DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.535e^-16)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.01586
In_3R_P	1.066e-10

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	35.0073	2.5018e-08

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

14921 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	2263303	2L_2263303_SNP [dm3] 2L_2263303_SNP [dm6]	G	A	0	0	UPSTREAM CG4270 DOWNSTREAM CG34049 INTERGENIC
2L	2263671	2L_2263671_SNP [dm3] 2L_2263671_SNP [dm6]	C	A	0	0	SYNONYMOUS_CODING CG4270 DOWNSTREAM CG34049
2L	4705805	2L_4705805_SNP [dm3] 2L_4705805_SNP [dm6]	G	A	0	0	SYNONYMOUS_CODING CG34351
2L	4705835	2L_4705835_SNP [dm3] 2L_4705835_SNP [dm6]	G	A	0	0	INTRON CG34351
2L	5309474	2L_5309474_SNP [dm3] 2L_5309474_SNP [dm6]	G	A	0	0	SYNONYMOUS_CODING vri	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6072224	2L_6072224_SNP [dm3] 2L_6072224_SNP [dm6]	C	G	0	0	UTR_5_PRIME Kr-h2 INTRON Kr-h2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	826687	2L_826687_SNP [dm3] 2L_826687_SNP [dm6]	C	G	0	0	UPSTREAM CG3862 INTRON dock	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	827229	2L_827229_SNP [dm3] 2L_827229_SNP [dm6]	G	A	0	0	INTRON dock	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	827445	2L_827445_SNP [dm3] 2L_827445_SNP [dm6]	A	T	0	0	INTRON dock	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2L	9939953	2L_9939953_SNP [dm3] 2L_9939953_SNP [dm6]	C	G	0	0	SYNONYMOUS_CODING CG4619 DOWNSTREAM CG5853	TF binding site mE1_TFBS_sens
2L	9939959	2L_9939959_SNP [dm3] 2L_9939959_SNP [dm6]	C	T	0	0	SYNONYMOUS_CODING CG4619 DOWNSTREAM CG5853	TF binding site mE1_TFBS_sens
2L	9940004	2L_9940004_SNP [dm3] 2L_9940004_SNP [dm6]	G	A	0	0	SYNONYMOUS_CODING CG4619 DOWNSTREAM CG5853	TF binding site mE1_TFBS_sens
2R	12296183	2R_12296183_SNP [dm3] 2R_16408678_SNP [dm6]	C	T	0	0	INTRON Sema-2b
2R	12805870	2R_12805870_SNP [dm3] 2R_16918365_SNP [dm6]	T	G	0	0	INTERGENIC
2R	12806467	2R_12806467_SNP [dm3] 2R_16918962_SNP [dm6]	T	A	0	0	INTERGENIC
2R	12825818	2R_12825818_SNP [dm3] 2R_16938313_SNP [dm6]	C	A	0	0	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2R	15408690	2R_15408690_SNP [dm3] 2R_19521185_SNP [dm6]	A	T	0	0	UTR_3_PRIME sm
2R	16289285	2R_16289285_SNP [dm3] 2R_20401780_SNP [dm6]	G	C	0	0	INTERGENIC
2R	4120855	2R_4120855_SNP [dm3] 2R_8233350_SNP [dm6]	C	T	0	0	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2R	4120927	2R_4120927_SNP [dm3] 2R_8233422_SNP [dm6]	T	A	0	0	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2R	8135377	2R_8135377_SNP [dm3] 2R_12247872_SNP [dm6]	G	A	0	0	UPSTREAM CR44315 INTERGENIC	transposable element FlyBase
2R	8135410	2R_8135410_SNP [dm3] 2R_12247905_SNP [dm6]	G	A	0	0	UPSTREAM CR44315 INTERGENIC	transposable element FlyBase
2R	8351745	2R_8351745_SNP [dm3] 2R_12464240_SNP [dm6]	A	G	0	0	INTRON Lac
3L	16015769	3L_16015769_SNP [dm3] 3L_16022669_SNP [dm6]	A	G	0	0	UPSTREAM Notum INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	16655338	3L_16655338_SNP [dm3] 3L_16662238_SNP [dm6]	G	A	0	0	UPSTREAM Baldspot DOWNSTREAM Galphaf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	19025316	3L_19025316_SNP [dm3] 3L_19032216_SNP [dm6]	A	T	0	0	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	5011150	3L_5011150_SNP [dm3] 3L_5011150_SNP [dm6]	C	T	0	0	DOWNSTREAM CG12027 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8243241	3L_8243241_SNP [dm3] 3L_8250141_SNP [dm6]	A	G	0	0	INTRON Dscam4
3L	9248319	3L_9248319_SNP [dm3] 3L_9255219_SNP [dm6]	A	C	0	0	INTRON GluRIB
3R	12047706	3R_12047706_SNP [dm3] 3R_16221984_SNP [dm6]	T	C	0	0	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12047720	3R_12047720_SNP [dm3] 3R_16221998_SNP [dm6]	T	A	0	0	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12563167	3R_12563167_SNP [dm3] 3R_16737445_SNP [dm6]	G	T	0	0	INTERGENIC	regulatory region REDfly_CRMs
3R	12715000	3R_12715000_SNP [dm3] 3R_16889278_SNP [dm6]	G	A	0	0	INTRON iab-8
3R	12715095	3R_12715095_SNP [dm3] 3R_16889373_SNP [dm6]	A	G	0	0	INTRON iab-8
3R	14270293	3R_14270293_SNP [dm3] 3R_18444571_SNP [dm6]	T	G	0	0	INTRON fru
3R	15718635	3R_15718635_SNP [dm3] 3R_19892913_SNP [dm6]	G	A	0	0	SYNONYMOUS_CODING CG4733	TF binding site mE1_TFBS_cad
3R	15873261	3R_15873261_SNP [dm3] 3R_20047539_SNP [dm6]	C	G	0	0	SPLICE_SITE_REGION Indy-2 & 1 other INTRON CG17193 & 2 others
3R	15881772	3R_15881772_SNP [dm3] 3R_20056050_SNP [dm6]	C	G	0	0	UTR_5_PRIME CG17193 DOWNSTREAM CG4390
3R	15881808	3R_15881808_SNP [dm3] 3R_20056086_SNP [dm6]	T	G	0	0	UTR_5_PRIME CG17193 DOWNSTREAM CG4390
3R	16899785	3R_16899785_SNP [dm3] 3R_21074063_SNP [dm6]	T	A	0	0	SYNONYMOUS_CODING dmrt93B UPSTREAM r-l
3R	17741951	3R_17741951_SNP [dm3] 3R_21916229_SNP [dm6]	T	C	0	0	DOWNSTREAM CG17843 INTERGENIC
3R	19997107	3R_19997107_SNP [dm3] 3R_24171385_SNP [dm6]	A	G	0	0	INTERGENIC
3R	19997245	3R_19997245_SNP [dm3] 3R_24171523_SNP [dm6]	G	A	0	0	INTERGENIC
3R	19997253	3R_19997253_SNP [dm3] 3R_24171531_SNP [dm6]	T	C	0	0	INTERGENIC
3R	21110752	3R_21110752_SNP [dm3] 3R_25285030_SNP [dm6]	T	A	0	0	SYNONYMOUS_CODING CG31300 UPSTREAM CG31104
3R	22521293	3R_22521293_SNP [dm3] 3R_26695571_SNP [dm6]	G	T	0	0	INTERGENIC
3R	23315696	3R_23315696_DEL [dm3] 3R_27489974_DEL [dm6]	GCA	T	0	0	DOWNSTREAM Gr98a INTERGENIC
3R	24909768	3R_24909768_SNP [dm3] 3R_29084046_SNP [dm6]	T	A	0	0	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26192824	3R_26192824_SNP [dm3] 3R_30367102_SNP [dm6]	A	G	0	0	UTR_3_PRIME hdc
3R	5050730	3R_5050730_SNP [dm3] 3R_9225008_SNP [dm6]	C	A	0	0	INTRON pum
3R	7520555	3R_7520555_SNP [dm3] 3R_11694833_SNP [dm6]	A	T	0	0	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	18724627	X_18724627_SNP [dm3] X_18830594_SNP [dm6]	C	T	0	0	UTR_5_PRIME CG7101 DOWNSTREAM CG42450	TF binding site mE1_TFBS_cad
X	9459640	X_9459640_SNP [dm3] X_9565607_SNP [dm6]	C	T	0	0	SYNONYMOUS_CODING Cubn
X	9900980	X_9900980_SNP [dm3] X_10006947_SNP [dm6]	G	C	0	0	DOWNSTREAM CG32694 INTERGENIC
3R	6069500	3R_6069500_SNP [dm3] 3R_10243778_SNP [dm6]	A	G	1.001e^-46	3.312e^-42	NON_SYNONYMOUS_CODING CG42795
3R	6069515	3R_6069515_SNP [dm3] 3R_10243793_SNP [dm6]	A	C	1.001e^-46	3.312e^-42	NON_SYNONYMOUS_CODING CG42795
2R	15886460	2R_15886460_SNP [dm3] 2R_19998955_SNP [dm6]	G	T	2.051e^-36	6.671e^-32	INTERGENIC
2L	2363118	2L_2363118_SNP [dm3] 2L_2363118_SNP [dm6]	A	G	1.317e^-24	4.210e^-20	UPSTREAM Rab5 INTRON Rab5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	23494787	3R_23494787_SNP [dm3] 3R_27669065_SNP [dm6]	C	G	2.425e^-23	7.492e^-19	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26493167	3R_26493167_SNP [dm3] 3R_30667445_SNP [dm6]	C	T	2.425e^-23	7.492e^-19	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	11131231	3R_11131231_SNP [dm3] 3R_15305509_SNP [dm6]	G	A	1.222e^-22	3.714e^-18	SYNONYMOUS_CODING Tm1 DOWNSTREAM Tm1 INTRON Tm1	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10120005	3R_10120005_INS [dm3] 3R_14294283_INS [dm6]	A	AA	6.492e^-22	1.941e^-17	INTRON CG12207
2L	5172718	2L_5172718_SNP [dm3] 2L_5172718_SNP [dm6]	T	C	5.117e^-21	1.506e^-16	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_sens
2R	13024181	2R_13024181_SNP [dm3] 2R_17136676_SNP [dm6]	T	C	6.215e^-19	8.861e^-15	NON_SYNONYMOUS_CODING Gbp UPSTREAM CG11395 DOWNSTREAM CR44391	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13743694	2R_13743694_SNP [dm3] 2R_17856189_SNP [dm6]	T	A	6.215e^-19	8.861e^-15	UTR_5_PRIME olf186-F INTRON olf186-F	TF binding site mE1_TFBS_Trl
2R	16909485	2R_16909485_SNP [dm3] 2R_21021980_SNP [dm6]	G	C	6.215e^-19	8.861e^-15	SYNONYMOUS_CODING RIC-3 INTRON RIC-3
2R	19546113	2R_19546113_SNP [dm3] 2R_23658590_SNP [dm6]	A	G	6.215e^-19	8.861e^-15	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19546203	2R_19546203_SNP [dm3] 2R_23658680_SNP [dm6]	T	A	6.215e^-19	8.861e^-15	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19547841	2R_19547841_INS [dm3] 2R_23660318_INS [dm6]	G	GGTG	6.215e^-19	8.861e^-15	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19547846	2R_19547846_SNP [dm3] 2R_23660323_SNP [dm6]	C	T	6.215e^-19	8.861e^-15	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5024339	2R_5024339_SNP [dm3] 2R_9136834_SNP [dm6]	C	T	6.215e^-19	8.861e^-15	INTRON alc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	5049031	2R_5049031_SNP [dm3] 2R_9161526_SNP [dm6]	A	G	6.215e^-19	8.861e^-15	UPSTREAM CG8008 DOWNSTREAM CG8046 EXON CR44283	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5050726	2R_5050726_SNP [dm3] 2R_9163221_SNP [dm6]	G	A	6.215e^-19	8.861e^-15	SYNONYMOUS_CODING CG8046	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16078957	3L_16078957_SNP [dm3] 3L_16085857_SNP [dm6]	C	A	6.215e^-19	8.861e^-15	UTR_3_PRIME Taspase1 DOWNSTREAM Taspase1 & 1 other
3L	16086777	3L_16086777_SNP [dm3] 3L_16093677_SNP [dm6]	C	T	6.215e^-19	8.861e^-15	INTRON ClC-c
3L	16090674	3L_16090674_SNP [dm3] 3L_16097574_SNP [dm6]	A	T	6.215e^-19	8.861e^-15	UPSTREAM ms_3_72Dt & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	16090728	3L_16090728_SNP [dm3] 3L_16097628_SNP [dm6]	T	C	6.215e^-19	8.861e^-15	UPSTREAM ms_3_72Dt & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	16090944	3L_16090944_SNP [dm3] 3L_16097844_SNP [dm6]	G	T	6.215e^-19	8.861e^-15	UTR_5_PRIME ms_3_72Dt UPSTREAM CG13074
3L	16091882	3L_16091882_SNP [dm3] 3L_16098782_SNP [dm6]	G	A	6.215e^-19	8.861e^-15	SYNONYMOUS_CODING ms_3_72Dt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16093354	3L_16093354_SNP [dm3] 3L_16100254_SNP [dm6]	T	C	6.215e^-19	8.861e^-15	UPSTREAM CG5414 DOWNSTREAM ms_3_72Dt INTERGENIC
3L	16096186	3L_16096186_SNP [dm3] 3L_16103086_SNP [dm6]	G	A	6.215e^-19	8.861e^-15	NON_SYNONYMOUS_CODING CG5414 DOWNSTREAM IntS9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16100933	3L_16100933_SNP [dm3] 3L_16107833_SNP [dm6]	C	T	6.215e^-19	8.861e^-15	UTR_3_PRIME Zn72D INTRON Zn72D
3L	16107583	3L_16107583_SNP [dm3] 3L_16114483_SNP [dm6]	C	T	6.215e^-19	8.861e^-15	SYNONYMOUS_CODING Taf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	17597624	3L_17597624_SNP [dm3] 3L_17604524_SNP [dm6]	G	C	6.215e^-19	8.861e^-15	INTRON Eip74EF
3L	17597951	3L_17597951_SNP [dm3] 3L_17604851_SNP [dm6]	T	G	6.215e^-19	8.861e^-15	INTRON Eip74EF
3L	4023804	3L_4023804_SNP [dm3] 3L_4023804_SNP [dm6]	T	C	6.215e^-19	8.861e^-15	SYNONYMOUS_CODING CG11594 DOWNSTREAM Mul1	TF binding site mE1_TFBS_chinmo
3L	4292703	3L_4292703_SNP [dm3] 3L_4292703_SNP [dm6]	G	A	6.215e^-19	8.861e^-15	NON_SYNONYMOUS_CODING CG1319 UPSTREAM CG15012	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	7385161	3L_7385161_SNP [dm3] 3L_7392061_SNP [dm6]	A	T	6.215e^-19	8.861e^-15	INTRON CG8563
3L	7385165	3L_7385165_SNP [dm3] 3L_7392065_SNP [dm6]	C	G	6.215e^-19	8.861e^-15	INTRON CG8563
3L	7385168	3L_7385168_SNP [dm3] 3L_7392068_SNP [dm6]	G	A	6.215e^-19	8.861e^-15	INTRON CG8563
3L	7385183	3L_7385183_SNP [dm3] 3L_7392083_SNP [dm6]	C	T	6.215e^-19	8.861e^-15	INTRON CG8563
3R	11044734	3R_11044734_SNP [dm3] 3R_15219012_SNP [dm6]	C	A	6.215e^-19	8.861e^-15	UPSTREAM CG12241 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11044749	3R_11044749_SNP [dm3] 3R_15219027_SNP [dm6]	G	A	6.215e^-19	8.861e^-15	UPSTREAM CG12241 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11044864	3R_11044864_SNP [dm3] 3R_15219142_SNP [dm6]	A	C	6.215e^-19	8.861e^-15	UPSTREAM CG12241 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	12563077	3R_12563077_SNP [dm3] 3R_16737355_SNP [dm6]	C	T	6.215e^-19	8.861e^-15	INTERGENIC	regulatory region REDfly_CRMs
3R	12563105	3R_12563105_SNP [dm3] 3R_16737383_SNP [dm6]	C	T	6.215e^-19	8.861e^-15	INTERGENIC	regulatory region REDfly_CRMs
3R	13583915	3R_13583915_SNP [dm3] 3R_17758193_SNP [dm6]	G	A	6.215e^-19	8.861e^-15	INTRON TyrR
3R	15872378	3R_15872378_SNP [dm3] 3R_20046656_SNP [dm6]	A	C	6.215e^-19	8.861e^-15	DOWNSTREAM Indy-2 INTRON CG17193 & 2 others
3R	15872389	3R_15872389_SNP [dm3] 3R_20046667_SNP [dm6]	C	A	6.215e^-19	8.861e^-15	INTRON CG17193 & 2 others
3R	15872404	3R_15872404_SNP [dm3] 3R_20046682_SNP [dm6]	G	T	6.215e^-19	8.861e^-15	INTRON CG17193 & 2 others
3R	20607629	3R_20607629_SNP [dm3] 3R_24781907_SNP [dm6]	G	A	6.215e^-19	8.861e^-15	NON_SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_inv
3R	26487645	3R_26487645_SNP [dm3] 3R_30661923_SNP [dm6]	T	C	6.215e^-19	8.861e^-15	INTERGENIC
3R	26487728	3R_26487728_SNP [dm3] 3R_30662006_SNP [dm6]	T	C	6.215e^-19	8.861e^-15	INTERGENIC
3R	26503213	3R_26503213_SNP [dm3] 3R_30677491_SNP [dm6]	T	C	6.215e^-19	8.861e^-15	INTERGENIC
3R	26504902	3R_26504902_SNP [dm3] 3R_30679180_SNP [dm6]	C	A	6.215e^-19	8.861e^-15	INTERGENIC
3R	26521232	3R_26521232_SNP [dm3] 3R_30695510_SNP [dm6]	T	C	6.215e^-19	8.861e^-15	UPSTREAM CG12069 DOWNSTREAM Pka-C2 INTERGENIC
3R	6802169	3R_6802169_SNP [dm3] 3R_10976447_SNP [dm6]	T	C	6.215e^-19	8.861e^-15	INTRON CG34114
3R	6805252	3R_6805252_SNP [dm3] 3R_10979530_SNP [dm6]	C	T	6.215e^-19	8.861e^-15	INTRON CG34114
3R	6805311	3R_6805311_SNP [dm3] 3R_10979589_SNP [dm6]	A	G	6.215e^-19	8.861e^-15	INTRON CG34114
X	12821506	X_12821506_SNP [dm3] X_12927473_SNP [dm6]	A	T	6.215e^-19	8.861e^-15	INTRON fne
X	12821521	X_12821521_SNP [dm3] X_12927488_SNP [dm6]	C	T	6.215e^-19	8.861e^-15	INTRON fne
X	12821551	X_12821551_SNP [dm3] X_12927518_SNP [dm6]	T	A	6.215e^-19	8.861e^-15	INTRON fne
X	12821568	X_12821568_SNP [dm3] X_12927535_SNP [dm6]	C	A	6.215e^-19	8.861e^-15	INTRON fne
X	12821581	X_12821581_SNP [dm3] X_12927548_SNP [dm6]	T	A	6.215e^-19	8.861e^-15	INTRON fne
X	12821583	X_12821583_SNP [dm3] X_12927550_SNP [dm6]	A	T	6.215e^-19	8.861e^-15	INTRON fne
X	14966052	X_14966052_DEL [dm3] X_15072019_DEL [dm6]	GCGG	G	6.215e^-19	8.861e^-15	UTR_3_PRIME Lsd-2
X	17357483	X_17357483_SNP [dm3] X_17463450_SNP [dm6]	T	A	6.215e^-19	8.861e^-15	INTRON CG43658
X	17357484	X_17357484_SNP [dm3] X_17463451_SNP [dm6]	T	C	6.215e^-19	8.861e^-15	INTRON CG43658
X	17357506	X_17357506_SNP [dm3] X_17463473_SNP [dm6]	T	G	6.215e^-19	8.861e^-15	INTRON CG43658
X	17357507	X_17357507_SNP [dm3] X_17463474_SNP [dm6]	A	G	6.215e^-19	8.861e^-15	INTRON CG43658
X	19625160	X_19625160_SNP [dm3] X_19731127_SNP [dm6]	A	C	6.215e^-19	8.861e^-15	DOWNSTREAM CG12531 INTRON AP-1-2beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	19626677	X_19626677_SNP [dm3] X_19732644_SNP [dm6]	C	T	6.215e^-19	8.861e^-15	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19627159	X_19627159_SNP [dm3] X_19733126_SNP [dm6]	C	T	6.215e^-19	8.861e^-15	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19628194	X_19628194_SNP [dm3] X_19734161_SNP [dm6]	C	T	6.215e^-19	8.861e^-15	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad
X	19630439	X_19630439_SNP [dm3] X_19736406_SNP [dm6]	T	A	6.215e^-19	8.861e^-15	INTRON CG14234	TF binding site mE1_TFBS_cad
X	19630443	X_19630443_DEL [dm3] X_19736410_DEL [dm6]	TAGGTTGCTCAT...	T	6.215e^-19	8.861e^-15	INTRON CG14234	TF binding site mE1_TFBS_cad
X	20856284	X_20856284_SNP [dm3] X_20985257_SNP [dm6]	G	A	6.215e^-19	8.861e^-15	DOWNSTREAM CG11666 INTERGENIC
X	3148263	X_3148263_SNP [dm3] X_3254230_SNP [dm6]	T	A	6.215e^-19	8.861e^-15	INTRON dnc
