DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.909e^-11)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.026401
In_2L_t	0.066481
In_2R_NS	0.081749

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

5955 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	18454209	2R_18454209_DEL [dm3] 2R_22566704_DEL [dm6]	TATG	A	1.294e^-12	8.023e^-7	INTRON dnr1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18455276	2R_18455276_SNP [dm3] 2R_22567771_SNP [dm6]	G	T	1.294e^-12	8.023e^-7	INTRON dnr1
2R	18455328	2R_18455328_SNP [dm3] 2R_22567823_SNP [dm6]	G	A	1.294e^-12	8.023e^-7	INTRON dnr1
2R	18454239	2R_18454239_SNP [dm3] 2R_22566734_SNP [dm6]	G	A	4.589e^-12	1.707e^-6	INTRON dnr1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18454240	2R_18454240_SNP [dm3] 2R_22566735_SNP [dm6]	G	A	4.589e^-12	1.707e^-6	INTRON dnr1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2134166	2L_2134166_SNP [dm3] 2L_2134166_SNP [dm6]	G	A	5.518e^-12	1.711e^-6	INTRON GlyP
2L	13008859	2L_13008859_SNP [dm3] 2L_13008859_SNP [dm6]	G	T	9.244e^-12	2.457e^-6	SYNONYMOUS_CODING Tor
X	8111979	X_8111979_SNP [dm3] X_8217946_SNP [dm6]	A	T	1.210e^-11	2.815e^-6	INTRON sdt	TF binding site BDTNP1_TFBS_dl
2R	18450899	2R_18450899_SNP [dm3] 2R_22563394_SNP [dm6]	T	C	1.844e^-11	3.538e^-6	UTR_3_PRIME dnr1 DOWNSTREAM dnr1 & 1 other
X	8111885	X_8111885_SNP [dm3] X_8217852_SNP [dm6]	G	C	1.902e^-11	3.538e^-6	INTRON sdt	TF binding site BDTNP1_TFBS_dl
2L	13049945	2L_13049945_INS [dm3] 2L_13049945_INS [dm6]	C	CC	3.845e^-11	6.503e^-6	INTRON CG9932
X	4289262	X_4289262_SNP [dm3] X_4395229_SNP [dm6]	A	G	4.966e^-11	7.699e^-6	INTRON CR32773
X	4289517	X_4289517_SNP [dm3] X_4395484_SNP [dm6]	A	T	6.998e^-11	1.002e^-5	INTRON CR32773	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18169882	2R_18169882_SNP [dm3] 2R_22282377_SNP [dm6]	A	C	1.289e^-10	1.713e^-5	INTRON dve	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	8111915	X_8111915_SNP [dm3] X_8217882_SNP [dm6]	A	G	2.042e^-10	2.532e^-5	INTRON sdt	TF binding site BDTNP1_TFBS_dl
3L	7352965	3L_7352965_SNP [dm3] 3L_7359865_SNP [dm6]	G	T	3.304e^-10	3.616e^-5	UPSTREAM Sec63 INTRON pst
3L	7353067	3L_7353067_SNP [dm3] 3L_7359967_SNP [dm6]	T	C	3.304e^-10	3.616e^-5	NON_SYNONYMOUS_CODING pst UPSTREAM Sec63
2R	13083572	2R_13083572_SNP [dm3] 2R_17196067_SNP [dm6]	C	T	3.842e^-10	3.971e^-5	NON_SYNONYMOUS_CODING CG10950	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12005862	3L_12005862_SNP [dm3] 3L_12012762_SNP [dm6]	T	C	4.294e^-10	4.204e^-5	INTRON rols	TF binding site mE1_TFBS_cad
X	12282169	X_12282169_SNP [dm3] X_12388136_SNP [dm6]	T	C	7.907e^-10	6.826e^-5	INTERGENIC
2L	15119639	2L_15119639_SNP [dm3] 2L_15119639_SNP [dm6]	A	G	8.071e^-10	6.826e^-5	UPSTREAM CR43853 INTERGENIC
2R	15673316	2R_15673316_SNP [dm3] 2R_19785811_SNP [dm6]	G	A	8.071e^-10	6.826e^-5	EXON CR45231	regulatory region REDfly_CRMs
2L	15132399	2L_15132399_SNP [dm3] 2L_15132399_SNP [dm6]	T	C	8.895e^-10	7.195e^-5	UPSTREAM tRNA:L:35C INTERGENIC
3L	1456694	3L_1456694_SNP [dm3] 3L_1456694_SNP [dm6]	G	A	9.890e^-10	7.666e^-5	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15729032	2R_15729032_SNP [dm3] 2R_19841527_SNP [dm6]	G	A	1.103e^-9	8.208e^-5	DOWNSTREAM CG44569 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2332894	2L_2332894_SNP [dm3] 2L_2332894_SNP [dm6]	C	T	1.320e^-9	8.809e^-5	INTRON CG9967 & 1 other
X	19954569	X_19954569_SNP [dm3] X_20060536_SNP [dm6]	G	A	1.326e^-9	8.809e^-5	INTRON Dop2R
X	19954637	X_19954637_SNP [dm3] X_20060604_SNP [dm6]	C	G	1.326e^-9	8.809e^-5	INTRON Dop2R
3L	980878	3L_980878_SNP [dm3] 3L_980878_SNP [dm6]	A	T	1.413e^-9	9.063e^-5	DOWNSTREAM Glut1 INTRON Glut1	TF binding site mE1_TFBS_chinmo
X	16224721	X_16224721_SNP [dm3] X_16330688_SNP [dm6]	A	G	1.467e^-9	9.096e^-5	DOWNSTREAM CG9921 INTRON CG9919	TF binding site BDTNP1_TFBS_dl
2L	7067909	2L_7067909_SNP [dm3] 2L_7067909_SNP [dm6]	T	G	1.962e^-9	1.177e^-4	UPSTREAM CG11289 INTERGENIC
2L	18396969	2L_18396969_SNP [dm3] 2L_18396969_SNP [dm6]	C	G	2.423e^-9	1.409e^-4	INTERGENIC
2R	19265903	2R_19265903_SNP [dm3] 2R_23378380_SNP [dm6]	T	G	2.858e^-9	1.611e^-4	UPSTREAM yellow-d INTRON CG13551	TF binding site mE1_TFBS_cad
3L	7349970	3L_7349970_SNP [dm3] 3L_7356870_SNP [dm6]	G	C	3.335e^-9	1.677e^-4	UPSTREAM CTCF DOWNSTREAM pst INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1 transposable element FlyBase
3L	7350927	3L_7350927_SNP [dm3] 3L_7357827_SNP [dm6]	T	C	3.335e^-9	1.677e^-4	NON_SYNONYMOUS_CODING pst	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	7350928	3L_7350928_SNP [dm3] 3L_7357828_SNP [dm6]	T	C	3.335e^-9	1.677e^-4	NON_SYNONYMOUS_CODING pst	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	7350937	3L_7350937_SNP [dm3] 3L_7357837_SNP [dm6]	G	A	3.335e^-9	1.677e^-4	NON_SYNONYMOUS_CODING pst	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	10846051	2R_10846051_SNP [dm3] 2R_14958546_SNP [dm6]	G	T	3.454e^-9	1.691e^-4	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13018232	2L_13018232_SNP [dm3] 2L_13018232_SNP [dm6]	C	G	3.758e^-9	1.793e^-4	INTRON CG9934
2R	19264311	2R_19264311_INS [dm3] 2R_23376788_INS [dm6]	T	TT	4.170e^-9	1.939e^-4	INTRON Golgin245	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	4290218	X_4290218_SNP [dm3] X_4396185_SNP [dm6]	A	G	4.411e^-9	2.001e^-4	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18455329	2R_18455329_SNP [dm3] 2R_22567824_SNP [dm6]	T	C	4.652e^-9	2.061e^-4	INTRON dnr1
X	1165472	X_1165472_SNP [dm3] X_1271439_SNP [dm6]	A	G	5.743e^-9	2.485e^-4	INTRON Atf3	TF binding site BDTNP1_TFBS_dl
2L	16061313	2L_16061313_SNP [dm3] 2L_16061313_SNP [dm6]	A	C	6.232e^-9	2.635e^-4	INTRON beat-Ia
2R	4545151	2R_4545151_SNP [dm3] 2R_8657646_SNP [dm6]	G	C	6.376e^-9	2.636e^-4	INTRON ptc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
X	12638385	X_12638385_SNP [dm3] X_12744352_SNP [dm6]	C	A	6.674e^-9	2.699e^-4	UTR_5_PRIME CG4004 UPSTREAM CG4004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8112007	X_8112007_SNP [dm3] X_8217974_SNP [dm6]	G	A	7.770e^-9	3.076e^-4	INTRON sdt	TF binding site BDTNP1_TFBS_dl
3L	12650756	3L_12650756_DEL [dm3] 3L_12657656_DEL [dm6]	TTATTCTATGCAAATCGTAT...	T	8.188e^-9	3.109e^-4	INTERGENIC
X	10461460	X_10461460_SNP [dm3] X_10567427_SNP [dm6]	C	T	8.188e^-9	3.109e^-4	UPSTREAM CG15296 INTRON spri
2R	14982741	2R_14982741_SNP [dm3] 2R_19095236_SNP [dm6]	T	G	8.992e^-9	3.346e^-4	SYNONYMOUS_CODING Ir56a INTRON 5-HT1A
2R	725781	2R_725781_SNP [dm3] 2R_4838276_SNP [dm6]	G	C	1.060e^-8	3.868e^-4	INTERGENIC
X	14246859	X_14246859_SNP [dm3] X_14352826_SNP [dm6]	C	T	1.129e^-8	4.039e^-4	INTRON dpr8
3L	14059741	3L_14059741_SNP [dm3] 3L_14066641_SNP [dm6]	G	A	1.189e^-8	4.175e^-4	SYNONYMOUS_CODING CG32138	TF binding site mE1_TFBS_cad
3R	18954381	3R_18954381_SNP [dm3] 3R_23128659_SNP [dm6]	C	T	1.240e^-8	4.271e^-4	UTR_3_PRIME hh UPSTREAM CG31457	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	2134792	2L_2134792_SNP [dm3] 2L_2134792_SNP [dm6]	G	A	1.288e^-8	4.315e^-4	SYNONYMOUS_CODING GlyP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1580936	2R_1580936_SNP [dm3] 2R_5693431_SNP [dm6]	C	T	1.299e^-8	4.315e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3R	19771255	3R_19771255_SNP [dm3] 3R_23945533_SNP [dm6]	G	T	1.350e^-8	4.406e^-4	INTRON CG12268	TF binding site mE1_TFBS_cad
2L	2334943	2L_2334943_SNP [dm3] 2L_2334943_SNP [dm6]	T	G	1.400e^-8	4.490e^-4	INTRON CG9967 & 1 other
2L	10113873	2L_10113873_SNP [dm3] 2L_10113873_SNP [dm6]	A	G	1.466e^-8	4.578e^-4	INTRON CG44153 & 1 other
3R	18691564	3R_18691564_INS [dm3] 3R_22865842_INS [dm6]	A	AA	1.477e^-8	4.578e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18452935	2R_18452935_SNP [dm3] 2R_22565430_SNP [dm6]	T	C	1.503e^-8	4.585e^-4	INTRON dnr1	TF binding site mE1_TFBS_GATAe
2R	15549858	2R_15549858_SNP [dm3] 2R_19662353_SNP [dm6]	G	A	1.566e^-8	4.625e^-4	UPSTREAM mir-4 & 5 others INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	2126487	2L_2126487_SNP [dm3] 2L_2126487_SNP [dm6]	C	T	1.566e^-8	4.625e^-4	DOWNSTREAM CG4259 INTERGENIC
3L	12682974	3L_12682974_DEL [dm3] 3L_12689874_DEL [dm6]	CCCAC	C	1.736e^-8	4.926e^-4	INTERGENIC
X	19660917	X_19660917_SNP [dm3] X_19766884_SNP [dm6]	G	A	1.746e^-8	4.926e^-4	UTR_3_PRIME vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	10856423	3L_10856423_SNP [dm3] 3L_10863323_SNP [dm6]	G	A	1.747e^-8	4.926e^-4	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens
X	19660724	X_19660724_SNP [dm3] X_19766691_SNP [dm6]	T	C	1.780e^-8	4.944e^-4	UTR_3_PRIME vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13083516	2R_13083516_SNP [dm3] 2R_17196011_SNP [dm6]	T	G	1.942e^-8	5.313e^-4	SYNONYMOUS_CODING CG10950	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	795610	2R_795610_DEL [dm3] 2R_4908105_DEL [dm6]	GCCATAAACCGA...	G	2.004e^-8	5.403e^-4	UPSTREAM CG44102 INTERGENIC	transposable element FlyBase
3R	25394902	3R_25394902_SNP [dm3] 3R_29569180_SNP [dm6]	A	G	2.149e^-8	5.712e^-4	INTERGENIC
X	19629800	X_19629800_SNP [dm3] X_19735767_SNP [dm6]	G	T	2.252e^-8	5.901e^-4	UTR_5_PRIME CG14234	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19946309	2L_19946309_SNP [dm3] 2L_19946309_SNP [dm6]	G	A	2.453e^-8	6.340e^-4	SYNONYMOUS_CODING sick INTRON sick	TF binding site mE1_TFBS_chinmo
2R	18088442	2R_18088442_SNP [dm3] 2R_22200937_SNP [dm6]	A	T	2.498e^-8	6.365e^-4	UPSTREAM CR45376 INTRON Swim
3L	6994718	3L_6994718_SNP [dm3] 3L_7001618_SNP [dm6]	C	T	2.775e^-8	6.976e^-4	INTRON Mp
3R	12006304	3R_12006304_SNP [dm3] 3R_16180582_SNP [dm6]	G	A	2.897e^-8	7.186e^-4	UPSTREAM CG8927 DOWNSTREAM CG8925 INTERGENIC
3R	7340944	3R_7340944_DEL [dm3] 3R_11515222_DEL [dm6]	CTCTTTTTGAAAGTTAGAA...	C	2.983e^-8	7.302e^-4	INTERGENIC
2R	4545145	2R_4545145_SNP [dm3] 2R_8657640_SNP [dm6]	C	T	3.113e^-8	7.523e^-4	INTRON ptc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
X	13599815	X_13599815_SNP [dm3] X_13705782_SNP [dm6]	A	G	3.220e^-8	7.681e^-4	START_GAINED NnaD UTR_5_PRIME NnaD INTRON NnaD & 1 other
X	19660415	X_19660415_SNP [dm3] X_19766382_SNP [dm6]	T	G	3.391e^-8	7.986e^-4	DOWNSTREAM vfl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	4244353	X_4244353_DEL [dm3] X_4350320_DEL [dm6]	TCTCCGCAT	T	3.600e^-8	8.372e^-4	INTRON norpA
2L	3682220	2L_3682220_SNP [dm3] 2L_3682220_SNP [dm6]	A	T	3.736e^-8	8.581e^-4	INTRON CG34340	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5849160	2L_5849160_SNP [dm3] 2L_5849160_SNP [dm6]	T	C	3.998e^-8	8.975e^-4	INTRON TrissinR
3L	15315117	3L_15315117_SNP [dm3] 3L_15322017_SNP [dm6]	A	T	4.011e^-8	8.975e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	4291775	X_4291775_SNP [dm3] X_4397742_SNP [dm6]	C	A	4.052e^-8	8.975e^-4	INTRON CR32773
X	19277918	X_19277918_SNP [dm3] X_19383885_SNP [dm6]	G	A	4.375e^-8	9.194e^-4	INTRON kek5
X	19277935	X_19277935_SNP [dm3] X_19383902_SNP [dm6]	G	A	4.375e^-8	9.194e^-4	INTRON kek5
3L	1137706	3L_1137706_SNP [dm3] 3L_1137706_SNP [dm6]	G	C	4.382e^-8	9.194e^-4	INTERGENIC
3L	15944822	3L_15944822_SNP [dm3] 3L_15951722_SNP [dm6]	G	T	4.491e^-8	9.194e^-4	INTRON Pka-C3
2L	5849168	2L_5849168_SNP [dm3] 2L_5849168_SNP [dm6]	A	G	4.530e^-8	9.194e^-4	INTRON TrissinR
3L	15944859	3L_15944859_DEL [dm3] 3L_15951759_DEL [dm6]	AACATTATGACGAGTTA...	A	4.533e^-8	9.194e^-4	INTRON Pka-C3
3L	8565788	3L_8565788_SNP [dm3] 3L_8572688_SNP [dm6]	T	C	4.540e^-8	9.194e^-4	DOWNSTREAM mir-190 INTRON rhea
X	20362718	X_20362718_SNP [dm3] X_20491691_SNP [dm6]	A	G	4.596e^-8	9.194e^-4	UPSTREAM RhoGAP19D INTRON RhoGAP19D
X	20362749	X_20362749_SNP [dm3] X_20491722_SNP [dm6]	A	G	4.596e^-8	9.194e^-4	UPSTREAM RhoGAP19D INTRON RhoGAP19D
3R	25394896	3R_25394896_SNP [dm3] 3R_29569174_SNP [dm6]	T	G	4.802e^-8	9.503e^-4	INTERGENIC
3R	26160970	3R_26160970_INS [dm3] 3R_30335248_INS [dm6]	T	TGC	5.240e^-8	0.001	INTRON hdc
3L	7337373	3L_7337373_SNP [dm3] 3L_7344273_SNP [dm6]	G	A	5.310e^-8	0.001	START_GAINED CG8596 UTR_5_PRIME CG8596 UPSTREAM CG8596 INTRON CG8596	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	19277916	X_19277916_SNP [dm3] X_19383883_SNP [dm6]	G	T	5.603e^-8	0.001	INTRON kek5
X	4868770	X_4868770_SNP [dm3] X_4974737_SNP [dm6]	G	A	5.690e^-8	0.001	INTRON CR44833
2L	8161966	2L_8161966_SNP [dm3] 2L_8161966_SNP [dm6]	A	T	5.820e^-8	0.001	SYNONYMOUS_CODING CG8498 DOWNSTREAM Rbsn-5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	20362562	X_20362562_SNP [dm3] X_20491535_SNP [dm6]	G	A	6.132e^-8	0.001	UPSTREAM RhoGAP19D INTRON RhoGAP19D
2R	19264238	2R_19264238_SNP [dm3] 2R_23376715_SNP [dm6]	G	A	6.566e^-8	0.001	INTRON Golgin245	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9984626	3L_9984626_SNP [dm3] 3L_9991526_SNP [dm6]	C	T	6.679e^-8	0.001	INTRON dpr6
X	6606813	X_6606813_SNP [dm3] X_6712780_SNP [dm6]	G	A	6.710e^-8	0.001	NON_SYNONYMOUS_CODING CG14441	TF binding site mE1_TFBS_sens
X	4292031	X_4292031_DEL [dm3] X_4397998_DEL [dm6]	TTCA	T	7.005e^-8	0.001	INTRON CR32773
3L	1130316	3L_1130316_SNP [dm3] 3L_1130316_SNP [dm6]	A	C	7.250e^-8	0.001	INTERGENIC	regulatory region REDfly_CRMs
X	19660442	X_19660442_SNP [dm3] X_19766409_SNP [dm6]	G	T	7.697e^-8	0.001	DOWNSTREAM vfl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	16448549	X_16448549_SNP [dm3] X_16554516_SNP [dm6]	A	G	8.017e^-8	0.001	UPSTREAM Arp2 DOWNSTREAM Pp2B-14D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2L	12010265	2L_12010265_SNP [dm3] 2L_12010265_SNP [dm6]	C	G	8.086e^-8	0.001	DOWNSTREAM Rh5 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	20362773	X_20362773_SNP [dm3] X_20491746_SNP [dm6]	T	C	8.210e^-8	0.001	UPSTREAM RhoGAP19D INTRON RhoGAP19D
2R	18353895	2R_18353895_SNP [dm3] 2R_22466390_SNP [dm6]	C	T	8.436e^-8	0.001	INTRON CG10384
X	20362649	X_20362649_SNP [dm3] X_20491622_SNP [dm6]	A	G	9.027e^-8	0.001	UPSTREAM RhoGAP19D INTRON RhoGAP19D
X	12373050	X_12373050_SNP [dm3] X_12479017_SNP [dm6]	T	C	9.141e^-8	0.001	DOWNSTREAM CG42258 INTERGENIC
X	12373053	X_12373053_SNP [dm3] X_12479020_SNP [dm6]	T	A	9.141e^-8	0.001	DOWNSTREAM CG42258 INTERGENIC
X	12373066	X_12373066_SNP [dm3] X_12479033_SNP [dm6]	G	A	9.141e^-8	0.001	DOWNSTREAM CG42258 INTERGENIC
X	12053712	X_12053712_SNP [dm3] X_12159679_SNP [dm6]	T	C	9.423e^-8	0.002	INTRON Ten-a
X	20362632	X_20362632_SNP [dm3] X_20491605_SNP [dm6]	C	T	9.554e^-8	0.002	UPSTREAM RhoGAP19D INTRON RhoGAP19D
X	20362483	X_20362483_DEL [dm3] X_20491456_DEL [dm6]	ACCAAACATATGTAA...	A	9.656e^-8	0.002	UPSTREAM RhoGAP19D INTRON RhoGAP19D
3L	2202687	3L_2202687_SNP [dm3] 3L_2202687_SNP [dm6]	C	T	9.892e^-8	0.002	INTERGENIC
