DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.502e^-14)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

10622 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	15999607	X_15999607_DEL [dm3] X_16105574_DEL [dm6]	ATACTGAAAACACGTCAATT...	A	1.409e^-59	2.621e^-53	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	4529063	3L_4529063_SNP [dm3] 3L_4529063_SNP [dm6]	A	G	1.311e^-58	1.219e^-52	INTRON Tie
X	15999596	X_15999596_DEL [dm3] X_16105563_DEL [dm6]	TTTAA	T	4.343e^-58	2.020e^-52	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	15999603	X_15999603_SNP [dm3] X_16105570_SNP [dm6]	A	C	4.343e^-58	2.020e^-52	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	14751162	2R_14751162_SNP [dm3] 2R_18863657_SNP [dm6]	C	G	7.516e^-42	2.797e^-36	UPSTREAM CG43070 DOWNSTREAM CG43069 & 1 other INTERGENIC
3L	11299568	3L_11299568_SNP [dm3] 3L_11306468_SNP [dm6]	G	A	1.477e^-20	4.581e^-15	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11299517	3L_11299517_SNP [dm3] 3L_11306417_SNP [dm6]	A	T	4.040e^-20	1.074e^-14	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9310023	2R_9310023_SNP [dm3] 2R_13422518_SNP [dm6]	G	A	1.050e^-19	2.443e^-14	DOWNSTREAM CG30060 INTRON CG42321	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22445385	3L_22445385_SNP [dm3] 3L_22452285_SNP [dm6]	G	A	1.325e^-19	2.738e^-14	INTERGENIC
2L	1139590	2L_1139590_SNP [dm3] 2L_1139590_SNP [dm6]	C	T	6.308e^-18	6.903e^-13	NON_SYNONYMOUS_CODING CG4577	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10339932	3L_10339932_SNP [dm3] 3L_10346832_SNP [dm6]	T	C	6.308e^-18	6.903e^-13	INTERGENIC
3L	17541363	3L_17541363_SNP [dm3] 3L_17548263_SNP [dm6]	G	T	6.308e^-18	6.903e^-13	SYNONYMOUS_CODING Jon74E
3L	17541378	3L_17541378_SNP [dm3] 3L_17548278_SNP [dm6]	C	T	6.308e^-18	6.903e^-13	SYNONYMOUS_CODING Jon74E
3L	2805769	3L_2805769_SNP [dm3] 3L_2805769_SNP [dm6]	G	T	6.308e^-18	6.903e^-13	INTRON CG43444
3L	2805775	3L_2805775_DEL [dm3] 3L_2805775_DEL [dm6]	TGCATTTTTT	T	6.308e^-18	6.903e^-13	INTRON CG43444
3L	2813433	3L_2813433_SNP [dm3] 3L_2813433_SNP [dm6]	C	T	6.308e^-18	6.903e^-13	INTRON CG43444
X	3273509	X_3273509_SNP [dm3] X_3379476_SNP [dm6]	T	C	6.308e^-18	6.903e^-13	INTRON dm & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1606380	2L_1606380_INS [dm3] 2L_1606380_INS [dm6]	T	TT	1.177e^-17	1.053e^-12	INTRON CG31935 & 1 other
3L	1339101	3L_1339101_SNP [dm3] 3L_1339101_SNP [dm6]	C	T	1.177e^-17	1.053e^-12	SYNONYMOUS_CODING l_3_02640 DOWNSTREAM CG2199
2R	10862187	2R_10862187_SNP [dm3] 2R_14974682_SNP [dm6]	G	A	1.188e^-17	1.053e^-12	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna
2R	11862920	2R_11862920_SNP [dm3] 2R_15975415_SNP [dm6]	C	T	1.188e^-17	1.053e^-12	NON_SYNONYMOUS_CODING Strn-Mlck
3L	11307999	3L_11307999_SNP [dm3] 3L_11314899_SNP [dm6]	G	C	1.263e^-17	1.068e^-12	UPSTREAM CR44361 INTERGENIC
3L	18606241	3L_18606241_SNP [dm3] 3L_18613141_SNP [dm6]	A	T	2.088e^-17	1.562e^-12	SYNONYMOUS_CODING CG32199 INTRON CG4174 & 1 other	TF binding site mE1_TFBS_HSA
3R	20930743	3R_20930743_SNP [dm3] 3R_25105021_SNP [dm6]	A	T	2.088e^-17	1.562e^-12	SYNONYMOUS_CODING CG34027
3L	18686014	3L_18686014_SNP [dm3] 3L_18692914_SNP [dm6]	A	C	2.099e^-17	1.562e^-12	DOWNSTREAM CR43987 INTERGENIC
3R	12997579	3R_12997579_SNP [dm3] 3R_17171857_SNP [dm6]	C	A	2.617e^-17	1.872e^-12	INTRON Mur89F
3L	11300491	3L_11300491_SNP [dm3] 3L_11307391_SNP [dm6]	G	A	6.627e^-17	4.567e^-12	INTERGENIC
2R	4584918	2R_4584918_SNP [dm3] 2R_8697413_SNP [dm6]	T	A	7.113e^-17	4.657e^-12	INTRON CG8738	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14395467	2L_14395467_SNP [dm3] 2L_14395467_SNP [dm6]	C	G	7.260e^-17	4.657e^-12	INTRON elB
2R	4584917	2R_4584917_SNP [dm3] 2R_8697412_SNP [dm6]	A	T	1.286e^-16	7.891e^-12	INTRON CG8738	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11862665	2R_11862665_SNP [dm3] 2R_15975160_SNP [dm6]	A	G	1.315e^-16	7.891e^-12	SYNONYMOUS_CODING Strn-Mlck
2R	17749611	2R_17749611_SNP [dm3] 2R_21862106_SNP [dm6]	T	G	1.391e^-16	8.087e^-12	DOWNSTREAM CG9294 INTERGENIC
2R	9309216	2R_9309216_SNP [dm3] 2R_13421711_SNP [dm6]	C	T	2.433e^-16	1.371e^-11	SPLICE_SITE_REGION CG42321 INTRON CG42321
2L	13691200	2L_13691200_SNP [dm3] 2L_13691200_SNP [dm6]	T	G	3.149e^-16	1.723e^-11	INTRON CG31814
3L	11299527	3L_11299527_SNP [dm3] 3L_11306427_SNP [dm6]	G	A	3.495e^-16	1.858e^-11	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11845302	2R_11845302_SNP [dm3] 2R_15957797_SNP [dm6]	C	T	8.446e^-16	4.365e^-11	UPSTREAM Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14705610	2R_14705610_MNP [dm3] 2R_18818105_MNP [dm6]	TAG	ATT	8.825e^-16	4.437e^-11	INTERGENIC
2R	18206201	2R_18206201_SNP [dm3] 2R_22318696_SNP [dm6]	C	A	1.147e^-15	5.613e^-11	DOWNSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17144452	2R_17144452_SNP [dm3] 2R_21256947_SNP [dm6]	T	C	1.202e^-15	5.732e^-11	INTRON Rgk3
2R	14705596	2R_14705596_SNP [dm3] 2R_18818091_SNP [dm6]	A	C	1.592e^-15	7.051e^-11	INTERGENIC
2R	14705598	2R_14705598_DEL [dm3] 2R_18818093_DEL [dm6]	TA	T	1.592e^-15	7.051e^-11	INTERGENIC
2R	14705604	2R_14705604_DEL [dm3] 2R_18818099_DEL [dm6]	GTG	A	1.592e^-15	7.051e^-11	INTERGENIC
2L	13118560	2L_13118560_SNP [dm3] 2L_13118560_SNP [dm6]	T	C	3.860e^-15	1.670e^-10	UPSTREAM CG43050 DOWNSTREAM CR44198 INTERGENIC
3L	5330553	3L_5330553_SNP [dm3] 3L_5337453_SNP [dm6]	G	A	6.629e^-15	2.803e^-10	INTERGENIC
3L	14568299	3L_14568299_SNP [dm3] 3L_14575199_SNP [dm6]	T	A	7.247e^-15	2.996e^-10	INTERGENIC	regulatory region REDfly_CRMs
3L	22434233	3L_22434233_SNP [dm3] 3L_22441133_SNP [dm6]	C	T	1.772e^-14	7.168e^-10	INTERGENIC
2R	8176319	2R_8176319_INS [dm3] 2R_12288814_INS [dm6]	A	ATA	2.794e^-14	1.106e^-9	INTRON CG42700
2R	7070703	2R_7070703_SNP [dm3] 2R_11183198_SNP [dm6]	A	T	3.277e^-14	1.270e^-9	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10285026	3R_10285026_SNP [dm3] 3R_14459304_SNP [dm6]	C	T	4.276e^-14	1.623e^-9	INTRON cv-c
3L	672999	3L_672999_SNP [dm3] 3L_672999_SNP [dm6]	G	T	8.968e^-14	3.337e^-9	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15484565	2R_15484565_SNP [dm3] 2R_19597060_SNP [dm6]	G	T	1.708e^-13	6.231e^-9	DOWNSTREAM CG16716 INTRON sm
2L	16341791	2L_16341791_SNP [dm3] 2L_16341791_SNP [dm6]	C	A	1.781e^-13	6.329e^-9	SYNONYMOUS_CODING CG44405 DOWNSTREAM chif & 1 other
2L	9540281	2L_9540281_SNP [dm3] 2L_9540281_SNP [dm6]	C	T	1.803e^-13	6.329e^-9	UPSTREAM CG17855 DOWNSTREAM Oatp30B INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	11018907	2L_11018907_SNP [dm3] 2L_11018907_SNP [dm6]	A	T	1.848e^-13	6.365e^-9	DOWNSTREAM CG14913 INTRON Samuel
3L	20147197	3L_20147197_SNP [dm3] 3L_20154097_SNP [dm6]	T	C	2.958e^-13	9.956e^-9	SYNONYMOUS_CODING CG42674	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16153386	2R_16153386_SNP [dm3] 2R_20265881_SNP [dm6]	C	T	2.997e^-13	9.956e^-9	SYNONYMOUS_CODING CG8908 UPSTREAM CR43812	TF binding site mE1_TFBS_cad
3L	22430883	3L_22430883_SNP [dm3] 3L_22437783_SNP [dm6]	T	C	3.606e^-13	1.171e^-8	INTERGENIC
2L	1171061	2L_1171061_SNP [dm3] 2L_1171061_SNP [dm6]	T	C	3.651e^-13	1.171e^-8	SYNONYMOUS_CODING CG5118 UPSTREAM Plap DOWNSTREAM CG31922	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10356404	2L_10356404_SNP [dm3] 2L_10356404_SNP [dm6]	G	T	3.829e^-13	1.207e^-8	UTR_5_PRIME CG5367 UPSTREAM CG5045	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7070714	2R_7070714_SNP [dm3] 2R_11183209_SNP [dm6]	A	G	4.224e^-13	1.310e^-8	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14563879	3L_14563879_SNP [dm3] 3L_14570779_SNP [dm6]	T	A	6.162e^-13	1.849e^-8	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14563913	3L_14563913_SNP [dm3] 3L_14570813_SNP [dm6]	A	G	6.162e^-13	1.849e^-8	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1151448	2L_1151448_DEL [dm3] 2L_1151448_DEL [dm6]	CCAACC	C	6.807e^-13	2.010e^-8	UTR_3_PRIME Vps29 UPSTREAM Tfb4 DOWNSTREAM capt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16599721	2R_16599721_SNP [dm3] 2R_20712216_SNP [dm6]	C	T	8.773e^-13	2.511e^-8	INTRON dpr
2R	16599834	2R_16599834_SNP [dm3] 2R_20712329_SNP [dm6]	C	T	8.773e^-13	2.511e^-8	INTRON dpr
2L	14402210	2L_14402210_SNP [dm3] 2L_14402210_SNP [dm6]	G	A	9.212e^-13	2.520e^-8	INTRON elB
2L	14405011	2L_14405011_SNP [dm3] 2L_14405011_SNP [dm6]	T	G	9.212e^-13	2.520e^-8	INTRON elB	TF binding site mE1_TFBS_cad
2L	14405090	2L_14405090_SNP [dm3] 2L_14405090_SNP [dm6]	T	C	9.212e^-13	2.520e^-8	INTRON elB	TF binding site mE1_TFBS_cad
X	10856368	X_10856368_SNP [dm3] X_10962335_SNP [dm6]	C	T	1.031e^-12	2.779e^-8	SYNONYMOUS_CODING Myo10A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	10860418	X_10860418_DEL [dm3] X_10966385_DEL [dm6]	AAA	A	1.133e^-12	2.957e^-8	INTRON C901
X	10858856	X_10858856_SNP [dm3] X_10964823_SNP [dm6]	C	T	1.323e^-12	2.957e^-8	NON_SYNONYMOUS_CODING C901 DOWNSTREAM Myo10A	TF binding site mE1_TFBS_chinmo
2R	6442702	2R_6442702_SNP [dm3] 2R_10555197_SNP [dm6]	T	A	1.323e^-12	2.957e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	1531542	3L_1531542_SNP [dm3] 3L_1531542_SNP [dm6]	C	G	1.323e^-12	2.957e^-8	UPSTREAM Ir62a INTRON CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13822317	3R_13822317_SNP [dm3] 3R_17996595_SNP [dm6]	C	T	1.324e^-12	2.957e^-8	INTRON cpo
3L	16329130	3L_16329130_SNP [dm3] 3L_16336030_SNP [dm6]	C	G	1.342e^-12	2.957e^-8	INTERGENIC
3R	17997267	3R_17997267_SNP [dm3] 3R_22171545_SNP [dm6]	C	G	1.342e^-12	2.957e^-8	INTRON SKIP	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2999103	3R_2999103_SNP [dm3] 3R_7173381_SNP [dm6]	G	A	1.342e^-12	2.957e^-8	INTRON sas	TF binding site BDTNP1_TFBS_Med
3R	3042293	3R_3042293_SNP [dm3] 3R_7216571_SNP [dm6]	G	T	1.342e^-12	2.957e^-8	INTRON CG14606
2R	12483928	2R_12483928_SNP [dm3] 2R_16596423_SNP [dm6]	A	T	1.358e^-12	2.957e^-8	INTRON CG8303
3L	14563847	3L_14563847_SNP [dm3] 3L_14570747_SNP [dm6]	G	A	1.364e^-12	2.957e^-8	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14563862	3L_14563862_SNP [dm3] 3L_14570762_SNP [dm6]	A	T	1.364e^-12	2.957e^-8	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14563875	3L_14563875_SNP [dm3] 3L_14570775_SNP [dm6]	T	A	1.364e^-12	2.957e^-8	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14563876	3L_14563876_INS [dm3] 3L_14570776_INS [dm6]	A	ACGCTT	1.364e^-12	2.957e^-8	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14399917	2L_14399917_SNP [dm3] 2L_14399917_SNP [dm6]	A	C	1.382e^-12	2.957e^-8	INTRON elB
2L	14395980	2L_14395980_SNP [dm3] 2L_14395980_SNP [dm6]	A	T	1.397e^-12	2.957e^-8	INTRON elB
2L	14396746	2L_14396746_SNP [dm3] 2L_14396746_SNP [dm6]	T	C	1.397e^-12	2.957e^-8	INTRON elB
2L	14405626	2L_14405626_SNP [dm3] 2L_14405626_SNP [dm6]	T	A	1.414e^-12	2.957e^-8	INTRON elB	TF binding site mE1_TFBS_cad
X	10859326	X_10859326_SNP [dm3] X_10965293_SNP [dm6]	G	T	1.414e^-12	2.957e^-8	INTRON C901	TF binding site mE1_TFBS_chinmo
X	10859337	X_10859337_DEL [dm3] X_10965304_DEL [dm6]	GTTTTGCTGTTA...	G	1.414e^-12	2.957e^-8	INTRON C901	TF binding site mE1_TFBS_chinmo
2L	15264038	2L_15264038_SNP [dm3] 2L_15264038_SNP [dm6]	G	A	1.480e^-12	3.044e^-8	NON_SYNONYMOUS_CODING yuri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2L	11185403	2L_11185403_SNP [dm3] 2L_11185403_SNP [dm6]	G	A	1.489e^-12	3.044e^-8	INTRON Ca-beta	TF binding site BDTNP1_TFBS_prd
2L	22904698	2L_22904698_DEL [dm3] 2L_23011966_DEL [dm6]	TT	T	1.516e^-12	3.066e^-8	INTRON Cht3
2L	14402212	2L_14402212_SNP [dm3] 2L_14402212_SNP [dm6]	G	T	1.533e^-12	3.067e^-8	INTRON elB
3R	2991303	3R_2991303_SNP [dm3] 3R_7165581_SNP [dm6]	T	A	1.737e^-12	3.437e^-8	INTRON sas
X	10860593	X_10860593_SNP [dm3] X_10966560_SNP [dm6]	T	C	1.938e^-12	3.796e^-8	SPLICE_SITE_REGION C901 INTRON C901
2R	6442641	2R_6442641_SNP [dm3] 2R_10555136_SNP [dm6]	T	G	1.980e^-12	3.836e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3R	11629877	3R_11629877_SNP [dm3] 3R_15804155_SNP [dm6]	T	C	2.019e^-12	3.872e^-8	UPSTREAM alpha-Man-IIb DOWNSTREAM CG9593 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14399451	2L_14399451_SNP [dm3] 2L_14399451_SNP [dm6]	C	T	2.252e^-12	4.257e^-8	INTRON elB
3L	14563976	3L_14563976_SNP [dm3] 3L_14570876_SNP [dm6]	G	A	2.265e^-12	4.257e^-8	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	7351601	2R_7351601_SNP [dm3] 2R_11464096_SNP [dm6]	G	T	2.397e^-12	4.460e^-8	UTR_3_PRIME E_Pc_ DOWNSTREAM E_Pc_	TF binding site mE1_TFBS_kn
3L	11311578	3L_11311578_SNP [dm3] 3L_11318478_SNP [dm6]	A	G	2.608e^-12	4.787e^-8	INTERGENIC	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	3002861	3R_3002861_DEL [dm3] 3R_7177139_DEL [dm6]	AA	C	2.624e^-12	4.787e^-8	INTRON sas
3R	3035730	3R_3035730_DEL [dm3] 3R_7210008_DEL [dm6]	GAGCTTTGGTACCTTTG...	G	2.707e^-12	4.890e^-8	INTERGENIC
2L	19033512	2L_19033512_SNP [dm3] 2L_19033512_SNP [dm6]	G	T	2.733e^-12	4.890e^-8	UPSTREAM mib2 & 1 other DOWNSTREAM CG31800 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	16232194	2L_16232194_SNP [dm3] 2L_16232194_SNP [dm6]	A	G	2.962e^-12	5.178e^-8	NON_SYNONYMOUS_CODING CG42817	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6442644	2R_6442644_SNP [dm3] 2R_10555139_SNP [dm6]	T	A	2.994e^-12	5.178e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
X	12404466	X_12404466_SNP [dm3] X_12510433_SNP [dm6]	C	G	3.034e^-12	5.178e^-8	INTRON CG2556
X	12404475	X_12404475_MNP [dm3] X_12510442_MNP [dm6]	TTT	AAC	3.034e^-12	5.178e^-8	INTRON CG2556
X	12404479	X_12404479_SNP [dm3] X_12510446_SNP [dm6]	T	C	3.034e^-12	5.178e^-8	INTRON CG2556
3L	14564000	3L_14564000_SNP [dm3] 3L_14570900_SNP [dm6]	T	C	3.142e^-12	5.311e^-8	INTERGENIC
2L	15119107	2L_15119107_SNP [dm3] 2L_15119107_SNP [dm6]	G	A	3.169e^-12	5.311e^-8	UPSTREAM CR43853 INTERGENIC
2R	17131019	2R_17131019_SNP [dm3] 2R_21243514_SNP [dm6]	C	T	3.197e^-12	5.311e^-8	INTRON ASPP
3R	3037224	3R_3037224_SNP [dm3] 3R_7211502_SNP [dm6]	T	C	4.088e^-12	6.672e^-8	INTERGENIC
3R	3042647	3R_3042647_SNP [dm3] 3R_7216925_SNP [dm6]	C	T	4.088e^-12	6.672e^-8	UTR_5_PRIME CG14606 DOWNSTREAM CG14605 INTRON CG14606
2R	6442607	2R_6442607_SNP [dm3] 2R_10555102_SNP [dm6]	G	A	4.515e^-12	7.304e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
X	12404467	X_12404467_SNP [dm3] X_12510434_SNP [dm6]	T	C	4.574e^-12	7.335e^-8	INTRON CG2556
3L	14564003	3L_14564003_INS [dm3] 3L_14570903_INS [dm6]	A	AATAAAA	5.144e^-12	8.180e^-8	INTERGENIC
2R	17942809	2R_17942809_SNP [dm3] 2R_22055304_SNP [dm6]	C	A	5.634e^-12	8.883e^-8	INTERGENIC
2L	14397506	2L_14397506_SNP [dm3] 2L_14397506_SNP [dm6]	G	T	8.171e^-12	1.277e^-7	INTRON elB
2R	6442482	2R_6442482_SNP [dm3] 2R_10554977_SNP [dm6]	T	C	1.042e^-11	1.615e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
