DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.909e^-11)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.026401
In_2L_t	0.066481
In_2R_NS	0.081749

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

5955 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	18454209	2R_18454209_DEL [dm3] 2R_22566704_DEL [dm6]	TATG	A	1.294e^-12	8.023e^-7	INTRON dnr1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18455276	2R_18455276_SNP [dm3] 2R_22567771_SNP [dm6]	G	T	1.294e^-12	8.023e^-7	INTRON dnr1
2R	18455328	2R_18455328_SNP [dm3] 2R_22567823_SNP [dm6]	G	A	1.294e^-12	8.023e^-7	INTRON dnr1
2R	18454239	2R_18454239_SNP [dm3] 2R_22566734_SNP [dm6]	G	A	4.589e^-12	1.707e^-6	INTRON dnr1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18454240	2R_18454240_SNP [dm3] 2R_22566735_SNP [dm6]	G	A	4.589e^-12	1.707e^-6	INTRON dnr1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2134166	2L_2134166_SNP [dm3] 2L_2134166_SNP [dm6]	G	A	5.518e^-12	1.711e^-6	INTRON GlyP
2L	13008859	2L_13008859_SNP [dm3] 2L_13008859_SNP [dm6]	G	T	9.244e^-12	2.457e^-6	SYNONYMOUS_CODING Tor
X	8111979	X_8111979_SNP [dm3] X_8217946_SNP [dm6]	A	T	1.210e^-11	2.815e^-6	INTRON sdt	TF binding site BDTNP1_TFBS_dl
2R	18450899	2R_18450899_SNP [dm3] 2R_22563394_SNP [dm6]	T	C	1.844e^-11	3.538e^-6	UTR_3_PRIME dnr1 DOWNSTREAM dnr1 & 1 other
X	8111885	X_8111885_SNP [dm3] X_8217852_SNP [dm6]	G	C	1.902e^-11	3.538e^-6	INTRON sdt	TF binding site BDTNP1_TFBS_dl
2L	13049945	2L_13049945_INS [dm3] 2L_13049945_INS [dm6]	C	CC	3.845e^-11	6.503e^-6	INTRON CG9932
X	4289262	X_4289262_SNP [dm3] X_4395229_SNP [dm6]	A	G	4.966e^-11	7.699e^-6	INTRON CR32773
X	4289517	X_4289517_SNP [dm3] X_4395484_SNP [dm6]	A	T	6.998e^-11	1.002e^-5	INTRON CR32773	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18169882	2R_18169882_SNP [dm3] 2R_22282377_SNP [dm6]	A	C	1.289e^-10	1.713e^-5	INTRON dve	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	8111915	X_8111915_SNP [dm3] X_8217882_SNP [dm6]	A	G	2.042e^-10	2.532e^-5	INTRON sdt	TF binding site BDTNP1_TFBS_dl
3L	7352965	3L_7352965_SNP [dm3] 3L_7359865_SNP [dm6]	G	T	3.304e^-10	3.616e^-5	UPSTREAM Sec63 INTRON pst
3L	7353067	3L_7353067_SNP [dm3] 3L_7359967_SNP [dm6]	T	C	3.304e^-10	3.616e^-5	NON_SYNONYMOUS_CODING pst UPSTREAM Sec63
2R	13083572	2R_13083572_SNP [dm3] 2R_17196067_SNP [dm6]	C	T	3.842e^-10	3.971e^-5	NON_SYNONYMOUS_CODING CG10950	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12005862	3L_12005862_SNP [dm3] 3L_12012762_SNP [dm6]	T	C	4.294e^-10	4.204e^-5	INTRON rols	TF binding site mE1_TFBS_cad
X	12282169	X_12282169_SNP [dm3] X_12388136_SNP [dm6]	T	C	7.907e^-10	6.826e^-5	INTERGENIC
2L	15119639	2L_15119639_SNP [dm3] 2L_15119639_SNP [dm6]	A	G	8.071e^-10	6.826e^-5	UPSTREAM CR43853 INTERGENIC
2R	15673316	2R_15673316_SNP [dm3] 2R_19785811_SNP [dm6]	G	A	8.071e^-10	6.826e^-5	EXON CR45231	regulatory region REDfly_CRMs
2L	15132399	2L_15132399_SNP [dm3] 2L_15132399_SNP [dm6]	T	C	8.895e^-10	7.195e^-5	UPSTREAM tRNA:L:35C INTERGENIC
