DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.612e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.0555671
In_3R_K	0.0008425
In_3R_Mo	0.0386778

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	2.8868	0.0893
In_3R_K	6.951	0.0309

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2891 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	5951041	3L_5951041_SNP [dm3] 3L_5957941_SNP [dm6]	G	A	6.240e^-9	0.012	INTERGENIC
2L	12008344	2L_12008344_SNP [dm3] 2L_12008344_SNP [dm6]	G	T	1.469e^-8	0.014	START_GAINED Rh5 UTR_5_PRIME Rh5 UPSTREAM Rh5	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2746087	3L_2746087_SNP [dm3] 3L_2746087_SNP [dm6]	T	A	1.058e^-7	0.036	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16041485	2R_16041485_SNP [dm3] 2R_20153980_SNP [dm6]	C	T	1.576e^-7	0.036	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16041682	2R_16041682_SNP [dm3] 2R_20154177_SNP [dm6]	G	T	1.576e^-7	0.036	INTERGENIC
2L	16400842	2L_16400842_SNP [dm3] 2L_16400842_SNP [dm6]	C	T	1.606e^-7	0.036	INTRON CG5888
2L	16400845	2L_16400845_SNP [dm3] 2L_16400845_SNP [dm6]	T	C	1.606e^-7	0.036	INTRON CG5888
3L	20854813	3L_20854813_SNP [dm3] 3L_20861713_SNP [dm6]	A	T	1.746e^-7	0.036	INTRON CG32432
2R	6866515	2R_6866515_SNP [dm3] 2R_10979010_SNP [dm6]	T	G	1.779e^-7	0.036	UTR_3_PRIME luna	TF binding site mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA
3L	11923037	3L_11923037_SNP [dm3] 3L_11929937_SNP [dm6]	G	A	1.941e^-7	0.036	INTRON CG44837 & 1 other	TF binding site mE1_TFBS_cad
2R	17923264	2R_17923264_INS [dm3] 2R_22035759_INS [dm6]	G	GG	2.271e^-7	0.037	DOWNSTREAM CG9308 INTRON CG34370
2L	14681430	2L_14681430_SNP [dm3] 2L_14681430_SNP [dm6]	T	C	2.363e^-7	0.037	INTRON osp
2L	4186178	2L_4186178_SNP [dm3] 2L_4186178_SNP [dm6]	G	T	3.158e^-7	0.045	DOWNSTREAM CG31961 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9928153	2R_9928153_SNP [dm3] 2R_14040648_SNP [dm6]	G	A	3.379e^-7	0.045	NON_SYNONYMOUS_CODING mam INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	6747611	2R_6747611_SNP [dm3] 2R_10860106_SNP [dm6]	G	T	3.737e^-7	0.046	INTRON CG30015 EXON CR44302	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20600688	2L_20600688_SNP [dm3] 2L_20600688_SNP [dm6]	C	G	4.311e^-7	0.047	INTRON CR44909	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20600689	2L_20600689_SNP [dm3] 2L_20600689_SNP [dm6]	G	C	4.311e^-7	0.047	INTRON CR44909	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16367475	X_16367475_INS [dm3] X_16473442_INS [dm6]	T	TT	4.659e^-7	0.048	INTRON para
X	13019590	X_13019590_SNP [dm3] X_13125557_SNP [dm6]	T	G	7.393e^-7	0.072	INTRON CG32638
2L	11989628	2L_11989628_SNP [dm3] 2L_11989628_SNP [dm6]	A	G	7.964e^-7	0.072	NON_SYNONYMOUS_CODING zuc UPSTREAM dgt2 DOWNSTREAM CG34163	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8430562	3L_8430562_SNP [dm3] 3L_8437462_SNP [dm6]	A	T	8.473e^-7	0.072	INTRON Unr
3L	8430713	3L_8430713_SNP [dm3] 3L_8437613_SNP [dm6]	G	C	8.473e^-7	0.072	SYNONYMOUS_CODING Unr
2R	16041785	2R_16041785_SNP [dm3] 2R_20154280_SNP [dm6]	T	C	8.853e^-7	0.072	INTERGENIC
2R	14667008	2R_14667008_SNP [dm3] 2R_18779503_SNP [dm6]	G	T	9.324e^-7	0.072	INTERGENIC
X	13019591	X_13019591_SNP [dm3] X_13125558_SNP [dm6]	T	C	9.733e^-7	0.072	INTRON CG32638
2R	15210073	2R_15210073_SNP [dm3] 2R_19322568_SNP [dm6]	C	T	1.070e^-6	0.077	INTRON Rgk1
2R	14667007	2R_14667007_SNP [dm3] 2R_18779502_SNP [dm6]	A	G	1.185e^-6	0.081	INTERGENIC
2L	10131049	2L_10131049_SNP [dm3] 2L_10131049_SNP [dm6]	A	T	1.282e^-6	0.081	INTRON CG44153
2L	10131058	2L_10131058_SNP [dm3] 2L_10131058_SNP [dm6]	C	A	1.282e^-6	0.081	INTRON CG44153
2R	16042250	2R_16042250_SNP [dm3] 2R_20154745_SNP [dm6]	G	T	1.361e^-6	0.081	INTERGENIC
X	11690225	X_11690225_SNP [dm3] X_11796192_SNP [dm6]	A	T	1.382e^-6	0.081	UTR_3_PRIME CkIIbeta DOWNSTREAM CkIIbeta INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl
2R	16041970	2R_16041970_SNP [dm3] 2R_20154465_SNP [dm6]	T	A	1.419e^-6	0.081	INTERGENIC
2R	15210077	2R_15210077_SNP [dm3] 2R_19322572_SNP [dm6]	C	A	1.476e^-6	0.081	INTRON Rgk1
2R	15210082	2R_15210082_SNP [dm3] 2R_19322577_SNP [dm6]	G	A	1.476e^-6	0.081	INTRON Rgk1
2R	16041895	2R_16041895_SNP [dm3] 2R_20154390_SNP [dm6]	T	C	1.574e^-6	0.081	INTERGENIC
2R	16042245	2R_16042245_SNP [dm3] 2R_20154740_SNP [dm6]	C	T	1.574e^-6	0.081	INTERGENIC
X	5413005	X_5413005_SNP [dm3] X_5518972_SNP [dm6]	A	G	1.829e^-6	0.088	DOWNSTREAM CG12730 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	4438218	X_4438218_SNP [dm3] X_4544185_SNP [dm6]	G	T	1.833e^-6	0.088	DOWNSTREAM Usf INTRON CR32773 & 1 other
2L	4186205	2L_4186205_SNP [dm3] 2L_4186205_SNP [dm6]	T	A	1.842e^-6	0.088	DOWNSTREAM CG31961 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14667120	2R_14667120_SNP [dm3] 2R_18779615_SNP [dm6]	T	G	2.073e^-6	0.091	INTERGENIC
2R	9602919	2R_9602919_SNP [dm3] 2R_13715414_SNP [dm6]	C	G	2.084e^-6	0.091	INTRON fas
2L	8098983	2L_8098983_SNP [dm3] 2L_8098983_SNP [dm6]	T	A	2.093e^-6	0.091	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	13724689	2R_13724689_INS [dm3] 2R_17837184_INS [dm6]	T	TGT	2.103e^-6	0.091	INTRON grh
3L	9741188	3L_9741188_SNP [dm3] 3L_9748088_SNP [dm6]	A	G	2.436e^-6	0.101	INTRON CG42268	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9703831	3R_9703831_SNP [dm3] 3R_13878109_SNP [dm6]	A	G	2.478e^-6	0.101	UPSTREAM E5 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7936500	2L_7936500_SNP [dm3] 2L_7936500_SNP [dm6]	C	A	2.501e^-6	0.101	INTRON Snoo
3L	850689	3L_850689_SNP [dm3] 3L_850689_SNP [dm6]	G	A	2.703e^-6	0.101	SYNONYMOUS_CODING CG13889 UPSTREAM CG13890	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	10185930	X_10185930_INS [dm3] X_10291897_INS [dm6]	G	GTTGGACAATTATTACTTAA...	3.016e^-6	0.101	INTRON alpha-Man-I
3L	1403877	3L_1403877_SNP [dm3] 3L_1403877_SNP [dm6]	G	C	3.099e^-6	0.101	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
2R	6747597	2R_6747597_SNP [dm3] 2R_10860092_SNP [dm6]	C	A	3.271e^-6	0.101	INTRON CG30015 EXON CR44302	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14667017	2R_14667017_SNP [dm3] 2R_18779512_SNP [dm6]	T	A	3.307e^-6	0.101	INTERGENIC
2R	14667019	2R_14667019_SNP [dm3] 2R_18779514_SNP [dm6]	T	A	3.307e^-6	0.101	INTERGENIC
2R	14667058	2R_14667058_SNP [dm3] 2R_18779553_SNP [dm6]	G	T	3.307e^-6	0.101	INTERGENIC
2R	14667071	2R_14667071_SNP [dm3] 2R_18779566_SNP [dm6]	A	T	3.307e^-6	0.101	INTERGENIC
2R	14667073	2R_14667073_SNP [dm3] 2R_18779568_SNP [dm6]	G	T	3.307e^-6	0.101	INTERGENIC
2R	14667115	2R_14667115_SNP [dm3] 2R_18779610_SNP [dm6]	T	C	3.307e^-6	0.101	INTERGENIC
2R	14667116	2R_14667116_SNP [dm3] 2R_18779611_SNP [dm6]	T	A	3.307e^-6	0.101	INTERGENIC
2R	14667123	2R_14667123_SNP [dm3] 2R_18779618_SNP [dm6]	A	C	3.307e^-6	0.101	INTERGENIC
2R	14667132	2R_14667132_MNP [dm3] 2R_18779627_MNP [dm6]	AAAG	TGTT	3.307e^-6	0.101	INTERGENIC
3L	4096819	3L_4096819_SNP [dm3] 3L_4096819_SNP [dm6]	C	T	3.367e^-6	0.101	INTRON CG14995	TF binding site mE1_TFBS_cad
X	19159525	X_19159525_SNP [dm3] X_19265492_SNP [dm6]	G	A	3.367e^-6	0.101	INTRON Vav	TF binding site mE1_TFBS_HSA
2R	8535595	2R_8535595_SNP [dm3] 2R_12648090_SNP [dm6]	T	A	3.471e^-6	0.101	UTR_5_PRIME CG8785
2R	6752115	2R_6752115_SNP [dm3] 2R_10864610_SNP [dm6]	A	T	3.509e^-6	0.101	INTRON CG30015
X	13411201	X_13411201_SNP [dm3] X_13517168_SNP [dm6]	A	T	3.647e^-6	0.101	INTRON Neto
2R	14666986	2R_14666986_SNP [dm3] 2R_18779481_SNP [dm6]	C	T	3.671e^-6	0.101	INTERGENIC
2R	14667009	2R_14667009_DEL [dm3] 2R_18779504_DEL [dm6]	ATTTT	A	3.671e^-6	0.101	INTERGENIC
2R	14667023	2R_14667023_DEL [dm3] 2R_18779518_DEL [dm6]	TATATAT	T	3.671e^-6	0.101	INTERGENIC
X	16748411	X_16748411_SNP [dm3] X_16854378_SNP [dm6]	G	T	3.691e^-6	0.101	INTRON CG13003
X	9118120	X_9118120_SNP [dm3] X_9224087_SNP [dm6]	G	A	3.873e^-6	0.103	UPSTREAM t INTERGENIC
3L	18209302	3L_18209302_INS [dm3] 3L_18216202_INS [dm6]	G	GG	3.956e^-6	0.103	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20017205	2L_20017205_DEL [dm3] 2L_20017205_DEL [dm6]	TT	T	3.962e^-6	0.103	UTR_5_PRIME CG43861
2L	16941562	2L_16941562_SNP [dm3] 2L_16941562_SNP [dm6]	G	A	4.081e^-6	0.103	INTERGENIC
2L	4187058	2L_4187058_SNP [dm3] 2L_4187058_SNP [dm6]	C	T	4.094e^-6	0.103	SYNONYMOUS_CODING CG31961 DOWNSTREAM CR44057	TF binding site mE1_TFBS_sens
2L	16856081	2L_16856081_DEL [dm3] 2L_16856081_DEL [dm6]	GTATCAATTTGGATTA...	C	4.140e^-6	0.103	INTRON CG31809	transposable element FlyBase
X	21952338	X_21952338_SNP [dm3] X_22550502_SNP [dm6]	T	C	4.225e^-6	0.103	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8114962	2R_8114962_SNP [dm3] 2R_12227457_SNP [dm6]	C	T	4.227e^-6	0.103	UPSTREAM CG8854 INTRON CG8854
2L	11907079	2L_11907079_SNP [dm3] 2L_11907079_SNP [dm6]	T	C	4.263e^-6	0.103	INTRON Pde1c
2L	6013636	2L_6013636_SNP [dm3] 2L_6013636_SNP [dm6]	G	A	4.727e^-6	0.113	SYNONYMOUS_CODING H2.0	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	11688593	X_11688593_SNP [dm3] X_11794560_SNP [dm6]	C	G	4.954e^-6	0.114	INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl
2R	6865936	2R_6865936_INS [dm3] 2R_10978431_INS [dm6]	T	TTTTGCT	4.991e^-6	0.114	UTR_3_PRIME luna
2R	15208776	2R_15208776_SNP [dm3] 2R_19321271_SNP [dm6]	C	G	4.994e^-6	0.114	INTRON Rgk1
2L	16844630	2L_16844630_INS [dm3] 2L_16844630_INS [dm6]	A	AC	5.039e^-6	0.114	INTRON CG13284
2L	15404207	2L_15404207_SNP [dm3] 2L_15404207_SNP [dm6]	C	G	5.362e^-6	0.118	INTERGENIC	TF binding site mE1_TFBS_cad
3L	7624224	3L_7624224_SNP [dm3] 3L_7631124_SNP [dm6]	T	C	5.364e^-6	0.118	INTRON CG33275
2R	15208076	2R_15208076_SNP [dm3] 2R_19320571_SNP [dm6]	A	C	5.401e^-6	0.118	INTRON Rgk1
2R	8536595	2R_8536595_SNP [dm3] 2R_12649090_SNP [dm6]	C	A	5.483e^-6	0.118	UPSTREAM CG8785 INTERGENIC
2L	8789650	2L_8789650_SNP [dm3] 2L_8789650_SNP [dm6]	T	C	5.556e^-6	0.118	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10130931	2L_10130931_SNP [dm3] 2L_10130931_SNP [dm6]	G	T	5.561e^-6	0.118	INTRON CG44153
2L	17993845	2L_17993845_SNP [dm3] 2L_17993845_SNP [dm6]	A	G	5.842e^-6	0.121	EXON CR44767
2L	1510210	2L_1510210_SNP [dm3] 2L_1510210_SNP [dm6]	T	C	5.850e^-6	0.121	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	19615467	2R_19615467_SNP [dm3] 2R_23727944_SNP [dm6]	G	C	6.339e^-6	0.128	INTRON Sesn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8672048	2L_8672048_SNP [dm3] 2L_8672048_SNP [dm6]	C	G	6.456e^-6	0.128	UPSTREAM Glt DOWNSTREAM Sema-1a INTERGENIC
2L	8672057	2L_8672057_INS [dm3] 2L_8672057_INS [dm6]	C	CT	6.456e^-6	0.128	UPSTREAM Glt DOWNSTREAM Sema-1a INTERGENIC
X	13634944	X_13634944_SNP [dm3] X_13740911_SNP [dm6]	T	C	6.460e^-6	0.128	UTR_3_PRIME CG11151 INTRON Grip91	TF binding site BDTNP1_TFBS_dl
2L	8789461	2L_8789461_SNP [dm3] 2L_8789461_SNP [dm6]	T	A	6.682e^-6	0.131	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10746819	3R_10746819_SNP [dm3] 3R_14921097_SNP [dm6]	G	T	6.904e^-6	0.133	SYNONYMOUS_CODING Sdr
2L	8098984	2L_8098984_SNP [dm3] 2L_8098984_SNP [dm6]	C	T	6.943e^-6	0.133	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	7805811	3L_7805811_SNP [dm3] 3L_7812711_SNP [dm6]	G	A	7.284e^-6	0.138	UTR_3_PRIME Pdp1
3L	911193	3L_911193_SNP [dm3] 3L_911193_SNP [dm6]	C	T	7.379e^-6	0.138	UTR_3_PRIME nerfin-1	regulatory region REDfly_CRMs
3L	419039	3L_419039_SNP [dm3] 3L_419039_SNP [dm6]	T	A	7.416e^-6	0.138	INTERGENIC
2R	8736160	2R_8736160_SNP [dm3] 2R_12848655_SNP [dm6]	G	T	7.810e^-6	0.144	SYNONYMOUS_CODING CG30486 UPSTREAM antr DOWNSTREAM CG17574 EXON CR45468
2R	4294034	2R_4294034_SNP [dm3] 2R_8406529_SNP [dm6]	C	T	7.997e^-6	0.146	INTRON CG2121
2R	14043358	2R_14043358_SNP [dm3] 2R_18155853_SNP [dm6]	T	C	8.195e^-6	0.147	INTRON lolal	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2R	14667169	2R_14667169_DEL [dm3] 2R_18779664_DEL [dm6]	TATTCATGAACATTCATTTT...	T	8.280e^-6	0.147	INTERGENIC
2L	16632357	2L_16632357_SNP [dm3] 2L_16632357_SNP [dm6]	G	T	8.312e^-6	0.147	INTRON CG42389
2L	10975780	2L_10975780_SNP [dm3] 2L_10975780_SNP [dm6]	G	A	8.414e^-6	0.148	UTR_3_PRIME l_2_06225 UPSTREAM abo & 1 other	TF binding site BDTNP1_TFBS_dl
2L	2347855	2L_2347855_DEL [dm3] 2L_2347855_DEL [dm6]	AA	A	8.788e^-6	0.153	INTRON CG9967 & 1 other
X	21151583	X_21151583_SNP [dm3] X_21280556_SNP [dm6]	G	A	9.166e^-6	0.158	INTRON CG32521	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5352793	2L_5352793_INS [dm3] 2L_5352793_INS [dm6]	T	TGGCT	9.286e^-6	0.158	INTRON nompC
3L	9737595	3L_9737595_SNP [dm3] 3L_9744495_SNP [dm6]	C	G	1.013e^-5	0.165	UPSTREAM CG42268 DOWNSTREAM CR44348 INTRON CG42268	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9738883	3L_9738883_SNP [dm3] 3L_9745783_SNP [dm6]	C	A	1.013e^-5	0.165	INTRON CG42268
3L	9740077	3L_9740077_SNP [dm3] 3L_9746977_SNP [dm6]	A	T	1.013e^-5	0.165	INTRON CG42268
3L	9740137	3L_9740137_SNP [dm3] 3L_9747037_SNP [dm6]	T	A	1.013e^-5	0.165	INTRON CG42268
X	21151787	X_21151787_SNP [dm3] X_21280760_SNP [dm6]	G	T	1.018e^-5	0.165	INTRON CG32521	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21151591	X_21151591_SNP [dm3] X_21280564_SNP [dm6]	G	A	1.019e^-5	0.165	INTRON CG32521	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15316383	2R_15316383_SNP [dm3] 2R_19428878_SNP [dm6]	C	T	1.095e^-5	0.174	UTR_3_PRIME CalpA INTRON CalpA
X	18386875	X_18386875_SNP [dm3] X_18492842_SNP [dm6]	C	T	1.100e^-5	0.174	UPSTREAM CG15044 DOWNSTREAM CG15043 INTERGENIC
2L	8327616	2L_8327616_SNP [dm3] 2L_8327616_SNP [dm6]	C	A	1.101e^-5	0.174	INTRON CG14275
2R	15387157	2R_15387157_SNP [dm3] 2R_19499652_SNP [dm6]	C	T	1.123e^-5	0.175	SYNONYMOUS_CODING CG15120 DOWNSTREAM CG16926
2R	14459333	2R_14459333_SNP [dm3] 2R_18571828_SNP [dm6]	C	G	1.134e^-5	0.175	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	16632330	2L_16632330_SNP [dm3] 2L_16632330_SNP [dm6]	T	A	1.146e^-5	0.175	INTRON CG42389
2R	14667055	2R_14667055_SNP [dm3] 2R_18779550_SNP [dm6]	A	T	1.147e^-5	0.175	INTERGENIC
2L	12008625	2L_12008625_SNP [dm3] 2L_12008625_SNP [dm6]	T	C	1.168e^-5	0.177	SYNONYMOUS_CODING Rh5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	14667118	2R_14667118_SNP [dm3] 2R_18779613_SNP [dm6]	G	T	1.229e^-5	0.183	INTERGENIC
2L	5352778	2L_5352778_INS [dm3] 2L_5352778_INS [dm6]	T	ACTTTAAAAAAA...	1.247e^-5	0.183	INTRON nompC