X	7533975	X_7533975_SNP [dm3] X_7639942_SNP [dm6]	C	T	1.248e^-11	1.919e^-7	INTRON ct
3L	14563888	3L_14563888_SNP [dm3] 3L_14570788_SNP [dm6]	G	C	1.527e^-11	2.329e^-7	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5346789	3L_5346789_SNP [dm3] 3L_5353689_SNP [dm6]	C	T	2.050e^-11	3.101e^-7	UTR_5_PRIME lama INTRON lama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6271564	2R_6271564_SNP [dm3] 2R_10384059_SNP [dm6]	A	G	2.109e^-11	3.164e^-7	INTRON CG42732
2L	10450086	2L_10450086_SNP [dm3] 2L_10450086_SNP [dm6]	C	A	2.393e^-11	3.561e^-7	DOWNSTREAM ppk10 & 1 other INTERGENIC
2L	20208988	2L_20208988_SNP [dm3] 2L_20208988_SNP [dm6]	C	A	2.737e^-11	4.041e^-7	INTERGENIC	transposable element FlyBase
2L	9726771	2L_9726771_DEL [dm3] 2L_9726771_DEL [dm6]	AATA	A	2.881e^-11	4.220e^-7	INTRON Nckx30C
2L	2229213	2L_2229213_SNP [dm3] 2L_2229213_SNP [dm6]	C	T	3.770e^-11	5.479e^-7	INTRON rti
3L	22433842	3L_22433842_SNP [dm3] 3L_22440742_SNP [dm6]	G	A	4.538e^-11	6.545e^-7	INTERGENIC
3L	22430569	3L_22430569_SNP [dm3] 3L_22437469_SNP [dm6]	G	A	4.897e^-11	6.975e^-7	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22305017	3L_22305017_SNP [dm3] 3L_22311917_SNP [dm6]	T	C	4.912e^-11	6.975e^-7	INTRON Ten-m
3L	10406661	3L_10406661_SNP [dm3] 3L_10413561_SNP [dm6]	G	A	5.007e^-11	7.057e^-7	SYNONYMOUS_CODING CG12362	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13129694	2L_13129694_SNP [dm3] 2L_13129694_SNP [dm6]	A	C	5.054e^-11	7.070e^-7	UPSTREAM CG5122 INTERGENIC
2R	18206172	2R_18206172_SNP [dm3] 2R_22318667_SNP [dm6]	T	G	7.096e^-11	9.852e^-7	DOWNSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	12937048	3L_12937048_SNP [dm3] 3L_12943948_SNP [dm6]	A	C	8.155e^-11	1.124e^-6	INTERGENIC
3L	16330349	3L_16330349_SNP [dm3] 3L_16337249_SNP [dm6]	C	A	8.273e^-11	1.132e^-6	INTERGENIC
2L	2228180	2L_2228180_SNP [dm3] 2L_2228180_SNP [dm6]	A	G	1.094e^-10	1.485e^-6	UPSTREAM CR44114 INTRON rti	TF binding site BDTNP1_TFBS_dl
2R	6442616	2R_6442616_INS [dm3] 2R_10555111_INS [dm6]	T	TTAAT	1.142e^-10	1.539e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2R	14704169	2R_14704169_SNP [dm3] 2R_18816664_SNP [dm6]	G	A	1.595e^-10	2.135e^-6	UPSTREAM CG15096 INTERGENIC
3L	5464414	3L_5464414_SNP [dm3] 3L_5471314_SNP [dm6]	T	C	1.812e^-10	2.390e^-6	INTERGENIC
3L	5464423	3L_5464423_SNP [dm3] 3L_5471323_SNP [dm6]	A	G	1.812e^-10	2.390e^-6	INTERGENIC
3L	17770783	3L_17770783_SNP [dm3] 3L_17777683_SNP [dm6]	T	C	2.025e^-10	2.647e^-6	INTERGENIC
3L	22428803	3L_22428803_SNP [dm3] 3L_22435703_SNP [dm6]	A	C	2.056e^-10	2.647e^-6	INTERGENIC
3R	7141473	3R_7141473_SNP [dm3] 3R_11315751_SNP [dm6]	C	T	2.062e^-10	2.647e^-6	INTERGENIC
X	7998307	X_7998307_SNP [dm3] X_8104274_SNP [dm6]	A	G	2.063e^-10	2.647e^-6	SYNONYMOUS_CODING Gclc	TF binding site mE1_TFBS_chinmo
2R	6048509	2R_6048509_SNP [dm3] 2R_10161004_SNP [dm6]	G	C	2.088e^-10	2.661e^-6	INTRON KCNQ	TF binding site mE1_TFBS_HSA
2L	13683882	2L_13683882_SNP [dm3] 2L_13683882_SNP [dm6]	A	G	2.199e^-10	2.783e^-6	INTRON CG31814
3L	7700697	3L_7700697_SNP [dm3] 3L_7707597_SNP [dm6]	C	G	2.310e^-10	2.884e^-6	INTRON CG32373 & 1 other	TF binding site mE1_TFBS_chinmo
2R	7365933	2R_7365933_SNP [dm3] 2R_11478428_SNP [dm6]	C	T	2.310e^-10	2.884e^-6	INTRON inv	TF binding site BDTNP1_TFBS_dl
3L	5464503	3L_5464503_SNP [dm3] 3L_5471403_SNP [dm6]	C	A	2.496e^-10	3.096e^-6	INTERGENIC
2L	4252815	2L_4252815_SNP [dm3] 2L_4252815_SNP [dm6]	T	C	2.747e^-10	3.377e^-6	INTERGENIC
2L	14250962	2L_14250962_SNP [dm3] 2L_14250962_SNP [dm6]	A	C	2.774e^-10	3.377e^-6	INTERGENIC
3L	8556386	3L_8556386_SNP [dm3] 3L_8563286_SNP [dm6]	G	T	2.777e^-10	3.377e^-6	INTRON rhea
2L	3867675	2L_3867675_SNP [dm3] 2L_3867675_SNP [dm6]	C	T	2.831e^-10	3.421e^-6	UPSTREAM Cep97 DOWNSTREAM CG3964 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	10380032	2L_10380032_SNP [dm3] 2L_10380032_SNP [dm6]	T	C	2.979e^-10	3.576e^-6	UPSTREAM gny DOWNSTREAM dpr19 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2229720	2L_2229720_SNP [dm3] 2L_2229720_SNP [dm6]	T	C	3.145e^-10	3.751e^-6	SYNONYMOUS_CODING rti	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20465716	X_20465716_SNP [dm3] X_20594689_SNP [dm6]	G	T	3.321e^-10	3.936e^-6	INTRON RunxA
3R	11000618	3R_11000618_DEL [dm3] 3R_15174896_DEL [dm6]	TAGAT	T	3.433e^-10	4.042e^-6	DOWNSTREAM Mf INTRON Mf & 1 other
2R	16395644	2R_16395644_SNP [dm3] 2R_20508139_SNP [dm6]	C	G	3.582e^-10	4.191e^-6	UPSTREAM CR44646 INTERGENIC
X	1402909	X_1402909_SNP [dm3] X_1508876_SNP [dm6]	C	T	3.761e^-10	4.373e^-6	INTRON inc	TF binding site mE1_TFBS_chinmo
3L	8556396	3L_8556396_SNP [dm3] 3L_8563296_SNP [dm6]	C	G	3.915e^-10	4.514e^-6	INTRON rhea
3L	9867118	3L_9867118_SNP [dm3] 3L_9874018_SNP [dm6]	C	A	3.930e^-10	4.514e^-6	INTERGENIC
2R	14563334	2R_14563334_SNP [dm3] 2R_18675829_SNP [dm6]	A	C	4.024e^-10	4.593e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	17875941	2R_17875941_SNP [dm3] 2R_21988436_SNP [dm6]	A	G	4.081e^-10	4.613e^-6	SYNONYMOUS_CODING CG34370	TF binding site mE1_TFBS_cad
2L	7298879	2L_7298879_DEL [dm3] 2L_7298879_DEL [dm6]	TT	T	4.092e^-10	4.613e^-6	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12776371	2L_12776371_SNP [dm3] 2L_12776371_SNP [dm6]	G	T	4.199e^-10	4.678e^-6	INTERGENIC
2L	12776433	2L_12776433_SNP [dm3] 2L_12776433_SNP [dm6]	C	T	4.199e^-10	4.678e^-6	INTERGENIC
2L	1139143	2L_1139143_SNP [dm3] 2L_1139143_SNP [dm6]	A	T	4.334e^-10	4.800e^-6	SYNONYMOUS_CODING CG4577	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4021953	2L_4021953_SNP [dm3] 2L_4021953_SNP [dm6]	A	T	4.610e^-10	5.075e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_jumu
2R	15484577	2R_15484577_SNP [dm3] 2R_19597072_SNP [dm6]	G	C	5.076e^-10	5.478e^-6	DOWNSTREAM CG16716 INTRON sm
3R	13550724	3R_13550724_SNP [dm3] 3R_17725002_SNP [dm6]	C	A	5.082e^-10	5.478e^-6	UTR_5_PRIME Atg8b UPSTREAM Lgr1
2L	10244422	2L_10244422_SNP [dm3] 2L_10244422_SNP [dm6]	T	G	5.094e^-10	5.478e^-6	INTRON CR44995 & 1 other
2L	10245137	2L_10245137_SNP [dm3] 2L_10245137_SNP [dm6]	A	T	5.094e^-10	5.478e^-6	INTRON CR44995 & 1 other
2R	9307572	2R_9307572_SNP [dm3] 2R_13420067_SNP [dm6]	G	C	5.249e^-10	5.612e^-6	SYNONYMOUS_CODING CG42321
2L	20222802	2L_20222802_SNP [dm3] 2L_20222802_SNP [dm6]	A	T	5.504e^-10	5.782e^-6	INTERGENIC	transposable element FlyBase
2R	6042898	2R_6042898_SNP [dm3] 2R_10155393_SNP [dm6]	A	C	5.519e^-10	5.782e^-6	UPSTREAM KCNQ DOWNSTREAM mlt INTRON KCNQ
2R	14742947	2R_14742947_SNP [dm3] 2R_18855442_SNP [dm6]	A	T	5.526e^-10	5.782e^-6	UPSTREAM Jheh1 DOWNSTREAM Jheh2 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2L	12776476	2L_12776476_SNP [dm3] 2L_12776476_SNP [dm6]	A	C	5.532e^-10	5.782e^-6	INTERGENIC
2R	12064869	2R_12064869_DEL [dm3] 2R_16177364_DEL [dm6]	TAAAATCGCA	T	5.896e^-10	6.127e^-6	INTRON Ptp52F
3L	2801082	3L_2801082_SNP [dm3] 3L_2801082_SNP [dm6]	T	A	5.929e^-10	6.128e^-6	INTRON CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	17772223	3L_17772223_SNP [dm3] 3L_17779123_SNP [dm6]	G	T	6.212e^-10	6.385e^-6	INTERGENIC
3L	5331334	3L_5331334_SNP [dm3] 3L_5338234_SNP [dm6]	C	T	6.956e^-10	7.110e^-6	INTERGENIC
2L	15407473	2L_15407473_SNP [dm3] 2L_15407473_SNP [dm6]	T	G	7.114e^-10	7.232e^-6	INTERGENIC
2R	13837917	2R_13837917_SNP [dm3] 2R_17950412_SNP [dm6]	A	G	7.317e^-10	7.359e^-6	INTERGENIC
2R	6046654	2R_6046654_SNP [dm3] 2R_10159149_SNP [dm6]	A	G	7.345e^-10	7.359e^-6	UPSTREAM mlt INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	2598104	3L_2598104_SNP [dm3] 3L_2598104_SNP [dm6]	C	T	7.436e^-10	7.359e^-6	NON_SYNONYMOUS_CODING CG12182	TF binding site mE1_TFBS_sens
3L	2601795	3L_2601795_SNP [dm3] 3L_2601795_SNP [dm6]	C	T	7.436e^-10	7.359e^-6	SYNONYMOUS_CODING Pxn DOWNSTREAM CG16986	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17150467	X_17150467_SNP [dm3] X_17256434_SNP [dm6]	T	C	7.436e^-10	7.359e^-6	INTRON f
X	16859820	X_16859820_SNP [dm3] X_16965787_SNP [dm6]	C	T	7.874e^-10	7.723e^-6	INTRON CG9086	TF binding site BDTNP1_TFBS_twi
3L	12069877	3L_12069877_SNP [dm3] 3L_12076777_SNP [dm6]	T	C	7.887e^-10	7.723e^-6	INTRON Sema-5c
2L	13135526	2L_13135526_SNP [dm3] 2L_13135526_SNP [dm6]	T	C	8.141e^-10	7.929e^-6	DOWNSTREAM CG5122 INTERGENIC
3L	2805543	3L_2805543_SNP [dm3] 3L_2805543_SNP [dm6]	C	T	8.325e^-10	8.025e^-6	INTRON CG43444
3R	13456210	3R_13456210_DEL [dm3] 3R_17630488_DEL [dm6]	AC	A	8.325e^-10	8.025e^-6	UPSTREAM CG43175 DOWNSTREAM tRNA:CR31569 INTERGENIC
2L	4722391	2L_4722391_SNP [dm3] 2L_4722391_SNP [dm6]	C	G	8.514e^-10	8.165e^-6	UTR_3_PRIME CG34351
2L	10144109	2L_10144109_SNP [dm3] 2L_10144109_SNP [dm6]	A	T	8.946e^-10	8.535e^-6	UPSTREAM CG4839 INTRON CG44153
2R	17942724	2R_17942724_SNP [dm3] 2R_22055219_SNP [dm6]	C	G	9.030e^-10	8.571e^-6	INTERGENIC
2L	15507729	2L_15507729_SNP [dm3] 2L_15507729_SNP [dm6]	C	T	9.601e^-10	9.067e^-6	INTERGENIC
3L	6308154	3L_6308154_SNP [dm3] 3L_6315054_SNP [dm6]	T	A	9.848e^-10	9.253e^-6	INTERGENIC
2R	9306908	2R_9306908_SNP [dm3] 2R_13419403_SNP [dm6]	A	T	9.906e^-10	9.261e^-6	SPLICE_SITE_REGION CG42321 INTRON CG42321
2L	19930670	2L_19930670_SNP [dm3] 2L_19930670_SNP [dm6]	C	T	1.025e^-9	9.354e^-6	INTRON sick
2R	18186161	2R_18186161_SNP [dm3] 2R_22298656_SNP [dm6]	C	T	1.025e^-9	9.354e^-6	UTR_3_PRIME wdp	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7375987	2R_7375987_SNP [dm3] 2R_11488482_SNP [dm6]	A	G	1.025e^-9	9.354e^-6	INTRON inv
3L	8509120	3L_8509120_SNP [dm3] 3L_8516020_SNP [dm6]	C	G	1.027e^-9	9.354e^-6	SYNONYMOUS_CODING CG6765	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14205687	3R_14205687_SNP [dm3] 3R_18379965_SNP [dm6]	T	C	1.031e^-9	9.354e^-6	INTRON CG7675
3R	14205707	3R_14205707_SNP [dm3] 3R_18379985_SNP [dm6]	G	T	1.031e^-9	9.354e^-6	INTRON CG7675
3R	4368995	3R_4368995_SNP [dm3] 3R_8543273_SNP [dm6]	C	G	1.055e^-9	9.525e^-6	INTERGENIC
X	13446718	X_13446718_SNP [dm3] X_13552685_SNP [dm6]	T	C	1.067e^-9	9.591e^-6	UTR_3_PRIME CG11816 DOWNSTREAM CG11816
2R	12525752	2R_12525752_SNP [dm3] 2R_16638247_SNP [dm6]	A	C	1.075e^-9	9.594e^-6	UPSTREAM Alk INTRON Alk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15903847	3L_15903847_SNP [dm3] 3L_15910747_SNP [dm6]	A	C	1.078e^-9	9.594e^-6	INTRON sff
X	3721629	X_3721629_SNP [dm3] X_3827596_SNP [dm6]	A	G	1.109e^-9	9.826e^-6	UPSTREAM tRNA:P:3E & 1 other INTRON ec
2L	19387163	2L_19387163_SNP [dm3] 2L_19387163_SNP [dm6]	G	A	1.214e^-9	1.070e^-5	UTR_3_PRIME CG17549 UPSTREAM fon
3L	17770972	3L_17770972_SNP [dm3] 3L_17777872_SNP [dm6]	A	C	1.284e^-9	1.127e^-5	INTERGENIC
3L	8509132	3L_8509132_SNP [dm3] 3L_8516032_SNP [dm6]	T	C	1.338e^-9	1.158e^-5	SYNONYMOUS_CODING CG6765	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15484654	2R_15484654_SNP [dm3] 2R_19597149_SNP [dm6]	C	A	1.355e^-9	1.158e^-5	DOWNSTREAM CG16716 INTRON sm
2R	15484656	2R_15484656_SNP [dm3] 2R_19597151_SNP [dm6]	C	T	1.355e^-9	1.158e^-5	DOWNSTREAM CG16716 INTRON sm
2R	15484657	2R_15484657_SNP [dm3] 2R_19597152_SNP [dm6]	T	G	1.355e^-9	1.158e^-5	DOWNSTREAM CG16716 INTRON sm
3R	6857618	3R_6857618_SNP [dm3] 3R_11031896_SNP [dm6]	G	T	1.359e^-9	1.158e^-5	INTRON CG34114
2L	9875819	2L_9875819_SNP [dm3] 2L_9875819_SNP [dm6]	G	C	1.383e^-9	1.158e^-5	INTRON nAChRalpha6	TF binding site mE1_TFBS_inv
2L	1787036	2L_1787036_SNP [dm3] 2L_1787036_SNP [dm6]	G	T	1.387e^-9	1.158e^-5	INTERGENIC
2L	1790695	2L_1790695_SNP [dm3] 2L_1790695_SNP [dm6]	A	G	1.387e^-9	1.158e^-5	SYNONYMOUS_CODING Gr22c UPSTREAM Gr22d
3L	13468860	3L_13468860_SNP [dm3] 3L_13475760_SNP [dm6]	T	A	1.398e^-9	1.158e^-5	UPSTREAM CG10089 INTERGENIC
2R	7347843	2R_7347843_SNP [dm3] 2R_11460338_SNP [dm6]	G	T	1.419e^-9	1.158e^-5	INTRON E_Pc_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	7347852	2R_7347852_INS [dm3] 2R_11460347_INS [dm6]	T	TGTGCTT	1.419e^-9	1.158e^-5	INTRON E_Pc_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	7347871	2R_7347871_SNP [dm3] 2R_11460366_SNP [dm6]	A	T	1.419e^-9	1.158e^-5	INTRON E_Pc_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	7347911	2R_7347911_SNP [dm3] 2R_11460406_SNP [dm6]	A	T	1.419e^-9	1.158e^-5	INTRON E_Pc_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	7347913	2R_7347913_SNP [dm3] 2R_11460408_SNP [dm6]	C	T	1.419e^-9	1.158e^-5	INTRON E_Pc_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	7347917	2R_7347917_SNP [dm3] 2R_11460412_SNP [dm6]	C	T	1.419e^-9	1.158e^-5	INTRON E_Pc_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	7347923	2R_7347923_SNP [dm3] 2R_11460418_SNP [dm6]	T	C	1.419e^-9	1.158e^-5	INTRON E_Pc_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	21999673	3L_21999673_SNP [dm3] 3L_22006573_SNP [dm6]	T	C	1.468e^-9	1.192e^-5	INTERGENIC
3L	5330849	3L_5330849_SNP [dm3] 3L_5337749_SNP [dm6]	G	A	1.474e^-9	1.192e^-5	INTERGENIC
3L	17437174	3L_17437174_INS [dm3] 3L_17444074_INS [dm6]	T	TAAACTTATGTT...	1.484e^-9	1.195e^-5	INTRON CG18265	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16055067	2L_16055067_SNP [dm3] 2L_16055067_SNP [dm6]	A	G	1.523e^-9	1.216e^-5	INTRON beat-Ia
2L	16058280	2L_16058280_SNP [dm3] 2L_16058280_SNP [dm6]	G	A	1.523e^-9	1.216e^-5	INTRON beat-Ia
X	9093804	X_9093804_SNP [dm3] X_9199771_SNP [dm6]	C	T	1.532e^-9	1.218e^-5	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14705614	2R_14705614_SNP [dm3] 2R_18818109_SNP [dm6]	C	A	1.560e^-9	1.230e^-5	INTERGENIC
2R	14705615	2R_14705615_SNP [dm3] 2R_18818110_SNP [dm6]	A	T	1.560e^-9	1.230e^-5	INTERGENIC
3R	5806070	3R_5806070_SNP [dm3] 3R_9980348_SNP [dm6]	T	A	1.570e^-9	1.232e^-5	INTRON Glut4EF
2L	16058297	2L_16058297_SNP [dm3] 2L_16058297_SNP [dm6]	C	T	1.588e^-9	1.237e^-5	INTRON beat-Ia
3L	10722278	3L_10722278_SNP [dm3] 3L_10729178_SNP [dm6]	C	A	1.589e^-9	1.237e^-5	INTERGENIC
3R	7738804	3R_7738804_SNP [dm3] 3R_11913082_SNP [dm6]	C	G	1.613e^-9	1.250e^-5	INTRON Cad87A
2L	16055041	2L_16055041_SNP [dm3] 2L_16055041_SNP [dm6]	C	T	1.626e^-9	1.255e^-5	INTRON beat-Ia
3L	4529251	3L_4529251_SNP [dm3] 3L_4529251_SNP [dm6]	G	A	1.702e^-9	1.308e^-5	INTRON Tie
2R	18400913	2R_18400913_SNP [dm3] 2R_22513408_SNP [dm6]	T	C	1.708e^-9	1.308e^-5	UTR_5_PRIME px INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Trl
X	4952104	X_4952104_DEL [dm3] X_5058071_DEL [dm6]	AACA	A	1.782e^-9	1.359e^-5	INTRON CR44833 & 1 other
3L	19065429	3L_19065429_DEL [dm3] 3L_19072329_DEL [dm6]	AA	A	1.793e^-9	1.362e^-5	INTRON Mkp3
2L	12632430	2L_12632430_SNP [dm3] 2L_12632430_SNP [dm6]	A	G	1.824e^-9	1.368e^-5	INTRON Ref2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	20031994	3R_20031994_SNP [dm3] 3R_24206272_SNP [dm6]	T	G	1.825e^-9	1.368e^-5	INTRON twin	TF binding site mE1_TFBS_inv
