DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.095e^-15)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2852 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	21914567	3R_21914567_SNP [dm3] 3R_26088845_SNP [dm6]	T	C	1.259e^-7	0.087	INTRON dys	regulatory region REDfly_CRMs
3R	21914466	3R_21914466_INS [dm3] 3R_26088744_INS [dm6]	A	AAAA	1.284e^-7	0.087	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	8154731	2R_8154731_SNP [dm3] 2R_12267226_SNP [dm6]	A	T	1.399e^-7	0.087	INTRON Cam
3L	6321402	3L_6321402_SNP [dm3] 3L_6328302_SNP [dm6]	A	G	5.847e^-7	0.176	NON_SYNONYMOUS_CODING Or65c
3R	9248835	3R_9248835_SNP [dm3] 3R_13423113_SNP [dm6]	T	G	6.905e^-7	0.176	SYNONYMOUS_CODING Ir87a
3R	23976724	3R_23976724_SNP [dm3] 3R_28151002_SNP [dm6]	G	T	7.107e^-7	0.176	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9248864	3R_9248864_SNP [dm3] 3R_13423142_SNP [dm6]	A	G	7.918e^-7	0.176	DOWNSTREAM Ir87a INTERGENIC
3L	12765716	3L_12765716_SNP [dm3] 3L_12772616_SNP [dm6]	G	A	8.166e^-7	0.176	INTRON Hip1
3R	9238940	3R_9238940_SNP [dm3] 3R_13413218_SNP [dm6]	G	A	9.388e^-7	0.176	INTRON yellow-e	TF binding site BDTNP1_TFBS_prd
X	15422572	X_15422572_SNP [dm3] X_15528539_SNP [dm6]	G	T	9.466e^-7	0.176	INTRON Ac13E
2R	2430161	2R_2430161_SNP [dm3] 2R_6542656_SNP [dm6]	C	A	1.157e^-6	0.176	INTRON jing	TF binding site mE1_TFBS_chinmo
2L	19185700	2L_19185700_SNP [dm3] 2L_19185700_SNP [dm6]	A	C	1.208e^-6	0.176	START_GAINED gammaTub37C UTR_5_PRIME gammaTub37C UPSTREAM pigeon	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	218584	3L_218584_SNP [dm3] 3L_218584_SNP [dm6]	T	C	1.326e^-6	0.176	SYNONYMOUS_CODING CG13877 UTR_3_PRIME pyx DOWNSTREAM Kaz1-ORFB
3L	176565	3L_176565_SNP [dm3] 3L_176565_SNP [dm6]	A	T	1.327e^-6	0.176	UTR_3_PRIME Vdup1 UPSTREAM CG7049	TF binding site mE1_TFBS_cad
3R	21914468	3R_21914468_SNP [dm3] 3R_26088746_SNP [dm6]	T	A	1.530e^-6	0.18	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	3045532	3R_3045532_SNP [dm3] 3R_7219810_SNP [dm6]	T	A	1.657e^-6	0.18	UPSTREAM CG14605 INTERGENIC
3R	3045257	3R_3045257_SNP [dm3] 3R_7219535_SNP [dm6]	G	A	1.688e^-6	0.18	SPLICE_SITE_REGION CG14605 START_GAINED CG14605 UTR_5_PRIME CG14605
3L	52959	3L_52959_DEL [dm3] 3L_52959_DEL [dm6]	AATTTAAGATCTACCTA...	A	1.754e^-6	0.18	DOWNSTREAM CG43149 INTERGENIC
3R	21914562	3R_21914562_SNP [dm3] 3R_26088840_SNP [dm6]	T	G	1.850e^-6	0.18	INTRON dys	regulatory region REDfly_CRMs
3L	12765727	3L_12765727_SNP [dm3] 3L_12772627_SNP [dm6]	G	A	1.983e^-6	0.18	INTRON Hip1
3L	191741	3L_191741_SNP [dm3] 3L_191741_SNP [dm6]	G	C	2.049e^-6	0.18	SYNONYMOUS_CODING rno	TF binding site mE1_TFBS_cad
3R	3084496	3R_3084496_SNP [dm3] 3R_7258774_SNP [dm6]	C	A	2.134e^-6	0.18	INTRON Gld
2R	10993803	2R_10993803_SNP [dm3] 2R_15106298_SNP [dm6]	C	T	2.517e^-6	0.189	INTERGENIC
2L	13753488	2L_13753488_SNP [dm3] 2L_13753488_SNP [dm6]	A	G	2.588e^-6	0.189	INTRON CR44846 & 1 other EXON CR44846
2R	8150334	2R_8150334_SNP [dm3] 2R_12262829_SNP [dm6]	C	A	2.697e^-6	0.189	INTRON Cam
3L	2707530	3L_2707530_SNP [dm3] 3L_2707530_SNP [dm6]	A	C	2.738e^-6	0.189	INTRON Fife
3R	21914537	3R_21914537_SNP [dm3] 3R_26088815_SNP [dm6]	A	C	2.748e^-6	0.189	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	7615605	X_7615605_SNP [dm3] X_7721572_SNP [dm6]	T	C	3.282e^-6	0.218	UPSTREAM Hira INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18908535	X_18908535_SNP [dm3] X_19014502_SNP [dm6]	G	A	4.227e^-6	0.268	INTRON CG43759
2R	8133354	2R_8133354_SNP [dm3] 2R_12245849_SNP [dm6]	G	C	4.394e^-6	0.268	DOWNSTREAM CR44315 INTERGENIC
3L	3910427	3L_3910427_SNP [dm3] 3L_3910427_SNP [dm6]	G	T	4.465e^-6	0.268	UTR_3_PRIME Eip63F-1 UPSTREAM mge
2R	17879836	2R_17879836_SNP [dm3] 2R_21992331_SNP [dm6]	G	A	4.798e^-6	0.279	INTRON CG34370
3L	7173824	3L_7173824_SNP [dm3] 3L_7180724_SNP [dm6]	T	C	5.209e^-6	0.28	INTRON Dscam2	TF binding site mE1_TFBS_inv
2R	2424244	2R_2424244_SNP [dm3] 2R_6536739_SNP [dm6]	T	C	5.371e^-6	0.28	INTRON jing
3L	8844892	3L_8844892_SNP [dm3] 3L_8851792_SNP [dm6]	A	G	5.691e^-6	0.28	INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	18871721	3R_18871721_SNP [dm3] 3R_23045999_SNP [dm6]	G	A	5.710e^-6	0.28	INTRON CG17121
2R	15105556	2R_15105556_SNP [dm3] 2R_19218051_SNP [dm6]	C	T	5.794e^-6	0.28	INTRON hppy
3L	2465323	3L_2465323_SNP [dm3] 3L_2465323_SNP [dm6]	C	T	5.899e^-6	0.28	SYNONYMOUS_CODING CG45186 DOWNSTREAM CG45186
X	9606267	X_9606267_SNP [dm3] X_9712234_SNP [dm6]	T	C	6.040e^-6	0.28	INTERGENIC
2R	10997432	2R_10997432_SNP [dm3] 2R_15109927_SNP [dm6]	C	T	6.151e^-6	0.28	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15404864	2R_15404864_SNP [dm3] 2R_19517359_SNP [dm6]	A	C	6.524e^-6	0.28	DOWNSTREAM sm INTERGENIC
2R	2424254	2R_2424254_SNP [dm3] 2R_6536749_SNP [dm6]	G	C	6.610e^-6	0.28	INTRON jing
2L	8006567	2L_8006567_SNP [dm3] 2L_8006567_SNP [dm6]	C	T	6.621e^-6	0.28	NON_SYNONYMOUS_CODING Spn28Dc	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
X	7777246	X_7777246_SNP [dm3] X_7883213_SNP [dm6]	C	G	7.221e^-6	0.28	NON_SYNONYMOUS_CODING Ir7f	TF binding site mE1_TFBS_chinmo
X	7647215	X_7647215_SNP [dm3] X_7753182_SNP [dm6]	T	C	7.265e^-6	0.28	INTERGENIC
2R	10986796	2R_10986796_SNP [dm3] 2R_15099291_SNP [dm6]	G	T	7.420e^-6	0.28	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	17799009	2L_17799009_SNP [dm3] 2L_17799009_SNP [dm6]	G	A	8.028e^-6	0.28	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13489957	3L_13489957_SNP [dm3] 3L_13496857_SNP [dm6]	G	C	8.129e^-6	0.28	INTRON Tgi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21914508	3R_21914508_SNP [dm3] 3R_26088786_SNP [dm6]	A	T	8.232e^-6	0.28	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	7379615	2R_7379615_SNP [dm3] 2R_11492110_SNP [dm6]	A	T	8.299e^-6	0.28	INTRON inv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7618329	X_7618329_SNP [dm3] X_7724296_SNP [dm6]	T	A	8.426e^-6	0.28	INTRON Hira
2L	16695275	2L_16695275_SNP [dm3] 2L_16695275_SNP [dm6]	G	A	8.466e^-6	0.28	UPSTREAM grp INTRON grp
2R	16735844	2R_16735844_SNP [dm3] 2R_20848339_SNP [dm6]	A	C	8.679e^-6	0.28	SYNONYMOUS_CODING CG17999	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9320751	3R_9320751_SNP [dm3] 3R_13495029_SNP [dm6]	C	T	8.686e^-6	0.28	INTERGENIC
3R	20574544	3R_20574544_SNP [dm3] 3R_24748822_SNP [dm6]	C	G	8.967e^-6	0.28	UTR_3_PRIME tok UPSTREAM tld	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7379616	2R_7379616_SNP [dm3] 2R_11492111_SNP [dm6]	A	T	9.191e^-6	0.28	INTRON inv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17879809	2R_17879809_SNP [dm3] 2R_21992304_SNP [dm6]	G	T	9.372e^-6	0.28	INTRON CG34370
3L	11924803	3L_11924803_SNP [dm3] 3L_11931703_SNP [dm6]	G	A	9.646e^-6	0.28	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9320744	3R_9320744_SNP [dm3] 3R_13495022_SNP [dm6]	G	C	9.985e^-6	0.28	INTERGENIC
X	8937127	X_8937127_SNP [dm3] X_9043094_SNP [dm6]	T	C	1.015e^-5	0.28	INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	5464367	3R_5464367_SNP [dm3] 3R_9638645_SNP [dm6]	G	C	1.029e^-5	0.28	INTRON Dh44
3L	8894717	3L_8894717_SNP [dm3] 3L_8901617_SNP [dm6]	G	C	1.049e^-5	0.28	NON_SYNONYMOUS_CODING TrpA1 INTRON TrpA1
2L	2912498	2L_2912498_SNP [dm3] 2L_2912498_SNP [dm6]	A	G	1.058e^-5	0.28	INTRON lilli
2R	7670634	2R_7670634_INS [dm3] 2R_11783129_INS [dm6]	T	TCATATT	1.062e^-5	0.28	INTRON ths
3L	10641161	3L_10641161_SNP [dm3] 3L_10648061_SNP [dm6]	C	T	1.099e^-5	0.28	INTRON CG32066
3R	21914470	3R_21914470_SNP [dm3] 3R_26088748_SNP [dm6]	A	T	1.145e^-5	0.28	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	21914476	3R_21914476_SNP [dm3] 3R_26088754_SNP [dm6]	T	C	1.145e^-5	0.28	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	21914481	3R_21914481_SNP [dm3] 3R_26088759_SNP [dm6]	G	T	1.145e^-5	0.28	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	21914484	3R_21914484_SNP [dm3] 3R_26088762_SNP [dm6]	T	A	1.145e^-5	0.28	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	2757981	3L_2757981_SNP [dm3] 3L_2757981_SNP [dm6]	G	A	1.156e^-5	0.28	INTRON Mrtf	TF binding site BDTNP1_TFBS_twi
3R	3041234	3R_3041234_SNP [dm3] 3R_7215512_SNP [dm6]	C	T	1.176e^-5	0.28	SYNONYMOUS_CODING CG14606
3R	9248912	3R_9248912_SNP [dm3] 3R_13423190_SNP [dm6]	C	T	1.188e^-5	0.28	DOWNSTREAM Ir87a INTERGENIC
2L	7227674	2L_7227674_DEL [dm3] 2L_7227674_DEL [dm6]	AGCC	A	1.202e^-5	0.28	UPSTREAM CG43799 INTRON Ndae1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12407305	3L_12407305_SNP [dm3] 3L_12414205_SNP [dm6]	C	T	1.202e^-5	0.28	DOWNSTREAM ArfGAP1 INTRON CG32103	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	5597698	3L_5597698_INS [dm3] 3L_5604598_INS [dm6]	A	AAAAGAA	1.224e^-5	0.28	UPSTREAM mthl2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3L	18380848	3L_18380848_SNP [dm3] 3L_18387748_SNP [dm6]	T	C	1.232e^-5	0.28	INTERGENIC
2L	15742509	2L_15742509_SNP [dm3] 2L_15742509_SNP [dm6]	T	A	1.237e^-5	0.28	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6642887	2L_6642887_SNP [dm3] 2L_6642887_SNP [dm6]	A	T	1.251e^-5	0.28	INTRON CG31635	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12765672	3L_12765672_SNP [dm3] 3L_12772572_SNP [dm6]	C	T	1.252e^-5	0.28	SYNONYMOUS_CODING Hip1 UTR_5_PRIME Hip1
3L	12765698	3L_12765698_SNP [dm3] 3L_12772598_SNP [dm6]	A	T	1.252e^-5	0.28	INTRON Hip1
3L	5498963	3L_5498963_SNP [dm3] 3L_5505863_SNP [dm6]	G	A	1.267e^-5	0.28	INTRON CG34342
3L	13129113	3L_13129113_SNP [dm3] 3L_13136013_SNP [dm6]	G	C	1.273e^-5	0.28	UPSTREAM CG33262 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5726459	3R_5726459_SNP [dm3] 3R_9900737_SNP [dm6]	C	T	1.291e^-5	0.28	INTRON Glut4EF
3L	7024457	3L_7024457_SNP [dm3] 3L_7031357_SNP [dm6]	G	T	1.313e^-5	0.28	INTRON Mp
X	12353312	X_12353312_SNP [dm3] X_12459279_SNP [dm6]	G	T	1.317e^-5	0.28	DOWNSTREAM Rab40 INTERGENIC
3R	21914480	3R_21914480_SNP [dm3] 3R_26088758_SNP [dm6]	A	T	1.320e^-5	0.28	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	11137045	3R_11137045_SNP [dm3] 3R_15311323_SNP [dm6]	T	G	1.349e^-5	0.28	UPSTREAM Tm2 INTRON Tm2	regulatory region REDfly_CRMs
3L	12371920	3L_12371920_SNP [dm3] 3L_12378820_SNP [dm6]	A	T	1.369e^-5	0.28	INTRON Ncc69
X	18633968	X_18633968_SNP [dm3] X_18739935_SNP [dm6]	T	G	1.375e^-5	0.28	UPSTREAM CG6873 INTERGENIC
3R	5726392	3R_5726392_DEL [dm3] 3R_9900670_DEL [dm6]	TAGTT	T	1.391e^-5	0.28	INTRON Glut4EF
2R	5222747	2R_5222747_SNP [dm3] 2R_9335242_SNP [dm6]	T	A	1.405e^-5	0.28	INTRON CG13954 & 1 other	TF binding site mE1_TFBS_HSA
2L	19185807	2L_19185807_SNP [dm3] 2L_19185807_SNP [dm6]	T	C	1.416e^-5	0.28	UPSTREAM pigeon & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	9231536	3R_9231536_SNP [dm3] 3R_13405814_SNP [dm6]	C	T	1.429e^-5	0.28	SYNONYMOUS_CODING yellow-e2 UPSTREAM yellow-e3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9248882	3R_9248882_SNP [dm3] 3R_13423160_SNP [dm6]	G	T	1.429e^-5	0.28	DOWNSTREAM Ir87a INTERGENIC
3R	9258009	3R_9258009_SNP [dm3] 3R_13432287_SNP [dm6]	G	A	1.429e^-5	0.28	SYNONYMOUS_CODING yrt
3L	71116	3L_71116_SNP [dm3] 3L_71116_SNP [dm6]	A	G	1.456e^-5	0.28	SYNONYMOUS_CODING CG43150 UPSTREAM CR44511
2L	4233665	2L_4233665_SNP [dm3] 2L_4233665_SNP [dm6]	T	C	1.460e^-5	0.28	INTERGENIC
X	21435103	X_21435103_SNP [dm3] X_21564076_SNP [dm6]	T	A	1.516e^-5	0.288	INTERGENIC
3L	5591211	3L_5591211_SNP [dm3] 3L_5598111_SNP [dm6]	T	G	1.571e^-5	0.292	DOWNSTREAM CG5150 & 1 other INTERGENIC
X	12283913	X_12283913_INS [dm3] X_12389880_INS [dm6]	C	CCATGTAGCTCC...	1.604e^-5	0.292	INTERGENIC
3R	25631732	3R_25631732_SNP [dm3] 3R_29806010_SNP [dm6]	A	G	1.628e^-5	0.292	SYNONYMOUS_CODING ncd UPSTREAM ca	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	19486162	2L_19486162_SNP [dm3] 2L_19486162_SNP [dm6]	G	T	1.656e^-5	0.292	SYNONYMOUS_CODING CG13084	TF binding site mE1_TFBS_chinmo
3L	1574796	3L_1574796_INS [dm3] 3L_1574796_INS [dm6]	T	TAT	1.661e^-5	0.292	DOWNSTREAM CG12004 INTRON CG12004
3L	2587908	3L_2587908_SNP [dm3] 3L_2587908_SNP [dm6]	A	G	1.669e^-5	0.292	INTRON RpL8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	4578086	X_4578086_SNP [dm3] X_4684053_SNP [dm6]	G	T	1.683e^-5	0.292	INTRON Pp2C1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	216096	3L_216096_SNP [dm3] 3L_216096_SNP [dm6]	A	G	1.695e^-5	0.292	NON_SYNONYMOUS_CODING CG16940 UPSTREAM Kaz1-ORFB & 1 other
3R	9248927	3R_9248927_SNP [dm3] 3R_13423205_SNP [dm6]	A	T	1.698e^-5	0.292	DOWNSTREAM Ir87a INTERGENIC
3L	14079024	3L_14079024_SNP [dm3] 3L_14085924_SNP [dm6]	C	T	1.711e^-5	0.292	UTR_3_PRIME CG8100 DOWNSTREAM CG8100
3L	13129415	3L_13129415_SNP [dm3] 3L_13136315_SNP [dm6]	T	C	1.717e^-5	0.292	NON_SYNONYMOUS_CODING CG33262	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9182316	3R_9182316_SNP [dm3] 3R_13356594_SNP [dm6]	C	T	1.724e^-5	0.292	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15422541	X_15422541_SNP [dm3] X_15528508_SNP [dm6]	C	T	1.783e^-5	0.297	INTRON Ac13E
2R	10221377	2R_10221377_SNP [dm3] 2R_14333872_SNP [dm6]	A	G	1.791e^-5	0.297	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2497650	3L_2497650_SNP [dm3] 3L_2497650_SNP [dm6]	T	C	1.831e^-5	0.298	NON_SYNONYMOUS_CODING CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	10986295	2R_10986295_SNP [dm3] 2R_15098790_SNP [dm6]	T	C	1.852e^-5	0.298	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	3045883	3R_3045883_SNP [dm3] 3R_7220161_SNP [dm6]	A	G	1.873e^-5	0.298	UPSTREAM CG14605 INTERGENIC
X	12354702	X_12354702_SNP [dm3] X_12460669_SNP [dm6]	T	A	1.882e^-5	0.298	INTRON Rab40
X	12354737	X_12354737_SNP [dm3] X_12460704_SNP [dm6]	A	C	1.882e^-5	0.298	INTRON Rab40
2R	10986498	2R_10986498_SNP [dm3] 2R_15098993_SNP [dm6]	G	A	1.887e^-5	0.298	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	14764594	2R_14764594_SNP [dm3] 2R_18877089_SNP [dm6]	G	A	1.938e^-5	0.299	INTERGENIC
2R	12162288	2R_12162288_SNP [dm3] 2R_16274783_SNP [dm6]	G	T	1.947e^-5	0.299	NON_SYNONYMOUS_CODING CG33017
2R	10986636	2R_10986636_SNP [dm3] 2R_15099131_SNP [dm6]	G	T	1.966e^-5	0.299	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	18320058	2R_18320058_SNP [dm3] 2R_22432553_SNP [dm6]	T	C	1.970e^-5	0.299	INTERGENIC
X	12297651	X_12297651_SNP [dm3] X_12403618_SNP [dm6]	G	T	1.990e^-5	0.299	DOWNSTREAM CG32651 INTERGENIC