X	4537654	X_4537654_SNP [dm3] X_4643621_SNP [dm6]	T	G	6.215e^-19	8.861e^-15	INTRON CG3081 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	6856066	X_6856066_SNP [dm3] X_6962033_SNP [dm6]	C	T	6.215e^-19	8.861e^-15	INTRON CG14431 & 1 other
2R	4742193	2R_4742193_SNP [dm3] 2R_8854688_SNP [dm6]	C	T	1.165e^-18	1.234e^-14	UTR_3_PRIME sns
2R	5064126	2R_5064126_SNP [dm3] 2R_9176621_SNP [dm6]	G	A	1.165e^-18	1.234e^-14	SYNONYMOUS_CODING Rme-8	TF binding site BDTNP1_TFBS_dl
2R	6972369	2R_6972369_SNP [dm3] 2R_11084864_SNP [dm6]	C	A	1.165e^-18	1.234e^-14	UPSTREAM CG43188 INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8339742	2R_8339742_SNP [dm3] 2R_12452237_SNP [dm6]	T	C	1.165e^-18	1.234e^-14	UTR_3_PRIME Dyb UPSTREAM Lac DOWNSTREAM Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	16091879	3L_16091879_SNP [dm3] 3L_16098779_SNP [dm6]	C	T	1.165e^-18	1.234e^-14	SYNONYMOUS_CODING ms_3_72Dt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16099022	3L_16099022_SNP [dm3] 3L_16105922_SNP [dm6]	A	C	1.165e^-18	1.234e^-14	UPSTREAM IntS9 DOWNSTREAM Zn72D INTRON CG43295
3L	4636500	3L_4636500_SNP [dm3] 3L_4636500_SNP [dm6]	C	A	1.165e^-18	1.234e^-14	DOWNSTREAM axo INTRON axo
3R	11042962	3R_11042962_SNP [dm3] 3R_15217240_SNP [dm6]	G	A	1.165e^-18	1.234e^-14	SYNONYMOUS_CODING SIDL	TF binding site mE1_TFBS_cad
3R	18218081	3R_18218081_SNP [dm3] 3R_22392359_SNP [dm6]	A	C	1.165e^-18	1.234e^-14	UTR_3_PRIME CG13857 DOWNSTREAM CG7059
3R	24441834	3R_24441834_SNP [dm3] 3R_28616112_SNP [dm6]	A	G	1.165e^-18	1.234e^-14	UTR_5_PRIME CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26490887	3R_26490887_SNP [dm3] 3R_30665165_SNP [dm6]	G	A	1.165e^-18	1.234e^-14	INTRON CR45191
3R	26523299	3R_26523299_SNP [dm3] 3R_30697577_SNP [dm6]	T	C	1.165e^-18	1.234e^-14	UPSTREAM Pka-C2 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8968761	3R_8968761_SNP [dm3] 3R_13143039_SNP [dm6]	C	T	1.165e^-18	1.234e^-14	INTRON timeout & 2 others
X	19626119	X_19626119_SNP [dm3] X_19732086_SNP [dm6]	C	T	1.165e^-18	1.234e^-14	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	19739485	X_19739485_SNP [dm3] X_19845452_SNP [dm6]	A	T	1.165e^-18	1.234e^-14	INTRON pico	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13673339	2R_13673339_SNP [dm3] 2R_17785834_SNP [dm6]	C	T	1.166e^-18	1.234e^-14	UPSTREAM aft INTERGENIC
2R	15477260	2R_15477260_SNP [dm3] 2R_19589755_SNP [dm6]	G	T	1.168e^-18	1.234e^-14	INTRON sm
2R	15945519	2R_15945519_SNP [dm3] 2R_20058014_SNP [dm6]	T	A	1.168e^-18	1.234e^-14	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
2R	15945645	2R_15945645_SNP [dm3] 2R_20058140_SNP [dm6]	A	G	1.168e^-18	1.234e^-14	EXON CR44631	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16703359	2R_16703359_SNP [dm3] 2R_20815854_SNP [dm6]	C	T	1.168e^-18	1.234e^-14	INTERGENIC
3L	9523928	3L_9523928_SNP [dm3] 3L_9530828_SNP [dm6]	A	T	1.168e^-18	1.234e^-14	SYNONYMOUS_CODING Or67a
3R	6070015	3R_6070015_SNP [dm3] 3R_10244293_SNP [dm6]	T	C	1.168e^-18	1.234e^-14	SYNONYMOUS_CODING CG42795
3R	6070412	3R_6070412_SNP [dm3] 3R_10244690_SNP [dm6]	A	C	1.168e^-18	1.234e^-14	NON_SYNONYMOUS_CODING CG42795	TF binding site mE1_TFBS_cad
3R	6070693	3R_6070693_SNP [dm3] 3R_10244971_SNP [dm6]	G	T	1.168e^-18	1.234e^-14	SYNONYMOUS_CODING CG42795	TF binding site mE1_TFBS_cad
3R	6070726	3R_6070726_SNP [dm3] 3R_10245004_SNP [dm6]	G	A	1.168e^-18	1.234e^-14	NON_SYNONYMOUS_CODING CG42795	TF binding site mE1_TFBS_cad
3R	6070735	3R_6070735_SNP [dm3] 3R_10245013_SNP [dm6]	T	C	1.168e^-18	1.234e^-14	SYNONYMOUS_CODING CG42795	TF binding site mE1_TFBS_cad
3R	6806402	3R_6806402_SNP [dm3] 3R_10980680_SNP [dm6]	G	C	1.168e^-18	1.234e^-14	INTRON CG34114	TF binding site mE1_TFBS_cad
X	2574671	X_2574671_SNP [dm3] X_2680638_SNP [dm6]	A	G	1.168e^-18	1.234e^-14	SYNONYMOUS_CODING HLH3B	TF binding site mE1_TFBS_chinmo
2R	7086905	2R_7086905_SNP [dm3] 2R_11199400_SNP [dm6]	T	C	1.173e^-18	1.234e^-14	INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_zfh1
2R	7086920	2R_7086920_SNP [dm3] 2R_11199415_SNP [dm6]	C	G	1.173e^-18	1.234e^-14	INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16113377	3L_16113377_SNP [dm3] 3L_16120277_SNP [dm6]	T	A	1.173e^-18	1.234e^-14	UTR_3_PRIME Taf4	TF binding site mE1_TFBS_cad
3R	18864951	3R_18864951_SNP [dm3] 3R_23039229_SNP [dm6]	G	A	1.176e^-18	1.234e^-14	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	2944753	X_2944753_SNP [dm3] X_3050720_SNP [dm6]	A	T	1.176e^-18	1.234e^-14	INTRON kirre
X	2944802	X_2944802_SNP [dm3] X_3050769_SNP [dm6]	G	A	1.176e^-18	1.234e^-14	INTRON kirre
2R	9645132	2R_9645132_SNP [dm3] 2R_13757627_SNP [dm6]	G	A	1.180e^-18	1.234e^-14	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_sens
2R	9646545	2R_9646545_SNP [dm3] 2R_13759040_SNP [dm6]	C	A	1.180e^-18	1.234e^-14	DOWNSTREAM CG6280 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11038972	3L_11038972_SNP [dm3] 3L_11045872_SNP [dm6]	T	C	1.180e^-18	1.234e^-14	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_Trl
3L	16083083	3L_16083083_SNP [dm3] 3L_16089983_SNP [dm6]	C	T	1.180e^-18	1.234e^-14	SYNONYMOUS_CODING CG5235 UPSTREAM ClC-c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7484216	3L_7484216_SNP [dm3] 3L_7491116_SNP [dm6]	C	A	1.180e^-18	1.234e^-14	UPSTREAM Cyp316a1 INTERGENIC
3R	12563560	3R_12563560_SNP [dm3] 3R_16737838_SNP [dm6]	T	C	1.180e^-18	1.234e^-14	INTERGENIC
3R	12736249	3R_12736249_SNP [dm3] 3R_16910527_SNP [dm6]	A	G	1.180e^-18	1.234e^-14	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	26483198	3R_26483198_SNP [dm3] 3R_30657476_SNP [dm6]	C	G	1.180e^-18	1.234e^-14	INTERGENIC
3R	3475135	3R_3475135_SNP [dm3] 3R_7649413_SNP [dm6]	C	T	1.180e^-18	1.234e^-14	INTERGENIC
3R	3490470	3R_3490470_SNP [dm3] 3R_7664748_SNP [dm6]	G	T	1.180e^-18	1.234e^-14	INTRON Nlg1
3R	3629905	3R_3629905_SNP [dm3] 3R_7804183_SNP [dm6]	C	T	1.180e^-18	1.234e^-14	NON_SYNONYMOUS_CODING CG18268 DOWNSTREAM CG2993
3R	3644006	3R_3644006_SNP [dm3] 3R_7818284_SNP [dm6]	G	A	1.180e^-18	1.234e^-14	INTRON CG34384
3L	5008812	3L_5008812_SNP [dm3] 3L_5008812_SNP [dm6]	C	T	1.185e^-18	1.234e^-14	INTRON Con
2R	14549939	2R_14549939_INS [dm3] 2R_18662434_INS [dm6]	A	AT	1.218e^-18	1.234e^-14	UPSTREAM Gint3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14549944	2R_14549944_DEL [dm3] 2R_18662439_DEL [dm6]	GTC	G	1.218e^-18	1.234e^-14	UPSTREAM Gint3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19546452	2R_19546452_SNP [dm3] 2R_23658929_SNP [dm6]	A	C	1.218e^-18	1.234e^-14	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	3546593	2R_3546593_SNP [dm3] 2R_7659088_SNP [dm6]	A	T	1.218e^-18	1.234e^-14	DOWNSTREAM CG1339 & 1 other INTERGENIC
2R	3546611	2R_3546611_SNP [dm3] 2R_7659106_SNP [dm6]	A	G	1.218e^-18	1.234e^-14	DOWNSTREAM CG1339 & 1 other INTERGENIC
2R	5217280	2R_5217280_SNP [dm3] 2R_9329775_SNP [dm6]	T	C	1.218e^-18	1.234e^-14	INTRON CG13954 & 1 other
3L	14084925	3L_14084925_SNP [dm3] 3L_14091825_SNP [dm6]	A	T	1.260e^-18	1.237e^-14	INTERGENIC
3L	16111559	3L_16111559_DEL [dm3] 3L_16118459_DEL [dm6]	TG	T	1.260e^-18	1.237e^-14	INTRON Taf4	TF binding site mE1_TFBS_cad
3L	16095496	3L_16095496_SNP [dm3] 3L_16102396_SNP [dm6]	C	T	1.270e^-18	1.237e^-14	NON_SYNONYMOUS_CODING CG5414 SPLICE_SITE_REGION CG5414
2R	14169330	2R_14169330_SNP [dm3] 2R_18281825_SNP [dm6]	G	A	1.272e^-18	1.237e^-14	NON_SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19548249	2R_19548249_SNP [dm3] 2R_23660726_SNP [dm6]	A	G	1.272e^-18	1.237e^-14	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19548250	2R_19548250_SNP [dm3] 2R_23660727_SNP [dm6]	T	C	1.272e^-18	1.237e^-14	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16101074	3L_16101074_SNP [dm3] 3L_16107974_SNP [dm6]	G	T	1.275e^-18	1.237e^-14	UTR_3_PRIME Zn72D INTRON Zn72D
3L	16145813	3L_16145813_DEL [dm3] 3L_16152713_DEL [dm6]	TT	T	1.275e^-18	1.237e^-14	INTRON CG5151	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6858701	3R_6858701_SNP [dm3] 3R_11032979_SNP [dm6]	G	A	1.370e^-18	1.322e^-14	INTRON CG34114
3L	8149188	3L_8149188_SNP [dm3] 3L_8156088_SNP [dm6]	G	C	1.376e^-18	1.322e^-14	INTRON CG42445
3R	25582072	3R_25582072_SNP [dm3] 3R_29756350_SNP [dm6]	A	G	1.455e^-18	1.390e^-14	INTRON CR44953
2R	9240675	2R_9240675_SNP [dm3] 2R_13353170_SNP [dm6]	C	T	2.183e^-18	1.853e^-14	DOWNSTREAM CG17048 INTRON CR44206
3L	17447197	3L_17447197_SNP [dm3] 3L_17454097_SNP [dm6]	A	G	2.183e^-18	1.853e^-14	UTR_3_PRIME CG18265
3R	26136115	3R_26136115_SNP [dm3] 3R_30310393_SNP [dm6]	A	G	2.183e^-18	1.853e^-14	INTRON hdc
3R	7520441	3R_7520441_DEL [dm3] 3R_11694719_DEL [dm6]	AAAAATA	A	2.183e^-18	1.853e^-14	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	7520451	3R_7520451_SNP [dm3] 3R_11694729_SNP [dm6]	G	T	2.183e^-18	1.853e^-14	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	21337658	X_21337658_SNP [dm3] X_21466631_SNP [dm6]	T	A	2.183e^-18	1.853e^-14	DOWNSTREAM CR45507 INTERGENIC
2R	15788937	2R_15788937_SNP [dm3] 2R_19901432_SNP [dm6]	G	C	2.185e^-18	1.853e^-14	INTERGENIC
3L	12041112	3L_12041112_SNP [dm3] 3L_12048012_SNP [dm6]	T	A	2.190e^-18	1.853e^-14	INTRON rols
3L	12041120	3L_12041120_SNP [dm3] 3L_12048020_SNP [dm6]	A	T	2.190e^-18	1.853e^-14	INTRON rols
3L	8961436	3L_8961436_SNP [dm3] 3L_8968336_SNP [dm6]	A	T	2.190e^-18	1.853e^-14	UPSTREAM CG5026 DOWNSTREAM CG5021 INTERGENIC
3R	6056134	3R_6056134_SNP [dm3] 3R_10230412_SNP [dm6]	T	A	2.190e^-18	1.853e^-14	INTRON CG42795
3R	6805090	3R_6805090_SNP [dm3] 3R_10979368_SNP [dm6]	A	T	2.190e^-18	1.853e^-14	INTRON CG34114
3R	6805101	3R_6805101_SNP [dm3] 3R_10979379_SNP [dm6]	C	A	2.190e^-18	1.853e^-14	INTRON CG34114
2R	15945598	2R_15945598_SNP [dm3] 2R_20058093_SNP [dm6]	G	A	2.193e^-18	1.853e^-14	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	2944703	X_2944703_SNP [dm3] X_3050670_SNP [dm6]	G	T	2.199e^-18	1.853e^-14	INTRON kirre
3L	4837872	3L_4837872_SNP [dm3] 3L_4837872_SNP [dm6]	A	T	2.202e^-18	1.853e^-14	UTR_3_PRIME CG13707
2R	5017001	2R_5017001_SNP [dm3] 2R_9129496_SNP [dm6]	T	C	2.204e^-18	1.853e^-14	INTRON CG18659
3R	26108602	3R_26108602_SNP [dm3] 3R_30282880_SNP [dm6]	C	A	2.204e^-18	1.853e^-14	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	5053204	2R_5053204_SNP [dm3] 2R_9165699_SNP [dm6]	T	C	2.204e^-18	1.853e^-14	UTR_5_PRIME Rad51C UPSTREAM CG8046 DOWNSTREAM CG42382	TF binding site BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	17839441	2R_17839441_SNP [dm3] 2R_21951936_SNP [dm6]	G	A	2.210e^-18	1.853e^-14	SYNONYMOUS_CODING CG13488
3R	14134901	3R_14134901_SNP [dm3] 3R_18309179_SNP [dm6]	G	C	2.211e^-18	1.853e^-14	UTR_5_PRIME PKD
3L	22856769	3L_22856769_SNP [dm3] 3L_22863669_SNP [dm6]	C	A	2.218e^-18	1.853e^-14	UPSTREAM CG33169 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_cad
3L	8950427	3L_8950427_SNP [dm3] 3L_8957327_SNP [dm6]	G	A	2.220e^-18	1.853e^-14	SYNONYMOUS_CODING mRpL12 DOWNSTREAM GNBP3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	5049118	3R_5049118_INS [dm3] 3R_9223396_INS [dm6]	C	CTC	2.232e^-18	1.853e^-14	INTRON pum
X	19627291	X_19627291_SNP [dm3] X_19733258_SNP [dm6]	C	T	2.232e^-18	1.853e^-14	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9641082	2R_9641082_SNP [dm3] 2R_13753577_SNP [dm6]	C	G	2.243e^-18	1.853e^-14	UPSTREAM CG6280 INTERGENIC
3L	16108425	3L_16108425_SNP [dm3] 3L_16115325_SNP [dm6]	T	A	2.243e^-18	1.853e^-14	INTRON Taf4	TF binding site BDTNP1_TFBS_dl
3R	21110740	3R_21110740_SNP [dm3] 3R_25285018_SNP [dm6]	G	C	2.243e^-18	1.853e^-14	NON_SYNONYMOUS_CODING CG31300 UPSTREAM CG31104
3R	3471465	3R_3471465_SNP [dm3] 3R_7645743_SNP [dm6]	T	G	2.243e^-18	1.853e^-14	INTERGENIC
2R	19546308	2R_19546308_SNP [dm3] 2R_23658785_SNP [dm6]	T	C	2.282e^-18	1.853e^-14	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19546318	2R_19546318_SNP [dm3] 2R_23658795_SNP [dm6]	T	C	2.282e^-18	1.853e^-14	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19548142	2R_19548142_SNP [dm3] 2R_23660619_SNP [dm6]	C	T	2.282e^-18	1.853e^-14	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	4748297	2R_4748297_SNP [dm3] 2R_8860792_SNP [dm6]	G	A	2.282e^-18	1.853e^-14	INTRON RyR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19074713	2R_19074713_SNP [dm3] 2R_23187190_SNP [dm6]	G	A	2.286e^-18	1.853e^-14	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	7234690	2L_7234690_SNP [dm3] 2L_7234690_SNP [dm6]	C	T	2.295e^-18	1.853e^-14	SYNONYMOUS_CODING Ndae1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7086928	2R_7086928_SNP [dm3] 2R_11199423_SNP [dm6]	T	C	2.299e^-18	1.853e^-14	INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_zfh1
2R	4470189	2R_4470189_SNP [dm3] 2R_8582684_SNP [dm6]	T	G	2.314e^-18	1.857e^-14	INTRON CG42326
3R	25581647	3R_25581647_DEL [dm3] 3R_29755925_DEL [dm6]	TGAAACT	T	2.358e^-18	1.862e^-14	EXON CR44953
3L	9770453	3L_9770453_SNP [dm3] 3L_9777353_SNP [dm6]	T	C	2.385e^-18	1.862e^-14	INTRON CG8177
3L	9770485	3L_9770485_SNP [dm3] 3L_9777385_SNP [dm6]	C	G	2.385e^-18	1.862e^-14	INTRON CG8177
3L	9770499	3L_9770499_INS [dm3] 3L_9777399_INS [dm6]	A	ACTTTCA	2.385e^-18	1.862e^-14	INTRON CG8177
3L	9770551	3L_9770551_SNP [dm3] 3L_9777451_SNP [dm6]	A	C	2.385e^-18	1.862e^-14	INTRON CG8177
2R	19546440	2R_19546440_INS [dm3] 2R_23658917_INS [dm6]	A	AGTTGAG	2.412e^-18	1.862e^-14	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19546444	2R_19546444_INS [dm3] 2R_23658921_INS [dm6]	A	AGTACTTTCCATGTGAGCCC...	2.412e^-18	1.862e^-14	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	13298766	3L_13298766_SNP [dm3] 3L_13305666_SNP [dm6]	C	T	2.422e^-18	1.862e^-14	INTERGENIC
3L	16108248	3L_16108248_SNP [dm3] 3L_16115148_SNP [dm6]	T	C	2.422e^-18	1.862e^-14	INTRON Taf4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19626170	X_19626170_SNP [dm3] X_19732137_SNP [dm6]	T	C	2.422e^-18	1.862e^-14	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	12015393	3L_12015393_SNP [dm3] 3L_12022293_SNP [dm6]	C	T	2.499e^-18	1.914e^-14	INTRON rols
3L	14084008	3L_14084008_SNP [dm3] 3L_14090908_SNP [dm6]	C	T	2.592e^-18	1.977e^-14	INTERGENIC
2R	11490347	2R_11490347_SNP [dm3] 2R_15602842_SNP [dm6]	T	C	2.609e^-18	1.982e^-14	INTERGENIC
2L	10986023	2L_10986023_SNP [dm3] 2L_10986023_SNP [dm6]	C	A	2.641e^-18	1.998e^-14	NON_SYNONYMOUS_CODING piwi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	8717885	2R_8717885_SNP [dm3] 2R_12830380_SNP [dm6]	C	A	2.721e^-18	2.050e^-14	INTERGENIC
3R	18523354	3R_18523354_SNP [dm3] 3R_22697632_SNP [dm6]	A	T	4.132e^-18	3.060e^-14	UPSTREAM Cyp6d4 INTRON cd
2R	17845852	2R_17845852_SNP [dm3] 2R_21958347_SNP [dm6]	C	T	4.142e^-18	3.060e^-14	INTERGENIC
3R	8373758	3R_8373758_SNP [dm3] 3R_12548036_SNP [dm6]	A	T	4.143e^-18	3.060e^-14	UTR_5_PRIME Octbeta3R
3R	6064668	3R_6064668_SNP [dm3] 3R_10238946_SNP [dm6]	G	A	4.158e^-18	3.060e^-14	INTRON CG42795
2R	10954445	2R_10954445_SNP [dm3] 2R_15066940_SNP [dm6]	G	A	4.181e^-18	3.060e^-14	INTERGENIC
3L	1152545	3L_1152545_DEL [dm3] 3L_1152545_DEL [dm6]	GG	G	4.183e^-18	3.060e^-14	INTRON bab2
3R	22215973	3R_22215973_SNP [dm3] 3R_26390251_SNP [dm6]	C	G	4.197e^-18	3.060e^-14	INTERGENIC
