEL [dm3] 2R_24320103_DEL [dm6]	CA	C	1.145e^-7	2.680e^-4	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10985484	3L_10985484_SNP [dm3] 3L_10992384_SNP [dm6]	A	C	1.145e^-7	2.680e^-4	INTRON klu
3L	8987968	3L_8987968_SNP [dm3] 3L_8994868_SNP [dm6]	C	T	1.145e^-7	2.680e^-4	SYNONYMOUS_CODING smg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5566243	3L_5566243_SNP [dm3] 3L_5573143_SNP [dm6]	A	T	1.156e^-7	2.696e^-4	INTRON Msr-110
3L	5569599	3L_5569599_SNP [dm3] 3L_5576499_SNP [dm6]	T	A	1.159e^-7	2.696e^-4	INTRON Msr-110
3L	8666377	3L_8666377_SNP [dm3] 3L_8673277_SNP [dm6]	C	T	1.159e^-7	2.696e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8666467	3L_8666467_SNP [dm3] 3L_8673367_SNP [dm6]	C	T	1.159e^-7	2.696e^-4	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	3806728	3L_3806728_SNP [dm3] 3L_3806728_SNP [dm6]	A	G	1.161e^-7	2.696e^-4	START_GAINED IntS10 UTR_5_PRIME IntS10 UPSTREAM ntc & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	3832651	3L_3832651_SNP [dm3] 3L_3832651_SNP [dm6]	G	A	1.161e^-7	2.696e^-4	SYNONYMOUS_CODING enc
3L	18263533	3L_18263533_SNP [dm3] 3L_18270433_SNP [dm6]	C	A	1.172e^-7	2.720e^-4	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	10655882	2L_10655882_SNP [dm3] 2L_10655882_SNP [dm6]	T	C	1.187e^-7	2.746e^-4	INTERGENIC
3R	27189893	3R_27189893_SNP [dm3] 3R_31364171_SNP [dm6]	G	A	1.187e^-7	2.746e^-4	INTRON CG34347
2L	10458124	2L_10458124_SNP [dm3] 2L_10458124_SNP [dm6]	A	C	1.195e^-7	2.763e^-4	UPSTREAM CG5322 INTRON LM408	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9617620	2L_9617620_SNP [dm3] 2L_9617620_SNP [dm6]	G	A	1.210e^-7	2.794e^-4	SYNONYMOUS_CODING GlcAT-S INTRON GlcAT-S	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	22747324	3R_22747324_SNP [dm3] 3R_26921602_SNP [dm6]	G	T	1.241e^-7	2.862e^-4	INTRON sda
3L	18263359	3L_18263359_INS [dm3] 3L_18270259_INS [dm6]	C	CCAAAGACACTAGAATATTA...	1.253e^-7	2.885e^-4	INTERGENIC
2R	10578770	2R_10578770_SNP [dm3] 2R_14691265_SNP [dm6]	C	G	1.266e^-7	2.912e^-4	INTRON mspo
3L	18263627	3L_18263627_SNP [dm3] 3L_18270527_SNP [dm6]	C	A	1.322e^-7	3.036e^-4	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	18908549	2L_18908549_SNP [dm3] 2L_18908549_SNP [dm6]	G	T	1.337e^-7	3.064e^-4	INTERGENIC
X	6825220	X_6825220_SNP [dm3] X_6931187_SNP [dm6]	T	G	1.338e^-7	3.064e^-4	INTRON CG14431
3R	20229135	3R_20229135_SNP [dm3] 3R_24403413_SNP [dm6]	C	A	1.339e^-7	3.064e^-4	SYNONYMOUS_CODING nAChRalpha1
2L	12822232	2L_12822232_DEL [dm3] 2L_12822232_DEL [dm6]	ACA	A	1.343e^-7	3.067e^-4	UTR_5_PRIME kek1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7091079	3L_7091079_SNP [dm3] 3L_7097979_SNP [dm6]	G	A	1.344e^-7	3.067e^-4	INTRON form3
3L	3882309	3L_3882309_SNP [dm3] 3L_3882309_SNP [dm6]	C	T	1.359e^-7	3.099e^-4	INTERGENIC
2R	12443252	2R_12443252_SNP [dm3] 2R_16555747_SNP [dm6]	G	A	1.376e^-7	3.133e^-4	SYNONYMOUS_CODING Syn2
2L	4212146	2L_4212146_SNP [dm3] 2L_4212146_SNP [dm6]	T	C	1.400e^-7	3.177e^-4	INTRON ft	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1975179	2L_1975179_SNP [dm3] 2L_1975179_SNP [dm6]	C	G	1.400e^-7	3.177e^-4	NON_SYNONYMOUS_CODING Der-1 DOWNSTREAM CG15356