2R	7043284	2R_7043284_DEL [dm3] 2R_11155779_DEL [dm6]	ACA	C	1.248e^-5	0.183	DOWNSTREAM CG13230 INTRON CG13229
2L	17993916	2L_17993916_SNP [dm3] 2L_17993916_SNP [dm6]	G	A	1.262e^-5	0.183	EXON CR44767
2L	17993946	2L_17993946_SNP [dm3] 2L_17993946_SNP [dm6]	G	A	1.262e^-5	0.183	EXON CR44767
X	12821104	X_12821104_SNP [dm3] X_12927071_SNP [dm6]	T	A	1.302e^-5	0.186	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	18407410	2L_18407410_DEL [dm3] 2L_18407410_DEL [dm6]	TGCG	ATA	1.309e^-5	0.186	INTERGENIC
X	21089187	X_21089187_SNP [dm3] X_21218160_SNP [dm6]	A	T	1.321e^-5	0.186	INTRON CG32521 & 1 other
X	21089202	X_21089202_SNP [dm3] X_21218175_SNP [dm6]	C	T	1.321e^-5	0.186	INTRON CG32521 & 1 other
X	10471599	X_10471599_DEL [dm3] X_10577566_DEL [dm6]	TT	A	1.384e^-5	0.193	INTRON spri
2R	19616464	2R_19616464_SNP [dm3] 2R_23728941_SNP [dm6]	A	C	1.389e^-5	0.193	INTRON Sesn
2L	5492040	2L_5492040_SNP [dm3] 2L_5492040_SNP [dm6]	C	T	1.422e^-5	0.195	INTERGENIC
X	21089315	X_21089315_SNP [dm3] X_21218288_SNP [dm6]	G	A	1.427e^-5	0.195	SYNONYMOUS_CODING CG32523 INTRON CG32521	TF binding site mE1_TFBS_chinmo
2L	17994030	2L_17994030_SNP [dm3] 2L_17994030_SNP [dm6]	T	C	1.453e^-5	0.196	EXON CR44767
2R	15316395	2R_15316395_SNP [dm3] 2R_19428890_SNP [dm6]	C	T	1.473e^-5	0.196	UTR_3_PRIME CalpA INTRON CalpA
2R	12523957	2R_12523957_SNP [dm3] 2R_16636452_SNP [dm6]	C	T	1.481e^-5	0.196	INTRON Alk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17993873	2L_17993873_SNP [dm3] 2L_17993873_SNP [dm6]	T	G	1.500e^-5	0.196	EXON CR44767
3L	20854962	3L_20854962_SNP [dm3] 3L_20861862_SNP [dm6]	C	G	1.505e^-5	0.196	INTRON CG32432
3L	7826514	3L_7826514_SNP [dm3] 3L_7833414_SNP [dm6]	T	C	1.514e^-5	0.196	UPSTREAM Pdp1 INTRON Pdp1
2R	14179194	2R_14179194_SNP [dm3] 2R_18291689_SNP [dm6]	A	G	1.529e^-5	0.196	UPSTREAM CG14502 INTRON CG14502 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	17941769	2L_17941769_SNP [dm3] 2L_17941769_SNP [dm6]	C	G	1.532e^-5	0.196	INTERGENIC
2R	6748790	2R_6748790_INS [dm3] 2R_10861285_INS [dm6]	A	AC	1.544e^-5	0.196	UTR_5_PRIME CG30015 INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12008682	2L_12008682_SNP [dm3] 2L_12008682_SNP [dm6]	G	C	1.547e^-5	0.196	SPLICE_SITE_REGION Rh5 SYNONYMOUS_CODING Rh5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	12008724	2L_12008724_SNP [dm3] 2L_12008724_SNP [dm6]	G	A	1.547e^-5	0.196	INTRON Rh5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	454934	3L_454934_SNP [dm3] 3L_454934_SNP [dm6]	T	A	1.582e^-5	0.199	INTRON klar
3R	9702120	3R_9702120_SNP [dm3] 3R_13876398_SNP [dm6]	G	A	1.703e^-5	0.205	INTRON E5	TF binding site BDTNP1_TFBS_dl
2L	12008857	2L_12008857_SNP [dm3] 2L_12008857_SNP [dm6]	A	T	1.716e^-5	0.205	SYNONYMOUS_CODING Rh5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	8361023	3L_8361023_SNP [dm3] 3L_8367923_SNP [dm6]	G	T	1.718e^-5	0.205	INTERGENIC
2L	20005728	2L_20005728_SNP [dm3] 2L_20005728_SNP [dm6]	G	A	1.728e^-5	0.205	INTRON CG43861
2R	6747822	2R_6747822_SNP [dm3] 2R_10860317_SNP [dm6]	A	T	1.730e^-5	0.205	DOWNSTREAM CR44302 INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9742838	3R_9742838_SNP [dm3] 3R_13917116_SNP [dm6]	G	A	1.736e^-5	0.205	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15207208	2R_15207208_SNP [dm3] 2R_19319703_SNP [dm6]	G	A	1.741e^-5	0.205	INTRON Rgk1
2R	6863720	2R_6863720_SNP [dm3] 2R_10976215_SNP [dm6]	A	T	1.747e^-5	0.205	INTERGENIC
X	21089203	X_21089203_SNP [dm3] X_21218176_SNP [dm6]	T	A	1.750e^-5	0.205	INTRON CG32521 & 1 other
3R	21197694	3R_21197694_SNP [dm3] 3R_25371972_SNP [dm6]	T	G	1.751e^-5	0.205	INTRON Fur1
X	14867384	X_14867384_SNP [dm3] X_14973351_SNP [dm6]	G	A	1.762e^-5	0.205	INTRON eag
X	21085775	X_21085775_SNP [dm3] X_21214748_SNP [dm6]	C	A	1.763e^-5	0.205	INTRON CG32521
2R	2727902	2R_2727902_SNP [dm3] 2R_6840397_SNP [dm6]	T	A	1.808e^-5	0.205	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	13411079	X_13411079_SNP [dm3] X_13517046_SNP [dm6]	C	T	1.809e^-5	0.205	INTRON Neto
2R	2878555	2R_2878555_SNP [dm3] 2R_6991050_SNP [dm6]	A	G	1.816e^-5	0.205	INTERGENIC
2R	8150541	2R_8150541_SNP [dm3] 2R_12263036_SNP [dm6]	G	T	1.849e^-5	0.205	INTRON Cam
X	4119252	X_4119252_SNP [dm3] X_4225219_SNP [dm6]	T	A	1.850e^-5	0.205	INTERGENIC
2L	12008498	2L_12008498_SNP [dm3] 2L_12008498_SNP [dm6]	T	C	1.855e^-5	0.205	NON_SYNONYMOUS_CODING Rh5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12008563	2L_12008563_SNP [dm3] 2L_12008563_SNP [dm6]	G	T	1.855e^-5	0.205	NON_SYNONYMOUS_CODING Rh5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	12008626	2L_12008626_SNP [dm3] 2L_12008626_SNP [dm6]	A	G	1.860e^-5	0.205	NON_SYNONYMOUS_CODING Rh5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	18617250	X_18617250_SNP [dm3] X_18723217_SNP [dm6]	G	A	1.883e^-5	0.205	INTRON CCKLR-17D1	TF binding site mE1_TFBS_chinmo
2L	20016552	2L_20016552_SNP [dm3] 2L_20016552_SNP [dm6]	A	C	1.909e^-5	0.205	INTRON CG43861
2L	20016554	2L_20016554_SNP [dm3] 2L_20016554_SNP [dm6]	G	C	1.909e^-5	0.205	INTRON CG43861
3L	9742213	3L_9742213_SNP [dm3] 3L_9749113_SNP [dm6]	T	C	1.928e^-5	0.205	INTRON CG42268	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8672068	2L_8672068_SNP [dm3] 2L_8672068_SNP [dm6]	C	T	1.935e^-5	0.205	UPSTREAM Glt DOWNSTREAM Sema-1a INTERGENIC
2L	17936380	2L_17936380_SNP [dm3] 2L_17936380_SNP [dm6]	T	C	1.935e^-5	0.205	INTERGENIC
2L	17993857	2L_17993857_SNP [dm3] 2L_17993857_SNP [dm6]	A	G	1.941e^-5	0.205	EXON CR44767
2L	12008764	2L_12008764_SNP [dm3] 2L_12008764_SNP [dm6]	A	T	1.952e^-5	0.205	SYNONYMOUS_CODING Rh5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	10834226	X_10834226_SNP [dm3] X_10940193_SNP [dm6]	A	T	1.955e^-5	0.205	INTRON Myo10A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9870737	3R_9870737_SNP [dm3] 3R_14045015_SNP [dm6]	T	A	1.965e^-5	0.205	UPSTREAM tRNA:S2b:88A INTERGENIC
2R	8129674	2R_8129674_SNP [dm3] 2R_12242169_SNP [dm6]	C	A	1.976e^-5	0.205	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3L	10005031	3L_10005031_SNP [dm3] 3L_10011931_SNP [dm6]	G	A	2.001e^-5	0.207	INTRON dpr6
2L	8297178	2L_8297178_SNP [dm3] 2L_8297178_SNP [dm6]	C	T	2.053e^-5	0.21	UPSTREAM Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2835602	3L_2835602_SNP [dm3] 3L_2835602_SNP [dm6]	C	A	2.058e^-5	0.21	INTRON CG43444
2R	13638214	2R_13638214_SNP [dm3] 2R_17750709_SNP [dm6]	C	A	2.066e^-5	0.21	DOWNSTREAM CG10931 INTRON CG5002	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6863736	2R_6863736_SNP [dm3] 2R_10976231_SNP [dm6]	C	A	2.086e^-5	0.211	INTERGENIC
3R	9703666	3R_9703666_SNP [dm3] 3R_13877944_SNP [dm6]	C	T	2.094e^-5	0.211	UPSTREAM E5 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14239769	2L_14239769_SNP [dm3] 2L_14239769_SNP [dm6]	A	T	2.180e^-5	0.218	INTERGENIC
3L	665734	3L_665734_SNP [dm3] 3L_665734_SNP [dm6]	C	T	2.200e^-5	0.218	INTERGENIC
3L	12309847	3L_12309847_SNP [dm3] 3L_12316747_SNP [dm6]	C	A	2.202e^-5	0.218	INTERGENIC
2L	8303033	2L_8303033_SNP [dm3] 2L_8303033_SNP [dm6]	A	T	2.247e^-5	0.22	UPSTREAM Scgalpha & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	20016541	2L_20016541_SNP [dm3] 2L_20016541_SNP [dm6]	T	A	2.249e^-5	0.22	INTRON CG43861
X	4119198	X_4119198_SNP [dm3] X_4225165_SNP [dm6]	T	C	2.296e^-5	0.224	INTERGENIC
X	10834362	X_10834362_SNP [dm3] X_10940329_SNP [dm6]	G	A	2.334e^-5	0.226	INTRON Myo10A	TF binding site BDTNP1_TFBS_twi
2L	14064858	2L_14064858_SNP [dm3] 2L_14064858_SNP [dm6]	T	G	2.355e^-5	0.227	INTRON nAChRalpha5	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10745985	3R_10745985_SNP [dm3] 3R_14920263_SNP [dm6]	A	G	2.397e^-5	0.23	INTRON Sdr
3L	665776	3L_665776_SNP [dm3] 3L_665776_SNP [dm6]	T	C	2.412e^-5	0.23	INTERGENIC
2L	5689106	2L_5689106_SNP [dm3] 2L_5689106_SNP [dm6]	G	A	2.449e^-5	0.232	INTERGENIC
2L	17937026	2L_17937026_SNP [dm3] 2L_17937026_SNP [dm6]	C	G	2.469e^-5	0.233	INTERGENIC
2L	6268245	2L_6268245_SNP [dm3] 2L_6268245_SNP [dm6]	G	C	2.506e^-5	0.234	INTRON Ddr
2L	14834662	2L_14834662_SNP [dm3] 2L_14834662_SNP [dm6]	G	A	2.506e^-5	0.234	INTERGENIC
3L	5198948	3L_5198948_SNP [dm3] 3L_5205848_SNP [dm6]	A	G	2.522e^-5	0.235	INTRON shep
2R	6747132	2R_6747132_SNP [dm3] 2R_10859627_SNP [dm6]	T	A	2.559e^-5	0.235	UPSTREAM CR44302 INTRON CG30015	TF binding site BDTNP1_TFBS_dl
2L	16841225	2L_16841225_SNP [dm3] 2L_16841225_SNP [dm6]	G	T	2.572e^-5	0.235	INTRON SclA & 1 other
2L	16841227	2L_16841227_SNP [dm3] 2L_16841227_SNP [dm6]	T	C	2.572e^-5	0.235	INTRON SclA & 1 other
2L	16856116	2L_16856116_SNP [dm3] 2L_16856116_SNP [dm6]	C	T	2.572e^-5	0.235	INTRON CG31809	transposable element FlyBase
2L	16402829	2L_16402829_SNP [dm3] 2L_16402829_SNP [dm6]	G	T	2.604e^-5	0.235	INTRON CG5888
3R	10145711	3R_10145711_SNP [dm3] 3R_14319989_SNP [dm6]	C	T	2.606e^-5	0.235	UTR_3_PRIME pr-set7 DOWNSTREAM Afti & 1 other
2L	11291224	2L_11291224_SNP [dm3] 2L_11291224_SNP [dm6]	C	T	2.658e^-5	0.238	UPSTREAM CR43409 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11982165	2L_11982165_SNP [dm3] 2L_11982165_SNP [dm6]	G	C	2.662e^-5	0.238	NON_SYNONYMOUS_CODING CG16965
2L	4186190	2L_4186190_SNP [dm3] 2L_4186190_SNP [dm6]	G	A	2.733e^-5	0.243	DOWNSTREAM CG31961 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18142417	2R_18142417_SNP [dm3] 2R_22254912_SNP [dm6]	C	A	2.771e^-5	0.245	INTRON dve	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
2L	10978172	2L_10978172_SNP [dm3] 2L_10978172_SNP [dm6]	C	T	2.801e^-5	0.246	SYNONYMOUS_CODING SCAR
2R	8118189	2R_8118189_SNP [dm3] 2R_12230684_SNP [dm6]	A	C	2.807e^-5	0.246	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11847373	2R_11847373_SNP [dm3] 2R_15959868_SNP [dm6]	C	A	2.820e^-5	0.246	SYNONYMOUS_CODING Strn-Mlck UTR_3_PRIME Strn-Mlck
2L	16050951	2L_16050951_SNP [dm3] 2L_16050951_SNP [dm6]	T	G	2.890e^-5	0.251	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	8155933	X_8155933_INS [dm3] X_8261900_INS [dm6]	T	TAAT	2.911e^-5	0.252	INTRON CG1632
3L	2744479	3L_2744479_SNP [dm3] 3L_2744479_SNP [dm6]	G	T	2.936e^-5	0.253	INTRON Mrtf
3L	20836338	3L_20836338_SNP [dm3] 3L_20843238_SNP [dm6]	A	G	2.952e^-5	0.253	SYNONYMOUS_CODING CG11456 UTR_3_PRIME CG11456	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	5031920	X_5031920_SNP [dm3] X_5137887_SNP [dm6]	C	T	2.974e^-5	0.253	INTRON rg & 1 other
2L	2531714	2L_2531714_SNP [dm3] 2L_2531714_SNP [dm6]	C	A	2.986e^-5	0.253	INTERGENIC
2R	12068583	2R_12068583_SNP [dm3] 2R_16181078_SNP [dm6]	T	A	2.999e^-5	0.253	UPSTREAM Lis-1 INTRON Lis-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15326815	2R_15326815_SNP [dm3] 2R_19439310_SNP [dm6]	A	G	3.001e^-5	0.253	NON_SYNONYMOUS_CODING Spt5
2L	9081835	2L_9081835_SNP [dm3] 2L_9081835_SNP [dm6]	T	C	3.046e^-5	0.254	INTERGENIC
X	21067186	X_21067186_SNP [dm3] X_21196159_SNP [dm6]	C	T	3.047e^-5	0.254	INTERGENIC
3L	20853629	3L_20853629_SNP [dm3] 3L_20860529_SNP [dm6]	A	T	3.061e^-5	0.254	INTRON CG32432
2L	8302985	2L_8302985_SNP [dm3] 2L_8302985_SNP [dm6]	T	C	3.122e^-5	0.258	UTR_5_PRIME wol UPSTREAM Scgalpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Stat92E
X	13244546	X_13244546_SNP [dm3] X_13350513_SNP [dm6]	G	C	3.142e^-5	0.258	INTERGENIC
2R	3662900	2R_3662900_SNP [dm3] 2R_7775395_SNP [dm6]	T	G	3.151e^-5	0.258	INTRON CG30497 & 1 other
2L	17961962	2L_17961962_SNP [dm3] 2L_17961962_SNP [dm6]	G	A	3.161e^-5	0.258	DOWNSTREAM btv INTERGENIC
2R	14667080	2R_14667080_SNP [dm3] 2R_18779575_SNP [dm6]	T	A	3.177e^-5	0.258	INTERGENIC
2R	16043193	2R_16043193_SNP [dm3] 2R_20155688_SNP [dm6]	G	T	3.186e^-5	0.258	INTERGENIC
2L	14681817	2L_14681817_SNP [dm3] 2L_14681817_SNP [dm6]	G	C	3.228e^-5	0.26	INTRON osp
2L	14704041	2L_14704041_SNP [dm3] 2L_14704041_SNP [dm6]	T	C	3.251e^-5	0.26	INTERGENIC
2R	8117914	2R_8117914_SNP [dm3] 2R_12230409_SNP [dm6]	G	A	3.252e^-5	0.26	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	15362288	2L_15362288_SNP [dm3] 2L_15362288_SNP [dm6]	A	G	3.283e^-5	0.261	UPSTREAM CG15258 INTERGENIC
X	5452116	X_5452116_SNP [dm3] X_5558083_SNP [dm6]	A	G	3.298e^-5	0.261	INTRON Vsx2
2L	9082643	2L_9082643_SNP [dm3] 2L_9082643_SNP [dm6]	T	C	3.326e^-5	0.262	INTERGENIC
X	11688777	X_11688777_SNP [dm3] X_11794744_SNP [dm6]	T	C	3.370e^-5	0.263	INTRON CkIIbeta
3R	9870704	3R_9870704_SNP [dm3] 3R_14044982_SNP [dm6]	A	T	3.394e^-5	0.263	UPSTREAM tRNA:S2b:88A INTERGENIC
3R	9870707	3R_9870707_SNP [dm3] 3R_14044985_SNP [dm6]	A	G	3.394e^-5	0.263	UPSTREAM tRNA:S2b:88A INTERGENIC
2R	8129364	2R_8129364_DEL [dm3] 2R_12241859_DEL [dm6]	AA	A	3.400e^-5	0.263	UTR_3_PRIME CG43315 UPSTREAM CG43316 DOWNSTREAM CG43315
2R	7316154	2R_7316154_SNP [dm3] 2R_11428649_SNP [dm6]	A	G	3.406e^-5	0.263	UPSTREAM Drip INTRON Drip
X	21089357	X_21089357_SNP [dm3] X_21218330_SNP [dm6]	T	C	3.469e^-5	0.265	SYNONYMOUS_CODING CG32523 INTRON CG32521	TF binding site mE1_TFBS_chinmo
3L	418147	3L_418147_SNP [dm3] 3L_418147_SNP [dm6]	C	T	3.479e^-5	0.265	INTERGENIC	regulatory region REDfly_CRMs
2R	12586579	2R_12586579_SNP [dm3] 2R_16699074_SNP [dm6]	G	T	3.480e^-5	0.265	SYNONYMOUS_CODING CG30463	insulator Insulator_Class_II.mE01
2L	18946236	2L_18946236_SNP [dm3] 2L_18946236_SNP [dm6]	A	T	3.487e^-5	0.265	UPSTREAM CR42848 DOWNSTREAM CR44740 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	2811918	2R_2811918_SNP [dm3] 2R_6924413_SNP [dm6]	C	A	3.500e^-5	0.265	NON_SYNONYMOUS_CODING CG3358 DOWNSTREAM mim	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	6751665	2R_6751665_SNP [dm3] 2R_10864160_SNP [dm6]	T	C	3.539e^-5	0.267	INTRON CG30015
X	12307941	X_12307941_SNP [dm3] X_12413908_SNP [dm6]	C	A	3.594e^-5	0.269	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10943225	3L_10943225_SNP [dm3] 3L_10950125_SNP [dm6]	G	A	3.604e^-5	0.269	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6791898	X_6791898_SNP [dm3] X_6897865_SNP [dm6]	T	G	3.647e^-5	0.271	INTERGENIC
2L	2531569	2L_2531569_SNP [dm3] 2L_2531569_SNP [dm6]	T	A	3.674e^-5	0.272	INTERGENIC
2L	1513775	2L_1513775_SNP [dm3] 2L_1513775_SNP [dm6]	T	C	3.704e^-5	0.273	INTERGENIC
3L	14197953	3L_14197953_SNP [dm3] 3L_14204853_SNP [dm6]	G	T	3.751e^-5	0.274	UPSTREAM nuf DOWNSTREAM CG32141 INTRON nuf	TF binding site BDTNP1_TFBS_dl
2R	6745127	2R_6745127_DEL [dm3] 2R_10857622_DEL [dm6]	GTT	G	3.754e^-5	0.274	INTRON CG30015