3L	15315074	3L_15315074_SNP [dm3] 3L_15321974_SNP [dm6]	G	T	9.998e^-8	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	18369801	2R_18369801_SNP [dm3] 2R_22482296_SNP [dm6]	C	T	1.082e^-7	0.002	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15314874	3L_15314874_SNP [dm3] 3L_15321774_SNP [dm6]	G	T	1.107e^-7	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	26789443	3R_26789443_SNP [dm3] 3R_30963721_SNP [dm6]	G	A	1.120e^-7	0.002	SYNONYMOUS_CODING Ctr1C
3L	7456936	3L_7456936_SNP [dm3] 3L_7463836_SNP [dm6]	C	T	1.170e^-7	0.002	INTERGENIC
3L	7456958	3L_7456958_SNP [dm3] 3L_7463858_SNP [dm6]	T	A	1.170e^-7	0.002	INTERGENIC
2R	14128960	2R_14128960_SNP [dm3] 2R_18241455_SNP [dm6]	A	T	1.177e^-7	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12387975	3L_12387975_SNP [dm3] 3L_12394875_SNP [dm6]	T	C	1.177e^-7	0.002	INTRON CG32104
3L	12387979	3L_12387979_SNP [dm3] 3L_12394879_SNP [dm6]	G	T	1.177e^-7	0.002	INTRON CG32104
X	2476359	X_2476359_SNP [dm3] X_2582326_SNP [dm6]	A	G	1.177e^-7	0.002	UPSTREAM CG13759 INTRON CG13759	TF binding site BDTNP1_TFBS_dl
X	7968150	X_7968150_SNP [dm3] X_8074117_SNP [dm6]	C	T	1.177e^-7	0.002	NON_SYNONYMOUS_CODING Upf2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	7968501	X_7968501_SNP [dm3] X_8074468_SNP [dm6]	A	G	1.177e^-7	0.002	SYNONYMOUS_CODING Upf2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	7968502	X_7968502_SNP [dm3] X_8074469_SNP [dm6]	A	G	1.177e^-7	0.002	SYNONYMOUS_CODING Upf2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	7968517	X_7968517_SNP [dm3] X_8074484_SNP [dm6]	A	G	1.177e^-7	0.002	SYNONYMOUS_CODING Upf2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	7968724	X_7968724_SNP [dm3] X_8074691_SNP [dm6]	C	T	1.177e^-7	0.002	SYNONYMOUS_CODING Upf2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	7969106	X_7969106_SNP [dm3] X_8075073_SNP [dm6]	G	A	1.177e^-7	0.002	NON_SYNONYMOUS_CODING Upf2 UPSTREAM CG1571	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	7970103	X_7970103_SNP [dm3] X_8076070_SNP [dm6]	G	T	1.177e^-7	0.002	UTR_5_PRIME CG1571 UPSTREAM Upf2	TF binding site BDTNP1_TFBS_dl
2L	17856929	2L_17856929_DEL [dm3] 2L_17856929_DEL [dm6]	AA	A	1.237e^-7	0.002	INTRON CadN2
2R	18455583	2R_18455583_SNP [dm3] 2R_22568078_SNP [dm6]	C	T	1.264e^-7	0.002	INTRON dnr1	TF binding site mE1_TFBS_Trl
2R	15551302	2R_15551302_SNP [dm3] 2R_19663797_SNP [dm6]	C	A	1.317e^-7	0.002	DOWNSTREAM hrg & 1 other INTERGENIC
2L	5392843	2L_5392843_SNP [dm3] 2L_5392843_SNP [dm6]	G	A	1.406e^-7	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4297425	X_4297425_INS [dm3] X_4403392_INS [dm6]	A	AA	1.439e^-7	0.002	INTRON CR32773
3L	9579452	3L_9579452_INS [dm3] 3L_9586352_INS [dm6]	CC	ATA	1.461e^-7	0.002	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	695473	3L_695473_SNP [dm3] 3L_695473_SNP [dm6]	T	C	1.477e^-7	0.002	INTRON CG13894	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	11175087	2L_11175087_DEL [dm3] 2L_11175087_DEL [dm6]	TT	T	1.479e^-7	0.002	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13614588	2L_13614588_SNP [dm3] 2L_13614588_SNP [dm6]	A	G	1.479e^-7	0.002	INTRON kuz
X	7968369	X_7968369_SNP [dm3] X_8074336_SNP [dm6]	C	A	1.479e^-7	0.002	NON_SYNONYMOUS_CODING Upf2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	19068354	X_19068354_SNP [dm3] X_19174321_SNP [dm6]	T	A	1.589e^-7	0.002	INTRON pncr004:X
X	7969735	X_7969735_SNP [dm3] X_8075702_SNP [dm6]	A	G	1.636e^-7	0.002	UPSTREAM CG1571 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	23728715	3R_23728715_SNP [dm3] 3R_27902993_SNP [dm6]	A	C	1.749e^-7	0.002	INTRON CG34353
3L	14618307	3L_14618307_SNP [dm3] 3L_14625207_SNP [dm6]	G	A	1.758e^-7	0.002	INTRON CG9628	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	9604071	3L_9604071_SNP [dm3] 3L_9610971_SNP [dm6]	T	A	1.827e^-7	0.002	INTRON CG3280
2R	5310942	2R_5310942_SNP [dm3] 2R_9423437_SNP [dm6]	C	G	1.864e^-7	0.002	SYNONYMOUS_CODING CG13955 UPSTREAM prel
2R	5311604	2R_5311604_SNP [dm3] 2R_9424099_SNP [dm6]	C	T	1.864e^-7	0.002	UTR_5_PRIME prel UPSTREAM CG13955	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9267137	2R_9267137_SNP [dm3] 2R_13379632_SNP [dm6]	T	C	1.937e^-7	0.002	INTERGENIC
3R	18761374	3R_18761374_SNP [dm3] 3R_22935652_SNP [dm6]	G	A	1.973e^-7	0.002	INTRON klg
X	12950398	X_12950398_DEL [dm3] X_13056365_DEL [dm6]	ACA	A	1.977e^-7	0.002	INTRON rad
2R	16962685	2R_16962685_SNP [dm3] 2R_21075180_SNP [dm6]	G	C	2.071e^-7	0.002	UPSTREAM Treh INTRON Treh	TF binding site mE1_TFBS_Trl
2R	16729464	2R_16729464_SNP [dm3] 2R_20841959_SNP [dm6]	G	T	2.101e^-7	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18762254	2R_18762254_SNP [dm3] 2R_22874731_SNP [dm6]	C	A	2.118e^-7	0.002	UPSTREAM PIP5K59B DOWNSTREAM CG13532 EXON CR45469	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2536137	2R_2536137_SNP [dm3] 2R_6648632_SNP [dm6]	C	A	2.152e^-7	0.002	UPSTREAM debcl INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19409262	2R_19409262_SNP [dm3] 2R_23521739_SNP [dm6]	G	A	2.164e^-7	0.002	INTRON RabX1
X	4289333	X_4289333_SNP [dm3] X_4395300_SNP [dm6]	A	G	2.167e^-7	0.002	INTRON CR32773
X	4289636	X_4289636_SNP [dm3] X_4395603_SNP [dm6]	T	G	2.167e^-7	0.002	INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	4290171	X_4290171_SNP [dm3] X_4396138_SNP [dm6]	C	T	2.167e^-7	0.002	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	4290212	X_4290212_SNP [dm3] X_4396179_SNP [dm6]	A	G	2.167e^-7	0.002	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15354359	3L_15354359_SNP [dm3] 3L_15361259_SNP [dm6]	G	T	2.191e^-7	0.002	INTERGENIC
2R	20512422	2R_20512422_SNP [dm3] 2R_24624899_SNP [dm6]	G	A	2.238e^-7	0.003	INTRON CG13594
2R	15551388	2R_15551388_SNP [dm3] 2R_19663883_SNP [dm6]	C	A	2.257e^-7	0.003	DOWNSTREAM hrg & 1 other INTERGENIC
3L	12387148	3L_12387148_SNP [dm3] 3L_12394048_SNP [dm6]	G	A	2.291e^-7	0.003	INTRON CG32104
2R	784740	2R_784740_SNP [dm3] 2R_4897235_SNP [dm6]	G	A	2.292e^-7	0.003	INTRON CG44102	transposable element FlyBase
3L	7588921	3L_7588921_SNP [dm3] 3L_7595821_SNP [dm6]	A	G	2.405e^-7	0.003	INTRON CG33275
X	1167774	X_1167774_SNP [dm3] X_1273741_SNP [dm6]	T	A	2.434e^-7	0.003	INTRON Atf3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21851064	X_21851064_SNP [dm3] X_22449228_SNP [dm6]	G	A	2.455e^-7	0.003	NON_SYNONYMOUS_CODING CG14615 UPSTREAM tilB
2R	725006	2R_725006_SNP [dm3] 2R_4837501_SNP [dm6]	G	A	2.460e^-7	0.003	INTERGENIC
X	13485999	X_13485999_SNP [dm3] X_13591966_SNP [dm6]	T	A	2.473e^-7	0.003	UTR_3_PRIME Tango13 DOWNSTREAM Tango13
3R	16571913	3R_16571913_SNP [dm3] 3R_20746191_SNP [dm6]	C	A	2.490e^-7	0.003	UPSTREAM CG31200 INTRON CG42322	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18192965	2R_18192965_SNP [dm3] 2R_22305460_SNP [dm6]	C	T	2.539e^-7	0.003	INTRON wdp
X	14247955	X_14247955_SNP [dm3] X_14353922_SNP [dm6]	T	C	2.559e^-7	0.003	INTRON dpr8
2R	16272040	2R_16272040_SNP [dm3] 2R_20384535_SNP [dm6]	A	T	2.609e^-7	0.003	INTERGENIC
2R	16272109	2R_16272109_DEL [dm3] 2R_20384604_DEL [dm6]	TGTATCAT	T	2.609e^-7	0.003	INTERGENIC
2R	16272118	2R_16272118_SNP [dm3] 2R_20384613_SNP [dm6]	T	G	2.609e^-7	0.003	INTERGENIC
2R	6978839	2R_6978839_SNP [dm3] 2R_11091334_SNP [dm6]	C	A	2.611e^-7	0.003	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	6978869	2R_6978869_SNP [dm3] 2R_11091364_SNP [dm6]	G	C	2.611e^-7	0.003	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	5310306	2R_5310306_SNP [dm3] 2R_9422801_SNP [dm6]	T	G	2.622e^-7	0.003	NON_SYNONYMOUS_CODING CG13955	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18455290	2R_18455290_SNP [dm3] 2R_22567785_SNP [dm6]	C	T	2.623e^-7	0.003	INTRON dnr1
2L	20330603	2L_20330603_SNP [dm3] 2L_20330603_SNP [dm6]	C	T	2.634e^-7	0.003	INTRON spir
2R	18762021	2R_18762021_SNP [dm3] 2R_22874498_SNP [dm6]	A	G	2.640e^-7	0.003	UPSTREAM PIP5K59B DOWNSTREAM CR45469 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18762108	2R_18762108_SNP [dm3] 2R_22874585_SNP [dm6]	C	T	2.640e^-7	0.003	UPSTREAM PIP5K59B DOWNSTREAM CG13532 EXON CR45469	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21858791	X_21858791_SNP [dm3] X_22456955_SNP [dm6]	G	T	2.693e^-7	0.003	UTR_5_PRIME CG14619 INTRON CG14619	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3682228	2L_3682228_SNP [dm3] 2L_3682228_SNP [dm6]	G	A	2.748e^-7	0.003	INTRON CG34340	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21386391	3R_21386391_SNP [dm3] 3R_25560669_SNP [dm6]	G	C	3.049e^-7	0.003	INTRON msi
X	7271939	X_7271939_SNP [dm3] X_7377906_SNP [dm6]	A	G	3.244e^-7	0.003	UPSTREAM CheA7a INTRON CG1677 & 1 other
3R	21386392	3R_21386392_SNP [dm3] 3R_25560670_SNP [dm6]	T	C	3.327e^-7	0.003	INTRON msi
3L	9579505	3L_9579505_SNP [dm3] 3L_9586405_SNP [dm6]	C	T	3.423e^-7	0.003	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2133169	2L_2133169_SNP [dm3] 2L_2133169_SNP [dm6]	A	T	3.582e^-7	0.003	INTRON GlyP
3L	15750714	3L_15750714_SNP [dm3] 3L_15757614_SNP [dm6]	G	T	3.715e^-7	0.004	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20018096	2L_20018096_SNP [dm3] 2L_20018096_SNP [dm6]	A	C	3.812e^-7	0.004	UPSTREAM CG43861 INTERGENIC
2L	20018415	2L_20018415_SNP [dm3] 2L_20018415_SNP [dm6]	T	C	3.812e^-7	0.004	INTERGENIC
2R	19773732	2R_19773732_SNP [dm3] 2R_23886209_SNP [dm6]	A	C	4.043e^-7	0.004	UPSTREAM CG5597 INTERGENIC
2R	19773733	2R_19773733_SNP [dm3] 2R_23886210_SNP [dm6]	C	T	4.043e^-7	0.004	UPSTREAM CG5597 INTERGENIC
3L	9885769	3L_9885769_SNP [dm3] 3L_9892669_SNP [dm6]	A	C	4.063e^-7	0.004	UTR_3_PRIME CalpB DOWNSTREAM CG6709 & 1 other
3L	9885771	3L_9885771_SNP [dm3] 3L_9892671_SNP [dm6]	C	T	4.063e^-7	0.004	UTR_3_PRIME CalpB DOWNSTREAM CG6709 & 1 other
2R	20392453	2R_20392453_SNP [dm3] 2R_24504930_SNP [dm6]	T	A	4.118e^-7	0.004	INTERGENIC
2R	20392461	2R_20392461_SNP [dm3] 2R_24504938_SNP [dm6]	C	T	4.118e^-7	0.004	INTERGENIC
2R	18555713	2R_18555713_SNP [dm3] 2R_22668208_SNP [dm6]	G	A	4.162e^-7	0.004	SYNONYMOUS_CODING CG30269 UPSTREAM CG13516 DOWNSTREAM CG30273	TF binding site mE1_TFBS_cad
3L	308478	3L_308478_SNP [dm3] 3L_308478_SNP [dm6]	G	T	4.162e^-7	0.004	NON_SYNONYMOUS_CODING fwd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2134816	2L_2134816_SNP [dm3] 2L_2134816_SNP [dm6]	G	T	4.241e^-7	0.004	SYNONYMOUS_CODING GlyP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9195311	2R_9195311_SNP [dm3] 2R_13307806_SNP [dm6]	G	T	4.299e^-7	0.004	INTERGENIC
3R	27103058	3R_27103058_SNP [dm3] 3R_31277336_SNP [dm6]	T	G	4.340e^-7	0.004	INTERGENIC
3L	11420540	3L_11420540_SNP [dm3] 3L_11427440_SNP [dm6]	T	G	4.423e^-7	0.004	INTERGENIC
X	12281697	X_12281697_SNP [dm3] X_12387664_SNP [dm6]	C	T	4.498e^-7	0.004	INTERGENIC
X	5920244	X_5920244_SNP [dm3] X_6026211_SNP [dm6]	C	A	4.548e^-7	0.004	INTERGENIC
3R	16204156	3R_16204156_SNP [dm3] 3R_20378434_SNP [dm6]	G	T	4.598e^-7	0.004	DOWNSTREAM Gfrl INTERGENIC
2R	16271998	2R_16271998_SNP [dm3] 2R_20384493_SNP [dm6]	T	C	4.606e^-7	0.004	INTERGENIC
2R	10846060	2R_10846060_SNP [dm3] 2R_14958555_SNP [dm6]	A	G	4.641e^-7	0.004	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10846078	2R_10846078_SNP [dm3] 2R_14958573_SNP [dm6]	G	C	4.641e^-7	0.004	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10846205	2R_10846205_DEL [dm3] 2R_14958700_DEL [dm6]	TAGGTAAGCTATT...	T	4.641e^-7	0.004	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10846337	2R_10846337_SNP [dm3] 2R_14958832_SNP [dm6]	C	T	4.641e^-7	0.004	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10846649	2R_10846649_SNP [dm3] 2R_14959144_SNP [dm6]	C	G	4.641e^-7	0.004	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	10846650	2R_10846650_SNP [dm3] 2R_14959145_SNP [dm6]	C	T	4.641e^-7	0.004	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	20383290	2R_20383290_SNP [dm3] 2R_24495767_SNP [dm6]	G	A	4.721e^-7	0.004	SYNONYMOUS_CODING Crtp	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13023178	2L_13023178_SNP [dm3] 2L_13023178_SNP [dm6]	C	A	4.930e^-7	0.004	UTR_3_PRIME CG9932
2L	3369583	2L_3369583_SNP [dm3] 2L_3369583_SNP [dm6]	G	A	5.088e^-7	0.004	UPSTREAM CG34394 INTRON CG34394
2L	13050111	2L_13050111_SNP [dm3] 2L_13050111_SNP [dm6]	A	T	5.158e^-7	0.004	INTRON CG9932
3R	7363066	3R_7363066_SNP [dm3] 3R_11537344_SNP [dm6]	T	C	5.167e^-7	0.004	INTRON dpr4
2R	20949577	2R_20949577_SNP [dm3] 2R_25062054_SNP [dm6]	C	A	5.167e^-7	0.004	UTR_5_PRIME gsb	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
X	2414156	X_2414156_SNP [dm3] X_2520123_SNP [dm6]	C	T	5.263e^-7	0.004	INTRON trol
2L	10272247	2L_10272247_SNP [dm3] 2L_10272247_SNP [dm6]	T	C	5.328e^-7	0.004	UTR_5_PRIME trk DOWNSTREAM Utx & 1 other
3L	6278128	3L_6278128_SNP [dm3] 3L_6285028_SNP [dm6]	A	T	5.359e^-7	0.004	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13913601	2L_13913601_SNP [dm3] 2L_13913601_SNP [dm6]	G	A	5.429e^-7	0.004	DOWNSTREAM Acyp INTERGENIC	TF binding site mE1_TFBS_cad
X	4288896	X_4288896_SNP [dm3] X_4394863_SNP [dm6]	A	G	5.463e^-7	0.004	UPSTREAM CR32773 INTRON CR32773
3L	9987540	3L_9987540_SNP [dm3] 3L_9994440_SNP [dm6]	C	A	5.469e^-7	0.004	INTRON dpr6
3L	9987931	3L_9987931_SNP [dm3] 3L_9994831_SNP [dm6]	T	A	5.469e^-7	0.004	INTRON dpr6
2R	10846280	2R_10846280_SNP [dm3] 2R_14958775_SNP [dm6]	C	T	5.597e^-7	0.004	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	4290924	X_4290924_SNP [dm3] X_4396891_SNP [dm6]	G	T	5.627e^-7	0.004	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4290956	X_4290956_SNP [dm3] X_4396923_SNP [dm6]	A	C	5.627e^-7	0.004	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5433365	2R_5433365_SNP [dm3] 2R_9545860_SNP [dm6]	C	T	5.665e^-7	0.004	SYNONYMOUS_CODING CG1888	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2R	5434759	2R_5434759_SNP [dm3] 2R_9547254_SNP [dm6]	C	G	5.665e^-7	0.004	UTR_5_PRIME CG1888 UPSTREAM CG1888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	5419262	3L_5419262_SNP [dm3] 3L_5426162_SNP [dm6]	C	A	5.665e^-7	0.004	INTRON CG34391
2R	10846198	2R_10846198_SNP [dm3] 2R_14958693_SNP [dm6]	T	A	5.734e^-7	0.004	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10846199	2R_10846199_DEL [dm3] 2R_14958694_DEL [dm6]	TC	T	5.734e^-7	0.004	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15287532	2L_15287532_SNP [dm3] 2L_15287532_SNP [dm6]	T	C	5.822e^-7	0.004	INTERGENIC
2L	15287541	2L_15287541_SNP [dm3] 2L_15287541_SNP [dm6]	G	T	5.822e^-7	0.004	INTERGENIC
