DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.556e^-10)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.01371

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	2.8038	0.094
In_3R_P	6.5431	0.0379

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2620 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	19197180	X_19197180_SNP [dm3] X_19303147_SNP [dm6]	A	T	7.891e^-9	0.005	INTRON CG8051
X	19197185	X_19197185_SNP [dm3] X_19303152_SNP [dm6]	G	C	7.891e^-9	0.005	INTRON CG8051
X	19197275	X_19197275_DEL [dm3] X_19303242_DEL [dm6]	GTAA	G	7.891e^-9	0.005	INTRON CG8051
X	19197213	X_19197213_SNP [dm3] X_19303180_SNP [dm6]	T	A	1.068e^-8	0.005	INTRON CG8051
X	9271054	X_9271054_SNP [dm3] X_9377021_SNP [dm6]	A	T	6.071e^-8	0.023	INTRON mgl
3L	7390249	3L_7390249_SNP [dm3] 3L_7397149_SNP [dm6]	A	C	1.234e^-7	0.033	NON_SYNONYMOUS_CODING CG32379
3L	7390266	3L_7390266_SNP [dm3] 3L_7397166_SNP [dm6]	A	G	1.234e^-7	0.033	NON_SYNONYMOUS_CODING CG32379
2L	2965886	2L_2965886_SNP [dm3] 2L_2965886_SNP [dm6]	A	G	2.150e^-7	0.045	UTR_3_PRIME Rbp9
2L	2265624	2L_2265624_SNP [dm3] 2L_2265624_SNP [dm6]	C	T	2.174e^-7	0.045	UPSTREAM CG34049 INTERGENIC
3L	13518121	3L_13518121_DEL [dm3] 3L_13525021_DEL [dm6]	TGGTT	T	2.597e^-7	0.047	UTR_3_PRIME bru-3
3L	7392890	3L_7392890_SNP [dm3] 3L_7399790_SNP [dm6]	C	T	2.807e^-7	0.047	UTR_3_PRIME CG8562 UPSTREAM CG18417
3L	11418611	3L_11418611_SNP [dm3] 3L_11425511_SNP [dm6]	C	A	3.000e^-7	0.047	SYNONYMOUS_CODING CG7560	TF binding site mE1_TFBS_cad
2R	18474638	2R_18474638_SNP [dm3] 2R_22587133_SNP [dm6]	T	C	4.071e^-7	0.058	INTRON dnr1
X	1380440	X_1380440_SNP [dm3] X_1486407_SNP [dm6]	C	T	4.853e^-7	0.06	UTR_3_PRIME Nmdar2 INTRON inc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9344621	2L_9344621_SNP [dm3] 2L_9344621_SNP [dm6]	G	A	4.865e^-7	0.06	UTR_3_PRIME CG3748 DOWNSTREAM CG3748
3L	10221419	3L_10221419_SNP [dm3] 3L_10228319_SNP [dm6]	G	A	6.760e^-7	0.07	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	5388358	3L_5388358_SNP [dm3] 3L_5395258_SNP [dm6]	T	C	6.767e^-7	0.07	INTERGENIC
X	9658116	X_9658116_SNP [dm3] X_9764083_SNP [dm6]	C	A	6.856e^-7	0.07	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	7050133	3L_7050133_SNP [dm3] 3L_7057033_SNP [dm6]	G	C	7.164e^-7	0.07	INTERGENIC
X	19197897	X_19197897_SNP [dm3] X_19303864_SNP [dm6]	T	G	9.490e^-7	0.082	SYNONYMOUS_CODING CG8051
3L	3279039	3L_3279039_SNP [dm3] 3L_3279039_SNP [dm6]	G	A	9.698e^-7	0.082	INTERGENIC
2L	15996764	2L_15996764_SNP [dm3] 2L_15996764_SNP [dm6]	T	G	9.698e^-7	0.082	INTERGENIC
3L	12758371	3L_12758371_SNP [dm3] 3L_12765271_SNP [dm6]	C	G	1.064e^-6	0.086	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_cad
2L	7552018	2L_7552018_DEL [dm3] 2L_7552018_DEL [dm6]	TCCCAAG	T	1.334e^-6	0.092	INTRON RapGAP1
2R	20684519	2R_20684519_SNP [dm3] 2R_24796996_SNP [dm6]	G	A	1.347e^-6	0.092	SYNONYMOUS_CODING Orc4 UPSTREAM CG12849	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20684606	2R_20684606_SNP [dm3] 2R_24797083_SNP [dm6]	T	C	1.347e^-6	0.092	UPSTREAM CG12849 INTRON Orc4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20684898	2R_20684898_SNP [dm3] 2R_24797375_SNP [dm6]	A	T	1.347e^-6	0.092	UTR_5_PRIME Orc4 UPSTREAM CG12849	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3L	7392894	3L_7392894_SNP [dm3] 3L_7399794_SNP [dm6]	A	C	1.387e^-6	0.092	UTR_3_PRIME CG8562 UPSTREAM CG18417
X	14802854	X_14802854_SNP [dm3] X_14908821_SNP [dm6]	A	G	1.621e^-6	0.098	SYNONYMOUS_CODING CG9509 INTRON Flo2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17010742	3R_17010742_SNP [dm3] 3R_21185020_SNP [dm6]	T	G	1.660e^-6	0.098	UTR_5_PRIME SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
X	15217450	X_15217450_SNP [dm3] X_15323417_SNP [dm6]	T	G	1.683e^-6	0.098	UPSTREAM Top1 INTRON Top1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6837443	3L_6837443_SNP [dm3] 3L_6844343_SNP [dm6]	G	T	1.683e^-6	0.098	INTERGENIC
2R	1635175	2R_1635175_SNP [dm3] 2R_5747670_SNP [dm6]	T	A	1.760e^-6	0.099	INTERGENIC	TF binding site mE1_TFBS_cad
3L	7392849	3L_7392849_DEL [dm3] 3L_7399749_DEL [dm6]	CAC	C	1.966e^-6	0.099	UTR_3_PRIME CG8562 UPSTREAM CG18417
3L	3279025	3L_3279025_SNP [dm3] 3L_3279025_SNP [dm6]	C	A	2.048e^-6	0.099	INTERGENIC
X	6664816	X_6664816_SNP [dm3] X_6770783_SNP [dm6]	A	G	2.061e^-6	0.099	UPSTREAM COQ7 DOWNSTREAM shf & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
2L	1544388	2L_1544388_SNP [dm3] 2L_1544388_SNP [dm6]	A	G	2.098e^-6	0.099	INTERGENIC
3L	7392844	3L_7392844_SNP [dm3] 3L_7399744_SNP [dm6]	A	G	2.117e^-6	0.099	UTR_3_PRIME CG8562 UPSTREAM CG18417
2R	7297083	2R_7297083_SNP [dm3] 2R_11409578_SNP [dm6]	C	A	2.156e^-6	0.099	UPSTREAM CG30026 DOWNSTREAM CG34054 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	2572543	2L_2572543_SNP [dm3] 2L_2572543_SNP [dm6]	A	C	2.168e^-6	0.099	SYNONYMOUS_CODING Cyp309a2 DOWNSTREAM Rad1 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	9683460	2R_9683460_SNP [dm3] 2R_13795955_SNP [dm6]	T	A	2.226e^-6	0.099	INTRON Cpr50Cb
2R	9683472	2R_9683472_SNP [dm3] 2R_13795967_SNP [dm6]	C	A	2.226e^-6	0.099	INTRON Cpr50Cb
2L	2965922	2L_2965922_SNP [dm3] 2L_2965922_SNP [dm6]	T	C	2.359e^-6	0.099	UTR_3_PRIME Rbp9
3R	7739054	3R_7739054_SNP [dm3] 3R_11913332_SNP [dm6]	G	T	2.537e^-6	0.099	INTRON Cad87A
X	7115622	X_7115622_SNP [dm3] X_7221589_SNP [dm6]	G	T	2.578e^-6	0.099	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7115758	X_7115758_SNP [dm3] X_7221725_SNP [dm6]	G	A	2.578e^-6	0.099	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7115780	X_7115780_SNP [dm3] X_7221747_SNP [dm6]	G	A	2.578e^-6	0.099	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7115786	X_7115786_SNP [dm3] X_7221753_SNP [dm6]	C	A	2.578e^-6	0.099	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6803228	2R_6803228_SNP [dm3] 2R_10915723_SNP [dm6]	G	C	2.758e^-6	0.099	INTERGENIC
2R	14705610	2R_14705610_MNP [dm3] 2R_18818105_MNP [dm6]	TAG	ATT	2.772e^-6	0.099	INTERGENIC
3L	6837432	3L_6837432_SNP [dm3] 3L_6844332_SNP [dm6]	G	T	2.862e^-6	0.099	INTERGENIC
2R	18476522	2R_18476522_SNP [dm3] 2R_22589017_SNP [dm6]	C	T	2.904e^-6	0.099	INTRON dnr1	TF binding site mE1_TFBS_inv
3L	2083454	3L_2083454_SNP [dm3] 3L_2083454_SNP [dm6]	C	T	2.989e^-6	0.099	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA
2L	4294740	2L_4294740_SNP [dm3] 2L_4294740_SNP [dm6]	G	C	3.074e^-6	0.099	INTRON tutl	TF binding site mE1_TFBS_chinmo
3L	2891148	3L_2891148_SNP [dm3] 3L_2891148_SNP [dm6]	C	T	3.148e^-6	0.099	INTRON spz5
2L	16409030	2L_16409030_SNP [dm3] 2L_16409030_SNP [dm6]	A	G	3.160e^-6	0.099	INTRON CG5888
2L	1586943	2L_1586943_SNP [dm3] 2L_1586943_SNP [dm6]	G	A	3.165e^-6	0.099	SYNONYMOUS_CODING CG10869 INTRON haf
3L	11434438	3L_11434438_SNP [dm3] 3L_11441338_SNP [dm6]	C	A	3.213e^-6	0.099	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	8394832	3L_8394832_SNP [dm3] 3L_8401732_SNP [dm6]	C	T	3.374e^-6	0.099	SYNONYMOUS_CODING CG7120 DOWNSTREAM mkg-p & 1 other	TF binding site mE1_TFBS_cad
2R	14705596	2R_14705596_SNP [dm3] 2R_18818091_SNP [dm6]	A	C	3.398e^-6	0.099	INTERGENIC
2R	14705598	2R_14705598_DEL [dm3] 2R_18818093_DEL [dm6]	TA	T	3.398e^-6	0.099	INTERGENIC
2R	14705604	2R_14705604_DEL [dm3] 2R_18818099_DEL [dm6]	GTG	A	3.398e^-6	0.099	INTERGENIC
3L	8046491	3L_8046491_SNP [dm3] 3L_8053391_SNP [dm6]	T	C	3.435e^-6	0.099	UTR_3_PRIME nmo DOWNSTREAM nmo & 1 other
2R	6546411	2R_6546411_SNP [dm3] 2R_10658906_SNP [dm6]	T	G	3.442e^-6	0.099	INTERGENIC
2R	14842499	2R_14842499_SNP [dm3] 2R_18954994_SNP [dm6]	A	T	3.442e^-6	0.099	UTR_5_PRIME sano
2L	14565272	2L_14565272_SNP [dm3] 2L_14565272_SNP [dm6]	G	A	3.584e^-6	0.101	INTERGENIC
X	4614645	X_4614645_SNP [dm3] X_4720612_SNP [dm6]	T	A	3.760e^-6	0.104	INTRON Proc-R
2L	1159554	2L_1159554_SNP [dm3] 2L_1159554_SNP [dm6]	T	A	3.993e^-6	0.109	UPSTREAM CR43767 DOWNSTREAM CG5080 INTRON Tango14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6665069	X_6665069_SNP [dm3] X_6771036_SNP [dm6]	T	C	4.067e^-6	0.11	UPSTREAM COQ7 DOWNSTREAM shf & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
3L	11418594	3L_11418594_SNP [dm3] 3L_11425494_SNP [dm6]	A	C	4.180e^-6	0.111	NON_SYNONYMOUS_CODING CG7560	TF binding site mE1_TFBS_cad
3L	3280444	3L_3280444_SNP [dm3] 3L_3280444_SNP [dm6]	A	G	4.273e^-6	0.112	START_GAINED CG12017 UTR_5_PRIME CG12017
3L	8155849	3L_8155849_SNP [dm3] 3L_8162749_SNP [dm6]	A	T	4.371e^-6	0.112	INTRON CG13675
3L	8455475	3L_8455475_SNP [dm3] 3L_8462375_SNP [dm6]	A	T	4.448e^-6	0.112	INTRON Gug	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2581125	2R_2581125_SNP [dm3] 2R_6693620_SNP [dm6]	C	G	4.448e^-6	0.112	NON_SYNONYMOUS_CODING CG3270 DOWNSTREAM CG9422	TF binding site mE1_TFBS_chinmo
3L	7392852	3L_7392852_SNP [dm3] 3L_7399752_SNP [dm6]	A	T	4.592e^-6	0.114	UTR_3_PRIME CG8562 UPSTREAM CG18417
3L	4133221	3L_4133221_INS [dm3] 3L_4133221_INS [dm6]	A	ATA	4.930e^-6	0.12	INTRON ens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2265654	2L_2265654_SNP [dm3] 2L_2265654_SNP [dm6]	C	T	4.986e^-6	0.12	UPSTREAM CG34049 INTERGENIC
3L	15834680	3L_15834680_SNP [dm3] 3L_15841580_SNP [dm6]	C	T	5.054e^-6	0.12	INTRON CG32150
2R	14009794	2R_14009794_SNP [dm3] 2R_18122289_SNP [dm6]	G	A	5.095e^-6	0.12	SYNONYMOUS_CODING stau	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	20587062	3L_20587062_SNP [dm3] 3L_20593962_SNP [dm6]	T	C	5.241e^-6	0.122	INTERGENIC
3R	26553502	3R_26553502_SNP [dm3] 3R_30727780_SNP [dm6]	G	T	5.464e^-6	0.126	UTR_3_PRIME CG1340	TF binding site mE1_TFBS_cad
X	1983611	X_1983611_SNP [dm3] X_2089578_SNP [dm6]	G	A	5.586e^-6	0.127	UTR_5_PRIME Unc-76 INTRON Unc-76	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14905471	2R_14905471_SNP [dm3] 2R_19017966_SNP [dm6]	G	A	5.758e^-6	0.129	INTERGENIC
2L	11192164	2L_11192164_SNP [dm3] 2L_11192164_SNP [dm6]	A	G	5.847e^-6	0.13	INTRON Ca-beta
2L	8340949	2L_8340949_SNP [dm3] 2L_8340949_SNP [dm6]	T	C	5.972e^-6	0.13	SYNONYMOUS_CODING CG14274
3L	5388170	3L_5388170_SNP [dm3] 3L_5395070_SNP [dm6]	A	G	6.056e^-6	0.13	INTERGENIC
2L	7714172	2L_7714172_SNP [dm3] 2L_7714172_SNP [dm6]	A	G	6.057e^-6	0.13	SYNONYMOUS_CODING CG33296 DOWNSTREAM Ntl
3R	17082061	3R_17082061_SNP [dm3] 3R_21256339_SNP [dm6]	C	G	6.177e^-6	0.131	INTRON ETHR
2L	9344630	2L_9344630_SNP [dm3] 2L_9344630_SNP [dm6]	G	T	6.540e^-6	0.134	UTR_3_PRIME CG3748 DOWNSTREAM CG3748
2L	9344639	2L_9344639_SNP [dm3] 2L_9344639_SNP [dm6]	A	C	6.540e^-6	0.134	UTR_3_PRIME CG3748 DOWNSTREAM CG3748
3L	15239122	3L_15239122_SNP [dm3] 3L_15246022_SNP [dm6]	C	T	6.574e^-6	0.134	INTERGENIC
3L	7389703	3L_7389703_SNP [dm3] 3L_7396603_SNP [dm6]	A	C	6.857e^-6	0.137	SYNONYMOUS_CODING CG32379 DOWNSTREAM CG8563	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8000954	2L_8000954_SNP [dm3] 2L_8000954_SNP [dm6]	G	A	6.884e^-6	0.137	INTRON Wwox
3L	2599006	3L_2599006_SNP [dm3] 3L_2599006_SNP [dm6]	T	G	6.907e^-6	0.137	SYNONYMOUS_CODING CG12182 UTR_5_PRIME CG12182 UPSTREAM CG16985	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
2L	11192334	2L_11192334_SNP [dm3] 2L_11192334_SNP [dm6]	T	A	7.123e^-6	0.139	INTRON Ca-beta
2L	7508200	2L_7508200_SNP [dm3] 2L_7508200_SNP [dm6]	A	T	7.212e^-6	0.139	INTRON RapGAP1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	1904100	3L_1904100_SNP [dm3] 3L_1904100_SNP [dm6]	C	T	7.272e^-6	0.139	INTRON CG1887
2L	13030284	2L_13030284_SNP [dm3] 2L_13030284_SNP [dm6]	C	T	7.348e^-6	0.14	SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7289524	2L_7289524_SNP [dm3] 2L_7289524_SNP [dm6]	T	A	7.476e^-6	0.14	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15057174	3R_15057174_SNP [dm3] 3R_19231452_SNP [dm6]	G	A	7.539e^-6	0.14	SYNONYMOUS_CODING unc79 DOWNSTREAM CG3773	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1111434	2R_1111434_SNP [dm3] 2R_5223929_SNP [dm6]	G	C	7.830e^-6	0.144	INTRON Nipped-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3L	12681799	3L_12681799_SNP [dm3] 3L_12688699_SNP [dm6]	A	G	7.969e^-6	0.145	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13929687	X_13929687_SNP [dm3] X_14035654_SNP [dm6]	C	T	8.409e^-6	0.15	INTERGENIC
2R	14705614	2R_14705614_SNP [dm3] 2R_18818109_SNP [dm6]	C	A	8.490e^-6	0.15	INTERGENIC
2R	14705615	2R_14705615_SNP [dm3] 2R_18818110_SNP [dm6]	A	T	8.490e^-6	0.15	INTERGENIC
2R	2475968	2R_2475968_SNP [dm3] 2R_6588463_SNP [dm6]	G	T	8.768e^-6	0.153	INTRON jing
X	15234620	X_15234620_SNP [dm3] X_15340587_SNP [dm6]	A	G	8.792e^-6	0.153	NON_SYNONYMOUS_CODING CG9123 DOWNSTREAM HDAC6
3L	7501123	3L_7501123_SNP [dm3] 3L_7508023_SNP [dm6]	C	T	9.013e^-6	0.155	INTERGENIC
2R	14705398	2R_14705398_SNP [dm3] 2R_18817893_SNP [dm6]	G	T	9.170e^-6	0.157	INTERGENIC
3L	6837494	3L_6837494_SNP [dm3] 3L_6844394_SNP [dm6]	T	G	9.411e^-6	0.159	INTERGENIC
3R	7739187	3R_7739187_SNP [dm3] 3R_11913465_SNP [dm6]	G	T	9.698e^-6	0.162	INTRON Cad87A
2R	6803222	2R_6803222_SNP [dm3] 2R_10915717_SNP [dm6]	C	G	9.725e^-6	0.162	INTERGENIC
2L	6823318	2L_6823318_SNP [dm3] 2L_6823318_SNP [dm6]	T	A	1.003e^-5	0.164	INTRON sens-2
X	3921063	X_3921063_SNP [dm3] X_4027030_SNP [dm6]	T	C	1.020e^-5	0.164	INTERGENIC
2L	14171186	2L_14171186_SNP [dm3] 2L_14171186_SNP [dm6]	A	G	1.022e^-5	0.164	INTRON CG43333
X	2433286	X_2433286_SNP [dm3] X_2539253_SNP [dm6]	T	C	1.026e^-5	0.164	INTRON trol
2L	2571624	2L_2571624_SNP [dm3] 2L_2571624_SNP [dm6]	T	A	1.032e^-5	0.164	INTRON Cyp309a2	TF binding site mE1_TFBS_cad
2R	15753102	2R_15753102_SNP [dm3] 2R_19865597_SNP [dm6]	A	G	1.041e^-5	0.164	INTRON Obp56i
3L	7203638	3L_7203638_SNP [dm3] 3L_7210538_SNP [dm6]	T	A	1.066e^-5	0.165	INTERGENIC
2L	9199266	2L_9199266_SNP [dm3] 2L_9199266_SNP [dm6]	A	G	1.077e^-5	0.165	INTRON tai
X	10720250	X_10720250_SNP [dm3] X_10826217_SNP [dm6]	A	G	1.091e^-5	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	11961384	3L_11961384_SNP [dm3] 3L_11968284_SNP [dm6]	A	T	1.095e^-5	0.165	NON_SYNONYMOUS_CODING Muc68E	TF binding site mE1_TFBS_sens
2L	5267545	2L_5267545_SNP [dm3] 2L_5267545_SNP [dm6]	G	A	1.096e^-5	0.165	SYNONYMOUS_CODING Cyp4ac2 UPSTREAM Cyp4ac3 INTRON tkv
X	15227465	X_15227465_SNP [dm3] X_15333432_SNP [dm6]	A	T	1.099e^-5	0.165	UTR_5_PRIME HDAC6 UPSTREAM CG9114 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	11304890	3L_11304890_SNP [dm3] 3L_11311790_SNP [dm6]	A	G	1.109e^-5	0.165	START_GAINED CG7573 UTR_5_PRIME CG7573