3L	1456694	3L_1456694_SNP [dm3] 3L_1456694_SNP [dm6]	G	A	9.890e^-10	7.666e^-5	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15729032	2R_15729032_SNP [dm3] 2R_19841527_SNP [dm6]	G	A	1.103e^-9	8.208e^-5	DOWNSTREAM CG44569 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2332894	2L_2332894_SNP [dm3] 2L_2332894_SNP [dm6]	C	T	1.320e^-9	8.809e^-5	INTRON CG9967 & 1 other
X	19954569	X_19954569_SNP [dm3] X_20060536_SNP [dm6]	G	A	1.326e^-9	8.809e^-5	INTRON Dop2R
X	19954637	X_19954637_SNP [dm3] X_20060604_SNP [dm6]	C	G	1.326e^-9	8.809e^-5	INTRON Dop2R
3L	980878	3L_980878_SNP [dm3] 3L_980878_SNP [dm6]	A	T	1.413e^-9	9.063e^-5	DOWNSTREAM Glut1 INTRON Glut1	TF binding site mE1_TFBS_chinmo
X	16224721	X_16224721_SNP [dm3] X_16330688_SNP [dm6]	A	G	1.467e^-9	9.096e^-5	DOWNSTREAM CG9921 INTRON CG9919	TF binding site BDTNP1_TFBS_dl
2L	7067909	2L_7067909_SNP [dm3] 2L_7067909_SNP [dm6]	T	G	1.962e^-9	1.177e^-4	UPSTREAM CG11289 INTERGENIC
2L	18396969	2L_18396969_SNP [dm3] 2L_18396969_SNP [dm6]	C	G	2.423e^-9	1.409e^-4	INTERGENIC
2R	19265903	2R_19265903_SNP [dm3] 2R_23378380_SNP [dm6]	T	G	2.858e^-9	1.611e^-4	UPSTREAM yellow-d INTRON CG13551	TF binding site mE1_TFBS_cad
3L	7349970	3L_7349970_SNP [dm3] 3L_7356870_SNP [dm6]	G	C	3.335e^-9	1.677e^-4	UPSTREAM CTCF DOWNSTREAM pst INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1 transposable element FlyBase
3L	7350927	3L_7350927_SNP [dm3] 3L_7357827_SNP [dm6]	T	C	3.335e^-9	1.677e^-4	NON_SYNONYMOUS_CODING pst	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	7350928	3L_7350928_SNP [dm3] 3L_7357828_SNP [dm6]	T	C	3.335e^-9	1.677e^-4	NON_SYNONYMOUS_CODING pst	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	7350937	3L_7350937_SNP [dm3] 3L_7357837_SNP [dm6]	G	A	3.335e^-9	1.677e^-4	NON_SYNONYMOUS_CODING pst	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	10846051	2R_10846051_SNP [dm3] 2R_14958546_SNP [dm6]	G	T	3.454e^-9	1.691e^-4	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13018232	2L_13018232_SNP [dm3] 2L_13018232_SNP [dm6]	C	G	3.758e^-9	1.793e^-4	INTRON CG9934
2R	19264311	2R_19264311_INS [dm3] 2R_23376788_INS [dm6]	T	TT	4.170e^-9	1.939e^-4	INTRON Golgin245	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	4290218	X_4290218_SNP [dm3] X_4396185_SNP [dm6]	A	G	4.411e^-9	2.001e^-4	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18455329	2R_18455329_SNP [dm3] 2R_22567824_SNP [dm6]	T	C	4.652e^-9	2.061e^-4	INTRON dnr1
X	1165472	X_1165472_SNP [dm3] X_1271439_SNP [dm6]	A	G	5.743e^-9	2.485e^-4	INTRON Atf3	TF binding site BDTNP1_TFBS_dl
2L	16061313	2L_16061313_SNP [dm3] 2L_16061313_SNP [dm6]	A	C	6.232e^-9	2.635e^-4	INTRON beat-Ia
2R	4545151	2R_4545151_SNP [dm3] 2R_8657646_SNP [dm6]	G	C	6.376e^-9	2.636e^-4	INTRON ptc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
X	12638385	X_12638385_SNP [dm3] X_12744352_SNP [dm6]	C	A	6.674e^-9	2.699e^-4	UTR_5_PRIME CG4004 UPSTREAM CG4004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8112007	X_8112007_SNP [dm3] X_8217974_SNP [dm6]	G	A	7.770e^-9	3.076e^-4	INTRON sdt	TF binding site BDTNP1_TFBS_dl
3L	12650756	3L_12650756_DEL [dm3] 3L_12657656_DEL [dm6]	TTATTCTATGCAAATCGTAT...	T	8.188e^-9	3.109e^-4	INTERGENIC
X	10461460	X_10461460_SNP [dm3] X_10567427_SNP [dm6]	C	T	8.188e^-9	3.109e^-4	UPSTREAM CG15296 INTRON spri