2R	12441664	2R_12441664_SNP [dm3] 2R_16554159_SNP [dm6]	C	T	1.404e^-7	3.177e^-4	UPSTREAM Syn2 INTRON Syn2	TF binding site BDTNP1_TFBS_twi
2R	13918882	2R_13918882_SNP [dm3] 2R_18031377_SNP [dm6]	C	T	1.404e^-7	3.177e^-4	INTERGENIC
3L	9790329	3L_9790329_SNP [dm3] 3L_9797229_SNP [dm6]	A	G	1.404e^-7	3.177e^-4	INTRON Zasp67
3L	4648554	3L_4648554_SNP [dm3] 3L_4648554_SNP [dm6]	A	T	1.405e^-7	3.177e^-4	UTR_5_PRIME CG32238 INTRON axo	TF binding site BDTNP1_TFBS_prd
3L	5910023	3L_5910023_SNP [dm3] 3L_5916923_SNP [dm6]	C	T	1.417e^-7	3.200e^-4	NON_SYNONYMOUS_CODING CG13288 DOWNSTREAM CG10483
3L	3799432	3L_3799432_DEL [dm3] 3L_3799432_DEL [dm6]	AAA	A	1.429e^-7	3.218e^-4	INTRON CG32264
3L	3799440	3L_3799440_SNP [dm3] 3L_3799440_SNP [dm6]	T	C	1.429e^-7	3.218e^-4	INTRON CG32264
X	12966445	X_12966445_SNP [dm3] X_13072412_SNP [dm6]	A	T	1.445e^-7	3.248e^-4	SYNONYMOUS_CODING rad
X	5698543	X_5698543_SNP [dm3] X_5804510_SNP [dm6]	A	G	1.446e^-7	3.248e^-4	UPSTREAM Cpr5C INTERGENIC
2R	2416572	2R_2416572_SNP [dm3] 2R_6529067_SNP [dm6]	G	T	1.447e^-7	3.248e^-4	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	13033826	2L_13033826_SNP [dm3] 2L_13033826_SNP [dm6]	C	G	1.455e^-7	3.254e^-4	INTRON CG9932
2L	1455920	2L_1455920_SNP [dm3] 2L_1455920_SNP [dm6]	G	A	1.455e^-7	3.254e^-4	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8666309	3L_8666309_SNP [dm3] 3L_8673209_SNP [dm6]	T	C	1.456e^-7	3.254e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21126131	3R_21126131_SNP [dm3] 3R_25300409_SNP [dm6]	G	A	1.457e^-7	3.254e^-4	UPSTREAM CG31288 & 1 other INTERGENIC
2L	11409714	2L_11409714_SNP [dm3] 2L_11409714_SNP [dm6]	T	C	1.464e^-7	3.261e^-4	INTERGENIC	regulatory region REDfly_CRMs
2R	8218072	2R_8218072_SNP [dm3] 2R_12330567_SNP [dm6]	A	G	1.464e^-7	3.261e^-4	SYNONYMOUS_CODING garz	TF binding site mE1_TFBS_cad
3L	5687448	3L_5687448_SNP [dm3] 3L_5694348_SNP [dm6]	C	A	1.473e^-7	3.276e^-4	INTRON sif
3R	23255532	3R_23255532_SNP [dm3] 3R_27429810_SNP [dm6]	C	G	1.474e^-7	3.276e^-4	INTRON side
2L	3631869	2L_3631869_SNP [dm3] 2L_3631869_SNP [dm6]	A	C	1.491e^-7	3.311e^-4	UTR_5_PRIME for INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	5566282	3L_5566282_SNP [dm3] 3L_5573182_SNP [dm6]	G	A	1.503e^-7	3.332e^-4	INTRON Msr-110
3L	5217162	3L_5217162_SNP [dm3] 3L_5224062_SNP [dm6]	T	A	1.511e^-7	3.346e^-4	INTRON shep
3L	3850885	3L_3850885_SNP [dm3] 3L_3850885_SNP [dm6]	G	T	1.512e^-7	3.346e^-4	INTRON Awh
3L	3782585	3L_3782585_SNP [dm3] 3L_3782585_SNP [dm6]	T	G	1.515e^-7	3.347e^-4	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	16275365	3L_16275365_SNP [dm3] 3L_16282265_SNP [dm6]	C	G	1.517e^-7	3.347e^-4	UPSTREAM CG13049 DOWNSTREAM CG13048 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	18995125	3R_18995125_SNP [dm3] 3R_23169403_SNP [dm6]	G	A	1.521e^-7	3.353e^-4	INTRON Irk1
3L	8809842	3L_8809842_SNP [dm3] 3L_8816742_SNP [dm6]	C	A	1.523e^-7	3.354e^-4	INTERGENIC