X	3753413	X_3753413_SNP [dm3] X_3859380_SNP [dm6]	A	T	1.157e^-5	0.171	EXON roX1
3L	10982212	3L_10982212_SNP [dm3] 3L_10989112_SNP [dm6]	A	T	1.192e^-5	0.173	INTRON klu
2R	6803224	2R_6803224_SNP [dm3] 2R_10915719_SNP [dm6]	T	C	1.194e^-5	0.173	INTERGENIC
3R	17009847	3R_17009847_SNP [dm3] 3R_21184125_SNP [dm6]	A	T	1.199e^-5	0.173	INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19728303	3R_19728303_SNP [dm3] 3R_23902581_SNP [dm6]	C	A	1.207e^-5	0.173	INTRON sba
3L	12265911	3L_12265911_SNP [dm3] 3L_12272811_SNP [dm6]	C	T	1.218e^-5	0.173	NON_SYNONYMOUS_CODING CG4300
2L	13459780	2L_13459780_SNP [dm3] 2L_13459780_SNP [dm6]	C	T	1.236e^-5	0.174	START_GAINED CG42810 UTR_5_PRIME CG42810 INTRON CG42784
2L	7552293	2L_7552293_SNP [dm3] 2L_7552293_SNP [dm6]	G	A	1.245e^-5	0.174	INTRON RapGAP1
3L	12541422	3L_12541422_SNP [dm3] 3L_12548322_SNP [dm6]	G	T	1.277e^-5	0.177	INTRON sowah
3L	2835602	3L_2835602_SNP [dm3] 3L_2835602_SNP [dm6]	C	A	1.308e^-5	0.177	INTRON CG43444
2L	7551992	2L_7551992_SNP [dm3] 2L_7551992_SNP [dm6]	T	C	1.334e^-5	0.177	INTRON RapGAP1
2L	13413418	2L_13413418_SNP [dm3] 2L_13413418_SNP [dm6]	T	A	1.337e^-5	0.177	UTR_3_PRIME CG16848 DOWNSTREAM CG16956	TF binding site mE1_TFBS_cad
2R	16235907	2R_16235907_SNP [dm3] 2R_20348402_SNP [dm6]	A	T	1.341e^-5	0.177	DOWNSTREAM CG16741 INTERGENIC
2R	16235941	2R_16235941_SNP [dm3] 2R_20348436_SNP [dm6]	C	T	1.341e^-5	0.177	DOWNSTREAM CG16741 INTERGENIC
2L	5063729	2L_5063729_SNP [dm3] 2L_5063729_SNP [dm6]	T	C	1.341e^-5	0.177	UPSTREAM qtc & 1 other INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7552309	2L_7552309_SNP [dm3] 2L_7552309_SNP [dm6]	A	G	1.346e^-5	0.177	INTRON RapGAP1
2L	8128514	2L_8128514_SNP [dm3] 2L_8128514_SNP [dm6]	C	G	1.361e^-5	0.177	INTRON CG8668
3L	7203621	3L_7203621_SNP [dm3] 3L_7210521_SNP [dm6]	C	T	1.367e^-5	0.177	INTERGENIC
2L	9657181	2L_9657181_SNP [dm3] 2L_9657181_SNP [dm6]	G	T	1.369e^-5	0.177	SYNONYMOUS_CODING CG33299
3L	1002459	3L_1002459_SNP [dm3] 3L_1002459_SNP [dm6]	T	C	1.439e^-5	0.181	INTRON trio
3L	3277237	3L_3277237_SNP [dm3] 3L_3277237_SNP [dm6]	A	C	1.439e^-5	0.181	DOWNSTREAM CG14960 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	3277253	3L_3277253_SNP [dm3] 3L_3277253_SNP [dm6]	G	A	1.439e^-5	0.181	DOWNSTREAM CG14960 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	17432136	3L_17432136_SNP [dm3] 3L_17439036_SNP [dm6]	A	G	1.446e^-5	0.181	UPSTREAM CG18265 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
4	428402	4_428402_SNP [dm3] 4_407776_SNP [dm6]	C	T	1.449e^-5	0.181	INTERGENIC	transposable element FlyBase
2L	7552347	2L_7552347_SNP [dm3] 2L_7552347_SNP [dm6]	T	A	1.472e^-5	0.183	INTRON RapGAP1
2L	6029317	2L_6029317_SNP [dm3] 2L_6029317_SNP [dm6]	A	G	1.492e^-5	0.184	INTRON CG9109
2R	7367559	2R_7367559_SNP [dm3] 2R_11480054_SNP [dm6]	T	C	1.517e^-5	0.184	INTRON inv
2L	1930974	2L_1930974_DEL [dm3] 2L_1930974_DEL [dm6]	GTTTTG	G	1.536e^-5	0.184	INTRON CG7337
X	8471345	X_8471345_SNP [dm3] X_8577312_SNP [dm6]	C	T	1.536e^-5	0.184	INTRON CG12065
X	8471356	X_8471356_SNP [dm3] X_8577323_SNP [dm6]	A	T	1.536e^-5	0.184	INTRON CG12065
3R	27132604	3R_27132604_SNP [dm3] 3R_31306882_SNP [dm6]	G	A	1.556e^-5	0.186	INTERGENIC
2R	19183459	2R_19183459_SNP [dm3] 2R_23295936_SNP [dm6]	T	A	1.577e^-5	0.186	INTERGENIC
2R	7288152	2R_7288152_DEL [dm3] 2R_11400647_DEL [dm6]	AA	A	1.589e^-5	0.186	UPSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	7288168	2R_7288168_SNP [dm3] 2R_11400663_SNP [dm6]	C	T	1.589e^-5	0.186	UPSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
X	6440342	X_6440342_SNP [dm3] X_6546309_SNP [dm6]	T	C	1.603e^-5	0.186	UTR_5_PRIME CG34417 INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7552228	2L_7552228_SNP [dm3] 2L_7552228_SNP [dm6]	C	T	1.612e^-5	0.186	INTRON RapGAP1
2L	7416558	2L_7416558_SNP [dm3] 2L_7416558_SNP [dm6]	T	A	1.642e^-5	0.189	INTRON chm
X	15234608	X_15234608_DEL [dm3] X_15340575_DEL [dm6]	TGCTCGCGCT	T	1.658e^-5	0.189	CODON_DELETION CG9123 DOWNSTREAM HDAC6
3L	4133373	3L_4133373_SNP [dm3] 3L_4133373_SNP [dm6]	G	T	1.785e^-5	0.202	INTRON ens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1002619	3L_1002619_SNP [dm3] 3L_1002619_SNP [dm6]	A	C	1.792e^-5	0.202	INTRON trio
2R	2680975	2R_2680975_SNP [dm3] 2R_6793470_SNP [dm6]	G	T	1.848e^-5	0.205	INTRON Epac
X	8086288	X_8086288_SNP [dm3] X_8192255_SNP [dm6]	T	A	1.850e^-5	0.205	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
X	16700641	X_16700641_SNP [dm3] X_16806608_SNP [dm6]	A	G	1.854e^-5	0.205	SPLICE_SITE_REGION CR44053 DOWNSTREAM CG13005 INTRON ppk28 EXON CR44053
3L	7100312	3L_7100312_SNP [dm3] 3L_7107212_SNP [dm6]	C	G	1.878e^-5	0.207	INTRON form3
3L	12303370	3L_12303370_SNP [dm3] 3L_12310270_SNP [dm6]	C	A	1.891e^-5	0.207	UPSTREAM CG44355 INTERGENIC
4	503111	4_503111_SNP [dm3] 4_482485_SNP [dm6]	T	C	1.905e^-5	0.207	SPLICE_SITE_REGION Asator START_GAINED Asator UTR_5_PRIME Asator UPSTREAM Asator INTRON Asator	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	6966477	2R_6966477_SNP [dm3] 2R_11078972_SNP [dm6]	C	T	1.943e^-5	0.21	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19517979	3L_19517979_SNP [dm3] 3L_19524879_SNP [dm6]	T	A	1.958e^-5	0.21	INTRON Cpr76Bc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	25451499	3R_25451499_SNP [dm3] 3R_29625777_SNP [dm6]	A	G	1.981e^-5	0.21	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	19197188	X_19197188_SNP [dm3] X_19303155_SNP [dm6]	T	C	1.994e^-5	0.21	INTRON CG8051
X	19197226	X_19197226_SNP [dm3] X_19303193_SNP [dm6]	C	T	1.994e^-5	0.21	INTRON CG8051
X	19197438	X_19197438_SNP [dm3] X_19303405_SNP [dm6]	C	T	1.994e^-5	0.21	SPLICE_SITE_REGION CG8051 INTRON CG8051
3L	4133165	3L_4133165_SNP [dm3] 3L_4133165_SNP [dm6]	T	G	2.025e^-5	0.211	INTRON ens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	10720018	X_10720018_SNP [dm3] X_10825985_SNP [dm6]	C	G	2.041e^-5	0.211	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	15508219	2L_15508219_SNP [dm3] 2L_15508219_SNP [dm6]	T	C	2.044e^-5	0.211	INTERGENIC
3L	13241773	3L_13241773_SNP [dm3] 3L_13248673_SNP [dm6]	T	A	2.108e^-5	0.216	UTR_5_PRIME CG32119 UPSTREAM tRNA:D2:69F INTRON caps
3L	13182162	3L_13182162_SNP [dm3] 3L_13189062_SNP [dm6]	A	T	2.112e^-5	0.216	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6837490	3L_6837490_INS [dm3] 3L_6844390_INS [dm6]	A	AGT	2.132e^-5	0.217	INTERGENIC
2L	20959262	2L_20959262_SNP [dm3] 2L_20959262_SNP [dm6]	A	T	2.159e^-5	0.217	INTERGENIC
2R	9609942	2R_9609942_SNP [dm3] 2R_13722437_SNP [dm6]	C	T	2.163e^-5	0.217	INTRON fas
3R	4443259	3R_4443259_SNP [dm3] 3R_8617537_SNP [dm6]	C	T	2.165e^-5	0.217	INTRON 5-HT2B
2L	9831723	2L_9831723_SNP [dm3] 2L_9831723_SNP [dm6]	C	T	2.177e^-5	0.217	INTRON nAChRalpha6
X	6664973	X_6664973_SNP [dm3] X_6770940_SNP [dm6]	C	T	2.233e^-5	0.221	UPSTREAM COQ7 DOWNSTREAM shf & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
2L	6801862	2L_6801862_SNP [dm3] 2L_6801862_SNP [dm6]	G	A	2.247e^-5	0.221	UTR_3_PRIME CG17377 UPSTREAM CG17376 INTRON CG17377	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	14350750	2R_14350750_SNP [dm3] 2R_18463245_SNP [dm6]	C	G	2.254e^-5	0.221	INTRON CG30116
X	17423175	X_17423175_SNP [dm3] X_17529142_SNP [dm6]	A	G	2.289e^-5	0.222	INTRON CG43658
3R	23581980	3R_23581980_SNP [dm3] 3R_27756258_SNP [dm6]	G	C	2.291e^-5	0.222	INTERGENIC
2L	1432126	2L_1432126_SNP [dm3] 2L_1432126_SNP [dm6]	T	A	2.307e^-5	0.222	UPSTREAM snRNA:U3:22A INTERGENIC	TF binding site mE1_TFBS_cad
X	19877371	X_19877371_SNP [dm3] X_19983338_SNP [dm6]	C	A	2.323e^-5	0.222	INTERGENIC
2L	20963026	2L_20963026_SNP [dm3] 2L_20963026_SNP [dm6]	A	T	2.330e^-5	0.222	INTERGENIC
3L	11097125	3L_11097125_SNP [dm3] 3L_11104025_SNP [dm6]	C	T	2.361e^-5	0.223	UPSTREAM Elo68alpha & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
X	10721455	X_10721455_SNP [dm3] X_10827422_SNP [dm6]	A	C	2.375e^-5	0.223	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4133158	3L_4133158_SNP [dm3] 3L_4133158_SNP [dm6]	T	A	2.378e^-5	0.223	INTRON ens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	15212262	X_15212262_SNP [dm3] X_15318229_SNP [dm6]	C	T	2.383e^-5	0.223	UTR_3_PRIME gce UPSTREAM CR44961
X	16289928	X_16289928_SNP [dm3] X_16395895_SNP [dm6]	T	C	2.398e^-5	0.223	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
3L	2083346	3L_2083346_SNP [dm3] 3L_2083346_SNP [dm6]	T	G	2.414e^-5	0.223	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA
2L	10074955	2L_10074955_SNP [dm3] 2L_10074955_SNP [dm6]	G	T	2.431e^-5	0.223	INTRON CG44153
3R	15888154	3R_15888154_SNP [dm3] 3R_20062432_SNP [dm6]	G	A	2.447e^-5	0.223	INTERGENIC
X	10720214	X_10720214_SNP [dm3] X_10826181_SNP [dm6]	T	A	2.464e^-5	0.223	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	16235969	2R_16235969_SNP [dm3] 2R_20348464_SNP [dm6]	T	C	2.468e^-5	0.223	DOWNSTREAM CG16741 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10942046	3L_10942046_SNP [dm3] 3L_10948946_SNP [dm6]	T	A	2.476e^-5	0.223	INTERGENIC
2R	14678123	2R_14678123_SNP [dm3] 2R_18790618_SNP [dm6]	A	G	2.481e^-5	0.223	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad
3L	7403072	3L_7403072_SNP [dm3] 3L_7409972_SNP [dm6]	G	T	2.578e^-5	0.227	UPSTREAM CR44525 INTERGENIC
2R	14843464	2R_14843464_SNP [dm3] 2R_18955959_SNP [dm6]	C	A	2.587e^-5	0.227	SYNONYMOUS_CODING sano	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19773950	2R_19773950_SNP [dm3] 2R_23886427_SNP [dm6]	T	A	2.604e^-5	0.227	UPSTREAM CG5597 INTERGENIC
2L	8501820	2L_8501820_DEL [dm3] 2L_8501820_DEL [dm6]	CCCAC	C	2.611e^-5	0.227	INTRON Dh31
3L	6997842	3L_6997842_SNP [dm3] 3L_7004742_SNP [dm6]	T	A	2.615e^-5	0.227	INTRON Mp
X	2429724	X_2429724_SNP [dm3] X_2535691_SNP [dm6]	T	C	2.627e^-5	0.227	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10720043	X_10720043_SNP [dm3] X_10826010_SNP [dm6]	A	G	2.629e^-5	0.227	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	9658120	X_9658120_SNP [dm3] X_9764087_SNP [dm6]	T	C	2.641e^-5	0.227	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	10158333	X_10158333_SNP [dm3] X_10264300_SNP [dm6]	A	G	2.644e^-5	0.227	UTR_3_PRIME CG12643 UPSTREAM Hk	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16750717	2R_16750717_SNP [dm3] 2R_20863212_SNP [dm6]	C	A	2.648e^-5	0.227	UPSTREAM CG15227 INTERGENIC
2R	18456371	2R_18456371_SNP [dm3] 2R_22568866_SNP [dm6]	C	A	2.735e^-5	0.233	INTRON dnr1	TF binding site mE1_TFBS_Trl
3L	15251126	3L_15251126_SNP [dm3] 3L_15258026_SNP [dm6]	C	T	2.759e^-5	0.234	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6837493	3L_6837493_SNP [dm3] 3L_6844393_SNP [dm6]	T	A	2.767e^-5	0.234	INTERGENIC
2L	7702942	2L_7702942_SNP [dm3] 2L_7702942_SNP [dm6]	T	A	2.794e^-5	0.234	UTR_5_PRIME Tep3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	15229540	X_15229540_SNP [dm3] X_15335507_SNP [dm6]	A	G	2.814e^-5	0.234	INTRON HDAC6 EXON CR44998	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13200835	2L_13200835_SNP [dm3] 2L_13200835_SNP [dm6]	T	G	2.849e^-5	0.234	NON_SYNONYMOUS_CODING CG16972	TF binding site mE1_TFBS_cad
X	1234348	X_1234348_SNP [dm3] X_1340315_SNP [dm6]	C	T	2.859e^-5	0.234	INTRON CG11409
3L	1525997	3L_1525997_SNP [dm3] 3L_1525997_SNP [dm6]	A	T	2.927e^-5	0.234	INTRON CG12090
2L	7868831	2L_7868831_SNP [dm3] 2L_7868831_SNP [dm6]	A	C	2.929e^-5	0.234	INTRON Proc
2R	969100	2R_969100_SNP [dm3] 2R_5081595_SNP [dm6]	A	C	2.939e^-5	0.234	DOWNSTREAM CR43360 INTERGENIC	transposable element FlyBase
X	3753448	X_3753448_SNP [dm3] X_3859415_SNP [dm6]	A	T	2.940e^-5	0.234	EXON roX1
X	12379131	X_12379131_SNP [dm3] X_12485098_SNP [dm6]	G	A	2.947e^-5	0.234	INTERGENIC
3R	26334069	3R_26334069_SNP [dm3] 3R_30508347_SNP [dm6]	G	T	2.962e^-5	0.234	SYNONYMOUS_CODING CG34041 DOWNSTREAM CG15539
2R	19183380	2R_19183380_SNP [dm3] 2R_23295857_SNP [dm6]	T	A	2.985e^-5	0.234	INTERGENIC
2R	19183564	2R_19183564_SNP [dm3] 2R_23296041_SNP [dm6]	G	A	2.985e^-5	0.234	INTERGENIC
2L	4244183	2L_4244183_SNP [dm3] 2L_4244183_SNP [dm6]	T	C	2.990e^-5	0.234	INTERGENIC
2L	7508215	2L_7508215_SNP [dm3] 2L_7508215_SNP [dm6]	A	T	3.028e^-5	0.234	INTRON RapGAP1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	20964233	2L_20964233_SNP [dm3] 2L_20964233_SNP [dm6]	T	A	3.031e^-5	0.234	INTERGENIC
3L	2889442	3L_2889442_SNP [dm3] 3L_2889442_SNP [dm6]	C	T	3.050e^-5	0.234	INTRON spz5
3L	991720	3L_991720_SNP [dm3] 3L_991720_SNP [dm6]	C	A	3.052e^-5	0.234	UTR_3_PRIME Glut1 DOWNSTREAM Glut1
3L	15253928	3L_15253928_SNP [dm3] 3L_15260828_SNP [dm6]	G	A	3.057e^-5	0.234	INTERGENIC	TF binding site mE1_TFBS_cad
X	6664866	X_6664866_SNP [dm3] X_6770833_SNP [dm6]	T	C	3.067e^-5	0.234	UPSTREAM COQ7 DOWNSTREAM shf & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
X	6664925	X_6664925_SNP [dm3] X_6770892_SNP [dm6]	T	G	3.067e^-5	0.234	UPSTREAM COQ7 DOWNSTREAM shf & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
X	6664929	X_6664929_SNP [dm3] X_6770896_SNP [dm6]	A	T	3.067e^-5	0.234	UPSTREAM COQ7 DOWNSTREAM shf & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
2R	10251106	2R_10251106_SNP [dm3] 2R_14363601_SNP [dm6]	G	A	3.067e^-5	0.234	SYNONYMOUS_CODING Tfb1 DOWNSTREAM Arc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	1158386	2L_1158386_SNP [dm3] 2L_1158386_SNP [dm6]	G	A	3.073e^-5	0.234	UPSTREAM Tango14 & 1 other DOWNSTREAM CR43767 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6823264	2L_6823264_SNP [dm3] 2L_6823264_SNP [dm6]	A	C	3.084e^-5	0.234	INTRON sens-2	TF binding site mE1_TFBS_cad
X	20761707	X_20761707_SNP [dm3] X_20890680_SNP [dm6]	T	C	3.124e^-5	0.234	INTRON shakB
2R	19261821	2R_19261821_SNP [dm3] 2R_23374298_SNP [dm6]	T	A	3.140e^-5	0.234	SYNONYMOUS_CODING Golgin245	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19261863	2R_19261863_SNP [dm3] 2R_23374340_SNP [dm6]	T	C	3.140e^-5	0.234	SYNONYMOUS_CODING Golgin245	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19261881	2R_19261881_SNP [dm3] 2R_23374358_SNP [dm6]	C	T	3.140e^-5	0.234	SYNONYMOUS_CODING Golgin245	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7277663	3L_7277663_SNP [dm3] 3L_7284563_SNP [dm6]	A	C	3.187e^-5	0.234	INTRON unc-13-4A