2R	10846172	2R_10846172_SNP [dm3] 2R_14958667_SNP [dm6]	T	A	5.839e^-7	0.004	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10846174	2R_10846174_SNP [dm3] 2R_14958669_SNP [dm6]	A	C	5.839e^-7	0.004	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20549577	X_20549577_SNP [dm3] X_20678550_SNP [dm6]	C	T	5.904e^-7	0.004	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	10219666	3L_10219666_SNP [dm3] 3L_10226566_SNP [dm6]	T	A	5.926e^-7	0.004	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	20523249	2R_20523249_SNP [dm3] 2R_24635726_SNP [dm6]	C	T	5.945e^-7	0.004	INTRON CG13594
2R	776190	2R_776190_SNP [dm3] 2R_4888685_SNP [dm6]	G	A	5.950e^-7	0.004	INTERGENIC
2R	3442639	2R_3442639_SNP [dm3] 2R_7555134_SNP [dm6]	G	A	5.973e^-7	0.004	NON_SYNONYMOUS_CODING Corin
3R	15082111	3R_15082111_SNP [dm3] 3R_19256389_SNP [dm6]	C	A	6.232e^-7	0.005	UPSTREAM CG14280 INTERGENIC
2R	10846688	2R_10846688_DEL [dm3] 2R_14959183_DEL [dm6]	TTGGGTAATGGCAT...	T	6.464e^-7	0.005	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	5386036	X_5386036_SNP [dm3] X_5492003_SNP [dm6]	G	A	6.599e^-7	0.005	SYNONYMOUS_CODING SPR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13012998	2L_13012998_SNP [dm3] 2L_13012998_SNP [dm6]	C	T	6.797e^-7	0.005	UTR_3_PRIME Tor DOWNSTREAM CG9934	TF binding site mE1_TFBS_cad
2L	13013042	2L_13013042_SNP [dm3] 2L_13013042_SNP [dm6]	G	A	6.797e^-7	0.005	UTR_3_PRIME Tor DOWNSTREAM CG9934	TF binding site mE1_TFBS_cad
2L	13015533	2L_13015533_SNP [dm3] 2L_13015533_SNP [dm6]	A	C	6.797e^-7	0.005	INTRON CG9934
X	4717496	X_4717496_SNP [dm3] X_4823463_SNP [dm6]	G	C	6.916e^-7	0.005	INTERGENIC
2R	5436330	2R_5436330_SNP [dm3] 2R_9548825_SNP [dm6]	G	C	6.949e^-7	0.005	UPSTREAM CG1888 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	5436419	2R_5436419_SNP [dm3] 2R_9548914_SNP [dm6]	G	A	6.949e^-7	0.005	UPSTREAM CG1888 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	899496	3L_899496_SNP [dm3] 3L_899496_SNP [dm6]	C	T	6.979e^-7	0.005	DOWNSTREAM CG34057 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	26597000	3R_26597000_SNP [dm3] 3R_30771278_SNP [dm6]	T	A	7.075e^-7	0.005	INTRON zfh1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12554272	2R_12554272_SNP [dm3] 2R_16666767_SNP [dm6]	A	G	7.078e^-7	0.005	INTRON Picot
2R	10846655	2R_10846655_SNP [dm3] 2R_14959150_SNP [dm6]	A	C	7.084e^-7	0.005	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	10846161	2R_10846161_INS [dm3] 2R_14958656_INS [dm6]	T	TT	7.213e^-7	0.005	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7457055	3L_7457055_SNP [dm3] 3L_7463955_SNP [dm6]	C	T	7.249e^-7	0.005	INTERGENIC
3R	17562898	3R_17562898_SNP [dm3] 3R_21737176_SNP [dm6]	T	C	7.396e^-7	0.005	UPSTREAM Sfp93F & 1 other INTRON CG42870
3L	6278132	3L_6278132_SNP [dm3] 3L_6285032_SNP [dm6]	C	T	7.403e^-7	0.005	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19335338	2R_19335338_SNP [dm3] 2R_23447815_SNP [dm6]	T	G	7.809e^-7	0.005	INTRON CG43795	TF binding site mE1_TFBS_chinmo
2R	10846195	2R_10846195_SNP [dm3] 2R_14958690_SNP [dm6]	C	A	7.818e^-7	0.005	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10149379	2L_10149379_SNP [dm3] 2L_10149379_SNP [dm6]	A	T	7.990e^-7	0.006	INTRON CG44153 & 1 other
3L	11421447	3L_11421447_SNP [dm3] 3L_11428347_SNP [dm6]	C	G	8.073e^-7	0.006	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	18191666	X_18191666_INS [dm3] X_18297633_INS [dm6]	T	TCCAGCCTCAGT...	8.225e^-7	0.006	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	15082117	3R_15082117_SNP [dm3] 3R_19256395_SNP [dm6]	C	T	8.300e^-7	0.006	UPSTREAM CG14280 INTERGENIC
X	20362460	X_20362460_SNP [dm3] X_20491433_SNP [dm6]	C	A	8.338e^-7	0.006	UPSTREAM RhoGAP19D INTRON RhoGAP19D
3L	13723103	3L_13723103_SNP [dm3] 3L_13730003_SNP [dm6]	A	G	8.402e^-7	0.006	INTRON bru-3
2L	13014778	2L_13014778_SNP [dm3] 2L_13014778_SNP [dm6]	C	A	8.406e^-7	0.006	INTRON CG9934
3L	1075467	3L_1075467_SNP [dm3] 3L_1075467_SNP [dm6]	C	T	8.615e^-7	0.006	INTRON bab1
2R	3440559	2R_3440559_INS [dm3] 2R_7553054_INS [dm6]	C	CGC	8.623e^-7	0.006	INTRON Corin
2L	17374690	2L_17374690_SNP [dm3] 2L_17374690_SNP [dm6]	T	C	8.633e^-7	0.006	SYNONYMOUS_CODING Lrch	TF binding site mE1_TFBS_cad
2R	20219695	2R_20219695_SNP [dm3] 2R_24332172_SNP [dm6]	G	C	9.096e^-7	0.006	UTR_3_PRIME slbo	TF binding site mE1_TFBS_cad
3R	7783311	3R_7783311_SNP [dm3] 3R_11957589_SNP [dm6]	A	T	9.251e^-7	0.006	UPSTREAM Hsp70Ab INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	12998554	2L_12998554_SNP [dm3] 2L_12998554_SNP [dm6]	G	A	9.321e^-7	0.006	INTRON CG12404
X	9983383	X_9983383_SNP [dm3] X_10089350_SNP [dm6]	A	T	9.334e^-7	0.006	INTRON RhoU	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	4292162	X_4292162_SNP [dm3] X_4398129_SNP [dm6]	A	G	9.376e^-7	0.006	INTRON CR32773
X	4292164	X_4292164_INS [dm3] X_4398131_INS [dm6]	A	AA	9.376e^-7	0.006	INTRON CR32773
X	4292194	X_4292194_SNP [dm3] X_4398161_SNP [dm6]	C	T	9.376e^-7	0.006	INTRON CR32773
3R	17564106	3R_17564106_SNP [dm3] 3R_21738384_SNP [dm6]	C	T	9.582e^-7	0.006	UTR_3_PRIME CG34034
2L	11346434	2L_11346434_SNP [dm3] 2L_11346434_SNP [dm6]	G	A	9.622e^-7	0.006	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11347778	2L_11347778_SNP [dm3] 2L_11347778_SNP [dm6]	G	A	9.622e^-7	0.006	INTERGENIC
2L	14601830	2L_14601830_SNP [dm3] 2L_14601830_SNP [dm6]	A	G	9.622e^-7	0.006	INTRON osp
2L	14601838	2L_14601838_SNP [dm3] 2L_14601838_SNP [dm6]	T	C	9.622e^-7	0.006	INTRON osp
2R	10846190	2R_10846190_SNP [dm3] 2R_14958685_SNP [dm6]	T	A	9.653e^-7	0.006	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13058821	2L_13058821_DEL [dm3] 2L_13058821_DEL [dm6]	AAT	A	9.822e^-7	0.006	INTRON CG9932
3L	11421986	3L_11421986_SNP [dm3] 3L_11428886_SNP [dm6]	G	A	9.871e^-7	0.006	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	14490881	X_14490881_DEL [dm3] X_14596848_DEL [dm6]	CC	C	9.876e^-7	0.006	INTRON CG9413
2R	17365219	2R_17365219_SNP [dm3] 2R_21477714_SNP [dm6]	A	C	9.953e^-7	0.006	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12170885	3L_12170885_SNP [dm3] 3L_12177785_SNP [dm6]	G	T	1.037e^-6	0.007	INTRON CAH2
X	19660402	X_19660402_SNP [dm3] X_19766369_SNP [dm6]	C	T	1.071e^-6	0.007	DOWNSTREAM vfl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	12006443	3R_12006443_SNP [dm3] 3R_16180721_SNP [dm6]	C	T	1.076e^-6	0.007	UPSTREAM CG8927 DOWNSTREAM CG8925 INTERGENIC
3L	4391396	3L_4391396_SNP [dm3] 3L_4391396_SNP [dm6]	T	A	1.119e^-6	0.007	INTRON slow	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13021718	2L_13021718_SNP [dm3] 2L_13021718_SNP [dm6]	T	C	1.123e^-6	0.007	UPSTREAM A16 DOWNSTREAM CG9932 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	13022520	2L_13022520_DEL [dm3] 2L_13022520_DEL [dm6]	TTTTAAAT	T	1.123e^-6	0.007	UTR_3_PRIME CG9932 DOWNSTREAM CG9932
X	10476961	X_10476961_SNP [dm3] X_10582928_SNP [dm6]	A	C	1.141e^-6	0.007	INTRON spri	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4489834	2L_4489834_SNP [dm3] 2L_4489834_SNP [dm6]	G	A	1.148e^-6	0.007	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	19335326	2R_19335326_SNP [dm3] 2R_23447803_SNP [dm6]	G	C	1.151e^-6	0.007	INTRON CG43795	TF binding site mE1_TFBS_chinmo
2L	11347151	2L_11347151_SNP [dm3] 2L_11347151_SNP [dm6]	A	G	1.178e^-6	0.007	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6265606	X_6265606_SNP [dm3] X_6371573_SNP [dm6]	A	C	1.179e^-6	0.007	UTR_3_PRIME PpV UPSTREAM CR44816 DOWNSTREAM Marf	TF binding site mE1_TFBS_sens
2L	19433785	2L_19433785_SNP [dm3] 2L_19433785_SNP [dm6]	C	A	1.196e^-6	0.007	INTRON Rab9
3R	22901093	3R_22901093_SNP [dm3] 3R_27075371_SNP [dm6]	G	T	1.229e^-6	0.007	UPSTREAM CG14257 INTERGENIC
3L	11421422	3L_11421422_SNP [dm3] 3L_11428322_SNP [dm6]	T	A	1.242e^-6	0.007	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	11064542	2R_11064542_SNP [dm3] 2R_15177037_SNP [dm6]	T	G	1.290e^-6	0.008	INTRON igl
3L	2140381	3L_2140381_SNP [dm3] 3L_2140381_SNP [dm6]	T	G	1.293e^-6	0.008	SYNONYMOUS_CODING zormin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19522665	2R_19522665_SNP [dm3] 2R_23635142_SNP [dm6]	C	T	1.300e^-6	0.008	INTRON retn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1451937	3L_1451937_SNP [dm3] 3L_1451937_SNP [dm6]	G	C	1.324e^-6	0.008	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
X	20362577	X_20362577_SNP [dm3] X_20491550_SNP [dm6]	T	G	1.328e^-6	0.008	UPSTREAM RhoGAP19D INTRON RhoGAP19D
X	5386033	X_5386033_SNP [dm3] X_5492000_SNP [dm6]	T	C	1.339e^-6	0.008	SYNONYMOUS_CODING SPR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6546540	2R_6546540_SNP [dm3] 2R_10659035_SNP [dm6]	T	A	1.340e^-6	0.008	INTERGENIC
2L	3682287	2L_3682287_SNP [dm3] 2L_3682287_SNP [dm6]	G	T	1.352e^-6	0.008	INTRON CG34340	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	19660379	X_19660379_SNP [dm3] X_19766346_SNP [dm6]	T	A	1.362e^-6	0.008	DOWNSTREAM vfl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	13021704	2L_13021704_SNP [dm3] 2L_13021704_SNP [dm6]	A	G	1.377e^-6	0.008	UPSTREAM A16 DOWNSTREAM CG9932 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	18838645	3R_18838645_SNP [dm3] 3R_23012923_SNP [dm6]	A	C	1.380e^-6	0.008	UPSTREAM CR44225 INTRON CG6688	TF binding site mE1_TFBS_cad
3L	7258353	3L_7258353_INS [dm3] 3L_7265253_INS [dm6]	T	TT	1.407e^-6	0.008	DOWNSTREAM unc-13-4A INTERGENIC
2L	16868626	2L_16868626_SNP [dm3] 2L_16868626_SNP [dm6]	T	A	1.421e^-6	0.008	UPSTREAM CR31781 INTERGENIC
2R	19264984	2R_19264984_SNP [dm3] 2R_23377461_SNP [dm6]	C	A	1.436e^-6	0.008	UPSTREAM Golgin245 DOWNSTREAM CG13551 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	2400015	2R_2400015_SNP [dm3] 2R_6512510_SNP [dm6]	T	G	1.449e^-6	0.008	INTRON jing	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
3R	22900995	3R_22900995_SNP [dm3] 3R_27075273_SNP [dm6]	A	G	1.475e^-6	0.008	UPSTREAM CG14257 INTERGENIC
3L	11421996	3L_11421996_SNP [dm3] 3L_11428896_SNP [dm6]	T	A	1.477e^-6	0.008	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	19666573	X_19666573_INS [dm3] X_19772540_INS [dm6]	T	TATACATAC	1.490e^-6	0.008	INTRON vfl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6295882	2L_6295882_SNP [dm3] 2L_6295882_SNP [dm6]	T	A	1.491e^-6	0.008	INTRON Ddr
3L	6442995	3L_6442995_SNP [dm3] 3L_6449895_SNP [dm6]	A	G	1.492e^-6	0.008	INTRON CG42747
3L	10567993	3L_10567993_SNP [dm3] 3L_10574893_SNP [dm6]	G	T	1.513e^-6	0.009	INTRON A2bp1
2L	1342009	2L_1342009_SNP [dm3] 2L_1342009_SNP [dm6]	G	A	1.525e^-6	0.009	INTRON CG33923
2R	17365256	2R_17365256_SNP [dm3] 2R_21477751_SNP [dm6]	G	A	1.541e^-6	0.009	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19735111	3R_19735111_SNP [dm3] 3R_23909389_SNP [dm6]	A	G	1.550e^-6	0.009	INTRON sba
2R	19749414	2R_19749414_SNP [dm3] 2R_23861891_SNP [dm6]	T	C	1.570e^-6	0.009	UTR_5_PRIME TBPH INTRON TBPH	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	21863574	X_21863574_SNP [dm3] X_22461738_SNP [dm6]	A	G	1.577e^-6	0.009	INTRON CG14619	TF binding site mE1_TFBS_HSA
X	4294165	X_4294165_SNP [dm3] X_4400132_SNP [dm6]	T	A	1.578e^-6	0.009	INTRON CR32773
2L	2309321	2L_2309321_SNP [dm3] 2L_2309321_SNP [dm6]	G	A	1.604e^-6	0.009	DOWNSTREAM CG16995 INTRON CG9967	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15552812	2R_15552812_SNP [dm3] 2R_19665307_SNP [dm6]	A	G	1.645e^-6	0.009	UTR_3_PRIME hrg INTRON hrg	TF binding site BDTNP1_TFBS_dl
3L	10220337	3L_10220337_SNP [dm3] 3L_10227237_SNP [dm6]	C	T	1.650e^-6	0.009	INTERGENIC
2L	9249354	2L_9249354_SNP [dm3] 2L_9249354_SNP [dm6]	T	C	1.650e^-6	0.009	UTR_3_PRIME tai DOWNSTREAM aust	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	3682235	2L_3682235_SNP [dm3] 2L_3682235_SNP [dm6]	T	A	1.694e^-6	0.009	INTRON CG34340	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10564945	2L_10564945_INS [dm3] 2L_10564945_INS [dm6]	C	CC	1.738e^-6	0.009	INTRON Trim9
X	9197480	X_9197480_DEL [dm3] X_9303447_DEL [dm6]	TT	T	1.788e^-6	0.01	UTR_3_PRIME lz
3L	12617852	3L_12617852_SNP [dm3] 3L_12624752_SNP [dm6]	A	C	1.809e^-6	0.01	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6280765	2L_6280765_SNP [dm3] 2L_6280765_SNP [dm6]	G	T	1.814e^-6	0.01	INTRON Ddr
X	8104781	X_8104781_INS [dm3] X_8210748_INS [dm6]	A	AAGGAGCAACGAGTGCA...	1.872e^-6	0.01	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	8106310	X_8106310_SNP [dm3] X_8212277_SNP [dm6]	T	A	1.872e^-6	0.01	INTRON sdt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	8111502	X_8111502_SNP [dm3] X_8217469_SNP [dm6]	G	A	1.872e^-6	0.01	INTRON sdt	TF binding site BDTNP1_TFBS_dl
X	8111509	X_8111509_SNP [dm3] X_8217476_SNP [dm6]	C	A	1.872e^-6	0.01	INTRON sdt	TF binding site BDTNP1_TFBS_dl
3L	9984541	3L_9984541_SNP [dm3] 3L_9991441_SNP [dm6]	G	A	1.876e^-6	0.01	INTRON dpr6
2R	14974178	2R_14974178_INS [dm3] 2R_19086673_INS [dm6]	C	CCCACAC	1.952e^-6	0.01	INTRON 5-HT1A
2R	19391199	2R_19391199_INS [dm3] 2R_23503676_INS [dm6]	T	TGAGTCATT	1.963e^-6	0.01	UTR_3_PRIME CG13559
2L	1341990	2L_1341990_DEL [dm3] 2L_1341990_DEL [dm6]	AGGGTATTAAGTACTTAA...	A	1.967e^-6	0.01	SPLICE_SITE_REGION CG33923 INTRON CG33923
2R	14713766	2R_14713766_SNP [dm3] 2R_18826261_SNP [dm6]	G	A	1.979e^-6	0.01	UPSTREAM CG15097 INTRON CG15097
2R	14715161	2R_14715161_MNP [dm3] 2R_18827656_MNP [dm6]	TTC	GAA	1.979e^-6	0.01	INTRON CG15097
X	12050236	X_12050236_SNP [dm3] X_12156203_SNP [dm6]	T	G	1.979e^-6	0.01	INTRON Ten-a
2L	15136544	2L_15136544_SNP [dm3] 2L_15136544_SNP [dm6]	T	C	2.038e^-6	0.011	INTERGENIC
3L	4671158	3L_4671158_SNP [dm3] 3L_4671158_SNP [dm6]	C	T	2.060e^-6	0.011	INTRON axo
2L	2553493	2L_2553493_SNP [dm3] 2L_2553493_SNP [dm6]	T	A	2.097e^-6	0.011	UPSTREAM CG3515 INTERGENIC
3L	9984609	3L_9984609_SNP [dm3] 3L_9991509_SNP [dm6]	T	C	2.126e^-6	0.011	INTRON dpr6
2R	20512776	2R_20512776_SNP [dm3] 2R_24625253_SNP [dm6]	T	C	2.198e^-6	0.011	UTR_5_PRIME CG13594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11193478	2L_11193478_SNP [dm3] 2L_11193478_SNP [dm6]	G	T	2.199e^-6	0.011	INTRON Ca-beta
2R	19264470	2R_19264470_SNP [dm3] 2R_23376947_SNP [dm6]	T	C	2.207e^-6	0.011	UTR_5_PRIME Golgin245 DOWNSTREAM CG13551	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	20362623	X_20362623_SNP [dm3] X_20491596_SNP [dm6]	T	C	2.219e^-6	0.011	UPSTREAM RhoGAP19D INTRON RhoGAP19D
2L	15999944	2L_15999944_SNP [dm3] 2L_15999944_SNP [dm6]	A	G	2.230e^-6	0.011	UPSTREAM beat-Ic INTERGENIC
2L	5599711	2L_5599711_DEL [dm3] 2L_5599711_DEL [dm6]	AC	T	2.237e^-6	0.011	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9736785	3L_9736785_SNP [dm3] 3L_9743685_SNP [dm6]	T	A	2.257e^-6	0.011	UTR_5_PRIME CG42268 INTRON CG42268 & 1 other
2R	2170140	2R_2170140_SNP [dm3] 2R_6282635_SNP [dm6]	T	A	2.280e^-6	0.011	INTERGENIC	transposable element FlyBase
3L	15340306	3L_15340306_SNP [dm3] 3L_15347206_SNP [dm6]	T	C	2.292e^-6	0.011	INTERGENIC