3L	17577012	3L_17577012_SNP [dm3] 3L_17583912_SNP [dm6]	G	A	1.831e^-9	1.368e^-5	INTRON Eip74EF
3L	17577277	3L_17577277_SNP [dm3] 3L_17584177_SNP [dm6]	G	A	1.831e^-9	1.368e^-5	INTRON Eip74EF
2L	11184069	2L_11184069_SNP [dm3] 2L_11184069_SNP [dm6]	A	T	1.853e^-9	1.379e^-5	INTRON Ca-beta
2R	7338664	2R_7338664_SNP [dm3] 2R_11451159_SNP [dm6]	A	G	1.907e^-9	1.414e^-5	UTR_3_PRIME qvr UPSTREAM E_Pc_	TF binding site mE1_TFBS_cad
2L	22879238	2L_22879238_DEL [dm3] 2L_22986506_DEL [dm6]	AA	A	1.986e^-9	1.466e^-5	INTRON cta
2R	776360	2R_776360_SNP [dm3] 2R_4888855_SNP [dm6]	G	A	1.997e^-9	1.468e^-5	INTERGENIC	transposable element FlyBase
2R	7347793	2R_7347793_SNP [dm3] 2R_11460288_SNP [dm6]	A	G	2.004e^-9	1.468e^-5	SYNONYMOUS_CODING E_Pc_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	7744617	3R_7744617_SNP [dm3] 3R_11918895_SNP [dm6]	C	A	2.096e^-9	1.530e^-5	INTRON Cad87A
X	20799700	X_20799700_SNP [dm3] X_20928673_SNP [dm6]	T	A	2.197e^-9	1.597e^-5	INTERGENIC
X	20799882	X_20799882_SNP [dm3] X_20928855_SNP [dm6]	G	A	2.273e^-9	1.645e^-5	INTERGENIC
3L	17577274	3L_17577274_SNP [dm3] 3L_17584174_SNP [dm6]	T	C	2.427e^-9	1.727e^-5	INTRON Eip74EF
2L	4165639	2L_4165639_SNP [dm3] 2L_4165639_SNP [dm6]	T	A	2.497e^-9	1.727e^-5	NON_SYNONYMOUS_CODING Or24a
2R	6612234	2R_6612234_SNP [dm3] 2R_10724729_SNP [dm6]	C	A	2.497e^-9	1.727e^-5	UPSTREAM CG12309 INTRON Rab3
2R	9138183	2R_9138183_SNP [dm3] 2R_13250678_SNP [dm6]	T	G	2.497e^-9	1.727e^-5	NON_SYNONYMOUS_CODING CG4712
2R	9138956	2R_9138956_SNP [dm3] 2R_13251451_SNP [dm6]	C	T	2.497e^-9	1.727e^-5	NON_SYNONYMOUS_CODING CG4712 SYNONYMOUS_CODING CG4712 DOWNSTREAM CG4714
2R	9138965	2R_9138965_SNP [dm3] 2R_13251460_SNP [dm6]	T	C	2.497e^-9	1.727e^-5	NON_SYNONYMOUS_CODING CG4712 SYNONYMOUS_CODING CG4712 DOWNSTREAM CG4714
2R	9139333	2R_9139333_SNP [dm3] 2R_13251828_SNP [dm6]	C	G	2.497e^-9	1.727e^-5	UPSTREAM CG4712 DOWNSTREAM CG4714 INTERGENIC	TF binding site mE1_TFBS_cad
3L	1085723	3L_1085723_SNP [dm3] 3L_1085723_SNP [dm6]	C	T	2.497e^-9	1.727e^-5	INTRON bab1
3L	2814480	3L_2814480_SNP [dm3] 3L_2814480_SNP [dm6]	A	G	2.497e^-9	1.727e^-5	INTRON CG43444
X	16928159	X_16928159_SNP [dm3] X_17034126_SNP [dm6]	A	C	2.497e^-9	1.727e^-5	INTRON CG45002
X	16928160	X_16928160_SNP [dm3] X_17034127_SNP [dm6]	G	A	2.497e^-9	1.727e^-5	INTRON CG45002
X	5574539	X_5574539_SNP [dm3] X_5680506_SNP [dm6]	C	A	2.497e^-9	1.727e^-5	UPSTREAM Gr5a & 1 other DOWNSTREAM CR44958 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	6857462	3R_6857462_SNP [dm3] 3R_11031740_SNP [dm6]	T	C	2.564e^-9	1.767e^-5	INTRON CG34114
2L	10246284	2L_10246284_DEL [dm3] 2L_10246284_DEL [dm6]	AA	A	2.682e^-9	1.797e^-5	UTR_5_PRIME chico DOWNSTREAM CR44995 INTRON chico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1763897	2L_1763897_SNP [dm3] 2L_1763897_SNP [dm6]	C	T	2.745e^-9	1.797e^-5	INTERGENIC
3L	22439994	3L_22439994_DEL [dm3] 3L_22446894_DEL [dm6]	GTCACTCAG	G	2.849e^-9	1.797e^-5	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11000086	3R_11000086_DEL [dm3] 3R_15174364_DEL [dm6]	AG	A	2.852e^-9	1.797e^-5	DOWNSTREAM Mf INTRON Mf & 1 other
2L	5377228	2L_5377228_SNP [dm3] 2L_5377228_SNP [dm6]	C	A	2.869e^-9	1.797e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5377293	2L_5377293_SNP [dm3] 2L_5377293_SNP [dm6]	G	T	2.869e^-9	1.797e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5377549	2L_5377549_SNP [dm3] 2L_5377549_SNP [dm6]	C	T	2.869e^-9	1.797e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5377596	2L_5377596_SNP [dm3] 2L_5377596_SNP [dm6]	A	C	2.869e^-9	1.797e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5378426	2L_5378426_SNP [dm3] 2L_5378426_SNP [dm6]	C	T	2.869e^-9	1.797e^-5	DOWNSTREAM CR42850 INTERGENIC
2R	11685037	2R_11685037_SNP [dm3] 2R_15797532_SNP [dm6]	A	T	2.869e^-9	1.797e^-5	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17440412	2R_17440412_SNP [dm3] 2R_21552907_SNP [dm6]	G	A	2.869e^-9	1.797e^-5	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18007912	2R_18007912_SNP [dm3] 2R_22120407_SNP [dm6]	C	G	2.869e^-9	1.797e^-5	INTRON Vrp1
2R	18397676	2R_18397676_SNP [dm3] 2R_22510171_SNP [dm6]	A	G	2.869e^-9	1.797e^-5	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	11526158	3L_11526158_SNP [dm3] 3L_11533058_SNP [dm6]	G	T	2.869e^-9	1.797e^-5	INTRON Mob2
3L	12065197	3L_12065197_SNP [dm3] 3L_12072097_SNP [dm6]	A	G	2.869e^-9	1.797e^-5	INTRON Sema-5c
3L	12065203	3L_12065203_SNP [dm3] 3L_12072103_SNP [dm6]	C	T	2.869e^-9	1.797e^-5	INTRON Sema-5c
3L	13681597	3L_13681597_SNP [dm3] 3L_13688497_SNP [dm6]	C	T	2.869e^-9	1.797e^-5	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17383310	3L_17383310_SNP [dm3] 3L_17390210_SNP [dm6]	T	C	2.869e^-9	1.797e^-5	INTERGENIC
3L	17384709	3L_17384709_SNP [dm3] 3L_17391609_SNP [dm6]	G	C	2.869e^-9	1.797e^-5	INTERGENIC
3L	17775884	3L_17775884_SNP [dm3] 3L_17782784_SNP [dm6]	A	T	2.869e^-9	1.797e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	672481	3L_672481_SNP [dm3] 3L_672481_SNP [dm6]	C	G	2.869e^-9	1.797e^-5	INTERGENIC	TF binding site mE1_TFBS_cad
X	12529216	X_12529216_SNP [dm3] X_12635183_SNP [dm6]	A	T	2.869e^-9	1.797e^-5	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
X	17580910	X_17580910_SNP [dm3] X_17686877_SNP [dm6]	G	A	2.869e^-9	1.797e^-5	INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21061768	X_21061768_SNP [dm3] X_21190741_SNP [dm6]	A	T	2.869e^-9	1.797e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21061777	X_21061777_DEL [dm3] X_21190750_DEL [dm6]	AA	G	2.869e^-9	1.797e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8199945	X_8199945_SNP [dm3] X_8305912_SNP [dm6]	T	C	2.869e^-9	1.797e^-5	INTRON nAChRalpha3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8200012	X_8200012_SNP [dm3] X_8305979_SNP [dm6]	C	T	2.869e^-9	1.797e^-5	INTRON nAChRalpha3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20799653	X_20799653_SNP [dm3] X_20928626_SNP [dm6]	G	A	2.911e^-9	1.818e^-5	INTERGENIC
X	7568789	X_7568789_SNP [dm3] X_7674756_SNP [dm6]	T	G	2.938e^-9	1.828e^-5	UTR_3_PRIME ct
2R	7347502	2R_7347502_SNP [dm3] 2R_11459997_SNP [dm6]	C	A	2.951e^-9	1.830e^-5	SYNONYMOUS_CODING E_Pc_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	13129398	2L_13129398_SNP [dm3] 2L_13129398_SNP [dm6]	A	G	2.989e^-9	1.841e^-5	INTERGENIC
2L	13129684	2L_13129684_SNP [dm3] 2L_13129684_SNP [dm6]	T	C	2.989e^-9	1.841e^-5	UPSTREAM CG5122 INTERGENIC
X	1902151	X_1902151_SNP [dm3] X_2008118_SNP [dm6]	C	G	3.031e^-9	1.861e^-5	DOWNSTREAM Hr4 INTRON CG4406
X	8001516	X_8001516_SNP [dm3] X_8107483_SNP [dm6]	T	C	3.155e^-9	1.931e^-5	INTRON Gclc
2R	16758540	2R_16758540_SNP [dm3] 2R_20871035_SNP [dm6]	T	C	3.169e^-9	1.933e^-5	DOWNSTREAM IM14 INTRON Ipk1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7421664	2L_7421664_SNP [dm3] 2L_7421664_SNP [dm6]	T	A	3.224e^-9	1.954e^-5	INTRON chm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5308484	3R_5308484_SNP [dm3] 3R_9482762_SNP [dm6]	T	G	3.225e^-9	1.954e^-5	DOWNSTREAM CR45203 INTRON CG16779
3L	595181	3L_595181_SNP [dm3] 3L_595181_SNP [dm6]	C	A	3.266e^-9	1.973e^-5	SYNONYMOUS_CODING MED14	TF binding site mE1_TFBS_cad
2L	6936312	2L_6936312_SNP [dm3] 2L_6936312_SNP [dm6]	C	T	3.340e^-9	2.011e^-5	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7998832	X_7998832_SNP [dm3] X_8104799_SNP [dm6]	T	C	3.350e^-9	2.011e^-5	SYNONYMOUS_CODING Gclc
2R	15286786	2R_15286786_SNP [dm3] 2R_19399281_SNP [dm6]	G	T	3.379e^-9	2.021e^-5	UPSTREAM CR43430 DOWNSTREAM hts INTRON hts	TF binding site BDTNP1_TFBS_dl
2R	13027574	2R_13027574_SNP [dm3] 2R_17140069_SNP [dm6]	C	T	3.403e^-9	2.021e^-5	UPSTREAM CR44386 & 1 other DOWNSTREAM CG43107 & 1 other INTERGENIC
2L	10296912	2L_10296912_SNP [dm3] 2L_10296912_SNP [dm6]	T	G	3.422e^-9	2.021e^-5	UPSTREAM CR44968 INTRON CYLD
2L	10941460	2L_10941460_SNP [dm3] 2L_10941460_SNP [dm6]	T	G	3.422e^-9	2.021e^-5	DOWNSTREAM CR44492 INTRON dpr2
2R	9340284	2R_9340284_SNP [dm3] 2R_13452779_SNP [dm6]	T	G	3.422e^-9	2.021e^-5	DOWNSTREAM arr INTRON cbs
3L	16768392	3L_16768392_SNP [dm3] 3L_16775292_SNP [dm6]	C	T	3.471e^-9	2.044e^-5	SYNONYMOUS_CODING Nrt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	12374632	3R_12374632_SNP [dm3] 3R_16548910_SNP [dm6]	G	A	3.493e^-9	2.044e^-5	INTRON CG42342
3L	11157042	3L_11157042_SNP [dm3] 3L_11163942_SNP [dm6]	G	A	3.493e^-9	2.044e^-5	UTR_3_PRIME CG32082 EXON CR43989
3L	4299027	3L_4299027_SNP [dm3] 3L_4299027_SNP [dm6]	G	A	3.526e^-9	2.049e^-5	START_GAINED dyl UTR_5_PRIME dyl INTRON dyl
3L	11182229	3L_11182229_SNP [dm3] 3L_11189129_SNP [dm6]	C	T	3.546e^-9	2.049e^-5	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
2R	6728411	2R_6728411_SNP [dm3] 2R_10840906_SNP [dm6]	A	G	3.565e^-9	2.049e^-5	NON_SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	7033106	2R_7033106_INS [dm3] 2R_11145601_INS [dm6]	G	CAA	3.646e^-9	2.049e^-5	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7033108	2R_7033108_SNP [dm3] 2R_11145603_SNP [dm6]	T	A	3.646e^-9	2.049e^-5	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7033115	2R_7033115_INS [dm3] 2R_11145610_INS [dm6]	C	CAATACTTAAGCTTGCATCG...	3.646e^-9	2.049e^-5	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7033121	2R_7033121_MNP [dm3] 2R_11145616_MNP [dm6]	AAT	TGG	3.646e^-9	2.049e^-5	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7033128	2R_7033128_INS [dm3] 2R_11145623_INS [dm6]	A	AG	3.646e^-9	2.049e^-5	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7033130	2R_7033130_SNP [dm3] 2R_11145625_SNP [dm6]	A	G	3.646e^-9	2.049e^-5	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7033131	2R_7033131_SNP [dm3] 2R_11145626_SNP [dm6]	C	A	3.646e^-9	2.049e^-5	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7033137	2R_7033137_DEL [dm3] 2R_11145632_DEL [dm6]	TTA	T	3.646e^-9	2.049e^-5	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7033142	2R_7033142_SNP [dm3] 2R_11145637_SNP [dm6]	A	C	3.646e^-9	2.049e^-5	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7033148	2R_7033148_SNP [dm3] 2R_11145643_SNP [dm6]	T	G	3.646e^-9	2.049e^-5	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17440350	2R_17440350_SNP [dm3] 2R_21552845_SNP [dm6]	C	T	3.759e^-9	2.063e^-5	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17384765	3L_17384765_SNP [dm3] 3L_17391665_SNP [dm6]	T	G	3.781e^-9	2.063e^-5	INTERGENIC
2L	3398287	2L_3398287_SNP [dm3] 2L_3398287_SNP [dm6]	G	A	3.782e^-9	2.063e^-5	SYNONYMOUS_CODING CG34175 UPSTREAM CR44792
2R	14476503	2R_14476503_DEL [dm3] 2R_18588998_DEL [dm6]	TATAA	T	3.799e^-9	2.063e^-5	INTRON GEFmeso	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17806513	2R_17806513_SNP [dm3] 2R_21919008_SNP [dm6]	C	G	3.799e^-9	2.063e^-5	INTRON Fili
3L	18648657	3L_18648657_SNP [dm3] 3L_18655557_SNP [dm6]	G	T	3.799e^-9	2.063e^-5	INTRON MYPT-75D
3L	18648666	3L_18648666_SNP [dm3] 3L_18655566_SNP [dm6]	C	T	3.799e^-9	2.063e^-5	INTRON MYPT-75D
3L	19429202	3L_19429202_SNP [dm3] 3L_19436102_SNP [dm6]	A	T	3.799e^-9	2.063e^-5	INTERGENIC
3L	8585686	3L_8585686_SNP [dm3] 3L_8592586_SNP [dm6]	G	C	3.799e^-9	2.063e^-5	NON_SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19390322	2R_19390322_SNP [dm3] 2R_23502799_SNP [dm6]	T	G	3.814e^-9	2.063e^-5	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_inv
2L	11128457	2L_11128457_SNP [dm3] 2L_11128457_SNP [dm6]	G	A	3.821e^-9	2.063e^-5	SYNONYMOUS_CODING Nup160 DOWNSTREAM RfC38	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	5724276	3L_5724276_SNP [dm3] 3L_5731176_SNP [dm6]	G	A	3.821e^-9	2.063e^-5	INTRON sif
2L	15194502	2L_15194502_SNP [dm3] 2L_15194502_SNP [dm6]	T	C	3.834e^-9	2.063e^-5	INTRON CG4168
3L	12066593	3L_12066593_SNP [dm3] 3L_12073493_SNP [dm6]	C	T	3.836e^-9	2.063e^-5	INTRON Sema-5c
X	12529467	X_12529467_SNP [dm3] X_12635434_SNP [dm6]	G	T	3.836e^-9	2.063e^-5	UPSTREAM mir-970 INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16766673	2R_16766673_SNP [dm3] 2R_20879168_SNP [dm6]	C	G	3.903e^-9	2.081e^-5	UPSTREAM Cib2 DOWNSTREAM Ipk1 INTERGENIC
2L	13129635	2L_13129635_SNP [dm3] 2L_13129635_SNP [dm6]	A	T	3.909e^-9	2.081e^-5	UPSTREAM CG5122 INTERGENIC
2L	9117832	2L_9117832_SNP [dm3] 2L_9117832_SNP [dm6]	G	A	3.927e^-9	2.081e^-5	INTERGENIC
3L	17376278	3L_17376278_SNP [dm3] 3L_17383178_SNP [dm6]	A	T	3.927e^-9	2.081e^-5	UPSTREAM CG13728 DOWNSTREAM CG13731 INTERGENIC
2L	13094382	2L_13094382_SNP [dm3] 2L_13094382_SNP [dm6]	A	G	3.937e^-9	2.081e^-5	INTERGENIC
3L	17174497	3L_17174497_SNP [dm3] 3L_17181397_SNP [dm6]	G	C	3.937e^-9	2.081e^-5	INTRON Rbp6
2L	13129548	2L_13129548_SNP [dm3] 2L_13129548_SNP [dm6]	T	C	3.951e^-9	2.083e^-5	INTERGENIC
2L	4837988	2L_4837988_SNP [dm3] 2L_4837988_SNP [dm6]	G	C	4.158e^-9	2.185e^-5	UTR_5_PRIME tank UPSTREAM CG12194	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_zfh1
2R	18241989	2R_18241989_SNP [dm3] 2R_22354484_SNP [dm6]	G	T	4.375e^-9	2.293e^-5	UTR_5_PRIME Liprin-gamma INTRON Liprin-gamma
3L	17422055	3L_17422055_SNP [dm3] 3L_17428955_SNP [dm6]	G	T	4.404e^-9	2.302e^-5	UTR_3_PRIME CG32174 & 1 other UPSTREAM CG33052	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15076771	3R_15076771_SNP [dm3] 3R_19251049_SNP [dm6]	A	G	4.419e^-9	2.303e^-5	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7526993	2L_7526993_SNP [dm3] 2L_7526993_SNP [dm6]	G	A	4.437e^-9	2.306e^-5	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6612167	2R_6612167_SNP [dm3] 2R_10724662_SNP [dm6]	T	G	4.453e^-9	2.308e^-5	UPSTREAM CG12309 INTRON Rab3
2R	12725974	2R_12725974_SNP [dm3] 2R_16838469_SNP [dm6]	C	T	4.500e^-9	2.326e^-5	EXON CR43650	TF binding site BDTNP1_TFBS_Med
2L	17601801	2L_17601801_SNP [dm3] 2L_17601801_SNP [dm6]	C	A	4.629e^-9	2.348e^-5	SYNONYMOUS_CODING Sytalpha
2L	6419612	2L_6419612_SNP [dm3] 2L_6419612_SNP [dm6]	G	A	4.629e^-9	2.348e^-5	SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	718330	2L_718330_SNP [dm3] 2L_718330_SNP [dm6]	C	A	4.635e^-9	2.348e^-5	INTERGENIC
2L	11018894	2L_11018894_SNP [dm3] 2L_11018894_SNP [dm6]	T	A	4.644e^-9	2.348e^-5	DOWNSTREAM CG14913 INTRON Samuel
2L	11018903	2L_11018903_SNP [dm3] 2L_11018903_SNP [dm6]	G	A	4.644e^-9	2.348e^-5	DOWNSTREAM CG14913 INTRON Samuel
2L	11018908	2L_11018908_INS [dm3] 2L_11018908_INS [dm6]	T	TGTCAAAACACATTTA...	4.644e^-9	2.348e^-5	DOWNSTREAM CG14913 INTRON Samuel
2L	11019055	2L_11019055_SNP [dm3] 2L_11019055_SNP [dm6]	G	A	4.644e^-9	2.348e^-5	DOWNSTREAM CG14913 INTRON Samuel
3L	19385361	3L_19385361_SNP [dm3] 3L_19392261_SNP [dm6]	A	T	4.644e^-9	2.348e^-5	INTRON CG32206
3R	13007729	3R_13007729_SNP [dm3] 3R_17182007_SNP [dm6]	C	T	4.668e^-9	2.354e^-5	INTRON Mur89F
2L	4171014	2L_4171014_SNP [dm3] 2L_4171014_SNP [dm6]	A	T	4.722e^-9	2.368e^-5	INTERGENIC