3L	15985654	3L_15985654_SNP [dm3] 3L_15992554_SNP [dm6]	C	T	3.196e^-5	0.234	DOWNSTREAM Hip14 & 1 other INTERGENIC
3L	13257458	3L_13257458_SNP [dm3] 3L_13264358_SNP [dm6]	T	C	3.202e^-5	0.234	INTRON caps
X	6264963	X_6264963_SNP [dm3] X_6370930_SNP [dm6]	C	T	3.205e^-5	0.234	DOWNSTREAM PpV & 1 other EXON CR44816
2L	10562290	2L_10562290_SNP [dm3] 2L_10562290_SNP [dm6]	G	A	3.215e^-5	0.234	INTRON Trim9
2R	10433325	2R_10433325_SNP [dm3] 2R_14545820_SNP [dm6]	A	G	3.227e^-5	0.234	INTRON ttv & 1 other
2R	18455329	2R_18455329_SNP [dm3] 2R_22567824_SNP [dm6]	T	C	3.238e^-5	0.234	INTRON dnr1
2R	19404371	2R_19404371_SNP [dm3] 2R_23516848_SNP [dm6]	T	G	3.242e^-5	0.234	INTERGENIC
3L	8507781	3L_8507781_SNP [dm3] 3L_8514681_SNP [dm6]	C	G	3.251e^-5	0.234	INTRON CG6765 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10251028	2R_10251028_SNP [dm3] 2R_14363523_SNP [dm6]	T	C	3.291e^-5	0.234	DOWNSTREAM Arc2 INTRON Tfb1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	17414393	2R_17414393_SNP [dm3] 2R_21526888_SNP [dm6]	T	C	3.318e^-5	0.234	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7714591	3L_7714591_SNP [dm3] 3L_7721491_SNP [dm6]	T	G	3.318e^-5	0.234	DOWNSTREAM CG7457 & 1 other INTRON CG32373	TF binding site mE1_TFBS_inv
X	13273438	X_13273438_SNP [dm3] X_13379405_SNP [dm6]	C	T	3.318e^-5	0.234	DOWNSTREAM Rbp1-like INTRON CG1640
X	20767058	X_20767058_SNP [dm3] X_20896031_SNP [dm6]	G	C	3.318e^-5	0.234	INTRON shakB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20767066	X_20767066_SNP [dm3] X_20896039_SNP [dm6]	G	C	3.318e^-5	0.234	INTRON shakB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15360682	3L_15360682_SNP [dm3] 3L_15367582_SNP [dm6]	G	A	3.326e^-5	0.234	INTERGENIC
3L	4376458	3L_4376458_SNP [dm3] 3L_4376458_SNP [dm6]	T	C	3.339e^-5	0.234	DOWNSTREAM CR44360 INTRON DopEcR
X	15234619	X_15234619_SNP [dm3] X_15340586_SNP [dm6]	C	T	3.341e^-5	0.234	NON_SYNONYMOUS_CODING CG9123 DOWNSTREAM HDAC6
2R	10433491	2R_10433491_SNP [dm3] 2R_14545986_SNP [dm6]	C	T	3.396e^-5	0.237	INTRON ttv & 1 other
3R	26553128	3R_26553128_SNP [dm3] 3R_30727406_SNP [dm6]	C	G	3.420e^-5	0.237	NON_SYNONYMOUS_CODING CG1340	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7276638	2R_7276638_SNP [dm3] 2R_11389133_SNP [dm6]	T	C	3.432e^-5	0.237	UPSTREAM CG30022 INTRON sprt
2R	6873259	2R_6873259_INS [dm3] 2R_10985754_INS [dm6]	C	CGGCC	3.449e^-5	0.238	INTRON luna
2L	8824729	2L_8824729_SNP [dm3] 2L_8824729_SNP [dm6]	G	A	3.511e^-5	0.241	UPSTREAM SoxN INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1960542	2L_1960542_SNP [dm3] 2L_1960542_SNP [dm6]	C	G	3.531e^-5	0.242	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20585874	3L_20585874_SNP [dm3] 3L_20592774_SNP [dm6]	T	C	3.545e^-5	0.242	INTERGENIC
2L	3490484	2L_3490484_SNP [dm3] 2L_3490484_SNP [dm6]	C	A	3.642e^-5	0.247	INTRON CG15414
2L	1158403	2L_1158403_SNP [dm3] 2L_1158403_SNP [dm6]	C	T	3.668e^-5	0.247	UPSTREAM Tango14 & 1 other DOWNSTREAM CR43767 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	3223048	X_3223048_SNP [dm3] X_3329015_SNP [dm6]	G	T	3.699e^-5	0.247	UPSTREAM dnc INTRON CR44886 & 1 other
2L	7510050	2L_7510050_SNP [dm3] 2L_7510050_SNP [dm6]	T	A	3.708e^-5	0.247	INTRON RapGAP1
3L	7812564	3L_7812564_SNP [dm3] 3L_7819464_SNP [dm6]	G	A	3.736e^-5	0.247	INTRON Pdp1
X	13273412	X_13273412_SNP [dm3] X_13379379_SNP [dm6]	T	A	3.761e^-5	0.247	DOWNSTREAM Rbp1-like INTRON CG1640
2L	7093339	2L_7093339_SNP [dm3] 2L_7093339_SNP [dm6]	G	A	3.792e^-5	0.247	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10250859	2R_10250859_SNP [dm3] 2R_14363354_SNP [dm6]	A	G	3.802e^-5	0.247	UTR_5_PRIME Tfb1 DOWNSTREAM Arc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2676116	2L_2676116_SNP [dm3] 2L_2676116_SNP [dm6]	T	C	3.809e^-5	0.247	INTERGENIC
2L	2676117	2L_2676117_SNP [dm3] 2L_2676117_SNP [dm6]	C	T	3.809e^-5	0.247	INTERGENIC
2R	9313261	2R_9313261_SNP [dm3] 2R_13425756_SNP [dm6]	G	A	3.809e^-5	0.247	NON_SYNONYMOUS_CODING CG42321 INTRON CG42321
3L	6616370	3L_6616370_SNP [dm3] 3L_6623270_SNP [dm6]	A	G	3.809e^-5	0.247	UPSTREAM GluRIA INTERGENIC
X	3223156	X_3223156_SNP [dm3] X_3329123_SNP [dm6]	C	T	3.809e^-5	0.247	UPSTREAM dnc INTRON CR44886 & 1 other
3L	16847981	3L_16847981_SNP [dm3] 3L_16854881_SNP [dm6]	A	T	3.819e^-5	0.247	INTRON Rh4 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	2433174	X_2433174_SNP [dm3] X_2539141_SNP [dm6]	C	T	3.825e^-5	0.247	INTRON trol
2L	2299392	2L_2299392_SNP [dm3] 2L_2299392_SNP [dm6]	A	T	3.852e^-5	0.247	UPSTREAM CG31949 INTERGENIC
X	15231245	X_15231245_SNP [dm3] X_15337212_SNP [dm6]	T	C	3.882e^-5	0.247	SYNONYMOUS_CODING HDAC6	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5213562	3L_5213562_SNP [dm3] 3L_5220462_SNP [dm6]	C	T	3.911e^-5	0.247	INTRON shep
3R	10949506	3R_10949506_SNP [dm3] 3R_15123784_SNP [dm6]	G	C	3.946e^-5	0.247	INTRON CG42788
2R	15197872	2R_15197872_SNP [dm3] 2R_19310367_SNP [dm6]	C	T	3.958e^-5	0.247	DOWNSTREAM Rgk1 INTRON EndoB	TF binding site mE1_TFBS_sens
X	6264964	X_6264964_SNP [dm3] X_6370931_SNP [dm6]	A	G	4.003e^-5	0.247	DOWNSTREAM PpV & 1 other EXON CR44816
2L	20959263	2L_20959263_SNP [dm3] 2L_20959263_SNP [dm6]	G	C	4.004e^-5	0.247	INTERGENIC
2L	20959264	2L_20959264_INS [dm3] 2L_20959264_INS [dm6]	A	AA	4.004e^-5	0.247	INTERGENIC
X	4651672	X_4651672_SNP [dm3] X_4757639_SNP [dm6]	T	C	4.018e^-5	0.247	INTERGENIC
3L	7277686	3L_7277686_SNP [dm3] 3L_7284586_SNP [dm6]	T	C	4.049e^-5	0.247	INTRON unc-13-4A	TF binding site mE1_TFBS_cad
2L	11832955	2L_11832955_SNP [dm3] 2L_11832955_SNP [dm6]	C	T	4.075e^-5	0.247	INTRON Pde1c
3R	15058172	3R_15058172_SNP [dm3] 3R_19232450_SNP [dm6]	A	G	4.126e^-5	0.247	SYNONYMOUS_CODING unc79
3L	7020077	3L_7020077_SNP [dm3] 3L_7026977_SNP [dm6]	G	T	4.140e^-5	0.247	UPSTREAM CG17744 INTRON Mp
2R	17340530	2R_17340530_SNP [dm3] 2R_21453025_SNP [dm6]	G	T	4.167e^-5	0.247	INTRON Sdc
2R	10433343	2R_10433343_SNP [dm3] 2R_14545838_SNP [dm6]	A	G	4.181e^-5	0.247	INTRON ttv & 1 other
2L	5467017	2L_5467017_SNP [dm3] 2L_5467017_SNP [dm6]	C	A	4.228e^-5	0.247	UTR_3_PRIME mid DOWNSTREAM mid
2R	12457030	2R_12457030_SNP [dm3] 2R_16569525_SNP [dm6]	C	T	4.279e^-5	0.247	SYNONYMOUS_CODING CG4945 DOWNSTREAM RpS15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2401379	3L_2401379_SNP [dm3] 3L_2401379_SNP [dm6]	G	C	4.303e^-5	0.247	INTRON CG45186
3L	6443611	3L_6443611_SNP [dm3] 3L_6450511_SNP [dm6]	G	A	4.337e^-5	0.247	INTRON CG42747
X	1228561	X_1228561_SNP [dm3] X_1334528_SNP [dm6]	T	G	4.396e^-5	0.247	INTRON CG11409
X	1228778	X_1228778_SNP [dm3] X_1334745_SNP [dm6]	C	T	4.396e^-5	0.247	INTRON CG11409
X	1229585	X_1229585_SNP [dm3] X_1335552_SNP [dm6]	G	A	4.396e^-5	0.247	INTRON CG11409
X	1229636	X_1229636_SNP [dm3] X_1335603_SNP [dm6]	T	A	4.396e^-5	0.247	INTRON CG11409
X	1229704	X_1229704_SNP [dm3] X_1335671_SNP [dm6]	T	G	4.396e^-5	0.247	INTRON CG11409
X	1229847	X_1229847_SNP [dm3] X_1335814_SNP [dm6]	C	G	4.396e^-5	0.247	INTRON CG11409
X	1229879	X_1229879_SNP [dm3] X_1335846_SNP [dm6]	G	A	4.396e^-5	0.247	INTRON CG11409
X	1230493	X_1230493_SNP [dm3] X_1336460_SNP [dm6]	T	C	4.396e^-5	0.247	INTRON CG11409	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	1230558	X_1230558_SNP [dm3] X_1336525_SNP [dm6]	A	T	4.396e^-5	0.247	INTRON CG11409	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	1230629	X_1230629_SNP [dm3] X_1336596_SNP [dm6]	G	T	4.396e^-5	0.247	INTRON CG11409
X	1230641	X_1230641_SNP [dm3] X_1336608_SNP [dm6]	G	T	4.396e^-5	0.247	INTRON CG11409
X	1230647	X_1230647_SNP [dm3] X_1336614_SNP [dm6]	G	T	4.396e^-5	0.247	INTRON CG11409
X	1231801	X_1231801_SNP [dm3] X_1337768_SNP [dm6]	G	A	4.396e^-5	0.247	INTRON CG11409	TF binding site BDTNP1_TFBS_da
X	1232785	X_1232785_SNP [dm3] X_1338752_SNP [dm6]	A	T	4.396e^-5	0.247	UPSTREAM CG11409 INTRON CG11409	TF binding site mE1_TFBS_HSA
X	1234319	X_1234319_SNP [dm3] X_1340286_SNP [dm6]	A	G	4.396e^-5	0.247	INTRON CG11409
X	1234532	X_1234532_SNP [dm3] X_1340499_SNP [dm6]	A	G	4.396e^-5	0.247	INTRON CG11409
X	1234774	X_1234774_SNP [dm3] X_1340741_SNP [dm6]	C	T	4.396e^-5	0.247	INTRON CG11409
X	1234959	X_1234959_SNP [dm3] X_1340926_SNP [dm6]	A	G	4.396e^-5	0.247	INTRON CG11409
X	1235195	X_1235195_SNP [dm3] X_1341162_SNP [dm6]	A	G	4.396e^-5	0.247	UPSTREAM CG11412 INTRON CG11409	TF binding site BDTNP1_TFBS_dl
X	1237379	X_1237379_SNP [dm3] X_1343346_SNP [dm6]	T	C	4.396e^-5	0.247	SYNONYMOUS_CODING CG11412	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	1237626	X_1237626_SNP [dm3] X_1343593_SNP [dm6]	T	C	4.396e^-5	0.247	INTRON CG11412	TF binding site mE1_TFBS_sens
X	1238172	X_1238172_SNP [dm3] X_1344139_SNP [dm6]	A	C	4.396e^-5	0.247	UTR_3_PRIME CG11412 DOWNSTREAM CG11418
3L	19376101	3L_19376101_SNP [dm3] 3L_19383001_SNP [dm6]	T	C	4.397e^-5	0.247	INTRON CG32206
X	21001408	X_21001408_SNP [dm3] X_21130381_SNP [dm6]	G	A	4.400e^-5	0.247	INTRON CG34120	transposable element FlyBase
3R	17093401	3R_17093401_SNP [dm3] 3R_21267679_SNP [dm6]	A	G	4.405e^-5	0.247	SYNONYMOUS_CODING Rab1
2R	16706184	2R_16706184_SNP [dm3] 2R_20818679_SNP [dm6]	T	C	4.424e^-5	0.247	INTERGENIC
2R	18102164	2R_18102164_SNP [dm3] 2R_22214659_SNP [dm6]	T	G	4.432e^-5	0.247	INTRON ari-2	TF binding site BDTNP1_TFBS_dl
2L	10284312	2L_10284312_SNP [dm3] 2L_10284312_SNP [dm6]	G	A	4.457e^-5	0.248	SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4426387	3L_4426387_SNP [dm3] 3L_4426387_SNP [dm6]	G	T	4.489e^-5	0.249	UTR_3_PRIME CG15020
3R	12311174	3R_12311174_SNP [dm3] 3R_16485452_SNP [dm6]	C	T	4.530e^-5	0.25	NON_SYNONYMOUS_CODING Cad89D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6966716	2R_6966716_SNP [dm3] 2R_11079211_SNP [dm6]	G	A	4.548e^-5	0.25	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13207568	2R_13207568_SNP [dm3] 2R_17320063_SNP [dm6]	G	T	4.564e^-5	0.25	INTRON mbl
X	3223041	X_3223041_SNP [dm3] X_3329008_SNP [dm6]	A	C	4.594e^-5	0.251	UPSTREAM dnc INTRON CR44886 & 1 other
2R	12377881	2R_12377881_SNP [dm3] 2R_16490376_SNP [dm6]	A	G	4.671e^-5	0.253	UPSTREAM S-Lap8 INTERGENIC
2R	14678042	2R_14678042_SNP [dm3] 2R_18790537_SNP [dm6]	A	C	4.673e^-5	0.253	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad
2L	5063992	2L_5063992_SNP [dm3] 2L_5063992_SNP [dm6]	A	G	4.691e^-5	0.253	UPSTREAM qtc & 1 other INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14678087	2R_14678087_SNP [dm3] 2R_18790582_SNP [dm6]	T	G	4.706e^-5	0.253	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad
2R	14678138	2R_14678138_SNP [dm3] 2R_18790633_SNP [dm6]	T	A	4.706e^-5	0.253	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad
2R	16750349	2R_16750349_SNP [dm3] 2R_20862844_SNP [dm6]	C	A	4.710e^-5	0.253	UPSTREAM CG15227 INTERGENIC
2L	14171187	2L_14171187_SNP [dm3] 2L_14171187_SNP [dm6]	C	A	4.781e^-5	0.255	INTRON CG43333
X	11369777	X_11369777_SNP [dm3] X_11475744_SNP [dm6]	C	T	4.790e^-5	0.255	INTRON CG43155
X	11369778	X_11369778_SNP [dm3] X_11475745_SNP [dm6]	C	G	4.790e^-5	0.255	INTRON CG43155
3L	989659	3L_989659_SNP [dm3] 3L_989659_SNP [dm6]	C	A	4.796e^-5	0.255	SYNONYMOUS_CODING Glut1 UTR_3_PRIME Glut1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2433200	X_2433200_SNP [dm3] X_2539167_SNP [dm6]	G	A	4.881e^-5	0.257	INTRON trol
2R	18107211	2R_18107211_SNP [dm3] 2R_22219706_SNP [dm6]	A	T	4.889e^-5	0.257	NON_SYNONYMOUS_CODING Oatp58Da	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19773938	2R_19773938_SNP [dm3] 2R_23886415_SNP [dm6]	G	A	4.910e^-5	0.257	UPSTREAM CG5597 INTERGENIC
X	7902335	X_7902335_SNP [dm3] X_8008302_SNP [dm6]	C	T	4.917e^-5	0.257	INTRON Tbh
3R	13133256	3R_13133256_INS [dm3] 3R_17307534_INS [dm6]	G	GCAGCAGCA	4.918e^-5	0.257	INTERGENIC
3L	15278288	3L_15278288_SNP [dm3] 3L_15285188_SNP [dm6]	A	T	4.920e^-5	0.257	INTERGENIC
3R	16230820	3R_16230820_SNP [dm3] 3R_20405098_SNP [dm6]	A	C	4.942e^-5	0.257	INTRON Gfrl
3L	2401302	3L_2401302_DEL [dm3] 3L_2401302_DEL [dm6]	GCGAGTAATCTATTTGGTTG...	G	4.955e^-5	0.257	INTRON CG45186
2L	7707083	2L_7707083_SNP [dm3] 2L_7707083_SNP [dm6]	C	G	4.985e^-5	0.257	SPLICE_SITE_REGION Tep3 INTRON Tep3	TF binding site mE1_TFBS_inv
2L	7707159	2L_7707159_SNP [dm3] 2L_7707159_SNP [dm6]	C	T	4.985e^-5	0.257	SYNONYMOUS_CODING Tep3 DOWNSTREAM CR44990	TF binding site mE1_TFBS_inv
X	1237117	X_1237117_SNP [dm3] X_1343084_SNP [dm6]	G	A	4.998e^-5	0.257	NON_SYNONYMOUS_CODING CG11412	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	17757444	2R_17757444_SNP [dm3] 2R_21869939_SNP [dm6]	G	A	5.011e^-5	0.257	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16089801	2L_16089801_SNP [dm3] 2L_16089801_SNP [dm6]	G	T	5.036e^-5	0.257	INTERGENIC
X	1229995	X_1229995_SNP [dm3] X_1335962_SNP [dm6]	T	C	5.050e^-5	0.257	INTRON CG11409
2L	2724567	2L_2724567_SNP [dm3] 2L_2724567_SNP [dm6]	T	A	5.057e^-5	0.257	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	15839894	3L_15839894_SNP [dm3] 3L_15846794_SNP [dm6]	T	A	5.066e^-5	0.257	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16962959	3L_16962959_INS [dm3] 3L_16969859_INS [dm6]	C	GT	5.066e^-5	0.257	UPSTREAM Exn INTERGENIC
3L	18081775	3L_18081775_SNP [dm3] 3L_18088675_SNP [dm6]	A	T	5.084e^-5	0.257	UTR_3_PRIME CG13698 DOWNSTREAM CG13698
X	19196503	X_19196503_SNP [dm3] X_19302470_SNP [dm6]	T	C	5.094e^-5	0.257	SYNONYMOUS_CODING CG8051 UPSTREAM snmRNA:763	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	11965781	2L_11965781_SNP [dm3] 2L_11965781_SNP [dm6]	G	A	5.104e^-5	0.257	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	3490162	2L_3490162_SNP [dm3] 2L_3490162_SNP [dm6]	C	T	5.187e^-5	0.26	INTRON CG15414
2L	20992769	2L_20992769_SNP [dm3] 2L_20992769_SNP [dm6]	T	G	5.220e^-5	0.26	INTRON CG42238
2L	20992801	2L_20992801_SNP [dm3] 2L_20992801_SNP [dm6]	A	T	5.220e^-5	0.26	INTRON CG42238
3L	7780624	3L_7780624_SNP [dm3] 3L_7787524_SNP [dm6]	A	C	5.235e^-5	0.26	INTRON CG32369
2L	3878387	2L_3878387_SNP [dm3] 2L_3878387_SNP [dm6]	A	G	5.284e^-5	0.262	INTRON capu
3L	23462389	3L_23462389_SNP [dm3] 3L_23469289_SNP [dm6]	G	A	5.340e^-5	0.264	INTERGENIC	transposable element FlyBase
2R	8909662	2R_8909662_DEL [dm3] 2R_13022157_DEL [dm6]	GCCTCATTTCCATTG...	G	5.421e^-5	0.267	INTERGENIC