3L	211702	3L_211702_SNP [dm3] 3L_211702_SNP [dm6]	T	C	2.008e^-5	0.299	NON_SYNONYMOUS_CODING thoc7 UPSTREAM CG7028	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	6780615	3L_6780615_SNP [dm3] 3L_6787515_SNP [dm6]	T	C	2.012e^-5	0.299	UPSTREAM CR45759 INTERGENIC
X	12353328	X_12353328_DEL [dm3] X_12459295_DEL [dm6]	CCATATTATCCA...	C	2.023e^-5	0.299	DOWNSTREAM Rab40 INTERGENIC
X	7644981	X_7644981_SNP [dm3] X_7750948_SNP [dm6]	C	T	2.072e^-5	0.304	INTERGENIC
3L	1119734	3L_1119734_SNP [dm3] 3L_1119734_SNP [dm6]	T	A	2.149e^-5	0.31	INTERGENIC	TF binding site mE1_TFBS_cad
3R	9231485	3R_9231485_SNP [dm3] 3R_13405763_SNP [dm6]	G	T	2.152e^-5	0.31	SYNONYMOUS_CODING yellow-e2 UPSTREAM yellow-e3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	2035004	2R_2035004_SNP [dm3] 2R_6147499_SNP [dm6]	G	A	2.167e^-5	0.31	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5498814	3L_5498814_SNP [dm3] 3L_5505714_SNP [dm6]	G	T	2.329e^-5	0.329	INTRON CG34342
X	6116227	X_6116227_SNP [dm3] X_6222194_SNP [dm6]	G	C	2.354e^-5	0.329	SYNONYMOUS_CODING Efr DOWNSTREAM sqh	TF binding site mE1_TFBS_sens
3L	97234	3L_97234_SNP [dm3] 3L_97234_SNP [dm6]	G	A	2.361e^-5	0.329	DOWNSTREAM CG12483 INTERGENIC
2R	17971127	2R_17971127_SNP [dm3] 2R_22083622_SNP [dm6]	G	A	2.372e^-5	0.329	SYNONYMOUS_CODING Synj
3L	6322808	3L_6322808_SNP [dm3] 3L_6329708_SNP [dm6]	G	A	2.431e^-5	0.33	UTR_3_PRIME CG13300 DOWNSTREAM Or65c
3R	11403952	3R_11403952_SNP [dm3] 3R_15578230_SNP [dm6]	A	C	2.437e^-5	0.33	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	83966	3L_83966_SNP [dm3] 3L_83966_SNP [dm6]	C	T	2.458e^-5	0.33	INTERGENIC
X	7651345	X_7651345_SNP [dm3] X_7757312_SNP [dm6]	C	T	2.501e^-5	0.33	INTERGENIC
3L	14050673	3L_14050673_SNP [dm3] 3L_14057573_SNP [dm6]	A	C	2.534e^-5	0.33	INTRON CG32138	TF binding site BDTNP1_TFBS_twi
3L	13129389	3L_13129389_SNP [dm3] 3L_13136289_SNP [dm6]	T	A	2.534e^-5	0.33	SYNONYMOUS_CODING CG33262	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9226663	3R_9226663_SNP [dm3] 3R_13400941_SNP [dm6]	T	G	2.564e^-5	0.33	INTRON CG9796	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19082581	2R_19082581_SNP [dm3] 2R_23195058_SNP [dm6]	G	A	2.585e^-5	0.33	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16716475	X_16716475_SNP [dm3] X_16822442_SNP [dm6]	A	C	2.595e^-5	0.33	INTRON CG4829
3L	3713170	3L_3713170_SNP [dm3] 3L_3713170_SNP [dm6]	C	T	2.602e^-5	0.33	UPSTREAM CG43089 INTERGENIC
3R	9238335	3R_9238335_SNP [dm3] 3R_13412613_SNP [dm6]	A	T	2.613e^-5	0.33	INTRON yellow-e
2R	8437173	2R_8437173_DEL [dm3] 2R_12549668_DEL [dm6]	AACA	A	2.624e^-5	0.33	INTRON fra
X	7645403	X_7645403_SNP [dm3] X_7751370_SNP [dm6]	C	A	2.629e^-5	0.33	INTERGENIC
X	18835611	X_18835611_INS [dm3] X_18941578_INS [dm6]	A	ACAAAA	2.650e^-5	0.33	INTRON CG43759
2L	4927857	2L_4927857_SNP [dm3] 2L_4927857_SNP [dm6]	G	C	2.658e^-5	0.33	INTRON hoe1
2L	16372923	2L_16372923_SNP [dm3] 2L_16372923_SNP [dm6]	G	T	2.672e^-5	0.33	INTERGENIC
3L	6321349	3L_6321349_SNP [dm3] 3L_6328249_SNP [dm6]	T	C	2.681e^-5	0.33	SYNONYMOUS_CODING Or65c
X	7647207	X_7647207_SNP [dm3] X_7753174_SNP [dm6]	T	A	2.707e^-5	0.331	INTERGENIC
X	12353301	X_12353301_DEL [dm3] X_12459268_DEL [dm6]	TG	C	2.735e^-5	0.333	DOWNSTREAM Rab40 INTERGENIC
3L	108510	3L_108510_SNP [dm3] 3L_108510_SNP [dm6]	G	T	2.793e^-5	0.337	INTERGENIC
2L	8243687	2L_8243687_SNP [dm3] 2L_8243687_SNP [dm6]	G	C	2.864e^-5	0.344	SYNONYMOUS_CODING CG43057 DOWNSTREAM CG8086 & 1 other
3L	168766	3L_168766_SNP [dm3] 3L_168766_SNP [dm6]	A	C	2.906e^-5	0.344	SYNONYMOUS_CODING p130CAS	TF binding site BDTNP1_TFBS_da
X	4579511	X_4579511_SNP [dm3] X_4685478_SNP [dm6]	A	T	2.907e^-5	0.344	NON_SYNONYMOUS_CODING Pp2C1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8982705	2R_8982705_SNP [dm3] 2R_13095200_SNP [dm6]	C	G	2.980e^-5	0.344	INTERGENIC	TF binding site mE1_TFBS_inv
2L	17249024	2L_17249024_SNP [dm3] 2L_17249024_SNP [dm6]	T	C	2.983e^-5	0.344	INTRON beat-IIIc
2R	10990129	2R_10990129_SNP [dm3] 2R_15102624_SNP [dm6]	G	T	3.005e^-5	0.344	INTERGENIC
2R	10485748	2R_10485748_SNP [dm3] 2R_14598243_SNP [dm6]	G	A	3.006e^-5	0.344	SYNONYMOUS_CODING RpI1
3L	5260503	3L_5260503_INS [dm3] 3L_5267403_INS [dm6]	A	ATAACTATATTATCATTTTA...	3.062e^-5	0.344	INTRON shep
3R	19615017	3R_19615017_SNP [dm3] 3R_23789295_SNP [dm6]	C	T	3.073e^-5	0.344	INTRON mbc
3R	4243094	3R_4243094_SNP [dm3] 3R_8417372_SNP [dm6]	T	C	3.076e^-5	0.344	INTRON CG45263
2L	19185834	2L_19185834_SNP [dm3] 2L_19185834_SNP [dm6]	A	G	3.097e^-5	0.344	UPSTREAM pigeon & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	3037245	3R_3037245_SNP [dm3] 3R_7211523_SNP [dm6]	A	T	3.135e^-5	0.344	INTERGENIC
3L	5787431	3L_5787431_SNP [dm3] 3L_5794331_SNP [dm6]	A	T	3.140e^-5	0.344	UPSTREAM Bre1 DOWNSTREAM Tektin-C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	52977	3L_52977_DEL [dm3] 3L_52977_DEL [dm6]	AAAAGTTAATTAAAAT...	A	3.152e^-5	0.344	DOWNSTREAM CG43149 INTERGENIC
3R	11137055	3R_11137055_SNP [dm3] 3R_15311333_SNP [dm6]	T	A	3.165e^-5	0.344	UPSTREAM Tm2 INTRON Tm2	regulatory region REDfly_CRMs
X	7645099	X_7645099_SNP [dm3] X_7751066_SNP [dm6]	C	T	3.168e^-5	0.344	INTERGENIC
3L	4638842	3L_4638842_SNP [dm3] 3L_4638842_SNP [dm6]	T	G	3.190e^-5	0.344	INTRON axo
2L	18179815	2L_18179815_SNP [dm3] 2L_18179815_SNP [dm6]	C	G	3.200e^-5	0.344	INTRON CG42750
3R	3044865	3R_3044865_SNP [dm3] 3R_7219143_SNP [dm6]	T	A	3.201e^-5	0.344	INTRON CG14605
3L	5498806	3L_5498806_SNP [dm3] 3L_5505706_SNP [dm6]	G	T	3.217e^-5	0.344	INTRON CG34342
2R	15105859	2R_15105859_SNP [dm3] 2R_19218354_SNP [dm6]	C	A	3.234e^-5	0.344	INTRON hppy
X	12624413	X_12624413_SNP [dm3] X_12730380_SNP [dm6]	T	C	3.256e^-5	0.344	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl
X	7777215	X_7777215_SNP [dm3] X_7883182_SNP [dm6]	C	T	3.281e^-5	0.345	SYNONYMOUS_CODING Ir7f
3R	21914525	3R_21914525_SNP [dm3] 3R_26088803_SNP [dm6]	G	A	3.340e^-5	0.349	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	11925153	3L_11925153_SNP [dm3] 3L_11932053_SNP [dm6]	C	T	3.353e^-5	0.349	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14096547	2L_14096547_SNP [dm3] 2L_14096547_SNP [dm6]	C	T	3.454e^-5	0.357	INTERGENIC
3R	21914617	3R_21914617_DEL [dm3] 3R_26088895_DEL [dm6]	TTAATCCCAAATCC...	T	3.511e^-5	0.361	INTRON dys	regulatory region REDfly_CRMs
3L	586537	3L_586537_SNP [dm3] 3L_586537_SNP [dm6]	A	G	3.634e^-5	0.369	INTRON Kah
3L	586538	3L_586538_SNP [dm3] 3L_586538_SNP [dm6]	A	T	3.634e^-5	0.369	INTRON Kah
X	7650318	X_7650318_SNP [dm3] X_7756285_SNP [dm6]	G	A	3.647e^-5	0.369	INTERGENIC
2R	8151275	2R_8151275_SNP [dm3] 2R_12263770_SNP [dm6]	A	G	3.664e^-5	0.369	UPSTREAM Cam INTRON Cam
2L	18065848	2L_18065848_SNP [dm3] 2L_18065848_SNP [dm6]	T	A	3.690e^-5	0.369	INTRON rdo	TF binding site mE1_TFBS_inv
2R	5224146	2R_5224146_SNP [dm3] 2R_9336641_SNP [dm6]	C	G	3.752e^-5	0.373	INTRON CG13954 & 1 other
3L	13162854	3L_13162854_SNP [dm3] 3L_13169754_SNP [dm6]	C	T	3.910e^-5	0.378	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	21914406	3R_21914406_SNP [dm3] 3R_26088684_SNP [dm6]	C	T	3.915e^-5	0.378	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	6585669	X_6585669_DEL [dm3] X_6691636_DEL [dm6]	ACA	A	3.928e^-5	0.378	DOWNSTREAM CG14442 INTRON CG14442	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16340521	2L_16340521_SNP [dm3] 2L_16340521_SNP [dm6]	A	G	3.935e^-5	0.378	NON_SYNONYMOUS_CODING CG44405 UPSTREAM CG42266	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7637566	2R_7637566_SNP [dm3] 2R_11750061_SNP [dm6]	A	G	3.943e^-5	0.378	INTERGENIC
X	2708165	X_2708165_SNP [dm3] X_2814132_SNP [dm6]	C	T	3.953e^-5	0.378	INTRON kirre
3L	6320361	3L_6320361_SNP [dm3] 3L_6327261_SNP [dm6]	G	T	3.966e^-5	0.378	UPSTREAM Or65c DOWNSTREAM Or65b INTERGENIC
2R	13812001	2R_13812001_SNP [dm3] 2R_17924496_SNP [dm6]	G	A	3.974e^-5	0.378	SYNONYMOUS_CODING Elk
2L	12163383	2L_12163383_SNP [dm3] 2L_12163383_SNP [dm6]	A	T	3.982e^-5	0.378	UPSTREAM ZnT33D DOWNSTREAM CG31861 INTRON CG31760
3R	22427036	3R_22427036_SNP [dm3] 3R_26601314_SNP [dm6]	A	G	4.018e^-5	0.379	NON_SYNONYMOUS_CODING scrib INTRON scrib
2L	5936687	2L_5936687_SNP [dm3] 2L_5936687_SNP [dm6]	A	C	4.081e^-5	0.38	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7246511	2R_7246511_SNP [dm3] 2R_11359006_SNP [dm6]	G	T	4.105e^-5	0.38	UTR_5_PRIME CG12384 DOWNSTREAM ix	TF binding site BDTNP1_TFBS_dl
3R	9190310	3R_9190310_INS [dm3] 3R_13364588_INS [dm6]	A	AA	4.152e^-5	0.38	UPSTREAM Dic1 & 1 other INTRON poly	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	1554423	3R_1554423_SNP [dm3] 3R_5728701_SNP [dm6]	C	T	4.186e^-5	0.38	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi transposable element FlyBase
3L	22944452	3L_22944452_SNP [dm3] 3L_22951352_SNP [dm6]	C	T	4.204e^-5	0.38	SYNONYMOUS_CODING Mes2
3R	9250303	3R_9250303_SNP [dm3] 3R_13424581_SNP [dm6]	C	T	4.207e^-5	0.38	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7173139	3L_7173139_SNP [dm3] 3L_7180039_SNP [dm6]	A	C	4.233e^-5	0.38	INTRON Dscam2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	12353266	X_12353266_SNP [dm3] X_12459233_SNP [dm6]	G	A	4.235e^-5	0.38	DOWNSTREAM Rab40 INTERGENIC
X	12353268	X_12353268_SNP [dm3] X_12459235_SNP [dm6]	T	C	4.235e^-5	0.38	DOWNSTREAM Rab40 INTERGENIC
X	12353418	X_12353418_SNP [dm3] X_12459385_SNP [dm6]	A	T	4.237e^-5	0.38	DOWNSTREAM Rab40 INTERGENIC
3L	6613394	3L_6613394_SNP [dm3] 3L_6620294_SNP [dm6]	T	C	4.243e^-5	0.38	INTERGENIC
2L	8941608	2L_8941608_SNP [dm3] 2L_8941608_SNP [dm6]	C	A	4.306e^-5	0.383	SYNONYMOUS_CODING CG9510 DOWNSTREAM CG9515	TF binding site mE1_TFBS_cad
3L	3811911	3L_3811911_SNP [dm3] 3L_3811911_SNP [dm6]	T	A	4.363e^-5	0.387	UPSTREAM CG32263 INTRON CG12006	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8474442	3L_8474442_SNP [dm3] 3L_8481342_SNP [dm6]	G	A	4.428e^-5	0.389	INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14090259	2L_14090259_SNP [dm3] 2L_14090259_SNP [dm6]	C	T	4.473e^-5	0.389	UTR_3_PRIME nAChRalpha5 DOWNSTREAM nAChRalpha5
3L	3492531	3L_3492531_SNP [dm3] 3L_3492531_SNP [dm6]	G	A	4.495e^-5	0.389	INTRON CG42324
3R	21914512	3R_21914512_DEL [dm3] 3R_26088790_DEL [dm6]	AC	A	4.523e^-5	0.389	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	21914516	3R_21914516_SNP [dm3] 3R_26088794_SNP [dm6]	A	T	4.523e^-5	0.389	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	9201928	3R_9201928_SNP [dm3] 3R_13376206_SNP [dm6]	G	C	4.533e^-5	0.389	UPSTREAM CR44138 INTRON CG9813	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12353424	X_12353424_SNP [dm3] X_12459391_SNP [dm6]	G	A	4.540e^-5	0.389	DOWNSTREAM Rab40 INTERGENIC
3L	9397246	3L_9397246_SNP [dm3] 3L_9404146_SNP [dm6]	A	T	4.571e^-5	0.39	UPSTREAM Cpr67B INTERGENIC
2L	19185885	2L_19185885_SNP [dm3] 2L_19185885_SNP [dm6]	T	C	4.589e^-5	0.39	UPSTREAM pigeon & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8847379	3L_8847379_SNP [dm3] 3L_8854279_SNP [dm6]	G	A	4.664e^-5	0.394	INTRON dally
2L	13915055	2L_13915055_SNP [dm3] 2L_13915055_SNP [dm6]	G	A	4.683e^-5	0.394	SYNONYMOUS_CODING Ance-3
3L	5924384	3L_5924384_SNP [dm3] 3L_5931284_SNP [dm6]	C	T	4.774e^-5	0.394	SYNONYMOUS_CODING Rcc1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2L	18065994	2L_18065994_SNP [dm3] 2L_18065994_SNP [dm6]	G	C	4.809e^-5	0.394	INTRON rdo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	3205092	3R_3205092_SNP [dm3] 3R_7379370_SNP [dm6]	A	C	4.816e^-5	0.394	INTERGENIC
3R	3205159	3R_3205159_SNP [dm3] 3R_7379437_SNP [dm6]	A	G	4.816e^-5	0.394	INTERGENIC
3L	6618307	3L_6618307_SNP [dm3] 3L_6625207_SNP [dm6]	T	A	4.838e^-5	0.394	INTRON GluRIA
3L	2757975	3L_2757975_SNP [dm3] 3L_2757975_SNP [dm6]	A	C	4.849e^-5	0.394	INTRON Mrtf	TF binding site BDTNP1_TFBS_twi
2R	11168305	2R_11168305_SNP [dm3] 2R_15280800_SNP [dm6]	G	A	4.857e^-5	0.394	INTRON Trpm
2L	12163418	2L_12163418_SNP [dm3] 2L_12163418_SNP [dm6]	C	T	4.870e^-5	0.394	UPSTREAM ZnT33D DOWNSTREAM CG31861 INTRON CG31760
3L	59686	3L_59686_INS [dm3] 3L_59686_INS [dm6]	A	AA	4.897e^-5	0.394	INTERGENIC
X	12353497	X_12353497_INS [dm3] X_12459464_INS [dm6]	G	GT	4.916e^-5	0.394	DOWNSTREAM Rab40 INTERGENIC
X	12353505	X_12353505_SNP [dm3] X_12459472_SNP [dm6]	C	G	4.916e^-5	0.394	DOWNSTREAM Rab40 INTERGENIC
2R	8151335	2R_8151335_SNP [dm3] 2R_12263830_SNP [dm6]	A	T	4.973e^-5	0.396	UPSTREAM Cam INTRON Cam
3L	5260477	3L_5260477_SNP [dm3] 3L_5267377_SNP [dm6]	A	T	4.983e^-5	0.396	INTRON shep
2R	2423830	2R_2423830_SNP [dm3] 2R_6536325_SNP [dm6]	C	T	5.029e^-5	0.397	INTRON jing
2L	14096168	2L_14096168_SNP [dm3] 2L_14096168_SNP [dm6]	G	A	5.032e^-5	0.397	INTERGENIC
2R	16568125	2R_16568125_SNP [dm3] 2R_20680620_SNP [dm6]	G	A	5.052e^-5	0.397	INTERGENIC
X	7652602	X_7652602_SNP [dm3] X_7758569_SNP [dm6]	A	C	5.104e^-5	0.399	INTERGENIC
2R	13811989	2R_13811989_SNP [dm3] 2R_17924484_SNP [dm6]	G	T	5.208e^-5	0.404	SYNONYMOUS_CODING Elk
2R	3728568	2R_3728568_SNP [dm3] 2R_7841063_SNP [dm6]	G	T	5.239e^-5	0.404	INTRON Dgk
2R	8160539	2R_8160539_SNP [dm3] 2R_12273034_SNP [dm6]	T	A	5.275e^-5	0.404	INTRON Cam
2L	9183809	2L_9183809_SNP [dm3] 2L_9183809_SNP [dm6]	C	G	5.287e^-5	0.404	INTRON tai	TF binding site mE1_TFBS_HSA
3L	18238276	3L_18238276_SNP [dm3] 3L_18245176_SNP [dm6]	G	T	5.302e^-5	0.404	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3713186	3L_3713186_SNP [dm3] 3L_3713186_SNP [dm6]	T	G	5.324e^-5	0.404	UPSTREAM CG43089 INTERGENIC
3L	3713191	3L_3713191_SNP [dm3] 3L_3713191_SNP [dm6]	G	A	5.324e^-5	0.404	UPSTREAM CG43089 INTERGENIC
3R	13150582	3R_13150582_SNP [dm3] 3R_17324860_SNP [dm6]	C	T	5.340e^-5	0.404	INTRON beat-IIa
3L	3777108	3L_3777108_SNP [dm3] 3L_3777108_SNP [dm6]	G	A	5.389e^-5	0.406	INTRON CG32264
3L	18398543	3L_18398543_SNP [dm3] 3L_18405443_SNP [dm6]	T	C	5.406e^-5	0.406	INTERGENIC	regulatory region REDfly_CRMs
3R	20643535	3R_20643535_SNP [dm3] 3R_24817813_SNP [dm6]	G	A	5.434e^-5	0.406	UPSTREAM CG5808 INTRON Saf-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	7651314	X_7651314_SNP [dm3] X_7757281_SNP [dm6]	G	A	5.526e^-5	0.41	INTERGENIC
2R	16067870	2R_16067870_SNP [dm3] 2R_20180365_SNP [dm6]	A	G	5.528e^-5	0.41	INTERGENIC
2L	12844631	2L_12844631_SNP [dm3] 2L_12844631_SNP [dm6]	C	T	5.597e^-5	0.412	INTERGENIC