2R	17876115	2R_17876115_SNP [dm3] 2R_21988610_SNP [dm6]	G	A	4.722e^-9	2.368e^-5	SYNONYMOUS_CODING CG34370	TF binding site mE1_TFBS_cad
3L	11182451	3L_11182451_SNP [dm3] 3L_11189351_SNP [dm6]	A	T	4.738e^-9	2.368e^-5	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
2R	10839315	2R_10839315_SNP [dm3] 2R_14951810_SNP [dm6]	G	A	4.748e^-9	2.368e^-5	SYNONYMOUS_CODING aPKC UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13328876	2L_13328876_SNP [dm3] 2L_13328876_SNP [dm6]	T	C	4.917e^-9	2.423e^-5	INTRON CG43778
3L	9917378	3L_9917378_SNP [dm3] 3L_9924278_SNP [dm6]	T	G	4.938e^-9	2.423e^-5	INTRON CG34356
2R	13513370	2R_13513370_SNP [dm3] 2R_17625865_SNP [dm6]	A	T	4.983e^-9	2.423e^-5	INTRON CG10936
2R	13513376	2R_13513376_SNP [dm3] 2R_17625871_SNP [dm6]	C	T	4.983e^-9	2.423e^-5	INTRON CG10936
2R	18052463	2R_18052463_SNP [dm3] 2R_22164958_SNP [dm6]	C	T	4.983e^-9	2.423e^-5	SYNONYMOUS_CODING a UPSTREAM CG34206
2R	15207702	2R_15207702_INS [dm3] 2R_19320197_INS [dm6]	A	ACATTACA	5.013e^-9	2.423e^-5	INTRON Rgk1
2L	21016183	2L_21016183_SNP [dm3] 2L_21016183_SNP [dm6]	T	G	5.021e^-9	2.423e^-5	INTRON CG42238
3L	21834596	3L_21834596_SNP [dm3] 3L_21841496_SNP [dm6]	G	T	5.029e^-9	2.423e^-5	UPSTREAM P5CDh1 DOWNSTREAM CG14563 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_Trl
3L	18643803	3L_18643803_SNP [dm3] 3L_18650703_SNP [dm6]	C	T	5.038e^-9	2.423e^-5	INTRON MYPT-75D
2R	6025600	2R_6025600_SNP [dm3] 2R_10138095_SNP [dm6]	G	T	5.045e^-9	2.423e^-5	SYNONYMOUS_CODING CG12917 DOWNSTREAM gem
3L	20647639	3L_20647639_SNP [dm3] 3L_20654539_SNP [dm6]	T	C	5.062e^-9	2.423e^-5	DOWNSTREAM CR44685 INTERGENIC
X	16603724	X_16603724_INS [dm3] X_16709691_INS [dm6]	A	AA	5.062e^-9	2.423e^-5	INTRON CG4678	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16603727	X_16603727_SNP [dm3] X_16709694_SNP [dm6]	C	A	5.062e^-9	2.423e^-5	INTRON CG4678	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16603730	X_16603730_INS [dm3] X_16709697_INS [dm6]	T	TATTTATTTACCATAGTGG...	5.062e^-9	2.423e^-5	INTRON CG4678	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16603732	X_16603732_SNP [dm3] X_16709699_SNP [dm6]	G	T	5.062e^-9	2.423e^-5	INTRON CG4678	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15031303	2L_15031303_SNP [dm3] 2L_15031303_SNP [dm6]	T	G	5.066e^-9	2.423e^-5	NON_SYNONYMOUS_CODING CG31832 INTRON GABA-B-R1
2L	9101426	2L_9101426_SNP [dm3] 2L_9101426_SNP [dm6]	C	A	5.128e^-9	2.428e^-5	INTERGENIC
2R	19346685	2R_19346685_SNP [dm3] 2R_23459162_SNP [dm6]	T	A	5.148e^-9	2.428e^-5	UPSTREAM skpF INTRON CG43795
2L	9117999	2L_9117999_SNP [dm3] 2L_9117999_SNP [dm6]	C	T	5.179e^-9	2.428e^-5	INTERGENIC
2R	17293320	2R_17293320_SNP [dm3] 2R_21405815_SNP [dm6]	T	G	5.199e^-9	2.428e^-5	INTRON Sdc
2R	17293322	2R_17293322_SNP [dm3] 2R_21405817_SNP [dm6]	C	T	5.199e^-9	2.428e^-5	INTRON Sdc
2R	17293326	2R_17293326_SNP [dm3] 2R_21405821_SNP [dm6]	T	A	5.199e^-9	2.428e^-5	INTRON Sdc
2R	17293327	2R_17293327_SNP [dm3] 2R_21405822_SNP [dm6]	T	G	5.199e^-9	2.428e^-5	INTRON Sdc
2R	17293330	2R_17293330_SNP [dm3] 2R_21405825_SNP [dm6]	A	C	5.199e^-9	2.428e^-5	INTRON Sdc
2R	7033119	2R_7033119_SNP [dm3] 2R_11145614_SNP [dm6]	A	G	5.227e^-9	2.428e^-5	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	5106574	2R_5106574_SNP [dm3] 2R_9219069_SNP [dm6]	G	C	5.231e^-9	2.428e^-5	INTERGENIC
2L	1147512	2L_1147512_SNP [dm3] 2L_1147512_SNP [dm6]	C	T	5.258e^-9	2.428e^-5	UPSTREAM CG4749 DOWNSTREAM MFS3 INTERGENIC
2L	1147533	2L_1147533_SNP [dm3] 2L_1147533_SNP [dm6]	C	T	5.258e^-9	2.428e^-5	UPSTREAM CG4749 DOWNSTREAM MFS3 INTERGENIC
2L	1149384	2L_1149384_SNP [dm3] 2L_1149384_SNP [dm6]	A	G	5.258e^-9	2.428e^-5	UTR_3_PRIME CG4749 DOWNSTREAM Tfb4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13110792	2L_13110792_INS [dm3] 2L_13110792_INS [dm6]	T	TTA	5.260e^-9	2.428e^-5	INTERGENIC
2R	7033127	2R_7033127_SNP [dm3] 2R_11145622_SNP [dm6]	T	C	5.302e^-9	2.442e^-5	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19604749	2R_19604749_SNP [dm3] 2R_23717226_SNP [dm6]	T	G	5.413e^-9	2.487e^-5	INTRON Sesn
X	4706947	X_4706947_SNP [dm3] X_4812914_SNP [dm6]	A	T	5.485e^-9	2.513e^-5	INTERGENIC
3L	11096005	3L_11096005_SNP [dm3] 3L_11102905_SNP [dm6]	C	G	5.597e^-9	2.558e^-5	SYNONYMOUS_CODING Elo68alpha DOWNSTREAM CG32071	TF binding site mE1_TFBS_chinmo
2R	14081009	2R_14081009_SNP [dm3] 2R_18193504_SNP [dm6]	T	C	5.639e^-9	2.559e^-5	UPSTREAM CG33958 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	11537301	X_11537301_INS [dm3] X_11643268_INS [dm6]	A	AACA	5.639e^-9	2.559e^-5	INTRON Ptp10D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9535286	3L_9535286_SNP [dm3] 3L_9542186_SNP [dm6]	A	C	5.640e^-9	2.559e^-5	DOWNSTREAM Ir67a INTERGENIC
2L	644507	2L_644507_SNP [dm3] 2L_644507_SNP [dm6]	T	C	5.808e^-9	2.616e^-5	SYNONYMOUS_CODING ds
2L	645227	2L_645227_SNP [dm3] 2L_645227_SNP [dm6]	G	C	5.808e^-9	2.616e^-5	SYNONYMOUS_CODING ds
2L	645233	2L_645233_SNP [dm3] 2L_645233_SNP [dm6]	T	A	5.808e^-9	2.616e^-5	SYNONYMOUS_CODING ds
3R	17067502	3R_17067502_SNP [dm3] 3R_21241780_SNP [dm6]	A	C	5.822e^-9	2.616e^-5	UPSTREAM CG5892 INTERGENIC	regulatory region REDfly_CRMs
3L	15601324	3L_15601324_SNP [dm3] 3L_15608224_SNP [dm6]	A	G	6.199e^-9	2.779e^-5	UTR_3_PRIME RhoGAP71E DOWNSTREAM CG7650
2L	13121207	2L_13121207_DEL [dm3] 2L_13121207_DEL [dm6]	GG	G	6.282e^-9	2.809e^-5	DOWNSTREAM CG43050 INTERGENIC
2L	12907745	2L_12907745_SNP [dm3] 2L_12907745_SNP [dm6]	G	T	6.312e^-9	2.812e^-5	INTERGENIC
2L	1253628	2L_1253628_SNP [dm3] 2L_1253628_SNP [dm6]	C	T	6.334e^-9	2.812e^-5	INTERGENIC
2L	17609106	2L_17609106_SNP [dm3] 2L_17609106_SNP [dm6]	T	A	6.334e^-9	2.812e^-5	INTERGENIC
3R	7815107	3R_7815107_SNP [dm3] 3R_11989385_SNP [dm6]	G	C	6.541e^-9	2.898e^-5	NON_SYNONYMOUS_CODING mfas INTRON mfas
3L	13858264	3L_13858264_SNP [dm3] 3L_13865164_SNP [dm6]	T	A	6.631e^-9	2.923e^-5	INTRON CG8745	TF binding site mE1_TFBS_inv
3L	16223241	3L_16223241_SNP [dm3] 3L_16230141_SNP [dm6]	C	T	6.631e^-9	2.923e^-5	SYNONYMOUS_CODING CG5027 DOWNSTREAM PDCD-5	TF binding site mE1_TFBS_sens
3L	2975214	3L_2975214_SNP [dm3] 3L_2975214_SNP [dm6]	A	T	6.674e^-9	2.928e^-5	DOWNSTREAM CR44530 INTERGENIC
3L	2977654	3L_2977654_SNP [dm3] 3L_2977654_SNP [dm6]	T	G	6.674e^-9	2.928e^-5	INTERGENIC
3L	4706323	3L_4706323_SNP [dm3] 3L_4706323_SNP [dm6]	C	A	6.726e^-9	2.937e^-5	INTRON RhoGEF64C
3L	4706324	3L_4706324_SNP [dm3] 3L_4706324_SNP [dm6]	T	C	6.726e^-9	2.937e^-5	INTRON RhoGEF64C
2R	13211122	2R_13211122_SNP [dm3] 2R_17323617_SNP [dm6]	A	T	6.755e^-9	2.943e^-5	INTRON mbl
2L	18340000	2L_18340000_SNP [dm3] 2L_18340000_SNP [dm6]	G	A	6.866e^-9	2.952e^-5	INTRON Fas3
2L	1153447	2L_1153447_SNP [dm3] 2L_1153447_SNP [dm6]	G	A	6.893e^-9	2.952e^-5	NON_SYNONYMOUS_CODING capt	TF binding site mE1_TFBS_chinmo
2R	5106573	2R_5106573_SNP [dm3] 2R_9219068_SNP [dm6]	G	T	6.899e^-9	2.952e^-5	INTERGENIC
2R	5107223	2R_5107223_SNP [dm3] 2R_9219718_SNP [dm6]	G	A	6.899e^-9	2.952e^-5	INTERGENIC
2R	5107230	2R_5107230_DEL [dm3] 2R_9219725_DEL [dm6]	AG	A	6.899e^-9	2.952e^-5	INTERGENIC
3L	11233319	3L_11233319_SNP [dm3] 3L_11240219_SNP [dm6]	C	G	6.916e^-9	2.952e^-5	INTERGENIC
2L	12923181	2L_12923181_SNP [dm3] 2L_12923181_SNP [dm6]	G	C	6.933e^-9	2.952e^-5	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
2L	12923184	2L_12923184_SNP [dm3] 2L_12923184_SNP [dm6]	G	T	6.933e^-9	2.952e^-5	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
2L	12923201	2L_12923201_SNP [dm3] 2L_12923201_SNP [dm6]	T	C	6.933e^-9	2.952e^-5	INTRON ACXA
2L	14593489	2L_14593489_SNP [dm3] 2L_14593489_SNP [dm6]	G	A	6.933e^-9	2.952e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14207797	3R_14207797_SNP [dm3] 3R_18382075_SNP [dm6]	T	C	6.991e^-9	2.969e^-5	SYNONYMOUS_CODING CG14309 UPSTREAM CG7675	TF binding site mE1_TFBS_cad
2L	1145316	2L_1145316_SNP [dm3] 2L_1145316_SNP [dm6]	T	G	7.045e^-9	2.985e^-5	INTRON MFS3	TF binding site mE1_TFBS_cad
3R	7936255	3R_7936255_SNP [dm3] 3R_12110533_SNP [dm6]	G	A	7.323e^-9	3.096e^-5	INTRON dpr17	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	17682343	2R_17682343_SNP [dm3] 2R_21794838_SNP [dm6]	G	C	7.753e^-9	3.271e^-5	INTERGENIC
2L	16341755	2L_16341755_SNP [dm3] 2L_16341755_SNP [dm6]	G	A	8.035e^-9	3.377e^-5	SYNONYMOUS_CODING CG44405 DOWNSTREAM chif & 1 other
3L	1913658	3L_1913658_SNP [dm3] 3L_1913658_SNP [dm6]	G	A	8.047e^-9	3.377e^-5	INTERGENIC
3L	15881909	3L_15881909_SNP [dm3] 3L_15888809_SNP [dm6]	C	G	8.060e^-9	3.377e^-5	INTRON pHCl
X	11537345	X_11537345_SNP [dm3] X_11643312_SNP [dm6]	C	T	8.102e^-9	3.387e^-5	INTRON Ptp10D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7754230	3R_7754230_SNP [dm3] 3R_11928508_SNP [dm6]	G	T	8.131e^-9	3.392e^-5	INTRON Cad87A
X	19279153	X_19279153_SNP [dm3] X_19385120_SNP [dm6]	T	C	8.264e^-9	3.440e^-5	INTRON kek5
2L	9118017	2L_9118017_SNP [dm3] 2L_9118017_SNP [dm6]	A	T	8.317e^-9	3.454e^-5	INTERGENIC
2L	14424301	2L_14424301_SNP [dm3] 2L_14424301_SNP [dm6]	A	T	8.366e^-9	3.466e^-5	DOWNSTREAM Cpr35B INTERGENIC	TF binding site mE1_TFBS_cad
X	14802563	X_14802563_SNP [dm3] X_14908530_SNP [dm6]	G	A	8.394e^-9	3.470e^-5	INTRON Flo2 & 1 other	TF binding site mE1_TFBS_cad
2R	19179567	2R_19179567_DEL [dm3] 2R_23292044_DEL [dm6]	CC	C	8.443e^-9	3.483e^-5	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7033143	2R_7033143_SNP [dm3] 2R_11145638_SNP [dm6]	C	T	8.522e^-9	3.508e^-5	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18646758	3L_18646758_SNP [dm3] 3L_18653658_SNP [dm6]	A	T	8.612e^-9	3.529e^-5	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_dl
3L	18646770	3L_18646770_SNP [dm3] 3L_18653670_SNP [dm6]	C	T	8.612e^-9	3.529e^-5	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_dl
2L	7679907	2L_7679907_SNP [dm3] 2L_7679907_SNP [dm6]	T	C	8.714e^-9	3.563e^-5	INTRON Myo28B1
2R	8899595	2R_8899595_SNP [dm3] 2R_13012090_SNP [dm6]	T	C	8.890e^-9	3.627e^-5	INTERGENIC
3L	855926	3L_855926_DEL [dm3] 3L_855926_DEL [dm6]	AAGAC	A	9.004e^-9	3.665e^-5	INTRON dpr20
2R	19604596	2R_19604596_INS [dm3] 2R_23717073_INS [dm6]	A	ATTGA	9.479e^-9	3.850e^-5	INTRON Sesn
2R	16100944	2R_16100944_SNP [dm3] 2R_20213439_SNP [dm6]	A	T	9.507e^-9	3.853e^-5	UPSTREAM CG16894 INTERGENIC
X	20567951	X_20567951_DEL [dm3] X_20696924_DEL [dm6]	GG	G	9.607e^-9	3.885e^-5	UTR_3_PRIME run	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	1145086	2L_1145086_SNP [dm3] 2L_1145086_SNP [dm6]	G	A	9.634e^-9	3.888e^-5	INTRON MFS3	TF binding site mE1_TFBS_cad
X	14942315	X_14942315_SNP [dm3] X_15048282_SNP [dm6]	G	T	9.798e^-9	3.946e^-5	UPSTREAM CG5541 INTRON hiw & 1 other	transposable element FlyBase
3L	3100809	3L_3100809_SNP [dm3] 3L_3100809_SNP [dm6]	A	T	1.011e^-8	4.061e^-5	INTRON Cht7	TF binding site BDTNP1_TFBS_gt
3L	22428762	3L_22428762_SNP [dm3] 3L_22435662_SNP [dm6]	T	C	1.056e^-8	4.233e^-5	INTERGENIC
2R	17092470	2R_17092470_SNP [dm3] 2R_21204965_SNP [dm6]	G	A	1.058e^-8	4.233e^-5	INTRON CG44245 & 1 other
2L	16350672	2L_16350672_SNP [dm3] 2L_16350672_SNP [dm6]	T	A	1.065e^-8	4.252e^-5	UPSTREAM chif INTRON CG42231 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	12981015	3R_12981015_SNP [dm3] 3R_17155293_SNP [dm6]	C	A	1.074e^-8	4.278e^-5	NON_SYNONYMOUS_CODING Mur89F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	6291572	2L_6291572_SNP [dm3] 2L_6291572_SNP [dm6]	G	T	1.084e^-8	4.305e^-5	UTR_3_PRIME Ddr INTRON Ddr	TF binding site mE1_TFBS_cad
2R	15286468	2R_15286468_DEL [dm3] 2R_19398963_DEL [dm6]	GTG	G	1.085e^-8	4.305e^-5	UPSTREAM CR43430 DOWNSTREAM hts INTRON hts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	721573	2R_721573_SNP [dm3] 2R_4834068_SNP [dm6]	C	A	1.092e^-8	4.322e^-5	INTERGENIC	transposable element FlyBase
2L	14290504	2L_14290504_SNP [dm3] 2L_14290504_SNP [dm6]	T	G	1.107e^-8	4.371e^-5	UPSTREAM CR43639 INTRON wb	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15932485	3L_15932485_SNP [dm3] 3L_15939385_SNP [dm6]	T	C	1.152e^-8	4.542e^-5	INTRON Pka-C3
2R	1329238	2R_1329238_SNP [dm3] 2R_5441733_SNP [dm6]	G	C	1.163e^-8	4.574e^-5	INTRON laccase2	transposable element FlyBase
3L	855912	3L_855912_SNP [dm3] 3L_855912_SNP [dm6]	A	C	1.173e^-8	4.606e^-5	INTRON dpr20
3R	14037455	3R_14037455_SNP [dm3] 3R_18211733_SNP [dm6]	C	A	1.204e^-8	4.715e^-5	INTRON CG7985
2R	7298565	2R_7298565_INS [dm3] 2R_11411060_INS [dm6]	A	ATA	1.210e^-8	4.730e^-5	UPSTREAM CG34054 DOWNSTREAM Drip INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	10590609	2L_10590609_SNP [dm3] 2L_10590609_SNP [dm6]	A	C	1.228e^-8	4.788e^-5	INTRON Trim9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3R	7739532	3R_7739532_INS [dm3] 3R_11913810_INS [dm6]	CA	TGT	1.239e^-8	4.822e^-5	INTRON Cad87A
2L	3755353	2L_3755353_SNP [dm3] 2L_3755353_SNP [dm6]	A	G	1.276e^-8	4.955e^-5	DOWNSTREAM CG10019 INTERGENIC
3L	22440822	3L_22440822_SNP [dm3] 3L_22447722_SNP [dm6]	C	T	1.287e^-8	4.987e^-5	INTERGENIC
3L	2615029	3L_2615029_SNP [dm3] 3L_2615029_SNP [dm6]	C	G	1.291e^-8	4.994e^-5	INTRON Pxn	TF binding site mE1_TFBS_chinmo
2R	17942342	2R_17942342_SNP [dm3] 2R_22054837_SNP [dm6]	A	G	1.302e^-8	5.024e^-5	INTERGENIC
3L	22445496	3L_22445496_SNP [dm3] 3L_22452396_SNP [dm6]	G	C	1.329e^-8	5.121e^-5	INTERGENIC
2L	22904177	2L_22904177_SNP [dm3] 2L_23011445_SNP [dm6]	A	T	1.347e^-8	5.179e^-5	INTRON Cht3
2L	21800774	2L_21800774_SNP [dm3] 2L_21800774_SNP [dm6]	C	T	1.391e^-8	5.337e^-5	INTERGENIC
3L	17792952	3L_17792952_SNP [dm3] 3L_17799852_SNP [dm6]	A	G	1.447e^-8	5.539e^-5	INTRON NUCB1
2R	15484457	2R_15484457_SNP [dm3] 2R_19596952_SNP [dm6]	C	G	1.453e^-8	5.550e^-5	DOWNSTREAM CG16716 INTRON sm
3L	15881932	3L_15881932_SNP [dm3] 3L_15888832_SNP [dm6]	C	G	1.503e^-8	5.730e^-5	INTRON pHCl
X	8071473	X_8071473_SNP [dm3] X_8177440_SNP [dm6]	A	T	1.511e^-8	5.748e^-5	UPSTREAM slpr INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3R	13915656	3R_13915656_DEL [dm3] 3R_18089934_DEL [dm6]	ATTGA	A	1.524e^-8	5.785e^-5	UPSTREAM sr INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	19466504	3L_19466504_DEL [dm3] 3L_19473404_DEL [dm6]	CCGAATTT	C	1.544e^-8	5.849e^-5	DOWNSTREAM CG12519 INTERGENIC
2L	8653216	2L_8653216_SNP [dm3] 2L_8653216_SNP [dm6]	C	A	1.570e^-8	5.938e^-5	INTRON Sema-1a
3L	14085710	3L_14085710_SNP [dm3] 3L_14092610_SNP [dm6]	G	A	1.640e^-8	6.188e^-5	INTERGENIC
2R	17942641	2R_17942641_DEL [dm3] 2R_22055136_DEL [dm6]	CATTTCTCCCGCCAC...	C	1.686e^-8	6.340e^-5	INTERGENIC
2L	1155396	2L_1155396_SNP [dm3] 2L_1155396_SNP [dm6]	G	A	1.687e^-8	6.340e^-5	INTRON capt
3L	595392	3L_595392_SNP [dm3] 3L_595392_SNP [dm6]	C	A	1.792e^-8	6.722e^-5	SYNONYMOUS_CODING MED14	TF binding site mE1_TFBS_cad