X	6657404	X_6657404_SNP [dm3] X_6763371_SNP [dm6]	G	C	3.783e^-5	0.274	SYNONYMOUS_CODING CG14438	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6863687	2R_6863687_SNP [dm3] 2R_10976182_SNP [dm6]	A	G	3.783e^-5	0.274	INTERGENIC
2R	6863697	2R_6863697_SNP [dm3] 2R_10976192_SNP [dm6]	T	C	3.783e^-5	0.274	INTERGENIC
2L	8672065	2L_8672065_SNP [dm3] 2L_8672065_SNP [dm6]	A	G	3.804e^-5	0.274	UPSTREAM Glt DOWNSTREAM Sema-1a INTERGENIC
2L	17111482	2L_17111482_SNP [dm3] 2L_17111482_SNP [dm6]	T	A	3.808e^-5	0.274	INTERGENIC
2L	12771234	2L_12771234_SNP [dm3] 2L_12771234_SNP [dm6]	A	G	3.929e^-5	0.281	INTERGENIC
2L	17350695	2L_17350695_SNP [dm3] 2L_17350695_SNP [dm6]	C	T	3.935e^-5	0.281	INTERGENIC
3R	20841215	3R_20841215_SNP [dm3] 3R_25015493_SNP [dm6]	G	A	3.982e^-5	0.282	SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16653540	2R_16653540_SNP [dm3] 2R_20766035_SNP [dm6]	A	C	3.992e^-5	0.282	UPSTREAM CR44665 INTERGENIC
X	9118129	X_9118129_SNP [dm3] X_9224096_SNP [dm6]	A	G	4.030e^-5	0.283	UPSTREAM t INTERGENIC
X	21151632	X_21151632_DEL [dm3] X_21280605_DEL [dm6]	TTTTTTTT	A	4.031e^-5	0.283	INTRON CG32521	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8755121	3L_8755121_SNP [dm3] 3L_8762021_SNP [dm6]	A	G	4.046e^-5	0.283	NON_SYNONYMOUS_CODING Fhos	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12735111	X_12735111_SNP [dm3] X_12841078_SNP [dm6]	A	T	4.079e^-5	0.284	INTRON Pde9
2R	16641336	2R_16641336_SNP [dm3] 2R_20753831_SNP [dm6]	C	A	4.112e^-5	0.285	DOWNSTREAM CG34202 INTERGENIC
3L	8347456	3L_8347456_SNP [dm3] 3L_8354356_SNP [dm6]	G	A	4.123e^-5	0.285	SYNONYMOUS_CODING CG17352 UTR_3_PRIME CG17352 UPSTREAM mir-4913	TF binding site mE1_TFBS_cad
2L	10164747	2L_10164747_SNP [dm3] 2L_10164747_SNP [dm6]	A	T	4.134e^-5	0.285	INTRON CG44153
X	10836304	X_10836304_SNP [dm3] X_10942271_SNP [dm6]	C	T	4.160e^-5	0.285	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
X	13848346	X_13848346_SNP [dm3] X_13954313_SNP [dm6]	G	A	4.175e^-5	0.285	UPSTREAM CG11068 INTRON mamo	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
X	4246508	X_4246508_SNP [dm3] X_4352475_SNP [dm6]	G	T	4.201e^-5	0.285	INTRON norpA
X	4247017	X_4247017_SNP [dm3] X_4352984_SNP [dm6]	G	A	4.201e^-5	0.285	INTRON norpA
2L	15400253	2L_15400253_SNP [dm3] 2L_15400253_SNP [dm6]	G	A	4.248e^-5	0.287	UPSTREAM CR44860 EXON CR45374
3L	938513	3L_938513_SNP [dm3] 3L_938513_SNP [dm6]	C	T	4.264e^-5	0.287	INTRON Glut1
3R	17941001	3R_17941001_SNP [dm3] 3R_22115279_SNP [dm6]	T	A	4.266e^-5	0.287	DOWNSTREAM Ir94b & 1 other INTERGENIC
2R	4081025	2R_4081025_SNP [dm3] 2R_8193520_SNP [dm6]	A	G	4.292e^-5	0.287	INTRON LRP1
3R	25599792	3R_25599792_SNP [dm3] 3R_29774070_SNP [dm6]	A	G	4.298e^-5	0.287	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9703079	3R_9703079_SNP [dm3] 3R_13877357_SNP [dm6]	G	A	4.335e^-5	0.287	UPSTREAM E5 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18966587	2R_18966587_SNP [dm3] 2R_23079064_SNP [dm6]	T	A	4.347e^-5	0.287	UPSTREAM Art7 DOWNSTREAM CG43659 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	13019297	X_13019297_SNP [dm3] X_13125264_SNP [dm6]	T	C	4.352e^-5	0.287	INTRON CG32638
2L	17937039	2L_17937039_SNP [dm3] 2L_17937039_SNP [dm6]	A	T	4.365e^-5	0.287	INTERGENIC
3L	8347610	3L_8347610_SNP [dm3] 3L_8354510_SNP [dm6]	T	A	4.438e^-5	0.289	SYNONYMOUS_CODING CG17352 UTR_3_PRIME CG17352 UPSTREAM mir-4913	TF binding site mE1_TFBS_cad
X	16367546	X_16367546_SNP [dm3] X_16473513_SNP [dm6]	A	T	4.440e^-5	0.289	INTRON para
2L	12008444	2L_12008444_SNP [dm3] 2L_12008444_SNP [dm6]	G	T	4.443e^-5	0.289	UTR_5_PRIME Rh5	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7660679	3L_7660679_SNP [dm3] 3L_7667579_SNP [dm6]	T	C	4.529e^-5	0.294	NON_SYNONYMOUS_CODING Ank2 INTRON CG32373 & 2 others
3L	453922	3L_453922_SNP [dm3] 3L_453922_SNP [dm6]	C	T	4.571e^-5	0.294	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2572088	2R_2572088_SNP [dm3] 2R_6684583_SNP [dm6]	A	G	4.604e^-5	0.294	UTR_3_PRIME CG15909 UPSTREAM CR44165 DOWNSTREAM Tdc2 INTRON CG9422
2R	16040583	2R_16040583_SNP [dm3] 2R_20153078_SNP [dm6]	C	A	4.605e^-5	0.294	INTERGENIC
2R	16040762	2R_16040762_SNP [dm3] 2R_20153257_SNP [dm6]	T	C	4.605e^-5	0.294	INTERGENIC
X	7160691	X_7160691_SNP [dm3] X_7266658_SNP [dm6]	G	A	4.610e^-5	0.294	UPSTREAM CG1958 INTRON CR44357	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	10839241	X_10839241_SNP [dm3] X_10945208_SNP [dm6]	A	G	4.658e^-5	0.295	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2L	19256952	2L_19256952_SNP [dm3] 2L_19256952_SNP [dm6]	C	T	4.668e^-5	0.295	INTERGENIC
2R	14680721	2R_14680721_SNP [dm3] 2R_18793216_SNP [dm6]	G	A	4.680e^-5	0.295	SYNONYMOUS_CODING CG15080
X	7589725	X_7589725_INS [dm3] X_7695692_INS [dm6]	A	ATAAA	4.692e^-5	0.295	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2L	2531944	2L_2531944_SNP [dm3] 2L_2531944_SNP [dm6]	C	T	4.704e^-5	0.295	INTERGENIC
2L	13895674	2L_13895674_SNP [dm3] 2L_13895674_SNP [dm6]	A	C	4.734e^-5	0.295	SYNONYMOUS_CODING CenG1A	TF binding site mE1_TFBS_cad
X	6833165	X_6833165_SNP [dm3] X_6939132_SNP [dm6]	G	A	4.734e^-5	0.295	INTRON CG14431
2R	2572216	2R_2572216_SNP [dm3] 2R_6684711_SNP [dm6]	C	T	4.799e^-5	0.297	UPSTREAM CR44165 DOWNSTREAM Tdc2 & 1 other INTRON CG9422
2L	1513760	2L_1513760_SNP [dm3] 2L_1513760_SNP [dm6]	T	G	4.811e^-5	0.297	INTERGENIC
2L	17363620	2L_17363620_SNP [dm3] 2L_17363620_SNP [dm6]	C	T	4.856e^-5	0.298	SYNONYMOUS_CODING CG31804
2L	17363644	2L_17363644_SNP [dm3] 2L_17363644_SNP [dm6]	G	A	4.856e^-5	0.298	SYNONYMOUS_CODING CG31804
3L	72988	3L_72988_SNP [dm3] 3L_72988_SNP [dm6]	T	C	4.870e^-5	0.298	DOWNSTREAM CG13405 EXON CR43988	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12173701	3L_12173701_SNP [dm3] 3L_12180601_SNP [dm6]	A	G	4.893e^-5	0.298	INTRON CAH2
2L	12771231	2L_12771231_SNP [dm3] 2L_12771231_SNP [dm6]	C	T	4.911e^-5	0.299	INTERGENIC
2L	8838801	2L_8838801_SNP [dm3] 2L_8838801_SNP [dm6]	G	A	4.943e^-5	0.299	INTERGENIC
2L	5354781	2L_5354781_SNP [dm3] 2L_5354781_SNP [dm6]	G	A	4.945e^-5	0.299	INTRON nompC
3R	10745216	3R_10745216_SNP [dm3] 3R_14919494_SNP [dm6]	T	C	4.974e^-5	0.299	INTRON Sdr
2R	6483413	2R_6483413_INS [dm3] 2R_10595908_INS [dm6]	G	GATTTG	5.024e^-5	0.301	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
2L	14811378	2L_14811378_SNP [dm3] 2L_14811378_SNP [dm6]	A	G	5.080e^-5	0.301	NON_SYNONYMOUS_CODING CG33309
3L	12518125	3L_12518125_SNP [dm3] 3L_12525025_SNP [dm6]	A	G	5.089e^-5	0.301	SYNONYMOUS_CODING ver DOWNSTREAM eIF-2beta	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10129420	2L_10129420_SNP [dm3] 2L_10129420_SNP [dm6]	G	A	5.095e^-5	0.301	INTRON CG44153	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10669428	2R_10669428_SNP [dm3] 2R_14781923_SNP [dm6]	T	C	5.097e^-5	0.301	INTRON kn
3L	19389588	3L_19389588_SNP [dm3] 3L_19396488_SNP [dm6]	T	G	5.098e^-5	0.301	INTRON CG32206
3L	8754981	3L_8754981_SNP [dm3] 3L_8761881_SNP [dm6]	G	C	5.155e^-5	0.304	NON_SYNONYMOUS_CODING Fhos	TF binding site mE1_TFBS_inv
2R	16641748	2R_16641748_SNP [dm3] 2R_20754243_SNP [dm6]	G	A	5.241e^-5	0.306	DOWNSTREAM CG34202 INTERGENIC
3R	24502779	3R_24502779_SNP [dm3] 3R_28677057_SNP [dm6]	C	T	5.241e^-5	0.306	INTRON CG9990
3L	968092	3L_968092_SNP [dm3] 3L_968092_SNP [dm6]	C	T	5.252e^-5	0.306	INTRON Glut1
2R	16040804	2R_16040804_DEL [dm3] 2R_20153299_DEL [dm6]	GGT	G	5.278e^-5	0.306	INTERGENIC
2L	16051143	2L_16051143_SNP [dm3] 2L_16051143_SNP [dm6]	C	T	5.300e^-5	0.306	INTRON beat-Ia	TF binding site mE1_TFBS_cad
2L	1401103	2L_1401103_SNP [dm3] 2L_1401103_SNP [dm6]	C	T	5.321e^-5	0.306	INTRON lea
X	19397337	X_19397337_SNP [dm3] X_19503304_SNP [dm6]	T	A	5.356e^-5	0.306	INTRON Pfrx & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20865262	3L_20865262_SNP [dm3] 3L_20872162_SNP [dm6]	C	G	5.362e^-5	0.306	INTRON CG32432
2L	21580138	2L_21580138_SNP [dm3] 2L_21580138_SNP [dm6]	T	C	5.364e^-5	0.306	INTRON nompB
2L	9646582	2L_9646582_SNP [dm3] 2L_9646582_SNP [dm6]	C	T	5.371e^-5	0.306	SYNONYMOUS_CODING Apoltp
2R	17235521	2R_17235521_SNP [dm3] 2R_21348016_SNP [dm6]	C	T	5.392e^-5	0.306	UPSTREAM CG9822 DOWNSTREAM CG17974 INTERGENIC
2R	8129420	2R_8129420_SNP [dm3] 2R_12241915_SNP [dm6]	T	C	5.411e^-5	0.306	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	12068510	2R_12068510_DEL [dm3] 2R_16181005_DEL [dm6]	ACACCTATTAATTTAA...	A	5.416e^-5	0.306	UPSTREAM Lis-1 INTRON Lis-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3011504	X_3011504_INS [dm3] X_3117471_INS [dm6]	C	CGGGCCAGAGGGCCTGC...	5.488e^-5	0.308	INTRON kirre
2L	12303709	2L_12303709_SNP [dm3] 2L_12303709_SNP [dm6]	T	G	5.516e^-5	0.308	INTRON aret
2R	2564604	2R_2564604_SNP [dm3] 2R_6677099_SNP [dm6]	G	C	5.520e^-5	0.308	UTR_3_PRIME Tdc1 INTRON CG9422	TF binding site mE1_TFBS_kn
2R	8126923	2R_8126923_SNP [dm3] 2R_12239418_SNP [dm6]	A	T	5.522e^-5	0.308	UPSTREAM CG13170 INTERGENIC
2R	5904489	2R_5904489_SNP [dm3] 2R_10016984_SNP [dm6]	C	A	5.534e^-5	0.308	INTRON Pka-R2
2R	15210041	2R_15210041_SNP [dm3] 2R_19322536_SNP [dm6]	A	G	5.573e^-5	0.309	INTRON Rgk1
3L	419094	3L_419094_SNP [dm3] 3L_419094_SNP [dm6]	C	T	5.594e^-5	0.309	INTERGENIC
2L	19986951	2L_19986951_SNP [dm3] 2L_19986951_SNP [dm6]	C	A	5.600e^-5	0.309	INTRON CG43861
3R	3161111	3R_3161111_SNP [dm3] 3R_7335389_SNP [dm6]	G	A	5.609e^-5	0.309	INTERGENIC
3L	11923910	3L_11923910_SNP [dm3] 3L_11930810_SNP [dm6]	T	A	5.656e^-5	0.309	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11924426	3L_11924426_SNP [dm3] 3L_11931326_SNP [dm6]	G	T	5.656e^-5	0.309	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3610130	X_3610130_SNP [dm3] X_3716097_SNP [dm6]	A	C	5.802e^-5	0.317	INTRON Rala
2R	12586736	2R_12586736_SNP [dm3] 2R_16699231_SNP [dm6]	G	A	5.827e^-5	0.317	SYNONYMOUS_CODING CG30463
X	13544957	X_13544957_SNP [dm3] X_13650924_SNP [dm6]	T	A	5.863e^-5	0.318	INTRON NFAT	TF binding site mE1_TFBS_HSA
2R	14667101	2R_14667101_SNP [dm3] 2R_18779596_SNP [dm6]	C	A	5.890e^-5	0.318	INTERGENIC
3R	9870717	3R_9870717_SNP [dm3] 3R_14044995_SNP [dm6]	G	A	5.907e^-5	0.318	UPSTREAM tRNA:S2b:88A INTERGENIC
3L	20870837	3L_20870837_SNP [dm3] 3L_20877737_SNP [dm6]	A	G	5.920e^-5	0.318	INTRON CG32432
2L	4959129	2L_4959129_SNP [dm3] 2L_4959129_SNP [dm6]	T	C	5.958e^-5	0.318	SYNONYMOUS_CODING CG34124 DOWNSTREAM Marcal1	TF binding site mE1_TFBS_cad
2L	4959138	2L_4959138_SNP [dm3] 2L_4959138_SNP [dm6]	C	T	5.958e^-5	0.318	SYNONYMOUS_CODING CG34124 DOWNSTREAM Marcal1	TF binding site mE1_TFBS_cad
2L	4959144	2L_4959144_SNP [dm3] 2L_4959144_SNP [dm6]	C	A	5.958e^-5	0.318	SYNONYMOUS_CODING CG34124 DOWNSTREAM Marcal1	TF binding site mE1_TFBS_cad
2L	9642247	2L_9642247_SNP [dm3] 2L_9642247_SNP [dm6]	T	C	5.987e^-5	0.318	SYNONYMOUS_CODING Apoltp
X	3608271	X_3608271_SNP [dm3] X_3714238_SNP [dm6]	G	C	6.014e^-5	0.319	INTRON Rala
X	10805373	X_10805373_SNP [dm3] X_10911340_SNP [dm6]	T	C	6.059e^-5	0.32	INTRON CG43901
3L	3902371	3L_3902371_SNP [dm3] 3L_3902371_SNP [dm6]	G	A	6.070e^-5	0.32	UPSTREAM Ubi-p63E INTRON Ubi-p63E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2R	19054603	2R_19054603_SNP [dm3] 2R_23167080_SNP [dm6]	G	T	6.079e^-5	0.32	INTRON CG34371	TF binding site mE1_TFBS_HSA
2L	18375672	2L_18375672_SNP [dm3] 2L_18375672_SNP [dm6]	T	A	6.115e^-5	0.32	INTRON Fas3
2L	7211184	2L_7211184_DEL [dm3] 2L_7211184_DEL [dm6]	GTATG	G	6.133e^-5	0.32	INTRON CG13784
2L	5349042	2L_5349042_SNP [dm3] 2L_5349042_SNP [dm6]	G	T	6.155e^-5	0.32	INTRON nompC
2L	16376614	2L_16376614_SNP [dm3] 2L_16376614_SNP [dm6]	C	A	6.177e^-5	0.32	INTERGENIC
2R	14667100	2R_14667100_SNP [dm3] 2R_18779595_SNP [dm6]	A	T	6.184e^-5	0.32	INTERGENIC
2L	8386144	2L_8386144_SNP [dm3] 2L_8386144_SNP [dm6]	T	G	6.214e^-5	0.321	UTR_5_PRIME CG13384 INTRON CG13384	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	14713401	2L_14713401_SNP [dm3] 2L_14713401_SNP [dm6]	G	A	6.242e^-5	0.322	UPSTREAM CG34165 DOWNSTREAM CG15282 INTERGENIC
2R	15430598	2R_15430598_DEL [dm3] 2R_19543093_DEL [dm6]	AA	A	6.256e^-5	0.322	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	19105023	2L_19105023_INS [dm3] 2L_19105023_INS [dm6]	T	TAT	6.312e^-5	0.324	INTRON Lim3
X	18772011	X_18772011_SNP [dm3] X_18877978_SNP [dm6]	G	A	6.406e^-5	0.327	SYNONYMOUS_CODING CG34401	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16200116	3L_16200116_SNP [dm3] 3L_16207016_SNP [dm6]	A	T	6.415e^-5	0.327	INTERGENIC
3L	8867607	3L_8867607_SNP [dm3] 3L_8874507_SNP [dm6]	G	T	6.445e^-5	0.327	INTRON dally
3L	20854977	3L_20854977_SNP [dm3] 3L_20861877_SNP [dm6]	G	A	6.463e^-5	0.327	INTRON CG32432
X	15796941	X_15796941_SNP [dm3] X_15902908_SNP [dm6]	A	G	6.465e^-5	0.327	INTRON shi
2R	15434153	2R_15434153_SNP [dm3] 2R_19546648_SNP [dm6]	C	T	6.497e^-5	0.327	SYNONYMOUS_CODING sm INTRON sm	TF binding site mE1_TFBS_cnc
2L	4185700	2L_4185700_SNP [dm3] 2L_4185700_SNP [dm6]	G	T	6.510e^-5	0.327	DOWNSTREAM CG31961 INTRON CR44057
2R	2571259	2R_2571259_SNP [dm3] 2R_6683754_SNP [dm6]	G	A	6.595e^-5	0.331	SYNONYMOUS_CODING CG15909 UPSTREAM CR44165 DOWNSTREAM Tdc2 INTRON CG9422	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
X	17646715	X_17646715_DEL [dm3] X_17752682_DEL [dm6]	TT	C	6.631e^-5	0.332	DOWNSTREAM CG42684 INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	12524066	2R_12524066_SNP [dm3] 2R_16636561_SNP [dm6]	G	A	6.689e^-5	0.332	INTRON Alk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14667097	2R_14667097_SNP [dm3] 2R_18779592_SNP [dm6]	A	C	6.695e^-5	0.332	INTERGENIC
3L	3460796	3L_3460796_SNP [dm3] 3L_3460796_SNP [dm6]	G	A	6.718e^-5	0.332	START_GAINED eIF5B UTR_5_PRIME eIF5B UPSTREAM armi & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2L	22127221	2L_22127221_SNP [dm3] 2L_22127221_SNP [dm6]	T	G	6.733e^-5	0.332	UTR_3_PRIME CycK DOWNSTREAM CG3651
2L	22127231	2L_22127231_SNP [dm3] 2L_22127231_SNP [dm6]	G	A	6.733e^-5	0.332	UTR_3_PRIME CycK DOWNSTREAM CG3651
2L	21912147	2L_21912147_SNP [dm3] 2L_21912147_SNP [dm6]	C	T	6.761e^-5	0.332	INTERGENIC	transposable element FlyBase
X	14769040	X_14769040_SNP [dm3] X_14875007_SNP [dm6]	T	C	6.780e^-5	0.332	DOWNSTREAM CG45065 & 1 other INTRON Flo2
2L	12771226	2L_12771226_SNP [dm3] 2L_12771226_SNP [dm6]	G	A	6.790e^-5	0.332	INTERGENIC