2R	8909697	2R_8909697_SNP [dm3] 2R_13022192_SNP [dm6]	C	T	5.421e^-5	0.267	INTERGENIC
2L	5656499	2L_5656499_SNP [dm3] 2L_5656499_SNP [dm6]	G	A	5.467e^-5	0.268	INTRON CG31646
X	6544890	X_6544890_SNP [dm3] X_6650857_SNP [dm6]	T	A	5.484e^-5	0.269	UTR_3_PRIME pigs	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14952898	3L_14952898_SNP [dm3] 3L_14959798_SNP [dm6]	T	A	5.509e^-5	0.269	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13238234	X_13238234_SNP [dm3] X_13344201_SNP [dm6]	A	G	5.545e^-5	0.27	DOWNSTREAM CR45708 INTERGENIC
X	15227376	X_15227376_SNP [dm3] X_15333343_SNP [dm6]	G	T	5.576e^-5	0.271	UTR_5_PRIME HDAC6 UPSTREAM CG9114 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18819362	3L_18819362_DEL [dm3] 3L_18826262_DEL [dm6]	ATTGTTGCTG	A	5.602e^-5	0.271	INTRON Cat
3L	18819372	3L_18819372_INS [dm3] 3L_18826272_INS [dm6]	A	ATAGAGCACA	5.602e^-5	0.271	INTRON Cat
X	9648105	X_9648105_SNP [dm3] X_9754072_SNP [dm6]	T	C	5.622e^-5	0.271	SYNONYMOUS_CODING Sp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12136631	2R_12136631_SNP [dm3] 2R_16249126_SNP [dm6]	C	T	5.643e^-5	0.271	INTRON CngA
X	1902151	X_1902151_SNP [dm3] X_2008118_SNP [dm6]	C	G	5.662e^-5	0.272	DOWNSTREAM Hr4 INTRON CG4406
2R	7289177	2R_7289177_SNP [dm3] 2R_11401672_SNP [dm6]	C	A	5.720e^-5	0.272	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	15741169	2L_15741169_SNP [dm3] 2L_15741169_SNP [dm6]	A	G	5.720e^-5	0.272	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11369763	X_11369763_SNP [dm3] X_11475730_SNP [dm6]	T	C	5.725e^-5	0.272	INTRON CG43155
2L	7702695	2L_7702695_SNP [dm3] 2L_7702695_SNP [dm6]	G	C	5.764e^-5	0.272	UPSTREAM Tep3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	26791517	3R_26791517_SNP [dm3] 3R_30965795_SNP [dm6]	A	C	5.782e^-5	0.272	INTERGENIC
2R	1746722	2R_1746722_SNP [dm3] 2R_5859217_SNP [dm6]	G	T	5.795e^-5	0.272	UTR_3_PRIME dpr12
2L	9344774	2L_9344774_SNP [dm3] 2L_9344774_SNP [dm6]	T	A	5.803e^-5	0.272	UTR_3_PRIME CG3748 DOWNSTREAM CG3748
2L	2572330	2L_2572330_SNP [dm3] 2L_2572330_SNP [dm6]	A	G	5.805e^-5	0.272	SYNONYMOUS_CODING Cyp309a2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
X	1154635	X_1154635_DEL [dm3] X_1260602_DEL [dm6]	GTACTCAG	G	5.865e^-5	0.272	INTRON Atf3
X	15670604	X_15670604_SNP [dm3] X_15776571_SNP [dm6]	T	C	5.865e^-5	0.272	NON_SYNONYMOUS_CODING CG43672
X	9137148	X_9137148_SNP [dm3] X_9243115_SNP [dm6]	A	T	5.865e^-5	0.272	UPSTREAM Larp7 INTRON mxc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	8724603	3L_8724603_SNP [dm3] 3L_8731503_SNP [dm6]	C	T	5.878e^-5	0.272	UPSTREAM Cp16 DOWNSTREAM Cp19 INTERGENIC
3R	21644408	3R_21644408_SNP [dm3] 3R_25818686_SNP [dm6]	T	C	5.889e^-5	0.272	INTERGENIC
2R	14462425	2R_14462425_INS [dm3] 2R_18574920_INS [dm6]	G	GG	5.899e^-5	0.272	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20689740	2R_20689740_SNP [dm3] 2R_24802217_SNP [dm6]	C	T	5.900e^-5	0.272	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	20956974	3R_20956974_SNP [dm3] 3R_25131252_SNP [dm6]	G	A	5.927e^-5	0.273	UPSTREAM Bili DOWNSTREAM Clbn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11183957	2L_11183957_SNP [dm3] 2L_11183957_SNP [dm6]	T	C	6.001e^-5	0.275	INTRON Ca-beta
3L	15904053	3L_15904053_SNP [dm3] 3L_15910953_SNP [dm6]	T	A	6.001e^-5	0.275	INTRON sff
2L	13103138	2L_13103138_SNP [dm3] 2L_13103138_SNP [dm6]	A	G	6.037e^-5	0.275	INTERGENIC
2L	10580303	2L_10580303_SNP [dm3] 2L_10580303_SNP [dm6]	A	C	6.052e^-5	0.275	UTR_3_PRIME CG34160 DOWNSTREAM CG34161 INTRON Trim9
3R	18776394	3R_18776394_SNP [dm3] 3R_22950672_SNP [dm6]	C	A	6.052e^-5	0.275	INTRON klg
2L	7707264	2L_7707264_SNP [dm3] 2L_7707264_SNP [dm6]	C	A	6.099e^-5	0.276	DOWNSTREAM CR44990 INTRON Tep3	TF binding site mE1_TFBS_inv
2L	12700233	2L_12700233_SNP [dm3] 2L_12700233_SNP [dm6]	G	A	6.120e^-5	0.276	SYNONYMOUS_CODING CG17036 DOWNSTREAM CG5776	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7484722	2L_7484722_SNP [dm3] 2L_7484722_SNP [dm6]	C	T	6.121e^-5	0.276	INTRON Ziz	TF binding site mE1_TFBS_inv
2R	6647575	2R_6647575_INS [dm3] 2R_10760070_INS [dm6]	A	AGAA	6.197e^-5	0.279	UPSTREAM CR43605 INTRON CG33144
3L	6443754	3L_6443754_SNP [dm3] 3L_6450654_SNP [dm6]	G	A	6.205e^-5	0.279	INTRON CG42747
2R	14284593	2R_14284593_SNP [dm3] 2R_18397088_SNP [dm6]	C	T	6.236e^-5	0.28	SYNONYMOUS_CODING GstE10	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3517042	X_3517042_SNP [dm3] X_3623009_SNP [dm6]	A	T	6.254e^-5	0.28	INTRON AstA-R1
2L	12694258	2L_12694258_SNP [dm3] 2L_12694258_SNP [dm6]	A	G	6.283e^-5	0.28	UPSTREAM PICK1 DOWNSTREAM CG6153 INTRON CG5780
2L	3852846	2L_3852846_SNP [dm3] 2L_3852846_SNP [dm6]	A	G	6.331e^-5	0.282	DOWNSTREAM CR45451 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1
3R	5386235	3R_5386235_INS [dm3] 3R_9560513_INS [dm6]	G	GGAG	6.350e^-5	0.282	UPSTREAM AP-1mu INTRON MBD-like	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2732866	3L_2732866_DEL [dm3] 3L_2732866_DEL [dm6]	CAATCTACGAG...	C	6.356e^-5	0.282	INTRON Mrtf
3L	10232839	3L_10232839_SNP [dm3] 3L_10239739_SNP [dm6]	C	A	6.397e^-5	0.283	UPSTREAM CR45403 INTERGENIC
2L	5727318	2L_5727318_SNP [dm3] 2L_5727318_SNP [dm6]	G	T	6.441e^-5	0.284	UTR_3_PRIME CG14006 INTRON CG11030	TF binding site mE1_TFBS_cad
X	19877503	X_19877503_SNP [dm3] X_19983470_SNP [dm6]	C	G	6.450e^-5	0.284	INTERGENIC
2L	9656828	2L_9656828_SNP [dm3] 2L_9656828_SNP [dm6]	G	A	6.492e^-5	0.284	NON_SYNONYMOUS_CODING CG33299 DOWNSTREAM Apoltp
2R	19771242	2R_19771242_SNP [dm3] 2R_23883719_SNP [dm6]	G	C	6.522e^-5	0.284	UPSTREAM CG4882 INTRON PHDP
2L	7546693	2L_7546693_SNP [dm3] 2L_7546693_SNP [dm6]	C	T	6.529e^-5	0.284	INTRON RapGAP1
3L	2715210	3L_2715210_SNP [dm3] 3L_2715210_SNP [dm6]	A	T	6.531e^-5	0.284	INTERGENIC
3L	2715222	3L_2715222_SNP [dm3] 3L_2715222_SNP [dm6]	A	T	6.531e^-5	0.284	INTERGENIC
2R	17340577	2R_17340577_SNP [dm3] 2R_21453072_SNP [dm6]	C	G	6.542e^-5	0.284	INTRON Sdc
2L	7905335	2L_7905335_INS [dm3] 2L_7905335_INS [dm6]	A	AAA	6.700e^-5	0.29	INTRON Snoo	TF binding site mE1_TFBS_chinmo
2L	5702693	2L_5702693_SNP [dm3] 2L_5702693_SNP [dm6]	G	A	6.743e^-5	0.29	INTERGENIC
2R	2422918	2R_2422918_SNP [dm3] 2R_6535413_SNP [dm6]	G	A	6.743e^-5	0.29	INTRON jing
2L	6839927	2L_6839927_SNP [dm3] 2L_6839927_SNP [dm6]	T	A	6.812e^-5	0.292	DOWNSTREAM sens-2 INTERGENIC
2R	19772972	2R_19772972_SNP [dm3] 2R_23885449_SNP [dm6]	C	T	6.821e^-5	0.292	INTERGENIC
3L	14901023	3L_14901023_SNP [dm3] 3L_14907923_SNP [dm6]	G	A	6.914e^-5	0.296	INTRON DCX-EMAP	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12689352	3L_12689352_SNP [dm3] 3L_12696252_SNP [dm6]	A	G	6.931e^-5	0.296	INTRON mirr	TF binding site BDTNP1_TFBS_dl
X	2457242	X_2457242_SNP [dm3] X_2563209_SNP [dm6]	G	T	6.971e^-5	0.297	INTRON Pdfr
X	4559925	X_4559925_SNP [dm3] X_4665892_SNP [dm6]	T	A	7.032e^-5	0.299	INTRON CG3009
2R	14478382	2R_14478382_SNP [dm3] 2R_18590877_SNP [dm6]	T	C	7.075e^-5	0.299	INTRON GEFmeso
X	3473806	X_3473806_SNP [dm3] X_3579773_SNP [dm6]	T	A	7.077e^-5	0.299	INTRON AstA-R1
X	6111809	X_6111809_SNP [dm3] X_6217776_SNP [dm6]	A	T	7.079e^-5	0.299	NON_SYNONYMOUS_CODING Btd
3L	4133239	3L_4133239_SNP [dm3] 3L_4133239_SNP [dm6]	G	C	7.115e^-5	0.299	INTRON ens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21941383	2L_21941383_SNP [dm3] 2L_21941383_SNP [dm6]	T	A	7.135e^-5	0.3	INTERGENIC
3L	9534879	3L_9534879_SNP [dm3] 3L_9541779_SNP [dm6]	T	C	7.231e^-5	0.303	DOWNSTREAM Ir67a INTERGENIC
2L	7664243	2L_7664243_DEL [dm3] 2L_7664243_DEL [dm6]	TACTTTCTAGTTGAT...	T	7.284e^-5	0.304	INTRON Slob
2L	1099213	2L_1099213_SNP [dm3] 2L_1099213_SNP [dm6]	G	A	7.288e^-5	0.304	INTRON CG4629
3R	26076971	3R_26076971_SNP [dm3] 3R_30251249_SNP [dm6]	C	T	7.377e^-5	0.307	SPLICE_SITE_REGION CG9682 SYNONYMOUS_CODING CG9682 DOWNSTREAM CG34299
X	3223057	X_3223057_SNP [dm3] X_3329024_SNP [dm6]	A	C	7.391e^-5	0.307	UPSTREAM dnc INTRON CR44886 & 1 other
3L	9577969	3L_9577969_SNP [dm3] 3L_9584869_SNP [dm6]	C	A	7.405e^-5	0.307	INTRON CG42673
2R	7022262	2R_7022262_DEL [dm3] 2R_11134757_DEL [dm6]	ACA	G	7.444e^-5	0.307	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	18099325	2R_18099325_SNP [dm3] 2R_22211820_SNP [dm6]	G	T	7.444e^-5	0.307	NON_SYNONYMOUS_CODING CG11291	TF binding site mE1_TFBS_sens
2R	8279027	2R_8279027_SNP [dm3] 2R_12391522_SNP [dm6]	T	C	7.466e^-5	0.307	SYNONYMOUS_CODING Cpr49Ad
2L	15178321	2L_15178321_SNP [dm3] 2L_15178321_SNP [dm6]	T	C	7.520e^-5	0.308	SPLICE_SITE_REGION CG4168 UTR_5_PRIME CG4168
X	10858443	X_10858443_SNP [dm3] X_10964410_SNP [dm6]	T	C	7.526e^-5	0.308	NON_SYNONYMOUS_CODING C901 DOWNSTREAM Myo10A	TF binding site mE1_TFBS_chinmo
3R	26553342	3R_26553342_SNP [dm3] 3R_30727620_SNP [dm6]	C	T	7.565e^-5	0.309	SYNONYMOUS_CODING CG1340	TF binding site mE1_TFBS_cad
2L	15507729	2L_15507729_SNP [dm3] 2L_15507729_SNP [dm6]	C	T	7.607e^-5	0.31	INTERGENIC
3R	9974075	3R_9974075_SNP [dm3] 3R_14148353_SNP [dm6]	C	A	7.691e^-5	0.313	DOWNSTREAM CG14355 INTERGENIC	TF binding site mE1_TFBS_cad
X	14804793	X_14804793_SNP [dm3] X_14910760_SNP [dm6]	C	T	7.722e^-5	0.314	SYNONYMOUS_CODING CG14406 INTRON Flo2
X	3753303	X_3753303_SNP [dm3] X_3859270_SNP [dm6]	A	G	7.751e^-5	0.314	EXON roX1
2L	2299405	2L_2299405_SNP [dm3] 2L_2299405_SNP [dm6]	G	T	7.773e^-5	0.314	UPSTREAM CG31949 INTERGENIC
3L	18626777	3L_18626777_SNP [dm3] 3L_18633677_SNP [dm6]	A	T	7.811e^-5	0.315	INTRON MYPT-75D
3L	9048106	3L_9048106_SNP [dm3] 3L_9055006_SNP [dm6]	A	C	7.840e^-5	0.316	INTRON Argk	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
3L	6443714	3L_6443714_SNP [dm3] 3L_6450614_SNP [dm6]	T	G	7.904e^-5	0.317	INTRON CG42747
3R	25497999	3R_25497999_SNP [dm3] 3R_29672277_SNP [dm6]	T	G	7.912e^-5	0.317	UTR_3_PRIME Obp99a UPSTREAM ppk19 DOWNSTREAM ppk30	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14688107	2R_14688107_SNP [dm3] 2R_18800602_SNP [dm6]	T	C	7.937e^-5	0.317	INTRON l_2_08717	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2R	19590130	2R_19590130_SNP [dm3] 2R_23702607_SNP [dm6]	G	A	7.948e^-5	0.317	UTR_5_PRIME l_2_dtl UPSTREAM CG4091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7725858	2L_7725858_SNP [dm3] 2L_7725858_SNP [dm6]	C	A	7.978e^-5	0.318	INTRON CG13795
3L	18626730	3L_18626730_SNP [dm3] 3L_18633630_SNP [dm6]	T	G	8.034e^-5	0.319	INTRON MYPT-75D
2R	8818664	2R_8818664_SNP [dm3] 2R_12931159_SNP [dm6]	A	T	8.137e^-5	0.32	UTR_3_PRIME CG17019 DOWNSTREAM sug
2L	7093440	2L_7093440_SNP [dm3] 2L_7093440_SNP [dm6]	A	T	8.138e^-5	0.32	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1518895	2L_1518895_SNP [dm3] 2L_1518895_SNP [dm6]	C	T	8.166e^-5	0.32	UPSTREAM halo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	1099212	2L_1099212_SNP [dm3] 2L_1099212_SNP [dm6]	C	G	8.180e^-5	0.32	INTRON CG4629
2R	10433513	2R_10433513_SNP [dm3] 2R_14546008_SNP [dm6]	G	A	8.187e^-5	0.32	INTRON ttv & 1 other
2R	10433548	2R_10433548_SNP [dm3] 2R_14546043_SNP [dm6]	C	T	8.187e^-5	0.32	INTRON ttv & 1 other
2R	10867728	2R_10867728_SNP [dm3] 2R_14980223_SNP [dm6]	T	A	8.205e^-5	0.32	UTR_3_PRIME ckn
2L	5269899	2L_5269899_SNP [dm3] 2L_5269899_SNP [dm6]	G	T	8.209e^-5	0.32	SYNONYMOUS_CODING Cyp4ac3 INTRON tkv	TF binding site mE1_TFBS_sens
2L	15508244	2L_15508244_SNP [dm3] 2L_15508244_SNP [dm6]	G	A	8.215e^-5	0.32	INTERGENIC
2L	15508267	2L_15508267_SNP [dm3] 2L_15508267_SNP [dm6]	T	C	8.215e^-5	0.32	INTERGENIC
2R	14842411	2R_14842411_SNP [dm3] 2R_18954906_SNP [dm6]	G	A	8.249e^-5	0.32	INTRON sano
3L	2708337	3L_2708337_SNP [dm3] 3L_2708337_SNP [dm6]	A	G	8.284e^-5	0.32	INTRON Fife
2R	10472326	2R_10472326_SNP [dm3] 2R_14584821_SNP [dm6]	T	C	8.311e^-5	0.32	UTR_3_PRIME ttv
3L	6917271	3L_6917271_SNP [dm3] 3L_6924171_SNP [dm6]	G	T	8.337e^-5	0.32	INTERGENIC
X	15209832	X_15209832_SNP [dm3] X_15315799_SNP [dm6]	T	G	8.415e^-5	0.32	SYNONYMOUS_CODING gce EXON CR44961
2L	13045678	2L_13045678_SNP [dm3] 2L_13045678_SNP [dm6]	G	C	8.423e^-5	0.32	INTRON CG9932
2L	13046673	2L_13046673_SNP [dm3] 2L_13046673_SNP [dm6]	T	A	8.423e^-5	0.32	INTRON CG9932
2L	13048462	2L_13048462_SNP [dm3] 2L_13048462_SNP [dm6]	T	G	8.423e^-5	0.32	INTRON CG9932
2L	13048993	2L_13048993_SNP [dm3] 2L_13048993_SNP [dm6]	G	A	8.423e^-5	0.32	INTRON CG9932
2R	6746565	2R_6746565_SNP [dm3] 2R_10859060_SNP [dm6]	A	T	8.429e^-5	0.32	UPSTREAM CR44302 INTRON CG30015	TF binding site BDTNP1_TFBS_dl
2R	6746566	2R_6746566_SNP [dm3] 2R_10859061_SNP [dm6]	C	T	8.429e^-5	0.32	UPSTREAM CR44302 INTRON CG30015	TF binding site BDTNP1_TFBS_dl
3L	8573637	3L_8573637_SNP [dm3] 3L_8580537_SNP [dm6]	G	T	8.429e^-5	0.32	INTRON CG43078
3L	14488011	3L_14488011_SNP [dm3] 3L_14494911_SNP [dm6]	C	T	8.437e^-5	0.32	INTRON bbg
3R	11264208	3R_11264208_SNP [dm3] 3R_15438486_SNP [dm6]	C	A	8.574e^-5	0.324	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	21377435	3R_21377435_INS [dm3] 3R_25551713_INS [dm6]	A	ACATA	8.626e^-5	0.325	INTRON msi
X	2665766	X_2665766_SNP [dm3] X_2771733_SNP [dm6]	G	A	8.629e^-5	0.325	INTRON kirre
2R	10254359	2R_10254359_DEL [dm3] 2R_14366854_DEL [dm6]	TT	T	8.659e^-5	0.325	UTR_5_PRIME CG34442 DOWNSTREAM CG34184
3L	11458673	3L_11458673_SNP [dm3] 3L_11465573_SNP [dm6]	G	A	8.686e^-5	0.325	UPSTREAM CG6140 INTRON CG6140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	9546597	3L_9546597_SNP [dm3] 3L_9553497_SNP [dm6]	C	T	8.698e^-5	0.325	SYNONYMOUS_CODING CG42673
X	6285835	X_6285835_SNP [dm3] X_6391802_SNP [dm6]	C	T	8.698e^-5	0.325	INTERGENIC
3L	16446260	3L_16446260_DEL [dm3] 3L_16453160_DEL [dm6]	AA	A	8.727e^-5	0.325	INTRON CG33158
2R	8507758	2R_8507758_SNP [dm3] 2R_12620253_SNP [dm6]	G	A	8.738e^-5	0.325	UTR_3_PRIME Galphaq DOWNSTREAM Galphaq & 1 other	TF binding site mE1_TFBS_zfh1
3R	26108331	3R_26108331_SNP [dm3] 3R_30282609_SNP [dm6]	G	A	8.758e^-5	0.325	INTRON hdc	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	14717809	2L_14717809_SNP [dm3] 2L_14717809_SNP [dm6]	C	T	8.800e^-5	0.326	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14717914	2L_14717914_SNP [dm3] 2L_14717914_SNP [dm6]	C	T	8.800e^-5	0.326	INTERGENIC	TF binding site mE1_TFBS_cad
X	15212438	X_15212438_SNP [dm3] X_15318405_SNP [dm6]	A	C	8.842e^-5	0.326	UTR_3_PRIME gce UPSTREAM CR44961
