DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.501e^-15)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.08346

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

13709 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	10356404	2L_10356404_SNP [dm3] 2L_10356404_SNP [dm6]	G	T	0	0	UTR_5_PRIME CG5367 UPSTREAM CG5045	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11122621	2L_11122621_SNP [dm3] 2L_11122621_SNP [dm6]	G	T	0	0	UTR_3_PRIME Csl4 UPSTREAM CG14921	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11123623	2L_11123623_SNP [dm3] 2L_11123623_SNP [dm6]	C	T	0	0	UPSTREAM Nup160 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1145086	2L_1145086_SNP [dm3] 2L_1145086_SNP [dm6]	G	A	0	0	INTRON MFS3	TF binding site mE1_TFBS_cad
2L	1145316	2L_1145316_SNP [dm3] 2L_1145316_SNP [dm6]	T	G	0	0	INTRON MFS3	TF binding site mE1_TFBS_cad
2L	1147512	2L_1147512_SNP [dm3] 2L_1147512_SNP [dm6]	C	T	0	0	UPSTREAM CG4749 DOWNSTREAM MFS3 INTERGENIC
2L	1147533	2L_1147533_SNP [dm3] 2L_1147533_SNP [dm6]	C	T	0	0	UPSTREAM CG4749 DOWNSTREAM MFS3 INTERGENIC
2L	1149384	2L_1149384_SNP [dm3] 2L_1149384_SNP [dm6]	A	G	0	0	UTR_3_PRIME CG4749 DOWNSTREAM Tfb4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1151448	2L_1151448_DEL [dm3] 2L_1151448_DEL [dm6]	CCAACC	C	0	0	UTR_3_PRIME Vps29 UPSTREAM Tfb4 DOWNSTREAM capt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1153447	2L_1153447_SNP [dm3] 2L_1153447_SNP [dm6]	G	A	0	0	NON_SYNONYMOUS_CODING capt	TF binding site mE1_TFBS_chinmo
2L	1155396	2L_1155396_SNP [dm3] 2L_1155396_SNP [dm6]	G	A	0	0	INTRON capt
2L	1171061	2L_1171061_SNP [dm3] 2L_1171061_SNP [dm6]	T	C	0	0	SYNONYMOUS_CODING CG5118 UPSTREAM Plap DOWNSTREAM CG31922	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	12923181	2L_12923181_SNP [dm3] 2L_12923181_SNP [dm6]	G	C	0	0	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
2L	12923184	2L_12923184_SNP [dm3] 2L_12923184_SNP [dm6]	G	T	0	0	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
2L	12923201	2L_12923201_SNP [dm3] 2L_12923201_SNP [dm6]	T	C	0	0	INTRON ACXA
2L	16496322	2L_16496322_SNP [dm3] 2L_16496322_SNP [dm6]	C	G	0	0	UPSTREAM Tpr2 INTRON Tpr2	TF binding site mE1_TFBS_bab1
2L	16496323	2L_16496323_INS [dm3] 2L_16496323_INS [dm6]	A	AGGAAGAGTTTGAGCATGCT...	0	0	UPSTREAM Tpr2 INTRON Tpr2	TF binding site mE1_TFBS_bab1
2L	9199454	2L_9199454_SNP [dm3] 2L_9199454_SNP [dm6]	A	G	0	0	INTRON tai
2R	7298565	2R_7298565_INS [dm3] 2R_11411060_INS [dm6]	A	ATA	0	0	UPSTREAM CG34054 DOWNSTREAM Drip INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	12066593	3L_12066593_SNP [dm3] 3L_12073493_SNP [dm6]	C	T	0	0	INTRON Sema-5c
3L	855912	3L_855912_SNP [dm3] 3L_855912_SNP [dm6]	A	C	0	0	INTRON dpr20
3L	855926	3L_855926_DEL [dm3] 3L_855926_DEL [dm6]	AAGAC	A	0	0	INTRON dpr20
X	12529467	X_12529467_SNP [dm3] X_12635434_SNP [dm6]	G	T	0	0	UPSTREAM mir-970 INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6975779	X_6975779_SNP [dm3] X_7081746_SNP [dm6]	T	C	0	0	INTRON Sxl	TF binding site mE1_TFBS_zfh1
X	6975816	X_6975816_SNP [dm3] X_7081783_SNP [dm6]	T	A	0	0	INTRON Sxl
X	6975987	X_6975987_SNP [dm3] X_7081954_SNP [dm6]	T	G	0	0	DOWNSTREAM Sxl INTRON Sxl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9787806	X_9787806_SNP [dm3] X_9893773_SNP [dm6]	T	A	1.116e^-67	7.471e^-63	INTRON CG15249
3L	7428020	3L_7428020_SNP [dm3] 3L_7434920_SNP [dm6]	G	C	1.124e^-67	7.471e^-63	UTR_5_PRIME Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	1112388	3R_1112388_DEL [dm3] 3R_5286666_DEL [dm6]	AT	A	1.155e^-66	7.410e^-62	INTRON mtd
3L	12106191	3L_12106191_INS [dm3] 3L_12113091_INS [dm6]	A	AA	7.548e^-66	4.681e^-61	INTERGENIC
2R	14628234	2R_14628234_INS [dm3] 2R_18740729_INS [dm6]	T	TT	1.832e^-63	1.100e^-58	INTRON Hs3st-A EXON CR30121
2R	13048508	2R_13048508_SNP [dm3] 2R_17161003_SNP [dm6]	G	T	3.194e^-44	1.857e^-39	UPSTREAM CG30457 INTERGENIC
2L	12872319	2L_12872319_SNP [dm3] 2L_12872319_SNP [dm6]	C	T	7.848e^-28	4.424e^-23	INTERGENIC
2L	4021953	2L_4021953_SNP [dm3] 2L_4021953_SNP [dm6]	A	T	5.295e^-27	2.897e^-22	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_jumu
2L	10144109	2L_10144109_SNP [dm3] 2L_10144109_SNP [dm6]	A	T	3.311e^-26	1.760e^-21	UPSTREAM CG4839 INTRON CG44153
3L	7141174	3L_7141174_SNP [dm3] 3L_7148074_SNP [dm6]	G	A	1.209e^-22	6.249e^-18	INTRON corn	TF binding site mE1_TFBS_cad
2L	2256670	2L_2256670_SNP [dm3] 2L_2256670_SNP [dm6]	C	T	2.669e^-22	1.342e^-17	DOWNSTREAM CR44787 INTERGENIC
2L	11812107	2L_11812107_SNP [dm3] 2L_11812107_SNP [dm6]	G	A	5.733e^-21	2.807e^-16	SYNONYMOUS_CODING CycY	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15992170	3L_15992170_SNP [dm3] 3L_15999070_SNP [dm6]	A	C	2.057e^-20	9.569e^-16	INTRON CG5830
3L	15992172	3L_15992172_SNP [dm3] 3L_15999072_SNP [dm6]	A	C	2.057e^-20	9.569e^-16	INTRON CG5830
3L	20603952	3L_20603952_SNP [dm3] 3L_20610852_SNP [dm6]	G	T	6.838e^-18	3.103e^-13	INTRON knrl
X	2620098	X_2620098_SNP [dm3] X_2726065_SNP [dm6]	T	A	8.218e^-18	3.640e^-13	NON_SYNONYMOUS_CODING fs_1_Ya UPSTREAM CG2709	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12419949	3L_12419949_SNP [dm3] 3L_12426849_SNP [dm6]	G	C	9.275e^-18	3.751e^-13	INTRON toe	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	12420994	3L_12420994_SNP [dm3] 3L_12427894_SNP [dm6]	G	C	9.275e^-18	3.751e^-13	INTRON toe	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	12421028	3L_12421028_DEL [dm3] 3L_12427928_DEL [dm6]	AA	T	9.275e^-18	3.751e^-13	INTRON toe	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	12422198	3L_12422198_SNP [dm3] 3L_12429098_SNP [dm6]	A	C	9.275e^-18	3.751e^-13	INTRON toe
2R	18055581	2R_18055581_SNP [dm3] 2R_22168076_SNP [dm6]	G	T	1.667e^-17	6.120e^-13	INTRON a	TF binding site mE1_TFBS_chinmo
3L	12417379	3L_12417379_SNP [dm3] 3L_12424279_SNP [dm6]	T	A	1.676e^-17	6.120e^-13	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417409	3L_12417409_SNP [dm3] 3L_12424309_SNP [dm6]	T	A	1.676e^-17	6.120e^-13	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12420844	3L_12420844_SNP [dm3] 3L_12427744_SNP [dm6]	C	G	1.676e^-17	6.120e^-13	NON_SYNONYMOUS_CODING toe	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	12422478	3L_12422478_SNP [dm3] 3L_12429378_SNP [dm6]	C	T	1.842e^-17	6.120e^-13	INTRON toe
3L	12422479	3L_12422479_SNP [dm3] 3L_12429379_SNP [dm6]	C	A	1.842e^-17	6.120e^-13	INTRON toe
3L	12422483	3L_12422483_SNP [dm3] 3L_12429383_SNP [dm6]	C	A	1.842e^-17	6.120e^-13	INTRON toe
3L	12422485	3L_12422485_DEL [dm3] 3L_12429385_DEL [dm6]	TT	T	1.842e^-17	6.120e^-13	INTRON toe
3L	12422491	3L_12422491_DEL [dm3] 3L_12429391_DEL [dm6]	GAGTGT	A	1.842e^-17	6.120e^-13	INTRON toe
3L	12422501	3L_12422501_INS [dm3] 3L_12429401_INS [dm6]	A	AT	1.842e^-17	6.120e^-13	INTRON toe
3L	20637862	3L_20637862_SNP [dm3] 3L_20644762_SNP [dm6]	C	A	2.358e^-17	7.695e^-13	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9868581	3R_9868581_SNP [dm3] 3R_14042859_SNP [dm6]	T	G	2.999e^-17	9.500e^-13	INTERGENIC
3R	8923237	3R_8923237_SNP [dm3] 3R_13097515_SNP [dm6]	A	C	3.013e^-17	9.500e^-13	INTRON timeout
3L	12422505	3L_12422505_SNP [dm3] 3L_12429405_SNP [dm6]	G	T	3.306e^-17	1.013e^-12	INTRON toe
3L	12420847	3L_12420847_SNP [dm3] 3L_12427747_SNP [dm6]	C	G	3.322e^-17	1.013e^-12	NON_SYNONYMOUS_CODING toe	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	14698655	2R_14698655_SNP [dm3] 2R_18811150_SNP [dm6]	G	A	4.592e^-17	1.378e^-12	INTRON CG15096
3R	8923074	3R_8923074_SNP [dm3] 3R_13097352_SNP [dm6]	G	C	5.447e^-17	1.609e^-12	INTRON timeout
3L	12422408	3L_12422408_DEL [dm3] 3L_12429308_DEL [dm6]	TT	T	5.949e^-17	1.729e^-12	INTRON toe
3L	18642501	3L_18642501_SNP [dm3] 3L_18649401_SNP [dm6]	A	C	6.102e^-17	1.747e^-12	INTRON MYPT-75D
3L	8798510	3L_8798510_SNP [dm3] 3L_8805410_SNP [dm6]	G	A	7.019e^-17	1.979e^-12	NON_SYNONYMOUS_CODING CG34427 DOWNSTREAM CG13312	TF binding site mE1_TFBS_chinmo
3L	3894156	3L_3894156_SNP [dm3] 3L_3894156_SNP [dm6]	T	C	7.848e^-17	2.179e^-12	UPSTREAM snRNA:U11 DOWNSTREAM Gr63a INTRON Fie
2R	14701040	2R_14701040_SNP [dm3] 2R_18813535_SNP [dm6]	A	G	8.811e^-17	2.411e^-12	INTRON CG15096
2R	14698633	2R_14698633_SNP [dm3] 2R_18811128_SNP [dm6]	T	C	1.029e^-16	2.774e^-12	INTRON CG15096
3L	12420645	3L_12420645_DEL [dm3] 3L_12427545_DEL [dm6]	TT	T	1.668e^-16	4.433e^-12	INTRON toe	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	8796429	3L_8796429_SNP [dm3] 3L_8803329_SNP [dm6]	T	C	1.771e^-16	4.579e^-12	DOWNSTREAM CG32023 INTRON CG34426
3L	1063223	3L_1063223_SNP [dm3] 3L_1063223_SNP [dm6]	A	G	1.772e^-16	4.579e^-12	INTRON bab1
3L	1064235	3L_1064235_SNP [dm3] 3L_1064235_SNP [dm6]	C	G	1.801e^-16	4.591e^-12	INTRON bab1
2R	14563334	2R_14563334_SNP [dm3] 2R_18675829_SNP [dm6]	A	C	2.689e^-16	6.413e^-12	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	7892242	2R_7892242_SNP [dm3] 2R_12004737_SNP [dm6]	G	C	2.689e^-16	6.413e^-12	INTRON otk
2R	7893002	2R_7893002_SNP [dm3] 2R_12005497_SNP [dm6]	T	A	2.689e^-16	6.413e^-12	NON_SYNONYMOUS_CODING otk	TF binding site mE1_TFBS_chinmo
3L	12101249	3L_12101249_SNP [dm3] 3L_12108149_SNP [dm6]	A	G	2.689e^-16	6.413e^-12	INTERGENIC
3L	7425643	3L_7425643_SNP [dm3] 3L_7432543_SNP [dm6]	T	A	2.689e^-16	6.413e^-12	INTRON CG42458
3L	7057760	3L_7057760_INS [dm3] 3L_7064660_INS [dm6]	G	GTTT	3.808e^-16	8.967e^-12	INTRON CG8641
3L	14054813	3L_14054813_SNP [dm3] 3L_14061713_SNP [dm6]	G	A	4.400e^-16	9.985e^-12	INTRON CG32138
3L	12408841	3L_12408841_SNP [dm3] 3L_12415741_SNP [dm6]	A	G	4.508e^-16	9.985e^-12	SYNONYMOUS_CODING ArfGAP1 UPSTREAM CG32103	TF binding site mE1_TFBS_chinmo
3L	12413971	3L_12413971_SNP [dm3] 3L_12420871_SNP [dm6]	C	T	4.508e^-16	9.985e^-12	INTERGENIC
3L	12417385	3L_12417385_SNP [dm3] 3L_12424285_SNP [dm6]	G	A	4.508e^-16	9.985e^-12	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417521	3L_12417521_SNP [dm3] 3L_12424421_SNP [dm6]	T	C	4.508e^-16	9.985e^-12	INTRON toe	TF binding site mE1_TFBS_cad
2R	14742947	2R_14742947_SNP [dm3] 2R_18855442_SNP [dm6]	A	T	4.595e^-16	1.006e^-11	UPSTREAM Jheh1 DOWNSTREAM Jheh2 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
3L	12099886	3L_12099886_SNP [dm3] 3L_12106786_SNP [dm6]	T	A	4.726e^-16	1.022e^-11	INTERGENIC
2R	8689524	2R_8689524_SNP [dm3] 2R_12802019_SNP [dm6]	A	G	4.989e^-16	1.067e^-11	DOWNSTREAM sca INTERGENIC
3L	1139664	3L_1139664_INS [dm3] 3L_1139664_INS [dm6]	T	TT	6.550e^-16	1.345e^-11	DOWNSTREAM bab2 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12106921	3L_12106921_DEL [dm3] 3L_12113821_DEL [dm6]	TAAGCAAAAATAAAGTTTTG...	T	6.918e^-16	1.345e^-11	INTERGENIC
3L	15222709	3L_15222709_SNP [dm3] 3L_15229609_SNP [dm6]	T	G	7.122e^-16	1.345e^-11	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	1060052	3R_1060052_SNP [dm3] 3R_5234330_SNP [dm6]	G	A	7.156e^-16	1.345e^-11	NON_SYNONYMOUS_CODING Mms19	TF binding site mE1_TFBS_sens
3R	1088729	3R_1088729_SNP [dm3] 3R_5263007_SNP [dm6]	T	A	7.156e^-16	1.345e^-11	UPSTREAM Tim17a2 INTRON Hph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	1129679	3R_1129679_SNP [dm3] 3R_5303957_SNP [dm6]	A	G	7.156e^-16	1.345e^-11	INTRON mtd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1146541	3R_1146541_SNP [dm3] 3R_5320819_SNP [dm6]	G	T	7.156e^-16	1.345e^-11	INTRON mtd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	1149523	3R_1149523_SNP [dm3] 3R_5323801_SNP [dm6]	G	C	7.156e^-16	1.345e^-11	UTR_5_PRIME mtd INTRON mtd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	1193278	3R_1193278_SNP [dm3] 3R_5367556_SNP [dm6]	A	G	7.156e^-16	1.345e^-11	UPSTREAM CR44103 INTRON Cerk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	1198149	3R_1198149_SNP [dm3] 3R_5372427_SNP [dm6]	C	A	7.156e^-16	1.345e^-11	DOWNSTREAM hd & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	1203766	3R_1203766_SNP [dm3] 3R_5378044_SNP [dm6]	T	A	7.156e^-16	1.345e^-11	DOWNSTREAM kkv & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	1205981	3R_1205981_SNP [dm3] 3R_5380259_SNP [dm6]	G	A	7.156e^-16	1.345e^-11	INTRON kkv	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7894078	2R_7894078_SNP [dm3] 2R_12006573_SNP [dm6]	C	G	7.822e^-16	1.426e^-11	INTRON otk
3L	8796526	3L_8796526_SNP [dm3] 3L_8803426_SNP [dm6]	C	T	7.838e^-16	1.426e^-11	SYNONYMOUS_CODING CG34426 DOWNSTREAM CG32023
3L	11053484	3L_11053484_SNP [dm3] 3L_11060384_SNP [dm6]	T	A	7.845e^-16	1.426e^-11	DOWNSTREAM CG7888 INTRON CG6321
3R	9899127	3R_9899127_SNP [dm3] 3R_14073405_SNP [dm6]	A	G	7.894e^-16	1.426e^-11	INTRON foxo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16859820	X_16859820_SNP [dm3] X_16965787_SNP [dm6]	C	T	7.969e^-16	1.426e^-11	INTRON CG9086	TF binding site BDTNP1_TFBS_twi
3L	13737793	3L_13737793_SNP [dm3] 3L_13744693_SNP [dm6]	G	A	8.686e^-16	1.539e^-11	INTRON bru-3
2L	19419528	2L_19419528_SNP [dm3] 2L_19419528_SNP [dm6]	C	G	9.477e^-16	1.661e^-11	NON_SYNONYMOUS_CODING lectin-37Db DOWNSTREAM lectin-37Da INTRON Pax
3L	8805403	3L_8805403_SNP [dm3] 3L_8812303_SNP [dm6]	G	C	9.555e^-16	1.661e^-11	INTERGENIC
3L	8804060	3L_8804060_SNP [dm3] 3L_8810960_SNP [dm6]	C	A	9.901e^-16	1.706e^-11	INTRON CG13309	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	1113943	3R_1113943_SNP [dm3] 3R_5288221_SNP [dm6]	C	A	1.219e^-15	2.045e^-11	UPSTREAM mtd INTRON mtd
3R	1164145	3R_1164145_SNP [dm3] 3R_5338423_SNP [dm6]	T	A	1.219e^-15	2.045e^-11	INTRON mtd
2R	20318204	2R_20318204_SNP [dm3] 2R_24430681_SNP [dm6]	A	T	1.220e^-15	2.045e^-11	UTR_5_PRIME CG15873 DOWNSTREAM Pgam5-2	TF binding site mE1_TFBS_cad
3R	8481700	3R_8481700_SNP [dm3] 3R_12655978_SNP [dm6]	C	G	1.250e^-15	2.066e^-11	INTRON CG6225
3R	1196133	3R_1196133_SNP [dm3] 3R_5370411_SNP [dm6]	T	C	1.255e^-15	2.066e^-11	UTR_5_PRIME CG34277 UTR_3_PRIME CG31542	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1112295	3R_1112295_SNP [dm3] 3R_5286573_SNP [dm6]	G	T	1.277e^-15	2.084e^-11	INTRON mtd
3R	27387	3R_27387_INS [dm3] 3R_4201665_INS [dm6]	T	TATCTCATTTCATCATCTCA...	1.329e^-15	2.130e^-11	INTRON CG12582
3R	8869285	3R_8869285_SNP [dm3] 3R_13043563_SNP [dm6]	T	A	1.351e^-15	2.130e^-11	SYNONYMOUS_CODING CG11670 UPSTREAM snk & 1 other
3R	8869300	3R_8869300_SNP [dm3] 3R_13043578_SNP [dm6]	C	T	1.351e^-15	2.130e^-11	SYNONYMOUS_CODING CG11670 UPSTREAM snk & 1 other
3R	8869327	3R_8869327_SNP [dm3] 3R_13043605_SNP [dm6]	C	A	1.351e^-15	2.130e^-11	SYNONYMOUS_CODING CG11670 UPSTREAM snk & 1 other
X	3226453	X_3226453_SNP [dm3] X_3332420_SNP [dm6]	T	C	2.004e^-15	3.133e^-11	INTRON CR44886 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	1159578	3R_1159578_SNP [dm3] 3R_5333856_SNP [dm6]	G	T	2.049e^-15	3.177e^-11	INTRON mtd
3R	1196283	3R_1196283_SNP [dm3] 3R_5370561_SNP [dm6]	G	T	2.078e^-15	3.195e^-11	NON_SYNONYMOUS_CODING CG34277 UTR_3_PRIME CG31542 DOWNSTREAM CG31542	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1424688	3L_1424688_DEL [dm3] 3L_1424688_DEL [dm6]	ATTTC	A	3.782e^-15	5.361e^-11	INTRON Ptp61F
2R	13048570	2R_13048570_SNP [dm3] 2R_17161065_SNP [dm6]	T	C	3.845e^-15	5.361e^-11	UPSTREAM CG30457 INTERGENIC
2R	903479	2R_903479_SNP [dm3] 2R_5015974_SNP [dm6]	T	G	3.877e^-15	5.361e^-11	INTRON Ir41a	transposable element FlyBase
3R	1220667	3R_1220667_DEL [dm3] 3R_5394945_DEL [dm6]	TT	T	3.908e^-15	5.361e^-11	INTRON CG1172	TF binding site BDTNP1_TFBS_dl
3R	19531	3R_19531_INS [dm3] 3R_4193809_INS [dm6]	A	ACAGTATAATTCGCTTAGCT...	6.040e^-15	5.361e^-11	INTRON CR33294	transposable element FlyBase
2R	11600230	2R_11600230_SNP [dm3] 2R_15712725_SNP [dm6]	G	T	6.864e^-15	5.361e^-11	UPSTREAM CG30083 INTERGENIC