3L	22440843	3L_22440843_SNP [dm3] 3L_22447743_SNP [dm6]	T	A	1.803e^-8	6.749e^-5	INTERGENIC
3R	9015166	3R_9015166_DEL [dm3] 3R_13189444_DEL [dm6]	AA	A	1.832e^-8	6.832e^-5	UTR_3_PRIME CG14380
2L	16840920	2L_16840920_INS [dm3] 2L_16840920_INS [dm6]	A	AG	1.833e^-8	6.832e^-5	INTRON SclA & 1 other
2R	17118497	2R_17118497_SNP [dm3] 2R_21230992_SNP [dm6]	G	A	1.849e^-8	6.881e^-5	INTRON ASPP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10299485	X_10299485_SNP [dm3] X_10405452_SNP [dm6]	G	C	1.860e^-8	6.908e^-5	INTRON flw
2R	10185376	2R_10185376_SNP [dm3] 2R_14297871_SNP [dm6]	G	C	1.927e^-8	7.123e^-5	INTRON Ih
2R	10185377	2R_10185377_SNP [dm3] 2R_14297872_SNP [dm6]	C	A	1.927e^-8	7.123e^-5	INTRON Ih
3L	14566676	3L_14566676_SNP [dm3] 3L_14573576_SNP [dm6]	T	A	1.930e^-8	7.123e^-5	INTERGENIC
X	19593344	X_19593344_INS [dm3] X_19699311_INS [dm6]	A	ACAGAA	1.936e^-8	7.133e^-5	UTR_3_PRIME Cdc42 DOWNSTREAM CG14231 & 1 other
2R	11915790	2R_11915790_DEL [dm3] 2R_16028285_DEL [dm6]	GGCGG	CTTT	2.010e^-8	7.388e^-5	UPSTREAM CG8401 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11303009	3L_11303009_SNP [dm3] 3L_11309909_SNP [dm6]	A	G	2.017e^-8	7.388e^-5	INTERGENIC
3L	11303021	3L_11303021_SNP [dm3] 3L_11309921_SNP [dm6]	A	C	2.017e^-8	7.388e^-5	INTERGENIC
3L	16330371	3L_16330371_SNP [dm3] 3L_16337271_SNP [dm6]	G	A	2.057e^-8	7.518e^-5	INTERGENIC
2L	14322181	2L_14322181_SNP [dm3] 2L_14322181_SNP [dm6]	G	A	2.088e^-8	7.617e^-5	NON_SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
3R	21000221	3R_21000221_INS [dm3] 3R_25174499_INS [dm6]	C	CGGCAC	2.103e^-8	7.656e^-5	INTRON lobo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	20685376	3L_20685376_SNP [dm3] 3L_20692276_SNP [dm6]	A	G	2.132e^-8	7.749e^-5	DOWNSTREAM kni INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16496322	2L_16496322_SNP [dm3] 2L_16496322_SNP [dm6]	C	G	2.176e^-8	7.875e^-5	UPSTREAM Tpr2 INTRON Tpr2	TF binding site mE1_TFBS_bab1
2L	16496323	2L_16496323_INS [dm3] 2L_16496323_INS [dm6]	A	AGGAAGAGTTTGAGCATGCT...	2.176e^-8	7.875e^-5	UPSTREAM Tpr2 INTRON Tpr2	TF binding site mE1_TFBS_bab1
2L	11123623	2L_11123623_SNP [dm3] 2L_11123623_SNP [dm6]	C	T	2.209e^-8	7.979e^-5	UPSTREAM Nup160 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10860319	X_10860319_SNP [dm3] X_10966286_SNP [dm6]	G	A	2.226e^-8	8.027e^-5	SYNONYMOUS_CODING C901
3L	22451823	3L_22451823_SNP [dm3] 3L_22458723_SNP [dm6]	G	A	2.270e^-8	8.137e^-5	DOWNSTREAM laza INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	22451867	3L_22451867_SNP [dm3] 3L_22458767_SNP [dm6]	C	A	2.270e^-8	8.137e^-5	DOWNSTREAM laza INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	1906681	2L_1906681_SNP [dm3] 2L_1906681_SNP [dm6]	A	C	2.270e^-8	8.137e^-5	INTRON CG7337
X	3722007	X_3722007_SNP [dm3] X_3827974_SNP [dm6]	G	A	2.307e^-8	8.255e^-5	UPSTREAM CG2901 DOWNSTREAM tRNA:P:3E INTRON ec
2L	9540225	2L_9540225_SNP [dm3] 2L_9540225_SNP [dm6]	A	G	2.321e^-8	8.286e^-5	UPSTREAM CG17855 DOWNSTREAM Oatp30B INTERGENIC	TF binding site mE1_TFBS_bab1
3L	18212188	3L_18212188_INS [dm3] 3L_18219088_INS [dm6]	A	AGAA	2.349e^-8	8.372e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	10352316	2R_10352316_SNP [dm3] 2R_14464811_SNP [dm6]	C	T	2.417e^-8	8.599e^-5	SYNONYMOUS_CODING Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	7033158	2R_7033158_SNP [dm3] 2R_11145653_SNP [dm6]	T	G	2.447e^-8	8.688e^-5	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4529197	3L_4529197_SNP [dm3] 3L_4529197_SNP [dm6]	C	A	2.486e^-8	8.810e^-5	INTRON Tie
2L	16947476	2L_16947476_SNP [dm3] 2L_16947476_SNP [dm6]	A	G	2.491e^-8	8.810e^-5	DOWNSTREAM CR44393 INTERGENIC
3L	15912055	3L_15912055_SNP [dm3] 3L_15918955_SNP [dm6]	G	T	2.535e^-8	8.948e^-5	INTRON sff
2R	19627064	2R_19627064_SNP [dm3] 2R_23739541_SNP [dm6]	T	C	2.644e^-8	9.317e^-5	INTRON egl
2L	14395986	2L_14395986_SNP [dm3] 2L_14395986_SNP [dm6]	C	G	2.659e^-8	9.352e^-5	INTRON elB
X	20329316	X_20329316_SNP [dm3] X_20458289_SNP [dm6]	A	C	2.677e^-8	9.389e^-5	INTRON CG32506	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	22641033	3L_22641033_SNP [dm3] 3L_22647933_SNP [dm6]	G	C	2.690e^-8	9.389e^-5	NON_SYNONYMOUS_CODING CG33769 UPSTREAM CG33770 DOWNSTREAM CG33767 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22641129	3L_22641129_SNP [dm3] 3L_22648029_SNP [dm6]	T	C	2.690e^-8	9.389e^-5	UPSTREAM CG33770 DOWNSTREAM CG33768 INTRON CG33769	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22650946	3L_22650946_SNP [dm3] 3L_22657846_SNP [dm6]	G	T	2.690e^-8	9.389e^-5	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	10243280	3R_10243280_SNP [dm3] 3R_14417558_SNP [dm6]	A	T	2.701e^-8	9.391e^-5	INTRON cv-c
X	10856767	X_10856767_SNP [dm3] X_10962734_SNP [dm6]	G	A	2.701e^-8	9.391e^-5	SYNONYMOUS_CODING Myo10A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17902021	3L_17902021_SNP [dm3] 3L_17908921_SNP [dm6]	C	T	2.762e^-8	9.585e^-5	SYNONYMOUS_CODING CG14353 DOWNSTREAM CG5290	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	22644488	3L_22644488_SNP [dm3] 3L_22651388_SNP [dm6]	C	T	2.908e^-8	1.007e^-4	DOWNSTREAM CG33772 INTERGENIC	TF binding site mE1_TFBS_inv
2R	14620688	2R_14620688_DEL [dm3] 2R_18733183_DEL [dm6]	GTGGCAG	G	2.930e^-8	1.012e^-4	INTRON Hs3st-A
2L	10572151	2L_10572151_SNP [dm3] 2L_10572151_SNP [dm6]	C	T	2.931e^-8	1.012e^-4	INTRON Trim9
3L	12058814	3L_12058814_INS [dm3] 3L_12065714_INS [dm6]	A	ACTATAAGATACA...	2.971e^-8	1.022e^-4	UPSTREAM rols INTERGENIC
3L	12058819	3L_12058819_SNP [dm3] 3L_12065719_SNP [dm6]	T	A	2.971e^-8	1.022e^-4	UPSTREAM rols INTERGENIC
X	10859600	X_10859600_SNP [dm3] X_10965567_SNP [dm6]	T	C	2.993e^-8	1.027e^-4	INTRON C901	TF binding site mE1_TFBS_chinmo
2L	1817169	2L_1817169_SNP [dm3] 2L_1817169_SNP [dm6]	A	T	3.103e^-8	1.063e^-4	INTERGENIC
3L	13953748	3L_13953748_SNP [dm3] 3L_13960648_SNP [dm6]	C	T	3.113e^-8	1.064e^-4	SYNONYMOUS_CODING CG32137
3R	20007943	3R_20007943_SNP [dm3] 3R_24182221_SNP [dm6]	G	C	3.145e^-8	1.074e^-4	DOWNSTREAM CG13606 INTRON CG13606
2L	13135122	2L_13135122_INS [dm3] 2L_13135122_INS [dm6]	T	TGT	3.154e^-8	1.075e^-4	DOWNSTREAM CG5122 INTERGENIC
2L	13935651	2L_13935651_SNP [dm3] 2L_13935651_SNP [dm6]	T	A	3.208e^-8	1.089e^-4	UPSTREAM CG16885 INTRON Ance-3
2L	13935656	2L_13935656_SNP [dm3] 2L_13935656_SNP [dm6]	A	C	3.208e^-8	1.089e^-4	UPSTREAM CG16885 INTRON Ance-3
2R	6442622	2R_6442622_SNP [dm3] 2R_10555117_SNP [dm6]	T	A	3.228e^-8	1.094e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2R	17868827	2R_17868827_SNP [dm3] 2R_21981322_SNP [dm6]	C	T	3.262e^-8	1.104e^-4	DOWNSTREAM Gr58a INTERGENIC
2L	16341494	2L_16341494_SNP [dm3] 2L_16341494_SNP [dm6]	A	C	3.283e^-8	1.108e^-4	NON_SYNONYMOUS_CODING CG44405 DOWNSTREAM chif & 1 other	TF binding site mE1_TFBS_sens
3L	13900612	3L_13900612_SNP [dm3] 3L_13907512_SNP [dm6]	C	A	3.313e^-8	1.116e^-4	UTR_3_PRIME Rgl
3L	14563858	3L_14563858_INS [dm3] 3L_14570758_INS [dm6]	G	TA	3.321e^-8	1.116e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14396102	2L_14396102_SNP [dm3] 2L_14396102_SNP [dm6]	C	T	3.330e^-8	1.116e^-4	INTRON elB
2R	717837	2R_717837_SNP [dm3] 2R_4830332_SNP [dm6]	G	A	3.335e^-8	1.116e^-4	UTR_3_PRIME CG14464 DOWNSTREAM CG14464
X	6975816	X_6975816_SNP [dm3] X_7081783_SNP [dm6]	T	A	3.336e^-8	1.116e^-4	INTRON Sxl
2L	12776252	2L_12776252_SNP [dm3] 2L_12776252_SNP [dm6]	G	C	3.389e^-8	1.132e^-4	INTERGENIC
2L	14391209	2L_14391209_SNP [dm3] 2L_14391209_SNP [dm6]	G	A	3.402e^-8	1.134e^-4	SYNONYMOUS_CODING elB	TF binding site mE1_TFBS_chinmo
3R	4366809	3R_4366809_DEL [dm3] 3R_8541087_DEL [dm6]	AACCAAGTA	A	3.408e^-8	1.134e^-4	INTERGENIC
3L	22643737	3L_22643737_SNP [dm3] 3L_22650637_SNP [dm6]	A	G	3.504e^-8	1.162e^-4	DOWNSTREAM CG33771 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22644157	3L_22644157_SNP [dm3] 3L_22651057_SNP [dm6]	G	T	3.504e^-8	1.162e^-4	DOWNSTREAM CG33772 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	16234998	3L_16234998_SNP [dm3] 3L_16241898_SNP [dm6]	G	T	3.510e^-8	1.162e^-4	INTERGENIC
X	10858443	X_10858443_SNP [dm3] X_10964410_SNP [dm6]	T	C	3.636e^-8	1.201e^-4	NON_SYNONYMOUS_CODING C901 DOWNSTREAM Myo10A	TF binding site mE1_TFBS_chinmo
2L	13334128	2L_13334128_SNP [dm3] 2L_13334128_SNP [dm6]	A	G	3.648e^-8	1.201e^-4	INTERGENIC
2R	16564611	2R_16564611_SNP [dm3] 2R_20677106_SNP [dm6]	T	C	3.648e^-8	1.201e^-4	INTERGENIC
3L	11174708	3L_11174708_SNP [dm3] 3L_11181608_SNP [dm6]	G	T	3.722e^-8	1.223e^-4	INTRON GlcAT-P
3L	22371825	3L_22371825_SNP [dm3] 3L_22378725_SNP [dm6]	T	A	3.742e^-8	1.228e^-4	INTRON Ten-m
2L	12776121	2L_12776121_SNP [dm3] 2L_12776121_SNP [dm6]	A	G	3.757e^-8	1.231e^-4	INTERGENIC
2R	17778094	2R_17778094_SNP [dm3] 2R_21890589_SNP [dm6]	T	C	3.854e^-8	1.260e^-4	INTRON Fili	TF binding site BDTNP1_TFBS_twi
2L	11122621	2L_11122621_SNP [dm3] 2L_11122621_SNP [dm6]	G	T	3.899e^-8	1.273e^-4	UTR_3_PRIME Csl4 UPSTREAM CG14921	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10941694	2L_10941694_SNP [dm3] 2L_10941694_SNP [dm6]	T	A	3.913e^-8	1.275e^-4	DOWNSTREAM CR44492 INTRON dpr2
2L	16051181	2L_16051181_SNP [dm3] 2L_16051181_SNP [dm6]	A	T	3.929e^-8	1.278e^-4	INTRON beat-Ia	TF binding site mE1_TFBS_cad
3L	12058806	3L_12058806_SNP [dm3] 3L_12065706_SNP [dm6]	T	A	3.980e^-8	1.289e^-4	UPSTREAM rols INTERGENIC
3L	12058816	3L_12058816_SNP [dm3] 3L_12065716_SNP [dm6]	A	T	3.980e^-8	1.289e^-4	UPSTREAM rols INTERGENIC
2R	16363318	2R_16363318_SNP [dm3] 2R_20475813_SNP [dm6]	T	A	3.984e^-8	1.289e^-4	INTRON CG12484
3L	17771322	3L_17771322_SNP [dm3] 3L_17778222_SNP [dm6]	T	C	3.990e^-8	1.289e^-4	INTERGENIC
3L	17771298	3L_17771298_SNP [dm3] 3L_17778198_SNP [dm6]	G	T	4.058e^-8	1.308e^-4	INTERGENIC
2L	22898894	2L_22898894_SNP [dm3] 2L_23006162_SNP [dm6]	C	T	4.135e^-8	1.326e^-4	INTRON Cht3
2L	22898944	2L_22898944_SNP [dm3] 2L_23006212_SNP [dm6]	A	G	4.135e^-8	1.326e^-4	INTRON Cht3
2L	22905374	2L_22905374_SNP [dm3] 2L_23012642_SNP [dm6]	C	A	4.135e^-8	1.326e^-4	NON_SYNONYMOUS_CODING Cht3
2L	4165487	2L_4165487_SNP [dm3] 2L_4165487_SNP [dm6]	A	G	4.241e^-8	1.356e^-4	SYNONYMOUS_CODING Or24a
2L	4165493	2L_4165493_SNP [dm3] 2L_4165493_SNP [dm6]	G	A	4.241e^-8	1.356e^-4	SYNONYMOUS_CODING Or24a
2R	10387719	2R_10387719_SNP [dm3] 2R_14500214_SNP [dm6]	A	T	4.422e^-8	1.411e^-4	SYNONYMOUS_CODING Cpsf160	TF binding site mE1_TFBS_sens
2L	1139117	2L_1139117_SNP [dm3] 2L_1139117_SNP [dm6]	A	T	4.441e^-8	1.415e^-4	SPLICE_SITE_REGION CG4577 INTRON CG4577	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2665766	X_2665766_SNP [dm3] X_2771733_SNP [dm6]	G	A	4.483e^-8	1.426e^-4	INTRON kirre
2R	12972863	2R_12972863_SNP [dm3] 2R_17085358_SNP [dm6]	A	C	4.522e^-8	1.436e^-4	INTRON CG30460
2L	12453448	2L_12453448_SNP [dm3] 2L_12453448_SNP [dm6]	C	A	4.639e^-8	1.466e^-4	UPSTREAM CR17024 & 1 other INTERGENIC
3L	1176423	3L_1176423_SNP [dm3] 3L_1176423_SNP [dm6]	C	G	4.639e^-8	1.466e^-4	INTRON bab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14620406	2R_14620406_SNP [dm3] 2R_18732901_SNP [dm6]	C	G	4.643e^-8	1.466e^-4	INTRON Hs3st-A
3R	9920998	3R_9920998_SNP [dm3] 3R_14095276_SNP [dm6]	C	G	4.678e^-8	1.475e^-4	INTRON CCHa1
2L	15402517	2L_15402517_DEL [dm3] 2L_15402517_DEL [dm6]	TTTGTGTTTAT...	T	4.730e^-8	1.489e^-4	INTERGENIC
3L	17563207	3L_17563207_SNP [dm3] 3L_17570107_SNP [dm6]	C	G	4.759e^-8	1.493e^-4	INTRON Eip74EF
3L	17563362	3L_17563362_SNP [dm3] 3L_17570262_SNP [dm6]	C	T	4.759e^-8	1.493e^-4	INTRON Eip74EF	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	11198312	2L_11198312_SNP [dm3] 2L_11198312_SNP [dm6]	A	T	4.800e^-8	1.503e^-4	INTRON Ca-beta
2L	9199454	2L_9199454_SNP [dm3] 2L_9199454_SNP [dm6]	A	G	4.811e^-8	1.504e^-4	INTRON tai
X	8471345	X_8471345_SNP [dm3] X_8577312_SNP [dm6]	C	T	4.901e^-8	1.527e^-4	INTRON CG12065
X	8471356	X_8471356_SNP [dm3] X_8577323_SNP [dm6]	A	T	4.901e^-8	1.527e^-4	INTRON CG12065
3L	4015088	3L_4015088_SNP [dm3] 3L_4015088_SNP [dm6]	T	A	4.908e^-8	1.527e^-4	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	12776115	2L_12776115_SNP [dm3] 2L_12776115_SNP [dm6]	T	G	4.929e^-8	1.531e^-4	INTERGENIC
3L	3942608	3L_3942608_SNP [dm3] 3L_3942608_SNP [dm6]	C	T	4.985e^-8	1.545e^-4	UPSTREAM CG14982 & 1 other INTERGENIC
3L	12921228	3L_12921228_SNP [dm3] 3L_12928128_SNP [dm6]	T	C	4.991e^-8	1.545e^-4	INTERGENIC
2L	22896207	2L_22896207_SNP [dm3] 2L_23003475_SNP [dm6]	T	G	5.146e^-8	1.590e^-4	INTRON Cht3
2L	14968124	2L_14968124_SNP [dm3] 2L_14968124_SNP [dm6]	C	T	5.173e^-8	1.596e^-4	INTRON CG42313
2L	8323686	2L_8323686_SNP [dm3] 2L_8323686_SNP [dm6]	C	T	5.211e^-8	1.605e^-4	INTRON CG7781
3L	22269832	3L_22269832_SNP [dm3] 3L_22276732_SNP [dm6]	G	A	5.334e^-8	1.637e^-4	UPSTREAM srpk79D INTRON srpk79D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22277059	3L_22277059_SNP [dm3] 3L_22283959_SNP [dm6]	G	A	5.334e^-8	1.637e^-4	UTR_3_PRIME srpk79D DOWNSTREAM Hem & 1 other
3R	12204962	3R_12204962_SNP [dm3] 3R_16379240_SNP [dm6]	G	T	5.419e^-8	1.658e^-4	INTRON ss
2L	641937	2L_641937_SNP [dm3] 2L_641937_SNP [dm6]	T	C	5.425e^-8	1.658e^-4	SYNONYMOUS_CODING ds	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15287068	2R_15287068_SNP [dm3] 2R_19399563_SNP [dm6]	G	A	5.428e^-8	1.658e^-4	UTR_3_PRIME hts UPSTREAM CR43430 INTRON hts
2L	11192164	2L_11192164_SNP [dm3] 2L_11192164_SNP [dm6]	A	G	5.558e^-8	1.694e^-4	INTRON Ca-beta
2L	7273996	2L_7273996_SNP [dm3] 2L_7273996_SNP [dm6]	C	A	5.568e^-8	1.694e^-4	INTRON Wnt4
3R	7898768	3R_7898768_SNP [dm3] 3R_12073046_SNP [dm6]	G	T	5.574e^-8	1.694e^-4	INTRON CG14741
2L	4165367	2L_4165367_SNP [dm3] 2L_4165367_SNP [dm6]	A	G	5.716e^-8	1.735e^-4	SYNONYMOUS_CODING Or24a
2L	22852962	2L_22852962_SNP [dm3] 2L_22960230_SNP [dm6]	C	T	5.746e^-8	1.741e^-4	INTERGENIC
2L	3816990	2L_3816990_SNP [dm3] 2L_3816990_SNP [dm6]	A	G	5.757e^-8	1.742e^-4	UPSTREAM CR44077 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	18194884	3R_18194884_SNP [dm3] 3R_22369162_SNP [dm6]	C	G	5.864e^-8	1.771e^-4	UPSTREAM PyK INTRON PyK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3997568	2L_3997568_DEL [dm3] 2L_3997568_DEL [dm6]	TGTC	G	5.904e^-8	1.780e^-4	INTERGENIC
2L	14396298	2L_14396298_SNP [dm3] 2L_14396298_SNP [dm6]	C	T	5.999e^-8	1.806e^-4	INTRON elB
3L	6748801	3L_6748801_SNP [dm3] 3L_6755701_SNP [dm6]	C	A	6.024e^-8	1.810e^-4	NON_SYNONYMOUS_CODING CG10103 DOWNSTREAM CG32392	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	22277021	3L_22277021_DEL [dm3] 3L_22283921_DEL [dm6]	CTTATCATTTAAC...	C	6.173e^-8	1.849e^-4	UTR_3_PRIME srpk79D DOWNSTREAM Hem & 1 other
3L	22277342	3L_22277342_SNP [dm3] 3L_22284242_SNP [dm6]	A	G	6.173e^-8	1.849e^-4	UTR_3_PRIME srpk79D DOWNSTREAM Hem & 1 other