3R	3044851	3R_3044851_SNP [dm3] 3R_7219129_SNP [dm6]	G	A	5.619e^-5	0.412	SPLICE_SITE_REGION CG14605 INTRON CG14605
X	6116161	X_6116161_SNP [dm3] X_6222128_SNP [dm6]	G	A	5.623e^-5	0.412	SYNONYMOUS_CODING Efr DOWNSTREAM sqh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	104392	3L_104392_SNP [dm3] 3L_104392_SNP [dm6]	C	T	5.730e^-5	0.413	INTERGENIC
3L	106319	3L_106319_SNP [dm3] 3L_106319_SNP [dm6]	C	G	5.730e^-5	0.413	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	16340523	2L_16340523_SNP [dm3] 2L_16340523_SNP [dm6]	C	T	5.740e^-5	0.413	NON_SYNONYMOUS_CODING CG44405 UPSTREAM CG42266	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21914519	3R_21914519_SNP [dm3] 3R_26088797_SNP [dm6]	G	T	5.810e^-5	0.413	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	4374342	X_4374342_SNP [dm3] X_4480309_SNP [dm6]	T	A	5.827e^-5	0.413	INTRON CR32773 & 1 other
X	12354748	X_12354748_SNP [dm3] X_12460715_SNP [dm6]	A	G	5.834e^-5	0.413	INTRON Rab40
X	12354754	X_12354754_SNP [dm3] X_12460721_SNP [dm6]	G	A	5.834e^-5	0.413	INTRON Rab40
X	12354758	X_12354758_SNP [dm3] X_12460725_SNP [dm6]	C	T	5.834e^-5	0.413	INTRON Rab40
X	12354761	X_12354761_SNP [dm3] X_12460728_SNP [dm6]	C	T	5.834e^-5	0.413	INTRON Rab40
3L	6613395	3L_6613395_SNP [dm3] 3L_6620295_SNP [dm6]	T	C	5.874e^-5	0.414	INTERGENIC
3R	11908994	3R_11908994_SNP [dm3] 3R_16083272_SNP [dm6]	T	C	5.918e^-5	0.415	UPSTREAM sxe2 & 1 other INTRON Mhcl
2L	17082924	2L_17082924_SNP [dm3] 2L_17082924_SNP [dm6]	T	C	5.945e^-5	0.416	INTERGENIC
2R	10993226	2R_10993226_SNP [dm3] 2R_15105721_SNP [dm6]	T	C	5.995e^-5	0.418	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9404566	3R_9404566_SNP [dm3] 3R_13578844_SNP [dm6]	T	A	6.036e^-5	0.418	INTERGENIC
X	12355006	X_12355006_SNP [dm3] X_12460973_SNP [dm6]	A	G	6.048e^-5	0.418	INTRON Rab40
2L	17795564	2L_17795564_SNP [dm3] 2L_17795564_SNP [dm6]	C	T	6.082e^-5	0.419	INTRON CadN2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13269652	2L_13269652_SNP [dm3] 2L_13269652_SNP [dm6]	T	G	6.108e^-5	0.419	INTRON CG44085
X	12353460	X_12353460_SNP [dm3] X_12459427_SNP [dm6]	A	G	6.173e^-5	0.421	DOWNSTREAM Rab40 INTERGENIC
2L	7093573	2L_7093573_SNP [dm3] 2L_7093573_SNP [dm6]	T	C	6.176e^-5	0.421	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	3617238	3L_3617238_SNP [dm3] 3L_3617238_SNP [dm6]	C	G	6.285e^-5	0.423	DOWNSTREAM CG10357 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	24160221	3L_24160221_SNP [dm3] 3L_24167121_SNP [dm6]	C	G	6.297e^-5	0.423	INTRON Snap25
2L	4151171	2L_4151171_SNP [dm3] 2L_4151171_SNP [dm6]	A	T	6.311e^-5	0.423	UTR_3_PRIME CG2955
X	12352849	X_12352849_SNP [dm3] X_12458816_SNP [dm6]	A	G	6.320e^-5	0.423	DOWNSTREAM Rab40 INTERGENIC
3L	5908131	3L_5908131_SNP [dm3] 3L_5915031_SNP [dm6]	G	A	6.320e^-5	0.423	INTRON CG13288
2R	15105545	2R_15105545_SNP [dm3] 2R_19218040_SNP [dm6]	G	A	6.374e^-5	0.425	INTRON hppy
3R	3077268	3R_3077268_SNP [dm3] 3R_7251546_SNP [dm6]	A	G	6.439e^-5	0.425	UTR_5_PRIME Obp84a UTR_3_PRIME CG10050 DOWNSTREAM Gld INTRON Obp84a
2L	19144094	2L_19144094_SNP [dm3] 2L_19144094_SNP [dm6]	G	T	6.468e^-5	0.425	INTRON brat
X	20957149	X_20957149_SNP [dm3] X_21086122_SNP [dm6]	T	C	6.520e^-5	0.425	INTERGENIC
X	8896438	X_8896438_SNP [dm3] X_9002405_SNP [dm6]	A	G	6.520e^-5	0.425	INTRON rdgA & 1 other
X	18908530	X_18908530_SNP [dm3] X_19014497_SNP [dm6]	C	T	6.545e^-5	0.425	INTRON CG43759
3R	9226521	3R_9226521_SNP [dm3] 3R_13400799_SNP [dm6]	C	A	6.596e^-5	0.425	INTRON CG9796	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	9249508	3R_9249508_SNP [dm3] 3R_13423786_SNP [dm6]	C	T	6.599e^-5	0.425	DOWNSTREAM Ir87a INTERGENIC
3L	5787469	3L_5787469_SNP [dm3] 3L_5794369_SNP [dm6]	G	T	6.604e^-5	0.425	UPSTREAM Bre1 DOWNSTREAM Tektin-C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	4789974	2L_4789974_DEL [dm3] 2L_4789974_DEL [dm6]	TCAGATCCAACACATTTCGG...	T	6.620e^-5	0.425	INTRON CG15630
2L	3195338	2L_3195338_SNP [dm3] 2L_3195338_SNP [dm6]	G	T	6.646e^-5	0.425	INTRON CG34393
2L	11373044	2L_11373044_SNP [dm3] 2L_11373044_SNP [dm6]	G	C	6.686e^-5	0.425	SYNONYMOUS_CODING salr
3L	14245925	3L_14245925_SNP [dm3] 3L_14252825_SNP [dm6]	T	C	6.694e^-5	0.425	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	23934850	3L_23934850_SNP [dm3] 3L_23941750_SNP [dm6]	A	C	6.697e^-5	0.425	INTRON CG40470
3L	5339507	3L_5339507_SNP [dm3] 3L_5346407_SNP [dm6]	T	A	6.711e^-5	0.425	UTR_5_PRIME lama
3L	3737355	3L_3737355_SNP [dm3] 3L_3737355_SNP [dm6]	T	A	6.763e^-5	0.425	INTRON CG32264
3R	9178413	3R_9178413_SNP [dm3] 3R_13352691_SNP [dm6]	T	G	6.799e^-5	0.425	UPSTREAM mthl12 INTERGENIC
2L	12965376	2L_12965376_SNP [dm3] 2L_12965376_SNP [dm6]	A	T	6.816e^-5	0.425	INTERGENIC
2R	6560290	2R_6560290_SNP [dm3] 2R_10672785_SNP [dm6]	G	A	6.821e^-5	0.425	UPSTREAM stan INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9237950	3R_9237950_SNP [dm3] 3R_13412228_SNP [dm6]	G	A	6.851e^-5	0.425	INTRON yellow-e
2L	15797072	2L_15797072_SNP [dm3] 2L_15797072_SNP [dm6]	G	A	6.908e^-5	0.425	INTERGENIC
3R	20642318	3R_20642318_SNP [dm3] 3R_24816596_SNP [dm6]	C	T	6.916e^-5	0.425	SYNONYMOUS_CODING CG5808 UPSTREAM Saf-B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Ubx
2L	8233989	2L_8233989_SNP [dm3] 2L_8233989_SNP [dm6]	C	A	6.923e^-5	0.425	INTRON Pvr
2R	15067261	2R_15067261_SNP [dm3] 2R_19179756_SNP [dm6]	C	T	6.962e^-5	0.425	SYNONYMOUS_CODING hppy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	4420884	X_4420884_DEL [dm3] X_4526851_DEL [dm6]	GTCCTTAG	G	6.998e^-5	0.425	INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13941048	2L_13941048_SNP [dm3] 2L_13941048_SNP [dm6]	G	T	7.008e^-5	0.425	INTRON Ance-3
3R	9166581	3R_9166581_SNP [dm3] 3R_13340859_SNP [dm6]	C	T	7.088e^-5	0.425	SYNONYMOUS_CODING PK2-R1
3L	1375791	3L_1375791_SNP [dm3] 3L_1375791_SNP [dm6]	C	T	7.122e^-5	0.425	INTRON Ptp61F & 1 other
X	12354941	X_12354941_SNP [dm3] X_12460908_SNP [dm6]	C	G	7.150e^-5	0.425	INTRON Rab40
3R	15024919	3R_15024919_SNP [dm3] 3R_19199197_SNP [dm6]	C	T	7.201e^-5	0.425	INTRON CG31475
3R	22964609	3R_22964609_SNP [dm3] 3R_27138887_SNP [dm6]	G	A	7.238e^-5	0.425	INTRON CG6051
3L	1814842	3L_1814842_SNP [dm3] 3L_1814842_SNP [dm6]	A	T	7.288e^-5	0.425	INTRON GV1
3L	12209820	3L_12209820_SNP [dm3] 3L_12216720_SNP [dm6]	A	G	7.297e^-5	0.425	INTRON app
2L	13804469	2L_13804469_SNP [dm3] 2L_13804469_SNP [dm6]	A	G	7.323e^-5	0.425	INTRON CAH1
3R	9175020	3R_9175020_SNP [dm3] 3R_13349298_SNP [dm6]	C	T	7.334e^-5	0.425	INTERGENIC
2R	15105558	2R_15105558_SNP [dm3] 2R_19218053_SNP [dm6]	C	T	7.341e^-5	0.425	INTRON hppy
X	11894187	X_11894187_SNP [dm3] X_12000154_SNP [dm6]	T	C	7.407e^-5	0.425	INTRON fw
3L	1547886	3L_1547886_SNP [dm3] 3L_1547886_SNP [dm6]	A	T	7.409e^-5	0.425	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8149736	2R_8149736_SNP [dm3] 2R_12262231_SNP [dm6]	T	C	7.438e^-5	0.425	INTRON Cam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_Trl
3L	22927812	3L_22927812_SNP [dm3] 3L_22934712_SNP [dm6]	C	A	7.476e^-5	0.425	INTERGENIC	TF binding site mE1_TFBS_sens
2L	11307716	2L_11307716_DEL [dm3] 2L_11307716_DEL [dm6]	AAA	A	7.494e^-5	0.425	UPSTREAM CR43721 INTERGENIC
X	6605704	X_6605704_DEL [dm3] X_6711671_DEL [dm6]	GGCAAAG	G	7.526e^-5	0.425	INTRON CG14441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7053074	3L_7053074_SNP [dm3] 3L_7059974_SNP [dm6]	A	T	7.532e^-5	0.425	UTR_3_PRIME CG8641
X	22117007	X_22117007_SNP [dm3] X_22715171_SNP [dm6]	C	T	7.541e^-5	0.425	INTRON CR44997
X	7652372	X_7652372_SNP [dm3] X_7758339_SNP [dm6]	A	C	7.557e^-5	0.425	INTERGENIC
2L	13916238	2L_13916238_SNP [dm3] 2L_13916238_SNP [dm6]	C	G	7.561e^-5	0.425	INTRON Ance-3	TF binding site BDTNP1_TFBS_twi
3L	8881996	3L_8881996_SNP [dm3] 3L_8888896_SNP [dm6]	T	A	7.658e^-5	0.425	UPSTREAM CG43169 INTRON dally
3L	8881997	3L_8881997_SNP [dm3] 3L_8888897_SNP [dm6]	T	C	7.658e^-5	0.425	UPSTREAM CG43169 INTRON dally
3L	8882291	3L_8882291_SNP [dm3] 3L_8889191_SNP [dm6]	A	C	7.658e^-5	0.425	NON_SYNONYMOUS_CODING dally UPSTREAM CG43169
3L	8884240	3L_8884240_SNP [dm3] 3L_8891140_SNP [dm6]	G	A	7.658e^-5	0.425	UTR_3_PRIME dally UPSTREAM Mcm7 DOWNSTREAM dally	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1
3L	8884473	3L_8884473_SNP [dm3] 3L_8891373_SNP [dm6]	C	T	7.658e^-5	0.425	UPSTREAM Mcm7 DOWNSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3L	8884648	3L_8884648_SNP [dm3] 3L_8891548_SNP [dm6]	A	T	7.658e^-5	0.425	UPSTREAM Mcm7 DOWNSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8884651	3L_8884651_SNP [dm3] 3L_8891551_SNP [dm6]	T	C	7.658e^-5	0.425	UPSTREAM Mcm7 DOWNSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8884670	3L_8884670_SNP [dm3] 3L_8891570_SNP [dm6]	C	T	7.658e^-5	0.425	UPSTREAM Mcm7 DOWNSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8885372	3L_8885372_SNP [dm3] 3L_8892272_SNP [dm6]	G	T	7.658e^-5	0.425	INTRON Mcm7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8885385	3L_8885385_SNP [dm3] 3L_8892285_SNP [dm6]	C	T	7.658e^-5	0.425	SPLICE_SITE_REGION Mcm7 SYNONYMOUS_CODING Mcm7	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	12353530	X_12353530_SNP [dm3] X_12459497_SNP [dm6]	C	T	7.674e^-5	0.425	DOWNSTREAM Rab40 INTERGENIC
3R	1554417	3R_1554417_SNP [dm3] 3R_5728695_SNP [dm6]	G	T	7.723e^-5	0.425	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi transposable element FlyBase
3R	13150606	3R_13150606_SNP [dm3] 3R_17324884_SNP [dm6]	G	A	7.729e^-5	0.425	INTRON beat-IIa
X	12588122	X_12588122_SNP [dm3] X_12694089_SNP [dm6]	G	T	7.757e^-5	0.425	INTRON Smr	TF binding site mE1_TFBS_inv
3R	9617854	3R_9617854_SNP [dm3] 3R_13792132_SNP [dm6]	G	T	7.781e^-5	0.425	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	94999	3L_94999_SNP [dm3] 3L_94999_SNP [dm6]	A	T	7.791e^-5	0.425	INTERGENIC
3L	13236988	3L_13236988_SNP [dm3] 3L_13243888_SNP [dm6]	T	C	7.793e^-5	0.425	INTRON caps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8884634	3L_8884634_SNP [dm3] 3L_8891534_SNP [dm6]	A	G	7.827e^-5	0.426	UPSTREAM Mcm7 DOWNSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	4927743	2L_4927743_SNP [dm3] 2L_4927743_SNP [dm6]	A	G	7.867e^-5	0.426	INTRON hoe1
2L	12605980	2L_12605980_SNP [dm3] 2L_12605980_SNP [dm6]	C	T	7.910e^-5	0.426	INTRON nub
3L	11152351	3L_11152351_SNP [dm3] 3L_11159251_SNP [dm6]	G	A	7.910e^-5	0.426	INTRON CG32082
2L	19815296	2L_19815296_SNP [dm3] 2L_19815296_SNP [dm6]	T	A	7.942e^-5	0.426	UPSTREAM CG13962 DOWNSTREAM snRNA:U2:38ABa INTRON sick	TF binding site mE1_TFBS_inv
2L	5962153	2L_5962153_SNP [dm3] 2L_5962153_SNP [dm6]	T	C	7.949e^-5	0.426	DOWNSTREAM psd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4595804	3L_4595804_SNP [dm3] 3L_4595804_SNP [dm6]	T	A	7.982e^-5	0.426	SYNONYMOUS_CODING Src64B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12353397	X_12353397_SNP [dm3] X_12459364_SNP [dm6]	A	T	7.995e^-5	0.426	DOWNSTREAM Rab40 INTERGENIC
3L	14079019	3L_14079019_SNP [dm3] 3L_14085919_SNP [dm6]	A	T	8.144e^-5	0.432	UTR_3_PRIME CG8100 DOWNSTREAM CG8100
3L	73988	3L_73988_SNP [dm3] 3L_73988_SNP [dm6]	A	T	8.155e^-5	0.432	UTR_3_PRIME CG13405 UPSTREAM CR43988 DOWNSTREAM CG13405	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22998385	3L_22998385_SNP [dm3] 3L_23005285_SNP [dm6]	T	A	8.257e^-5	0.436	INTRON nrm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6831765	X_6831765_SNP [dm3] X_6937732_SNP [dm6]	T	C	8.264e^-5	0.436	INTRON CG14431
3L	5924534	3L_5924534_SNP [dm3] 3L_5931434_SNP [dm6]	G	T	8.350e^-5	0.437	SYNONYMOUS_CODING Rcc1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2R	7259356	2R_7259356_SNP [dm3] 2R_11371851_SNP [dm6]	T	C	8.396e^-5	0.437	UPSTREAM Tapdelta INTERGENIC
2R	10030553	2R_10030553_SNP [dm3] 2R_14143048_SNP [dm6]	C	G	8.425e^-5	0.437	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	9258762	3R_9258762_SNP [dm3] 3R_13433040_SNP [dm6]	C	T	8.426e^-5	0.437	INTRON yrt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	11137126	3R_11137126_SNP [dm3] 3R_15311404_SNP [dm6]	T	C	8.463e^-5	0.437	UPSTREAM Tm2 INTRON Tm2	regulatory region REDfly_CRMs
X	19293492	X_19293492_DEL [dm3] X_19399459_DEL [dm6]	TT	T	8.554e^-5	0.437	INTRON kek5
X	20864704	X_20864704_SNP [dm3] X_20993677_SNP [dm6]	C	A	8.578e^-5	0.437	INTERGENIC
3R	23418478	3R_23418478_SNP [dm3] 3R_27592756_SNP [dm6]	T	G	8.585e^-5	0.437	INTRON CG5639
3L	14079015	3L_14079015_SNP [dm3] 3L_14085915_SNP [dm6]	C	T	8.612e^-5	0.437	UTR_3_PRIME CG8100 DOWNSTREAM CG8100
3L	12538768	3L_12538768_SNP [dm3] 3L_12545668_SNP [dm6]	T	A	8.614e^-5	0.437	INTRON sowah
2R	17792354	2R_17792354_SNP [dm3] 2R_21904849_SNP [dm6]	C	T	8.648e^-5	0.437	INTRON Fili
3L	12310957	3L_12310957_SNP [dm3] 3L_12317857_SNP [dm6]	C	T	8.666e^-5	0.437	INTERGENIC
3R	9184106	3R_9184106_SNP [dm3] 3R_13358384_SNP [dm6]	T	A	8.669e^-5	0.437	INTERGENIC
3L	10179802	3L_10179802_DEL [dm3] 3L_10186702_DEL [dm6]	CCCAA	C	8.715e^-5	0.437	UPSTREAM dpr10 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	6758887	3L_6758887_SNP [dm3] 3L_6765787_SNP [dm6]	C	T	8.729e^-5	0.437	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
X	12353347	X_12353347_SNP [dm3] X_12459314_SNP [dm6]	T	C	8.730e^-5	0.437	DOWNSTREAM Rab40 INTERGENIC
X	16755830	X_16755830_SNP [dm3] X_16861797_SNP [dm6]	T	G	8.743e^-5	0.437	INTRON CG13003
3L	22944544	3L_22944544_SNP [dm3] 3L_22951444_SNP [dm6]	A	T	8.770e^-5	0.437	UTR_3_PRIME Mes2
X	4578082	X_4578082_SNP [dm3] X_4684049_SNP [dm6]	G	A	8.804e^-5	0.437	INTRON Pp2C1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	7328992	X_7328992_SNP [dm3] X_7434959_SNP [dm6]	A	T	8.815e^-5	0.437	INTERGENIC
3L	2465182	3L_2465182_SNP [dm3] 3L_2465182_SNP [dm6]	T	C	8.820e^-5	0.437	SYNONYMOUS_CODING CG45186 DOWNSTREAM CG45186
3R	10110346	3R_10110346_SNP [dm3] 3R_14284624_SNP [dm6]	T	G	8.852e^-5	0.437	INTRON trx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	3624233	3L_3624233_SNP [dm3] 3L_3624233_SNP [dm6]	G	C	8.876e^-5	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	21928409	3R_21928409_SNP [dm3] 3R_26102687_SNP [dm6]	C	T	8.879e^-5	0.437	INTERGENIC
3L	6316610	3L_6316610_DEL [dm3] 3L_6323510_DEL [dm6]	GATGATAATGATGATG...	G	8.883e^-5	0.437	INTERGENIC
X	12352862	X_12352862_SNP [dm3] X_12458829_SNP [dm6]	G	A	8.924e^-5	0.438	DOWNSTREAM Rab40 INTERGENIC