3L	2483529	3L_2483529_SNP [dm3] 3L_2483529_SNP [dm6]	G	A	2.292e^-6	0.011	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2483531	3L_2483531_SNP [dm3] 3L_2483531_SNP [dm6]	C	A	2.292e^-6	0.011	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12098928	X_12098928_SNP [dm3] X_12204895_SNP [dm6]	C	T	2.298e^-6	0.011	INTRON Ten-a
X	12098932	X_12098932_SNP [dm3] X_12204899_SNP [dm6]	T	A	2.298e^-6	0.011	INTRON Ten-a
2R	223036	2R_223036_INS [dm3] 2R_4335531_INS [dm6]	G	GCTAG	2.316e^-6	0.012	INTRON Gprk1
3L	6156331	3L_6156331_SNP [dm3] 3L_6163231_SNP [dm6]	C	A	2.355e^-6	0.012	SYNONYMOUS_CODING CG13296 UPSTREAM CR45744	TF binding site mE1_TFBS_cad
2L	11351807	2L_11351807_DEL [dm3] 2L_11351807_DEL [dm6]	TAATTT	T	2.358e^-6	0.012	INTERGENIC	regulatory region REDfly_CRMs
2L	11350655	2L_11350655_DEL [dm3] 2L_11350655_DEL [dm6]	TAGT	T	2.360e^-6	0.012	INTERGENIC	regulatory region REDfly_CRMs
2R	9417977	2R_9417977_SNP [dm3] 2R_13530472_SNP [dm6]	A	G	2.373e^-6	0.012	UPSTREAM Vmat INTRON Vmat
2R	18455289	2R_18455289_SNP [dm3] 2R_22567784_SNP [dm6]	T	C	2.413e^-6	0.012	INTRON dnr1
2R	15703414	2R_15703414_SNP [dm3] 2R_19815909_SNP [dm6]	A	C	2.442e^-6	0.012	NON_SYNONYMOUS_CODING Obp56h	TF binding site mE1_TFBS_sens
3L	4117120	3L_4117120_SNP [dm3] 3L_4117120_SNP [dm6]	A	G	2.442e^-6	0.012	INTRON Chd64
3L	9596445	3L_9596445_SNP [dm3] 3L_9603345_SNP [dm6]	A	G	2.443e^-6	0.012	UPSTREAM CG3280 DOWNSTREAM CG3306 INTERGENIC
3L	9597106	3L_9597106_SNP [dm3] 3L_9604006_SNP [dm6]	C	G	2.443e^-6	0.012	INTRON CG3280
2L	2695222	2L_2695222_SNP [dm3] 2L_2695222_SNP [dm6]	G	A	2.452e^-6	0.012	DOWNSTREAM CG15398 INTRON CG31690
3L	9984717	3L_9984717_SNP [dm3] 3L_9991617_SNP [dm6]	C	T	2.490e^-6	0.012	INTRON dpr6
2L	13913504	2L_13913504_SNP [dm3] 2L_13913504_SNP [dm6]	T	C	2.503e^-6	0.012	DOWNSTREAM Acyp INTERGENIC	TF binding site mE1_TFBS_cad
X	13917461	X_13917461_SNP [dm3] X_14023428_SNP [dm6]	A	G	2.509e^-6	0.012	INTERGENIC
X	13917466	X_13917466_SNP [dm3] X_14023433_SNP [dm6]	T	A	2.509e^-6	0.012	INTERGENIC
3L	9984352	3L_9984352_SNP [dm3] 3L_9991252_SNP [dm6]	G	A	2.513e^-6	0.012	INTRON dpr6
3L	12641341	3L_12641341_SNP [dm3] 3L_12648241_SNP [dm6]	T	G	2.595e^-6	0.012	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd
X	19661562	X_19661562_INS [dm3] X_19767529_INS [dm6]	A	ATA	2.618e^-6	0.012	UTR_3_PRIME vfl	TF binding site BDTNP1_TFBS_dl
3L	10355257	3L_10355257_DEL [dm3] 3L_10362157_DEL [dm6]	AC	A	2.627e^-6	0.012	EXON CR44327	TF binding site BDTNP1_TFBS_dl
2R	6978838	2R_6978838_SNP [dm3] 2R_11091333_SNP [dm6]	C	A	2.634e^-6	0.012	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	4695097	2L_4695097_SNP [dm3] 2L_4695097_SNP [dm6]	G	C	2.645e^-6	0.012	INTRON CG34351
3R	27166882	3R_27166882_INS [dm3] 3R_31341160_INS [dm6]	C	CGC	2.668e^-6	0.013	INTRON CG34347
X	4244328	X_4244328_SNP [dm3] X_4350295_SNP [dm6]	C	G	2.695e^-6	0.013	INTRON norpA
3L	9983974	3L_9983974_SNP [dm3] 3L_9990874_SNP [dm6]	A	G	2.699e^-6	0.013	INTRON dpr6
2R	2532537	2R_2532537_SNP [dm3] 2R_6645032_SNP [dm6]	G	A	2.700e^-6	0.013	UTR_5_PRIME Fmo-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4698361	2L_4698361_DEL [dm3] 2L_4698361_DEL [dm6]	AA	A	2.714e^-6	0.013	INTRON CG34351
2L	15999899	2L_15999899_SNP [dm3] 2L_15999899_SNP [dm6]	C	G	2.727e^-6	0.013	UPSTREAM beat-Ic INTERGENIC
2R	8888052	2R_8888052_SNP [dm3] 2R_13000547_SNP [dm6]	T	C	2.778e^-6	0.013	INTRON Su_z_2
X	14245282	X_14245282_SNP [dm3] X_14351249_SNP [dm6]	T	C	2.788e^-6	0.013	INTRON dpr8
2R	10235368	2R_10235368_SNP [dm3] 2R_14347863_SNP [dm6]	G	T	2.813e^-6	0.013	INTRON Shroom
3L	9483943	3L_9483943_SNP [dm3] 3L_9490843_SNP [dm6]	G	A	2.820e^-6	0.013	INTRON CG32037	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	12998733	2L_12998733_SNP [dm3] 2L_12998733_SNP [dm6]	C	T	2.856e^-6	0.013	INTRON CG12404
2R	17321772	2R_17321772_SNP [dm3] 2R_21434267_SNP [dm6]	A	G	2.879e^-6	0.013	INTRON Sdc
2R	8549035	2R_8549035_SNP [dm3] 2R_12661530_SNP [dm6]	G	A	2.880e^-6	0.013	UTR_5_PRIME nemy INTRON nemy
X	5929622	X_5929622_SNP [dm3] X_6035589_SNP [dm6]	A	G	2.888e^-6	0.013	DOWNSTREAM rux INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	14247620	X_14247620_SNP [dm3] X_14353587_SNP [dm6]	C	A	2.907e^-6	0.013	INTRON dpr8
X	14247854	X_14247854_SNP [dm3] X_14353821_SNP [dm6]	A	G	2.907e^-6	0.013	INTRON dpr8
X	14247890	X_14247890_SNP [dm3] X_14353857_SNP [dm6]	T	C	2.907e^-6	0.013	INTRON dpr8
X	14247909	X_14247909_SNP [dm3] X_14353876_SNP [dm6]	T	A	2.907e^-6	0.013	INTRON dpr8
X	14247986	X_14247986_SNP [dm3] X_14353953_SNP [dm6]	A	T	2.907e^-6	0.013	INTRON dpr8
3L	12149761	3L_12149761_SNP [dm3] 3L_12156661_SNP [dm6]	A	T	2.929e^-6	0.013	UTR_3_PRIME Nrx-IV DOWNSTREAM CG9760
3L	9985842	3L_9985842_SNP [dm3] 3L_9992742_SNP [dm6]	T	A	3.024e^-6	0.014	INTRON dpr6
2L	6277800	2L_6277800_SNP [dm3] 2L_6277800_SNP [dm6]	C	T	3.037e^-6	0.014	INTRON Ddr
X	13920315	X_13920315_SNP [dm3] X_14026282_SNP [dm6]	C	T	3.129e^-6	0.014	UPSTREAM tRNA:S7:12Ed INTERGENIC	TF binding site BDTNP1_TFBS_hb
X	13920316	X_13920316_SNP [dm3] X_14026283_SNP [dm6]	C	T	3.129e^-6	0.014	UPSTREAM tRNA:S7:12Ed INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	17356187	2R_17356187_SNP [dm3] 2R_21468682_SNP [dm6]	A	G	3.134e^-6	0.014	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	798831	2R_798831_SNP [dm3] 2R_4911326_SNP [dm6]	G	T	3.150e^-6	0.014	INTERGENIC	transposable element FlyBase
3L	17683106	3L_17683106_SNP [dm3] 3L_17690006_SNP [dm6]	C	G	3.199e^-6	0.014	UPSTREAM Ccn INTERGENIC
3R	26448434	3R_26448434_SNP [dm3] 3R_30622712_SNP [dm6]	C	A	3.219e^-6	0.014	UPSTREAM CG44954 INTERGENIC
2R	15552569	2R_15552569_SNP [dm3] 2R_19665064_SNP [dm6]	A	T	3.240e^-6	0.014	DOWNSTREAM hrg INTRON hrg	TF binding site BDTNP1_TFBS_dl
3L	6278160	3L_6278160_SNP [dm3] 3L_6285060_SNP [dm6]	C	T	3.257e^-6	0.014	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6278162	3L_6278162_SNP [dm3] 3L_6285062_SNP [dm6]	A	C	3.257e^-6	0.014	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4244318	X_4244318_DEL [dm3] X_4350285_DEL [dm6]	ATA	A	3.267e^-6	0.014	INTRON norpA
2L	2561819	2L_2561819_SNP [dm3] 2L_2561819_SNP [dm6]	G	T	3.304e^-6	0.014	DOWNSTREAM Cyp309a1 INTERGENIC
3R	12006695	3R_12006695_SNP [dm3] 3R_16180973_SNP [dm6]	T	A	3.327e^-6	0.014	UPSTREAM CG8927 DOWNSTREAM CG8925 INTERGENIC	TF binding site mE1_TFBS_sens
X	2774875	X_2774875_SNP [dm3] X_2880842_SNP [dm6]	C	T	3.338e^-6	0.014	INTRON kirre
2L	12760234	2L_12760234_SNP [dm3] 2L_12760234_SNP [dm6]	A	C	3.417e^-6	0.015	DOWNSTREAM CG15483 INTERGENIC
2L	13910053	2L_13910053_SNP [dm3] 2L_13910053_SNP [dm6]	G	A	3.477e^-6	0.015	NON_SYNONYMOUS_CODING Ance-2 DOWNSTREAM Ance	TF binding site mE1_TFBS_cad
X	20362602	X_20362602_SNP [dm3] X_20491575_SNP [dm6]	G	T	3.493e^-6	0.015	UPSTREAM RhoGAP19D INTRON RhoGAP19D
3L	14618136	3L_14618136_SNP [dm3] 3L_14625036_SNP [dm6]	C	A	3.516e^-6	0.015	INTRON CG9628	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10539466	3L_10539466_INS [dm3] 3L_10546366_INS [dm6]	C	CAGATACAGATGC...	3.517e^-6	0.015	INTRON A2bp1
3L	6001865	3L_6001865_SNP [dm3] 3L_6008765_SNP [dm6]	C	A	3.518e^-6	0.015	DOWNSTREAM alphaKap4 INTRON PVRAP
3L	6001867	3L_6001867_SNP [dm3] 3L_6008767_SNP [dm6]	A	G	3.518e^-6	0.015	DOWNSTREAM alphaKap4 INTRON PVRAP
3L	6468056	3L_6468056_SNP [dm3] 3L_6474956_SNP [dm6]	A	G	3.518e^-6	0.015	INTRON CG42747
X	20758204	X_20758204_SNP [dm3] X_20887177_SNP [dm6]	C	G	3.518e^-6	0.015	INTRON shakB
2L	6825580	2L_6825580_SNP [dm3] 2L_6825580_SNP [dm6]	C	T	3.558e^-6	0.015	INTRON sens-2
2R	16963242	2R_16963242_DEL [dm3] 2R_21075737_DEL [dm6]	AAAGTTTTACCACTCACATA...	A	3.564e^-6	0.015	UPSTREAM Treh INTRON Treh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9595391	3L_9595391_SNP [dm3] 3L_9602291_SNP [dm6]	T	C	3.580e^-6	0.015	SYNONYMOUS_CODING CG3306 UPSTREAM CG3088
3L	9595437	3L_9595437_SNP [dm3] 3L_9602337_SNP [dm6]	C	T	3.580e^-6	0.015	NON_SYNONYMOUS_CODING CG3306
3L	14784033	3L_14784033_SNP [dm3] 3L_14790933_SNP [dm6]	C	A	3.598e^-6	0.015	UPSTREAM CG9425 INTRON CG9425	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn
3L	14784160	3L_14784160_SNP [dm3] 3L_14791060_SNP [dm6]	A	C	3.598e^-6	0.015	UPSTREAM CG9425 INTRON CG9425	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	12175140	X_12175140_SNP [dm3] X_12281107_SNP [dm6]	G	A	3.656e^-6	0.015	INTRON Ten-a
X	11802335	X_11802335_SNP [dm3] X_11908302_SNP [dm6]	A	T	3.667e^-6	0.015	UTR_3_PRIME pot	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	12031067	3L_12031067_DEL [dm3] 3L_12037967_DEL [dm6]	AC	A	3.691e^-6	0.015	INTRON rols
3L	9579486	3L_9579486_SNP [dm3] 3L_9586386_SNP [dm6]	A	G	3.777e^-6	0.016	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2810558	3L_2810558_SNP [dm3] 3L_2810558_SNP [dm6]	A	G	3.789e^-6	0.016	INTRON CG43444	TF binding site mE1_TFBS_inv
2R	10843039	2R_10843039_SNP [dm3] 2R_14955534_SNP [dm6]	C	A	3.792e^-6	0.016	INTRON aPKC	TF binding site mE1_TFBS_HSA
2L	2131343	2L_2131343_SNP [dm3] 2L_2131343_SNP [dm6]	T	C	3.811e^-6	0.016	INTRON GlyP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	10219864	3L_10219864_SNP [dm3] 3L_10226764_SNP [dm6]	T	G	3.815e^-6	0.016	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10220227	3L_10220227_SNP [dm3] 3L_10227127_SNP [dm6]	C	T	3.815e^-6	0.016	INTERGENIC
2L	12497597	2L_12497597_SNP [dm3] 2L_12497597_SNP [dm6]	C	A	3.847e^-6	0.016	UPSTREAM t-cup INTRON bun
3R	25806344	3R_25806344_SNP [dm3] 3R_29980622_SNP [dm6]	T	C	3.864e^-6	0.016	INTERGENIC
X	12609128	X_12609128_SNP [dm3] X_12715095_SNP [dm6]	T	C	3.952e^-6	0.016	SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_dl
3L	14618370	3L_14618370_SNP [dm3] 3L_14625270_SNP [dm6]	T	G	3.992e^-6	0.016	INTRON CG9628	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	10863702	3L_10863702_SNP [dm3] 3L_10870602_SNP [dm6]	G	T	4.024e^-6	0.016	INTRON tna	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14618369	3L_14618369_SNP [dm3] 3L_14625269_SNP [dm6]	T	G	4.049e^-6	0.016	INTRON CG9628	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	16277888	2R_16277888_SNP [dm3] 2R_20390383_SNP [dm6]	T	C	4.090e^-6	0.017	INTERGENIC
3R	17333466	3R_17333466_SNP [dm3] 3R_21507744_SNP [dm6]	G	A	4.091e^-6	0.017	INTRON C15	TF binding site BDTNP1_TFBS_da
X	6090573	X_6090573_SNP [dm3] X_6196540_SNP [dm6]	A	C	4.124e^-6	0.017	UPSTREAM CG32750 DOWNSTREAM CG32751 INTERGENIC
X	8433931	X_8433931_SNP [dm3] X_8539898_SNP [dm6]	T	C	4.190e^-6	0.017	INTRON Nrg
3R	24164708	3R_24164708_SNP [dm3] 3R_28338986_SNP [dm6]	C	T	4.208e^-6	0.017	SYNONYMOUS_CODING Gfat2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2081852	3L_2081852_SNP [dm3] 3L_2081852_SNP [dm6]	G	A	4.210e^-6	0.017	SYNONYMOUS_CODING sls INTRON sls
3L	2081945	3L_2081945_SNP [dm3] 3L_2081945_SNP [dm6]	C	T	4.210e^-6	0.017	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_sens
3L	2082035	3L_2082035_SNP [dm3] 3L_2082035_SNP [dm6]	C	T	4.210e^-6	0.017	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3258089	2R_3258089_SNP [dm3] 2R_7370584_SNP [dm6]	A	G	4.220e^-6	0.017	INTRON Dscam1	regulatory region REDfly_CRMs
3L	3797253	3L_3797253_SNP [dm3] 3L_3797253_SNP [dm6]	A	T	4.233e^-6	0.017	INTRON CG32264
3L	3797255	3L_3797255_SNP [dm3] 3L_3797255_SNP [dm6]	T	G	4.233e^-6	0.017	INTRON CG32264
3L	10038662	3L_10038662_SNP [dm3] 3L_10045562_SNP [dm6]	T	G	4.256e^-6	0.017	INTRON dpr6
3L	16957168	3L_16957168_SNP [dm3] 3L_16964068_SNP [dm6]	T	C	4.261e^-6	0.017	SYNONYMOUS_CODING Nc73EF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8499284	2L_8499284_SNP [dm3] 2L_8499284_SNP [dm6]	T	A	4.262e^-6	0.017	INTRON Dh31
3L	15946569	3L_15946569_DEL [dm3] 3L_15953469_DEL [dm6]	CATAC	C	4.272e^-6	0.017	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	22159235	2L_22159235_SNP [dm3] 2L_22159235_SNP [dm6]	G	T	4.280e^-6	0.017	UTR_3_PRIME CG42748 INTRON CG42748
2R	16962995	2R_16962995_SNP [dm3] 2R_21075490_SNP [dm6]	G	A	4.320e^-6	0.017	UPSTREAM Treh INTRON Treh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3682241	2L_3682241_SNP [dm3] 2L_3682241_SNP [dm6]	A	G	4.328e^-6	0.017	INTRON CG34340	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10219814	3L_10219814_SNP [dm3] 3L_10226714_SNP [dm6]	C	A	4.355e^-6	0.017	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	795740	2R_795740_SNP [dm3] 2R_4908235_SNP [dm6]	G	A	4.384e^-6	0.017	UPSTREAM CG44102 INTERGENIC	transposable element FlyBase
X	14153754	X_14153754_SNP [dm3] X_14259721_SNP [dm6]	G	T	4.394e^-6	0.017	INTERGENIC
3L	9736786	3L_9736786_SNP [dm3] 3L_9743686_SNP [dm6]	C	A	4.397e^-6	0.017	UTR_5_PRIME CG42268 INTRON CG42268 & 1 other
2L	8195225	2L_8195225_SNP [dm3] 2L_8195225_SNP [dm6]	T	C	4.405e^-6	0.017	SYNONYMOUS_CODING CG8475 EXON CR44116	TF binding site mE1_TFBS_sens
3L	7353525	3L_7353525_SNP [dm3] 3L_7360425_SNP [dm6]	C	A	4.419e^-6	0.017	UPSTREAM Sec63 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	17978172	2R_17978172_SNP [dm3] 2R_22090667_SNP [dm6]	A	T	4.427e^-6	0.017	UTR_5_PRIME CG43393 DOWNSTREAM CG44163 & 1 other
2L	11855082	2L_11855082_SNP [dm3] 2L_11855082_SNP [dm6]	T	G	4.547e^-6	0.017	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11829644	2R_11829644_DEL [dm3] 2R_15942139_DEL [dm6]	ACTAAACACAT...	A	4.550e^-6	0.017	UPSTREAM CG8299 & 1 other INTERGENIC
2R	10790841	2R_10790841_SNP [dm3] 2R_14903336_SNP [dm6]	C	T	4.581e^-6	0.017	SYNONYMOUS_CODING CG10249 DOWNSTREAM Cyp317a1
2R	15207806	2R_15207806_SNP [dm3] 2R_19320301_SNP [dm6]	T	C	4.596e^-6	0.017	INTRON Rgk1
2R	15207807	2R_15207807_SNP [dm3] 2R_19320302_SNP [dm6]	A	T	4.596e^-6	0.017	INTRON Rgk1
2R	15207810	2R_15207810_SNP [dm3] 2R_19320305_SNP [dm6]	G	A	4.596e^-6	0.017	INTRON Rgk1
2R	15337998	2R_15337998_SNP [dm3] 2R_19450493_SNP [dm6]	T	C	4.596e^-6	0.017	UPSTREAM betaTub56D INTRON betaTub56D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	1167681	X_1167681_INS [dm3] X_1273648_INS [dm6]	G	GCGCGACAAG	4.597e^-6	0.017	INTRON Atf3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5281893	2L_5281893_SNP [dm3] 2L_5281893_SNP [dm6]	C	T	4.601e^-6	0.017	SYNONYMOUS_CODING Bub1	TF binding site mE1_TFBS_cad
3L	11421420	3L_11421420_SNP [dm3] 3L_11428320_SNP [dm6]	C	T	4.604e^-6	0.017	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	15132135	2L_15132135_SNP [dm3] 2L_15132135_SNP [dm6]	A	T	4.652e^-6	0.017	DOWNSTREAM tRNA:L:35C INTERGENIC
3L	14618173	3L_14618173_SNP [dm3] 3L_14625073_SNP [dm6]	A	G	4.682e^-6	0.018	INTRON CG9628	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	16864725	3R_16864725_SNP [dm3] 3R_21039003_SNP [dm6]	G	A	4.706e^-6	0.018	SYNONYMOUS_CODING Dhc93AB