3R	12469388	3R_12469388_SNP [dm3] 3R_16643666_SNP [dm6]	T	A	1.530e^-7	3.364e^-4	UTR_5_PRIME CG10326 UPSTREAM CG10326 DOWNSTREAM nonA-l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2R	12362054	2R_12362054_DEL [dm3] 2R_16474549_DEL [dm6]	TAATTAAAATCTAATAT...	T	1.549e^-7	3.397e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3870727	3L_3870727_INS [dm3] 3L_3870727_INS [dm6]	T	TAAATAT	1.550e^-7	3.397e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3871834	3L_3871834_SNP [dm3] 3L_3871834_SNP [dm6]	G	A	1.550e^-7	3.397e^-4	INTERGENIC
X	3770050	X_3770050_SNP [dm3] X_3876017_SNP [dm6]	C	G	1.578e^-7	3.455e^-4	SYNONYMOUS_CODING CG2930
3L	3702092	3L_3702092_SNP [dm3] 3L_3702092_SNP [dm6]	G	A	1.596e^-7	3.489e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10255283	X_10255283_SNP [dm3] X_10361250_SNP [dm6]	A	G	1.624e^-7	3.539e^-4	INTRON l_1_G0289
X	10399510	X_10399510_SNP [dm3] X_10505477_SNP [dm6]	C	A	1.624e^-7	3.539e^-4	INTRON spri
X	10576381	X_10576381_SNP [dm3] X_10682348_SNP [dm6]	T	C	1.624e^-7	3.539e^-4	INTRON X11Lbeta
X	14852133	X_14852133_SNP [dm3] X_14958100_SNP [dm6]	T	A	1.673e^-7	3.640e^-4	INTRON eag
2L	5615236	2L_5615236_SNP [dm3] 2L_5615236_SNP [dm6]	A	G	1.677e^-7	3.645e^-4	INTRON CG14010 EXON CR44795	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2671936	2L_2671936_SNP [dm3] 2L_2671936_SNP [dm6]	T	C	1.691e^-7	3.672e^-4	SYNONYMOUS_CODING Gr23a
3L	14650813	3L_14650813_SNP [dm3] 3L_14657713_SNP [dm6]	C	G	1.694e^-7	3.673e^-4	INTRON dlp
X	7237159	X_7237159_SNP [dm3] X_7343126_SNP [dm6]	T	G	1.701e^-7	3.684e^-4	DOWNSTREAM CBP INTRON CR44357 & 1 other
2L	20885371	2L_20885371_SNP [dm3] 2L_20885371_SNP [dm6]	G	A	1.726e^-7	3.733e^-4	SYNONYMOUS_CODING sky INTRON sky & 1 other
X	3769824	X_3769824_SNP [dm3] X_3875791_SNP [dm6]	G	A	1.732e^-7	3.743e^-4	UTR_5_PRIME CG2930 INTRON CG2930
2R	12864260	2R_12864260_SNP [dm3] 2R_16976755_SNP [dm6]	T	C	1.745e^-7	3.766e^-4	INTRON Cbp53E
3R	25168756	3R_25168756_DEL [dm3] 3R_29343034_DEL [dm6]	TCT	T	1.764e^-7	3.802e^-4	INTERGENIC
3L	3790458	3L_3790458_DEL [dm3] 3L_3790458_DEL [dm6]	TTT	T	1.813e^-7	3.905e^-4	UPSTREAM CG32266 INTRON CG32264	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	487163	2L_487163_SNP [dm3] 2L_487163_SNP [dm6]	A	T	1.817e^-7	3.907e^-4	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	5478114	3L_5478114_SNP [dm3] 3L_5485014_SNP [dm6]	A	G	1.844e^-7	3.962e^-4	INTERGENIC
X	10256694	X_10256694_SNP [dm3] X_10362661_SNP [dm6]	T	A	1.854e^-7	3.974e^-4	INTRON l_1_G0289	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_zfh1
X	10256695	X_10256695_SNP [dm3] X_10362662_SNP [dm6]	G	A	1.854e^-7	3.974e^-4	INTRON l_1_G0289	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_zfh1
2L	10655978	2L_10655978_SNP [dm3] 2L_10655978_SNP [dm6]	T	A	1.876e^-7	4.016e^-4	INTERGENIC
3L	8805336	3L_8805336_SNP [dm3] 3L_8812236_SNP [dm6]	G	A	1.901e^-7	4.049e^-4	DOWNSTREAM CG13309 INTERGENIC
3L	5566168	3L_5566168_SNP [dm3] 3L_5573068_SNP [dm6]	T	C	1.902e^-7	4.049e^-4	INTRON Msr-110
2R	954249	2R_954249_SNP [dm3] 2R_5066744_SNP [dm6]	G	A	1.904e^-7	4.049e^-4	SYNONYMOUS_CODING TpnC41C