3R	8373686	3R_8373686_SNP [dm3] 3R_12547964_SNP [dm6]	C	T	4.197e^-18	3.060e^-14	UTR_5_PRIME Octbeta3R
X	2944731	X_2944731_SNP [dm3] X_3050698_SNP [dm6]	C	G	4.210e^-18	3.060e^-14	INTRON kirre
4	824977	4_824977_SNP [dm3] 4_804351_SNP [dm6]	G	C	4.236e^-18	3.067e^-14	UPSTREAM Sox102F INTRON Sox102F	transposable element FlyBase
2R	12674935	2R_12674935_SNP [dm3] 2R_16787430_SNP [dm6]	G	A	4.330e^-18	3.085e^-14	UTR_5_PRIME CG5522 INTRON CG5522
2R	4335604	2R_4335604_SNP [dm3] 2R_8448099_SNP [dm6]	G	A	4.330e^-18	3.085e^-14	SPLICE_SITE_REGION Cyp4e1 DOWNSTREAM Cyp4e2 INTRON Cyp4e1
2R	9651132	2R_9651132_SNP [dm3] 2R_13763627_SNP [dm6]	C	T	4.340e^-18	3.085e^-14	INTERGENIC
3L	10847464	3L_10847464_SNP [dm3] 3L_10854364_SNP [dm6]	C	T	4.344e^-18	3.085e^-14	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18016082	3L_18016082_SNP [dm3] 3L_18022982_SNP [dm6]	T	C	4.344e^-18	3.085e^-14	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3R	6056140	3R_6056140_SNP [dm3] 3R_10230418_SNP [dm6]	G	A	4.466e^-18	3.143e^-14	INTRON CG42795
3L	13297851	3L_13297851_SNP [dm3] 3L_13304751_SNP [dm6]	A	G	4.481e^-18	3.143e^-14	DOWNSTREAM CR44555 INTERGENIC
3L	8174557	3L_8174557_SNP [dm3] 3L_8181457_SNP [dm6]	G	A	4.518e^-18	3.143e^-14	SYNONYMOUS_CODING CG7979 UPSTREAM mthl7
3L	9770556	3L_9770556_INS [dm3] 3L_9777456_INS [dm6]	T	TGTTT	4.522e^-18	3.143e^-14	INTRON CG8177
3L	9822875	3L_9822875_SNP [dm3] 3L_9829775_SNP [dm6]	C	A	4.522e^-18	3.143e^-14	UTR_5_PRIME CG43897 INTRON CG43897
X	10913424	X_10913424_DEL [dm3] X_11019391_DEL [dm6]	CC	C	4.569e^-18	3.143e^-14	INTRON CG42339
2R	9095348	2R_9095348_SNP [dm3] 2R_13207843_SNP [dm6]	G	A	4.578e^-18	3.143e^-14	NON_SYNONYMOUS_CODING FLASH	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9106290	2R_9106290_SNP [dm3] 2R_13218785_SNP [dm6]	G	T	4.578e^-18	3.143e^-14	DOWNSTREAM CG4646 INTRON CG4630	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9108835	2R_9108835_SNP [dm3] 2R_13221330_SNP [dm6]	G	T	4.578e^-18	3.143e^-14	SYNONYMOUS_CODING Fsn DOWNSTREAM CG17059	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	3481711	3R_3481711_SNP [dm3] 3R_7655989_SNP [dm6]	C	A	4.604e^-18	3.149e^-14	INTERGENIC
3L	18776525	3L_18776525_SNP [dm3] 3L_18783425_SNP [dm6]	C	A	4.649e^-18	3.168e^-14	INTRON ftz-f1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10379770	2L_10379770_SNP [dm3] 2L_10379770_SNP [dm6]	C	T	4.692e^-18	3.186e^-14	UTR_3_PRIME dpr19 UPSTREAM gny	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	5574038	2L_5574038_SNP [dm3] 2L_5574038_SNP [dm6]	C	T	4.772e^-18	3.228e^-14	INTERGENIC
3R	26943207	3R_26943207_SNP [dm3] 3R_31117485_SNP [dm6]	A	C	4.811e^-18	3.241e^-14	INTERGENIC
2R	15830064	2R_15830064_SNP [dm3] 2R_19942559_SNP [dm6]	G	C	4.826e^-18	3.241e^-14	INTERGENIC
X	19738957	X_19738957_SNP [dm3] X_19844924_SNP [dm6]	C	T	4.878e^-18	3.264e^-14	INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3513428	3R_3513428_SNP [dm3] 3R_7687706_SNP [dm6]	C	T	7.769e^-18	5.180e^-14	INTRON Nlg1
3R	3471120	3R_3471120_SNP [dm3] 3R_7645398_SNP [dm6]	A	C	7.840e^-18	5.209e^-14	INTERGENIC
X	2944732	X_2944732_SNP [dm3] X_3050699_SNP [dm6]	A	T	7.889e^-18	5.213e^-14	INTRON kirre
3L	13816701	3L_13816701_SNP [dm3] 3L_13823601_SNP [dm6]	G	C	7.903e^-18	5.213e^-14	INTERGENIC
3R	25921522	3R_25921522_SNP [dm3] 3R_30095800_SNP [dm6]	A	T	8.111e^-18	5.331e^-14	INTRON sima
3L	19334498	3L_19334498_SNP [dm3] 3L_19341398_SNP [dm6]	A	G	8.413e^-18	5.510e^-14	UTR_3_PRIME CG32206
2R	9094670	2R_9094670_SNP [dm3] 2R_13207165_SNP [dm6]	A	T	8.567e^-18	5.592e^-14	NON_SYNONYMOUS_CODING FLASH UPSTREAM lat & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12569371	3L_12569371_SNP [dm3] 3L_12576271_SNP [dm6]	A	C	8.616e^-18	5.604e^-14	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
2R	19546473	2R_19546473_SNP [dm3] 2R_23658950_SNP [dm6]	G	C	8.916e^-18	5.738e^-14	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19546477	2R_19546477_SNP [dm3] 2R_23658954_SNP [dm6]	T	A	8.916e^-18	5.738e^-14	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19546481	2R_19546481_SNP [dm3] 2R_23658958_SNP [dm6]	C	T	8.916e^-18	5.738e^-14	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	7385083	3L_7385083_INS [dm3] 3L_7391983_INS [dm6]	A	TTAT	9.011e^-18	5.779e^-14	INTRON CG8563
3R	5486969	3R_5486969_SNP [dm3] 3R_9661247_SNP [dm6]	T	G	9.489e^-18	6.065e^-14	INTRON CG9492
X	19738959	X_19738959_SNP [dm3] X_19844926_SNP [dm6]	G	C	1.019e^-17	6.466e^-14	INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19738960	X_19738960_SNP [dm3] X_19844927_SNP [dm6]	T	G	1.019e^-17	6.466e^-14	INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4470492	2R_4470492_SNP [dm3] 2R_8582987_SNP [dm6]	C	T	1.034e^-17	6.539e^-14	INTRON CG42326
3L	20312583	3L_20312583_SNP [dm3] 3L_20319483_SNP [dm6]	G	A	1.490e^-17	9.392e^-14	NON_SYNONYMOUS_CODING Spn77Ba	TF binding site mE1_TFBS_HSA
2R	4199798	2R_4199798_SNP [dm3] 2R_8312293_SNP [dm6]	T	A	1.603e^-17	1.007e^-13	DOWNSTREAM CR44450 INTERGENIC
2R	17499913	2R_17499913_SNP [dm3] 2R_21612408_SNP [dm6]	A	C	1.704e^-17	1.067e^-13	INTRON CG15673
3R	10169706	3R_10169706_SNP [dm3] 3R_14343984_SNP [dm6]	C	G	1.730e^-17	1.080e^-13	INTRON NK7.1
2R	17739988	2R_17739988_SNP [dm3] 2R_21852483_SNP [dm6]	A	C	1.761e^-17	1.096e^-13	INTERGENIC	TF binding site mE1_TFBS_cad
3L	7385075	3L_7385075_SNP [dm3] 3L_7391975_SNP [dm6]	A	T	1.802e^-17	1.117e^-13	INTRON CG8563
3R	23296091	3R_23296091_SNP [dm3] 3R_27470369_SNP [dm6]	T	A	1.888e^-17	1.167e^-13	INTERGENIC
3L	4964999	3L_4964999_SNP [dm3] 3L_4964999_SNP [dm6]	C	T	2.136e^-17	1.315e^-13	INTRON Con
3R	26487676	3R_26487676_DEL [dm3] 3R_30661954_DEL [dm6]	AA	A	2.778e^-17	1.699e^-13	INTERGENIC
3R	26487682	3R_26487682_SNP [dm3] 3R_30661960_SNP [dm6]	G	T	2.778e^-17	1.699e^-13	INTERGENIC
3L	9160316	3L_9160316_SNP [dm3] 3L_9167216_SNP [dm6]	A	G	3.054e^-17	1.862e^-13	INTRON Rdl
X	19738940	X_19738940_SNP [dm3] X_19844907_SNP [dm6]	T	A	3.235e^-17	1.966e^-13	INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6046662	3R_6046662_SNP [dm3] 3R_10220940_SNP [dm6]	A	G	5.292e^-17	3.205e^-13	UTR_3_PRIME Syn
2R	12668615	2R_12668615_SNP [dm3] 2R_16781110_SNP [dm6]	G	C	5.696e^-17	3.439e^-13	NON_SYNONYMOUS_CODING resilin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	4223432	2R_4223432_SNP [dm3] 2R_8335927_SNP [dm6]	A	T	5.986e^-17	3.602e^-13	INTRON pdm3
3R	356524	3R_356524_INS [dm3] 3R_4530802_INS [dm6]	T	TT	7.108e^-17	4.264e^-13	INTRON CG34357
3R	6042322	3R_6042322_SNP [dm3] 3R_10216600_SNP [dm6]	G	A	9.372e^-17	5.604e^-13	INTRON Syn
3L	22430444	3L_22430444_SNP [dm3] 3L_22437344_SNP [dm6]	C	A	1.070e^-16	6.379e^-13	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18017319	3L_18017319_SNP [dm3] 3L_18024219_SNP [dm6]	T	C	1.147e^-16	6.814e^-13	INTRON Eip75B
3L	12569575	3L_12569575_DEL [dm3] 3L_12576475_DEL [dm6]	AA	A	1.204e^-16	7.128e^-13	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
2R	13787683	2R_13787683_SNP [dm3] 2R_17900178_SNP [dm6]	G	T	1.209e^-16	7.139e^-13	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6069486	3R_6069486_SNP [dm3] 3R_10243764_SNP [dm6]	T	G	1.669e^-16	9.820e^-13	NON_SYNONYMOUS_CODING CG42795
3L	11451048	3L_11451048_SNP [dm3] 3L_11457948_SNP [dm6]	C	A	1.682e^-16	9.864e^-13	SYNONYMOUS_CODING CG12289 UPSTREAM CG7551	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	5709231	3R_5709231_SNP [dm3] 3R_9883509_SNP [dm6]	A	G	1.945e^-16	1.137e^-12	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl
2R	6305436	2R_6305436_INS [dm3] 2R_10417931_INS [dm6]	C	CCCATTTGGGTAC...	2.401e^-16	1.400e^-12	UPSTREAM CG42732 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16080932	3L_16080932_SNP [dm3] 3L_16087832_SNP [dm6]	T	C	2.438e^-16	1.417e^-12	UTR_3_PRIME CG5235 UPSTREAM Taspase1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	26078042	3R_26078042_SNP [dm3] 3R_30252320_SNP [dm6]	T	C	3.890e^-16	2.246e^-12	SYNONYMOUS_CODING CG9682 UPSTREAM CG18404	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26078045	3R_26078045_INS [dm3] 3R_30252323_INS [dm6]	T	TGGAAATGCGGCC...	3.890e^-16	2.246e^-12	CODON_INSERTION CG9682 UPSTREAM CG18404	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6168257	2R_6168257_SNP [dm3] 2R_10280752_SNP [dm6]	A	G	4.197e^-16	2.401e^-12	NON_SYNONYMOUS_CODING CAP UPSTREAM CAP INTRON CAP	TF binding site mE1_TFBS_chinmo
2R	6168840	2R_6168840_SNP [dm3] 2R_10281335_SNP [dm6]	A	G	4.197e^-16	2.401e^-12	SYNONYMOUS_CODING CAP UPSTREAM CAP INTRON CAP	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4737824	X_4737824_SNP [dm3] X_4843791_SNP [dm6]	G	A	4.197e^-16	2.401e^-12	INTRON CG42594
3L	23079740	3L_23079740_SNP [dm3] 3L_23086640_SNP [dm6]	G	C	4.267e^-16	2.433e^-12	INTERGENIC	transposable element FlyBase
2L	10987697	2L_10987697_SNP [dm3] 2L_10987697_SNP [dm6]	A	T	4.691e^-16	2.667e^-12	UPSTREAM CG12253 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3L	12569641	3L_12569641_SNP [dm3] 3L_12576541_SNP [dm6]	C	T	4.963e^-16	2.813e^-12	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
2R	14166716	2R_14166716_INS [dm3] 2R_18279211_INS [dm6]	T	AG	6.638e^-16	3.740e^-12	UTR_3_PRIME sbb DOWNSTREAM pen-2
2R	14166718	2R_14166718_MNP [dm3] 2R_18279213_MNP [dm6]	GTC	AAA	6.638e^-16	3.740e^-12	UTR_3_PRIME sbb DOWNSTREAM pen-2
3L	11449976	3L_11449976_SNP [dm3] 3L_11456876_SNP [dm6]	T	C	7.055e^-16	3.937e^-12	DOWNSTREAM CG12289 INTERGENIC
3L	11450010	3L_11450010_SNP [dm3] 3L_11456910_SNP [dm6]	A	C	7.055e^-16	3.937e^-12	DOWNSTREAM CG12289 INTERGENIC
3L	11450161	3L_11450161_SNP [dm3] 3L_11457061_SNP [dm6]	C	T	7.055e^-16	3.937e^-12	DOWNSTREAM CG12289 INTERGENIC
2R	10748402	2R_10748402_SNP [dm3] 2R_14860897_SNP [dm6]	A	T	7.079e^-16	3.937e^-12	UPSTREAM U3-55K DOWNSTREAM Inr-a INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	6168341	2R_6168341_SNP [dm3] 2R_10280836_SNP [dm6]	T	C	7.095e^-16	3.937e^-12	NON_SYNONYMOUS_CODING CAP UPSTREAM CAP INTRON CAP	TF binding site mE1_TFBS_chinmo
2R	6168819	2R_6168819_SNP [dm3] 2R_10281314_SNP [dm6]	C	T	7.124e^-16	3.942e^-12	SYNONYMOUS_CODING CAP UPSTREAM CAP INTRON CAP	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14166724	2R_14166724_SNP [dm3] 2R_18279219_SNP [dm6]	C	T	7.318e^-16	4.037e^-12	UTR_3_PRIME sbb DOWNSTREAM pen-2
2R	13783005	2R_13783005_SNP [dm3] 2R_17895500_SNP [dm6]	G	C	7.653e^-16	4.209e^-12	NON_SYNONYMOUS_CODING CG14491 INTRON Elk	TF binding site BDTNP1_TFBS_twi
3L	6797897	3L_6797897_SNP [dm3] 3L_6804797_SNP [dm6]	T	C	9.452e^-16	5.171e^-12	INTERGENIC	regulatory region REDfly_CRMs
3L	9160353	3L_9160353_SNP [dm3] 3L_9167253_SNP [dm6]	A	T	9.458e^-16	5.171e^-12	INTRON Rdl
2R	6169869	2R_6169869_SNP [dm3] 2R_10282364_SNP [dm6]	A	G	1.202e^-15	6.552e^-12	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16345466	3R_16345466_INS [dm3] 3R_20519744_INS [dm6]	C	CCACACAC	1.578e^-15	8.575e^-12	INTERGENIC
3L	11450099	3L_11450099_SNP [dm3] 3L_11456999_SNP [dm6]	C	T	1.655e^-15	8.971e^-12	DOWNSTREAM CG12289 INTERGENIC
3L	12028199	3L_12028199_SNP [dm3] 3L_12035099_SNP [dm6]	G	A	1.743e^-15	9.420e^-12	INTRON rols	TF binding site BDTNP1_TFBS_twi
2R	11946074	2R_11946074_SNP [dm3] 2R_16058569_SNP [dm6]	T	C	1.839e^-15	9.909e^-12	NON_SYNONYMOUS_CODING CG8405	TF binding site mE1_TFBS_inv
2L	3698295	2L_3698295_SNP [dm3] 2L_3698295_SNP [dm6]	C	T	1.946e^-15	1.045e^-11	UPSTREAM CG3604 DOWNSTREAM CG10031 INTERGENIC
3L	15723933	3L_15723933_INS [dm3] 3L_15730833_INS [dm6]	C	CGGGTTC	2.596e^-15	1.391e^-11	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19691087	3R_19691087_SNP [dm3] 3R_23865365_SNP [dm6]	A	T	4.883e^-15	2.608e^-11	INTRON Pli	TF binding site BDTNP1_TFBS_twi
2R	11862222	2R_11862222_SNP [dm3] 2R_15974717_SNP [dm6]	A	G	6.743e^-15	3.591e^-11	SYNONYMOUS_CODING Strn-Mlck
3R	20406134	3R_20406134_SNP [dm3] 3R_24580412_SNP [dm6]	A	G	8.296e^-15	4.399e^-11	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8497022	2R_8497022_SNP [dm3] 2R_12609517_SNP [dm6]	T	C	8.307e^-15	4.399e^-11	NON_SYNONYMOUS_CODING Amph INTRON Amph
3R	19691094	3R_19691094_SNP [dm3] 3R_23865372_SNP [dm6]	A	T	1.117e^-14	5.900e^-11	INTRON Pli	TF binding site BDTNP1_TFBS_twi
2L	5209291	2L_5209291_SNP [dm3] 2L_5209291_SNP [dm6]	C	T	1.157e^-14	6.091e^-11	UTR_3_PRIME Cyp28d2
2R	15272292	2R_15272292_SNP [dm3] 2R_19384787_SNP [dm6]	T	C	1.169e^-14	6.140e^-11	SYNONYMOUS_CODING CG10073
3L	22597845	3L_22597845_SNP [dm3] 3L_22604745_SNP [dm6]	T	G	1.248e^-14	6.536e^-11	INTRON CG14459
3L	16421232	3L_16421232_SNP [dm3] 3L_16428132_SNP [dm6]	G	T	1.357e^-14	7.085e^-11	INTRON CG33158 & 1 other
3R	17894258	3R_17894258_SNP [dm3] 3R_22068536_SNP [dm6]	A	T	1.653e^-14	8.561e^-11	INTRON how
3R	17894397	3R_17894397_SNP [dm3] 3R_22068675_SNP [dm6]	C	A	1.653e^-14	8.561e^-11	INTRON how
3R	17896037	3R_17896037_SNP [dm3] 3R_22070315_SNP [dm6]	C	A	1.653e^-14	8.561e^-11	INTRON how	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	8497023	2R_8497023_SNP [dm3] 2R_12609518_SNP [dm6]	T	C	2.034e^-14	1.050e^-10	SYNONYMOUS_CODING Amph INTRON Amph
2R	9336768	2R_9336768_SNP [dm3] 2R_13449263_SNP [dm6]	T	A	2.169e^-14	1.117e^-10	UTR_5_PRIME cnn INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	17891723	3R_17891723_SNP [dm3] 3R_22066001_SNP [dm6]	T	A	2.464e^-14	1.265e^-10	INTRON how
3R	26234558	3R_26234558_SNP [dm3] 3R_30408836_SNP [dm6]	A	G	2.667e^-14	1.362e^-10	INTERGENIC
3R	26237203	3R_26237203_SNP [dm3] 3R_30411481_SNP [dm6]	C	T	2.667e^-14	1.362e^-10	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19341145	2R_19341145_SNP [dm3] 2R_23453622_SNP [dm6]	C	G	3.508e^-14	1.786e^-10	INTRON CG43795
2R	19646653	2R_19646653_SNP [dm3] 2R_23759130_SNP [dm6]	G	T	3.756e^-14	1.907e^-10	INTRON CG9850	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	8008449	3R_8008449_SNP [dm3] 3R_12182727_SNP [dm6]	A	G	3.768e^-14	1.908e^-10	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	16510565	X_16510565_SNP [dm3] X_16616532_SNP [dm6]	A	G	3.932e^-14	1.986e^-10	INTRON CG9782	TF binding site BDTNP1_TFBS_twi
3L	19025302	3L_19025302_SNP [dm3] 3L_19032202_SNP [dm6]	G	C	4.665e^-14	2.350e^-10	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	17891188	3R_17891188_SNP [dm3] 3R_22065466_SNP [dm6]	G	A	6.504e^-14	3.267e^-10	INTRON how
3R	7520556	3R_7520556_SNP [dm3] 3R_11694834_SNP [dm6]	G	T	6.882e^-14	3.429e^-10	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	7520558	3R_7520558_SNP [dm3] 3R_11694836_SNP [dm6]	A	G	6.882e^-14	3.429e^-10	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	7520595	3R_7520595_SNP [dm3] 3R_11694873_SNP [dm6]	T	A	6.882e^-14	3.429e^-10	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	26236645	3R_26236645_SNP [dm3] 3R_30410923_SNP [dm6]	C	G	7.031e^-14	3.494e^-10	INTERGENIC
2R	12585214	2R_12585214_SNP [dm3] 2R_16697709_SNP [dm6]	G	T	8.167e^-14	4.048e^-10	INTRON CG30463
2R	6048596	2R_6048596_SNP [dm3] 2R_10161091_SNP [dm6]	A	C	8.409e^-14	4.157e^-10	INTRON KCNQ	TF binding site mE1_TFBS_HSA
X	4918550	X_4918550_MNP [dm3] X_5024517_MNP [dm6]	TAA	CGG	8.952e^-14	4.413e^-10	INTRON CR44833