3L	20870761	3L_20870761_SNP [dm3] 3L_20877661_SNP [dm6]	A	G	6.846e^-5	0.333	INTRON CG32432
3L	20870797	3L_20870797_SNP [dm3] 3L_20877697_SNP [dm6]	G	A	6.846e^-5	0.333	INTRON CG32432
3R	13833735	3R_13833735_SNP [dm3] 3R_18008013_SNP [dm6]	A	C	6.915e^-5	0.333	INTRON cpo	TF binding site BDTNP1_TFBS_dl
X	2857555	X_2857555_SNP [dm3] X_2963522_SNP [dm6]	T	C	6.916e^-5	0.333	INTRON kirre & 1 other
X	2857556	X_2857556_SNP [dm3] X_2963523_SNP [dm6]	G	A	6.916e^-5	0.333	INTRON kirre & 1 other
X	21151548	X_21151548_SNP [dm3] X_21280521_SNP [dm6]	C	G	6.937e^-5	0.333	INTRON CG32521	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9734141	3L_9734141_SNP [dm3] 3L_9741041_SNP [dm6]	A	T	6.951e^-5	0.333	UPSTREAM CR44348 INTRON CG42268
3L	5734041	3L_5734041_SNP [dm3] 3L_5740941_SNP [dm6]	A	G	6.967e^-5	0.333	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo
2L	20017055	2L_20017055_SNP [dm3] 2L_20017055_SNP [dm6]	G	A	6.989e^-5	0.333	UTR_5_PRIME CG43861
2L	4550543	2L_4550543_SNP [dm3] 2L_4550543_SNP [dm6]	G	A	6.993e^-5	0.333	INTRON dp
X	11694533	X_11694533_SNP [dm3] X_11800500_SNP [dm6]	C	A	7.000e^-5	0.333	UTR_3_PRIME CkIIbeta
3L	8355246	3L_8355246_SNP [dm3] 3L_8362146_SNP [dm6]	G	A	7.030e^-5	0.334	INTERGENIC
3L	11529686	3L_11529686_SNP [dm3] 3L_11536586_SNP [dm6]	A	T	7.125e^-5	0.336	INTRON Mob2
X	11694464	X_11694464_SNP [dm3] X_11800431_SNP [dm6]	C	T	7.130e^-5	0.336	UTR_3_PRIME CkIIbeta	TF binding site BDTNP1_TFBS_dl
X	11694499	X_11694499_SNP [dm3] X_11800466_SNP [dm6]	C	T	7.130e^-5	0.336	UTR_3_PRIME CkIIbeta	TF binding site BDTNP1_TFBS_dl
3R	13784765	3R_13784765_SNP [dm3] 3R_17959043_SNP [dm6]	T	G	7.146e^-5	0.336	INTRON cpo
3R	20997240	3R_20997240_SNP [dm3] 3R_25171518_SNP [dm6]	A	G	7.203e^-5	0.336	SYNONYMOUS_CODING lobo	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4320055	3L_4320055_SNP [dm3] 3L_4320055_SNP [dm6]	A	T	7.206e^-5	0.336	INTRON CG32250	TF binding site mE1_TFBS_HSA
3L	541235	3L_541235_SNP [dm3] 3L_541235_SNP [dm6]	A	G	7.253e^-5	0.336	SYNONYMOUS_CODING CG17180 UPSTREAM klar DOWNSTREAM Cypl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19986950	2L_19986950_SNP [dm3] 2L_19986950_SNP [dm6]	T	G	7.264e^-5	0.336	INTRON CG43861
2L	7214905	2L_7214905_SNP [dm3] 2L_7214905_SNP [dm6]	A	T	7.269e^-5	0.336	INTRON CG13784
2L	2601883	2L_2601883_SNP [dm3] 2L_2601883_SNP [dm6]	C	T	7.271e^-5	0.336	UPSTREAM CR44789 INTERGENIC
2L	19950900	2L_19950900_SNP [dm3] 2L_19950900_SNP [dm6]	G	T	7.292e^-5	0.336	INTRON sick	TF binding site BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_sens
2R	16043835	2R_16043835_SNP [dm3] 2R_20156330_SNP [dm6]	G	A	7.292e^-5	0.336	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19647124	2L_19647124_SNP [dm3] 2L_19647124_SNP [dm6]	G	A	7.334e^-5	0.336	INTRON Lar
2R	866112	2R_866112_SNP [dm3] 2R_4978607_SNP [dm6]	T	C	7.340e^-5	0.336	INTRON Ir41a
2L	13316972	2L_13316972_SNP [dm3] 2L_13316972_SNP [dm6]	C	T	7.353e^-5	0.336	INTRON CG43778
X	3162708	X_3162708_SNP [dm3] X_3268675_SNP [dm6]	A	T	7.375e^-5	0.336	INTRON dnc
3L	1257924	3L_1257924_SNP [dm3] 3L_1257924_SNP [dm6]	A	G	7.408e^-5	0.337	INTRON CG9134
2L	12617411	2L_12617411_SNP [dm3] 2L_12617411_SNP [dm6]	C	T	7.442e^-5	0.338	UPSTREAM nub INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2L	1538955	2L_1538955_SNP [dm3] 2L_1538955_SNP [dm6]	C	A	7.528e^-5	0.338	INTERGENIC
3L	14199802	3L_14199802_SNP [dm3] 3L_14206702_SNP [dm6]	T	C	7.534e^-5	0.338	INTRON nuf	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	9082678	2L_9082678_SNP [dm3] 2L_9082678_SNP [dm6]	G	C	7.537e^-5	0.338	INTERGENIC
2L	10154799	2L_10154799_SNP [dm3] 2L_10154799_SNP [dm6]	C	A	7.548e^-5	0.338	SYNONYMOUS_CODING CG4839 INTRON CG44153
3L	8452344	3L_8452344_SNP [dm3] 3L_8459244_SNP [dm6]	A	C	7.558e^-5	0.338	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16641331	2R_16641331_SNP [dm3] 2R_20753826_SNP [dm6]	T	A	7.568e^-5	0.338	DOWNSTREAM CG34202 INTERGENIC
2L	10129452	2L_10129452_DEL [dm3] 2L_10129452_DEL [dm6]	AAAGCACATA	A	7.585e^-5	0.338	INTRON CG44153	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8545411	2R_8545411_SNP [dm3] 2R_12657906_SNP [dm6]	A	T	7.614e^-5	0.339	SYNONYMOUS_CODING CG8646	TF binding site mE1_TFBS_cad
3L	2745018	3L_2745018_INS [dm3] 3L_2745018_INS [dm6]	A	AGAATGTGAAACATGCCTAA...	7.677e^-5	0.34	INTRON Mrtf
3R	18111531	3R_18111531_SNP [dm3] 3R_22285809_SNP [dm6]	A	G	7.693e^-5	0.34	INTRON SKIP	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18111533	3R_18111533_SNP [dm3] 3R_22285811_SNP [dm6]	A	G	7.693e^-5	0.34	INTRON SKIP	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5353786	2L_5353786_SNP [dm3] 2L_5353786_SNP [dm6]	A	T	7.774e^-5	0.343	INTRON nompC
2R	11047675	2R_11047675_SNP [dm3] 2R_15160170_SNP [dm6]	G	A	7.791e^-5	0.343	UPSTREAM CR43831 INTRON igl
3L	1780040	3L_1780040_SNP [dm3] 3L_1780040_SNP [dm6]	A	G	7.867e^-5	0.345	INTRON alpha-Spec	TF binding site mE1_TFBS_sens
3L	1404505	3L_1404505_SNP [dm3] 3L_1404505_SNP [dm6]	A	T	8.000e^-5	0.349	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	8122876	2R_8122876_SNP [dm3] 2R_12235371_SNP [dm6]	C	T	8.001e^-5	0.349	UPSTREAM CR44313 INTERGENIC
X	15861587	X_15861587_SNP [dm3] X_15967554_SNP [dm6]	T	A	8.037e^-5	0.349	INTRON mmd
2R	9275071	2R_9275071_SNP [dm3] 2R_13387566_SNP [dm6]	C	T	8.037e^-5	0.349	INTERGENIC
2L	17354616	2L_17354616_SNP [dm3] 2L_17354616_SNP [dm6]	A	G	8.086e^-5	0.351	UPSTREAM CR44345 EXON CR43239
2L	8296106	2L_8296106_SNP [dm3] 2L_8296106_SNP [dm6]	A	T	8.172e^-5	0.352	DOWNSTREAM CR43752 INTRON Btk29A	TF binding site BDTNP1_TFBS_dl
3R	25600038	3R_25600038_SNP [dm3] 3R_29774316_SNP [dm6]	G	A	8.185e^-5	0.352	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5349051	2L_5349051_SNP [dm3] 2L_5349051_SNP [dm6]	A	G	8.188e^-5	0.352	INTRON nompC
3R	9870711	3R_9870711_MNP [dm3] 3R_14044989_MNP [dm6]	ATA	GAT	8.228e^-5	0.352	UPSTREAM tRNA:S2b:88A INTERGENIC
2L	758281	2L_758281_SNP [dm3] 2L_758281_SNP [dm6]	A	T	8.300e^-5	0.352	DOWNSTREAM GABA-B-R3 INTRON GABA-B-R3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8297238	2L_8297238_SNP [dm3] 2L_8297238_SNP [dm6]	G	T	8.314e^-5	0.352	UPSTREAM Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19968324	2L_19968324_SNP [dm3] 2L_19968324_SNP [dm6]	T	C	8.318e^-5	0.352	UPSTREAM Hf DOWNSTREAM CG43861 INTERGENIC
3L	7392420	3L_7392420_SNP [dm3] 3L_7399320_SNP [dm6]	C	A	8.322e^-5	0.352	NON_SYNONYMOUS_CODING CG8562 UPSTREAM CG18417	TF binding site mE1_TFBS_cad
3R	8755108	3R_8755108_SNP [dm3] 3R_12929386_SNP [dm6]	C	A	8.323e^-5	0.352	INTRON beat-Vb
X	11188154	X_11188154_SNP [dm3] X_11294121_SNP [dm6]	G	A	8.326e^-5	0.352	UPSTREAM CG44422 INTRON CG44422	TF binding site BDTNP1_TFBS_dl
2L	1509655	2L_1509655_SNP [dm3] 2L_1509655_SNP [dm6]	C	A	8.332e^-5	0.352	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	15475221	2R_15475221_SNP [dm3] 2R_19587716_SNP [dm6]	C	G	8.377e^-5	0.353	UTR_3_PRIME CG42878 INTRON sm
3R	26373700	3R_26373700_SNP [dm3] 3R_30547978_SNP [dm6]	T	C	8.389e^-5	0.353	INTRON tmod
3L	459653	3L_459653_SNP [dm3] 3L_459653_SNP [dm6]	G	T	8.509e^-5	0.357	INTRON klar
2L	7821890	2L_7821890_SNP [dm3] 2L_7821890_SNP [dm6]	T	G	8.520e^-5	0.357	UTR_5_PRIME CG7115 UPSTREAM CR45008 INTRON CG7115	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11918820	3L_11918820_SNP [dm3] 3L_11925720_SNP [dm6]	T	A	8.616e^-5	0.359	UPSTREAM CG5718 INTRON CG44837	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	21099472	X_21099472_SNP [dm3] X_21228445_SNP [dm6]	G	T	8.617e^-5	0.359	INTRON CG32521
2L	12009736	2L_12009736_SNP [dm3] 2L_12009736_SNP [dm6]	A	T	8.632e^-5	0.359	UTR_3_PRIME Rh5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
2L	16449939	2L_16449939_SNP [dm3] 2L_16449939_SNP [dm6]	T	C	8.692e^-5	0.36	SYNONYMOUS_CODING Idgf2 UPSTREAM Idgf3
3L	3560877	3L_3560877_SNP [dm3] 3L_3560877_SNP [dm6]	C	A	8.697e^-5	0.36	INTRON Eip63E	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	11688449	X_11688449_SNP [dm3] X_11794416_SNP [dm6]	A	G	8.700e^-5	0.36	INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	13410612	2L_13410612_SNP [dm3] 2L_13410612_SNP [dm6]	T	C	8.784e^-5	0.361	SYNONYMOUS_CODING CG7110 DOWNSTREAM Vm34Ca
3L	7826547	3L_7826547_SNP [dm3] 3L_7833447_SNP [dm6]	A	C	8.785e^-5	0.361	UPSTREAM Pdp1 INTRON Pdp1
X	20899076	X_20899076_SNP [dm3] X_21028049_SNP [dm6]	G	A	8.797e^-5	0.361	DOWNSTREAM CG1529 INTRON CG1532	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	18820962	3L_18820962_SNP [dm3] 3L_18827862_SNP [dm6]	C	T	8.854e^-5	0.362	SYNONYMOUS_CODING Cat DOWNSTREAM Indy	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	18437408	2L_18437408_SNP [dm3] 2L_18437408_SNP [dm6]	A	G	8.860e^-5	0.362	INTERGENIC
X	12238793	X_12238793_DEL [dm3] X_12344760_DEL [dm6]	GG	G	8.886e^-5	0.363	INTERGENIC
2L	7802739	2L_7802739_SNP [dm3] 2L_7802739_SNP [dm6]	G	A	8.947e^-5	0.364	SYNONYMOUS_CODING cdc14 UTR_3_PRIME cdc14 DOWNSTREAM r2d2	TF binding site mE1_TFBS_cad
3L	938816	3L_938816_SNP [dm3] 3L_938816_SNP [dm6]	T	C	9.033e^-5	0.366	INTRON Glut1
2L	4568543	2L_4568543_SNP [dm3] 2L_4568543_SNP [dm6]	G	T	9.038e^-5	0.366	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	17427785	2R_17427785_SNP [dm3] 2R_21540280_SNP [dm6]	C	T	9.085e^-5	0.367	SYNONYMOUS_CODING CG30283 UPSTREAM CG33226 INTRON Egfr	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	1403271	3L_1403271_SNP [dm3] 3L_1403271_SNP [dm6]	G	A	9.086e^-5	0.367	INTRON Ptp61F
2L	19651093	2L_19651093_INS [dm3] 2L_19651093_INS [dm6]	A	AA	9.161e^-5	0.369	INTRON Lar
2R	7043352	2R_7043352_SNP [dm3] 2R_11155847_SNP [dm6]	T	G	9.192e^-5	0.369	DOWNSTREAM CG13230 INTRON CG13229
2R	4223453	2R_4223453_SNP [dm3] 2R_8335948_SNP [dm6]	T	A	9.206e^-5	0.369	INTRON pdm3
2L	2288287	2L_2288287_INS [dm3] 2L_2288287_INS [dm6]	C	CC	9.231e^-5	0.369	UPSTREAM CG42658 DOWNSTREAM CG17237 INTERGENIC
2R	17094091	2R_17094091_SNP [dm3] 2R_21206586_SNP [dm6]	G	T	9.249e^-5	0.369	INTRON CG44245 & 1 other
2L	8296100	2L_8296100_SNP [dm3] 2L_8296100_SNP [dm6]	A	T	9.295e^-5	0.37	DOWNSTREAM CR43752 INTRON Btk29A	TF binding site BDTNP1_TFBS_dl
X	11688508	X_11688508_SNP [dm3] X_11794475_SNP [dm6]	T	A	9.350e^-5	0.37	INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	12586680	2R_12586680_SNP [dm3] 2R_16699175_SNP [dm6]	A	G	9.353e^-5	0.37	INTRON CG30463
3L	6970052	3L_6970052_SNP [dm3] 3L_6976952_SNP [dm6]	C	G	9.400e^-5	0.37	INTRON Galphai EXON CR32385	TF binding site BDTNP1_TFBS_dl
2L	8441122	2L_8441122_SNP [dm3] 2L_8441122_SNP [dm6]	T	G	9.411e^-5	0.37	SYNONYMOUS_CODING mus201
3L	1098664	3L_1098664_SNP [dm3] 3L_1098664_SNP [dm6]	G	A	9.420e^-5	0.37	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7106841	2R_7106841_SNP [dm3] 2R_11219336_SNP [dm6]	A	T	9.427e^-5	0.37	UPSTREAM Syx6 & 1 other INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	7423015	3L_7423015_SNP [dm3] 3L_7429915_SNP [dm6]	T	C	9.453e^-5	0.37	INTRON CG42458	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	4568520	2L_4568520_SNP [dm3] 2L_4568520_SNP [dm6]	T	C	9.458e^-5	0.37	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8296108	2L_8296108_INS [dm3] 2L_8296108_INS [dm6]	T	TCGGTT	9.462e^-5	0.37	DOWNSTREAM CR43752 INTRON Btk29A	TF binding site BDTNP1_TFBS_dl
2R	7043262	2R_7043262_MNP [dm3] 2R_11155757_MNP [dm6]	CTG	TAA	9.559e^-5	0.371	DOWNSTREAM CG13230 INTRON CG13229
X	11188162	X_11188162_SNP [dm3] X_11294129_SNP [dm6]	C	T	9.564e^-5	0.371	UPSTREAM CG44422 INTRON CG44422	TF binding site BDTNP1_TFBS_dl
2L	11293745	2L_11293745_SNP [dm3] 2L_11293745_SNP [dm6]	A	G	9.567e^-5	0.371	INTERGENIC
2L	9646630	2L_9646630_SNP [dm3] 2L_9646630_SNP [dm6]	T	C	9.598e^-5	0.371	SYNONYMOUS_CODING Apoltp
2L	1247010	2L_1247010_SNP [dm3] 2L_1247010_SNP [dm6]	A	G	9.607e^-5	0.371	INTERGENIC
3L	1058278	3L_1058278_SNP [dm3] 3L_1058278_SNP [dm6]	A	G	9.660e^-5	0.371	INTRON bab1	TF binding site BDTNP1_TFBS_dl
2L	15406718	2L_15406718_SNP [dm3] 2L_15406718_SNP [dm6]	A	G	9.681e^-5	0.371	INTERGENIC
2L	12009362	2L_12009362_SNP [dm3] 2L_12009362_SNP [dm6]	A	G	9.691e^-5	0.371	NON_SYNONYMOUS_CODING Rh5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9081857	2L_9081857_SNP [dm3] 2L_9081857_SNP [dm6]	C	A	9.702e^-5	0.371	INTERGENIC
2L	9081859	2L_9081859_SNP [dm3] 2L_9081859_SNP [dm6]	G	T	9.702e^-5	0.371	INTERGENIC
3L	20856998	3L_20856998_SNP [dm3] 3L_20863898_SNP [dm6]	C	A	9.706e^-5	0.371	INTRON CG32432
3L	2744811	3L_2744811_SNP [dm3] 3L_2744811_SNP [dm6]	A	T	9.733e^-5	0.371	INTRON Mrtf
2L	12303140	2L_12303140_SNP [dm3] 2L_12303140_SNP [dm6]	A	T	9.785e^-5	0.372	INTRON aret	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8150635	2R_8150635_SNP [dm3] 2R_12263130_SNP [dm6]	C	G	9.905e^-5	0.376	INTRON Cam
X	9118164	X_9118164_SNP [dm3] X_9224131_SNP [dm6]	G	T	9.975e^-5	0.378	UPSTREAM t INTERGENIC
X	12576216	X_12576216_SNP [dm3] X_12682183_SNP [dm6]	T	C	1.006e^-4	0.379	UTR_3_PRIME Tis11
2L	19650888	2L_19650888_SNP [dm3] 2L_19650888_SNP [dm6]	A	G	1.017e^-4	0.379	INTRON Lar
2L	3779731	2L_3779731_SNP [dm3] 2L_3779731_SNP [dm6]	C	A	1.018e^-4	0.379	SYNONYMOUS_CODING bowl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	3017550	2R_3017550_SNP [dm3] 2R_7130045_SNP [dm6]	T	A	1.018e^-4	0.379	UPSTREAM Cyp9b1 DOWNSTREAM Cyp9b2 INTERGENIC
2L	9082683	2L_9082683_SNP [dm3] 2L_9082683_SNP [dm6]	T	C	1.019e^-4	0.379	INTERGENIC
3L	3513208	3L_3513208_SNP [dm3] 3L_3513208_SNP [dm6]	A	C	1.022e^-4	0.379	UPSTREAM ImpE2 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19398092	X_19398092_SNP [dm3] X_19504059_SNP [dm6]	G	T	1.023e^-4	0.379	UPSTREAM Pfrx INTRON Pfrx & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18111537	3R_18111537_SNP [dm3] 3R_22285815_SNP [dm6]	G	A	1.025e^-4	0.379	INTRON SKIP	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9889211	2R_9889211_SNP [dm3] 2R_14001706_SNP [dm6]	G	T	1.028e^-4	0.379	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8290292	2L_8290292_SNP [dm3] 2L_8290292_SNP [dm6]	A	G	1.030e^-4	0.379	UPSTREAM tRNA:K5:29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	1418212	2R_1418212_SNP [dm3] 2R_5530707_SNP [dm6]	T	C	1.031e^-4	0.379	INTRON CG30438	transposable element FlyBase
2L	2277569	2L_2277569_SNP [dm3] 2L_2277569_SNP [dm6]	C	G	1.033e^-4	0.379	DOWNSTREAM CR43753 INTRON CR43753