2R	2458452	2R_2458452_SNP [dm3] 2R_6570947_SNP [dm6]	T	C	8.857e^-5	0.326	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2433280	X_2433280_SNP [dm3] X_2539247_SNP [dm6]	A	G	8.903e^-5	0.327	INTRON trol
3L	17559749	3L_17559749_SNP [dm3] 3L_17566649_SNP [dm6]	C	G	8.917e^-5	0.327	UPSTREAM snoRNA:Me28S-A576 INTRON Eip74EF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6097907	2L_6097907_SNP [dm3] 2L_6097907_SNP [dm6]	T	A	8.931e^-5	0.327	SYNONYMOUS_CODING CG9175	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	26553834	3R_26553834_SNP [dm3] 3R_30728112_SNP [dm6]	T	C	8.938e^-5	0.327	DOWNSTREAM CG1340 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	1518867	2L_1518867_SNP [dm3] 2L_1518867_SNP [dm6]	C	A	8.978e^-5	0.328	UPSTREAM halo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	7001628	2R_7001628_SNP [dm3] 2R_11114123_SNP [dm6]	A	T	9.048e^-5	0.328	INTRON luna
2L	7664260	2L_7664260_SNP [dm3] 2L_7664260_SNP [dm6]	G	A	9.077e^-5	0.328	INTRON Slob
2R	8673709	2R_8673709_SNP [dm3] 2R_12786204_SNP [dm6]	A	T	9.088e^-5	0.328	INTRON sca EXON CR45137	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19947483	2R_19947483_SNP [dm3] 2R_24059960_SNP [dm6]	T	G	9.090e^-5	0.328	UPSTREAM RpL12 & 1 other DOWNSTREAM eIF-5A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	15212099	X_15212099_SNP [dm3] X_15318066_SNP [dm6]	T	G	9.092e^-5	0.328	UTR_3_PRIME gce UPSTREAM CR44961
2R	6565704	2R_6565704_SNP [dm3] 2R_10678199_SNP [dm6]	A	T	9.120e^-5	0.328	INTRON stan
X	20405355	X_20405355_SNP [dm3] X_20534328_SNP [dm6]	A	G	9.125e^-5	0.328	INTERGENIC
3L	18057055	3L_18057055_SNP [dm3] 3L_18063955_SNP [dm6]	T	C	9.176e^-5	0.329	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17145565	2R_17145565_SNP [dm3] 2R_21258060_SNP [dm6]	G	A	9.216e^-5	0.329	INTRON Rgk3
X	6440710	X_6440710_SNP [dm3] X_6546677_SNP [dm6]	A	T	9.219e^-5	0.329	INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10215727	3R_10215727_SNP [dm3] 3R_14390005_SNP [dm6]	G	A	9.225e^-5	0.329	INTERGENIC
3L	12848521	3L_12848521_SNP [dm3] 3L_12855421_SNP [dm6]	G	T	9.283e^-5	0.331	SYNONYMOUS_CODING Ent3	TF binding site mE1_TFBS_cad
3R	18233527	3R_18233527_SNP [dm3] 3R_22407805_SNP [dm6]	T	G	9.354e^-5	0.332	DOWNSTREAM CG13850 INTRON CG13855
X	6378776	X_6378776_DEL [dm3] X_6484743_DEL [dm6]	GTAGTAG	G	9.360e^-5	0.332	INTRON CG42340	TF binding site mE1_TFBS_chinmo
3L	15944329	3L_15944329_SNP [dm3] 3L_15951229_SNP [dm6]	A	T	9.461e^-5	0.335	INTRON Pka-C3
2L	16128095	2L_16128095_INS [dm3] 2L_16128095_INS [dm6]	A	AA	9.483e^-5	0.335	INTERGENIC
2L	9344787	2L_9344787_SNP [dm3] 2L_9344787_SNP [dm6]	T	C	9.534e^-5	0.336	DOWNSTREAM CG3748 INTERGENIC
2L	9344821	2L_9344821_SNP [dm3] 2L_9344821_SNP [dm6]	T	A	9.534e^-5	0.336	DOWNSTREAM CG3748 INTERGENIC
2L	11184069	2L_11184069_SNP [dm3] 2L_11184069_SNP [dm6]	A	T	9.541e^-5	0.336	INTRON Ca-beta
3L	5895982	3L_5895982_SNP [dm3] 3L_5902882_SNP [dm6]	T	G	9.571e^-5	0.336	UPSTREAM QC DOWNSTREAM CG32413 INTERGENIC
3L	2590917	3L_2590917_SNP [dm3] 3L_2590917_SNP [dm6]	T	A	9.594e^-5	0.336	UTR_5_PRIME dos INTRON dos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E
X	16291188	X_16291188_SNP [dm3] X_16397155_SNP [dm6]	G	A	9.607e^-5	0.336	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10433455	2R_10433455_SNP [dm3] 2R_14545950_SNP [dm6]	C	T	9.626e^-5	0.336	INTRON ttv & 1 other
2L	6668175	2L_6668175_SNP [dm3] 2L_6668175_SNP [dm6]	A	T	9.646e^-5	0.336	UPSTREAM Galt INTRON cup & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9875394	3R_9875394_SNP [dm3] 3R_14049672_SNP [dm6]	C	A	9.661e^-5	0.336	INTERGENIC
2R	9614766	2R_9614766_SNP [dm3] 2R_13727261_SNP [dm6]	T	A	9.697e^-5	0.336	INTRON fas
3L	4086332	3L_4086332_SNP [dm3] 3L_4086332_SNP [dm6]	T	C	9.731e^-5	0.336	UPSTREAM Gad1 INTRON Gad1
X	2433328	X_2433328_SNP [dm3] X_2539295_SNP [dm6]	C	G	9.739e^-5	0.336	INTRON trol
2R	15753145	2R_15753145_SNP [dm3] 2R_19865640_SNP [dm6]	A	C	9.744e^-5	0.336	INTRON Obp56i
3R	22761611	3R_22761611_SNP [dm3] 3R_26935889_SNP [dm6]	A	T	9.758e^-5	0.336	INTRON sda
2L	9343320	2L_9343320_SNP [dm3] 2L_9343320_SNP [dm6]	C	T	9.808e^-5	0.336	NON_SYNONYMOUS_CODING CG3748
2R	17308194	2R_17308194_SNP [dm3] 2R_21420689_SNP [dm6]	C	T	9.824e^-5	0.336	INTRON Sdc
X	20465716	X_20465716_SNP [dm3] X_20594689_SNP [dm6]	G	T	9.836e^-5	0.336	INTRON RunxA
3L	10835780	3L_10835780_SNP [dm3] 3L_10842680_SNP [dm6]	T	C	9.839e^-5	0.336	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	17050578	3L_17050578_SNP [dm3] 3L_17057478_SNP [dm6]	A	T	9.880e^-5	0.337	SYNONYMOUS_CODING CG7724	TF binding site mE1_TFBS_cad
2R	20407046	2R_20407046_SNP [dm3] 2R_24519523_SNP [dm6]	A	C	9.883e^-5	0.337	NON_SYNONYMOUS_CODING Ir60d DOWNSTREAM Ir60c	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6996541	2R_6996541_INS [dm3] 2R_11109036_INS [dm6]	A	AGA	9.968e^-5	0.339	INTRON luna
3L	2954813	3L_2954813_SNP [dm3] 3L_2954813_SNP [dm6]	T	A	9.991e^-5	0.339	SYNONYMOUS_CODING Shab	TF binding site mE1_TFBS_chinmo
3L	15982063	3L_15982063_SNP [dm3] 3L_15988963_SNP [dm6]	C	T	1.001e^-4	0.339	SYNONYMOUS_CODING Hip14 DOWNSTREAM CR45446	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8340351	2L_8340351_SNP [dm3] 2L_8340351_SNP [dm6]	C	A	1.007e^-4	0.341	INTRON CG14274
3L	13547105	3L_13547105_SNP [dm3] 3L_13554005_SNP [dm6]	A	T	1.021e^-4	0.344	INTRON bru-3
2L	8323686	2L_8323686_SNP [dm3] 2L_8323686_SNP [dm6]	C	T	1.022e^-4	0.344	INTRON CG7781
X	6197718	X_6197718_SNP [dm3] X_6303685_SNP [dm6]	C	G	1.022e^-4	0.344	UPSTREAM CG3823 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5526077	X_5526077_SNP [dm3] X_5632044_SNP [dm6]	A	T	1.026e^-4	0.345	INTRON CG42492
X	19877502	X_19877502_SNP [dm3] X_19983469_SNP [dm6]	G	A	1.040e^-4	0.348	INTERGENIC
2L	1159401	2L_1159401_SNP [dm3] 2L_1159401_SNP [dm6]	G	A	1.041e^-4	0.348	SYNONYMOUS_CODING Tango14 UPSTREAM CR43767 DOWNSTREAM CG5080	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2572161	2L_2572161_SNP [dm3] 2L_2572161_SNP [dm6]	T	C	1.047e^-4	0.35	SYNONYMOUS_CODING Cyp309a2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	5682398	2L_5682398_SNP [dm3] 2L_5682398_SNP [dm6]	G	A	1.050e^-4	0.35	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1793997	2L_1793997_SNP [dm3] 2L_1793997_SNP [dm6]	T	G	1.050e^-4	0.35	SYNONYMOUS_CODING Gr22a UPSTREAM Gr22b
2L	3490204	2L_3490204_SNP [dm3] 2L_3490204_SNP [dm6]	G	C	1.053e^-4	0.35	INTRON CG15414
X	4046633	X_4046633_SNP [dm3] X_4152600_SNP [dm6]	G	A	1.059e^-4	0.351	INTRON Fas2
3R	24673723	3R_24673723_SNP [dm3] 3R_28848001_SNP [dm6]	A	G	1.061e^-4	0.351	INTRON spg
X	18104351	X_18104351_SNP [dm3] X_18210318_SNP [dm6]	G	T	1.072e^-4	0.354	NON_SYNONYMOUS_CODING Him DOWNSTREAM CG33639
3L	4135074	3L_4135074_SNP [dm3] 3L_4135074_SNP [dm6]	G	A	1.073e^-4	0.354	SYNONYMOUS_CODING RfC4 UPSTREAM ens	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	10982215	3L_10982215_SNP [dm3] 3L_10989115_SNP [dm6]	T	A	1.084e^-4	0.357	INTRON klu
2L	2724578	2L_2724578_SNP [dm3] 2L_2724578_SNP [dm6]	T	G	1.087e^-4	0.357	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	8001814	2L_8001814_SNP [dm3] 2L_8001814_SNP [dm6]	C	A	1.088e^-4	0.357	INTRON Wwox
X	3099803	X_3099803_SNP [dm3] X_3205770_SNP [dm6]	C	T	1.089e^-4	0.357	INTRON dnc	TF binding site BDTNP1_TFBS_dl
3L	10234110	3L_10234110_SNP [dm3] 3L_10241010_SNP [dm6]	A	G	1.092e^-4	0.357	DOWNSTREAM CR45403 INTERGENIC
3R	15058025	3R_15058025_SNP [dm3] 3R_19232303_SNP [dm6]	G	A	1.096e^-4	0.358	SYNONYMOUS_CODING unc79
X	11173419	X_11173419_SNP [dm3] X_11279386_SNP [dm6]	C	T	1.098e^-4	0.358	INTRON CG44422
3L	7514524	3L_7514524_SNP [dm3] 3L_7521424_SNP [dm6]	G	T	1.101e^-4	0.358	INTRON ltl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	7249738	3L_7249738_SNP [dm3] 3L_7256638_SNP [dm6]	T	G	1.103e^-4	0.358	INTRON CG14830
X	8086313	X_8086313_SNP [dm3] X_8192280_SNP [dm6]	T	A	1.105e^-4	0.358	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
X	8086322	X_8086322_SNP [dm3] X_8192289_SNP [dm6]	A	T	1.105e^-4	0.358	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	17530169	3L_17530169_SNP [dm3] 3L_17537069_SNP [dm6]	T	G	1.107e^-4	0.358	INTRON Nedd4
3L	8750111	3L_8750111_DEL [dm3] 3L_8757011_DEL [dm6]	TA	T	1.114e^-4	0.359	UTR_3_PRIME CG6576 INTRON Fhos
3L	4722044	3L_4722044_SNP [dm3] 3L_4722044_SNP [dm6]	C	A	1.117e^-4	0.359	INTRON RhoGEF64C
3L	7392785	3L_7392785_SNP [dm3] 3L_7399685_SNP [dm6]	C	T	1.117e^-4	0.359	SYNONYMOUS_CODING CG8562 UPSTREAM CG18417
2R	16722085	2R_16722085_SNP [dm3] 2R_20834580_SNP [dm6]	A	C	1.118e^-4	0.359	INTRON insc & 1 other	TF binding site mE1_TFBS_HSA
X	16289841	X_16289841_SNP [dm3] X_16395808_SNP [dm6]	G	A	1.127e^-4	0.36	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
X	16332715	X_16332715_SNP [dm3] X_16438682_SNP [dm6]	G	T	1.127e^-4	0.36	UTR_3_PRIME CG9947 DOWNSTREAM CG9947 & 1 other
2L	1194390	2L_1194390_SNP [dm3] 2L_1194390_SNP [dm6]	A	G	1.127e^-4	0.36	INTRON CG5001
2R	18598328	2R_18598328_SNP [dm3] 2R_22710823_SNP [dm6]	A	C	1.129e^-4	0.36	NON_SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18273329	3L_18273329_SNP [dm3] 3L_18280229_SNP [dm6]	T	A	1.133e^-4	0.36	INTERGENIC	TF binding site mE1_TFBS_Ubx
X	8274609	X_8274609_SNP [dm3] X_8380576_SNP [dm6]	G	T	1.134e^-4	0.36	INTERGENIC
3L	10943229	3L_10943229_SNP [dm3] 3L_10950129_SNP [dm6]	C	T	1.135e^-4	0.36	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6962924	2R_6962924_DEL [dm3] 2R_11075419_DEL [dm6]	CCCTTGTAC	C	1.138e^-4	0.36	INTRON luna
3L	7388971	3L_7388971_SNP [dm3] 3L_7395871_SNP [dm6]	C	T	1.141e^-4	0.36	SYNONYMOUS_CODING CG8563 UPSTREAM CG32379
3L	9867118	3L_9867118_SNP [dm3] 3L_9874018_SNP [dm6]	C	A	1.142e^-4	0.36	INTERGENIC
2R	16998902	2R_16998902_SNP [dm3] 2R_21111397_SNP [dm6]	C	T	1.150e^-4	0.362	INTRON ktub
3L	4565524	3L_4565524_SNP [dm3] 3L_4565524_SNP [dm6]	A	T	1.157e^-4	0.363	INTRON CG42540	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9863370	3L_9863370_SNP [dm3] 3L_9870270_SNP [dm6]	T	G	1.159e^-4	0.363	NON_SYNONYMOUS_CODING CG8108	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	105174	3L_105174_SNP [dm3] 3L_105174_SNP [dm6]	C	T	1.160e^-4	0.363	INTERGENIC
2R	14009752	2R_14009752_SNP [dm3] 2R_18122247_SNP [dm6]	A	T	1.163e^-4	0.364	SYNONYMOUS_CODING stau	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17558836	3L_17558836_SNP [dm3] 3L_17565736_SNP [dm6]	G	T	1.165e^-4	0.364	DOWNSTREAM snoRNA:Me28S-A576 INTRON Eip74EF
2L	6801876	2L_6801876_SNP [dm3] 2L_6801876_SNP [dm6]	C	T	1.168e^-4	0.364	UTR_3_PRIME CG17377 UPSTREAM CG17376 INTRON CG17377	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	20723819	2R_20723819_SNP [dm3] 2R_24836296_SNP [dm6]	C	T	1.174e^-4	0.365	DOWNSTREAM Dll INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	1585107	2L_1585107_SNP [dm3] 2L_1585107_SNP [dm6]	C	G	1.186e^-4	0.368	SYNONYMOUS_CODING CG10869 INTRON haf
2L	14250962	2L_14250962_SNP [dm3] 2L_14250962_SNP [dm6]	A	C	1.189e^-4	0.369	INTERGENIC
2R	12251517	2R_12251517_SNP [dm3] 2R_16364012_SNP [dm6]	T	A	1.193e^-4	0.369	NON_SYNONYMOUS_CODING CG15711 DOWNSTREAM CG6262
3R	13930026	3R_13930026_SNP [dm3] 3R_18104304_SNP [dm6]	A	T	1.198e^-4	0.37	INTRON sr
X	15226981	X_15226981_SNP [dm3] X_15332948_SNP [dm6]	C	G	1.200e^-4	0.37	UTR_5_PRIME CG9114 UPSTREAM HDAC6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	5976097	3R_5976097_DEL [dm3] 3R_10150375_DEL [dm6]	TTGCACT	T	1.205e^-4	0.371	DOWNSTREAM CG34303 INTRON Invadolysin
2L	15146307	2L_15146307_SNP [dm3] 2L_15146307_SNP [dm6]	C	A	1.206e^-4	0.371	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7278991	2R_7278991_SNP [dm3] 2R_11391486_SNP [dm6]	C	T	1.208e^-4	0.371	INTRON sprt
2R	2678829	2R_2678829_DEL [dm3] 2R_6791324_DEL [dm6]	ATCA	A	1.215e^-4	0.372	INTRON Epac	TF binding site mE1_TFBS_cad
X	16359522	X_16359522_SNP [dm3] X_16465489_SNP [dm6]	G	A	1.215e^-4	0.372	INTRON para
2L	11231652	2L_11231652_SNP [dm3] 2L_11231652_SNP [dm6]	G	A	1.219e^-4	0.373	INTRON ab
3L	1528592	3L_1528592_SNP [dm3] 3L_1528592_SNP [dm6]	T	C	1.226e^-4	0.374	DOWNSTREAM Ir62a INTRON CG12090	TF binding site mE1_TFBS_cad
X	5363298	X_5363298_DEL [dm3] X_5469265_DEL [dm6]	AT	A	1.242e^-4	0.378	INTRON SPR
3L	8455462	3L_8455462_SNP [dm3] 3L_8462362_SNP [dm6]	T	A	1.254e^-4	0.381	INTRON Gug	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17330094	2R_17330094_SNP [dm3] 2R_21442589_SNP [dm6]	C	A	1.267e^-4	0.384	INTRON Sdc
2R	17358536	2R_17358536_INS [dm3] 2R_21471031_INS [dm6]	T	TTAT	1.268e^-4	0.384	INTRON Sdc
2L	7672678	2L_7672678_SNP [dm3] 2L_7672678_SNP [dm6]	T	C	1.271e^-4	0.384	INTRON Slob & 1 other
2R	16235749	2R_16235749_SNP [dm3] 2R_20348244_SNP [dm6]	C	T	1.272e^-4	0.384	DOWNSTREAM CG16741 INTERGENIC
X	16359483	X_16359483_SNP [dm3] X_16465450_SNP [dm6]	A	G	1.276e^-4	0.385	INTRON para
3L	7389348	3L_7389348_SNP [dm3] 3L_7396248_SNP [dm6]	C	G	1.290e^-4	0.387	UPSTREAM CG32379 DOWNSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6771562	2L_6771562_SNP [dm3] 2L_6771562_SNP [dm6]	T	C	1.291e^-4	0.387	UPSTREAM CG11321 INTRON CG11321
X	3517045	X_3517045_SNP [dm3] X_3623012_SNP [dm6]	T	G	1.293e^-4	0.387	INTRON AstA-R1
X	3517046	X_3517046_SNP [dm3] X_3623013_SNP [dm6]	A	T	1.293e^-4	0.387	INTRON AstA-R1
3L	2670245	3L_2670245_INS [dm3] 3L_2670245_INS [dm6]	A	AA	1.294e^-4	0.387	DOWNSTREAM Fife INTRON Fife
2L	21029767	2L_21029767_SNP [dm3] 2L_21029767_SNP [dm6]	G	A	1.295e^-4	0.387	INTRON CG42238
3L	946404	3L_946404_SNP [dm3] 3L_946404_SNP [dm6]	G	T	1.305e^-4	0.389	INTRON Glut1
X	2487980	X_2487980_SNP [dm3] X_2593947_SNP [dm6]	C	T	1.309e^-4	0.39	INTRON egh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11119934	3L_11119934_DEL [dm3] 3L_11126834_DEL [dm6]	TAAGT	T	1.313e^-4	0.39	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	8617898	X_8617898_SNP [dm3] X_8723865_SNP [dm6]	G	A	1.320e^-4	0.39	UPSTREAM CR43297 INTERGENIC
2L	15989747	2L_15989747_SNP [dm3] 2L_15989747_SNP [dm6]	T	G	1.321e^-4	0.39	UPSTREAM CR43412 INTERGENIC
2R	3266400	2R_3266400_SNP [dm3] 2R_7378895_SNP [dm6]	G	T	1.321e^-4	0.39	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7717927	2L_7717927_SNP [dm3] 2L_7717927_SNP [dm6]	T	C	1.321e^-4	0.39	SYNONYMOUS_CODING CG13793
