DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.398e^-15)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.03175
In_3R_P	2.014e-06

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	14.2415	0.0008

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

9501 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	7524523	3R_7524523_SNP [dm3] 3R_11698801_SNP [dm6]	T	G	1.476e^-22	1.536e^-16	DOWNSTREAM CG14717 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
3R	5058044	3R_5058044_SNP [dm3] 3R_9232322_SNP [dm6]	A	G	3.070e^-22	1.536e^-16	SYNONYMOUS_CODING pum	TF binding site mE1_TFBS_chinmo
3R	7515427	3R_7515427_SNP [dm3] 3R_11689705_SNP [dm6]	T	A	3.302e^-22	1.536e^-16	DOWNSTREAM CG18765 INTRON CG6908
3R	7515611	3R_7515611_SNP [dm3] 3R_11689889_SNP [dm6]	C	T	3.302e^-22	1.536e^-16	SYNONYMOUS_CODING CG6908 DOWNSTREAM CG18765	TF binding site mE1_TFBS_cnc
2R	19402895	2R_19402895_SNP [dm3] 2R_23515372_SNP [dm6]	G	A	2.158e^-21	6.692e^-16	INTERGENIC
2R	19402896	2R_19402896_SNP [dm3] 2R_23515373_SNP [dm6]	G	A	2.158e^-21	6.692e^-16	INTERGENIC
3L	3786620	3L_3786620_SNP [dm3] 3L_3786620_SNP [dm6]	T	A	1.060e^-20	2.817e^-15	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	7520555	3R_7520555_SNP [dm3] 3R_11694833_SNP [dm6]	A	T	1.895e^-17	4.406e^-12	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	5847440	3L_5847440_SNP [dm3] 3L_5854340_SNP [dm6]	C	T	2.815e^-17	5.818e^-12	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3685944	3R_3685944_SNP [dm3] 3R_7860222_SNP [dm6]	A	G	5.056e^-17	9.407e^-12	INTRON CG17816
3R	26070203	3R_26070203_SNP [dm3] 3R_30244481_SNP [dm6]	G	C	5.896e^-17	9.972e^-12	SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18995912	X_18995912_INS [dm3] X_19101879_INS [dm6]	T	TT	6.534e^-16	1.012e^-10	INTERGENIC
2R	8304874	2R_8304874_SNP [dm3] 2R_12417369_SNP [dm6]	C	G	7.069e^-16	1.012e^-10	NON_SYNONYMOUS_CODING CG13157	TF binding site mE1_TFBS_cad
X	18597817	X_18597817_SNP [dm3] X_18703784_SNP [dm6]	A	T	3.131e^-15	3.895e^-10	INTERGENIC
3R	7515446	3R_7515446_SNP [dm3] 3R_11689724_SNP [dm6]	A	C	3.312e^-15	3.895e^-10	SPLICE_SITE_DONOR CG6908 DOWNSTREAM CG18765 INTRON CG6908	TF binding site mE1_TFBS_cnc
X	18996109	X_18996109_INS [dm3] X_19102076_INS [dm6]	C	CTCGAAAAT	3.566e^-15	3.895e^-10	INTERGENIC
2R	17109729	2R_17109729_SNP [dm3] 2R_21222224_SNP [dm6]	A	G	3.768e^-15	3.895e^-10	INTRON ASPP	TF binding site mE1_TFBS_cad
2R	17109742	2R_17109742_SNP [dm3] 2R_21222237_SNP [dm6]	T	G	3.768e^-15	3.895e^-10	INTRON ASPP	TF binding site mE1_TFBS_cad
3L	5847467	3L_5847467_SNP [dm3] 3L_5854367_SNP [dm6]	G	A	5.040e^-15	4.935e^-10	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18597808	X_18597808_SNP [dm3] X_18703775_SNP [dm6]	A	T	5.842e^-15	5.434e^-10	INTERGENIC
2R	12296156	2R_12296156_SNP [dm3] 2R_16408651_SNP [dm6]	C	T	6.660e^-15	5.901e^-10	INTRON Sema-2b
3R	17894258	3R_17894258_SNP [dm3] 3R_22068536_SNP [dm6]	A	T	7.626e^-15	5.912e^-10	INTRON how
3R	17894397	3R_17894397_SNP [dm3] 3R_22068675_SNP [dm6]	C	A	7.626e^-15	5.912e^-10	INTRON how
3R	17896037	3R_17896037_SNP [dm3] 3R_22070315_SNP [dm6]	C	A	7.626e^-15	5.912e^-10	INTRON how	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	20318815	X_20318815_SNP [dm3] X_20447788_SNP [dm6]	G	A	1.035e^-14	7.702e^-10	INTERGENIC
3R	26234558	3R_26234558_SNP [dm3] 3R_30408836_SNP [dm6]	A	G	1.216e^-14	8.141e^-10	INTERGENIC
3R	26237203	3R_26237203_SNP [dm3] 3R_30411481_SNP [dm6]	C	T	1.216e^-14	8.141e^-10	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18597814	X_18597814_SNP [dm3] X_18703781_SNP [dm6]	G	T	1.225e^-14	8.141e^-10	INTERGENIC
3R	17891723	3R_17891723_SNP [dm3] 3R_22066001_SNP [dm6]	T	A	1.356e^-14	8.698e^-10	INTRON how
3R	19530873	3R_19530873_SNP [dm3] 3R_23705151_SNP [dm6]	T	C	1.479e^-14	9.171e^-10	DOWNSTREAM CG31413 INTRON CG31414	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	19646653	2R_19646653_SNP [dm3] 2R_23759130_SNP [dm6]	G	T	2.404e^-14	1.443e^-9	INTRON CG9850	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	7520556	3R_7520556_SNP [dm3] 3R_11694834_SNP [dm6]	G	T	3.108e^-14	1.700e^-9	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	7520558	3R_7520558_SNP [dm3] 3R_11694836_SNP [dm6]	A	G	3.108e^-14	1.700e^-9	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	7520595	3R_7520595_SNP [dm3] 3R_11694873_SNP [dm6]	T	A	3.108e^-14	1.700e^-9	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	26236645	3R_26236645_SNP [dm3] 3R_30410923_SNP [dm6]	C	G	3.369e^-14	1.791e^-9	INTERGENIC
3R	17891188	3R_17891188_SNP [dm3] 3R_22065466_SNP [dm6]	G	A	3.725e^-14	1.925e^-9	INTRON how
3R	7520569	3R_7520569_SNP [dm3] 3R_11694847_SNP [dm6]	C	T	5.374e^-14	2.702e^-9	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	9901037	X_9901037_SNP [dm3] X_10007004_SNP [dm6]	T	C	1.490e^-13	7.293e^-9	DOWNSTREAM CG32694 INTERGENIC
3R	5055986	3R_5055986_SNP [dm3] 3R_9230264_SNP [dm6]	C	A	1.756e^-13	8.378e^-9	INTRON pum EXON CR45196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	9901366	X_9901366_SNP [dm3] X_10007333_SNP [dm6]	C	T	2.400e^-13	1.116e^-8	DOWNSTREAM CG32694 INTERGENIC
X	8803433	X_8803433_SNP [dm3] X_8909400_SNP [dm6]	G	C	2.530e^-13	1.148e^-8	INTRON rdgA
3R	7512657	3R_7512657_SNP [dm3] 3R_11686935_SNP [dm6]	A	G	2.778e^-13	1.202e^-8	SYNONYMOUS_CODING CG6834
3R	7512806	3R_7512806_SNP [dm3] 3R_11687084_SNP [dm6]	A	C	2.778e^-13	1.202e^-8	NON_SYNONYMOUS_CODING CG6834
2R	12805870	2R_12805870_SNP [dm3] 2R_16918365_SNP [dm6]	T	G	2.987e^-13	1.247e^-8	INTERGENIC
3R	23490827	3R_23490827_SNP [dm3] 3R_27665105_SNP [dm6]	C	A	3.015e^-13	1.247e^-8	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad
3R	12047750	3R_12047750_SNP [dm3] 3R_16222028_SNP [dm6]	A	G	6.291e^-13	2.490e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12047765	3R_12047765_SNP [dm3] 3R_16222043_SNP [dm6]	G	A	6.291e^-13	2.490e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17872212	X_17872212_SNP [dm3] X_17978179_SNP [dm6]	A	G	7.472e^-13	2.827e^-8	INTRON Sh
3R	17904057	3R_17904057_SNP [dm3] 3R_22078335_SNP [dm6]	A	G	7.641e^-13	2.827e^-8	UTR_3_PRIME how
X	17870981	X_17870981_SNP [dm3] X_17976948_SNP [dm6]	A	T	7.900e^-13	2.827e^-8	INTRON Sh
X	17871057	X_17871057_SNP [dm3] X_17977024_SNP [dm6]	C	T	7.900e^-13	2.827e^-8	INTRON Sh
X	17871070	X_17871070_SNP [dm3] X_17977037_SNP [dm6]	A	G	7.900e^-13	2.827e^-8	INTRON Sh
3R	22521293	3R_22521293_SNP [dm3] 3R_26695571_SNP [dm6]	G	T	9.327e^-13	3.274e^-8	INTERGENIC
3R	12047739	3R_12047739_SNP [dm3] 3R_16222017_SNP [dm6]	A	T	9.893e^-13	3.408e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26236589	3R_26236589_SNP [dm3] 3R_30410867_SNP [dm6]	A	C	1.788e^-12	5.941e^-8	INTERGENIC
3R	26236749	3R_26236749_SNP [dm3] 3R_30411027_SNP [dm6]	C	A	1.788e^-12	5.941e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	5225260	X_5225260_SNP [dm3] X_5331227_SNP [dm6]	G	A	1.851e^-12	6.041e^-8	SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8368307	2R_8368307_SNP [dm3] 2R_12480802_SNP [dm6]	A	G	2.264e^-12	7.019e^-8	UTR_5_PRIME Dh44-R2
3R	3736357	3R_3736357_SNP [dm3] 3R_7910635_SNP [dm6]	G	A	2.264e^-12	7.019e^-8	SYNONYMOUS_CODING Prat DOWNSTREAM Taf7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6573557	X_6573557_SNP [dm3] X_6679524_SNP [dm6]	T	C	2.264e^-12	7.019e^-8	UPSTREAM l_1_G0255 & 1 other INTRON l_1_G0255
2R	17810265	2R_17810265_INS [dm3] 2R_21922760_INS [dm6]	T	TAAAT	3.244e^-12	9.680e^-8	INTRON Fili
2R	17810301	2R_17810301_SNP [dm3] 2R_21922796_SNP [dm6]	C	T	3.244e^-12	9.680e^-8	INTRON Fili
3R	26496802	3R_26496802_SNP [dm3] 3R_30671080_SNP [dm6]	C	T	3.382e^-12	9.680e^-8	INTERGENIC
3R	26496809	3R_26496809_INS [dm3] 3R_30671087_INS [dm6]	T	TCA	3.382e^-12	9.680e^-8	INTERGENIC
3R	26496811	3R_26496811_INS [dm3] 3R_30671089_INS [dm6]	G	GTATACGAAT	3.382e^-12	9.680e^-8	INTERGENIC
X	9901008	X_9901008_SNP [dm3] X_10006975_SNP [dm6]	G	A	6.791e^-12	1.914e^-7	DOWNSTREAM CG32694 INTERGENIC
2L	6811469	2L_6811469_SNP [dm3] 2L_6811469_SNP [dm6]	C	T	7.990e^-12	2.219e^-7	INTERGENIC
X	18597730	X_18597730_SNP [dm3] X_18703697_SNP [dm6]	A	T	9.142e^-12	2.465e^-7	INTERGENIC
X	18597731	X_18597731_SNP [dm3] X_18703698_SNP [dm6]	T	A	9.142e^-12	2.465e^-7	INTERGENIC
3R	5056680	3R_5056680_SNP [dm3] 3R_9230958_SNP [dm6]	G	A	9.772e^-12	2.525e^-7	DOWNSTREAM CR45196 INTRON pum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_Trl
3R	5057505	3R_5057505_SNP [dm3] 3R_9231783_SNP [dm6]	G	A	9.772e^-12	2.525e^-7	INTRON pum	TF binding site mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3R	5059052	3R_5059052_SNP [dm3] 3R_9233330_SNP [dm6]	A	C	9.772e^-12	2.525e^-7	INTRON pum	TF binding site BDTNP1_TFBS_dl
3L	12860995	3L_12860995_SNP [dm3] 3L_12867895_SNP [dm6]	A	G	1.213e^-11	3.093e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12550816	3R_12550816_SNP [dm3] 3R_16725094_SNP [dm6]	A	T	1.371e^-11	3.415e^-7	INTRON Ubx
3R	6056230	3R_6056230_SNP [dm3] 3R_10230508_SNP [dm6]	T	A	1.377e^-11	3.415e^-7	INTRON CG42795
3L	2062396	3L_2062396_SNP [dm3] 3L_2062396_SNP [dm6]	T	G	1.718e^-11	4.204e^-7	INTRON sls
3L	12860978	3L_12860978_INS [dm3] 3L_12867878_INS [dm6]	T	TC	1.814e^-11	4.384e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11976568	3L_11976568_SNP [dm3] 3L_11983468_SNP [dm6]	T	A	1.982e^-11	4.659e^-7	NON_SYNONYMOUS_CODING CG43896	TF binding site mE1_TFBS_chinmo
2R	9192574	2R_9192574_SNP [dm3] 2R_13305069_SNP [dm6]	A	G	1.991e^-11	4.659e^-7	INTERGENIC
3L	6101965	3L_6101965_SNP [dm3] 3L_6108865_SNP [dm6]	G	T	2.003e^-11	4.659e^-7	INTRON Ets65A
2R	10007376	2R_10007376_SNP [dm3] 2R_14119871_SNP [dm6]	T	C	2.056e^-11	4.664e^-7	INTRON Prosap	TF binding site mE1_TFBS_HSA
2R	10007386	2R_10007386_SNP [dm3] 2R_14119881_SNP [dm6]	T	C	2.056e^-11	4.664e^-7	INTRON Prosap	TF binding site mE1_TFBS_HSA
3L	10530386	3L_10530386_SNP [dm3] 3L_10537286_SNP [dm6]	T	A	2.167e^-11	4.858e^-7	INTRON A2bp1
3R	12550953	3R_12550953_SNP [dm3] 3R_16725231_SNP [dm6]	G	A	2.299e^-11	5.032e^-7	INTRON Ubx
3R	6818774	3R_6818774_SNP [dm3] 3R_10993052_SNP [dm6]	C	A	2.299e^-11	5.032e^-7	UTR_5_PRIME CG34114
X	18597721	X_18597721_SNP [dm3] X_18703688_SNP [dm6]	T	A	2.411e^-11	5.130e^-7	INTERGENIC
3L	5846589	3L_5846589_SNP [dm3] 3L_5853489_SNP [dm6]	T	A	2.482e^-11	5.130e^-7	INTERGENIC
3L	5846745	3L_5846745_SNP [dm3] 3L_5853645_SNP [dm6]	G	T	2.482e^-11	5.130e^-7	INTERGENIC
3L	5847291	3L_5847291_SNP [dm3] 3L_5854191_SNP [dm6]	G	T	2.482e^-11	5.130e^-7	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17874126	X_17874126_SNP [dm3] X_17980093_SNP [dm6]	T	C	2.482e^-11	5.130e^-7	INTRON Sh
2R	10537633	2R_10537633_SNP [dm3] 2R_14650128_SNP [dm6]	T	A	2.851e^-11	5.829e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9819355	X_9819355_SNP [dm3] X_9925322_SNP [dm6]	C	A	3.452e^-11	6.966e^-7	INTERGENIC
3R	14223496	3R_14223496_SNP [dm3] 3R_18397774_SNP [dm6]	A	G	3.514e^-11	6.966e^-7	UPSTREAM Vha100-2 INTRON Vha100-2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	26071981	3R_26071981_SNP [dm3] 3R_30246259_SNP [dm6]	A	C	3.520e^-11	6.966e^-7	INTRON CG9733
2R	9658051	2R_9658051_DEL [dm3] 2R_13770546_DEL [dm6]	TTC	T	4.558e^-11	8.927e^-7	INTRON Cpr50Ca	TF binding site mE1_TFBS_HSA
3R	26070190	3R_26070190_SNP [dm3] 3R_30244468_SNP [dm6]	G	A	4.733e^-11	9.172e^-7	SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12047735	3R_12047735_SNP [dm3] 3R_16222013_SNP [dm6]	A	T	4.829e^-11	9.261e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8804240	X_8804240_SNP [dm3] X_8910207_SNP [dm6]	T	A	5.196e^-11	9.864e^-7	INTRON rdgA
2R	9107654	2R_9107654_SNP [dm3] 2R_13220149_SNP [dm6]	G	C	5.383e^-11	1.012e^-6	NON_SYNONYMOUS_CODING CG4646 UPSTREAM CG4630 & 1 other DOWNSTREAM Fsn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	5225293	X_5225293_SNP [dm3] X_5331260_SNP [dm6]	G	A	6.452e^-11	1.200e^-6	SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_sens
X	8802853	X_8802853_SNP [dm3] X_8908820_SNP [dm6]	G	T	9.077e^-11	1.672e^-6	INTRON rdgA	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	20647120	3L_20647120_INS [dm3] 3L_20654020_INS [dm6]	A	AA	1.145e^-10	2.089e^-6	EXON CR44685
2L	10117839	2L_10117839_SNP [dm3] 2L_10117839_SNP [dm6]	C	A	1.248e^-10	2.213e^-6	INTRON CG44153 & 1 other
2R	12296183	2R_12296183_SNP [dm3] 2R_16408678_SNP [dm6]	C	T	1.281e^-10	2.213e^-6	INTRON Sema-2b
2R	12806467	2R_12806467_SNP [dm3] 2R_16918962_SNP [dm6]	T	A	1.281e^-10	2.213e^-6	INTERGENIC
3R	15881808	3R_15881808_SNP [dm3] 3R_20056086_SNP [dm6]	T	G	1.281e^-10	2.213e^-6	UTR_5_PRIME CG17193 DOWNSTREAM CG4390
X	9459640	X_9459640_SNP [dm3] X_9565607_SNP [dm6]	C	T	1.281e^-10	2.213e^-6	SYNONYMOUS_CODING Cubn
3R	25966218	3R_25966218_SNP [dm3] 3R_30140496_SNP [dm6]	T	C	1.296e^-10	2.213e^-6	INTRON AdoR	TF binding site mE1_TFBS_chinmo
3R	27082931	3R_27082931_SNP [dm3] 3R_31257209_SNP [dm6]	G	A	1.296e^-10	2.213e^-6	UPSTREAM CG3669 DOWNSTREAM spn-F INTERGENIC
3L	1800694	3L_1800694_SNP [dm3] 3L_1800694_SNP [dm6]	A	T	1.511e^-10	2.555e^-6	NON_SYNONYMOUS_CODING Patj	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13882437	3L_13882437_SNP [dm3] 3L_13889337_SNP [dm6]	T	C	1.541e^-10	2.584e^-6	INTRON dysc
2R	8414963	2R_8414963_SNP [dm3] 2R_12527458_SNP [dm6]	T	C	1.558e^-10	2.589e^-6	INTERGENIC
3R	6047398	3R_6047398_SNP [dm3] 3R_10221676_SNP [dm6]	A	G	1.594e^-10	2.625e^-6	UTR_3_PRIME Syn	TF binding site BDTNP1_TFBS_dl
3L	9283075	3L_9283075_SNP [dm3] 3L_9289975_SNP [dm6]	A	G	1.649e^-10	2.691e^-6	INTERGENIC
2R	20580301	2R_20580301_SNP [dm3] 2R_24692778_SNP [dm6]	G	A	1.762e^-10	2.807e^-6	SYNONYMOUS_CODING ST6Gal	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5846122	3L_5846122_SNP [dm3] 3L_5853022_SNP [dm6]	C	T	1.762e^-10	2.807e^-6	INTERGENIC
3L	5011150	3L_5011150_SNP [dm3] 3L_5011150_SNP [dm6]	C	T	1.773e^-10	2.807e^-6	DOWNSTREAM CG12027 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8832702	2R_8832702_SNP [dm3] 2R_12945197_SNP [dm6]	G	A	1.780e^-10	2.807e^-6	UTR_5_PRIME Mdr49 UPSTREAM Mdr49
2R	16289285	2R_16289285_SNP [dm3] 2R_20401780_SNP [dm6]	G	C	1.858e^-10	2.857e^-6	INTERGENIC
2R	8135377	2R_8135377_SNP [dm3] 2R_12247872_SNP [dm6]	G	A	1.858e^-10	2.857e^-6	UPSTREAM CR44315 INTERGENIC	transposable element FlyBase
2R	8351745	2R_8351745_SNP [dm3] 2R_12464240_SNP [dm6]	A	G	1.858e^-10	2.857e^-6	INTRON Lac
3R	15881772	3R_15881772_SNP [dm3] 3R_20056050_SNP [dm6]	C	G	2.469e^-10	3.621e^-6	UTR_5_PRIME CG17193 DOWNSTREAM CG4390
3R	12047706	3R_12047706_SNP [dm3] 3R_16221984_SNP [dm6]	T	C	2.479e^-10	3.621e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12047720	3R_12047720_SNP [dm3] 3R_16221998_SNP [dm6]	T	A	2.479e^-10	3.621e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26192824	3R_26192824_SNP [dm3] 3R_30367102_SNP [dm6]	A	G	2.505e^-10	3.621e^-6	UTR_3_PRIME hdc