3R	7520569	3R_7520569_SNP [dm3] 3R_11694847_SNP [dm6]	C	T	1.162e^-13	5.713e^-10	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	15856802	2R_15856802_SNP [dm3] 2R_19969297_SNP [dm6]	C	T	1.292e^-13	6.286e^-10	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	3813933	2R_3813933_SNP [dm3] 2R_7926428_SNP [dm6]	A	G	1.292e^-13	6.286e^-10	UPSTREAM CG8791 INTERGENIC
2R	3813934	2R_3813934_SNP [dm3] 2R_7926429_SNP [dm6]	T	C	1.292e^-13	6.286e^-10	UPSTREAM CG8791 INTERGENIC
3L	5010800	3L_5010800_SNP [dm3] 3L_5010800_SNP [dm6]	G	A	1.292e^-13	6.286e^-10	DOWNSTREAM CG12027 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12968372	2R_12968372_SNP [dm3] 2R_17080867_SNP [dm6]	C	A	1.362e^-13	6.594e^-10	INTRON CG30460
2R	12968453	2R_12968453_SNP [dm3] 2R_17080948_SNP [dm6]	C	T	1.362e^-13	6.594e^-10	INTRON CG30460
3L	9808680	3L_9808680_SNP [dm3] 3L_9815580_SNP [dm6]	T	A	1.381e^-13	6.650e^-10	UPSTREAM CG43897 INTRON CG43897
3L	9808681	3L_9808681_SNP [dm3] 3L_9815581_SNP [dm6]	T	G	1.381e^-13	6.650e^-10	UPSTREAM CG43897 INTRON CG43897
3L	2474069	3L_2474069_DEL [dm3] 3L_2474069_DEL [dm6]	AAA	A	1.619e^-13	7.773e^-10	DOWNSTREAM CG16762 INTRON CG45186
3L	12582827	3L_12582827_SNP [dm3] 3L_12589727_SNP [dm6]	T	G	1.630e^-13	7.806e^-10	INTRON ara	TF binding site BDTNP1_TFBS_twi
2R	8350724	2R_8350724_SNP [dm3] 2R_12463219_SNP [dm6]	C	T	1.916e^-13	9.128e^-10	INTRON Lac
X	20851193	X_20851193_SNP [dm3] X_20980166_SNP [dm6]	C	G	1.916e^-13	9.128e^-10	INTERGENIC
2R	8304874	2R_8304874_SNP [dm3] 2R_12417369_SNP [dm6]	C	G	1.957e^-13	9.303e^-10	NON_SYNONYMOUS_CODING CG13157	TF binding site mE1_TFBS_cad
3L	5011159	3L_5011159_SNP [dm3] 3L_5011159_SNP [dm6]	T	C	1.990e^-13	9.406e^-10	DOWNSTREAM CG12027 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13526916	3L_13526916_SNP [dm3] 3L_13533816_SNP [dm6]	T	C	1.994e^-13	9.406e^-10	UTR_3_PRIME bru-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13527597	3L_13527597_SNP [dm3] 3L_13534497_SNP [dm6]	T	A	1.994e^-13	9.406e^-10	UTR_3_PRIME bru-3 DOWNSTREAM bru-3
2R	15894643	2R_15894643_SNP [dm3] 2R_20007138_SNP [dm6]	G	C	2.004e^-13	9.412e^-10	EXON CR44628	TF binding site mE1_TFBS_Trl
2R	4893697	2R_4893697_SNP [dm3] 2R_9006192_SNP [dm6]	A	G	2.023e^-13	9.412e^-10	UPSTREAM Np INTRON Np	TF binding site mE1_TFBS_Trl
2R	8373159	2R_8373159_SNP [dm3] 2R_12485654_SNP [dm6]	A	G	2.026e^-13	9.412e^-10	INTRON Dh44-R2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8373278	2R_8373278_SNP [dm3] 2R_12485773_SNP [dm6]	C	T	2.026e^-13	9.412e^-10	SYNONYMOUS_CODING Dh44-R2 DOWNSTREAM CG34234	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8373279	2R_8373279_SNP [dm3] 2R_12485774_SNP [dm6]	T	G	2.026e^-13	9.412e^-10	NON_SYNONYMOUS_CODING Dh44-R2 DOWNSTREAM CG34234	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8588724	2R_8588724_SNP [dm3] 2R_12701219_SNP [dm6]	A	C	2.026e^-13	9.412e^-10	DOWNSTREAM wuc INTERGENIC
2R	19547202	2R_19547202_SNP [dm3] 2R_23659679_SNP [dm6]	C	T	2.137e^-13	9.901e^-10	UTR_5_PRIME Pde8 UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9808662	3L_9808662_DEL [dm3] 3L_9815562_DEL [dm6]	AGG	A	2.215e^-13	1.024e^-9	UPSTREAM CG43897 INTRON CG43897
3R	14027279	3R_14027279_SNP [dm3] 3R_18201557_SNP [dm6]	T	A	2.437e^-13	1.124e^-9	INTRON CG7985
X	9901037	X_9901037_SNP [dm3] X_10007004_SNP [dm6]	T	C	2.774e^-13	1.276e^-9	DOWNSTREAM CG32694 INTERGENIC
2R	17167185	2R_17167185_SNP [dm3] 2R_21279680_SNP [dm6]	A	G	2.949e^-13	1.353e^-9	INTRON Rgk3
3R	13463682	3R_13463682_SNP [dm3] 3R_17637960_SNP [dm6]	T	C	2.958e^-13	1.354e^-9	UPSTREAM CR45222 INTRON CG43175
3R	24270249	3R_24270249_SNP [dm3] 3R_28444527_SNP [dm6]	C	A	3.015e^-13	1.366e^-9	INTRON beat-VI
3L	1667108	3L_1667108_SNP [dm3] 3L_1667108_SNP [dm6]	C	T	3.021e^-13	1.366e^-9	UPSTREAM snoRNA:Me28S-A2634c & 2 others DOWNSTREAM RpL23A & 1 other EXON Uhg7
2R	15889560	2R_15889560_SNP [dm3] 2R_20002055_SNP [dm6]	A	T	3.037e^-13	1.366e^-9	INTERGENIC
3R	26239082	3R_26239082_SNP [dm3] 3R_30413360_SNP [dm6]	A	G	3.049e^-13	1.366e^-9	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16282022	2R_16282022_SNP [dm3] 2R_20394517_SNP [dm6]	C	T	3.051e^-13	1.366e^-9	INTERGENIC
2R	16282042	2R_16282042_SNP [dm3] 2R_20394537_SNP [dm6]	G	A	3.051e^-13	1.366e^-9	INTERGENIC
2R	16282087	2R_16282087_SNP [dm3] 2R_20394582_SNP [dm6]	G	A	3.051e^-13	1.366e^-9	INTERGENIC
2R	17109729	2R_17109729_SNP [dm3] 2R_21222224_SNP [dm6]	A	G	3.051e^-13	1.366e^-9	INTRON ASPP	TF binding site mE1_TFBS_cad
2R	17109742	2R_17109742_SNP [dm3] 2R_21222237_SNP [dm6]	T	G	3.051e^-13	1.366e^-9	INTRON ASPP	TF binding site mE1_TFBS_cad
2R	14272635	2R_14272635_SNP [dm3] 2R_18385130_SNP [dm6]	G	A	3.065e^-13	1.367e^-9	SYNONYMOUS_CODING CG15067 DOWNSTREAM IM1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23324433	3R_23324433_SNP [dm3] 3R_27498711_SNP [dm6]	A	G	3.068e^-13	1.367e^-9	INTERGENIC
2R	8351289	2R_8351289_SNP [dm3] 2R_12463784_SNP [dm6]	C	A	3.127e^-13	1.390e^-9	INTRON Lac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	4119755	2R_4119755_SNP [dm3] 2R_8232250_SNP [dm6]	C	T	3.158e^-13	1.400e^-9	UTR_5_PRIME dpn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	6189468	3R_6189468_SNP [dm3] 3R_10363746_SNP [dm6]	T	G	3.242e^-13	1.431e^-9	INTRON Rfx	TF binding site mE1_TFBS_cad
3R	6189486	3R_6189486_SNP [dm3] 3R_10363764_SNP [dm6]	G	T	3.242e^-13	1.431e^-9	INTRON Rfx	TF binding site mE1_TFBS_cad
2R	4038024	2R_4038024_SNP [dm3] 2R_8150519_SNP [dm6]	G	T	3.333e^-13	1.464e^-9	INTRON Lpin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4038575	2R_4038575_SNP [dm3] 2R_8151070_SNP [dm6]	A	T	3.333e^-13	1.464e^-9	INTRON Lpin & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7194857	3R_7194857_SNP [dm3] 3R_11369135_SNP [dm6]	C	T	3.419e^-13	1.498e^-9	INTRON pros	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12968510	2R_12968510_SNP [dm3] 2R_17081005_SNP [dm6]	C	A	3.515e^-13	1.537e^-9	INTRON CG30460
3R	22536809	3R_22536809_SNP [dm3] 3R_26711087_SNP [dm6]	G	C	3.790e^-13	1.653e^-9	INTRON amon
2R	15882527	2R_15882527_SNP [dm3] 2R_19995022_SNP [dm6]	A	T	4.481e^-13	1.950e^-9	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12296156	2R_12296156_SNP [dm3] 2R_16408651_SNP [dm6]	C	T	4.515e^-13	1.960e^-9	INTRON Sema-2b
3R	11599286	3R_11599286_SNP [dm3] 3R_15773564_SNP [dm6]	C	A	4.573e^-13	1.962e^-9	UPSTREAM CG4525 DOWNSTREAM CR45206 INTERGENIC
3R	8901647	3R_8901647_SNP [dm3] 3R_13075925_SNP [dm6]	C	T	4.573e^-13	1.962e^-9	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	9766072	3R_9766072_SNP [dm3] 3R_13940350_SNP [dm6]	C	T	4.573e^-13	1.962e^-9	INTERGENIC
3R	9766074	3R_9766074_SNP [dm3] 3R_13940352_SNP [dm6]	C	T	4.573e^-13	1.962e^-9	INTERGENIC
3R	9955712	3R_9955712_INS [dm3] 3R_14129990_INS [dm6]	A	ATTTGTAATAATAATTT...	4.573e^-13	1.962e^-9	UTR_3_PRIME RpII140 DOWNSTREAM CG14356 & 1 other	TF binding site mE1_TFBS_cad
3R	13586862	3R_13586862_SNP [dm3] 3R_17761140_SNP [dm6]	C	G	4.603e^-13	1.967e^-9	INTRON TyrR
2R	3725661	2R_3725661_SNP [dm3] 2R_7838156_SNP [dm6]	A	T	4.605e^-13	1.967e^-9	INTRON Dgk	TF binding site mE1_TFBS_chinmo
3R	23834536	3R_23834536_SNP [dm3] 3R_28008814_SNP [dm6]	G	C	4.657e^-13	1.985e^-9	INTERGENIC
3R	9478677	3R_9478677_SNP [dm3] 3R_13652955_SNP [dm6]	C	T	4.715e^-13	2.002e^-9	UTR_3_PRIME rin DOWNSTREAM rin
2R	14272657	2R_14272657_SNP [dm3] 2R_18385152_SNP [dm6]	C	T	4.720e^-13	2.002e^-9	NON_SYNONYMOUS_CODING CG15067 DOWNSTREAM IM1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9901366	X_9901366_SNP [dm3] X_10007333_SNP [dm6]	C	T	4.764e^-13	2.010e^-9	DOWNSTREAM CG32694 INTERGENIC
3R	13690028	3R_13690028_SNP [dm3] 3R_17864306_SNP [dm6]	G	A	4.772e^-13	2.010e^-9	INTRON tinc
3R	23182954	3R_23182954_SNP [dm3] 3R_27357232_SNP [dm6]	T	A	4.772e^-13	2.010e^-9	INTRON CG42534	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	4119812	2R_4119812_SNP [dm3] 2R_8232307_SNP [dm6]	G	T	4.785e^-13	2.011e^-9	UTR_5_PRIME dpn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	1666426	3L_1666426_SNP [dm3] 3L_1666426_SNP [dm6]	C	T	4.867e^-13	2.041e^-9	UTR_3_PRIME CG7974 DOWNSTREAM snoRNA:Me28S-A2634c & 4 others INTRON Uhg7	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_zfh1
2R	4041276	2R_4041276_SNP [dm3] 2R_8153771_SNP [dm6]	A	G	5.046e^-13	2.111e^-9	INTRON Lpin & 1 other
2R	4118364	2R_4118364_SNP [dm3] 2R_8230859_SNP [dm6]	A	T	5.194e^-13	2.168e^-9	DOWNSTREAM CR44275 INTRON dpn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16012319	3L_16012319_SNP [dm3] 3L_16019219_SNP [dm6]	A	G	5.612e^-13	2.332e^-9	UPSTREAM CR43950 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	16012418	3L_16012418_SNP [dm3] 3L_16019318_SNP [dm6]	C	T	5.612e^-13	2.332e^-9	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22577287	3R_22577287_SNP [dm3] 3R_26751565_SNP [dm6]	T	A	5.703e^-13	2.365e^-9	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23508008	3R_23508008_DEL [dm3] 3R_27682286_DEL [dm6]	AGGTTTAATTA...	A	5.806e^-13	2.402e^-9	UPSTREAM Sce INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18900782	X_18900782_INS [dm3] X_19006749_INS [dm6]	G	GAG	6.441e^-13	2.659e^-9	INTRON CG43759
X	20318815	X_20318815_SNP [dm3] X_20447788_SNP [dm6]	G	A	6.921e^-13	2.851e^-9	INTERGENIC
3R	7515446	3R_7515446_SNP [dm3] 3R_11689724_SNP [dm6]	A	C	6.965e^-13	2.863e^-9	SPLICE_SITE_DONOR CG6908 DOWNSTREAM CG18765 INTRON CG6908	TF binding site mE1_TFBS_cnc
3L	15601208	3L_15601208_SNP [dm3] 3L_15608108_SNP [dm6]	T	C	7.051e^-13	2.892e^-9	UTR_3_PRIME RhoGAP71E DOWNSTREAM CG7650
2R	12967988	2R_12967988_SNP [dm3] 2R_17080483_SNP [dm6]	C	G	7.093e^-13	2.902e^-9	INTRON CG30460
3R	16995982	3R_16995982_SNP [dm3] 3R_21170260_SNP [dm6]	G	A	7.211e^-13	2.944e^-9	INTRON SNF4Agamma
3R	3469107	3R_3469107_DEL [dm3] 3R_7643385_DEL [dm6]	AT	A	8.019e^-13	3.267e^-9	INTERGENIC	transposable element FlyBase
2L	20351481	2L_20351481_SNP [dm3] 2L_20351481_SNP [dm6]	T	G	8.989e^-13	3.654e^-9	INTRON RtGEF
3R	24381122	3R_24381122_DEL [dm3] 3R_28555400_DEL [dm6]	AACCAGG	A	9.421e^-13	3.821e^-9	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22050826	X_22050826_SNP [dm3] X_22648990_SNP [dm6]	G	T	9.705e^-13	3.928e^-9	INTERGENIC
3R	11312391	3R_11312391_SNP [dm3] 3R_15486669_SNP [dm6]	T	C	9.774e^-13	3.939e^-9	NON_SYNONYMOUS_CODING CG5205	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14104234	3R_14104234_SNP [dm3] 3R_18278512_SNP [dm6]	C	T	9.774e^-13	3.939e^-9	SYNONYMOUS_CODING CG7142 INTRON eIF-1A	TF binding site mE1_TFBS_chinmo
3R	4304642	3R_4304642_SNP [dm3] 3R_8478920_SNP [dm6]	T	G	1.018e^-12	4.094e^-9	INTERGENIC
3R	22728208	3R_22728208_SNP [dm3] 3R_26902486_SNP [dm6]	C	T	1.085e^-12	4.343e^-9	INTRON T48	regulatory region REDfly_CRMs
3R	7468015	3R_7468015_SNP [dm3] 3R_11642293_SNP [dm6]	C	A	1.085e^-12	4.343e^-9	NON_SYNONYMOUS_CODING Csk INTRON Csk
3R	17904057	3R_17904057_SNP [dm3] 3R_22078335_SNP [dm6]	A	G	1.130e^-12	4.516e^-9	UTR_3_PRIME how
X	16806561	X_16806561_SNP [dm3] X_16912528_SNP [dm6]	T	A	1.151e^-12	4.587e^-9	UPSTREAM CG4928 INTRON CR44754
3R	23508019	3R_23508019_INS [dm3] 3R_27682297_INS [dm6]	C	CACATAATGTATTTA...	1.451e^-12	5.770e^-9	UPSTREAM Sce INTERGENIC
3R	14029649	3R_14029649_SNP [dm3] 3R_18203927_SNP [dm6]	C	T	1.502e^-12	5.963e^-9	INTRON CG7985
3R	23315516	3R_23315516_SNP [dm3] 3R_27489794_SNP [dm6]	G	A	1.551e^-12	6.144e^-9	UTR_3_PRIME Gr98a
3R	11321052	3R_11321052_SNP [dm3] 3R_15495330_SNP [dm6]	T	C	1.616e^-12	6.386e^-9	SYNONYMOUS_CODING CG5213
3R	7514930	3R_7514930_SNP [dm3] 3R_11689208_SNP [dm6]	G	T	1.662e^-12	6.554e^-9	SYNONYMOUS_CODING CG6908	TF binding site BDTNP1_TFBS_z
3R	6037238	3R_6037238_SNP [dm3] 3R_10211516_SNP [dm6]	A	G	1.694e^-12	6.667e^-9	INTRON Syn & 1 other
2R	17158188	2R_17158188_SNP [dm3] 2R_21270683_SNP [dm6]	C	T	2.003e^-12	7.866e^-9	INTRON Rgk3
2L	13183028	2L_13183028_SNP [dm3] 2L_13183028_SNP [dm6]	C	T	2.038e^-12	7.986e^-9	SYNONYMOUS_CODING CG5287 UPSTREAM CG5458 & 1 other DOWNSTREAM CG16974	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	4038997	2R_4038997_SNP [dm3] 2R_8151492_SNP [dm6]	A	T	2.064e^-12	8.071e^-9	INTRON Lpin & 1 other	TF binding site mE1_TFBS_Trl
2R	4120508	2R_4120508_DEL [dm3] 2R_8233003_DEL [dm6]	AAAT	A	2.089e^-12	8.150e^-9	UPSTREAM dpn INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_run
2L	2265987	2L_2265987_SNP [dm3] 2L_2265987_SNP [dm6]	A	T	2.098e^-12	8.169e^-9	UPSTREAM CG34049 INTERGENIC
3R	14029835	3R_14029835_SNP [dm3] 3R_18204113_SNP [dm6]	A	G	2.315e^-12	8.996e^-9	INTRON CG7985
2R	4154074	2R_4154074_SNP [dm3] 2R_8266569_SNP [dm6]	C	T	2.351e^-12	9.117e^-9	SYNONYMOUS_CODING CG30375
3R	23315517	3R_23315517_SNP [dm3] 3R_27489795_SNP [dm6]	G	A	2.363e^-12	9.126e^-9	UTR_3_PRIME Gr98a
3R	23315473	3R_23315473_SNP [dm3] 3R_27489751_SNP [dm6]	T	C	2.363e^-12	9.126e^-9	UTR_3_PRIME Gr98a
2R	15886685	2R_15886685_SNP [dm3] 2R_19999180_SNP [dm6]	G	A	3.265e^-12	1.258e^-8	INTERGENIC
3R	23256638	3R_23256638_SNP [dm3] 3R_27430916_SNP [dm6]	C	T	3.601e^-12	1.371e^-8	INTRON side
3R	23257263	3R_23257263_SNP [dm3] 3R_27431541_SNP [dm6]	C	T	3.601e^-12	1.371e^-8	INTRON side
3R	23257894	3R_23257894_SNP [dm3] 3R_27432172_SNP [dm6]	A	C	3.601e^-12	1.371e^-8	INTRON side
3R	23257914	3R_23257914_SNP [dm3] 3R_27432192_SNP [dm6]	G	A	3.601e^-12	1.371e^-8	INTRON side
3R	23257966	3R_23257966_SNP [dm3] 3R_27432244_SNP [dm6]	C	G	3.601e^-12	1.371e^-8	INTRON side
3R	23258397	3R_23258397_SNP [dm3] 3R_27432675_SNP [dm6]	C	T	3.601e^-12	1.371e^-8	INTRON side
X	22041026	X_22041026_SNP [dm3] X_22639190_SNP [dm6]	G	C	4.292e^-12	1.630e^-8	INTERGENIC
2R	15886437	2R_15886437_SNP [dm3] 2R_19998932_SNP [dm6]	T	A	4.352e^-12	1.650e^-8	INTERGENIC
3R	19997556	3R_19997556_DEL [dm3] 3R_24171834_DEL [dm6]	TGTAT	T	4.565e^-12	1.727e^-8	UPSTREAM CG13606 INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	15886543	2R_15886543_SNP [dm3] 2R_19999038_SNP [dm6]	T	G	4.594e^-12	1.731e^-8	INTERGENIC
2R	15886595	2R_15886595_SNP [dm3] 2R_19999090_SNP [dm6]	A	G	4.594e^-12	1.731e^-8	INTERGENIC
3R	20130731	3R_20130731_SNP [dm3] 3R_24305009_SNP [dm6]	G	A	4.672e^-12	1.757e^-8	INTRON crb	TF binding site mE1_TFBS_cad
3R	23058827	3R_23058827_SNP [dm3] 3R_27233105_SNP [dm6]	T	A	5.303e^-12	1.990e^-8	SYNONYMOUS_CODING CG31064 UPSTREAM CG31068	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22412425	3R_22412425_SNP [dm3] 3R_26586703_SNP [dm6]	T	C	5.493e^-12	2.053e^-8	SYNONYMOUS_CODING scrib INTRON scrib	TF binding site mE1_TFBS_cad
3R	22417171	3R_22417171_SNP [dm3] 3R_26591449_SNP [dm6]	T	C	5.493e^-12	2.053e^-8	INTRON scrib
2R	15886497	2R_15886497_SNP [dm3] 2R_19998992_SNP [dm6]	T	C	5.577e^-12	2.080e^-8	INTERGENIC
2R	15886454	2R_15886454_SNP [dm3] 2R_19998949_SNP [dm6]	A	G	5.794e^-12	2.156e^-8	INTERGENIC
2R	16415283	2R_16415283_SNP [dm3] 2R_20527778_SNP [dm6]	T	A	6.163e^-12	2.289e^-8	DOWNSTREAM CG13422 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
X	22041027	X_22041027_SNP [dm3] X_22639191_SNP [dm6]	T	C	6.657e^-12	2.468e^-8	INTERGENIC