2R	13043157	2R_13043157_SNP [dm3] 2R_17155652_SNP [dm6]	T	G	6.864e^-15	5.361e^-11	UTR_3_PRIME CG17290 DOWNSTREAM CG17290 & 1 other
2R	13043204	2R_13043204_SNP [dm3] 2R_17155699_SNP [dm6]	G	A	6.864e^-15	5.361e^-11	UTR_3_PRIME CG17290 DOWNSTREAM CG17290 & 1 other
2R	13043571	2R_13043571_SNP [dm3] 2R_17156066_SNP [dm6]	C	T	6.864e^-15	5.361e^-11	UTR_3_PRIME CG17290 DOWNSTREAM CG17290 & 1 other
2R	13812927	2R_13812927_SNP [dm3] 2R_17925422_SNP [dm6]	C	T	6.864e^-15	5.361e^-11	UTR_3_PRIME Elk
2R	13812942	2R_13812942_SNP [dm3] 2R_17925437_SNP [dm6]	A	T	6.864e^-15	5.361e^-11	UTR_3_PRIME Elk
2R	14787143	2R_14787143_SNP [dm3] 2R_18899638_SNP [dm6]	A	C	6.864e^-15	5.361e^-11	DOWNSTREAM snoRNA:Me28S-U1130 INTRON sano
2R	20289861	2R_20289861_SNP [dm3] 2R_24402338_SNP [dm6]	G	A	6.864e^-15	5.361e^-11	UTR_5_PRIME slik UPSTREAM Rpn8 INTRON Rpn8 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10538547	3L_10538547_SNP [dm3] 3L_10545447_SNP [dm6]	T	G	6.864e^-15	5.361e^-11	INTRON A2bp1
3L	10538549	3L_10538549_SNP [dm3] 3L_10545449_SNP [dm6]	G	A	6.864e^-15	5.361e^-11	INTRON A2bp1
3L	11374629	3L_11374629_SNP [dm3] 3L_11381529_SNP [dm6]	G	A	6.864e^-15	5.361e^-11	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	14120336	3L_14120336_SNP [dm3] 3L_14127236_SNP [dm6]	G	A	6.864e^-15	5.361e^-11	INTRON Sox21b
3L	22186521	3L_22186521_SNP [dm3] 3L_22193421_SNP [dm6]	T	A	6.864e^-15	5.361e^-11	INTRON olf413	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22216150	3L_22216150_SNP [dm3] 3L_22223050_SNP [dm6]	T	C	6.864e^-15	5.361e^-11	INTRON olf413
3L	22231369	3L_22231369_SNP [dm3] 3L_22238269_SNP [dm6]	A	T	6.864e^-15	5.361e^-11	INTRON olf413
3L	22245499	3L_22245499_SNP [dm3] 3L_22252399_SNP [dm6]	C	T	6.864e^-15	5.361e^-11	INTERGENIC
3L	22251524	3L_22251524_SNP [dm3] 3L_22258424_SNP [dm6]	G	A	6.864e^-15	5.361e^-11	SYNONYMOUS_CODING Rich
3L	22263542	3L_22263542_SNP [dm3] 3L_22270442_SNP [dm6]	A	T	6.864e^-15	5.361e^-11	INTRON Csp
3L	22288575	3L_22288575_SNP [dm3] 3L_22295475_SNP [dm6]	T	A	6.864e^-15	5.361e^-11	NON_SYNONYMOUS_CODING Ten-m UTR_3_PRIME Ten-m
3L	22302594	3L_22302594_SNP [dm3] 3L_22309494_SNP [dm6]	G	T	6.864e^-15	5.361e^-11	INTRON Ten-m
3L	22322104	3L_22322104_SNP [dm3] 3L_22329004_SNP [dm6]	C	T	6.864e^-15	5.361e^-11	UPSTREAM CG32450 INTRON Ten-m	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	22322410	3L_22322410_SNP [dm3] 3L_22329310_SNP [dm6]	G	A	6.864e^-15	5.361e^-11	UPSTREAM CG32450 INTRON Ten-m	TF binding site mE1_TFBS_cad
3L	22326315	3L_22326315_SNP [dm3] 3L_22333215_SNP [dm6]	G	T	6.864e^-15	5.361e^-11	INTRON Ten-m
3L	22328798	3L_22328798_DEL [dm3] 3L_22335698_DEL [dm6]	TCCT	T	6.864e^-15	5.361e^-11	INTRON Ten-m
3L	22329602	3L_22329602_INS [dm3] 3L_22336502_INS [dm6]	A	AAAAT	6.864e^-15	5.361e^-11	INTRON Ten-m	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22329604	3L_22329604_DEL [dm3] 3L_22336504_DEL [dm6]	ACACATCCACAG...	A	6.864e^-15	5.361e^-11	INTRON Ten-m	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22329801	3L_22329801_SNP [dm3] 3L_22336701_SNP [dm6]	T	G	6.864e^-15	5.361e^-11	INTRON Ten-m
3L	22332078	3L_22332078_SNP [dm3] 3L_22338978_SNP [dm6]	C	T	6.864e^-15	5.361e^-11	INTRON Ten-m	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22333316	3L_22333316_SNP [dm3] 3L_22340216_SNP [dm6]	T	C	6.864e^-15	5.361e^-11	INTRON Ten-m	TF binding site mE1_TFBS_HSA
3L	22351661	3L_22351661_SNP [dm3] 3L_22358561_SNP [dm6]	A	G	6.864e^-15	5.361e^-11	INTRON Ten-m
3L	22362235	3L_22362235_SNP [dm3] 3L_22369135_SNP [dm6]	G	A	6.864e^-15	5.361e^-11	INTRON Ten-m
3L	22364329	3L_22364329_SNP [dm3] 3L_22371229_SNP [dm6]	A	T	6.864e^-15	5.361e^-11	INTRON Ten-m	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	22388089	3L_22388089_SNP [dm3] 3L_22394989_SNP [dm6]	C	A	6.864e^-15	5.361e^-11	INTRON Ten-m	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	22388091	3L_22388091_DEL [dm3] 3L_22394991_DEL [dm6]	GC	G	6.864e^-15	5.361e^-11	INTRON Ten-m	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	22403438	3L_22403438_SNP [dm3] 3L_22410338_SNP [dm6]	C	A	6.864e^-15	5.361e^-11	INTERGENIC	TF binding site mE1_TFBS_inv
3L	22444293	3L_22444293_SNP [dm3] 3L_22451193_SNP [dm6]	G	A	6.864e^-15	5.361e^-11	INTERGENIC
3L	22452325	3L_22452325_SNP [dm3] 3L_22459225_SNP [dm6]	C	T	6.864e^-15	5.361e^-11	UTR_3_PRIME laza	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	22561448	3L_22561448_SNP [dm3] 3L_22568348_SNP [dm6]	G	T	6.864e^-15	5.361e^-11	INTERGENIC
3L	22570670	3L_22570670_SNP [dm3] 3L_22577570_SNP [dm6]	C	A	6.864e^-15	5.361e^-11	INTERGENIC
3L	2262659	3L_2262659_SNP [dm3] 3L_2262659_SNP [dm6]	A	G	6.864e^-15	5.361e^-11	UTR_5_PRIME oxt UPSTREAM CG13807 DOWNSTREAM ecd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3L	2262663	3L_2262663_SNP [dm3] 3L_2262663_SNP [dm6]	C	A	6.864e^-15	5.361e^-11	UTR_5_PRIME oxt UPSTREAM CG13807 DOWNSTREAM ecd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3L	2910462	3L_2910462_SNP [dm3] 3L_2910462_SNP [dm6]	A	T	6.864e^-15	5.361e^-11	INTRON Shab
3L	3730101	3L_3730101_SNP [dm3] 3L_3730101_SNP [dm6]	T	C	6.864e^-15	5.361e^-11	INTRON CG32264
3L	8437285	3L_8437285_SNP [dm3] 3L_8444185_SNP [dm6]	C	T	6.864e^-15	5.361e^-11	SYNONYMOUS_CODING CG6983	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	8779380	3L_8779380_SNP [dm3] 3L_8786280_SNP [dm6]	C	A	6.864e^-15	5.361e^-11	INTRON Fhos
3R	10123603	3R_10123603_SNP [dm3] 3R_14297881_SNP [dm6]	G	A	6.864e^-15	5.361e^-11	UPSTREAM CG12207 INTRON CG12207	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10851771	3R_10851771_SNP [dm3] 3R_15026049_SNP [dm6]	C	G	6.864e^-15	5.361e^-11	INTERGENIC
3R	10940442	3R_10940442_SNP [dm3] 3R_15114720_SNP [dm6]	A	C	6.864e^-15	5.361e^-11	INTRON CG42788
3R	1266659	3R_1266659_SNP [dm3] 3R_5440937_SNP [dm6]	G	T	6.864e^-15	5.361e^-11	INTRON CG14669
3R	13584475	3R_13584475_SNP [dm3] 3R_17758753_SNP [dm6]	G	T	6.864e^-15	5.361e^-11	UTR_5_PRIME TyrR INTRON TyrR
3R	1486093	3R_1486093_SNP [dm3] 3R_5660371_SNP [dm6]	A	T	6.864e^-15	5.361e^-11	UPSTREAM CG1109 & 1 other EXON CR44093	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sbb mE1_TFBS_Ubx
3R	18568303	3R_18568303_SNP [dm3] 3R_22742581_SNP [dm6]	T	G	6.864e^-15	5.361e^-11	NON_SYNONYMOUS_CODING CG6985 DOWNSTREAM vret
3R	18573867	3R_18573867_SNP [dm3] 3R_22748145_SNP [dm6]	T	C	6.864e^-15	5.361e^-11	SYNONYMOUS_CODING CG31139 UPSTREAM CG17141 DOWNSTREAM rumi	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo
3R	18574866	3R_18574866_SNP [dm3] 3R_22749144_SNP [dm6]	C	A	6.864e^-15	5.361e^-11	UTR_3_PRIME rumi UPSTREAM CG31139
3R	19235982	3R_19235982_SNP [dm3] 3R_23410260_SNP [dm6]	A	G	6.864e^-15	5.361e^-11	SYNONYMOUS_CODING CG4374	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19698819	3R_19698819_SNP [dm3] 3R_23873097_SNP [dm6]	T	C	6.864e^-15	5.361e^-11	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19699662	3R_19699662_SNP [dm3] 3R_23873940_SNP [dm6]	T	A	6.864e^-15	5.361e^-11	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25082161	3R_25082161_SNP [dm3] 3R_29256439_SNP [dm6]	G	A	6.864e^-15	5.361e^-11	UPSTREAM CG45544 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sens
3R	9783905	3R_9783905_SNP [dm3] 3R_13958183_SNP [dm6]	T	C	6.864e^-15	5.361e^-11	UPSTREAM Ipp INTERGENIC	TF binding site mE1_TFBS_cad
3R	9841148	3R_9841148_SNP [dm3] 3R_14015426_SNP [dm6]	C	T	6.864e^-15	5.361e^-11	INTRON rdx
3R	9845131	3R_9845131_DEL [dm3] 3R_14019409_DEL [dm6]	AT	A	6.864e^-15	5.361e^-11	INTRON rdx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	11737965	X_11737965_SNP [dm3] X_11843932_SNP [dm6]	A	G	6.864e^-15	5.361e^-11	SYNONYMOUS_CODING CG15740	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	17277115	X_17277115_SNP [dm3] X_17383082_SNP [dm6]	T	G	6.864e^-15	5.361e^-11	INTERGENIC
X	17400660	X_17400660_INS [dm3] X_17506627_INS [dm6]	T	TTTTTTTTCT	6.864e^-15	5.361e^-11	UTR_5_PRIME CG43658 INTRON CG43658	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	19525279	X_19525279_SNP [dm3] X_19631246_SNP [dm6]	T	G	6.864e^-15	5.361e^-11	INTRON e_y_3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	19525316	X_19525316_SNP [dm3] X_19631283_SNP [dm6]	G	A	6.864e^-15	5.361e^-11	INTRON e_y_3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19525322	X_19525322_SNP [dm3] X_19631289_SNP [dm6]	G	T	6.864e^-15	5.361e^-11	INTRON e_y_3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19525366	X_19525366_SNP [dm3] X_19631333_SNP [dm6]	C	T	6.864e^-15	5.361e^-11	INTRON e_y_3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	2598168	X_2598168_SNP [dm3] X_2704135_SNP [dm6]	A	T	6.864e^-15	5.361e^-11	UPSTREAM eIF2B-beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	6310633	X_6310633_SNP [dm3] X_6416600_SNP [dm6]	G	A	6.864e^-15	5.361e^-11	INTERGENIC
X	6310635	X_6310635_SNP [dm3] X_6416602_SNP [dm6]	T	C	6.864e^-15	5.361e^-11	INTERGENIC
X	9854724	X_9854724_SNP [dm3] X_9960691_SNP [dm6]	A	G	6.864e^-15	5.361e^-11	INTERGENIC
3L	13623932	3L_13623932_SNP [dm3] 3L_13630832_SNP [dm6]	A	G	6.966e^-15	5.361e^-11	INTRON bru-3
2R	8685929	2R_8685929_SNP [dm3] 2R_12798424_SNP [dm6]	G	A	7.132e^-15	5.361e^-11	INTRON sca EXON CR45137
2R	13530206	2R_13530206_SNP [dm3] 2R_17642701_SNP [dm6]	C	G	8.876e^-15	5.361e^-11	INTERGENIC
3L	2262662	3L_2262662_SNP [dm3] 3L_2262662_SNP [dm6]	G	C	8.926e^-15	5.361e^-11	UTR_5_PRIME oxt UPSTREAM CG13807 DOWNSTREAM ecd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3R	9816982	3R_9816982_SNP [dm3] 3R_13991260_SNP [dm6]	G	T	8.926e^-15	5.361e^-11	INTRON rdx	TF binding site mE1_TFBS_cad
3R	9820592	3R_9820592_SNP [dm3] 3R_13994870_SNP [dm6]	A	T	8.926e^-15	5.361e^-11	INTRON rdx
3R	9821622	3R_9821622_SNP [dm3] 3R_13995900_SNP [dm6]	A	G	8.926e^-15	5.361e^-11	INTRON rdx
3L	15681181	3L_15681181_SNP [dm3] 3L_15688081_SNP [dm6]	T	G	9.503e^-15	5.361e^-11	UPSTREAM CG34452 DOWNSTREAM CG34451 INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22529590	3L_22529590_SNP [dm3] 3L_22536490_SNP [dm6]	T	A	9.503e^-15	5.361e^-11	INTERGENIC
2R	18433085	2R_18433085_SNP [dm3] 2R_22545580_SNP [dm6]	A	G	1.079e^-14	5.361e^-11	INTRON px	TF binding site BDTNP1_TFBS_dl
2R	19114010	2R_19114010_SNP [dm3] 2R_23226487_SNP [dm6]	G	T	1.079e^-14	5.361e^-11	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6053457	2R_6053457_SNP [dm3] 2R_10165952_SNP [dm6]	G	C	1.079e^-14	5.361e^-11	INTRON KCNQ
2R	6179009	2R_6179009_SNP [dm3] 2R_10291504_SNP [dm6]	A	G	1.079e^-14	5.361e^-11	INTRON CAP
3L	8577193	3L_8577193_SNP [dm3] 3L_8584093_SNP [dm6]	A	T	1.079e^-14	5.361e^-11	INTRON CG43078
3L	9642815	3L_9642815_SNP [dm3] 3L_9649715_SNP [dm6]	G	A	1.079e^-14	5.361e^-11	INTRON fry & 1 other
2R	14787032	2R_14787032_SNP [dm3] 2R_18899527_SNP [dm6]	C	T	1.110e^-14	5.361e^-11	INTRON sano EXON snoRNA:Me28S-U1130
2R	9488563	2R_9488563_SNP [dm3] 2R_13601058_SNP [dm6]	T	C	1.110e^-14	5.361e^-11	UTR_5_PRIME CG43058
3L	1439417	3L_1439417_SNP [dm3] 3L_1439417_SNP [dm6]	T	C	1.111e^-14	5.361e^-11	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da
3L	2912085	3L_2912085_SNP [dm3] 3L_2912085_SNP [dm6]	G	A	1.111e^-14	5.361e^-11	INTRON Shab
3R	14501391	3R_14501391_SNP [dm3] 3R_18675669_SNP [dm6]	C	G	1.111e^-14	5.361e^-11	NON_SYNONYMOUS_CODING CG7705 UTR_3_PRIME CG7705 DOWNSTREAM CG7702	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15828275	3R_15828275_SNP [dm3] 3R_20002553_SNP [dm6]	G	A	1.111e^-14	5.361e^-11	INTRON Hs6st	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17908446	3R_17908446_SNP [dm3] 3R_22082724_SNP [dm6]	T	G	1.111e^-14	5.361e^-11	INTRON CG13408
3R	19699524	3R_19699524_SNP [dm3] 3R_23873802_SNP [dm6]	C	T	1.111e^-14	5.361e^-11	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19699531	3R_19699531_SNP [dm3] 3R_23873809_SNP [dm6]	A	G	1.111e^-14	5.361e^-11	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17692045	X_17692045_SNP [dm3] X_17798012_SNP [dm6]	G	T	1.111e^-14	5.361e^-11	INTRON OdsH
2R	18349405	2R_18349405_INS [dm3] 2R_22461900_INS [dm6]	T	TTACAG	1.112e^-14	5.361e^-11	INTRON CG10384
2R	18349412	2R_18349412_DEL [dm3] 2R_22461907_DEL [dm6]	GTA	G	1.112e^-14	5.361e^-11	INTRON CG10384
2R	20869325	2R_20869325_SNP [dm3] 2R_24981802_SNP [dm6]	G	A	1.112e^-14	5.361e^-11	UPSTREAM emp INTRON emp	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	20901705	2R_20901705_SNP [dm3] 2R_25014182_SNP [dm6]	C	T	1.112e^-14	5.361e^-11	INTRON uzip	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20905775	2R_20905775_SNP [dm3] 2R_25018252_SNP [dm6]	A	C	1.112e^-14	5.361e^-11	INTRON uzip	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20905905	2R_20905905_SNP [dm3] 2R_25018382_SNP [dm6]	T	A	1.112e^-14	5.361e^-11	INTRON uzip	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20906781	2R_20906781_SNP [dm3] 2R_25019258_SNP [dm6]	C	T	1.112e^-14	5.361e^-11	INTRON uzip	TF binding site mE1_TFBS_HSA
2R	20907008	2R_20907008_SNP [dm3] 2R_25019485_SNP [dm6]	T	C	1.112e^-14	5.361e^-11	INTRON uzip
2R	20909305	2R_20909305_INS [dm3] 2R_25021782_INS [dm6]	A	ACACAAA	1.112e^-14	5.361e^-11	INTRON uzip
2R	20910746	2R_20910746_SNP [dm3] 2R_25023223_SNP [dm6]	A	G	1.112e^-14	5.361e^-11	INTRON uzip
2R	20911115	2R_20911115_SNP [dm3] 2R_25023592_SNP [dm6]	G	A	1.112e^-14	5.361e^-11	INTRON uzip
2R	20911481	2R_20911481_SNP [dm3] 2R_25023958_SNP [dm6]	T	A	1.112e^-14	5.361e^-11	INTRON uzip
2R	20911524	2R_20911524_SNP [dm3] 2R_25024001_SNP [dm6]	T	C	1.112e^-14	5.361e^-11	INTRON uzip
2R	20912050	2R_20912050_SNP [dm3] 2R_25024527_SNP [dm6]	G	C	1.112e^-14	5.361e^-11	INTRON uzip
2R	20913932	2R_20913932_SNP [dm3] 2R_25026409_SNP [dm6]	A	C	1.112e^-14	5.361e^-11	INTRON uzip	TF binding site BDTNP1_TFBS_da
2R	20914078	2R_20914078_SNP [dm3] 2R_25026555_SNP [dm6]	T	C	1.112e^-14	5.361e^-11	INTRON uzip	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	20914777	2R_20914777_DEL [dm3] 2R_25027254_DEL [dm6]	AACATG	A	1.112e^-14	5.361e^-11	INTRON uzip
2R	20914818	2R_20914818_SNP [dm3] 2R_25027295_SNP [dm6]	C	T	1.112e^-14	5.361e^-11	INTRON uzip
2R	20915002	2R_20915002_SNP [dm3] 2R_25027479_SNP [dm6]	C	T	1.112e^-14	5.361e^-11	INTRON uzip
2R	20916557	2R_20916557_SNP [dm3] 2R_25029034_SNP [dm6]	C	G	1.112e^-14	5.361e^-11	NON_SYNONYMOUS_CODING uzip
2R	20917834	2R_20917834_DEL [dm3] 2R_25030311_DEL [dm6]	ATA	A	1.112e^-14	5.361e^-11	UTR_3_PRIME uzip DOWNSTREAM uzip	TF binding site BDTNP1_TFBS_twi
2R	20917889	2R_20917889_SNP [dm3] 2R_25030366_SNP [dm6]	T	A	1.112e^-14	5.361e^-11	UTR_3_PRIME uzip DOWNSTREAM uzip	TF binding site BDTNP1_TFBS_twi
2R	20917974	2R_20917974_SNP [dm3] 2R_25030451_SNP [dm6]	A	G	1.112e^-14	5.361e^-11	UTR_3_PRIME uzip DOWNSTREAM uzip	TF binding site BDTNP1_TFBS_twi
2R	20917988	2R_20917988_SNP [dm3] 2R_25030465_SNP [dm6]	A	G	1.112e^-14	5.361e^-11	UTR_3_PRIME uzip DOWNSTREAM uzip	TF binding site BDTNP1_TFBS_twi
2R	20918382	2R_20918382_SNP [dm3] 2R_25030859_SNP [dm6]	T	C	1.112e^-14	5.361e^-11	UTR_3_PRIME uzip DOWNSTREAM uzip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	20918427	2R_20918427_SNP [dm3] 2R_25030904_SNP [dm6]	T	C	1.112e^-14	5.361e^-11	UTR_3_PRIME uzip DOWNSTREAM uzip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	20919353	2R_20919353_SNP [dm3] 2R_25031830_SNP [dm6]	A	G	1.112e^-14	5.361e^-11	UPSTREAM Nplp1 DOWNSTREAM uzip INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	20920746	2R_20920746_SNP [dm3] 2R_25033223_SNP [dm6]	T	C	1.112e^-14	5.361e^-11	INTRON Nplp1	TF binding site BDTNP1_TFBS_twi
2R	20920924	2R_20920924_SNP [dm3] 2R_25033401_SNP [dm6]	C	T	1.112e^-14	5.361e^-11	INTRON Nplp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