3R	14270293	3R_14270293_SNP [dm3] 3R_18444571_SNP [dm6]	T	G	2.511e^-10	3.621e^-6	INTRON fru
3R	22412788	3R_22412788_SNP [dm3] 3R_26587066_SNP [dm6]	A	T	2.511e^-10	3.621e^-6	UTR_3_PRIME scrib INTRON scrib
3R	22412874	3R_22412874_SNP [dm3] 3R_26587152_SNP [dm6]	A	T	2.511e^-10	3.621e^-6	UTR_3_PRIME scrib INTRON scrib
3R	23315696	3R_23315696_DEL [dm3] 3R_27489974_DEL [dm6]	GCA	T	2.511e^-10	3.621e^-6	DOWNSTREAM Gr98a INTERGENIC
3R	26878460	3R_26878460_SNP [dm3] 3R_31052738_SNP [dm6]	T	C	2.810e^-10	4.022e^-6	UTR_3_PRIME l_3_03670 DOWNSTREAM Aph-4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17351432	3L_17351432_SNP [dm3] 3L_17358332_SNP [dm6]	G	C	3.120e^-10	4.432e^-6	DOWNSTREAM CG7692 INTERGENIC
2R	10831136	2R_10831136_DEL [dm3] 2R_14943631_DEL [dm6]	AAACA	A	3.179e^-10	4.481e^-6	DOWNSTREAM aPKC INTRON CG10257
X	9900980	X_9900980_SNP [dm3] X_10006947_SNP [dm6]	G	C	3.420e^-10	4.736e^-6	DOWNSTREAM CG32694 INTERGENIC
3R	12715095	3R_12715095_SNP [dm3] 3R_16889373_SNP [dm6]	A	G	3.444e^-10	4.736e^-6	INTRON iab-8
3R	24909768	3R_24909768_SNP [dm3] 3R_29084046_SNP [dm6]	T	A	3.453e^-10	4.736e^-6	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	4120927	2R_4120927_SNP [dm3] 2R_8233422_SNP [dm6]	T	A	3.462e^-10	4.736e^-6	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2R	10507503	2R_10507503_SNP [dm3] 2R_14619998_SNP [dm6]	G	A	3.555e^-10	4.793e^-6	SYNONYMOUS_CODING CG12863 DOWNSTREAM Sec61beta	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8135410	2R_8135410_SNP [dm3] 2R_12247905_SNP [dm6]	G	A	3.555e^-10	4.793e^-6	UPSTREAM CR44315 INTERGENIC	transposable element FlyBase
3L	12569540	3L_12569540_SNP [dm3] 3L_12576440_SNP [dm6]	T	A	3.626e^-10	4.854e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
3L	16015769	3L_16015769_SNP [dm3] 3L_16022669_SNP [dm6]	A	G	3.665e^-10	4.871e^-6	UPSTREAM Notum INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	14769918	X_14769918_SNP [dm3] X_14875885_SNP [dm6]	A	G	3.841e^-10	5.068e^-6	SYNONYMOUS_CODING CG45065 UTR_3_PRIME CG45064 INTRON Flo2
2R	4120855	2R_4120855_SNP [dm3] 2R_8233350_SNP [dm6]	C	T	4.794e^-10	6.281e^-6	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3R	6919043	3R_6919043_SNP [dm3] 3R_11093321_SNP [dm6]	A	T	4.843e^-10	6.301e^-6	INTERGENIC
3R	22590049	3R_22590049_SNP [dm3] 3R_26764327_SNP [dm6]	C	T	4.895e^-10	6.324e^-6	INTERGENIC
2R	15408690	2R_15408690_SNP [dm3] 2R_19521185_SNP [dm6]	A	T	5.234e^-10	6.716e^-6	UTR_3_PRIME sm
3R	26233621	3R_26233621_SNP [dm3] 3R_30407899_SNP [dm6]	C	T	5.321e^-10	6.736e^-6	INTERGENIC
3L	12569545	3L_12569545_SNP [dm3] 3L_12576445_SNP [dm6]	T	A	5.322e^-10	6.736e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
3L	12584264	3L_12584264_SNP [dm3] 3L_12591164_SNP [dm6]	G	A	5.604e^-10	7.044e^-6	INTRON ara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19025316	3L_19025316_SNP [dm3] 3L_19032216_SNP [dm6]	A	T	6.003e^-10	7.495e^-6	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	9176923	2R_9176923_SNP [dm3] 2R_13289418_SNP [dm6]	A	T	6.497e^-10	8.058e^-6	INTRON Dh31-R
X	18597653	X_18597653_SNP [dm3] X_18703620_SNP [dm6]	T	A	6.591e^-10	8.121e^-6	INTERGENIC
3R	24756165	3R_24756165_SNP [dm3] 3R_28930443_SNP [dm6]	C	G	6.704e^-10	8.205e^-6	INTRON CG14521
X	18587597	X_18587597_SNP [dm3] X_18693564_SNP [dm6]	A	G	7.719e^-10	9.311e^-6	UPSTREAM Cyp18a1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	6069500	3R_6069500_SNP [dm3] 3R_10243778_SNP [dm6]	A	G	7.757e^-10	9.311e^-6	NON_SYNONYMOUS_CODING CG42795
3R	6069515	3R_6069515_SNP [dm3] 3R_10243793_SNP [dm6]	A	C	7.757e^-10	9.311e^-6	NON_SYNONYMOUS_CODING CG42795
X	21337658	X_21337658_SNP [dm3] X_21466631_SNP [dm6]	T	A	9.049e^-10	1.079e^-5	DOWNSTREAM CR45507 INTERGENIC
3R	14134901	3R_14134901_SNP [dm3] 3R_18309179_SNP [dm6]	G	C	9.163e^-10	1.080e^-5	UTR_5_PRIME PKD
3R	11131231	3R_11131231_SNP [dm3] 3R_15305509_SNP [dm6]	G	A	9.169e^-10	1.080e^-5	SYNONYMOUS_CODING Tm1 DOWNSTREAM Tm1 INTRON Tm1	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5050730	3R_5050730_SNP [dm3] 3R_9225008_SNP [dm6]	C	A	1.004e^-9	1.175e^-5	INTRON pum
2R	4181210	2R_4181210_SNP [dm3] 2R_8293705_SNP [dm6]	A	C	1.028e^-9	1.196e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	10890705	3R_10890705_SNP [dm3] 3R_15064983_SNP [dm6]	C	T	1.047e^-9	1.206e^-5	INTRON dpr9
X	18596091	X_18596091_SNP [dm3] X_18702058_SNP [dm6]	A	G	1.050e^-9	1.206e^-5	INTERGENIC
3R	26943207	3R_26943207_SNP [dm3] 3R_31117485_SNP [dm6]	A	C	1.358e^-9	1.545e^-5	INTERGENIC
3L	1152545	3L_1152545_DEL [dm3] 3L_1152545_DEL [dm6]	GG	G	1.362e^-9	1.545e^-5	INTRON bab2
2R	8304632	2R_8304632_SNP [dm3] 2R_12417127_SNP [dm6]	G	T	1.549e^-9	1.718e^-5	INTRON CG13157	TF binding site mE1_TFBS_cad
X	18597424	X_18597424_SNP [dm3] X_18703391_SNP [dm6]	T	A	1.552e^-9	1.718e^-5	INTERGENIC
X	18597946	X_18597946_SNP [dm3] X_18703913_SNP [dm6]	A	T	1.552e^-9	1.718e^-5	INTERGENIC
X	5224774	X_5224774_SNP [dm3] X_5330741_SNP [dm6]	G	A	1.561e^-9	1.718e^-5	SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5224782	X_5224782_SNP [dm3] X_5330749_SNP [dm6]	C	T	1.561e^-9	1.718e^-5	NON_SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9337475	2R_9337475_SNP [dm3] 2R_13449970_SNP [dm6]	T	A	1.581e^-9	1.730e^-5	UPSTREAM cnn & 1 other INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
3R	12033575	3R_12033575_SNP [dm3] 3R_16207853_SNP [dm6]	A	G	1.858e^-9	2.014e^-5	UPSTREAM CR45640 DOWNSTREAM CR45639 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	3751465	3R_3751465_DEL [dm3] 3R_7925743_DEL [dm6]	GAGGT	G	1.862e^-9	2.014e^-5	INTRON dsx
3L	22820713	3L_22820713_SNP [dm3] 3L_22827613_SNP [dm6]	T	C	1.957e^-9	2.105e^-5	INTRON jim
3L	22751686	3L_22751686_SNP [dm3] 3L_22758586_SNP [dm6]	A	G	1.988e^-9	2.125e^-5	INTRON SPoCk
3R	26335494	3R_26335494_SNP [dm3] 3R_30509772_SNP [dm6]	T	C	2.432e^-9	2.585e^-5	SYNONYMOUS_CODING CG34041 DOWNSTREAM CG34041 & 1 other
X	6367406	X_6367406_SNP [dm3] X_6473373_SNP [dm6]	G	C	2.565e^-9	2.712e^-5	UPSTREAM CG33667 INTRON CG42340
3L	10852964	3L_10852964_DEL [dm3] 3L_10859864_DEL [dm6]	GATACTG	G	2.740e^-9	2.880e^-5	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	27350295	3R_27350295_SNP [dm3] 3R_31524573_SNP [dm6]	G	A	2.843e^-9	2.972e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22239849	3R_22239849_SNP [dm3] 3R_26414127_SNP [dm6]	C	G	3.073e^-9	3.194e^-5	UTR_5_PRIME CG5432
3R	20791067	3R_20791067_SNP [dm3] 3R_24965345_SNP [dm6]	G	T	3.143e^-9	3.233e^-5	INTERGENIC
X	18597897	X_18597897_SNP [dm3] X_18703864_SNP [dm6]	A	T	3.145e^-9	3.233e^-5	INTERGENIC
3L	14614795	3L_14614795_SNP [dm3] 3L_14621695_SNP [dm6]	A	G	3.216e^-9	3.283e^-5	UTR_3_PRIME shd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk
3R	26848424	3R_26848424_SNP [dm3] 3R_31022702_SNP [dm6]	A	T	3.235e^-9	3.283e^-5	INTERGENIC
3R	26335509	3R_26335509_SNP [dm3] 3R_30509787_SNP [dm6]	G	A	3.265e^-9	3.283e^-5	SYNONYMOUS_CODING CG34041 DOWNSTREAM CG34041 & 1 other
3R	26335517	3R_26335517_SNP [dm3] 3R_30509795_SNP [dm6]	C	T	3.265e^-9	3.283e^-5	NON_SYNONYMOUS_CODING CG34041 DOWNSTREAM CG34041 & 1 other
3R	26336915	3R_26336915_SNP [dm3] 3R_30511193_SNP [dm6]	C	T	3.301e^-9	3.292e^-5	SYNONYMOUS_CODING PH4alphaNE2
3R	26336038	3R_26336038_SNP [dm3] 3R_30510316_SNP [dm6]	A	G	3.309e^-9	3.292e^-5	SYNONYMOUS_CODING PH4alphaNE2 DOWNSTREAM CG34041
3L	18181777	3L_18181777_SNP [dm3] 3L_18188677_SNP [dm6]	A	G	3.387e^-9	3.352e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	4932262	3R_4932262_SNP [dm3] 3R_9106540_SNP [dm6]	G	C	3.494e^-9	3.439e^-5	INTRON pum
2R	19509626	2R_19509626_SNP [dm3] 2R_23622103_SNP [dm6]	A	G	3.616e^-9	3.541e^-5	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26335981	3R_26335981_SNP [dm3] 3R_30510259_SNP [dm6]	C	A	3.961e^-9	3.817e^-5	SYNONYMOUS_CODING PH4alphaNE2 DOWNSTREAM CG34041
3R	22239720	3R_22239720_SNP [dm3] 3R_26413998_SNP [dm6]	G	C	3.974e^-9	3.817e^-5	UPSTREAM CG5432 INTERGENIC
3R	22239806	3R_22239806_SNP [dm3] 3R_26414084_SNP [dm6]	C	T	3.974e^-9	3.817e^-5	UPSTREAM CG5432 INTERGENIC
3R	18733975	3R_18733975_SNP [dm3] 3R_22908253_SNP [dm6]	C	A	4.001e^-9	3.817e^-5	INTRON klg
X	20324811	X_20324811_SNP [dm3] X_20453784_SNP [dm6]	G	T	4.001e^-9	3.817e^-5	INTRON CG32506
2L	830762	2L_830762_SNP [dm3] 2L_830762_SNP [dm6]	C	G	4.167e^-9	3.955e^-5	SYNONYMOUS_CODING dock	TF binding site mE1_TFBS_cad
3R	22475779	3R_22475779_SNP [dm3] 3R_26650057_SNP [dm6]	C	T	4.306e^-9	4.066e^-5	INTRON beat-VII
3L	12964901	3L_12964901_SNP [dm3] 3L_12971801_SNP [dm6]	C	T	4.562e^-9	4.265e^-5	SYNONYMOUS_CODING CG10748 UPSTREAM CG10749	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26848457	3R_26848457_SNP [dm3] 3R_31022735_SNP [dm6]	G	T	4.562e^-9	4.265e^-5	INTERGENIC
3R	20791086	3R_20791086_SNP [dm3] 3R_24965364_SNP [dm6]	A	G	4.866e^-9	4.482e^-5	INTERGENIC
3R	20791089	3R_20791089_SNP [dm3] 3R_24965367_SNP [dm6]	A	G	4.866e^-9	4.482e^-5	INTERGENIC
3R	20791095	3R_20791095_SNP [dm3] 3R_24965373_SNP [dm6]	G	A	4.866e^-9	4.482e^-5	INTERGENIC
X	8803658	X_8803658_SNP [dm3] X_8909625_SNP [dm6]	T	A	4.905e^-9	4.495e^-5	INTRON rdgA
3L	17374233	3L_17374233_SNP [dm3] 3L_17381133_SNP [dm6]	C	T	5.127e^-9	4.676e^-5	SYNONYMOUS_CODING CG13728	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3L	7385083	3L_7385083_INS [dm3] 3L_7391983_INS [dm6]	A	TTAT	5.226e^-9	4.743e^-5	INTRON CG8563
2R	19546473	2R_19546473_SNP [dm3] 2R_23658950_SNP [dm6]	G	C	5.362e^-9	4.796e^-5	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19546477	2R_19546477_SNP [dm3] 2R_23658954_SNP [dm6]	T	A	5.362e^-9	4.796e^-5	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19546481	2R_19546481_SNP [dm3] 2R_23658958_SNP [dm6]	C	T	5.362e^-9	4.796e^-5	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	12668615	2R_12668615_SNP [dm3] 2R_16781110_SNP [dm6]	G	C	5.409e^-9	4.815e^-5	NON_SYNONYMOUS_CODING resilin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	17112070	3L_17112070_INS [dm3] 3L_17118970_INS [dm6]	A	ATGCAGGA	5.471e^-9	4.847e^-5	INTRON Rbp6
3R	17891230	3R_17891230_SNP [dm3] 3R_22065508_SNP [dm6]	A	T	5.588e^-9	4.927e^-5	INTRON how
3R	22239711	3R_22239711_SNP [dm3] 3R_26413989_SNP [dm6]	A	G	5.765e^-9	5.060e^-5	UPSTREAM CG5432 INTERGENIC
X	18187319	X_18187319_SNP [dm3] X_18293286_SNP [dm6]	T	A	5.872e^-9	5.129e^-5	DOWNSTREAM CR15061 INTERGENIC
2R	8510006	2R_8510006_SNP [dm3] 2R_12622501_SNP [dm6]	A	G	6.280e^-9	5.460e^-5	UTR_3_PRIME Galphaq
3R	23723542	3R_23723542_SNP [dm3] 3R_27897820_SNP [dm6]	A	G	6.397e^-9	5.497e^-5	INTRON CG34353
3R	20791076	3R_20791076_SNP [dm3] 3R_24965354_SNP [dm6]	A	C	6.454e^-9	5.497e^-5	INTERGENIC
2R	17724005	2R_17724005_SNP [dm3] 2R_21836500_SNP [dm6]	T	C	6.500e^-9	5.497e^-5	UPSTREAM CG4377 INTERGENIC
3R	15873261	3R_15873261_SNP [dm3] 3R_20047539_SNP [dm6]	C	G	6.500e^-9	5.497e^-5	SPLICE_SITE_REGION Indy-2 & 1 other INTRON CG17193 & 2 others
3R	22770623	3R_22770623_SNP [dm3] 3R_26944901_SNP [dm6]	T	G	6.500e^-9	5.497e^-5	UTR_3_PRIME sda UPSTREAM CG14252	TF binding site mE1_TFBS_sbb
3R	23244259	3R_23244259_SNP [dm3] 3R_27418537_SNP [dm6]	T	C	6.500e^-9	5.497e^-5	UTR_5_PRIME side	TF binding site mE1_TFBS_HSA
3L	9398761	3L_9398761_SNP [dm3] 3L_9405661_SNP [dm6]	C	A	6.616e^-9	5.570e^-5	SYNONYMOUS_CODING Cpr67B DOWNSTREAM CG4022	TF binding site mE1_TFBS_sens
3R	2159046	3R_2159046_SNP [dm3] 3R_6333324_SNP [dm6]	A	C	7.091e^-9	5.942e^-5	INTERGENIC
3R	5056940	3R_5056940_SNP [dm3] 3R_9231218_SNP [dm6]	A	T	7.234e^-9	6.035e^-5	DOWNSTREAM CR45196 INTRON pum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_Trl
3R	17891231	3R_17891231_SNP [dm3] 3R_22065509_SNP [dm6]	C	T	7.281e^-9	6.047e^-5	INTRON how
3L	9248319	3L_9248319_SNP [dm3] 3L_9255219_SNP [dm6]	A	C	7.733e^-9	6.394e^-5	INTRON GluRIB
2R	19643309	2R_19643309_SNP [dm3] 2R_23755786_SNP [dm6]	T	G	8.146e^-9	6.676e^-5	NON_SYNONYMOUS_CODING CG9850 INTRON CG9850
2R	8350945	2R_8350945_SNP [dm3] 2R_12463440_SNP [dm6]	C	A	8.146e^-9	6.676e^-5	INTRON Lac	TF binding site BDTNP1_TFBS_dl
3R	15718635	3R_15718635_SNP [dm3] 3R_19892913_SNP [dm6]	G	A	8.590e^-9	6.980e^-5	SYNONYMOUS_CODING CG4733	TF binding site mE1_TFBS_cad
3R	17741951	3R_17741951_SNP [dm3] 3R_21916229_SNP [dm6]	T	C	8.592e^-9	6.980e^-5	DOWNSTREAM CG17843 INTERGENIC
X	18724627	X_18724627_SNP [dm3] X_18830594_SNP [dm6]	C	T	8.663e^-9	6.993e^-5	UTR_5_PRIME CG7101 DOWNSTREAM CG42450	TF binding site mE1_TFBS_cad
3R	21110752	3R_21110752_SNP [dm3] 3R_25285030_SNP [dm6]	T	A	8.682e^-9	6.993e^-5	SYNONYMOUS_CODING CG31300 UPSTREAM CG31104
3R	14027170	3R_14027170_SNP [dm3] 3R_18201448_SNP [dm6]	T	A	8.916e^-9	7.126e^-5	INTRON CG7985
3R	26236154	3R_26236154_SNP [dm3] 3R_30410432_SNP [dm6]	T	G	8.924e^-9	7.126e^-5	INTERGENIC
2R	6305436	2R_6305436_INS [dm3] 2R_10417931_INS [dm6]	C	CCCATTTGGGTAC...	9.019e^-9	7.170e^-5	UPSTREAM CG42732 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	16899785	3R_16899785_SNP [dm3] 3R_21074063_SNP [dm6]	T	A	9.085e^-9	7.193e^-5	SYNONYMOUS_CODING dmrt93B UPSTREAM r-l
3L	17356380	3L_17356380_SNP [dm3] 3L_17363280_SNP [dm6]	G	A	9.196e^-9	7.250e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
3R	2159047	3R_2159047_SNP [dm3] 3R_6333325_SNP [dm6]	C	A	9.383e^-9	7.366e^-5	INTERGENIC
X	18213998	X_18213998_SNP [dm3] X_18319965_SNP [dm6]	A	T	9.967e^-9	7.791e^-5	INTRON CG6023
X	6779358	X_6779358_SNP [dm3] X_6885325_SNP [dm6]	C	A	1.076e^-8	8.374e^-5	INTERGENIC
3R	7514847	3R_7514847_SNP [dm3] 3R_11689125_SNP [dm6]	T	C	1.089e^-8	8.398e^-5	UPSTREAM CG6834 INTRON CG6908	TF binding site BDTNP1_TFBS_z
3R	17896263	3R_17896263_SNP [dm3] 3R_22070541_SNP [dm6]	T	C	1.092e^-8	8.398e^-5	INTRON how	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	17896302	3R_17896302_SNP [dm3] 3R_22070580_SNP [dm6]	T	C	1.092e^-8	8.398e^-5	INTRON how	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	12848157	2R_12848157_SNP [dm3] 2R_16960652_SNP [dm6]	T	C	1.121e^-8	8.486e^-5	UPSTREAM CG9010 INTERGENIC
3R	25307798	3R_25307798_SNP [dm3] 3R_29482076_SNP [dm6]	C	G	1.128e^-8	8.486e^-5	SYNONYMOUS_CODING Ptp99A
3R	12715000	3R_12715000_SNP [dm3] 3R_16889278_SNP [dm6]	G	A	1.138e^-8	8.486e^-5	INTRON iab-8
3R	17810430	3R_17810430_SNP [dm3] 3R_21984708_SNP [dm6]	G	A	1.138e^-8	8.486e^-5	INTRON Eip93F
3R	19997107	3R_19997107_SNP [dm3] 3R_24171385_SNP [dm6]	A	G	1.138e^-8	8.486e^-5	INTERGENIC
3R	19997245	3R_19997245_SNP [dm3] 3R_24171523_SNP [dm6]	G	A	1.138e^-8	8.486e^-5	INTERGENIC
3R	19997253	3R_19997253_SNP [dm3] 3R_24171531_SNP [dm6]	T	C	1.138e^-8	8.486e^-5	INTERGENIC