2R	19415496	2R_19415496_SNP [dm3] 2R_23527973_SNP [dm6]	G	A	6.765e^-12	2.503e^-8	UTR_3_PRIME mi & 1 other DOWNSTREAM bw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15886605	2R_15886605_SNP [dm3] 2R_19999100_SNP [dm6]	T	C	7.050e^-12	2.603e^-8	INTERGENIC
2L	10188815	2L_10188815_SNP [dm3] 2L_10188815_SNP [dm6]	C	T	7.344e^-12	2.685e^-8	SYNONYMOUS_CODING Sur
2L	2391934	2L_2391934_SNP [dm3] 2L_2391934_SNP [dm6]	T	C	7.344e^-12	2.685e^-8	UTR_5_PRIME VGlut
2L	5172791	2L_5172791_SNP [dm3] 2L_5172791_SNP [dm6]	A	C	7.344e^-12	2.685e^-8	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_sens
2L	5173151	2L_5173151_SNP [dm3] 2L_5173151_SNP [dm6]	T	C	7.344e^-12	2.685e^-8	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_sens
2L	5173153	2L_5173153_SNP [dm3] 2L_5173153_SNP [dm6]	T	C	7.344e^-12	2.685e^-8	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_sens
3R	23490827	3R_23490827_SNP [dm3] 3R_27665105_SNP [dm6]	C	A	7.434e^-12	2.712e^-8	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad
3R	7253141	3R_7253141_SNP [dm3] 3R_11427419_SNP [dm6]	A	G	7.723e^-12	2.807e^-8	SPLICE_SITE_REGION CG5270 SYNONYMOUS_CODING CG5270	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7258327	3R_7258327_SNP [dm3] 3R_11432605_SNP [dm6]	C	T	7.723e^-12	2.807e^-8	SYNONYMOUS_CODING CG5276 DOWNSTREAM CG6744	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
X	18726849	X_18726849_SNP [dm3] X_18832816_SNP [dm6]	T	A	8.316e^-12	3.016e^-8	UTR_5_PRIME Pvf1 DOWNSTREAM CG7101	TF binding site mE1_TFBS_Trl
2L	13039792	2L_13039792_SNP [dm3] 2L_13039792_SNP [dm6]	C	T	9.351e^-12	3.385e^-8	INTRON CG9932
2L	5169187	2L_5169187_SNP [dm3] 2L_5169187_SNP [dm6]	G	C	1.126e^-11	4.062e^-8	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	5169234	2L_5169234_SNP [dm3] 2L_5169234_SNP [dm6]	G	T	1.126e^-11	4.062e^-8	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	12181326	2L_12181326_SNP [dm3] 2L_12181326_SNP [dm6]	C	A	1.129e^-11	4.064e^-8	INTRON aret
2L	12721088	2L_12721088_SNP [dm3] 2L_12721088_SNP [dm6]	C	T	1.189e^-11	4.214e^-8	INTRON CG5792 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	12942735	2L_12942735_DEL [dm3] 2L_12942735_DEL [dm6]	AC	A	1.189e^-11	4.214e^-8	INTERGENIC
2L	13023137	2L_13023137_SNP [dm3] 2L_13023137_SNP [dm6]	C	A	1.189e^-11	4.214e^-8	UTR_3_PRIME CG9932
2L	2435267	2L_2435267_SNP [dm3] 2L_2435267_SNP [dm6]	A	G	1.189e^-11	4.214e^-8	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	3643483	2L_3643483_SNP [dm3] 2L_3643483_SNP [dm6]	G	T	1.189e^-11	4.214e^-8	INTRON for	TF binding site BDTNP1_TFBS_dl
2L	5168594	2L_5168594_SNP [dm3] 2L_5168594_SNP [dm6]	A	G	1.189e^-11	4.214e^-8	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	5173058	2L_5173058_SNP [dm3] 2L_5173058_SNP [dm6]	A	G	1.189e^-11	4.214e^-8	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5173101	2L_5173101_SNP [dm3] 2L_5173101_SNP [dm6]	A	G	1.189e^-11	4.214e^-8	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4592882	3L_4592882_SNP [dm3] 3L_4592882_SNP [dm6]	C	T	1.215e^-11	4.289e^-8	UTR_3_PRIME Src64B DOWNSTREAM Src64B & 1 other
X	18726813	X_18726813_SNP [dm3] X_18832780_SNP [dm6]	A	C	1.215e^-11	4.289e^-8	UTR_5_PRIME Pvf1 DOWNSTREAM CG7101	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	5208178	2L_5208178_SNP [dm3] 2L_5208178_SNP [dm6]	A	C	1.263e^-11	4.450e^-8	SYNONYMOUS_CODING Cyp28d2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2433065	2L_2433065_SNP [dm3] 2L_2433065_SNP [dm6]	A	C	1.306e^-11	4.592e^-8	INTRON dpp
2R	15725905	2R_15725905_DEL [dm3] 2R_19838400_DEL [dm6]	GCGATGG	G	1.451e^-11	5.095e^-8	INTERGENIC
2L	2436718	2L_2436718_SNP [dm3] 2L_2436718_SNP [dm6]	G	A	1.486e^-11	5.187e^-8	INTRON dpp
2L	3610050	2L_3610050_SNP [dm3] 2L_3610050_SNP [dm6]	G	C	1.486e^-11	5.187e^-8	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	5168527	2L_5168527_SNP [dm3] 2L_5168527_SNP [dm6]	G	T	1.486e^-11	5.187e^-8	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
X	17872212	X_17872212_SNP [dm3] X_17978179_SNP [dm6]	A	G	1.629e^-11	5.677e^-8	INTRON Sh
3R	14031181	3R_14031181_SNP [dm3] 3R_18205459_SNP [dm6]	G	A	1.729e^-11	6.001e^-8	INTRON CG7985
3R	14031205	3R_14031205_SNP [dm3] 3R_18205483_SNP [dm6]	A	T	1.729e^-11	6.001e^-8	INTRON CG7985
2L	5173137	2L_5173137_SNP [dm3] 2L_5173137_SNP [dm6]	G	A	1.823e^-11	6.314e^-8	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5169171	2L_5169171_SNP [dm3] 2L_5169171_SNP [dm6]	G	C	1.935e^-11	6.680e^-8	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	5169224	2L_5169224_SNP [dm3] 2L_5169224_SNP [dm6]	T	C	1.935e^-11	6.680e^-8	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	10197936	2L_10197936_SNP [dm3] 2L_10197936_SNP [dm6]	G	C	1.978e^-11	6.815e^-8	INTRON Sur	regulatory region REDfly_CRMs
2L	12942723	2L_12942723_INS [dm3] 2L_12942723_INS [dm6]	G	GA	2.049e^-11	7.046e^-8	INTERGENIC
2L	3643186	2L_3643186_SNP [dm3] 2L_3643186_SNP [dm6]	C	T	2.150e^-11	7.352e^-8	INTRON for	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	3643256	2L_3643256_SNP [dm3] 2L_3643256_SNP [dm6]	T	A	2.150e^-11	7.352e^-8	INTRON for	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	5173134	2L_5173134_SNP [dm3] 2L_5173134_SNP [dm6]	A	G	2.150e^-11	7.352e^-8	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7745579	3R_7745579_SNP [dm3] 3R_11919857_SNP [dm6]	C	A	2.158e^-11	7.366e^-8	INTRON Cad87A
2L	5209276	2L_5209276_SNP [dm3] 2L_5209276_SNP [dm6]	G	A	2.464e^-11	8.397e^-8	UTR_3_PRIME Cyp28d2
X	18409010	X_18409010_SNP [dm3] X_18514977_SNP [dm6]	A	C	2.512e^-11	8.543e^-8	UPSTREAM Aats-his & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
2R	10507503	2R_10507503_SNP [dm3] 2R_14619998_SNP [dm6]	G	A	2.714e^-11	9.212e^-8	SYNONYMOUS_CODING CG12863 DOWNSTREAM Sec61beta	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26288975	3R_26288975_SNP [dm3] 3R_30463253_SNP [dm6]	G	T	3.231e^-11	1.095e^-7	SYNONYMOUS_CODING CDase	TF binding site mE1_TFBS_chinmo
3R	26236589	3R_26236589_SNP [dm3] 3R_30410867_SNP [dm6]	A	C	3.546e^-11	1.197e^-7	INTERGENIC
3R	26236749	3R_26236749_SNP [dm3] 3R_30411027_SNP [dm6]	C	A	3.546e^-11	1.197e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	2436690	2L_2436690_SNP [dm3] 2L_2436690_SNP [dm6]	C	T	3.923e^-11	1.322e^-7	INTRON dpp
3R	11327485	3R_11327485_SNP [dm3] 3R_15501763_SNP [dm6]	T	A	4.559e^-11	1.531e^-7	INTERGENIC
3R	11328272	3R_11328272_SNP [dm3] 3R_15502550_SNP [dm6]	T	C	4.559e^-11	1.531e^-7	INTERGENIC
3R	6194617	3R_6194617_SNP [dm3] 3R_10368895_SNP [dm6]	G	C	4.734e^-11	1.587e^-7	INTRON Rfx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	22905215	3R_22905215_SNP [dm3] 3R_27079493_SNP [dm6]	C	T	5.746e^-11	1.922e^-7	INTRON CG14257	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26526456	3R_26526456_SNP [dm3] 3R_30700734_SNP [dm6]	T	A	5.936e^-11	1.983e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11090438	2L_11090438_SNP [dm3] 2L_11090438_SNP [dm6]	G	T	7.551e^-11	2.517e^-7	UTR_3_PRIME CG16854	TF binding site mE1_TFBS_cad
2R	12849960	2R_12849960_SNP [dm3] 2R_16962455_SNP [dm6]	G	A	7.661e^-11	2.518e^-7	INTERGENIC
2R	12849974	2R_12849974_SNP [dm3] 2R_16962469_SNP [dm6]	G	A	7.661e^-11	2.518e^-7	INTERGENIC
3R	14252566	3R_14252566_INS [dm3] 3R_18426844_INS [dm6]	G	GTT	7.661e^-11	2.518e^-7	FRAME_SHIFT fru DOWNSTREAM fru INTRON fru	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14252570	3R_14252570_INS [dm3] 3R_18426848_INS [dm6]	C	CT	7.661e^-11	2.518e^-7	FRAME_SHIFT fru DOWNSTREAM fru INTRON fru	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19044173	3R_19044173_SNP [dm3] 3R_23218451_SNP [dm6]	T	A	7.661e^-11	2.518e^-7	NON_SYNONYMOUS_CODING cnc INTRON cnc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23259219	3R_23259219_SNP [dm3] 3R_27433497_SNP [dm6]	A	T	7.661e^-11	2.518e^-7	INTRON side
3R	23259489	3R_23259489_SNP [dm3] 3R_27433767_SNP [dm6]	C	A	7.661e^-11	2.518e^-7	INTRON side
3R	23259866	3R_23259866_SNP [dm3] 3R_27434144_SNP [dm6]	C	T	7.661e^-11	2.518e^-7	INTRON side	TF binding site BDTNP1_TFBS_twi
3R	21438061	3R_21438061_SNP [dm3] 3R_25612339_SNP [dm6]	T	C	7.919e^-11	2.593e^-7	INTRON Npl4
3R	23305583	3R_23305583_SNP [dm3] 3R_27479861_SNP [dm6]	C	G	7.919e^-11	2.593e^-7	INTRON Cyp6a18
X	14063784	X_14063784_SNP [dm3] X_14169751_SNP [dm6]	C	T	8.240e^-11	2.694e^-7	NON_SYNONYMOUS_CODING CG12480
3R	7074220	3R_7074220_SNP [dm3] 3R_11248498_SNP [dm6]	G	A	8.272e^-11	2.699e^-7	EXON CR43283
3R	8911924	3R_8911924_SNP [dm3] 3R_13086202_SNP [dm6]	T	G	8.415e^-11	2.741e^-7	UPSTREAM CG43063 DOWNSTREAM CR44967 INTERGENIC
3R	20904968	3R_20904968_SNP [dm3] 3R_25079246_SNP [dm6]	T	A	8.834e^-11	2.873e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	26530827	3R_26530827_SNP [dm3] 3R_30705105_SNP [dm6]	C	T	8.965e^-11	2.910e^-7	UTR_3_PRIME CG31010	TF binding site mE1_TFBS_HSA
3L	3916769	3L_3916769_SNP [dm3] 3L_3916769_SNP [dm6]	T	A	9.104e^-11	2.950e^-7	INTRON Eip63F-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9808609	3L_9808609_SNP [dm3] 3L_9815509_SNP [dm6]	A	C	9.328e^-11	3.017e^-7	UPSTREAM CG43897 INTRON CG43897
3R	11328394	3R_11328394_SNP [dm3] 3R_15502672_SNP [dm6]	G	A	9.424e^-11	3.043e^-7	INTERGENIC
3R	26488210	3R_26488210_INS [dm3] 3R_30662488_INS [dm6]	T	TTT	9.605e^-11	3.096e^-7	INTERGENIC
X	3048084	X_3048084_SNP [dm3] X_3154051_SNP [dm6]	C	G	1.066e^-10	3.429e^-7	INTRON N	TF binding site BDTNP1_TFBS_da
3R	15054878	3R_15054878_SNP [dm3] 3R_19229156_SNP [dm6]	A	C	1.070e^-10	3.436e^-7	SYNONYMOUS_CODING CG5250 UPSTREAM CG11703 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	9901008	X_9901008_SNP [dm3] X_10006975_SNP [dm6]	G	A	1.084e^-10	3.476e^-7	DOWNSTREAM CG32694 INTERGENIC
3R	19898614	3R_19898614_SNP [dm3] 3R_24072892_SNP [dm6]	G	A	1.086e^-10	3.476e^-7	INTRON 4EHP
3R	23259806	3R_23259806_SNP [dm3] 3R_27434084_SNP [dm6]	C	G	1.096e^-10	3.503e^-7	INTRON side	TF binding site BDTNP1_TFBS_twi
3R	15249414	3R_15249414_SNP [dm3] 3R_19423692_SNP [dm6]	T	G	1.099e^-10	3.507e^-7	DOWNSTREAM CG3517 INTRON CG31221
3R	6933454	3R_6933454_SNP [dm3] 3R_11107732_SNP [dm6]	A	T	1.121e^-10	3.559e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6933536	3R_6933536_SNP [dm3] 3R_11107814_SNP [dm6]	T	C	1.121e^-10	3.559e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6933537	3R_6933537_SNP [dm3] 3R_11107815_SNP [dm6]	G	A	1.121e^-10	3.559e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6856190	X_6856190_SNP [dm3] X_6962157_SNP [dm6]	C	A	1.159e^-10	3.673e^-7	INTRON CG14431 & 1 other
3R	25096047	3R_25096047_SNP [dm3] 3R_29270325_SNP [dm6]	T	G	1.204e^-10	3.807e^-7	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11263951	3R_11263951_SNP [dm3] 3R_15438229_SNP [dm6]	T	A	1.218e^-10	3.846e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	26526348	3R_26526348_SNP [dm3] 3R_30700626_SNP [dm6]	C	T	1.227e^-10	3.867e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26492604	3R_26492604_SNP [dm3] 3R_30666882_SNP [dm6]	C	A	1.262e^-10	3.971e^-7	DOWNSTREAM CR45191 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	26533301	3R_26533301_SNP [dm3] 3R_30707579_SNP [dm6]	G	A	1.269e^-10	3.986e^-7	INTERGENIC
3L	19161910	3L_19161910_SNP [dm3] 3L_19168810_SNP [dm6]	A	C	1.330e^-10	4.170e^-7	INTRON fz2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26926765	3R_26926765_SNP [dm3] 3R_31101043_SNP [dm6]	G	A	1.481e^-10	4.638e^-7	NON_SYNONYMOUS_CODING CG15553
3R	18685882	3R_18685882_SNP [dm3] 3R_22860160_SNP [dm6]	C	T	1.498e^-10	4.660e^-7	INTERGENIC
3R	20124381	3R_20124381_SNP [dm3] 3R_24298659_SNP [dm6]	C	G	1.498e^-10	4.660e^-7	INTRON crb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	22558062	3R_22558062_SNP [dm3] 3R_26732340_SNP [dm6]	G	A	1.498e^-10	4.660e^-7	INTERGENIC
3R	23193581	3R_23193581_SNP [dm3] 3R_27367859_SNP [dm6]	T	G	1.498e^-10	4.660e^-7	DOWNSTREAM CR43476 INTRON CG42534 EXON CR43476	TF binding site mE1_TFBS_chinmo
3R	10364218	3R_10364218_INS [dm3] 3R_14538496_INS [dm6]	G	ATGA	1.530e^-10	4.749e^-7	INTRON Pde6
3R	18587165	3R_18587165_SNP [dm3] 3R_22761443_SNP [dm6]	T	G	1.539e^-10	4.770e^-7	UTR_3_PRIME CG4723 UPSTREAM CG4725 INTRON Usp12-46 & 1 other
3R	6933224	3R_6933224_SNP [dm3] 3R_11107502_SNP [dm6]	A	T	1.580e^-10	4.890e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	20781651	3R_20781651_SNP [dm3] 3R_24955929_SNP [dm6]	C	T	1.592e^-10	4.917e^-7	INTERGENIC
3L	15694174	3L_15694174_SNP [dm3] 3L_15701074_SNP [dm6]	G	A	1.612e^-10	4.971e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2192496	3L_2192496_SNP [dm3] 3L_2192496_SNP [dm6]	A	C	1.662e^-10	5.117e^-7	UPSTREAM CG5707 INTERGENIC
3R	25019175	3R_25019175_SNP [dm3] 3R_29193453_SNP [dm6]	G	T	1.665e^-10	5.117e^-7	INTRON CG14509
3R	7419627	3R_7419627_SNP [dm3] 3R_11593905_SNP [dm6]	C	T	1.709e^-10	5.223e^-7	INTRON Jupiter
3R	7422483	3R_7422483_SNP [dm3] 3R_11596761_SNP [dm6]	G	A	1.709e^-10	5.223e^-7	INTRON Jupiter
3R	21063096	3R_21063096_SNP [dm3] 3R_25237374_SNP [dm6]	G	A	1.712e^-10	5.223e^-7	UPSTREAM CG11852 INTERGENIC
3R	10590559	3R_10590559_SNP [dm3] 3R_14764837_SNP [dm6]	G	A	1.719e^-10	5.223e^-7	INTRON jvl
3R	19546508	3R_19546508_SNP [dm3] 3R_23720786_SNP [dm6]	T	A	1.719e^-10	5.223e^-7	SYNONYMOUS_CODING CG10232
3R	22795599	3R_22795599_MNP [dm3] 3R_26969877_MNP [dm6]	TTT	CAG	1.719e^-10	5.223e^-7	INTRON CG5521
3R	25520278	3R_25520278_SNP [dm3] 3R_29694556_SNP [dm6]	C	T	1.719e^-10	5.223e^-7	INTRON dmrt99B
3R	15878800	3R_15878800_INS [dm3] 3R_20053078_INS [dm6]	T	AAA	1.725e^-10	5.232e^-7	INTRON CG17193	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sbb
3L	10530386	3L_10530386_SNP [dm3] 3L_10537286_SNP [dm6]	T	A	1.737e^-10	5.261e^-7	INTRON A2bp1
2L	3289246	2L_3289246_SNP [dm3] 2L_3289246_SNP [dm6]	G	A	1.749e^-10	5.281e^-7	DOWNSTREAM CR44485 INTERGENIC
2L	3289258	2L_3289258_SNP [dm3] 2L_3289258_SNP [dm6]	C	T	1.749e^-10	5.281e^-7	DOWNSTREAM CR44485 INTERGENIC
3L	18014832	3L_18014832_SNP [dm3] 3L_18021732_SNP [dm6]	T	C	1.797e^-10	5.417e^-7	INTRON Eip75B	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	26524941	3R_26524941_INS [dm3] 3R_30699219_INS [dm6]	G	GA	1.876e^-10	5.645e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	7070948	3R_7070948_SNP [dm3] 3R_11245226_SNP [dm6]	A	G	1.897e^-10	5.699e^-7	SYNONYMOUS_CODING CG5214	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16095399	2R_16095399_SNP [dm3] 2R_20207894_SNP [dm6]	C	A	2.002e^-10	6.004e^-7	INTERGENIC
3R	22890011	3R_22890011_SNP [dm3] 3R_27064289_SNP [dm6]	T	A	2.084e^-10	6.230e^-7	UPSTREAM Nep5 DOWNSTREAM spz INTERGENIC
3R	25285337	3R_25285337_SNP [dm3] 3R_29459615_SNP [dm6]	C	T	2.084e^-10	6.230e^-7	UPSTREAM CR44022 INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10364153	3R_10364153_SNP [dm3] 3R_14538431_SNP [dm6]	G	A	2.127e^-10	6.349e^-7	INTRON Pde6
3R	13277735	3R_13277735_INS [dm3] 3R_17452013_INS [dm6]	C	CTAGATGGG	2.151e^-10	6.409e^-7	INTERGENIC
3R	3470351	3R_3470351_SNP [dm3] 3R_7644629_SNP [dm6]	T	C	2.163e^-10	6.436e^-7	INTERGENIC
3R	19619599	3R_19619599_SNP [dm3] 3R_23793877_SNP [dm6]	C	T	2.210e^-10	6.563e^-7	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_sens
3L	9770575	3L_9770575_SNP [dm3] 3L_9777475_SNP [dm6]	C	T	2.526e^-10	7.479e^-7	INTRON CG8177