2L	7214414	2L_7214414_INS [dm3] 2L_7214414_INS [dm6]	A	AAAAAA	1.035e^-4	0.379	INTRON CG13784
3L	6970091	3L_6970091_SNP [dm3] 3L_6976991_SNP [dm6]	C	T	1.037e^-4	0.379	INTRON Galphai EXON CR32385	TF binding site BDTNP1_TFBS_dl
X	3609113	X_3609113_INS [dm3] X_3715080_INS [dm6]	T	AAC	1.037e^-4	0.379	INTRON Rala
X	11352016	X_11352016_SNP [dm3] X_11457983_SNP [dm6]	A	G	1.037e^-4	0.379	DOWNSTREAM HP5 INTRON HP5
3L	12125150	3L_12125150_SNP [dm3] 3L_12132050_SNP [dm6]	A	G	1.038e^-4	0.379	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	20017836	2L_20017836_SNP [dm3] 2L_20017836_SNP [dm6]	C	A	1.038e^-4	0.379	UPSTREAM CG43861 INTERGENIC
2R	7043242	2R_7043242_SNP [dm3] 2R_11155737_SNP [dm6]	A	G	1.039e^-4	0.379	DOWNSTREAM CG13230 INTRON CG13229
3L	11925279	3L_11925279_SNP [dm3] 3L_11932179_SNP [dm6]	A	G	1.040e^-4	0.379	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19505771	X_19505771_SNP [dm3] X_19611738_SNP [dm6]	G	C	1.046e^-4	0.38	UTR_5_PRIME Tyler & 1 other DOWNSTREAM CG14207	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11913735	2L_11913735_INS [dm3] 2L_11913735_INS [dm6]	T	TTGT	1.047e^-4	0.38	INTRON Pde1c
2R	9929263	2R_9929263_SNP [dm3] 2R_14041758_SNP [dm6]	T	C	1.050e^-4	0.38	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	10172889	3L_10172889_SNP [dm3] 3L_10179789_SNP [dm6]	A	G	1.051e^-4	0.38	INTRON dpr10
2L	17937590	2L_17937590_SNP [dm3] 2L_17937590_SNP [dm6]	T	C	1.056e^-4	0.381	INTERGENIC
2R	6309531	2R_6309531_SNP [dm3] 2R_10422026_SNP [dm6]	G	T	1.061e^-4	0.381	UTR_5_PRIME CG33474 UPSTREAM CG11825 & 1 other INTRON CG11825	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	6157868	2L_6157868_SNP [dm3] 2L_6157868_SNP [dm6]	T	C	1.062e^-4	0.381	INTERGENIC
3L	16479525	3L_16479525_SNP [dm3] 3L_16486425_SNP [dm6]	C	T	1.064e^-4	0.381	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	12233144	3L_12233144_SNP [dm3] 3L_12240044_SNP [dm6]	G	A	1.068e^-4	0.382	INTRON app
2R	1428721	2R_1428721_INS [dm3] 2R_5541216_INS [dm6]	A	AA	1.070e^-4	0.382	INTRON CG30438
X	11688453	X_11688453_SNP [dm3] X_11794420_SNP [dm6]	A	T	1.073e^-4	0.382	INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	8098793	2L_8098793_SNP [dm3] 2L_8098793_SNP [dm6]	A	C	1.077e^-4	0.382	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	11650143	3L_11650143_SNP [dm3] 3L_11657043_SNP [dm6]	A	G	1.079e^-4	0.382	DOWNSTREAM mir-274 INTRON CG32085
2R	18123398	2R_18123398_SNP [dm3] 2R_22235893_SNP [dm6]	A	C	1.081e^-4	0.382	DOWNSTREAM CR44755 INTERGENIC
3L	5699230	3L_5699230_SNP [dm3] 3L_5706130_SNP [dm6]	G	A	1.082e^-4	0.382	INTRON sif	TF binding site mE1_TFBS_cad
3L	5699232	3L_5699232_SNP [dm3] 3L_5706132_SNP [dm6]	C	T	1.082e^-4	0.382	INTRON sif	TF binding site mE1_TFBS_cad
X	4192755	X_4192755_SNP [dm3] X_4298722_SNP [dm6]	T	C	1.085e^-4	0.382	INTERGENIC
X	12823643	X_12823643_SNP [dm3] X_12929610_SNP [dm6]	G	C	1.087e^-4	0.382	INTRON fne	TF binding site BDTNP1_TFBS_dl
3R	19034796	3R_19034796_SNP [dm3] 3R_23209074_SNP [dm6]	G	A	1.091e^-4	0.383	INTRON cnc
2R	16641325	2R_16641325_SNP [dm3] 2R_20753820_SNP [dm6]	C	A	1.095e^-4	0.383	DOWNSTREAM CG34202 INTERGENIC
2R	11851404	2R_11851404_SNP [dm3] 2R_15963899_SNP [dm6]	G	C	1.097e^-4	0.383	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
2L	18322524	2L_18322524_SNP [dm3] 2L_18322524_SNP [dm6]	T	C	1.098e^-4	0.383	INTRON Fas3	TF binding site BDTNP1_TFBS_twi
2R	14844467	2R_14844467_SNP [dm3] 2R_18956962_SNP [dm6]	C	T	1.099e^-4	0.383	SYNONYMOUS_CODING sano	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8867597	3L_8867597_SNP [dm3] 3L_8874497_SNP [dm6]	C	T	1.102e^-4	0.383	INTRON dally
2R	6863854	2R_6863854_SNP [dm3] 2R_10976349_SNP [dm6]	T	A	1.106e^-4	0.383	INTERGENIC
2L	22147562	2L_22147562_SNP [dm3] 2L_22147562_SNP [dm6]	G	A	1.106e^-4	0.383	INTRON CG42748
X	21089098	X_21089098_SNP [dm3] X_21218071_SNP [dm6]	A	C	1.107e^-4	0.383	SYNONYMOUS_CODING CG32523 INTRON CG32521
X	15796863	X_15796863_SNP [dm3] X_15902830_SNP [dm6]	A	G	1.112e^-4	0.383	INTRON shi
2L	8441290	2L_8441290_SNP [dm3] 2L_8441290_SNP [dm6]	C	T	1.115e^-4	0.383	SYNONYMOUS_CODING mus201
X	20861186	X_20861186_SNP [dm3] X_20990159_SNP [dm6]	T	G	1.116e^-4	0.383	INTERGENIC
3R	10747627	3R_10747627_SNP [dm3] 3R_14921905_SNP [dm6]	C	A	1.120e^-4	0.383	UTR_3_PRIME Sdr
3R	11346612	3R_11346612_SNP [dm3] 3R_15520890_SNP [dm6]	G	T	1.124e^-4	0.383	INTERGENIC
3R	25778123	3R_25778123_SNP [dm3] 3R_29952401_SNP [dm6]	A	G	1.126e^-4	0.383	INTRON TkR99D	TF binding site mE1_TFBS_chinmo
X	17189321	X_17189321_SNP [dm3] X_17295288_SNP [dm6]	C	T	1.129e^-4	0.383	UTR_5_PRIME Fim INTRON CG5445 & 1 other
X	17203440	X_17203440_SNP [dm3] X_17309407_SNP [dm6]	G	T	1.129e^-4	0.383	INTERGENIC
X	5826946	X_5826946_SNP [dm3] X_5932913_SNP [dm6]	A	G	1.129e^-4	0.383	INTRON CG3726
2L	14858830	2L_14858830_SNP [dm3] 2L_14858830_SNP [dm6]	G	A	1.130e^-4	0.383	INTERGENIC
3R	17298949	3R_17298949_SNP [dm3] 3R_21473227_SNP [dm6]	G	T	1.131e^-4	0.383	INTERGENIC
2R	9224934	2R_9224934_SNP [dm3] 2R_13337429_SNP [dm6]	C	T	1.138e^-4	0.384	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	3860308	3L_3860308_SNP [dm3] 3L_3860308_SNP [dm6]	C	G	1.143e^-4	0.384	SYNONYMOUS_CODING Awh
2R	10590170	2R_10590170_SNP [dm3] 2R_14702665_SNP [dm6]	C	T	1.144e^-4	0.384	INTRON mspo
2L	9646948	2L_9646948_SNP [dm3] 2L_9646948_SNP [dm6]	A	C	1.145e^-4	0.384	SPLICE_SITE_REGION Apoltp INTRON Apoltp
3L	7480650	3L_7480650_SNP [dm3] 3L_7487550_SNP [dm6]	T	A	1.146e^-4	0.384	SPLICE_SITE_REGION mthl6 INTRON mthl6
2R	10096695	2R_10096695_SNP [dm3] 2R_14209190_SNP [dm6]	G	A	1.148e^-4	0.384	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	10478469	2R_10478469_SNP [dm3] 2R_14590964_SNP [dm6]	C	T	1.148e^-4	0.384	UPSTREAM CG12869 INTERGENIC	TF binding site mE1_TFBS_inv
3L	13344942	3L_13344942_SNP [dm3] 3L_13351842_SNP [dm6]	G	A	1.154e^-4	0.385	SYNONYMOUS_CODING CG17687
2L	2277595	2L_2277595_SNP [dm3] 2L_2277595_SNP [dm6]	T	C	1.154e^-4	0.385	DOWNSTREAM CR43753 INTRON CR43753
2L	1507581	2L_1507581_SNP [dm3] 2L_1507581_SNP [dm6]	T	A	1.158e^-4	0.385	INTERGENIC
3R	25862720	3R_25862720_INS [dm3] 3R_30036998_INS [dm6]	T	TAAAT	1.166e^-4	0.387	UPSTREAM CG7928 DOWNSTREAM ocn & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	423046	3L_423046_SNP [dm3] 3L_423046_SNP [dm6]	G	A	1.166e^-4	0.387	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	1528923	3L_1528923_SNP [dm3] 3L_1528923_SNP [dm6]	G	T	1.170e^-4	0.387	DOWNSTREAM Ir62a INTRON CG12090
2R	6588010	2R_6588010_SNP [dm3] 2R_10700505_SNP [dm6]	T	A	1.171e^-4	0.387	INTRON stan
X	5479545	X_5479545_SNP [dm3] X_5585512_SNP [dm6]	C	T	1.175e^-4	0.388	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2732512	3L_2732512_SNP [dm3] 3L_2732512_SNP [dm6]	C	T	1.179e^-4	0.388	INTRON Mrtf
3L	662270	3L_662270_SNP [dm3] 3L_662270_SNP [dm6]	C	A	1.186e^-4	0.39	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14667091	2R_14667091_SNP [dm3] 2R_18779586_SNP [dm6]	C	T	1.188e^-4	0.39	INTERGENIC
2L	19949083	2L_19949083_SNP [dm3] 2L_19949083_SNP [dm6]	A	G	1.192e^-4	0.39	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	419002	3L_419002_SNP [dm3] 3L_419002_SNP [dm6]	A	C	1.198e^-4	0.391	INTERGENIC
2L	6822449	2L_6822449_SNP [dm3] 2L_6822449_SNP [dm6]	C	T	1.202e^-4	0.391	UTR_5_PRIME sens-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12576204	X_12576204_SNP [dm3] X_12682171_SNP [dm6]	G	A	1.203e^-4	0.391	UTR_3_PRIME Tis11
2L	19946351	2L_19946351_SNP [dm3] 2L_19946351_SNP [dm6]	C	A	1.210e^-4	0.391	SYNONYMOUS_CODING sick INTRON sick	TF binding site mE1_TFBS_chinmo
2R	14965778	2R_14965778_SNP [dm3] 2R_19078273_SNP [dm6]	A	G	1.210e^-4	0.391	INTRON 5-HT1A
2L	4774905	2L_4774905_SNP [dm3] 2L_4774905_SNP [dm6]	C	A	1.213e^-4	0.391	INTRON CG15630
2R	19527622	2R_19527622_SNP [dm3] 2R_23640099_SNP [dm6]	C	T	1.215e^-4	0.391	INTRON retn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	16748837	3L_16748837_SNP [dm3] 3L_16755737_SNP [dm6]	C	T	1.215e^-4	0.391	DOWNSTREAM CG42852 INTERGENIC
3R	20008236	3R_20008236_SNP [dm3] 3R_24182514_SNP [dm6]	C	G	1.215e^-4	0.391	INTRON CG13606	TF binding site mE1_TFBS_chinmo
3L	8721188	3L_8721188_SNP [dm3] 3L_8728088_SNP [dm6]	G	A	1.219e^-4	0.391	UPSTREAM Cp15 DOWNSTREAM Cp18 INTERGENIC
2L	20336415	2L_20336415_SNP [dm3] 2L_20336415_SNP [dm6]	C	G	1.219e^-4	0.391	INTRON spir
2L	4498753	2L_4498753_SNP [dm3] 2L_4498753_SNP [dm6]	T	A	1.221e^-4	0.391	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17298855	3R_17298855_SNP [dm3] 3R_21473133_SNP [dm6]	C	T	1.223e^-4	0.391	INTERGENIC
3L	8438042	3L_8438042_SNP [dm3] 3L_8444942_SNP [dm6]	C	A	1.224e^-4	0.391	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17298835	3R_17298835_SNP [dm3] 3R_21473113_SNP [dm6]	T	A	1.230e^-4	0.391	INTERGENIC
2R	3022745	2R_3022745_DEL [dm3] 2R_7135240_DEL [dm6]	AA	A	1.232e^-4	0.391	DOWNSTREAM CR44443 INTERGENIC
2R	3022794	2R_3022794_SNP [dm3] 2R_7135289_SNP [dm6]	T	C	1.232e^-4	0.391	DOWNSTREAM CR44443 INTERGENIC
2R	3022809	2R_3022809_SNP [dm3] 2R_7135304_SNP [dm6]	C	G	1.232e^-4	0.391	DOWNSTREAM CR44443 INTERGENIC
3L	14660404	3L_14660404_SNP [dm3] 3L_14667304_SNP [dm6]	C	T	1.242e^-4	0.394	SYNONYMOUS_CODING dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9452453	2R_9452453_SNP [dm3] 2R_13564948_SNP [dm6]	G	A	1.244e^-4	0.394	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	18111518	3R_18111518_SNP [dm3] 3R_22285796_SNP [dm6]	G	T	1.250e^-4	0.395	INTRON SKIP	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19021410	3R_19021410_SNP [dm3] 3R_23195688_SNP [dm6]	G	A	1.256e^-4	0.395	INTRON cnc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9929265	2R_9929265_INS [dm3] 2R_14041760_INS [dm6]	G	GAT	1.258e^-4	0.395	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	19987869	2L_19987869_SNP [dm3] 2L_19987869_SNP [dm6]	C	T	1.260e^-4	0.395	INTRON CG43861
3L	8355507	3L_8355507_SNP [dm3] 3L_8362407_SNP [dm6]	C	T	1.261e^-4	0.395	INTERGENIC
X	17095568	X_17095568_SNP [dm3] X_17201535_SNP [dm6]	A	G	1.263e^-4	0.395	DOWNSTREAM baz INTRON CG8918
2L	7251698	2L_7251698_SNP [dm3] 2L_7251698_SNP [dm6]	A	C	1.266e^-4	0.395	STOP_GAINED CG13786	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	14943493	3R_14943493_SNP [dm3] 3R_19117771_SNP [dm6]	T	C	1.267e^-4	0.395	INTRON CG6040
X	14867677	X_14867677_SNP [dm3] X_14973644_SNP [dm6]	C	A	1.276e^-4	0.396	INTRON eag
X	14867871	X_14867871_SNP [dm3] X_14973838_SNP [dm6]	A	G	1.276e^-4	0.396	INTRON eag
X	14868628	X_14868628_SNP [dm3] X_14974595_SNP [dm6]	C	T	1.276e^-4	0.396	INTRON eag
X	4730460	X_4730460_SNP [dm3] X_4836427_SNP [dm6]	T	C	1.278e^-4	0.396	INTERGENIC
2L	4185896	2L_4185896_SNP [dm3] 2L_4185896_SNP [dm6]	A	G	1.290e^-4	0.399	DOWNSTREAM CG31961 EXON CR44057	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1345220	2R_1345220_SNP [dm3] 2R_5457715_SNP [dm6]	A	C	1.294e^-4	0.4	INTERGENIC	transposable element FlyBase
2R	15433939	2R_15433939_SNP [dm3] 2R_19546434_SNP [dm6]	A	G	1.296e^-4	0.4	INTRON sm	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	4733157	2R_4733157_SNP [dm3] 2R_8845652_SNP [dm6]	G	A	1.298e^-4	0.4	INTRON sns
2L	13316879	2L_13316879_SNP [dm3] 2L_13316879_SNP [dm6]	A	G	1.317e^-4	0.404	INTRON CG43778
2L	8335658	2L_8335658_SNP [dm3] 2L_8335658_SNP [dm6]	T	G	1.322e^-4	0.404	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4135985	2L_4135985_SNP [dm3] 2L_4135985_SNP [dm6]	G	A	1.324e^-4	0.404	INTERGENIC
2R	8734763	2R_8734763_SNP [dm3] 2R_12847258_SNP [dm6]	T	C	1.324e^-4	0.404	UPSTREAM CG17575 & 1 other DOWNSTREAM CG30486 INTRON antr
3L	6969679	3L_6969679_SNP [dm3] 3L_6976579_SNP [dm6]	G	A	1.327e^-4	0.404	INTRON Galphai EXON CR32385	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13622191	2L_13622191_DEL [dm3] 2L_13622191_DEL [dm6]	CTGCACAAAGATTCTCACTC...	C	1.328e^-4	0.404	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	13316929	2L_13316929_DEL [dm3] 2L_13316929_DEL [dm6]	CCGTTGCACGTGATGCACCC...	C	1.328e^-4	0.404	INTRON CG43778
2L	11871456	2L_11871456_SNP [dm3] 2L_11871456_SNP [dm6]	G	A	1.329e^-4	0.404	INTRON Pde1c
2L	11907099	2L_11907099_SNP [dm3] 2L_11907099_SNP [dm6]	T	A	1.334e^-4	0.404	INTRON Pde1c
2L	8098931	2L_8098931_SNP [dm3] 2L_8098931_SNP [dm6]	T	A	1.336e^-4	0.404	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	9730217	3L_9730217_SNP [dm3] 3L_9737117_SNP [dm6]	T	G	1.337e^-4	0.404	INTRON CG42268	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3962796	3R_3962796_SNP [dm3] 3R_8137074_SNP [dm6]	C	T	1.342e^-4	0.404	INTERGENIC
2R	14861531	2R_14861531_SNP [dm3] 2R_18974026_SNP [dm6]	T	C	1.344e^-4	0.404	NON_SYNONYMOUS_CODING Topors	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9708971	3L_9708971_SNP [dm3] 3L_9715871_SNP [dm6]	C	G	1.345e^-4	0.404	SYNONYMOUS_CODING vsg UPSTREAM snmRNA:838
2L	758274	2L_758274_SNP [dm3] 2L_758274_SNP [dm6]	A	T	1.345e^-4	0.404	DOWNSTREAM GABA-B-R3 INTRON GABA-B-R3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15400380	2L_15400380_SNP [dm3] 2L_15400380_SNP [dm6]	G	T	1.348e^-4	0.404	UPSTREAM CR44860 EXON CR45374
3L	938794	3L_938794_SNP [dm3] 3L_938794_SNP [dm6]	A	G	1.348e^-4	0.404	INTRON Glut1
3L	7658326	3L_7658326_SNP [dm3] 3L_7665226_SNP [dm6]	C	T	1.350e^-4	0.404	NON_SYNONYMOUS_CODING CG44195 UTR_3_PRIME Ank2 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
2R	18450039	2R_18450039_SNP [dm3] 2R_22562534_SNP [dm6]	G	A	1.358e^-4	0.404	SYNONYMOUS_CODING CG11362 UPSTREAM px DOWNSTREAM dnr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2040314	2L_2040314_SNP [dm3] 2L_2040314_SNP [dm6]	G	A	1.359e^-4	0.404	SYNONYMOUS_CODING Su_dx_	TF binding site mE1_TFBS_cad
2L	2040499	2L_2040499_SNP [dm3] 2L_2040499_SNP [dm6]	G	A	1.359e^-4	0.404	SYNONYMOUS_CODING Su_dx_	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12060324	3L_12060324_SNP [dm3] 3L_12067224_SNP [dm6]	A	C	1.359e^-4	0.404	DOWNSTREAM Sema-5c INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3R	9702625	3R_9702625_SNP [dm3] 3R_13876903_SNP [dm6]	A	T	1.363e^-4	0.404	INTRON E5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	938815	3L_938815_SNP [dm3] 3L_938815_SNP [dm6]	T	G	1.365e^-4	0.404	INTRON Glut1
2R	6747217	2R_6747217_SNP [dm3] 2R_10859712_SNP [dm6]	T	A	1.366e^-4	0.404	INTRON CG30015 EXON CR44302	TF binding site BDTNP1_TFBS_dl