2R	15207741	2R_15207741_INS [dm3] 2R_19320236_INS [dm6]	T	TAAT	4.725e^-6	0.018	INTRON Rgk1
X	20430126	X_20430126_INS [dm3] X_20559099_INS [dm6]	C	CATGTTTTACAGC...	4.748e^-6	0.018	INTRON RunxB
2L	12759496	2L_12759496_SNP [dm3] 2L_12759496_SNP [dm6]	A	T	4.761e^-6	0.018	DOWNSTREAM CG15483 INTERGENIC
2R	10842251	2R_10842251_SNP [dm3] 2R_14954746_SNP [dm6]	C	T	4.765e^-6	0.018	INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2675864	3L_2675864_MNP [dm3] 3L_2675864_MNP [dm6]	AGC	GAT	4.778e^-6	0.018	INTRON Fife
3L	2675878	3L_2675878_SNP [dm3] 3L_2675878_SNP [dm6]	A	T	4.778e^-6	0.018	INTRON Fife
3L	10852659	3L_10852659_SNP [dm3] 3L_10859559_SNP [dm6]	A	T	4.810e^-6	0.018	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_kn
2L	15021659	2L_15021659_SNP [dm3] 2L_15021659_SNP [dm6]	G	C	4.840e^-6	0.018	INTRON GABA-B-R1
X	8105317	X_8105317_DEL [dm3] X_8211284_DEL [dm6]	CGCATTCGTATCCGCATTCG...	C	4.879e^-6	0.018	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	12099128	X_12099128_SNP [dm3] X_12205095_SNP [dm6]	T	G	4.883e^-6	0.018	INTRON Ten-a
2L	5104437	2L_5104437_SNP [dm3] 2L_5104437_SNP [dm6]	A	T	4.910e^-6	0.018	INTRON Msp300
2L	5104649	2L_5104649_SNP [dm3] 2L_5104649_SNP [dm6]	A	G	4.910e^-6	0.018	INTRON Msp300
2L	5104653	2L_5104653_SNP [dm3] 2L_5104653_SNP [dm6]	T	C	4.910e^-6	0.018	INTRON Msp300
2L	5104681	2L_5104681_SNP [dm3] 2L_5104681_SNP [dm6]	A	T	4.910e^-6	0.018	INTRON Msp300
2L	5104686	2L_5104686_DEL [dm3] 2L_5104686_DEL [dm6]	TT	T	4.910e^-6	0.018	INTRON Msp300
2L	5104728	2L_5104728_SNP [dm3] 2L_5104728_SNP [dm6]	A	T	4.910e^-6	0.018	INTRON Msp300
2L	5104741	2L_5104741_SNP [dm3] 2L_5104741_SNP [dm6]	G	T	4.910e^-6	0.018	INTRON Msp300
2L	5104745	2L_5104745_INS [dm3] 2L_5104745_INS [dm6]	C	CATT	4.910e^-6	0.018	INTRON Msp300
3L	15942701	3L_15942701_SNP [dm3] 3L_15949601_SNP [dm6]	T	C	4.910e^-6	0.018	INTRON Pka-C3
3L	6071153	3L_6071153_SNP [dm3] 3L_6078053_SNP [dm6]	T	A	4.910e^-6	0.018	INTRON CG6619
3L	6071154	3L_6071154_SNP [dm3] 3L_6078054_SNP [dm6]	G	A	4.910e^-6	0.018	INTRON CG6619
3L	6071379	3L_6071379_SNP [dm3] 3L_6078279_SNP [dm6]	T	A	4.910e^-6	0.018	INTRON CG6619
3L	7596412	3L_7596412_SNP [dm3] 3L_7603312_SNP [dm6]	G	C	4.910e^-6	0.018	SYNONYMOUS_CODING CG33275
X	15288879	X_15288879_SNP [dm3] X_15394846_SNP [dm6]	A	T	4.910e^-6	0.018	INTRON Cngl
2R	20392418	2R_20392418_SNP [dm3] 2R_24504895_SNP [dm6]	G	A	4.936e^-6	0.018	INTERGENIC
2R	9272441	2R_9272441_SNP [dm3] 2R_13384936_SNP [dm6]	C	T	4.966e^-6	0.018	INTERGENIC
2L	5109385	2L_5109385_SNP [dm3] 2L_5109385_SNP [dm6]	C	A	5.003e^-6	0.018	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_Trl
3R	15082094	3R_15082094_SNP [dm3] 3R_19256372_SNP [dm6]	A	C	5.022e^-6	0.018	UPSTREAM CG14280 INTERGENIC
3L	1444860	3L_1444860_SNP [dm3] 3L_1444860_SNP [dm6]	T	C	5.030e^-6	0.018	INTRON Ptp61F
3L	5844672	3L_5844672_SNP [dm3] 3L_5851572_SNP [dm6]	T	A	5.034e^-6	0.018	INTERGENIC
3L	10001612	3L_10001612_SNP [dm3] 3L_10008512_SNP [dm6]	T	A	5.034e^-6	0.018	INTRON dpr6
2R	20394366	2R_20394366_SNP [dm3] 2R_24506843_SNP [dm6]	T	C	5.043e^-6	0.018	UPSTREAM CG13581 INTERGENIC
2R	10715611	2R_10715611_INS [dm3] 2R_14828106_INS [dm6]	T	TTTTTTATTTT...	5.082e^-6	0.018	INTERGENIC
2L	15128718	2L_15128718_SNP [dm3] 2L_15128718_SNP [dm6]	T	C	5.197e^-6	0.018	UPSTREAM CR43854 EXON CR44706
2L	2128479	2L_2128479_SNP [dm3] 2L_2128479_SNP [dm6]	A	G	5.232e^-6	0.018	NON_SYNONYMOUS_CODING CG4259
X	7875265	X_7875265_SNP [dm3] X_7981232_SNP [dm6]	G	T	5.253e^-6	0.018	INTRON sn
2L	2621439	2L_2621439_SNP [dm3] 2L_2621439_SNP [dm6]	A	G	5.267e^-6	0.018	DOWNSTREAM CG43403 INTERGENIC
3L	12941932	3L_12941932_DEL [dm3] 3L_12948832_DEL [dm6]	GGCG	AT	5.270e^-6	0.018	INTERGENIC
2L	12112476	2L_12112476_SNP [dm3] 2L_12112476_SNP [dm6]	A	C	5.293e^-6	0.018	DOWNSTREAM Phae2 INTERGENIC
2L	10815256	2L_10815256_SNP [dm3] 2L_10815256_SNP [dm6]	C	T	5.300e^-6	0.018	INTRON Nos
3L	1270683	3L_1270683_SNP [dm3] 3L_1270683_SNP [dm6]	G	A	5.322e^-6	0.018	INTRON CG9134
X	4288907	X_4288907_SNP [dm3] X_4394874_SNP [dm6]	A	G	5.420e^-6	0.019	UPSTREAM CR32773 INTRON CR32773
2L	9267291	2L_9267291_SNP [dm3] 2L_9267291_SNP [dm6]	C	A	5.443e^-6	0.019	INTRON Ggamma30A
2L	9268981	2L_9268981_SNP [dm3] 2L_9268981_SNP [dm6]	T	C	5.443e^-6	0.019	INTRON Ggamma30A
2L	9269664	2L_9269664_SNP [dm3] 2L_9269664_SNP [dm6]	C	T	5.443e^-6	0.019	INTRON Ggamma30A
3L	11421346	3L_11421346_SNP [dm3] 3L_11428246_SNP [dm6]	C	T	5.456e^-6	0.019	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	11714075	X_11714075_SNP [dm3] X_11820042_SNP [dm6]	T	C	5.457e^-6	0.019	INTRON rudhira	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11926443	3L_11926443_SNP [dm3] 3L_11933343_SNP [dm6]	G	T	5.462e^-6	0.019	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20224160	2R_20224160_SNP [dm3] 2R_24336637_SNP [dm6]	C	A	5.474e^-6	0.019	UPSTREAM CR44282 INTERGENIC
2R	17724954	2R_17724954_SNP [dm3] 2R_21837449_SNP [dm6]	G	A	5.479e^-6	0.019	DOWNSTREAM CG4372 INTERGENIC
3R	16245947	3R_16245947_SNP [dm3] 3R_20420225_SNP [dm6]	G	A	5.480e^-6	0.019	INTRON Gfrl
3R	25802767	3R_25802767_SNP [dm3] 3R_29977045_SNP [dm6]	C	A	5.601e^-6	0.019	INTERGENIC
2R	9268332	2R_9268332_SNP [dm3] 2R_13380827_SNP [dm6]	A	G	5.630e^-6	0.019	INTERGENIC
X	20362505	X_20362505_SNP [dm3] X_20491478_SNP [dm6]	T	G	5.644e^-6	0.019	UPSTREAM RhoGAP19D INTRON RhoGAP19D
2L	12760837	2L_12760837_SNP [dm3] 2L_12760837_SNP [dm6]	A	G	5.656e^-6	0.019	SYNONYMOUS_CODING CG15483
2L	8278863	2L_8278863_SNP [dm3] 2L_8278863_SNP [dm6]	A	T	5.660e^-6	0.019	INTRON Btk29A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2R	19773720	2R_19773720_SNP [dm3] 2R_23886197_SNP [dm6]	T	C	5.702e^-6	0.019	UPSTREAM CG5597 INTERGENIC
X	8108665	X_8108665_SNP [dm3] X_8214632_SNP [dm6]	T	A	5.746e^-6	0.019	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	8108669	X_8108669_SNP [dm3] X_8214636_SNP [dm6]	C	T	5.746e^-6	0.019	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	8110346	X_8110346_SNP [dm3] X_8216313_SNP [dm6]	T	C	5.746e^-6	0.019	UTR_5_PRIME sdt UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8110352	X_8110352_SNP [dm3] X_8216319_SNP [dm6]	T	C	5.746e^-6	0.019	UTR_5_PRIME sdt UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8110760	X_8110760_SNP [dm3] X_8216727_SNP [dm6]	A	T	5.746e^-6	0.019	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8110768	X_8110768_SNP [dm3] X_8216735_SNP [dm6]	T	A	5.746e^-6	0.019	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8110769	X_8110769_SNP [dm3] X_8216736_SNP [dm6]	T	A	5.746e^-6	0.019	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8110784	X_8110784_INS [dm3] X_8216751_INS [dm6]	T	TATA	5.746e^-6	0.019	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8110786	X_8110786_SNP [dm3] X_8216753_SNP [dm6]	G	A	5.746e^-6	0.019	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3778437	2L_3778437_SNP [dm3] 2L_3778437_SNP [dm6]	G	A	5.749e^-6	0.019	UPSTREAM bowl INTRON bowl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3829200	3L_3829200_DEL [dm3] 3L_3829200_DEL [dm6]	AGACAAA	A	5.771e^-6	0.019	UTR_5_PRIME enc DOWNSTREAM Rdh INTRON enc
3R	23483318	3R_23483318_SNP [dm3] 3R_27657596_SNP [dm6]	T	A	5.777e^-6	0.019	UTR_3_PRIME Mlc1 UPSTREAM tau
2L	5104682	2L_5104682_SNP [dm3] 2L_5104682_SNP [dm6]	T	G	5.846e^-6	0.019	INTRON Msp300
3L	10219765	3L_10219765_SNP [dm3] 3L_10226665_SNP [dm6]	G	T	5.947e^-6	0.019	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15053258	2R_15053258_SNP [dm3] 2R_19165753_SNP [dm6]	T	G	5.956e^-6	0.019	UTR_5_PRIME CG10737 INTRON CG10737
2L	5369829	2L_5369829_SNP [dm3] 2L_5369829_SNP [dm6]	T	C	5.972e^-6	0.019	INTERGENIC
2L	20683601	2L_20683601_SNP [dm3] 2L_20683601_SNP [dm6]	T	G	6.043e^-6	0.02	UTR_3_PRIME CG2617 & 1 other DOWNSTREAM CG2617	TF binding site BDTNP1_TFBS_dl
2L	5104726	2L_5104726_SNP [dm3] 2L_5104726_SNP [dm6]	C	A	6.057e^-6	0.02	INTRON Msp300
X	20316630	X_20316630_SNP [dm3] X_20445603_SNP [dm6]	G	T	6.244e^-6	0.02	UPSTREAM CG42578 DOWNSTREAM CG1695 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9651336	3L_9651336_SNP [dm3] 3L_9658236_SNP [dm6]	T	A	6.254e^-6	0.02	INTRON fry & 1 other	TF binding site mE1_TFBS_inv
3L	9651337	3L_9651337_SNP [dm3] 3L_9658237_SNP [dm6]	A	C	6.254e^-6	0.02	INTRON fry & 1 other	TF binding site mE1_TFBS_inv
2L	5109175	2L_5109175_SNP [dm3] 2L_5109175_SNP [dm6]	G	A	6.317e^-6	0.02	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_Trl
2L	7372675	2L_7372675_SNP [dm3] 2L_7372675_SNP [dm6]	A	G	6.406e^-6	0.021	INTRON Wnt10	TF binding site mE1_TFBS_cad
X	21863573	X_21863573_SNP [dm3] X_22461737_SNP [dm6]	G	T	6.500e^-6	0.021	INTRON CG14619	TF binding site mE1_TFBS_HSA
2R	7563104	2R_7563104_SNP [dm3] 2R_11675599_SNP [dm6]	T	A	6.571e^-6	0.021	UPSTREAM Tret1-2 DOWNSTREAM Tret1-1 INTRON Roc2
2R	19539113	2R_19539113_SNP [dm3] 2R_23651590_SNP [dm6]	C	T	6.633e^-6	0.021	SPLICE_SITE_REGION retn INTRON retn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16061294	2L_16061294_SNP [dm3] 2L_16061294_SNP [dm6]	C	T	6.641e^-6	0.021	INTRON beat-Ia
2L	2173541	2L_2173541_SNP [dm3] 2L_2173541_SNP [dm6]	G	C	6.646e^-6	0.021	INTRON aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	8278862	2L_8278862_SNP [dm3] 2L_8278862_SNP [dm6]	G	A	6.733e^-6	0.021	INTRON Btk29A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	8195266	2L_8195266_SNP [dm3] 2L_8195266_SNP [dm6]	A	G	6.777e^-6	0.022	SYNONYMOUS_CODING CG8475 EXON CR44116	TF binding site mE1_TFBS_sens
X	8105682	X_8105682_SNP [dm3] X_8211649_SNP [dm6]	G	A	6.835e^-6	0.022	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
2L	8256263	2L_8256263_SNP [dm3] 2L_8256263_SNP [dm6]	C	T	6.872e^-6	0.022	INTRON CG8086
X	20362796	X_20362796_SNP [dm3] X_20491769_SNP [dm6]	C	T	6.906e^-6	0.022	UPSTREAM RhoGAP19D INTRON RhoGAP19D
2R	828526	2R_828526_SNP [dm3] 2R_4941021_SNP [dm6]	C	A	6.948e^-6	0.022	INTRON Ir41a
2R	6145632	2R_6145632_SNP [dm3] 2R_10258127_SNP [dm6]	C	T	7.054e^-6	0.022	INTRON CG12911	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14384719	2R_14384719_SNP [dm3] 2R_18497214_SNP [dm6]	G	A	7.055e^-6	0.022	INTRON CG30116
X	16901903	X_16901903_SNP [dm3] X_17007870_SNP [dm6]	G	A	7.159e^-6	0.023	INTRON CG45002
X	1167743	X_1167743_INS [dm3] X_1273710_INS [dm6]	T	TGTATCTGT	7.213e^-6	0.023	INTRON Atf3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18588765	2R_18588765_SNP [dm3] 2R_22701260_SNP [dm6]	A	C	7.221e^-6	0.023	UPSTREAM robo DOWNSTREAM CG30259 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
2L	16492887	2L_16492887_SNP [dm3] 2L_16492887_SNP [dm6]	G	T	7.240e^-6	0.023	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	677559	2R_677559_DEL [dm3] 2R_4790054_DEL [dm6]	TG	T	7.289e^-6	0.023	INTERGENIC	transposable element FlyBase
X	14242006	X_14242006_SNP [dm3] X_14347973_SNP [dm6]	C	A	7.293e^-6	0.023	INTRON dpr8
X	6095427	X_6095427_SNP [dm3] X_6201394_SNP [dm6]	G	A	7.324e^-6	0.023	INTRON vanin-like
2R	15549450	2R_15549450_SNP [dm3] 2R_19661945_SNP [dm6]	C	G	7.378e^-6	0.023	UPSTREAM mir-6-1 & 7 others INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	15550122	2R_15550122_SNP [dm3] 2R_19662617_SNP [dm6]	A	T	7.378e^-6	0.023	UPSTREAM mir-3 & 2 others INTRON CG11018	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15054901	2R_15054901_SNP [dm3] 2R_19167396_SNP [dm6]	A	C	7.406e^-6	0.023	INTRON CG10737
X	19727654	X_19727654_SNP [dm3] X_19833621_SNP [dm6]	T	A	7.433e^-6	0.023	SYNONYMOUS_CODING pico	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	15060010	X_15060010_SNP [dm3] X_15165977_SNP [dm6]	T	A	7.450e^-6	0.023	INTERGENIC
3R	22912006	3R_22912006_SNP [dm3] 3R_27086284_SNP [dm6]	G	T	7.484e^-6	0.023	INTRON Cpr97Ea
X	19986281	X_19986281_SNP [dm3] X_20092248_SNP [dm6]	G	A	7.511e^-6	0.023	SYNONYMOUS_CODING fd19B	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15213041	2R_15213041_SNP [dm3] 2R_19325536_SNP [dm6]	G	A	7.531e^-6	0.023	UPSTREAM Rgk1 INTRON Rgk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14838791	2R_14838791_SNP [dm3] 2R_18951286_SNP [dm6]	G	T	7.647e^-6	0.023	INTRON sano
2R	20222838	2R_20222838_INS [dm3] 2R_24335315_INS [dm6]	G	GAGGATTG	7.693e^-6	0.024	EXON CR44282	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18588772	2R_18588772_SNP [dm3] 2R_22701267_SNP [dm6]	G	A	7.861e^-6	0.024	UPSTREAM robo DOWNSTREAM CG30259 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
2L	1203983	2L_1203983_SNP [dm3] 2L_1203983_SNP [dm6]	G	T	7.906e^-6	0.024	UPSTREAM CG14342 INTERGENIC
2L	2669574	2L_2669574_SNP [dm3] 2L_2669574_SNP [dm6]	G	A	7.912e^-6	0.024	UPSTREAM Gr23a INTERGENIC
2L	3682203	2L_3682203_SNP [dm3] 2L_3682203_SNP [dm6]	A	C	7.920e^-6	0.024	INTRON CG34340	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	3682210	2L_3682210_SNP [dm3] 2L_3682210_SNP [dm6]	C	T	7.920e^-6	0.024	INTRON CG34340	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	15290884	X_15290884_SNP [dm3] X_15396851_SNP [dm6]	A	G	7.925e^-6	0.024	SYNONYMOUS_CODING Cngl	TF binding site mE1_TFBS_chinmo
2L	8278866	2L_8278866_SNP [dm3] 2L_8278866_SNP [dm6]	C	T	7.931e^-6	0.024	INTRON Btk29A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	13169380	3L_13169380_SNP [dm3] 3L_13176280_SNP [dm6]	G	T	8.012e^-6	0.024	SYNONYMOUS_CODING snky
3L	1421357	3L_1421357_SNP [dm3] 3L_1421357_SNP [dm6]	G	A	8.033e^-6	0.024	UTR_3_PRIME CG9173 INTRON Ptp61F	TF binding site mE1_TFBS_cad
2L	12498018	2L_12498018_SNP [dm3] 2L_12498018_SNP [dm6]	T	G	8.055e^-6	0.024	UPSTREAM t-cup INTRON bun
2L	15122780	2L_15122780_SNP [dm3] 2L_15122780_SNP [dm6]	T	A	8.101e^-6	0.024	INTERGENIC
2L	13352848	2L_13352848_SNP [dm3] 2L_13352848_SNP [dm6]	T	A	8.114e^-6	0.024	NON_SYNONYMOUS_CODING CG9395	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8048931	X_8048931_SNP [dm3] X_8154898_SNP [dm6]	A	T	8.186e^-6	0.025	UTR_3_PRIME Traf6 DOWNSTREAM CG18262
2L	8161844	2L_8161844_SNP [dm3] 2L_8161844_SNP [dm6]	G	T	8.213e^-6	0.025	UTR_3_PRIME CG8498 DOWNSTREAM Rbsn-5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	18018643	2L_18018643_SNP [dm3] 2L_18018643_SNP [dm6]	T	C	8.403e^-6	0.025	INTRON rdo
2R	18588759	2R_18588759_SNP [dm3] 2R_22701254_SNP [dm6]	C	T	8.592e^-6	0.026	UPSTREAM robo DOWNSTREAM CG30259 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
X	6743734	X_6743734_SNP [dm3] X_6849701_SNP [dm6]	T	C	8.640e^-6	0.026	UPSTREAM CG4558 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15723667	3L_15723667_SNP [dm3] 3L_15730567_SNP [dm6]	A	C	8.664e^-6	0.026	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	16305710	2L_16305710_SNP [dm3] 2L_16305710_SNP [dm6]	A	G	8.728e^-6	0.026	UTR_3_PRIME c_2_M DOWNSTREAM CG5861