2R	14982741	2R_14982741_SNP [dm3] 2R_19095236_SNP [dm6]	T	G	8.992e^-9	3.346e^-4	SYNONYMOUS_CODING Ir56a INTRON 5-HT1A
2R	725781	2R_725781_SNP [dm3] 2R_4838276_SNP [dm6]	G	C	1.060e^-8	3.868e^-4	INTERGENIC
X	14246859	X_14246859_SNP [dm3] X_14352826_SNP [dm6]	C	T	1.129e^-8	4.039e^-4	INTRON dpr8
3L	14059741	3L_14059741_SNP [dm3] 3L_14066641_SNP [dm6]	G	A	1.189e^-8	4.175e^-4	SYNONYMOUS_CODING CG32138	TF binding site mE1_TFBS_cad
3R	18954381	3R_18954381_SNP [dm3] 3R_23128659_SNP [dm6]	C	T	1.240e^-8	4.271e^-4	UTR_3_PRIME hh UPSTREAM CG31457	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	2134792	2L_2134792_SNP [dm3] 2L_2134792_SNP [dm6]	G	A	1.288e^-8	4.315e^-4	SYNONYMOUS_CODING GlyP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1580936	2R_1580936_SNP [dm3] 2R_5693431_SNP [dm6]	C	T	1.299e^-8	4.315e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3R	19771255	3R_19771255_SNP [dm3] 3R_23945533_SNP [dm6]	G	T	1.350e^-8	4.406e^-4	INTRON CG12268	TF binding site mE1_TFBS_cad
2L	2334943	2L_2334943_SNP [dm3] 2L_2334943_SNP [dm6]	T	G	1.400e^-8	4.490e^-4	INTRON CG9967 & 1 other
2L	10113873	2L_10113873_SNP [dm3] 2L_10113873_SNP [dm6]	A	G	1.466e^-8	4.578e^-4	INTRON CG44153 & 1 other
3R	18691564	3R_18691564_INS [dm3] 3R_22865842_INS [dm6]	A	AA	1.477e^-8	4.578e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18452935	2R_18452935_SNP [dm3] 2R_22565430_SNP [dm6]	T	C	1.503e^-8	4.585e^-4	INTRON dnr1	TF binding site mE1_TFBS_GATAe
2R	15549858	2R_15549858_SNP [dm3] 2R_19662353_SNP [dm6]	G	A	1.566e^-8	4.625e^-4	UPSTREAM mir-4 & 5 others INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	2126487	2L_2126487_SNP [dm3] 2L_2126487_SNP [dm6]	C	T	1.566e^-8	4.625e^-4	DOWNSTREAM CG4259 INTERGENIC
3L	12682974	3L_12682974_DEL [dm3] 3L_12689874_DEL [dm6]	CCCAC	C	1.736e^-8	4.926e^-4	INTERGENIC
X	19660917	X_19660917_SNP [dm3] X_19766884_SNP [dm6]	G	A	1.746e^-8	4.926e^-4	UTR_3_PRIME vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	10856423	3L_10856423_SNP [dm3] 3L_10863323_SNP [dm6]	G	A	1.747e^-8	4.926e^-4	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens
X	19660724	X_19660724_SNP [dm3] X_19766691_SNP [dm6]	T	C	1.780e^-8	4.944e^-4	UTR_3_PRIME vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13083516	2R_13083516_SNP [dm3] 2R_17196011_SNP [dm6]	T	G	1.942e^-8	5.313e^-4	SYNONYMOUS_CODING CG10950	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	795610	2R_795610_DEL [dm3] 2R_4908105_DEL [dm6]	GCCATAAACCGA...	G	2.004e^-8	5.403e^-4	UPSTREAM CG44102 INTERGENIC	transposable element FlyBase
3R	25394902	3R_25394902_SNP [dm3] 3R_29569180_SNP [dm6]	A	G	2.149e^-8	5.712e^-4	INTERGENIC
X	19629800	X_19629800_SNP [dm3] X_19735767_SNP [dm6]	G	T	2.252e^-8	5.901e^-4	UTR_5_PRIME CG14234	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19946309	2L_19946309_SNP [dm3] 2L_19946309_SNP [dm6]	G	A	2.453e^-8	6.340e^-4	SYNONYMOUS_CODING sick INTRON sick	TF binding site mE1_TFBS_chinmo
2R	18088442	2R_18088442_SNP [dm3] 2R_22200937_SNP [dm6]	A	T	2.498e^-8	6.365e^-4	UPSTREAM CR45376 INTRON Swim
3L	6994718	3L_6994718_SNP [dm3] 3L_7001618_SNP [dm6]	C	T	2.775e^-8	6.976e^-4	INTRON Mp