3R	23887295	3R_23887295_SNP [dm3] 3R_28061573_SNP [dm6]	T	A	1.140e^-8	8.486e^-5	INTRON CG34362
2R	8928961	2R_8928961_SNP [dm3] 2R_13041456_SNP [dm6]	T	A	1.160e^-8	8.600e^-5	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	19645045	2R_19645045_SNP [dm3] 2R_23757522_SNP [dm6]	G	A	1.221e^-8	9.017e^-5	INTRON CG9850
3R	25030053	3R_25030053_SNP [dm3] 3R_29204331_SNP [dm6]	T	A	1.343e^-8	9.872e^-5	UPSTREAM CG14508 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	5057354	3R_5057354_SNP [dm3] 3R_9231632_SNP [dm6]	G	A	1.365e^-8	9.897e^-5	INTRON pum	TF binding site mE1_TFBS_D mE1_TFBS_Trl
2R	16730313	2R_16730313_SNP [dm3] 2R_20842808_SNP [dm6]	A	T	1.365e^-8	9.897e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8803644	X_8803644_SNP [dm3] X_8909611_SNP [dm6]	G	A	1.366e^-8	9.897e^-5	INTRON rdgA
2R	19509507	2R_19509507_DEL [dm3] 2R_23621984_DEL [dm6]	GG	G	1.367e^-8	9.897e^-5	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	17719111	3R_17719111_SNP [dm3] 3R_21893389_SNP [dm6]	A	G	1.402e^-8	1.011e^-4	INTRON CG6678	TF binding site mE1_TFBS_cad
3L	16287616	3L_16287616_SNP [dm3] 3L_16294516_SNP [dm6]	A	G	1.419e^-8	1.012e^-4	DOWNSTREAM CG4962 INTERGENIC	TF binding site mE1_TFBS_sbb
3L	16287768	3L_16287768_SNP [dm3] 3L_16294668_SNP [dm6]	T	A	1.419e^-8	1.012e^-4	DOWNSTREAM CG4962 INTERGENIC
3L	16287801	3L_16287801_INS [dm3] 3L_16294701_INS [dm6]	C	CAACACTGC	1.419e^-8	1.012e^-4	DOWNSTREAM CG4962 INTERGENIC
3R	19997251	3R_19997251_SNP [dm3] 3R_24171529_SNP [dm6]	T	C	1.449e^-8	1.029e^-4	INTERGENIC
3R	22898178	3R_22898178_SNP [dm3] 3R_27072456_SNP [dm6]	C	G	1.496e^-8	1.056e^-4	INTERGENIC	TF binding site mE1_TFBS_cad
3L	4735440	3L_4735440_SNP [dm3] 3L_4735440_SNP [dm6]	C	A	1.510e^-8	1.056e^-4	INTRON RhoGEF64C
3R	17896149	3R_17896149_SNP [dm3] 3R_22070427_SNP [dm6]	G	T	1.513e^-8	1.056e^-4	INTRON how	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	19997176	3R_19997176_SNP [dm3] 3R_24171454_SNP [dm6]	G	A	1.518e^-8	1.056e^-4	INTERGENIC
3R	11324236	3R_11324236_INS [dm3] 3R_15498514_INS [dm6]	T	TT	1.521e^-8	1.056e^-4	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	12563167	3R_12563167_SNP [dm3] 3R_16737445_SNP [dm6]	G	T	1.521e^-8	1.056e^-4	INTERGENIC	regulatory region REDfly_CRMs
3R	19997391	3R_19997391_SNP [dm3] 3R_24171669_SNP [dm6]	A	C	1.531e^-8	1.059e^-4	UPSTREAM CG13606 INTERGENIC
X	18996659	X_18996659_SNP [dm3] X_19102626_SNP [dm6]	A	G	1.755e^-8	1.210e^-4	INTERGENIC
X	9738470	X_9738470_SNP [dm3] X_9844437_SNP [dm6]	C	G	1.765e^-8	1.212e^-4	INTRON CG32698
3R	7511546	3R_7511546_SNP [dm3] 3R_11685824_SNP [dm6]	T	C	1.784e^-8	1.220e^-4	NON_SYNONYMOUS_CODING CG6834	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20324773	X_20324773_INS [dm3] X_20453746_INS [dm6]	A	AA	1.828e^-8	1.241e^-4	INTRON CG32506
X	20324785	X_20324785_SNP [dm3] X_20453758_SNP [dm6]	T	C	1.828e^-8	1.241e^-4	INTRON CG32506
2R	15886460	2R_15886460_SNP [dm3] 2R_19998955_SNP [dm6]	G	T	1.892e^-8	1.280e^-4	INTERGENIC
X	5225166	X_5225166_SNP [dm3] X_5331133_SNP [dm6]	T	C	1.910e^-8	1.288e^-4	NON_SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8243241	3L_8243241_SNP [dm3] 3L_8250141_SNP [dm6]	A	G	2.029e^-8	1.362e^-4	INTRON Dscam4
X	12661552	X_12661552_SNP [dm3] X_12767519_SNP [dm6]	C	T	2.035e^-8	1.362e^-4	INTRON CG3812
3R	17891190	3R_17891190_SNP [dm3] 3R_22065468_SNP [dm6]	A	C	2.081e^-8	1.388e^-4	INTRON how
3L	14734085	3L_14734085_SNP [dm3] 3L_14740985_SNP [dm6]	G	T	2.338e^-8	1.553e^-4	INTRON ome
X	20324787	X_20324787_SNP [dm3] X_20453760_SNP [dm6]	T	G	2.384e^-8	1.578e^-4	INTRON CG32506
3L	15372340	3L_15372340_SNP [dm3] 3L_15379240_SNP [dm6]	G	A	2.605e^-8	1.719e^-4	INTERGENIC
3L	12028199	3L_12028199_SNP [dm3] 3L_12035099_SNP [dm6]	G	A	2.661e^-8	1.749e^-4	INTRON rols	TF binding site BDTNP1_TFBS_twi
3R	22590083	3R_22590083_SNP [dm3] 3R_26764361_SNP [dm6]	T	C	2.690e^-8	1.762e^-4	INTERGENIC
3L	22597306	3L_22597306_SNP [dm3] 3L_22604206_SNP [dm6]	T	C	2.726e^-8	1.779e^-4	INTRON CG14459
3L	16080932	3L_16080932_SNP [dm3] 3L_16087832_SNP [dm6]	T	C	2.756e^-8	1.793e^-4	UTR_3_PRIME CG5235 UPSTREAM Taspase1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	19740121	X_19740121_SNP [dm3] X_19846088_SNP [dm6]	C	T	2.812e^-8	1.823e^-4	UPSTREAM pico INTRON pico
3R	7507782	3R_7507782_SNP [dm3] 3R_11682060_SNP [dm6]	C	T	2.923e^-8	1.879e^-4	SYNONYMOUS_CODING CG6830
3R	27336165	3R_27336165_SNP [dm3] 3R_31510443_SNP [dm6]	G	T	2.928e^-8	1.879e^-4	INTERGENIC
3R	27350797	3R_27350797_DEL [dm3] 3R_31525075_DEL [dm6]	ACTTC	A	2.928e^-8	1.879e^-4	INTERGENIC
3L	16655338	3L_16655338_SNP [dm3] 3L_16662238_SNP [dm6]	G	A	2.992e^-8	1.913e^-4	UPSTREAM Baldspot DOWNSTREAM Galphaf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	22905179	3R_22905179_SNP [dm3] 3R_27079457_SNP [dm6]	G	A	3.302e^-8	2.104e^-4	INTRON CG14257	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25968279	3R_25968279_SNP [dm3] 3R_30142557_SNP [dm6]	G	T	3.321e^-8	2.108e^-4	INTRON AdoR
3R	5063868	3R_5063868_SNP [dm3] 3R_9238146_SNP [dm6]	G	A	3.422e^-8	2.165e^-4	UTR_3_PRIME D1 UPSTREAM pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9726313	3R_9726313_SNP [dm3] 3R_13900591_SNP [dm6]	G	T	3.521e^-8	2.221e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12569641	3L_12569641_SNP [dm3] 3L_12576541_SNP [dm6]	C	T	3.652e^-8	2.295e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
3R	26236718	3R_26236718_SNP [dm3] 3R_30410996_SNP [dm6]	T	G	3.728e^-8	2.335e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	10354852	3L_10354852_SNP [dm3] 3L_10361752_SNP [dm6]	G	C	3.790e^-8	2.366e^-4	EXON CR44327	TF binding site mE1_TFBS_cad
2R	8322734	2R_8322734_SNP [dm3] 2R_12435229_SNP [dm6]	G	C	3.813e^-8	2.373e^-4	NON_SYNONYMOUS_CODING DUBAI UPSTREAM CG30051	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6573545	3L_6573545_SNP [dm3] 3L_6580445_SNP [dm6]	G	C	4.017e^-8	2.491e^-4	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7507768	3R_7507768_SNP [dm3] 3R_11682046_SNP [dm6]	C	A	4.036e^-8	2.493e^-4	NON_SYNONYMOUS_CODING CG6830
3L	10852977	3L_10852977_SNP [dm3] 3L_10859877_SNP [dm6]	A	C	4.047e^-8	2.493e^-4	INTRON tna	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25823389	3R_25823389_SNP [dm3] 3R_29997667_SNP [dm6]	A	G	4.108e^-8	2.522e^-4	UTR_5_PRIME CG15525 UPSTREAM CG11504 DOWNSTREAM Sas-6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	9656993	2R_9656993_DEL [dm3] 2R_13769488_DEL [dm6]	TTAATAAACTCTT...	T	4.165e^-8	2.546e^-4	UPSTREAM Cpr50Ca INTERGENIC
3L	22752911	3L_22752911_INS [dm3] 3L_22759811_INS [dm6]	G	GTCTCTGTCT	4.174e^-8	2.546e^-4	UPSTREAM SPoCk INTRON SPoCk
3R	25970163	3R_25970163_SNP [dm3] 3R_30144441_SNP [dm6]	A	T	4.192e^-8	2.549e^-4	INTRON AdoR
2R	5652853	2R_5652853_SNP [dm3] 2R_9765348_SNP [dm6]	T	C	4.325e^-8	2.620e^-4	NON_SYNONYMOUS_CODING trpl UPSTREAM CR44205	TF binding site mE1_TFBS_inv
X	18189216	X_18189216_SNP [dm3] X_18295183_SNP [dm6]	T	G	4.338e^-8	2.620e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3R	7506149	3R_7506149_SNP [dm3] 3R_11680427_SNP [dm6]	C	T	4.387e^-8	2.639e^-4	SYNONYMOUS_CODING Ho UPSTREAM Taf12 DOWNSTREAM CG6830	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	4160704	3L_4160704_SNP [dm3] 3L_4160704_SNP [dm6]	A	G	4.398e^-8	2.639e^-4	UTR_5_PRIME nab DOWNSTREAM mas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	9342905	3R_9342905_SNP [dm3] 3R_13517183_SNP [dm6]	C	T	4.435e^-8	2.653e^-4	INTERGENIC
3L	15479049	3L_15479049_SNP [dm3] 3L_15485949_SNP [dm6]	A	G	4.507e^-8	2.688e^-4	UPSTREAM Ran-like INTERGENIC
3R	27069334	3R_27069334_SNP [dm3] 3R_31243612_SNP [dm6]	T	C	4.533e^-8	2.694e^-4	INTRON qless
2L	5521029	2L_5521029_SNP [dm3] 2L_5521029_SNP [dm6]	A	C	4.581e^-8	2.703e^-4	DOWNSTREAM CG7371 INTRON cl
2R	16573708	2R_16573708_SNP [dm3] 2R_20686203_SNP [dm6]	A	C	4.639e^-8	2.703e^-4	SYNONYMOUS_CODING Gr57a
X	18183006	X_18183006_SNP [dm3] X_18288973_SNP [dm6]	C	A	4.727e^-8	2.703e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	10987697	2L_10987697_SNP [dm3] 2L_10987697_SNP [dm6]	A	T	4.772e^-8	2.703e^-4	UPSTREAM CG12253 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
X	5225377	X_5225377_SNP [dm3] X_5331344_SNP [dm6]	A	T	4.794e^-8	2.703e^-4	SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_sens
3L	8873815	3L_8873815_SNP [dm3] 3L_8880715_SNP [dm6]	A	T	5.004e^-8	2.703e^-4	INTRON dally
3R	26488221	3R_26488221_SNP [dm3] 3R_30662499_SNP [dm6]	G	T	5.058e^-8	2.703e^-4	INTERGENIC
3L	15725352	3L_15725352_SNP [dm3] 3L_15732252_SNP [dm6]	C	T	5.136e^-8	2.703e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7452459	3L_7452459_SNP [dm3] 3L_7459359_SNP [dm6]	C	T	5.185e^-8	2.703e^-4	DOWNSTREAM ppk26 INTERGENIC
3R	26894178	3R_26894178_SNP [dm3] 3R_31068456_SNP [dm6]	T	G	5.288e^-8	2.703e^-4	INTRON Sox100B
3L	12792846	3L_12792846_SNP [dm3] 3L_12799746_SNP [dm6]	T	C	5.289e^-8	2.703e^-4	INTRON Atg1
3R	25823396	3R_25823396_SNP [dm3] 3R_29997674_SNP [dm6]	T	A	5.306e^-8	2.703e^-4	UTR_5_PRIME CG15525 UPSTREAM CG11504 DOWNSTREAM Sas-6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	19535930	2R_19535930_INS [dm3] 2R_23648407_INS [dm6]	T	TGT	5.341e^-8	2.703e^-4	INTRON retn	TF binding site BDTNP1_TFBS_dl
3R	25970120	3R_25970120_SNP [dm3] 3R_30144398_SNP [dm6]	G	T	5.392e^-8	2.703e^-4	INTRON AdoR
3R	25970128	3R_25970128_SNP [dm3] 3R_30144406_SNP [dm6]	G	A	5.392e^-8	2.703e^-4	INTRON AdoR
3L	22860784	3L_22860784_SNP [dm3] 3L_22867684_SNP [dm6]	G	A	5.542e^-8	2.703e^-4	SYNONYMOUS_CODING CG11137 DOWNSTREAM Arf79F & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9342945	3R_9342945_SNP [dm3] 3R_13517223_SNP [dm6]	A	C	5.678e^-8	2.703e^-4	INTERGENIC
2R	13024181	2R_13024181_SNP [dm3] 2R_17136676_SNP [dm6]	T	C	5.769e^-8	2.703e^-4	NON_SYNONYMOUS_CODING Gbp UPSTREAM CG11395 DOWNSTREAM CR44391	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13743694	2R_13743694_SNP [dm3] 2R_17856189_SNP [dm6]	T	A	5.769e^-8	2.703e^-4	UTR_5_PRIME olf186-F INTRON olf186-F	TF binding site mE1_TFBS_Trl
2R	16909485	2R_16909485_SNP [dm3] 2R_21021980_SNP [dm6]	G	C	5.769e^-8	2.703e^-4	SYNONYMOUS_CODING RIC-3 INTRON RIC-3
2R	19546113	2R_19546113_SNP [dm3] 2R_23658590_SNP [dm6]	A	G	5.769e^-8	2.703e^-4	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19546203	2R_19546203_SNP [dm3] 2R_23658680_SNP [dm6]	T	A	5.769e^-8	2.703e^-4	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19547841	2R_19547841_INS [dm3] 2R_23660318_INS [dm6]	G	GGTG	5.769e^-8	2.703e^-4	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19547846	2R_19547846_SNP [dm3] 2R_23660323_SNP [dm6]	C	T	5.769e^-8	2.703e^-4	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5024339	2R_5024339_SNP [dm3] 2R_9136834_SNP [dm6]	C	T	5.769e^-8	2.703e^-4	INTRON alc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	5049031	2R_5049031_SNP [dm3] 2R_9161526_SNP [dm6]	A	G	5.769e^-8	2.703e^-4	UPSTREAM CG8008 DOWNSTREAM CG8046 EXON CR44283	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5050726	2R_5050726_SNP [dm3] 2R_9163221_SNP [dm6]	G	A	5.769e^-8	2.703e^-4	SYNONYMOUS_CODING CG8046	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16078957	3L_16078957_SNP [dm3] 3L_16085857_SNP [dm6]	C	A	5.769e^-8	2.703e^-4	UTR_3_PRIME Taspase1 DOWNSTREAM Taspase1 & 1 other
3L	16086777	3L_16086777_SNP [dm3] 3L_16093677_SNP [dm6]	C	T	5.769e^-8	2.703e^-4	INTRON ClC-c
3L	16090674	3L_16090674_SNP [dm3] 3L_16097574_SNP [dm6]	A	T	5.769e^-8	2.703e^-4	UPSTREAM ms_3_72Dt & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	16090728	3L_16090728_SNP [dm3] 3L_16097628_SNP [dm6]	T	C	5.769e^-8	2.703e^-4	UPSTREAM ms_3_72Dt & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	16090944	3L_16090944_SNP [dm3] 3L_16097844_SNP [dm6]	G	T	5.769e^-8	2.703e^-4	UTR_5_PRIME ms_3_72Dt UPSTREAM CG13074
3L	16091882	3L_16091882_SNP [dm3] 3L_16098782_SNP [dm6]	G	A	5.769e^-8	2.703e^-4	SYNONYMOUS_CODING ms_3_72Dt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16093354	3L_16093354_SNP [dm3] 3L_16100254_SNP [dm6]	T	C	5.769e^-8	2.703e^-4	UPSTREAM CG5414 DOWNSTREAM ms_3_72Dt INTERGENIC
3L	16096186	3L_16096186_SNP [dm3] 3L_16103086_SNP [dm6]	G	A	5.769e^-8	2.703e^-4	NON_SYNONYMOUS_CODING CG5414 DOWNSTREAM IntS9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16100933	3L_16100933_SNP [dm3] 3L_16107833_SNP [dm6]	C	T	5.769e^-8	2.703e^-4	UTR_3_PRIME Zn72D INTRON Zn72D
3L	16107583	3L_16107583_SNP [dm3] 3L_16114483_SNP [dm6]	C	T	5.769e^-8	2.703e^-4	SYNONYMOUS_CODING Taf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	17597624	3L_17597624_SNP [dm3] 3L_17604524_SNP [dm6]	G	C	5.769e^-8	2.703e^-4	INTRON Eip74EF
3L	17597951	3L_17597951_SNP [dm3] 3L_17604851_SNP [dm6]	T	G	5.769e^-8	2.703e^-4	INTRON Eip74EF
3L	4023804	3L_4023804_SNP [dm3] 3L_4023804_SNP [dm6]	T	C	5.769e^-8	2.703e^-4	SYNONYMOUS_CODING CG11594 DOWNSTREAM Mul1	TF binding site mE1_TFBS_chinmo
3L	4292703	3L_4292703_SNP [dm3] 3L_4292703_SNP [dm6]	G	A	5.769e^-8	2.703e^-4	NON_SYNONYMOUS_CODING CG1319 UPSTREAM CG15012	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	7385161	3L_7385161_SNP [dm3] 3L_7392061_SNP [dm6]	A	T	5.769e^-8	2.703e^-4	INTRON CG8563
3L	7385165	3L_7385165_SNP [dm3] 3L_7392065_SNP [dm6]	C	G	5.769e^-8	2.703e^-4	INTRON CG8563
3L	7385168	3L_7385168_SNP [dm3] 3L_7392068_SNP [dm6]	G	A	5.769e^-8	2.703e^-4	INTRON CG8563
3L	7385183	3L_7385183_SNP [dm3] 3L_7392083_SNP [dm6]	C	T	5.769e^-8	2.703e^-4	INTRON CG8563
3R	11044734	3R_11044734_SNP [dm3] 3R_15219012_SNP [dm6]	C	A	5.769e^-8	2.703e^-4	UPSTREAM CG12241 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11044749	3R_11044749_SNP [dm3] 3R_15219027_SNP [dm6]	G	A	5.769e^-8	2.703e^-4	UPSTREAM CG12241 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11044864	3R_11044864_SNP [dm3] 3R_15219142_SNP [dm6]	A	C	5.769e^-8	2.703e^-4	UPSTREAM CG12241 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	12563077	3R_12563077_SNP [dm3] 3R_16737355_SNP [dm6]	C	T	5.769e^-8	2.703e^-4	INTERGENIC	regulatory region REDfly_CRMs
3R	12563105	3R_12563105_SNP [dm3] 3R_16737383_SNP [dm6]	C	T	5.769e^-8	2.703e^-4	INTERGENIC	regulatory region REDfly_CRMs
3R	13583915	3R_13583915_SNP [dm3] 3R_17758193_SNP [dm6]	G	A	5.769e^-8	2.703e^-4	INTRON TyrR
3R	15872378	3R_15872378_SNP [dm3] 3R_20046656_SNP [dm6]	A	C	5.769e^-8	2.703e^-4	DOWNSTREAM Indy-2 INTRON CG17193 & 2 others
3R	15872389	3R_15872389_SNP [dm3] 3R_20046667_SNP [dm6]	C	A	5.769e^-8	2.703e^-4	INTRON CG17193 & 2 others
3R	15872404	3R_15872404_SNP [dm3] 3R_20046682_SNP [dm6]	G	T	5.769e^-8	2.703e^-4	INTRON CG17193 & 2 others
3R	20607629	3R_20607629_SNP [dm3] 3R_24781907_SNP [dm6]	G	A	5.769e^-8	2.703e^-4	NON_SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_inv