2R	15551069	2R_15551069_SNP [dm3] 2R_19663564_SNP [dm6]	T	G	8.735e^-6	0.026	UTR_3_PRIME CG11018 DOWNSTREAM hrg
2R	795753	2R_795753_SNP [dm3] 2R_4908248_SNP [dm6]	T	G	8.740e^-6	0.026	UPSTREAM CG44102 INTERGENIC	transposable element FlyBase
X	20350407	X_20350407_SNP [dm3] X_20479380_SNP [dm6]	T	G	8.760e^-6	0.026	INTRON RhoGAP19D
X	21862023	X_21862023_INS [dm3] X_22460187_INS [dm6]	G	GAAAAGTATATTGCTTTGTA...	8.779e^-6	0.026	INTRON CG14619
3L	13890519	3L_13890519_SNP [dm3] 3L_13897419_SNP [dm6]	A	C	8.841e^-6	0.026	INTRON dysc
2R	8543598	2R_8543598_SNP [dm3] 2R_12656093_SNP [dm6]	G	A	8.844e^-6	0.026	DOWNSTREAM ZnT49B INTRON CG8646
2R	19094057	2R_19094057_SNP [dm3] 2R_23206534_SNP [dm6]	C	G	8.867e^-6	0.026	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	10455316	2L_10455316_SNP [dm3] 2L_10455316_SNP [dm6]	A	G	8.930e^-6	0.026	SYNONYMOUS_CODING CG5322
2R	10842289	2R_10842289_SNP [dm3] 2R_14954784_SNP [dm6]	G	T	8.985e^-6	0.026	INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11421329	3L_11421329_SNP [dm3] 3L_11428229_SNP [dm6]	T	C	9.027e^-6	0.026	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	11421433	3L_11421433_SNP [dm3] 3L_11428333_SNP [dm6]	G	C	9.054e^-6	0.026	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	8110787	X_8110787_SNP [dm3] X_8216754_SNP [dm6]	G	T	9.114e^-6	0.027	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18456371	2R_18456371_SNP [dm3] 2R_22568866_SNP [dm6]	C	A	9.158e^-6	0.027	INTRON dnr1	TF binding site mE1_TFBS_Trl
2L	7544517	2L_7544517_SNP [dm3] 2L_7544517_SNP [dm6]	C	A	9.171e^-6	0.027	UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	7544577	2L_7544577_SNP [dm3] 2L_7544577_SNP [dm6]	A	G	9.171e^-6	0.027	UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	7544651	2L_7544651_INS [dm3] 2L_7544651_INS [dm6]	T	TT	9.171e^-6	0.027	UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	7544801	2L_7544801_SNP [dm3] 2L_7544801_SNP [dm6]	T	C	9.171e^-6	0.027	UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	23482879	3R_23482879_SNP [dm3] 3R_27657157_SNP [dm6]	G	T	9.234e^-6	0.027	UTR_3_PRIME Mlc1 UPSTREAM tau DOWNSTREAM Mlc1
X	10100062	X_10100062_SNP [dm3] X_10206029_SNP [dm6]	T	C	9.374e^-6	0.027	UTR_3_PRIME CG15309 DOWNSTREAM CR32690 & 1 other INTRON CR44894
X	10209390	X_10209390_SNP [dm3] X_10315357_SNP [dm6]	C	T	9.399e^-6	0.027	INTRON alpha-Man-I
X	4287689	X_4287689_SNP [dm3] X_4393656_SNP [dm6]	G	A	9.405e^-6	0.027	INTRON CR32773
X	6090004	X_6090004_SNP [dm3] X_6195971_SNP [dm6]	G	A	9.425e^-6	0.027	SYNONYMOUS_CODING CG32750 DOWNSTREAM CG32751
2R	5084613	2R_5084613_DEL [dm3] 2R_9197108_DEL [dm6]	CTCGTC	C	9.449e^-6	0.027	INTRON unpg
3R	9677105	3R_9677105_SNP [dm3] 3R_13851383_SNP [dm6]	A	C	9.458e^-6	0.027	INTERGENIC
X	6095426	X_6095426_SNP [dm3] X_6201393_SNP [dm6]	A	G	9.475e^-6	0.027	INTRON vanin-like
2L	10322139	2L_10322139_SNP [dm3] 2L_10322139_SNP [dm6]	C	A	9.477e^-6	0.027	UPSTREAM CG4995 & 1 other INTRON CG5381	TF binding site mE1_TFBS_zfh1
2L	6503822	2L_6503822_SNP [dm3] 2L_6503822_SNP [dm6]	G	A	9.543e^-6	0.027	INTRON CG31637
2R	17973544	2R_17973544_SNP [dm3] 2R_22086039_SNP [dm6]	G	A	9.543e^-6	0.027	SYNONYMOUS_CODING CG13502 DOWNSTREAM Synj
3L	11726139	3L_11726139_SNP [dm3] 3L_11733039_SNP [dm6]	C	T	9.543e^-6	0.027	SYNONYMOUS_CODING CG32087 DOWNSTREAM CG32088 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12390711	3L_12390711_SNP [dm3] 3L_12397611_SNP [dm6]	A	T	9.543e^-6	0.027	NON_SYNONYMOUS_CODING CG32104 DOWNSTREAM Obp69a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12393600	3L_12393600_SNP [dm3] 3L_12400500_SNP [dm6]	G	A	9.543e^-6	0.027	SYNONYMOUS_CODING Smyd4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10461473	X_10461473_SNP [dm3] X_10567440_SNP [dm6]	C	T	9.543e^-6	0.027	UPSTREAM CG15296 INTRON spri
2L	13015043	2L_13015043_SNP [dm3] 2L_13015043_SNP [dm6]	T	A	9.666e^-6	0.027	SPLICE_SITE_REGION CG9934 INTRON CG9934
2L	13015079	2L_13015079_SNP [dm3] 2L_13015079_SNP [dm6]	T	C	9.666e^-6	0.027	INTRON CG9934
2L	13015359	2L_13015359_SNP [dm3] 2L_13015359_SNP [dm6]	G	A	9.666e^-6	0.027	SYNONYMOUS_CODING CG9934
2L	13018630	2L_13018630_SNP [dm3] 2L_13018630_SNP [dm6]	A	G	9.666e^-6	0.027	DOWNSTREAM A16 INTRON CG9934	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	13018735	2L_13018735_SNP [dm3] 2L_13018735_SNP [dm6]	G	T	9.666e^-6	0.027	DOWNSTREAM A16 INTRON CG9934	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	13020036	2L_13020036_SNP [dm3] 2L_13020036_SNP [dm6]	G	T	9.666e^-6	0.027	UPSTREAM CG9934 INTRON A16
2L	13022338	2L_13022338_SNP [dm3] 2L_13022338_SNP [dm6]	C	A	9.666e^-6	0.027	UTR_3_PRIME CG9932 DOWNSTREAM CG9932
2L	13024196	2L_13024196_SNP [dm3] 2L_13024196_SNP [dm6]	G	A	9.666e^-6	0.027	SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10846133	2R_10846133_SNP [dm3] 2R_14958628_SNP [dm6]	C	T	9.752e^-6	0.027	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	3123198	X_3123198_SNP [dm3] X_3229165_SNP [dm6]	A	G	9.772e^-6	0.027	INTRON dnc
X	4244295	X_4244295_SNP [dm3] X_4350262_SNP [dm6]	T	C	9.794e^-6	0.027	INTRON norpA
3L	10198451	3L_10198451_SNP [dm3] 3L_10205351_SNP [dm6]	C	A	9.851e^-6	0.027	UPSTREAM CR44538 INTERGENIC
X	7092321	X_7092321_SNP [dm3] X_7198288_SNP [dm6]	T	C	9.853e^-6	0.027	INTRON CR44357 & 1 other
2L	7544587	2L_7544587_SNP [dm3] 2L_7544587_SNP [dm6]	C	G	9.861e^-6	0.027	UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	18191300	X_18191300_SNP [dm3] X_18297267_SNP [dm6]	G	A	9.875e^-6	0.027	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18191715	X_18191715_DEL [dm3] X_18297682_DEL [dm6]	TTA	T	9.875e^-6	0.027	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18191845	X_18191845_SNP [dm3] X_18297812_SNP [dm6]	G	A	9.875e^-6	0.027	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5104587	2L_5104587_SNP [dm3] 2L_5104587_SNP [dm6]	T	A	1.001e^-5	0.028	INTRON Msp300
3R	15079275	3R_15079275_SNP [dm3] 3R_19253553_SNP [dm6]	T	G	1.003e^-5	0.028	INTERGENIC
2R	9822214	2R_9822214_SNP [dm3] 2R_13934709_SNP [dm6]	G	A	1.005e^-5	0.028	INTRON shot	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
3L	12983580	3L_12983580_SNP [dm3] 3L_12990480_SNP [dm6]	A	T	1.006e^-5	0.028	INTERGENIC
2L	8180332	2L_8180332_SNP [dm3] 2L_8180332_SNP [dm6]	A	G	1.012e^-5	0.028	SYNONYMOUS_CODING Piezo INTRON Piezo	TF binding site mE1_TFBS_cad
3L	10198541	3L_10198541_SNP [dm3] 3L_10205441_SNP [dm6]	A	T	1.014e^-5	0.028	UPSTREAM CR44538 INTERGENIC
2L	16108031	2L_16108031_SNP [dm3] 2L_16108031_SNP [dm6]	G	A	1.034e^-5	0.028	INTERGENIC
2R	15551096	2R_15551096_DEL [dm3] 2R_19663591_DEL [dm6]	AGTTAGACA	A	1.034e^-5	0.028	UTR_3_PRIME CG11018 DOWNSTREAM hrg
X	13219199	X_13219199_SNP [dm3] X_13325166_SNP [dm6]	G	T	1.041e^-5	0.028	INTRON IP3K2
3L	4809535	3L_4809535_SNP [dm3] 3L_4809535_SNP [dm6]	C	T	1.048e^-5	0.028	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16822896	2R_16822896_SNP [dm3] 2R_20935391_SNP [dm6]	C	T	1.049e^-5	0.028	INTRON Rx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	5236828	2R_5236828_SNP [dm3] 2R_9349323_SNP [dm6]	G	A	1.050e^-5	0.028	DOWNSTREAM Or45a INTRON CG13954 & 1 other
X	17644552	X_17644552_SNP [dm3] X_17750519_SNP [dm6]	C	G	1.055e^-5	0.028	INTRON CG42684	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11873118	3L_11873118_SNP [dm3] 3L_11880018_SNP [dm6]	C	T	1.057e^-5	0.028	SYNONYMOUS_CODING CG14128 INTRON CG44837	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4294051	X_4294051_INS [dm3] X_4400018_INS [dm6]	G	GGGGA	1.060e^-5	0.028	INTRON CR32773
2L	17861921	2L_17861921_SNP [dm3] 2L_17861921_SNP [dm6]	C	A	1.081e^-5	0.028	INTRON CadN2
X	4294106	X_4294106_INS [dm3] X_4400073_INS [dm6]	C	CA	1.089e^-5	0.028	INTRON CR32773
X	4294109	X_4294109_SNP [dm3] X_4400076_SNP [dm6]	G	A	1.089e^-5	0.028	INTRON CR32773
X	4294111	X_4294111_SNP [dm3] X_4400078_SNP [dm6]	G	C	1.089e^-5	0.028	INTRON CR32773
3R	17333502	3R_17333502_SNP [dm3] 3R_21507780_SNP [dm6]	C	T	1.090e^-5	0.028	INTRON C15	TF binding site BDTNP1_TFBS_da
2R	14892462	2R_14892462_SNP [dm3] 2R_19004957_SNP [dm6]	C	T	1.096e^-5	0.028	INTRON tn
2R	18461371	2R_18461371_SNP [dm3] 2R_22573866_SNP [dm6]	C	G	1.096e^-5	0.028	INTRON dnr1
3L	12375592	3L_12375592_SNP [dm3] 3L_12382492_SNP [dm6]	G	A	1.096e^-5	0.028	INTRON Ncc69
3L	12377965	3L_12377965_SNP [dm3] 3L_12384865_SNP [dm6]	G	A	1.096e^-5	0.028	INTRON Ncc69
3L	12381521	3L_12381521_SNP [dm3] 3L_12388421_SNP [dm6]	G	A	1.096e^-5	0.028	UPSTREAM Ncc69 INTRON Ncc69
3L	12381536	3L_12381536_SNP [dm3] 3L_12388436_SNP [dm6]	T	A	1.096e^-5	0.028	UPSTREAM Ncc69 INTRON Ncc69
3L	12381567	3L_12381567_DEL [dm3] 3L_12388467_DEL [dm6]	TG	T	1.096e^-5	0.028	UPSTREAM Ncc69 INTRON Ncc69
3L	12381581	3L_12381581_INS [dm3] 3L_12388481_INS [dm6]	A	AA	1.096e^-5	0.028	UPSTREAM Ncc69 INTRON Ncc69
3L	12382060	3L_12382060_SNP [dm3] 3L_12388960_SNP [dm6]	G	C	1.096e^-5	0.028	UPSTREAM Ncc69 INTRON Ncc69
3L	12396206	3L_12396206_SNP [dm3] 3L_12403106_SNP [dm6]	C	T	1.096e^-5	0.028	UTR_3_PRIME CG32103 DOWNSTREAM CG32103
3L	12773639	3L_12773639_SNP [dm3] 3L_12780539_SNP [dm6]	C	T	1.096e^-5	0.028	SYNONYMOUS_CODING CG10969 UPSTREAM CG17666
3L	1414207	3L_1414207_SNP [dm3] 3L_1414207_SNP [dm6]	G	T	1.096e^-5	0.028	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
3L	976176	3L_976176_SNP [dm3] 3L_976176_SNP [dm6]	A	T	1.096e^-5	0.028	INTRON Glut1
3L	980335	3L_980335_SNP [dm3] 3L_980335_SNP [dm6]	T	C	1.096e^-5	0.028	NON_SYNONYMOUS_CODING Glut1 INTRON Glut1
3R	26731374	3R_26731374_SNP [dm3] 3R_30905652_SNP [dm6]	G	A	1.096e^-5	0.028	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	27399224	3R_27399224_SNP [dm3] 3R_31573502_SNP [dm6]	T	C	1.096e^-5	0.028	SYNONYMOUS_CODING gammaCOP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	11667649	X_11667649_SNP [dm3] X_11773616_SNP [dm6]	G	C	1.096e^-5	0.028	INTRON dy
X	11669222	X_11669222_SNP [dm3] X_11775189_SNP [dm6]	C	T	1.096e^-5	0.028	INTRON dy
X	11705464	X_11705464_SNP [dm3] X_11811431_SNP [dm6]	T	A	1.096e^-5	0.028	INTRON CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
X	11875996	X_11875996_SNP [dm3] X_11981963_SNP [dm6]	G	T	1.096e^-5	0.028	UPSTREAM cac INTRON cac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12050368	X_12050368_SNP [dm3] X_12156335_SNP [dm6]	G	A	1.096e^-5	0.028	INTRON Ten-a
X	12057293	X_12057293_SNP [dm3] X_12163260_SNP [dm6]	T	C	1.096e^-5	0.028	INTRON Ten-a
X	12098836	X_12098836_SNP [dm3] X_12204803_SNP [dm6]	A	G	1.096e^-5	0.028	INTRON Ten-a
X	12268319	X_12268319_SNP [dm3] X_12374286_SNP [dm6]	C	T	1.096e^-5	0.028	UTR_3_PRIME CG2577
X	12534173	X_12534173_SNP [dm3] X_12640140_SNP [dm6]	G	C	1.096e^-5	0.028	INTRON Tomosyn
X	12535022	X_12535022_SNP [dm3] X_12640989_SNP [dm6]	G	A	1.096e^-5	0.028	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
X	12658902	X_12658902_SNP [dm3] X_12764869_SNP [dm6]	T	C	1.096e^-5	0.028	UPSTREAM CG3812 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12659185	X_12659185_SNP [dm3] X_12765152_SNP [dm6]	A	T	1.096e^-5	0.028	UPSTREAM CG3812 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12659216	X_12659216_SNP [dm3] X_12765183_SNP [dm6]	G	T	1.096e^-5	0.028	UPSTREAM CG3812 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12659553	X_12659553_SNP [dm3] X_12765520_SNP [dm6]	T	C	1.096e^-5	0.028	UTR_5_PRIME CG3812 INTRON CG3812	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	14718775	X_14718775_SNP [dm3] X_14824742_SNP [dm6]	A	T	1.096e^-5	0.028	INTRON rut	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	20042917	X_20042917_SNP [dm3] X_20148884_SNP [dm6]	C	T	1.096e^-5	0.028	INTRON CG9572
X	5992199	X_5992199_SNP [dm3] X_6098166_SNP [dm6]	G	A	1.096e^-5	0.028	INTRON Nep1	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	9284084	X_9284084_SNP [dm3] X_9390051_SNP [dm6]	G	A	1.096e^-5	0.028	INTRON mgl
X	9284085	X_9284085_INS [dm3] X_9390052_INS [dm6]	C	CAA	1.096e^-5	0.028	INTRON mgl
X	9284088	X_9284088_INS [dm3] X_9390055_INS [dm6]	T	TATCTACAACCTACAA...	1.096e^-5	0.028	INTRON mgl
X	9284090	X_9284090_SNP [dm3] X_9390057_SNP [dm6]	G	C	1.096e^-5	0.028	INTRON mgl
2R	15654724	2R_15654724_SNP [dm3] 2R_19767219_SNP [dm6]	A	C	1.103e^-5	0.028	UPSTREAM 5SrRNA:CR33353 INTERGENIC
X	6089979	X_6089979_SNP [dm3] X_6195946_SNP [dm6]	G	T	1.108e^-5	0.028	NON_SYNONYMOUS_CODING CG32750 DOWNSTREAM CG32751
2R	2808069	2R_2808069_SNP [dm3] 2R_6920564_SNP [dm6]	G	A	1.125e^-5	0.028	UTR_3_PRIME CG30158	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	2808073	2R_2808073_SNP [dm3] 2R_6920568_SNP [dm6]	C	A	1.125e^-5	0.028	UTR_3_PRIME CG30158	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13959560	2R_13959560_SNP [dm3] 2R_18072055_SNP [dm6]	G	T	1.126e^-5	0.028	INTRON CG34386
2L	3524785	2L_3524785_SNP [dm3] 2L_3524785_SNP [dm6]	C	T	1.129e^-5	0.028	UPSTREAM Sr-CIV & 1 other INTERGENIC
2L	13021824	2L_13021824_SNP [dm3] 2L_13021824_SNP [dm6]	C	A	1.141e^-5	0.029	UPSTREAM A16 DOWNSTREAM CG9932 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7545144	2L_7545144_SNP [dm3] 2L_7545144_SNP [dm6]	C	G	1.151e^-5	0.029	UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4420455	2L_4420455_SNP [dm3] 2L_4420455_SNP [dm6]	T	A	1.154e^-5	0.029	INTRON CG15431
2R	10890318	2R_10890318_SNP [dm3] 2R_15002813_SNP [dm6]	G	C	1.155e^-5	0.029	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	1232262	2L_1232262_SNP [dm3] 2L_1232262_SNP [dm6]	C	T	1.160e^-5	0.029	INTERGENIC
2R	11625526	2R_11625526_INS [dm3] 2R_15738021_INS [dm6]	T	TT	1.165e^-5	0.029	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18191570	X_18191570_SNP [dm3] X_18297537_SNP [dm6]	T	C	1.165e^-5	0.029	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	18191626	X_18191626_SNP [dm3] X_18297593_SNP [dm6]	C	A	1.165e^-5	0.029	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	2791996	2R_2791996_SNP [dm3] 2R_6904491_SNP [dm6]	C	A	1.172e^-5	0.029	INTRON CG30158	TF binding site mE1_TFBS_chinmo
3L	10874758	3L_10874758_SNP [dm3] 3L_10881658_SNP [dm6]	C	T	1.176e^-5	0.029	NON_SYNONYMOUS_CODING CG6409	TF binding site mE1_TFBS_chinmo
3L	10438861	3L_10438861_INS [dm3] 3L_10445761_INS [dm6]	T	TTT	1.177e^-5	0.029	INTERGENIC
X	21862019	X_21862019_SNP [dm3] X_22460183_SNP [dm6]	G	T	1.180e^-5	0.029	INTRON CG14619
3L	1270144	3L_1270144_SNP [dm3] 3L_1270144_SNP [dm6]	G	T	1.180e^-5	0.029	INTRON CG9134
X	20444924	X_20444924_SNP [dm3] X_20573897_SNP [dm6]	C	T	1.189e^-5	0.029	UPSTREAM CG42580 INTERGENIC