X	3230710	X_3230710_SNP [dm3] X_3336677_SNP [dm6]	T	G	1.378e^-4	0.407	INTRON CR44886 & 1 other
2L	16449755	2L_16449755_SNP [dm3] 2L_16449755_SNP [dm6]	A	G	1.385e^-4	0.407	INTRON Idgf2
2L	21586371	2L_21586371_SNP [dm3] 2L_21586371_SNP [dm6]	C	A	1.388e^-4	0.407	INTRON nompB
3L	9720812	3L_9720812_SNP [dm3] 3L_9727712_SNP [dm6]	A	G	1.389e^-4	0.407	INTRON Naa60	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6747646	2R_6747646_SNP [dm3] 2R_10860141_SNP [dm6]	C	A	1.389e^-4	0.407	INTRON CG30015 EXON CR44302	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6642044	2R_6642044_SNP [dm3] 2R_10754539_SNP [dm6]	C	G	1.391e^-4	0.407	INTRON CG33144
2L	20016693	2L_20016693_SNP [dm3] 2L_20016693_SNP [dm6]	A	G	1.393e^-4	0.407	INTRON CG43861
2R	774997	2R_774997_SNP [dm3] 2R_4887492_SNP [dm6]	A	G	1.402e^-4	0.409	INTERGENIC
2L	20002882	2L_20002882_SNP [dm3] 2L_20002882_SNP [dm6]	C	T	1.404e^-4	0.409	INTRON CG43861
X	4719928	X_4719928_SNP [dm3] X_4825895_SNP [dm6]	T	C	1.410e^-4	0.411	UPSTREAM CG12682 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2840501	3L_2840501_SNP [dm3] 3L_2840501_SNP [dm6]	A	G	1.427e^-4	0.414	INTRON CG43444
2L	10297493	2L_10297493_SNP [dm3] 2L_10297493_SNP [dm6]	T	C	1.436e^-4	0.414	NON_SYNONYMOUS_CODING CYLD UPSTREAM CR44968	TF binding site mE1_TFBS_sens
3L	16412642	3L_16412642_SNP [dm3] 3L_16419542_SNP [dm6]	C	T	1.436e^-4	0.414	UPSTREAM CG33158 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	16412732	3L_16412732_SNP [dm3] 3L_16419632_SNP [dm6]	G	A	1.436e^-4	0.414	UTR_5_PRIME CG33158 UPSTREAM Aats-tyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	2766672	X_2766672_SNP [dm3] X_2872639_SNP [dm6]	G	A	1.436e^-4	0.414	NON_SYNONYMOUS_CODING CG14416 INTRON kirre
X	10123239	X_10123239_SNP [dm3] X_10229206_SNP [dm6]	T	C	1.440e^-4	0.414	SYNONYMOUS_CODING CG34408	TF binding site BDTNP1_TFBS_twi
3L	1531446	3L_1531446_SNP [dm3] 3L_1531446_SNP [dm6]	C	T	1.448e^-4	0.414	SYNONYMOUS_CODING CG12090 UPSTREAM Ir62a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14709879	2L_14709879_SNP [dm3] 2L_14709879_SNP [dm6]	T	A	1.448e^-4	0.414	INTERGENIC
2R	1323971	2R_1323971_INS [dm3] 2R_5436466_INS [dm6]	G	GGTAG	1.451e^-4	0.414	INTRON laccase2
3R	25599788	3R_25599788_SNP [dm3] 3R_29774066_SNP [dm6]	T	C	1.456e^-4	0.414	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11648748	3L_11648748_SNP [dm3] 3L_11655648_SNP [dm6]	G	A	1.458e^-4	0.414	INTRON CG32085
3L	16725561	3L_16725561_SNP [dm3] 3L_16732461_SNP [dm6]	T	C	1.459e^-4	0.414	INTERGENIC
2L	17774908	2L_17774908_SNP [dm3] 2L_17774908_SNP [dm6]	A	G	1.461e^-4	0.414	INTRON CadN
2R	3016641	2R_3016641_SNP [dm3] 2R_7129136_SNP [dm6]	G	T	1.467e^-4	0.414	NON_SYNONYMOUS_CODING Cyp9b1
2R	3017223	2R_3017223_SNP [dm3] 2R_7129718_SNP [dm6]	C	T	1.467e^-4	0.414	STOP_GAINED Cyp9b1 DOWNSTREAM Cyp9b2
2R	3017318	2R_3017318_SNP [dm3] 2R_7129813_SNP [dm6]	A	T	1.467e^-4	0.414	UPSTREAM Cyp9b1 DOWNSTREAM Cyp9b2 INTERGENIC
2R	3017426	2R_3017426_SNP [dm3] 2R_7129921_SNP [dm6]	T	C	1.467e^-4	0.414	UPSTREAM Cyp9b1 DOWNSTREAM Cyp9b2 INTERGENIC
2R	3017443	2R_3017443_SNP [dm3] 2R_7129938_SNP [dm6]	A	G	1.467e^-4	0.414	UPSTREAM Cyp9b1 DOWNSTREAM Cyp9b2 INTERGENIC
2R	3017454	2R_3017454_SNP [dm3] 2R_7129949_SNP [dm6]	G	C	1.467e^-4	0.414	UPSTREAM Cyp9b1 DOWNSTREAM Cyp9b2 INTERGENIC
3R	18111513	3R_18111513_SNP [dm3] 3R_22285791_SNP [dm6]	C	G	1.468e^-4	0.414	INTRON SKIP	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16641595	2R_16641595_SNP [dm3] 2R_20754090_SNP [dm6]	G	A	1.469e^-4	0.414	DOWNSTREAM CG34202 INTERGENIC
3L	3119552	3L_3119552_SNP [dm3] 3L_3119552_SNP [dm6]	A	G	1.474e^-4	0.415	SPLICE_SITE_REGION prominin-like INTRON prominin-like
2L	21030418	2L_21030418_DEL [dm3] 2L_21030418_DEL [dm6]	AA	A	1.476e^-4	0.415	INTRON CG42238	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2R	2572886	2R_2572886_SNP [dm3] 2R_6685381_SNP [dm6]	G	A	1.478e^-4	0.415	SYNONYMOUS_CODING Tdc2 DOWNSTREAM CG15909 INTRON CG9422
X	5011636	X_5011636_SNP [dm3] X_5117603_SNP [dm6]	C	T	1.485e^-4	0.416	INTRON rg & 1 other
2L	15400331	2L_15400331_SNP [dm3] 2L_15400331_SNP [dm6]	C	G	1.492e^-4	0.417	UPSTREAM CR44860 EXON CR45374
3L	8346732	3L_8346732_SNP [dm3] 3L_8353632_SNP [dm6]	G	T	1.497e^-4	0.417	NON_SYNONYMOUS_CODING CG17352 UTR_3_PRIME CG17352 DOWNSTREAM mir-4913	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8347643	3L_8347643_SNP [dm3] 3L_8354543_SNP [dm6]	C	T	1.497e^-4	0.417	SYNONYMOUS_CODING CG17352 UTR_3_PRIME CG17352 UPSTREAM mir-4913	TF binding site mE1_TFBS_cad
2R	1418659	2R_1418659_SNP [dm3] 2R_5531154_SNP [dm6]	A	G	1.497e^-4	0.417	INTRON CG30438	transposable element FlyBase
X	3745930	X_3745930_SNP [dm3] X_3851897_SNP [dm6]	G	A	1.500e^-4	0.417	INTRON ec	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	421934	3L_421934_SNP [dm3] 3L_421934_SNP [dm6]	T	C	1.502e^-4	0.417	INTERGENIC
X	11688497	X_11688497_SNP [dm3] X_11794464_SNP [dm6]	G	T	1.507e^-4	0.417	INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	2530908	2L_2530908_SNP [dm3] 2L_2530908_SNP [dm6]	A	G	1.508e^-4	0.417	INTERGENIC
2R	13122671	2R_13122671_SNP [dm3] 2R_17235166_SNP [dm6]	G	C	1.509e^-4	0.417	INTRON mbl	TF binding site mE1_TFBS_HSA
X	5451973	X_5451973_SNP [dm3] X_5557940_SNP [dm6]	T	C	1.514e^-4	0.418	INTRON Vsx2
3R	21331762	3R_21331762_SNP [dm3] 3R_25506040_SNP [dm6]	T	A	1.519e^-4	0.419	UPSTREAM CG5111 DOWNSTREAM CG5107 INTERGENIC
2R	14043329	2R_14043329_SNP [dm3] 2R_18155824_SNP [dm6]	C	T	1.522e^-4	0.419	INTRON lolal	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2L	20962469	2L_20962469_DEL [dm3] 2L_20962469_DEL [dm6]	TT	T	1.526e^-4	0.419	INTERGENIC
2L	10131054	2L_10131054_SNP [dm3] 2L_10131054_SNP [dm6]	G	A	1.527e^-4	0.419	INTRON CG44153
2L	1477230	2L_1477230_SNP [dm3] 2L_1477230_SNP [dm6]	A	T	1.537e^-4	0.421	INTERGENIC	TF binding site mE1_TFBS_sens
3R	10745208	3R_10745208_SNP [dm3] 3R_14919486_SNP [dm6]	A	T	1.537e^-4	0.421	INTRON Sdr
3R	14942274	3R_14942274_SNP [dm3] 3R_19116552_SNP [dm6]	A	G	1.546e^-4	0.421	INTRON CG6040
X	11582033	X_11582033_INS [dm3] X_11688000_INS [dm6]	C	CGC	1.547e^-4	0.421	INTRON bif
3L	13573518	3L_13573518_SNP [dm3] 3L_13580418_SNP [dm6]	A	T	1.549e^-4	0.421	INTRON bru-3
2R	16049378	2R_16049378_SNP [dm3] 2R_20161873_SNP [dm6]	A	G	1.550e^-4	0.421	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	12891472	3R_12891472_SNP [dm3] 3R_17065750_SNP [dm6]	T	A	1.552e^-4	0.421	INTRON Dad	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	925101	2R_925101_SNP [dm3] 2R_5037596_SNP [dm6]	G	T	1.554e^-4	0.421	INTERGENIC
2L	14713341	2L_14713341_SNP [dm3] 2L_14713341_SNP [dm6]	T	A	1.554e^-4	0.421	UPSTREAM CG34165 DOWNSTREAM CG15282 INTERGENIC
2R	16041872	2R_16041872_SNP [dm3] 2R_20154367_SNP [dm6]	A	C	1.565e^-4	0.422	INTERGENIC
2L	22110952	2L_22110952_INS [dm3] 2L_22110952_INS [dm6]	A	ACATA	1.565e^-4	0.422	DOWNSTREAM CG6675 INTERGENIC
2L	17326663	2L_17326663_SNP [dm3] 2L_17326663_SNP [dm6]	A	G	1.569e^-4	0.422	INTERGENIC
2L	17937581	2L_17937581_SNP [dm3] 2L_17937581_SNP [dm6]	A	C	1.574e^-4	0.422	INTERGENIC
3L	11698872	3L_11698872_SNP [dm3] 3L_11705772_SNP [dm6]	A	G	1.575e^-4	0.422	INTRON CG11658
2L	8810936	2L_8810936_SNP [dm3] 2L_8810936_SNP [dm6]	T	G	1.582e^-4	0.422	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	21986345	X_21986345_SNP [dm3] X_22584509_SNP [dm6]	G	A	1.583e^-4	0.422	INTRON Cda4	TF binding site BDTNP1_TFBS_sna
2R	14893426	2R_14893426_SNP [dm3] 2R_19005921_SNP [dm6]	G	A	1.587e^-4	0.422	SYNONYMOUS_CODING tn	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10684661	3R_10684661_SNP [dm3] 3R_14858939_SNP [dm6]	A	G	1.588e^-4	0.422	INTRON btsz
2L	10487588	2L_10487588_SNP [dm3] 2L_10487588_SNP [dm6]	T	C	1.591e^-4	0.422	INTRON CG7456	TF binding site mE1_TFBS_inv
3R	9870724	3R_9870724_INS [dm3] 3R_14045002_INS [dm6]	A	AGTTG	1.593e^-4	0.422	UPSTREAM tRNA:S2b:88A INTERGENIC
3R	9870726	3R_9870726_SNP [dm3] 3R_14045004_SNP [dm6]	A	G	1.593e^-4	0.422	UPSTREAM tRNA:S2b:88A INTERGENIC
3R	9870728	3R_9870728_SNP [dm3] 3R_14045006_SNP [dm6]	A	C	1.593e^-4	0.422	UPSTREAM tRNA:S2b:88A INTERGENIC
3R	9870729	3R_9870729_SNP [dm3] 3R_14045007_SNP [dm6]	A	T	1.593e^-4	0.422	UPSTREAM tRNA:S2b:88A INTERGENIC
2L	4080380	2L_4080380_SNP [dm3] 2L_4080380_SNP [dm6]	C	T	1.594e^-4	0.422	INTRON ed	TF binding site BDTNP1_TFBS_dl
3L	19376101	3L_19376101_SNP [dm3] 3L_19383001_SNP [dm6]	T	C	1.594e^-4	0.422	INTRON CG32206
X	5888408	X_5888408_SNP [dm3] X_5994375_SNP [dm6]	A	G	1.596e^-4	0.422	INTERGENIC	TF binding site mE1_TFBS_sens
2L	22101793	2L_22101793_SNP [dm3] 2L_22101793_SNP [dm6]	C	G	1.601e^-4	0.422	DOWNSTREAM CG31703 INTERGENIC
3R	3994932	3R_3994932_SNP [dm3] 3R_8169210_SNP [dm6]	G	T	1.602e^-4	0.422	INTRON grn
3R	27620839	3R_27620839_SNP [dm3] 3R_31795117_SNP [dm6]	G	A	1.603e^-4	0.422	SYNONYMOUS_CODING Acf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14764769	2L_14764769_SNP [dm3] 2L_14764769_SNP [dm6]	C	T	1.607e^-4	0.422	DOWNSTREAM CSN1a INTERGENIC
2R	16829646	2R_16829646_SNP [dm3] 2R_20942141_SNP [dm6]	C	G	1.609e^-4	0.422	INTERGENIC
2L	11291163	2L_11291163_SNP [dm3] 2L_11291163_SNP [dm6]	A	T	1.612e^-4	0.422	UPSTREAM CR43409 INTERGENIC
2L	19258976	2L_19258976_SNP [dm3] 2L_19258976_SNP [dm6]	T	G	1.621e^-4	0.423	DOWNSTREAM CG31797 INTERGENIC
2L	19259008	2L_19259008_SNP [dm3] 2L_19259008_SNP [dm6]	G	A	1.621e^-4	0.423	DOWNSTREAM CG31797 INTERGENIC
2R	9775008	2R_9775008_SNP [dm3] 2R_13887503_SNP [dm6]	A	T	1.624e^-4	0.424	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
3R	23205887	3R_23205887_SNP [dm3] 3R_27380165_SNP [dm6]	T	G	1.628e^-4	0.424	UTR_3_PRIME side INTRON side
2R	16326298	2R_16326298_SNP [dm3] 2R_20438793_SNP [dm6]	A	G	1.631e^-4	0.424	INTRON CG12484
X	11549207	X_11549207_SNP [dm3] X_11655174_SNP [dm6]	A	T	1.642e^-4	0.425	INTRON Ptp10D
2R	12465978	2R_12465978_SNP [dm3] 2R_16578473_SNP [dm6]	A	T	1.647e^-4	0.425	UPSTREAM Cdk4 INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	10854669	3R_10854669_INS [dm3] 3R_15028947_INS [dm6]	T	TA	1.649e^-4	0.425	INTERGENIC
3L	17298273	3L_17298273_SNP [dm3] 3L_17305173_SNP [dm6]	C	T	1.655e^-4	0.425	INTERGENIC
3L	17298895	3L_17298895_SNP [dm3] 3L_17305795_SNP [dm6]	C	G	1.655e^-4	0.425	INTERGENIC
2L	17179679	2L_17179679_SNP [dm3] 2L_17179679_SNP [dm6]	A	G	1.657e^-4	0.425	SYNONYMOUS_CODING Gr36b UPSTREAM Gr36c
3L	16078609	3L_16078609_SNP [dm3] 3L_16085509_SNP [dm6]	A	G	1.658e^-4	0.425	UTR_3_PRIME Taspase1 DOWNSTREAM Taspase1 & 1 other
X	19430347	X_19430347_INS [dm3] X_19536314_INS [dm6]	C	CGCCC	1.660e^-4	0.425	INTRON CG32532
2R	10478545	2R_10478545_SNP [dm3] 2R_14591040_SNP [dm6]	T	A	1.661e^-4	0.425	UPSTREAM CG12869 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10478610	2R_10478610_INS [dm3] 2R_14591105_INS [dm6]	T	TT	1.661e^-4	0.425	UPSTREAM CG12869 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8190495	2R_8190495_SNP [dm3] 2R_12302990_SNP [dm6]	C	G	1.663e^-4	0.425	NON_SYNONYMOUS_CODING SIP2 UTR_3_PRIME SIP2 UPSTREAM CG8850
2R	15433911	2R_15433911_SNP [dm3] 2R_19546406_SNP [dm6]	T	C	1.663e^-4	0.425	INTRON sm	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	9702489	3R_9702489_SNP [dm3] 3R_13876767_SNP [dm6]	C	G	1.665e^-4	0.425	INTRON E5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	11482652	3L_11482652_SNP [dm3] 3L_11489552_SNP [dm6]	C	G	1.671e^-4	0.426	INTRON chrb	TF binding site BDTNP1_TFBS_dl
2L	7216531	2L_7216531_SNP [dm3] 2L_7216531_SNP [dm6]	G	T	1.671e^-4	0.426	INTRON CG13784
2L	11291266	2L_11291266_SNP [dm3] 2L_11291266_SNP [dm6]	T	G	1.679e^-4	0.427	UPSTREAM CR43409 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12661156	2L_12661156_SNP [dm3] 2L_12661156_SNP [dm6]	T	C	1.681e^-4	0.427	INTRON pdm2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9082462	2L_9082462_SNP [dm3] 2L_9082462_SNP [dm6]	T	C	1.682e^-4	0.427	INTERGENIC
2L	10833891	2L_10833891_SNP [dm3] 2L_10833891_SNP [dm6]	C	A	1.687e^-4	0.428	INTRON Nos
X	22074123	X_22074123_DEL [dm3] X_22672287_DEL [dm6]	AAGCGTTTCCGACCAGT...	A	1.689e^-4	0.428	INTRON CR44997	transposable element FlyBase
2L	8847068	2L_8847068_SNP [dm3] 2L_8847068_SNP [dm6]	C	T	1.695e^-4	0.428	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	6305373	2R_6305373_SNP [dm3] 2R_10417868_SNP [dm6]	T	G	1.699e^-4	0.429	UPSTREAM CG42732 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	20764739	X_20764739_SNP [dm3] X_20893712_SNP [dm6]	A	T	1.702e^-4	0.429	INTRON shakB
X	11695158	X_11695158_SNP [dm3] X_11801125_SNP [dm6]	C	G	1.713e^-4	0.431	UTR_3_PRIME CkIIbeta DOWNSTREAM Hsc70-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12444604	X_12444604_SNP [dm3] X_12550571_SNP [dm6]	C	T	1.720e^-4	0.432	INTRON CG43921	TF binding site mE1_TFBS_HSA
3L	11698950	3L_11698950_SNP [dm3] 3L_11705850_SNP [dm6]	A	G	1.723e^-4	0.432	INTRON CG11658
X	14767662	X_14767662_SNP [dm3] X_14873629_SNP [dm6]	T	C	1.729e^-4	0.433	INTRON Flo2
2L	4873016	2L_4873016_SNP [dm3] 2L_4873016_SNP [dm6]	T	C	1.733e^-4	0.434	INTRON pog
3R	10299141	3R_10299141_INS [dm3] 3R_14473419_INS [dm6]	G	GTTG	1.736e^-4	0.434	INTRON cv-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	21988750	X_21988750_SNP [dm3] X_22586914_SNP [dm6]	C	T	1.739e^-4	0.434	INTRON Cda4	TF binding site BDTNP1_TFBS_dl
3R	21331751	3R_21331751_SNP [dm3] 3R_25506029_SNP [dm6]	A	C	1.741e^-4	0.434	UPSTREAM CG5111 DOWNSTREAM CG5107 INTERGENIC
X	13544927	X_13544927_SNP [dm3] X_13650894_SNP [dm6]	A	T	1.755e^-4	0.436	INTRON NFAT	TF binding site mE1_TFBS_HSA
X	13544934	X_13544934_SNP [dm3] X_13650901_SNP [dm6]	T	C	1.755e^-4	0.436	INTRON NFAT	TF binding site mE1_TFBS_HSA
X	13544936	X_13544936_SNP [dm3] X_13650903_SNP [dm6]	T	C	1.755e^-4	0.436	INTRON NFAT	TF binding site mE1_TFBS_HSA
3L	8754753	3L_8754753_SNP [dm3] 3L_8761653_SNP [dm6]	T	C	1.760e^-4	0.436	SYNONYMOUS_CODING Fhos START_GAINED Fhos UTR_5_PRIME Fhos	TF binding site mE1_TFBS_inv
3R	14839741	3R_14839741_DEL [dm3] 3R_19014019_DEL [dm6]	CC	C	1.761e^-4	0.436	INTRON gukh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	6529511	2R_6529511_SNP [dm3] 2R_10642006_SNP [dm6]	G	T	1.766e^-4	0.437	UTR_3_PRIME Git DOWNSTREAM CG11883
X	21974662	X_21974662_SNP [dm3] X_22572826_SNP [dm6]	C	T	1.776e^-4	0.439	INTERGENIC