3R	26487645	3R_26487645_SNP [dm3] 3R_30661923_SNP [dm6]	T	C	5.769e^-8	2.703e^-4	INTERGENIC
3R	26487728	3R_26487728_SNP [dm3] 3R_30662006_SNP [dm6]	T	C	5.769e^-8	2.703e^-4	INTERGENIC
3R	26503213	3R_26503213_SNP [dm3] 3R_30677491_SNP [dm6]	T	C	5.769e^-8	2.703e^-4	INTERGENIC
3R	26504902	3R_26504902_SNP [dm3] 3R_30679180_SNP [dm6]	C	A	5.769e^-8	2.703e^-4	INTERGENIC
3R	26521232	3R_26521232_SNP [dm3] 3R_30695510_SNP [dm6]	T	C	5.769e^-8	2.703e^-4	UPSTREAM CG12069 DOWNSTREAM Pka-C2 INTERGENIC
3R	6802169	3R_6802169_SNP [dm3] 3R_10976447_SNP [dm6]	T	C	5.769e^-8	2.703e^-4	INTRON CG34114
3R	6805252	3R_6805252_SNP [dm3] 3R_10979530_SNP [dm6]	C	T	5.769e^-8	2.703e^-4	INTRON CG34114
3R	6805311	3R_6805311_SNP [dm3] 3R_10979589_SNP [dm6]	A	G	5.769e^-8	2.703e^-4	INTRON CG34114
X	12821506	X_12821506_SNP [dm3] X_12927473_SNP [dm6]	A	T	5.769e^-8	2.703e^-4	INTRON fne
X	12821521	X_12821521_SNP [dm3] X_12927488_SNP [dm6]	C	T	5.769e^-8	2.703e^-4	INTRON fne
X	12821551	X_12821551_SNP [dm3] X_12927518_SNP [dm6]	T	A	5.769e^-8	2.703e^-4	INTRON fne
X	12821568	X_12821568_SNP [dm3] X_12927535_SNP [dm6]	C	A	5.769e^-8	2.703e^-4	INTRON fne
X	12821581	X_12821581_SNP [dm3] X_12927548_SNP [dm6]	T	A	5.769e^-8	2.703e^-4	INTRON fne
X	12821583	X_12821583_SNP [dm3] X_12927550_SNP [dm6]	A	T	5.769e^-8	2.703e^-4	INTRON fne
X	14966052	X_14966052_DEL [dm3] X_15072019_DEL [dm6]	GCGG	G	5.769e^-8	2.703e^-4	UTR_3_PRIME Lsd-2
X	17357483	X_17357483_SNP [dm3] X_17463450_SNP [dm6]	T	A	5.769e^-8	2.703e^-4	INTRON CG43658
X	17357484	X_17357484_SNP [dm3] X_17463451_SNP [dm6]	T	C	5.769e^-8	2.703e^-4	INTRON CG43658
X	17357506	X_17357506_SNP [dm3] X_17463473_SNP [dm6]	T	G	5.769e^-8	2.703e^-4	INTRON CG43658
X	17357507	X_17357507_SNP [dm3] X_17463474_SNP [dm6]	A	G	5.769e^-8	2.703e^-4	INTRON CG43658
X	19625160	X_19625160_SNP [dm3] X_19731127_SNP [dm6]	A	C	5.769e^-8	2.703e^-4	DOWNSTREAM CG12531 INTRON AP-1-2beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	19626677	X_19626677_SNP [dm3] X_19732644_SNP [dm6]	C	T	5.769e^-8	2.703e^-4	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19627159	X_19627159_SNP [dm3] X_19733126_SNP [dm6]	C	T	5.769e^-8	2.703e^-4	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19628194	X_19628194_SNP [dm3] X_19734161_SNP [dm6]	C	T	5.769e^-8	2.703e^-4	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad
X	19630439	X_19630439_SNP [dm3] X_19736406_SNP [dm6]	T	A	5.769e^-8	2.703e^-4	INTRON CG14234	TF binding site mE1_TFBS_cad
X	19630443	X_19630443_DEL [dm3] X_19736410_DEL [dm6]	TAGGTTGCTCAT...	T	5.769e^-8	2.703e^-4	INTRON CG14234	TF binding site mE1_TFBS_cad
X	20856284	X_20856284_SNP [dm3] X_20985257_SNP [dm6]	G	A	5.769e^-8	2.703e^-4	DOWNSTREAM CG11666 INTERGENIC
X	3148263	X_3148263_SNP [dm3] X_3254230_SNP [dm6]	T	A	5.769e^-8	2.703e^-4	INTRON dnc
X	4537654	X_4537654_SNP [dm3] X_4643621_SNP [dm6]	T	G	5.769e^-8	2.703e^-4	INTRON CG3081 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	6856066	X_6856066_SNP [dm3] X_6962033_SNP [dm6]	C	T	5.769e^-8	2.703e^-4	INTRON CG14431 & 1 other
3R	15820346	3R_15820346_SNP [dm3] 3R_19994624_SNP [dm6]	A	C	5.785e^-8	2.704e^-4	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3R	23494787	3R_23494787_SNP [dm3] 3R_27669065_SNP [dm6]	C	G	5.821e^-8	2.707e^-4	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26493167	3R_26493167_SNP [dm3] 3R_30667445_SNP [dm6]	C	T	5.821e^-8	2.707e^-4	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	12302580	3R_12302580_SNP [dm3] 3R_16476858_SNP [dm6]	A	G	5.899e^-8	2.730e^-4	UPSTREAM Gyc-89Db INTERGENIC
3R	12302581	3R_12302581_SNP [dm3] 3R_16476859_SNP [dm6]	A	G	5.899e^-8	2.730e^-4	UPSTREAM Gyc-89Db INTERGENIC
3R	17012736	3R_17012736_SNP [dm3] 3R_21187014_SNP [dm6]	G	T	5.982e^-8	2.762e^-4	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	25397066	3R_25397066_SNP [dm3] 3R_29571344_SNP [dm6]	G	A	6.129e^-8	2.823e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	1193486	3R_1193486_SNP [dm3] 3R_5367764_SNP [dm6]	A	G	6.151e^-8	2.826e^-4	UPSTREAM CR44103 INTRON Cerk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26069915	3R_26069915_SNP [dm3] 3R_30244193_SNP [dm6]	G	A	6.181e^-8	2.832e^-4	SYNONYMOUS_CODING CG9733 UPSTREAM CG9737
3L	11003204	3L_11003204_SNP [dm3] 3L_11010104_SNP [dm6]	A	T	6.252e^-8	2.858e^-4	UPSTREAM klu INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	12332225	2L_12332225_SNP [dm3] 2L_12332225_SNP [dm6]	A	C	6.568e^-8	2.931e^-4	INTERGENIC
2L	15194239	2L_15194239_SNP [dm3] 2L_15194239_SNP [dm6]	G	C	6.586e^-8	2.931e^-4	INTRON CG4168
3L	14084925	3L_14084925_SNP [dm3] 3L_14091825_SNP [dm6]	A	T	6.712e^-8	2.931e^-4	INTERGENIC
3L	16111559	3L_16111559_DEL [dm3] 3L_16118459_DEL [dm6]	TG	T	6.712e^-8	2.931e^-4	INTRON Taf4	TF binding site mE1_TFBS_cad
3R	26894206	3R_26894206_SNP [dm3] 3R_31068484_SNP [dm6]	A	T	6.722e^-8	2.931e^-4	INTRON Sox100B
3R	22907692	3R_22907692_SNP [dm3] 3R_27081970_SNP [dm6]	G	C	6.766e^-8	2.931e^-4	NON_SYNONYMOUS_CODING CG14257 INTRON CG14257	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15379932	3L_15379932_SNP [dm3] 3L_15386832_SNP [dm6]	G	A	6.788e^-8	2.931e^-4	INTERGENIC	TF binding site mE1_TFBS_inv
3L	14088468	3L_14088468_SNP [dm3] 3L_14095368_SNP [dm6]	G	A	6.933e^-8	2.931e^-4	SYNONYMOUS_CODING Fbp1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15249385	3R_15249385_DEL [dm3] 3R_19423663_DEL [dm6]	AAGAGCTA	A	6.951e^-8	2.931e^-4	DOWNSTREAM CG3517 INTRON CG31221
3R	15249409	3R_15249409_SNP [dm3] 3R_19423687_SNP [dm6]	T	C	6.951e^-8	2.931e^-4	DOWNSTREAM CG3517 INTRON CG31221
3R	15249422	3R_15249422_SNP [dm3] 3R_19423700_SNP [dm6]	G	A	6.951e^-8	2.931e^-4	DOWNSTREAM CG3517 INTRON CG31221
3L	22858413	3L_22858413_SNP [dm3] 3L_22865313_SNP [dm6]	T	A	7.126e^-8	2.931e^-4	UPSTREAM CG33170 DOWNSTREAM CG33169 INTRON CG33170	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	14169330	2R_14169330_SNP [dm3] 2R_18281825_SNP [dm6]	G	A	7.131e^-8	2.931e^-4	NON_SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19548249	2R_19548249_SNP [dm3] 2R_23660726_SNP [dm6]	A	G	7.131e^-8	2.931e^-4	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19548250	2R_19548250_SNP [dm3] 2R_23660727_SNP [dm6]	T	C	7.131e^-8	2.931e^-4	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16095496	3L_16095496_SNP [dm3] 3L_16102396_SNP [dm6]	C	T	7.223e^-8	2.931e^-4	NON_SYNONYMOUS_CODING CG5414 SPLICE_SITE_REGION CG5414
3R	12033620	3R_12033620_SNP [dm3] 3R_16207898_SNP [dm6]	T	A	7.233e^-8	2.931e^-4	UPSTREAM CR45640 DOWNSTREAM CR45639 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
3R	12033709	3R_12033709_SNP [dm3] 3R_16207987_SNP [dm6]	C	G	7.233e^-8	2.931e^-4	UPSTREAM CR45640 DOWNSTREAM CR45639 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
2R	13673339	2R_13673339_SNP [dm3] 2R_17785834_SNP [dm6]	C	T	7.257e^-8	2.931e^-4	UPSTREAM aft INTERGENIC
2R	4742193	2R_4742193_SNP [dm3] 2R_8854688_SNP [dm6]	C	T	7.313e^-8	2.931e^-4	UTR_3_PRIME sns
2R	5064126	2R_5064126_SNP [dm3] 2R_9176621_SNP [dm6]	G	A	7.313e^-8	2.931e^-4	SYNONYMOUS_CODING Rme-8	TF binding site BDTNP1_TFBS_dl
2R	6972369	2R_6972369_SNP [dm3] 2R_11084864_SNP [dm6]	C	A	7.313e^-8	2.931e^-4	UPSTREAM CG43188 INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8339742	2R_8339742_SNP [dm3] 2R_12452237_SNP [dm6]	T	C	7.313e^-8	2.931e^-4	UTR_3_PRIME Dyb UPSTREAM Lac DOWNSTREAM Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	16091879	3L_16091879_SNP [dm3] 3L_16098779_SNP [dm6]	C	T	7.313e^-8	2.931e^-4	SYNONYMOUS_CODING ms_3_72Dt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16099022	3L_16099022_SNP [dm3] 3L_16105922_SNP [dm6]	A	C	7.313e^-8	2.931e^-4	UPSTREAM IntS9 DOWNSTREAM Zn72D INTRON CG43295
3L	4636500	3L_4636500_SNP [dm3] 3L_4636500_SNP [dm6]	C	A	7.313e^-8	2.931e^-4	DOWNSTREAM axo INTRON axo
3R	11042962	3R_11042962_SNP [dm3] 3R_15217240_SNP [dm6]	G	A	7.313e^-8	2.931e^-4	SYNONYMOUS_CODING SIDL	TF binding site mE1_TFBS_cad
3R	18218081	3R_18218081_SNP [dm3] 3R_22392359_SNP [dm6]	A	C	7.313e^-8	2.931e^-4	UTR_3_PRIME CG13857 DOWNSTREAM CG7059
3R	24441834	3R_24441834_SNP [dm3] 3R_28616112_SNP [dm6]	A	G	7.313e^-8	2.931e^-4	UTR_5_PRIME CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26490887	3R_26490887_SNP [dm3] 3R_30665165_SNP [dm6]	G	A	7.313e^-8	2.931e^-4	INTRON CR45191
3R	26523299	3R_26523299_SNP [dm3] 3R_30697577_SNP [dm6]	T	C	7.313e^-8	2.931e^-4	UPSTREAM Pka-C2 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8968761	3R_8968761_SNP [dm3] 3R_13143039_SNP [dm6]	C	T	7.313e^-8	2.931e^-4	INTRON timeout & 2 others
X	19626119	X_19626119_SNP [dm3] X_19732086_SNP [dm6]	C	T	7.313e^-8	2.931e^-4	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	19739485	X_19739485_SNP [dm3] X_19845452_SNP [dm6]	A	T	7.313e^-8	2.931e^-4	INTRON pico	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15477260	2R_15477260_SNP [dm3] 2R_19589755_SNP [dm6]	G	T	7.343e^-8	2.931e^-4	INTRON sm
2R	15945519	2R_15945519_SNP [dm3] 2R_20058014_SNP [dm6]	T	A	7.343e^-8	2.931e^-4	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
2R	15945645	2R_15945645_SNP [dm3] 2R_20058140_SNP [dm6]	A	G	7.343e^-8	2.931e^-4	EXON CR44631	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16703359	2R_16703359_SNP [dm3] 2R_20815854_SNP [dm6]	C	T	7.343e^-8	2.931e^-4	INTERGENIC
3L	9523928	3L_9523928_SNP [dm3] 3L_9530828_SNP [dm6]	A	T	7.343e^-8	2.931e^-4	SYNONYMOUS_CODING Or67a
3R	6070015	3R_6070015_SNP [dm3] 3R_10244293_SNP [dm6]	T	C	7.343e^-8	2.931e^-4	SYNONYMOUS_CODING CG42795
3R	6070412	3R_6070412_SNP [dm3] 3R_10244690_SNP [dm6]	A	C	7.343e^-8	2.931e^-4	NON_SYNONYMOUS_CODING CG42795	TF binding site mE1_TFBS_cad
3R	6070693	3R_6070693_SNP [dm3] 3R_10244971_SNP [dm6]	G	T	7.343e^-8	2.931e^-4	SYNONYMOUS_CODING CG42795	TF binding site mE1_TFBS_cad
3R	6070726	3R_6070726_SNP [dm3] 3R_10245004_SNP [dm6]	G	A	7.343e^-8	2.931e^-4	NON_SYNONYMOUS_CODING CG42795	TF binding site mE1_TFBS_cad
3R	6070735	3R_6070735_SNP [dm3] 3R_10245013_SNP [dm6]	T	C	7.343e^-8	2.931e^-4	SYNONYMOUS_CODING CG42795	TF binding site mE1_TFBS_cad
3R	6806402	3R_6806402_SNP [dm3] 3R_10980680_SNP [dm6]	G	C	7.343e^-8	2.931e^-4	INTRON CG34114	TF binding site mE1_TFBS_cad
X	2574671	X_2574671_SNP [dm3] X_2680638_SNP [dm6]	A	G	7.343e^-8	2.931e^-4	SYNONYMOUS_CODING HLH3B	TF binding site mE1_TFBS_chinmo
3R	18864951	3R_18864951_SNP [dm3] 3R_23039229_SNP [dm6]	G	A	7.347e^-8	2.931e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	16287575	3L_16287575_SNP [dm3] 3L_16294475_SNP [dm6]	A	T	7.367e^-8	2.931e^-4	DOWNSTREAM CG4962 INTERGENIC	TF binding site mE1_TFBS_sbb
2R	7086905	2R_7086905_SNP [dm3] 2R_11199400_SNP [dm6]	T	C	7.376e^-8	2.931e^-4	INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_zfh1
2R	7086920	2R_7086920_SNP [dm3] 2R_11199415_SNP [dm6]	C	G	7.376e^-8	2.931e^-4	INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16113377	3L_16113377_SNP [dm3] 3L_16120277_SNP [dm6]	T	A	7.376e^-8	2.931e^-4	UTR_3_PRIME Taf4	TF binding site mE1_TFBS_cad
3L	5008812	3L_5008812_SNP [dm3] 3L_5008812_SNP [dm6]	C	T	7.402e^-8	2.931e^-4	INTRON Con
X	2944753	X_2944753_SNP [dm3] X_3050720_SNP [dm6]	A	T	7.436e^-8	2.931e^-4	INTRON kirre
X	2944802	X_2944802_SNP [dm3] X_3050769_SNP [dm6]	G	A	7.436e^-8	2.931e^-4	INTRON kirre
2R	9645132	2R_9645132_SNP [dm3] 2R_13757627_SNP [dm6]	G	A	7.451e^-8	2.931e^-4	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_sens
2R	9646545	2R_9646545_SNP [dm3] 2R_13759040_SNP [dm6]	C	A	7.451e^-8	2.931e^-4	DOWNSTREAM CG6280 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11038972	3L_11038972_SNP [dm3] 3L_11045872_SNP [dm6]	T	C	7.451e^-8	2.931e^-4	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_Trl
3L	16083083	3L_16083083_SNP [dm3] 3L_16089983_SNP [dm6]	C	T	7.451e^-8	2.931e^-4	SYNONYMOUS_CODING CG5235 UPSTREAM ClC-c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7484216	3L_7484216_SNP [dm3] 3L_7491116_SNP [dm6]	C	A	7.451e^-8	2.931e^-4	UPSTREAM Cyp316a1 INTERGENIC
3R	12563560	3R_12563560_SNP [dm3] 3R_16737838_SNP [dm6]	T	C	7.451e^-8	2.931e^-4	INTERGENIC
3R	12736249	3R_12736249_SNP [dm3] 3R_16910527_SNP [dm6]	A	G	7.451e^-8	2.931e^-4	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	26483198	3R_26483198_SNP [dm3] 3R_30657476_SNP [dm6]	C	G	7.451e^-8	2.931e^-4	INTERGENIC
3R	3475135	3R_3475135_SNP [dm3] 3R_7649413_SNP [dm6]	C	T	7.451e^-8	2.931e^-4	INTERGENIC
3R	3490470	3R_3490470_SNP [dm3] 3R_7664748_SNP [dm6]	G	T	7.451e^-8	2.931e^-4	INTRON Nlg1
3R	3629905	3R_3629905_SNP [dm3] 3R_7804183_SNP [dm6]	C	T	7.451e^-8	2.931e^-4	NON_SYNONYMOUS_CODING CG18268 DOWNSTREAM CG2993
3R	3644006	3R_3644006_SNP [dm3] 3R_7818284_SNP [dm6]	G	A	7.451e^-8	2.931e^-4	INTRON CG34384
3L	17185865	3L_17185865_SNP [dm3] 3L_17192765_SNP [dm6]	C	T	7.499e^-8	2.943e^-4	INTRON Rbp6
3R	12302557	3R_12302557_SNP [dm3] 3R_16476835_SNP [dm6]	G	A	7.663e^-8	2.995e^-4	UPSTREAM Gyc-89Db INTERGENIC
3R	22959153	3R_22959153_INS [dm3] 3R_27133431_INS [dm6]	C	CCCA	7.695e^-8	2.995e^-4	INTRON CG6051
3R	16997565	3R_16997565_SNP [dm3] 3R_21171843_SNP [dm6]	T	C	7.745e^-8	2.995e^-4	INTRON SNF4Agamma
2R	14549939	2R_14549939_INS [dm3] 2R_18662434_INS [dm6]	A	AT	7.776e^-8	2.995e^-4	UPSTREAM Gint3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14549944	2R_14549944_DEL [dm3] 2R_18662439_DEL [dm6]	GTC	G	7.776e^-8	2.995e^-4	UPSTREAM Gint3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19546452	2R_19546452_SNP [dm3] 2R_23658929_SNP [dm6]	A	C	7.776e^-8	2.995e^-4	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	3546593	2R_3546593_SNP [dm3] 2R_7659088_SNP [dm6]	A	T	7.776e^-8	2.995e^-4	DOWNSTREAM CG1339 & 1 other INTERGENIC
2R	3546611	2R_3546611_SNP [dm3] 2R_7659106_SNP [dm6]	A	G	7.776e^-8	2.995e^-4	DOWNSTREAM CG1339 & 1 other INTERGENIC
2R	5217280	2R_5217280_SNP [dm3] 2R_9329775_SNP [dm6]	T	C	7.776e^-8	2.995e^-4	INTRON CG13954 & 1 other
3R	9724300	3R_9724300_SNP [dm3] 3R_13898578_SNP [dm6]	C	G	7.833e^-8	3.007e^-4	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	10549098	3L_10549098_SNP [dm3] 3L_10555998_SNP [dm6]	A	T	7.868e^-8	3.007e^-4	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
3L	16101074	3L_16101074_SNP [dm3] 3L_16107974_SNP [dm6]	G	T	7.871e^-8	3.007e^-4	UTR_3_PRIME Zn72D INTRON Zn72D
3L	16145813	3L_16145813_DEL [dm3] 3L_16152713_DEL [dm6]	TT	T	7.871e^-8	3.007e^-4	INTRON CG5151	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8149188	3L_8149188_SNP [dm3] 3L_8156088_SNP [dm6]	G	C	7.926e^-8	3.016e^-4	INTRON CG42445
2R	16593600	2R_16593600_SNP [dm3] 2R_20706095_SNP [dm6]	A	G	7.927e^-8	3.016e^-4	INTRON dpr