2L	5104555	2L_5104555_DEL [dm3] 2L_5104555_DEL [dm6]	CAGGATA	C	1.191e^-5	0.029	INTRON Msp300
X	19562049	X_19562049_DEL [dm3] X_19668016_DEL [dm6]	TACTCACT	T	1.192e^-5	0.029	UPSTREAM CR44512 INTRON Zw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10886417	2L_10886417_SNP [dm3] 2L_10886417_SNP [dm6]	C	A	1.193e^-5	0.029	UPSTREAM CR44490 INTERGENIC
2L	7544663	2L_7544663_SNP [dm3] 2L_7544663_SNP [dm6]	C	G	1.195e^-5	0.029	UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	16446436	2R_16446436_SNP [dm3] 2R_20558931_SNP [dm6]	C	T	1.197e^-5	0.029	SYNONYMOUS_CODING lms DOWNSTREAM Mgat1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	797019	2R_797019_DEL [dm3] 2R_4909514_DEL [dm6]	GG	G	1.198e^-5	0.029	INTERGENIC
3L	13106910	3L_13106910_SNP [dm3] 3L_13113810_SNP [dm6]	C	T	1.201e^-5	0.029	UPSTREAM trn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18102164	2R_18102164_SNP [dm3] 2R_22214659_SNP [dm6]	T	G	1.204e^-5	0.029	INTRON ari-2	TF binding site BDTNP1_TFBS_dl
2R	17080646	2R_17080646_SNP [dm3] 2R_21193141_SNP [dm6]	A	G	1.211e^-5	0.029	UPSTREAM Lapsyn DOWNSTREAM tud INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	17080657	2R_17080657_SNP [dm3] 2R_21193152_SNP [dm6]	T	C	1.211e^-5	0.029	UPSTREAM Lapsyn DOWNSTREAM tud INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	17080704	2R_17080704_SNP [dm3] 2R_21193199_SNP [dm6]	T	C	1.211e^-5	0.029	UPSTREAM Lapsyn DOWNSTREAM tud INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	17080879	2R_17080879_SNP [dm3] 2R_21193374_SNP [dm6]	C	T	1.211e^-5	0.029	UPSTREAM Lapsyn DOWNSTREAM tud INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	1543865	3L_1543865_SNP [dm3] 3L_1543865_SNP [dm6]	C	G	1.211e^-5	0.029	NON_SYNONYMOUS_CODING CG7852 UTR_3_PRIME CG7852 DOWNSTREAM CG32313	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12660040	X_12660040_INS [dm3] X_12766007_INS [dm6]	T	TCCCTACTG	1.211e^-5	0.029	UPSTREAM CG3812 INTRON CG3812	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	789269	X_789269_SNP [dm3] X_895236_SNP [dm6]	C	T	1.211e^-5	0.029	DOWNSTREAM CG11663 INTRON CG43867
X	9284083	X_9284083_SNP [dm3] X_9390050_SNP [dm6]	A	T	1.211e^-5	0.029	INTRON mgl
3L	11926530	3L_11926530_SNP [dm3] 3L_11933430_SNP [dm6]	T	A	1.221e^-5	0.03	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9680189	3R_9680189_SNP [dm3] 3R_13854467_SNP [dm6]	C	T	1.247e^-5	0.03	DOWNSTREAM CG14362 INTERGENIC
3R	9680259	3R_9680259_SNP [dm3] 3R_13854537_SNP [dm6]	G	A	1.247e^-5	0.03	DOWNSTREAM CG14362 INTERGENIC
X	4293670	X_4293670_SNP [dm3] X_4399637_SNP [dm6]	A	T	1.247e^-5	0.03	INTRON CR32773
2L	10827747	2L_10827747_SNP [dm3] 2L_10827747_SNP [dm6]	G	T	1.248e^-5	0.03	UPSTREAM Nos INTRON Nos
X	20759057	X_20759057_DEL [dm3] X_20888030_DEL [dm6]	AATGAA	A	1.249e^-5	0.03	INTRON shakB
3L	8269760	3L_8269760_SNP [dm3] 3L_8276660_SNP [dm6]	A	G	1.250e^-5	0.03	INTRON Dscam4
3L	8269819	3L_8269819_SNP [dm3] 3L_8276719_SNP [dm6]	G	A	1.250e^-5	0.03	INTRON Dscam4
2L	17865430	2L_17865430_SNP [dm3] 2L_17865430_SNP [dm6]	T	A	1.251e^-5	0.03	INTRON CadN2
2L	6155457	2L_6155457_SNP [dm3] 2L_6155457_SNP [dm6]	A	G	1.266e^-5	0.03	UPSTREAM CG31639 INTERGENIC
2R	2372999	2R_2372999_SNP [dm3] 2R_6485494_SNP [dm6]	A	G	1.269e^-5	0.03	INTERGENIC	transposable element FlyBase
X	4294108	X_4294108_SNP [dm3] X_4400075_SNP [dm6]	G	C	1.271e^-5	0.03	INTRON CR32773
2L	1372182	2L_1372182_SNP [dm3] 2L_1372182_SNP [dm6]	G	T	1.276e^-5	0.03	INTERGENIC
2L	2332579	2L_2332579_SNP [dm3] 2L_2332579_SNP [dm6]	G	T	1.276e^-5	0.03	INTRON CG9967 & 1 other
2L	17862477	2L_17862477_SNP [dm3] 2L_17862477_SNP [dm6]	A	C	1.279e^-5	0.03	INTRON CadN2
2R	6148794	2R_6148794_SNP [dm3] 2R_10261289_SNP [dm6]	T	C	1.280e^-5	0.03	DOWNSTREAM CR30009 & 1 other INTERGENIC
3L	850881	3L_850881_SNP [dm3] 3L_850881_SNP [dm6]	G	A	1.284e^-5	0.03	SYNONYMOUS_CODING CG13889 UPSTREAM CG13890	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	13610945	2L_13610945_SNP [dm3] 2L_13610945_SNP [dm6]	T	A	1.288e^-5	0.03	DOWNSTREAM mir-2489 INTRON kuz
2R	17333289	2R_17333289_SNP [dm3] 2R_21445784_SNP [dm6]	C	T	1.288e^-5	0.03	INTRON Sdc
2R	7613926	2R_7613926_SNP [dm3] 2R_11726421_SNP [dm6]	C	T	1.288e^-5	0.03	DOWNSTREAM pyr INTERGENIC	TF binding site mE1_TFBS_cad
3L	1019317	3L_1019317_SNP [dm3] 3L_1019317_SNP [dm6]	T	A	1.288e^-5	0.03	INTRON trio	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12682605	3L_12682605_SNP [dm3] 3L_12689505_SNP [dm6]	T	C	1.288e^-5	0.03	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	12972288	3L_12972288_SNP [dm3] 3L_12979188_SNP [dm6]	G	C	1.288e^-5	0.03	INTERGENIC
3L	7927386	3L_7927386_SNP [dm3] 3L_7934286_SNP [dm6]	A	T	1.288e^-5	0.03	UPSTREAM syd INTRON syd	TF binding site mE1_TFBS_cad
3L	7999758	3L_7999758_SNP [dm3] 3L_8006658_SNP [dm6]	G	A	1.288e^-5	0.03	INTRON nmo
3L	8001537	3L_8001537_SNP [dm3] 3L_8008437_SNP [dm6]	G	A	1.288e^-5	0.03	INTRON nmo
3L	8001551	3L_8001551_SNP [dm3] 3L_8008451_SNP [dm6]	G	A	1.288e^-5	0.03	INTRON nmo
3L	8054744	3L_8054744_SNP [dm3] 3L_8061644_SNP [dm6]	A	G	1.288e^-5	0.03	UPSTREAM tRNA:CR32360 INTERGENIC
3L	8973918	3L_8973918_DEL [dm3] 3L_8980818_DEL [dm6]	CTGCCATCCGGC...	C	1.288e^-5	0.03	UPSTREAM CG5644 & 1 other INTERGENIC
3L	8973941	3L_8973941_DEL [dm3] 3L_8980841_DEL [dm6]	GCAATTT	G	1.288e^-5	0.03	UPSTREAM CG5644 & 1 other INTERGENIC
3L	8974234	3L_8974234_SNP [dm3] 3L_8981134_SNP [dm6]	T	G	1.288e^-5	0.03	UPSTREAM CG13314 INTERGENIC
3L	8974757	3L_8974757_SNP [dm3] 3L_8981657_SNP [dm6]	A	T	1.288e^-5	0.03	UPSTREAM CG13314 DOWNSTREAM Galk INTERGENIC
3L	8975287	3L_8975287_SNP [dm3] 3L_8982187_SNP [dm6]	A	T	1.288e^-5	0.03	UPSTREAM CG13314 DOWNSTREAM Galk INTRON CG13314
X	20957176	X_20957176_SNP [dm3] X_21086149_SNP [dm6]	T	A	1.288e^-5	0.03	INTERGENIC
3L	12379882	3L_12379882_SNP [dm3] 3L_12386782_SNP [dm6]	G	A	1.294e^-5	0.03	INTRON Ncc69	TF binding site mE1_TFBS_cnc
X	12659151	X_12659151_SNP [dm3] X_12765118_SNP [dm6]	T	A	1.294e^-5	0.03	UPSTREAM CG3812 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12659156	X_12659156_SNP [dm3] X_12765123_SNP [dm6]	A	T	1.294e^-5	0.03	UPSTREAM CG3812 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12705778	X_12705778_SNP [dm3] X_12811745_SNP [dm6]	T	G	1.294e^-5	0.03	INTRON Pde9
3L	5633193	3L_5633193_SNP [dm3] 3L_5640093_SNP [dm6]	C	T	1.296e^-5	0.03	INTRON Blimp-1
3L	2704674	3L_2704674_SNP [dm3] 3L_2704674_SNP [dm6]	T	A	1.301e^-5	0.03	INTRON Fife
X	4244292	X_4244292_SNP [dm3] X_4350259_SNP [dm6]	A	T	1.303e^-5	0.03	INTRON norpA
3L	977281	3L_977281_SNP [dm3] 3L_977281_SNP [dm6]	C	T	1.315e^-5	0.03	INTRON Glut1
3L	12035094	3L_12035094_SNP [dm3] 3L_12041994_SNP [dm6]	T	C	1.316e^-5	0.03	UPSTREAM CG6793 INTRON rols
2L	2832232	2L_2832232_SNP [dm3] 2L_2832232_SNP [dm6]	T	G	1.317e^-5	0.03	INTERGENIC
3L	14618237	3L_14618237_SNP [dm3] 3L_14625137_SNP [dm6]	T	C	1.327e^-5	0.03	INTRON CG9628	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	6958576	3L_6958576_SNP [dm3] 3L_6965476_SNP [dm6]	T	G	1.327e^-5	0.03	SYNONYMOUS_CODING CG10064 UPSTREAM sgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20466593	2L_20466593_SNP [dm3] 2L_20466593_SNP [dm6]	T	A	1.333e^-5	0.03	INTRON CR44980
3L	939543	3L_939543_SNP [dm3] 3L_939543_SNP [dm6]	C	T	1.337e^-5	0.03	INTRON Glut1
2L	13910148	2L_13910148_SNP [dm3] 2L_13910148_SNP [dm6]	C	G	1.357e^-5	0.031	SYNONYMOUS_CODING Ance-2 DOWNSTREAM Ance	TF binding site mE1_TFBS_cad
2L	13910444	2L_13910444_SNP [dm3] 2L_13910444_SNP [dm6]	T	C	1.357e^-5	0.031	NON_SYNONYMOUS_CODING Ance-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17879093	3R_17879093_DEL [dm3] 3R_22053371_DEL [dm6]	GTCTCCGGCCCCCGGAA...	G	1.374e^-5	0.031	INTRON how	regulatory region REDfly_CRMs
3L	12381595	3L_12381595_SNP [dm3] 3L_12388495_SNP [dm6]	T	A	1.384e^-5	0.031	UPSTREAM Ncc69 INTRON Ncc69
X	13734594	X_13734594_SNP [dm3] X_13840561_SNP [dm6]	T	A	1.384e^-5	0.031	UPSTREAM AMPdeam INTRON AMPdeam
X	11709766	X_11709766_SNP [dm3] X_11815733_SNP [dm6]	C	G	1.386e^-5	0.031	UTR_5_PRIME CG1578 INTRON CG1578	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13900626	2L_13900626_SNP [dm3] 2L_13900626_SNP [dm6]	A	T	1.394e^-5	0.032	SPLICE_SITE_REGION Smg5 INTRON Smg5
3L	7659983	3L_7659983_SNP [dm3] 3L_7666883_SNP [dm6]	C	T	1.399e^-5	0.032	NON_SYNONYMOUS_CODING Ank2 INTRON CG32373 & 2 others	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7684894	3L_7684894_SNP [dm3] 3L_7691794_SNP [dm6]	G	A	1.399e^-5	0.032	NON_SYNONYMOUS_CODING Ank2 INTRON CG32373 & 2 others
X	12280461	X_12280461_SNP [dm3] X_12386428_SNP [dm6]	T	A	1.399e^-5	0.032	INTERGENIC
3L	12849176	3L_12849176_SNP [dm3] 3L_12856076_SNP [dm6]	G	T	1.412e^-5	0.032	SYNONYMOUS_CODING Ent3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12849191	3L_12849191_SNP [dm3] 3L_12856091_SNP [dm6]	C	A	1.412e^-5	0.032	SYNONYMOUS_CODING Ent3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7577076	2R_7577076_SNP [dm3] 2R_11689571_SNP [dm6]	T	C	1.417e^-5	0.032	SYNONYMOUS_CODING wal	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17440826	2R_17440826_SNP [dm3] 2R_21553321_SNP [dm6]	A	G	1.425e^-5	0.032	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8528440	2R_8528440_SNP [dm3] 2R_12640935_SNP [dm6]	T	G	1.425e^-5	0.032	UTR_3_PRIME CG8785 DOWNSTREAM Iswi	TF binding site mE1_TFBS_cad
X	12660043	X_12660043_INS [dm3] X_12766010_INS [dm6]	T	TCTTAGTT	1.425e^-5	0.032	UPSTREAM CG3812 INTRON CG3812	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19015398	X_19015398_SNP [dm3] X_19121365_SNP [dm6]	G	A	1.441e^-5	0.032	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19888808	2L_19888808_SNP [dm3] 2L_19888808_SNP [dm6]	G	A	1.445e^-5	0.032	INTRON sick	TF binding site mE1_TFBS_chinmo
X	4295088	X_4295088_SNP [dm3] X_4401055_SNP [dm6]	T	A	1.446e^-5	0.032	INTRON CR32773
2L	3757404	2L_3757404_SNP [dm3] 2L_3757404_SNP [dm6]	C	A	1.449e^-5	0.032	UTR_5_PRIME CG43707
X	9983825	X_9983825_INS [dm3] X_10089792_INS [dm6]	A	AA	1.457e^-5	0.032	INTRON RhoU	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6632674	2L_6632674_SNP [dm3] 2L_6632674_SNP [dm6]	T	C	1.468e^-5	0.033	UPSTREAM Oatp26F DOWNSTREAM CG31635 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	9747582	2R_9747582_SNP [dm3] 2R_13860077_SNP [dm6]	C	T	1.475e^-5	0.033	SYNONYMOUS_CODING Uba3 DOWNSTREAM CG16935	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7368841	2L_7368841_SNP [dm3] 2L_7368841_SNP [dm6]	C	T	1.476e^-5	0.033	DOWNSTREAM CR44063 INTRON Wnt10
X	18993484	X_18993484_SNP [dm3] X_19099451_SNP [dm6]	G	T	1.476e^-5	0.033	INTERGENIC
3R	23478290	3R_23478290_SNP [dm3] 3R_27652568_SNP [dm6]	T	C	1.480e^-5	0.033	UPSTREAM RpS10a INTRON tau	TF binding site mE1_TFBS_bab1
2R	20871480	2R_20871480_SNP [dm3] 2R_24983957_SNP [dm6]	C	A	1.492e^-5	0.033	UPSTREAM emp INTRON emp	TF binding site mE1_TFBS_inv
3L	13117540	3L_13117540_SNP [dm3] 3L_13124440_SNP [dm6]	G	A	1.492e^-5	0.033	INTERGENIC
3R	18950193	3R_18950193_SNP [dm3] 3R_23124471_SNP [dm6]	C	G	1.494e^-5	0.033	SYNONYMOUS_CODING CG31365 DOWNSTREAM CenB1A	TF binding site mE1_TFBS_sens
2R	17440804	2R_17440804_SNP [dm3] 2R_21553299_SNP [dm6]	C	A	1.495e^-5	0.033	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10039259	3L_10039259_SNP [dm3] 3L_10046159_SNP [dm6]	A	G	1.496e^-5	0.033	INTRON dpr6
3L	10039289	3L_10039289_SNP [dm3] 3L_10046189_SNP [dm6]	G	C	1.496e^-5	0.033	INTRON dpr6
2L	12011938	2L_12011938_SNP [dm3] 2L_12011938_SNP [dm6]	C	T	1.500e^-5	0.033	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	14848412	2R_14848412_SNP [dm3] 2R_18960907_SNP [dm6]	G	A	1.515e^-5	0.033	INTERGENIC
2R	18616670	2R_18616670_SNP [dm3] 2R_22729165_SNP [dm6]	G	A	1.515e^-5	0.033	UTR_5_PRIME jbug INTRON jbug	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7109966	2R_7109966_SNP [dm3] 2R_11222461_SNP [dm6]	T	C	1.515e^-5	0.033	UTR_3_PRIME Syx6 UPSTREAM CG7737 DOWNSTREAM Syx6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7999804	3L_7999804_SNP [dm3] 3L_8006704_SNP [dm6]	T	A	1.515e^-5	0.033	INTRON nmo
3L	8054790	3L_8054790_SNP [dm3] 3L_8061690_SNP [dm6]	T	A	1.515e^-5	0.033	UPSTREAM tRNA:CR32360 INTERGENIC
3L	4721683	3L_4721683_SNP [dm3] 3L_4721683_SNP [dm6]	C	T	1.520e^-5	0.033	INTRON RhoGEF64C
X	11819410	X_11819410_SNP [dm3] X_11925377_SNP [dm6]	T	A	1.522e^-5	0.033	UPSTREAM Sclp INTERGENIC
3L	1461464	3L_1461464_SNP [dm3] 3L_1461464_SNP [dm6]	C	A	1.524e^-5	0.033	INTRON Ptp61F EXON CR44842	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5116150	X_5116150_INS [dm3] X_5222117_INS [dm6]	T	TACTAGCATCGAACAT...	1.535e^-5	0.033	INTRON CG15465 & 1 other
2L	1722304	2L_1722304_SNP [dm3] 2L_1722304_SNP [dm6]	A	G	1.536e^-5	0.033	INTRON Rim2
2R	10929832	2R_10929832_SNP [dm3] 2R_15042327_SNP [dm6]	G	A	1.538e^-5	0.033	DOWNSTREAM hbs INTERGENIC
3L	7528459	3L_7528459_SNP [dm3] 3L_7535359_SNP [dm6]	C	T	1.543e^-5	0.033	SYNONYMOUS_CODING lqf
3L	4565576	3L_4565576_SNP [dm3] 3L_4565576_SNP [dm6]	T	G	1.544e^-5	0.033	INTRON CG42540	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8001811	3L_8001811_DEL [dm3] 3L_8008711_DEL [dm6]	GCCTGAGAAGAGAATCAACT...	G	1.544e^-5	0.033	INTRON nmo
2L	5379427	2L_5379427_SNP [dm3] 2L_5379427_SNP [dm6]	G	C	1.546e^-5	0.033	EXON CR42850
X	18935861	X_18935861_SNP [dm3] X_19041828_SNP [dm6]	G	C	1.551e^-5	0.033	INTERGENIC
2L	13913533	2L_13913533_SNP [dm3] 2L_13913533_SNP [dm6]	T	C	1.556e^-5	0.033	DOWNSTREAM Acyp INTERGENIC	TF binding site mE1_TFBS_cad
2L	17855095	2L_17855095_SNP [dm3] 2L_17855095_SNP [dm6]	G	T	1.567e^-5	0.034	INTRON CadN2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17855097	2L_17855097_SNP [dm3] 2L_17855097_SNP [dm6]	A	T	1.573e^-5	0.034	INTRON CadN2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5060829	3L_5060829_SNP [dm3] 3L_5060829_SNP [dm6]	A	C	1.573e^-5	0.034	INTRON Con
2L	21966467	2L_21966467_SNP [dm3] 2L_21966467_SNP [dm6]	C	T	1.575e^-5	0.034	INTERGENIC
2L	14483117	2L_14483117_SNP [dm3] 2L_14483117_SNP [dm6]	A	G	1.587e^-5	0.034	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8393432	X_8393432_DEL [dm3] X_8499399_DEL [dm6]	TA	T	1.587e^-5	0.034	INTRON CG33181
X	4292675	X_4292675_INS [dm3] X_4398642_INS [dm6]	T	TCGTTGTTGTCGT...	1.592e^-5	0.034	INTRON CR32773
3L	8390378	3L_8390378_SNP [dm3] 3L_8397278_SNP [dm6]	A	C	1.593e^-5	0.034	UPSTREAM CG7120 INTRON CG7120	TF binding site BDTNP1_TFBS_twi transposable element FlyBase
3L	8390379	3L_8390379_SNP [dm3] 3L_8397279_SNP [dm6]	A	C	1.593e^-5	0.034	UPSTREAM CG7120 INTRON CG7120	TF binding site BDTNP1_TFBS_twi transposable element FlyBase