2R	17459341	2R_17459341_SNP [dm3] 2R_21571836_SNP [dm6]	G	A	1.907e^-7	4.049e^-4	UPSTREAM CG10440 INTRON CG10440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18519622	2R_18519622_SNP [dm3] 2R_22632117_SNP [dm6]	G	A	1.907e^-7	4.049e^-4	SYNONYMOUS_CODING CG33143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4936919	3L_4936919_SNP [dm3] 3L_4936919_SNP [dm6]	T	C	1.907e^-7	4.049e^-4	UTR_3_PRIME Con
3L	5143425	3L_5143425_SNP [dm3] 3L_5150325_SNP [dm6]	A	G	1.907e^-7	4.049e^-4	SYNONYMOUS_CODING Gen DOWNSTREAM Aats-ala-m	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19455368	2R_19455368_SNP [dm3] 2R_23567845_SNP [dm6]	G	T	1.944e^-7	4.124e^-4	UPSTREAM apt INTRON apt
3L	7950230	3L_7950230_SNP [dm3] 3L_7957130_SNP [dm6]	T	C	1.961e^-7	4.151e^-4	INTERGENIC
3L	7950243	3L_7950243_SNP [dm3] 3L_7957143_SNP [dm6]	T	G	1.961e^-7	4.151e^-4	INTERGENIC
X	5019268	X_5019268_SNP [dm3] X_5125235_SNP [dm6]	T	C	1.966e^-7	4.155e^-4	INTRON rg & 1 other
X	6983817	X_6983817_SNP [dm3] X_7089784_SNP [dm6]	T	C	1.973e^-7	4.168e^-4	INTRON Sxl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	9021631	3L_9021631_SNP [dm3] 3L_9028531_SNP [dm6]	C	T	1.981e^-7	4.179e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	15590066	3L_15590066_SNP [dm3] 3L_15596966_SNP [dm6]	T	G	1.998e^-7	4.210e^-4	INTRON RhoGAP71E	TF binding site mE1_TFBS_inv
X	4675224	X_4675224_INS [dm3] X_4781191_INS [dm6]	C	CC	2.004e^-7	4.218e^-4	INTERGENIC
2R	2474937	2R_2474937_INS [dm3] 2R_6587432_INS [dm6]	T	TCGCCACTCCTGAACCAGGA...	2.009e^-7	4.221e^-4	INTRON jing
X	10252781	X_10252781_SNP [dm3] X_10358748_SNP [dm6]	A	C	2.010e^-7	4.221e^-4	SYNONYMOUS_CODING l_1_G0289	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4711328	3L_4711328_SNP [dm3] 3L_4711328_SNP [dm6]	T	A	2.014e^-7	4.225e^-4	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_gt mE1_TFBS_inv
2L	2681191	2L_2681191_SNP [dm3] 2L_2681191_SNP [dm6]	A	G	2.030e^-7	4.246e^-4	INTRON CG31690
X	9917512	X_9917512_SNP [dm3] X_10023479_SNP [dm6]	T	A	2.035e^-7	4.246e^-4	INTRON Cht6	TF binding site BDTNP1_TFBS_twi
X	9917568	X_9917568_SNP [dm3] X_10023535_SNP [dm6]	C	G	2.035e^-7	4.246e^-4	INTRON Cht6	TF binding site BDTNP1_TFBS_twi
2R	13392218	2R_13392218_SNP [dm3] 2R_17504713_SNP [dm6]	G	T	2.037e^-7	4.246e^-4	INTRON CG43164	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_HSA mE1_TFBS_sens
3L	5568539	3L_5568539_SNP [dm3] 3L_5575439_SNP [dm6]	T	A	2.038e^-7	4.246e^-4	UPSTREAM Msr-110 INTRON Msr-110
3L	5568551	3L_5568551_DEL [dm3] 3L_5575451_DEL [dm6]	TGTCCC	A	2.038e^-7	4.246e^-4	UPSTREAM Msr-110 INTRON Msr-110
2L	9618271	2L_9618271_SNP [dm3] 2L_9618271_SNP [dm6]	G	C	2.086e^-7	4.341e^-4	INTRON GlcAT-S
2L	9948307	2L_9948307_SNP [dm3] 2L_9948307_SNP [dm6]	G	C	2.124e^-7	4.416e^-4	UPSTREAM CG5853 INTERGENIC	TF binding site mE1_TFBS_inv
3L	8809937	3L_8809937_SNP [dm3] 3L_8816837_SNP [dm6]	G	C	2.148e^-7	4.460e^-4	INTERGENIC
2L	22538187	2L_22538187_SNP [dm3] 2L_22645455_SNP [dm6]	A	G	2.162e^-7	4.469e^-4	INTRON CG40006
X	14860193	X_14860193_SNP [dm3] X_14966160_SNP [dm6]	T	A	2.162e^-7	4.469e^-4	INTRON eag
X	14860591	X_14860591_SNP [dm3] X_14966558_SNP [dm6]	A	G	2.162e^-7	4.469e^-4	INTRON eag
