DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.427e^-13)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	6.664e-07

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	17.7774	0.0001

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

9820 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	3797711	X_3797711_SNP [dm3] X_3903678_SNP [dm6]	A	G	1.859e^-15	4.563e^-10	INTRON CG42541
2R	9020398	2R_9020398_SNP [dm3] 2R_13132893_SNP [dm6]	A	T	2.403e^-15	4.563e^-10	UPSTREAM Cap-G & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2L	11613676	2L_11613676_SNP [dm3] 2L_11613676_SNP [dm6]	G	A	2.660e^-15	4.563e^-10	INTRON kek2
2R	9017323	2R_9017323_SNP [dm3] 2R_13129818_SNP [dm6]	T	G	2.698e^-15	4.563e^-10	SYNONYMOUS_CODING CG13326 UPSTREAM CG3955	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9021319	2R_9021319_SNP [dm3] 2R_13133814_SNP [dm6]	T	C	2.698e^-15	4.563e^-10	SPLICE_SITE_REGION Cap-G INTRON Cap-G	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	9022146	2R_9022146_SNP [dm3] 2R_13134641_SNP [dm6]	G	T	2.698e^-15	4.563e^-10	SYNONYMOUS_CODING Cap-G	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9022763	2R_9022763_SNP [dm3] 2R_13135258_SNP [dm6]	G	T	2.698e^-15	4.563e^-10	SYNONYMOUS_CODING Cap-G	TF binding site mE1_TFBS_sens
2R	9022766	2R_9022766_SNP [dm3] 2R_13135261_SNP [dm6]	G	A	2.698e^-15	4.563e^-10	SYNONYMOUS_CODING Cap-G	TF binding site mE1_TFBS_sens
2R	9024003	2R_9024003_SNP [dm3] 2R_13136498_SNP [dm6]	A	G	2.698e^-15	4.563e^-10	NON_SYNONYMOUS_CODING Cap-G	TF binding site mE1_TFBS_sens
2R	9031447	2R_9031447_SNP [dm3] 2R_13143942_SNP [dm6]	C	T	2.698e^-15	4.563e^-10	SYNONYMOUS_CODING Ack-like	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23762626	3R_23762626_SNP [dm3] 3R_27936904_SNP [dm6]	G	T	2.698e^-15	4.563e^-10	NON_SYNONYMOUS_CODING Mes-4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	19131644	2R_19131644_SNP [dm3] 2R_23244121_SNP [dm6]	T	A	4.357e^-15	6.023e^-10	UTR_3_PRIME yip3
2L	11613641	2L_11613641_SNP [dm3] 2L_11613641_SNP [dm6]	T	C	4.465e^-15	6.023e^-10	INTRON kek2
2R	9020410	2R_9020410_SNP [dm3] 2R_13132905_SNP [dm6]	C	A	4.532e^-15	6.023e^-10	UPSTREAM Cap-G & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2R	8919861	2R_8919861_SNP [dm3] 2R_13032356_SNP [dm6]	G	T	7.643e^-15	9.480e^-10	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	9020140	2R_9020140_SNP [dm3] 2R_13132635_SNP [dm6]	G	A	8.710e^-15	1.013e^-9	UPSTREAM Cap-G & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	15014770	2R_15014770_SNP [dm3] 2R_19127265_SNP [dm6]	G	T	2.279e^-14	2.494e^-9	UPSTREAM CG15117 INTRON CG15117
3R	12649115	3R_12649115_SNP [dm3] 3R_16823393_SNP [dm6]	T	G	7.000e^-14	6.716e^-9	INTRON abd-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19753918	3R_19753918_SNP [dm3] 3R_23928196_SNP [dm6]	T	G	7.219e^-14	6.716e^-9	SYNONYMOUS_CODING CG43998 UTR_3_PRIME CG43999 UPSTREAM CG13601	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	19754017	3R_19754017_SNP [dm3] 3R_23928295_SNP [dm6]	A	G	7.219e^-14	6.716e^-9	SYNONYMOUS_CODING CG43998 UTR_3_PRIME CG43999 UPSTREAM CG13601 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	15121377	X_15121377_SNP [dm3] X_15227344_SNP [dm6]	T	C	1.288e^-13	1.141e^-8	INTERGENIC
2R	6149832	2R_6149832_SNP [dm3] 2R_10262327_SNP [dm6]	A	T	1.399e^-13	1.183e^-8	DOWNSTREAM CR30009 EXON CR30009
3L	7857070	3L_7857070_SNP [dm3] 3L_7863970_SNP [dm6]	C	A	4.263e^-13	3.305e^-8	INTRON Pdp1
3L	7857088	3L_7857088_SNP [dm3] 3L_7863988_SNP [dm6]	T	G	4.263e^-13	3.305e^-8	INTRON Pdp1
3L	7854899	3L_7854899_SNP [dm3] 3L_7861799_SNP [dm6]	G	A	6.733e^-13	5.010e^-8	INTRON Pdp1
3L	11726139	3L_11726139_SNP [dm3] 3L_11733039_SNP [dm6]	C	T	9.599e^-13	6.856e^-8	SYNONYMOUS_CODING CG32087 DOWNSTREAM CG32088 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7857139	3L_7857139_SNP [dm3] 3L_7864039_SNP [dm6]	C	T	9.950e^-13	6.856e^-8	INTRON Pdp1
3L	11450637	3L_11450637_SNP [dm3] 3L_11457537_SNP [dm6]	G	A	1.182e^-12	7.853e^-8	SYNONYMOUS_CODING CG12289 UPSTREAM CG7551	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	17580343	2L_17580343_SNP [dm3] 2L_17580343_SNP [dm6]	A	C	1.344e^-12	8.507e^-8	DOWNSTREAM CR45698 INTERGENIC
2L	16108031	2L_16108031_SNP [dm3] 2L_16108031_SNP [dm6]	G	A	1.412e^-12	8.507e^-8	INTERGENIC
2R	2808069	2R_2808069_SNP [dm3] 2R_6920564_SNP [dm6]	G	A	1.463e^-12	8.507e^-8	UTR_3_PRIME CG30158	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	2808073	2R_2808073_SNP [dm3] 2R_6920568_SNP [dm6]	C	A	1.463e^-12	8.507e^-8	UTR_3_PRIME CG30158	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11344562	2L_11344562_SNP [dm3] 2L_11344562_SNP [dm6]	C	A	1.719e^-12	9.693e^-8	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	18562319	2L_18562319_SNP [dm3] 2L_18562319_SNP [dm6]	A	C	1.810e^-12	9.907e^-8	INTRON Pde11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11347162	2L_11347162_SNP [dm3] 2L_11347162_SNP [dm6]	A	G	1.976e^-12	1.050e^-7	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1044920	2L_1044920_SNP [dm3] 2L_1044920_SNP [dm6]	T	C	3.843e^-12	1.986e^-7	INTRON IA-2
2L	17550727	2L_17550727_SNP [dm3] 2L_17550727_SNP [dm6]	T	A	4.649e^-12	2.338e^-7	INTERGENIC
2R	1358483	2R_1358483_SNP [dm3] 2R_5470978_SNP [dm6]	T	A	5.481e^-12	2.585e^-7	INTRON CG30440	TF binding site mE1_TFBS_cad transposable element FlyBase