3L	1171292	3L_1171292_SNP [dm3] 3L_1171292_SNP [dm6]	C	T	8.938e^-5	0.438	INTRON bab2	regulatory region REDfly_CRMs
3R	3056289	3R_3056289_SNP [dm3] 3R_7230567_SNP [dm6]	C	G	8.979e^-5	0.438	INTRON CG14608
3L	3622377	3L_3622377_SNP [dm3] 3L_3622377_SNP [dm6]	A	T	8.993e^-5	0.438	INTERGENIC
2R	20532503	2R_20532503_SNP [dm3] 2R_24644980_SNP [dm6]	C	A	9.062e^-5	0.439	INTERGENIC
3R	5102327	3R_5102327_SNP [dm3] 3R_9276605_SNP [dm6]	C	G	9.083e^-5	0.439	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11909976	3R_11909976_SNP [dm3] 3R_16084254_SNP [dm6]	T	G	9.091e^-5	0.439	INTRON Mhcl & 1 other
2L	8233992	2L_8233992_SNP [dm3] 2L_8233992_SNP [dm6]	T	C	9.144e^-5	0.441	INTRON Pvr
3L	3618502	3L_3618502_SNP [dm3] 3L_3618502_SNP [dm6]	C	T	9.189e^-5	0.441	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18223790	X_18223790_SNP [dm3] X_18329757_SNP [dm6]	T	C	9.191e^-5	0.441	INTRON CG6123
2L	7956330	2L_7956330_SNP [dm3] 2L_7956330_SNP [dm6]	C	T	9.319e^-5	0.441	INTRON Snoo	TF binding site mE1_TFBS_inv
2L	2418130	2L_2418130_SNP [dm3] 2L_2418130_SNP [dm6]	C	T	9.334e^-5	0.441	UPSTREAM CG34448 DOWNSTREAM CG34447 INTERGENIC
3R	9376969	3R_9376969_SNP [dm3] 3R_13551247_SNP [dm6]	C	A	9.334e^-5	0.441	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	18066019	2L_18066019_SNP [dm3] 2L_18066019_SNP [dm6]	G	A	9.353e^-5	0.441	INTRON rdo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	7647209	X_7647209_SNP [dm3] X_7753176_SNP [dm6]	G	A	9.372e^-5	0.441	INTERGENIC
3L	3811924	3L_3811924_SNP [dm3] 3L_3811924_SNP [dm6]	C	A	9.400e^-5	0.441	UPSTREAM CG32263 INTRON CG12006	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9259505	3R_9259505_SNP [dm3] 3R_13433783_SNP [dm6]	C	T	9.443e^-5	0.441	INTRON yrt	TF binding site BDTNP1_TFBS_dl
2L	15797125	2L_15797125_SNP [dm3] 2L_15797125_SNP [dm6]	A	T	9.476e^-5	0.441	INTERGENIC
2R	16735771	2R_16735771_SNP [dm3] 2R_20848266_SNP [dm6]	G	C	9.486e^-5	0.441	NON_SYNONYMOUS_CODING CG17999	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2739003	3L_2739003_SNP [dm3] 3L_2739003_SNP [dm6]	G	C	9.501e^-5	0.441	UPSTREAM Acp62F INTRON Mrtf
3L	2587932	3L_2587932_SNP [dm3] 3L_2587932_SNP [dm6]	T	G	9.502e^-5	0.441	INTRON RpL8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	24422086	3R_24422086_SNP [dm3] 3R_28596364_SNP [dm6]	T	A	9.515e^-5	0.441	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	5330028	X_5330028_SNP [dm3] X_5435995_SNP [dm6]	T	G	9.519e^-5	0.441	DOWNSTREAM CR44471 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	19353738	X_19353738_SNP [dm3] X_19459705_SNP [dm6]	C	T	9.520e^-5	0.441	INTRON kek5
X	14037617	X_14037617_SNP [dm3] X_14143584_SNP [dm6]	C	T	9.546e^-5	0.441	INTERGENIC
3L	11458658	3L_11458658_SNP [dm3] 3L_11465558_SNP [dm6]	T	G	9.594e^-5	0.441	UPSTREAM CG6140 INTRON CG6140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	9993334	3L_9993334_SNP [dm3] 3L_10000234_SNP [dm6]	C	A	9.618e^-5	0.441	INTRON dpr6
3L	6859874	3L_6859874_SNP [dm3] 3L_6866774_SNP [dm6]	A	T	9.624e^-5	0.441	UPSTREAM CR45115 INTERGENIC
X	12354637	X_12354637_SNP [dm3] X_12460604_SNP [dm6]	G	T	9.672e^-5	0.442	INTRON Rab40
2L	20508237	2L_20508237_SNP [dm3] 2L_20508237_SNP [dm6]	G	A	9.725e^-5	0.443	INTERGENIC
2L	13567489	2L_13567489_SNP [dm3] 2L_13567489_SNP [dm6]	T	A	9.766e^-5	0.444	INTRON kuz
X	14854871	X_14854871_SNP [dm3] X_14960838_SNP [dm6]	A	G	9.819e^-5	0.446	INTRON eag	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	8154750	2R_8154750_SNP [dm3] 2R_12267245_SNP [dm6]	A	G	9.925e^-5	0.449	INTRON Cam
3L	554986	3L_554986_SNP [dm3] 3L_554986_SNP [dm6]	G	A	9.955e^-5	0.449	INTRON hipk
2L	16724477	2L_16724477_SNP [dm3] 2L_16724477_SNP [dm6]	A	G	9.972e^-5	0.449	SYNONYMOUS_CODING VhaSFD DOWNSTREAM mir-1006	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20640996	3R_20640996_SNP [dm3] 3R_24815274_SNP [dm6]	G	T	1.003e^-4	0.449	DOWNSTREAM CG34150 INTRON CG5808	TF binding site mE1_TFBS_cad
3R	2986145	3R_2986145_SNP [dm3] 3R_7160423_SNP [dm6]	G	T	1.013e^-4	0.449	INTERGENIC
3R	14855218	3R_14855218_SNP [dm3] 3R_19029496_SNP [dm6]	G	C	1.017e^-4	0.449	NON_SYNONYMOUS_CODING P5cr UPSTREAM gatA DOWNSTREAM Prp18	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8160578	2R_8160578_SNP [dm3] 2R_12273073_SNP [dm6]	T	G	1.018e^-4	0.449	INTRON Cam
X	20897158	X_20897158_SNP [dm3] X_21026131_SNP [dm6]	G	A	1.018e^-4	0.449	UTR_3_PRIME CG1532 UPSTREAM r-cup DOWNSTREAM CG1532
2R	18421087	2R_18421087_SNP [dm3] 2R_22533582_SNP [dm6]	C	T	1.020e^-4	0.449	INTRON px	TF binding site mE1_TFBS_cad
3R	20644169	3R_20644169_SNP [dm3] 3R_24818447_SNP [dm6]	G	A	1.021e^-4	0.449	INTRON Saf-B
3L	176566	3L_176566_SNP [dm3] 3L_176566_SNP [dm6]	C	A	1.021e^-4	0.449	UTR_3_PRIME Vdup1 UPSTREAM CG7049	TF binding site mE1_TFBS_cad
3L	3830949	3L_3830949_SNP [dm3] 3L_3830949_SNP [dm6]	A	T	1.021e^-4	0.449	INTRON enc
X	20897368	X_20897368_INS [dm3] X_21026341_INS [dm6]	A	AG	1.023e^-4	0.449	UTR_3_PRIME CG1532 UPSTREAM r-cup
3R	1599143	3R_1599143_SNP [dm3] 3R_5773421_SNP [dm6]	G	A	1.024e^-4	0.449	INTRON CG2082
3L	8024298	3L_8024298_SNP [dm3] 3L_8031198_SNP [dm6]	A	G	1.030e^-4	0.45	INTRON nmo
3R	9240615	3R_9240615_SNP [dm3] 3R_13414893_SNP [dm6]	A	G	1.030e^-4	0.45	INTRON yellow-e
X	6542553	X_6542553_SNP [dm3] X_6648520_SNP [dm6]	A	G	1.035e^-4	0.45	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_chinmo
X	12353504	X_12353504_SNP [dm3] X_12459471_SNP [dm6]	C	A	1.035e^-4	0.45	DOWNSTREAM Rab40 INTERGENIC
2R	6313826	2R_6313826_SNP [dm3] 2R_10426321_SNP [dm6]	C	G	1.047e^-4	0.454	DOWNSTREAM Prx2540-1 & 1 other INTERGENIC	transposable element FlyBase
3L	20359432	3L_20359432_SNP [dm3] 3L_20366332_SNP [dm6]	T	C	1.050e^-4	0.454	UTR_5_PRIME Toll-9 UPSTREAM Toll-9 & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	7613485	X_7613485_SNP [dm3] X_7719452_SNP [dm6]	G	A	1.053e^-4	0.454	INTERGENIC
3L	11421577	3L_11421577_SNP [dm3] 3L_11428477_SNP [dm6]	A	C	1.054e^-4	0.454	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	5102319	3R_5102319_SNP [dm3] 3R_9276597_SNP [dm6]	C	A	1.058e^-4	0.454	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19293362	X_19293362_INS [dm3] X_19399329_INS [dm6]	A	AA	1.061e^-4	0.454	INTRON kek5
3R	9260039	3R_9260039_SNP [dm3] 3R_13434317_SNP [dm6]	A	T	1.064e^-4	0.454	UTR_5_PRIME yrt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	23976735	3R_23976735_SNP [dm3] 3R_28151013_SNP [dm6]	T	G	1.070e^-4	0.454	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11371187	2L_11371187_SNP [dm3] 2L_11371187_SNP [dm6]	T	C	1.070e^-4	0.454	INTRON salr
3R	1740921	3R_1740921_SNP [dm3] 3R_5915199_SNP [dm6]	T	A	1.072e^-4	0.454	INTRON CG34113
2L	5499989	2L_5499989_SNP [dm3] 2L_5499989_SNP [dm6]	G	T	1.072e^-4	0.454	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7151877	2R_7151877_SNP [dm3] 2R_11264372_SNP [dm6]	C	A	1.085e^-4	0.459	UPSTREAM Cpr47Ee INTERGENIC
X	13171685	X_13171685_DEL [dm3] X_13277652_DEL [dm6]	TAAAT	T	1.091e^-4	0.459	INTRON HDAC4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	1434787	3L_1434787_SNP [dm3] 3L_1434787_SNP [dm6]	G	A	1.094e^-4	0.459	NON_SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad
3L	5597744	3L_5597744_SNP [dm3] 3L_5604644_SNP [dm6]	T	A	1.100e^-4	0.459	UPSTREAM mthl2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9169619	3R_9169619_SNP [dm3] 3R_13343897_SNP [dm6]	G	C	1.102e^-4	0.459	INTRON PK2-R1
3R	9169623	3R_9169623_DEL [dm3] 3R_13343901_DEL [dm6]	ACAAATGC	CTT	1.102e^-4	0.459	INTRON PK2-R1
3L	13359430	3L_13359430_SNP [dm3] 3L_13366330_SNP [dm6]	C	G	1.104e^-4	0.459	INTERGENIC
2R	8135452	2R_8135452_DEL [dm3] 2R_12247947_DEL [dm6]	GGGTCAACGAACTGACGCTG...	G	1.109e^-4	0.459	UPSTREAM CR44315 INTERGENIC
X	18174129	X_18174129_SNP [dm3] X_18280096_SNP [dm6]	G	A	1.114e^-4	0.459	SYNONYMOUS_CODING upd3
X	7617541	X_7617541_SNP [dm3] X_7723508_SNP [dm6]	C	A	1.114e^-4	0.459	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	9321218	3R_9321218_SNP [dm3] 3R_13495496_SNP [dm6]	A	C	1.116e^-4	0.459	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6268203	X_6268203_SNP [dm3] X_6374170_SNP [dm6]	C	G	1.119e^-4	0.459	INTERGENIC
3L	11925025	3L_11925025_SNP [dm3] 3L_11931925_SNP [dm6]	A	G	1.119e^-4	0.459	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8135709	2R_8135709_SNP [dm3] 2R_12248204_SNP [dm6]	A	C	1.124e^-4	0.459	INTERGENIC
2R	8832318	2R_8832318_SNP [dm3] 2R_12944813_SNP [dm6]	G	C	1.124e^-4	0.459	UPSTREAM Mdr49 INTRON Mdr49	TF binding site mE1_TFBS_HSA
3R	3078187	3R_3078187_SNP [dm3] 3R_7252465_SNP [dm6]	C	T	1.126e^-4	0.459	UTR_3_PRIME Gld UPSTREAM Obp84a DOWNSTREAM CG10050
X	17696973	X_17696973_SNP [dm3] X_17802940_SNP [dm6]	G	C	1.129e^-4	0.459	INTRON OdsH	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
X	7651889	X_7651889_SNP [dm3] X_7757856_SNP [dm6]	T	C	1.129e^-4	0.459	INTERGENIC
2L	15437639	2L_15437639_SNP [dm3] 2L_15437639_SNP [dm6]	T	A	1.131e^-4	0.459	INTERGENIC
2L	7228600	2L_7228600_DEL [dm3] 2L_7228600_DEL [dm6]	TGAGGATAT	T	1.132e^-4	0.459	UTR_3_PRIME CG43799 INTRON Ndae1	TF binding site BDTNP1_TFBS_da
2R	12095829	2R_12095829_INS [dm3] 2R_16208324_INS [dm6]	T	TGGCTAGCT	1.140e^-4	0.461	UPSTREAM tRNA:CR30237 INTRON mrj	TF binding site BDTNP1_TFBS_dl
3L	4638762	3L_4638762_SNP [dm3] 3L_4638762_SNP [dm6]	T	C	1.141e^-4	0.461	INTRON axo
2L	12472295	2L_12472295_DEL [dm3] 2L_12472295_DEL [dm6]	CC	C	1.149e^-4	0.461	INTRON bun	TF binding site BDTNP1_TFBS_gt mE1_TFBS_cad
2R	2439569	2R_2439569_SNP [dm3] 2R_6552064_SNP [dm6]	A	G	1.150e^-4	0.461	INTRON jing	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5908013	3L_5908013_SNP [dm3] 3L_5914913_SNP [dm6]	T	G	1.152e^-4	0.461	INTRON CG13288
3L	19514345	3L_19514345_SNP [dm3] 3L_19521245_SNP [dm6]	T	G	1.156e^-4	0.461	UTR_5_PRIME Cpr76Bc UPSTREAM Cpr76Bc DOWNSTREAM Cpr76Bb
3R	9169655	3R_9169655_SNP [dm3] 3R_13343933_SNP [dm6]	G	A	1.157e^-4	0.461	INTRON PK2-R1
2L	11399250	2L_11399250_SNP [dm3] 2L_11399250_SNP [dm6]	A	G	1.159e^-4	0.461	INTERGENIC	regulatory region REDfly_CRMs
3L	12876824	3L_12876824_SNP [dm3] 3L_12883724_SNP [dm6]	A	T	1.160e^-4	0.461	INTERGENIC
2R	20508446	2R_20508446_SNP [dm3] 2R_24620923_SNP [dm6]	G	A	1.166e^-4	0.462	NON_SYNONYMOUS_CODING CG13594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11877684	2R_11877684_SNP [dm3] 2R_15990179_SNP [dm6]	G	A	1.167e^-4	0.462	SYNONYMOUS_CODING CG8314 UPSTREAM Strn-Mlck	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5597627	3L_5597627_SNP [dm3] 3L_5604527_SNP [dm6]	A	T	1.177e^-4	0.463	UPSTREAM mthl2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3L	5339508	3L_5339508_SNP [dm3] 3L_5346408_SNP [dm6]	A	C	1.185e^-4	0.463	UTR_5_PRIME lama
X	7650609	X_7650609_INS [dm3] X_7756576_INS [dm6]	G	AA	1.188e^-4	0.463	INTERGENIC
X	7650624	X_7650624_SNP [dm3] X_7756591_SNP [dm6]	C	A	1.188e^-4	0.463	INTERGENIC
2L	13592130	2L_13592130_SNP [dm3] 2L_13592130_SNP [dm6]	A	C	1.189e^-4	0.463	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	9183651	2L_9183651_SNP [dm3] 2L_9183651_SNP [dm6]	T	A	1.195e^-4	0.463	INTRON tai	TF binding site mE1_TFBS_HSA
3L	601166	3L_601166_SNP [dm3] 3L_601166_SNP [dm6]	T	G	1.196e^-4	0.463	INTRON CG13893
2L	11365334	2L_11365334_DEL [dm3] 2L_11365334_DEL [dm6]	TAGTCAAGTTCGT...	T	1.201e^-4	0.463	UTR_5_PRIME salr INTRON salr	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	5265754	2L_5265754_SNP [dm3] 2L_5265754_SNP [dm6]	A	G	1.229e^-4	0.463	SYNONYMOUS_CODING Cyp4ac1 UPSTREAM Cyp4ac2 INTRON tkv	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	8156289	2R_8156289_SNP [dm3] 2R_12268784_SNP [dm6]	G	T	1.231e^-4	0.463	INTRON Cam
X	7651273	X_7651273_SNP [dm3] X_7757240_SNP [dm6]	T	C	1.231e^-4	0.463	INTERGENIC
3R	1741466	3R_1741466_SNP [dm3] 3R_5915744_SNP [dm6]	A	G	1.231e^-4	0.463	INTRON CG34113
3R	1783249	3R_1783249_SNP [dm3] 3R_5957527_SNP [dm6]	T	C	1.236e^-4	0.463	INTRON CG34113
X	17341866	X_17341866_SNP [dm3] X_17447833_SNP [dm6]	G	A	1.237e^-4	0.463	INTRON p-cup	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	12096384	X_12096384_DEL [dm3] X_12202351_DEL [dm6]	ATTT	GAA	1.238e^-4	0.463	INTRON Ten-a	enhancer mE1_CBP_Enhancers
X	12096394	X_12096394_SNP [dm3] X_12202361_SNP [dm6]	C	A	1.238e^-4	0.463	INTRON Ten-a	enhancer mE1_CBP_Enhancers
X	12096403	X_12096403_SNP [dm3] X_12202370_SNP [dm6]	A	G	1.238e^-4	0.463	INTRON Ten-a	enhancer mE1_CBP_Enhancers
X	12096405	X_12096405_SNP [dm3] X_12202372_SNP [dm6]	T	A	1.238e^-4	0.463	INTRON Ten-a	enhancer mE1_CBP_Enhancers
2R	6324695	2R_6324695_SNP [dm3] 2R_10437190_SNP [dm6]	G	C	1.240e^-4	0.463	NON_SYNONYMOUS_CODING CG12895 UPSTREAM Galphao DOWNSTREAM RanBPM	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	5260475	3L_5260475_SNP [dm3] 3L_5267375_SNP [dm6]	A	T	1.244e^-4	0.463	INTRON shep
X	7650332	X_7650332_SNP [dm3] X_7756299_SNP [dm6]	T	C	1.248e^-4	0.463	INTERGENIC
3L	3737956	3L_3737956_SNP [dm3] 3L_3737956_SNP [dm6]	A	C	1.252e^-4	0.463	INTRON CG32264
X	7646138	X_7646138_SNP [dm3] X_7752105_SNP [dm6]	T	C	1.256e^-4	0.463	INTERGENIC
X	7651825	X_7651825_SNP [dm3] X_7757792_SNP [dm6]	T	C	1.259e^-4	0.463	INTERGENIC
3R	3032649	3R_3032649_DEL [dm3] 3R_7206927_DEL [dm6]	CGCTTGGAACGCGATAATGC...	G	1.261e^-4	0.463	DOWNSTREAM CG1288 INTERGENIC
3R	3032875	3R_3032875_SNP [dm3] 3R_7207153_SNP [dm6]	C	T	1.261e^-4	0.463	DOWNSTREAM CG1288 INTERGENIC
3R	3039481	3R_3039481_SNP [dm3] 3R_7213759_SNP [dm6]	G	A	1.261e^-4	0.463	DOWNSTREAM CG14606 INTERGENIC
3R	3048100	3R_3048100_SNP [dm3] 3R_7222378_SNP [dm6]	A	T	1.261e^-4	0.463	INTERGENIC
3R	3053337	3R_3053337_SNP [dm3] 3R_7227615_SNP [dm6]	A	T	1.261e^-4	0.463	INTRON CG14608
3R	3055462	3R_3055462_SNP [dm3] 3R_7229740_SNP [dm6]	T	A	1.261e^-4	0.463	INTRON CG14608
3R	3057143	3R_3057143_SNP [dm3] 3R_7231421_SNP [dm6]	G	C	1.261e^-4	0.463	INTRON CG14608
3R	3057215	3R_3057215_SNP [dm3] 3R_7231493_SNP [dm6]	C	T	1.261e^-4	0.463	INTRON CG14608
X	12506679	X_12506679_SNP [dm3] X_12612646_SNP [dm6]	A	T	1.263e^-4	0.463	SYNONYMOUS_CODING CG2543 UPSTREAM CG1463 DOWNSTREAM CR45621 EXON CR45621	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	9169667	3R_9169667_SNP [dm3] 3R_13343945_SNP [dm6]	C	T	1.267e^-4	0.463	INTRON PK2-R1
2R	8309316	2R_8309316_SNP [dm3] 2R_12421811_SNP [dm6]	A	C	1.272e^-4	0.463	INTRON CG8834	TF binding site mE1_TFBS_cad