X	14860842	X_14860842_SNP [dm3] X_14966809_SNP [dm6]	A	C	2.162e^-7	4.469e^-4	INTRON eag
2L	1968637	2L_1968637_SNP [dm3] 2L_1968637_SNP [dm6]	G	A	2.171e^-7	4.482e^-4	INTRON erm
2L	10137910	2L_10137910_SNP [dm3] 2L_10137910_SNP [dm6]	T	G	2.190e^-7	4.516e^-4	INTRON CG44153
2R	9108743	2R_9108743_SNP [dm3] 2R_13221238_SNP [dm6]	G	A	2.209e^-7	4.551e^-4	UTR_3_PRIME Fsn UPSTREAM CG4646 DOWNSTREAM CG17059	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	516184	2L_516184_SNP [dm3] 2L_516184_SNP [dm6]	C	T	2.214e^-7	4.556e^-4	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	24497448	3R_24497448_SNP [dm3] 3R_28671726_SNP [dm6]	G	C	2.260e^-7	4.646e^-4	SYNONYMOUS_CODING CG9989	TF binding site mE1_TFBS_bab1 mE1_TFBS_sens
3L	4121032	3L_4121032_SNP [dm3] 3L_4121032_SNP [dm6]	C	T	2.277e^-7	4.675e^-4	INTRON Chd64
3L	10505066	3L_10505066_SNP [dm3] 3L_10511966_SNP [dm6]	C	A	2.321e^-7	4.761e^-4	INTRON A2bp1
2R	12818205	2R_12818205_SNP [dm3] 2R_16930700_SNP [dm6]	G	C	2.328e^-7	4.771e^-4	INTRON Pkc53E
3R	22635832	3R_22635832_SNP [dm3] 3R_26810110_SNP [dm6]	A	G	2.380e^-7	4.872e^-4	INTRON Tl
2R	6978945	2R_6978945_SNP [dm3] 2R_11091440_SNP [dm6]	A	G	2.409e^-7	4.909e^-4	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	5803568	3L_5803568_SNP [dm3] 3L_5810468_SNP [dm6]	C	T	2.409e^-7	4.909e^-4	UTR_5_PRIME S6k UPSTREAM CG5537	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	22630516	3R_22630516_SNP [dm3] 3R_26804794_SNP [dm6]	T	A	2.409e^-7	4.909e^-4	DOWNSTREAM snoRNA:Me28S-U1554 INTRON Tl
X	18787121	X_18787121_SNP [dm3] X_18893088_SNP [dm6]	T	C	2.409e^-7	4.909e^-4	NON_SYNONYMOUS_CODING CG7358	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
2L	20681036	2L_20681036_SNP [dm3] 2L_20681036_SNP [dm6]	G	T	2.413e^-7	4.911e^-4	NON_SYNONYMOUS_CODING Cen	TF binding site mE1_TFBS_sens
2R	8014237	2R_8014237_DEL [dm3] 2R_12126732_DEL [dm6]	CA	C	2.439e^-7	4.959e^-4	INTERGENIC
X	9921342	X_9921342_SNP [dm3] X_10027309_SNP [dm6]	C	T	2.443e^-7	4.962e^-4	INTRON Cht6
3L	6232708	3L_6232708_SNP [dm3] 3L_6239608_SNP [dm6]	C	G	2.458e^-7	4.987e^-4	UTR_5_PRIME CG10226 UPSTREAM CG10226 DOWNSTREAM Mdr65
3L	5579337	3L_5579337_SNP [dm3] 3L_5586237_SNP [dm6]	G	C	2.471e^-7	5.008e^-4	NON_SYNONYMOUS_CODING l_3_psg2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	1560610	3L_1560610_SNP [dm3] 3L_1560610_SNP [dm6]	A	C	2.477e^-7	5.014e^-4	NON_SYNONYMOUS_CODING CG7879 DOWNSTREAM Pex10	TF binding site mE1_TFBS_inv
X	20573918	X_20573918_DEL [dm3] X_20702891_DEL [dm6]	ACTGAA	A	2.480e^-7	5.015e^-4	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	19691521	2R_19691521_SNP [dm3] 2R_23803998_SNP [dm6]	G	T	2.483e^-7	5.016e^-4	UPSTREAM CG5539 DOWNSTREAM CG30177 & 1 other INTERGENIC
3L	4711327	3L_4711327_SNP [dm3] 3L_4711327_SNP [dm6]	G	A	2.487e^-7	5.018e^-4	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_gt mE1_TFBS_inv
3R	22746508	3R_22746508_SNP [dm3] 3R_26920786_SNP [dm6]	G	A	2.514e^-7	5.067e^-4	INTRON sda
3R	23565470	3R_23565470_SNP [dm3] 3R_27739748_SNP [dm6]	G	A	2.563e^-7	5.160e^-4	INTRON Ets98B
3L	3617757	3L_3617757_SNP [dm3] 3L_3617757_SNP [dm6]	G	C	2.601e^-7	5.164e^-4	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_sens