2R	20920928	2R_20920928_SNP [dm3] 2R_25033405_SNP [dm6]	T	C	1.112e^-14	5.361e^-11	INTRON Nplp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
2R	20921031	2R_20921031_SNP [dm3] 2R_25033508_SNP [dm6]	T	A	1.112e^-14	5.361e^-11	INTRON Nplp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
2R	20921125	2R_20921125_SNP [dm3] 2R_25033602_SNP [dm6]	G	C	1.112e^-14	5.361e^-11	INTRON Nplp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	20921943	2R_20921943_SNP [dm3] 2R_25034420_SNP [dm6]	T	A	1.112e^-14	5.361e^-11	INTRON Nplp1
2R	20922101	2R_20922101_SNP [dm3] 2R_25034578_SNP [dm6]	T	A	1.112e^-14	5.361e^-11	INTRON Nplp1
2R	20922208	2R_20922208_SNP [dm3] 2R_25034685_SNP [dm6]	C	A	1.112e^-14	5.361e^-11	INTRON Nplp1
2R	20922428	2R_20922428_SNP [dm3] 2R_25034905_SNP [dm6]	A	C	1.112e^-14	5.361e^-11	INTRON Nplp1
2R	20922529	2R_20922529_SNP [dm3] 2R_25035006_SNP [dm6]	G	A	1.112e^-14	5.361e^-11	INTRON Nplp1
2R	20922637	2R_20922637_SNP [dm3] 2R_25035114_SNP [dm6]	A	T	1.112e^-14	5.361e^-11	INTRON Nplp1
2R	20922699	2R_20922699_SNP [dm3] 2R_25035176_SNP [dm6]	A	T	1.112e^-14	5.361e^-11	INTRON Nplp1
2R	20922726	2R_20922726_SNP [dm3] 2R_25035203_SNP [dm6]	T	C	1.112e^-14	5.361e^-11	INTRON Nplp1
2R	20922861	2R_20922861_SNP [dm3] 2R_25035338_SNP [dm6]	C	T	1.112e^-14	5.361e^-11	INTRON Nplp1
2R	20923090	2R_20923090_SNP [dm3] 2R_25035567_SNP [dm6]	A	T	1.112e^-14	5.361e^-11	INTRON Nplp1
2R	20923095	2R_20923095_SNP [dm3] 2R_25035572_SNP [dm6]	G	T	1.112e^-14	5.361e^-11	INTRON Nplp1
2R	20923275	2R_20923275_SNP [dm3] 2R_25035752_SNP [dm6]	A	G	1.112e^-14	5.361e^-11	INTRON Nplp1
2R	20923374	2R_20923374_SNP [dm3] 2R_25035851_SNP [dm6]	T	C	1.112e^-14	5.361e^-11	INTRON Nplp1
2R	20923585	2R_20923585_SNP [dm3] 2R_25036062_SNP [dm6]	G	T	1.112e^-14	5.361e^-11	INTRON Nplp1
2R	20923601	2R_20923601_SNP [dm3] 2R_25036078_SNP [dm6]	G	T	1.112e^-14	5.361e^-11	INTRON Nplp1
2R	20923697	2R_20923697_SNP [dm3] 2R_25036174_SNP [dm6]	T	C	1.112e^-14	5.361e^-11	INTRON Nplp1
2R	20923767	2R_20923767_SNP [dm3] 2R_25036244_SNP [dm6]	C	G	1.112e^-14	5.361e^-11	INTRON Nplp1
2R	20923818	2R_20923818_SNP [dm3] 2R_25036295_SNP [dm6]	T	C	1.112e^-14	5.361e^-11	INTRON Nplp1
2R	20924587	2R_20924587_SNP [dm3] 2R_25037064_SNP [dm6]	T	C	1.112e^-14	5.361e^-11	SYNONYMOUS_CODING Nplp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	20925539	2R_20925539_SNP [dm3] 2R_25038016_SNP [dm6]	T	G	1.112e^-14	5.361e^-11	INTRON Nplp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	20925651	2R_20925651_SNP [dm3] 2R_25038128_SNP [dm6]	T	G	1.112e^-14	5.361e^-11	INTRON Nplp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_sens
2R	20926251	2R_20926251_SNP [dm3] 2R_25038728_SNP [dm6]	T	A	1.112e^-14	5.361e^-11	INTRON Nplp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	20926414	2R_20926414_SNP [dm3] 2R_25038891_SNP [dm6]	T	A	1.112e^-14	5.361e^-11	INTRON Nplp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_eve mE1_TFBS_HSA
2R	20928140	2R_20928140_SNP [dm3] 2R_25040617_SNP [dm6]	G	C	1.112e^-14	5.361e^-11	UTR_3_PRIME gsb-n DOWNSTREAM Nplp1	TF binding site mE1_TFBS_cad
2R	20929097	2R_20929097_SNP [dm3] 2R_25041574_SNP [dm6]	A	G	1.112e^-14	5.361e^-11	SYNONYMOUS_CODING gsb-n	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20929628	2R_20929628_SNP [dm3] 2R_25042105_SNP [dm6]	C	T	1.112e^-14	5.361e^-11	INTRON gsb-n	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20930307	2R_20930307_SNP [dm3] 2R_25042784_SNP [dm6]	A	G	1.112e^-14	5.361e^-11	INTRON gsb-n	TF binding site mE1_TFBS_cad
2R	20930456	2R_20930456_SNP [dm3] 2R_25042933_SNP [dm6]	C	T	1.112e^-14	5.361e^-11	INTRON gsb-n
2R	20932268	2R_20932268_SNP [dm3] 2R_25044745_SNP [dm6]	T	C	1.112e^-14	5.361e^-11	INTRON gsb-n	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20934760	2R_20934760_SNP [dm3] 2R_25047237_SNP [dm6]	A	G	1.112e^-14	5.361e^-11	INTRON gsb-n	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	20935198	2R_20935198_SNP [dm3] 2R_25047675_SNP [dm6]	G	A	1.112e^-14	5.361e^-11	INTRON gsb-n	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2R	20935367	2R_20935367_SNP [dm3] 2R_25047844_SNP [dm6]	A	T	1.112e^-14	5.361e^-11	INTRON gsb-n	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2R	20936283	2R_20936283_SNP [dm3] 2R_25048760_SNP [dm6]	T	C	1.112e^-14	5.361e^-11	INTRON gsb-n	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20936717	2R_20936717_SNP [dm3] 2R_25049194_SNP [dm6]	T	A	1.112e^-14	5.361e^-11	INTRON gsb-n
2R	20937974	2R_20937974_SNP [dm3] 2R_25050451_SNP [dm6]	G	A	1.112e^-14	5.361e^-11	INTRON gsb-n	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20938413	2R_20938413_SNP [dm3] 2R_25050890_SNP [dm6]	C	A	1.112e^-14	5.361e^-11	INTRON gsb-n	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	20938751	2R_20938751_SNP [dm3] 2R_25051228_SNP [dm6]	C	T	1.112e^-14	5.361e^-11	INTRON gsb-n	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	20938774	2R_20938774_SNP [dm3] 2R_25051251_SNP [dm6]	G	C	1.112e^-14	5.361e^-11	INTRON gsb-n	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	20940327	2R_20940327_SNP [dm3] 2R_25052804_SNP [dm6]	T	A	1.112e^-14	5.361e^-11	UPSTREAM gsb-n INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20940848	2R_20940848_SNP [dm3] 2R_25053325_SNP [dm6]	C	T	1.112e^-14	5.361e^-11	UPSTREAM gsb-n INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	20941108	2R_20941108_SNP [dm3] 2R_25053585_SNP [dm6]	C	T	1.112e^-14	5.361e^-11	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
2R	20941710	2R_20941710_SNP [dm3] 2R_25054187_SNP [dm6]	G	A	1.112e^-14	5.361e^-11	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20941919	2R_20941919_SNP [dm3] 2R_25054396_SNP [dm6]	G	A	1.112e^-14	5.361e^-11	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2R	20942154	2R_20942154_SNP [dm3] 2R_25054631_SNP [dm6]	G	A	1.112e^-14	5.361e^-11	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20942377	2R_20942377_DEL [dm3] 2R_25054854_DEL [dm6]	TG	T	1.112e^-14	5.361e^-11	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20942423	2R_20942423_DEL [dm3] 2R_25054900_DEL [dm6]	TTGTTTGCCT	A	1.112e^-14	5.361e^-11	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20942687	2R_20942687_SNP [dm3] 2R_25055164_SNP [dm6]	C	T	1.112e^-14	5.361e^-11	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	20944815	2R_20944815_INS [dm3] 2R_25057292_INS [dm6]	G	TGTCTACTTGTCTT...	1.112e^-14	5.361e^-11	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	20945861	2R_20945861_SNP [dm3] 2R_25058338_SNP [dm6]	A	G	1.112e^-14	5.361e^-11	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_prd
2R	20947043	2R_20947043_SNP [dm3] 2R_25059520_SNP [dm6]	T	G	1.112e^-14	5.361e^-11	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	20947663	2R_20947663_SNP [dm3] 2R_25060140_SNP [dm6]	C	T	1.112e^-14	5.361e^-11	INTERGENIC	regulatory region REDfly_CRMs
2R	20948217	2R_20948217_SNP [dm3] 2R_25060694_SNP [dm6]	C	T	1.112e^-14	5.361e^-11	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	20948233	2R_20948233_SNP [dm3] 2R_25060710_SNP [dm6]	C	T	1.112e^-14	5.361e^-11	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	20954056	2R_20954056_SNP [dm3] 2R_25066533_SNP [dm6]	G	A	1.112e^-14	5.361e^-11	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2R	20954273	2R_20954273_SNP [dm3] 2R_25066750_SNP [dm6]	G	T	1.112e^-14	5.361e^-11	INTERGENIC
2R	20956375	2R_20956375_SNP [dm3] 2R_25068852_SNP [dm6]	C	T	1.112e^-14	5.361e^-11	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
2R	20956920	2R_20956920_SNP [dm3] 2R_25069397_SNP [dm6]	C	T	1.112e^-14	5.361e^-11	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	20958898	2R_20958898_SNP [dm3] 2R_25071375_SNP [dm6]	C	A	1.112e^-14	5.361e^-11	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20959081	2R_20959081_SNP [dm3] 2R_25071558_SNP [dm6]	A	T	1.112e^-14	5.361e^-11	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20960548	2R_20960548_SNP [dm3] 2R_25073025_SNP [dm6]	G	A	1.112e^-14	5.361e^-11	SYNONYMOUS_CODING gol UTR_3_PRIME gol DOWNSTREAM gol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20963081	2R_20963081_SNP [dm3] 2R_25075558_SNP [dm6]	G	A	1.112e^-14	5.361e^-11	UPSTREAM tRNA:CR30198 INTRON gol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D
2R	20963644	2R_20963644_MNP [dm3] 2R_25076121_MNP [dm6]	AGCGACCG	TTATTTGA	1.112e^-14	5.361e^-11	UPSTREAM tRNA:CR30199 & 1 other DOWNSTREAM tRNA:CR30198 INTRON gol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_ttk
2R	20963654	2R_20963654_MNP [dm3] 2R_25076131_MNP [dm6]	TTG	AAC	1.112e^-14	5.361e^-11	UPSTREAM tRNA:CR30199 & 1 other DOWNSTREAM tRNA:CR30198 INTRON gol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_ttk
2R	20963658	2R_20963658_INS [dm3] 2R_25076135_INS [dm6]	T	AAA	1.112e^-14	5.361e^-11	UPSTREAM tRNA:CR30199 & 1 other DOWNSTREAM tRNA:CR30198 INTRON gol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_ttk
2R	20963661	2R_20963661_SNP [dm3] 2R_25076138_SNP [dm6]	T	G	1.112e^-14	5.361e^-11	UPSTREAM tRNA:CR30199 & 1 other DOWNSTREAM tRNA:CR30198 INTRON gol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_ttk
2R	20963663	2R_20963663_MNP [dm3] 2R_25076140_MNP [dm6]	TTT	AAC	1.112e^-14	5.361e^-11	UPSTREAM tRNA:CR30199 & 1 other DOWNSTREAM tRNA:CR30198 INTRON gol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_ttk
2R	20963669	2R_20963669_SNP [dm3] 2R_25076146_SNP [dm6]	T	G	1.112e^-14	5.361e^-11	UPSTREAM tRNA:CR30199 & 1 other DOWNSTREAM tRNA:CR30198 INTRON gol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_ttk
2R	20963670	2R_20963670_SNP [dm3] 2R_25076147_SNP [dm6]	G	T	1.112e^-14	5.361e^-11	UPSTREAM tRNA:CR30199 & 1 other DOWNSTREAM tRNA:CR30198 INTRON gol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_ttk
2R	20963675	2R_20963675_SNP [dm3] 2R_25076152_SNP [dm6]	A	C	1.112e^-14	5.361e^-11	UPSTREAM tRNA:CR30199 & 1 other DOWNSTREAM tRNA:CR30198 INTRON gol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_ttk
2R	20963676	2R_20963676_SNP [dm3] 2R_25076153_SNP [dm6]	C	A	1.112e^-14	5.361e^-11	UPSTREAM tRNA:CR30199 & 1 other DOWNSTREAM tRNA:CR30198 INTRON gol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_ttk
2R	20963679	2R_20963679_MNP [dm3] 2R_25076156_MNP [dm6]	AAA	TTT	1.112e^-14	5.361e^-11	UPSTREAM tRNA:CR30199 & 1 other DOWNSTREAM tRNA:CR30198 INTRON gol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_ttk
2R	20963682	2R_20963682_DEL [dm3] 2R_25076159_DEL [dm6]	ACAG	A	1.112e^-14	5.361e^-11	UPSTREAM tRNA:CR30199 & 1 other DOWNSTREAM tRNA:CR30198 INTRON gol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_ttk
2R	20964377	2R_20964377_SNP [dm3] 2R_25076854_SNP [dm6]	T	C	1.112e^-14	5.361e^-11	UPSTREAM tRNA:CR30200 DOWNSTREAM tRNA:CR30198 & 1 other INTRON gol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_ttk
2R	20964498	2R_20964498_SNP [dm3] 2R_25076975_SNP [dm6]	C	A	1.112e^-14	5.361e^-11	UPSTREAM tRNA:CR30200 DOWNSTREAM tRNA:CR30198 & 1 other INTRON gol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_ttk
2R	20964501	2R_20964501_SNP [dm3] 2R_25076978_SNP [dm6]	A	C	1.112e^-14	5.361e^-11	UPSTREAM tRNA:CR30200 DOWNSTREAM tRNA:CR30198 & 1 other INTRON gol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_ttk
2R	20965152	2R_20965152_SNP [dm3] 2R_25077629_SNP [dm6]	C	T	1.112e^-14	5.361e^-11	SYNONYMOUS_CODING gol DOWNSTREAM tRNA:CR30199 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20966381	2R_20966381_SNP [dm3] 2R_25078858_SNP [dm6]	G	A	1.112e^-14	5.361e^-11	INTRON gol
2R	20966491	2R_20966491_SNP [dm3] 2R_25078968_SNP [dm6]	G	A	1.112e^-14	5.361e^-11	INTRON gol
2R	20968338	2R_20968338_SNP [dm3] 2R_25080815_SNP [dm6]	C	T	1.112e^-14	5.361e^-11	INTRON gol	regulatory region REDfly_CRMs
2R	20970350	2R_20970350_SNP [dm3] 2R_25082827_SNP [dm6]	G	C	1.112e^-14	5.361e^-11	INTRON gol	TF binding site mE1_TFBS_Kr
2R	20970446	2R_20970446_SNP [dm3] 2R_25082923_SNP [dm6]	G	T	1.112e^-14	5.361e^-11	INTRON gol	TF binding site mE1_TFBS_Kr
2R	20971846	2R_20971846_SNP [dm3] 2R_25084323_SNP [dm6]	G	A	1.112e^-14	5.361e^-11	START_GAINED gol UTR_5_PRIME gol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	20972606	2R_20972606_SNP [dm3] 2R_25085083_SNP [dm6]	A	G	1.112e^-14	5.361e^-11	UPSTREAM gol DOWNSTREAM lov INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	20973483	2R_20973483_SNP [dm3] 2R_25085960_SNP [dm6]	C	T	1.112e^-14	5.361e^-11	UTR_3_PRIME lov DOWNSTREAM lov	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	20975118	2R_20975118_SNP [dm3] 2R_25087595_SNP [dm6]	G	A	1.112e^-14	5.361e^-11	SYNONYMOUS_CODING lov	TF binding site mE1_TFBS_chinmo
2R	20975535	2R_20975535_SNP [dm3] 2R_25088012_SNP [dm6]	T	C	1.112e^-14	5.361e^-11	INTRON lov
2R	20976466	2R_20976466_INS [dm3] 2R_25088943_INS [dm6]	A	ACAGTTATAACTA...	1.112e^-14	5.361e^-11	INTRON lov	transposable element FlyBase
2R	20976644	2R_20976644_SNP [dm3] 2R_25089121_SNP [dm6]	T	A	1.112e^-14	5.361e^-11	INTRON lov	transposable element FlyBase
2R	20976665	2R_20976665_SNP [dm3] 2R_25089142_SNP [dm6]	T	A	1.112e^-14	5.361e^-11	INTRON lov	transposable element FlyBase
2R	20976668	2R_20976668_SNP [dm3] 2R_25089145_SNP [dm6]	C	T	1.112e^-14	5.361e^-11	INTRON lov	transposable element FlyBase
2R	20978217	2R_20978217_SNP [dm3] 2R_25090694_SNP [dm6]	T	C	1.112e^-14	5.361e^-11	INTRON lov	transposable element FlyBase
2R	20978360	2R_20978360_SNP [dm3] 2R_25090837_SNP [dm6]	T	A	1.112e^-14	5.361e^-11	INTRON lov	transposable element FlyBase
2R	20978458	2R_20978458_SNP [dm3] 2R_25090935_SNP [dm6]	T	C	1.112e^-14	5.361e^-11	INTRON lov
2R	20979882	2R_20979882_SNP [dm3] 2R_25092359_SNP [dm6]	T	C	1.112e^-14	5.361e^-11	INTRON lov
2R	20979926	2R_20979926_SNP [dm3] 2R_25092403_SNP [dm6]	G	A	1.112e^-14	5.361e^-11	INTRON lov
2R	20980063	2R_20980063_SNP [dm3] 2R_25092540_SNP [dm6]	C	T	1.112e^-14	5.361e^-11	INTRON lov
2R	20980212	2R_20980212_SNP [dm3] 2R_25092689_SNP [dm6]	T	G	1.112e^-14	5.361e^-11	INTRON lov
2R	20980440	2R_20980440_SNP [dm3] 2R_25092917_SNP [dm6]	G	A	1.112e^-14	5.361e^-11	INTRON lov
2R	21130079	2R_21130079_SNP [dm3] 2R_25242556_SNP [dm6]	T	C	1.112e^-14	5.361e^-11	INTRON CG9380
3L	16427136	3L_16427136_SNP [dm3] 3L_16434036_SNP [dm6]	G	C	1.112e^-14	5.361e^-11	INTRON CG33158 & 1 other
3L	18059102	3L_18059102_SNP [dm3] 3L_18066002_SNP [dm6]	A	T	1.112e^-14	5.361e^-11	INTERGENIC
3L	22203706	3L_22203706_SNP [dm3] 3L_22210606_SNP [dm6]	C	G	1.112e^-14	5.361e^-11	INTRON olf413	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	22344519	3L_22344519_SNP [dm3] 3L_22351419_SNP [dm6]	A	T	1.112e^-14	5.361e^-11	INTRON Ten-m
3L	5782179	3L_5782179_SNP [dm3] 3L_5789079_SNP [dm6]	A	C	1.112e^-14	5.361e^-11	DOWNSTREAM Bre1 INTERGENIC
3L	5783466	3L_5783466_SNP [dm3] 3L_5790366_SNP [dm6]	G	T	1.112e^-14	5.361e^-11	UTR_3_PRIME Bre1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	5784728	3L_5784728_SNP [dm3] 3L_5791628_SNP [dm6]	G	A	1.112e^-14	5.361e^-11	SYNONYMOUS_CODING Bre1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7525242	3L_7525242_SNP [dm3] 3L_7532142_SNP [dm6]	G	A	1.112e^-14	5.361e^-11	UPSTREAM lqf INTRON lqf
3L	7527074	3L_7527074_SNP [dm3] 3L_7533974_SNP [dm6]	C	G	1.112e^-14	5.361e^-11	SYNONYMOUS_CODING lqf
3L	9133447	3L_9133447_SNP [dm3] 3L_9140347_SNP [dm6]	C	T	1.112e^-14	5.361e^-11	SYNONYMOUS_CODING nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17908216	3R_17908216_SNP [dm3] 3R_22082494_SNP [dm6]	T	G	1.112e^-14	5.361e^-11	INTRON CG13408
3R	18568155	3R_18568155_SNP [dm3] 3R_22742433_SNP [dm6]	G	A	1.112e^-14	5.361e^-11	SYNONYMOUS_CODING CG6985 DOWNSTREAM vret