3L	14052948	3L_14052948_SNP [dm3] 3L_14059848_SNP [dm6]	A	G	1.779e^-4	0.439	INTRON CG32138
2L	14226734	2L_14226734_SNP [dm3] 2L_14226734_SNP [dm6]	C	G	1.783e^-4	0.439	INTRON Dyrk2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	2288314	2L_2288314_SNP [dm3] 2L_2288314_SNP [dm6]	T	A	1.785e^-4	0.439	UPSTREAM CG42658 DOWNSTREAM CG17237 INTERGENIC
3R	10866959	3R_10866959_SNP [dm3] 3R_15041237_SNP [dm6]	G	T	1.786e^-4	0.439	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14709877	2L_14709877_SNP [dm3] 2L_14709877_SNP [dm6]	G	T	1.790e^-4	0.439	INTERGENIC
3L	3514120	3L_3514120_SNP [dm3] 3L_3514120_SNP [dm6]	G	A	1.805e^-4	0.442	INTERGENIC
3L	12307455	3L_12307455_DEL [dm3] 3L_12314355_DEL [dm6]	CAGGCCGCTGGCTGTGAGTC...	C	1.807e^-4	0.442	INTERGENIC	regulatory region REDfly_CRMs
2L	4172638	2L_4172638_SNP [dm3] 2L_4172638_SNP [dm6]	C	T	1.808e^-4	0.442	INTERGENIC
3L	1903351	3L_1903351_SNP [dm3] 3L_1903351_SNP [dm6]	A	G	1.810e^-4	0.442	INTRON CG1887
2R	15299817	2R_15299817_SNP [dm3] 2R_19412312_SNP [dm6]	T	A	1.823e^-4	0.444	UPSTREAM hts INTRON hts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	21153129	X_21153129_INS [dm3] X_21282102_INS [dm6]	G	GG	1.823e^-4	0.444	UPSTREAM CG32521 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5357150	X_5357150_SNP [dm3] X_5463117_SNP [dm6]	T	C	1.824e^-4	0.444	INTRON SPR
2L	4826596	2L_4826596_SNP [dm3] 2L_4826596_SNP [dm6]	T	A	1.830e^-4	0.444	INTRON CG15628	TF binding site mE1_TFBS_cad
2L	1401871	2L_1401871_SNP [dm3] 2L_1401871_SNP [dm6]	T	G	1.830e^-4	0.444	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8303030	2L_8303030_SNP [dm3] 2L_8303030_SNP [dm6]	C	T	1.836e^-4	0.444	UPSTREAM Scgalpha & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	20583722	2L_20583722_SNP [dm3] 2L_20583722_SNP [dm6]	G	A	1.838e^-4	0.444	EXON CR44909
3L	11486774	3L_11486774_SNP [dm3] 3L_11493674_SNP [dm6]	C	T	1.839e^-4	0.444	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	17362144	2L_17362144_SNP [dm3] 2L_17362144_SNP [dm6]	A	G	1.839e^-4	0.444	DOWNSTREAM CR44346 INTERGENIC
3R	9796460	3R_9796460_DEL [dm3] 3R_13970738_DEL [dm6]	AGTCAACA	A	1.841e^-4	0.444	UPSTREAM CR43460 INTRON rdx	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3L	14661182	3L_14661182_DEL [dm3] 3L_14668082_DEL [dm6]	AAA	A	1.848e^-4	0.445	INTRON dlp
2R	9957364	2R_9957364_SNP [dm3] 2R_14069859_SNP [dm6]	C	A	1.850e^-4	0.445	SYNONYMOUS_CODING Prosap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9819842	3R_9819842_SNP [dm3] 3R_13994120_SNP [dm6]	A	T	1.852e^-4	0.445	INTRON rdx
3L	1124638	3L_1124638_SNP [dm3] 3L_1124638_SNP [dm6]	C	A	1.858e^-4	0.445	INTERGENIC	regulatory region REDfly_CRMs
3L	3902816	3L_3902816_SNP [dm3] 3L_3902816_SNP [dm6]	A	G	1.861e^-4	0.445	UPSTREAM Ubi-p63E & 1 other INTRON Ubi-p63E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	3417102	X_3417102_INS [dm3] X_3523069_INS [dm6]	T	TACGTAT	1.866e^-4	0.445	DOWNSTREAM CR44999 INTRON CG32791
3L	2278744	3L_2278744_SNP [dm3] 3L_2278744_SNP [dm6]	C	T	1.867e^-4	0.445	DOWNSTREAM yellow-g2 INTERGENIC	TF binding site mE1_TFBS_inv
2L	1998671	2L_1998671_SNP [dm3] 2L_1998671_SNP [dm6]	A	G	1.867e^-4	0.445	SYNONYMOUS_CODING CG33543
X	11695143	X_11695143_SNP [dm3] X_11801110_SNP [dm6]	T	C	1.871e^-4	0.446	UTR_3_PRIME CkIIbeta DOWNSTREAM Hsc70-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8190481	2R_8190481_SNP [dm3] 2R_12302976_SNP [dm6]	C	T	1.878e^-4	0.447	SYNONYMOUS_CODING SIP2 UTR_3_PRIME SIP2 UPSTREAM CG8850
2R	8150766	2R_8150766_SNP [dm3] 2R_12263261_SNP [dm6]	G	T	1.880e^-4	0.447	INTRON Cam
2L	3790371	2L_3790371_SNP [dm3] 2L_3790371_SNP [dm6]	C	T	1.883e^-4	0.447	INTRON CG3921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20005616	2L_20005616_SNP [dm3] 2L_20005616_SNP [dm6]	C	T	1.891e^-4	0.448	INTRON CG43861
2L	20005688	2L_20005688_SNP [dm3] 2L_20005688_SNP [dm6]	G	T	1.891e^-4	0.448	INTRON CG43861
2R	15841168	2R_15841168_INS [dm3] 2R_19953663_INS [dm6]	C	CGGTTTC	1.894e^-4	0.448	UPSTREAM CG44622 INTERGENIC
2R	16499291	2R_16499291_SNP [dm3] 2R_20611786_SNP [dm6]	T	A	1.898e^-4	0.448	INTRON Hil	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17993877	2L_17993877_SNP [dm3] 2L_17993877_SNP [dm6]	G	A	1.916e^-4	0.448	EXON CR44767
3L	2076609	3L_2076609_SNP [dm3] 3L_2076609_SNP [dm6]	G	T	1.920e^-4	0.448	INTRON sls
3L	419067	3L_419067_SNP [dm3] 3L_419067_SNP [dm6]	T	C	1.923e^-4	0.448	INTERGENIC
3L	419070	3L_419070_SNP [dm3] 3L_419070_SNP [dm6]	T	C	1.923e^-4	0.448	INTERGENIC
2R	17511000	2R_17511000_SNP [dm3] 2R_21623495_SNP [dm6]	C	T	1.923e^-4	0.448	NON_SYNONYMOUS_CODING PTP-ER	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	10284247	3R_10284247_SNP [dm3] 3R_14458525_SNP [dm6]	T	C	1.925e^-4	0.448	INTRON cv-c	TF binding site BDTNP1_TFBS_twi
2L	11499032	2L_11499032_SNP [dm3] 2L_11499032_SNP [dm6]	G	C	1.927e^-4	0.448	UPSTREAM CG6488 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5735142	3L_5735142_SNP [dm3] 3L_5742042_SNP [dm6]	C	T	1.931e^-4	0.448	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo
2L	7562039	2L_7562039_SNP [dm3] 2L_7562039_SNP [dm6]	T	C	1.933e^-4	0.448	INTRON RapGAP1
2L	1924311	2L_1924311_SNP [dm3] 2L_1924311_SNP [dm6]	G	A	1.933e^-4	0.448	INTRON CG7337
2L	12007859	2L_12007859_INS [dm3] 2L_12007859_INS [dm6]	A	AAGAA	1.933e^-4	0.448	UPSTREAM Rh5 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12007893	2L_12007893_SNP [dm3] 2L_12007893_SNP [dm6]	G	T	1.933e^-4	0.448	UPSTREAM Rh5 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20013922	2L_20013922_DEL [dm3] 2L_20013922_DEL [dm6]	TTTTT	T	1.935e^-4	0.448	INTRON CG43861
2L	20013930	2L_20013930_INS [dm3] 2L_20013930_INS [dm6]	T	TAGTAGAAGAT...	1.935e^-4	0.448	INTRON CG43861
2L	20013932	2L_20013932_SNP [dm3] 2L_20013932_SNP [dm6]	C	T	1.935e^-4	0.448	INTRON CG43861
2L	4860537	2L_4860537_SNP [dm3] 2L_4860537_SNP [dm6]	C	G	1.935e^-4	0.448	INTRON pog
3L	8346606	3L_8346606_SNP [dm3] 3L_8353506_SNP [dm6]	G	T	1.946e^-4	0.449	SYNONYMOUS_CODING CG17352 UTR_3_PRIME CG17352 DOWNSTREAM mir-4913	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7044421	2R_7044421_SNP [dm3] 2R_11156916_SNP [dm6]	T	C	1.953e^-4	0.449	INTRON CG13229
3R	18212683	3R_18212683_SNP [dm3] 3R_22386961_SNP [dm6]	G	A	1.955e^-4	0.449	SYNONYMOUS_CODING CG5379 DOWNSTREAM CG43343
2L	16850880	2L_16850880_INS [dm3] 2L_16850880_INS [dm6]	T	TTATTATAATTTAAA...	1.961e^-4	0.449	INTRON CG31810
3L	16869304	3L_16869304_SNP [dm3] 3L_16876204_SNP [dm6]	A	C	1.964e^-4	0.449	INTRON Lmpt	TF binding site mE1_TFBS_cnc
2L	10131088	2L_10131088_SNP [dm3] 2L_10131088_SNP [dm6]	G	T	1.967e^-4	0.449	INTRON CG44153
2L	10752910	2L_10752910_SNP [dm3] 2L_10752910_SNP [dm6]	T	C	1.970e^-4	0.449	INTRON CG17124	TF binding site mE1_TFBS_cad
3L	23315019	3L_23315019_SNP [dm3] 3L_23321919_SNP [dm6]	A	T	1.970e^-4	0.449	INTRON alpha-Cat	transposable element FlyBase
3R	14839864	3R_14839864_DEL [dm3] 3R_19014142_DEL [dm6]	AAAAATACAATAATATTCTC...	A	1.972e^-4	0.449	INTRON gukh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	4904934	3R_4904934_SNP [dm3] 3R_9079212_SNP [dm6]	A	C	1.972e^-4	0.449	INTRON pum
2R	15476333	2R_15476333_SNP [dm3] 2R_19588828_SNP [dm6]	A	G	1.974e^-4	0.449	INTRON sm
3R	9704688	3R_9704688_SNP [dm3] 3R_13878966_SNP [dm6]	C	A	1.974e^-4	0.449	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8281839	2L_8281839_SNP [dm3] 2L_8281839_SNP [dm6]	C	T	1.977e^-4	0.449	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5443708	3L_5443708_SNP [dm3] 3L_5450608_SNP [dm6]	G	A	1.977e^-4	0.449	INTERGENIC
2R	16741736	2R_16741736_SNP [dm3] 2R_20854231_SNP [dm6]	C	T	1.979e^-4	0.449	INTERGENIC
3L	18214252	3L_18214252_DEL [dm3] 3L_18221152_DEL [dm6]	TACAAAAATGTATCGGGAAA...	T	1.984e^-4	0.449	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11088089	X_11088089_SNP [dm3] X_11194056_SNP [dm6]	C	T	1.984e^-4	0.449	DOWNSTREAM CR44765 INTERGENIC
3L	11593326	3L_11593326_INS [dm3] 3L_11600226_INS [dm6]	GT	TATGGCTAATA...	1.986e^-4	0.449	UPSTREAM CG14137 INTRON CG7368
3R	10745190	3R_10745190_SNP [dm3] 3R_14919468_SNP [dm6]	T	A	1.988e^-4	0.449	INTRON Sdr
3L	10627362	3L_10627362_SNP [dm3] 3L_10634262_SNP [dm6]	A	C	1.989e^-4	0.449	DOWNSTREAM E_z_ & 1 other INTRON CG34001
3L	10627363	3L_10627363_SNP [dm3] 3L_10634263_SNP [dm6]	T	C	1.989e^-4	0.449	DOWNSTREAM E_z_ & 1 other INTRON CG34001
2L	7906722	2L_7906722_SNP [dm3] 2L_7906722_SNP [dm6]	T	C	1.997e^-4	0.449	INTRON Snoo
2R	17153388	2R_17153388_SNP [dm3] 2R_21265883_SNP [dm6]	T	G	1.998e^-4	0.449	SYNONYMOUS_CODING CG30391 DOWNSTREAM CG30393 INTRON Rgk3
3L	13183165	3L_13183165_SNP [dm3] 3L_13190065_SNP [dm6]	G	A	1.999e^-4	0.449	INTERGENIC
2R	9962863	2R_9962863_DEL [dm3] 2R_14075358_DEL [dm6]	CC	C	2.000e^-4	0.449	INTRON Prosap
2L	20011765	2L_20011765_SNP [dm3] 2L_20011765_SNP [dm6]	G	A	2.004e^-4	0.449	INTRON CG43861
2L	19226477	2L_19226477_SNP [dm3] 2L_19226477_SNP [dm6]	C	T	2.006e^-4	0.449	INTERGENIC
2R	15207957	2R_15207957_INS [dm3] 2R_19320452_INS [dm6]	A	ATTTACCATTACCATTACCA...	2.011e^-4	0.449	INTRON Rgk1
3R	25777615	3R_25777615_SNP [dm3] 3R_29951893_SNP [dm6]	T	G	2.013e^-4	0.449	INTRON TkR99D	TF binding site mE1_TFBS_chinmo
2L	17810064	2L_17810064_SNP [dm3] 2L_17810064_SNP [dm6]	A	C	2.014e^-4	0.449	INTRON CadN2	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17810067	2L_17810067_MNP [dm3] 2L_17810067_MNP [dm6]	TTA	AAG	2.014e^-4	0.449	INTRON CadN2	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20824759	3L_20824759_SNP [dm3] 3L_20831659_SNP [dm6]	G	C	2.015e^-4	0.449	INTRON Pka-R1
2L	13687467	2L_13687467_SNP [dm3] 2L_13687467_SNP [dm6]	A	T	2.022e^-4	0.45	INTRON CG31814
X	11549011	X_11549011_SNP [dm3] X_11654978_SNP [dm6]	T	A	2.029e^-4	0.45	INTRON Ptp10D
2L	15403534	2L_15403534_SNP [dm3] 2L_15403534_SNP [dm6]	C	T	2.033e^-4	0.451	INTERGENIC	TF binding site mE1_TFBS_cad
X	5505362	X_5505362_INS [dm3] X_5611329_INS [dm6]	A	AACA	2.036e^-4	0.451		TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	460271	3L_460271_SNP [dm3] 3L_460271_SNP [dm6]	A	G	2.040e^-4	0.451	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14851581	2R_14851581_SNP [dm3] 2R_18964076_SNP [dm6]	C	T	2.044e^-4	0.451	INTERGENIC	TF binding site mE1_TFBS_cad
2R	8150744	2R_8150744_SNP [dm3] 2R_12263239_SNP [dm6]	C	A	2.045e^-4	0.451	INTRON Cam
2R	1418633	2R_1418633_DEL [dm3] 2R_5531128_DEL [dm6]	TATGGTGTTACGCATCTTGT...	T	2.050e^-4	0.452	INTRON CG30438	transposable element FlyBase
2L	20583757	2L_20583757_SNP [dm3] 2L_20583757_SNP [dm6]	C	T	2.054e^-4	0.452	EXON CR44909
3L	20844615	3L_20844615_SNP [dm3] 3L_20851515_SNP [dm6]	G	T	2.061e^-4	0.452	INTRON CG32432
2L	10752901	2L_10752901_SNP [dm3] 2L_10752901_SNP [dm6]	G	T	2.062e^-4	0.452	INTRON CG17124	TF binding site mE1_TFBS_cad
2L	10752907	2L_10752907_SNP [dm3] 2L_10752907_SNP [dm6]	A	T	2.062e^-4	0.452	INTRON CG17124	TF binding site mE1_TFBS_cad
X	19279153	X_19279153_SNP [dm3] X_19385120_SNP [dm6]	T	C	2.065e^-4	0.453	INTRON kek5
X	6264963	X_6264963_SNP [dm3] X_6370930_SNP [dm6]	C	T	2.072e^-4	0.453	DOWNSTREAM PpV & 1 other EXON CR44816
3L	8720899	3L_8720899_SNP [dm3] 3L_8727799_SNP [dm6]	C	G	2.073e^-4	0.453	UPSTREAM Cp15 DOWNSTREAM Cp18 INTERGENIC
2L	18378423	2L_18378423_SNP [dm3] 2L_18378423_SNP [dm6]	T	G	2.075e^-4	0.453	UPSTREAM CG34171 INTRON Fas3
3L	3719873	3L_3719873_SNP [dm3] 3L_3719873_SNP [dm6]	G	T	2.075e^-4	0.453	INTRON CG32264
3R	4098055	3R_4098055_SNP [dm3] 3R_8272333_SNP [dm6]	T	C	2.082e^-4	0.454	INTERGENIC	regulatory region REDfly_CRMs
2L	18375706	2L_18375706_SNP [dm3] 2L_18375706_SNP [dm6]	T	A	2.087e^-4	0.454	INTRON Fas3
3L	18254696	3L_18254696_SNP [dm3] 3L_18261596_SNP [dm6]	A	T	2.096e^-4	0.455	INTERGENIC
3R	10746031	3R_10746031_SNP [dm3] 3R_14920309_SNP [dm6]	T	C	2.103e^-4	0.456	SPLICE_SITE_REGION Sdr INTRON Sdr
3R	10746032	3R_10746032_SNP [dm3] 3R_14920310_SNP [dm6]	C	T	2.103e^-4	0.456	SPLICE_SITE_REGION Sdr INTRON Sdr
3R	9819840	3R_9819840_SNP [dm3] 3R_13994118_SNP [dm6]	C	T	2.106e^-4	0.456	INTRON rdx
2L	19650869	2L_19650869_SNP [dm3] 2L_19650869_SNP [dm6]	T	C	2.109e^-4	0.456	INTRON Lar
2L	17601892	2L_17601892_DEL [dm3] 2L_17601892_DEL [dm6]	TTATTTTT	T	2.112e^-4	0.456	INTRON Sytalpha
2L	19276714	2L_19276714_SNP [dm3] 2L_19276714_SNP [dm6]	C	T	2.115e^-4	0.457	INTERGENIC
2R	767016	2R_767016_SNP [dm3] 2R_4879511_SNP [dm6]	C	A	2.123e^-4	0.457	INTERGENIC
2L	12202298	2L_12202298_SNP [dm3] 2L_12202298_SNP [dm6]	A	C	2.123e^-4	0.457	INTRON aret
2R	10001176	2R_10001176_SNP [dm3] 2R_14113671_SNP [dm6]	C	G	2.123e^-4	0.457	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	11083780	2L_11083780_SNP [dm3] 2L_11083780_SNP [dm6]	G	T	2.126e^-4	0.457	UTR_3_PRIME AstCC
2L	8837889	2L_8837889_DEL [dm3] 2L_8837889_DEL [dm6]	ATTGGA	A	2.129e^-4	0.457	INTERGENIC
3R	13918912	3R_13918912_SNP [dm3] 3R_18093190_SNP [dm6]	C	A	2.132e^-4	0.457	INTRON sr
2R	10096482	2R_10096482_SNP [dm3] 2R_14208977_SNP [dm6]	T	A	2.137e^-4	0.457	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10096483	2R_10096483_SNP [dm3] 2R_14208978_SNP [dm6]	A	C	2.137e^-4	0.457	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19277549	2L_19277549_SNP [dm3] 2L_19277549_SNP [dm6]	A	G	2.146e^-4	0.458	INTERGENIC
2L	3779612	2L_3779612_SNP [dm3] 2L_3779612_SNP [dm6]	G	A	2.150e^-4	0.458	INTRON bowl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	3779679	2L_3779679_SNP [dm3] 2L_3779679_SNP [dm6]	C	T	2.150e^-4	0.458	INTRON bowl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	10938214	2L_10938214_DEL [dm3] 2L_10938214_DEL [dm6]	AGACACAA	A	2.153e^-4	0.458	DOWNSTREAM CG14072 INTRON dpr2
3L	6970128	3L_6970128_SNP [dm3] 3L_6977028_SNP [dm6]	T	G	2.154e^-4	0.458	INTRON Galphai & 1 other	TF binding site BDTNP1_TFBS_dl
2L	19999651	2L_19999651_SNP [dm3] 2L_19999651_SNP [dm6]	G	A	2.155e^-4	0.458	DOWNSTREAM CR44908 INTRON CG43861
3L	10942185	3L_10942185_SNP [dm3] 3L_10949085_SNP [dm6]	C	A	2.159e^-4	0.458	INTERGENIC
X	10836394	X_10836394_SNP [dm3] X_10942361_SNP [dm6]	T	C	2.159e^-4	0.458	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
X	15273255	X_15273255_SNP [dm3] X_15379222_SNP [dm6]	T	C	2.168e^-4	0.459	UPSTREAM acj6 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2744260	3L_2744260_SNP [dm3] 3L_2744260_SNP [dm6]	C	T	2.172e^-4	0.459	INTRON Mrtf