X	19071623	X_19071623_SNP [dm3] X_19177590_SNP [dm6]	C	T	1.273e^-4	0.463	NON_SYNONYMOUS_CODING CG7556
X	8926183	X_8926183_SNP [dm3] X_9032150_SNP [dm6]	T	C	1.276e^-4	0.463	INTRON CR43836 & 1 other
2R	2426708	2R_2426708_SNP [dm3] 2R_6539203_SNP [dm6]	G	T	1.283e^-4	0.463	INTRON jing
3L	3867751	3L_3867751_SNP [dm3] 3L_3867751_SNP [dm6]	A	T	1.290e^-4	0.463	INTERGENIC
2L	4245918	2L_4245918_INS [dm3] 2L_4245918_INS [dm6]	A	AAACA	1.293e^-4	0.463	DOWNSTREAM CR44059 INTERGENIC
X	15355090	X_15355090_SNP [dm3] X_15461057_SNP [dm6]	A	T	1.306e^-4	0.463	INTRON shtd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	8151331	2R_8151331_SNP [dm3] 2R_12263826_SNP [dm6]	A	G	1.312e^-4	0.463	UPSTREAM Cam INTRON Cam
3L	23004500	3L_23004500_SNP [dm3] 3L_23011400_SNP [dm6]	T	A	1.314e^-4	0.463	INTRON nrm
2L	18094717	2L_18094717_SNP [dm3] 2L_18094717_SNP [dm6]	C	T	1.315e^-4	0.463	INTERGENIC
3R	20575044	3R_20575044_SNP [dm3] 3R_24749322_SNP [dm6]	A	T	1.321e^-4	0.463	UPSTREAM tld DOWNSTREAM tok INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	16517351	X_16517351_INS [dm3] X_16623318_INS [dm6]	C	CCATCCATTCAATC...	1.322e^-4	0.463	DOWNSTREAM Rok INTERGENIC
2R	1396696	2R_1396696_SNP [dm3] 2R_5509191_SNP [dm6]	G	C	1.326e^-4	0.463	INTRON CG30438
3L	5786046	3L_5786046_SNP [dm3] 3L_5792946_SNP [dm6]	A	G	1.331e^-4	0.463	SYNONYMOUS_CODING Bre1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5464320	3R_5464320_SNP [dm3] 3R_9638598_SNP [dm6]	A	G	1.332e^-4	0.463	UPSTREAM Scm INTRON Dh44
3R	3044004	3R_3044004_SNP [dm3] 3R_7218282_SNP [dm6]	A	G	1.332e^-4	0.463	STOP_LOST CG14605 SYNONYMOUS_CODING CG14605
3R	3114647	3R_3114647_SNP [dm3] 3R_7288925_SNP [dm6]	C	A	1.332e^-4	0.463	INTRON rn
3L	11421433	3L_11421433_SNP [dm3] 3L_11428333_SNP [dm6]	G	C	1.332e^-4	0.463	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	20323788	2R_20323788_SNP [dm3] 2R_24436265_SNP [dm6]	A	G	1.333e^-4	0.463	INTERGENIC
3R	9261693	3R_9261693_SNP [dm3] 3R_13435971_SNP [dm6]	G	A	1.337e^-4	0.463	UPSTREAM yrt INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_sens
2L	11524486	2L_11524486_SNP [dm3] 2L_11524486_SNP [dm6]	G	A	1.343e^-4	0.463	SYNONYMOUS_CODING CG31705	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	7228409	2L_7228409_SNP [dm3] 2L_7228409_SNP [dm6]	C	T	1.356e^-4	0.463	NON_SYNONYMOUS_CODING CG43799 INTRON Ndae1
3L	10644637	3L_10644637_SNP [dm3] 3L_10651537_SNP [dm6]	T	C	1.367e^-4	0.463	INTRON CG32066
3L	10644638	3L_10644638_DEL [dm3] 3L_10651538_DEL [dm6]	CG	C	1.367e^-4	0.463	INTRON CG32066
3L	8971872	3L_8971872_SNP [dm3] 3L_8978772_SNP [dm6]	G	T	1.373e^-4	0.463	INTRON CG5644	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	11137110	3R_11137110_SNP [dm3] 3R_15311388_SNP [dm6]	C	T	1.378e^-4	0.463	UPSTREAM Tm2 INTRON Tm2	regulatory region REDfly_CRMs
X	7650323	X_7650323_SNP [dm3] X_7756290_SNP [dm6]	T	A	1.380e^-4	0.463	INTERGENIC
X	7650328	X_7650328_SNP [dm3] X_7756295_SNP [dm6]	G	C	1.380e^-4	0.463	INTERGENIC
3L	14220096	3L_14220096_SNP [dm3] 3L_14226996_SNP [dm6]	A	T	1.382e^-4	0.463	INTRON nuf
X	7613628	X_7613628_SNP [dm3] X_7719595_SNP [dm6]	G	A	1.384e^-4	0.463	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5962255	2L_5962255_SNP [dm3] 2L_5962255_SNP [dm6]	G	A	1.389e^-4	0.463	DOWNSTREAM psd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6108856	2L_6108856_SNP [dm3] 2L_6108856_SNP [dm6]	C	T	1.392e^-4	0.463	UPSTREAM stai INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3L	2641281	3L_2641281_SNP [dm3] 3L_2641281_SNP [dm6]	T	G	1.395e^-4	0.463	UTR_3_PRIME CG42245 & 1 other DOWNSTREAM CG14949
X	12096491	X_12096491_SNP [dm3] X_12202458_SNP [dm6]	C	T	1.397e^-4	0.463	INTRON Ten-a	enhancer mE1_CBP_Enhancers
X	7651342	X_7651342_SNP [dm3] X_7757309_SNP [dm6]	T	C	1.397e^-4	0.463	INTERGENIC
3R	25833908	3R_25833908_SNP [dm3] 3R_30008186_SNP [dm6]	G	C	1.399e^-4	0.463	NON_SYNONYMOUS_CODING CG7912 INTRON Nlp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13288258	2L_13288258_SNP [dm3] 2L_13288258_SNP [dm6]	A	T	1.402e^-4	0.463	DOWNSTREAM CR44972 INTRON Uvrag
3L	13129413	3L_13129413_SNP [dm3] 3L_13136313_SNP [dm6]	G	T	1.403e^-4	0.463	NON_SYNONYMOUS_CODING CG33262	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9271889	3L_9271889_SNP [dm3] 3L_9278789_SNP [dm6]	C	T	1.405e^-4	0.463	INTRON GluRIB
2L	1464744	2L_1464744_INS [dm3] 2L_1464744_INS [dm6]	A	AG	1.407e^-4	0.463	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3L	3543153	3L_3543153_SNP [dm3] 3L_3543153_SNP [dm6]	C	T	1.407e^-4	0.463	UPSTREAM Eip63E INTRON Eip63E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	1504711	3L_1504711_SNP [dm3] 3L_1504711_SNP [dm6]	A	G	1.407e^-4	0.463	SYNONYMOUS_CODING cue INTRON Psa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11364537	2L_11364537_DEL [dm3] 2L_11364537_DEL [dm6]	TATTCCAATTTTCCCCGGGC...	T	1.409e^-4	0.463	UPSTREAM salr INTRON salr	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	16197454	X_16197454_DEL [dm3] X_16303421_DEL [dm6]	CT	C	1.409e^-4	0.463	UPSTREAM CG3679 DOWNSTREAM CG3632 INTERGENIC
3R	9986452	3R_9986452_INS [dm3] 3R_14160730_INS [dm6]	G	GA	1.409e^-4	0.463	UPSTREAM CG31327 INTERGENIC
3R	9986455	3R_9986455_SNP [dm3] 3R_14160733_SNP [dm6]	T	C	1.409e^-4	0.463	UPSTREAM CG31327 INTERGENIC
3L	1544798	3L_1544798_SNP [dm3] 3L_1544798_SNP [dm6]	C	T	1.416e^-4	0.463	UTR_3_PRIME CG7852 DOWNSTREAM CG32313
3R	9250757	3R_9250757_INS [dm3] 3R_13425035_INS [dm6]	A	AA	1.418e^-4	0.463	UPSTREAM Act87E DOWNSTREAM CR45591 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	2659632	3L_2659632_SNP [dm3] 3L_2659632_SNP [dm6]	G	T	1.419e^-4	0.463	UPSTREAM CG33233 INTRON Fife
2R	11169270	2R_11169270_SNP [dm3] 2R_15281765_SNP [dm6]	C	T	1.422e^-4	0.463	INTRON Trpm	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18257511	3L_18257511_SNP [dm3] 3L_18264411_SNP [dm6]	T	C	1.422e^-4	0.463	INTERGENIC
X	7651831	X_7651831_SNP [dm3] X_7757798_SNP [dm6]	G	T	1.429e^-4	0.463	INTERGENIC
3L	13359405	3L_13359405_SNP [dm3] 3L_13366305_SNP [dm6]	A	G	1.430e^-4	0.463	INTERGENIC
X	2708150	X_2708150_DEL [dm3] X_2814117_DEL [dm6]	TCATGGTATGG...	T	1.432e^-4	0.463	INTRON kirre
X	2708167	X_2708167_INS [dm3] X_2814134_INS [dm6]	A	AC	1.432e^-4	0.463	INTRON kirre
X	2708179	X_2708179_SNP [dm3] X_2814146_SNP [dm6]	A	C	1.432e^-4	0.463	INTRON kirre
3R	9179434	3R_9179434_SNP [dm3] 3R_13353712_SNP [dm6]	G	T	1.437e^-4	0.463	NON_SYNONYMOUS_CODING mthl12
2R	15105538	2R_15105538_SNP [dm3] 2R_19218033_SNP [dm6]	C	T	1.440e^-4	0.463	INTRON hppy
2R	7259228	2R_7259228_SNP [dm3] 2R_11371723_SNP [dm6]	T	G	1.440e^-4	0.463	UPSTREAM Tapdelta INTERGENIC
2R	8157620	2R_8157620_SNP [dm3] 2R_12270115_SNP [dm6]	C	T	1.442e^-4	0.463	INTRON Cam
2L	7228631	2L_7228631_SNP [dm3] 2L_7228631_SNP [dm6]	A	T	1.442e^-4	0.463	UTR_3_PRIME CG43799 INTRON Ndae1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10642470	3L_10642470_SNP [dm3] 3L_10649370_SNP [dm6]	C	T	1.445e^-4	0.463	INTRON CG32066
3L	10642498	3L_10642498_SNP [dm3] 3L_10649398_SNP [dm6]	G	A	1.445e^-4	0.463	INTRON CG32066
X	7619193	X_7619193_SNP [dm3] X_7725160_SNP [dm6]	C	T	1.446e^-4	0.463	SYNONYMOUS_CODING Hira DOWNSTREAM NELF-B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9238545	3R_9238545_SNP [dm3] 3R_13412823_SNP [dm6]	A	G	1.447e^-4	0.463	INTRON yellow-e
X	7614760	X_7614760_SNP [dm3] X_7720727_SNP [dm6]	G	T	1.449e^-4	0.463	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	16262689	3L_16262689_SNP [dm3] 3L_16269589_SNP [dm6]	G	T	1.451e^-4	0.463	NON_SYNONYMOUS_CODING CG13068 DOWNSTREAM CG34248
3L	12876827	3L_12876827_SNP [dm3] 3L_12883727_SNP [dm6]	T	A	1.452e^-4	0.463	INTERGENIC
X	12353382	X_12353382_SNP [dm3] X_12459349_SNP [dm6]	A	T	1.455e^-4	0.463	DOWNSTREAM Rab40 INTERGENIC
X	12353384	X_12353384_SNP [dm3] X_12459351_SNP [dm6]	C	G	1.455e^-4	0.463	DOWNSTREAM Rab40 INTERGENIC
2L	12356518	2L_12356518_SNP [dm3] 2L_12356518_SNP [dm6]	G	C	1.456e^-4	0.463	UTR_5_PRIME CG17010 INTRON bru-2
2L	12356519	2L_12356519_SNP [dm3] 2L_12356519_SNP [dm6]	C	T	1.456e^-4	0.463	UTR_5_PRIME CG17010 INTRON bru-2
3L	10381023	3L_10381023_SNP [dm3] 3L_10387923_SNP [dm6]	G	A	1.460e^-4	0.463	DOWNSTREAM CR45245 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	18147702	2L_18147702_SNP [dm3] 2L_18147702_SNP [dm6]	T	C	1.460e^-4	0.463	INTRON Socs36E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7777767	X_7777767_SNP [dm3] X_7883734_SNP [dm6]	C	T	1.461e^-4	0.463	NON_SYNONYMOUS_CODING Ir7f UPSTREAM Ir7g
2R	3744950	2R_3744950_SNP [dm3] 2R_7857445_SNP [dm6]	A	G	1.467e^-4	0.463	INTRON Dgk	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	10112951	3R_10112951_SNP [dm3] 3R_14287229_SNP [dm6]	T	C	1.475e^-4	0.463	UPSTREAM trx & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	13770940	2R_13770940_SNP [dm3] 2R_17883435_SNP [dm6]	G	A	1.481e^-4	0.463	INTRON Elk
2L	7416462	2L_7416462_SNP [dm3] 2L_7416462_SNP [dm6]	A	G	1.490e^-4	0.463	INTRON chm
3L	5787432	3L_5787432_SNP [dm3] 3L_5794332_SNP [dm6]	G	A	1.491e^-4	0.463	UPSTREAM Bre1 DOWNSTREAM Tektin-C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	5787438	3L_5787438_SNP [dm3] 3L_5794338_SNP [dm6]	G	T	1.491e^-4	0.463	UPSTREAM Bre1 DOWNSTREAM Tektin-C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	1828364	3L_1828364_SNP [dm3] 3L_1828364_SNP [dm6]	A	G	1.492e^-4	0.463	INTRON Cpr62Ba
2R	17484602	2R_17484602_SNP [dm3] 2R_21597097_SNP [dm6]	T	A	1.493e^-4	0.463	INTERGENIC
3L	12620726	3L_12620726_SNP [dm3] 3L_12627626_SNP [dm6]	C	T	1.499e^-4	0.463	UPSTREAM CR32111 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	3106187	3R_3106187_SNP [dm3] 3R_7280465_SNP [dm6]	C	T	1.499e^-4	0.463	INTRON rn
3L	12878397	3L_12878397_SNP [dm3] 3L_12885297_SNP [dm6]	T	C	1.502e^-4	0.463	SYNONYMOUS_CODING CG14120	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14220060	3L_14220060_SNP [dm3] 3L_14226960_SNP [dm6]	C	A	1.509e^-4	0.463	INTRON nuf
3R	11404330	3R_11404330_SNP [dm3] 3R_15578608_SNP [dm6]	T	C	1.513e^-4	0.463	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	9606269	X_9606269_DEL [dm3] X_9712236_DEL [dm6]	TATACATCCGT...	T	1.514e^-4	0.463	INTERGENIC
2L	17793824	2L_17793824_SNP [dm3] 2L_17793824_SNP [dm6]	A	T	1.517e^-4	0.463	DOWNSTREAM CR43419 INTRON CadN2
3R	20570027	3R_20570027_SNP [dm3] 3R_24744305_SNP [dm6]	T	G	1.525e^-4	0.463	INTRON tok	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12497117	3L_12497117_SNP [dm3] 3L_12504017_SNP [dm6]	A	G	1.528e^-4	0.463	UPSTREAM vih & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9168804	3R_9168804_SNP [dm3] 3R_13343082_SNP [dm6]	A	C	1.529e^-4	0.463	INTRON PK2-R1
2R	2704778	2R_2704778_SNP [dm3] 2R_6817273_SNP [dm6]	A	G	1.529e^-4	0.463	UTR_3_PRIME koi
X	14155643	X_14155643_SNP [dm3] X_14261610_SNP [dm6]	G	A	1.553e^-4	0.463	NON_SYNONYMOUS_CODING CG1461
2L	13916234	2L_13916234_SNP [dm3] 2L_13916234_SNP [dm6]	A	T	1.555e^-4	0.463	INTRON Ance-3	TF binding site BDTNP1_TFBS_twi
2L	13916330	2L_13916330_SNP [dm3] 2L_13916330_SNP [dm6]	A	T	1.555e^-4	0.463	INTRON Ance-3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4277196	3L_4277196_SNP [dm3] 3L_4277196_SNP [dm6]	C	T	1.561e^-4	0.463	SYNONYMOUS_CODING CG1273 UPSTREAM CG1311	TF binding site BDTNP1_TFBS_dl
2L	13567487	2L_13567487_SNP [dm3] 2L_13567487_SNP [dm6]	T	C	1.566e^-4	0.463	INTRON kuz
X	7652586	X_7652586_SNP [dm3] X_7758553_SNP [dm6]	A	T	1.572e^-4	0.463	INTERGENIC
3R	9213850	3R_9213850_SNP [dm3] 3R_13388128_SNP [dm6]	A	G	1.572e^-4	0.463	SYNONYMOUS_CODING CG9799 DOWNSTREAM CCHa2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15742430	2L_15742430_SNP [dm3] 2L_15742430_SNP [dm6]	T	A	1.572e^-4	0.463	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17119876	2R_17119876_SNP [dm3] 2R_21232371_SNP [dm6]	G	C	1.579e^-4	0.463	INTRON ASPP
2L	5149491	2L_5149491_SNP [dm3] 2L_5149491_SNP [dm6]	T	G	1.579e^-4	0.463	INTRON Msp300
3L	1547887	3L_1547887_SNP [dm3] 3L_1547887_SNP [dm6]	G	A	1.584e^-4	0.463	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	7670650	2R_7670650_SNP [dm3] 2R_11783145_SNP [dm6]	A	T	1.584e^-4	0.463	INTRON ths
3L	2534598	3L_2534598_SNP [dm3] 3L_2534598_SNP [dm6]	G	T	1.589e^-4	0.463	INTRON Spn
2L	10314433	2L_10314433_SNP [dm3] 2L_10314433_SNP [dm6]	T	A	1.590e^-4	0.463	UPSTREAM CG4972 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2587960	3L_2587960_INS [dm3] 3L_2587960_INS [dm6]	G	GTG	1.591e^-4	0.463	INTRON RpL8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6546527	2R_6546527_SNP [dm3] 2R_10659022_SNP [dm6]	G	T	1.591e^-4	0.463	INTERGENIC
X	2708189	X_2708189_SNP [dm3] X_2814156_SNP [dm6]	T	C	1.591e^-4	0.463	INTRON kirre
3R	1741115	3R_1741115_SNP [dm3] 3R_5915393_SNP [dm6]	G	A	1.593e^-4	0.463	INTRON CG34113
3R	9162930	3R_9162930_SNP [dm3] 3R_13337208_SNP [dm6]	G	T	1.600e^-4	0.463	INTERGENIC
3L	555451	3L_555451_SNP [dm3] 3L_555451_SNP [dm6]	C	T	1.601e^-4	0.463	INTRON hipk
3L	2729680	3L_2729680_SNP [dm3] 3L_2729680_SNP [dm6]	A	G	1.605e^-4	0.463	INTRON Mrtf
2L	20780594	2L_20780594_SNP [dm3] 2L_20780594_SNP [dm6]	T	C	1.607e^-4	0.463	INTRON cad	TF binding site mE1_TFBS_cad
3L	6324942	3L_6324942_SNP [dm3] 3L_6331842_SNP [dm6]	T	A	1.617e^-4	0.463	INTRON CG13300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13251548	3L_13251548_SNP [dm3] 3L_13258448_SNP [dm6]	G	T	1.618e^-4	0.463	INTRON caps
3R	9190193	3R_9190193_SNP [dm3] 3R_13364471_SNP [dm6]	C	A	1.619e^-4	0.463	UTR_5_PRIME poly UPSTREAM Dic1 INTRON poly	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	9012074	X_9012074_SNP [dm3] X_9118041_SNP [dm6]	C	T	1.620e^-4	0.463	DOWNSTREAM AP-1gamma INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	5138850	3R_5138850_SNP [dm3] 3R_9313128_SNP [dm6]	A	C	1.628e^-4	0.463	INTRON CG8861	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7052691	X_7052691_SNP [dm3] X_7158658_SNP [dm6]	C	T	1.630e^-4	0.463	INTRON CG9650	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	11795468	2R_11795468_SNP [dm3] 2R_15907963_SNP [dm6]	C	A	1.639e^-4	0.463	INTRON sli
2R	11795618	2R_11795618_SNP [dm3] 2R_15908113_SNP [dm6]	C	G	1.639e^-4	0.463	INTRON sli
2R	11795809	2R_11795809_SNP [dm3] 2R_15908304_SNP [dm6]	C	T	1.639e^-4	0.463	INTRON sli	TF binding site mE1_TFBS_chinmo