3L	3618043	3L_3618043_SNP [dm3] 3L_3618043_SNP [dm6]	T	C	2.601e^-7	5.164e^-4	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_sens
3L	3618108	3L_3618108_SNP [dm3] 3L_3618108_SNP [dm6]	G	A	2.601e^-7	5.164e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad
3L	3618403	3L_3618403_SNP [dm3] 3L_3618403_SNP [dm6]	A	G	2.601e^-7	5.164e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3625482	3L_3625482_SNP [dm3] 3L_3625482_SNP [dm6]	A	G	2.601e^-7	5.164e^-4	UPSTREAM dar1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3791439	3L_3791439_SNP [dm3] 3L_3791439_SNP [dm6]	G	T	2.601e^-7	5.164e^-4	UTR_3_PRIME CG32266 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3833694	3L_3833694_SNP [dm3] 3L_3833694_SNP [dm6]	C	T	2.601e^-7	5.164e^-4	INTRON enc
3L	3834023	3L_3834023_SNP [dm3] 3L_3834023_SNP [dm6]	T	C	2.601e^-7	5.164e^-4	INTRON enc
3L	3843841	3L_3843841_SNP [dm3] 3L_3843841_SNP [dm6]	T	A	2.601e^-7	5.164e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4082346	3L_4082346_DEL [dm3] 3L_4082346_DEL [dm6]	GGGATTCAATAG...	G	2.601e^-7	5.164e^-4	INTRON Gad1
3L	4614290	3L_4614290_INS [dm3] 3L_4614290_INS [dm6]	G	GCCAATATGGCAATGGC...	2.601e^-7	5.164e^-4	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	4614292	3L_4614292_DEL [dm3] 3L_4614292_DEL [dm6]	AAAGCAGAAC	A	2.601e^-7	5.164e^-4	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	2533529	X_2533529_SNP [dm3] X_2639496_SNP [dm6]	C	T	2.601e^-7	5.164e^-4	INTRON sgg	TF binding site BDTNP1_TFBS_dl
2L	9196140	2L_9196140_SNP [dm3] 2L_9196140_SNP [dm6]	T	C	2.626e^-7	5.194e^-4	INTRON tai
2R	8178590	2R_8178590_SNP [dm3] 2R_12291085_SNP [dm6]	G	T	2.626e^-7	5.194e^-4	INTRON CG42700
3L	7860706	3L_7860706_SNP [dm3] 3L_7867606_SNP [dm6]	A	C	2.626e^-7	5.194e^-4	UPSTREAM Pdp1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5568548	3L_5568548_SNP [dm3] 3L_5575448_SNP [dm6]	C	A	2.627e^-7	5.194e^-4	UPSTREAM Msr-110 INTRON Msr-110
3L	3850897	3L_3850897_SNP [dm3] 3L_3850897_SNP [dm6]	G	T	2.634e^-7	5.203e^-4	INTRON Awh
2R	9122289	2R_9122289_SNP [dm3] 2R_13234784_SNP [dm6]	C	T	2.650e^-7	5.223e^-4	SYNONYMOUS_CODING CG4670	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11607663	2L_11607663_SNP [dm3] 2L_11607663_SNP [dm6]	T	G	2.650e^-7	5.223e^-4	INTRON kek2	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9582030	3L_9582030_SNP [dm3] 3L_9588930_SNP [dm6]	T	G	2.668e^-7	5.252e^-4	INTRON CG42673
3L	9966173	3L_9966173_SNP [dm3] 3L_9973073_SNP [dm6]	T	G	2.706e^-7	5.306e^-4	START_GAINED vnc UTR_5_PRIME vnc INTRON vnc & 1 other	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
3L	9966181	3L_9966181_SNP [dm3] 3L_9973081_SNP [dm6]	G	A	2.706e^-7	5.306e^-4	UTR_5_PRIME vnc INTRON vnc & 1 other	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
3L	9966297	3L_9966297_SNP [dm3] 3L_9973197_SNP [dm6]	T	C	2.706e^-7	5.306e^-4	SYNONYMOUS_CODING CG42455 UTR_5_PRIME vnc	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
3L	9966878	3L_9966878_SNP [dm3] 3L_9973778_SNP [dm6]	C	T	2.706e^-7	5.306e^-4	NON_SYNONYMOUS_CODING vnc UTR_3_PRIME CG42455 UPSTREAM dpr6