2R	20527337	2R_20527337_SNP [dm3] 2R_24639814_SNP [dm6]	C	G	5.558e^-12	2.585e^-7	NON_SYNONYMOUS_CODING CG3640 DOWNSTREAM CG4781	TF binding site mE1_TFBS_chinmo
2R	20527338	2R_20527338_SNP [dm3] 2R_24639815_SNP [dm6]	G	T	5.558e^-12	2.585e^-7	SYNONYMOUS_CODING CG3640 DOWNSTREAM CG4781	TF binding site mE1_TFBS_chinmo
2R	196551	2R_196551_SNP [dm3] 2R_4309046_SNP [dm6]	A	C	5.959e^-12	2.704e^-7	INTERGENIC
2L	20465043	2L_20465043_SNP [dm3] 2L_20465043_SNP [dm6]	G	C	6.137e^-12	2.718e^-7	EXON CR44980	TF binding site mE1_TFBS_bab1
2R	6149282	2R_6149282_SNP [dm3] 2R_10261777_SNP [dm6]	A	T	8.074e^-12	3.460e^-7	DOWNSTREAM CG12911 & 1 other EXON CR30009
2R	20480330	2R_20480330_SNP [dm3] 2R_24592807_SNP [dm6]	T	A	8.208e^-12	3.460e^-7	DOWNSTREAM pio INTRON pio
2R	6149975	2R_6149975_SNP [dm3] 2R_10262470_SNP [dm6]	A	G	8.708e^-12	3.460e^-7	DOWNSTREAM CR30009 EXON CR30009
2R	181046	2R_181046_SNP [dm3] 2R_4293541_SNP [dm6]	G	A	8.978e^-12	3.460e^-7	INTERGENIC
2R	181000	2R_181000_SNP [dm3] 2R_4293495_SNP [dm6]	C	T	9.005e^-12	3.460e^-7	INTERGENIC
2L	12612480	2L_12612480_SNP [dm3] 2L_12612480_SNP [dm6]	A	T	9.298e^-12	3.460e^-7	INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	20361128	2L_20361128_SNP [dm3] 2L_20361128_SNP [dm6]	A	G	9.298e^-12	3.460e^-7	UTR_3_PRIME RtGEF INTRON RtGEF	TF binding site mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	20361155	2L_20361155_SNP [dm3] 2L_20361155_SNP [dm6]	C	A	9.298e^-12	3.460e^-7	UTR_3_PRIME RtGEF INTRON RtGEF	TF binding site mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	13736384	3L_13736384_SNP [dm3] 3L_13743284_SNP [dm6]	C	G	1.036e^-11	3.745e^-7	INTRON bru-3
2R	10608986	2R_10608986_SNP [dm3] 2R_14721481_SNP [dm6]	T	A	1.064e^-11	3.745e^-7	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13530057	3L_13530057_SNP [dm3] 3L_13536957_SNP [dm6]	T	C	1.067e^-11	3.745e^-7	UTR_3_PRIME bru-3 DOWNSTREAM bru-3
2L	10931132	2L_10931132_SNP [dm3] 2L_10931132_SNP [dm6]	A	C	1.359e^-11	4.683e^-7	INTRON dpr2
3L	2896529	3L_2896529_SNP [dm3] 3L_2896529_SNP [dm6]	A	C	1.947e^-11	6.475e^-7	UPSTREAM Shab INTRON Shab	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	14859824	2L_14859824_SNP [dm3] 2L_14859824_SNP [dm6]	A	C	2.009e^-11	6.475e^-7	INTERGENIC
2R	17723570	2R_17723570_SNP [dm3] 2R_21836065_SNP [dm6]	C	T	2.018e^-11	6.475e^-7	INTRON CG4377
2R	17723584	2R_17723584_SNP [dm3] 2R_21836079_SNP [dm6]	A	G	2.018e^-11	6.475e^-7	INTRON CG4377
3L	13730404	3L_13730404_SNP [dm3] 3L_13737304_SNP [dm6]	C	G	2.199e^-11	6.934e^-7	INTRON bru-3
X	19681565	X_19681565_SNP [dm3] X_19787532_SNP [dm6]	T	C	2.512e^-11	7.790e^-7	INTRON CR44885	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	19362512	X_19362512_SNP [dm3] X_19468479_SNP [dm6]	G	A	2.650e^-11	8.084e^-7	SYNONYMOUS_CODING kek5	TF binding site mE1_TFBS_chinmo
2R	20514412	2R_20514412_SNP [dm3] 2R_24626889_SNP [dm6]	A	C	2.695e^-11	8.088e^-7	INTRON CG13594	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	19483287	2L_19483287_SNP [dm3] 2L_19483287_SNP [dm6]	C	A	4.039e^-11	1.193e^-6	NON_SYNONYMOUS_CODING CG10195	TF binding site mE1_TFBS_cad
2L	16106492	2L_16106492_SNP [dm3] 2L_16106492_SNP [dm6]	A	T	4.232e^-11	1.230e^-6	INTERGENIC
X	3347122	X_3347122_SNP [dm3] X_3453089_SNP [dm6]	C	T	4.304e^-11	1.232e^-6	INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	8099840	X_8099840_SNP [dm3] X_8205807_SNP [dm6]	T	A	5.585e^-11	1.574e^-6	INTRON sdt
2L	19650930	2L_19650930_SNP [dm3] 2L_19650930_SNP [dm6]	T	A	6.465e^-11	1.795e^-6	INTRON Lar
3R	26567182	3R_26567182_DEL [dm3] 3R_30741460_DEL [dm6]	AC	A	7.354e^-11	2.012e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	8287164	X_8287164_SNP [dm3] X_8393131_SNP [dm6]	A	T	7.633e^-11	2.058e^-6	INTERGENIC
2R	13821878	2R_13821878_SNP [dm3] 2R_17934373_SNP [dm6]	G	A	1.000e^-10	2.568e^-6	INTERGENIC
2R	13850050	2R_13850050_SNP [dm3] 2R_17962545_SNP [dm6]	A	T	1.000e^-10	2.568e^-6	INTERGENIC
2L	19506716	2L_19506716_SNP [dm3] 2L_19506716_SNP [dm6]	G	A	1.025e^-10	2.568e^-6	INTRON CG10188	transposable element FlyBase
3R	13911434	3R_13911434_SNP [dm3] 3R_18085712_SNP [dm6]	C	T	1.027e^-10	2.568e^-6	INTERGENIC
2R	12849960	2R_12849960_SNP [dm3] 2R_16962455_SNP [dm6]	G	A	1.035e^-10	2.568e^-6	INTERGENIC
2R	12849974	2R_12849974_SNP [dm3] 2R_16962469_SNP [dm6]	G	A	1.035e^-10	2.568e^-6	INTERGENIC
3R	22116244	3R_22116244_SNP [dm3] 3R_26290522_SNP [dm6]	A	T	1.060e^-10	2.596e^-6	INTERGENIC
2R	9022799	2R_9022799_SNP [dm3] 2R_13135294_SNP [dm6]	A	C	1.165e^-10	2.772e^-6	SYNONYMOUS_CODING Cap-G	TF binding site mE1_TFBS_sens
3R	19734400	3R_19734400_SNP [dm3] 3R_23908678_SNP [dm6]	T	A	1.166e^-10	2.772e^-6	INTRON sba
2L	19482886	2L_19482886_SNP [dm3] 2L_19482886_SNP [dm6]	A	G	1.177e^-10	2.772e^-6	UTR_3_PRIME CG10195
X	8287161	X_8287161_SNP [dm3] X_8393128_SNP [dm6]	A	G	1.336e^-10	3.107e^-6	INTERGENIC
2R	5816832	2R_5816832_SNP [dm3] 2R_9929327_SNP [dm6]	A	G	1.362e^-10	3.123e^-6	UTR_5_PRIME Mef2 INTRON Mef2	regulatory region FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	5071989	2R_5071989_SNP [dm3] 2R_9184484_SNP [dm6]	C	A	1.377e^-10	3.123e^-6	INTRON ltd EXON CR44284	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	19486143	2L_19486143_SNP [dm3] 2L_19486143_SNP [dm6]	C	T	1.494e^-10	3.147e^-6	NON_SYNONYMOUS_CODING CG13084	TF binding site mE1_TFBS_chinmo
2L	19488097	2L_19488097_SNP [dm3] 2L_19488097_SNP [dm6]	G	A	1.494e^-10	3.147e^-6	NON_SYNONYMOUS_CODING CG13083 DOWNSTREAM CG10194	TF binding site mE1_TFBS_sens