3L	4133166	3L_4133166_SNP [dm3] 3L_4133166_SNP [dm6]	G	T	1.325e^-4	0.39	INTRON ens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3490019	2L_3490019_SNP [dm3] 2L_3490019_SNP [dm6]	C	T	1.329e^-4	0.39	INTRON CG15414
2R	8452846	2R_8452846_SNP [dm3] 2R_12565341_SNP [dm6]	A	G	1.331e^-4	0.39	UPSTREAM CG33775 & 1 other INTERGENIC
2R	17403097	2R_17403097_SNP [dm3] 2R_21515592_SNP [dm6]	A	C	1.333e^-4	0.39	DOWNSTREAM MESK2 INTRON MESK2
2L	5869998	2L_5869998_SNP [dm3] 2L_5869998_SNP [dm6]	C	G	1.337e^-4	0.39	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	5870047	2L_5870047_SNP [dm3] 2L_5870047_SNP [dm6]	G	T	1.337e^-4	0.39	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	15385780	2R_15385780_SNP [dm3] 2R_19498275_SNP [dm6]	T	C	1.337e^-4	0.39	SYNONYMOUS_CODING CG15120	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10433414	2R_10433414_SNP [dm3] 2R_14545909_SNP [dm6]	G	A	1.337e^-4	0.39	INTRON ttv & 1 other
2R	7281779	2R_7281779_SNP [dm3] 2R_11394274_SNP [dm6]	A	C	1.340e^-4	0.39	UPSTREAM tRNA:CR30257 INTRON sprt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9253612	2R_9253612_SNP [dm3] 2R_13366107_SNP [dm6]	C	T	1.352e^-4	0.391	INTERGENIC
2L	13400342	2L_13400342_SNP [dm3] 2L_13400342_SNP [dm6]	G	A	1.352e^-4	0.391	UPSTREAM CR44600 INTRON CG7110
3L	10943230	3L_10943230_SNP [dm3] 3L_10950130_SNP [dm6]	G	A	1.353e^-4	0.391	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1045241	3L_1045241_SNP [dm3] 3L_1045241_SNP [dm6]	G	T	1.354e^-4	0.391	INTRON bab1
3L	4134793	3L_4134793_DEL [dm3] 3L_4134793_DEL [dm6]	GAC	G	1.356e^-4	0.391	UPSTREAM ens DOWNSTREAM RfC4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	1913039	3R_1913039_SNP [dm3] 3R_6087317_SNP [dm6]	A	C	1.356e^-4	0.391	INTERGENIC
3L	10576950	3L_10576950_SNP [dm3] 3L_10583850_SNP [dm6]	T	A	1.360e^-4	0.392	INTRON A2bp1
3L	287495	3L_287495_SNP [dm3] 3L_287495_SNP [dm6]	C	A	1.368e^-4	0.393	NON_SYNONYMOUS_CODING RhoGEF3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13241975	3L_13241975_SNP [dm3] 3L_13248875_SNP [dm6]	G	C	1.369e^-4	0.393	UPSTREAM tRNA:D2:69F & 1 other INTRON caps
2R	8452869	2R_8452869_SNP [dm3] 2R_12565364_SNP [dm6]	T	C	1.370e^-4	0.393	UPSTREAM CG33775 & 1 other INTERGENIC
2R	6546179	2R_6546179_SNP [dm3] 2R_10658674_SNP [dm6]	C	T	1.376e^-4	0.394	INTERGENIC
3L	15253947	3L_15253947_INS [dm3] 3L_15260847_INS [dm6]	A	ATTCATAAAATT...	1.380e^-4	0.394	INTERGENIC	TF binding site mE1_TFBS_cad
3R	19133428	3R_19133428_SNP [dm3] 3R_23307706_SNP [dm6]	C	T	1.385e^-4	0.395	INTRON pnt
X	7557304	X_7557304_SNP [dm3] X_7663271_SNP [dm6]	A	G	1.392e^-4	0.396	SYNONYMOUS_CODING ct
3L	4565298	3L_4565298_SNP [dm3] 3L_4565298_SNP [dm6]	C	A	1.397e^-4	0.396	INTRON CG42540
3L	4565300	3L_4565300_SNP [dm3] 3L_4565300_SNP [dm6]	G	A	1.397e^-4	0.396	INTRON CG42540
3R	27740155	3R_27740155_SNP [dm3] 3R_31914433_SNP [dm6]	G	A	1.397e^-4	0.396	INTRON heph
2L	9166893	2L_9166893_SNP [dm3] 2L_9166893_SNP [dm6]	A	T	1.397e^-4	0.396	START_GAINED tai UTR_5_PRIME tai UPSTREAM CG9586	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
X	9850721	X_9850721_SNP [dm3] X_9956688_SNP [dm6]	A	T	1.401e^-4	0.396	INTERGENIC
3L	14021593	3L_14021593_SNP [dm3] 3L_14028493_SNP [dm6]	G	A	1.409e^-4	0.398	INTRON ptip	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	6631553	2R_6631553_DEL [dm3] 2R_10744048_DEL [dm6]	TT	A	1.413e^-4	0.398	INTRON CG33144
2L	6445470	2L_6445470_SNP [dm3] 2L_6445470_SNP [dm6]	T	G	1.414e^-4	0.398	SYNONYMOUS_CODING CG9527
3R	25167994	3R_25167994_SNP [dm3] 3R_29342272_SNP [dm6]	A	G	1.418e^-4	0.398	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8455461	3L_8455461_SNP [dm3] 3L_8462361_SNP [dm6]	T	C	1.418e^-4	0.398	INTRON Gug	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6682217	2L_6682217_SNP [dm3] 2L_6682217_SNP [dm6]	T	G	1.421e^-4	0.398	SYNONYMOUS_CODING Nhe3	TF binding site mE1_TFBS_inv
3R	24602058	3R_24602058_SNP [dm3] 3R_28776336_SNP [dm6]	C	A	1.430e^-4	0.4	UPSTREAM CR44952 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7584326	2L_7584326_SNP [dm3] 2L_7584326_SNP [dm6]	T	G	1.431e^-4	0.4	DOWNSTREAM Spn28B INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	8057350	2L_8057350_SNP [dm3] 2L_8057350_SNP [dm6]	C	T	1.434e^-4	0.4	SYNONYMOUS_CODING poe
3R	24890958	3R_24890958_SNP [dm3] 3R_29065236_SNP [dm6]	G	A	1.441e^-4	0.4	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	9038187	X_9038187_SNP [dm3] X_9144154_SNP [dm6]	C	T	1.443e^-4	0.4	SYNONYMOUS_CODING CG7065	TF binding site mE1_TFBS_chinmo
3L	16019803	3L_16019803_SNP [dm3] 3L_16026703_SNP [dm6]	T	G	1.444e^-4	0.4	INTRON Notum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	15730769	2R_15730769_SNP [dm3] 2R_19843264_SNP [dm6]	T	A	1.446e^-4	0.4	START_GAINED CG44569 UTR_5_PRIME CG44569	TF binding site mE1_TFBS_Kr
2R	8170466	2R_8170466_SNP [dm3] 2R_12282961_SNP [dm6]	T	C	1.446e^-4	0.4	INTRON CG42700
3L	4134805	3L_4134805_SNP [dm3] 3L_4134805_SNP [dm6]	A	T	1.448e^-4	0.4	UPSTREAM ens DOWNSTREAM RfC4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	1713018	2R_1713018_SNP [dm3] 2R_5825513_SNP [dm6]	T	G	1.448e^-4	0.4	INTRON dpr12
2R	14297216	2R_14297216_SNP [dm3] 2R_18409711_SNP [dm6]	G	T	1.461e^-4	0.402	NON_SYNONYMOUS_CODING GstE9 DOWNSTREAM imd & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	3517039	X_3517039_SNP [dm3] X_3623006_SNP [dm6]	A	G	1.462e^-4	0.402	INTRON AstA-R1
2L	7091428	2L_7091428_SNP [dm3] 2L_7091428_SNP [dm6]	T	A	1.465e^-4	0.402	INTERGENIC
2R	13944784	2R_13944784_SNP [dm3] 2R_18057279_SNP [dm6]	T	G	1.467e^-4	0.402	UPSTREAM CG10912 DOWNSTREAM CR45314 INTERGENIC	TF binding site mE1_TFBS_cad
2L	7504914	2L_7504914_SNP [dm3] 2L_7504914_SNP [dm6]	T	A	1.475e^-4	0.404	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	12541430	3L_12541430_SNP [dm3] 3L_12548330_SNP [dm6]	G	A	1.481e^-4	0.405	INTRON sowah
X	18831602	X_18831602_SNP [dm3] X_18937569_SNP [dm6]	T	A	1.489e^-4	0.406	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18270769	X_18270769_SNP [dm3] X_18376736_SNP [dm6]	T	A	1.489e^-4	0.406	UTR_3_PRIME CrebB DOWNSTREAM por
2L	21071538	2L_21071538_SNP [dm3] 2L_21071538_SNP [dm6]	A	T	1.494e^-4	0.407	UPSTREAM CG9265 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27375693	3R_27375693_DEL [dm3] 3R_31549971_DEL [dm6]	TGG	T	1.496e^-4	0.407	INTRON nyo
3L	7389325	3L_7389325_SNP [dm3] 3L_7396225_SNP [dm6]	T	G	1.501e^-4	0.407	UPSTREAM CG32379 DOWNSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7389330	3L_7389330_SNP [dm3] 3L_7396230_SNP [dm6]	T	A	1.501e^-4	0.407	UPSTREAM CG32379 DOWNSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1535965	3L_1535965_SNP [dm3] 3L_1535965_SNP [dm6]	A	G	1.507e^-4	0.407	SYNONYMOUS_CODING CG12091	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15450492	3R_15450492_SNP [dm3] 3R_19624770_SNP [dm6]	C	T	1.513e^-4	0.407	UPSTREAM CG6231 INTRON CG6231
2L	5656493	2L_5656493_DEL [dm3] 2L_5656493_DEL [dm6]	GAGAC	G	1.514e^-4	0.407	INTRON CG31646
X	5176414	X_5176414_SNP [dm3] X_5282381_SNP [dm6]	G	T	1.515e^-4	0.407	INTERGENIC
X	5176420	X_5176420_SNP [dm3] X_5282387_SNP [dm6]	A	G	1.515e^-4	0.407	INTERGENIC
2L	4686586	2L_4686586_SNP [dm3] 2L_4686586_SNP [dm6]	G	A	1.524e^-4	0.407	SYNONYMOUS_CODING CG11929 UPSTREAM Elba3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16768720	2R_16768720_INS [dm3] 2R_20881215_INS [dm6]	T	AAGAGTAACA	1.524e^-4	0.407	INTRON Cib2
2R	16768771	2R_16768771_SNP [dm3] 2R_20881266_SNP [dm6]	C	A	1.524e^-4	0.407	INTRON Cib2	TF binding site mE1_TFBS_inv
2R	16768792	2R_16768792_DEL [dm3] 2R_20881287_DEL [dm6]	ATTATAAGGCA...	A	1.524e^-4	0.407	INTRON Cib2	TF binding site mE1_TFBS_inv
2R	16768816	2R_16768816_SNP [dm3] 2R_20881311_SNP [dm6]	A	T	1.524e^-4	0.407	INTRON Cib2	TF binding site mE1_TFBS_inv
X	20418745	X_20418745_INS [dm3] X_20547718_INS [dm6]	C	CGCAC	1.531e^-4	0.408	INTRON RunxB
2R	14280668	2R_14280668_SNP [dm3] 2R_18393163_SNP [dm6]	A	G	1.531e^-4	0.408	UPSTREAM Idgf5 INTERGENIC	TF binding site mE1_TFBS_inv
3L	7385913	3L_7385913_SNP [dm3] 3L_7392813_SNP [dm6]	T	C	1.534e^-4	0.408	INTRON CG8563
2L	9147442	2L_9147442_SNP [dm3] 2L_9147442_SNP [dm6]	G	A	1.545e^-4	0.411	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12635158	3L_12635158_DEL [dm3] 3L_12642058_DEL [dm6]	CCAGTGCACTCC...	C	1.552e^-4	0.412	INTRON CR32111 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16751244	2R_16751244_SNP [dm3] 2R_20863739_SNP [dm6]	T	G	1.557e^-4	0.412	UPSTREAM CG15227 INTERGENIC
3L	5086124	3L_5086124_SNP [dm3] 3L_5086124_SNP [dm6]	T	A	1.559e^-4	0.412	INTERGENIC
2L	11965735	2L_11965735_SNP [dm3] 2L_11965735_SNP [dm6]	C	A	1.562e^-4	0.412	INTRON CR43314	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2851816	3L_2851816_SNP [dm3] 3L_2851816_SNP [dm6]	G	A	1.563e^-4	0.412	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
X	2436304	X_2436304_SNP [dm3] X_2542271_SNP [dm6]	T	G	1.573e^-4	0.413	INTRON trol	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	6994734	2R_6994734_SNP [dm3] 2R_11107229_SNP [dm6]	A	T	1.575e^-4	0.413	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1057192	3L_1057192_SNP [dm3] 3L_1057192_SNP [dm6]	G	T	1.580e^-4	0.413	INTRON bab1
X	18405163	X_18405163_SNP [dm3] X_18511130_SNP [dm6]	C	T	1.581e^-4	0.413	INTRON Ggt-1
X	18405275	X_18405275_SNP [dm3] X_18511242_SNP [dm6]	C	G	1.581e^-4	0.413	INTRON Ggt-1
2R	14843491	2R_14843491_SNP [dm3] 2R_18955986_SNP [dm6]	G	A	1.585e^-4	0.413	SYNONYMOUS_CODING sano	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18409562	2R_18409562_SNP [dm3] 2R_22522057_SNP [dm6]	A	T	1.586e^-4	0.413	INTRON px
X	15217735	X_15217735_SNP [dm3] X_15323702_SNP [dm6]	A	G	1.593e^-4	0.413	SYNONYMOUS_CODING Top1 INTRON Top1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12858229	3L_12858229_INS [dm3] 3L_12865129_INS [dm6]	C	AAT	1.595e^-4	0.413	INTERGENIC
3L	12858232	3L_12858232_SNP [dm3] 3L_12865132_SNP [dm6]	C	A	1.595e^-4	0.413	INTERGENIC
3L	12858450	3L_12858450_SNP [dm3] 3L_12865350_SNP [dm6]	A	G	1.595e^-4	0.413	INTERGENIC
2L	9344790	2L_9344790_SNP [dm3] 2L_9344790_SNP [dm6]	T	G	1.595e^-4	0.413	DOWNSTREAM CG3748 INTERGENIC
3L	2720885	3L_2720885_SNP [dm3] 3L_2720885_SNP [dm6]	A	T	1.598e^-4	0.413	NON_SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2498579	2L_2498579_SNP [dm3] 2L_2498579_SNP [dm6]	A	C	1.598e^-4	0.413	UTR_3_PRIME oaf DOWNSTREAM oaf
2R	6631551	2R_6631551_SNP [dm3] 2R_10744046_SNP [dm6]	A	G	1.599e^-4	0.413	INTRON CG33144
X	16290219	X_16290219_SNP [dm3] X_16396186_SNP [dm6]	C	T	1.613e^-4	0.416	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
3R	26553585	3R_26553585_SNP [dm3] 3R_30727863_SNP [dm6]	T	A	1.625e^-4	0.419	UTR_3_PRIME CG1340	TF binding site mE1_TFBS_cad
3R	24602029	3R_24602029_SNP [dm3] 3R_28776307_SNP [dm6]	A	C	1.630e^-4	0.419	UPSTREAM CR44952 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	20235209	2R_20235209_SNP [dm3] 2R_24347686_SNP [dm6]	T	A	1.633e^-4	0.42	INTRON bs	TF binding site BDTNP1_TFBS_twi
3L	16250516	3L_16250516_SNP [dm3] 3L_16257416_SNP [dm6]	C	A	1.640e^-4	0.421	UPSTREAM CG13054 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	2612461	2L_2612461_SNP [dm3] 2L_2612461_SNP [dm6]	G	A	1.645e^-4	0.422	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6227808	2R_6227808_SNP [dm3] 2R_10340303_SNP [dm6]	T	C	1.650e^-4	0.422	INTRON CG42732
3L	16844964	3L_16844964_SNP [dm3] 3L_16851864_SNP [dm6]	A	G	1.655e^-4	0.423	NON_SYNONYMOUS_CODING CG9715 DOWNSTREAM Rh4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1776605	2R_1776605_SNP [dm3] 2R_5889100_SNP [dm6]	C	A	1.662e^-4	0.424	INTERGENIC	transposable element FlyBase
2R	7157482	2R_7157482_SNP [dm3] 2R_11269977_SNP [dm6]	G	T	1.668e^-4	0.424	SYNONYMOUS_CODING Cpr47Ef	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12999425	X_12999425_SNP [dm3] X_13105392_SNP [dm6]	C	T	1.668e^-4	0.424	INTRON CG43313
X	16231382	X_16231382_SNP [dm3] X_16337349_SNP [dm6]	G	A	1.668e^-4	0.424	INTRON Dsp1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8412316	3L_8412316_SNP [dm3] 3L_8419216_SNP [dm6]	C	T	1.673e^-4	0.424	INTRON CG32354
3L	8867597	3L_8867597_SNP [dm3] 3L_8874497_SNP [dm6]	C	T	1.673e^-4	0.424	INTRON dally
2L	6679211	2L_6679211_SNP [dm3] 2L_6679211_SNP [dm6]	C	T	1.676e^-4	0.424	NON_SYNONYMOUS_CODING Nhe3 DOWNSTREAM Nhe3 INTRON Nhe3
2R	15198497	2R_15198497_SNP [dm3] 2R_19310992_SNP [dm6]	G	A	1.680e^-4	0.425	UPSTREAM EndoB DOWNSTREAM Rgk1 INTERGENIC
2L	15508214	2L_15508214_SNP [dm3] 2L_15508214_SNP [dm6]	T	C	1.682e^-4	0.425	INTERGENIC
2R	16430426	2R_16430426_DEL [dm3] 2R_20542921_DEL [dm6]	AAAATTC	A	1.689e^-4	0.426	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10795477	3R_10795477_SNP [dm3] 3R_14969755_SNP [dm6]	C	A	1.721e^-4	0.432	INTERGENIC
3R	25192514	3R_25192514_SNP [dm3] 3R_29366792_SNP [dm6]	A	G	1.721e^-4	0.432	INTERGENIC
3R	25192528	3R_25192528_SNP [dm3] 3R_29366806_SNP [dm6]	C	A	1.721e^-4	0.432	INTERGENIC
3R	26957464	3R_26957464_SNP [dm3] 3R_31131742_SNP [dm6]	T	C	1.721e^-4	0.432	UPSTREAM CR43458 INTERGENIC
X	18438852	X_18438852_SNP [dm3] X_18544819_SNP [dm6]	C	G	1.729e^-4	0.433	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8576129	3L_8576129_SNP [dm3] 3L_8583029_SNP [dm6]	T	G	1.732e^-4	0.433	UPSTREAM CG43078 INTRON CG43078
X	5176388	X_5176388_SNP [dm3] X_5282355_SNP [dm6]	G	A	1.735e^-4	0.433	INTERGENIC
3L	8507791	3L_8507791_SNP [dm3] 3L_8514691_SNP [dm6]	G	T	1.738e^-4	0.433	INTRON CG6765 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	5669821	2L_5669821_SNP [dm3] 2L_5669821_SNP [dm6]	A	G	1.741e^-4	0.434	SYNONYMOUS_CODING Hsp60C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6966752	2R_6966752_INS [dm3] 2R_11079247_INS [dm6]	T	GA	1.755e^-4	0.434	INTRON luna	TF binding site mE1_TFBS_chinmo
2R	10433464	2R_10433464_SNP [dm3] 2R_14545959_SNP [dm6]	C	T	1.759e^-4	0.434	INTRON ttv & 1 other
X	15221752	X_15221752_SNP [dm3] X_15327719_SNP [dm6]	G	T	1.760e^-4	0.434	UTR_3_PRIME Top1 UPSTREAM dah DOWNSTREAM Top1	TF binding site BDTNP1_TFBS_dl
X	15223088	X_15223088_SNP [dm3] X_15329055_SNP [dm6]	C	T	1.760e^-4	0.434	SYNONYMOUS_CODING dah	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15224004	X_15224004_SNP [dm3] X_15329971_SNP [dm6]	T	C	1.760e^-4	0.434	SYNONYMOUS_CODING dah DOWNSTREAM CG9114	TF binding site mE1_TFBS_chinmo