2L	12776114	2L_12776114_SNP [dm3] 2L_12776114_SNP [dm6]	T	A	6.292e^-8	1.882e^-4	INTERGENIC
X	6975779	X_6975779_SNP [dm3] X_7081746_SNP [dm6]	T	C	6.426e^-8	1.919e^-4	INTRON Sxl	TF binding site mE1_TFBS_zfh1
X	12404511	X_12404511_SNP [dm3] X_12510478_SNP [dm6]	T	C	6.498e^-8	1.932e^-4	INTRON CG2556
3L	597266	3L_597266_SNP [dm3] 3L_597266_SNP [dm6]	A	G	6.500e^-8	1.932e^-4	SYNONYMOUS_CODING MED14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1621633	3L_1621633_SNP [dm3] 3L_1621633_SNP [dm6]	T	G	6.501e^-8	1.932e^-4	SYNONYMOUS_CODING ABCB7	TF binding site mE1_TFBS_cad
2L	13144173	2L_13144173_SNP [dm3] 2L_13144173_SNP [dm6]	T	C	6.575e^-8	1.951e^-4	UPSTREAM CG16978 INTERGENIC
3L	17772359	3L_17772359_SNP [dm3] 3L_17779259_SNP [dm6]	T	G	6.644e^-8	1.966e^-4	INTERGENIC
X	6643129	X_6643129_SNP [dm3] X_6749096_SNP [dm6]	A	T	6.648e^-8	1.966e^-4	INTRON CG14439
3L	3942607	3L_3942607_SNP [dm3] 3L_3942607_SNP [dm6]	T	G	6.710e^-8	1.981e^-4	UPSTREAM CG14982 & 1 other INTERGENIC
2L	22879492	2L_22879492_INS [dm3] 2L_22986760_INS [dm6]	T	TTGTCGTTTCTATACCTATA...	6.738e^-8	1.987e^-4	INTRON cta
3L	22253514	3L_22253514_SNP [dm3] 3L_22260414_SNP [dm6]	A	C	6.794e^-8	1.990e^-4	INTRON Rich
3L	22256500	3L_22256500_SNP [dm3] 3L_22263400_SNP [dm6]	C	T	6.794e^-8	1.990e^-4	UTR_5_PRIME Ddx1 UPSTREAM Rich	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	22281243	3L_22281243_SNP [dm3] 3L_22288143_SNP [dm6]	C	A	6.794e^-8	1.990e^-4	UTR_5_PRIME Hem UPSTREAM Aats-ile	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	22284536	3L_22284536_SNP [dm3] 3L_22291436_SNP [dm6]	G	A	6.794e^-8	1.990e^-4	SYNONYMOUS_CODING Aats-ile
3L	22268914	3L_22268914_SNP [dm3] 3L_22275814_SNP [dm6]	T	A	6.809e^-8	1.992e^-4	INTRON srpk79D
X	14943404	X_14943404_SNP [dm3] X_15049371_SNP [dm6]	C	T	6.824e^-8	1.993e^-4	INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
2L	3347583	2L_3347583_DEL [dm3] 2L_3347583_DEL [dm6]	TTCGTG	T	6.975e^-8	2.034e^-4	INTRON E23
2L	12928595	2L_12928595_SNP [dm3] 2L_12928595_SNP [dm6]	T	C	7.105e^-8	2.069e^-4	INTRON ACXE
3R	18723442	3R_18723442_DEL [dm3] 3R_22897720_DEL [dm6]	GCGA	AG	7.230e^-8	2.102e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11192334	2L_11192334_SNP [dm3] 2L_11192334_SNP [dm6]	T	A	7.275e^-8	2.111e^-4	INTRON Ca-beta
2L	641613	2L_641613_SNP [dm3] 2L_641613_SNP [dm6]	T	G	7.309e^-8	2.118e^-4	SYNONYMOUS_CODING ds	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8859467	3L_8859467_SNP [dm3] 3L_8866367_SNP [dm6]	A	G	7.355e^-8	2.128e^-4	INTRON dally
3R	19946568	3R_19946568_SNP [dm3] 3R_24120846_SNP [dm6]	C	T	7.378e^-8	2.131e^-4	INTRON Rootletin	TF binding site mE1_TFBS_chinmo
2R	6282846	2R_6282846_SNP [dm3] 2R_10395341_SNP [dm6]	C	T	7.406e^-8	2.136e^-4	UPSTREAM CG42732 INTRON CG42732
3L	22333941	3L_22333941_SNP [dm3] 3L_22340841_SNP [dm6]	G	A	7.574e^-8	2.178e^-4	INTRON Ten-m
3L	22370906	3L_22370906_SNP [dm3] 3L_22377806_SNP [dm6]	C	A	7.574e^-8	2.178e^-4	INTRON Ten-m
2L	10946685	2L_10946685_SNP [dm3] 2L_10946685_SNP [dm6]	G	C	7.750e^-8	2.218e^-4	INTRON dpr2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3757985	2L_3757985_SNP [dm3] 2L_3757985_SNP [dm6]	C	A	7.750e^-8	2.218e^-4	INTRON CG43707
2R	2335668	2R_2335668_SNP [dm3] 2R_6448163_SNP [dm6]	T	C	7.750e^-8	2.218e^-4	INTERGENIC
3L	22275048	3L_22275048_SNP [dm3] 3L_22281948_SNP [dm6]	C	T	7.854e^-8	2.244e^-4	INTRON srpk79D
2L	12079358	2L_12079358_SNP [dm3] 2L_12079358_SNP [dm6]	G	A	7.927e^-8	2.262e^-4	UPSTREAM CR44591 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	15973668	2L_15973668_SNP [dm3] 2L_15973668_SNP [dm6]	A	G	7.972e^-8	2.271e^-4	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	12414829	2L_12414829_SNP [dm3] 2L_12414829_SNP [dm6]	T	A	8.102e^-8	2.305e^-4	INTRON vir-1
X	19433611	X_19433611_SNP [dm3] X_19539578_SNP [dm6]	T	G	8.174e^-8	2.322e^-4	INTRON CG32532
2L	7526992	2L_7526992_SNP [dm3] 2L_7526992_SNP [dm6]	G	A	8.235e^-8	2.336e^-4	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6047992	2R_6047992_DEL [dm3] 2R_10160487_DEL [dm6]	CC	T	8.333e^-8	2.357e^-4	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2813706	3L_2813706_SNP [dm3] 3L_2813706_SNP [dm6]	A	G	8.338e^-8	2.357e^-4	INTRON CG43444
3L	22276202	3L_22276202_SNP [dm3] 3L_22283102_SNP [dm6]	A	G	8.418e^-8	2.377e^-4	UTR_3_PRIME srpk79D
X	4644700	X_4644700_SNP [dm3] X_4750667_SNP [dm6]	C	T	8.536e^-8	2.406e^-4	INTERGENIC
3R	16026011	3R_16026011_SNP [dm3] 3R_20200289_SNP [dm6]	A	C	8.587e^-8	2.417e^-4	INTERGENIC
2L	16991622	2L_16991622_SNP [dm3] 2L_16991622_SNP [dm6]	G	T	8.727e^-8	2.453e^-4	INTRON beat-IIIb
3L	22245154	3L_22245154_SNP [dm3] 3L_22252054_SNP [dm6]	G	T	8.749e^-8	2.455e^-4	INTERGENIC
3R	20954176	3R_20954176_SNP [dm3] 3R_25128454_SNP [dm6]	T	C	8.782e^-8	2.461e^-4	SYNONYMOUS_CODING Clbn
2L	13683857	2L_13683857_SNP [dm3] 2L_13683857_SNP [dm6]	T	C	8.835e^-8	2.472e^-4	INTRON CG31814
2L	14973398	2L_14973398_SNP [dm3] 2L_14973398_SNP [dm6]	G	A	8.994e^-8	2.512e^-4	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	7352108	2R_7352108_SNP [dm3] 2R_11464603_SNP [dm6]	G	C	9.138e^-8	2.545e^-4	UTR_3_PRIME E_Pc_ DOWNSTREAM E_Pc_
3R	9910711	3R_9910711_SNP [dm3] 3R_14084989_SNP [dm6]	C	T	9.157e^-8	2.545e^-4	INTRON foxo
X	5436923	X_5436923_SNP [dm3] X_5542890_SNP [dm6]	G	T	9.157e^-8	2.545e^-4	INTRON Vsx2
2L	4722389	2L_4722389_INS [dm3] 2L_4722389_INS [dm6]	A	ATACT	9.167e^-8	2.545e^-4	UTR_3_PRIME CG34351
3L	22212997	3L_22212997_SNP [dm3] 3L_22219897_SNP [dm6]	C	G	9.231e^-8	2.556e^-4	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22287900	3L_22287900_SNP [dm3] 3L_22294800_SNP [dm6]	G	A	9.231e^-8	2.556e^-4	UTR_3_PRIME Ten-m
2L	22864343	2L_22864343_SNP [dm3] 2L_22971611_SNP [dm6]	C	A	9.256e^-8	2.559e^-4	INTERGENIC
2L	8001621	2L_8001621_INS [dm3] 2L_8001621_INS [dm6]	C	CTCC	9.394e^-8	2.582e^-4	INTRON Wwox
3R	12354629	3R_12354629_SNP [dm3] 3R_16528907_SNP [dm6]	C	A	9.410e^-8	2.582e^-4	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12354732	3R_12354732_SNP [dm3] 3R_16529010_SNP [dm6]	G	A	9.410e^-8	2.582e^-4	INTRON CG42342	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12354792	3R_12354792_INS [dm3] 3R_16529070_INS [dm6]	C	CGAG	9.410e^-8	2.582e^-4	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12354795	3R_12354795_INS [dm3] 3R_16529073_INS [dm6]	T	TATACAAG	9.410e^-8	2.582e^-4	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15770725	3R_15770725_SNP [dm3] 3R_19945003_SNP [dm6]	A	T	9.470e^-8	2.595e^-4	INTRON Hs6st
2R	17926871	2R_17926871_SNP [dm3] 2R_22039366_SNP [dm6]	A	G	9.550e^-8	2.611e^-4	START_GAINED CG34370 UTR_5_PRIME CG34370 INTRON CG34370
2L	20011837	2L_20011837_DEL [dm3] 2L_20011837_DEL [dm6]	ACCGTCGA	TG	9.557e^-8	2.611e^-4	INTRON CG43861
3R	17048444	3R_17048444_SNP [dm3] 3R_21222722_SNP [dm6]	C	T	9.570e^-8	2.611e^-4	UTR_3_PRIME Oga UPSTREAM Nelf-A DOWNSTREAM CG3337 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_sens
2R	14478061	2R_14478061_SNP [dm3] 2R_18590556_SNP [dm6]	C	A	9.586e^-8	2.611e^-4	INTRON GEFmeso
3L	9868244	3L_9868244_SNP [dm3] 3L_9875144_SNP [dm6]	T	G	9.713e^-8	2.642e^-4	UPSTREAM CR45406 INTERGENIC
3L	3939192	3L_3939192_SNP [dm3] 3L_3939192_SNP [dm6]	G	A	9.730e^-8	2.643e^-4	INTRON CG12766	TF binding site mE1_TFBS_sens
2R	17866839	2R_17866839_SNP [dm3] 2R_21979334_SNP [dm6]	T	C	9.787e^-8	2.654e^-4	SYNONYMOUS_CODING Gr58b UPSTREAM Gr58a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17564274	3L_17564274_SNP [dm3] 3L_17571174_SNP [dm6]	T	G	9.840e^-8	2.665e^-4	INTRON Eip74EF
2L	13144180	2L_13144180_SNP [dm3] 2L_13144180_SNP [dm6]	T	C	9.908e^-8	2.679e^-4	UPSTREAM CG16978 INTERGENIC
2L	11292882	2L_11292882_SNP [dm3] 2L_11292882_SNP [dm6]	A	G	9.950e^-8	2.687e^-4	INTERGENIC
3L	15673523	3L_15673523_SNP [dm3] 3L_15680423_SNP [dm6]	C	T	1.031e^-7	2.779e^-4	NON_SYNONYMOUS_CODING CG7304	TF binding site mE1_TFBS_HSA
3L	18879614	3L_18879614_SNP [dm3] 3L_18886514_SNP [dm6]	T	C	1.033e^-7	2.782e^-4	INTRON CG3961
2R	14044853	2R_14044853_DEL [dm3] 2R_18157348_DEL [dm6]	ATGCG	A	1.037e^-7	2.788e^-4	UPSTREAM lolal & 1 other INTRON lolal	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3R	7606423	3R_7606423_SNP [dm3] 3R_11780701_SNP [dm6]	T	A	1.080e^-7	2.899e^-4	DOWNSTREAM CG17360 EXON CR45595	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
3L	11389243	3L_11389243_INS [dm3] 3L_11396143_INS [dm6]	A	AACAAA	1.086e^-7	2.911e^-4	DOWNSTREAM CG11726 INTERGENIC
3R	17082061	3R_17082061_SNP [dm3] 3R_21256339_SNP [dm6]	C	G	1.098e^-7	2.936e^-4	INTRON ETHR
2L	12952305	2L_12952305_SNP [dm3] 2L_12952305_SNP [dm6]	G	T	1.098e^-7	2.936e^-4	INTERGENIC
3L	21854095	3L_21854095_SNP [dm3] 3L_21860995_SNP [dm6]	C	T	1.110e^-7	2.963e^-4	INTRON mub	TF binding site mE1_TFBS_inv
2L	4249850	2L_4249850_SNP [dm3] 2L_4249850_SNP [dm6]	C	T	1.155e^-7	3.079e^-4	UPSTREAM CR44059 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	3030873	3R_3030873_SNP [dm3] 3R_7205151_SNP [dm6]	T	C	1.166e^-7	3.100e^-4	INTERGENIC
2R	16446506	2R_16446506_SNP [dm3] 2R_20559001_SNP [dm6]	G	A	1.168e^-7	3.100e^-4	NON_SYNONYMOUS_CODING lms DOWNSTREAM Mgat1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6975987	X_6975987_SNP [dm3] X_7081954_SNP [dm6]	T	G	1.169e^-7	3.100e^-4	DOWNSTREAM Sxl INTRON Sxl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20955136	3R_20955136_SNP [dm3] 3R_25129414_SNP [dm6]	G	A	1.170e^-7	3.100e^-4	NON_SYNONYMOUS_CODING Clbn
3R	17045478	3R_17045478_SNP [dm3] 3R_21219756_SNP [dm6]	C	T	1.195e^-7	3.159e^-4	SYNONYMOUS_CODING Oga UPSTREAM CG3353	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	17046018	3R_17046018_DEL [dm3] 3R_21220296_DEL [dm6]	GAAAAG	G	1.195e^-7	3.159e^-4	INTRON Oga	TF binding site mE1_TFBS_cad
2R	13510398	2R_13510398_DEL [dm3] 2R_17622893_DEL [dm6]	TT	T	1.198e^-7	3.161e^-4	INTRON CG10936
X	13856770	X_13856770_SNP [dm3] X_13962737_SNP [dm6]	A	C	1.201e^-7	3.165e^-4	INTRON mamo
3R	9969030	3R_9969030_SNP [dm3] 3R_14143308_SNP [dm6]	G	A	1.206e^-7	3.175e^-4	INTERGENIC
2L	14399650	2L_14399650_SNP [dm3] 2L_14399650_SNP [dm6]	A	G	1.237e^-7	3.250e^-4	INTRON elB
2L	9808448	2L_9808448_SNP [dm3] 2L_9808448_SNP [dm6]	T	A	1.280e^-7	3.358e^-4	INTRON nAChRalpha6
3R	9869187	3R_9869187_SNP [dm3] 3R_14043465_SNP [dm6]	A	G	1.298e^-7	3.401e^-4	INTERGENIC
2L	3804620	2L_3804620_SNP [dm3] 2L_3804620_SNP [dm6]	T	C	1.314e^-7	3.436e^-4	INTRON Reph	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	1067910	3R_1067910_SNP [dm3] 3R_5242188_SNP [dm6]	C	A	1.315e^-7	3.436e^-4	DOWNSTREAM CG12163 INTRON CG12163
3L	23707231	3L_23707231_DEL [dm3] 3L_23714131_DEL [dm6]	AGAGACATTTAAAAGTTACG...	A	1.322e^-7	3.449e^-4	UPSTREAM CG17454 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2L	9540231	2L_9540231_SNP [dm3] 2L_9540231_SNP [dm6]	C	T	1.340e^-7	3.475e^-4	UPSTREAM CG17855 DOWNSTREAM Oatp30B INTERGENIC	TF binding site mE1_TFBS_bab1
2R	17513142	2R_17513142_SNP [dm3] 2R_21625637_SNP [dm6]	G	A	1.341e^-7	3.475e^-4	INTRON mahj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	2656108	X_2656108_SNP [dm3] X_2762075_SNP [dm6]	T	G	1.341e^-7	3.475e^-4	INTRON kirre
X	2657099	X_2657099_SNP [dm3] X_2763066_SNP [dm6]	C	T	1.341e^-7	3.475e^-4	INTRON kirre
X	2657105	X_2657105_SNP [dm3] X_2763072_SNP [dm6]	C	T	1.341e^-7	3.475e^-4	INTRON kirre
3L	18679988	3L_18679988_SNP [dm3] 3L_18686888_SNP [dm6]	G	A	1.411e^-7	3.652e^-4	UPSTREAM Cyp12c1 INTERGENIC
3L	17437247	3L_17437247_SNP [dm3] 3L_17444147_SNP [dm6]	A	G	1.431e^-7	3.698e^-4	INTRON CG18265	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14604709	3L_14604709_SNP [dm3] 3L_14611609_SNP [dm6]	A	G	1.443e^-7	3.722e^-4	INTERGENIC
3L	1461558	3L_1461558_SNP [dm3] 3L_1461558_SNP [dm6]	G	A	1.451e^-7	3.733e^-4	INTRON Ptp61F EXON CR44842	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1461884	3L_1461884_SNP [dm3] 3L_1461884_SNP [dm6]	A	T	1.451e^-7	3.733e^-4	INTRON Ptp61F EXON CR44842	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14085844	3L_14085844_SNP [dm3] 3L_14092744_SNP [dm6]	T	C	1.521e^-7	3.908e^-4	INTERGENIC
3L	12475205	3L_12475205_SNP [dm3] 3L_12482105_SNP [dm6]	C	A	1.550e^-7	3.977e^-4	UPSTREAM CG33725 INTRON CG10663
3R	14141759	3R_14141759_INS [dm3] 3R_18316037_INS [dm6]	T	TGT	1.571e^-7	4.025e^-4	DOWNSTREAM CG31235 INTERGENIC
2L	3756071	2L_3756071_DEL [dm3] 2L_3756071_DEL [dm6]	AA	A	1.629e^-7	4.169e^-4	INTERGENIC	insulator Insulator_Class_II.mE01
3L	13138905	3L_13138905_SNP [dm3] 3L_13145805_SNP [dm6]	C	A	1.635e^-7	4.174e^-4	INTERGENIC
3R	22073050	3R_22073050_SNP [dm3] 3R_26247328_SNP [dm6]	T	G	1.636e^-7	4.174e^-4	INTRON CR42745	TF binding site mE1_TFBS_bab1
2L	14409897	2L_14409897_SNP [dm3] 2L_14409897_SNP [dm6]	C	T	1.683e^-7	4.281e^-4	UPSTREAM elB EXON CR44733	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
X	2656990	X_2656990_SNP [dm3] X_2762957_SNP [dm6]	T	C	1.684e^-7	4.281e^-4	INTRON kirre
X	2657076	X_2657076_SNP [dm3] X_2763043_SNP [dm6]	G	C	1.684e^-7	4.281e^-4	INTRON kirre
3L	17437228	3L_17437228_SNP [dm3] 3L_17444128_SNP [dm6]	C	T	1.722e^-7	4.358e^-4	INTRON CG18265	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11303019	3L_11303019_SNP [dm3] 3L_11309919_SNP [dm6]	G	T	1.726e^-7	4.358e^-4	INTERGENIC
3L	11303022	3L_11303022_SNP [dm3] 3L_11309922_SNP [dm6]	A	T	1.726e^-7	4.358e^-4	INTERGENIC
3L	11303031	3L_11303031_SNP [dm3] 3L_11309931_SNP [dm6]	C	T	1.726e^-7	4.358e^-4	INTERGENIC
3L	11303036	3L_11303036_SNP [dm3] 3L_11309936_SNP [dm6]	T	A	1.726e^-7	4.358e^-4	INTERGENIC
3L	1095870	3L_1095870_SNP [dm3] 3L_1095870_SNP [dm6]	C	T	1.768e^-7	4.451e^-4	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18698025	X_18698025_SNP [dm3] X_18803992_SNP [dm6]	T	C	1.768e^-7	4.451e^-4	DOWNSTREAM CR44841 INTRON Pk17E	TF binding site BDTNP1_TFBS_twi
3L	13080854	3L_13080854_SNP [dm3] 3L_13087754_SNP [dm6]	T	C	1.773e^-7	4.457e^-4	UPSTREAM CG17300 DOWNSTREAM CG11251 EXON CR45749	TF binding site BDTNP1_TFBS_prd
3L	18679989	3L_18679989_SNP [dm3] 3L_18686889_SNP [dm6]	A	G	1.804e^-7	4.528e^-4	UPSTREAM Cyp12c1 INTERGENIC
3R	22073483	3R_22073483_SNP [dm3] 3R_26247761_SNP [dm6]	G	A	1.824e^-7	4.573e^-4	INTRON CR42745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	6619674	2R_6619674_SNP [dm3] 2R_10732169_SNP [dm6]	G	A	1.826e^-7	4.573e^-4	UPSTREAM CG12338 & 1 other INTRON CG7220
2L	20503018	2L_20503018_SNP [dm3] 2L_20503018_SNP [dm6]	G	A	1.899e^-7	4.744e^-4	INTERGENIC
2L	14404022	2L_14404022_SNP [dm3] 2L_14404022_SNP [dm6]	T	C	1.900e^-7	4.744e^-4	INTRON elB	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	15508398	2L_15508398_DEL [dm3] 2L_15508398_DEL [dm6]	TT	T	1.905e^-7	4.750e^-4	INTERGENIC
3L	22508129	3L_22508129_SNP [dm3] 3L_22515029_SNP [dm6]	G	T	1.910e^-7	4.758e^-4	INTERGENIC