2L	19489381	2L_19489381_SNP [dm3] 2L_19489381_SNP [dm6]	G	A	1.494e^-10	3.147e^-6	SYNONYMOUS_CODING CG10194 UPSTREAM CG18094 DOWNSTREAM CG13083	TF binding site mE1_TFBS_HSA
2L	19493627	2L_19493627_SNP [dm3] 2L_19493627_SNP [dm6]	A	G	1.494e^-10	3.147e^-6	UTR_5_PRIME swm UPSTREAM CG10189 INTRON swm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	19494454	2L_19494454_SNP [dm3] 2L_19494454_SNP [dm6]	G	A	1.494e^-10	3.147e^-6	NON_SYNONYMOUS_CODING swm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19497117	2L_19497117_SNP [dm3] 2L_19497117_SNP [dm6]	C	T	1.494e^-10	3.147e^-6	INTRON swm	TF binding site mE1_TFBS_cad
2L	12264243	2L_12264243_SNP [dm3] 2L_12264243_SNP [dm6]	T	C	1.556e^-10	3.147e^-6	INTRON aret
2L	12264421	2L_12264421_SNP [dm3] 2L_12264421_SNP [dm6]	A	T	1.556e^-10	3.147e^-6	INTRON aret
2R	4841844	2R_4841844_SNP [dm3] 2R_8954339_SNP [dm6]	A	C	1.556e^-10	3.147e^-6	INTRON babo
3L	13023880	3L_13023880_SNP [dm3] 3L_13030780_SNP [dm6]	T	C	1.556e^-10	3.147e^-6	INTRON CG17672	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	24021246	3L_24021246_SNP [dm3] 3L_24028146_SNP [dm6]	C	A	1.576e^-10	3.153e^-6	UPSTREAM CG40045 INTERGENIC
2L	19485754	2L_19485754_SNP [dm3] 2L_19485754_SNP [dm6]	A	T	1.677e^-10	3.318e^-6	NON_SYNONYMOUS_CODING CG13084	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14386489	2R_14386489_SNP [dm3] 2R_18498984_SNP [dm6]	C	T	2.139e^-10	4.152e^-6	UPSTREAM CG30116 INTERGENIC
2L	19484604	2L_19484604_SNP [dm3] 2L_19484604_SNP [dm6]	C	T	2.142e^-10	4.152e^-6	UTR_5_PRIME CG10195 UPSTREAM CG13084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	7751575	3L_7751575_SNP [dm3] 3L_7758475_SNP [dm6]	A	C	2.232e^-10	4.280e^-6	NON_SYNONYMOUS_CODING CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17446105	2L_17446105_INS [dm3] 2L_17446105_INS [dm6]	G	GAATAG	2.338e^-10	4.396e^-6	UPSTREAM dl INTRON dl	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26653188	3R_26653188_SNP [dm3] 3R_30827466_SNP [dm6]	G	C	2.339e^-10	4.396e^-6	UPSTREAM CG15544 DOWNSTREAM cindr INTERGENIC
2L	14859632	2L_14859632_SNP [dm3] 2L_14859632_SNP [dm6]	G	A	2.380e^-10	4.427e^-6	INTERGENIC
X	3797435	X_3797435_SNP [dm3] X_3903402_SNP [dm6]	A	G	2.628e^-10	4.776e^-6	INTRON CG42541
2R	8859630	2R_8859630_SNP [dm3] 2R_12972125_SNP [dm6]	G	A	2.650e^-10	4.776e^-6	INTRON Psc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3791081	X_3791081_SNP [dm3] X_3897048_SNP [dm6]	T	C	2.650e^-10	4.776e^-6	INTRON CG42541
3R	18749162	3R_18749162_SNP [dm3] 3R_22923440_SNP [dm6]	T	A	2.670e^-10	4.776e^-6	UTR_5_PRIME CG6660 INTRON klg
2L	19479271	2L_19479271_SNP [dm3] 2L_19479271_SNP [dm6]	G	A	2.711e^-10	4.787e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	4741013	2R_4741013_SNP [dm3] 2R_8853508_SNP [dm6]	T	C	2.727e^-10	4.787e^-6	UTR_3_PRIME sns	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19486850	2L_19486850_SNP [dm3] 2L_19486850_SNP [dm6]	G	C	3.643e^-10	6.335e^-6	UPSTREAM CG13083 DOWNSTREAM CG13084 INTERGENIC
2L	19486871	2L_19486871_SNP [dm3] 2L_19486871_SNP [dm6]	T	G	3.856e^-10	6.642e^-6	UPSTREAM CG13083 DOWNSTREAM CG13084 INTERGENIC
X	6333676	X_6333676_SNP [dm3] X_6439643_SNP [dm6]	A	T	3.999e^-10	6.826e^-6	INTRON CG42340
2R	9428728	2R_9428728_SNP [dm3] 2R_13541223_SNP [dm6]	A	G	4.209e^-10	7.119e^-6	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17241666	2L_17241666_SNP [dm3] 2L_17241666_SNP [dm6]	A	T	4.297e^-10	7.171e^-6	INTRON beat-IIIc
3R	22590083	3R_22590083_SNP [dm3] 3R_26764361_SNP [dm6]	T	C	4.317e^-10	7.171e^-6	INTERGENIC
X	11030459	X_11030459_SNP [dm3] X_11136426_SNP [dm6]	G	A	4.692e^-10	7.725e^-6	UTR_5_PRIME Klp10A UPSTREAM Klp10A INTRON Klp10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	8828717	2R_8828717_SNP [dm3] 2R_12941212_SNP [dm6]	G	C	4.982e^-10	8.131e^-6	DOWNSTREAM Sans INTRON Mdr49
3L	2003457	3L_2003457_SNP [dm3] 3L_2003457_SNP [dm6]	G	A	5.047e^-10	8.165e^-6	UTR_3_PRIME CG42841
2R	10678561	2R_10678561_SNP [dm3] 2R_14791056_SNP [dm6]	G	A	5.366e^-10	8.533e^-6	INTRON kn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10678612	2R_10678612_SNP [dm3] 2R_14791107_SNP [dm6]	T	C	5.366e^-10	8.533e^-6	INTRON kn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9646494	2R_9646494_SNP [dm3] 2R_13758989_SNP [dm6]	A	G	5.436e^-10	8.571e^-6	DOWNSTREAM CG6280 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	22086809	3R_22086809_SNP [dm3] 3R_26261087_SNP [dm6]	C	T	6.440e^-10	1.007e^-5	INTRON Ald EXON CR44321	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	22312855	2L_22312855_SNP [dm3] 2L_22312855_SNP [dm6]	T	G	6.652e^-10	1.031e^-5	INTRON CG17018
3L	24036407	3L_24036407_SNP [dm3] 3L_24043307_SNP [dm6]	C	T	7.379e^-10	1.135e^-5	INTERGENIC
3L	11518629	3L_11518629_SNP [dm3] 3L_11525529_SNP [dm6]	A	T	8.400e^-10	1.281e^-5	INTRON Mob2	TF binding site mE1_TFBS_cad
2R	11538095	2R_11538095_SNP [dm3] 2R_15650590_SNP [dm6]	C	A	8.899e^-10	1.335e^-5	DOWNSTREAM CG42524 INTRON CG42524
2R	7709862	2R_7709862_SNP [dm3] 2R_11822357_SNP [dm6]	G	A	8.899e^-10	1.335e^-5	INTERGENIC
2R	5111807	2R_5111807_SNP [dm3] 2R_9224302_SNP [dm6]	T	C	9.073e^-10	1.350e^-5	INTERGENIC
2L	10922478	2L_10922478_SNP [dm3] 2L_10922478_SNP [dm6]	C	A	9.232e^-10	1.363e^-5	INTRON dpr2
2R	15877539	2R_15877539_DEL [dm3] 2R_19990034_DEL [dm6]	CC	C	9.637e^-10	1.406e^-5	INTERGENIC
3L	9283050	3L_9283050_SNP [dm3] 3L_9289950_SNP [dm6]	A	G	9.671e^-10	1.406e^-5	INTERGENIC