3L	5887635	3L_5887635_SNP [dm3] 3L_5894535_SNP [dm6]	C	T	2.175e^-4	0.459	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10959869	2R_10959869_SNP [dm3] 2R_15072364_SNP [dm6]	A	C	2.183e^-4	0.459	INTERGENIC
X	12753849	X_12753849_SNP [dm3] X_12859816_SNP [dm6]	C	T	2.185e^-4	0.459	INTRON Pde9
2R	12608274	2R_12608274_SNP [dm3] 2R_16720769_SNP [dm6]	A	G	2.186e^-4	0.459	INTRON CG30463	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	15861539	X_15861539_SNP [dm3] X_15967506_SNP [dm6]	T	A	2.187e^-4	0.459	INTRON mmd
2L	8672037	2L_8672037_SNP [dm3] 2L_8672037_SNP [dm6]	C	T	2.189e^-4	0.459	UTR_3_PRIME Sema-1a UPSTREAM Glt DOWNSTREAM Sema-1a
3L	603874	3L_603874_SNP [dm3] 3L_603874_SNP [dm6]	T	C	2.192e^-4	0.459	UTR_5_PRIME CG13893	TF binding site mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9397862	2L_9397862_SNP [dm3] 2L_9397862_SNP [dm6]	T	C	2.192e^-4	0.459	UTR_5_PRIME CG4438 INTRON Shawl
X	16429742	X_16429742_SNP [dm3] X_16535709_SNP [dm6]	A	G	2.201e^-4	0.46	INTERGENIC
2R	1408999	2R_1408999_DEL [dm3] 2R_5521494_DEL [dm6]	ATTAAAT	A	2.203e^-4	0.46	INTRON CG30438	transposable element FlyBase
2L	19697420	2L_19697420_SNP [dm3] 2L_19697420_SNP [dm6]	T	C	2.207e^-4	0.461	INTRON Lar
3L	12173728	3L_12173728_SNP [dm3] 3L_12180628_SNP [dm6]	T	C	2.218e^-4	0.462	INTRON CAH2
3L	12453269	3L_12453269_SNP [dm3] 3L_12460169_SNP [dm6]	T	A	2.218e^-4	0.462	INTERGENIC
2L	19961355	2L_19961355_SNP [dm3] 2L_19961355_SNP [dm6]	G	C	2.232e^-4	0.462	UTR_3_PRIME CG42866 UPSTREAM CG34051 DOWNSTREAM CG13965
2L	17613135	2L_17613135_SNP [dm3] 2L_17613135_SNP [dm6]	G	T	2.234e^-4	0.462	INTERGENIC
2L	17215262	2L_17215262_SNP [dm3] 2L_17215262_SNP [dm6]	G	A	2.238e^-4	0.462	INTRON beat-IIIc
2L	17949057	2L_17949057_SNP [dm3] 2L_17949057_SNP [dm6]	T	C	2.240e^-4	0.462	INTRON CR44398
2R	8725129	2R_8725129_SNP [dm3] 2R_12837624_SNP [dm6]	T	C	2.246e^-4	0.462	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8725131	2R_8725131_SNP [dm3] 2R_12837626_SNP [dm6]	G	A	2.246e^-4	0.462	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5229811	3L_5229811_SNP [dm3] 3L_5236711_SNP [dm6]	C	T	2.249e^-4	0.462	DOWNSTREAM CG4669 INTRON shep
2L	16978519	2L_16978519_SNP [dm3] 2L_16978519_SNP [dm6]	G	T	2.250e^-4	0.462	INTRON beat-IIIb
2L	16979144	2L_16979144_SNP [dm3] 2L_16979144_SNP [dm6]	G	C	2.250e^-4	0.462	INTRON beat-IIIb
2L	8098939	2L_8098939_SNP [dm3] 2L_8098939_SNP [dm6]	T	C	2.254e^-4	0.462	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	18862799	3L_18862799_SNP [dm3] 3L_18869699_SNP [dm6]	C	A	2.255e^-4	0.462	SPLICE_SITE_REGION CG6852 UPSTREAM Blos3 DOWNSTREAM Dysb & 1 other INTRON CG6852	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	8127278	2R_8127278_MNP [dm3] 2R_12239773_MNP [dm6]	TTT	CAC	2.255e^-4	0.462	UPSTREAM CG13170 INTERGENIC
2R	15433913	2R_15433913_SNP [dm3] 2R_19546408_SNP [dm6]	A	T	2.256e^-4	0.462	INTRON sm	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	13923741	2L_13923741_SNP [dm3] 2L_13923741_SNP [dm6]	G	A	2.256e^-4	0.462	UPSTREAM CG16886 INTRON Ance-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11367785	2R_11367785_SNP [dm3] 2R_15480280_SNP [dm6]	T	G	2.266e^-4	0.462	INTRON CG8180	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4904930	3R_4904930_SNP [dm3] 3R_9079208_SNP [dm6]	T	C	2.266e^-4	0.462	INTRON pum
X	17095001	X_17095001_SNP [dm3] X_17200968_SNP [dm6]	A	G	2.278e^-4	0.462	SYNONYMOUS_CODING CG8918 DOWNSTREAM baz
X	4588809	X_4588809_SNP [dm3] X_4694776_SNP [dm6]	T	G	2.280e^-4	0.462	INTRON ctp	TF binding site mE1_TFBS_Trl
2L	10164300	2L_10164300_SNP [dm3] 2L_10164300_SNP [dm6]	T	A	2.282e^-4	0.462	INTRON CG44153
3L	8356802	3L_8356802_SNP [dm3] 3L_8363702_SNP [dm6]	T	C	2.284e^-4	0.462	INTERGENIC
2R	6406542	2R_6406542_SNP [dm3] 2R_10519037_SNP [dm6]	G	A	2.290e^-4	0.462	UTR_3_PRIME lola DOWNSTREAM lola INTRON lola
2L	16664355	2L_16664355_INS [dm3] 2L_16664355_INS [dm6]	A	ATTA	2.290e^-4	0.462	UTR_3_PRIME Trpgamma DOWNSTREAM Trpgamma
2R	7043337	2R_7043337_SNP [dm3] 2R_11155832_SNP [dm6]	G	A	2.297e^-4	0.462	DOWNSTREAM CG13230 INTRON CG13229
2L	17810051	2L_17810051_SNP [dm3] 2L_17810051_SNP [dm6]	C	A	2.297e^-4	0.462	INTRON CadN2	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11240917	3L_11240917_SNP [dm3] 3L_11247817_SNP [dm6]	A	T	2.297e^-4	0.462	UPSTREAM CR44717 & 1 other DOWNSTREAM CR44713 EXON CR44715	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2L	22617573	2L_22617573_SNP [dm3] 2L_22724841_SNP [dm6]	A	T	2.297e^-4	0.462	INTRON CG40006
2L	6195653	2L_6195653_SNP [dm3] 2L_6195653_SNP [dm6]	C	T	2.301e^-4	0.462	INTRON CG34380	TF binding site mE1_TFBS_chinmo
X	5044557	X_5044557_SNP [dm3] X_5150524_SNP [dm6]	C	A	2.302e^-4	0.462	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_twi
X	8131913	X_8131913_SNP [dm3] X_8237880_SNP [dm6]	T	C	2.302e^-4	0.462	SYNONYMOUS_CODING sdt
3R	3863746	3R_3863746_DEL [dm3] 3R_8038024_DEL [dm6]	ACTGG	A	2.302e^-4	0.462	UPSTREAM CR44936 INTERGENIC
2R	17382411	2R_17382411_SNP [dm3] 2R_21494906_SNP [dm6]	G	A	2.303e^-4	0.462	INTRON Fkbp14
3R	10745212	3R_10745212_SNP [dm3] 3R_14919490_SNP [dm6]	C	A	2.304e^-4	0.462	INTRON Sdr
2L	17937588	2L_17937588_SNP [dm3] 2L_17937588_SNP [dm6]	C	T	2.306e^-4	0.462	INTERGENIC
3L	6970112	3L_6970112_SNP [dm3] 3L_6977012_SNP [dm6]	C	T	2.310e^-4	0.462	INTRON Galphai & 1 other	TF binding site BDTNP1_TFBS_dl
X	21089273	X_21089273_SNP [dm3] X_21218246_SNP [dm6]	A	G	2.311e^-4	0.462	SYNONYMOUS_CODING CG32523 INTRON CG32521	TF binding site mE1_TFBS_chinmo
3L	16317342	3L_16317342_SNP [dm3] 3L_16324242_SNP [dm6]	C	G	2.312e^-4	0.462	SYNONYMOUS_CODING CG13059 DOWNSTREAM CG13040
2L	7079411	2L_7079411_SNP [dm3] 2L_7079411_SNP [dm6]	C	T	2.319e^-4	0.462	UPSTREAM CR44611 INTRON Pvf2
2R	11891614	2R_11891614_SNP [dm3] 2R_16004109_SNP [dm6]	C	A	2.319e^-4	0.462	NON_SYNONYMOUS_CODING CG8370	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	9380731	2L_9380731_SNP [dm3] 2L_9380731_SNP [dm6]	G	A	2.323e^-4	0.462	INTRON Shawl
X	4247192	X_4247192_SNP [dm3] X_4353159_SNP [dm6]	G	A	2.329e^-4	0.462	INTRON norpA
3R	12898151	3R_12898151_SNP [dm3] 3R_17072429_SNP [dm6]	G	T	2.330e^-4	0.462	SYNONYMOUS_CODING Ns1 UPSTREAM mRpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10850342	3L_10850342_SNP [dm3] 3L_10857242_SNP [dm6]	T	A	2.341e^-4	0.462	UPSTREAM tna INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	12125256	3L_12125256_DEL [dm3] 3L_12132156_DEL [dm6]	CC	C	2.341e^-4	0.462	UTR_5_PRIME CG11534 DOWNSTREAM Lsp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
X	3609158	X_3609158_SNP [dm3] X_3715125_SNP [dm6]	A	T	2.342e^-4	0.462	INTRON Rala
X	15560708	X_15560708_SNP [dm3] X_15666675_SNP [dm6]	C	A	2.344e^-4	0.462	UPSTREAM CR43299 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA transposable element FlyBase
2R	18567160	2R_18567160_SNP [dm3] 2R_22679655_SNP [dm6]	T	C	2.348e^-4	0.462	INTERGENIC
3L	2798008	3L_2798008_SNP [dm3] 3L_2798008_SNP [dm6]	C	T	2.351e^-4	0.462	INTRON CG43444
3R	9914197	3R_9914197_INS [dm3] 3R_14088475_INS [dm6]	T	TT	2.357e^-4	0.462	DOWNSTREAM foxo INTERGENIC	TF binding site mE1_TFBS_bab1
2L	13317423	2L_13317423_SNP [dm3] 2L_13317423_SNP [dm6]	G	A	2.361e^-4	0.462	INTRON CG43778
2L	13317426	2L_13317426_SNP [dm3] 2L_13317426_SNP [dm6]	T	C	2.361e^-4	0.462	INTRON CG43778
2L	13317441	2L_13317441_SNP [dm3] 2L_13317441_SNP [dm6]	A	T	2.361e^-4	0.462	INTRON CG43778
2L	13317475	2L_13317475_SNP [dm3] 2L_13317475_SNP [dm6]	C	T	2.361e^-4	0.462	INTRON CG43778
2L	13317477	2L_13317477_SNP [dm3] 2L_13317477_SNP [dm6]	G	T	2.361e^-4	0.462	INTRON CG43778
2L	13317483	2L_13317483_SNP [dm3] 2L_13317483_SNP [dm6]	G	T	2.361e^-4	0.462	INTRON CG43778
2L	13317487	2L_13317487_SNP [dm3] 2L_13317487_SNP [dm6]	G	T	2.361e^-4	0.462	INTRON CG43778
2L	13317508	2L_13317508_SNP [dm3] 2L_13317508_SNP [dm6]	C	G	2.361e^-4	0.462	INTRON CG43778
2L	13317533	2L_13317533_INS [dm3] 2L_13317533_INS [dm6]	A	ACTACTTAATATCATTAAAT...	2.361e^-4	0.462	INTRON CG43778
2L	8837963	2L_8837963_SNP [dm3] 2L_8837963_SNP [dm6]	C	T	2.362e^-4	0.462	INTERGENIC
2L	6195662	2L_6195662_SNP [dm3] 2L_6195662_SNP [dm6]	G	T	2.365e^-4	0.462	INTRON CG34380	TF binding site mE1_TFBS_chinmo
2L	17863230	2L_17863230_SNP [dm3] 2L_17863230_SNP [dm6]	C	G	2.369e^-4	0.462	INTRON CadN2
3L	6969582	3L_6969582_SNP [dm3] 3L_6976482_SNP [dm6]	C	T	2.375e^-4	0.463	INTRON Galphai EXON CR32385	TF binding site BDTNP1_TFBS_dl
3R	20997255	3R_20997255_SNP [dm3] 3R_25171533_SNP [dm6]	G	A	2.382e^-4	0.463	SYNONYMOUS_CODING lobo	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4609519	X_4609519_SNP [dm3] X_4715486_SNP [dm6]	G	A	2.382e^-4	0.463	INTRON Proc-R
2R	1264121	2R_1264121_DEL [dm3] 2R_5376616_DEL [dm6]	AGGAAACATGATCAAGTTTA...	A	2.383e^-4	0.463	INTERGENIC	transposable element FlyBase
2R	1326864	2R_1326864_SNP [dm3] 2R_5439359_SNP [dm6]	A	G	2.383e^-4	0.463	INTRON laccase2
2L	13616850	2L_13616850_SNP [dm3] 2L_13616850_SNP [dm6]	T	A	2.390e^-4	0.464	INTRON kuz
2L	12661084	2L_12661084_SNP [dm3] 2L_12661084_SNP [dm6]	A	C	2.393e^-4	0.464	INTRON pdm2	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	5886339	X_5886339_SNP [dm3] X_5992306_SNP [dm6]	C	T	2.402e^-4	0.464	UTR_3_PRIME CG5966	TF binding site mE1_TFBS_bab1
2R	15435054	2R_15435054_SNP [dm3] 2R_19547549_SNP [dm6]	A	G	2.409e^-4	0.464	UPSTREAM sm INTRON sm
3R	12898467	3R_12898467_SNP [dm3] 3R_17072745_SNP [dm6]	T	A	2.410e^-4	0.464	UTR_5_PRIME mRpS11 UPSTREAM Ns1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5359336	X_5359336_SNP [dm3] X_5465303_SNP [dm6]	G	C	2.411e^-4	0.464	INTRON SPR
2L	9224000	2L_9224000_SNP [dm3] 2L_9224000_SNP [dm6]	G	A	2.411e^-4	0.464	INTRON tai	TF binding site mE1_TFBS_Kr mE1_TFBS_Trl
2L	9224018	2L_9224018_SNP [dm3] 2L_9224018_SNP [dm6]	T	A	2.411e^-4	0.464	INTRON tai	TF binding site mE1_TFBS_Kr mE1_TFBS_Trl
3L	12173699	3L_12173699_SNP [dm3] 3L_12180599_SNP [dm6]	A	C	2.414e^-4	0.464	INTRON CAH2
3L	3902618	3L_3902618_SNP [dm3] 3L_3902618_SNP [dm6]	G	A	2.415e^-4	0.464	UTR_5_PRIME Ubi-p63E UPSTREAM Ubi-p63E & 1 other INTRON Ubi-p63E	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	21699306	2L_21699306_SNP [dm3] 2L_21699306_SNP [dm6]	T	A	2.418e^-4	0.464	INTRON CG31619	transposable element FlyBase
2L	21248694	2L_21248694_SNP [dm3] 2L_21248694_SNP [dm6]	C	G	2.421e^-4	0.464	INTRON Hr39	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10833783	X_10833783_SNP [dm3] X_10939750_SNP [dm6]	T	C	2.422e^-4	0.464	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8724226	3L_8724226_SNP [dm3] 3L_8731126_SNP [dm6]	G	A	2.425e^-4	0.464	UPSTREAM Cp16 DOWNSTREAM Cp19 INTERGENIC
X	9118050	X_9118050_SNP [dm3] X_9224017_SNP [dm6]	C	T	2.427e^-4	0.464	UPSTREAM t INTERGENIC
2R	12660810	2R_12660810_SNP [dm3] 2R_16773305_SNP [dm6]	G	A	2.436e^-4	0.465	SYNONYMOUS_CODING Sod2 UPSTREAM unc-104 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	9702871	3R_9702871_SNP [dm3] 3R_13877149_SNP [dm6]	T	C	2.438e^-4	0.465	UTR_5_PRIME E5	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	17606321	2L_17606321_SNP [dm3] 2L_17606321_SNP [dm6]	C	T	2.442e^-4	0.465	DOWNSTREAM CR44412 INTERGENIC
3L	17523106	3L_17523106_SNP [dm3] 3L_17530006_SNP [dm6]	A	T	2.442e^-4	0.465	UPSTREAM Nedd4 & 1 other EXON CR45165	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	9989607	3L_9989607_INS [dm3] 3L_9996507_INS [dm6]	C	TT	2.445e^-4	0.465	INTRON dpr6
2L	12641843	2L_12641843_SNP [dm3] 2L_12641843_SNP [dm6]	A	G	2.454e^-4	0.466	INTRON Ref2
X	16596998	X_16596998_SNP [dm3] X_16702965_SNP [dm6]	A	G	2.457e^-4	0.466	SYNONYMOUS_CODING CG9673 UPSTREAM spheroide INTRON CG4678
X	6658281	X_6658281_SNP [dm3] X_6764248_SNP [dm6]	T	A	2.459e^-4	0.466	NON_SYNONYMOUS_CODING CG14438	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17994056	2L_17994056_SNP [dm3] 2L_17994056_SNP [dm6]	T	A	2.466e^-4	0.467	EXON CR44767
3L	10530207	3L_10530207_DEL [dm3] 3L_10537107_DEL [dm6]	TAACCCCT	T	2.469e^-4	0.467	INTRON A2bp1
2L	17941498	2L_17941498_SNP [dm3] 2L_17941498_SNP [dm6]	G	A	2.474e^-4	0.467	INTERGENIC
3L	11486384	3L_11486384_SNP [dm3] 3L_11493284_SNP [dm6]	T	C	2.476e^-4	0.467	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11486441	3L_11486441_DEL [dm3] 3L_11493341_DEL [dm6]	AT	A	2.476e^-4	0.467	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12615554	2L_12615554_SNP [dm3] 2L_12615554_SNP [dm6]	G	C	2.482e^-4	0.467	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	10276001	2R_10276001_SNP [dm3] 2R_14388496_SNP [dm6]	T	G	2.488e^-4	0.467	INTERGENIC
2L	3729876	2L_3729876_SNP [dm3] 2L_3729876_SNP [dm6]	C	T	2.492e^-4	0.467	UPSTREAM CG10019 DOWNSTREAM Shaw INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	13117743	X_13117743_SNP [dm3] X_13223710_SNP [dm6]	T	C	2.493e^-4	0.467	INTRON mew	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13117747	X_13117747_SNP [dm3] X_13223714_SNP [dm6]	A	G	2.493e^-4	0.467	INTRON mew	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14838992	3R_14838992_SNP [dm3] 3R_19013270_SNP [dm6]	C	T	2.496e^-4	0.467	SYNONYMOUS_CODING gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	603540	3L_603540_SNP [dm3] 3L_603540_SNP [dm6]	G	C	2.498e^-4	0.467	START_GAINED CG13893 UTR_5_PRIME CG13893	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	13923805	2R_13923805_SNP [dm3] 2R_18036300_SNP [dm6]	G	A	2.499e^-4	0.467	INTERGENIC
3L	3462186	3L_3462186_SNP [dm3] 3L_3462186_SNP [dm6]	G	A	2.503e^-4	0.467	UTR_5_PRIME armi UPSTREAM armi
3L	9948425	3L_9948425_DEL [dm3] 3L_9955325_DEL [dm6]	AGTAATGCCAGTAATA...	A	2.506e^-4	0.467	INTRON CG34356
2R	10478674	2R_10478674_SNP [dm3] 2R_14591169_SNP [dm6]	G	T	2.506e^-4	0.467	UPSTREAM CG12869 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9082602	2L_9082602_SNP [dm3] 2L_9082602_SNP [dm6]	T	A	2.506e^-4	0.467	INTERGENIC
2L	1394784	2L_1394784_SNP [dm3] 2L_1394784_SNP [dm6]	A	T	2.508e^-4	0.467	INTRON lea	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11047185	X_11047185_SNP [dm3] X_11153152_SNP [dm6]	C	T	2.512e^-4	0.467	SYNONYMOUS_CODING rtv DOWNSTREAM Lint-1	TF binding site BDTNP1_TFBS_dl

By genomic position
Variant impact
Gene name

Microbiota_OTU025 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results