2R	15215533	2R_15215533_SNP [dm3] 2R_19328028_SNP [dm6]	G	A	2.819e^-7	5.520e^-4	SYNONYMOUS_CODING Rgk1
3R	21126188	3R_21126188_SNP [dm3] 3R_25300466_SNP [dm6]	C	G	2.842e^-7	5.556e^-4	UPSTREAM CG31288 & 1 other INTERGENIC
3L	16247455	3L_16247455_SNP [dm3] 3L_16254355_SNP [dm6]	A	T	2.843e^-7	5.556e^-4	INTERGENIC
2L	516157	2L_516157_SNP [dm3] 2L_516157_SNP [dm6]	A	T	2.864e^-7	5.592e^-4	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	7829514	2L_7829514_SNP [dm3] 2L_7829514_SNP [dm6]	G	A	2.884e^-7	5.606e^-4	INTRON mts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7829598	2L_7829598_SNP [dm3] 2L_7829598_SNP [dm6]	C	T	2.884e^-7	5.606e^-4	INTRON mts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9189335	2L_9189335_SNP [dm3] 2L_9189335_SNP [dm6]	A	G	2.884e^-7	5.606e^-4	INTRON tai
3R	25414085	3R_25414085_SNP [dm3] 3R_29588363_SNP [dm6]	T	C	2.884e^-7	5.606e^-4	UPSTREAM CG7567 DOWNSTREAM CG11470 INTERGENIC
2R	3136811	2R_3136811_SNP [dm3] 2R_7249306_SNP [dm6]	G	T	2.917e^-7	5.643e^-4	UTR_5_PRIME Gadd45	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	3136958	2R_3136958_SNP [dm3] 2R_7249453_SNP [dm6]	C	T	2.917e^-7	5.643e^-4	SYNONYMOUS_CODING Gadd45	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
X	5575609	X_5575609_SNP [dm3] X_5681576_SNP [dm6]	T	C	2.926e^-7	5.643e^-4	SYNONYMOUS_CODING Gr5a EXON CR44958	TF binding site mE1_TFBS_cad
2R	8014240	2R_8014240_SNP [dm3] 2R_12126735_SNP [dm6]	A	G	2.971e^-7	5.643e^-4	INTERGENIC
3R	26263005	3R_26263005_SNP [dm3] 3R_30437283_SNP [dm6]	G	A	2.977e^-7	5.643e^-4	INTRON CG15537
X	1500956	X_1500956_SNP [dm3] X_1606923_SNP [dm6]	C	T	2.978e^-7	5.643e^-4	INTRON br & 1 other
3L	3931831	3L_3931831_SNP [dm3] 3L_3931831_SNP [dm6]	G	C	2.981e^-7	5.643e^-4	INTRON Eip63F-1
2R	19902585	2R_19902585_SNP [dm3] 2R_24015062_SNP [dm6]	T	G	2.985e^-7	5.643e^-4	NON_SYNONYMOUS_CODING CG4324 UPSTREAM Unc-89	TF binding site mE1_TFBS_chinmo
3L	12600338	3L_12600338_SNP [dm3] 3L_12607238_SNP [dm6]	C	T	2.985e^-7	5.643e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	12602500	3L_12602500_DEL [dm3] 3L_12609400_DEL [dm6]	GAAC	G	2.985e^-7	5.643e^-4	UPSTREAM caup INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12605689	3L_12605689_SNP [dm3] 3L_12612589_SNP [dm6]	C	G	2.985e^-7	5.643e^-4	INTRON caup
3L	6581769	3L_6581769_SNP [dm3] 3L_6588669_SNP [dm6]	A	T	2.985e^-7	5.643e^-4	INTRON CG18769 & 1 other
3L	3543095	3L_3543095_DEL [dm3] 3L_3543095_DEL [dm6]	TA	T	3.006e^-7	5.643e^-4	UPSTREAM Eip63E INTRON Eip63E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	20746696	X_20746696_SNP [dm3] X_20875669_SNP [dm6]	A	T	3.021e^-7	5.643e^-4	DOWNSTREAM CR11235 INTRON shakB
2L	9269770	2L_9269770_SNP [dm3] 2L_9269770_SNP [dm6]	T	A	3.024e^-7	5.643e^-4	INTRON Ggamma30A