3R	15249403	3R_15249403_SNP [dm3] 3R_19423681_SNP [dm6]	A	G	8.095e^-8	3.073e^-4	DOWNSTREAM CG3517 INTRON CG31221
3R	7194375	3R_7194375_DEL [dm3] 3R_11368653_DEL [dm6]	CGCCTCCTCCTCC...	C	8.159e^-8	3.091e^-4	INTRON pros	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	14084008	3L_14084008_SNP [dm3] 3L_14090908_SNP [dm6]	C	T	8.263e^-8	3.125e^-4	INTERGENIC
3R	25581647	3R_25581647_DEL [dm3] 3R_29755925_DEL [dm6]	TGAAACT	T	8.523e^-8	3.216e^-4	EXON CR44953
2R	15945598	2R_15945598_SNP [dm3] 2R_20058093_SNP [dm6]	G	A	8.639e^-8	3.254e^-4	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16985721	2R_16985721_SNP [dm3] 2R_21098216_SNP [dm6]	C	T	8.847e^-8	3.316e^-4	SYNONYMOUS_CODING CG34396 UPSTREAM CG4038 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26878469	3R_26878469_INS [dm3] 3R_31052747_INS [dm6]	A	AA	9.038e^-8	3.316e^-4	UTR_3_PRIME l_3_03670 DOWNSTREAM Aph-4	TF binding site mE1_TFBS_sbb
3L	4837872	3L_4837872_SNP [dm3] 3L_4837872_SNP [dm6]	A	T	9.046e^-8	3.316e^-4	UTR_3_PRIME CG13707
2R	9088397	2R_9088397_SNP [dm3] 2R_13200892_SNP [dm6]	G	T	9.068e^-8	3.316e^-4	NON_SYNONYMOUS_CODING Aats-val INTRON Aats-val	TF binding site mE1_TFBS_cad
2R	4564232	2R_4564232_DEL [dm3] 2R_8676727_DEL [dm6]	TGAAATACTT	T	9.120e^-8	3.316e^-4	UPSTREAM CG30354 INTRON Acsl
3L	23097445	3L_23097445_SNP [dm3] 3L_23104345_SNP [dm6]	A	G	9.124e^-8	3.316e^-4	DOWNSTREAM CkIIalpha INTERGENIC	transposable element FlyBase
2R	19074713	2R_19074713_SNP [dm3] 2R_23187190_SNP [dm6]	G	A	9.150e^-8	3.316e^-4	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	22855146	3L_22855146_SNP [dm3] 3L_22862046_SNP [dm6]	A	G	9.161e^-8	3.316e^-4	DOWNSTREAM CG13239 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	22855291	3L_22855291_SNP [dm3] 3L_22862191_SNP [dm6]	G	C	9.161e^-8	3.316e^-4	DOWNSTREAM CG13239 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	9770453	3L_9770453_SNP [dm3] 3L_9777353_SNP [dm6]	T	C	9.199e^-8	3.316e^-4	INTRON CG8177
3L	9770485	3L_9770485_SNP [dm3] 3L_9777385_SNP [dm6]	C	G	9.199e^-8	3.316e^-4	INTRON CG8177
3L	9770499	3L_9770499_INS [dm3] 3L_9777399_INS [dm6]	A	ACTTTCA	9.199e^-8	3.316e^-4	INTRON CG8177
3L	9770551	3L_9770551_SNP [dm3] 3L_9777451_SNP [dm6]	A	C	9.199e^-8	3.316e^-4	INTRON CG8177
2R	15788937	2R_15788937_SNP [dm3] 2R_19901432_SNP [dm6]	G	C	9.204e^-8	3.316e^-4	INTERGENIC
3R	22897677	3R_22897677_SNP [dm3] 3R_27071955_SNP [dm6]	T	C	9.215e^-8	3.316e^-4	INTERGENIC
2R	9240675	2R_9240675_SNP [dm3] 2R_13353170_SNP [dm6]	C	T	9.271e^-8	3.316e^-4	DOWNSTREAM CG17048 INTRON CR44206
3L	17447197	3L_17447197_SNP [dm3] 3L_17454097_SNP [dm6]	A	G	9.271e^-8	3.316e^-4	UTR_3_PRIME CG18265
3R	26136115	3R_26136115_SNP [dm3] 3R_30310393_SNP [dm6]	A	G	9.271e^-8	3.316e^-4	INTRON hdc
3R	7520441	3R_7520441_DEL [dm3] 3R_11694719_DEL [dm6]	AAAAATA	A	9.271e^-8	3.316e^-4	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	7520451	3R_7520451_SNP [dm3] 3R_11694729_SNP [dm6]	G	T	9.271e^-8	3.316e^-4	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	12041112	3L_12041112_SNP [dm3] 3L_12048012_SNP [dm6]	T	A	9.309e^-8	3.316e^-4	INTRON rols
3L	12041120	3L_12041120_SNP [dm3] 3L_12048020_SNP [dm6]	A	T	9.309e^-8	3.316e^-4	INTRON rols
3L	8961436	3L_8961436_SNP [dm3] 3L_8968336_SNP [dm6]	A	T	9.309e^-8	3.316e^-4	UPSTREAM CG5026 DOWNSTREAM CG5021 INTERGENIC
3R	6056134	3R_6056134_SNP [dm3] 3R_10230412_SNP [dm6]	T	A	9.309e^-8	3.316e^-4	INTRON CG42795
3R	6805090	3R_6805090_SNP [dm3] 3R_10979368_SNP [dm6]	A	T	9.309e^-8	3.316e^-4	INTRON CG34114
3R	6805101	3R_6805101_SNP [dm3] 3R_10979379_SNP [dm6]	C	A	9.309e^-8	3.316e^-4	INTRON CG34114
2R	5017001	2R_5017001_SNP [dm3] 2R_9129496_SNP [dm6]	T	C	9.312e^-8	3.316e^-4	INTRON CG18659
3R	26108602	3R_26108602_SNP [dm3] 3R_30282880_SNP [dm6]	C	A	9.312e^-8	3.316e^-4	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	2146439	3R_2146439_SNP [dm3] 3R_6320717_SNP [dm6]	T	C	9.322e^-8	3.316e^-4	INTRON Osi17
X	2944703	X_2944703_SNP [dm3] X_3050670_SNP [dm6]	G	T	9.350e^-8	3.318e^-4	INTRON kirre
3L	8950427	3L_8950427_SNP [dm3] 3L_8957327_SNP [dm6]	G	A	9.382e^-8	3.318e^-4	SYNONYMOUS_CODING mRpL12 DOWNSTREAM GNBP3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	12033608	3R_12033608_SNP [dm3] 3R_16207886_SNP [dm6]	T	G	9.400e^-8	3.318e^-4	UPSTREAM CR45640 DOWNSTREAM CR45639 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	18610303	X_18610303_SNP [dm3] X_18716270_SNP [dm6]	G	A	9.403e^-8	3.318e^-4	INTRON CCKLR-17D1
2R	5053204	2R_5053204_SNP [dm3] 2R_9165699_SNP [dm6]	T	C	9.427e^-8	3.318e^-4	UTR_5_PRIME Rad51C UPSTREAM CG8046 DOWNSTREAM CG42382	TF binding site BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	17839441	2R_17839441_SNP [dm3] 2R_21951936_SNP [dm6]	G	A	9.461e^-8	3.318e^-4	SYNONYMOUS_CODING CG13488
3L	22856769	3L_22856769_SNP [dm3] 3L_22863669_SNP [dm6]	C	A	9.485e^-8	3.318e^-4	UPSTREAM CG33169 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_cad
3R	5049118	3R_5049118_INS [dm3] 3R_9223396_INS [dm6]	C	CTC	9.488e^-8	3.318e^-4	INTRON pum
X	19627291	X_19627291_SNP [dm3] X_19733258_SNP [dm6]	C	T	9.488e^-8	3.318e^-4	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7234690	2L_7234690_SNP [dm3] 2L_7234690_SNP [dm6]	C	T	9.574e^-8	3.339e^-4	SYNONYMOUS_CODING Ndae1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9641082	2R_9641082_SNP [dm3] 2R_13753577_SNP [dm6]	C	G	9.638e^-8	3.339e^-4	UPSTREAM CG6280 INTERGENIC
3L	16108425	3L_16108425_SNP [dm3] 3L_16115325_SNP [dm6]	T	A	9.638e^-8	3.339e^-4	INTRON Taf4	TF binding site BDTNP1_TFBS_dl
3R	21110740	3R_21110740_SNP [dm3] 3R_25285018_SNP [dm6]	G	C	9.638e^-8	3.339e^-4	NON_SYNONYMOUS_CODING CG31300 UPSTREAM CG31104
3R	3471465	3R_3471465_SNP [dm3] 3R_7645743_SNP [dm6]	T	G	9.638e^-8	3.339e^-4	INTERGENIC
3L	9791235	3L_9791235_SNP [dm3] 3L_9798135_SNP [dm6]	A	T	9.748e^-8	3.371e^-4	UPSTREAM Ilp1 & 2 others INTERGENIC
3L	12015393	3L_12015393_SNP [dm3] 3L_12022293_SNP [dm6]	C	T	9.798e^-8	3.374e^-4	INTRON rols
2R	19546308	2R_19546308_SNP [dm3] 2R_23658785_SNP [dm6]	T	C	9.849e^-8	3.374e^-4	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19546318	2R_19546318_SNP [dm3] 2R_23658795_SNP [dm6]	T	C	9.849e^-8	3.374e^-4	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19548142	2R_19548142_SNP [dm3] 2R_23660619_SNP [dm6]	C	T	9.849e^-8	3.374e^-4	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	4748297	2R_4748297_SNP [dm3] 2R_8860792_SNP [dm6]	G	A	9.849e^-8	3.374e^-4	INTRON RyR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7086928	2R_7086928_SNP [dm3] 2R_11199423_SNP [dm6]	T	C	9.939e^-8	3.399e^-4	INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_zfh1
2R	4470189	2R_4470189_SNP [dm3] 2R_8582684_SNP [dm6]	T	G	1.008e^-7	3.441e^-4	INTRON CG42326
3L	13298766	3L_13298766_SNP [dm3] 3L_13305666_SNP [dm6]	C	T	1.018e^-7	3.458e^-4	INTERGENIC
3L	16108248	3L_16108248_SNP [dm3] 3L_16115148_SNP [dm6]	T	C	1.018e^-7	3.458e^-4	INTRON Taf4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19626170	X_19626170_SNP [dm3] X_19732137_SNP [dm6]	T	C	1.018e^-7	3.458e^-4	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	11490347	2R_11490347_SNP [dm3] 2R_15602842_SNP [dm6]	T	C	1.025e^-7	3.472e^-4	INTERGENIC
3L	8806788	3L_8806788_SNP [dm3] 3L_8813688_SNP [dm6]	G	A	1.030e^-7	3.484e^-4	INTERGENIC
2L	6811268	2L_6811268_SNP [dm3] 2L_6811268_SNP [dm6]	G	A	1.058e^-7	3.573e^-4	INTERGENIC
2R	19546440	2R_19546440_INS [dm3] 2R_23658917_INS [dm6]	A	AGTTGAG	1.063e^-7	3.576e^-4	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19546444	2R_19546444_INS [dm3] 2R_23658921_INS [dm6]	A	AGTACTTTCCATGTGAGCCC...	1.063e^-7	3.576e^-4	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	10986023	2L_10986023_SNP [dm3] 2L_10986023_SNP [dm6]	C	A	1.082e^-7	3.618e^-4	NON_SYNONYMOUS_CODING piwi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	8717885	2R_8717885_SNP [dm3] 2R_12830380_SNP [dm6]	C	A	1.083e^-7	3.618e^-4	INTERGENIC
2R	786169	2R_786169_SNP [dm3] 2R_4898664_SNP [dm6]	A	G	1.083e^-7	3.618e^-4	INTRON CG44102	transposable element FlyBase
2R	786170	2R_786170_SNP [dm3] 2R_4898665_SNP [dm6]	T	A	1.083e^-7	3.618e^-4	INTRON CG44102	transposable element FlyBase
2R	13901771	2R_13901771_SNP [dm3] 2R_18014266_SNP [dm6]	C	T	1.091e^-7	3.637e^-4	INTERGENIC
2R	786822	2R_786822_SNP [dm3] 2R_4899317_SNP [dm6]	T	C	1.096e^-7	3.647e^-4	INTRON CG44102	transposable element FlyBase
3R	18523354	3R_18523354_SNP [dm3] 3R_22697632_SNP [dm6]	A	T	1.104e^-7	3.667e^-4	UPSTREAM Cyp6d4 INTRON cd
3L	13297851	3L_13297851_SNP [dm3] 3L_13304751_SNP [dm6]	A	G	1.107e^-7	3.671e^-4	DOWNSTREAM CR44555 INTERGENIC
2R	9095348	2R_9095348_SNP [dm3] 2R_13207843_SNP [dm6]	G	A	1.137e^-7	3.750e^-4	NON_SYNONYMOUS_CODING FLASH	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9106290	2R_9106290_SNP [dm3] 2R_13218785_SNP [dm6]	G	T	1.137e^-7	3.750e^-4	DOWNSTREAM CG4646 INTRON CG4630	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9108835	2R_9108835_SNP [dm3] 2R_13221330_SNP [dm6]	G	T	1.137e^-7	3.750e^-4	SYNONYMOUS_CODING Fsn DOWNSTREAM CG17059	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	18776525	3L_18776525_SNP [dm3] 3L_18783425_SNP [dm6]	C	A	1.141e^-7	3.759e^-4	INTRON ftz-f1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6056140	3R_6056140_SNP [dm3] 3R_10230418_SNP [dm6]	G	A	1.166e^-7	3.822e^-4	INTRON CG42795
2R	16609194	2R_16609194_SNP [dm3] 2R_20721689_SNP [dm6]	A	T	1.169e^-7	3.822e^-4	UPSTREAM CR44660 INTRON dpr
3L	22855081	3L_22855081_SNP [dm3] 3L_22861981_SNP [dm6]	G	T	1.172e^-7	3.822e^-4	DOWNSTREAM CG13239 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	7071019	3L_7071019_SNP [dm3] 3L_7077919_SNP [dm6]	G	A	1.172e^-7	3.822e^-4	UPSTREAM CG8641 INTERGENIC
3L	7073187	3L_7073187_SNP [dm3] 3L_7080087_SNP [dm6]	T	G	1.172e^-7	3.822e^-4	INTERGENIC
3R	12033814	3R_12033814_SNP [dm3] 3R_16208092_SNP [dm6]	A	C	1.173e^-7	3.822e^-4	UPSTREAM CR45640 DOWNSTREAM CR45639 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
3L	8174557	3L_8174557_SNP [dm3] 3L_8181457_SNP [dm6]	G	A	1.179e^-7	3.830e^-4	SYNONYMOUS_CODING CG7979 UPSTREAM mthl7
2R	9494881	2R_9494881_DEL [dm3] 2R_13607376_DEL [dm6]	GTTGCGCAGGATG...	G	1.181e^-7	3.830e^-4	INTERGENIC
2R	9651132	2R_9651132_SNP [dm3] 2R_13763627_SNP [dm6]	C	T	1.182e^-7	3.830e^-4	INTERGENIC
3R	8373758	3R_8373758_SNP [dm3] 3R_12548036_SNP [dm6]	A	T	1.186e^-7	3.831e^-4	UTR_5_PRIME Octbeta3R
3L	9770556	3L_9770556_INS [dm3] 3L_9777456_INS [dm6]	T	TGTTT	1.188e^-7	3.831e^-4	INTRON CG8177
3L	9822875	3L_9822875_SNP [dm3] 3L_9829775_SNP [dm6]	C	A	1.188e^-7	3.831e^-4	UTR_5_PRIME CG43897 INTRON CG43897
2R	17845852	2R_17845852_SNP [dm3] 2R_21958347_SNP [dm6]	C	T	1.199e^-7	3.861e^-4	INTERGENIC
3R	6064668	3R_6064668_SNP [dm3] 3R_10238946_SNP [dm6]	G	A	1.202e^-7	3.861e^-4	INTRON CG42795
X	10913424	X_10913424_DEL [dm3] X_11019391_DEL [dm6]	CC	C	1.206e^-7	3.861e^-4	INTRON CG42339
3R	22215973	3R_22215973_SNP [dm3] 3R_26390251_SNP [dm6]	C	G	1.208e^-7	3.861e^-4	INTERGENIC
3R	8373686	3R_8373686_SNP [dm3] 3R_12547964_SNP [dm6]	C	T	1.208e^-7	3.861e^-4	UTR_5_PRIME Octbeta3R
2R	10954445	2R_10954445_SNP [dm3] 2R_15066940_SNP [dm6]	G	A	1.216e^-7	3.872e^-4	INTERGENIC
X	2944731	X_2944731_SNP [dm3] X_3050698_SNP [dm6]	C	G	1.225e^-7	3.872e^-4	INTRON kirre
3L	11989655	3L_11989655_SNP [dm3] 3L_11996555_SNP [dm6]	G	A	1.238e^-7	3.872e^-4	SYNONYMOUS_CODING Grip163
3L	1937512	3L_1937512_SNP [dm3] 3L_1937512_SNP [dm6]	G	T	1.238e^-7	3.872e^-4	INTRON CG5687
3L	4027247	3L_4027247_SNP [dm3] 3L_4027247_SNP [dm6]	G	A	1.238e^-7	3.872e^-4	INTRON Gr64a
3L	4027248	3L_4027248_SNP [dm3] 3L_4027248_SNP [dm6]	T	A	1.238e^-7	3.872e^-4	INTRON Gr64a
3L	4027253	3L_4027253_SNP [dm3] 3L_4027253_SNP [dm6]	A	G	1.238e^-7	3.872e^-4	INTRON Gr64a
3L	6396284	3L_6396284_SNP [dm3] 3L_6403184_SNP [dm6]	T	A	1.238e^-7	3.872e^-4	INTRON CG42747
3R	26911753	3R_26911753_SNP [dm3] 3R_31086031_SNP [dm6]	C	T	1.238e^-7	3.872e^-4	INTERGENIC
3R	7148040	3R_7148040_SNP [dm3] 3R_11322318_SNP [dm6]	C	T	1.238e^-7	3.872e^-4	INTERGENIC
X	10197300	X_10197300_SNP [dm3] X_10303267_SNP [dm6]	G	A	1.238e^-7	3.872e^-4	INTRON alpha-Man-I
X	20325965	X_20325965_SNP [dm3] X_20454938_SNP [dm6]	T	C	1.238e^-7	3.872e^-4	INTRON CG32506
4	824977	4_824977_SNP [dm3] 4_804351_SNP [dm6]	G	C	1.238e^-7	3.872e^-4	UPSTREAM Sox102F INTRON Sox102F	transposable element FlyBase
2R	12674935	2R_12674935_SNP [dm3] 2R_16787430_SNP [dm6]	G	A	1.271e^-7	3.959e^-4	UTR_5_PRIME CG5522 INTRON CG5522
2R	4335604	2R_4335604_SNP [dm3] 2R_8448099_SNP [dm6]	G	A	1.271e^-7	3.959e^-4	SPLICE_SITE_REGION Cyp4e1 DOWNSTREAM Cyp4e2 INTRON Cyp4e1
2R	15830064	2R_15830064_SNP [dm3] 2R_19942559_SNP [dm6]	G	C	1.276e^-7	3.959e^-4	INTERGENIC
3L	10847464	3L_10847464_SNP [dm3] 3L_10854364_SNP [dm6]	C	T	1.277e^-7	3.959e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18016082	3L_18016082_SNP [dm3] 3L_18022982_SNP [dm6]	T	C	1.277e^-7	3.959e^-4	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
X	19738957	X_19738957_SNP [dm3] X_19844924_SNP [dm6]	C	T	1.297e^-7	4.016e^-4	INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19334498	3L_19334498_SNP [dm3] 3L_19341398_SNP [dm6]	A	G	1.301e^-7	4.020e^-4	UTR_3_PRIME CG32206
2R	13026326	2R_13026326_SNP [dm3] 2R_17138821_SNP [dm6]	T	G	1.306e^-7	4.031e^-4	UTR_3_PRIME CG11395 DOWNSTREAM CG43103
3R	3481711	3R_3481711_SNP [dm3] 3R_7655989_SNP [dm6]	C	A	1.320e^-7	4.066e^-4	INTERGENIC
2L	5574038	2L_5574038_SNP [dm3] 2L_5574038_SNP [dm6]	C	T	1.322e^-7	4.066e^-4	INTERGENIC
3R	22587173	3R_22587173_SNP [dm3] 3R_26761451_SNP [dm6]	A	G	1.343e^-7	4.124e^-4	INTERGENIC
3L	6101981	3L_6101981_SNP [dm3] 3L_6108881_SNP [dm6]	G	C	1.347e^-7	4.127e^-4	INTRON Ets65A
2L	10379770	2L_10379770_SNP [dm3] 2L_10379770_SNP [dm6]	C	T	1.350e^-7	4.127e^-4	UTR_3_PRIME dpr19 UPSTREAM gny	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	8491131	2R_8491131_SNP [dm3] 2R_12603626_SNP [dm6]	A	T	1.351e^-7	4.127e^-4	INTRON Amph
X	18996610	X_18996610_SNP [dm3] X_19102577_SNP [dm6]	T	C	1.384e^-7	4.220e^-4	INTERGENIC
3L	22861312	3L_22861312_SNP [dm3] 3L_22868212_SNP [dm6]	T	C	1.386e^-7	4.221e^-4	UTR_5_PRIME CG11137 DOWNSTREAM Arf79F & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20905238	3R_20905238_SNP [dm3] 3R_25079516_SNP [dm6]	G	T	1.401e^-7	4.259e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	9094670	2R_9094670_SNP [dm3] 2R_13207165_SNP [dm6]	A	T	1.443e^-7	4.379e^-4	NON_SYNONYMOUS_CODING FLASH UPSTREAM lat & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5486969	3R_5486969_SNP [dm3] 3R_9661247_SNP [dm6]	T	G	1.453e^-7	4.402e^-4	INTRON CG9492
3L	11049011	3L_11049011_DEL [dm3] 3L_11055911_DEL [dm6]	GTAGCGTGCCGCTTTTTTA...	T	1.468e^-7	4.441e^-4	INTRON CG7888