2R	4643486	2R_4643486_SNP [dm3] 2R_8755981_SNP [dm6]	C	T	1.650e^-4	0.463	INTRON CG8740	TF binding site mE1_TFBS_chinmo
2L	14096203	2L_14096203_DEL [dm3] 2L_14096203_DEL [dm6]	CTC	C	1.653e^-4	0.463	INTERGENIC
2R	8160575	2R_8160575_SNP [dm3] 2R_12273070_SNP [dm6]	T	A	1.653e^-4	0.463	INTRON Cam
3R	3054966	3R_3054966_SNP [dm3] 3R_7229244_SNP [dm6]	A	G	1.654e^-4	0.463	INTRON CG14608
3L	13035785	3L_13035785_SNP [dm3] 3L_13042685_SNP [dm6]	A	T	1.655e^-4	0.463	UPSTREAM snoRNA:Psi28S-3327a & 2 others INTRON RpS4	TF binding site mE1_TFBS_inv
3L	11572835	3L_11572835_SNP [dm3] 3L_11579735_SNP [dm6]	T	G	1.668e^-4	0.463	DOWNSTREAM CG43390 INTERGENIC
3L	10001136	3L_10001136_SNP [dm3] 3L_10008036_SNP [dm6]	G	A	1.671e^-4	0.463	INTRON dpr6
2R	10886133	2R_10886133_SNP [dm3] 2R_14998628_SNP [dm6]	A	C	1.672e^-4	0.463	INTERGENIC
2L	16372911	2L_16372911_SNP [dm3] 2L_16372911_SNP [dm6]	T	G	1.674e^-4	0.463	INTERGENIC
2R	20509245	2R_20509245_SNP [dm3] 2R_24621722_SNP [dm6]	C	A	1.676e^-4	0.463	INTRON CG13594
2R	20509289	2R_20509289_SNP [dm3] 2R_24621766_SNP [dm6]	G	A	1.676e^-4	0.463	INTRON CG13594
2R	20510789	2R_20510789_SNP [dm3] 2R_24623266_SNP [dm6]	G	T	1.676e^-4	0.463	INTRON CG13594
3R	21914352	3R_21914352_SNP [dm3] 3R_26088630_SNP [dm6]	A	C	1.676e^-4	0.463	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	3023550	3R_3023550_SNP [dm3] 3R_7197828_SNP [dm6]	A	T	1.677e^-4	0.463	INTRON lap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13847788	X_13847788_SNP [dm3] X_13953755_SNP [dm6]	C	G	1.680e^-4	0.463	INTRON mamo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3L	18185215	3L_18185215_SNP [dm3] 3L_18192115_SNP [dm6]	C	A	1.682e^-4	0.463	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2R	2431785	2R_2431785_SNP [dm3] 2R_6544280_SNP [dm6]	A	T	1.686e^-4	0.463	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5597673	3L_5597673_SNP [dm3] 3L_5604573_SNP [dm6]	A	T	1.688e^-4	0.463	UPSTREAM mthl2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
X	6909195	X_6909195_SNP [dm3] X_7015162_SNP [dm6]	A	G	1.689e^-4	0.463	DOWNSTREAM CG4593 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14976720	X_14976720_SNP [dm3] X_15082687_SNP [dm6]	C	T	1.691e^-4	0.463	UPSTREAM CG33178 DOWNSTREAM CG33177 EXON CR44960
3L	18398402	3L_18398402_SNP [dm3] 3L_18405302_SNP [dm6]	T	A	1.698e^-4	0.463	INTERGENIC	regulatory region REDfly_CRMs
3L	2162506	3L_2162506_DEL [dm3] 3L_2162506_DEL [dm6]	ACAATA	A	1.706e^-4	0.463	INTRON CG15822
X	7651177	X_7651177_SNP [dm3] X_7757144_SNP [dm6]	G	A	1.714e^-4	0.463	INTERGENIC
X	5367868	X_5367868_INS [dm3] X_5473835_INS [dm6]	T	TT	1.716e^-4	0.463	INTRON SPR
3L	12372904	3L_12372904_SNP [dm3] 3L_12379804_SNP [dm6]	T	C	1.723e^-4	0.463	INTRON Ncc69	TF binding site BDTNP1_TFBS_twi
2L	11369019	2L_11369019_SNP [dm3] 2L_11369019_SNP [dm6]	A	T	1.741e^-4	0.463	INTRON salr	TF binding site mE1_TFBS_cad
2L	163274	2L_163274_SNP [dm3] 2L_163274_SNP [dm6]	G	A	1.744e^-4	0.463	INTRON spen	TF binding site BDTNP1_TFBS_dl
3R	25816848	3R_25816848_SNP [dm3] 3R_29991126_SNP [dm6]	A	G	1.744e^-4	0.463	DOWNSTREAM Acph-1 & 1 other INTERGENIC
3R	25816858	3R_25816858_SNP [dm3] 3R_29991136_SNP [dm6]	A	T	1.744e^-4	0.463	DOWNSTREAM Acph-1 & 1 other INTERGENIC
3L	13126786	3L_13126786_SNP [dm3] 3L_13133686_SNP [dm6]	C	A	1.744e^-4	0.463	INTERGENIC
X	7625848	X_7625848_INS [dm3] X_7731815_INS [dm6]	G	GGTC	1.745e^-4	0.463	UTR_3_PRIME Pdp DOWNSTREAM CG12155
2R	16716760	2R_16716760_SNP [dm3] 2R_20829255_SNP [dm6]	C	T	1.750e^-4	0.463	SYNONYMOUS_CODING sktl INTRON insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18238335	3L_18238335_SNP [dm3] 3L_18245235_SNP [dm6]	C	T	1.750e^-4	0.463	INTERGENIC	TF binding site mE1_TFBS_HSA
X	6644009	X_6644009_SNP [dm3] X_6749976_SNP [dm6]	T	C	1.756e^-4	0.463	INTRON CG14439
2L	15742431	2L_15742431_INS [dm3] 2L_15742431_INS [dm6]	A	AG	1.762e^-4	0.463	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11857979	2L_11857979_SNP [dm3] 2L_11857979_SNP [dm6]	C	T	1.764e^-4	0.463	INTRON Pde1c
3R	9236192	3R_9236192_SNP [dm3] 3R_13410470_SNP [dm6]	C	A	1.767e^-4	0.463	INTRON yellow-e	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1375366	3L_1375366_SNP [dm3] 3L_1375366_SNP [dm6]	G	A	1.774e^-4	0.463	INTRON Ptp61F & 1 other
2L	12845193	2L_12845193_SNP [dm3] 2L_12845193_SNP [dm6]	G	T	1.774e^-4	0.463	INTERGENIC
X	7614811	X_7614811_SNP [dm3] X_7720778_SNP [dm6]	A	G	1.777e^-4	0.463	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	2708162	X_2708162_SNP [dm3] X_2814129_SNP [dm6]	C	T	1.779e^-4	0.463	INTRON kirre
3L	5787408	3L_5787408_SNP [dm3] 3L_5794308_SNP [dm6]	G	C	1.779e^-4	0.463	UPSTREAM Bre1 DOWNSTREAM Tektin-C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	18335927	3L_18335927_SNP [dm3] 3L_18342827_SNP [dm6]	A	G	1.780e^-4	0.463	INTERGENIC
3R	18772413	3R_18772413_SNP [dm3] 3R_22946691_SNP [dm6]	C	A	1.784e^-4	0.463	INTRON klg
3R	18772434	3R_18772434_SNP [dm3] 3R_22946712_SNP [dm6]	A	T	1.784e^-4	0.463	INTRON klg
2R	15399138	2R_15399138_SNP [dm3] 2R_19511633_SNP [dm6]	G	A	1.786e^-4	0.463	DOWNSTREAM Ir56d & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15399142	2R_15399142_SNP [dm3] 2R_19511637_SNP [dm6]	T	C	1.786e^-4	0.463	DOWNSTREAM Ir56d & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9179584	2L_9179584_SNP [dm3] 2L_9179584_SNP [dm6]	G	A	1.792e^-4	0.463	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14219716	3L_14219716_SNP [dm3] 3L_14226616_SNP [dm6]	A	G	1.797e^-4	0.463	INTRON nuf	TF binding site mE1_TFBS_bab1
X	12353495	X_12353495_SNP [dm3] X_12459462_SNP [dm6]	C	T	1.797e^-4	0.463	DOWNSTREAM Rab40 INTERGENIC
2R	17543031	2R_17543031_SNP [dm3] 2R_21655526_SNP [dm6]	G	T	1.797e^-4	0.463	DOWNSTREAM CR43786 INTRON CG10082	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17543037	2R_17543037_SNP [dm3] 2R_21655532_SNP [dm6]	A	C	1.797e^-4	0.463	DOWNSTREAM CR43786 INTRON CG10082	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10719454	3L_10719454_SNP [dm3] 3L_10726354_SNP [dm6]	G	T	1.798e^-4	0.463	INTERGENIC
3R	9249037	3R_9249037_SNP [dm3] 3R_13423315_SNP [dm6]	C	T	1.799e^-4	0.463	DOWNSTREAM Ir87a INTERGENIC
2L	3743185	2L_3743185_SNP [dm3] 2L_3743185_SNP [dm6]	G	T	1.801e^-4	0.463	INTRON CG10019
X	12624630	X_12624630_SNP [dm3] X_12730597_SNP [dm6]	C	T	1.806e^-4	0.463	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3023978	3R_3023978_SNP [dm3] 3R_7198256_SNP [dm6]	T	C	1.807e^-4	0.463	INTRON lap
X	19433948	X_19433948_SNP [dm3] X_19539915_SNP [dm6]	A	G	1.811e^-4	0.463	SPLICE_SITE_REGION CG32532 INTRON CG32532	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10109503	3R_10109503_SNP [dm3] 3R_14283781_SNP [dm6]	C	A	1.811e^-4	0.463	INTRON trx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	12163415	2L_12163415_SNP [dm3] 2L_12163415_SNP [dm6]	T	G	1.812e^-4	0.463	UPSTREAM ZnT33D DOWNSTREAM CG31861 INTRON CG31760
2R	8160516	2R_8160516_SNP [dm3] 2R_12273011_SNP [dm6]	T	G	1.817e^-4	0.463	INTRON Cam
2R	8160525	2R_8160525_MNP [dm3] 2R_12273020_MNP [dm6]	TAA	GTT	1.817e^-4	0.463	INTRON Cam
2R	8160559	2R_8160559_SNP [dm3] 2R_12273054_SNP [dm6]	G	A	1.817e^-4	0.463	INTRON Cam
2R	7637570	2R_7637570_SNP [dm3] 2R_11750065_SNP [dm6]	A	T	1.819e^-4	0.463	INTERGENIC
3L	18170939	3L_18170939_SNP [dm3] 3L_18177839_SNP [dm6]	C	T	1.820e^-4	0.463	INTRON W	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	6792591	3L_6792591_INS [dm3] 3L_6799491_INS [dm6]	A	AA	1.822e^-4	0.463	INTERGENIC	enhancer mE1_CBP_Enhancers
2L	17083233	2L_17083233_SNP [dm3] 2L_17083233_SNP [dm6]	G	T	1.826e^-4	0.463	INTERGENIC
2L	17996916	2L_17996916_SNP [dm3] 2L_17996916_SNP [dm6]	G	C	1.829e^-4	0.463	INTERGENIC
3L	5634933	3L_5634933_SNP [dm3] 3L_5641833_SNP [dm6]	C	T	1.830e^-4	0.463	UPSTREAM Blimp-1 INTRON Blimp-1
3L	4598783	3L_4598783_SNP [dm3] 3L_4598783_SNP [dm6]	C	T	1.830e^-4	0.463	UTR_5_PRIME Src64B	TF binding site BDTNP1_TFBS_da
3L	4598852	3L_4598852_SNP [dm3] 3L_4598852_SNP [dm6]	T	C	1.830e^-4	0.463	START_GAINED Src64B UTR_5_PRIME Src64B	TF binding site BDTNP1_TFBS_da
3L	12497123	3L_12497123_SNP [dm3] 3L_12504023_SNP [dm6]	G	T	1.832e^-4	0.463	UPSTREAM vih & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10986604	2R_10986604_DEL [dm3] 2R_15099099_DEL [dm6]	TT	T	1.833e^-4	0.463	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	4764020	3L_4764020_SNP [dm3] 3L_4764020_SNP [dm6]	A	C	1.833e^-4	0.463	INTRON RhoGEF64C
3L	4764371	3L_4764371_SNP [dm3] 3L_4764371_SNP [dm6]	C	T	1.833e^-4	0.463	INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
3L	4764395	3L_4764395_SNP [dm3] 3L_4764395_SNP [dm6]	C	T	1.833e^-4	0.463	INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
3L	4764402	3L_4764402_SNP [dm3] 3L_4764402_SNP [dm6]	G	C	1.833e^-4	0.463	INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
3L	4764407	3L_4764407_SNP [dm3] 3L_4764407_SNP [dm6]	G	C	1.833e^-4	0.463	INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
3L	4764411	3L_4764411_SNP [dm3] 3L_4764411_SNP [dm6]	G	A	1.833e^-4	0.463	INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
3L	4764629	3L_4764629_SNP [dm3] 3L_4764629_SNP [dm6]	A	T	1.833e^-4	0.463	SPLICE_SITE_REGION RhoGEF64C INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
3R	17101096	3R_17101096_SNP [dm3] 3R_21275374_SNP [dm6]	T	A	1.835e^-4	0.463	SPLICE_SITE_REGION CG3301 DOWNSTREAM CG3301 INTRON CG3301	TF binding site mE1_TFBS_cad
3R	10111858	3R_10111858_SNP [dm3] 3R_14286136_SNP [dm6]	T	G	1.839e^-4	0.463	INTRON trx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7637571	2R_7637571_SNP [dm3] 2R_11750066_SNP [dm6]	C	T	1.840e^-4	0.463	INTERGENIC
3L	5787400	3L_5787400_SNP [dm3] 3L_5794300_SNP [dm6]	C	G	1.841e^-4	0.463	UPSTREAM Bre1 DOWNSTREAM Tektin-C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	10989727	2R_10989727_SNP [dm3] 2R_15102222_SNP [dm6]	G	C	1.845e^-4	0.463	INTERGENIC
2L	20401519	2L_20401519_SNP [dm3] 2L_20401519_SNP [dm6]	G	A	1.857e^-4	0.463	INTRON CG10947
3L	369065	3L_369065_SNP [dm3] 3L_369065_SNP [dm6]	A	G	1.863e^-4	0.463	SYNONYMOUS_CODING trh	TF binding site mE1_TFBS_chinmo
X	20899187	X_20899187_SNP [dm3] X_21028160_SNP [dm6]	G	C	1.869e^-4	0.463	DOWNSTREAM CG1529 INTRON CG1532	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	5426349	3L_5426349_SNP [dm3] 3L_5433249_SNP [dm6]	T	C	1.875e^-4	0.463	INTRON CG34391
3L	5426369	3L_5426369_SNP [dm3] 3L_5433269_SNP [dm6]	T	A	1.875e^-4	0.463	INTRON CG34391
3L	5478267	3L_5478267_SNP [dm3] 3L_5485167_SNP [dm6]	G	T	1.875e^-4	0.463	INTERGENIC
3L	5498000	3L_5498000_SNP [dm3] 3L_5504900_SNP [dm6]	C	A	1.875e^-4	0.463	INTRON CG34342
3L	5502601	3L_5502601_SNP [dm3] 3L_5509501_SNP [dm6]	G	T	1.875e^-4	0.463	INTRON CG34342	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5507061	3L_5507061_SNP [dm3] 3L_5513961_SNP [dm6]	A	T	1.875e^-4	0.463	INTRON Lkr
3L	5592779	3L_5592779_SNP [dm3] 3L_5599679_SNP [dm6]	C	G	1.875e^-4	0.463	UTR_5_PRIME CG10591
3L	5611027	3L_5611027_SNP [dm3] 3L_5617927_SNP [dm6]	C	G	1.875e^-4	0.463	INTERGENIC
3L	5614497	3L_5614497_DEL [dm3] 3L_5621397_DEL [dm6]	TTTCATCTTTCCA...	T	1.875e^-4	0.463	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens
3L	5704080	3L_5704080_SNP [dm3] 3L_5710980_SNP [dm6]	A	T	1.875e^-4	0.463	INTRON sif
3L	5720092	3L_5720092_SNP [dm3] 3L_5726992_SNP [dm6]	T	A	1.875e^-4	0.463	INTRON sif
3L	8212433	3L_8212433_SNP [dm3] 3L_8219333_SNP [dm6]	T	C	1.879e^-4	0.463	UPSTREAM CG13674 INTERGENIC
3R	13761853	3R_13761853_SNP [dm3] 3R_17936131_SNP [dm6]	G	A	1.882e^-4	0.463	INTRON cpo
3L	3856877	3L_3856877_SNP [dm3] 3L_3856877_SNP [dm6]	T	C	1.884e^-4	0.463	INTRON Awh
2L	13592993	2L_13592993_SNP [dm3] 2L_13592993_SNP [dm6]	T	C	1.886e^-4	0.463	INTRON kuz
2L	20401468	2L_20401468_SNP [dm3] 2L_20401468_SNP [dm6]	A	C	1.889e^-4	0.463	INTRON CG10947
3R	3046197	3R_3046197_SNP [dm3] 3R_7220475_SNP [dm6]	A	C	1.891e^-4	0.463	UPSTREAM CG14605 INTERGENIC
X	3189698	X_3189698_INS [dm3] X_3295665_INS [dm6]	G	GAGAG	1.891e^-4	0.463	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2863779	2L_2863779_SNP [dm3] 2L_2863779_SNP [dm6]	C	T	1.893e^-4	0.463	INTRON CG2991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13129467	3L_13129467_SNP [dm3] 3L_13136367_SNP [dm6]	C	T	1.893e^-4	0.463	SYNONYMOUS_CODING CG33262	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8150823	2R_8150823_SNP [dm3] 2R_12263318_SNP [dm6]	A	G	1.896e^-4	0.463	INTRON Cam
3L	14219854	3L_14219854_SNP [dm3] 3L_14226754_SNP [dm6]	A	G	1.897e^-4	0.463	INTRON nuf	TF binding site mE1_TFBS_bab1
X	7614778	X_7614778_SNP [dm3] X_7720745_SNP [dm6]	T	C	1.902e^-4	0.463	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	7614781	X_7614781_SNP [dm3] X_7720748_SNP [dm6]	G	T	1.902e^-4	0.463	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16340495	2L_16340495_SNP [dm3] 2L_16340495_SNP [dm6]	G	A	1.902e^-4	0.463	SYNONYMOUS_CODING CG44405 UPSTREAM CG42266	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2598933	2L_2598933_SNP [dm3] 2L_2598933_SNP [dm6]	T	C	1.904e^-4	0.463	EXON CR44790
3L	7175112	3L_7175112_SNP [dm3] 3L_7182012_SNP [dm6]	G	T	1.905e^-4	0.463	INTRON Dscam2
3R	3074654	3R_3074654_SNP [dm3] 3R_7248932_SNP [dm6]	G	T	1.910e^-4	0.463	SYNONYMOUS_CODING CG1227 UPSTREAM CG10050 DOWNSTREAM CG10053	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	8937135	X_8937135_SNP [dm3] X_9043102_SNP [dm6]	A	G	1.911e^-4	0.463	INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	11924951	3L_11924951_SNP [dm3] 3L_11931851_SNP [dm6]	C	A	1.912e^-4	0.463	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3085121	3R_3085121_SNP [dm3] 3R_7259399_SNP [dm6]	C	T	1.912e^-4	0.463	INTRON Gld
3L	5597531	3L_5597531_SNP [dm3] 3L_5604431_SNP [dm6]	C	A	1.913e^-4	0.463	UPSTREAM mthl2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2L	7147822	2L_7147822_SNP [dm3] 2L_7147822_SNP [dm6]	C	A	1.913e^-4	0.463	INTRON Pvf3	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	17216786	2L_17216786_SNP [dm3] 2L_17216786_SNP [dm6]	G	A	1.917e^-4	0.463	INTRON beat-IIIc
2R	11961272	2R_11961272_SNP [dm3] 2R_16073767_SNP [dm6]	C	T	1.917e^-4	0.463	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11961274	2R_11961274_SNP [dm3] 2R_16073769_SNP [dm6]	G	T	1.917e^-4	0.463	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18224084	X_18224084_SNP [dm3] X_18330051_SNP [dm6]	G	A	1.920e^-4	0.463	INTRON CG6123