2R	16374438	2R_16374438_SNP [dm3] 2R_20486933_SNP [dm6]	G	C	3.024e^-7	5.643e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3393265	3L_3393265_SNP [dm3] 3L_3393265_SNP [dm6]	C	A	3.024e^-7	5.643e^-4	UPSTREAM CR45737 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3418266	3L_3418266_SNP [dm3] 3L_3418266_SNP [dm6]	G	A	3.024e^-7	5.643e^-4	UPSTREAM sty INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3419687	3L_3419687_SNP [dm3] 3L_3419687_SNP [dm6]	T	G	3.024e^-7	5.643e^-4	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	3522156	3L_3522156_SNP [dm3] 3L_3522156_SNP [dm6]	T	G	3.024e^-7	5.643e^-4	DOWNSTREAM CR45043 INTRON Eip63E
3L	3610606	3L_3610606_SNP [dm3] 3L_3610606_SNP [dm6]	T	G	3.024e^-7	5.643e^-4	DOWNSTREAM Eip63E INTERGENIC	TF binding site mE1_TFBS_inv
3L	3611287	3L_3611287_SNP [dm3] 3L_3611287_SNP [dm6]	C	A	3.024e^-7	5.643e^-4	UPSTREAM CG10359 DOWNSTREAM Eip63E INTERGENIC
3L	3855349	3L_3855349_SNP [dm3] 3L_3855349_SNP [dm6]	T	G	3.024e^-7	5.643e^-4	INTRON Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	3855355	3L_3855355_SNP [dm3] 3L_3855355_SNP [dm6]	A	T	3.024e^-7	5.643e^-4	INTRON Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	3855356	3L_3855356_INS [dm3] 3L_3855356_INS [dm6]	T	TATT	3.024e^-7	5.643e^-4	INTRON Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	3935127	3L_3935127_SNP [dm3] 3L_3935127_SNP [dm6]	G	A	3.024e^-7	5.643e^-4	DOWNSTREAM CG10866 INTRON Eip63F-1 EXON Eip63F-2
3L	3952345	3L_3952345_SNP [dm3] 3L_3952345_SNP [dm6]	C	A	3.024e^-7	5.643e^-4	NON_SYNONYMOUS_CODING CG14984
3L	3952638	3L_3952638_SNP [dm3] 3L_3952638_SNP [dm6]	T	A	3.024e^-7	5.643e^-4	UPSTREAM CG14984 INTERGENIC
3L	3955729	3L_3955729_SNP [dm3] 3L_3955729_SNP [dm6]	T	A	3.024e^-7	5.643e^-4	UTR_3_PRIME CG12605
3L	4084385	3L_4084385_SNP [dm3] 3L_4084385_SNP [dm6]	C	A	3.024e^-7	5.643e^-4	INTRON Gad1
3L	5315477	3L_5315477_SNP [dm3] 3L_5322377_SNP [dm6]	G	A	3.024e^-7	5.643e^-4	INTERGENIC
3L	5343930	3L_5343930_SNP [dm3] 3L_5350830_SNP [dm6]	C	T	3.024e^-7	5.643e^-4	INTRON lama
3L	5386885	3L_5386885_SNP [dm3] 3L_5393785_SNP [dm6]	G	A	3.024e^-7	5.643e^-4	INTERGENIC
3L	5604104	3L_5604104_SNP [dm3] 3L_5611004_SNP [dm6]	G	A	3.024e^-7	5.643e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	5645522	3L_5645522_SNP [dm3] 3L_5652422_SNP [dm6]	C	A	3.024e^-7	5.643e^-4	DOWNSTREAM Blimp-1 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	5686074	3L_5686074_SNP [dm3] 3L_5692974_SNP [dm6]	T	G	3.024e^-7	5.643e^-4	INTRON sif
3L	5687431	3L_5687431_SNP [dm3] 3L_5694331_SNP [dm6]	G	A	3.024e^-7	5.643e^-4	INTRON sif
3R	23082283	3R_23082283_SNP [dm3] 3R_27256561_SNP [dm6]	T	C	3.024e^-7	5.643e^-4	DOWNSTREAM woc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	23082288	3R_23082288_SNP [dm3] 3R_27256566_SNP [dm6]	G	A	3.024e^-7	5.643e^-4	DOWNSTREAM woc & 1 other INTERGENIC
X	5945892	X_5945892_SNP [dm3] X_6051859_SNP [dm6]	C	T	3.024e^-7	5.643e^-4	INTRON CG5921
2R	2467307	2R_2467307_SNP [dm3] 2R_6579802_SNP [dm6]	T	C	3.065e^-7	5.714e^-4	INTRON jing	TF binding site BDTNP1_TFBS_dl
3R	21291462	3R_21291462_SNP [dm3] 3R_25465740_SNP [dm6]	C	T	3.079e^-7	5.734e^-4	INTRON Fur1
X	10302786	X_10302786_SNP [dm3] X_10408753_SNP [dm6]	A	T	3.083e^-7	5.735e^-4	UTR_3_PRIME flw DOWNSTREAM flw

By genomic position
Variant impact
Gene name

Microbiota_OTU034 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results