2R	20514402	2R_20514402_SNP [dm3] 2R_24626879_SNP [dm6]	C	A	1.004e^-9	1.448e^-5	INTRON CG13594	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	15552569	2R_15552569_SNP [dm3] 2R_19665064_SNP [dm6]	A	T	1.041e^-9	1.490e^-5	DOWNSTREAM hrg INTRON hrg	TF binding site BDTNP1_TFBS_dl
2R	8919108	2R_8919108_SNP [dm3] 2R_13031603_SNP [dm6]	G	A	1.119e^-9	1.589e^-5	INTERGENIC
3L	7855173	3L_7855173_SNP [dm3] 3L_7862073_SNP [dm6]	A	G	1.178e^-9	1.647e^-5	INTRON Pdp1
3L	13756498	3L_13756498_SNP [dm3] 3L_13763398_SNP [dm6]	G	A	1.195e^-9	1.647e^-5	INTRON bru-3
2R	20514849	2R_20514849_SNP [dm3] 2R_24627326_SNP [dm6]	G	A	1.206e^-9	1.647e^-5	INTRON CG13594	TF binding site BDTNP1_TFBS_sna
3L	11447037	3L_11447037_SNP [dm3] 3L_11453937_SNP [dm6]	A	G	1.216e^-9	1.647e^-5	INTERGENIC
2R	10020493	2R_10020493_SNP [dm3] 2R_14132988_SNP [dm6]	C	T	1.222e^-9	1.647e^-5	INTRON Prosap	TF binding site mE1_TFBS_inv
2R	10020625	2R_10020625_SNP [dm3] 2R_14133120_SNP [dm6]	A	G	1.222e^-9	1.647e^-5	INTRON Prosap	TF binding site mE1_TFBS_inv
2R	7713990	2R_7713990_SNP [dm3] 2R_11826485_SNP [dm6]	G	A	1.222e^-9	1.647e^-5	SYNONYMOUS_CODING CG13192 DOWNSTREAM Sobp	TF binding site mE1_TFBS_sens
X	8099827	X_8099827_SNP [dm3] X_8205794_SNP [dm6]	G	A	1.319e^-9	1.765e^-5	INTRON sdt
2R	20517694	2R_20517694_SNP [dm3] 2R_24630171_SNP [dm6]	G	T	1.340e^-9	1.780e^-5	UPSTREAM Cyp9c1 DOWNSTREAM CR43787 INTRON CG13594
2L	21925064	2L_21925064_SNP [dm3] 2L_21925064_SNP [dm6]	C	G	1.626e^-9	2.145e^-5	INTERGENIC	transposable element FlyBase
2R	20529727	2R_20529727_SNP [dm3] 2R_24642204_SNP [dm6]	C	G	1.683e^-9	2.169e^-5	NON_SYNONYMOUS_CODING CG4781	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15040215	2L_15040215_SNP [dm3] 2L_15040215_SNP [dm6]	G	A	1.777e^-9	2.169e^-5	SYNONYMOUS_CODING Su_H_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	1907948	2L_1907948_SNP [dm3] 2L_1907948_SNP [dm6]	T	C	1.777e^-9	2.169e^-5	INTRON CG7337
2L	1908423	2L_1908423_SNP [dm3] 2L_1908423_SNP [dm6]	A	T	1.777e^-9	2.169e^-5	INTRON CG7337	TF binding site mE1_TFBS_HSA
2R	9947202	2R_9947202_SNP [dm3] 2R_14059697_SNP [dm6]	C	T	1.777e^-9	2.169e^-5	UTR_3_PRIME mam DOWNSTREAM mam & 1 other
X	5040097	X_5040097_INS [dm3] X_5146064_INS [dm6]	C	AA	1.777e^-9	2.169e^-5	INTRON rg & 1 other
X	5040417	X_5040417_SNP [dm3] X_5146384_SNP [dm6]	T	C	1.777e^-9	2.169e^-5	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13708573	3L_13708573_SNP [dm3] 3L_13715473_SNP [dm6]	C	T	1.804e^-9	2.169e^-5	INTRON bru-3
3L	13716522	3L_13716522_SNP [dm3] 3L_13723422_SNP [dm6]	G	T	1.804e^-9	2.169e^-5	INTRON bru-3
2L	16645589	2L_16645589_SNP [dm3] 2L_16645589_SNP [dm6]	C	G	1.812e^-9	2.169e^-5	INTRON CG42389
X	8099821	X_8099821_SNP [dm3] X_8205788_SNP [dm6]	T	G	1.815e^-9	2.169e^-5	INTRON sdt
X	8099822	X_8099822_SNP [dm3] X_8205789_SNP [dm6]	T	A	1.815e^-9	2.169e^-5	INTRON sdt
2R	20523596	2R_20523596_SNP [dm3] 2R_24636073_SNP [dm6]	A	C	1.827e^-9	2.169e^-5	INTRON CG13594	TF binding site mE1_TFBS_chinmo
2R	200564	2R_200564_SNP [dm3] 2R_4313059_SNP [dm6]	T	A	1.827e^-9	2.169e^-5	INTERGENIC
2L	13359710	2L_13359710_SNP [dm3] 2L_13359710_SNP [dm6]	G	A	1.831e^-9	2.169e^-5	DOWNSTREAM CG9377 INTERGENIC	TF binding site mE1_TFBS_cad
2L	13359904	2L_13359904_SNP [dm3] 2L_13359904_SNP [dm6]	A	G	1.831e^-9	2.169e^-5	UTR_3_PRIME CG9377	TF binding site mE1_TFBS_cad
2L	13359706	2L_13359706_SNP [dm3] 2L_13359706_SNP [dm6]	C	A	1.859e^-9	2.189e^-5	DOWNSTREAM CG9377 INTERGENIC	TF binding site mE1_TFBS_cad
2L	22519941	2L_22519941_SNP [dm3] 2L_22627209_SNP [dm6]	T	C	1.985e^-9	2.315e^-5	INTRON CG40006
2L	19639182	2L_19639182_SNP [dm3] 2L_19639182_SNP [dm6]	G	C	1.991e^-9	2.315e^-5	INTRON Lar
2L	13359711	2L_13359711_SNP [dm3] 2L_13359711_SNP [dm6]	A	G	2.136e^-9	2.426e^-5	DOWNSTREAM CG9377 INTERGENIC	TF binding site mE1_TFBS_cad
2L	13359852	2L_13359852_SNP [dm3] 2L_13359852_SNP [dm6]	A	T	2.136e^-9	2.426e^-5	DOWNSTREAM CG9377 INTERGENIC	TF binding site mE1_TFBS_cad
2L	13359859	2L_13359859_DEL [dm3] 2L_13359859_DEL [dm6]	CTAC	C	2.136e^-9	2.426e^-5	DOWNSTREAM CG9377 INTERGENIC	TF binding site mE1_TFBS_cad
3R	23246093	3R_23246093_SNP [dm3] 3R_27420371_SNP [dm6]	G	A	2.148e^-9	2.426e^-5	INTRON side
2R	20480244	2R_20480244_SNP [dm3] 2R_24592721_SNP [dm6]	A	T	2.151e^-9	2.426e^-5	UTR_3_PRIME pio INTRON pio
2R	11901559	2R_11901559_SNP [dm3] 2R_16014054_SNP [dm6]	G	A	2.360e^-9	2.627e^-5	UPSTREAM Rrp42 DOWNSTREAM CG8389 INTRON Prosbeta1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_cnc
X	5040271	X_5040271_SNP [dm3] X_5146238_SNP [dm6]	T	G	2.360e^-9	2.627e^-5	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13896225	2L_13896225_SNP [dm3] 2L_13896225_SNP [dm6]	C	G	2.397e^-9	2.627e^-5	NON_SYNONYMOUS_CODING CenG1A	TF binding site mE1_TFBS_cad
X	5040110	X_5040110_SNP [dm3] X_5146077_SNP [dm6]	T	C	2.399e^-9	2.627e^-5	INTRON rg & 1 other
2L	13915157	2L_13915157_SNP [dm3] 2L_13915157_SNP [dm6]	T	C	2.415e^-9	2.627e^-5	SYNONYMOUS_CODING Ance-3
2L	13915373	2L_13915373_SNP [dm3] 2L_13915373_SNP [dm6]	A	G	2.415e^-9	2.627e^-5	INTRON Ance-3	TF binding site BDTNP1_TFBS_twi
2L	11403272	2L_11403272_SNP [dm3] 2L_11403272_SNP [dm6]	A	G	2.428e^-9	2.627e^-5	INTERGENIC	regulatory region REDfly_CRMs
2L	11738233	2L_11738233_SNP [dm3] 2L_11738233_SNP [dm6]	T	C	2.452e^-9	2.636e^-5	UPSTREAM Vha100-5 DOWNSTREAM CR44145 INTERGENIC