X	8803328	X_8803328_SNP [dm3] X_8909295_SNP [dm6]	T	G	1.470e^-7	4.441e^-4	INTRON rdgA
2R	8189493	2R_8189493_SNP [dm3] 2R_12301988_SNP [dm6]	A	C	1.478e^-7	4.456e^-4	DOWNSTREAM SIP2 INTRON CG8850
3R	25025951	3R_25025951_SNP [dm3] 3R_29200229_SNP [dm6]	A	G	1.482e^-7	4.458e^-4	UPSTREAM CG11899 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5224806	X_5224806_SNP [dm3] X_5330773_SNP [dm6]	G	C	1.483e^-7	4.458e^-4	NON_SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8837433	X_8837433_SNP [dm3] X_8943400_SNP [dm6]	C	T	1.508e^-7	4.526e^-4	INTRON rdgA
3R	3513428	3R_3513428_SNP [dm3] 3R_7687706_SNP [dm6]	C	T	1.518e^-7	4.543e^-4	INTRON Nlg1
3R	20617548	3R_20617548_SNP [dm3] 3R_24791826_SNP [dm6]	T	A	1.519e^-7	4.543e^-4	UPSTREAM Ets96B INTRON Ets96B	TF binding site mE1_TFBS_chinmo
3R	3471120	3R_3471120_SNP [dm3] 3R_7645398_SNP [dm6]	A	C	1.524e^-7	4.552e^-4	INTERGENIC
3R	26935084	3R_26935084_SNP [dm3] 3R_31109362_SNP [dm6]	C	T	1.540e^-7	4.552e^-4	UPSTREAM CG11318 INTERGENIC
X	2944732	X_2944732_SNP [dm3] X_3050699_SNP [dm6]	A	T	1.553e^-7	4.552e^-4	INTRON kirre
3L	13816701	3L_13816701_SNP [dm3] 3L_13823601_SNP [dm6]	G	C	1.555e^-7	4.552e^-4	INTERGENIC
2R	16273918	2R_16273918_SNP [dm3] 2R_20386413_SNP [dm6]	A	G	1.559e^-7	4.552e^-4	INTERGENIC
3R	26512833	3R_26512833_SNP [dm3] 3R_30687111_SNP [dm6]	G	T	1.559e^-7	4.552e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26918393	3R_26918393_SNP [dm3] 3R_31092671_SNP [dm6]	G	A	1.559e^-7	4.552e^-4	INTRON CG11317
3R	26918421	3R_26918421_SNP [dm3] 3R_31092699_SNP [dm6]	C	G	1.559e^-7	4.552e^-4	INTRON CG11317
3R	26927768	3R_26927768_SNP [dm3] 3R_31102046_SNP [dm6]	C	T	1.559e^-7	4.552e^-4	UPSTREAM CG15553 INTERGENIC
3R	26935171	3R_26935171_SNP [dm3] 3R_31109449_SNP [dm6]	G	A	1.559e^-7	4.552e^-4	UPSTREAM CG11318 INTERGENIC
3R	26940300	3R_26940300_SNP [dm3] 3R_31114578_SNP [dm6]	C	A	1.559e^-7	4.552e^-4	INTERGENIC
3R	26942029	3R_26942029_SNP [dm3] 3R_31116307_SNP [dm6]	G	A	1.559e^-7	4.552e^-4	INTERGENIC
3R	26960276	3R_26960276_SNP [dm3] 3R_31134554_SNP [dm6]	C	T	1.559e^-7	4.552e^-4	START_GAINED Gycbeta100B UTR_5_PRIME Gycbeta100B
3R	27086381	3R_27086381_SNP [dm3] 3R_31260659_SNP [dm6]	G	A	1.559e^-7	4.552e^-4	DOWNSTREAM CG3669 INTRON CG18672
3R	4246408	3R_4246408_SNP [dm3] 3R_8420686_SNP [dm6]	A	T	1.559e^-7	4.552e^-4	UPSTREAM Obp85a INTRON CG45263
X	10500619	X_10500619_SNP [dm3] X_10606586_SNP [dm6]	C	G	1.567e^-7	4.568e^-4	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_dl
3R	26921887	3R_26921887_SNP [dm3] 3R_31096165_SNP [dm6]	C	T	1.585e^-7	4.609e^-4	INTRON CG11317
3R	5045814	3R_5045814_SNP [dm3] 3R_9220092_SNP [dm6]	T	A	1.585e^-7	4.609e^-4	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	25921522	3R_25921522_SNP [dm3] 3R_30095800_SNP [dm6]	A	T	1.610e^-7	4.673e^-4	INTRON sima
X	15833451	X_15833451_SNP [dm3] X_15939418_SNP [dm6]	G	C	1.616e^-7	4.682e^-4	UPSTREAM Stim INTRON Stim	TF binding site mE1_TFBS_kn
2L	14460525	2L_14460525_SNP [dm3] 2L_14460525_SNP [dm6]	A	G	1.620e^-7	4.688e^-4	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12569371	3L_12569371_SNP [dm3] 3L_12576271_SNP [dm6]	A	C	1.671e^-7	4.822e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
3L	23097298	3L_23097298_SNP [dm3] 3L_23104198_SNP [dm6]	A	G	1.672e^-7	4.822e^-4	DOWNSTREAM CkIIalpha INTERGENIC	transposable element FlyBase
X	18970816	X_18970816_SNP [dm3] X_19076783_SNP [dm6]	T	C	1.688e^-7	4.857e^-4	UPSTREAM CG7406 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	10120005	3R_10120005_INS [dm3] 3R_14294283_INS [dm6]	A	AA	1.690e^-7	4.857e^-4	INTRON CG12207
3L	6101949	3L_6101949_SNP [dm3] 3L_6108849_SNP [dm6]	A	G	1.702e^-7	4.857e^-4	INTRON Ets65A
3L	6101963	3L_6101963_SNP [dm3] 3L_6108863_SNP [dm6]	T	C	1.702e^-7	4.857e^-4	INTRON Ets65A
3R	26943149	3R_26943149_SNP [dm3] 3R_31117427_SNP [dm6]	C	T	1.702e^-7	4.857e^-4	INTERGENIC
3R	26943202	3R_26943202_SNP [dm3] 3R_31117480_SNP [dm6]	A	T	1.702e^-7	4.857e^-4	INTERGENIC
3R	26943217	3R_26943217_SNP [dm3] 3R_31117495_SNP [dm6]	G	C	1.702e^-7	4.857e^-4	INTERGENIC
3R	6858701	3R_6858701_SNP [dm3] 3R_11032979_SNP [dm6]	G	A	1.710e^-7	4.871e^-4	INTRON CG34114
3R	26232255	3R_26232255_SNP [dm3] 3R_30406533_SNP [dm6]	G	A	1.720e^-7	4.893e^-4	INTERGENIC
2R	5006801	2R_5006801_SNP [dm3] 2R_9119296_SNP [dm6]	T	C	1.728e^-7	4.910e^-4	UTR_3_PRIME Su_var_2-10 INTRON Su_var_2-10	TF binding site mE1_TFBS_cad
3L	13250978	3L_13250978_SNP [dm3] 3L_13257878_SNP [dm6]	T	C	1.768e^-7	5.015e^-4	INTRON caps
2R	20608161	2R_20608161_SNP [dm3] 2R_24720638_SNP [dm6]	C	G	1.781e^-7	5.044e^-4	INTRON Mid1	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	19738959	X_19738959_SNP [dm3] X_19844926_SNP [dm6]	G	C	1.794e^-7	5.063e^-4	INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19738960	X_19738960_SNP [dm3] X_19844927_SNP [dm6]	T	G	1.794e^-7	5.063e^-4	INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9385608	3R_9385608_SNP [dm3] 3R_13559886_SNP [dm6]	C	T	1.796e^-7	5.063e^-4	INTERGENIC
2R	6165913	2R_6165913_SNP [dm3] 2R_10278408_SNP [dm6]	A	G	1.834e^-7	5.158e^-4	UPSTREAM CAP INTRON CAP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2R	4470492	2R_4470492_SNP [dm3] 2R_8582987_SNP [dm6]	C	T	1.835e^-7	5.158e^-4	INTRON CG42326
3R	26999827	3R_26999827_SNP [dm3] 3R_31174105_SNP [dm6]	T	C	1.855e^-7	5.205e^-4	INTRON Gycbeta100B
2R	17687623	2R_17687623_SNP [dm3] 2R_21800118_SNP [dm6]	C	T	1.880e^-7	5.259e^-4	SYNONYMOUS_CODING CG4386 UPSTREAM CG18735	TF binding site mE1_TFBS_cad
2R	9194122	2R_9194122_SNP [dm3] 2R_13306617_SNP [dm6]	G	A	1.880e^-7	5.259e^-4	INTERGENIC
2R	8449816	2R_8449816_SNP [dm3] 2R_12562311_SNP [dm6]	A	T	1.906e^-7	5.326e^-4	SYNONYMOUS_CODING CG30056 INTRON fra
2R	16273851	2R_16273851_SNP [dm3] 2R_20386346_SNP [dm6]	G	T	1.926e^-7	5.373e^-4	INTERGENIC
2R	4223432	2R_4223432_SNP [dm3] 2R_8335927_SNP [dm6]	A	T	1.949e^-7	5.428e^-4	INTRON pdm3
3L	20557663	3L_20557663_SNP [dm3] 3L_20564563_SNP [dm6]	G	A	1.959e^-7	5.435e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11595239	3R_11595239_SNP [dm3] 3R_15769517_SNP [dm6]	A	C	1.959e^-7	5.435e^-4	INTERGENIC
2L	10117575	2L_10117575_SNP [dm3] 2L_10117575_SNP [dm6]	C	T	1.960e^-7	5.435e^-4	INTRON CG44153 & 1 other
3L	20312583	3L_20312583_SNP [dm3] 3L_20319483_SNP [dm6]	G	A	1.971e^-7	5.453e^-4	NON_SYNONYMOUS_CODING Spn77Ba	TF binding site mE1_TFBS_HSA
3R	9553642	3R_9553642_SNP [dm3] 3R_13727920_SNP [dm6]	G	C	1.975e^-7	5.453e^-4	INTRON CG34383
2R	19066841	2R_19066841_SNP [dm3] 2R_23179318_SNP [dm6]	G	T	1.976e^-7	5.453e^-4	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17499913	2R_17499913_SNP [dm3] 2R_21612408_SNP [dm6]	A	C	1.988e^-7	5.479e^-4	INTRON CG15673
3R	19314006	3R_19314006_SNP [dm3] 3R_23488284_SNP [dm6]	A	G	1.998e^-7	5.499e^-4	NON_SYNONYMOUS_CODING Ir94h	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23296091	3R_23296091_SNP [dm3] 3R_27470369_SNP [dm6]	T	A	2.014e^-7	5.536e^-4	INTERGENIC
2R	14165812	2R_14165812_SNP [dm3] 2R_18278307_SNP [dm6]	G	C	2.041e^-7	5.599e^-4	UTR_3_PRIME pen-2 & 1 other DOWNSTREAM sbb & 1 other
3R	14894861	3R_14894861_SNP [dm3] 3R_19069139_SNP [dm6]	A	C	2.043e^-7	5.599e^-4	INTRON cdi
3R	7505438	3R_7505438_SNP [dm3] 3R_11679716_SNP [dm6]	T	C	2.066e^-7	5.652e^-4	UPSTREAM Ho & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3R	10169706	3R_10169706_SNP [dm3] 3R_14343984_SNP [dm6]	C	G	2.100e^-7	5.737e^-4	INTRON NK7.1
3R	17172017	3R_17172017_SNP [dm3] 3R_21346295_SNP [dm6]	T	A	2.118e^-7	5.778e^-4	INTRON CG16791	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4967726	2R_4967726_SNP [dm3] 2R_9080221_SNP [dm6]	G	A	2.126e^-7	5.792e^-4	SPLICE_SITE_REGION CG8083 INTRON CG8083
2R	11765558	2R_11765558_SNP [dm3] 2R_15878053_SNP [dm6]	G	T	2.132e^-7	5.792e^-4	INTRON sli
3L	7385075	3L_7385075_SNP [dm3] 3L_7391975_SNP [dm6]	A	T	2.132e^-7	5.792e^-4	INTRON CG8563
3L	5940360	3L_5940360_SNP [dm3] 3L_5947260_SNP [dm6]	A	G	2.139e^-7	5.801e^-4	INTRON CG33993	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8837445	X_8837445_SNP [dm3] X_8943412_SNP [dm6]	T	C	2.146e^-7	5.811e^-4	INTRON rdgA
2R	16985685	2R_16985685_SNP [dm3] 2R_21098180_SNP [dm6]	A	G	2.173e^-7	5.877e^-4	SYNONYMOUS_CODING CG34396 UPSTREAM CG4038 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17739988	2R_17739988_SNP [dm3] 2R_21852483_SNP [dm6]	A	C	2.177e^-7	5.878e^-4	INTERGENIC	TF binding site mE1_TFBS_cad
3R	26236311	3R_26236311_SNP [dm3] 3R_30410589_SNP [dm6]	C	T	2.185e^-7	5.892e^-4	INTERGENIC
2R	4199798	2R_4199798_SNP [dm3] 2R_8312293_SNP [dm6]	T	A	2.194e^-7	5.907e^-4	DOWNSTREAM CR44450 INTERGENIC
3L	4964999	3L_4964999_SNP [dm3] 3L_4964999_SNP [dm6]	C	T	2.199e^-7	5.913e^-4	INTRON Con
3R	14027134	3R_14027134_SNP [dm3] 3R_18201412_SNP [dm6]	T	A	2.240e^-7	6.014e^-4	INTRON CG7985
X	5224801	X_5224801_SNP [dm3] X_5330768_SNP [dm6]	G	A	2.276e^-7	6.101e^-4	SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14067410	3L_14067410_SNP [dm3] 3L_14074310_SNP [dm6]	A	G	2.301e^-7	6.149e^-4	SYNONYMOUS_CODING Pex1	TF binding site mE1_TFBS_sens
3L	14067551	3L_14067551_SNP [dm3] 3L_14074451_SNP [dm6]	G	A	2.301e^-7	6.149e^-4	SYNONYMOUS_CODING Pex1
2R	4962988	2R_4962988_SNP [dm3] 2R_9075483_SNP [dm6]	G	A	2.328e^-7	6.215e^-4	INTRON ana	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9175090	3L_9175090_SNP [dm3] 3L_9181990_SNP [dm6]	G	A	2.362e^-7	6.287e^-4	INTRON Rdl
3L	9175091	3L_9175091_SNP [dm3] 3L_9181991_SNP [dm6]	T	G	2.362e^-7	6.287e^-4	INTRON Rdl
X	5224802	X_5224802_SNP [dm3] X_5330769_SNP [dm6]	A	G	2.366e^-7	6.289e^-4	NON_SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8803275	X_8803275_SNP [dm3] X_8909242_SNP [dm6]	A	G	2.410e^-7	6.397e^-4	INTRON rdgA
2R	8492642	2R_8492642_SNP [dm3] 2R_12605137_SNP [dm6]	A	T	2.417e^-7	6.407e^-4	INTRON Amph
3R	4257993	3R_4257993_SNP [dm3] 3R_8432271_SNP [dm6]	T	A	2.457e^-7	6.503e^-4	INTRON CG45263
3R	26487676	3R_26487676_DEL [dm3] 3R_30661954_DEL [dm6]	AA	A	2.487e^-7	6.549e^-4	INTERGENIC
3R	26487682	3R_26487682_SNP [dm3] 3R_30661960_SNP [dm6]	G	T	2.487e^-7	6.549e^-4	INTERGENIC
2R	5652427	2R_5652427_SNP [dm3] 2R_9764922_SNP [dm6]	T	C	2.489e^-7	6.549e^-4	NON_SYNONYMOUS_CODING trpl
2R	5652609	2R_5652609_SNP [dm3] 2R_9765104_SNP [dm6]	C	G	2.489e^-7	6.549e^-4	NON_SYNONYMOUS_CODING trpl
3R	10884320	3R_10884320_SNP [dm3] 3R_15058598_SNP [dm6]	A	G	2.525e^-7	6.628e^-4	INTRON dpr9
X	18192544	X_18192544_SNP [dm3] X_18298511_SNP [dm6]	T	C	2.526e^-7	6.628e^-4	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	15741617	3L_15741617_SNP [dm3] 3L_15748517_SNP [dm6]	G	T	2.551e^-7	6.684e^-4	EXON CR45240
3L	13249096	3L_13249096_SNP [dm3] 3L_13255996_SNP [dm6]	G	T	2.629e^-7	6.872e^-4	INTRON caps
3L	5855152	3L_5855152_SNP [dm3] 3L_5862052_SNP [dm6]	A	T	2.634e^-7	6.872e^-4	INTERGENIC
3L	5855434	3L_5855434_SNP [dm3] 3L_5862334_SNP [dm6]	C	A	2.634e^-7	6.872e^-4	INTERGENIC
2R	9107410	2R_9107410_SNP [dm3] 2R_13219905_SNP [dm6]	A	T	2.659e^-7	6.928e^-4	UPSTREAM CG4630 & 1 other INTRON CG4646	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	19738940	X_19738940_SNP [dm3] X_19844907_SNP [dm6]	T	A	2.691e^-7	7.003e^-4	INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9160316	3L_9160316_SNP [dm3] 3L_9167216_SNP [dm6]	A	G	2.731e^-7	7.097e^-4	INTRON Rdl
3R	14335077	3R_14335077_DEL [dm3] 3R_18509355_DEL [dm6]	ATTTGCCTCACTTGCACTA...	A	2.772e^-7	7.187e^-4	INTRON fru
2R	10008042	2R_10008042_SNP [dm3] 2R_14120537_SNP [dm6]	C	A	2.774e^-7	7.187e^-4	INTRON Prosap	TF binding site BDTNP1_TFBS_prd
3R	3657671	3R_3657671_SNP [dm3] 3R_7831949_SNP [dm6]	A	C	2.784e^-7	7.201e^-4	INTRON CG34384
2R	17105382	2R_17105382_SNP [dm3] 2R_21217877_SNP [dm6]	T	G	2.787e^-7	7.201e^-4	UTR_3_PRIME ASPP UPSTREAM CG15661
3R	7382528	3R_7382528_SNP [dm3] 3R_11556806_SNP [dm6]	A	G	2.829e^-7	7.295e^-4	UPSTREAM CG10898 INTERGENIC
2L	7281856	2L_7281856_SNP [dm3] 2L_7281856_SNP [dm6]	T	C	2.831e^-7	7.295e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	9152039	2R_9152039_SNP [dm3] 2R_13264534_SNP [dm6]	G	A	2.861e^-7	7.348e^-4	NON_SYNONYMOUS_CODING CG42319 DOWNSTREAM CG42319
3L	14064992	3L_14064992_SNP [dm3] 3L_14071892_SNP [dm6]	T	A	2.861e^-7	7.348e^-4	UTR_5_PRIME Pex1 DOWNSTREAM CG32138	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
X	16510565	X_16510565_SNP [dm3] X_16616532_SNP [dm6]	A	G	2.863e^-7	7.348e^-4	INTRON CG9782	TF binding site BDTNP1_TFBS_twi
X	19762793	X_19762793_DEL [dm3] X_19868760_DEL [dm6]	ATCTGCA	A	2.906e^-7	7.446e^-4	CODON_DELETION Hers	TF binding site mE1_TFBS_chinmo
3L	3529960	3L_3529960_SNP [dm3] 3L_3529960_SNP [dm6]	C	G	2.910e^-7	7.447e^-4	INTRON Eip63E
3L	14067494	3L_14067494_SNP [dm3] 3L_14074394_SNP [dm6]	G	T	2.922e^-7	7.468e^-4	SYNONYMOUS_CODING Pex1	TF binding site mE1_TFBS_sens
3R	5776118	3R_5776118_SNP [dm3] 3R_9950396_SNP [dm6]	C	T	2.929e^-7	7.474e^-4	INTRON Glut4EF
3R	17012793	3R_17012793_SNP [dm3] 3R_21187071_SNP [dm6]	C	A	2.979e^-7	7.583e^-4	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
X	20324504	X_20324504_SNP [dm3] X_20453477_SNP [dm6]	G	T	2.980e^-7	7.583e^-4	INTRON CG32506
3R	26876152	3R_26876152_SNP [dm3] 3R_31050430_SNP [dm6]	A	T	3.008e^-7	7.644e^-4	DOWNSTREAM mir-4948 INTRON Aph-4	TF binding site mE1_TFBS_cad
3R	6046662	3R_6046662_SNP [dm3] 3R_10220940_SNP [dm6]	A	G	3.014e^-7	7.649e^-4	UTR_3_PRIME Syn
3R	26895066	3R_26895066_SNP [dm3] 3R_31069344_SNP [dm6]	C	A	3.021e^-7	7.657e^-4	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5944569	3L_5944569_SNP [dm3] 3L_5951469_SNP [dm6]	A	C	3.037e^-7	7.687e^-4	UPSTREAM CG33993 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	10830896	3R_10830896_SNP [dm3] 3R_15005174_SNP [dm6]	C	T	3.103e^-7	7.843e^-4	UPSTREAM CR45599 INTERGENIC
X	8803281	X_8803281_SNP [dm3] X_8909248_SNP [dm6]	A	G	3.119e^-7	7.872e^-4	INTRON rdgA
X	8803288	X_8803288_SNP [dm3] X_8909255_SNP [dm6]	A	C	3.142e^-7	7.922e^-4	INTRON rdgA
2R	16904663	2R_16904663_SNP [dm3] 2R_21017158_SNP [dm6]	G	A	3.161e^-7	7.958e^-4	SYNONYMOUS_CODING CG3295 UPSTREAM RIC-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	25655902	3R_25655902_SNP [dm3] 3R_29830180_SNP [dm6]	A	G	3.167e^-7	7.963e^-4	INTRON Atg16	TF binding site mE1_TFBS_Trl
3L	17103300	3L_17103300_SNP [dm3] 3L_17110200_SNP [dm6]	A	C	3.202e^-7	8.039e^-4	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19742004	X_19742004_SNP [dm3] X_19847971_SNP [dm6]	G	A	3.333e^-7	8.357e^-4	INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	356524	3R_356524_INS [dm3] 3R_4530802_INS [dm6]	T	TT	3.345e^-7	8.376e^-4	INTRON CG34357
2L	10378452	2L_10378452_SNP [dm3] 2L_10378452_SNP [dm6]	T	C	3.353e^-7	8.385e^-4	INTRON dpr19