2L	11330131	2L_11330131_INS [dm3] 2L_11330131_INS [dm6]	TG	CTAGC	1.943e^-7	4.762e^-4	INTERGENIC
2L	3776829	2L_3776829_SNP [dm3] 2L_3776829_SNP [dm6]	A	G	1.943e^-7	4.762e^-4	INTRON bowl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	3776849	2L_3776849_SNP [dm3] 2L_3776849_SNP [dm6]	C	T	1.943e^-7	4.762e^-4	INTRON bowl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	13480180	3L_13480180_SNP [dm3] 3L_13487080_SNP [dm6]	G	A	1.943e^-7	4.762e^-4	UPSTREAM Abp1 INTRON Tgi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	18139380	3R_18139380_SNP [dm3] 3R_22313658_SNP [dm6]	A	C	1.943e^-7	4.762e^-4	INTRON CG34377
X	10860392	X_10860392_SNP [dm3] X_10966359_SNP [dm6]	C	T	1.943e^-7	4.762e^-4	INTRON C901
X	14799318	X_14799318_SNP [dm3] X_14905285_SNP [dm6]	G	T	1.943e^-7	4.762e^-4	INTRON Flo2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3791776	X_3791776_SNP [dm3] X_3897743_SNP [dm6]	A	G	1.943e^-7	4.762e^-4	INTRON CG42541
X	3791796	X_3791796_INS [dm3] X_3897763_INS [dm6]	C	CCTTGTTC	1.943e^-7	4.762e^-4	INTRON CG42541
X	4780799	X_4780799_SNP [dm3] X_4886766_SNP [dm6]	T	C	1.943e^-7	4.762e^-4	INTRON CG42594
X	4780800	X_4780800_DEL [dm3] X_4886767_DEL [dm6]	GAATTA	G	1.943e^-7	4.762e^-4	INTRON CG42594
X	6304941	X_6304941_SNP [dm3] X_6410908_SNP [dm6]	C	G	1.943e^-7	4.762e^-4	INTERGENIC
2L	13110777	2L_13110777_SNP [dm3] 2L_13110777_SNP [dm6]	A	G	1.953e^-7	4.768e^-4	INTERGENIC
2L	13110809	2L_13110809_SNP [dm3] 2L_13110809_SNP [dm6]	G	A	1.953e^-7	4.768e^-4	INTERGENIC
2L	13110826	2L_13110826_SNP [dm3] 2L_13110826_SNP [dm6]	T	A	1.953e^-7	4.768e^-4	INTERGENIC
2L	5494814	2L_5494814_SNP [dm3] 2L_5494814_SNP [dm6]	G	T	1.973e^-7	4.811e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6716423	X_6716423_SNP [dm3] X_6822390_SNP [dm6]	C	T	1.981e^-7	4.824e^-4	SYNONYMOUS_CODING CG4542 UPSTREAM Atx-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	23719057	3L_23719057_SNP [dm3] 3L_23725957_SNP [dm6]	A	T	2.009e^-7	4.887e^-4	UPSTREAM CG40298 INTERGENIC
X	9095081	X_9095081_SNP [dm3] X_9201048_SNP [dm6]	T	G	2.079e^-7	5.049e^-4	INTRON su_r_
3L	7314255	3L_7314255_SNP [dm3] 3L_7321155_SNP [dm6]	T	A	2.097e^-7	5.087e^-4	UTR_3_PRIME CG8607 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4059321	X_4059321_SNP [dm3] X_4165288_SNP [dm6]	A	C	2.104e^-7	5.097e^-4	INTRON Fas2
3L	17437177	3L_17437177_SNP [dm3] 3L_17444077_SNP [dm6]	T	C	2.158e^-7	5.221e^-4	INTRON CG18265	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1929612	3L_1929612_SNP [dm3] 3L_1929612_SNP [dm6]	T	C	2.168e^-7	5.238e^-4	INTRON Dbx
X	10859402	X_10859402_SNP [dm3] X_10965369_SNP [dm6]	A	C	2.192e^-7	5.289e^-4	INTRON C901	TF binding site mE1_TFBS_chinmo
X	14942245	X_14942245_SNP [dm3] X_15048212_SNP [dm6]	G	A	2.203e^-7	5.308e^-4	UPSTREAM CG5541 INTRON hiw & 1 other	transposable element FlyBase
2L	10246287	2L_10246287_SNP [dm3] 2L_10246287_SNP [dm6]	A	C	2.216e^-7	5.332e^-4	START_GAINED chico UTR_5_PRIME chico DOWNSTREAM CR44995 INTRON chico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9540238	2L_9540238_DEL [dm3] 2L_9540238_DEL [dm6]	TATAG	T	2.218e^-7	5.332e^-4	UPSTREAM CG17855 DOWNSTREAM Oatp30B INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	15973885	2L_15973885_SNP [dm3] 2L_15973885_SNP [dm6]	G	C	2.242e^-7	5.369e^-4	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	13071035	3L_13071035_SNP [dm3] 3L_13077935_SNP [dm6]	A	C	2.242e^-7	5.369e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	5308307	3R_5308307_DEL [dm3] 3R_9482585_DEL [dm6]	AC	A	2.242e^-7	5.369e^-4	DOWNSTREAM CR45203 INTRON CG16779
2R	20480827	2R_20480827_SNP [dm3] 2R_24593304_SNP [dm6]	C	A	2.284e^-7	5.392e^-4	DOWNSTREAM pio INTRON pio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	20485562	2R_20485562_SNP [dm3] 2R_24598039_SNP [dm6]	T	C	2.284e^-7	5.392e^-4	SYNONYMOUS_CODING CG13587 DOWNSTREAM pio
2R	20498208	2R_20498208_SNP [dm3] 2R_24610685_SNP [dm6]	A	T	2.284e^-7	5.392e^-4	UTR_3_PRIME CG42360 DOWNSTREAM CG4741
2R	20503104	2R_20503104_SNP [dm3] 2R_24615581_SNP [dm6]	T	A	2.284e^-7	5.392e^-4	UTR_3_PRIME CG13594 UPSTREAM CG4741
2R	20504051	2R_20504051_SNP [dm3] 2R_24616528_SNP [dm6]	C	T	2.284e^-7	5.392e^-4	INTRON CG13594
2R	20504626	2R_20504626_SNP [dm3] 2R_24617103_SNP [dm6]	C	G	2.284e^-7	5.392e^-4	INTRON CG13594
2R	20506244	2R_20506244_SNP [dm3] 2R_24618721_SNP [dm6]	T	C	2.284e^-7	5.392e^-4	INTRON CG13594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20506413	2R_20506413_SNP [dm3] 2R_24618890_SNP [dm6]	C	T	2.284e^-7	5.392e^-4	INTRON CG13594	TF binding site mE1_TFBS_chinmo
X	21453520	X_21453520_INS [dm3] X_21582493_INS [dm6]	C	CATCCGTGCTCAAGTTAAGT...	2.284e^-7	5.392e^-4	INTERGENIC
X	21453738	X_21453738_SNP [dm3] X_21582711_SNP [dm6]	A	G	2.284e^-7	5.392e^-4	INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
X	21453770	X_21453770_SNP [dm3] X_21582743_SNP [dm6]	A	G	2.284e^-7	5.392e^-4	INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	7739054	3R_7739054_SNP [dm3] 3R_11913332_SNP [dm6]	G	T	2.307e^-7	5.440e^-4	INTRON Cad87A
2R	6619676	2R_6619676_SNP [dm3] 2R_10732171_SNP [dm6]	C	T	2.319e^-7	5.461e^-4	UPSTREAM CG12338 & 1 other INTRON CG7220
3R	9444897	3R_9444897_SNP [dm3] 3R_13619175_SNP [dm6]	A	T	2.324e^-7	5.467e^-4	UPSTREAM CR45680 INTERGENIC
3L	1461725	3L_1461725_SNP [dm3] 3L_1461725_SNP [dm6]	A	T	2.346e^-7	5.510e^-4	INTRON Ptp61F EXON CR44842	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21875983	3L_21875983_SNP [dm3] 3L_21882883_SNP [dm6]	A	T	2.363e^-7	5.544e^-4	INTRON mub
2L	3632890	2L_3632890_SNP [dm3] 2L_3632890_SNP [dm6]	T	A	2.403e^-7	5.624e^-4	UPSTREAM for INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	14799265	X_14799265_DEL [dm3] X_14905232_DEL [dm6]	TGCTCTTAAAAAAATGTTCA...	T	2.403e^-7	5.624e^-4	INTRON Flo2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6299568	2R_6299568_SNP [dm3] 2R_10412063_SNP [dm6]	T	C	2.425e^-7	5.669e^-4	UPSTREAM CG33475 INTRON CG42732
3L	5169708	3L_5169708_DEL [dm3] 3L_5176608_DEL [dm6]	GCAAAA	TT	2.438e^-7	5.690e^-4	INTRON shep
2L	13110799	2L_13110799_SNP [dm3] 2L_13110799_SNP [dm6]	T	G	2.456e^-7	5.718e^-4	INTERGENIC
3L	3663639	3L_3663639_INS [dm3] 3L_3663639_INS [dm6]	C	AGAT	2.462e^-7	5.718e^-4	INTERGENIC
3L	3663643	3L_3663643_MNP [dm3] 3L_3663643_MNP [dm6]	CTG	ACC	2.462e^-7	5.718e^-4	INTERGENIC
3L	3663647	3L_3663647_SNP [dm3] 3L_3663647_SNP [dm6]	C	G	2.462e^-7	5.718e^-4	INTERGENIC
X	3014944	X_3014944_SNP [dm3] X_3120911_SNP [dm6]	C	T	2.465e^-7	5.718e^-4	INTRON kirre
2R	14832527	2R_14832527_SNP [dm3] 2R_18945022_SNP [dm6]	A	G	2.495e^-7	5.779e^-4	INTRON sano
3L	17771204	3L_17771204_SNP [dm3] 3L_17778104_SNP [dm6]	A	T	2.497e^-7	5.779e^-4	INTERGENIC
2L	19028471	2L_19028471_SNP [dm3] 2L_19028471_SNP [dm6]	G	A	2.535e^-7	5.859e^-4	INTRON Side
2R	15286482	2R_15286482_SNP [dm3] 2R_19398977_SNP [dm6]	G	T	2.596e^-7	5.988e^-4	UPSTREAM CR43430 DOWNSTREAM hts INTRON hts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11915938	3L_11915938_SNP [dm3] 3L_11922838_SNP [dm6]	T	G	2.601e^-7	5.988e^-4	SYNONYMOUS_CODING CG5718 DOWNSTREAM CG11588 INTRON CG44837	TF binding site mE1_TFBS_cad
X	14799320	X_14799320_SNP [dm3] X_14905287_SNP [dm6]	T	C	2.601e^-7	5.988e^-4	INTRON Flo2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16327909	2R_16327909_SNP [dm3] 2R_20440404_SNP [dm6]	C	T	2.640e^-7	6.071e^-4	INTRON CG12484	TF binding site mE1_TFBS_inv
2R	6440365	2R_6440365_SNP [dm3] 2R_10552860_SNP [dm6]	A	G	2.651e^-7	6.083e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2R	6440361	2R_6440361_SNP [dm3] 2R_10552856_SNP [dm6]	G	A	2.652e^-7	6.083e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2R	20486368	2R_20486368_SNP [dm3] 2R_24598845_SNP [dm6]	G	A	2.770e^-7	6.308e^-4	DOWNSTREAM pio & 1 other INTRON CG13587	TF binding site mE1_TFBS_sens
2L	14404102	2L_14404102_SNP [dm3] 2L_14404102_SNP [dm6]	A	G	2.779e^-7	6.308e^-4	INTRON elB	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	20203528	2R_20203528_SNP [dm3] 2R_24316005_SNP [dm6]	A	T	2.782e^-7	6.308e^-4	INTERGENIC
2R	20506326	2R_20506326_SNP [dm3] 2R_24618803_SNP [dm6]	A	T	2.810e^-7	6.308e^-4	INTRON CG13594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10025664	3L_10025664_SNP [dm3] 3L_10032564_SNP [dm6]	T	C	2.810e^-7	6.308e^-4	INTRON dpr6
2R	20548175	2R_20548175_SNP [dm3] 2R_24660652_SNP [dm6]	A	G	2.819e^-7	6.308e^-4	UPSTREAM CG3663 INTERGENIC
3L	10300349	3L_10300349_SNP [dm3] 3L_10307249_SNP [dm6]	A	T	2.823e^-7	6.308e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17491255	2R_17491255_DEL [dm3] 2R_21603750_DEL [dm6]	AA	A	2.827e^-7	6.308e^-4	DOWNSTREAM CR45150 INTERGENIC
2L	1785888	2L_1785888_SNP [dm3] 2L_1785888_SNP [dm6]	A	C	2.838e^-7	6.308e^-4	DOWNSTREAM Gr22e INTERGENIC
2L	1785984	2L_1785984_DEL [dm3] 2L_1785984_DEL [dm6]	TTTTATAA	T	2.838e^-7	6.308e^-4	DOWNSTREAM Gr22e INTERGENIC
2L	1786123	2L_1786123_DEL [dm3] 2L_1786123_DEL [dm6]	GACATCCAATCGTTT...	C	2.838e^-7	6.308e^-4	DOWNSTREAM Gr22e INTERGENIC
2L	1786521	2L_1786521_SNP [dm3] 2L_1786521_SNP [dm6]	C	T	2.838e^-7	6.308e^-4	INTERGENIC
2L	1786865	2L_1786865_SNP [dm3] 2L_1786865_SNP [dm6]	T	C	2.838e^-7	6.308e^-4	INTERGENIC
2L	1787046	2L_1787046_SNP [dm3] 2L_1787046_SNP [dm6]	C	T	2.838e^-7	6.308e^-4	INTERGENIC
2L	1787055	2L_1787055_SNP [dm3] 2L_1787055_SNP [dm6]	T	C	2.838e^-7	6.308e^-4	INTERGENIC
2L	1787068	2L_1787068_SNP [dm3] 2L_1787068_SNP [dm6]	A	G	2.838e^-7	6.308e^-4	INTERGENIC
2L	1787218	2L_1787218_SNP [dm3] 2L_1787218_SNP [dm6]	A	G	2.838e^-7	6.308e^-4	INTERGENIC
2L	1787379	2L_1787379_SNP [dm3] 2L_1787379_SNP [dm6]	G	A	2.838e^-7	6.308e^-4	INTERGENIC
2L	1789310	2L_1789310_SNP [dm3] 2L_1789310_SNP [dm6]	G	C	2.838e^-7	6.308e^-4	INTRON Gr22d
2L	1789438	2L_1789438_SNP [dm3] 2L_1789438_SNP [dm6]	A	G	2.838e^-7	6.308e^-4	SYNONYMOUS_CODING Gr22d
2L	1789733	2L_1789733_SNP [dm3] 2L_1789733_SNP [dm6]	T	G	2.838e^-7	6.308e^-4	STOP_LOST Gr22d DOWNSTREAM Gr22c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1789736	2L_1789736_SNP [dm3] 2L_1789736_SNP [dm6]	G	A	2.838e^-7	6.308e^-4	NON_SYNONYMOUS_CODING Gr22d DOWNSTREAM Gr22c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1789777	2L_1789777_SNP [dm3] 2L_1789777_SNP [dm6]	C	T	2.838e^-7	6.308e^-4	STOP_GAINED Gr22d DOWNSTREAM Gr22c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1790209	2L_1790209_SNP [dm3] 2L_1790209_SNP [dm6]	C	T	2.838e^-7	6.308e^-4	SYNONYMOUS_CODING Gr22d DOWNSTREAM Gr22c
2L	1790259	2L_1790259_SNP [dm3] 2L_1790259_SNP [dm6]	C	T	2.838e^-7	6.308e^-4	NON_SYNONYMOUS_CODING Gr22d DOWNSTREAM Gr22c
2L	1790735	2L_1790735_SNP [dm3] 2L_1790735_SNP [dm6]	T	G	2.838e^-7	6.308e^-4	NON_SYNONYMOUS_CODING Gr22c UPSTREAM Gr22d
2L	8875826	2L_8875826_SNP [dm3] 2L_8875826_SNP [dm6]	G	A	2.841e^-7	6.308e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	7334485	X_7334485_SNP [dm3] X_7440452_SNP [dm6]	A	G	2.848e^-7	6.316e^-4	INTERGENIC
2R	20505538	2R_20505538_SNP [dm3] 2R_24618015_SNP [dm6]	A	T	2.934e^-7	6.498e^-4	INTRON CG13594	TF binding site mE1_TFBS_chinmo
2L	13110787	2L_13110787_SNP [dm3] 2L_13110787_SNP [dm6]	A	T	2.938e^-7	6.499e^-4	INTERGENIC
2L	5494847	2L_5494847_SNP [dm3] 2L_5494847_SNP [dm6]	C	A	2.988e^-7	6.601e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7125952	3L_7125952_SNP [dm3] 3L_7132852_SNP [dm6]	T	A	3.000e^-7	6.620e^-4	INTRON Dbi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
2L	14409981	2L_14409981_SNP [dm3] 2L_14409981_SNP [dm6]	T	A	3.016e^-7	6.647e^-4	UPSTREAM elB EXON CR44733	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2R	14048413	2R_14048413_SNP [dm3] 2R_18160908_SNP [dm6]	C	T	3.029e^-7	6.669e^-4	UTR_5_PRIME CG10915 DOWNSTREAM CG10914	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	7032919	2R_7032919_SNP [dm3] 2R_11145414_SNP [dm6]	G	T	3.046e^-7	6.691e^-4	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7032957	2R_7032957_SNP [dm3] 2R_11145452_SNP [dm6]	C	G	3.046e^-7	6.691e^-4	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3663649	3L_3663649_SNP [dm3] 3L_3663649_SNP [dm6]	G	T	3.073e^-7	6.742e^-4	INTERGENIC
X	14460374	X_14460374_SNP [dm3] X_14566341_SNP [dm6]	T	C	3.082e^-7	6.753e^-4	INTERGENIC
2L	3264979	2L_3264979_DEL [dm3] 2L_3264979_DEL [dm6]	TAGAGTTAAAAT...	T	3.087e^-7	6.756e^-4	EXON CR45706
2L	2229608	2L_2229608_SNP [dm3] 2L_2229608_SNP [dm6]	T	G	3.149e^-7	6.884e^-4	INTRON rti	TF binding site mE1_TFBS_HSA
3R	2983542	3R_2983542_SNP [dm3] 3R_7157820_SNP [dm6]	T	G	3.178e^-7	6.931e^-4	INTERGENIC
3R	3031706	3R_3031706_SNP [dm3] 3R_7205984_SNP [dm6]	C	T	3.178e^-7	6.931e^-4	INTERGENIC
2L	8662412	2L_8662412_INS [dm3] 2L_8662412_INS [dm6]	C	CCC	3.189e^-7	6.948e^-4	INTRON Sema-1a
2R	15484642	2R_15484642_SNP [dm3] 2R_19597137_SNP [dm6]	T	A	3.203e^-7	6.961e^-4	DOWNSTREAM CG16716 INTRON sm
2R	15484659	2R_15484659_INS [dm3] 2R_19597154_INS [dm6]	A	AAT	3.203e^-7	6.961e^-4	DOWNSTREAM CG16716 INTRON sm
2R	9899367	2R_9899367_SNP [dm3] 2R_14011862_SNP [dm6]	C	T	3.225e^-7	7.001e^-4	INTRON mam
2R	2745703	2R_2745703_SNP [dm3] 2R_6858198_SNP [dm6]	T	C	3.234e^-7	7.013e^-4	INTERGENIC
2R	8876232	2R_8876232_SNP [dm3] 2R_12988727_SNP [dm6]	A	G	3.267e^-7	7.077e^-4	INTERGENIC
3R	24418000	3R_24418000_SNP [dm3] 3R_28592278_SNP [dm6]	G	T	3.296e^-7	7.121e^-4	DOWNSTREAM MRE23 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc
3R	24420927	3R_24420927_SNP [dm3] 3R_28595205_SNP [dm6]	A	T	3.296e^-7	7.121e^-4	DOWNSTREAM CR43440 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	14018729	3R_14018729_SNP [dm3] 3R_18193007_SNP [dm6]	T	C	3.314e^-7	7.150e^-4	UTR_3_PRIME Ssdp
2R	6440362	2R_6440362_SNP [dm3] 2R_10552857_SNP [dm6]	T	A	3.317e^-7	7.150e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2L	22899342	2L_22899342_SNP [dm3] 2L_23006610_SNP [dm6]	A	T	3.378e^-7	7.273e^-4	INTRON Cht3
2L	13110827	2L_13110827_SNP [dm3] 2L_13110827_SNP [dm6]	T	G	3.391e^-7	7.293e^-4	INTERGENIC
X	7533176	X_7533176_SNP [dm3] X_7639143_SNP [dm6]	T	G	3.404e^-7	7.312e^-4	INTRON ct
3L	8601480	3L_8601480_SNP [dm3] 3L_8608380_SNP [dm6]	C	A	3.432e^-7	7.365e^-4	INTRON CG6282
2L	11185624	2L_11185624_SNP [dm3] 2L_11185624_SNP [dm6]	A	C	3.446e^-7	7.386e^-4	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	6987725	2L_6987725_SNP [dm3] 2L_6987725_SNP [dm6]	G	A	3.471e^-7	7.431e^-4	DOWNSTREAM CR44326 INTRON uif
3L	10324957	3L_10324957_SNP [dm3] 3L_10331857_SNP [dm6]	A	G	3.482e^-7	7.446e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv
3L	12058862	3L_12058862_SNP [dm3] 3L_12065762_SNP [dm6]	G	A	3.501e^-7	7.448e^-4	UPSTREAM rols INTERGENIC
2L	1787751	2L_1787751_SNP [dm3] 2L_1787751_SNP [dm6]	T	A	3.515e^-7	7.448e^-4	INTERGENIC