2L	18298677	2L_18298677_DEL [dm3] 2L_18298677_DEL [dm6]	ACTACTGC	T	2.520e^-9	2.694e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	8099815	X_8099815_SNP [dm3] X_8205782_SNP [dm6]	G	T	2.671e^-9	2.823e^-5	INTRON sdt
X	8099816	X_8099816_SNP [dm3] X_8205783_SNP [dm6]	A	T	2.671e^-9	2.823e^-5	INTRON sdt
2R	19318064	2R_19318064_SNP [dm3] 2R_23430541_SNP [dm6]	C	A	2.694e^-9	2.831e^-5	INTRON CG9815
2R	15014642	2R_15014642_SNP [dm3] 2R_19127137_SNP [dm6]	A	T	2.734e^-9	2.858e^-5	UPSTREAM CG15117 INTRON CG15117
2L	15038856	2L_15038856_SNP [dm3] 2L_15038856_SNP [dm6]	A	G	2.987e^-9	3.105e^-5	START_GAINED CIAPIN1 UTR_5_PRIME CIAPIN1 UPSTREAM Su_H_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	15052238	2L_15052238_SNP [dm3] 2L_15052238_SNP [dm6]	C	A	3.004e^-9	3.105e^-5	INTRON ck	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	6826025	X_6826025_SNP [dm3] X_6931992_SNP [dm6]	A	T	3.029e^-9	3.113e^-5	INTRON CG14431
2R	12637185	2R_12637185_SNP [dm3] 2R_16749680_SNP [dm6]	G	A	3.192e^-9	3.249e^-5	UPSTREAM Acp53C14b DOWNSTREAM Acp53Ea INTERGENIC
2L	22141830	2L_22141830_SNP [dm3] 2L_22141830_SNP [dm6]	G	A	3.210e^-9	3.249e^-5	SPLICE_SITE_ACCEPTOR CG42748 SPLICE_SITE_REGION CG42748 INTRON CG42748	TF binding site mE1_TFBS_cad
2L	13389642	2L_13389642_SNP [dm3] 2L_13389642_SNP [dm6]	A	G	3.213e^-9	3.249e^-5	SYNONYMOUS_CODING CG7099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	22921701	2L_22921701_SNP [dm3] 2L_23028969_SNP [dm6]	T	G	3.237e^-9	3.255e^-5	INTERGENIC
2R	11327687	2R_11327687_SNP [dm3] 2R_15440182_SNP [dm6]	G	A	3.366e^-9	3.367e^-5	INTRON CG43729
2L	18298688	2L_18298688_SNP [dm3] 2L_18298688_SNP [dm6]	A	G	3.417e^-9	3.399e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19486581	2L_19486581_SNP [dm3] 2L_19486581_SNP [dm6]	A	C	3.466e^-9	3.430e^-5	UPSTREAM CG13083 DOWNSTREAM CG13084 INTERGENIC
2L	8224792	2L_8224792_SNP [dm3] 2L_8224792_SNP [dm6]	G	A	3.578e^-9	3.522e^-5	SYNONYMOUS_CODING Pvr
2R	5111759	2R_5111759_SNP [dm3] 2R_9224254_SNP [dm6]	A	G	3.608e^-9	3.525e^-5	INTERGENIC
2L	12834773	2L_12834773_SNP [dm3] 2L_12834773_SNP [dm6]	G	A	3.618e^-9	3.525e^-5	INTERGENIC
2R	6546588	2R_6546588_SNP [dm3] 2R_10659083_SNP [dm6]	T	C	3.701e^-9	3.586e^-5	INTERGENIC
2R	5153842	2R_5153842_SNP [dm3] 2R_9266337_SNP [dm6]	A	T	4.019e^-9	3.874e^-5	INTRON Pkn
2L	15036090	2L_15036090_SNP [dm3] 2L_15036090_SNP [dm6]	A	G	4.297e^-9	4.121e^-5	DOWNSTREAM CIAPIN1 INTRON yellow-c
3L	23873204	3L_23873204_SNP [dm3] 3L_23880104_SNP [dm6]	C	A	4.483e^-9	4.277e^-5	INTRON CG40470
2R	4241634	2R_4241634_SNP [dm3] 2R_8354129_SNP [dm6]	G	T	4.675e^-9	4.437e^-5	INTRON pdm3
3L	3307494	3L_3307494_SNP [dm3] 3L_3307494_SNP [dm6]	A	C	4.857e^-9	4.587e^-5	UPSTREAM ZnT63C INTRON ZnT63C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5153757	2R_5153757_SNP [dm3] 2R_9266252_SNP [dm6]	T	A	5.028e^-9	4.725e^-5	INTRON Pkn
2R	8920191	2R_8920191_SNP [dm3] 2R_13032686_SNP [dm6]	A	G	5.160e^-9	4.824e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	6461737	2R_6461737_SNP [dm3] 2R_10574232_SNP [dm6]	T	A	5.295e^-9	4.925e^-5	INTRON psq
2L	14093146	2L_14093146_SNP [dm3] 2L_14093146_SNP [dm6]	C	A	5.397e^-9	4.995e^-5	UTR_3_PRIME nAChRalpha5 DOWNSTREAM nAChRalpha5
3L	7859529	3L_7859529_SNP [dm3] 3L_7866429_SNP [dm6]	T	G	5.944e^-9	5.475e^-5	INTRON Pdp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	13350029	2L_13350029_SNP [dm3] 2L_13350029_SNP [dm6]	C	T	6.291e^-9	5.766e^-5	UTR_3_PRIME CG9395
2L	14036309	2L_14036309_SNP [dm3] 2L_14036309_SNP [dm6]	C	T	6.352e^-9	5.791e^-5	EXON CR45284
3L	1463657	3L_1463657_SNP [dm3] 3L_1463657_SNP [dm6]	C	A	6.381e^-9	5.791e^-5	UPSTREAM CR44842 & 1 other INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	22519876	2L_22519876_SNP [dm3] 2L_22627144_SNP [dm6]	C	T	6.571e^-9	5.909e^-5	INTRON CG40006
2R	2801875	2R_2801875_SNP [dm3] 2R_6914370_SNP [dm6]	C	T	6.574e^-9	5.909e^-5	INTRON CG30158
2R	5085995	2R_5085995_SNP [dm3] 2R_9198490_SNP [dm6]	A	C	6.694e^-9	5.987e^-5	INTRON unpg	transposable element FlyBase
2R	13168572	2R_13168572_SNP [dm3] 2R_17281067_SNP [dm6]	G	T	6.823e^-9	6.074e^-5	INTRON mbl
2R	5810800	2R_5810800_SNP [dm3] 2R_9923295_SNP [dm6]	G	C	7.692e^-9	6.815e^-5	INTRON Mef2
2R	7576380	2R_7576380_SNP [dm3] 2R_11688875_SNP [dm6]	G	T	7.777e^-9	6.857e^-5	UTR_3_PRIME wal DOWNSTREAM wal & 1 other
2R	6149922	2R_6149922_SNP [dm3] 2R_10262417_SNP [dm6]	T	A	7.866e^-9	6.903e^-5	DOWNSTREAM CR30009 EXON CR30009
2R	4774930	2R_4774930_SNP [dm3] 2R_8887425_SNP [dm6]	C	T	8.028e^-9	6.979e^-5	SYNONYMOUS_CODING RyR DOWNSTREAM CG8272	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	4779089	2R_4779089_SNP [dm3] 2R_8891584_SNP [dm6]	A	G	8.028e^-9	6.979e^-5	UPSTREAM Dmn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_D mE1_TFBS_HSA
2R	4394576	2R_4394576_SNP [dm3] 2R_8507071_SNP [dm6]	G	A	8.113e^-9	7.021e^-5	INTRON mtt
3R	7254513	3R_7254513_SNP [dm3] 3R_11428791_SNP [dm6]	T	A	8.255e^-9	7.111e^-5	SYNONYMOUS_CODING CG5270	TF binding site mE1_TFBS_cad
3L	9306496	3L_9306496_SNP [dm3] 3L_9313396_SNP [dm6]	C	T	8.350e^-9	7.159e^-5	INTERGENIC
2L	12204811	2L_12204811_SNP [dm3] 2L_12204811_SNP [dm6]	C	A	8.502e^-9	7.255e^-5	INTRON aret