X	13156304	X_13156304_SNP [dm3] X_13262271_SNP [dm6]	G	C	1.112e^-14	5.361e^-11	UTR_3_PRIME comt DOWNSTREAM HDAC4
X	17045982	X_17045982_SNP [dm3] X_17151949_SNP [dm6]	G	T	1.112e^-14	5.361e^-11	SYNONYMOUS_CODING xmas-1
3L	9839901	3L_9839901_SNP [dm3] 3L_9846801_SNP [dm6]	T	C	1.115e^-14	5.361e^-11	INTRON RasGAP1
3R	13545523	3R_13545523_SNP [dm3] 3R_17719801_SNP [dm6]	A	C	1.115e^-14	5.361e^-11	INTRON Pxt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16827442	3R_16827442_SNP [dm3] 3R_21001720_SNP [dm6]	G	A	1.115e^-14	5.361e^-11	INTRON Calx
3R	16847534	3R_16847534_SNP [dm3] 3R_21021812_SNP [dm6]	G	A	1.115e^-14	5.361e^-11	INTRON CG17278
3R	4711268	3R_4711268_SNP [dm3] 3R_8885546_SNP [dm6]	C	A	1.115e^-14	5.361e^-11	INTRON pyd
2R	13043257	2R_13043257_SNP [dm3] 2R_17155752_SNP [dm6]	C	A	1.122e^-14	5.361e^-11	UTR_3_PRIME CG17290 DOWNSTREAM CG17290 & 1 other
3L	14893907	3L_14893907_SNP [dm3] 3L_14900807_SNP [dm6]	A	G	1.122e^-14	5.361e^-11	INTERGENIC
3L	16999611	3L_16999611_SNP [dm3] 3L_17006511_SNP [dm6]	C	T	1.122e^-14	5.361e^-11	INTRON CG3764
3L	22301616	3L_22301616_SNP [dm3] 3L_22308516_SNP [dm6]	G	A	1.122e^-14	5.361e^-11	INTRON Ten-m
3L	22364278	3L_22364278_SNP [dm3] 3L_22371178_SNP [dm6]	C	A	1.122e^-14	5.361e^-11	INTRON Ten-m	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	22443416	3L_22443416_DEL [dm3] 3L_22450316_DEL [dm6]	GGGACACTTCACTGCT...	G	1.122e^-14	5.361e^-11	INTERGENIC
3L	22443433	3L_22443433_DEL [dm3] 3L_22450333_DEL [dm6]	GTTAATCAATTAAAACATTT...	G	1.122e^-14	5.361e^-11	INTERGENIC
3L	22489003	3L_22489003_SNP [dm3] 3L_22495903_SNP [dm6]	A	T	1.122e^-14	5.361e^-11	DOWNSTREAM CR45430 INTERGENIC
3R	18152450	3R_18152450_SNP [dm3] 3R_22326728_SNP [dm6]	G	A	1.122e^-14	5.361e^-11	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	9717365	3R_9717365_SNP [dm3] 3R_13891643_SNP [dm6]	G	T	1.122e^-14	5.361e^-11	INTERGENIC
3R	9885047	3R_9885047_SNP [dm3] 3R_14059325_SNP [dm6]	C	T	1.122e^-14	5.361e^-11	INTRON foxo
X	2598169	X_2598169_SNP [dm3] X_2704136_SNP [dm6]	C	T	1.122e^-14	5.361e^-11	UPSTREAM eIF2B-beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	6310642	X_6310642_DEL [dm3] X_6416609_DEL [dm6]	GTGGATG	G	1.122e^-14	5.361e^-11	INTERGENIC
2R	19782458	2R_19782458_SNP [dm3] 2R_23894935_SNP [dm6]	T	C	1.123e^-14	5.361e^-11	START_GAINED Upf3 UTR_5_PRIME Upf3 UPSTREAM CG17658 & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2R	19782531	2R_19782531_SNP [dm3] 2R_23895008_SNP [dm6]	C	T	1.123e^-14	5.361e^-11	UPSTREAM CG17658 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2R	19782920	2R_19782920_SNP [dm3] 2R_23895397_SNP [dm6]	T	C	1.123e^-14	5.361e^-11	SYNONYMOUS_CODING CG17658 UPSTREAM Upf3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	2904670	3L_2904670_SNP [dm3] 3L_2904670_SNP [dm6]	A	T	1.124e^-14	5.361e^-11	INTRON Shab
3R	25032207	3R_25032207_DEL [dm3] 3R_29206485_DEL [dm6]	CACCTTTAGGCATGC...	GTTTATAAAGT...	1.128e^-14	5.368e^-11	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	20911750	2R_20911750_SNP [dm3] 2R_25024227_SNP [dm6]	G	T	1.137e^-14	5.382e^-11	INTRON uzip
X	2535094	X_2535094_INS [dm3] X_2641061_INS [dm6]	C	CACTTTGCC	1.137e^-14	5.382e^-11	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl
3L	2910238	3L_2910238_SNP [dm3] 3L_2910238_SNP [dm6]	T	C	1.160e^-14	5.479e^-11	INTRON Shab
2R	13617273	2R_13617273_SNP [dm3] 2R_17729768_SNP [dm6]	T	C	1.226e^-14	5.718e^-11	INTRON CG4984 & 1 other
2R	13617299	2R_13617299_SNP [dm3] 2R_17729794_SNP [dm6]	G	A	1.226e^-14	5.718e^-11	INTRON CG4984 & 1 other
2R	20946025	2R_20946025_SNP [dm3] 2R_25058502_SNP [dm6]	G	T	1.226e^-14	5.718e^-11	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_prd
2R	20970711	2R_20970711_SNP [dm3] 2R_25083188_SNP [dm6]	A	T	1.226e^-14	5.718e^-11	INTRON gol
2R	20980121	2R_20980121_SNP [dm3] 2R_25092598_SNP [dm6]	T	A	1.226e^-14	5.718e^-11	INTRON lov
3L	8654310	3L_8654310_SNP [dm3] 3L_8661210_SNP [dm6]	C	A	1.230e^-14	5.723e^-11	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18507542	3L_18507542_SNP [dm3] 3L_18514442_SNP [dm6]	T	C	1.392e^-14	6.459e^-11	INTERGENIC
3R	9819663	3R_9819663_SNP [dm3] 3R_13993941_SNP [dm6]	T	C	1.398e^-14	6.471e^-11	INTRON rdx
2R	15153819	2R_15153819_SNP [dm3] 2R_19266314_SNP [dm6]	G	A	1.440e^-14	6.623e^-11	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	15153902	2R_15153902_SNP [dm3] 2R_19266397_SNP [dm6]	C	T	1.440e^-14	6.623e^-11	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Kr
2R	20943381	2R_20943381_SNP [dm3] 2R_25055858_SNP [dm6]	A	C	1.444e^-14	6.623e^-11	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21652673	3R_21652673_SNP [dm3] 3R_25826951_SNP [dm6]	A	G	1.449e^-14	6.623e^-11	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9812865	3R_9812865_DEL [dm3] 3R_13987143_DEL [dm6]	GG	G	1.449e^-14	6.623e^-11	INTRON rdx	TF binding site mE1_TFBS_Trl
3R	14582406	3R_14582406_SNP [dm3] 3R_18756684_SNP [dm6]	A	G	1.455e^-14	6.633e^-11	SYNONYMOUS_CODING CG14299
2L	15961730	2L_15961730_SNP [dm3] 2L_15961730_SNP [dm6]	G	A	1.465e^-14	6.647e^-11	DOWNSTREAM CR43803 INTRON beat-Ib
2L	15963398	2L_15963398_SNP [dm3] 2L_15963398_SNP [dm6]	G	A	1.465e^-14	6.647e^-11	UPSTREAM beat-Ib INTERGENIC
3L	18507540	3L_18507540_SNP [dm3] 3L_18514440_SNP [dm6]	T	A	1.525e^-14	6.903e^-11	INTERGENIC
3R	13244929	3R_13244929_SNP [dm3] 3R_17419207_SNP [dm6]	G	T	1.552e^-14	7.010e^-11	UTR_3_PRIME CG42834
2R	19113303	2R_19113303_SNP [dm3] 2R_23225780_SNP [dm6]	T	C	1.747e^-14	7.443e^-11	INTERGENIC
2R	19113472	2R_19113472_SNP [dm3] 2R_23225949_SNP [dm6]	G	T	1.747e^-14	7.443e^-11	INTERGENIC
2R	19113786	2R_19113786_SNP [dm3] 2R_23226263_SNP [dm6]	T	A	1.747e^-14	7.443e^-11	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19113812	2R_19113812_SNP [dm3] 2R_23226289_SNP [dm6]	G	A	1.747e^-14	7.443e^-11	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	20935983	2R_20935983_SNP [dm3] 2R_25048460_SNP [dm6]	G	T	1.747e^-14	7.443e^-11	INTRON gsb-n
3R	16899512	3R_16899512_SNP [dm3] 3R_21073790_SNP [dm6]	T	A	1.753e^-14	7.443e^-11	UPSTREAM dmrt93B & 1 other INTERGENIC
2L	9405259	2L_9405259_SNP [dm3] 2L_9405259_SNP [dm6]	A	G	1.765e^-14	7.443e^-11	INTRON Shawl
2R	20922698	2R_20922698_SNP [dm3] 2R_25035175_SNP [dm6]	A	C	1.785e^-14	7.443e^-11	INTRON Nplp1
3L	2912161	3L_2912161_SNP [dm3] 3L_2912161_SNP [dm6]	C	T	1.799e^-14	7.443e^-11	INTRON Shab
3L	3071651	3L_3071651_SNP [dm3] 3L_3071651_SNP [dm6]	A	T	1.799e^-14	7.443e^-11	UPSTREAM CG32486 & 1 other INTRON CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	18566757	3R_18566757_SNP [dm3] 3R_22741035_SNP [dm6]	G	A	1.799e^-14	7.443e^-11	UTR_5_PRIME Dcr-1 UPSTREAM CG6985	TF binding site mE1_TFBS_cad
2R	20918809	2R_20918809_SNP [dm3] 2R_25031286_SNP [dm6]	T	G	1.799e^-14	7.443e^-11	UTR_3_PRIME uzip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	20919214	2R_20919214_SNP [dm3] 2R_25031691_SNP [dm6]	T	G	1.799e^-14	7.443e^-11	UTR_3_PRIME uzip UPSTREAM Nplp1	TF binding site BDTNP1_TFBS_twi
2R	20921867	2R_20921867_SNP [dm3] 2R_25034344_SNP [dm6]	A	G	1.799e^-14	7.443e^-11	INTRON Nplp1	TF binding site mE1_TFBS_cnc
2R	20919308	2R_20919308_SNP [dm3] 2R_25031785_SNP [dm6]	T	C	1.800e^-14	7.443e^-11	UPSTREAM Nplp1 DOWNSTREAM uzip INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	20937165	2R_20937165_SNP [dm3] 2R_25049642_SNP [dm6]	A	T	1.800e^-14	7.443e^-11	INTRON gsb-n
2R	20946348	2R_20946348_SNP [dm3] 2R_25058825_SNP [dm6]	T	A	1.800e^-14	7.443e^-11	INTERGENIC	regulatory region FlyBase REDfly_CRMs
2R	20971529	2R_20971529_SNP [dm3] 2R_25084006_SNP [dm6]	T	A	1.800e^-14	7.443e^-11	START_GAINED gol UTR_5_PRIME gol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_Trl
2R	18349410	2R_18349410_SNP [dm3] 2R_22461905_SNP [dm6]	C	A	1.801e^-14	7.443e^-11	INTRON CG10384
2R	20971526	2R_20971526_SNP [dm3] 2R_25084003_SNP [dm6]	G	A	1.801e^-14	7.443e^-11	UTR_5_PRIME gol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_Trl
3L	11746057	3L_11746057_SNP [dm3] 3L_11752957_SNP [dm6]	A	G	1.801e^-14	7.443e^-11	DOWNSTREAM Gr68a INTRON CG6024
X	3899237	X_3899237_SNP [dm3] X_4005204_SNP [dm6]	A	T	1.801e^-14	7.443e^-11	INTERGENIC
3R	10941155	3R_10941155_SNP [dm3] 3R_15115433_SNP [dm6]	G	A	1.803e^-14	7.443e^-11	INTRON CG42788
3L	16010943	3L_16010943_SNP [dm3] 3L_16017843_SNP [dm6]	C	T	1.804e^-14	7.443e^-11	EXON CR43950	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	16011508	3L_16011508_SNP [dm3] 3L_16018408_SNP [dm6]	G	C	1.804e^-14	7.443e^-11	UPSTREAM CR43950 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	10306869	3R_10306869_SNP [dm3] 3R_14481147_SNP [dm6]	T	A	1.804e^-14	7.443e^-11	UTR_5_PRIME cv-c INTRON cv-c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18393831	3R_18393831_DEL [dm3] 3R_22568109_DEL [dm6]	GGCGGCGTTG	G	1.804e^-14	7.443e^-11	INTERGENIC
3R	25599375	3R_25599375_SNP [dm3] 3R_29773653_SNP [dm6]	G	T	1.804e^-14	7.443e^-11	NON_SYNONYMOUS_CODING kay INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	19233758	3R_19233758_DEL [dm3] 3R_23408036_DEL [dm6]	ATTAACTATTTTA...	A	1.805e^-14	7.443e^-11	DOWNSTREAM Ir94e & 1 other INTERGENIC
2R	13042835	2R_13042835_DEL [dm3] 2R_17155330_DEL [dm6]	TAATCGATG	T	1.815e^-14	7.443e^-11	UTR_3_PRIME CG17290 DOWNSTREAM CG17290
3R	21741540	3R_21741540_SNP [dm3] 3R_25915818_SNP [dm6]	C	T	1.816e^-14	7.443e^-11	SYNONYMOUS_CODING CG42235 DOWNSTREAM CG42235 INTRON CG42235
3R	25595658	3R_25595658_SNP [dm3] 3R_29769936_SNP [dm6]	G	A	1.816e^-14	7.443e^-11	INTRON kay
3R	26133014	3R_26133014_SNP [dm3] 3R_30307292_SNP [dm6]	C	T	1.816e^-14	7.443e^-11	UPSTREAM CG34300 INTRON hdc
2R	20911488	2R_20911488_SNP [dm3] 2R_25023965_SNP [dm6]	T	A	1.818e^-14	7.443e^-11	INTRON uzip
2R	20951125	2R_20951125_SNP [dm3] 2R_25063602_SNP [dm6]	C	T	1.818e^-14	7.443e^-11	SYNONYMOUS_CODING gsb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20965370	2R_20965370_SNP [dm3] 2R_25077847_SNP [dm6]	T	A	1.818e^-14	7.443e^-11	NON_SYNONYMOUS_CODING gol DOWNSTREAM tRNA:CR30200	TF binding site mE1_TFBS_sens
2R	20975469	2R_20975469_SNP [dm3] 2R_25087946_SNP [dm6]	G	T	1.818e^-14	7.443e^-11	INTRON lov
2R	20979864	2R_20979864_SNP [dm3] 2R_25092341_SNP [dm6]	T	G	1.818e^-14	7.443e^-11	INTRON lov
3L	21221107	3L_21221107_SNP [dm3] 3L_21228007_SNP [dm6]	C	A	1.818e^-14	7.443e^-11	NON_SYNONYMOUS_CODING Eip78C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16999731	3L_16999731_SNP [dm3] 3L_17006631_SNP [dm6]	A	G	1.818e^-14	7.443e^-11	INTRON CG3764
3R	23048655	3R_23048655_SNP [dm3] 3R_27222933_SNP [dm6]	A	G	1.823e^-14	7.443e^-11	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
3L	22312914	3L_22312914_SNP [dm3] 3L_22319814_SNP [dm6]	C	A	1.824e^-14	7.443e^-11	INTRON Ten-m	TF binding site mE1_TFBS_inv
3L	16971547	3L_16971547_SNP [dm3] 3L_16978447_SNP [dm6]	T	C	1.825e^-14	7.443e^-11	INTRON Exn	TF binding site mE1_TFBS_inv
3R	13584333	3R_13584333_SNP [dm3] 3R_17758611_SNP [dm6]	G	A	1.825e^-14	7.443e^-11	INTRON TyrR
3R	19269961	3R_19269961_SNP [dm3] 3R_23444239_SNP [dm6]	T	G	1.832e^-14	7.443e^-11	INTRON CG4374	TF binding site mE1_TFBS_cad
3L	22194081	3L_22194081_SNP [dm3] 3L_22200981_SNP [dm6]	A	G	1.836e^-14	7.443e^-11	INTRON olf413
3R	13917801	3R_13917801_SNP [dm3] 3R_18092079_SNP [dm6]	T	A	1.836e^-14	7.443e^-11	INTRON sr
2R	19782661	2R_19782661_SNP [dm3] 2R_23895138_SNP [dm6]	G	C	1.844e^-14	7.460e^-11	UTR_5_PRIME CG17658 UPSTREAM Upf3	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
X	6651306	X_6651306_SNP [dm3] X_6757273_SNP [dm6]	G	A	1.864e^-14	7.505e^-11	INTRON CG14438	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	14695550	2R_14695550_SNP [dm3] 2R_18808045_SNP [dm6]	G	A	1.864e^-14	7.505e^-11	DOWNSTREAM CR44468 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
3L	2909883	3L_2909883_SNP [dm3] 3L_2909883_SNP [dm6]	G	A	1.880e^-14	7.556e^-11	INTRON Shab
2R	18626877	2R_18626877_SNP [dm3] 2R_22739372_SNP [dm6]	C	T	1.952e^-14	7.825e^-11	INTRON jbug
3L	9274588	3L_9274588_SNP [dm3] 3L_9281488_SNP [dm6]	C	T	1.990e^-14	7.833e^-11	INTRON GluRIB
2R	20940175	2R_20940175_SNP [dm3] 2R_25052652_SNP [dm6]	A	G	1.990e^-14	7.833e^-11	UPSTREAM gsb-n INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20973459	2R_20973459_SNP [dm3] 2R_25085936_SNP [dm6]	T	C	1.990e^-14	7.833e^-11	UTR_3_PRIME lov DOWNSTREAM lov	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	7941448	3L_7941448_SNP [dm3] 3L_7948348_SNP [dm6]	T	C	1.990e^-14	7.833e^-11	UTR_5_PRIME exex	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20932687	2R_20932687_SNP [dm3] 2R_25045164_SNP [dm6]	T	C	1.996e^-14	7.833e^-11	INTRON gsb-n	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	2377991	3L_2377991_SNP [dm3] 3L_2377991_SNP [dm6]	C	A	2.006e^-14	7.833e^-11	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16966730	2R_16966730_SNP [dm3] 2R_21079225_SNP [dm6]	T	C	2.008e^-14	7.833e^-11	INTRON Treh
2R	16966881	2R_16966881_DEL [dm3] 2R_21079376_DEL [dm6]	TCCCCCTGTTGAACGATTTC...	T	2.008e^-14	7.833e^-11	INTRON Treh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16966907	2R_16966907_SNP [dm3] 2R_21079402_SNP [dm6]	T	A	2.008e^-14	7.833e^-11	INTRON Treh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16967976	2R_16967976_SNP [dm3] 2R_21080471_SNP [dm6]	A	G	2.008e^-14	7.833e^-11	UPSTREAM Treh INTRON Treh
2R	16968011	2R_16968011_SNP [dm3] 2R_21080506_SNP [dm6]	G	T	2.008e^-14	7.833e^-11	UPSTREAM Treh INTRON Treh
2R	16972045	2R_16972045_SNP [dm3] 2R_21084540_SNP [dm6]	T	G	2.008e^-14	7.833e^-11	UTR_5_PRIME Treh INTRON Treh	TF binding site mE1_TFBS_cad
2R	16972262	2R_16972262_SNP [dm3] 2R_21084757_SNP [dm6]	C	T	2.008e^-14	7.833e^-11	INTRON Treh	TF binding site mE1_TFBS_cad
X	13849160	X_13849160_SNP [dm3] X_13955127_SNP [dm6]	T	A	2.017e^-14	7.851e^-11	UPSTREAM CG11068 INTRON mamo
3L	13621091	3L_13621091_SNP [dm3] 3L_13627991_SNP [dm6]	G	T	2.308e^-14	8.965e^-11	INTRON bru-3
3R	4926543	3R_4926543_SNP [dm3] 3R_9100821_SNP [dm6]	A	C	2.352e^-14	9.114e^-11	INTRON pum
3L	18187075	3L_18187075_SNP [dm3] 3L_18193975_SNP [dm6]	A	G	2.378e^-14	9.196e^-11	INTERGENIC
3R	9170317	3R_9170317_SNP [dm3] 3R_13344595_SNP [dm6]	A	C	2.386e^-14	9.212e^-11	SYNONYMOUS_CODING PK2-R1	TF binding site mE1_TFBS_chinmo
2R	20972941	2R_20972941_SNP [dm3] 2R_25085418_SNP [dm6]	C	A	2.503e^-14	9.642e^-11	DOWNSTREAM lov INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	19113248	2R_19113248_SNP [dm3] 2R_23225725_SNP [dm6]	G	A	2.735e^-14	1.051e^-10	INTERGENIC
2R	10112924	2R_10112924_SNP [dm3] 2R_14225419_SNP [dm6]	G	T	2.754e^-14	1.056e^-10	INTRON CG8468	TF binding site BDTNP1_TFBS_twi
2R	9756454	2R_9756454_DEL [dm3] 2R_13868949_DEL [dm6]	ATGCTAGACTGTTAAACAAA...	A	2.859e^-14	1.087e^-10	INTRON shot
3R	14332079	3R_14332079_SNP [dm3] 3R_18506357_SNP [dm6]	A	T	2.909e^-14	1.087e^-10	INTRON fru
3R	14678263	3R_14678263_SNP [dm3] 3R_18852541_SNP [dm6]	A	T	2.909e^-14	1.087e^-10	UPSTREAM CG31226 INTERGENIC
3R	19698612	3R_19698612_INS [dm3] 3R_23872890_INS [dm6]	G	GC	2.909e^-14	1.087e^-10	INTRON Pli	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23047985	3R_23047985_INS [dm3] 3R_27222263_INS [dm6]	A	ACAGAAA	2.909e^-14	1.087e^-10	INTERGENIC	TF binding site mE1_TFBS_cad
3R	25750374	3R_25750374_SNP [dm3] 3R_29924652_SNP [dm6]	C	A	2.913e^-14	1.087e^-10	UPSTREAM Jon99Cii DOWNSTREAM Jon99Ci INTERGENIC
2R	20981491	2R_20981491_SNP [dm3] 2R_25093968_SNP [dm6]	A	T	2.915e^-14	1.087e^-10	INTRON lov
2R	21048637	2R_21048637_SNP [dm3] 2R_25161114_SNP [dm6]	A	T	2.915e^-14	1.087e^-10	INTERGENIC