3L	9770601	3L_9770601_SNP [dm3] 3L_9777501_SNP [dm6]	A	G	2.526e^-10	7.479e^-7	INTRON CG8177
3R	6933456	3R_6933456_SNP [dm3] 3R_11107734_SNP [dm6]	C	A	2.828e^-10	8.362e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19464524	3L_19464524_SNP [dm3] 3L_19471424_SNP [dm6]	T	C	2.954e^-10	8.720e^-7	DOWNSTREAM 825-Oak INTERGENIC
3R	20791067	3R_20791067_SNP [dm3] 3R_24965345_SNP [dm6]	G	T	3.030e^-10	8.928e^-7	INTERGENIC
3R	10241008	3R_10241008_SNP [dm3] 3R_14415286_SNP [dm6]	G	T	3.159e^-10	9.293e^-7	INTRON cv-c	TF binding site BDTNP1_TFBS_twi
2L	12135453	2L_12135453_SNP [dm3] 2L_12135453_SNP [dm6]	T	G	3.184e^-10	9.354e^-7	INTERGENIC
2L	12135545	2L_12135545_SNP [dm3] 2L_12135545_SNP [dm6]	C	T	3.201e^-10	9.387e^-7	INTERGENIC
3L	2989277	3L_2989277_SNP [dm3] 3L_2989277_SNP [dm6]	A	G	3.271e^-10	9.579e^-7	INTERGENIC
3R	22796399	3R_22796399_SNP [dm3] 3R_26970677_SNP [dm6]	G	C	3.383e^-10	9.890e^-7	SYNONYMOUS_CODING CG5521	TF binding site mE1_TFBS_cad
3R	12047750	3R_12047750_SNP [dm3] 3R_16222028_SNP [dm6]	A	G	3.402e^-10	9.914e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12047765	3R_12047765_SNP [dm3] 3R_16222043_SNP [dm6]	G	A	3.402e^-10	9.914e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21457538	X_21457538_SNP [dm3] X_21586511_SNP [dm6]	C	G	3.413e^-10	9.919e^-7	INTERGENIC
3R	9766075	3R_9766075_SNP [dm3] 3R_13940353_SNP [dm6]	A	G	3.414e^-10	9.919e^-7	INTERGENIC
X	11706021	X_11706021_SNP [dm3] X_11811988_SNP [dm6]	G	A	3.542e^-10	1.028e^-6	SYNONYMOUS_CODING CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	19052994	3R_19052994_SNP [dm3] 3R_23227272_SNP [dm6]	G	T	3.554e^-10	1.029e^-6	UPSTREAM cnc DOWNSTREAM CG4467 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	14472759	2R_14472759_SNP [dm3] 2R_18585254_SNP [dm6]	G	A	3.635e^-10	1.033e^-6	INTRON GEFmeso	TF binding site mE1_TFBS_HSA
2R	8950017	2R_8950017_SNP [dm3] 2R_13062512_SNP [dm6]	C	T	3.635e^-10	1.033e^-6	INTRON Drl-2
2R	9494213	2R_9494213_SNP [dm3] 2R_13606708_SNP [dm6]	T	C	3.635e^-10	1.033e^-6	INTERGENIC
3L	15733477	3L_15733477_SNP [dm3] 3L_15740377_SNP [dm6]	C	T	3.635e^-10	1.033e^-6	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	4021185	3L_4021185_SNP [dm3] 3L_4021185_SNP [dm6]	G	T	3.635e^-10	1.033e^-6	UTR_3_PRIME fd64A UPSTREAM Mul1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	4021188	3L_4021188_SNP [dm3] 3L_4021188_SNP [dm6]	C	G	3.635e^-10	1.033e^-6	UTR_3_PRIME fd64A UPSTREAM Mul1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	13537341	3R_13537341_SNP [dm3] 3R_17711619_SNP [dm6]	T	A	3.635e^-10	1.033e^-6	INTRON osa	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	16038100	3R_16038100_SNP [dm3] 3R_20212378_SNP [dm6]	A	T	3.635e^-10	1.033e^-6	INTRON Nlg4
3R	16038249	3R_16038249_SNP [dm3] 3R_20212527_SNP [dm6]	C	T	3.635e^-10	1.033e^-6	SYNONYMOUS_CODING Nlg4
3R	16038347	3R_16038347_SNP [dm3] 3R_20212625_SNP [dm6]	T	A	3.635e^-10	1.033e^-6	INTRON Nlg4
3R	16038406	3R_16038406_SNP [dm3] 3R_20212684_SNP [dm6]	T	A	3.635e^-10	1.033e^-6	INTRON Nlg4
X	17342973	X_17342973_SNP [dm3] X_17448940_SNP [dm6]	C	T	3.635e^-10	1.033e^-6	UPSTREAM p-cup DOWNSTREAM CG8568 INTERGENIC
3R	17353553	3R_17353553_SNP [dm3] 3R_21527831_SNP [dm6]	G	T	3.735e^-10	1.060e^-6	UTR_3_PRIME CG7956 DOWNSTREAM CG7956
3R	20791086	3R_20791086_SNP [dm3] 3R_24965364_SNP [dm6]	A	G	3.770e^-10	1.065e^-6	INTERGENIC
3R	20791089	3R_20791089_SNP [dm3] 3R_24965367_SNP [dm6]	A	G	3.770e^-10	1.065e^-6	INTERGENIC
3R	20791095	3R_20791095_SNP [dm3] 3R_24965373_SNP [dm6]	G	A	3.770e^-10	1.065e^-6	INTERGENIC
2L	12720039	2L_12720039_SNP [dm3] 2L_12720039_SNP [dm6]	T	C	3.808e^-10	1.074e^-6	INTRON CG5792 & 1 other	TF binding site mE1_TFBS_sens
2L	12720347	2L_12720347_SNP [dm3] 2L_12720347_SNP [dm6]	C	A	3.880e^-10	1.093e^-6	INTRON CG5792 & 1 other	TF binding site mE1_TFBS_cad
2R	9339005	2R_9339005_SNP [dm3] 2R_13451500_SNP [dm6]	G	A	4.041e^-10	1.135e^-6	SYNONYMOUS_CODING cbs	TF binding site mE1_TFBS_sens
2R	9339077	2R_9339077_SNP [dm3] 2R_13451572_SNP [dm6]	G	A	4.041e^-10	1.135e^-6	SYNONYMOUS_CODING cbs	TF binding site mE1_TFBS_sens
3R	18079425	3R_18079425_SNP [dm3] 3R_22253703_SNP [dm6]	T	G	4.267e^-10	1.197e^-6	INTRON SKIP
3R	23183111	3R_23183111_SNP [dm3] 3R_27357389_SNP [dm6]	T	C	4.301e^-10	1.204e^-6	INTRON CG42534	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	7512657	3R_7512657_SNP [dm3] 3R_11686935_SNP [dm6]	A	G	4.317e^-10	1.205e^-6	SYNONYMOUS_CODING CG6834
3R	7512806	3R_7512806_SNP [dm3] 3R_11687084_SNP [dm6]	A	C	4.317e^-10	1.205e^-6	NON_SYNONYMOUS_CODING CG6834
3R	21348323	3R_21348323_SNP [dm3] 3R_25522601_SNP [dm6]	T	G	4.523e^-10	1.260e^-6	INTRON msi
3R	22956355	3R_22956355_SNP [dm3] 3R_27130633_SNP [dm6]	G	A	4.531e^-10	1.260e^-6	INTRON CG6051
2L	5169342	2L_5169342_SNP [dm3] 2L_5169342_SNP [dm6]	C	T	4.535e^-10	1.260e^-6	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	23258434	3R_23258434_SNP [dm3] 3R_27432712_SNP [dm6]	G	C	4.625e^-10	1.283e^-6	INTRON side
3R	12047739	3R_12047739_SNP [dm3] 3R_16222017_SNP [dm6]	A	T	4.838e^-10	1.341e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1331771	3L_1331771_SNP [dm3] 3L_1331771_SNP [dm6]	G	A	4.966e^-10	1.370e^-6	UTR_5_PRIME msd1 DOWNSTREAM msd5 & 1 other
3L	1332091	3L_1332091_SNP [dm3] 3L_1332091_SNP [dm6]	C	T	4.966e^-10	1.370e^-6	SYNONYMOUS_CODING msd1 DOWNSTREAM msd5 & 1 other
X	3308087	X_3308087_SNP [dm3] X_3414054_SNP [dm6]	C	T	4.966e^-10	1.370e^-6	INTRON CR44999 & 1 other
3L	8593720	3L_8593720_SNP [dm3] 3L_8600620_SNP [dm6]	T	A	5.045e^-10	1.383e^-6	UPSTREAM RpL14 & 1 other INTRON Nelf-E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14472693	2R_14472693_SNP [dm3] 2R_18585188_SNP [dm6]	G	T	5.046e^-10	1.383e^-6	INTRON GEFmeso	TF binding site mE1_TFBS_HSA
2R	5051823	2R_5051823_SNP [dm3] 2R_9164318_SNP [dm6]	T	C	5.046e^-10	1.383e^-6	INTRON CG8046	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8950016	2R_8950016_SNP [dm3] 2R_13062511_SNP [dm6]	C	A	5.046e^-10	1.383e^-6	INTRON Drl-2
2R	10087666	2R_10087666_SNP [dm3] 2R_14200161_SNP [dm6]	C	G	5.071e^-10	1.388e^-6	SYNONYMOUS_CODING VGAT	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18187319	X_18187319_SNP [dm3] X_18293286_SNP [dm6]	T	A	5.161e^-10	1.411e^-6	DOWNSTREAM CR15061 INTERGENIC
3R	20791076	3R_20791076_SNP [dm3] 3R_24965354_SNP [dm6]	A	C	5.255e^-10	1.434e^-6	INTERGENIC
3R	11413336	3R_11413336_SNP [dm3] 3R_15587614_SNP [dm6]	G	T	5.375e^-10	1.463e^-6	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	23097157	3L_23097157_SNP [dm3] 3L_23104057_SNP [dm6]	C	T	5.383e^-10	1.463e^-6	DOWNSTREAM CkIIalpha INTERGENIC	transposable element FlyBase
3L	23097164	3L_23097164_SNP [dm3] 3L_23104064_SNP [dm6]	C	G	5.383e^-10	1.463e^-6	DOWNSTREAM CkIIalpha INTERGENIC	transposable element FlyBase
3R	26492573	3R_26492573_SNP [dm3] 3R_30666851_SNP [dm6]	T	G	5.485e^-10	1.489e^-6	DOWNSTREAM CR45191 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	21063002	3R_21063002_SNP [dm3] 3R_25237280_SNP [dm6]	T	C	5.503e^-10	1.491e^-6	UPSTREAM CG11852 INTERGENIC
2R	16668160	2R_16668160_SNP [dm3] 2R_20780655_SNP [dm6]	A	G	5.711e^-10	1.545e^-6	EXON CR44666	TF binding site mE1_TFBS_sens
X	14066158	X_14066158_SNP [dm3] X_14172125_SNP [dm6]	G	A	5.809e^-10	1.568e^-6	NON_SYNONYMOUS_CODING betaNACtes1 DOWNSTREAM CG12480
3R	8429166	3R_8429166_SNP [dm3] 3R_12603444_SNP [dm6]	G	T	5.812e^-10	1.568e^-6	INTERGENIC
3R	23773982	3R_23773982_SNP [dm3] 3R_27948260_SNP [dm6]	T	C	5.821e^-10	1.568e^-6	UPSTREAM Gp93 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4005256	2L_4005256_SNP [dm3] 2L_4005256_SNP [dm6]	C	T	5.966e^-10	1.605e^-6	SYNONYMOUS_CODING CG15422 UPSTREAM CG15423 DOWNSTREAM CG34176
3R	22954833	3R_22954833_SNP [dm3] 3R_27129111_SNP [dm6]	G	A	6.290e^-10	1.690e^-6	INTRON CG6051
3R	23006969	3R_23006969_SNP [dm3] 3R_27181247_SNP [dm6]	T	C	6.351e^-10	1.703e^-6	INTRON Ser	TF binding site mE1_TFBS_chinmo
3R	22989799	3R_22989799_SNP [dm3] 3R_27164077_SNP [dm6]	C	T	6.378e^-10	1.708e^-6	SYNONYMOUS_CODING ppk31 DOWNSTREAM CG34293
3L	9283050	3L_9283050_SNP [dm3] 3L_9289950_SNP [dm6]	A	G	6.520e^-10	1.744e^-6	INTERGENIC
3R	7470631	3R_7470631_SNP [dm3] 3R_11644909_SNP [dm6]	C	T	6.589e^-10	1.760e^-6	INTRON Csk
3R	23577324	3R_23577324_SNP [dm3] 3R_27751602_SNP [dm6]	T	C	6.716e^-10	1.791e^-6	INTERGENIC
3L	4559425	3L_4559425_SNP [dm3] 3L_4559425_SNP [dm6]	C	T	6.724e^-10	1.791e^-6	INTRON CG42540
3R	13587990	3R_13587990_SNP [dm3] 3R_17762268_SNP [dm6]	T	A	6.816e^-10	1.813e^-6	UTR_5_PRIME TyrR
3R	11318482	3R_11318482_SNP [dm3] 3R_15492760_SNP [dm6]	G	A	6.865e^-10	1.823e^-6	SYNONYMOUS_CODING CG5205	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4293484	3L_4293484_SNP [dm3] 3L_4293484_SNP [dm6]	C	A	6.921e^-10	1.835e^-6	DOWNSTREAM dyl & 1 other INTERGENIC
2L	4207380	2L_4207380_SNP [dm3] 2L_4207380_SNP [dm6]	A	G	7.071e^-10	1.872e^-6	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	19081028	3L_19081028_SNP [dm3] 3L_19087928_SNP [dm6]	T	C	7.462e^-10	1.973e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	5074458	2R_5074458_SNP [dm3] 2R_9186953_SNP [dm6]	A	C	7.495e^-10	1.979e^-6	UTR_3_PRIME CG8026 & 1 other UPSTREAM ltd DOWNSTREAM CG8026
3L	23116381	3L_23116381_SNP [dm3] 3L_23123281_SNP [dm6]	C	T	7.513e^-10	1.981e^-6	INTERGENIC
3R	26231858	3R_26231858_SNP [dm3] 3R_30406136_SNP [dm6]	C	T	8.164e^-10	2.150e^-6	INTERGENIC
2R	15719183	2R_15719183_SNP [dm3] 2R_19831678_SNP [dm6]	C	G	8.290e^-10	2.179e^-6	UTR_3_PRIME Toll-7
2L	5179902	2L_5179902_SNP [dm3] 2L_5179902_SNP [dm6]	T	A	8.344e^-10	2.191e^-6	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	22898098	3R_22898098_SNP [dm3] 3R_27072376_SNP [dm6]	T	G	8.696e^-10	2.280e^-6	INTERGENIC	TF binding site mE1_TFBS_cad
3R	22990104	3R_22990104_SNP [dm3] 3R_27164382_SNP [dm6]	C	T	8.818e^-10	2.309e^-6	SYNONYMOUS_CODING ppk31 DOWNSTREAM CG34293
X	4564155	X_4564155_SNP [dm3] X_4670122_SNP [dm6]	T	A	9.674e^-10	2.519e^-6	INTRON rap
X	4564173	X_4564173_SNP [dm3] X_4670140_SNP [dm6]	A	G	9.674e^-10	2.519e^-6	INTRON rap
X	4564193	X_4564193_SNP [dm3] X_4670160_SNP [dm6]	C	A	9.674e^-10	2.519e^-6	INTRON rap
X	4564196	X_4564196_MNP [dm3] X_4670163_MNP [dm6]	GTC	ACA	9.674e^-10	2.519e^-6	INTRON rap
3L	6825233	3L_6825233_INS [dm3] 3L_6832133_INS [dm6]	G	GTTTTACTGTG...	9.870e^-10	2.566e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5179977	2L_5179977_SNP [dm3] 2L_5179977_SNP [dm6]	C	T	1.066e^-9	2.768e^-6	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
X	16231632	X_16231632_SNP [dm3] X_16337599_SNP [dm6]	G	C	1.070e^-9	2.773e^-6	INTRON Dsp1	TF binding site mE1_TFBS_cad
X	16808615	X_16808615_SNP [dm3] X_16914582_SNP [dm6]	T	A	1.094e^-9	2.832e^-6	INTRON CG4928
3R	25408077	3R_25408077_DEL [dm3] 3R_29582355_DEL [dm6]	TCCCATTTT	T	1.224e^-9	3.165e^-6	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	7081222	2L_7081222_INS [dm3] 2L_7081222_INS [dm6]	T	TT	1.241e^-9	3.203e^-6	INTRON Pvf2
2R	10492425	2R_10492425_SNP [dm3] 2R_14604920_SNP [dm6]	G	A	1.276e^-9	3.281e^-6	SYNONYMOUS_CODING CG12868 UPSTREAM tra2 DOWNSTREAM CG33469	TF binding site mE1_TFBS_HSA
2R	10497679	2R_10497679_SNP [dm3] 2R_14610174_SNP [dm6]	G	A	1.276e^-9	3.281e^-6	NON_SYNONYMOUS_CODING Su_var_2-HP2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10500446	2R_10500446_SNP [dm3] 2R_14612941_SNP [dm6]	T	A	1.276e^-9	3.281e^-6	NON_SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_sens
2R	17740023	2R_17740023_SNP [dm3] 2R_21852518_SNP [dm6]	C	A	1.371e^-9	3.519e^-6	INTERGENIC	TF binding site mE1_TFBS_cad
3R	16111698	3R_16111698_SNP [dm3] 3R_20285976_SNP [dm6]	G	T	1.373e^-9	3.519e^-6	INTRON cic
3L	20886771	3L_20886771_SNP [dm3] 3L_20893671_SNP [dm6]	A	T	1.410e^-9	3.611e^-6	INTERGENIC
2R	13121762	2R_13121762_SNP [dm3] 2R_17234257_SNP [dm6]	T	G	1.700e^-9	4.346e^-6	INTRON mbl
3R	13688082	3R_13688082_SNP [dm3] 3R_17862360_SNP [dm6]	G	A	1.726e^-9	4.406e^-6	INTRON tinc
2R	9116238	2R_9116238_SNP [dm3] 2R_13228733_SNP [dm6]	C	A	1.794e^-9	4.574e^-6	SYNONYMOUS_CODING Pex13 DOWNSTREAM Dp	TF binding site mE1_TFBS_cad
3R	9144822	3R_9144822_SNP [dm3] 3R_13319100_SNP [dm6]	A	G	1.882e^-9	4.792e^-6	SYNONYMOUS_CODING CG45080
2R	9337475	2R_9337475_SNP [dm3] 2R_13449970_SNP [dm6]	T	A	1.893e^-9	4.813e^-6	UPSTREAM cnn & 1 other INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
3R	20913305	3R_20913305_INS [dm3] 3R_25087583_INS [dm6]	A	AATGTTTAGGC...	2.080e^-9	5.281e^-6	INTERGENIC	transposable element FlyBase
X	4918383	X_4918383_SNP [dm3] X_5024350_SNP [dm6]	A	G	2.098e^-9	5.320e^-6	INTRON CR44833	regulatory region REDfly_CRMs
2R	16931990	2R_16931990_SNP [dm3] 2R_21044485_SNP [dm6]	G	A	2.134e^-9	5.390e^-6	INTERGENIC
2R	16931992	2R_16931992_SNP [dm3] 2R_21044487_SNP [dm6]	C	A	2.134e^-9	5.390e^-6	INTERGENIC
3L	11449982	3L_11449982_SNP [dm3] 3L_11456882_SNP [dm6]	A	T	2.134e^-9	5.390e^-6	DOWNSTREAM CG12289 INTERGENIC
2R	17841647	2R_17841647_DEL [dm3] 2R_21954142_DEL [dm6]	TT	T	2.152e^-9	5.427e^-6	UPSTREAM CR43405 DOWNSTREAM CG13494 INTERGENIC
3R	17891230	3R_17891230_SNP [dm3] 3R_22065508_SNP [dm6]	A	T	2.394e^-9	6.030e^-6	INTRON how
3R	23315488	3R_23315488_SNP [dm3] 3R_27489766_SNP [dm6]	G	T	2.647e^-9	6.657e^-6	UTR_3_PRIME Gr98a
3R	6050947	3R_6050947_SNP [dm3] 3R_10225225_SNP [dm6]	T	C	3.161e^-9	7.940e^-6	SYNONYMOUS_CODING CG34107 UPSTREAM CG42795 & 1 other
3L	10852664	3L_10852664_SNP [dm3] 3L_10859564_SNP [dm6]	G	T	3.179e^-9	7.973e^-6	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_kn
3R	17891231	3R_17891231_SNP [dm3] 3R_22065509_SNP [dm6]	C	T	3.229e^-9	8.083e^-6	INTRON how
X	20316681	X_20316681_SNP [dm3] X_20445654_SNP [dm6]	C	T	3.233e^-9	8.083e^-6	UPSTREAM CG42578 DOWNSTREAM CG1695 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	1668525	3L_1668525_SNP [dm3] 3L_1668525_SNP [dm6]	C	A	3.236e^-9	8.083e^-6	DOWNSTREAM RabX5 INTRON RpL23A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13136282	2R_13136282_SNP [dm3] 2R_17248777_SNP [dm6]	T	A	3.339e^-9	8.330e^-6	INTRON mbl
X	5234799	X_5234799_SNP [dm3] X_5340766_SNP [dm6]	A	G	3.447e^-9	8.576e^-6	INTRON SK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19643309	2R_19643309_SNP [dm3] 2R_23755786_SNP [dm6]	T	G	3.452e^-9	8.576e^-6	NON_SYNONYMOUS_CODING CG9850 INTRON CG9850
2R	8350945	2R_8350945_SNP [dm3] 2R_12463440_SNP [dm6]	C	A	3.452e^-9	8.576e^-6	INTRON Lac	TF binding site BDTNP1_TFBS_dl
2R	12295902	2R_12295902_SNP [dm3] 2R_16408397_SNP [dm6]	G	A	3.491e^-9	8.663e^-6	INTRON Sema-2b
3L	3928598	3L_3928598_SNP [dm3] 3L_3928598_SNP [dm6]	A	C	3.678e^-9	9.114e^-6	INTRON Eip63F-1
3L	11309030	3L_11309030_SNP [dm3] 3L_11315930_SNP [dm6]	C	A	3.742e^-9	9.260e^-6	EXON CR44361	TF binding site BDTNP1_TFBS_twi
3R	9471042	3R_9471042_INS [dm3] 3R_13645320_INS [dm6]	A	AA	3.756e^-9	9.283e^-6	INTRON sqd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	11451600	3L_11451600_SNP [dm3] 3L_11458500_SNP [dm6]	C	A	3.781e^-9	9.321e^-6	UTR_5_PRIME CG7551 UPSTREAM CG12289
3L	11451603	3L_11451603_SNP [dm3] 3L_11458503_SNP [dm6]	C	G	3.781e^-9	9.321e^-6	UTR_5_PRIME CG7551 UPSTREAM CG12289