3R	9253618	3R_9253618_SNP [dm3] 3R_13427896_SNP [dm6]	T	C	1.920e^-4	0.463	UTR_3_PRIME Act87E DOWNSTREAM yrt
3R	9232315	3R_9232315_DEL [dm3] 3R_13406593_DEL [dm6]	TG	T	1.924e^-4	0.463	INTRON yellow-e2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	17217460	2L_17217460_SNP [dm3] 2L_17217460_SNP [dm6]	G	A	1.928e^-4	0.463	INTRON beat-IIIc
X	18014647	X_18014647_SNP [dm3] X_18120614_SNP [dm6]	G	C	1.929e^-4	0.463	DOWNSTREAM CR45605 EXON CR45605
3L	1228221	3L_1228221_SNP [dm3] 3L_1228221_SNP [dm6]	C	T	1.932e^-4	0.463	UTR_3_PRIME LysS INTRON mwh
3L	1542937	3L_1542937_SNP [dm3] 3L_1542937_SNP [dm6]	A	C	1.932e^-4	0.463	SYNONYMOUS_CODING CG7852 UTR_3_PRIME CG7852
3L	1543155	3L_1543155_SNP [dm3] 3L_1543155_SNP [dm6]	G	A	1.932e^-4	0.463	INTRON CG7852
3L	1545128	3L_1545128_SNP [dm3] 3L_1545128_SNP [dm6]	A	C	1.932e^-4	0.463	UPSTREAM Cct1 DOWNSTREAM CG7852 INTRON CG32313
3L	1545132	3L_1545132_SNP [dm3] 3L_1545132_SNP [dm6]	C	T	1.932e^-4	0.463	UPSTREAM Cct1 DOWNSTREAM CG7852 INTRON CG32313
3L	1545336	3L_1545336_SNP [dm3] 3L_1545336_SNP [dm6]	A	T	1.932e^-4	0.463	NON_SYNONYMOUS_CODING CG32313 UTR_3_PRIME CG32313 UPSTREAM Cct1 DOWNSTREAM CG7852
3L	1546238	3L_1546238_SNP [dm3] 3L_1546238_SNP [dm6]	C	A	1.932e^-4	0.463	UTR_5_PRIME Cct1 UPSTREAM CG32313	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1547665	3L_1547665_SNP [dm3] 3L_1547665_SNP [dm6]	T	A	1.932e^-4	0.463	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	1548294	3L_1548294_INS [dm3] 3L_1548294_INS [dm6]	A	TTTATCCACGTGGGC...	1.932e^-4	0.463	UTR_5_PRIME Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	1549508	3L_1549508_DEL [dm3] 3L_1549508_DEL [dm6]	CATATGTGCACATATGAC...	C	1.932e^-4	0.463	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	1549580	3L_1549580_SNP [dm3] 3L_1549580_SNP [dm6]	C	T	1.932e^-4	0.463	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
X	10450715	X_10450715_SNP [dm3] X_10556682_SNP [dm6]	C	T	1.932e^-4	0.463	UTR_5_PRIME spri INTRON spri
X	8061121	X_8061121_SNP [dm3] X_8167088_SNP [dm6]	G	T	1.932e^-4	0.463	UTR_3_PRIME CG2278
3R	3075312	3R_3075312_SNP [dm3] 3R_7249590_SNP [dm6]	A	T	1.932e^-4	0.463	UTR_5_PRIME CG1227 UPSTREAM CG10050 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3075323	3R_3075323_SNP [dm3] 3R_7249601_SNP [dm6]	C	T	1.932e^-4	0.463	UTR_5_PRIME CG1227 UPSTREAM CG10050 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2408668	3L_2408668_SNP [dm3] 3L_2408668_SNP [dm6]	A	C	1.934e^-4	0.463	UTR_3_PRIME CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7573281	2L_7573281_SNP [dm3] 2L_7573281_SNP [dm6]	A	G	1.935e^-4	0.463	INTRON RapGAP1
X	11670164	X_11670164_SNP [dm3] X_11776131_SNP [dm6]	C	G	1.936e^-4	0.463	INTRON dy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4434939	3L_4434939_SNP [dm3] 3L_4434939_SNP [dm6]	C	T	1.936e^-4	0.463	SYNONYMOUS_CODING nAChRbeta1	TF binding site mE1_TFBS_cad
3R	18924961	3R_18924961_SNP [dm3] 3R_23099239_SNP [dm6]	A	T	1.938e^-4	0.463	UPSTREAM CG6738 DOWNSTREAM CG6733 INTRON CG13830
3R	27363862	3R_27363862_SNP [dm3] 3R_31538140_SNP [dm6]	G	A	1.940e^-4	0.463	INTERGENIC
2L	13916235	2L_13916235_SNP [dm3] 2L_13916235_SNP [dm6]	C	A	1.943e^-4	0.463	INTRON Ance-3	TF binding site BDTNP1_TFBS_twi
2L	12356470	2L_12356470_INS [dm3] 2L_12356470_INS [dm6]	A	AA	1.944e^-4	0.463	UTR_5_PRIME CG17010 INTRON bru-2
2R	9458375	2R_9458375_SNP [dm3] 2R_13570870_SNP [dm6]	A	G	1.947e^-4	0.463	UTR_3_PRIME CG42807 DOWNSTREAM CG42807	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E
3L	1544680	3L_1544680_SNP [dm3] 3L_1544680_SNP [dm6]	T	A	1.953e^-4	0.464	UTR_3_PRIME CG7852 DOWNSTREAM CG32313
2L	20530465	2L_20530465_SNP [dm3] 2L_20530465_SNP [dm6]	A	G	1.957e^-4	0.464	UPSTREAM CG44270 INTERGENIC
2L	16643082	2L_16643082_SNP [dm3] 2L_16643082_SNP [dm6]	A	C	1.958e^-4	0.464	INTRON CG42389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	1739600	3R_1739600_SNP [dm3] 3R_5913878_SNP [dm6]	G	A	1.961e^-4	0.464	INTRON CG34113
X	12568278	X_12568278_SNP [dm3] X_12674245_SNP [dm6]	C	T	1.962e^-4	0.464	INTRON Tis11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	9458187	2R_9458187_SNP [dm3] 2R_13570682_SNP [dm6]	A	G	1.973e^-4	0.466	UTR_3_PRIME CG42807 DOWNSTREAM CG42807	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E
2R	4157198	2R_4157198_SNP [dm3] 2R_8269693_SNP [dm6]	C	A	1.991e^-4	0.469	UPSTREAM CG30371 INTERGENIC
3L	12766217	3L_12766217_SNP [dm3] 3L_12773117_SNP [dm6]	A	T	1.994e^-4	0.469	UTR_5_PRIME Hip1 DOWNSTREAM CG32106 INTRON Hip1	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	8150254	2R_8150254_SNP [dm3] 2R_12262749_SNP [dm6]	T	A	1.997e^-4	0.469	INTRON Cam	TF binding site BDTNP1_TFBS_dl
3R	9252976	3R_9252976_SNP [dm3] 3R_13427254_SNP [dm6]	G	T	1.997e^-4	0.469	SYNONYMOUS_CODING Act87E	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14370275	3L_14370275_INS [dm3] 3L_14377175_INS [dm6]	A	AG	1.998e^-4	0.469	INTERGENIC
3R	3045275	3R_3045275_SNP [dm3] 3R_7219553_SNP [dm6]	A	G	2.009e^-4	0.471	START_GAINED CG14605 UTR_5_PRIME CG14605
2R	8148207	2R_8148207_SNP [dm3] 2R_12260702_SNP [dm6]	G	C	2.016e^-4	0.472	INTRON Cam EXON CR43900	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	4136704	2L_4136704_SNP [dm3] 2L_4136704_SNP [dm6]	T	G	2.025e^-4	0.472	INTERGENIC
X	14977104	X_14977104_SNP [dm3] X_15083071_SNP [dm6]	G	C	2.025e^-4	0.472	DOWNSTREAM CG33177 & 1 other INTRON CG33178 & 1 other
3L	3808189	3L_3808189_SNP [dm3] 3L_3808189_SNP [dm6]	A	G	2.026e^-4	0.472	SYNONYMOUS_CODING IntS10 DOWNSTREAM CG32262
3L	18257687	3L_18257687_SNP [dm3] 3L_18264587_SNP [dm6]	T	A	2.026e^-4	0.472	INTERGENIC
2R	16120402	2R_16120402_SNP [dm3] 2R_20232897_SNP [dm6]	T	C	2.032e^-4	0.473	DOWNSTREAM tRNA:G3:56EFb INTRON CG11044
3L	10645283	3L_10645283_SNP [dm3] 3L_10652183_SNP [dm6]	A	G	2.036e^-4	0.473	INTRON CG32066
2R	8249704	2R_8249704_SNP [dm3] 2R_12362199_SNP [dm6]	A	G	2.044e^-4	0.473	SYNONYMOUS_CODING CG30043
3L	4772854	3L_4772854_SNP [dm3] 3L_4772854_SNP [dm6]	A	G	2.045e^-4	0.473	INTRON RhoGEF64C
2L	19485564	2L_19485564_SNP [dm3] 2L_19485564_SNP [dm6]	T	C	2.047e^-4	0.473	NON_SYNONYMOUS_CODING CG13084 UPSTREAM CG10195	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	7331810	2R_7331810_SNP [dm3] 2R_11444305_SNP [dm6]	T	G	2.049e^-4	0.473	INTRON qvr
2L	1755483	2L_1755483_SNP [dm3] 2L_1755483_SNP [dm6]	T	C	2.051e^-4	0.473	SYNONYMOUS_CODING Gr22f	TF binding site BDTNP1_TFBS_twi
2L	13288091	2L_13288091_SNP [dm3] 2L_13288091_SNP [dm6]	A	G	2.060e^-4	0.474	SYNONYMOUS_CODING Uvrag DOWNSTREAM CR44972
2L	2006493	2L_2006493_SNP [dm3] 2L_2006493_SNP [dm6]	T	G	2.066e^-4	0.474	UPSTREAM CR45712 & 1 other DOWNSTREAM CG15353 INTERGENIC
2R	9653622	2R_9653622_SNP [dm3] 2R_13766117_SNP [dm6]	A	G	2.067e^-4	0.474	INTERGENIC
3L	14220054	3L_14220054_SNP [dm3] 3L_14226954_SNP [dm6]	G	T	2.070e^-4	0.474	INTRON nuf	TF binding site mE1_TFBS_bab1
3L	4598781	3L_4598781_SNP [dm3] 3L_4598781_SNP [dm6]	T	A	2.070e^-4	0.474	UTR_5_PRIME Src64B	TF binding site BDTNP1_TFBS_da
3L	3798758	3L_3798758_SNP [dm3] 3L_3798758_SNP [dm6]	T	A	2.076e^-4	0.474	INTRON CG32264
2L	14275972	2L_14275972_SNP [dm3] 2L_14275972_SNP [dm6]	A	C	2.077e^-4	0.474	INTRON wb & 1 other
2L	14275976	2L_14275976_SNP [dm3] 2L_14275976_SNP [dm6]	G	A	2.077e^-4	0.474	INTRON wb & 1 other
3L	1163696	3L_1163696_SNP [dm3] 3L_1163696_SNP [dm6]	A	T	2.089e^-4	0.474	INTRON bab2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	1165952	3L_1165952_SNP [dm3] 3L_1165952_SNP [dm6]	A	G	2.090e^-4	0.474	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe
2L	4122146	2L_4122146_SNP [dm3] 2L_4122146_SNP [dm6]	T	A	2.098e^-4	0.474	SYNONYMOUS_CODING Sr-CI DOWNSTREAM Sr-CIII
X	12096398	X_12096398_SNP [dm3] X_12202365_SNP [dm6]	T	G	2.098e^-4	0.474	INTRON Ten-a	enhancer mE1_CBP_Enhancers
2R	14927162	2R_14927162_DEL [dm3] 2R_19039657_DEL [dm6]	TT	T	2.099e^-4	0.474	INTERGENIC
3L	3624348	3L_3624348_SNP [dm3] 3L_3624348_SNP [dm6]	G	T	2.105e^-4	0.474	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	10138473	3L_10138473_SNP [dm3] 3L_10145373_SNP [dm6]	A	C	2.105e^-4	0.474	INTERGENIC
X	14881864	X_14881864_SNP [dm3] X_14987831_SNP [dm6]	T	A	2.108e^-4	0.474	INTRON eag	TF binding site BDTNP1_TFBS_dl
2R	12274241	2R_12274241_SNP [dm3] 2R_16386736_SNP [dm6]	C	T	2.115e^-4	0.474	UTR_5_PRIME Sema-2b DOWNSTREAM CG43187	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	6381159	3L_6381159_SNP [dm3] 3L_6388059_SNP [dm6]	T	A	2.117e^-4	0.474	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11168542	2R_11168542_SNP [dm3] 2R_15281037_SNP [dm6]	T	C	2.123e^-4	0.474	SYNONYMOUS_CODING Trpm
X	22140618	X_22140618_SNP [dm3] X_22738782_SNP [dm6]	A	T	2.124e^-4	0.474	INTRON CR44997	transposable element FlyBase
2L	8747818	2L_8747818_SNP [dm3] 2L_8747818_SNP [dm6]	A	T	2.125e^-4	0.474	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	12088930	3L_12088930_SNP [dm3] 3L_12095830_SNP [dm6]	A	G	2.126e^-4	0.474	INTERGENIC
2L	5265409	2L_5265409_SNP [dm3] 2L_5265409_SNP [dm6]	A	T	2.131e^-4	0.474	SYNONYMOUS_CODING Cyp4ac1 UPSTREAM Cyp4ac2 INTRON tkv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1315733	3L_1315733_SNP [dm3] 3L_1315733_SNP [dm6]	A	G	2.132e^-4	0.474	SYNONYMOUS_CODING CG9153	TF binding site mE1_TFBS_cad
3L	2138628	3L_2138628_SNP [dm3] 3L_2138628_SNP [dm6]	C	A	2.136e^-4	0.474	INTRON zormin
2L	17793849	2L_17793849_SNP [dm3] 2L_17793849_SNP [dm6]	A	G	2.138e^-4	0.474	DOWNSTREAM CR43419 INTRON CadN2
2L	17771928	2L_17771928_SNP [dm3] 2L_17771928_SNP [dm6]	C	T	2.140e^-4	0.474	INTRON CadN	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17771930	2L_17771930_SNP [dm3] 2L_17771930_SNP [dm6]	A	C	2.140e^-4	0.474	INTRON CadN	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	3040099	3R_3040099_SNP [dm3] 3R_7214377_SNP [dm6]	T	G	2.144e^-4	0.474	UTR_3_PRIME CG14606	TF binding site mE1_TFBS_HSA
3R	9250746	3R_9250746_INS [dm3] 3R_13425024_INS [dm6]	A	AA	2.146e^-4	0.474	UPSTREAM Act87E DOWNSTREAM CR45591 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	3616374	3L_3616374_SNP [dm3] 3L_3616374_SNP [dm6]	G	C	2.146e^-4	0.474	NON_SYNONYMOUS_CODING CG10357	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	21448816	X_21448816_SNP [dm3] X_21577789_SNP [dm6]	T	C	2.147e^-4	0.474	INTERGENIC
3L	2757848	3L_2757848_SNP [dm3] 3L_2757848_SNP [dm6]	T	A	2.148e^-4	0.474	INTRON Mrtf
3L	12682385	3L_12682385_SNP [dm3] 3L_12689285_SNP [dm6]	A	G	2.149e^-4	0.474	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18352466	2R_18352466_SNP [dm3] 2R_22464961_SNP [dm6]	T	C	2.149e^-4	0.474	INTRON CG10384	TF binding site BDTNP1_TFBS_dl
2L	7612473	2L_7612473_SNP [dm3] 2L_7612473_SNP [dm6]	T	C	2.150e^-4	0.474	INTRON CG6739
2R	17987012	2R_17987012_SNP [dm3] 2R_22099507_SNP [dm6]	G	T	2.154e^-4	0.474	UTR_5_PRIME CG11073	TF binding site BDTNP1_TFBS_dl
3L	2318378	3L_2318378_SNP [dm3] 3L_2318378_SNP [dm6]	A	C	2.160e^-4	0.474	UPSTREAM CR45427 INTERGENIC
3L	10444453	3L_10444453_SNP [dm3] 3L_10451353_SNP [dm6]	G	A	2.162e^-4	0.474	INTERGENIC
3L	9243669	3L_9243669_DEL [dm3] 3L_9250569_DEL [dm6]	ATAA	A	2.162e^-4	0.474	INTRON CG4477	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12096409	X_12096409_SNP [dm3] X_12202376_SNP [dm6]	A	G	2.162e^-4	0.474	INTRON Ten-a	enhancer mE1_CBP_Enhancers
2L	16290569	2L_16290569_SNP [dm3] 2L_16290569_SNP [dm6]	G	A	2.163e^-4	0.474	SYNONYMOUS_CODING pkaap UPSTREAM CG17329
2L	3068228	2L_3068228_SNP [dm3] 2L_3068228_SNP [dm6]	G	A	2.167e^-4	0.474	DOWNSTREAM toc & 1 other INTERGENIC
2R	11796231	2R_11796231_SNP [dm3] 2R_15908726_SNP [dm6]	C	G	2.174e^-4	0.474	INTRON sli	TF binding site mE1_TFBS_chinmo
3R	23602283	3R_23602283_SNP [dm3] 3R_27776561_SNP [dm6]	A	G	2.175e^-4	0.474	INTRON CG34353
2L	3149502	2L_3149502_SNP [dm3] 2L_3149502_SNP [dm6]	G	C	2.175e^-4	0.474	INTRON Mad
3L	14219866	3L_14219866_SNP [dm3] 3L_14226766_SNP [dm6]	A	G	2.177e^-4	0.474	INTRON nuf	TF binding site mE1_TFBS_bab1
3L	14219867	3L_14219867_SNP [dm3] 3L_14226767_SNP [dm6]	C	T	2.177e^-4	0.474	INTRON nuf	TF binding site mE1_TFBS_bab1
2R	8135023	2R_8135023_SNP [dm3] 2R_12247518_SNP [dm6]	C	A	2.177e^-4	0.474	UPSTREAM CR44315 INTERGENIC
3L	5302903	3L_5302903_SNP [dm3] 3L_5309803_SNP [dm6]	C	T	2.179e^-4	0.474	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13789001	2R_13789001_SNP [dm3] 2R_17901496_SNP [dm6]	T	C	2.188e^-4	0.474	INTRON Elk
3L	12309043	3L_12309043_SNP [dm3] 3L_12315943_SNP [dm6]	G	T	2.189e^-4	0.474	INTERGENIC
3L	5704701	3L_5704701_SNP [dm3] 3L_5711601_SNP [dm6]	A	G	2.193e^-4	0.474	INTRON sif	TF binding site mE1_TFBS_chinmo
2L	7239627	2L_7239627_SNP [dm3] 2L_7239627_SNP [dm6]	C	T	2.194e^-4	0.474	INTRON Ndae1
2L	4788231	2L_4788231_SNP [dm3] 2L_4788231_SNP [dm6]	G	C	2.194e^-4	0.474	INTRON CG15630
2L	1384782	2L_1384782_SNP [dm3] 2L_1384782_SNP [dm6]	T	A	2.203e^-4	0.474	INTRON lea
2L	1384795	2L_1384795_SNP [dm3] 2L_1384795_SNP [dm6]	A	G	2.203e^-4	0.474	INTRON lea
2L	1384807	2L_1384807_DEL [dm3] 2L_1384807_DEL [dm6]	TTAGGCGATTG...	T	2.203e^-4	0.474	INTRON lea
3R	5447238	3R_5447238_SNP [dm3] 3R_9621516_SNP [dm6]	C	T	2.204e^-4	0.474	SPLICE_SITE_REGION CG8312 INTRON CG8312	TF binding site mE1_TFBS_cad
3L	82545	3L_82545_SNP [dm3] 3L_82545_SNP [dm6]	T	A	2.212e^-4	0.474	INTERGENIC
3L	87742	3L_87742_SNP [dm3] 3L_87742_SNP [dm6]	G	A	2.212e^-4	0.474	INTERGENIC
2R	7621302	2R_7621302_SNP [dm3] 2R_11733797_SNP [dm6]	G	A	2.215e^-4	0.474	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11399254	2L_11399254_SNP [dm3] 2L_11399254_SNP [dm6]	T	C	2.216e^-4	0.474	INTERGENIC	regulatory region REDfly_CRMs
3R	9355107	3R_9355107_SNP [dm3] 3R_13529385_SNP [dm6]	A	G	2.216e^-4	0.474	UPSTREAM CG42778 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7120337	3L_7120337_SNP [dm3] 3L_7127237_SNP [dm6]	G	A	2.220e^-4	0.474	NON_SYNONYMOUS_CODING BBS1 DOWNSTREAM CG8629	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3637929	2R_3637929_SNP [dm3] 2R_7750424_SNP [dm6]	A	C	2.228e^-4	0.475	INTRON CG30497 & 1 other
3L	12500505	3L_12500505_SNP [dm3] 3L_12507405_SNP [dm6]	T	C	2.230e^-4	0.475	SYNONYMOUS_CODING CG10654 DOWNSTREAM sti	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7163794	3L_7163794_SNP [dm3] 3L_7170694_SNP [dm6]	C	T	2.235e^-4	0.476	DOWNSTREAM Dscam2 INTRON Dscam2