2L	18338977	2L_18338977_SNP [dm3] 2L_18338977_SNP [dm6]	G	C	8.831e^-9	7.309e^-5	INTRON Fas3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11693645	2L_11693645_SNP [dm3] 2L_11693645_SNP [dm6]	C	G	8.918e^-9	7.309e^-5	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11693651	2L_11693651_SNP [dm3] 2L_11693651_SNP [dm6]	G	A	8.918e^-9	7.309e^-5	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11693652	2L_11693652_SNP [dm3] 2L_11693652_SNP [dm6]	T	C	8.918e^-9	7.309e^-5	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11693656	2L_11693656_SNP [dm3] 2L_11693656_SNP [dm6]	C	T	8.918e^-9	7.309e^-5	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11693674	2L_11693674_SNP [dm3] 2L_11693674_SNP [dm6]	T	C	8.918e^-9	7.309e^-5	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11695185	2L_11695185_SNP [dm3] 2L_11695185_SNP [dm6]	A	C	8.918e^-9	7.309e^-5	SYNONYMOUS_CODING CG4988
2L	11695216	2L_11695216_SNP [dm3] 2L_11695216_SNP [dm6]	T	A	8.918e^-9	7.309e^-5	INTRON CG4988
2R	7576152	2R_7576152_SNP [dm3] 2R_11688647_SNP [dm6]	A	C	8.918e^-9	7.309e^-5	UTR_3_PRIME wal DOWNSTREAM wal & 1 other
2R	223036	2R_223036_INS [dm3] 2R_4335531_INS [dm6]	G	GCTAG	9.089e^-9	7.416e^-5	INTRON Gprk1
2L	14946611	2L_14946611_SNP [dm3] 2L_14946611_SNP [dm6]	G	C	9.398e^-9	7.635e^-5	INTRON CG42313
3L	16725909	3L_16725909_SNP [dm3] 3L_16732809_SNP [dm6]	C	G	9.608e^-9	7.772e^-5	UPSTREAM CG9701 INTERGENIC
2R	4907062	2R_4907062_SNP [dm3] 2R_9019557_SNP [dm6]	T	G	9.882e^-9	7.959e^-5	DOWNSTREAM CG13747 INTRON CG8170	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	20466593	2L_20466593_SNP [dm3] 2L_20466593_SNP [dm6]	T	A	9.977e^-9	8.001e^-5	INTRON CR44980
2L	13390139	2L_13390139_SNP [dm3] 2L_13390139_SNP [dm6]	C	A	1.028e^-8	8.210e^-5	NON_SYNONYMOUS_CODING CG7099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	15719183	2R_15719183_SNP [dm3] 2R_19831678_SNP [dm6]	C	G	1.071e^-8	8.514e^-5	UTR_3_PRIME Toll-7
3R	23545167	3R_23545167_SNP [dm3] 3R_27719445_SNP [dm6]	C	A	1.097e^-8	8.688e^-5	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23258633	3R_23258633_SNP [dm3] 3R_27432911_SNP [dm6]	T	G	1.170e^-8	9.221e^-5	INTRON side
2L	11695290	2L_11695290_SNP [dm3] 2L_11695290_SNP [dm6]	T	C	1.177e^-8	9.240e^-5	INTRON CG4988
2L	20473616	2L_20473616_SNP [dm3] 2L_20473616_SNP [dm6]	G	A	1.191e^-8	9.280e^-5	UPSTREAM CG43233 INTRON CR44980
2R	20213475	2R_20213475_SNP [dm3] 2R_24325952_SNP [dm6]	A	T	1.192e^-8	9.280e^-5	INTRON CR44810
2R	776190	2R_776190_SNP [dm3] 2R_4888685_SNP [dm6]	G	A	1.211e^-8	9.389e^-5	INTERGENIC
2R	4397999	2R_4397999_SNP [dm3] 2R_8510494_SNP [dm6]	A	G	1.238e^-8	9.558e^-5	INTRON mtt
X	16608608	X_16608608_DEL [dm3] X_16714575_DEL [dm6]	TCTGGGC	T	1.246e^-8	9.575e^-5	UTR_3_PRIME CG34325 DOWNSTREAM CG13008
2L	12259717	2L_12259717_SNP [dm3] 2L_12259717_SNP [dm6]	C	T	1.258e^-8	9.631e^-5	INTRON aret
2R	4907064	2R_4907064_SNP [dm3] 2R_9019559_SNP [dm6]	G	T	1.316e^-8	1.002e^-4	DOWNSTREAM CG13747 INTRON CG8170	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	10695531	2R_10695531_SNP [dm3] 2R_14808026_SNP [dm6]	A	G	1.319e^-8	1.002e^-4	UPSTREAM kn & 1 other INTERGENIC	regulatory region REDfly_CRMs
2L	12497425	2L_12497425_SNP [dm3] 2L_12497425_SNP [dm6]	A	G	1.332e^-8	1.008e^-4	UPSTREAM t-cup INTRON bun
2R	7115700	2R_7115700_SNP [dm3] 2R_11228195_SNP [dm6]	C	T	1.362e^-8	1.026e^-4	SYNONYMOUS_CODING metro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11327578	2R_11327578_SNP [dm3] 2R_15440073_SNP [dm6]	A	T	1.380e^-8	1.035e^-4	INTRON CG43729
3R	23545163	3R_23545163_SNP [dm3] 3R_27719441_SNP [dm6]	C	T	1.454e^-8	1.086e^-4	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15054321	2L_15054321_SNP [dm3] 2L_15054321_SNP [dm6]	A	T	1.460e^-8	1.086e^-4	INTRON ck	regulatory region REDfly_CRMs
2R	576560	2R_576560_SNP [dm3] 2R_4689055_SNP [dm6]	A	G	1.509e^-8	1.118e^-4	INTERGENIC	transposable element FlyBase
3L	11525066	3L_11525066_SNP [dm3] 3L_11531966_SNP [dm6]	T	C	1.524e^-8	1.125e^-4	INTRON Mob2
3R	23324433	3R_23324433_SNP [dm3] 3R_27498711_SNP [dm6]	A	G	1.532e^-8	1.127e^-4	INTERGENIC
2R	20509245	2R_20509245_SNP [dm3] 2R_24621722_SNP [dm6]	C	A	1.553e^-8	1.129e^-4	INTRON CG13594
2R	20509289	2R_20509289_SNP [dm3] 2R_24621766_SNP [dm6]	G	A	1.553e^-8	1.129e^-4	INTRON CG13594
2R	20510789	2R_20510789_SNP [dm3] 2R_24623266_SNP [dm6]	G	T	1.553e^-8	1.129e^-4	INTRON CG13594
2R	782454	2R_782454_SNP [dm3] 2R_4894949_SNP [dm6]	C	T	1.570e^-8	1.129e^-4	DOWNSTREAM CG44102 INTERGENIC	transposable element FlyBase
3L	13729693	3L_13729693_SNP [dm3] 3L_13736593_SNP [dm6]	C	A	1.572e^-8	1.129e^-4	INTRON bru-3	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3L	13744660	3L_13744660_SNP [dm3] 3L_13751560_SNP [dm6]	G	T	1.572e^-8	1.129e^-4	INTRON bru-3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14729234	2L_14729234_SNP [dm3] 2L_14729234_SNP [dm6]	C	A	1.606e^-8	1.149e^-4	NON_SYNONYMOUS_CODING CG42685	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6118389	3R_6118389_SNP [dm3] 3R_10292667_SNP [dm6]	A	G	1.778e^-8	1.221e^-4	SYNONYMOUS_CODING CG43143
X	6798850	X_6798850_INS [dm3] X_6904817_INS [dm6]	A	AA	1.784e^-8	1.221e^-4	INTERGENIC
2L	13804643	2L_13804643_SNP [dm3] 2L_13804643_SNP [dm6]	T	A	1.803e^-8	1.221e^-4	INTRON CAH1
3L	14049950	3L_14049950_INS [dm3] 3L_14056850_INS [dm6]	C	CACA	1.803e^-8	1.221e^-4	INTRON CG32138	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3168570	X_3168570_SNP [dm3] X_3274537_SNP [dm6]	T	C	1.803e^-8	1.221e^-4	INTRON dnc
3R	22817343	3R_22817343_SNP [dm3] 3R_26991621_SNP [dm6]	A	G	1.804e^-8	1.221e^-4	INTERGENIC
2L	11003290	2L_11003290_INS [dm3] 2L_11003290_INS [dm6]	C	TT	1.812e^-8	1.221e^-4	DOWNSTREAM lectin-33A INTRON RpL9