3R	12006304	3R_12006304_SNP [dm3] 3R_16180582_SNP [dm6]	G	A	2.897e^-8	7.186e^-4	UPSTREAM CG8927 DOWNSTREAM CG8925 INTERGENIC
3R	7340944	3R_7340944_DEL [dm3] 3R_11515222_DEL [dm6]	CTCTTTTTGAAAGTTAGAA...	C	2.983e^-8	7.302e^-4	INTERGENIC
2R	4545145	2R_4545145_SNP [dm3] 2R_8657640_SNP [dm6]	C	T	3.113e^-8	7.523e^-4	INTRON ptc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
X	13599815	X_13599815_SNP [dm3] X_13705782_SNP [dm6]	A	G	3.220e^-8	7.681e^-4	START_GAINED NnaD UTR_5_PRIME NnaD INTRON NnaD & 1 other
X	19660415	X_19660415_SNP [dm3] X_19766382_SNP [dm6]	T	G	3.391e^-8	7.986e^-4	DOWNSTREAM vfl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	4244353	X_4244353_DEL [dm3] X_4350320_DEL [dm6]	TCTCCGCAT	T	3.600e^-8	8.372e^-4	INTRON norpA
2L	3682220	2L_3682220_SNP [dm3] 2L_3682220_SNP [dm6]	A	T	3.736e^-8	8.581e^-4	INTRON CG34340	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5849160	2L_5849160_SNP [dm3] 2L_5849160_SNP [dm6]	T	C	3.998e^-8	8.975e^-4	INTRON TrissinR
3L	15315117	3L_15315117_SNP [dm3] 3L_15322017_SNP [dm6]	A	T	4.011e^-8	8.975e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	4291775	X_4291775_SNP [dm3] X_4397742_SNP [dm6]	C	A	4.052e^-8	8.975e^-4	INTRON CR32773
X	19277918	X_19277918_SNP [dm3] X_19383885_SNP [dm6]	G	A	4.375e^-8	9.194e^-4	INTRON kek5
X	19277935	X_19277935_SNP [dm3] X_19383902_SNP [dm6]	G	A	4.375e^-8	9.194e^-4	INTRON kek5
3L	1137706	3L_1137706_SNP [dm3] 3L_1137706_SNP [dm6]	G	C	4.382e^-8	9.194e^-4	INTERGENIC
3L	15944822	3L_15944822_SNP [dm3] 3L_15951722_SNP [dm6]	G	T	4.491e^-8	9.194e^-4	INTRON Pka-C3
2L	5849168	2L_5849168_SNP [dm3] 2L_5849168_SNP [dm6]	A	G	4.530e^-8	9.194e^-4	INTRON TrissinR
3L	15944859	3L_15944859_DEL [dm3] 3L_15951759_DEL [dm6]	AACATTATGACGAGTTA...	A	4.533e^-8	9.194e^-4	INTRON Pka-C3
3L	8565788	3L_8565788_SNP [dm3] 3L_8572688_SNP [dm6]	T	C	4.540e^-8	9.194e^-4	DOWNSTREAM mir-190 INTRON rhea
X	20362718	X_20362718_SNP [dm3] X_20491691_SNP [dm6]	A	G	4.596e^-8	9.194e^-4	UPSTREAM RhoGAP19D INTRON RhoGAP19D
X	20362749	X_20362749_SNP [dm3] X_20491722_SNP [dm6]	A	G	4.596e^-8	9.194e^-4	UPSTREAM RhoGAP19D INTRON RhoGAP19D
3R	25394896	3R_25394896_SNP [dm3] 3R_29569174_SNP [dm6]	T	G	4.802e^-8	9.503e^-4	INTERGENIC
3R	26160970	3R_26160970_INS [dm3] 3R_30335248_INS [dm6]	T	TGC	5.240e^-8	0.001	INTRON hdc
3L	7337373	3L_7337373_SNP [dm3] 3L_7344273_SNP [dm6]	G	A	5.310e^-8	0.001	START_GAINED CG8596 UTR_5_PRIME CG8596 UPSTREAM CG8596 INTRON CG8596	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	19277916	X_19277916_SNP [dm3] X_19383883_SNP [dm6]	G	T	5.603e^-8	0.001	INTRON kek5
X	4868770	X_4868770_SNP [dm3] X_4974737_SNP [dm6]	G	A	5.690e^-8	0.001	INTRON CR44833
2L	8161966	2L_8161966_SNP [dm3] 2L_8161966_SNP [dm6]	A	T	5.820e^-8	0.001	SYNONYMOUS_CODING CG8498 DOWNSTREAM Rbsn-5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	20362562	X_20362562_SNP [dm3] X_20491535_SNP [dm6]	G	A	6.132e^-8	0.001	UPSTREAM RhoGAP19D INTRON RhoGAP19D

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By genomic position
Variant impact
Gene name

Microbiota_OTU022 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results