3L	17374233	3L_17374233_SNP [dm3] 3L_17381133_SNP [dm6]	C	T	3.846e^-9	9.466e^-6	SYNONYMOUS_CODING CG13728	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
X	16397722	X_16397722_SNP [dm3] X_16503689_SNP [dm6]	G	C	3.877e^-9	9.518e^-6	INTRON para
X	16397771	X_16397771_SNP [dm3] X_16503738_SNP [dm6]	A	C	3.877e^-9	9.518e^-6	INTRON para
3L	13987579	3L_13987579_SNP [dm3] 3L_13994479_SNP [dm6]	C	A	3.900e^-9	9.562e^-6	INTRON 26-29-p	TF binding site mE1_TFBS_inv
3L	9398761	3L_9398761_SNP [dm3] 3L_9405661_SNP [dm6]	C	A	4.015e^-9	9.830e^-6	SYNONYMOUS_CODING Cpr67B DOWNSTREAM CG4022	TF binding site mE1_TFBS_sens
2L	9988599	2L_9988599_SNP [dm3] 2L_9988599_SNP [dm6]	A	G	4.073e^-9	9.959e^-6	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	543578	3L_543578_SNP [dm3] 3L_543578_SNP [dm6]	T	C	4.121e^-9	1.006e^-5	UPSTREAM Cypl INTRON hipk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	15873604	2R_15873604_SNP [dm3] 2R_19986099_SNP [dm6]	C	A	4.193e^-9	1.023e^-5	INTERGENIC
3R	14059246	3R_14059246_SNP [dm3] 3R_18233524_SNP [dm6]	A	G	4.268e^-9	1.040e^-5	INTERGENIC	regulatory region REDfly_CRMs
3R	21470542	3R_21470542_SNP [dm3] 3R_25644820_SNP [dm6]	A	T	4.302e^-9	1.047e^-5	INTRON jigr1
2L	9611692	2L_9611692_SNP [dm3] 2L_9611692_SNP [dm6]	G	C	4.450e^-9	1.081e^-5	NON_SYNONYMOUS_CODING gcm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15974286	2R_15974286_SNP [dm3] 2R_20086781_SNP [dm6]	A	T	4.463e^-9	1.083e^-5	DOWNSTREAM CR44632 INTERGENIC
3L	11308843	3L_11308843_SNP [dm3] 3L_11315743_SNP [dm6]	C	G	4.519e^-9	1.095e^-5	EXON CR44361
2R	19645045	2R_19645045_SNP [dm3] 2R_23757522_SNP [dm6]	G	A	4.707e^-9	1.139e^-5	INTRON CG9850
2R	10720133	2R_10720133_INS [dm3] 2R_14832628_INS [dm6]	C	CTTGAACTGC	4.757e^-9	1.150e^-5	UPSTREAM CG10205 INTERGENIC
X	12588611	X_12588611_SNP [dm3] X_12694578_SNP [dm6]	A	C	4.876e^-9	1.177e^-5	INTRON Smr	TF binding site mE1_TFBS_inv
3R	22957702	3R_22957702_SNP [dm3] 3R_27131980_SNP [dm6]	T	A	4.886e^-9	1.178e^-5	INTRON CG6051	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8967993	3R_8967993_SNP [dm3] 3R_13142271_SNP [dm6]	C	G	4.930e^-9	1.187e^-5	INTRON timeout & 2 others
2R	10453193	2R_10453193_SNP [dm3] 2R_14565688_SNP [dm6]	G	A	5.105e^-9	1.221e^-5	INTRON ttv
2R	15856323	2R_15856323_SNP [dm3] 2R_19968818_SNP [dm6]	G	T	5.105e^-9	1.221e^-5	INTERGENIC
3L	5013108	3L_5013108_SNP [dm3] 3L_5013108_SNP [dm6]	C	G	5.105e^-9	1.221e^-5	UPSTREAM CG12027 INTRON Con
3L	6741617	3L_6741617_SNP [dm3] 3L_6748517_SNP [dm6]	C	T	5.105e^-9	1.221e^-5	SYNONYMOUS_CODING velo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	22042158	X_22042158_SNP [dm3] X_22640322_SNP [dm6]	G	A	5.105e^-9	1.221e^-5	INTERGENIC	transposable element FlyBase
3L	9004959	3L_9004959_SNP [dm3] 3L_9011859_SNP [dm6]	T	A	5.224e^-9	1.246e^-5	DOWNSTREAM Doc2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
3L	9004962	3L_9004962_SNP [dm3] 3L_9011862_SNP [dm6]	G	A	5.224e^-9	1.246e^-5	DOWNSTREAM Doc2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
3L	8770642	3L_8770642_SNP [dm3] 3L_8777542_SNP [dm6]	T	G	5.243e^-9	1.249e^-5	INTRON Fhos
3L	19472157	3L_19472157_SNP [dm3] 3L_19479057_SNP [dm6]	A	G	5.451e^-9	1.297e^-5	UPSTREAM CR32207 DOWNSTREAM CR42842 INTERGENIC
3L	17112070	3L_17112070_INS [dm3] 3L_17118970_INS [dm6]	A	ATGCAGGA	5.471e^-9	1.300e^-5	INTRON Rbp6
2R	3690989	2R_3690989_SNP [dm3] 2R_7803484_SNP [dm6]	A	C	5.498e^-9	1.305e^-5	INTRON Nop17l	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
X	16808132	X_16808132_INS [dm3] X_16914099_INS [dm6]	A	AC	5.551e^-9	1.316e^-5	UTR_5_PRIME CG4928	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16212083	2R_16212083_SNP [dm3] 2R_20324578_SNP [dm6]	C	G	5.746e^-9	1.360e^-5	UTR_3_PRIME CG8920 INTRON CG8920	TF binding site mE1_TFBS_cad
2L	6027008	2L_6027008_SNP [dm3] 2L_6027008_SNP [dm6]	T	A	5.873e^-9	1.383e^-5	INTRON CG9109
3L	4529850	3L_4529850_SNP [dm3] 3L_4529850_SNP [dm6]	T	C	5.880e^-9	1.383e^-5	INTRON Tie	TF binding site mE1_TFBS_inv
3L	11309006	3L_11309006_SNP [dm3] 3L_11315906_SNP [dm6]	G	A	5.884e^-9	1.383e^-5	EXON CR44361	TF binding site BDTNP1_TFBS_twi
3L	11309007	3L_11309007_SNP [dm3] 3L_11315907_SNP [dm6]	A	T	5.884e^-9	1.383e^-5	EXON CR44361	TF binding site BDTNP1_TFBS_twi
3L	11309013	3L_11309013_SNP [dm3] 3L_11315913_SNP [dm6]	T	G	5.884e^-9	1.383e^-5	EXON CR44361	TF binding site BDTNP1_TFBS_twi
2L	8503627	2L_8503627_SNP [dm3] 2L_8503627_SNP [dm6]	A	G	5.887e^-9	1.383e^-5	INTRON Dh31
2R	3725565	2R_3725565_SNP [dm3] 2R_7838060_SNP [dm6]	G	C	6.079e^-9	1.426e^-5	INTRON Dgk	TF binding site mE1_TFBS_chinmo
X	8756404	X_8756404_SNP [dm3] X_8862371_SNP [dm6]	T	C	6.115e^-9	1.431e^-5	INTRON CG12075	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	14082559	3L_14082559_SNP [dm3] 3L_14089459_SNP [dm6]	C	T	6.121e^-9	1.431e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20246622	X_20246622_SNP [dm3] X_20375595_SNP [dm6]	A	G	6.121e^-9	1.431e^-5	DOWNSTREAM CG12679 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10357499	3L_10357499_SNP [dm3] 3L_10364399_SNP [dm6]	G	A	6.158e^-9	1.438e^-5	UPSTREAM CR44327 & 1 other EXON CR44327	TF binding site BDTNP1_TFBS_dl
2R	19378454	2R_19378454_SNP [dm3] 2R_23490931_SNP [dm6]	A	G	6.294e^-9	1.467e^-5	UTR_3_PRIME CG43795
2R	6166563	2R_6166563_SNP [dm3] 2R_10279058_SNP [dm6]	T	C	6.418e^-9	1.494e^-5	UTR_5_PRIME CAP INTRON CAP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15856228	2R_15856228_SNP [dm3] 2R_19968723_SNP [dm6]	T	G	6.476e^-9	1.506e^-5	INTERGENIC
2R	6958633	2R_6958633_SNP [dm3] 2R_11071128_SNP [dm6]	A	T	6.562e^-9	1.524e^-5	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2475126	3L_2475126_SNP [dm3] 3L_2475126_SNP [dm6]	A	G	6.631e^-9	1.538e^-5	INTRON CG45186 & 1 other
3R	26231151	3R_26231151_SNP [dm3] 3R_30405429_SNP [dm6]	G	A	6.648e^-9	1.540e^-5	DOWNSTREAM CR45570 INTERGENIC
2R	3825385	2R_3825385_SNP [dm3] 2R_7937880_SNP [dm6]	C	T	6.706e^-9	1.544e^-5	NON_SYNONYMOUS_CODING CG8728	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8135443	2R_8135443_SNP [dm3] 2R_12247938_SNP [dm6]	A	G	6.706e^-9	1.544e^-5	UPSTREAM CR44315 INTERGENIC
2R	14271765	2R_14271765_SNP [dm3] 2R_18384260_SNP [dm6]	C	A	6.724e^-9	1.544e^-5	UTR_3_PRIME IM1 UPSTREAM CG18107 DOWNSTREAM CG15067
2R	14271767	2R_14271767_SNP [dm3] 2R_18384262_SNP [dm6]	T	A	6.724e^-9	1.544e^-5	UTR_3_PRIME IM1 UPSTREAM CG18107 DOWNSTREAM CG15067
2R	15895597	2R_15895597_SNP [dm3] 2R_20008092_SNP [dm6]	T	A	6.724e^-9	1.544e^-5	DOWNSTREAM CR44628 INTERGENIC
2R	15901372	2R_15901372_SNP [dm3] 2R_20013867_SNP [dm6]	A	T	6.724e^-9	1.544e^-5	UPSTREAM CR44629 INTERGENIC
2R	15901389	2R_15901389_SNP [dm3] 2R_20013884_SNP [dm6]	T	A	6.724e^-9	1.544e^-5	UPSTREAM CR44629 INTERGENIC
3R	26236154	3R_26236154_SNP [dm3] 3R_30410432_SNP [dm6]	T	G	6.749e^-9	1.548e^-5	INTERGENIC
3R	14027170	3R_14027170_SNP [dm3] 3R_18201448_SNP [dm6]	T	A	6.755e^-9	1.548e^-5	INTRON CG7985
2R	14272069	2R_14272069_SNP [dm3] 2R_18384564_SNP [dm6]	A	C	6.788e^-9	1.548e^-5	UPSTREAM CG18107 DOWNSTREAM CG15067 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14272366	2R_14272366_SNP [dm3] 2R_18384861_SNP [dm6]	T	A	6.788e^-9	1.548e^-5	UTR_3_PRIME CG15067 & 1 other DOWNSTREAM CG15067 & 1 other
2R	14272373	2R_14272373_SNP [dm3] 2R_18384868_SNP [dm6]	T	A	6.788e^-9	1.548e^-5	UTR_3_PRIME CG15067 & 1 other DOWNSTREAM CG15067 & 1 other
2R	14273187	2R_14273187_SNP [dm3] 2R_18385682_SNP [dm6]	A	C	6.788e^-9	1.548e^-5	UPSTREAM CG15067 & 1 other DOWNSTREAM CG18107 INTERGENIC	TF binding site mE1_TFBS_cad
3L	17356380	3L_17356380_SNP [dm3] 3L_17363280_SNP [dm6]	G	A	6.829e^-9	1.555e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
3L	8805477	3L_8805477_SNP [dm3] 3L_8812377_SNP [dm6]	G	A	7.020e^-9	1.596e^-5	INTERGENIC
2L	4551957	2L_4551957_SNP [dm3] 2L_4551957_SNP [dm6]	C	G	7.277e^-9	1.653e^-5	INTRON dp
2R	4122866	2R_4122866_SNP [dm3] 2R_8235361_SNP [dm6]	C	A	7.591e^-9	1.722e^-5	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6036856	3R_6036856_SNP [dm3] 3R_10211134_SNP [dm6]	T	G	7.668e^-9	1.738e^-5	INTRON Syn & 1 other
3R	10888318	3R_10888318_SNP [dm3] 3R_15062596_SNP [dm6]	A	G	7.697e^-9	1.739e^-5	INTRON dpr9
2R	7457624	2R_7457624_SNP [dm3] 2R_11570119_SNP [dm6]	T	A	7.702e^-9	1.739e^-5	INTERGENIC
3L	18308287	3L_18308287_SNP [dm3] 3L_18315187_SNP [dm6]	A	G	7.702e^-9	1.739e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14154456	X_14154456_INS [dm3] X_14260423_INS [dm6]	A	AA	7.781e^-9	1.755e^-5	UPSTREAM CG1461 INTERGENIC
2L	17503613	2L_17503613_SNP [dm3] 2L_17503613_SNP [dm6]	A	G	7.814e^-9	1.760e^-5	INTRON Dhc36C
3R	26216402	3R_26216402_SNP [dm3] 3R_30390680_SNP [dm6]	G	A	7.949e^-9	1.788e^-5	DOWNSTREAM Fer2LCH INTERGENIC	TF binding site mE1_TFBS_Trl
X	12619053	X_12619053_SNP [dm3] X_12725020_SNP [dm6]	A	T	7.977e^-9	1.792e^-5	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	18584769	3R_18584769_SNP [dm3] 3R_22759047_SNP [dm6]	T	A	8.027e^-9	1.799e^-5	SYNONYMOUS_CODING CG4725 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18584775	3R_18584775_SNP [dm3] 3R_22759053_SNP [dm6]	G	C	8.027e^-9	1.799e^-5	SYNONYMOUS_CODING CG4725 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10954866	3L_10954866_SNP [dm3] 3L_10961766_SNP [dm6]	C	G	8.142e^-9	1.820e^-5	EXON CR45249
3L	3916961	3L_3916961_SNP [dm3] 3L_3916961_SNP [dm6]	T	G	8.142e^-9	1.820e^-5	INTRON Eip63F-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12663958	3R_12663958_SNP [dm3] 3R_16838236_SNP [dm6]	A	T	8.152e^-9	1.821e^-5	INTRON iab-8	TF binding site mE1_TFBS_cad
2R	12637185	2R_12637185_SNP [dm3] 2R_16749680_SNP [dm6]	G	A	8.253e^-9	1.841e^-5	UPSTREAM Acp53C14b DOWNSTREAM Acp53Ea INTERGENIC
3R	17891190	3R_17891190_SNP [dm3] 3R_22065468_SNP [dm6]	A	C	8.277e^-9	1.844e^-5	INTRON how
X	20246982	X_20246982_SNP [dm3] X_20375955_SNP [dm6]	C	T	8.349e^-9	1.858e^-5	SYNONYMOUS_CODING CG12679	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	18922656	2L_18922656_DEL [dm3] 2L_18922656_DEL [dm6]	TGTGTCCTT	T	8.534e^-9	1.881e^-5	INTRON ssp3
3R	10890705	3R_10890705_SNP [dm3] 3R_15064983_SNP [dm6]	C	T	8.543e^-9	1.881e^-5	INTRON dpr9
3R	11804691	3R_11804691_SNP [dm3] 3R_15978969_SNP [dm6]	C	T	8.543e^-9	1.881e^-5	SYNONYMOUS_CODING Hel89B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11804784	3R_11804784_SNP [dm3] 3R_15979062_SNP [dm6]	G	A	8.543e^-9	1.881e^-5	SYNONYMOUS_CODING Hel89B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11804817	3R_11804817_SNP [dm3] 3R_15979095_SNP [dm6]	A	G	8.543e^-9	1.881e^-5	SYNONYMOUS_CODING Hel89B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11804820	3R_11804820_SNP [dm3] 3R_15979098_SNP [dm6]	A	G	8.543e^-9	1.881e^-5	SYNONYMOUS_CODING Hel89B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11805042	3R_11805042_SNP [dm3] 3R_15979320_SNP [dm6]	G	A	8.543e^-9	1.881e^-5	SYNONYMOUS_CODING Hel89B	TF binding site mE1_TFBS_cad
3R	14270028	3R_14270028_SNP [dm3] 3R_18444306_SNP [dm6]	T	C	8.543e^-9	1.881e^-5	INTRON fru
3R	25790809	3R_25790809_SNP [dm3] 3R_29965087_SNP [dm6]	C	A	8.543e^-9	1.881e^-5	INTRON TkR99D
2R	11318012	2R_11318012_SNP [dm3] 2R_15430507_SNP [dm6]	C	T	8.633e^-9	1.898e^-5	INTRON CG43729
3L	7688096	3L_7688096_SNP [dm3] 3L_7694996_SNP [dm6]	G	T	8.735e^-9	1.914e^-5	INTRON CG32373 & 2 others
2R	15873184	2R_15873184_SNP [dm3] 2R_19985679_SNP [dm6]	C	G	8.735e^-9	1.914e^-5	DOWNSTREAM CG8654 INTERGENIC
2R	15873549	2R_15873549_DEL [dm3] 2R_19986044_DEL [dm6]	AAGGGCCGCGGAAATGACTC...	A	8.735e^-9	1.914e^-5	INTERGENIC
2R	8135441	2R_8135441_INS [dm3] 2R_12247936_INS [dm6]	A	ATGGAAGTTTTGGGCGGTTT...	8.802e^-9	1.926e^-5	UPSTREAM CR44315 INTERGENIC
2R	4041796	2R_4041796_SNP [dm3] 2R_8154291_SNP [dm6]	G	A	8.816e^-9	1.927e^-5	INTRON Lpin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	23008031	3R_23008031_SNP [dm3] 3R_27182309_SNP [dm6]	T	A	8.858e^-9	1.934e^-5	INTRON Ser
X	5641867	X_5641867_SNP [dm3] X_5747834_SNP [dm6]	C	A	8.900e^-9	1.941e^-5	UTR_5_PRIME CG4078 UPSTREAM IntS6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	6456220	X_6456220_SNP [dm3] X_6562187_SNP [dm6]	T	A	8.927e^-9	1.942e^-5	INTRON CG34417	TF binding site BDTNP1_TFBS_dl
X	7961572	X_7961572_SNP [dm3] X_8067539_SNP [dm6]	A	G	8.927e^-9	1.942e^-5	INTRON mys	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14273827	2R_14273827_SNP [dm3] 2R_18386322_SNP [dm6]	C	A	9.039e^-9	1.964e^-5	UPSTREAM CG15067 & 1 other INTERGENIC
3R	7524523	3R_7524523_SNP [dm3] 3R_11698801_SNP [dm6]	T	G	9.057e^-9	1.966e^-5	DOWNSTREAM CG14717 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
X	10902948	X_10902948_INS [dm3] X_11008915_INS [dm6]	T	TA	9.078e^-9	1.968e^-5	INTRON CG42339
2R	4041975	2R_4041975_SNP [dm3] 2R_8154470_SNP [dm6]	C	T	9.250e^-9	2.001e^-5	INTRON Lpin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	4042106	2R_4042106_SNP [dm3] 2R_8154601_SNP [dm6]	A	C	9.250e^-9	2.001e^-5	INTRON Lpin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	17609797	3L_17609797_SNP [dm3] 3L_17616697_SNP [dm6]	G	C	9.827e^-9	2.113e^-5	INTRON Eip74EF
X	16808382	X_16808382_SNP [dm3] X_16914349_SNP [dm6]	A	G	9.827e^-9	2.113e^-5	INTRON CG4928	TF binding site mE1_TFBS_HSA
X	2574533	X_2574533_SNP [dm3] X_2680500_SNP [dm6]	A	G	9.827e^-9	2.113e^-5	SYNONYMOUS_CODING HLH3B DOWNSTREAM sgg	TF binding site mE1_TFBS_chinmo
X	2661846	X_2661846_SNP [dm3] X_2767813_SNP [dm6]	A	G	9.827e^-9	2.113e^-5	INTRON kirre
X	2661847	X_2661847_SNP [dm3] X_2767814_SNP [dm6]	T	A	9.827e^-9	2.113e^-5	INTRON kirre
X	4784911	X_4784911_SNP [dm3] X_4890878_SNP [dm6]	T	G	9.873e^-9	2.121e^-5	INTRON CG42594
X	18726856	X_18726856_SNP [dm3] X_18832823_SNP [dm6]	A	C	1.012e^-8	2.172e^-5	UTR_5_PRIME Pvf1 DOWNSTREAM CG7101	TF binding site mE1_TFBS_Trl
3L	12963611	3L_12963611_SNP [dm3] 3L_12970511_SNP [dm6]	G	A	1.016e^-8	2.177e^-5	DOWNSTREAM CG10748 INTERGENIC
3R	15660265	3R_15660265_SNP [dm3] 3R_19834543_SNP [dm6]	C	T	1.018e^-8	2.179e^-5	INTRON bnl
2R	9339317	2R_9339317_SNP [dm3] 2R_13451812_SNP [dm6]	C	T	1.031e^-8	2.203e^-5	SYNONYMOUS_CODING cbs	TF binding site mE1_TFBS_sens
2L	6396494	2L_6396494_SNP [dm3] 2L_6396494_SNP [dm6]	G	T	1.050e^-8	2.222e^-5	SYNONYMOUS_CODING CG42369 INTRON CG42368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12047543	3L_12047543_SNP [dm3] 3L_12054443_SNP [dm6]	G	T	1.050e^-8	2.222e^-5	INTRON rols
2L	10477559	2L_10477559_SNP [dm3] 2L_10477559_SNP [dm6]	G	A	1.052e^-8	2.222e^-5	SYNONYMOUS_CODING RluA-2	TF binding site mE1_TFBS_ttk
X	16723326	X_16723326_SNP [dm3] X_16829293_SNP [dm6]	T	C	1.053e^-8	2.222e^-5	INTRON CG13004
3L	16012366	3L_16012366_DEL [dm3] 3L_16019266_DEL [dm6]	TTTATTG	T	1.058e^-8	2.222e^-5	UPSTREAM CR43950 INTERGENIC	insulator Insulator_Class_II.mE01 silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	16012376	3L_16012376_SNP [dm3] 3L_16019276_SNP [dm6]	G	A	1.058e^-8	2.222e^-5	UPSTREAM CR43950 INTERGENIC	insulator Insulator_Class_II.mE01 silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	16012401	3L_16012401_SNP [dm3] 3L_16019301_SNP [dm6]	A	G	1.058e^-8	2.222e^-5	UPSTREAM CR43950 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16012404	3L_16012404_SNP [dm3] 3L_16019304_SNP [dm6]	A	G	1.058e^-8	2.222e^-5	UPSTREAM CR43950 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15876540	2R_15876540_SNP [dm3] 2R_19989035_SNP [dm6]	A	C	1.058e^-8	2.222e^-5	INTERGENIC