3R	19568504	3R_19568504_SNP [dm3] 3R_23742782_SNP [dm6]	G	C	3.405e^-7	8.454e^-4	INTRON Hmgcr
X	20318368	X_20318368_SNP [dm3] X_20447341_SNP [dm6]	G	C	3.408e^-7	8.454e^-4	DOWNSTREAM CG42578 INTERGENIC
X	20318796	X_20318796_SNP [dm3] X_20447769_SNP [dm6]	G	A	3.408e^-7	8.454e^-4	INTERGENIC
X	20319161	X_20319161_SNP [dm3] X_20448134_SNP [dm6]	C	T	3.408e^-7	8.454e^-4	INTERGENIC
X	20320580	X_20320580_SNP [dm3] X_20449553_SNP [dm6]	C	A	3.408e^-7	8.454e^-4	UTR_5_PRIME CG32506
X	20320765	X_20320765_SNP [dm3] X_20449738_SNP [dm6]	G	C	3.408e^-7	8.454e^-4	UTR_5_PRIME CG32506
3L	16287771	3L_16287771_SNP [dm3] 3L_16294671_SNP [dm6]	C	A	3.439e^-7	8.519e^-4	DOWNSTREAM CG4962 INTERGENIC
2R	19402530	2R_19402530_SNP [dm3] 2R_23515007_SNP [dm6]	A	C	3.495e^-7	8.647e^-4	INTERGENIC
3R	5291076	3R_5291076_SNP [dm3] 3R_9465354_SNP [dm6]	T	G	3.509e^-7	8.669e^-4	UTR_3_PRIME CG16779
3R	3688286	3R_3688286_SNP [dm3] 3R_7862564_SNP [dm6]	G	A	3.540e^-7	8.735e^-4	INTRON CG17816
3R	26264974	3R_26264974_SNP [dm3] 3R_30439252_SNP [dm6]	G	A	3.557e^-7	8.765e^-4	INTRON CG15537
3L	16191536	3L_16191536_SNP [dm3] 3L_16198436_SNP [dm6]	T	G	3.634e^-7	8.926e^-4	NON_SYNONYMOUS_CODING CG33687 UPSTREAM CG33688
3L	16191537	3L_16191537_DEL [dm3] 3L_16198437_DEL [dm6]	GGACTGGCAACCTGGAAAGG...	G	3.634e^-7	8.926e^-4	FRAME_SHIFT CG33687 UPSTREAM CG33688
3R	5291082	3R_5291082_SNP [dm3] 3R_9465360_SNP [dm6]	T	C	3.637e^-7	8.926e^-4	UTR_3_PRIME CG16779
3R	2532205	3R_2532205_SNP [dm3] 3R_6706483_SNP [dm6]	A	T	3.658e^-7	8.966e^-4	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	14023387	3R_14023387_SNP [dm3] 3R_18197665_SNP [dm6]	T	C	3.676e^-7	9.000e^-4	INTRON Ssdp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26957494	3R_26957494_SNP [dm3] 3R_31131772_SNP [dm6]	A	T	3.769e^-7	9.213e^-4	UPSTREAM CR43458 INTERGENIC
3R	27325670	3R_27325670_SNP [dm3] 3R_31499948_SNP [dm6]	A	T	3.804e^-7	9.289e^-4	INTRON mey	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7506179	3R_7506179_SNP [dm3] 3R_11680457_SNP [dm6]	C	A	3.847e^-7	9.368e^-4	NON_SYNONYMOUS_CODING Ho UPSTREAM Taf12 DOWNSTREAM CG6830	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	7506197	3R_7506197_SNP [dm3] 3R_11680475_SNP [dm6]	C	T	3.847e^-7	9.368e^-4	SYNONYMOUS_CODING Ho UPSTREAM Taf12 DOWNSTREAM CG6830	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5651834	2R_5651834_SNP [dm3] 2R_9764329_SNP [dm6]	G	T	3.885e^-7	9.449e^-4	SPLICE_SITE_REGION trpl INTRON trpl	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	11131779	2L_11131779_SNP [dm3] 2L_11131779_SNP [dm6]	C	T	3.905e^-7	9.482e^-4	INTRON CG4751	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	19121555	3R_19121555_SNP [dm3] 3R_23295833_SNP [dm6]	T	A	3.909e^-7	9.482e^-4	UPSTREAM pnt INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	10196351	X_10196351_SNP [dm3] X_10302318_SNP [dm6]	G	C	3.914e^-7	9.482e^-4	INTRON alpha-Man-I
2R	11766847	2R_11766847_SNP [dm3] 2R_15879342_SNP [dm6]	C	G	3.975e^-7	9.530e^-4	INTRON sli
2R	11766871	2R_11766871_SNP [dm3] 2R_15879366_SNP [dm6]	G	A	3.975e^-7	9.530e^-4	INTRON sli
2R	6207936	2R_6207936_SNP [dm3] 2R_10320431_SNP [dm6]	G	T	3.975e^-7	9.530e^-4	INTRON Ndg & 1 other
3L	8163377	3L_8163377_SNP [dm3] 3L_8170277_SNP [dm6]	T	C	3.975e^-7	9.530e^-4	DOWNSTREAM RecQ4 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	12545825	3R_12545825_SNP [dm3] 3R_16720103_SNP [dm6]	T	A	3.975e^-7	9.530e^-4	INTRON Ubx	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	12551180	3R_12551180_SNP [dm3] 3R_16725458_SNP [dm6]	C	T	3.975e^-7	9.530e^-4	INTRON Ubx
3R	20316838	3R_20316838_SNP [dm3] 3R_24491116_SNP [dm6]	C	G	3.975e^-7	9.530e^-4	UTR_3_PRIME nAChRalpha2
3R	4052563	3R_4052563_SNP [dm3] 3R_8226841_SNP [dm6]	G	A	3.975e^-7	9.530e^-4	EXON CR45551	TF binding site mE1_TFBS_cad
3L	17103197	3L_17103197_SNP [dm3] 3L_17110097_SNP [dm6]	C	A	3.988e^-7	9.542e^-4	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15079333	X_15079333_SNP [dm3] X_15185300_SNP [dm6]	C	T	3.990e^-7	9.542e^-4	INTRON CG43737
2R	16608174	2R_16608174_SNP [dm3] 2R_20720669_SNP [dm6]	G	A	4.037e^-7	9.641e^-4	INTRON dpr
3R	11014100	3R_11014100_SNP [dm3] 3R_15188378_SNP [dm6]	A	T	4.071e^-7	9.710e^-4	NON_SYNONYMOUS_CODING Gyc88E	TF binding site mE1_TFBS_cad
2R	13787683	2R_13787683_SNP [dm3] 2R_17900178_SNP [dm6]	G	T	4.090e^-7	9.743e^-4	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17584641	3L_17584641_SNP [dm3] 3L_17591541_SNP [dm6]	G	T	4.156e^-7	9.876e^-4	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl
3L	2531075	3L_2531075_SNP [dm3] 3L_2531075_SNP [dm6]	C	A	4.156e^-7	9.876e^-4	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	20323147	X_20323147_SNP [dm3] X_20452120_SNP [dm6]	C	T	4.172e^-7	9.900e^-4	INTRON CG32506	TF binding site BDTNP1_TFBS_twi
3R	13067631	3R_13067631_SNP [dm3] 3R_17241909_SNP [dm6]	G	A	4.275e^-7	0.001	INTRON beat-IIb
3R	16767928	3R_16767928_SNP [dm3] 3R_20942206_SNP [dm6]	C	T	4.307e^-7	0.001	INTRON CG31191
2R	8414997	2R_8414997_SNP [dm3] 2R_12527492_SNP [dm6]	T	C	4.354e^-7	0.001	INTERGENIC
3R	25642635	3R_25642635_SNP [dm3] 3R_29816913_SNP [dm6]	G	T	4.356e^-7	0.001	UTR_3_PRIME CG7829 UPSTREAM Vps16B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22430444	3L_22430444_SNP [dm3] 3L_22437344_SNP [dm6]	C	A	4.381e^-7	0.001	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26069754	3R_26069754_SNP [dm3] 3R_30244032_SNP [dm6]	G	A	4.391e^-7	0.001	UTR_3_PRIME CG9733 UPSTREAM CG9737
2R	8412930	2R_8412930_SNP [dm3] 2R_12525425_SNP [dm6]	C	T	4.404e^-7	0.001	INTERGENIC
3R	25446523	3R_25446523_SNP [dm3] 3R_29620801_SNP [dm6]	C	G	4.436e^-7	0.001	DOWNSTREAM CG1907 INTERGENIC
3R	26118452	3R_26118452_SNP [dm3] 3R_30292730_SNP [dm6]	A	C	4.440e^-7	0.001	INTRON hdc
3R	26334034	3R_26334034_SNP [dm3] 3R_30508312_SNP [dm6]	C	A	4.440e^-7	0.001	NON_SYNONYMOUS_CODING CG34041 DOWNSTREAM CG15539
3R	26336822	3R_26336822_SNP [dm3] 3R_30511100_SNP [dm6]	A	G	4.440e^-7	0.001	SYNONYMOUS_CODING PH4alphaNE2 DOWNSTREAM CG34041
3L	4527306	3L_4527306_SNP [dm3] 3L_4527306_SNP [dm6]	C	A	4.495e^-7	0.001	INTRON Tie
3L	17371940	3L_17371940_SNP [dm3] 3L_17378840_SNP [dm6]	C	A	4.507e^-7	0.001	START_GAINED Cad74A UTR_5_PRIME Cad74A INTRON Cad74A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	3554964	X_3554964_SNP [dm3] X_3660931_SNP [dm6]	G	A	4.538e^-7	0.001	INTRON AstA-R1
X	20324796	X_20324796_SNP [dm3] X_20453769_SNP [dm6]	A	T	4.602e^-7	0.001	INTRON CG32506
X	20324804	X_20324804_SNP [dm3] X_20453777_SNP [dm6]	C	T	4.602e^-7	0.001	INTRON CG32506
X	20324805	X_20324805_SNP [dm3] X_20453778_SNP [dm6]	A	T	4.602e^-7	0.001	INTRON CG32506
X	20324818	X_20324818_SNP [dm3] X_20453791_SNP [dm6]	T	C	4.602e^-7	0.001	INTRON CG32506
3L	14069868	3L_14069868_SNP [dm3] 3L_14076768_SNP [dm6]	A	T	4.604e^-7	0.001	UPSTREAM btl DOWNSTREAM Pex1 INTRON btl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16149931	3L_16149931_SNP [dm3] 3L_16156831_SNP [dm6]	C	T	4.624e^-7	0.001	INTRON CG5151
2R	16598756	2R_16598756_SNP [dm3] 2R_20711251_SNP [dm6]	G	A	4.636e^-7	0.001	INTRON dpr
2R	8443645	2R_8443645_SNP [dm3] 2R_12556140_SNP [dm6]	A	G	4.655e^-7	0.001	INTRON fra
3L	12569575	3L_12569575_DEL [dm3] 3L_12576475_DEL [dm6]	AA	A	4.716e^-7	0.001	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
3R	27208848	3R_27208848_SNP [dm3] 3R_31383126_SNP [dm6]	G	A	4.722e^-7	0.001	INTRON CG1607
3R	27287694	3R_27287694_SNP [dm3] 3R_31461972_SNP [dm6]	G	A	4.793e^-7	0.001	SPLICE_SITE_REGION CG11334 INTRON CG11334	TF binding site mE1_TFBS_sens
3R	27287711	3R_27287711_SNP [dm3] 3R_31461989_SNP [dm6]	A	T	4.793e^-7	0.001	INTRON CG11334	TF binding site mE1_TFBS_sens
3R	26236312	3R_26236312_SNP [dm3] 3R_30410590_SNP [dm6]	A	C	4.804e^-7	0.001	INTERGENIC
3L	18017319	3L_18017319_SNP [dm3] 3L_18024219_SNP [dm6]	T	C	4.819e^-7	0.001	INTRON Eip75B
2R	1675108	2R_1675108_SNP [dm3] 2R_5787603_SNP [dm6]	T	A	4.837e^-7	0.001	INTERGENIC
3R	15876864	3R_15876864_SNP [dm3] 3R_20051142_SNP [dm6]	C	G	4.866e^-7	0.001	INTRON CG17193
3R	9189946	3R_9189946_SNP [dm3] 3R_13364224_SNP [dm6]	A	T	4.893e^-7	0.001	UPSTREAM Dic1 INTRON poly	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	11806553	2R_11806553_SNP [dm3] 2R_15919048_SNP [dm6]	T	C	4.907e^-7	0.001	INTRON sli	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4728304	2R_4728304_SNP [dm3] 2R_8840799_SNP [dm6]	C	T	4.907e^-7	0.001	INTRON sns	TF binding site mE1_TFBS_cad
3R	26467331	3R_26467331_SNP [dm3] 3R_30641609_SNP [dm6]	G	A	4.941e^-7	0.001	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	18189202	X_18189202_SNP [dm3] X_18295169_SNP [dm6]	G	T	5.026e^-7	0.001	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	14727743	3L_14727743_SNP [dm3] 3L_14734643_SNP [dm6]	A	G	5.109e^-7	0.001	INTRON ome
X	10200712	X_10200712_SNP [dm3] X_10306679_SNP [dm6]	G	A	5.117e^-7	0.001	INTRON alpha-Man-I
3L	17584628	3L_17584628_SNP [dm3] 3L_17591528_SNP [dm6]	A	C	5.138e^-7	0.001	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl
3R	5709231	3R_5709231_SNP [dm3] 3R_9883509_SNP [dm6]	A	G	5.227e^-7	0.001	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl
X	1097264	X_1097264_SNP [dm3] X_1203231_SNP [dm6]	C	A	5.262e^-7	0.001	UPSTREAM CG11381 DOWNSTREAM CG14625 INTERGENIC
X	18996425	X_18996425_SNP [dm3] X_19102392_SNP [dm6]	C	T	5.269e^-7	0.001	INTERGENIC
X	18216933	X_18216933_SNP [dm3] X_18322900_SNP [dm6]	C	T	5.279e^-7	0.001	DOWNSTREAM CG6123 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12353000	3L_12353000_SNP [dm3] 3L_12359900_SNP [dm6]	T	C	5.373e^-7	0.001	INTERGENIC
3L	2482004	3L_2482004_SNP [dm3] 3L_2482004_SNP [dm6]	G	A	5.432e^-7	0.001	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7189128	3L_7189128_SNP [dm3] 3L_7196028_SNP [dm6]	A	C	5.432e^-7	0.001	INTERGENIC
X	18189193	X_18189193_SNP [dm3] X_18295160_SNP [dm6]	T	A	5.442e^-7	0.001	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	1251710	3L_1251710_SNP [dm3] 3L_1251710_SNP [dm6]	T	C	5.449e^-7	0.001	UTR_3_PRIME CG9129 UPSTREAM CG9130 & 1 other	TF binding site mE1_TFBS_cad
2R	19063530	2R_19063530_SNP [dm3] 2R_23176007_SNP [dm6]	G	A	5.480e^-7	0.001	INTRON CG34371
X	20322470	X_20322470_SNP [dm3] X_20451443_SNP [dm6]	C	G	5.527e^-7	0.001	INTRON CG32506
X	14779817	X_14779817_SNP [dm3] X_14885784_SNP [dm6]	C	A	5.530e^-7	0.001	DOWNSTREAM CG9514 INTRON Flo2
3R	7511510	3R_7511510_SNP [dm3] 3R_11685788_SNP [dm6]	A	C	5.533e^-7	0.001	NON_SYNONYMOUS_CODING CG6834	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26270038	3R_26270038_SNP [dm3] 3R_30444316_SNP [dm6]	G	T	5.544e^-7	0.001	UPSTREAM CG15537 INTRON Osi23
3R	26270063	3R_26270063_SNP [dm3] 3R_30444341_SNP [dm6]	C	T	5.544e^-7	0.001	UPSTREAM CG15537 INTRON Osi23
X	18195485	X_18195485_SNP [dm3] X_18301452_SNP [dm6]	G	C	5.567e^-7	0.001	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17371954	3L_17371954_SNP [dm3] 3L_17378854_SNP [dm6]	T	C	5.575e^-7	0.001	UTR_5_PRIME Cad74A INTRON Cad74A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20586267	2R_20586267_SNP [dm3] 2R_24698744_SNP [dm6]	A	T	5.585e^-7	0.001	UTR_3_PRIME Mid1 DOWNSTREAM Mid1
3L	16287367	3L_16287367_SNP [dm3] 3L_16294267_SNP [dm6]	C	T	5.602e^-7	0.001	DOWNSTREAM CG4962 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	20228710	2L_20228710_SNP [dm3] 2L_20228710_SNP [dm6]	C	T	5.639e^-7	0.001	INTERGENIC
3L	11633506	3L_11633506_SNP [dm3] 3L_11640406_SNP [dm6]	A	G	5.644e^-7	0.001	INTRON CG32091
3L	14066471	3L_14066471_SNP [dm3] 3L_14073371_SNP [dm6]	G	A	5.656e^-7	0.001	SYNONYMOUS_CODING Pex1
3L	14066704	3L_14066704_SNP [dm3] 3L_14073604_SNP [dm6]	G	A	5.656e^-7	0.001	NON_SYNONYMOUS_CODING Pex1	TF binding site mE1_TFBS_sens
X	7089702	X_7089702_SNP [dm3] X_7195669_SNP [dm6]	G	A	5.664e^-7	0.001	UPSTREAM CG9650 INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	19740217	X_19740217_SNP [dm3] X_19846184_SNP [dm6]	C	T	5.714e^-7	0.001	UPSTREAM pico INTRON pico
3L	16287780	3L_16287780_SNP [dm3] 3L_16294680_SNP [dm6]	G	T	5.723e^-7	0.001	DOWNSTREAM CG4962 INTERGENIC
2R	16599066	2R_16599066_SNP [dm3] 2R_20711561_SNP [dm6]	G	C	5.754e^-7	0.001	INTRON dpr
2R	16599149	2R_16599149_SNP [dm3] 2R_20711644_SNP [dm6]	G	A	5.754e^-7	0.001	INTRON dpr
3R	27288647	3R_27288647_SNP [dm3] 3R_31462925_SNP [dm6]	G	A	5.823e^-7	0.001	START_GAINED CG11334 UTR_5_PRIME CG11334 UPSTREAM CG11334 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9643663	2R_9643663_SNP [dm3] 2R_13756158_SNP [dm6]	G	C	5.829e^-7	0.001	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_cad
2R	9657469	2R_9657469_SNP [dm3] 2R_13769964_SNP [dm6]	C	T	5.829e^-7	0.001	UTR_5_PRIME Cpr50Ca
3L	8806801	3L_8806801_SNP [dm3] 3L_8813701_SNP [dm6]	A	C	5.829e^-7	0.001	INTERGENIC
3L	15479268	3L_15479268_SNP [dm3] 3L_15486168_SNP [dm6]	A	T	5.894e^-7	0.001	UPSTREAM Ran-like INTERGENIC
3R	5076301	3R_5076301_SNP [dm3] 3R_9250579_SNP [dm6]	T	A	5.899e^-7	0.001	INTRON CG8420
3R	7735314	3R_7735314_SNP [dm3] 3R_11909592_SNP [dm6]	A	G	5.919e^-7	0.001	INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9056977	2R_9056977_SNP [dm3] 2R_13169472_SNP [dm6]	A	G	5.945e^-7	0.001	INTRON Spt-I EXON CR45142	TF binding site mE1_TFBS_jumu mE1_TFBS_sens
2R	9056996	2R_9056996_SNP [dm3] 2R_13169491_SNP [dm6]	T	G	5.945e^-7	0.001	INTRON Spt-I EXON CR45142	TF binding site mE1_TFBS_jumu mE1_TFBS_sens
2R	9056998	2R_9056998_SNP [dm3] 2R_13169493_SNP [dm6]	C	T	5.945e^-7	0.001	INTRON Spt-I EXON CR45142	TF binding site mE1_TFBS_jumu mE1_TFBS_sens
2R	9057003	2R_9057003_SNP [dm3] 2R_13169498_SNP [dm6]	T	A	5.945e^-7	0.001	INTRON Spt-I EXON CR45142	TF binding site mE1_TFBS_jumu mE1_TFBS_sens
2R	9057007	2R_9057007_SNP [dm3] 2R_13169502_SNP [dm6]	T	C	5.945e^-7	0.001	SPLICE_SITE_REGION Spt-I INTRON Spt-I EXON CR45142	TF binding site mE1_TFBS_jumu mE1_TFBS_sens
3L	9672614	3L_9672614_SNP [dm3] 3L_9679514_SNP [dm6]	C	T	5.987e^-7	0.001	UPSTREAM fry INTRON CG16717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2205479	3L_2205479_SNP [dm3] 3L_2205479_SNP [dm6]	T	C	6.007e^-7	0.001	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	2205547	3L_2205547_SNP [dm3] 3L_2205547_SNP [dm6]	T	C	6.007e^-7	0.001	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	2205570	3L_2205570_SNP [dm3] 3L_2205570_SNP [dm6]	T	C	6.007e^-7	0.001	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	8277399	2R_8277399_SNP [dm3] 2R_12389894_SNP [dm6]	A	G	6.007e^-7	0.001	UTR_3_PRIME Cpr49Ac	TF binding site mE1_TFBS_cad
3L	13816079	3L_13816079_SNP [dm3] 3L_13822979_SNP [dm6]	T	C	6.088e^-7	0.001	INTERGENIC
3L	13816080	3L_13816080_SNP [dm3] 3L_13822980_SNP [dm6]	G	A	6.088e^-7	0.001	INTERGENIC