2R	21066612	2R_21066612_SNP [dm3] 2R_25179089_SNP [dm6]	C	T	2.915e^-14	1.087e^-10	INTERGENIC
2R	21131719	2R_21131719_SNP [dm3] 2R_25244196_SNP [dm6]	G	A	2.915e^-14	1.087e^-10	INTRON CG9380
3R	17897180	3R_17897180_SNP [dm3] 3R_22071458_SNP [dm6]	A	T	2.922e^-14	1.087e^-10	INTRON how
3R	9411630	3R_9411630_SNP [dm3] 3R_13585908_SNP [dm6]	C	G	2.922e^-14	1.087e^-10	INTERGENIC
3R	10939957	3R_10939957_SNP [dm3] 3R_15114235_SNP [dm6]	C	T	2.942e^-14	1.087e^-10	INTRON CG42788
2R	20781489	2R_20781489_SNP [dm3] 2R_24893966_SNP [dm6]	A	C	2.944e^-14	1.087e^-10	INTRON NaCP60E	TF binding site mE1_TFBS_chinmo
2R	20964201	2R_20964201_SNP [dm3] 2R_25076678_SNP [dm6]	G	A	2.944e^-14	1.087e^-10	UPSTREAM tRNA:CR30199 & 1 other DOWNSTREAM tRNA:CR30198 INTRON gol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_ttk
3R	18393844	3R_18393844_SNP [dm3] 3R_22568122_SNP [dm6]	G	T	2.950e^-14	1.087e^-10	INTERGENIC
3R	19698543	3R_19698543_SNP [dm3] 3R_23872821_SNP [dm6]	G	A	2.950e^-14	1.087e^-10	INTRON Pli	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2912258	3L_2912258_SNP [dm3] 3L_2912258_SNP [dm6]	G	A	2.950e^-14	1.087e^-10	INTRON Shab
2R	21101880	2R_21101880_SNP [dm3] 2R_25214357_SNP [dm6]	C	A	2.956e^-14	1.087e^-10	INTRON CG9380	regulatory region FlyBase TF binding site BDTNP1_TFBS_z mE1_TFBS_kn mE1_TFBS_Kr
3L	22419832	3L_22419832_SNP [dm3] 3L_22426732_SNP [dm6]	A	G	2.972e^-14	1.087e^-10	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	22439138	3L_22439138_SNP [dm3] 3L_22446038_SNP [dm6]	G	A	2.972e^-14	1.087e^-10	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	3272130	3R_3272130_SNP [dm3] 3R_7446408_SNP [dm6]	C	T	2.972e^-14	1.087e^-10	INTERGENIC
2R	20927759	2R_20927759_SNP [dm3] 2R_25040236_SNP [dm6]	A	G	2.975e^-14	1.087e^-10	UTR_3_PRIME Nplp1 DOWNSTREAM gsb-n & 1 other
3L	21221002	3L_21221002_SNP [dm3] 3L_21227902_SNP [dm6]	T	A	2.975e^-14	1.087e^-10	NON_SYNONYMOUS_CODING Eip78C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17908236	3R_17908236_SNP [dm3] 3R_22082514_SNP [dm6]	T	C	2.990e^-14	1.091e^-10	INTRON CG13408
2L	1161905	2L_1161905_DEL [dm3] 2L_1161905_DEL [dm6]	TA	T	3.037e^-14	1.106e^-10	INTRON CG5080	TF binding site mE1_TFBS_chinmo
3R	16847751	3R_16847751_MNP [dm3] 3R_21022029_MNP [dm6]	AAT	TTC	3.087e^-14	1.122e^-10	INTRON CG17278
3L	5199271	3L_5199271_SNP [dm3] 3L_5206171_SNP [dm6]	G	A	3.140e^-14	1.134e^-10	INTRON shep
3L	5201539	3L_5201539_SNP [dm3] 3L_5208439_SNP [dm6]	C	G	3.140e^-14	1.134e^-10	INTRON shep
3L	5201553	3L_5201553_SNP [dm3] 3L_5208453_SNP [dm6]	A	G	3.140e^-14	1.134e^-10	INTRON shep
2R	16971969	2R_16971969_SNP [dm3] 2R_21084464_SNP [dm6]	C	A	3.186e^-14	1.147e^-10	UTR_5_PRIME Treh INTRON Treh	TF binding site mE1_TFBS_cad
2R	16971993	2R_16971993_SNP [dm3] 2R_21084488_SNP [dm6]	C	A	3.186e^-14	1.147e^-10	SPLICE_SITE_REGION Treh UTR_5_PRIME Treh INTRON Treh	TF binding site mE1_TFBS_cad
2R	16972266	2R_16972266_SNP [dm3] 2R_21084761_SNP [dm6]	G	A	3.241e^-14	1.164e^-10	INTRON Treh	TF binding site mE1_TFBS_cad
X	11737923	X_11737923_SNP [dm3] X_11843890_SNP [dm6]	T	A	3.247e^-14	1.164e^-10	SYNONYMOUS_CODING CG15740	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	16966448	2R_16966448_SNP [dm3] 2R_21078943_SNP [dm6]	T	G	3.279e^-14	1.171e^-10	INTRON Treh
3R	10941436	3R_10941436_SNP [dm3] 3R_15115714_SNP [dm6]	C	T	3.279e^-14	1.171e^-10	INTRON CG42788
2R	13642783	2R_13642783_SNP [dm3] 2R_17755278_SNP [dm6]	T	G	3.672e^-14	1.309e^-10	SYNONYMOUS_CODING CG6385	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5180913	3R_5180913_SNP [dm3] 3R_9355191_SNP [dm6]	A	T	3.757e^-14	1.336e^-10	UPSTREAM snoRNA:Me18S-G1358b & 2 others DOWNSTREAM snoRNA:Me18S-G1358a INTRON CG45050
2R	21134308	2R_21134308_SNP [dm3] 2R_25246785_SNP [dm6]	G	A	3.818e^-14	1.348e^-10	NON_SYNONYMOUS_CODING CG30429 INTRON CG9380	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	21135131	2R_21135131_SNP [dm3] 2R_25247608_SNP [dm6]	T	C	3.818e^-14	1.348e^-10	DOWNSTREAM CG30429 INTRON CG9380
2R	21135213	2R_21135213_SNP [dm3] 2R_25247690_SNP [dm6]	A	T	3.818e^-14	1.348e^-10	DOWNSTREAM CG30429 INTRON CG9380
2R	21135282	2R_21135282_SNP [dm3] 2R_25247759_SNP [dm6]	G	A	3.818e^-14	1.348e^-10	DOWNSTREAM CG30429 INTRON CG9380
3R	25996725	3R_25996725_SNP [dm3] 3R_30171003_SNP [dm6]	C	T	3.860e^-14	1.360e^-10	NON_SYNONYMOUS_CODING CG31028 DOWNSTREAM Mlc2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16914313	2R_16914313_DEL [dm3] 2R_21026808_DEL [dm6]	CGATGCTAGTGC...	C	3.902e^-14	1.371e^-10	DOWNSTREAM CG9350 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	1821909	3R_1821909_SNP [dm3] 3R_5996187_SNP [dm6]	C	T	3.904e^-14	1.371e^-10	UPSTREAM CR44928 INTERGENIC
2R	20977542	2R_20977542_DEL [dm3] 2R_25090019_DEL [dm6]	TC	T	4.091e^-14	1.433e^-10	INTRON lov	transposable element FlyBase
2R	6268574	2R_6268574_SNP [dm3] 2R_10381069_SNP [dm6]	T	C	4.385e^-14	1.534e^-10	UPSTREAM Ir47a INTRON CG42732
3R	12706109	3R_12706109_SNP [dm3] 3R_16880387_SNP [dm6]	T	A	4.544e^-14	1.586e^-10	INTRON iab-8
2R	19539796	2R_19539796_SNP [dm3] 2R_23652273_SNP [dm6]	A	T	4.617e^-14	1.609e^-10	INTRON retn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3R	13788544	3R_13788544_SNP [dm3] 3R_17962822_SNP [dm6]	T	A	4.712e^-14	1.629e^-10	INTRON cpo
3R	13950205	3R_13950205_SNP [dm3] 3R_18124483_SNP [dm6]	G	A	4.712e^-14	1.629e^-10	INTRON sr	TF binding site BDTNP1_TFBS_dl
3R	8410021	3R_8410021_SNP [dm3] 3R_12584299_SNP [dm6]	T	G	4.712e^-14	1.629e^-10	INTRON Octbeta2R
2R	20918059	2R_20918059_SNP [dm3] 2R_25030536_SNP [dm6]	G	T	4.720e^-14	1.629e^-10	UTR_3_PRIME uzip DOWNSTREAM uzip	TF binding site BDTNP1_TFBS_twi
2R	21110985	2R_21110985_INS [dm3] 2R_25223462_INS [dm6]	T	TCGTCTTTTTCGTCTTC...	4.720e^-14	1.629e^-10	INTRON CG9380	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16432293	X_16432293_SNP [dm3] X_16538260_SNP [dm6]	G	A	4.756e^-14	1.636e^-10	DOWNSTREAM CG9903 INTERGENIC
3R	8409939	3R_8409939_SNP [dm3] 3R_12584217_SNP [dm6]	T	C	4.757e^-14	1.636e^-10	INTRON Octbeta2R	TF binding site mE1_TFBS_sbb
2R	21080782	2R_21080782_SNP [dm3] 2R_25193259_SNP [dm6]	G	A	4.769e^-14	1.637e^-10	INTRON CG9380	TF binding site BDTNP1_TFBS_da
3L	22435648	3L_22435648_SNP [dm3] 3L_22442548_SNP [dm6]	A	C	4.815e^-14	1.650e^-10	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9164661	3R_9164661_SNP [dm3] 3R_13338939_SNP [dm6]	T	C	4.831e^-14	1.652e^-10	INTRON PK2-R1	insulator Insulator_Class_II.mE01
3R	3272172	3R_3272172_SNP [dm3] 3R_7446450_SNP [dm6]	C	G	4.865e^-14	1.661e^-10	INTERGENIC
3R	25750350	3R_25750350_SNP [dm3] 3R_29924628_SNP [dm6]	A	G	5.204e^-14	1.770e^-10	UPSTREAM Jon99Cii DOWNSTREAM Jon99Ci INTERGENIC
2R	16964709	2R_16964709_DEL [dm3] 2R_21077204_DEL [dm6]	GTTCACCATG	G	5.205e^-14	1.770e^-10	INTRON Treh	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	2759571	X_2759571_SNP [dm3] X_2865538_SNP [dm6]	C	T	6.065e^-14	2.059e^-10	INTRON kirre
3R	8477836	3R_8477836_SNP [dm3] 3R_12652114_SNP [dm6]	C	A	6.261e^-14	2.120e^-10	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_sens
2R	21135387	2R_21135387_SNP [dm3] 2R_25247864_SNP [dm6]	T	A	6.289e^-14	2.120e^-10	DOWNSTREAM CG30429 INTRON CG9380
2R	21135950	2R_21135950_SNP [dm3] 2R_25248427_SNP [dm6]	C	T	6.289e^-14	2.120e^-10	DOWNSTREAM CG30429 & 1 other INTRON CG9380
3R	8478837	3R_8478837_SNP [dm3] 3R_12653115_SNP [dm6]	G	T	6.291e^-14	2.120e^-10	DOWNSTREAM Dtg INTERGENIC
2R	17941614	2R_17941614_SNP [dm3] 2R_22054109_SNP [dm6]	G	T	6.393e^-14	2.151e^-10	INTERGENIC
2R	721573	2R_721573_SNP [dm3] 2R_4834068_SNP [dm6]	C	A	6.532e^-14	2.194e^-10	INTERGENIC	transposable element FlyBase
2R	20935086	2R_20935086_SNP [dm3] 2R_25047563_SNP [dm6]	T	C	7.002e^-14	2.347e^-10	INTRON gsb-n	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3R	8397161	3R_8397161_SNP [dm3] 3R_12571439_SNP [dm6]	T	C	7.784e^-14	2.604e^-10	INTRON Octbeta2R
3L	12836357	3L_12836357_SNP [dm3] 3L_12843257_SNP [dm6]	A	G	7.832e^-14	2.616e^-10	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	8604335	3R_8604335_INS [dm3] 3R_12778613_INS [dm6]	T	TT	7.919e^-14	2.640e^-10	INTRON beat-Vc
2L	13326053	2L_13326053_SNP [dm3] 2L_13326053_SNP [dm6]	C	A	9.540e^-14	3.175e^-10	INTRON CG43778
3R	14994539	3R_14994539_SNP [dm3] 3R_19168817_SNP [dm6]	C	G	9.830e^-14	3.266e^-10	SYNONYMOUS_CODING sqz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8476955	3R_8476955_SNP [dm3] 3R_12651233_SNP [dm6]	C	A	1.028e^-13	3.409e^-10	SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_bab1 mE1_TFBS_sens
3R	5805752	3R_5805752_INS [dm3] 3R_9980030_INS [dm6]	T	TT	1.032e^-13	3.417e^-10	INTRON Glut4EF	TF binding site mE1_TFBS_Trl
2R	17941628	2R_17941628_SNP [dm3] 2R_22054123_SNP [dm6]	G	A	1.053e^-13	3.478e^-10	INTERGENIC
2R	16686909	2R_16686909_SNP [dm3] 2R_20799404_SNP [dm6]	G	T	1.174e^-13	3.873e^-10	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25750329	3R_25750329_SNP [dm3] 3R_29924607_SNP [dm6]	T	G	1.211e^-13	3.987e^-10	UTR_5_PRIME Jon99Cii DOWNSTREAM Jon99Ci
3L	22215161	3L_22215161_INS [dm3] 3L_22222061_INS [dm6]	T	TTGCTATAAGATCTACTTCA...	1.310e^-13	4.306e^-10	INTRON olf413	TF binding site mE1_TFBS_chinmo
3R	5805012	3R_5805012_SNP [dm3] 3R_9979290_SNP [dm6]	A	C	1.387e^-13	4.551e^-10	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	19214009	X_19214009_SNP [dm3] X_19319976_SNP [dm6]	C	T	1.510e^-13	4.947e^-10	INTRON out
2R	20931530	2R_20931530_SNP [dm3] 2R_25044007_SNP [dm6]	A	G	1.808e^-13	5.912e^-10	INTRON gsb-n
2R	16964879	2R_16964879_SNP [dm3] 2R_21077374_SNP [dm6]	A	G	1.811e^-13	5.912e^-10	INTRON Treh
3R	23260188	3R_23260188_DEL [dm3] 3R_27434466_DEL [dm6]	CCAC	C	1.993e^-13	6.495e^-10	INTRON side	TF binding site BDTNP1_TFBS_twi
2R	14743000	2R_14743000_SNP [dm3] 2R_18855495_SNP [dm6]	A	G	2.089e^-13	6.795e^-10	UPSTREAM Jheh1 DOWNSTREAM Jheh2 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	20968133	2R_20968133_SNP [dm3] 2R_25080610_SNP [dm6]	T	A	2.131e^-13	6.907e^-10	INTRON gol	regulatory region REDfly_CRMs
2R	20968182	2R_20968182_SNP [dm3] 2R_25080659_SNP [dm6]	C	A	2.131e^-13	6.907e^-10	INTRON gol	regulatory region REDfly_CRMs
3L	22367821	3L_22367821_SNP [dm3] 3L_22374721_SNP [dm6]	C	T	2.208e^-13	7.145e^-10	INTRON Ten-m	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13049053	2R_13049053_SNP [dm3] 2R_17161548_SNP [dm6]	A	G	2.347e^-13	7.580e^-10	UPSTREAM CG30457 INTERGENIC
3L	22590699	3L_22590699_SNP [dm3] 3L_22597599_SNP [dm6]	A	G	2.593e^-13	8.360e^-10	INTRON CG14459
2L	14418268	2L_14418268_SNP [dm3] 2L_14418268_SNP [dm6]	T	G	2.901e^-13	9.337e^-10	UPSTREAM Pburs INTERGENIC
3L	11864176	3L_11864176_SNP [dm3] 3L_11871076_SNP [dm6]	T	C	3.319e^-13	1.067e^-9	SYNONYMOUS_CODING CG5906 INTRON CG44837
2R	18623722	2R_18623722_SNP [dm3] 2R_22736217_SNP [dm6]	G	A	3.848e^-13	1.234e^-9	INTRON jbug
2L	2278600	2L_2278600_SNP [dm3] 2L_2278600_SNP [dm6]	G	A	4.735e^-13	1.516e^-9	INTRON CR43753 EXON CR43753
2R	13642711	2R_13642711_SNP [dm3] 2R_17755206_SNP [dm6]	G	A	4.886e^-13	1.562e^-9	SYNONYMOUS_CODING CG6385	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7958605	2R_7958605_SNP [dm3] 2R_12071100_SNP [dm6]	G	A	4.977e^-13	1.587e^-9	INTRON CG8888
2R	7958597	2R_7958597_DEL [dm3] 2R_12071092_DEL [dm6]	CC	C	4.981e^-13	1.587e^-9	INTRON CG8888
2R	12345679	2R_12345679_DEL [dm3] 2R_16458174_DEL [dm6]	TT	T	5.065e^-13	1.611e^-9	INTERGENIC
2R	15386791	2R_15386791_DEL [dm3] 2R_19499286_DEL [dm6]	ATAACCCTTTGTTA...	A	5.116e^-13	1.624e^-9	DOWNSTREAM CG16926 INTRON CG15120
3R	22895123	3R_22895123_SNP [dm3] 3R_27069401_SNP [dm6]	C	G	5.249e^-13	1.664e^-9	UTR_5_PRIME spz	TF binding site BDTNP1_TFBS_dl
3L	5465781	3L_5465781_SNP [dm3] 3L_5472681_SNP [dm6]	C	T	5.267e^-13	1.664e^-9	INTERGENIC
3L	5465782	3L_5465782_SNP [dm3] 3L_5472682_SNP [dm6]	C	T	5.267e^-13	1.664e^-9	INTERGENIC
3L	5194663	3L_5194663_SNP [dm3] 3L_5201563_SNP [dm6]	T	C	5.396e^-13	1.701e^-9	UPSTREAM shep INTRON shep
3L	13834672	3L_13834672_MNP [dm3] 3L_13841572_MNP [dm6]	AAA	TCC	6.449e^-13	2.023e^-9	DOWNSTREAM CG8750 INTRON CG8757	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13834681	3L_13834681_SNP [dm3] 3L_13841581_SNP [dm6]	A	T	6.449e^-13	2.023e^-9	DOWNSTREAM CG8750 INTRON CG8757	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13834684	3L_13834684_SNP [dm3] 3L_13841584_SNP [dm6]	G	T	6.449e^-13	2.023e^-9	DOWNSTREAM CG8750 INTRON CG8757	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15362706	2R_15362706_SNP [dm3] 2R_19475201_SNP [dm6]	C	T	7.014e^-13	2.197e^-9	INTRON par-1
2R	12063406	2R_12063406_SNP [dm3] 2R_16175901_SNP [dm6]	G	T	7.589e^-13	2.373e^-9	SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad
2L	13326044	2L_13326044_SNP [dm3] 2L_13326044_SNP [dm6]	C	A	7.628e^-13	2.381e^-9	INTRON CG43778
2R	16047690	2R_16047690_SNP [dm3] 2R_20160185_SNP [dm6]	G	T	7.710e^-13	2.403e^-9	INTERGENIC
3L	15992564	3L_15992564_SNP [dm3] 3L_15999464_SNP [dm6]	G	A	7.800e^-13	2.427e^-9	INTRON CG5830
2R	15335619	2R_15335619_SNP [dm3] 2R_19448114_SNP [dm6]	G	T	7.879e^-13	2.447e^-9	SYNONYMOUS_CODING betaTub56D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16036872	2R_16036872_SNP [dm3] 2R_20149367_SNP [dm6]	A	G	7.984e^-13	2.476e^-9	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12345664	2R_12345664_SNP [dm3] 2R_16458159_SNP [dm6]	C	T	8.003e^-13	2.477e^-9	INTERGENIC
3R	12161596	3R_12161596_SNP [dm3] 3R_16335874_SNP [dm6]	C	T	8.046e^-13	2.487e^-9	INTRON Sulf1	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3L	8794508	3L_8794508_INS [dm3] 3L_8801408_INS [dm6]	A	ACACATTTACAAA...	8.146e^-13	2.512e^-9	UPSTREAM CG13310 DOWNSTREAM CG13311 INTERGENIC
2R	20977621	2R_20977621_DEL [dm3] 2R_25090098_DEL [dm6]	TAAAGT	T	8.154e^-13	2.512e^-9	INTRON lov	transposable element FlyBase
3R	9866453	3R_9866453_SNP [dm3] 3R_14040731_SNP [dm6]	G	T	8.446e^-13	2.597e^-9	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16446640	2R_16446640_SNP [dm3] 2R_20559135_SNP [dm6]	G	A	8.610e^-13	2.643e^-9	SYNONYMOUS_CODING lms DOWNSTREAM Mgat1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12636119	2R_12636119_DEL [dm3] 2R_16748614_DEL [dm6]	TAT	T	9.482e^-13	2.906e^-9	UPSTREAM Acp53C14a DOWNSTREAM Acp53C14b INTERGENIC
2R	12964110	2R_12964110_SNP [dm3] 2R_17076605_SNP [dm6]	C	T	1.083e^-12	3.313e^-9	UPSTREAM CG30460 INTRON CG30460	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12063382	2R_12063382_SNP [dm3] 2R_16175877_SNP [dm6]	G	C	1.131e^-12	3.439e^-9	SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad
2R	13367418	2R_13367418_SNP [dm3] 2R_17479913_SNP [dm6]	G	T	1.131e^-12	3.439e^-9	SYNONYMOUS_CODING veil UTR_3_PRIME CG43110	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15320167	2R_15320167_SNP [dm3] 2R_19432662_SNP [dm6]	T	A	1.131e^-12	3.439e^-9	SYNONYMOUS_CODING Fak INTRON Fak
2R	15386687	2R_15386687_SNP [dm3] 2R_19499182_SNP [dm6]	C	T	1.131e^-12	3.439e^-9	INTRON CG15120
3R	13934491	3R_13934491_SNP [dm3] 3R_18108769_SNP [dm6]	C	T	1.213e^-12	3.681e^-9	UPSTREAM tRNA:CR31518 DOWNSTREAM tRNA:CR31242 INTRON sr	TF binding site BDTNP1_TFBS_dl
2R	15335556	2R_15335556_SNP [dm3] 2R_19448051_SNP [dm6]	G	A	1.527e^-12	4.628e^-9	SYNONYMOUS_CODING betaTub56D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1997072	2L_1997072_SNP [dm3] 2L_1997072_SNP [dm6]	A	T	1.541e^-12	4.655e^-9	DOWNSTREAM CG33543 INTERGENIC
2L	1997081	2L_1997081_SNP [dm3] 2L_1997081_SNP [dm6]	T	G	1.541e^-12	4.655e^-9	DOWNSTREAM CG33543 INTERGENIC
3L	19293409	3L_19293409_SNP [dm3] 3L_19300309_SNP [dm6]	G	C	1.971e^-12	5.943e^-9	UTR_3_PRIME pip DOWNSTREAM pip INTRON pip