2L	1787752	2L_1787752_SNP [dm3] 2L_1787752_SNP [dm6]	G	T	3.515e^-7	7.448e^-4	INTERGENIC
2L	1787785	2L_1787785_SNP [dm3] 2L_1787785_SNP [dm6]	T	G	3.515e^-7	7.448e^-4	INTERGENIC
2L	1788302	2L_1788302_SNP [dm3] 2L_1788302_SNP [dm6]	A	G	3.515e^-7	7.448e^-4	DOWNSTREAM Gr22d INTERGENIC
2L	1788690	2L_1788690_SNP [dm3] 2L_1788690_SNP [dm6]	A	G	3.515e^-7	7.448e^-4	DOWNSTREAM Gr22d INTERGENIC
2L	1789936	2L_1789936_SNP [dm3] 2L_1789936_SNP [dm6]	C	T	3.515e^-7	7.448e^-4	NON_SYNONYMOUS_CODING Gr22d DOWNSTREAM Gr22c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1789954	2L_1789954_SNP [dm3] 2L_1789954_SNP [dm6]	G	C	3.515e^-7	7.448e^-4	SYNONYMOUS_CODING Gr22d DOWNSTREAM Gr22c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1790540	2L_1790540_SNP [dm3] 2L_1790540_SNP [dm6]	C	T	3.526e^-7	7.453e^-4	UPSTREAM Gr22d DOWNSTREAM Gr22c INTERGENIC
X	21453537	X_21453537_INS [dm3] X_21582510_INS [dm6]	T	TATT	3.529e^-7	7.453e^-4	INTERGENIC
2L	1789108	2L_1789108_SNP [dm3] 2L_1789108_SNP [dm6]	A	T	3.531e^-7	7.453e^-4	DOWNSTREAM Gr22d INTERGENIC
2L	1787664	2L_1787664_SNP [dm3] 2L_1787664_SNP [dm6]	C	A	3.533e^-7	7.453e^-4	INTERGENIC
2L	4357017	2L_4357017_SNP [dm3] 2L_4357017_SNP [dm6]	C	A	3.559e^-7	7.499e^-4	INTERGENIC
3R	12675346	3R_12675346_SNP [dm3] 3R_16849624_SNP [dm6]	T	A	3.577e^-7	7.527e^-4	UPSTREAM iab-8 & 1 other INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7900870	3R_7900870_SNP [dm3] 3R_12075148_SNP [dm6]	C	A	3.595e^-7	7.557e^-4	INTRON CG14741	TF binding site mE1_TFBS_cad
2R	16545023	2R_16545023_SNP [dm3] 2R_20657518_SNP [dm6]	T	C	3.617e^-7	7.596e^-4	SYNONYMOUS_CODING Lrt UPSTREAM CG11159 & 1 other DOWNSTREAM tRNA:CR30211	TF binding site mE1_TFBS_cad
2L	7273783	2L_7273783_SNP [dm3] 2L_7273783_SNP [dm6]	T	C	3.669e^-7	7.696e^-4	INTRON Wnt4	TF binding site mE1_TFBS_HSA
2L	1788059	2L_1788059_SNP [dm3] 2L_1788059_SNP [dm6]	T	C	3.687e^-7	7.724e^-4	INTERGENIC
3R	9921021	3R_9921021_SNP [dm3] 3R_14095299_SNP [dm6]	G	C	3.700e^-7	7.742e^-4	INTRON CCHa1
3L	8507031	3L_8507031_SNP [dm3] 3L_8513931_SNP [dm6]	G	T	3.727e^-7	7.790e^-4	UTR_3_PRIME CG6683 DOWNSTREAM CG6745 INTRON CG6765	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2801083	3L_2801083_SNP [dm3] 3L_2801083_SNP [dm6]	G	T	3.772e^-7	7.872e^-4	INTRON CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10244416	2L_10244416_SNP [dm3] 2L_10244416_SNP [dm6]	C	T	3.783e^-7	7.872e^-4	INTRON CR44995 & 1 other
2L	10244425	2L_10244425_SNP [dm3] 2L_10244425_SNP [dm6]	A	G	3.783e^-7	7.872e^-4	INTRON CR44995 & 1 other
2R	7033110	2R_7033110_SNP [dm3] 2R_11145605_SNP [dm6]	G	T	3.784e^-7	7.872e^-4	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15508265	2L_15508265_SNP [dm3] 2L_15508265_SNP [dm6]	A	T	3.787e^-7	7.872e^-4	INTERGENIC
2R	16756091	2R_16756091_INS [dm3] 2R_20868586_INS [dm6]	T	TAT	3.792e^-7	7.873e^-4	UTR_3_PRIME IM4 DOWNSTREAM IM4
2L	16848798	2L_16848798_SNP [dm3] 2L_16848798_SNP [dm6]	T	G	3.796e^-7	7.873e^-4	UPSTREAM CG13284 DOWNSTREAM CG31810 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	7298847	2L_7298847_SNP [dm3] 2L_7298847_SNP [dm6]	C	A	3.947e^-7	8.177e^-4	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15388470	2L_15388470_SNP [dm3] 2L_15388470_SNP [dm6]	C	G	3.954e^-7	8.182e^-4	INTERGENIC
3L	2575158	3L_2575158_SNP [dm3] 3L_2575158_SNP [dm6]	C	A	3.960e^-7	8.185e^-4	INTRON msn
3L	11251577	3L_11251577_SNP [dm3] 3L_11258477_SNP [dm6]	A	T	4.007e^-7	8.273e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14401983	2L_14401983_DEL [dm3] 2L_14401983_DEL [dm6]	TG	T	4.049e^-7	8.351e^-4	INTRON elB
2L	14409968	2L_14409968_SNP [dm3] 2L_14409968_SNP [dm6]	G	T	4.079e^-7	8.405e^-4	UPSTREAM elB EXON CR44733	TF binding site mE1_TFBS_D mE1_TFBS_Trl
3L	11172414	3L_11172414_SNP [dm3] 3L_11179314_SNP [dm6]	C	G	4.113e^-7	8.426e^-4	SYNONYMOUS_CODING GlcAT-P
3L	11173248	3L_11173248_SNP [dm3] 3L_11180148_SNP [dm6]	C	A	4.113e^-7	8.426e^-4	INTRON GlcAT-P
3L	7100449	3L_7100449_DEL [dm3] 3L_7107349_DEL [dm6]	ATTGAAAATAGAATCATCTT...	C	4.113e^-7	8.426e^-4	INTRON form3
3L	7100480	3L_7100480_SNP [dm3] 3L_7107380_SNP [dm6]	A	C	4.113e^-7	8.426e^-4	INTRON form3
3L	7100481	3L_7100481_SNP [dm3] 3L_7107381_SNP [dm6]	G	T	4.113e^-7	8.426e^-4	INTRON form3
2L	13110838	2L_13110838_SNP [dm3] 2L_13110838_SNP [dm6]	A	T	4.144e^-7	8.480e^-4	INTERGENIC
3L	10925919	3L_10925919_SNP [dm3] 3L_10932819_SNP [dm6]	G	A	4.166e^-7	8.507e^-4	INTERGENIC
3L	2804694	3L_2804694_SNP [dm3] 3L_2804694_SNP [dm6]	C	T	4.166e^-7	8.507e^-4	INTRON CG43444	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	5024276	3R_5024276_SNP [dm3] 3R_9198554_SNP [dm6]	G	A	4.189e^-7	8.545e^-4	INTRON pum
2L	12872319	2L_12872319_SNP [dm3] 2L_12872319_SNP [dm6]	C	T	4.199e^-7	8.547e^-4	INTERGENIC
2L	3924618	2L_3924618_SNP [dm3] 2L_3924618_SNP [dm6]	C	T	4.204e^-7	8.547e^-4	INTRON fred
2R	4591107	2R_4591107_SNP [dm3] 2R_8703602_SNP [dm6]	C	T	4.204e^-7	8.547e^-4	SPLICE_SITE_REGION CG12376 INTRON CG12376
2L	9497212	2L_9497212_SNP [dm3] 2L_9497212_SNP [dm6]	C	G	4.217e^-7	8.564e^-4	INTRON CG33298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4299029	3L_4299029_SNP [dm3] 3L_4299029_SNP [dm6]	C	A	4.256e^-7	8.635e^-4	UTR_5_PRIME dyl INTRON dyl
3L	1057308	3L_1057308_SNP [dm3] 3L_1057308_SNP [dm6]	A	T	4.271e^-7	8.655e^-4	INTRON bab1
3L	22439645	3L_22439645_SNP [dm3] 3L_22446545_SNP [dm6]	C	A	4.281e^-7	8.667e^-4	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22134356	3R_22134356_SNP [dm3] 3R_26308634_SNP [dm6]	T	C	4.309e^-7	8.714e^-4	INTERGENIC
2L	3755979	2L_3755979_SNP [dm3] 2L_3755979_SNP [dm6]	G	A	4.316e^-7	8.719e^-4	INTERGENIC
X	18644597	X_18644597_SNP [dm3] X_18750564_SNP [dm6]	C	G	4.331e^-7	8.739e^-4	INTERGENIC
2L	6142368	2L_6142368_SNP [dm3] 2L_6142368_SNP [dm6]	G	A	4.346e^-7	8.750e^-4	SYNONYMOUS_CODING CG13991	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10205103	3L_10205103_SNP [dm3] 3L_10212003_SNP [dm6]	T	C	4.346e^-7	8.750e^-4	INTERGENIC
3R	3053362	3R_3053362_SNP [dm3] 3R_7227640_SNP [dm6]	A	G	4.357e^-7	8.753e^-4	INTRON CG14608
3R	3053923	3R_3053923_SNP [dm3] 3R_7228201_SNP [dm6]	A	T	4.357e^-7	8.753e^-4	INTRON CG14608
3L	11301788	3L_11301788_DEL [dm3] 3L_11308688_DEL [dm6]	TT	T	4.398e^-7	8.822e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_gt
2L	1789815	2L_1789815_SNP [dm3] 2L_1789815_SNP [dm6]	C	T	4.401e^-7	8.822e^-4	NON_SYNONYMOUS_CODING Gr22d DOWNSTREAM Gr22c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14401987	2L_14401987_SNP [dm3] 2L_14401987_SNP [dm6]	T	C	4.441e^-7	8.885e^-4	INTRON elB
3L	14085298	3L_14085298_SNP [dm3] 3L_14092198_SNP [dm6]	A	T	4.446e^-7	8.885e^-4	INTERGENIC
X	2763388	X_2763388_SNP [dm3] X_2869355_SNP [dm6]	T	A	4.446e^-7	8.885e^-4	INTRON kirre
2R	7367559	2R_7367559_SNP [dm3] 2R_11480054_SNP [dm6]	T	C	4.474e^-7	8.930e^-4	INTRON inv
2R	20513744	2R_20513744_SNP [dm3] 2R_24626221_SNP [dm6]	C	T	4.478e^-7	8.930e^-4	INTRON CG13594
X	21453953	X_21453953_SNP [dm3] X_21582926_SNP [dm6]	G	T	4.496e^-7	8.955e^-4	UPSTREAM CR44711 INTERGENIC
2R	17126515	2R_17126515_SNP [dm3] 2R_21239010_SNP [dm6]	C	G	4.514e^-7	8.981e^-4	INTRON ASPP
3L	14604694	3L_14604694_SNP [dm3] 3L_14611594_SNP [dm6]	T	C	4.522e^-7	8.988e^-4	INTERGENIC
3L	13259637	3L_13259637_SNP [dm3] 3L_13266537_SNP [dm6]	A	C	4.549e^-7	9.032e^-4	INTRON caps
3L	10025625	3L_10025625_SNP [dm3] 3L_10032525_SNP [dm6]	G	T	4.625e^-7	9.172e^-4	INTRON dpr6
2R	6844633	2R_6844633_SNP [dm3] 2R_10957128_SNP [dm6]	T	C	4.636e^-7	9.185e^-4	INTERGENIC
2L	15577887	2L_15577887_SNP [dm3] 2L_15577887_SNP [dm6]	T	G	4.655e^-7	9.213e^-4	INTRON kek3
X	21453753	X_21453753_SNP [dm3] X_21582726_SNP [dm6]	T	A	4.693e^-7	9.271e^-4	INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	1786155	2L_1786155_SNP [dm3] 2L_1786155_SNP [dm6]	A	T	4.694e^-7	9.271e^-4	DOWNSTREAM Gr22e INTERGENIC
2L	15508218	2L_15508218_SNP [dm3] 2L_15508218_SNP [dm6]	A	C	4.700e^-7	9.272e^-4	INTERGENIC
2L	9726691	2L_9726691_SNP [dm3] 2L_9726691_SNP [dm6]	T	A	4.709e^-7	9.279e^-4	INTRON Nckx30C
2L	1114375	2L_1114375_SNP [dm3] 2L_1114375_SNP [dm6]	C	T	4.714e^-7	9.279e^-4	DOWNSTREAM Pino & 1 other INTERGENIC
X	13253737	X_13253737_SNP [dm3] X_13359704_SNP [dm6]	T	A	4.736e^-7	9.313e^-4	INTRON Syt12
3L	7700606	3L_7700606_SNP [dm3] 3L_7707506_SNP [dm6]	C	T	4.760e^-7	9.352e^-4	INTRON CG32373 & 1 other	TF binding site mE1_TFBS_chinmo
3L	4013531	3L_4013531_SNP [dm3] 3L_4013531_SNP [dm6]	T	G	4.836e^-7	9.491e^-4	INTERGENIC
2L	10571653	2L_10571653_SNP [dm3] 2L_10571653_SNP [dm6]	A	C	4.878e^-7	9.563e^-4	INTRON Trim9
X	8598425	X_8598425_DEL [dm3] X_8704392_DEL [dm6]	GTTAG	G	4.943e^-7	9.681e^-4	INTERGENIC
X	19743691	X_19743691_SNP [dm3] X_19849658_SNP [dm6]	A	C	4.988e^-7	9.758e^-4	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2804749	3L_2804749_SNP [dm3] 3L_2804749_SNP [dm6]	A	T	5.022e^-7	9.814e^-4	INTRON CG43444	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	10925862	3L_10925862_SNP [dm3] 3L_10932762_SNP [dm6]	C	A	5.050e^-7	9.830e^-4	INTERGENIC
3L	10925944	3L_10925944_SNP [dm3] 3L_10932844_SNP [dm6]	T	C	5.050e^-7	9.830e^-4	INTERGENIC
3R	14982500	3R_14982500_SNP [dm3] 3R_19156778_SNP [dm6]	C	A	5.064e^-7	9.830e^-4	UTR_5_PRIME CG11779 UPSTREAM nos INTRON CG11779	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	17418421	3L_17418421_SNP [dm3] 3L_17425321_SNP [dm6]	C	A	5.078e^-7	9.830e^-4	UPSTREAM CG7630 & 1 other DOWNSTREAM CG33051 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17418422	3L_17418422_SNP [dm3] 3L_17425322_SNP [dm6]	T	A	5.078e^-7	9.830e^-4	UPSTREAM CG7630 & 1 other DOWNSTREAM CG33051 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17418424	3L_17418424_DEL [dm3] 3L_17425324_DEL [dm6]	AGAC	A	5.078e^-7	9.830e^-4	UPSTREAM CG7630 & 1 other DOWNSTREAM CG33051 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17418487	3L_17418487_SNP [dm3] 3L_17425387_SNP [dm6]	G	C	5.078e^-7	9.830e^-4	UPSTREAM CG7630 & 1 other DOWNSTREAM CG33051 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17772053	3L_17772053_SNP [dm3] 3L_17778953_SNP [dm6]	T	C	5.078e^-7	9.830e^-4	INTERGENIC
3L	17772067	3L_17772067_SNP [dm3] 3L_17778967_SNP [dm6]	A	T	5.078e^-7	9.830e^-4	INTERGENIC
2R	12410205	2R_12410205_SNP [dm3] 2R_16522700_SNP [dm6]	T	G	5.128e^-7	9.916e^-4	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl
3R	6856418	3R_6856418_DEL [dm3] 3R_11030696_DEL [dm6]	CT	C	5.135e^-7	9.920e^-4	INTRON CG34114
3L	1345931	3L_1345931_SNP [dm3] 3L_1345931_SNP [dm6]	A	G	5.211e^-7	0.001	INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8596968	3L_8596968_SNP [dm3] 3L_8603868_SNP [dm6]	A	C	5.213e^-7	0.001	UPSTREAM CG6282 INTRON CG5989	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14373762	2L_14373762_SNP [dm3] 2L_14373762_SNP [dm6]	A	T	5.391e^-7	0.001	INTERGENIC
2L	13135294	2L_13135294_SNP [dm3] 2L_13135294_SNP [dm6]	C	T	5.420e^-7	0.001	DOWNSTREAM CG5122 INTERGENIC
3R	4442768	3R_4442768_SNP [dm3] 3R_8617046_SNP [dm6]	C	T	5.465e^-7	0.001	INTRON 5-HT2B	TF binding site mE1_TFBS_inv
2L	8401492	2L_8401492_SNP [dm3] 2L_8401492_SNP [dm6]	T	A	5.481e^-7	0.001	UTR_3_PRIME fy & 1 other
3L	16923111	3L_16923111_SNP [dm3] 3L_16930011_SNP [dm6]	T	A	5.491e^-7	0.001	UTR_3_PRIME CG11905 INTRON CG11905	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16923114	3L_16923114_SNP [dm3] 3L_16930014_SNP [dm6]	G	A	5.491e^-7	0.001	UTR_3_PRIME CG11905 INTRON CG11905	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16923120	3L_16923120_DEL [dm3] 3L_16930020_DEL [dm6]	TG	T	5.491e^-7	0.001	UTR_3_PRIME CG11905 INTRON CG11905	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3804595	2L_3804595_SNP [dm3] 2L_3804595_SNP [dm6]	G	C	5.507e^-7	0.001	INTRON Reph	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	3663652	3L_3663652_SNP [dm3] 3L_3663652_SNP [dm6]	T	A	5.515e^-7	0.001	INTERGENIC
3L	3663653	3L_3663653_SNP [dm3] 3L_3663653_SNP [dm6]	G	T	5.515e^-7	0.001	INTERGENIC
3L	10927853	3L_10927853_DEL [dm3] 3L_10934753_DEL [dm6]	GC	G	5.533e^-7	0.001	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10135191	3L_10135191_DEL [dm3] 3L_10142091_DEL [dm6]	TCGTAAG	T	5.554e^-7	0.001	INTERGENIC
3L	11301485	3L_11301485_SNP [dm3] 3L_11308385_SNP [dm6]	T	C	5.558e^-7	0.001	INTERGENIC
2R	6844647	2R_6844647_SNP [dm3] 2R_10957142_SNP [dm6]	G	C	5.561e^-7	0.001	INTERGENIC
2L	9903329	2L_9903329_SNP [dm3] 2L_9903329_SNP [dm6]	T	A	5.570e^-7	0.001	UTR_3_PRIME CG13124 UPSTREAM Muc30E DOWNSTREAM CG13124
3L	2566283	3L_2566283_SNP [dm3] 3L_2566283_SNP [dm6]	T	A	5.639e^-7	0.001	SYNONYMOUS_CODING msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16755681	2R_16755681_SNP [dm3] 2R_20868176_SNP [dm6]	C	T	5.691e^-7	0.001	DOWNSTREAM IM4 INTERGENIC
3L	11489346	3L_11489346_SNP [dm3] 3L_11496246_SNP [dm6]	T	C	5.738e^-7	0.001	UTR_3_PRIME chrb
2R	16101673	2R_16101673_SNP [dm3] 2R_20214168_SNP [dm6]	A	G	5.849e^-7	0.001	INTERGENIC
3L	5466818	3L_5466818_SNP [dm3] 3L_5473718_SNP [dm6]	G	A	5.860e^-7	0.001	INTERGENIC
2R	4952299	2R_4952299_SNP [dm3] 2R_9064794_SNP [dm6]	G	C	5.946e^-7	0.001	INTRON ana	regulatory region REDfly_CRMs
2L	13629661	2L_13629661_SNP [dm3] 2L_13629661_SNP [dm6]	A	G	5.958e^-7	0.001	INTRON kuz
X	8732971	X_8732971_SNP [dm3] X_8838938_SNP [dm6]	T	G	6.089e^-7	0.001	INTRON CG12075	TF binding site mE1_TFBS_HSA
2L	2530313	2L_2530313_SNP [dm3] 2L_2530313_SNP [dm6]	C	A	6.123e^-7	0.001	INTERGENIC
2R	12148260	2R_12148260_SNP [dm3] 2R_16260755_SNP [dm6]	T	A	6.159e^-7	0.001	UPSTREAM CngA INTERGENIC
3L	10925840	3L_10925840_SNP [dm3] 3L_10932740_SNP [dm6]	G	A	6.243e^-7	0.001	INTERGENIC
3L	10925853	3L_10925853_SNP [dm3] 3L_10932753_SNP [dm6]	T	C	6.243e^-7	0.001	INTERGENIC
3L	10925857	3L_10925857_SNP [dm3] 3L_10932757_SNP [dm6]	C	T	6.243e^-7	0.001	INTERGENIC
3L	15599738	3L_15599738_INS [dm3] 3L_15606638_INS [dm6]	T	TT	6.271e^-7	0.001	INTRON RhoGAP71E
2L	12474953	2L_12474953_SNP [dm3] 2L_12474953_SNP [dm6]	T	G	6.288e^-7	0.001	INTRON bun
3L	10925924	3L_10925924_DEL [dm3] 3L_10932824_DEL [dm6]	TATATATATCTAGAA...	T	6.352e^-7	0.001	INTERGENIC
3R	11000450	3R_11000450_SNP [dm3] 3R_15174728_SNP [dm6]	T	C	6.352e^-7	0.001	DOWNSTREAM Mf INTRON Mf & 1 other
2R	19370148	2R_19370148_SNP [dm3] 2R_23482625_SNP [dm6]	G	A	6.353e^-7	0.001	INTRON CG43795
2L	5998613	2L_5998613_SNP [dm3] 2L_5998613_SNP [dm6]	G	A	6.355e^-7	0.001	UPSTREAM lid INTRON lid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11185202	2L_11185202_SNP [dm3] 2L_11185202_SNP [dm6]	A	G	6.362e^-7	0.001	INTRON Ca-beta	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens

By genomic position
Variant impact
Gene name

Microbiota_OTU031 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results