X	19351187	X_19351187_SNP [dm3] X_19457154_SNP [dm6]	G	A	6.112e^-7	0.001	INTRON kek5
X	19740492	X_19740492_SNP [dm3] X_19846459_SNP [dm6]	C	T	6.132e^-7	0.001	UPSTREAM pico INTRON pico	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	7536117	2L_7536117_SNP [dm3] 2L_7536117_SNP [dm6]	A	T	6.139e^-7	0.001	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26236385	3R_26236385_DEL [dm3] 3R_30410663_DEL [dm6]	GC	A	6.144e^-7	0.001	INTERGENIC
2R	16294753	2R_16294753_SNP [dm3] 2R_20407248_SNP [dm6]	C	A	6.230e^-7	0.001	INTERGENIC
3R	5279417	3R_5279417_INS [dm3] 3R_9453695_INS [dm6]	A	AACAG	6.303e^-7	0.001	UTR_3_PRIME ps
2R	4130467	2R_4130467_SNP [dm3] 2R_8242962_SNP [dm6]	A	G	6.327e^-7	0.001	UPSTREAM CR44276 EXON CR44445	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10200714	X_10200714_SNP [dm3] X_10306681_SNP [dm6]	T	G	6.393e^-7	0.001	INTRON alpha-Man-I
2R	10034898	2R_10034898_SNP [dm3] 2R_14147393_SNP [dm6]	G	A	6.410e^-7	0.001	DOWNSTREAM Rcd1 INTERGENIC	TF binding site mE1_TFBS_cad
3R	4294856	3R_4294856_SNP [dm3] 3R_8469134_SNP [dm6]	A	G	6.445e^-7	0.001	INTRON CG45263	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	7147977	3R_7147977_SNP [dm3] 3R_11322255_SNP [dm6]	G	A	6.452e^-7	0.001	INTERGENIC
X	19740192	X_19740192_SNP [dm3] X_19846159_SNP [dm6]	A	T	6.452e^-7	0.001	UPSTREAM pico INTRON pico
3L	23079740	3L_23079740_SNP [dm3] 3L_23086640_SNP [dm6]	G	C	6.508e^-7	0.001	INTERGENIC	transposable element FlyBase
X	20319149	X_20319149_SNP [dm3] X_20448122_SNP [dm6]	T	G	6.571e^-7	0.001	INTERGENIC
3R	26071350	3R_26071350_SNP [dm3] 3R_30245628_SNP [dm6]	T	G	6.651e^-7	0.001	SYNONYMOUS_CODING CG9733
3L	13246369	3L_13246369_SNP [dm3] 3L_13253269_SNP [dm6]	A	T	6.670e^-7	0.001	INTRON caps	TF binding site mE1_TFBS_inv
3R	25204934	3R_25204934_SNP [dm3] 3R_29379212_SNP [dm6]	C	T	6.693e^-7	0.001	INTRON Ptp99A
X	10203656	X_10203656_SNP [dm3] X_10309623_SNP [dm6]	A	G	6.737e^-7	0.001	UPSTREAM alpha-Man-I INTRON alpha-Man-I	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17875658	X_17875658_SNP [dm3] X_17981625_SNP [dm6]	T	G	6.748e^-7	0.001	INTRON Sh
X	8803303	X_8803303_SNP [dm3] X_8909270_SNP [dm6]	A	T	6.851e^-7	0.001	INTRON rdgA
X	10202409	X_10202409_SNP [dm3] X_10308376_SNP [dm6]	C	T	6.874e^-7	0.001	SYNONYMOUS_CODING alpha-Man-I INTRON alpha-Man-I	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_run
3R	26210874	3R_26210874_SNP [dm3] 3R_30385152_SNP [dm6]	T	C	7.029e^-7	0.001	DOWNSTREAM Fer1HCH INTERGENIC
2R	16575946	2R_16575946_SNP [dm3] 2R_20688441_SNP [dm6]	T	C	7.164e^-7	0.001	INTERGENIC
3R	10492137	3R_10492137_SNP [dm3] 3R_14666415_SNP [dm6]	T	G	7.302e^-7	0.002	NON_SYNONYMOUS_CODING Meltrin	TF binding site mE1_TFBS_chinmo
X	14779407	X_14779407_SNP [dm3] X_14885374_SNP [dm6]	A	G	7.372e^-7	0.002	DOWNSTREAM CG9514 INTRON Flo2
3L	7072929	3L_7072929_SNP [dm3] 3L_7079829_SNP [dm6]	G	T	7.398e^-7	0.002	INTERGENIC
2R	19530852	2R_19530852_SNP [dm3] 2R_23643329_SNP [dm6]	G	A	7.418e^-7	0.002	INTRON retn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	2205487	3L_2205487_SNP [dm3] 3L_2205487_SNP [dm6]	G	A	7.498e^-7	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_hb
X	18192793	X_18192793_SNP [dm3] X_18298760_SNP [dm6]	A	G	7.522e^-7	0.002	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	8440174	2R_8440174_SNP [dm3] 2R_12552669_SNP [dm6]	T	C	7.554e^-7	0.002	INTRON fra
2R	9178834	2R_9178834_SNP [dm3] 2R_13291329_SNP [dm6]	T	C	7.554e^-7	0.002	INTRON Dh31-R	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3123493	3L_3123493_DEL [dm3] 3L_3123493_DEL [dm6]	GA	G	7.554e^-7	0.002	UPSTREAM prominin-like INTRON prominin-like
3R	4283522	3R_4283522_SNP [dm3] 3R_8457800_SNP [dm6]	G	A	7.554e^-7	0.002	INTRON CG45263
3L	10490033	3L_10490033_SNP [dm3] 3L_10496933_SNP [dm6]	C	T	7.599e^-7	0.002	INTRON A2bp1
X	4977099	X_4977099_SNP [dm3] X_5083066_SNP [dm6]	C	A	7.639e^-7	0.002	UPSTREAM CG32767 INTRON CG32767	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	9658119	2R_9658119_SNP [dm3] 2R_13770614_SNP [dm6]	A	G	7.728e^-7	0.002	INTRON Cpr50Ca	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	3501570	3R_3501570_SNP [dm3] 3R_7675848_SNP [dm6]	G	A	7.728e^-7	0.002	INTRON Nlg1
3R	22148351	3R_22148351_INS [dm3] 3R_26322629_INS [dm6]	C	CACC	7.733e^-7	0.002	INTRON CG33970	TF binding site mE1_TFBS_inv
2R	13138101	2R_13138101_SNP [dm3] 2R_17250596_SNP [dm6]	G	C	7.792e^-7	0.002	INTRON mbl
2L	10117877	2L_10117877_SNP [dm3] 2L_10117877_SNP [dm6]	G	A	7.857e^-7	0.002	INTRON CG44153 & 1 other
X	4407964	X_4407964_SNP [dm3] X_4513931_SNP [dm6]	G	C	7.944e^-7	0.002	INTRON CR32773
3L	7316646	3L_7316646_SNP [dm3] 3L_7323546_SNP [dm6]	T	A	7.957e^-7	0.002	UPSTREAM Rint1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
2R	15974327	2R_15974327_SNP [dm3] 2R_20086822_SNP [dm6]	G	A	7.977e^-7	0.002	DOWNSTREAM CR44632 INTERGENIC
3R	6042322	3R_6042322_SNP [dm3] 3R_10216600_SNP [dm6]	G	A	7.977e^-7	0.002	INTRON Syn
2R	20586215	2R_20586215_SNP [dm3] 2R_24698692_SNP [dm6]	C	T	8.058e^-7	0.002	UTR_3_PRIME Mid1 DOWNSTREAM Mid1
3L	10095342	3L_10095342_SNP [dm3] 3L_10102242_SNP [dm6]	A	C	8.062e^-7	0.002	INTRON dpr6
3L	10095350	3L_10095350_SNP [dm3] 3L_10102250_SNP [dm6]	C	T	8.062e^-7	0.002	INTRON dpr6
X	18996392	X_18996392_INS [dm3] X_19102359_INS [dm6]	A	ATACACCCACA...	8.148e^-7	0.002	INTERGENIC
2R	3465546	2R_3465546_SNP [dm3] 2R_7578041_SNP [dm6]	C	T	8.148e^-7	0.002	SYNONYMOUS_CODING Vps13 DOWNSTREAM CR45130
X	22047357	X_22047357_SNP [dm3] X_22645521_SNP [dm6]	A	G	8.193e^-7	0.002	INTERGENIC
X	22047359	X_22047359_SNP [dm3] X_22645523_SNP [dm6]	T	A	8.193e^-7	0.002	INTERGENIC
2L	7243143	2L_7243143_SNP [dm3] 2L_7243143_SNP [dm6]	T	A	8.272e^-7	0.002	INTRON Ndae1	TF binding site mE1_TFBS_Trl
3R	7391728	3R_7391728_SNP [dm3] 3R_11566006_SNP [dm6]	G	A	8.302e^-7	0.002	INTRON fabp & 1 other	TF binding site mE1_TFBS_Trl
X	18995728	X_18995728_SNP [dm3] X_19101695_SNP [dm6]	T	C	8.407e^-7	0.002	INTERGENIC
2R	12861721	2R_12861721_SNP [dm3] 2R_16974216_SNP [dm6]	G	A	8.458e^-7	0.002	INTRON Cbp53E
3L	10873597	3L_10873597_SNP [dm3] 3L_10880497_SNP [dm6]	A	G	8.581e^-7	0.002	DOWNSTREAM CG6409 & 1 other INTERGENIC
2R	8313943	2R_8313943_SNP [dm3] 2R_12426438_SNP [dm6]	A	T	8.715e^-7	0.002	DOWNSTREAM CG8520 & 1 other INTRON CG8525	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23723567	3R_23723567_SNP [dm3] 3R_27897845_SNP [dm6]	G	A	8.743e^-7	0.002	INTRON CG34353
3L	22968730	3L_22968730_SNP [dm3] 3L_22975630_SNP [dm6]	A	G	8.811e^-7	0.002	INTERGENIC
3L	22968731	3L_22968731_SNP [dm3] 3L_22975631_SNP [dm6]	C	T	8.811e^-7	0.002	INTERGENIC
2L	13690446	2L_13690446_SNP [dm3] 2L_13690446_SNP [dm6]	T	G	8.918e^-7	0.002	INTRON CG31814
3R	20805835	3R_20805835_SNP [dm3] 3R_24980113_SNP [dm6]	A	G	8.922e^-7	0.002	INTERGENIC
3L	11003234	3L_11003234_SNP [dm3] 3L_11010134_SNP [dm6]	C	G	9.070e^-7	0.002	UPSTREAM klu INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	26212868	3R_26212868_SNP [dm3] 3R_30387146_SNP [dm6]	A	G	9.154e^-7	0.002	UTR_5_PRIME Fer1HCH UPSTREAM Fer2LCH INTRON Fer1HCH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_Trl
3R	9427577	3R_9427577_SNP [dm3] 3R_13601855_SNP [dm6]	C	T	9.204e^-7	0.002	INTERGENIC
3R	26070389	3R_26070389_SNP [dm3] 3R_30244667_SNP [dm6]	G	A	9.228e^-7	0.002	SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26070407	3R_26070407_SNP [dm3] 3R_30244685_SNP [dm6]	C	A	9.228e^-7	0.002	SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26070415	3R_26070415_SNP [dm3] 3R_30244693_SNP [dm6]	C	A	9.228e^-7	0.002	NON_SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26070678	3R_26070678_SNP [dm3] 3R_30244956_SNP [dm6]	T	A	9.228e^-7	0.002	INTRON CG9733
3R	26071939	3R_26071939_SNP [dm3] 3R_30246217_SNP [dm6]	G	A	9.228e^-7	0.002	INTRON CG9733
3R	26071941	3R_26071941_SNP [dm3] 3R_30246219_SNP [dm6]	T	C	9.228e^-7	0.002	INTRON CG9733
3R	26071956	3R_26071956_SNP [dm3] 3R_30246234_SNP [dm6]	C	T	9.228e^-7	0.002	INTRON CG9733
X	18188988	X_18188988_SNP [dm3] X_18294955_SNP [dm6]	T	A	9.228e^-7	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	16284131	3L_16284131_SNP [dm3] 3L_16291031_SNP [dm6]	T	G	9.235e^-7	0.002	UPSTREAM CG13045 INTERGENIC
3R	11036550	3R_11036550_SNP [dm3] 3R_15210828_SNP [dm6]	C	T	9.235e^-7	0.002	SYNONYMOUS_CODING CG4203 DOWNSTREAM CG6654	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	8804100	X_8804100_INS [dm3] X_8910067_INS [dm6]	A	AC	9.285e^-7	0.002	INTRON rdgA
3L	19354139	3L_19354139_SNP [dm3] 3L_19361039_SNP [dm6]	C	T	9.286e^-7	0.002	INTRON CG32206
3L	5882279	3L_5882279_SNP [dm3] 3L_5889179_SNP [dm6]	T	A	9.286e^-7	0.002	INTERGENIC
3L	9160353	3L_9160353_SNP [dm3] 3L_9167253_SNP [dm6]	A	T	9.313e^-7	0.002	INTRON Rdl
3R	18263479	3R_18263479_SNP [dm3] 3R_22437757_SNP [dm6]	T	G	9.327e^-7	0.002	INTERGENIC
3L	6596296	3L_6596296_SNP [dm3] 3L_6603196_SNP [dm6]	C	T	9.336e^-7	0.002	UTR_5_PRIME ndl UPSTREAM CG8368
2R	15873538	2R_15873538_INS [dm3] 2R_19986033_INS [dm6]	A	AT	9.344e^-7	0.002	INTERGENIC
2R	8547424	2R_8547424_SNP [dm3] 2R_12659919_SNP [dm6]	C	T	9.354e^-7	0.002	UTR_3_PRIME nemy DOWNSTREAM CG8646
3R	10286588	3R_10286588_SNP [dm3] 3R_14460866_SNP [dm6]	A	T	9.449e^-7	0.002	INTRON cv-c
3L	19001722	3L_19001722_SNP [dm3] 3L_19008622_SNP [dm6]	A	C	9.451e^-7	0.002	INTRON nkd
3R	27304335	3R_27304335_SNP [dm3] 3R_31478613_SNP [dm6]	T	G	9.534e^-7	0.002	INTERGENIC
3R	22076556	3R_22076556_SNP [dm3] 3R_26250834_SNP [dm6]	C	T	9.567e^-7	0.002	INTRON CR42745
3L	11451048	3L_11451048_SNP [dm3] 3L_11457948_SNP [dm6]	C	A	9.571e^-7	0.002	SYNONYMOUS_CODING CG12289 UPSTREAM CG7551	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	13783005	2R_13783005_SNP [dm3] 2R_17895500_SNP [dm6]	G	C	9.677e^-7	0.002	NON_SYNONYMOUS_CODING CG14491 INTRON Elk	TF binding site BDTNP1_TFBS_twi
3R	20452608	3R_20452608_SNP [dm3] 3R_24626886_SNP [dm6]	T	G	9.731e^-7	0.002	DOWNSTREAM Wsck INTRON atl
2R	15974322	2R_15974322_SNP [dm3] 2R_20086817_SNP [dm6]	G	A	9.737e^-7	0.002	DOWNSTREAM CR44632 INTERGENIC
2R	17526546	2R_17526546_SNP [dm3] 2R_21639041_SNP [dm6]	G	A	9.778e^-7	0.002	DOWNSTREAM CG10321 INTERGENIC
2R	17526548	2R_17526548_INS [dm3] 2R_21639043_INS [dm6]	T	TTCTC	9.778e^-7	0.002	DOWNSTREAM CG10321 INTERGENIC
2R	3770988	2R_3770988_SNP [dm3] 2R_7883483_SNP [dm6]	T	C	1.004e^-6	0.002	INTRON Dgk
X	18187315	X_18187315_SNP [dm3] X_18293282_SNP [dm6]	G	A	1.014e^-6	0.002	DOWNSTREAM CR15061 INTERGENIC
X	18187334	X_18187334_SNP [dm3] X_18293301_SNP [dm6]	T	C	1.014e^-6	0.002	DOWNSTREAM CR15061 INTERGENIC
3R	6069486	3R_6069486_SNP [dm3] 3R_10243764_SNP [dm6]	T	G	1.015e^-6	0.002	NON_SYNONYMOUS_CODING CG42795
2R	6168257	2R_6168257_SNP [dm3] 2R_10280752_SNP [dm6]	A	G	1.032e^-6	0.002	NON_SYNONYMOUS_CODING CAP UPSTREAM CAP INTRON CAP	TF binding site mE1_TFBS_chinmo
2R	6168840	2R_6168840_SNP [dm3] 2R_10281335_SNP [dm6]	A	G	1.032e^-6	0.002	SYNONYMOUS_CODING CAP UPSTREAM CAP INTRON CAP	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4737824	X_4737824_SNP [dm3] X_4843791_SNP [dm6]	G	A	1.032e^-6	0.002	INTRON CG42594
3R	26847627	3R_26847627_SNP [dm3] 3R_31021905_SNP [dm6]	T	C	1.051e^-6	0.002	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	17104259	3R_17104259_SNP [dm3] 3R_21278537_SNP [dm6]	G	T	1.072e^-6	0.002	UTR_3_PRIME SIFaR
3L	14071822	3L_14071822_SNP [dm3] 3L_14078722_SNP [dm6]	T	A	1.087e^-6	0.002	INTRON btl	regulatory region REDfly_CRMs
3R	11691124	3R_11691124_SNP [dm3] 3R_15865402_SNP [dm6]	C	T	1.087e^-6	0.002	INTRON CG31183
2R	16573669	2R_16573669_SNP [dm3] 2R_20686164_SNP [dm6]	A	G	1.099e^-6	0.002	SYNONYMOUS_CODING Gr57a
3L	4882248	3L_4882248_SNP [dm3] 3L_4882248_SNP [dm6]	C	A	1.113e^-6	0.002	INTRON CG17150
3L	14070701	3L_14070701_SNP [dm3] 3L_14077601_SNP [dm6]	A	T	1.116e^-6	0.002	INTRON btl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	18263297	3R_18263297_SNP [dm3] 3R_22437575_SNP [dm6]	T	G	1.117e^-6	0.002	INTERGENIC
3R	14930095	3R_14930095_SNP [dm3] 3R_19104373_SNP [dm6]	G	C	1.121e^-6	0.002	INTRON CG6040
X	384927	X_384927_SNP [dm3] X_490894_SNP [dm6]	T	G	1.123e^-6	0.002	UTR_3_PRIME CG17896 DOWNSTREAM CG3156
3L	15725363	3L_15725363_SNP [dm3] 3L_15732263_SNP [dm6]	G	T	1.123e^-6	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2264922	3R_2264922_SNP [dm3] 3R_6439200_SNP [dm6]	C	T	1.127e^-6	0.002	INTRON gpp
3R	2273966	3R_2273966_SNP [dm3] 3R_6448244_SNP [dm6]	A	T	1.127e^-6	0.002	UTR_3_PRIME gpp DOWNSTREAM gpp	TF binding site mE1_TFBS_zfh1
3R	2282737	3R_2282737_SNP [dm3] 3R_6457015_SNP [dm6]	G	T	1.127e^-6	0.002	UPSTREAM Zif & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	2288776	3R_2288776_SNP [dm3] 3R_6463054_SNP [dm6]	C	A	1.127e^-6	0.002	INTERGENIC
3L	17336639	3L_17336639_SNP [dm3] 3L_17343539_SNP [dm6]	G	A	1.128e^-6	0.002	SYNONYMOUS_CODING brv2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20323094	X_20323094_SNP [dm3] X_20452067_SNP [dm6]	G	T	1.130e^-6	0.002	INTRON CG32506	TF binding site BDTNP1_TFBS_twi
3R	3936274	3R_3936274_SNP [dm3] 3R_8110552_SNP [dm6]	C	T	1.134e^-6	0.002	INTRON puc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	5881084	3L_5881084_SNP [dm3] 3L_5887984_SNP [dm6]	G	C	1.135e^-6	0.002	INTERGENIC
3L	5882278	3L_5882278_SNP [dm3] 3L_5889178_SNP [dm6]	A	T	1.135e^-6	0.002	INTERGENIC
2R	16612969	2R_16612969_SNP [dm3] 2R_20725464_SNP [dm6]	A	T	1.144e^-6	0.002	INTRON dpr
X	18196837	X_18196837_SNP [dm3] X_18302804_SNP [dm6]	G	A	1.144e^-6	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	6797897	3L_6797897_SNP [dm3] 3L_6804797_SNP [dm6]	T	C	1.149e^-6	0.002	INTERGENIC	regulatory region REDfly_CRMs
3L	5844858	3L_5844858_SNP [dm3] 3L_5851758_SNP [dm6]	G	A	1.155e^-6	0.002	INTERGENIC
3R	12098022	3R_12098022_SNP [dm3] 3R_16272300_SNP [dm6]	T	A	1.158e^-6	0.002	NON_SYNONYMOUS_CODING Mat89Ba UPSTREAM gish	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	20315940	3R_20315940_SNP [dm3] 3R_24490218_SNP [dm6]	G	C	1.160e^-6	0.002	INTRON nAChRalpha2
3L	12562640	3L_12562640_SNP [dm3] 3L_12569540_SNP [dm6]	A	T	1.169e^-6	0.002	INTRON sowah	TF binding site BDTNP1_TFBS_twi
3L	7189655	3L_7189655_SNP [dm3] 3L_7196555_SNP [dm6]	C	G	1.169e^-6	0.002	INTERGENIC
X	18189156	X_18189156_SNP [dm3] X_18295123_SNP [dm6]	A	T	1.169e^-6	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3R	14054537	3R_14054537_SNP [dm3] 3R_18228815_SNP [dm6]	T	C	1.169e^-6	0.002	DOWNSTREAM Mdh2 INTERGENIC
2R	14166716	2R_14166716_INS [dm3] 2R_18279211_INS [dm6]	T	AG	1.171e^-6	0.002	UTR_3_PRIME sbb DOWNSTREAM pen-2

By genomic position
Variant impact
Gene name

Microbiota_OTU021 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results