X	15224058	X_15224058_SNP [dm3] X_15330025_SNP [dm6]	T	C	1.760e^-4	0.434	SYNONYMOUS_CODING dah DOWNSTREAM CG9114	TF binding site mE1_TFBS_chinmo
X	15224088	X_15224088_SNP [dm3] X_15330055_SNP [dm6]	T	G	1.760e^-4	0.434	SPLICE_SITE_REGION dah DOWNSTREAM CG9114 INTRON dah	TF binding site mE1_TFBS_chinmo
X	15224104	X_15224104_SNP [dm3] X_15330071_SNP [dm6]	C	T	1.760e^-4	0.434	DOWNSTREAM CG9114 INTRON dah	TF binding site mE1_TFBS_chinmo
2L	14726083	2L_14726083_SNP [dm3] 2L_14726083_SNP [dm6]	T	A	1.768e^-4	0.434	SYNONYMOUS_CODING CG42685
2L	14728374	2L_14728374_SNP [dm3] 2L_14728374_SNP [dm6]	A	T	1.768e^-4	0.434	SYNONYMOUS_CODING CG42685
2L	14730981	2L_14730981_SNP [dm3] 2L_14730981_SNP [dm6]	T	C	1.768e^-4	0.434	UPSTREAM CG42685 INTERGENIC
3R	11504184	3R_11504184_SNP [dm3] 3R_15678462_SNP [dm6]	G	C	1.772e^-4	0.434	INTRON pxb
3L	10738346	3L_10738346_SNP [dm3] 3L_10745246_SNP [dm6]	A	C	1.776e^-4	0.434	INTERGENIC
2L	3490353	2L_3490353_SNP [dm3] 2L_3490353_SNP [dm6]	G	A	1.779e^-4	0.434	INTRON CG15414
2R	7287589	2R_7287589_SNP [dm3] 2R_11400084_SNP [dm6]	G	T	1.779e^-4	0.434	UPSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	7288981	2R_7288981_SNP [dm3] 2R_11401476_SNP [dm6]	T	C	1.779e^-4	0.434	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	15730765	2R_15730765_SNP [dm3] 2R_19843260_SNP [dm6]	C	T	1.786e^-4	0.435	UTR_5_PRIME CG44569	TF binding site mE1_TFBS_Kr
3L	9863947	3L_9863947_SNP [dm3] 3L_9870847_SNP [dm6]	C	G	1.789e^-4	0.435	DOWNSTREAM CG8108 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2732665	3L_2732665_SNP [dm3] 3L_2732665_SNP [dm6]	A	G	1.801e^-4	0.437	INTRON Mrtf
X	20431545	X_20431545_SNP [dm3] X_20560518_SNP [dm6]	A	T	1.806e^-4	0.438	INTRON RunxB
2R	17049637	2R_17049637_SNP [dm3] 2R_21162132_SNP [dm6]	C	A	1.812e^-4	0.438	UTR_3_PRIME CG4266 UPSTREAM tRNA:CR30206 & 1 other DOWNSTREAM tRNA:CR30208	TF binding site mE1_TFBS_inv
2L	1085906	2L_1085906_SNP [dm3] 2L_1085906_SNP [dm6]	G	T	1.822e^-4	0.438	DOWNSTREAM Atg4a INTRON CG4629	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	7941788	2L_7941788_SNP [dm3] 2L_7941788_SNP [dm6]	C	T	1.825e^-4	0.438	INTRON Snoo
X	21857748	X_21857748_DEL [dm3] X_22455912_DEL [dm6]	AA	A	1.826e^-4	0.438	UTR_5_PRIME CG14619 UPSTREAM wap & 1 other INTRON CG14619	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5846122	3L_5846122_SNP [dm3] 3L_5853022_SNP [dm6]	C	T	1.827e^-4	0.438	INTERGENIC
2L	1198197	2L_1198197_SNP [dm3] 2L_1198197_SNP [dm6]	C	T	1.831e^-4	0.438	DOWNSTREAM CG5139 INTERGENIC
3L	17955002	3L_17955002_SNP [dm3] 3L_17961902_SNP [dm6]	T	C	1.833e^-4	0.438	UPSTREAM Eip75B INTRON Eip75B
3R	4402048	3R_4402048_SNP [dm3] 3R_8576326_SNP [dm6]	A	G	1.834e^-4	0.438	INTERGENIC
3R	19133355	3R_19133355_SNP [dm3] 3R_23307633_SNP [dm6]	C	T	1.834e^-4	0.438	INTRON pnt
3L	7390683	3L_7390683_SNP [dm3] 3L_7397583_SNP [dm6]	G	C	1.836e^-4	0.438	UPSTREAM CG8562 INTRON CG32379
3L	7390686	3L_7390686_SNP [dm3] 3L_7397586_SNP [dm6]	A	G	1.836e^-4	0.438	UPSTREAM CG8562 INTRON CG32379
3L	7390694	3L_7390694_SNP [dm3] 3L_7397594_SNP [dm6]	G	A	1.836e^-4	0.438	UPSTREAM CG8562 INTRON CG32379
2L	10419082	2L_10419082_SNP [dm3] 2L_10419082_SNP [dm6]	C	A	1.837e^-4	0.438	UPSTREAM RfC3 DOWNSTREAM Klp31E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk
3R	2699171	3R_2699171_SNP [dm3] 3R_6873449_SNP [dm6]	C	T	1.837e^-4	0.438	INTERGENIC	regulatory region FlyBase REDfly_CRMs
X	18320291	X_18320291_INS [dm3] X_18426258_INS [dm6]	T	TCTCCC	1.847e^-4	0.439	INTRON CG42323
2L	4224178	2L_4224178_SNP [dm3] 2L_4224178_SNP [dm6]	T	A	1.850e^-4	0.439	DOWNSTREAM CG3702 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	14691080	3R_14691080_SNP [dm3] 3R_18865358_SNP [dm6]	C	A	1.853e^-4	0.439	INTERGENIC
3R	14691081	3R_14691081_SNP [dm3] 3R_18865359_SNP [dm6]	C	T	1.853e^-4	0.439	INTERGENIC
2L	17961962	2L_17961962_SNP [dm3] 2L_17961962_SNP [dm6]	G	A	1.861e^-4	0.441	DOWNSTREAM btv INTERGENIC
3L	2674894	3L_2674894_SNP [dm3] 3L_2674894_SNP [dm6]	A	T	1.865e^-4	0.441	INTRON Fife
2R	19772066	2R_19772066_SNP [dm3] 2R_23884543_SNP [dm6]	T	C	1.867e^-4	0.441	UPSTREAM PHDP INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	11497941	3R_11497941_SNP [dm3] 3R_15672219_SNP [dm6]	T	C	1.870e^-4	0.441	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
X	16087399	X_16087399_SNP [dm3] X_16193366_SNP [dm6]	G	T	1.873e^-4	0.441	INTERGENIC
2R	19769850	2R_19769850_SNP [dm3] 2R_23882327_SNP [dm6]	T	C	1.873e^-4	0.441	UTR_5_PRIME CG4882 DOWNSTREAM PHDP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
4	1006792	4_1006792_SNP [dm3] 4_986166_SNP [dm6]	C	A	1.886e^-4	0.443	INTERGENIC	regulatory region REDfly_CRMs
2L	9712051	2L_9712051_SNP [dm3] 2L_9712051_SNP [dm6]	G	A	1.889e^-4	0.443	UTR_3_PRIME Nckx30C UPSTREAM CG4364 DOWNSTREAM Nckx30C	TF binding site mE1_TFBS_HSA
2R	8452871	2R_8452871_SNP [dm3] 2R_12565366_SNP [dm6]	C	T	1.889e^-4	0.443	UPSTREAM CG33775 & 1 other INTERGENIC
2L	18742868	2L_18742868_SNP [dm3] 2L_18742868_SNP [dm6]	G	T	1.894e^-4	0.443	INTERGENIC
X	18106505	X_18106505_SNP [dm3] X_18212472_SNP [dm6]	G	A	1.904e^-4	0.445	UTR_3_PRIME CG33639 DOWNSTREAM CG33639	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27771956	3R_27771956_SNP [dm3] 3R_31946234_SNP [dm6]	C	A	1.908e^-4	0.445	INTRON heph	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2401374	3L_2401374_SNP [dm3] 3L_2401374_SNP [dm6]	T	G	1.909e^-4	0.445	INTRON CG45186
X	22139519	X_22139519_SNP [dm3] X_22737683_SNP [dm6]	C	A	1.915e^-4	0.446	INTRON CR44997
3R	21861239	3R_21861239_SNP [dm3] 3R_26035517_SNP [dm6]	A	G	1.916e^-4	0.446	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4426398	3L_4426398_SNP [dm3] 3L_4426398_SNP [dm6]	C	T	1.920e^-4	0.446	UTR_3_PRIME CG15020
X	16231614	X_16231614_SNP [dm3] X_16337581_SNP [dm6]	G	A	1.928e^-4	0.446	INTRON Dsp1	TF binding site mE1_TFBS_cad
3R	22181316	3R_22181316_SNP [dm3] 3R_26355594_SNP [dm6]	T	C	1.929e^-4	0.446	SPLICE_SITE_REGION CG33970 INTRON CG33970
3R	22181317	3R_22181317_INS [dm3] 3R_26355595_INS [dm6]	T	TATACA	1.929e^-4	0.446	SPLICE_SITE_REGION CG33970 INTRON CG33970
2L	4741076	2L_4741076_SNP [dm3] 2L_4741076_SNP [dm6]	T	C	1.930e^-4	0.446	INTRON CG15630
3L	15250286	3L_15250286_SNP [dm3] 3L_15257186_SNP [dm6]	G	C	1.934e^-4	0.446	INTERGENIC
3R	23307575	3R_23307575_SNP [dm3] 3R_27481853_SNP [dm6]	C	T	1.943e^-4	0.447	UTR_3_PRIME Cyp6a18
3L	17423996	3L_17423996_SNP [dm3] 3L_17430896_SNP [dm6]	G	T	1.943e^-4	0.447	START_GAINED CG32174 UTR_5_PRIME CG32174 UTR_3_PRIME frc DOWNSTREAM frc INTRON CG32174	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8452999	2R_8452999_SNP [dm3] 2R_12565494_SNP [dm6]	A	C	1.946e^-4	0.448	UPSTREAM CG33775 & 1 other INTERGENIC
2L	6816114	2L_6816114_SNP [dm3] 2L_6816114_SNP [dm6]	A	G	1.960e^-4	0.45	INTERGENIC	TF binding site mE1_TFBS_inv
3R	26778450	3R_26778450_SNP [dm3] 3R_30952728_SNP [dm6]	C	A	1.963e^-4	0.45	INTERGENIC
2R	4650369	2R_4650369_SNP [dm3] 2R_8762864_SNP [dm6]	G	A	1.966e^-4	0.45	INTERGENIC
X	14999532	X_14999532_INS [dm3] X_15105499_INS [dm6]	G	ATACA	1.975e^-4	0.451	INTRON Rab3-GEF	TF binding site BDTNP1_TFBS_dl
2R	10475447	2R_10475447_SNP [dm3] 2R_14587942_SNP [dm6]	A	G	1.975e^-4	0.451	DOWNSTREAM ttv INTERGENIC
3L	17554388	3L_17554388_SNP [dm3] 3L_17561288_SNP [dm6]	C	T	1.979e^-4	0.451	UTR_3_PRIME Eip74EF
2R	16710666	2R_16710666_SNP [dm3] 2R_20823161_SNP [dm6]	G	A	1.981e^-4	0.451	INTRON insc	TF binding site mE1_TFBS_chinmo
2R	16710671	2R_16710671_SNP [dm3] 2R_20823166_SNP [dm6]	G	C	1.981e^-4	0.451	INTRON insc	TF binding site mE1_TFBS_chinmo
2R	2475086	2R_2475086_SNP [dm3] 2R_6587581_SNP [dm6]	C	A	1.984e^-4	0.451	INTRON jing
X	19877488	X_19877488_SNP [dm3] X_19983455_SNP [dm6]	G	C	1.992e^-4	0.452	INTERGENIC
2R	15757525	2R_15757525_SNP [dm3] 2R_19870020_SNP [dm6]	T	C	1.994e^-4	0.452	DOWNSTREAM CR44460 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_inv mE1_TFBS_sens
2R	2691267	2R_2691267_SNP [dm3] 2R_6803762_SNP [dm6]	G	A	2.001e^-4	0.453	INTERGENIC
X	6112547	X_6112547_SNP [dm3] X_6218514_SNP [dm6]	T	C	2.002e^-4	0.453	NON_SYNONYMOUS_CODING Btd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21267912	3R_21267912_SNP [dm3] 3R_25442190_SNP [dm6]	G	C	2.025e^-4	0.457	INTRON Fur1	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	1528524	3L_1528524_SNP [dm3] 3L_1528524_SNP [dm6]	T	A	2.028e^-4	0.457	DOWNSTREAM Ir62a INTRON CG12090	TF binding site mE1_TFBS_cad
3L	3115965	3L_3115965_SNP [dm3] 3L_3115965_SNP [dm6]	C	T	2.034e^-4	0.457	SYNONYMOUS_CODING prominin-like
X	15211167	X_15211167_SNP [dm3] X_15317134_SNP [dm6]	A	T	2.035e^-4	0.457	NON_SYNONYMOUS_CODING gce EXON CR44961	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
X	16359482	X_16359482_SNP [dm3] X_16465449_SNP [dm6]	A	G	2.036e^-4	0.457	INTRON para
2R	7000651	2R_7000651_SNP [dm3] 2R_11113146_SNP [dm6]	A	T	2.037e^-4	0.457	INTRON luna
2L	9163514	2L_9163514_SNP [dm3] 2L_9163514_SNP [dm6]	A	G	2.038e^-4	0.457	UTR_3_PRIME CG32982 UPSTREAM CG13108
2L	9163515	2L_9163515_SNP [dm3] 2L_9163515_SNP [dm6]	T	C	2.038e^-4	0.457	UTR_3_PRIME CG32982 UPSTREAM CG13108
2R	14843425	2R_14843425_SNP [dm3] 2R_18955920_SNP [dm6]	G	A	2.040e^-4	0.457	SYNONYMOUS_CODING sano	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6986848	2L_6986848_SNP [dm3] 2L_6986848_SNP [dm6]	A	G	2.042e^-4	0.457	DOWNSTREAM CR44326 INTRON uif
3L	7387267	3L_7387267_SNP [dm3] 3L_7394167_SNP [dm6]	C	T	2.050e^-4	0.458	SYNONYMOUS_CODING CG8563	TF binding site mE1_TFBS_cad
2L	1586379	2L_1586379_SNP [dm3] 2L_1586379_SNP [dm6]	C	A	2.058e^-4	0.458	SYNONYMOUS_CODING CG10869 INTRON haf	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	8912768	X_8912768_SNP [dm3] X_9018735_SNP [dm6]	C	T	2.059e^-4	0.458	INTRON CR43836 & 1 other
3L	20856998	3L_20856998_SNP [dm3] 3L_20863898_SNP [dm6]	C	A	2.064e^-4	0.458	INTRON CG32432
2L	6849321	2L_6849321_SNP [dm3] 2L_6849321_SNP [dm6]	C	T	2.066e^-4	0.458	INTERGENIC
2L	21942647	2L_21942647_SNP [dm3] 2L_21942647_SNP [dm6]	G	T	2.066e^-4	0.458	INTERGENIC
2R	12267602	2R_12267602_SNP [dm3] 2R_16380097_SNP [dm6]	C	A	2.067e^-4	0.458	UPSTREAM CG43187 EXON CR45316 & 1 other
3R	26778452	3R_26778452_SNP [dm3] 3R_30952730_SNP [dm6]	A	T	2.074e^-4	0.458	INTERGENIC
2R	8135951	2R_8135951_SNP [dm3] 2R_12248446_SNP [dm6]	T	G	2.077e^-4	0.458	INTERGENIC
2L	1215642	2L_1215642_DEL [dm3] 2L_1215642_DEL [dm6]	TTGTAT	T	2.078e^-4	0.458	UPSTREAM CR45346 INTERGENIC
3L	2832115	3L_2832115_SNP [dm3] 3L_2832115_SNP [dm6]	C	G	2.080e^-4	0.458	INTRON CG43444
2L	16059753	2L_16059753_SNP [dm3] 2L_16059753_SNP [dm6]	A	T	2.081e^-4	0.458	INTRON beat-Ia
2L	16059754	2L_16059754_SNP [dm3] 2L_16059754_SNP [dm6]	T	A	2.081e^-4	0.458	INTRON beat-Ia
2R	7279947	2R_7279947_SNP [dm3] 2R_11392442_SNP [dm6]	G	A	2.081e^-4	0.458	INTRON sprt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4141969	X_4141969_SNP [dm3] X_4247936_SNP [dm6]	G	C	2.090e^-4	0.459	UPSTREAM CG43135 DOWNSTREAM CG43134 INTERGENIC
3R	8600644	3R_8600644_SNP [dm3] 3R_12774922_SNP [dm6]	C	T	2.110e^-4	0.463	INTRON beat-Vc
2L	3238005	2L_3238005_SNP [dm3] 2L_3238005_SNP [dm6]	A	T	2.114e^-4	0.463	INTERGENIC
3L	13497702	3L_13497702_SNP [dm3] 3L_13504602_SNP [dm6]	A	G	2.117e^-4	0.463	SYNONYMOUS_CODING Spt20	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10329632	3L_10329632_SNP [dm3] 3L_10336532_SNP [dm6]	A	T	2.118e^-4	0.463	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad
2R	9134792	2R_9134792_SNP [dm3] 2R_13247287_SNP [dm6]	G	A	2.132e^-4	0.465	INTRON Mp20	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9047902	3L_9047902_DEL [dm3] 3L_9054802_DEL [dm6]	GAG	G	2.136e^-4	0.465	INTRON Argk	TF binding site mE1_TFBS_bab1 mE1_TFBS_Kr
2R	14686325	2R_14686325_SNP [dm3] 2R_18798820_SNP [dm6]	A	T	2.136e^-4	0.465	INTRON l_2_08717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	21391070	3R_21391070_INS [dm3] 3R_25565348_INS [dm6]	A	ACA	2.138e^-4	0.465	INTRON msi
3R	12374632	3R_12374632_SNP [dm3] 3R_16548910_SNP [dm6]	G	A	2.141e^-4	0.465	INTRON CG42342
2R	12452205	2R_12452205_SNP [dm3] 2R_16564700_SNP [dm6]	G	T	2.144e^-4	0.465	INTRON DAT	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16480284	3L_16480284_SNP [dm3] 3L_16487184_SNP [dm6]	A	G	2.152e^-4	0.466	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
3L	8721216	3L_8721216_SNP [dm3] 3L_8728116_SNP [dm6]	G	A	2.163e^-4	0.466	UPSTREAM Cp15 DOWNSTREAM Cp18 INTERGENIC
3L	8721217	3L_8721217_SNP [dm3] 3L_8728117_SNP [dm6]	A	G	2.163e^-4	0.466	UPSTREAM Cp15 DOWNSTREAM Cp18 INTERGENIC
3L	8721219	3L_8721219_SNP [dm3] 3L_8728119_SNP [dm6]	A	C	2.163e^-4	0.466	UPSTREAM Cp15 DOWNSTREAM Cp18 INTERGENIC
2R	9258456	2R_9258456_SNP [dm3] 2R_13370951_SNP [dm6]	A	G	2.164e^-4	0.466	INTERGENIC
2R	19771545	2R_19771545_SNP [dm3] 2R_23884022_SNP [dm6]	G	C	2.169e^-4	0.466	INTRON PHDP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	15527476	3R_15527476_SNP [dm3] 3R_19701754_SNP [dm6]	T	C	2.170e^-4	0.466	INTERGENIC
3L	17961829	3L_17961829_SNP [dm3] 3L_17968729_SNP [dm6]	G	C	2.171e^-4	0.466	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20625780	3R_20625780_SNP [dm3] 3R_24800058_SNP [dm6]	A	G	2.171e^-4	0.466	SYNONYMOUS_CODING polybromo UPSTREAM Ude	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	9228841	2L_9228841_SNP [dm3] 2L_9228841_SNP [dm6]	C	T	2.172e^-4	0.466	INTRON tai
3L	2674501	3L_2674501_SNP [dm3] 3L_2674501_SNP [dm6]	A	C	2.181e^-4	0.467	INTRON Fife
2R	19184001	2R_19184001_SNP [dm3] 2R_23296478_SNP [dm6]	C	A	2.196e^-4	0.47	INTERGENIC
2R	18554633	2R_18554633_DEL [dm3] 2R_22667128_DEL [dm6]	AGAGTA	A	2.197e^-4	0.47	UPSTREAM CG30273 & 2 others DOWNSTREAM CG42867 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	10298454	3L_10298454_SNP [dm3] 3L_10305354_SNP [dm6]	A	C	2.199e^-4	0.47	INTERGENIC
2L	13430666	2L_13430666_SNP [dm3] 2L_13430666_SNP [dm6]	C	T	2.216e^-4	0.473	INTRON CG42784
2L	1542650	2L_1542650_SNP [dm3] 2L_1542650_SNP [dm6]	A	C	2.220e^-4	0.473	INTERGENIC
3L	12862645	3L_12862645_SNP [dm3] 3L_12869545_SNP [dm6]	G	T	2.220e^-4	0.473	INTERGENIC
2L	3331361	2L_3331361_SNP [dm3] 2L_3331361_SNP [dm6]	G	T	2.222e^-4	0.473	INTRON CG3285