3L	3870618	3L_3870618_SNP [dm3] 3L_3870618_SNP [dm6]	A	G	1.604e^-5	0.034	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14838094	2R_14838094_SNP [dm3] 2R_18950589_SNP [dm6]	T	A	1.608e^-5	0.034	INTRON sano
3L	720264	3L_720264_SNP [dm3] 3L_720264_SNP [dm6]	G	T	1.611e^-5	0.034	INTERGENIC
3L	7684944	3L_7684944_SNP [dm3] 3L_7691844_SNP [dm6]	A	G	1.617e^-5	0.034	SYNONYMOUS_CODING Ank2 INTRON CG32373 & 2 others
2L	11379375	2L_11379375_SNP [dm3] 2L_11379375_SNP [dm6]	A	C	1.626e^-5	0.034	INTERGENIC	regulatory region REDfly_CRMs
2R	8508583	2R_8508583_SNP [dm3] 2R_12621078_SNP [dm6]	C	T	1.626e^-5	0.034	UTR_3_PRIME Galphaq
3L	8054315	3L_8054315_SNP [dm3] 3L_8061215_SNP [dm6]	G	T	1.626e^-5	0.034	UPSTREAM tRNA:CR32358 & 2 others INTERGENIC
3L	8054413	3L_8054413_SNP [dm3] 3L_8061313_SNP [dm6]	G	T	1.626e^-5	0.034	UPSTREAM tRNA:CR32359 & 1 other INTERGENIC
X	617753	X_617753_SNP [dm3] X_723720_SNP [dm6]	C	T	1.626e^-5	0.034	INTRON sdk
2L	10767564	2L_10767564_SNP [dm3] 2L_10767564_SNP [dm6]	G	A	1.633e^-5	0.034	UPSTREAM UbcD2 DOWNSTREAM CG6724 INTRON UbcD2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	18938482	2R_18938482_INS [dm3] 2R_23050959_INS [dm6]	A	AA	1.635e^-5	0.034	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7331036	2R_7331036_SNP [dm3] 2R_11443531_SNP [dm6]	T	A	1.638e^-5	0.034	INTRON qvr
X	14150064	X_14150064_SNP [dm3] X_14256031_SNP [dm6]	G	A	1.644e^-5	0.034	SYNONYMOUS_CODING mud DOWNSTREAM mud INTRON mud	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	517916	2R_517916_SNP [dm3] 2R_4630411_SNP [dm6]	A	T	1.644e^-5	0.034	INTERGENIC	transposable element FlyBase
2R	6976287	2R_6976287_INS [dm3] 2R_11088782_INS [dm6]	A	ATACACA	1.655e^-5	0.035	DOWNSTREAM CG43188 INTRON luna
2L	12759283	2L_12759283_SNP [dm3] 2L_12759283_SNP [dm6]	C	A	1.660e^-5	0.035	INTERGENIC
2R	17106619	2R_17106619_SNP [dm3] 2R_21219114_SNP [dm6]	G	A	1.677e^-5	0.035	SYNONYMOUS_CODING ASPP	TF binding site mE1_TFBS_cad
2R	10983685	2R_10983685_SNP [dm3] 2R_15096180_SNP [dm6]	T	A	1.686e^-5	0.035	INTERGENIC
2L	485182	2L_485182_SNP [dm3] 2L_485182_SNP [dm6]	C	T	1.705e^-5	0.035	INTRON ush	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	14921245	2R_14921245_SNP [dm3] 2R_19033740_SNP [dm6]	C	T	1.708e^-5	0.035	INTERGENIC
3L	16740534	3L_16740534_SNP [dm3] 3L_16747434_SNP [dm6]	C	A	1.715e^-5	0.036	INTERGENIC
X	16130193	X_16130193_SNP [dm3] X_16236160_SNP [dm6]	G	A	1.716e^-5	0.036	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	2330714	2L_2330714_SNP [dm3] 2L_2330714_SNP [dm6]	G	A	1.720e^-5	0.036	UTR_5_PRIME CG9967 INTRON CG9967 & 1 other
2R	835030	2R_835030_SNP [dm3] 2R_4947525_SNP [dm6]	A	G	1.729e^-5	0.036	INTRON Ir41a
3L	9751481	3L_9751481_SNP [dm3] 3L_9758381_SNP [dm6]	A	T	1.732e^-5	0.036	INTRON CG42268
3L	15366391	3L_15366391_SNP [dm3] 3L_15373291_SNP [dm6]	G	C	1.735e^-5	0.036	INTERGENIC
3L	15297315	3L_15297315_SNP [dm3] 3L_15304215_SNP [dm6]	G	T	1.735e^-5	0.036	UPSTREAM CG7255 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3L	6442538	3L_6442538_SNP [dm3] 3L_6449438_SNP [dm6]	T	C	1.738e^-5	0.036	INTRON CG42747
2L	17865946	2L_17865946_SNP [dm3] 2L_17865946_SNP [dm6]	T	A	1.740e^-5	0.036	INTRON CadN2
2R	18734446	2R_18734446_SNP [dm3] 2R_22846923_SNP [dm6]	C	A	1.740e^-5	0.036	SYNONYMOUS_CODING CG3649 DOWNSTREAM CG13531	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9596080	3L_9596080_INS [dm3] 3L_9602980_INS [dm6]	A	AAAG	1.741e^-5	0.036	UPSTREAM CG3280 DOWNSTREAM CG3306 INTERGENIC
2R	12964238	2R_12964238_SNP [dm3] 2R_17076733_SNP [dm6]	G	A	1.750e^-5	0.036	UPSTREAM CG30460 INTRON CG30460	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2334829	2L_2334829_SNP [dm3] 2L_2334829_SNP [dm6]	C	T	1.751e^-5	0.036	INTRON CG9967 & 1 other
3L	8975321	3L_8975321_INS [dm3] 3L_8982221_INS [dm6]	T	TT	1.755e^-5	0.036	UTR_3_PRIME Galk UPSTREAM CG13314 DOWNSTREAM Galk INTRON CG13314
2L	22113633	2L_22113633_SNP [dm3] 2L_22113633_SNP [dm6]	A	T	1.755e^-5	0.036	INTERGENIC	transposable element FlyBase
2R	10845828	2R_10845828_SNP [dm3] 2R_14958323_SNP [dm6]	T	C	1.756e^-5	0.036	START_GAINED aPKC UTR_5_PRIME aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl
X	11712309	X_11712309_DEL [dm3] X_11818276_DEL [dm6]	TTGTATGTTTGTATT...	CAACAA	1.760e^-5	0.036	UPSTREAM rudhira INTRON rudhira	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	8054782	3L_8054782_SNP [dm3] 3L_8061682_SNP [dm6]	C	G	1.778e^-5	0.036	UPSTREAM tRNA:CR32360 INTERGENIC
3R	22240695	3R_22240695_SNP [dm3] 3R_26414973_SNP [dm6]	T	C	1.780e^-5	0.036	INTRON CG5432
X	13207286	X_13207286_SNP [dm3] X_13313253_SNP [dm6]	G	A	1.780e^-5	0.036	INTRON IP3K2
2R	2483531	2R_2483531_SNP [dm3] 2R_6596026_SNP [dm6]	C	T	1.782e^-5	0.036	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	5597518	3L_5597518_INS [dm3] 3L_5604418_INS [dm6]	C	CG	1.782e^-5	0.036	UPSTREAM mthl2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run
3L	7065375	3L_7065375_INS [dm3] 3L_7072275_INS [dm6]	A	ATAAAAATCAAAAAA...	1.782e^-5	0.036	INTRON CG8641
X	20362878	X_20362878_SNP [dm3] X_20491851_SNP [dm6]	G	A	1.789e^-5	0.036	UPSTREAM RhoGAP19D INTRON RhoGAP19D
3L	8975426	3L_8975426_SNP [dm3] 3L_8982326_SNP [dm6]	A	C	1.790e^-5	0.036	UTR_3_PRIME Galk UPSTREAM CG13314 DOWNSTREAM Galk INTRON CG13314	TF binding site mE1_TFBS_HSA
3L	3543488	3L_3543488_SNP [dm3] 3L_3543488_SNP [dm6]	C	G	1.792e^-5	0.036	UPSTREAM Eip63E INTRON Eip63E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	9818747	2R_9818747_SNP [dm3] 2R_13931242_SNP [dm6]	T	A	1.795e^-5	0.036	INTRON shot
X	5835890	X_5835890_DEL [dm3] X_5941857_DEL [dm6]	AA	A	1.801e^-5	0.036	UPSTREAM CG12728 DOWNSTREAM CG3726 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17851481	2L_17851481_SNP [dm3] 2L_17851481_SNP [dm6]	A	C	1.803e^-5	0.036	INTRON CadN2
2R	17080592	2R_17080592_SNP [dm3] 2R_21193087_SNP [dm6]	G	A	1.808e^-5	0.036	UPSTREAM Lapsyn DOWNSTREAM tud INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	12892441	3L_12892441_SNP [dm3] 3L_12899341_SNP [dm6]	A	G	1.812e^-5	0.036	INTERGENIC
2L	5595558	2L_5595558_SNP [dm3] 2L_5595558_SNP [dm6]	G	A	1.822e^-5	0.037	INTERGENIC
X	1164367	X_1164367_SNP [dm3] X_1270334_SNP [dm6]	C	A	1.824e^-5	0.037	INTRON Atf3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15132897	2L_15132897_SNP [dm3] 2L_15132897_SNP [dm6]	C	A	1.827e^-5	0.037	UPSTREAM tRNA:L:35C INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	5308105	2R_5308105_SNP [dm3] 2R_9420600_SNP [dm6]	G	A	1.830e^-5	0.037	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	5308636	2R_5308636_SNP [dm3] 2R_9421131_SNP [dm6]	T	G	1.830e^-5	0.037	DOWNSTREAM CG13955 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14038330	2L_14038330_SNP [dm3] 2L_14038330_SNP [dm6]	G	C	1.834e^-5	0.037	UPSTREAM CR45284 INTERGENIC
X	11724926	X_11724926_SNP [dm3] X_11830893_SNP [dm6]	A	G	1.838e^-5	0.037	SYNONYMOUS_CODING rudhira INTRON rudhira
X	8363690	X_8363690_INS [dm3] X_8469657_INS [dm6]	A	ACCTATATA	1.840e^-5	0.037	UPSTREAM CG12116 INTRON CG33223
X	14905640	X_14905640_SNP [dm3] X_15011607_SNP [dm6]	G	A	1.846e^-5	0.037	INTRON hiw	TF binding site mE1_TFBS_chinmo
2R	16454285	2R_16454285_SNP [dm3] 2R_20566780_SNP [dm6]	A	T	1.847e^-5	0.037	INTRON qsm
2R	16454286	2R_16454286_SNP [dm3] 2R_20566781_SNP [dm6]	A	T	1.847e^-5	0.037	INTRON qsm
2L	13910809	2L_13910809_SNP [dm3] 2L_13910809_SNP [dm6]	C	T	1.848e^-5	0.037	SYNONYMOUS_CODING Ance-2	TF binding site mE1_TFBS_cad
3L	3297721	3L_3297721_SNP [dm3] 3L_3297721_SNP [dm6]	G	A	1.883e^-5	0.037	SYNONYMOUS_CODING CG12009
3L	13401602	3L_13401602_SNP [dm3] 3L_13408502_SNP [dm6]	T	A	1.883e^-5	0.037	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9811550	2L_9811550_SNP [dm3] 2L_9811550_SNP [dm6]	T	C	1.896e^-5	0.037	INTRON nAChRalpha6
3L	9151352	3L_9151352_DEL [dm3] 3L_9158252_DEL [dm6]	TAGT	T	1.911e^-5	0.038	INTRON Rdl
3L	10198522	3L_10198522_INS [dm3] 3L_10205422_INS [dm6]	T	TAAGAGATC	1.928e^-5	0.038	UPSTREAM CR44538 INTERGENIC
X	11712642	X_11712642_SNP [dm3] X_11818609_SNP [dm6]	G	C	1.935e^-5	0.038	INTRON rudhira	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
X	18191637	X_18191637_SNP [dm3] X_18297604_SNP [dm6]	C	A	1.956e^-5	0.039	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	8701759	X_8701759_SNP [dm3] X_8807726_SNP [dm6]	C	T	1.962e^-5	0.039	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2R	12512823	2R_12512823_SNP [dm3] 2R_16625318_SNP [dm6]	T	A	1.979e^-5	0.039	UTR_3_PRIME Alk DOWNSTREAM CG5065 & 1 other
X	20342094	X_20342094_SNP [dm3] X_20471067_SNP [dm6]	C	T	1.981e^-5	0.039	UTR_3_PRIME RhoGAP19D DOWNSTREAM RhoGAP19D	TF binding site BDTNP1_TFBS_dl
2L	6503748	2L_6503748_SNP [dm3] 2L_6503748_SNP [dm6]	A	C	2.000e^-5	0.039	INTRON CG31637
2R	17678545	2R_17678545_SNP [dm3] 2R_21791040_SNP [dm6]	C	T	2.017e^-5	0.039	NON_SYNONYMOUS_CODING lox2
2L	17865190	2L_17865190_SNP [dm3] 2L_17865190_SNP [dm6]	G	T	2.032e^-5	0.04	INTRON CadN2
2L	5104889	2L_5104889_SNP [dm3] 2L_5104889_SNP [dm6]	C	T	2.033e^-5	0.04	INTRON Msp300
2L	6231320	2L_6231320_SNP [dm3] 2L_6231320_SNP [dm6]	T	G	2.051e^-5	0.04	UPSTREAM CR44823 INTERGENIC
3L	5195295	3L_5195295_SNP [dm3] 3L_5202195_SNP [dm6]	T	A	2.055e^-5	0.04	UPSTREAM shep INTRON shep
2L	6783807	2L_6783807_SNP [dm3] 2L_6783807_SNP [dm6]	T	G	2.063e^-5	0.04	INTRON nrv1
2L	11004636	2L_11004636_SNP [dm3] 2L_11004636_SNP [dm6]	G	A	2.064e^-5	0.04	UPSTREAM Nup154 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	14242020	X_14242020_SNP [dm3] X_14347987_SNP [dm6]	T	A	2.065e^-5	0.04	INTRON dpr8
X	20362816	X_20362816_DEL [dm3] X_20491789_DEL [dm6]	GGACTCTTAACCCA...	G	2.067e^-5	0.04	UPSTREAM RhoGAP19D INTRON RhoGAP19D
2L	12752284	2L_12752284_SNP [dm3] 2L_12752284_SNP [dm6]	T	A	2.068e^-5	0.04	INTERGENIC
3L	10441581	3L_10441581_SNP [dm3] 3L_10448481_SNP [dm6]	T	C	2.070e^-5	0.04	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	1454368	3L_1454368_DEL [dm3] 3L_1454368_DEL [dm6]	CTC	C	2.084e^-5	0.04	INTRON Ptp61F
2L	13913297	2L_13913297_SNP [dm3] 2L_13913297_SNP [dm6]	A	T	2.086e^-5	0.04	DOWNSTREAM Acyp INTERGENIC	TF binding site mE1_TFBS_cad
2L	18467509	2L_18467509_SNP [dm3] 2L_18467509_SNP [dm6]	C	T	2.086e^-5	0.04	INTRON let-7-C
2R	10842998	2R_10842998_SNP [dm3] 2R_14955493_SNP [dm6]	A	T	2.106e^-5	0.041	INTRON aPKC	TF binding site mE1_TFBS_HSA
2R	10842999	2R_10842999_SNP [dm3] 2R_14955494_SNP [dm6]	A	G	2.106e^-5	0.041	INTRON aPKC	TF binding site mE1_TFBS_HSA
2R	10843027	2R_10843027_SNP [dm3] 2R_14955522_SNP [dm6]	T	A	2.106e^-5	0.041	INTRON aPKC	TF binding site mE1_TFBS_HSA
2L	19879311	2L_19879311_SNP [dm3] 2L_19879311_SNP [dm6]	C	G	2.116e^-5	0.041	INTRON sick
2L	2695207	2L_2695207_SNP [dm3] 2L_2695207_SNP [dm6]	A	C	2.123e^-5	0.041	DOWNSTREAM CG15398 INTRON CG31690
2R	19775119	2R_19775119_SNP [dm3] 2R_23887596_SNP [dm6]	A	T	2.123e^-5	0.041	INTRON CG5597
3L	6446660	3L_6446660_SNP [dm3] 3L_6453560_SNP [dm6]	G	T	2.124e^-5	0.041	INTRON CG42747
2R	20374740	2R_20374740_SNP [dm3] 2R_24487217_SNP [dm6]	A	G	2.132e^-5	0.041	INTRON CG13579	TF binding site mE1_TFBS_cad
2L	10078072	2L_10078072_SNP [dm3] 2L_10078072_SNP [dm6]	G	T	2.137e^-5	0.041	INTRON CG44153
2L	8258702	2L_8258702_SNP [dm3] 2L_8258702_SNP [dm6]	A	C	2.140e^-5	0.041	UTR_3_PRIME Btk29A UPSTREAM mir-2b-1 DOWNSTREAM Btk29A
2R	19443920	2R_19443920_SNP [dm3] 2R_23556397_SNP [dm6]	T	C	2.140e^-5	0.041	UPSTREAM ItgalphaPS5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	21020090	2L_21020090_SNP [dm3] 2L_21020090_SNP [dm6]	G	C	2.149e^-5	0.041	INTRON CG42238
2L	4489652	2L_4489652_SNP [dm3] 2L_4489652_SNP [dm6]	G	C	2.159e^-5	0.041	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	7543612	2L_7543612_DEL [dm3] 2L_7543612_DEL [dm6]	CAAATCGCAATCC...	C	2.172e^-5	0.041	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	6354514	X_6354514_INS [dm3] X_6460481_INS [dm6]	A	ACAGAA	2.173e^-5	0.041	INTRON CG42340
2R	18090884	2R_18090884_SNP [dm3] 2R_22203379_SNP [dm6]	A	G	2.177e^-5	0.041	UPSTREAM Swim DOWNSTREAM CG3292 & 1 other INTERGENIC
2R	18099325	2R_18099325_SNP [dm3] 2R_22211820_SNP [dm6]	G	T	2.177e^-5	0.041	NON_SYNONYMOUS_CODING CG11291	TF binding site mE1_TFBS_sens
X	14690374	X_14690374_SNP [dm3] X_14796341_SNP [dm6]	A	T	2.177e^-5	0.041	INTRON rut
3L	10198513	3L_10198513_INS [dm3] 3L_10205413_INS [dm6]	G	GATCT	2.192e^-5	0.042	UPSTREAM CR44538 INTERGENIC
3L	16962959	3L_16962959_INS [dm3] 3L_16969859_INS [dm6]	C	GT	2.223e^-5	0.042	UPSTREAM Exn INTERGENIC
X	17242394	X_17242394_SNP [dm3] X_17348361_SNP [dm6]	A	T	2.229e^-5	0.042	INTERGENIC
X	17242396	X_17242396_MNP [dm3] X_17348363_MNP [dm6]	AAAAA	TTTTT	2.229e^-5	0.042	INTERGENIC
3L	7266444	3L_7266444_SNP [dm3] 3L_7273344_SNP [dm6]	G	T	2.230e^-5	0.042	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad
X	5992183	X_5992183_INS [dm3] X_6098150_INS [dm6]	A	AA	2.239e^-5	0.042	INTRON Nep1	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	4295973	X_4295973_SNP [dm3] X_4401940_SNP [dm6]	T	A	2.246e^-5	0.042	INTRON CR32773	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	19522319	2R_19522319_SNP [dm3] 2R_23634796_SNP [dm6]	A	G	2.248e^-5	0.042	INTRON retn	TF binding site mE1_TFBS_cad
3L	9654280	3L_9654280_INS [dm3] 3L_9661180_INS [dm6]	C	CACC	2.250e^-5	0.042	INTRON fry	TF binding site BDTNP1_TFBS_twi
2L	3015453	2L_3015453_SNP [dm3] 2L_3015453_SNP [dm6]	G	A	2.262e^-5	0.042	SYNONYMOUS_CODING CG17265 DOWNSTREAM CG17224	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17853956	2L_17853956_SNP [dm3] 2L_17853956_SNP [dm6]	G	A	2.262e^-5	0.042	INTRON CadN2
3L	12208028	3L_12208028_SNP [dm3] 3L_12214928_SNP [dm6]	G	A	2.264e^-5	0.042	UPSTREAM app INTRON app
3R	25195404	3R_25195404_SNP [dm3] 3R_29369682_SNP [dm6]	T	C	2.264e^-5	0.042	UTR_3_PRIME CG45546	TF binding site mE1_TFBS_inv
3R	26753887	3R_26753887_SNP [dm3] 3R_30928165_SNP [dm6]	T	A	2.264e^-5	0.042	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	2121447	2R_2121447_SNP [dm3] 2R_6233942_SNP [dm6]	T	C	2.268e^-5	0.042	SYNONYMOUS_CODING bin3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5387034	2L_5387034_SNP [dm3] 2L_5387034_SNP [dm6]	A	G	2.272e^-5	0.042	UPSTREAM CR44745 INTERGENIC	TF binding site mE1_TFBS_inv
2R	519465	2R_519465_SNP [dm3] 2R_4631960_SNP [dm6]	A	G	2.276e^-5	0.042	INTERGENIC	transposable element FlyBase
X	12894159	X_12894159_SNP [dm3] X_13000126_SNP [dm6]	A	T	2.276e^-5	0.042	INTRON rad
X	11356417	X_11356417_SNP [dm3] X_11462384_SNP [dm6]	G	A	2.297e^-5	0.043	INTRON CG43155

By genomic position
Variant impact
Gene name

Microbiota_OTU022 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results