2R	8160580	2R_8160580_SNP [dm3] 2R_12273075_SNP [dm6]	T	A	2.246e^-4	0.477	INTRON Cam
3R	3028092	3R_3028092_SNP [dm3] 3R_7202370_SNP [dm6]	A	G	2.248e^-4	0.477	INTRON CG14609
3L	13129227	3L_13129227_SNP [dm3] 3L_13136127_SNP [dm6]	A	C	2.249e^-4	0.477	UPSTREAM CG33262 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4966906	3L_4966906_SNP [dm3] 3L_4966906_SNP [dm6]	C	T	2.257e^-4	0.478	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3642883	2R_3642883_SNP [dm3] 2R_7755378_SNP [dm6]	T	C	2.260e^-4	0.478	INTRON CG30497 & 1 other
3R	9458694	3R_9458694_SNP [dm3] 3R_13632972_SNP [dm6]	T	C	2.261e^-4	0.478	SYNONYMOUS_CODING CG10841
3R	9190328	3R_9190328_SNP [dm3] 3R_13364606_SNP [dm6]	A	T	2.267e^-4	0.479	UPSTREAM Dic1 & 1 other INTRON poly	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	9355137	3R_9355137_SNP [dm3] 3R_13529415_SNP [dm6]	T	G	2.269e^-4	0.479	UPSTREAM CG42778 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	13143544	2L_13143544_SNP [dm3] 2L_13143544_SNP [dm6]	A	T	2.277e^-4	0.479	SYNONYMOUS_CODING CG16978 UPSTREAM CG9928
3L	20441882	3L_20441882_SNP [dm3] 3L_20448782_SNP [dm6]	T	A	2.282e^-4	0.479	INTRON CG5910
X	7645585	X_7645585_SNP [dm3] X_7751552_SNP [dm6]	G	A	2.284e^-4	0.479	INTERGENIC
3L	13358859	3L_13358859_SNP [dm3] 3L_13365759_SNP [dm6]	A	T	2.291e^-4	0.479	INTERGENIC
3L	13358902	3L_13358902_SNP [dm3] 3L_13365802_SNP [dm6]	T	C	2.291e^-4	0.479	INTERGENIC
2L	11562134	2L_11562134_SNP [dm3] 2L_11562134_SNP [dm6]	G	A	2.294e^-4	0.479	DOWNSTREAM CR44495 INTERGENIC
3R	9256877	3R_9256877_SNP [dm3] 3R_13431155_SNP [dm6]	T	A	2.295e^-4	0.479	INTRON yrt
X	4578068	X_4578068_DEL [dm3] X_4684035_DEL [dm6]	AAAAAA	A	2.296e^-4	0.479	INTRON Pp2C1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10104736	3L_10104736_SNP [dm3] 3L_10111636_SNP [dm6]	A	T	2.299e^-4	0.479	INTRON dpr6
2R	10861337	2R_10861337_SNP [dm3] 2R_14973832_SNP [dm6]	T	C	2.300e^-4	0.479	INTRON ckn
2R	2704252	2R_2704252_SNP [dm3] 2R_6816747_SNP [dm6]	T	A	2.301e^-4	0.479	INTRON koi	TF binding site mE1_TFBS_sens
2L	20481988	2L_20481988_DEL [dm3] 2L_20481988_DEL [dm6]	ATTTTCCAATGTGACGAA...	A	2.303e^-4	0.479	INTRON CR44980	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20530448	2L_20530448_SNP [dm3] 2L_20530448_SNP [dm6]	C	A	2.318e^-4	0.481	UPSTREAM CG44270 INTERGENIC
2L	20530483	2L_20530483_SNP [dm3] 2L_20530483_SNP [dm6]	T	C	2.318e^-4	0.481	UPSTREAM CG44270 INTERGENIC
2L	20530539	2L_20530539_SNP [dm3] 2L_20530539_SNP [dm6]	T	A	2.318e^-4	0.481	UPSTREAM CG44270 INTERGENIC
3R	10108882	3R_10108882_SNP [dm3] 3R_14283160_SNP [dm6]	A	G	2.326e^-4	0.481	INTRON trx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2R	15588905	2R_15588905_SNP [dm3] 2R_19701400_SNP [dm6]	A	T	2.327e^-4	0.481	UPSTREAM Obp56c INTERGENIC	regulatory region REDfly_CRMs
3L	3798198	3L_3798198_SNP [dm3] 3L_3798198_SNP [dm6]	T	C	2.327e^-4	0.481	INTRON CG32264
3L	14219885	3L_14219885_SNP [dm3] 3L_14226785_SNP [dm6]	T	A	2.335e^-4	0.481	INTRON nuf	TF binding site mE1_TFBS_bab1
3L	14219901	3L_14219901_SNP [dm3] 3L_14226801_SNP [dm6]	T	C	2.335e^-4	0.481	INTRON nuf	TF binding site mE1_TFBS_bab1
X	12353511	X_12353511_SNP [dm3] X_12459478_SNP [dm6]	C	T	2.336e^-4	0.481	DOWNSTREAM Rab40 INTERGENIC
2L	7230061	2L_7230061_SNP [dm3] 2L_7230061_SNP [dm6]	A	C	2.341e^-4	0.481	SYNONYMOUS_CODING Ndae1
2L	4840522	2L_4840522_SNP [dm3] 2L_4840522_SNP [dm6]	T	C	2.343e^-4	0.481	SYNONYMOUS_CODING CG12194 DOWNSTREAM mxt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4840523	2L_4840523_SNP [dm3] 2L_4840523_SNP [dm6]	T	A	2.343e^-4	0.481	NON_SYNONYMOUS_CODING CG12194 DOWNSTREAM mxt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	1386304	2R_1386304_SNP [dm3] 2R_5498799_SNP [dm6]	A	T	2.350e^-4	0.482	INTRON CG30438
2R	12506169	2R_12506169_SNP [dm3] 2R_16618664_SNP [dm6]	C	A	2.359e^-4	0.483	INTRON CG5065
3R	9232312	3R_9232312_INS [dm3] 3R_13406590_INS [dm6]	T	TG	2.362e^-4	0.483	INTRON yellow-e2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	2546879	3R_2546879_SNP [dm3] 3R_6721157_SNP [dm6]	C	T	2.364e^-4	0.483	INTRON pb	regulatory region REDfly_CRMs
X	7646165	X_7646165_SNP [dm3] X_7752132_SNP [dm6]	C	A	2.367e^-4	0.483	INTERGENIC
X	12610472	X_12610472_SNP [dm3] X_12716439_SNP [dm6]	C	T	2.371e^-4	0.484	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18422009	3L_18422009_SNP [dm3] 3L_18428909_SNP [dm6]	A	T	2.374e^-4	0.484	INTERGENIC
2L	11372464	2L_11372464_SNP [dm3] 2L_11372464_SNP [dm6]	C	T	2.387e^-4	0.486	INTRON salr	TF binding site mE1_TFBS_chinmo
2R	9789560	2R_9789560_SNP [dm3] 2R_13902055_SNP [dm6]	T	A	2.388e^-4	0.486	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21492593	3R_21492593_SNP [dm3] 3R_25666871_SNP [dm6]	C	A	2.395e^-4	0.486	UTR_5_PRIME Lgr3
3L	2465338	3L_2465338_SNP [dm3] 3L_2465338_SNP [dm6]	T	C	2.395e^-4	0.486	SYNONYMOUS_CODING CG45186 DOWNSTREAM CG45186
2R	4642651	2R_4642651_SNP [dm3] 2R_8755146_SNP [dm6]	G	A	2.403e^-4	0.487	INTRON CG8740
2L	4896321	2L_4896321_SNP [dm3] 2L_4896321_SNP [dm6]	T	G	2.403e^-4	0.487	INTRON CG3036
X	4987566	X_4987566_SNP [dm3] X_5093533_SNP [dm6]	C	T	2.412e^-4	0.488	INTRON rg & 1 other
2L	7229785	2L_7229785_SNP [dm3] 2L_7229785_SNP [dm6]	A	G	2.419e^-4	0.488	SYNONYMOUS_CODING Ndae1
2L	14275975	2L_14275975_SNP [dm3] 2L_14275975_SNP [dm6]	T	C	2.419e^-4	0.488	INTRON wb & 1 other
2R	5226797	2R_5226797_SNP [dm3] 2R_9339292_SNP [dm6]	G	C	2.420e^-4	0.488	INTRON CG13954 & 1 other
3R	10109249	3R_10109249_SNP [dm3] 3R_14283527_SNP [dm6]	G	T	2.426e^-4	0.488	INTRON trx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	6321417	2R_6321417_SNP [dm3] 2R_10433912_SNP [dm6]	G	A	2.440e^-4	0.491	INTRON RanBPM	TF binding site mE1_TFBS_sens
3R	3027621	3R_3027621_SNP [dm3] 3R_7201899_SNP [dm6]	C	T	2.450e^-4	0.492	SYNONYMOUS_CODING CG14609 DOWNSTREAM lap
2R	8155138	2R_8155138_SNP [dm3] 2R_12267633_SNP [dm6]	A	G	2.450e^-4	0.492	INTRON Cam
3L	11572878	3L_11572878_SNP [dm3] 3L_11579778_SNP [dm6]	C	T	2.458e^-4	0.493	SYNONYMOUS_STOP CG43390
3L	12309153	3L_12309153_INS [dm3] 3L_12316053_INS [dm6]	T	TTA	2.466e^-4	0.493	INTERGENIC
2R	16120451	2R_16120451_SNP [dm3] 2R_20232946_SNP [dm6]	G	T	2.467e^-4	0.493	DOWNSTREAM tRNA:G3:56EFb INTRON CG11044
X	7728154	X_7728154_SNP [dm3] X_7834121_SNP [dm6]	C	A	2.475e^-4	0.495	INTRON CG1402
3L	3621500	3L_3621500_INS [dm3] 3L_3621500_INS [dm6]	T	TT	2.481e^-4	0.495	UPSTREAM CG14974 INTERGENIC
2R	5223356	2R_5223356_SNP [dm3] 2R_9335851_SNP [dm6]	T	C	2.481e^-4	0.495	INTRON CG13954 & 1 other
2R	8150263	2R_8150263_SNP [dm3] 2R_12262758_SNP [dm6]	A	T	2.490e^-4	0.495	INTRON Cam	TF binding site BDTNP1_TFBS_dl
2R	13960506	2R_13960506_SNP [dm3] 2R_18073001_SNP [dm6]	C	A	2.490e^-4	0.495	INTRON CG34386
2R	17786789	2R_17786789_SNP [dm3] 2R_21899284_SNP [dm6]	C	T	2.496e^-4	0.496	INTRON Fili
2R	12128459	2R_12128459_INS [dm3] 2R_16240954_INS [dm6]	T	TT	2.503e^-4	0.497	UTR_3_PRIME CG15708 UPSTREAM krimp
3L	1316369	3L_1316369_SNP [dm3] 3L_1316369_SNP [dm6]	T	C	2.508e^-4	0.497	INTRON CG9153
3L	14191259	3L_14191259_SNP [dm3] 3L_14198159_SNP [dm6]	G	T	2.516e^-4	0.498	INTRON nuf
3L	3808034	3L_3808034_SNP [dm3] 3L_3808034_SNP [dm6]	G	A	2.517e^-4	0.498	SYNONYMOUS_CODING IntS10	TF binding site mE1_TFBS_sens
3L	11177971	3L_11177971_SNP [dm3] 3L_11184871_SNP [dm6]	C	G	2.522e^-4	0.499	INTRON GlcAT-P
2L	13667344	2L_13667344_SNP [dm3] 2L_13667344_SNP [dm6]	T	C	2.527e^-4	0.499	INTRON CG18507
3R	9169827	3R_9169827_SNP [dm3] 3R_13344105_SNP [dm6]	A	G	2.535e^-4	0.5	SYNONYMOUS_CODING PK2-R1	TF binding site mE1_TFBS_chinmo
2L	7336091	2L_7336091_SNP [dm3] 2L_7336091_SNP [dm6]	T	C	2.537e^-4	0.5	INTRON Wnt6
2R	9912090	2R_9912090_SNP [dm3] 2R_14024585_SNP [dm6]	G	T	2.541e^-4	0.5	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	19809761	2L_19809761_SNP [dm3] 2L_19809761_SNP [dm6]	C	T	2.547e^-4	0.5	UPSTREAM snRNA:U4:38AB INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10335633	2R_10335633_SNP [dm3] 2R_14448128_SNP [dm6]	T	A	2.548e^-4	0.5	INTRON Oaz	TF binding site mE1_TFBS_Trl
2R	18014889	2R_18014889_SNP [dm3] 2R_22127384_SNP [dm6]	T	C	2.559e^-4	0.5	UTR_5_PRIME GM130 UPSTREAM NtR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	4479399	X_4479399_SNP [dm3] X_4585366_SNP [dm6]	C	T	2.559e^-4	0.5	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	14219896	3L_14219896_SNP [dm3] 3L_14226796_SNP [dm6]	C	A	2.560e^-4	0.5	INTRON nuf	TF binding site mE1_TFBS_bab1
3L	85443	3L_85443_INS [dm3] 3L_85443_INS [dm6]	C	CACC	2.565e^-4	0.5	INTERGENIC
3L	14191072	3L_14191072_SNP [dm3] 3L_14197972_SNP [dm6]	A	G	2.565e^-4	0.5	INTRON nuf
3L	9272036	3L_9272036_SNP [dm3] 3L_9278936_SNP [dm6]	A	G	2.566e^-4	0.5	INTRON GluRIB
2R	18348273	2R_18348273_SNP [dm3] 2R_22460768_SNP [dm6]	T	C	2.567e^-4	0.5	INTRON CG10384
2R	11961280	2R_11961280_SNP [dm3] 2R_16073775_SNP [dm6]	G	A	2.572e^-4	0.5	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4598855	3L_4598855_SNP [dm3] 3L_4598855_SNP [dm6]	C	A	2.573e^-4	0.5	UTR_5_PRIME Src64B	TF binding site BDTNP1_TFBS_da
3R	9267865	3R_9267865_SNP [dm3] 3R_13442143_SNP [dm6]	C	A	2.574e^-4	0.5	DOWNSTREAM CR45679 INTERGENIC
3L	24529380	3L_24529380_DEL [dm3] 3L_24536281_DEL [dm6]	TT	T	2.576e^-4	0.5	UPSTREAM mRpS5 DOWNSTREAM CR12460 INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Ubx
3L	15267036	3L_15267036_SNP [dm3] 3L_15273936_SNP [dm6]	C	T	2.579e^-4	0.5	INTERGENIC
3L	4638561	3L_4638561_SNP [dm3] 3L_4638561_SNP [dm6]	C	A	2.588e^-4	0.5	INTRON axo
3R	22964479	3R_22964479_SNP [dm3] 3R_27138757_SNP [dm6]	G	A	2.590e^-4	0.5	INTRON CG6051
3R	22964546	3R_22964546_SNP [dm3] 3R_27138824_SNP [dm6]	C	T	2.590e^-4	0.5	INTRON CG6051
X	13171268	X_13171268_SNP [dm3] X_13277235_SNP [dm6]	A	T	2.602e^-4	0.5	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	10109274	3R_10109274_SNP [dm3] 3R_14283552_SNP [dm6]	C	T	2.602e^-4	0.5	INTRON trx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	10986565	2R_10986565_SNP [dm3] 2R_15099060_SNP [dm6]	G	T	2.605e^-4	0.5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	2570359	2R_2570359_DEL [dm3] 2R_6682854_DEL [dm6]	CTTAGGC	C	2.606e^-4	0.5	UPSTREAM CG15909 DOWNSTREAM CR44164 INTRON CG9422 EXON CR44165
3L	19934355	3L_19934355_SNP [dm3] 3L_19941255_SNP [dm6]	T	A	2.607e^-4	0.5	INTRON Ac76E
X	8289997	X_8289997_SNP [dm3] X_8395964_SNP [dm6]	G	C	2.607e^-4	0.5	INTERGENIC
2R	8158284	2R_8158284_SNP [dm3] 2R_12270779_SNP [dm6]	T	C	2.609e^-4	0.5	INTRON Cam
X	8438720	X_8438720_SNP [dm3] X_8544687_SNP [dm6]	A	G	2.612e^-4	0.5	INTRON Nrg
X	6909316	X_6909316_SNP [dm3] X_7015283_SNP [dm6]	T	C	2.615e^-4	0.5	DOWNSTREAM CG4593 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6909452	X_6909452_SNP [dm3] X_7015419_SNP [dm6]	C	A	2.615e^-4	0.5	DOWNSTREAM CG4593 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12615206	2L_12615206_SNP [dm3] 2L_12615206_SNP [dm6]	C	A	2.617e^-4	0.5	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	15105388	2R_15105388_SNP [dm3] 2R_19217883_SNP [dm6]	G	A	2.620e^-4	0.5	INTRON hppy
3R	26687210	3R_26687210_SNP [dm3] 3R_30861488_SNP [dm6]	A	C	2.625e^-4	0.5	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	11857635	2L_11857635_SNP [dm3] 2L_11857635_SNP [dm6]	G	T	2.628e^-4	0.5	INTRON Pde1c
3L	1164177	3L_1164177_DEL [dm3] 3L_1164177_DEL [dm6]	TT	T	2.631e^-4	0.5	INTRON bab2	regulatory region REDfly_CRMs
X	12353364	X_12353364_SNP [dm3] X_12459331_SNP [dm6]	T	A	2.632e^-4	0.5	DOWNSTREAM Rab40 INTERGENIC
3R	17101110	3R_17101110_SNP [dm3] 3R_21275388_SNP [dm6]	G	C	2.641e^-4	0.5	UTR_3_PRIME CG3301	TF binding site mE1_TFBS_cad
X	12353474	X_12353474_SNP [dm3] X_12459441_SNP [dm6]	T	A	2.642e^-4	0.5	DOWNSTREAM Rab40 INTERGENIC
2L	10467063	2L_10467063_SNP [dm3] 2L_10467063_SNP [dm6]	T	A	2.643e^-4	0.5	INTRON RluA-1
2L	10467067	2L_10467067_SNP [dm3] 2L_10467067_SNP [dm6]	T	C	2.643e^-4	0.5	INTRON RluA-1
2L	5963882	2L_5963882_SNP [dm3] 2L_5963882_SNP [dm6]	C	T	2.652e^-4	0.5	SYNONYMOUS_CODING psd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7650335	X_7650335_SNP [dm3] X_7756302_SNP [dm6]	A	G	2.652e^-4	0.5	INTERGENIC
3L	12121341	3L_12121341_SNP [dm3] 3L_12128241_SNP [dm6]	C	T	2.660e^-4	0.5	SYNONYMOUS_CODING CG34241 UPSTREAM Ir68b
3R	9236406	3R_9236406_SNP [dm3] 3R_13410684_SNP [dm6]	T	C	2.663e^-4	0.5	INTRON yellow-e
X	9012019	X_9012019_SNP [dm3] X_9117986_SNP [dm6]	A	G	2.665e^-4	0.5	DOWNSTREAM AP-1gamma INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	15563571	X_15563571_SNP [dm3] X_15669538_SNP [dm6]	G	A	2.667e^-4	0.5	UTR_5_PRIME CG15646 INTRON CG15646	TF binding site BDTNP1_TFBS_dl
X	15563598	X_15563598_SNP [dm3] X_15669565_SNP [dm6]	G	A	2.667e^-4	0.5	START_GAINED CG15646 UTR_5_PRIME CG15646 INTRON CG15646	TF binding site BDTNP1_TFBS_dl
3L	6660839	3L_6660839_SNP [dm3] 3L_6667739_SNP [dm6]	C	G	2.671e^-4	0.5	SYNONYMOUS_CODING CG32395
X	7614795	X_7614795_SNP [dm3] X_7720762_SNP [dm6]	G	A	2.671e^-4	0.5	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25631799	3R_25631799_SNP [dm3] 3R_29806077_SNP [dm6]	C	A	2.672e^-4	0.5	NON_SYNONYMOUS_CODING ncd UPSTREAM ca	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	9314748	2R_9314748_SNP [dm3] 2R_13427243_SNP [dm6]	G	A	2.673e^-4	0.5	INTRON CG42321	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	2179782	3L_2179782_SNP [dm3] 3L_2179782_SNP [dm6]	C	G	2.678e^-4	0.5	INTERGENIC
3L	21022157	3L_21022157_SNP [dm3] 3L_21029057_SNP [dm6]	A	C	2.684e^-4	0.5	INTRON CG10585	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	21022178	3L_21022178_SNP [dm3] 3L_21029078_SNP [dm6]	A	T	2.684e^-4	0.5	INTRON CG10585	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14899609	3R_14899609_SNP [dm3] 3R_19073887_SNP [dm6]	G	T	2.688e^-4	0.5	INTRON cdi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3621482	3L_3621482_SNP [dm3] 3L_3621482_SNP [dm6]	A	G	2.689e^-4	0.5	UPSTREAM CG14974 INTERGENIC
2R	12628531	2R_12628531_SNP [dm3] 2R_16741026_SNP [dm6]	C	G	2.693e^-4	0.5	INTERGENIC
X	17341862	X_17341862_SNP [dm3] X_17447829_SNP [dm6]	T	C	2.702e^-4	0.5	INTRON p-cup	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

Microbiota_OTU027 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results