3L	11016619	3L_11016619_SNP [dm3] 3L_11023519_SNP [dm6]	T	A	2.227e^-4	0.473	UPSTREAM Fad2 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	3860574	2R_3860574_SNP [dm3] 2R_7973069_SNP [dm6]	T	C	2.234e^-4	0.473	SYNONYMOUS_CODING CSN4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6726485	2R_6726485_SNP [dm3] 2R_10838980_SNP [dm6]	A	C	2.234e^-4	0.473	UPSTREAM CG7686 DOWNSTREAM CG30015 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22181239	3R_22181239_SNP [dm3] 3R_26355517_SNP [dm6]	C	G	2.238e^-4	0.474	INTRON CG33970
3R	16330847	3R_16330847_SNP [dm3] 3R_20505125_SNP [dm6]	T	C	2.240e^-4	0.474	SYNONYMOUS_CODING Or92a
2L	14574204	2L_14574204_SNP [dm3] 2L_14574204_SNP [dm6]	A	G	2.246e^-4	0.474	INTERGENIC
3L	8576108	3L_8576108_SNP [dm3] 3L_8583008_SNP [dm6]	A	T	2.254e^-4	0.474	UPSTREAM CG43078 INTRON CG43078
3L	8576112	3L_8576112_SNP [dm3] 3L_8583012_SNP [dm6]	G	C	2.254e^-4	0.474	UPSTREAM CG43078 INTRON CG43078
3L	8576116	3L_8576116_SNP [dm3] 3L_8583016_SNP [dm6]	C	G	2.254e^-4	0.474	UPSTREAM CG43078 INTRON CG43078
3L	7754165	3L_7754165_SNP [dm3] 3L_7761065_SNP [dm6]	T	A	2.256e^-4	0.474	UTR_5_PRIME Hn UPSTREAM Hn INTRON Hn
2L	16043514	2L_16043514_SNP [dm3] 2L_16043514_SNP [dm6]	C	G	2.267e^-4	0.476	INTRON BicC & 1 other
3L	2618220	3L_2618220_SNP [dm3] 3L_2618220_SNP [dm6]	C	T	2.279e^-4	0.477	INTRON Pxn
2R	12251404	2R_12251404_SNP [dm3] 2R_16363899_SNP [dm6]	C	T	2.280e^-4	0.477	SYNONYMOUS_CODING CG15711 DOWNSTREAM CG6262
3L	8652332	3L_8652332_SNP [dm3] 3L_8659232_SNP [dm6]	T	C	2.282e^-4	0.477	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15159539	2R_15159539_SNP [dm3] 2R_19272034_SNP [dm6]	A	T	2.284e^-4	0.477	INTRON rib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Kr
2R	19771172	2R_19771172_SNP [dm3] 2R_23883649_SNP [dm6]	A	T	2.293e^-4	0.479	UPSTREAM CG4882 INTRON PHDP
3L	291762	3L_291762_SNP [dm3] 3L_291762_SNP [dm6]	G	T	2.300e^-4	0.48	UPSTREAM RhoGEF3 INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	8896389	3L_8896389_SNP [dm3] 3L_8903289_SNP [dm6]	C	A	2.320e^-4	0.483	UPSTREAM tRNA:T:Psi INTRON TrpA1
X	19877360	X_19877360_SNP [dm3] X_19983327_SNP [dm6]	T	G	2.323e^-4	0.483	INTERGENIC
X	19877362	X_19877362_SNP [dm3] X_19983329_SNP [dm6]	C	A	2.323e^-4	0.483	INTERGENIC
2L	9169873	2L_9169873_SNP [dm3] 2L_9169873_SNP [dm6]	A	C	2.327e^-4	0.483	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12039591	X_12039591_SNP [dm3] X_12145558_SNP [dm6]	A	T	2.330e^-4	0.483	INTRON Ten-a
3R	27742261	3R_27742261_SNP [dm3] 3R_31916539_SNP [dm6]	G	A	2.332e^-4	0.483	INTRON heph
2R	6886324	2R_6886324_SNP [dm3] 2R_10998819_SNP [dm6]	T	A	2.336e^-4	0.483	INTRON luna
2R	15197848	2R_15197848_SNP [dm3] 2R_19310343_SNP [dm6]	C	T	2.338e^-4	0.483	DOWNSTREAM Rgk1 INTRON EndoB	TF binding site mE1_TFBS_sens
3L	7553953	3L_7553953_SNP [dm3] 3L_7560853_SNP [dm6]	G	A	2.342e^-4	0.483	UPSTREAM CG14837 INTERGENIC
3R	21409120	3R_21409120_SNP [dm3] 3R_25583398_SNP [dm6]	T	G	2.344e^-4	0.483	UPSTREAM CG4582 INTRON msi
3L	11547366	3L_11547366_SNP [dm3] 3L_11554266_SNP [dm6]	A	C	2.350e^-4	0.484	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	12493647	2R_12493647_SNP [dm3] 2R_16606142_SNP [dm6]	T	C	2.351e^-4	0.484	INTERGENIC
2L	9851118	2L_9851118_SNP [dm3] 2L_9851118_SNP [dm6]	G	C	2.353e^-4	0.484	INTRON nAChRalpha6
3L	15375668	3L_15375668_INS [dm3] 3L_15382568_INS [dm6]	G	GATC	2.355e^-4	0.484	INTERGENIC
2L	11185403	2L_11185403_SNP [dm3] 2L_11185403_SNP [dm6]	G	A	2.360e^-4	0.484	INTRON Ca-beta	TF binding site BDTNP1_TFBS_prd
2R	14009822	2R_14009822_SNP [dm3] 2R_18122317_SNP [dm6]	T	G	2.382e^-4	0.488	NON_SYNONYMOUS_CODING stau	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15271806	2R_15271806_SNP [dm3] 2R_19384301_SNP [dm6]	C	T	2.382e^-4	0.488	NON_SYNONYMOUS_CODING CG10073
3L	11026988	3L_11026988_DEL [dm3] 3L_11033888_DEL [dm6]	AAATCACCCATAGCCACCGA...	A	2.391e^-4	0.489	UPSTREAM CR44547 INTERGENIC	TF binding site mE1_TFBS_cad
2R	14009804	2R_14009804_SNP [dm3] 2R_18122299_SNP [dm6]	C	T	2.400e^-4	0.49	NON_SYNONYMOUS_CODING stau	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11293944	2L_11293944_DEL [dm3] 2L_11293944_DEL [dm6]	ACATA	A	2.422e^-4	0.494	INTERGENIC
3L	6437808	3L_6437808_SNP [dm3] 3L_6444708_SNP [dm6]	T	C	2.423e^-4	0.494	INTRON CG42747
3L	4133180	3L_4133180_SNP [dm3] 3L_4133180_SNP [dm6]	G	A	2.426e^-4	0.494	INTRON ens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16278682	3R_16278682_SNP [dm3] 3R_20452960_SNP [dm6]	G	T	2.428e^-4	0.494	INTRON Gfrl
3L	18082040	3L_18082040_SNP [dm3] 3L_18088940_SNP [dm6]	T	C	2.439e^-4	0.495	UTR_3_PRIME CG13698 DOWNSTREAM CG13698
2L	5147461	2L_5147461_SNP [dm3] 2L_5147461_SNP [dm6]	C	A	2.440e^-4	0.495	INTRON Msp300
3L	19072143	3L_19072143_SNP [dm3] 3L_19079043_SNP [dm6]	C	A	2.447e^-4	0.495	INTRON Mkp3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15508218	2L_15508218_SNP [dm3] 2L_15508218_SNP [dm6]	A	C	2.454e^-4	0.495	INTERGENIC
X	3233846	X_3233846_SNP [dm3] X_3339813_SNP [dm6]	C	A	2.455e^-4	0.495	UTR_3_PRIME dnc DOWNSTREAM dnc INTRON CR44886
3L	8394808	3L_8394808_SNP [dm3] 3L_8401708_SNP [dm6]	A	G	2.456e^-4	0.495	SYNONYMOUS_CODING CG7120 DOWNSTREAM mkg-p & 1 other	TF binding site mE1_TFBS_cad
2L	10657608	2L_10657608_INS [dm3] 2L_10657608_INS [dm6]	C	CC	2.459e^-4	0.495	UPSTREAM CR45692 & 1 other INTERGENIC
X	4193048	X_4193048_SNP [dm3] X_4299015_SNP [dm6]	A	G	2.468e^-4	0.495	INTERGENIC
X	4193055	X_4193055_SNP [dm3] X_4299022_SNP [dm6]	C	T	2.468e^-4	0.495	INTERGENIC
3L	1548625	3L_1548625_SNP [dm3] 3L_1548625_SNP [dm6]	A	G	2.471e^-4	0.495	INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9612868	2R_9612868_SNP [dm3] 2R_13725363_SNP [dm6]	T	C	2.472e^-4	0.495	INTRON fas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5686554	3L_5686554_SNP [dm3] 3L_5693454_SNP [dm6]	G	A	2.473e^-4	0.495	INTRON sif
X	11600947	X_11600947_SNP [dm3] X_11706914_SNP [dm6]	A	G	2.475e^-4	0.495	UTR_3_PRIME FucT6	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	26178717	3R_26178717_SNP [dm3] 3R_30352995_SNP [dm6]	A	C	2.478e^-4	0.495	INTRON hdc
2L	21201246	2L_21201246_SNP [dm3] 2L_21201246_SNP [dm6]	G	T	2.480e^-4	0.495	UPSTREAM CG31624 DOWNSTREAM CG31988 INTERGENIC
3R	12366106	3R_12366106_SNP [dm3] 3R_16540384_SNP [dm6]	T	C	2.480e^-4	0.495	INTRON CG42342
X	12378487	X_12378487_SNP [dm3] X_12484454_SNP [dm6]	T	C	2.483e^-4	0.495	INTERGENIC
2L	8001812	2L_8001812_SNP [dm3] 2L_8001812_SNP [dm6]	C	G	2.484e^-4	0.495	INTRON Wwox
2R	2425337	2R_2425337_SNP [dm3] 2R_6537832_SNP [dm6]	C	T	2.485e^-4	0.495	INTRON jing	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	2425342	2R_2425342_SNP [dm3] 2R_6537837_SNP [dm6]	A	G	2.485e^-4	0.495	INTRON jing	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6811164	2R_6811164_SNP [dm3] 2R_10923659_SNP [dm6]	T	G	2.491e^-4	0.495	INTERGENIC
2L	3691652	2L_3691652_SNP [dm3] 2L_3691652_SNP [dm6]	C	A	2.503e^-4	0.495	UTR_3_PRIME CG34340 DOWNSTREAM CG16704
2R	15858788	2R_15858788_SNP [dm3] 2R_19971283_SNP [dm6]	G	A	2.520e^-4	0.495	INTERGENIC
3L	18081903	3L_18081903_SNP [dm3] 3L_18088803_SNP [dm6]	C	T	2.538e^-4	0.495	UTR_3_PRIME CG13698 DOWNSTREAM CG13698
2L	5247540	2L_5247540_SNP [dm3] 2L_5247540_SNP [dm6]	C	T	2.551e^-4	0.495	INTRON tkv
2L	7703550	2L_7703550_SNP [dm3] 2L_7703550_SNP [dm6]	G	A	2.552e^-4	0.495	INTRON Tep3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7703761	2L_7703761_SNP [dm3] 2L_7703761_SNP [dm6]	T	A	2.552e^-4	0.495	INTRON Tep3
3R	1872012	3R_1872012_SNP [dm3] 3R_6046290_SNP [dm6]	A	T	2.555e^-4	0.495	INTERGENIC
2R	2475004	2R_2475004_SNP [dm3] 2R_6587499_SNP [dm6]	C	T	2.566e^-4	0.495	INTRON jing
2R	6442622	2R_6442622_SNP [dm3] 2R_10555117_SNP [dm6]	T	A	2.573e^-4	0.495	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2L	8001879	2L_8001879_SNP [dm3] 2L_8001879_SNP [dm6]	A	T	2.582e^-4	0.495	INTRON Wwox
2R	7102996	2R_7102996_SNP [dm3] 2R_11215491_SNP [dm6]	G	A	2.587e^-4	0.495	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19771158	2R_19771158_SNP [dm3] 2R_23883635_SNP [dm6]	A	T	2.587e^-4	0.495	UPSTREAM CG4882 INTRON PHDP
3L	11507443	3L_11507443_SNP [dm3] 3L_11514343_SNP [dm6]	A	T	2.591e^-4	0.495	DOWNSTREAM Sgs3 INTRON CG7512
2L	1465181	2L_1465181_DEL [dm3] 2L_1465181_DEL [dm6]	TT	T	2.592e^-4	0.495	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_sens
2L	6297840	2L_6297840_SNP [dm3] 2L_6297840_SNP [dm6]	C	T	2.593e^-4	0.495	INTRON Ddr
2L	6297874	2L_6297874_SNP [dm3] 2L_6297874_SNP [dm6]	C	A	2.593e^-4	0.495	INTRON Ddr
2L	6297880	2L_6297880_SNP [dm3] 2L_6297880_SNP [dm6]	C	T	2.593e^-4	0.495	INTRON Ddr
X	22133718	X_22133718_SNP [dm3] X_22731882_SNP [dm6]	A	C	2.597e^-4	0.495	INTRON CR44997
2L	10030079	2L_10030079_SNP [dm3] 2L_10030079_SNP [dm6]	T	C	2.616e^-4	0.495	DOWNSTREAM CG13127 INTERGENIC
3R	9530521	3R_9530521_SNP [dm3] 3R_13704799_SNP [dm6]	C	T	2.618e^-4	0.495	SYNONYMOUS_CODING Adgf-D
2R	14549901	2R_14549901_SNP [dm3] 2R_18662396_SNP [dm6]	G	T	2.619e^-4	0.495	UPSTREAM Gint3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6128519	2R_6128519_SNP [dm3] 2R_10241014_SNP [dm6]	T	A	2.621e^-4	0.495	UTR_5_PRIME Hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	10959637	X_10959637_SNP [dm3] X_11065604_SNP [dm6]	C	T	2.633e^-4	0.495	UPSTREAM CR45614 & 1 other INTERGENIC
3L	10234068	3L_10234068_SNP [dm3] 3L_10240968_SNP [dm6]	A	G	2.639e^-4	0.495	DOWNSTREAM CR45403 INTERGENIC
X	3108247	X_3108247_SNP [dm3] X_3214214_SNP [dm6]	G	T	2.643e^-4	0.495	INTRON dnc
2R	15197104	2R_15197104_SNP [dm3] 2R_19309599_SNP [dm6]	A	G	2.648e^-4	0.495	INTRON EndoB
2R	15197145	2R_15197145_SNP [dm3] 2R_19309640_SNP [dm6]	G	A	2.648e^-4	0.495	INTRON EndoB
2R	15197157	2R_15197157_SNP [dm3] 2R_19309652_SNP [dm6]	G	A	2.648e^-4	0.495	INTRON EndoB
2R	15197313	2R_15197313_SNP [dm3] 2R_19309808_SNP [dm6]	C	T	2.648e^-4	0.495	SPLICE_SITE_REGION EndoB INTRON EndoB	TF binding site mE1_TFBS_sens
2R	20141332	2R_20141332_SNP [dm3] 2R_24253809_SNP [dm6]	T	C	2.648e^-4	0.495	INTRON nord	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20141385	2R_20141385_SNP [dm3] 2R_24253862_SNP [dm6]	A	T	2.648e^-4	0.495	SPLICE_SITE_REGION nord INTRON nord	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20141386	2R_20141386_SNP [dm3] 2R_24253863_SNP [dm6]	A	C	2.648e^-4	0.495	SPLICE_SITE_REGION nord INTRON nord	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20141573	2R_20141573_SNP [dm3] 2R_24254050_SNP [dm6]	T	C	2.648e^-4	0.495	INTRON nord	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20141687	2R_20141687_SNP [dm3] 2R_24254164_SNP [dm6]	T	A	2.648e^-4	0.495	NON_SYNONYMOUS_CODING nord	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20141734	2R_20141734_SNP [dm3] 2R_24254211_SNP [dm6]	A	G	2.648e^-4	0.495	INTRON nord	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5515454	2R_5515454_DEL [dm3] 2R_9627949_DEL [dm6]	TT	T	2.648e^-4	0.495	INTRON Mmp2
2R	9311660	2R_9311660_SNP [dm3] 2R_13424155_SNP [dm6]	G	C	2.648e^-4	0.495	UTR_5_PRIME CG42321 UPSTREAM CG30060 INTRON CG42321	TF binding site mE1_TFBS_HSA
2R	9312148	2R_9312148_SNP [dm3] 2R_13424643_SNP [dm6]	A	T	2.648e^-4	0.495	UTR_5_PRIME CG42321 UPSTREAM CG30060 INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12856645	3L_12856645_SNP [dm3] 3L_12863545_SNP [dm6]	C	T	2.648e^-4	0.495	UPSTREAM CG10943 INTERGENIC
3L	12858407	3L_12858407_SNP [dm3] 3L_12865307_SNP [dm6]	T	C	2.648e^-4	0.495	INTERGENIC
3L	12859815	3L_12859815_INS [dm3] 3L_12866715_INS [dm6]	T	TC	2.648e^-4	0.495	INTERGENIC
3L	12860304	3L_12860304_SNP [dm3] 3L_12867204_SNP [dm6]	G	T	2.648e^-4	0.495	INTERGENIC
3L	12861133	3L_12861133_SNP [dm3] 3L_12868033_SNP [dm6]	C	T	2.648e^-4	0.495	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	12861615	3L_12861615_SNP [dm3] 3L_12868515_SNP [dm6]	C	T	2.648e^-4	0.495	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	6754380	3L_6754380_SNP [dm3] 3L_6761280_SNP [dm6]	G	T	2.648e^-4	0.495	UPSTREAM CG32392 INTRON CG32392
3L	7509981	3L_7509981_SNP [dm3] 3L_7516881_SNP [dm6]	G	C	2.648e^-4	0.495	UTR_3_PRIME CG7546
3L	9910939	3L_9910939_SNP [dm3] 3L_9917839_SNP [dm6]	T	G	2.648e^-4	0.495	INTRON CG34356
X	4078594	X_4078594_SNP [dm3] X_4184561_SNP [dm6]	A	C	2.648e^-4	0.495	INTRON Fas2
2L	4220759	2L_4220759_SNP [dm3] 2L_4220759_SNP [dm6]	C	T	2.650e^-4	0.495	INTRON ft	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	6426691	2L_6426691_SNP [dm3] 2L_6426691_SNP [dm6]	A	T	2.655e^-4	0.495	DOWNSTREAM CG9527 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	14706554	2R_14706554_SNP [dm3] 2R_18819049_SNP [dm6]	T	A	2.656e^-4	0.495	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7552301	2L_7552301_SNP [dm3] 2L_7552301_SNP [dm6]	T	G	2.656e^-4	0.495	INTRON RapGAP1
3R	26178392	3R_26178392_SNP [dm3] 3R_30352670_SNP [dm6]	G	A	2.658e^-4	0.495	INTRON hdc
2R	10250677	2R_10250677_SNP [dm3] 2R_14363172_SNP [dm6]	C	T	2.661e^-4	0.495	UTR_5_PRIME Tfb1 DOWNSTREAM Arc2 INTRON Tfb1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7390673	3L_7390673_SNP [dm3] 3L_7397573_SNP [dm6]	T	G	2.665e^-4	0.495	UPSTREAM CG8562 INTRON CG32379
3L	4086336	3L_4086336_SNP [dm3] 3L_4086336_SNP [dm6]	T	C	2.669e^-4	0.495	UPSTREAM Gad1 INTRON Gad1
3L	4086337	3L_4086337_SNP [dm3] 3L_4086337_SNP [dm6]	G	A	2.669e^-4	0.495	UPSTREAM Gad1 INTRON Gad1
3L	11418356	3L_11418356_SNP [dm3] 3L_11425256_SNP [dm6]	C	G	2.674e^-4	0.495	SYNONYMOUS_CODING CG7560	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21403151	3R_21403151_SNP [dm3] 3R_25577429_SNP [dm6]	G	A	2.674e^-4	0.495	INTRON msi
3R	21861741	3R_21861741_SNP [dm3] 3R_26036019_SNP [dm6]	C	G	2.674e^-4	0.495	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26450780	3R_26450780_SNP [dm3] 3R_30625058_SNP [dm6]	G	A	2.674e^-4	0.495	EXON CR44136	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	26502248	3R_26502248_SNP [dm3] 3R_30676526_SNP [dm6]	T	A	2.674e^-4	0.495	INTERGENIC
3R	26502259	3R_26502259_SNP [dm3] 3R_30676537_SNP [dm6]	T	C	2.674e^-4	0.495	INTERGENIC
3R	3936222	3R_3936222_SNP [dm3] 3R_8110500_SNP [dm6]	G	T	2.674e^-4	0.495	INTRON puc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv

By genomic position
Variant impact
Gene name

Microbiota_OTU028 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results