2R	19113232	2R_19113232_SNP [dm3] 2R_23225709_SNP [dm6]	C	T	1.983e^-12	5.969e^-9	INTERGENIC
3L	10320753	3L_10320753_SNP [dm3] 3L_10327653_SNP [dm6]	C	T	2.184e^-12	6.565e^-9	DOWNSTREAM CR45244 INTERGENIC
3L	20646364	3L_20646364_SNP [dm3] 3L_20653264_SNP [dm6]	A	T	3.620e^-12	1.086e^-8	EXON CR44685	TF binding site BDTNP1_TFBS_twi
3L	12106386	3L_12106386_SNP [dm3] 3L_12113286_SNP [dm6]	A	G	4.774e^-12	1.430e^-8	INTERGENIC
2R	20940238	2R_20940238_SNP [dm3] 2R_25052715_SNP [dm6]	C	T	5.415e^-12	1.620e^-8	UPSTREAM gsb-n INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	20643294	3L_20643294_SNP [dm3] 3L_20650194_SNP [dm6]	A	T	5.750e^-12	1.717e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2348236	2L_2348236_SNP [dm3] 2L_2348236_SNP [dm6]	A	G	6.414e^-12	1.912e^-8	INTRON CG9967 & 1 other
3L	12420285	3L_12420285_SNP [dm3] 3L_12427185_SNP [dm6]	G	T	7.576e^-12	2.255e^-8	INTRON toe	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	2615605	X_2615605_SNP [dm3] X_2721572_SNP [dm6]	T	A	7.786e^-12	2.314e^-8	NON_SYNONYMOUS_CODING fs_1_Yb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	13642732	2R_13642732_SNP [dm3] 2R_17755227_SNP [dm6]	A	G	7.937e^-12	2.351e^-8	SYNONYMOUS_CODING CG6385	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13642786	2R_13642786_SNP [dm3] 2R_17755281_SNP [dm6]	G	A	7.937e^-12	2.351e^-8	SYNONYMOUS_CODING CG6385	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6830357	3L_6830357_INS [dm3] 3L_6837257_INS [dm6]	A	ACAGTGCCC	1.052e^-11	3.113e^-8	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8809798	3L_8809798_SNP [dm3] 3L_8816698_SNP [dm6]	T	A	1.344e^-11	3.968e^-8	INTERGENIC
3L	12404486	3L_12404486_SNP [dm3] 3L_12411386_SNP [dm6]	C	G	1.634e^-11	4.438e^-8	INTRON CG32103
3L	12404547	3L_12404547_SNP [dm3] 3L_12411447_SNP [dm6]	G	A	1.634e^-11	4.438e^-8	INTRON CG32103
3L	12404568	3L_12404568_SNP [dm3] 3L_12411468_SNP [dm6]	T	A	1.634e^-11	4.438e^-8	INTRON CG32103
3L	12405671	3L_12405671_SNP [dm3] 3L_12412571_SNP [dm6]	T	C	1.634e^-11	4.438e^-8	INTRON CG32103
3L	12406531	3L_12406531_SNP [dm3] 3L_12413431_SNP [dm6]	A	C	1.634e^-11	4.438e^-8	INTRON CG32103
3L	12409224	3L_12409224_SNP [dm3] 3L_12416124_SNP [dm6]	T	G	1.634e^-11	4.438e^-8	INTRON ArfGAP1	TF binding site mE1_TFBS_chinmo
3L	12409268	3L_12409268_SNP [dm3] 3L_12416168_SNP [dm6]	T	C	1.634e^-11	4.438e^-8	INTRON ArfGAP1	TF binding site mE1_TFBS_chinmo
3L	12410164	3L_12410164_SNP [dm3] 3L_12417064_SNP [dm6]	G	A	1.634e^-11	4.438e^-8	SYNONYMOUS_CODING ArfGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12410583	3L_12410583_SNP [dm3] 3L_12417483_SNP [dm6]	T	C	1.634e^-11	4.438e^-8	UTR_5_PRIME ArfGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	12413421	3L_12413421_SNP [dm3] 3L_12420321_SNP [dm6]	A	G	1.634e^-11	4.438e^-8	INTERGENIC
3L	12413618	3L_12413618_SNP [dm3] 3L_12420518_SNP [dm6]	T	C	1.634e^-11	4.438e^-8	INTERGENIC
3L	12414019	3L_12414019_SNP [dm3] 3L_12420919_SNP [dm6]	C	T	1.634e^-11	4.438e^-8	INTERGENIC
3L	12415332	3L_12415332_SNP [dm3] 3L_12422232_SNP [dm6]	A	C	1.634e^-11	4.438e^-8	DOWNSTREAM toe INTERGENIC
3L	12415424	3L_12415424_INS [dm3] 3L_12422324_INS [dm6]	A	TG	1.634e^-11	4.438e^-8	DOWNSTREAM toe INTERGENIC
3L	12416445	3L_12416445_SNP [dm3] 3L_12423345_SNP [dm6]	C	G	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12417294	3L_12417294_SNP [dm3] 3L_12424194_SNP [dm6]	A	T	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417314	3L_12417314_SNP [dm3] 3L_12424214_SNP [dm6]	A	T	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417319	3L_12417319_DEL [dm3] 3L_12424219_DEL [dm6]	ATT	A	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417323	3L_12417323_SNP [dm3] 3L_12424223_SNP [dm6]	G	A	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417324	3L_12417324_SNP [dm3] 3L_12424224_SNP [dm6]	G	A	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417326	3L_12417326_MNP [dm3] 3L_12424226_MNP [dm6]	ATATT	TGCAC	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417349	3L_12417349_SNP [dm3] 3L_12424249_SNP [dm6]	C	A	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417352	3L_12417352_SNP [dm3] 3L_12424252_SNP [dm6]	T	C	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417354	3L_12417354_SNP [dm3] 3L_12424254_SNP [dm6]	G	T	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417355	3L_12417355_SNP [dm3] 3L_12424255_SNP [dm6]	C	A	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417358	3L_12417358_SNP [dm3] 3L_12424258_SNP [dm6]	A	T	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417369	3L_12417369_SNP [dm3] 3L_12424269_SNP [dm6]	C	G	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417375	3L_12417375_SNP [dm3] 3L_12424275_SNP [dm6]	T	G	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417376	3L_12417376_INS [dm3] 3L_12424276_INS [dm6]	G	GAG	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417382	3L_12417382_INS [dm3] 3L_12424282_INS [dm6]	C	CCTAA	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417387	3L_12417387_INS [dm3] 3L_12424287_INS [dm6]	T	TCCTCGACATTTGG...	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417393	3L_12417393_INS [dm3] 3L_12424293_INS [dm6]	CA	TCTAAACCTAAT...	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417400	3L_12417400_SNP [dm3] 3L_12424300_SNP [dm6]	A	T	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417402	3L_12417402_SNP [dm3] 3L_12424302_SNP [dm6]	G	A	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417403	3L_12417403_SNP [dm3] 3L_12424303_SNP [dm6]	G	T	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417405	3L_12417405_SNP [dm3] 3L_12424305_SNP [dm6]	G	T	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417413	3L_12417413_SNP [dm3] 3L_12424313_SNP [dm6]	G	A	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417431	3L_12417431_SNP [dm3] 3L_12424331_SNP [dm6]	C	T	1.634e^-11	4.438e^-8	INTRON toe
3L	12417454	3L_12417454_SNP [dm3] 3L_12424354_SNP [dm6]	T	A	1.634e^-11	4.438e^-8	INTRON toe
3L	12417455	3L_12417455_SNP [dm3] 3L_12424355_SNP [dm6]	T	A	1.634e^-11	4.438e^-8	INTRON toe
3L	12417460	3L_12417460_SNP [dm3] 3L_12424360_SNP [dm6]	T	C	1.634e^-11	4.438e^-8	INTRON toe
3L	12417464	3L_12417464_SNP [dm3] 3L_12424364_SNP [dm6]	G	A	1.634e^-11	4.438e^-8	INTRON toe
3L	12417472	3L_12417472_SNP [dm3] 3L_12424372_SNP [dm6]	G	C	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad
3L	12417497	3L_12417497_SNP [dm3] 3L_12424397_SNP [dm6]	T	A	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad
3L	12417503	3L_12417503_SNP [dm3] 3L_12424403_SNP [dm6]	G	A	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad
3L	12417517	3L_12417517_SNP [dm3] 3L_12424417_SNP [dm6]	T	C	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad
3L	12417530	3L_12417530_SNP [dm3] 3L_12424430_SNP [dm6]	A	T	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad
3L	12417542	3L_12417542_SNP [dm3] 3L_12424442_SNP [dm6]	A	C	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad
3L	12417556	3L_12417556_SNP [dm3] 3L_12424456_SNP [dm6]	T	C	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad
3L	12417577	3L_12417577_DEL [dm3] 3L_12424477_DEL [dm6]	TTTGTATACCCATTTAGTCG...	T	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad
3L	12417844	3L_12417844_SNP [dm3] 3L_12424744_SNP [dm6]	T	C	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad
3L	12417846	3L_12417846_SNP [dm3] 3L_12424746_SNP [dm6]	C	A	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad
3L	12417879	3L_12417879_SNP [dm3] 3L_12424779_SNP [dm6]	C	A	1.634e^-11	4.438e^-8	INTRON toe	TF binding site mE1_TFBS_cad
3L	12419602	3L_12419602_SNP [dm3] 3L_12426502_SNP [dm6]	A	T	1.634e^-11	4.438e^-8	INTRON toe
3L	12420872	3L_12420872_SNP [dm3] 3L_12427772_SNP [dm6]	G	A	1.634e^-11	4.438e^-8	SYNONYMOUS_CODING toe	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	4499974	2R_4499974_SNP [dm3] 2R_8612469_SNP [dm6]	C	T	1.695e^-11	4.597e^-8	DOWNSTREAM rgr INTRON CG8642
2R	9274650	2R_9274650_SNP [dm3] 2R_13387145_SNP [dm6]	T	G	2.144e^-11	5.805e^-8	INTERGENIC
2L	18721253	2L_18721253_DEL [dm3] 2L_18721253_DEL [dm6]	AGCTGGA	A	2.226e^-11	6.006e^-8	INTRON CG10348
2R	6793571	2R_6793571_SNP [dm3] 2R_10906066_SNP [dm6]	C	T	2.227e^-11	6.006e^-8	DOWNSTREAM CG12943 INTERGENIC
3L	12416897	3L_12416897_SNP [dm3] 3L_12423797_SNP [dm6]	T	A	2.227e^-11	6.006e^-8	NON_SYNONYMOUS_CODING toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12409411	3L_12409411_SNP [dm3] 3L_12416311_SNP [dm6]	C	T	2.318e^-11	6.242e^-8	SYNONYMOUS_CODING ArfGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12409735	3L_12409735_SNP [dm3] 3L_12416635_SNP [dm6]	C	T	2.337e^-11	6.257e^-8	SYNONYMOUS_CODING ArfGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12409954	3L_12409954_SNP [dm3] 3L_12416854_SNP [dm6]	A	G	2.337e^-11	6.257e^-8	SYNONYMOUS_CODING ArfGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1149728	2L_1149728_SNP [dm3] 2L_1149728_SNP [dm6]	C	T	2.337e^-11	6.257e^-8	SYNONYMOUS_CODING Tfb4 DOWNSTREAM CG4749	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8354390	X_8354390_SNP [dm3] X_8460357_SNP [dm6]	A	T	2.337e^-11	6.257e^-8	INTRON CG15347	transposable element FlyBase
3L	12409096	3L_12409096_SNP [dm3] 3L_12415996_SNP [dm6]	C	T	2.359e^-11	6.297e^-8	SYNONYMOUS_CODING ArfGAP1 INTRON ArfGAP1	TF binding site mE1_TFBS_chinmo
3L	12417449	3L_12417449_SNP [dm3] 3L_12424349_SNP [dm6]	G	T	2.359e^-11	6.297e^-8	INTRON toe
3L	12417312	3L_12417312_SNP [dm3] 3L_12424212_SNP [dm6]	A	C	2.534e^-11	6.755e^-8	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1149860	2L_1149860_SNP [dm3] 2L_1149860_SNP [dm6]	C	T	2.566e^-11	6.829e^-8	SYNONYMOUS_CODING Tfb4 UPSTREAM Vps29 DOWNSTREAM CG4749	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	2533275	3L_2533275_SNP [dm3] 3L_2533275_SNP [dm6]	C	T	2.615e^-11	6.950e^-8	INTRON Spn
2R	18055527	2R_18055527_SNP [dm3] 2R_22168022_SNP [dm6]	C	T	2.772e^-11	7.356e^-8	INTRON a	TF binding site mE1_TFBS_chinmo
3L	10453351	3L_10453351_SNP [dm3] 3L_10460251_SNP [dm6]	C	G	2.864e^-11	7.591e^-8	SYNONYMOUS_CODING Gem3	TF binding site mE1_TFBS_sens
2R	5498662	2R_5498662_SNP [dm3] 2R_9611157_SNP [dm6]	T	C	2.881e^-11	7.625e^-8	UTR_3_PRIME Mmp2 UPSTREAM CG12926 INTRON CR44069	TF binding site BDTNP1_TFBS_twi
2R	17849482	2R_17849482_SNP [dm3] 2R_21961977_SNP [dm6]	G	T	2.954e^-11	7.807e^-8	INTERGENIC
X	2553814	X_2553814_SNP [dm3] X_2659781_SNP [dm6]	A	T	3.081e^-11	8.130e^-8	SYNONYMOUS_CODING sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1177053	2L_1177053_SNP [dm3] 2L_1177053_SNP [dm6]	G	T	3.090e^-11	8.142e^-8	SYNONYMOUS_CODING CG4887 UPSTREAM CG4896	TF binding site mE1_TFBS_sens
2L	911906	2L_911906_SNP [dm3] 2L_911906_SNP [dm6]	C	G	3.152e^-11	8.294e^-8	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	8354397	X_8354397_SNP [dm3] X_8460364_SNP [dm6]	T	G	3.382e^-11	8.875e^-8	INTRON CG15347	transposable element FlyBase
X	8354409	X_8354409_INS [dm3] X_8460376_INS [dm6]	A	AAGGAA	3.382e^-11	8.875e^-8	INTRON CG15347	transposable element FlyBase
3L	12407573	3L_12407573_SNP [dm3] 3L_12414473_SNP [dm6]	C	G	3.625e^-11	9.498e^-8	DOWNSTREAM ArfGAP1 INTRON CG32103	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	1046706	3L_1046706_SNP [dm3] 3L_1046706_SNP [dm6]	G	A	4.177e^-11	1.093e^-7	INTRON bab1
2R	18055620	2R_18055620_SNP [dm3] 2R_22168115_SNP [dm6]	C	G	4.513e^-11	1.179e^-7	INTRON a
3R	11707934	3R_11707934_SNP [dm3] 3R_15882212_SNP [dm6]	G	A	4.731e^-11	1.234e^-7	INTERGENIC
2L	20011895	2L_20011895_SNP [dm3] 2L_20011895_SNP [dm6]	T	C	4.749e^-11	1.238e^-7	INTRON CG43861
2R	20603548	2R_20603548_SNP [dm3] 2R_24716025_SNP [dm6]	T	C	5.037e^-11	1.311e^-7	INTRON Mid1
X	8354423	X_8354423_SNP [dm3] X_8460390_SNP [dm6]	C	A	5.293e^-11	1.375e^-7	INTRON CG15347	transposable element FlyBase
X	8482745	X_8482745_SNP [dm3] X_8588712_SNP [dm6]	A	G	5.359e^-11	1.389e^-7	UPSTREAM CG12081 DOWNSTREAM CG12065 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
X	8482749	X_8482749_SNP [dm3] X_8588716_SNP [dm6]	G	T	5.359e^-11	1.389e^-7	UPSTREAM CG12081 DOWNSTREAM CG12065 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	1155317	2L_1155317_SNP [dm3] 2L_1155317_SNP [dm6]	T	C	5.501e^-11	1.423e^-7	INTRON capt
3R	7151654	3R_7151654_DEL [dm3] 3R_11325932_DEL [dm6]	GG	G	5.540e^-11	1.431e^-7	INTERGENIC
3R	8716154	3R_8716154_SNP [dm3] 3R_12890432_SNP [dm6]	C	T	5.953e^-11	1.536e^-7	INTERGENIC
2L	6752516	2L_6752516_SNP [dm3] 2L_6752516_SNP [dm6]	A	G	6.041e^-11	1.557e^-7	INTRON CG11221
3L	3760527	3L_3760527_SNP [dm3] 3L_3760527_SNP [dm6]	A	G	6.086e^-11	1.564e^-7	INTRON CG32264
3L	5321202	3L_5321202_SNP [dm3] 3L_5328102_SNP [dm6]	T	A	6.086e^-11	1.564e^-7	INTERGENIC
3R	1121849	3R_1121849_SNP [dm3] 3R_5296127_SNP [dm6]	T	A	6.293e^-11	1.608e^-7	INTRON mtd
3R	1155506	3R_1155506_SNP [dm3] 3R_5329784_SNP [dm6]	T	A	6.293e^-11	1.608e^-7	INTRON mtd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	1174186	3R_1174186_SNP [dm3] 3R_5348464_SNP [dm6]	G	C	6.293e^-11	1.608e^-7	INTRON mtd
3R	1184454	3R_1184454_SNP [dm3] 3R_5358732_SNP [dm6]	G	T	6.293e^-11	1.608e^-7	UPSTREAM Prosbeta7 DOWNSTREAM Cerk INTERGENIC	TF binding site mE1_TFBS_cnc
3L	20647358	3L_20647358_INS [dm3] 3L_20654258_INS [dm6]	G	GTT	6.821e^-11	1.741e^-7	DOWNSTREAM CR44685 INTERGENIC
3R	1285579	3R_1285579_SNP [dm3] 3R_5459857_SNP [dm6]	G	T	6.851e^-11	1.746e^-7	SYNONYMOUS_CODING PEK
X	8482711	X_8482711_SNP [dm3] X_8588678_SNP [dm6]	C	T	7.607e^-11	1.936e^-7	UPSTREAM CG12081 DOWNSTREAM CG12065 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	11053488	3L_11053488_SNP [dm3] 3L_11060388_SNP [dm6]	T	A	8.128e^-11	2.066e^-7	DOWNSTREAM CG7888 INTRON CG6321
2R	19122347	2R_19122347_SNP [dm3] 2R_23234824_SNP [dm6]	G	C	8.153e^-11	2.069e^-7	DOWNSTREAM CG3092 INTERGENIC
X	6114438	X_6114438_SNP [dm3] X_6220405_SNP [dm6]	T	C	8.355e^-11	2.118e^-7	UTR_5_PRIME Efr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	4834879	X_4834879_SNP [dm3] X_4940846_SNP [dm6]	A	G	8.406e^-11	2.128e^-7	NON_SYNONYMOUS_CODING Ptp4E SPLICE_SITE_REGION Ptp4E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Trl mE1_TFBS_zfh1
3L	12417359	3L_12417359_SNP [dm3] 3L_12424259_SNP [dm6]	T	C	8.723e^-11	2.205e^-7	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	20058814	3L_20058814_SNP [dm3] 3L_20065714_SNP [dm6]	A	G	8.835e^-11	2.230e^-7	INTRON sNPF-R
X	13526504	X_13526504_SNP [dm3] X_13632471_SNP [dm6]	T	C	9.154e^-11	2.308e^-7	INTRON NFAT	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	8796529	3L_8796529_SNP [dm3] 3L_8803429_SNP [dm6]	C	T	9.216e^-11	2.320e^-7	SYNONYMOUS_CODING CG34426 DOWNSTREAM CG32023
2R	19122244	2R_19122244_SNP [dm3] 2R_23234721_SNP [dm6]	T	C	9.248e^-11	2.325e^-7	DOWNSTREAM CG3092 INTERGENIC
3L	12422482	3L_12422482_SNP [dm3] 3L_12429382_SNP [dm6]	C	T	9.283e^-11	2.331e^-7	INTRON toe
2R	12530921	2R_12530921_SNP [dm3] 2R_16643416_SNP [dm6]	T	A	9.507e^-11	2.384e^-7	INTRON gprs	TF binding site BDTNP1_TFBS_da
3L	12097295	3L_12097295_SNP [dm3] 3L_12104195_SNP [dm6]	C	T	9.609e^-11	2.406e^-7	INTERGENIC
3R	9648075	3R_9648075_SNP [dm3] 3R_13822353_SNP [dm6]	T	A	9.695e^-11	2.415e^-7	INTERGENIC
3R	9648079	3R_9648079_SNP [dm3] 3R_13822357_SNP [dm6]	T	A	9.695e^-11	2.415e^-7	INTERGENIC
3R	9648091	3R_9648091_DEL [dm3] 3R_13822369_DEL [dm6]	CG	C	9.695e^-11	2.415e^-7	INTERGENIC
X	20564828	X_20564828_SNP [dm3] X_20693801_SNP [dm6]	G	C	9.695e^-11	2.415e^-7	UPSTREAM run INTRON run	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	8577684	3L_8577684_SNP [dm3] 3L_8584584_SNP [dm6]	T	G	1.024e^-10	2.548e^-7	UPSTREAM CG43078 INTRON CG43078