3L	12127938	3L_12127938_SNP [dm3] 3L_12134838_SNP [dm6]	T	C	1.058e^-8	2.222e^-5	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12128115	3L_12128115_SNP [dm3] 3L_12135015_SNP [dm6]	C	T	1.058e^-8	2.222e^-5	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad
3L	12128142	3L_12128142_SNP [dm3] 3L_12135042_SNP [dm6]	G	A	1.058e^-8	2.222e^-5	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad
3L	12128415	3L_12128415_SNP [dm3] 3L_12135315_SNP [dm6]	C	T	1.058e^-8	2.222e^-5	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12128439	3L_12128439_SNP [dm3] 3L_12135339_SNP [dm6]	G	C	1.058e^-8	2.222e^-5	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14277181	3L_14277181_SNP [dm3] 3L_14284081_SNP [dm6]	C	T	1.058e^-8	2.222e^-5	INTRON fz
X	4579758	X_4579758_SNP [dm3] X_4685725_SNP [dm6]	G	C	1.058e^-8	2.222e^-5	SYNONYMOUS_CODING Pp2C1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6021648	3R_6021648_SNP [dm3] 3R_10195926_SNP [dm6]	C	T	1.067e^-8	2.237e^-5	SYNONYMOUS_CODING Syn
X	18021384	X_18021384_SNP [dm3] X_18127351_SNP [dm6]	G	A	1.071e^-8	2.244e^-5	UPSTREAM CG32553 & 1 other INTERGENIC
3L	12834117	3L_12834117_SNP [dm3] 3L_12841017_SNP [dm6]	G	A	1.101e^-8	2.298e^-5	INTRON CG10960	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	8912176	3R_8912176_SNP [dm3] 3R_13086454_SNP [dm6]	A	G	1.101e^-8	2.298e^-5	SYNONYMOUS_CODING CG43063 DOWNSTREAM CR44967
3R	8912527	3R_8912527_SNP [dm3] 3R_13086805_SNP [dm6]	T	C	1.101e^-8	2.298e^-5	DOWNSTREAM CR44967 & 1 other INTERGENIC
3R	18584790	3R_18584790_SNP [dm3] 3R_22759068_SNP [dm6]	T	C	1.103e^-8	2.299e^-5	SYNONYMOUS_CODING CG4725 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11308997	3L_11308997_SNP [dm3] 3L_11315897_SNP [dm6]	T	A	1.119e^-8	2.331e^-5	EXON CR44361	TF binding site BDTNP1_TFBS_twi
2R	13784821	2R_13784821_SNP [dm3] 2R_17897316_SNP [dm6]	A	G	1.137e^-8	2.357e^-5	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17372246	3L_17372246_SNP [dm3] 3L_17379146_SNP [dm6]	A	G	1.138e^-8	2.357e^-5	DOWNSTREAM CG13728 INTRON Cad74A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14271277	2R_14271277_SNP [dm3] 2R_18383772_SNP [dm6]	A	T	1.139e^-8	2.357e^-5	UPSTREAM IM1 & 2 others INTERGENIC
3R	19321297	3R_19321297_SNP [dm3] 3R_23495575_SNP [dm6]	A	G	1.139e^-8	2.357e^-5	INTERGENIC
3R	21379847	3R_21379847_SNP [dm3] 3R_25554125_SNP [dm6]	A	T	1.139e^-8	2.357e^-5	INTRON msi
3R	21391213	3R_21391213_SNP [dm3] 3R_25565491_SNP [dm6]	C	A	1.139e^-8	2.357e^-5	INTRON msi
2L	11515435	2L_11515435_SNP [dm3] 2L_11515435_SNP [dm6]	C	T	1.145e^-8	2.365e^-5	SYNONYMOUS_CODING CG6509
3R	20669457	3R_20669457_SNP [dm3] 3R_24843735_SNP [dm6]	G	A	1.153e^-8	2.380e^-5	INTRON Esp
2R	8304632	2R_8304632_SNP [dm3] 2R_12417127_SNP [dm6]	G	T	1.155e^-8	2.382e^-5	INTRON CG13157	TF binding site mE1_TFBS_cad
2R	10694894	2R_10694894_SNP [dm3] 2R_14807389_SNP [dm6]	T	A	1.157e^-8	2.384e^-5	UPSTREAM kn INTERGENIC	regulatory region REDfly_CRMs
2R	14772734	2R_14772734_SNP [dm3] 2R_18885229_SNP [dm6]	C	T	1.164e^-8	2.394e^-5	INTRON sano
3R	18776394	3R_18776394_SNP [dm3] 3R_22950672_SNP [dm6]	C	A	1.165e^-8	2.395e^-5	INTRON klg
3R	7515427	3R_7515427_SNP [dm3] 3R_11689705_SNP [dm6]	T	A	1.171e^-8	2.401e^-5	DOWNSTREAM CG18765 INTRON CG6908
3R	7515611	3R_7515611_SNP [dm3] 3R_11689889_SNP [dm6]	C	T	1.171e^-8	2.401e^-5	SYNONYMOUS_CODING CG6908 DOWNSTREAM CG18765	TF binding site mE1_TFBS_cnc
2R	4036500	2R_4036500_SNP [dm3] 2R_8148995_SNP [dm6]	C	T	1.176e^-8	2.407e^-5	START_GAINED kermit UTR_5_PRIME kermit UPSTREAM kermit INTRON Lpin & 1 other	TF binding site mE1_TFBS_cad
2R	15138335	2R_15138335_SNP [dm3] 2R_19250830_SNP [dm6]	G	C	1.176e^-8	2.407e^-5	UTR_3_PRIME wbl DOWNSTREAM CG33454
3L	13262752	3L_13262752_SNP [dm3] 3L_13269652_SNP [dm6]	G	A	1.180e^-8	2.411e^-5	INTRON caps
3R	13462399	3R_13462399_SNP [dm3] 3R_17636677_SNP [dm6]	T	G	1.187e^-8	2.423e^-5	INTRON CG43175
2R	10701252	2R_10701252_SNP [dm3] 2R_14813747_SNP [dm6]	T	A	1.200e^-8	2.444e^-5	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	10701260	2R_10701260_SNP [dm3] 2R_14813755_SNP [dm6]	G	A	1.200e^-8	2.444e^-5	INTERGENIC	TF binding site mE1_TFBS_Trl
X	16808372	X_16808372_SNP [dm3] X_16914339_SNP [dm6]	T	G	1.277e^-8	2.596e^-5	INTRON CG4928	TF binding site mE1_TFBS_HSA
X	5276128	X_5276128_SNP [dm3] X_5382095_SNP [dm6]	C	T	1.277e^-8	2.596e^-5	INTRON SK
2R	12315791	2R_12315791_SNP [dm3] 2R_16428286_SNP [dm6]	A	T	1.288e^-8	2.597e^-5	INTRON Sema-2b	TF binding site BDTNP1_TFBS_twi
2R	14010797	2R_14010797_SNP [dm3] 2R_18123292_SNP [dm6]	G	C	1.288e^-8	2.597e^-5	INTRON stau	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
2R	17840136	2R_17840136_SNP [dm3] 2R_21952631_SNP [dm6]	G	T	1.293e^-8	2.597e^-5	DOWNSTREAM CG13488 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2R	17841634	2R_17841634_SNP [dm3] 2R_21954129_SNP [dm6]	T	G	1.293e^-8	2.597e^-5	UPSTREAM CR43405 DOWNSTREAM CG13494 INTERGENIC
2R	17842873	2R_17842873_SNP [dm3] 2R_21955368_SNP [dm6]	C	T	1.293e^-8	2.597e^-5	UPSTREAM CG13494 INTERGENIC
2R	17845855	2R_17845855_SNP [dm3] 2R_21958350_SNP [dm6]	C	T	1.293e^-8	2.597e^-5	INTERGENIC
2R	17845903	2R_17845903_SNP [dm3] 2R_21958398_SNP [dm6]	G	A	1.293e^-8	2.597e^-5	INTERGENIC
2R	17845972	2R_17845972_INS [dm3] 2R_21958467_INS [dm6]	T	TTCT	1.293e^-8	2.597e^-5	INTERGENIC
2R	17845974	2R_17845974_INS [dm3] 2R_21958469_INS [dm6]	T	TCTAGTATA	1.293e^-8	2.597e^-5	INTERGENIC
2R	17846001	2R_17846001_SNP [dm3] 2R_21958496_SNP [dm6]	A	T	1.293e^-8	2.597e^-5	INTERGENIC
2R	17846035	2R_17846035_INS [dm3] 2R_21958530_INS [dm6]	A	ATGTA	1.293e^-8	2.597e^-5	INTERGENIC
3R	19303967	3R_19303967_SNP [dm3] 3R_23478245_SNP [dm6]	A	T	1.330e^-8	2.667e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5620961	3L_5620961_SNP [dm3] 3L_5627861_SNP [dm6]	A	G	1.336e^-8	2.678e^-5	INTERGENIC
3L	18414686	3L_18414686_SNP [dm3] 3L_18421586_SNP [dm6]	T	A	1.341e^-8	2.685e^-5	INTERGENIC
3R	9019241	3R_9019241_SNP [dm3] 3R_13193519_SNP [dm6]	A	G	1.349e^-8	2.695e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7082096	2L_7082096_SNP [dm3] 2L_7082096_SNP [dm6]	C	T	1.349e^-8	2.695e^-5	INTRON Pvf2	TF binding site mE1_TFBS_cad
2R	16333687	2R_16333687_SNP [dm3] 2R_20446182_SNP [dm6]	G	A	1.360e^-8	2.708e^-5	INTRON CG12484	TF binding site mE1_TFBS_inv
3L	10957353	3L_10957353_SNP [dm3] 3L_10964253_SNP [dm6]	A	G	1.360e^-8	2.708e^-5	INTERGENIC
3R	26848424	3R_26848424_SNP [dm3] 3R_31022702_SNP [dm6]	A	T	1.360e^-8	2.708e^-5	INTERGENIC
2R	15882462	2R_15882462_SNP [dm3] 2R_19994957_SNP [dm6]	C	A	1.375e^-8	2.723e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15882485	2R_15882485_SNP [dm3] 2R_19994980_SNP [dm6]	T	A	1.375e^-8	2.723e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15882668	2R_15882668_SNP [dm3] 2R_19995163_SNP [dm6]	T	C	1.375e^-8	2.723e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15882669	2R_15882669_SNP [dm3] 2R_19995164_SNP [dm6]	C	A	1.375e^-8	2.723e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6031801	3R_6031801_SNP [dm3] 3R_10206079_SNP [dm6]	G	T	1.379e^-8	2.723e^-5	INTRON Syn & 1 other
3R	18232347	3R_18232347_SNP [dm3] 3R_22406625_SNP [dm6]	A	G	1.381e^-8	2.723e^-5	SYNONYMOUS_CODING CG13855
3R	18232428	3R_18232428_SNP [dm3] 3R_22406706_SNP [dm6]	A	T	1.381e^-8	2.723e^-5	SYNONYMOUS_CODING CG13855
3R	18232971	3R_18232971_SNP [dm3] 3R_22407249_SNP [dm6]	A	C	1.381e^-8	2.723e^-5	SYNONYMOUS_CODING CG13855
3L	14614795	3L_14614795_SNP [dm3] 3L_14621695_SNP [dm6]	A	G	1.381e^-8	2.723e^-5	UTR_3_PRIME shd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk
X	8763152	X_8763152_SNP [dm3] X_8869119_SNP [dm6]	A	G	1.391e^-8	2.739e^-5	INTRON CG12075	TF binding site mE1_TFBS_chinmo
3R	24180073	3R_24180073_SNP [dm3] 3R_28354351_SNP [dm6]	T	C	1.397e^-8	2.749e^-5	DOWNSTREAM Or98b INTERGENIC
3L	9808442	3L_9808442_SNP [dm3] 3L_9815342_SNP [dm6]	G	A	1.427e^-8	2.804e^-5	UPSTREAM CG43897 INTRON CG43897
2R	12977513	2R_12977513_SNP [dm3] 2R_17090008_SNP [dm6]	C	T	1.431e^-8	2.809e^-5	SYNONYMOUS_CODING Sply
3R	6009276	3R_6009276_SNP [dm3] 3R_10183554_SNP [dm6]	C	T	1.434e^-8	2.812e^-5	INTRON CG12814
2R	10453178	2R_10453178_SNP [dm3] 2R_14565673_SNP [dm6]	T	A	1.450e^-8	2.841e^-5	INTRON ttv
X	7081325	X_7081325_SNP [dm3] X_7187292_SNP [dm6]	A	T	1.491e^-8	2.919e^-5	INTRON CG9650 & 1 other
2R	18799638	2R_18799638_SNP [dm3] 2R_22912115_SNP [dm6]	C	A	1.506e^-8	2.944e^-5	NON_SYNONYMOUS_CODING nahoda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	14772693	2R_14772693_SNP [dm3] 2R_18885188_SNP [dm6]	A	T	1.516e^-8	2.962e^-5	INTRON sano
2R	8510006	2R_8510006_SNP [dm3] 2R_12622501_SNP [dm6]	A	G	1.563e^-8	3.050e^-5	UTR_3_PRIME Galphaq
2R	14772705	2R_14772705_SNP [dm3] 2R_18885200_SNP [dm6]	C	T	1.566e^-8	3.051e^-5	INTRON sano
3R	9615314	3R_9615314_SNP [dm3] 3R_13789592_SNP [dm6]	C	A	1.589e^-8	3.095e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	26492589	3R_26492589_SNP [dm3] 3R_30666867_SNP [dm6]	A	T	1.647e^-8	3.204e^-5	DOWNSTREAM CR45191 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	9338238	2R_9338238_SNP [dm3] 2R_13450733_SNP [dm6]	C	T	1.669e^-8	3.237e^-5	UTR_5_PRIME cbs UPSTREAM cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	21468030	3R_21468030_SNP [dm3] 3R_25642308_SNP [dm6]	G	A	1.669e^-8	3.237e^-5	INTRON jigr1
3R	21468136	3R_21468136_SNP [dm3] 3R_25642414_SNP [dm6]	A	C	1.669e^-8	3.237e^-5	INTRON jigr1
3L	13297445	3L_13297445_SNP [dm3] 3L_13304345_SNP [dm6]	G	A	1.678e^-8	3.250e^-5	DOWNSTREAM CR44555 INTERGENIC
X	16808648	X_16808648_SNP [dm3] X_16914615_SNP [dm6]	G	A	1.683e^-8	3.256e^-5	INTRON CG4928
X	18831082	X_18831082_SNP [dm3] X_18937049_SNP [dm6]	G	C	1.708e^-8	3.302e^-5	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	4918299	X_4918299_SNP [dm3] X_5024266_SNP [dm6]	C	T	1.737e^-8	3.353e^-5	INTRON CR44833	regulatory region REDfly_CRMs
3R	19303964	3R_19303964_SNP [dm3] 3R_23478242_SNP [dm6]	T	A	1.747e^-8	3.370e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8288892	2R_8288892_SNP [dm3] 2R_12401387_SNP [dm6]	A	T	1.755e^-8	3.381e^-5	UPSTREAM Cpr49Ae INTERGENIC
3R	17896263	3R_17896263_SNP [dm3] 3R_22070541_SNP [dm6]	T	C	1.763e^-8	3.390e^-5	INTRON how	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	17896302	3R_17896302_SNP [dm3] 3R_22070580_SNP [dm6]	T	C	1.763e^-8	3.390e^-5	INTRON how	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	15882526	2R_15882526_SNP [dm3] 2R_19995021_SNP [dm6]	G	A	1.769e^-8	3.397e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16807697	X_16807697_SNP [dm3] X_16913664_SNP [dm6]	T	A	1.773e^-8	3.397e^-5	UTR_5_PRIME CG4928 UPSTREAM CR44754	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	14065188	X_14065188_SNP [dm3] X_14171155_SNP [dm6]	A	C	1.778e^-8	3.397e^-5	NON_SYNONYMOUS_CODING CG12480 DOWNSTREAM betaNACtes1
X	14065275	X_14065275_SNP [dm3] X_14171242_SNP [dm6]	A	G	1.778e^-8	3.397e^-5	NON_SYNONYMOUS_CODING CG12480 DOWNSTREAM betaNACtes1
X	14065298	X_14065298_SNP [dm3] X_14171265_SNP [dm6]	C	T	1.778e^-8	3.397e^-5	SYNONYMOUS_CODING CG12480 DOWNSTREAM betaNACtes1
X	14065377	X_14065377_SNP [dm3] X_14171344_SNP [dm6]	G	A	1.778e^-8	3.397e^-5	NON_SYNONYMOUS_CODING CG12480 DOWNSTREAM betaNACtes1
3R	26848457	3R_26848457_SNP [dm3] 3R_31022735_SNP [dm6]	G	T	1.788e^-8	3.412e^-5	INTERGENIC
3L	12128004	3L_12128004_SNP [dm3] 3L_12134904_SNP [dm6]	T	G	1.801e^-8	3.424e^-5	INTRON CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18233007	3R_18233007_SNP [dm3] 3R_22407285_SNP [dm6]	A	G	1.801e^-8	3.424e^-5	SYNONYMOUS_CODING CG13855
3R	14820743	3R_14820743_SNP [dm3] 3R_18995021_SNP [dm6]	A	T	1.802e^-8	3.424e^-5	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	18502062	3R_18502062_SNP [dm3] 3R_22676340_SNP [dm6]	T	C	1.802e^-8	3.424e^-5	INTRON CG45058	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16054376	3R_16054376_SNP [dm3] 3R_20228654_SNP [dm6]	G	A	1.803e^-8	3.424e^-5	INTRON Nlg4	TF binding site BDTNP1_TFBS_twi
3R	25787682	3R_25787682_SNP [dm3] 3R_29961960_SNP [dm6]	A	G	1.814e^-8	3.440e^-5	UTR_5_PRIME TkR99D
2R	10695532	2R_10695532_SNP [dm3] 2R_14808027_SNP [dm6]	T	A	1.815e^-8	3.440e^-5	UPSTREAM kn & 1 other INTERGENIC	regulatory region REDfly_CRMs
3R	23314215	3R_23314215_SNP [dm3] 3R_27488493_SNP [dm6]	T	G	1.825e^-8	3.455e^-5	NON_SYNONYMOUS_CODING Gr98a
2R	12677610	2R_12677610_SNP [dm3] 2R_16790105_SNP [dm6]	G	A	1.855e^-8	3.509e^-5	INTRON CG5522
3R	9336154	3R_9336154_SNP [dm3] 3R_13510432_SNP [dm6]	A	G	1.867e^-8	3.527e^-5	INTERGENIC
3R	11811674	3R_11811674_SNP [dm3] 3R_15985952_SNP [dm6]	G	T	1.875e^-8	3.539e^-5	UPSTREAM srp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9338314	2R_9338314_SNP [dm3] 2R_13450809_SNP [dm6]	C	T	1.895e^-8	3.573e^-5	UTR_5_PRIME cbs UPSTREAM cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	2798822	2R_2798822_SNP [dm3] 2R_6911317_SNP [dm6]	T	C	1.901e^-8	3.581e^-5	INTRON CG30158
3L	9808704	3L_9808704_SNP [dm3] 3L_9815604_SNP [dm6]	G	A	1.927e^-8	3.626e^-5	UPSTREAM CG43897 INTRON CG43897
3L	9808693	3L_9808693_INS [dm3] 3L_9815593_INS [dm6]	C	CGCTC	1.938e^-8	3.644e^-5	UPSTREAM CG43897 INTRON CG43897
3R	22239849	3R_22239849_SNP [dm3] 3R_26414127_SNP [dm6]	C	G	1.969e^-8	3.698e^-5	UTR_5_PRIME CG5432
2L	18562319	2L_18562319_SNP [dm3] 2L_18562319_SNP [dm6]	A	C	1.978e^-8	3.710e^-5	INTRON Pde11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	18523232	3R_18523232_SNP [dm3] 3R_22697510_SNP [dm6]	C	T	2.019e^-8	3.783e^-5	SYNONYMOUS_CODING cd UPSTREAM Cyp6d4	TF binding site mE1_TFBS_cad
3L	11308934	3L_11308934_SNP [dm3] 3L_11315834_SNP [dm6]	C	A	2.060e^-8	3.857e^-5	EXON CR44361
2R	11489954	2R_11489954_DEL [dm3] 2R_15602449_DEL [dm6]	AGACTCCA	A	2.073e^-8	3.877e^-5	INTERGENIC
3L	9808707	3L_9808707_SNP [dm3] 3L_9815607_SNP [dm6]	A	T	2.086e^-8	3.890e^-5	UPSTREAM CG43897 INTRON CG43897
3L	9808709	3L_9808709_SNP [dm3] 3L_9815609_SNP [dm6]	T	A	2.086e^-8	3.890e^-5	UPSTREAM CG43897 INTRON CG43897
3L	9808710	3L_9808710_SNP [dm3] 3L_9815610_SNP [dm6]	T	A	2.086e^-8	3.890e^-5	UPSTREAM CG43897 INTRON CG43897
2R	9338208	2R_9338208_SNP [dm3] 2R_13450703_SNP [dm6]	C	T	2.135e^-8	3.977e^-5	UTR_5_PRIME cbs UPSTREAM cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	12984681	3L_12984681_SNP [dm3] 3L_12991581_SNP [dm6]	G	T	2.169e^-8	4.015e^-5	INTERGENIC
3R	21468120	3R_21468120_SNP [dm3] 3R_25642398_SNP [dm6]	C	T	2.183e^-8	4.015e^-5	INTRON jigr1
X	14065276	X_14065276_SNP [dm3] X_14171243_SNP [dm6]	C	T	2.211e^-8	4.015e^-5	NON_SYNONYMOUS_CODING CG12480 DOWNSTREAM betaNACtes1
2R	8198518	2R_8198518_SNP [dm3] 2R_12311013_SNP [dm6]	G	A	2.216e^-8	4.015e^-5	SYNONYMOUS_CODING CG30203 DOWNSTREAM CG17739
3L	18365929	3L_18365929_SNP [dm3] 3L_18372829_SNP [dm6]	T	C	2.216e^-8	4.015e^-5	INTERGENIC

By genomic position
Variant impact
Gene name

Microbiota_OTU026 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results