2L	11307388	2L_11307388_SNP [dm3] 2L_11307388_SNP [dm6]	C	A	1.812e^-8	1.221e^-4	UPSTREAM CR43721 INTERGENIC
2L	13610854	2L_13610854_SNP [dm3] 2L_13610854_SNP [dm6]	C	G	1.812e^-8	1.221e^-4	DOWNSTREAM mir-2489 INTRON kuz
2R	11479723	2R_11479723_SNP [dm3] 2R_15592218_SNP [dm6]	T	C	1.812e^-8	1.221e^-4	INTERGENIC
2R	6278119	2R_6278119_SNP [dm3] 2R_10390614_SNP [dm6]	C	G	1.812e^-8	1.221e^-4	INTRON CG42732
2R	6483588	2R_6483588_SNP [dm3] 2R_10596083_SNP [dm6]	A	G	1.812e^-8	1.221e^-4	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	6483920	2R_6483920_SNP [dm3] 2R_10596415_SNP [dm6]	A	G	1.812e^-8	1.221e^-4	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7105094	2R_7105094_SNP [dm3] 2R_11217589_SNP [dm6]	G	A	1.812e^-8	1.221e^-4	SYNONYMOUS_CODING CG9084 DOWNSTREAM shn
X	3771981	X_3771981_SNP [dm3] X_3877948_SNP [dm6]	G	T	1.812e^-8	1.221e^-4	SYNONYMOUS_CODING CG2930 INTRON CG2930
X	4532907	X_4532907_SNP [dm3] X_4638874_SNP [dm6]	A	T	1.812e^-8	1.221e^-4	UTR_3_PRIME pon DOWNSTREAM CG3081
2R	4570142	2R_4570142_DEL [dm3] 2R_8682637_DEL [dm6]	TC	T	1.828e^-8	1.228e^-4	UTR_3_PRIME Acsl UPSTREAM tRNA:L2:44EF DOWNSTREAM Acsl
2L	1008156	2L_1008156_DEL [dm3] 2L_1008156_DEL [dm6]	AGA	A	1.840e^-8	1.231e^-4	DOWNSTREAM IA-2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_Trl
3L	16157906	3L_16157906_SNP [dm3] 3L_16164806_SNP [dm6]	G	A	1.848e^-8	1.233e^-4	UPSTREAM CG5151 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	10169706	3R_10169706_SNP [dm3] 3R_14343984_SNP [dm6]	C	G	1.924e^-8	1.278e^-4	INTRON NK7.1
2R	20508446	2R_20508446_SNP [dm3] 2R_24620923_SNP [dm6]	G	A	1.983e^-8	1.313e^-4	NON_SYNONYMOUS_CODING CG13594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20224317	2R_20224317_SNP [dm3] 2R_24336794_SNP [dm6]	A	T	2.086e^-8	1.376e^-4	UPSTREAM CR44282 INTERGENIC
2R	7690370	2R_7690370_SNP [dm3] 2R_11802865_SNP [dm6]	A	G	2.200e^-8	1.398e^-4	INTRON ths
2R	20514311	2R_20514311_SNP [dm3] 2R_24626788_SNP [dm6]	A	C	2.202e^-8	1.398e^-4	INTRON CG13594	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	8609848	2R_8609848_SNP [dm3] 2R_12722343_SNP [dm6]	T	G	2.227e^-8	1.398e^-4	UTR_5_PRIME CG42663
2L	19486162	2L_19486162_SNP [dm3] 2L_19486162_SNP [dm6]	G	T	2.261e^-8	1.398e^-4	SYNONYMOUS_CODING CG13084	TF binding site mE1_TFBS_chinmo
3L	13752032	3L_13752032_SNP [dm3] 3L_13758932_SNP [dm6]	A	T	2.281e^-8	1.398e^-4	INTRON bru-3
2L	19941530	2L_19941530_SNP [dm3] 2L_19941530_SNP [dm6]	A	G	2.299e^-8	1.398e^-4	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	19941610	2L_19941610_SNP [dm3] 2L_19941610_SNP [dm6]	T	C	2.299e^-8	1.398e^-4	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	10467639	2R_10467639_SNP [dm3] 2R_14580134_SNP [dm6]	G	C	2.299e^-8	1.398e^-4	INTRON ttv
2R	19771514	2R_19771514_SNP [dm3] 2R_23883991_SNP [dm6]	C	T	2.299e^-8	1.398e^-4	INTRON PHDP	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8228349	2L_8228349_SNP [dm3] 2L_8228349_SNP [dm6]	T	A	2.321e^-8	1.398e^-4	INTRON Pvr
2L	11347069	2L_11347069_SNP [dm3] 2L_11347069_SNP [dm6]	T	G	2.323e^-8	1.398e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11347092	2L_11347092_SNP [dm3] 2L_11347092_SNP [dm6]	T	G	2.323e^-8	1.398e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11347137	2L_11347137_SNP [dm3] 2L_11347137_SNP [dm6]	G	A	2.323e^-8	1.398e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11347845	2L_11347845_SNP [dm3] 2L_11347845_SNP [dm6]	T	A	2.323e^-8	1.398e^-4	INTERGENIC
2L	11351211	2L_11351211_SNP [dm3] 2L_11351211_SNP [dm6]	T	A	2.323e^-8	1.398e^-4	INTERGENIC	regulatory region REDfly_CRMs
2L	14605322	2L_14605322_SNP [dm3] 2L_14605322_SNP [dm6]	C	T	2.323e^-8	1.398e^-4	INTRON osp
2L	22097465	2L_22097465_SNP [dm3] 2L_22097465_SNP [dm6]	C	A	2.323e^-8	1.398e^-4	INTERGENIC
2R	6630663	2R_6630663_SNP [dm3] 2R_10743158_SNP [dm6]	T	A	2.324e^-8	1.398e^-4	INTRON CG33144
2R	6632381	2R_6632381_SNP [dm3] 2R_10744876_SNP [dm6]	A	T	2.324e^-8	1.398e^-4	INTRON CG33144
2R	6632382	2R_6632382_SNP [dm3] 2R_10744877_SNP [dm6]	A	G	2.324e^-8	1.398e^-4	INTRON CG33144
2L	14414479	2L_14414479_SNP [dm3] 2L_14414479_SNP [dm6]	C	A	2.336e^-8	1.398e^-4	INTERGENIC
2L	16067093	2L_16067093_SNP [dm3] 2L_16067093_SNP [dm6]	A	G	2.336e^-8	1.398e^-4	INTRON beat-Ia
2L	18152688	2L_18152688_SNP [dm3] 2L_18152688_SNP [dm6]	C	T	2.336e^-8	1.398e^-4	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2R	2057832	2R_2057832_DEL [dm3] 2R_6170327_DEL [dm6]	GTGTTTACTA	G	2.336e^-8	1.398e^-4	DOWNSTREAM tRNA:R2:42Ab INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19681330	X_19681330_SNP [dm3] X_19787297_SNP [dm6]	T	C	2.338e^-8	1.398e^-4	SPLICE_SITE_ACCEPTOR CR44885 INTRON CR44885	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14198335	2L_14198335_SNP [dm3] 2L_14198335_SNP [dm6]	T	G	2.340e^-8	1.398e^-4	UPSTREAM Dyrk2 INTRON Dyrk2
2L	17528326	2L_17528326_SNP [dm3] 2L_17528326_SNP [dm6]	C	T	2.364e^-8	1.398e^-4	SYNONYMOUS_CODING CG15144 DOWNSTREAM CG15145
2R	13876165	2R_13876165_SNP [dm3] 2R_17988660_SNP [dm6]	C	G	2.364e^-8	1.398e^-4	INTRON dpr13
2R	6262273	2R_6262273_SNP [dm3] 2R_10374768_SNP [dm6]	C	T	2.371e^-8	1.398e^-4	INTRON CG42732
2L	14227266	2L_14227266_SNP [dm3] 2L_14227266_SNP [dm6]	T	C	2.375e^-8	1.398e^-4	INTRON Dyrk2
2R	8484936	2R_8484936_DEL [dm3] 2R_12597431_DEL [dm6]	TATACTAC	T	2.375e^-8	1.398e^-4	INTRON Amph
2R	9162392	2R_9162392_SNP [dm3] 2R_13274887_SNP [dm6]	A	G	2.375e^-8	1.398e^-4	INTRON Dh31-R