3L	8802372	3L_8802372_SNP [dm3] 3L_8809272_SNP [dm6]	A	T	1.027e^-10	2.551e^-7	NON_SYNONYMOUS_CODING CG13308 DOWNSTREAM CG32024
3R	1239654	3R_1239654_SNP [dm3] 3R_5413932_SNP [dm6]	G	C	1.048e^-10	2.599e^-7	UPSTREAM CG14669 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19318386	X_19318386_SNP [dm3] X_19424353_SNP [dm6]	A	G	1.065e^-10	2.639e^-7	INTRON kek5
3R	1322527	3R_1322527_SNP [dm3] 3R_5496805_SNP [dm6]	C	T	1.130e^-10	2.796e^-7	INTRON CG31547
2L	10776422	2L_10776422_SNP [dm3] 2L_10776422_SNP [dm6]	A	T	1.141e^-10	2.816e^-7	INTRON CG31869
2R	3793075	2R_3793075_SNP [dm3] 2R_7905570_SNP [dm6]	A	G	1.141e^-10	2.816e^-7	NON_SYNONYMOUS_CODING CG30377	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2813706	3L_2813706_SNP [dm3] 3L_2813706_SNP [dm6]	A	G	1.146e^-10	2.823e^-7	INTRON CG43444
X	6114387	X_6114387_SNP [dm3] X_6220354_SNP [dm6]	C	T	1.155e^-10	2.843e^-7	START_GAINED Efr UTR_5_PRIME Efr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6614099	X_6614099_SNP [dm3] X_6720066_SNP [dm6]	T	A	1.160e^-10	2.848e^-7	UTR_3_PRIME CG3168 DOWNSTREAM CG14441 & 1 other
2R	19125821	2R_19125821_SNP [dm3] 2R_23238298_SNP [dm6]	G	C	1.160e^-10	2.848e^-7	INTERGENIC
3L	12417443	3L_12417443_SNP [dm3] 3L_12424343_SNP [dm6]	T	G	1.283e^-10	3.137e^-7	INTRON toe
3L	12417446	3L_12417446_SNP [dm3] 3L_12424346_SNP [dm6]	A	C	1.283e^-10	3.137e^-7	INTRON toe
3L	12417452	3L_12417452_SNP [dm3] 3L_12424352_SNP [dm6]	C	T	1.283e^-10	3.137e^-7	INTRON toe
3L	15346407	3L_15346407_SNP [dm3] 3L_15353307_SNP [dm6]	G	C	1.305e^-10	3.186e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17491255	2R_17491255_DEL [dm3] 2R_21603750_DEL [dm6]	AA	A	1.349e^-10	3.285e^-7	DOWNSTREAM CR45150 INTERGENIC
3L	11053682	3L_11053682_SNP [dm3] 3L_11060582_SNP [dm6]	C	G	1.349e^-10	3.285e^-7	NON_SYNONYMOUS_CODING CG6321 UPSTREAM Blos2 DOWNSTREAM CG7888
3L	3821454	3L_3821454_SNP [dm3] 3L_3821454_SNP [dm6]	A	T	1.355e^-10	3.287e^-7	INTRON enc
3L	2827426	3L_2827426_SNP [dm3] 3L_2827426_SNP [dm6]	C	T	1.357e^-10	3.287e^-7	INTRON CG43444
3R	10144138	3R_10144138_SNP [dm3] 3R_14318416_SNP [dm6]	C	T	1.357e^-10	3.287e^-7	SYNONYMOUS_CODING pr-set7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12096934	3L_12096934_SNP [dm3] 3L_12103834_SNP [dm6]	T	C	1.357e^-10	3.287e^-7	INTERGENIC
2L	1175109	2L_1175109_SNP [dm3] 2L_1175109_SNP [dm6]	C	T	1.360e^-10	3.291e^-7	SYNONYMOUS_CODING CG4887	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	72812	2R_72812_SNP [dm3] 2R_4185307_SNP [dm6]	T	G	1.395e^-10	3.371e^-7	INTERGENIC
3R	43780	3R_43780_DEL [dm3] 3R_4218058_DEL [dm6]	CGT	C	1.424e^-10	3.436e^-7	DOWNSTREAM CG31516 INTRON aux
3L	12099460	3L_12099460_SNP [dm3] 3L_12106360_SNP [dm6]	C	T	1.497e^-10	3.595e^-7	INTERGENIC
3L	12099508	3L_12099508_SNP [dm3] 3L_12106408_SNP [dm6]	G	A	1.497e^-10	3.595e^-7	INTERGENIC
3L	12099524	3L_12099524_SNP [dm3] 3L_12106424_SNP [dm6]	T	A	1.497e^-10	3.595e^-7	INTERGENIC
3L	8792198	3L_8792198_SNP [dm3] 3L_8799098_SNP [dm6]	G	T	1.501e^-10	3.595e^-7	SYNONYMOUS_CODING CG13310 DOWNSTREAM Fhos
3L	8792462	3L_8792462_SNP [dm3] 3L_8799362_SNP [dm6]	T	C	1.501e^-10	3.595e^-7	SYNONYMOUS_CODING CG13310 DOWNSTREAM Fhos
3L	8792504	3L_8792504_SNP [dm3] 3L_8799404_SNP [dm6]	A	C	1.501e^-10	3.595e^-7	SYNONYMOUS_CODING CG13310 DOWNSTREAM Fhos
3L	16164647	3L_16164647_SNP [dm3] 3L_16171547_SNP [dm6]	A	T	1.531e^-10	3.629e^-7	UPSTREAM CG33795 INTERGENIC
2L	10776381	2L_10776381_SNP [dm3] 2L_10776381_SNP [dm6]	A	G	1.532e^-10	3.629e^-7	INTRON CG31869
2L	10776383	2L_10776383_SNP [dm3] 2L_10776383_SNP [dm6]	T	A	1.532e^-10	3.629e^-7	INTRON CG31869
2L	10776388	2L_10776388_SNP [dm3] 2L_10776388_SNP [dm6]	T	G	1.532e^-10	3.629e^-7	INTRON CG31869
2L	10776391	2L_10776391_SNP [dm3] 2L_10776391_SNP [dm6]	T	A	1.532e^-10	3.629e^-7	INTRON CG31869
2L	10776394	2L_10776394_SNP [dm3] 2L_10776394_SNP [dm6]	C	T	1.532e^-10	3.629e^-7	INTRON CG31869
2L	10776397	2L_10776397_INS [dm3] 2L_10776397_INS [dm6]	A	AT	1.532e^-10	3.629e^-7	INTRON CG31869
2R	20315997	2R_20315997_SNP [dm3] 2R_24428474_SNP [dm6]	G	A	1.543e^-10	3.629e^-7	UPSTREAM prom INTERGENIC
2R	20318151	2R_20318151_SNP [dm3] 2R_24430628_SNP [dm6]	T	C	1.543e^-10	3.629e^-7	START_GAINED CG15873 UTR_5_PRIME CG15873 DOWNSTREAM Pgam5-2	TF binding site mE1_TFBS_cad
2R	20599364	2R_20599364_SNP [dm3] 2R_24711841_SNP [dm6]	A	G	1.543e^-10	3.629e^-7	INTRON Mid1
2R	20599606	2R_20599606_SNP [dm3] 2R_24712083_SNP [dm6]	A	G	1.543e^-10	3.629e^-7	INTRON Mid1
2R	20599702	2R_20599702_SNP [dm3] 2R_24712179_SNP [dm6]	C	T	1.543e^-10	3.629e^-7	INTRON Mid1	TF binding site mE1_TFBS_Trl
2R	20600189	2R_20600189_SNP [dm3] 2R_24712666_SNP [dm6]	T	C	1.543e^-10	3.629e^-7	INTRON Mid1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	1263564	3R_1263564_SNP [dm3] 3R_5437842_SNP [dm6]	G	A	1.543e^-10	3.629e^-7	INTRON CG14669
X	17318561	X_17318561_SNP [dm3] X_17424528_SNP [dm6]	G	T	1.552e^-10	3.637e^-7	INTRON CG12994 & 1 other
X	17318563	X_17318563_SNP [dm3] X_17424530_SNP [dm6]	G	T	1.552e^-10	3.637e^-7	INTRON CG12994 & 1 other
X	17318593	X_17318593_SNP [dm3] X_17424560_SNP [dm6]	G	A	1.552e^-10	3.637e^-7	INTRON CG12994 & 1 other
2L	2089883	2L_2089883_SNP [dm3] 2L_2089883_SNP [dm6]	G	A	1.568e^-10	3.669e^-7	INTRON dpr3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3641991	2L_3641991_SNP [dm3] 2L_3641991_SNP [dm6]	A	T	1.598e^-10	3.736e^-7	INTRON for	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	301258	3R_301258_SNP [dm3] 3R_4475536_SNP [dm6]	C	T	1.606e^-10	3.750e^-7	UPSTREAM CG31523 INTRON CG31523	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10776337	2L_10776337_SNP [dm3] 2L_10776337_SNP [dm6]	G	T	1.614e^-10	3.757e^-7	INTRON CG31869
2R	2060083	2R_2060083_SNP [dm3] 2R_6172578_SNP [dm6]	G	A	1.620e^-10	3.757e^-7	DOWNSTREAM tRNA:CR30316 INTERGENIC	regulatory region REDfly_CRMs
2R	682136	2R_682136_SNP [dm3] 2R_4794631_SNP [dm6]	G	A	1.620e^-10	3.757e^-7	INTERGENIC
2R	684455	2R_684455_SNP [dm3] 2R_4796950_SNP [dm6]	G	T	1.620e^-10	3.757e^-7	INTERGENIC	transposable element FlyBase
X	12529585	X_12529585_SNP [dm3] X_12635552_SNP [dm6]	G	T	1.620e^-10	3.757e^-7	UPSTREAM mir-970 INTRON Tomosyn	TF binding site mE1_TFBS_HSA
3R	991663	3R_991663_SNP [dm3] 3R_5165941_SNP [dm6]	C	T	1.630e^-10	3.778e^-7	SYNONYMOUS_CODING dpr16 INTRON dpr16	TF binding site mE1_TFBS_chinmo
3L	22433627	3L_22433627_SNP [dm3] 3L_22440527_SNP [dm6]	G	C	1.673e^-10	3.871e^-7	INTERGENIC
3L	8793648	3L_8793648_SNP [dm3] 3L_8800548_SNP [dm6]	G	T	1.713e^-10	3.958e^-7	UPSTREAM CG13310 DOWNSTREAM CG13311 INTERGENIC
2L	2182444	2L_2182444_SNP [dm3] 2L_2182444_SNP [dm6]	T	C	1.719e^-10	3.958e^-7	EXON CR43751	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2309029	2L_2309029_SNP [dm3] 2L_2309029_SNP [dm6]	A	C	1.719e^-10	3.958e^-7	NON_SYNONYMOUS_CODING CG9967 DOWNSTREAM CG16995	TF binding site mE1_TFBS_chinmo
2L	5253356	2L_5253356_SNP [dm3] 2L_5253356_SNP [dm6]	T	A	1.719e^-10	3.958e^-7	INTRON tkv	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12118002	2R_12118002_SNP [dm3] 2R_16230497_SNP [dm6]	C	G	1.727e^-10	3.971e^-7	UTR_5_PRIME CG15706 UPSTREAM CG15706 DOWNSTREAM Tsf3 INTRON CG15701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
X	17318595	X_17318595_SNP [dm3] X_17424562_SNP [dm6]	C	T	1.745e^-10	4.008e^-7	INTRON CG12994 & 1 other
3L	13325222	3L_13325222_SNP [dm3] 3L_13332122_SNP [dm6]	G	C	1.771e^-10	4.063e^-7	INTERGENIC
2L	2049025	2L_2049025_SNP [dm3] 2L_2049025_SNP [dm6]	T	A	1.800e^-10	4.123e^-7	DOWNSTREAM Kebab INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	13149255	2R_13149255_SNP [dm3] 2R_17261750_SNP [dm6]	C	T	1.893e^-10	4.318e^-7	UPSTREAM mbl INTRON mbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	12103794	3L_12103794_SNP [dm3] 3L_12110694_SNP [dm6]	T	C	1.896e^-10	4.318e^-7	INTERGENIC
2R	4499867	2R_4499867_SNP [dm3] 2R_8612362_SNP [dm6]	T	A	1.903e^-10	4.318e^-7	DOWNSTREAM rgr INTRON CG8642
3L	8796120	3L_8796120_SNP [dm3] 3L_8803020_SNP [dm6]	C	T	1.903e^-10	4.318e^-7	NON_SYNONYMOUS_CODING CG34426 UPSTREAM CG13311 DOWNSTREAM CG32023	TF binding site mE1_TFBS_sens
3L	8796141	3L_8796141_SNP [dm3] 3L_8803041_SNP [dm6]	C	T	1.903e^-10	4.318e^-7	NON_SYNONYMOUS_CODING CG34426 UPSTREAM CG13311 DOWNSTREAM CG32023
3L	8796170	3L_8796170_SNP [dm3] 3L_8803070_SNP [dm6]	A	T	1.903e^-10	4.318e^-7	SYNONYMOUS_CODING CG34426 UPSTREAM CG13311 DOWNSTREAM CG32023
3L	8796193	3L_8796193_SNP [dm3] 3L_8803093_SNP [dm6]	C	T	1.903e^-10	4.318e^-7	NON_SYNONYMOUS_CODING CG34426 UPSTREAM CG13311 DOWNSTREAM CG32023
3L	8796200	3L_8796200_SNP [dm3] 3L_8803100_SNP [dm6]	G	T	1.903e^-10	4.318e^-7	SYNONYMOUS_CODING CG34426 UPSTREAM CG13311 DOWNSTREAM CG32023
3L	12096878	3L_12096878_SNP [dm3] 3L_12103778_SNP [dm6]	C	G	1.931e^-10	4.376e^-7	INTERGENIC
3R	4707339	3R_4707339_SNP [dm3] 3R_8881617_SNP [dm6]	A	G	1.969e^-10	4.454e^-7	INTRON pyd
3L	12106205	3L_12106205_SNP [dm3] 3L_12113105_SNP [dm6]	A	T	1.983e^-10	4.454e^-7	INTERGENIC
3L	12106206	3L_12106206_SNP [dm3] 3L_12113106_SNP [dm6]	A	G	1.983e^-10	4.454e^-7	INTERGENIC
3L	12106208	3L_12106208_INS [dm3] 3L_12113108_INS [dm6]	G	GGTAGGGTATAGTATAGTAG...	1.983e^-10	4.454e^-7	INTERGENIC
3L	12106213	3L_12106213_SNP [dm3] 3L_12113113_SNP [dm6]	G	A	1.983e^-10	4.454e^-7	INTERGENIC
3L	12106230	3L_12106230_SNP [dm3] 3L_12113130_SNP [dm6]	A	C	1.983e^-10	4.454e^-7	INTERGENIC
3L	12106329	3L_12106329_SNP [dm3] 3L_12113229_SNP [dm6]	G	A	1.983e^-10	4.454e^-7	INTERGENIC
X	16757822	X_16757822_SNP [dm3] X_16863789_SNP [dm6]	C	T	1.985e^-10	4.454e^-7	INTRON CG13003
2R	13043853	2R_13043853_INS [dm3] 2R_17156348_INS [dm6]	G	GGACTCAGACCTCAG...	2.140e^-10	4.772e^-7	UTR_3_PRIME CG17290 DOWNSTREAM CG17287
3R	1264485	3R_1264485_SNP [dm3] 3R_5438763_SNP [dm6]	G	C	2.145e^-10	4.772e^-7	INTRON CG14669	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3R	1067910	3R_1067910_SNP [dm3] 3R_5242188_SNP [dm6]	C	A	2.147e^-10	4.772e^-7	DOWNSTREAM CG12163 INTRON CG12163
3R	1219724	3R_1219724_SNP [dm3] 3R_5394002_SNP [dm6]	C	T	2.147e^-10	4.772e^-7	UTR_5_PRIME CG1172	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
3R	1228426	3R_1228426_SNP [dm3] 3R_5402704_SNP [dm6]	A	T	2.147e^-10	4.772e^-7	INTRON CG2663
3R	1230266	3R_1230266_SNP [dm3] 3R_5404544_SNP [dm6]	T	A	2.147e^-10	4.772e^-7	UPSTREAM CG2663 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1230267	3R_1230267_SNP [dm3] 3R_5404545_SNP [dm6]	A	T	2.147e^-10	4.772e^-7	UPSTREAM CG2663 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1233776	3R_1233776_SNP [dm3] 3R_5408054_SNP [dm6]	T	A	2.147e^-10	4.772e^-7	INTRON Orco
3R	1350990	3R_1350990_SNP [dm3] 3R_5525268_SNP [dm6]	G	C	2.157e^-10	4.790e^-7	INTRON Itp-r83A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10776319	2L_10776319_SNP [dm3] 2L_10776319_SNP [dm6]	G	T	2.167e^-10	4.806e^-7	INTRON CG31869
2R	664609	2R_664609_INS [dm3] 2R_4777104_INS [dm6]	T	TAAATTT	2.174e^-10	4.815e^-7	INTERGENIC	transposable element FlyBase
2R	7892489	2R_7892489_SNP [dm3] 2R_12004984_SNP [dm6]	G	T	2.198e^-10	4.863e^-7	INTRON otk
3R	2354379	3R_2354379_SNP [dm3] 3R_6528657_SNP [dm6]	A	T	2.219e^-10	4.903e^-7	UTR_3_PRIME CG15185 DOWNSTREAM dpr11
2R	2060198	2R_2060198_SNP [dm3] 2R_6172693_SNP [dm6]	G	A	2.287e^-10	5.048e^-7	UPSTREAM Cyp6w1 DOWNSTREAM tRNA:CR30316 INTERGENIC	regulatory region REDfly_CRMs
3R	8481724	3R_8481724_SNP [dm3] 3R_12656002_SNP [dm6]	G	A	2.326e^-10	5.122e^-7	INTRON CG6225
3R	8481733	3R_8481733_SNP [dm3] 3R_12656011_SNP [dm6]	C	T	2.326e^-10	5.122e^-7	INTRON CG6225
2R	713813	2R_713813_SNP [dm3] 2R_4826308_SNP [dm6]	A	G	2.383e^-10	5.234e^-7	INTERGENIC	transposable element FlyBase
2R	780404	2R_780404_INS [dm3] 2R_4892899_INS [dm6]	T	CAATA	2.383e^-10	5.234e^-7	INTERGENIC	transposable element FlyBase
3L	5979181	3L_5979181_SNP [dm3] 3L_5986081_SNP [dm6]	A	T	2.542e^-10	5.577e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1206701	3R_1206701_SNP [dm3] 3R_5380979_SNP [dm6]	T	G	2.599e^-10	5.696e^-7	INTRON kkv
2L	10144113	2L_10144113_SNP [dm3] 2L_10144113_SNP [dm6]	T	G	2.717e^-10	5.946e^-7	UPSTREAM CG4839 INTRON CG44153
3L	14645584	3L_14645584_SNP [dm3] 3L_14652484_SNP [dm6]	G	C	2.735e^-10	5.971e^-7	INTRON dlp
3L	7067614	3L_7067614_SNP [dm3] 3L_7074514_SNP [dm6]	A	T	2.735e^-10	5.971e^-7	INTRON CG8641 & 1 other
3L	12106313	3L_12106313_SNP [dm3] 3L_12113213_SNP [dm6]	T	G	2.771e^-10	6.045e^-7	INTERGENIC
2L	2225542	2L_2225542_SNP [dm3] 2L_2225542_SNP [dm6]	C	T	2.812e^-10	6.118e^-7	UTR_3_PRIME papi UPSTREAM rti DOWNSTREAM CG15387
2L	3425826	2L_3425826_SNP [dm3] 2L_3425826_SNP [dm6]	C	T	2.812e^-10	6.118e^-7	INTRON pgant2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	10776414	2L_10776414_SNP [dm3] 2L_10776414_SNP [dm6]	T	G	2.885e^-10	6.271e^-7	INTRON CG31869
3R	1264680	3R_1264680_SNP [dm3] 3R_5438958_SNP [dm6]	T	A	2.980e^-10	6.469e^-7	INTRON CG14669	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3R	1216674	3R_1216674_SNP [dm3] 3R_5390952_SNP [dm6]	A	C	3.008e^-10	6.515e^-7	INTRON kkv	regulatory region REDfly_CRMs
X	9455878	X_9455878_SNP [dm3] X_9561845_SNP [dm6]	C	G	3.008e^-10	6.515e^-7	NON_SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_chinmo
2R	8507032	2R_8507032_SNP [dm3] 2R_12619527_SNP [dm6]	A	G	3.077e^-10	6.657e^-7	UTR_3_PRIME CG45086 & 1 other DOWNSTREAM Galphaq	TF binding site mE1_TFBS_zfh1
2R	916069	2R_916069_SNP [dm3] 2R_5028564_SNP [dm6]	T	C	3.116e^-10	6.733e^-7	INTERGENIC
2R	758846	2R_758846_SNP [dm3] 2R_4871341_SNP [dm6]	C	A	3.179e^-10	6.862e^-7	INTERGENIC
2R	15548907	2R_15548907_SNP [dm3] 2R_19661402_SNP [dm6]	C	A	3.237e^-10	6.979e^-7	UPSTREAM mir-6-3 & 4 others DOWNSTREAM mir-286 & 2 others EXON CR44504	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	240391	3R_240391_SNP [dm3] 3R_4414669_SNP [dm6]	G	T	3.283e^-10	7.070e^-7	SYNONYMOUS_CODING CG32944
3L	14579045	3L_14579045_SNP [dm3] 3L_14585945_SNP [dm6]	G	A	3.290e^-10	7.076e^-7	INTRON HGTX	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	787985	2R_787985_SNP [dm3] 2R_4900480_SNP [dm6]	G	A	3.370e^-10	7.239e^-7	INTRON CG44102	transposable element FlyBase
2L	20011918	2L_20011918_SNP [dm3] 2L_20011918_SNP [dm6]	C	A	3.398e^-10	7.292e^-7	INTRON CG43861
3R	289658	3R_289658_SNP [dm3] 3R_4463936_SNP [dm6]	G	A	3.560e^-10	7.622e^-7	INTERGENIC
3R	290782	3R_290782_SNP [dm3] 3R_4465060_SNP [dm6]	A	T	3.560e^-10	7.622e^-7	DOWNSTREAM CG31523 INTERGENIC
2R	8410470	2R_8410470_DEL [dm3] 2R_12522965_DEL [dm6]	AAGCAATAA	A	3.694e^-10	7.863e^-7	DOWNSTREAM CG33632 INTERGENIC	transposable element FlyBase
2R	9136386	2R_9136386_SNP [dm3] 2R_13248881_SNP [dm6]	C	T	3.701e^-10	7.863e^-7	DOWNSTREAM CG4712 & 1 other INTERGENIC
3R	9648071	3R_9648071_SNP [dm3] 3R_13822349_SNP [dm6]	T	A	3.704e^-10	7.863e^-7	INTERGENIC
2R	903481	2R_903481_SNP [dm3] 2R_5015976_SNP [dm6]	G	T	3.706e^-10	7.863e^-7	INTRON Ir41a	transposable element FlyBase
2R	903483	2R_903483_SNP [dm3] 2R_5015978_SNP [dm6]	C	T	3.706e^-10	7.863e^-7	INTRON Ir41a	transposable element FlyBase
2R	903485	2R_903485_INS [dm3] 2R_5015980_INS [dm6]	A	TTCC	3.706e^-10	7.863e^-7	INTRON Ir41a	transposable element FlyBase
2R	903489	2R_903489_SNP [dm3] 2R_5015984_SNP [dm6]	A	T	3.706e^-10	7.863e^-7	INTRON Ir41a	transposable element FlyBase
3L	13527299	3L_13527299_SNP [dm3] 3L_13534199_SNP [dm6]	T	C	3.706e^-10	7.863e^-7	UTR_3_PRIME bru-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8800753	2L_8800753_SNP [dm3] 2L_8800753_SNP [dm6]	G	T	3.719e^-10	7.881e^-7	INTERGENIC
3L	1064265	3L_1064265_SNP [dm3] 3L_1064265_SNP [dm6]	C	A	3.726e^-10	7.887e^-7	INTRON bab1	TF binding site BDTNP1_TFBS_dl
2R	16639725	2R_16639725_SNP [dm3] 2R_20752220_SNP [dm6]	C	G	3.777e^-10	7.986e^-7	UPSTREAM CG34202 DOWNSTREAM CG34201 INTERGENIC
2L	12923178	2L_12923178_SNP [dm3] 2L_12923178_SNP [dm6]	G	A	3.822e^-10	8.070e^-7	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
3R	9002721	3R_9002721_DEL [dm3] 3R_13176999_DEL [dm6]	ATAA	A	3.881e^-10	8.186e^-7	INTERGENIC
X	666872	X_666872_INS [dm3] X_772839_INS [dm6]	G	GTACTGCAG	3.911e^-10	8.240e^-7	INTRON fz3	TF binding site mE1_TFBS_sens
2R	6533935	2R_6533935_SNP [dm3] 2R_10646430_SNP [dm6]	G	A	3.995e^-10	8.381e^-7	SYNONYMOUS_CODING Elp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
3R	116902	3R_116902_SNP [dm3] 3R_4291180_SNP [dm6]	C	T	4.000e^-10	8.381e^-7	UPSTREAM cpx INTRON cpx
3R	222975	3R_222975_SNP [dm3] 3R_4397253_SNP [dm6]	G	A	4.000e^-10	8.381e^-7	SYNONYMOUS_CODING CG9855	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	264221	3R_264221_SNP [dm3] 3R_4438499_SNP [dm6]	C	A	4.000e^-10	8.381e^-7	NON_SYNONYMOUS_CODING CG14650	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	376768	3R_376768_SNP [dm3] 3R_4551046_SNP [dm6]	G	T	4.000e^-10	8.381e^-7	INTRON CG34357
3L	1424694	3L_1424694_DEL [dm3] 3L_1424694_DEL [dm6]	TATTTTGC	T	4.026e^-10	8.423e^-7	INTRON Ptp61F
X	11944749	X_11944749_SNP [dm3] X_12050716_SNP [dm6]	G	A	4.029e^-10	8.423e^-7	INTRON CR43960 & 1 other
2L	2041441	2L_2041441_SNP [dm3] 2L_2041441_SNP [dm6]	C	G	4.062e^-10	8.481e^-7	SYNONYMOUS_CODING Su_dx_	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1842712	3L_1842712_SNP [dm3] 3L_1842712_SNP [dm6]	G	A	4.154e^-10	8.665e^-7	UPSTREAM Cpr62Bc INTERGENIC
3R	1264677	3R_1264677_SNP [dm3] 3R_5438955_SNP [dm6]	A	G	4.176e^-10	8.700e^-7	INTRON CG14669	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3L	16157601	3L_16157601_SNP [dm3] 3L_16164501_SNP [dm6]	A	G	4.301e^-10	8.950e^-7	UTR_5_PRIME CG5151	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	10378510	3L_10378510_SNP [dm3] 3L_10385410_SNP [dm6]	A	T	4.390e^-10	9.116e^-7	INTERGENIC
3L	10378537	3L_10378537_SNP [dm3] 3L_10385437_SNP [dm6]	T	A	4.390e^-10	9.116e^-7	INTERGENIC
2R	12582808	2R_12582808_DEL [dm3] 2R_16695303_DEL [dm6]	TT	T	4.442e^-10	9.213e^-7	INTRON CG30463
2L	16807948	2L_16807948_SNP [dm3] 2L_16807948_SNP [dm6]	G	A	4.491e^-10	9.305e^-7	INTRON CG13280 & 1 other
2R	766229	2R_766229_SNP [dm3] 2R_4878724_SNP [dm6]	G	C	4.500e^-10	9.312e^-7	INTERGENIC
3R	1120202	3R_1120202_SNP [dm3] 3R_5294480_SNP [dm6]	C	A	4.613e^-10	9.525e^-7	SYNONYMOUS_CODING mtd	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1202288	3R_1202288_SNP [dm3] 3R_5376566_SNP [dm6]	A	C	4.613e^-10	9.525e^-7	UPSTREAM 7B2 DOWNSTREAM CG14667 INTERGENIC
3R	406594	3R_406594_DEL [dm3] 3R_4580872_DEL [dm6]	TTTACT	T	4.623e^-10	9.536e^-7	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb transposable element FlyBase
2L	14283695	2L_14283695_SNP [dm3] 2L_14283695_SNP [dm6]	G	C	4.820e^-10	9.931e^-7	INTRON wb
2L	1626012	2L_1626012_DEL [dm3] 2L_1626012_DEL [dm6]	ATTCTCCGCC	G	4.858e^-10	9.997e^-7	EXON CR44603
2L	18719727	2L_18719727_SNP [dm3] 2L_18719727_SNP [dm6]	T	A	5.176e^-10	1.058e^-6	INTRON CG10348	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11252885	2R_11252885_SNP [dm3] 2R_15365380_SNP [dm6]	C	T	5.192e^-10	1.058e^-6	INTRON unc-5
3R	1219571	3R_1219571_DEL [dm3] 3R_5393849_DEL [dm6]	GG	G	5.199e^-10	1.058e^-6	UPSTREAM kkv & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	1158139	2L_1158139_SNP [dm3] 2L_1158139_SNP [dm6]	A	G	5.259e^-10	1.058e^-6	UTR_5_PRIME capt UPSTREAM Tango14 DOWNSTREAM CR43767	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	1161393	2L_1161393_SNP [dm3] 2L_1161393_SNP [dm6]	A	T	5.259e^-10	1.058e^-6	SYNONYMOUS_CODING CG5080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1161396	2L_1161396_SNP [dm3] 2L_1161396_SNP [dm6]	C	T	5.259e^-10	1.058e^-6	SYNONYMOUS_CODING CG5080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1161679	2L_1161679_SNP [dm3] 2L_1161679_SNP [dm6]	G	A	5.259e^-10	1.058e^-6	NON_SYNONYMOUS_CODING CG5080	TF binding site mE1_TFBS_chinmo
2L	1162862	2L_1162862_INS [dm3] 2L_1162862_INS [dm6]	T	TT	5.259e^-10	1.058e^-6	INTRON CG5080	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1164632	2L_1164632_SNP [dm3] 2L_1164632_SNP [dm6]	G	A	5.259e^-10	1.058e^-6	SYNONYMOUS_CODING IntS14 UPSTREAM CG5080	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1164698	2L_1164698_SNP [dm3] 2L_1164698_SNP [dm6]	C	T	5.259e^-10	1.058e^-6	SYNONYMOUS_CODING IntS14 UPSTREAM CG5080	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1166268	2L_1166268_SNP [dm3] 2L_1166268_SNP [dm6]	C	T	5.259e^-10	1.058e^-6	SYNONYMOUS_CODING IntS14 UPSTREAM CG14341 DOWNSTREAM Plap	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1169895	2L_1169895_SNP [dm3] 2L_1169895_SNP [dm6]	C	T	5.259e^-10	1.058e^-6	START_GAINED Plap UTR_5_PRIME Plap UPSTREAM CG31922 DOWNSTREAM CG5118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1170617	2L_1170617_SNP [dm3] 2L_1170617_SNP [dm6]	C	T	5.259e^-10	1.058e^-6	NON_SYNONYMOUS_CODING CG31922 UPSTREAM Plap DOWNSTREAM CG5118	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	1170655	2L_1170655_SNP [dm3] 2L_1170655_SNP [dm6]	T	G	5.259e^-10	1.058e^-6	NON_SYNONYMOUS_CODING CG31922 UPSTREAM Plap DOWNSTREAM CG5118	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1170959	2L_1170959_SNP [dm3] 2L_1170959_SNP [dm6]	G	A	5.259e^-10	1.058e^-6	UPSTREAM Plap DOWNSTREAM CG31922 INTRON CG5118	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1170974	2L_1170974_SNP [dm3] 2L_1170974_SNP [dm6]	T	A	5.259e^-10	1.058e^-6	UPSTREAM Plap DOWNSTREAM CG31922 INTRON CG5118	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1171121	2L_1171121_SNP [dm3] 2L_1171121_SNP [dm6]	T	C	5.259e^-10	1.058e^-6	SYNONYMOUS_CODING CG5118 UPSTREAM Plap DOWNSTREAM CG31922	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1171124	2L_1171124_SNP [dm3] 2L_1171124_SNP [dm6]	C	A	5.259e^-10	1.058e^-6	NON_SYNONYMOUS_CODING CG5118 UPSTREAM Plap DOWNSTREAM CG31922	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1173639	2L_1173639_SNP [dm3] 2L_1173639_SNP [dm6]	C	A	5.259e^-10	1.058e^-6	SYNONYMOUS_CODING CG4887 UPSTREAM CG5118	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1173998	2L_1173998_SNP [dm3] 2L_1173998_SNP [dm6]	T	A	5.259e^-10	1.058e^-6	NON_SYNONYMOUS_CODING CG4887	TF binding site mE1_TFBS_cad
2L	1174337	2L_1174337_SNP [dm3] 2L_1174337_SNP [dm6]	T	C	5.259e^-10	1.058e^-6	INTRON CG4887	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19024041	2R_19024041_SNP [dm3] 2R_23136518_SNP [dm6]	C	T	5.276e^-10	1.060e^-6	INTERGENIC
2L	2022792	2L_2022792_SNP [dm3] 2L_2022792_SNP [dm6]	C	T	5.439e^-10	1.089e^-6	INTRON CG4238
2L	1161416	2L_1161416_SNP [dm3] 2L_1161416_SNP [dm6]	C	T	5.440e^-10	1.089e^-6	NON_SYNONYMOUS_CODING CG5080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1168602	2L_1168602_SNP [dm3] 2L_1168602_SNP [dm6]	C	T	5.440e^-10	1.089e^-6	SYNONYMOUS_CODING Plap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11981409	2R_11981409_SNP [dm3] 2R_16093904_SNP [dm6]	C	T	5.441e^-10	1.089e^-6	INTRON Dg	TF binding site BDTNP1_TFBS_twi
2R	715529	2R_715529_SNP [dm3] 2R_4828024_SNP [dm6]	G	T	5.474e^-10	1.094e^-6	INTERGENIC	transposable element FlyBase
3R	227020	3R_227020_SNP [dm3] 3R_4401298_SNP [dm6]	G	C	5.481e^-10	1.094e^-6	INTRON CG9853 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	903475	2R_903475_MNP [dm3] 2R_5015970_MNP [dm6]	AAA	TGT	5.565e^-10	1.110e^-6	INTRON Ir41a	transposable element FlyBase
3R	20213	3R_20213_SNP [dm3] 3R_4194491_SNP [dm6]	A	G	5.617e^-10	1.119e^-6	EXON CR33294	TF binding site mE1_TFBS_sens
2R	1357076	2R_1357076_SNP [dm3] 2R_5469571_SNP [dm6]	T	C	5.748e^-10	1.144e^-6	INTRON CG30440	transposable element FlyBase
3R	264207	3R_264207_SNP [dm3] 3R_4438485_SNP [dm6]	A	T	6.028e^-10	1.198e^-6	NON_SYNONYMOUS_CODING CG14650	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	27390	3R_27390_DEL [dm3] 3R_4201668_DEL [dm6]	TTAACT	T	6.129e^-10	1.217e^-6	INTRON CG12582
3L	8605037	3L_8605037_INS [dm3] 3L_8611937_INS [dm6]	T	TTTT	6.234e^-10	1.236e^-6	INTRON CG6282
2R	766632	2R_766632_SNP [dm3] 2R_4879127_SNP [dm6]	G	T	6.368e^-10	1.262e^-6	INTERGENIC
3L	12419454	3L_12419454_INS [dm3] 3L_12426354_INS [dm6]	C	CAAGTCACC	6.701e^-10	1.326e^-6	INTRON toe
2R	780268	2R_780268_SNP [dm3] 2R_4892763_SNP [dm6]	G	A	7.097e^-10	1.403e^-6	INTERGENIC	transposable element FlyBase
2L	11769612	2L_11769612_SNP [dm3] 2L_11769612_SNP [dm6]	A	G	7.209e^-10	1.424e^-6	INTERGENIC
2L	1161065	2L_1161065_SNP [dm3] 2L_1161065_SNP [dm6]	A	G	7.297e^-10	1.438e^-6	SYNONYMOUS_CODING CG5080 DOWNSTREAM Tango14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1164435	2L_1164435_SNP [dm3] 2L_1164435_SNP [dm6]	T	G	7.297e^-10	1.438e^-6	UPSTREAM IntS14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
2L	14259975	2L_14259975_SNP [dm3] 2L_14259975_SNP [dm6]	A	T	7.360e^-10	1.448e^-6	INTERGENIC
2R	3795250	2R_3795250_SNP [dm3] 2R_7907745_SNP [dm6]	A	G	7.363e^-10	1.448e^-6	INTRON CG30377
2L	1160119	2L_1160119_SNP [dm3] 2L_1160119_SNP [dm6]	T	A	7.561e^-10	1.481e^-6	UTR_3_PRIME Tango14 UPSTREAM CR43767 DOWNSTREAM CG5080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1170569	2L_1170569_SNP [dm3] 2L_1170569_SNP [dm6]	C	T	7.561e^-10	1.481e^-6	UPSTREAM Plap DOWNSTREAM CG5118 INTRON CG31922	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1170573	2L_1170573_SNP [dm3] 2L_1170573_SNP [dm6]	T	C	7.561e^-10	1.481e^-6	UPSTREAM Plap DOWNSTREAM CG5118 INTRON CG31922	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1174106	2L_1174106_SNP [dm3] 2L_1174106_SNP [dm6]	T	A	7.561e^-10	1.481e^-6	SYNONYMOUS_CODING CG4887	TF binding site mE1_TFBS_cad
2R	903473	2R_903473_SNP [dm3] 2R_5015968_SNP [dm6]	G	T	7.763e^-10	1.519e^-6	INTRON Ir41a	transposable element FlyBase
2R	16756255	2R_16756255_SNP [dm3] 2R_20868750_SNP [dm6]	G	C	8.210e^-10	1.604e^-6	UTR_3_PRIME IM4 DOWNSTREAM IM4
2L	10746530	2L_10746530_SNP [dm3] 2L_10746530_SNP [dm6]	C	T	8.217e^-10	1.604e^-6	INTRON CG17124
3R	12706066	3R_12706066_SNP [dm3] 3R_16880344_SNP [dm6]	A	T	8.460e^-10	1.648e^-6	INTRON iab-8
3R	12706068	3R_12706068_SNP [dm3] 3R_16880346_SNP [dm6]	T	C	8.460e^-10	1.648e^-6	INTRON iab-8
2L	2072942	2L_2072942_DEL [dm3] 2L_2072942_DEL [dm6]	GA	G	8.731e^-10	1.699e^-6	INTRON dpr3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13045432	2R_13045432_SNP [dm3] 2R_17157927_SNP [dm6]	C	T	8.860e^-10	1.722e^-6	SYNONYMOUS_CODING CG17287 DOWNSTREAM CG17290 & 1 other
3L	12403889	3L_12403889_SNP [dm3] 3L_12410789_SNP [dm6]	T	C	8.874e^-10	1.723e^-6	INTRON CG32103
2R	763961	2R_763961_SNP [dm3] 2R_4876456_SNP [dm6]	C	G	9.009e^-10	1.748e^-6	INTERGENIC	transposable element FlyBase
2R	767198	2R_767198_SNP [dm3] 2R_4879693_SNP [dm6]	T	C	9.310e^-10	1.804e^-6	INTERGENIC
2L	8800773	2L_8800773_SNP [dm3] 2L_8800773_SNP [dm6]	C	T	9.506e^-10	1.840e^-6	INTERGENIC
3L	17384902	3L_17384902_SNP [dm3] 3L_17391802_SNP [dm6]	A	C	9.525e^-10	1.842e^-6	INTERGENIC	TF binding site mE1_TFBS_kn
2L	1164036	2L_1164036_SNP [dm3] 2L_1164036_SNP [dm6]	G	A	9.758e^-10	1.885e^-6	UPSTREAM IntS14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	14424516	2L_14424516_SNP [dm3] 2L_14424516_SNP [dm6]	C	T	9.823e^-10	1.896e^-6	NON_SYNONYMOUS_CODING Cpr35B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9675473	2L_9675473_SNP [dm3] 2L_9675473_SNP [dm6]	T	C	1.017e^-9	1.961e^-6	INTERGENIC
2L	1170621	2L_1170621_SNP [dm3] 2L_1170621_SNP [dm6]	A	G	1.019e^-9	1.963e^-6	SYNONYMOUS_CODING CG31922 UPSTREAM Plap DOWNSTREAM CG5118	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	2330754	2L_2330754_SNP [dm3] 2L_2330754_SNP [dm6]	A	T	1.063e^-9	2.045e^-6	UTR_5_PRIME CG9967 INTRON CG9967 & 1 other
3R	12706079	3R_12706079_INS [dm3] 3R_16880357_INS [dm6]	C	CT	1.164e^-9	2.237e^-6	INTRON iab-8
2R	16756257	2R_16756257_DEL [dm3] 2R_20868752_DEL [dm6]	TT	T	1.167e^-9	2.241e^-6	UTR_3_PRIME IM4 DOWNSTREAM IM4
3R	5923147	3R_5923147_SNP [dm3] 3R_10097425_SNP [dm6]	G	A	1.185e^-9	2.274e^-6	EXON CR43459
2L	17112203	2L_17112203_SNP [dm3] 2L_17112203_SNP [dm6]	T	G	1.197e^-9	2.294e^-6	INTERGENIC
2L	13203403	2L_13203403_DEL [dm3] 2L_13203403_DEL [dm6]	TT	A	1.208e^-9	2.313e^-6	UPSTREAM Pect & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9199378	2L_9199378_SNP [dm3] 2L_9199378_SNP [dm6]	C	A	1.220e^-9	2.332e^-6	INTRON tai
2R	3362714	2R_3362714_SNP [dm3] 2R_7475209_SNP [dm6]	T	C	1.246e^-9	2.379e^-6	UPSTREAM Aldh-III INTRON Aldh-III
3L	17384911	3L_17384911_SNP [dm3] 3L_17391811_SNP [dm6]	C	T	1.256e^-9	2.396e^-6	INTERGENIC	TF binding site mE1_TFBS_kn
3L	24379042	3L_24379042_SNP [dm3] 3L_24385942_SNP [dm6]	T	A	1.264e^-9	2.410e^-6	INTRON nvd
3L	12415376	3L_12415376_SNP [dm3] 3L_12422276_SNP [dm6]	A	G	1.269e^-9	2.416e^-6	DOWNSTREAM toe INTERGENIC
2R	763362	2R_763362_SNP [dm3] 2R_4875857_SNP [dm6]	A	C	1.276e^-9	2.425e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2R	764535	2R_764535_SNP [dm3] 2R_4877030_SNP [dm6]	G	T	1.276e^-9	2.425e^-6	INTERGENIC
3L	12019463	3L_12019463_SNP [dm3] 3L_12026363_SNP [dm6]	G	A	1.293e^-9	2.455e^-6	INTRON rols
3R	368013	3R_368013_INS [dm3] 3R_4542291_INS [dm6]	A	AACA	1.322e^-9	2.508e^-6	CODON_INSERTION Mur82C INTRON CG34357	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2R	16101673	2R_16101673_SNP [dm3] 2R_20214168_SNP [dm6]	A	G	1.334e^-9	2.527e^-6	INTERGENIC
3R	8477618	3R_8477618_SNP [dm3] 3R_12651896_SNP [dm6]	A	T	1.387e^-9	2.619e^-6	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8477697	3R_8477697_SNP [dm3] 3R_12651975_SNP [dm6]	C	A	1.387e^-9	2.619e^-6	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_sens
3R	8477725	3R_8477725_SNP [dm3] 3R_12652003_SNP [dm6]	A	C	1.387e^-9	2.619e^-6	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_sens
3L	5529148	3L_5529148_SNP [dm3] 3L_5536048_SNP [dm6]	T	G	1.396e^-9	2.627e^-6	UPSTREAM CG13285 INTERGENIC	TF binding site mE1_TFBS_inv
3L	7876093	3L_7876093_SNP [dm3] 3L_7882993_SNP [dm6]	T	C	1.396e^-9	2.627e^-6	INTRON CG32365
3R	7856211	3R_7856211_SNP [dm3] 3R_12030489_SNP [dm6]	T	G	1.396e^-9	2.627e^-6	NON_SYNONYMOUS_CODING CG31358 UTR_5_PRIME CG42505 & 1 other
X	16432147	X_16432147_SNP [dm3] X_16538114_SNP [dm6]	T	A	1.396e^-9	2.627e^-6	INTERGENIC
2L	11169782	2L_11169782_SNP [dm3] 2L_11169782_SNP [dm6]	A	G	1.417e^-9	2.663e^-6	INTRON Ca-beta
3L	4264971	3L_4264971_SNP [dm3] 3L_4264971_SNP [dm6]	A	G	1.418e^-9	2.663e^-6	INTRON CG1273
2L	11112440	2L_11112440_SNP [dm3] 2L_11112440_SNP [dm6]	C	T	1.430e^-9	2.676e^-6	INTRON CG6201	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11112442	2L_11112442_SNP [dm3] 2L_11112442_SNP [dm6]	G	C	1.430e^-9	2.676e^-6	INTRON CG6201	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11112444	2L_11112444_SNP [dm3] 2L_11112444_SNP [dm6]	C	T	1.430e^-9	2.676e^-6	INTRON CG6201	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5194928	3L_5194928_SNP [dm3] 3L_5201828_SNP [dm6]	G	A	1.474e^-9	2.746e^-6	UPSTREAM shep INTRON shep
3L	5196135	3L_5196135_SNP [dm3] 3L_5203035_SNP [dm6]	T	A	1.474e^-9	2.746e^-6	INTRON shep
3L	5196140	3L_5196140_SNP [dm3] 3L_5203040_SNP [dm6]	T	C	1.474e^-9	2.746e^-6	INTRON shep
3L	5198798	3L_5198798_SNP [dm3] 3L_5205698_SNP [dm6]	A	G	1.474e^-9	2.746e^-6	INTRON shep
3L	5199272	3L_5199272_SNP [dm3] 3L_5206172_SNP [dm6]	G	T	1.474e^-9	2.746e^-6	INTRON shep
2R	16756266	2R_16756266_SNP [dm3] 2R_20868761_SNP [dm6]	T	A	1.559e^-9	2.898e^-6	UTR_3_PRIME IM4 DOWNSTREAM IM4

By genomic position
Variant impact
Gene name

Microbiota_OTU023 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results