3L	11647791	3L_11647791_SNP [dm3] 3L_11654691_SNP [dm6]	T	A	2.375e^-8	1.398e^-4	INTRON CG32085
3L	11647792	3L_11647792_SNP [dm3] 3L_11654692_SNP [dm6]	G	T	2.375e^-8	1.398e^-4	INTRON CG32085
2L	19689494	2L_19689494_SNP [dm3] 2L_19689494_SNP [dm6]	C	T	2.382e^-8	1.398e^-4	INTRON Lar
2L	13271065	2L_13271065_SNP [dm3] 2L_13271065_SNP [dm6]	C	G	2.430e^-8	1.422e^-4	INTRON CG44085
2L	18264175	2L_18264175_SNP [dm3] 2L_18264175_SNP [dm6]	A	G	2.476e^-8	1.436e^-4	INTRON CG42750
2L	11377309	2L_11377309_SNP [dm3] 2L_11377309_SNP [dm6]	T	G	2.477e^-8	1.436e^-4	INTERGENIC	regulatory region REDfly_CRMs
2L	11380074	2L_11380074_SNP [dm3] 2L_11380074_SNP [dm6]	A	T	2.477e^-8	1.436e^-4	INTERGENIC	regulatory region REDfly_CRMs
2L	19511966	2L_19511966_SNP [dm3] 2L_19511966_SNP [dm6]	C	T	2.587e^-8	1.494e^-4	INTRON CG10186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17551768	2L_17551768_SNP [dm3] 2L_17551768_SNP [dm6]	G	C	2.600e^-8	1.498e^-4	INTERGENIC
X	20759057	X_20759057_DEL [dm3] X_20888030_DEL [dm6]	AATGAA	A	2.664e^-8	1.530e^-4	INTRON shakB
3L	1384406	3L_1384406_SNP [dm3] 3L_1384406_SNP [dm6]	T	A	2.718e^-8	1.556e^-4	INTRON Ptp61F & 1 other
2R	20220856	2R_20220856_SNP [dm3] 2R_24333333_SNP [dm6]	C	T	2.782e^-8	1.583e^-4	SYNONYMOUS_CODING slbo	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20221448	2R_20221448_SNP [dm3] 2R_24333925_SNP [dm6]	G	A	2.782e^-8	1.583e^-4	START_GAINED slbo UTR_5_PRIME slbo DOWNSTREAM CR44282	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9018729	2R_9018729_SNP [dm3] 2R_13131224_SNP [dm6]	G	C	2.828e^-8	1.604e^-4	SYNONYMOUS_CODING CG13326	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	11347612	2L_11347612_SNP [dm3] 2L_11347612_SNP [dm6]	T	C	2.898e^-8	1.628e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10257420	2R_10257420_SNP [dm3] 2R_14369915_SNP [dm6]	G	A	2.905e^-8	1.628e^-4	NON_SYNONYMOUS_CODING CG34444 DOWNSTREAM CG34443 & 1 other
2R	10267039	2R_10267039_SNP [dm3] 2R_14379534_SNP [dm6]	A	T	2.905e^-8	1.628e^-4	INTRON Dh44-R1
2R	10267057	2R_10267057_SNP [dm3] 2R_14379552_SNP [dm6]	C	A	2.905e^-8	1.628e^-4	INTRON Dh44-R1
2R	7690382	2R_7690382_SNP [dm3] 2R_11802877_SNP [dm6]	T	C	2.927e^-8	1.635e^-4	INTRON ths
2L	16112336	2L_16112336_SNP [dm3] 2L_16112336_SNP [dm6]	T	C	2.991e^-8	1.659e^-4	INTERGENIC
2R	19550991	2R_19550991_SNP [dm3] 2R_23663468_SNP [dm6]	G	A	3.014e^-8	1.659e^-4	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	2433057	2R_2433057_SNP [dm3] 2R_6545552_SNP [dm6]	A	T	3.014e^-8	1.659e^-4	INTRON jing	TF binding site BDTNP1_TFBS_dl
2L	16369224	2L_16369224_SNP [dm3] 2L_16369224_SNP [dm6]	G	C	3.020e^-8	1.659e^-4	INTERGENIC
2L	11347576	2L_11347576_SNP [dm3] 2L_11347576_SNP [dm6]	G	T	3.023e^-8	1.659e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11351284	2L_11351284_SNP [dm3] 2L_11351284_SNP [dm6]	A	C	3.023e^-8	1.659e^-4	INTERGENIC	regulatory region REDfly_CRMs
2L	14414661	2L_14414661_SNP [dm3] 2L_14414661_SNP [dm6]	G	T	3.056e^-8	1.672e^-4	INTERGENIC
2L	17510302	2L_17510302_SNP [dm3] 2L_17510302_SNP [dm6]	G	T	3.090e^-8	1.686e^-4	SYNONYMOUS_CODING Dhc36C
2L	21968927	2L_21968927_SNP [dm3] 2L_21968927_SNP [dm6]	G	A	3.107e^-8	1.686e^-4	INTERGENIC	transposable element FlyBase
2R	6262211	2R_6262211_SNP [dm3] 2R_10374706_SNP [dm6]	C	T	3.108e^-8	1.686e^-4	INTRON CG42732
2R	5322915	2R_5322915_SNP [dm3] 2R_9435410_SNP [dm6]	C	G	3.158e^-8	1.708e^-4	NON_SYNONYMOUS_CODING ced-6 DOWNSTREAM Pdk
2L	19946309	2L_19946309_SNP [dm3] 2L_19946309_SNP [dm6]	G	A	3.232e^-8	1.743e^-4	SYNONYMOUS_CODING sick INTRON sick	TF binding site mE1_TFBS_chinmo
2R	6822582	2R_6822582_SNP [dm3] 2R_10935077_SNP [dm6]	G	A	3.269e^-8	1.758e^-4	INTERGENIC
2L	6349274	2L_6349274_SNP [dm3] 2L_6349274_SNP [dm6]	A	G	3.401e^-8	1.824e^-4	UPSTREAM CG9497 DOWNSTREAM CG9498 INTERGENIC
2L	14198319	2L_14198319_SNP [dm3] 2L_14198319_SNP [dm6]	T	C	3.412e^-8	1.824e^-4	UPSTREAM Dyrk2 INTRON Dyrk2
X	21447978	X_21447978_SNP [dm3] X_21576951_SNP [dm6]	G	A	3.438e^-8	1.833e^-4	INTERGENIC
2R	9427480	2R_9427480_SNP [dm3] 2R_13539975_SNP [dm6]	C	T	3.549e^-8	1.881e^-4	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	9428880	2R_9428880_SNP [dm3] 2R_13541375_SNP [dm6]	C	T	3.549e^-8	1.881e^-4	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8099791	X_8099791_SNP [dm3] X_8205758_SNP [dm6]	A	T	3.653e^-8	1.925e^-4	INTRON sdt
X	8099792	X_8099792_SNP [dm3] X_8205759_SNP [dm6]	A	T	3.653e^-8	1.925e^-4	INTRON sdt
2L	10922232	2L_10922232_SNP [dm3] 2L_10922232_SNP [dm6]	A	C	3.704e^-8	1.947e^-4	INTRON dpr2
X	21457538	X_21457538_SNP [dm3] X_21586511_SNP [dm6]	C	G	3.729e^-8	1.954e^-4	INTERGENIC
2L	17563132	2L_17563132_SNP [dm3] 2L_17563132_SNP [dm6]	G	A	3.794e^-8	1.976e^-4	INTERGENIC
2L	15127308	2L_15127308_SNP [dm3] 2L_15127308_SNP [dm6]	T	C	3.811e^-8	1.976e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12192299	2L_12192299_SNP [dm3] 2L_12192299_SNP [dm6]	G	A	3.819e^-8	1.976e^-4	INTRON aret
2L	19380902	2L_19380902_SNP [dm3] 2L_19380902_SNP [dm6]	T	C	3.831e^-8	1.976e^-4	UPSTREAM CG17350 INTERGENIC
2L	13628921	2L_13628921_MNP [dm3] 2L_13628921_MNP [dm6]	TGG	CCA	3.858e^-8	1.976e^-4	INTRON kuz
2L	15993497	2L_15993497_SNP [dm3] 2L_15993497_SNP [dm6]	G	A	3.858e^-8	1.976e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15995178	2L_15995178_SNP [dm3] 2L_15995178_SNP [dm6]	C	A	3.858e^-8	1.976e^-4	INTERGENIC
2L	15998525	2L_15998525_SNP [dm3] 2L_15998525_SNP [dm6]	T	C	3.858e^-8	1.976e^-4	INTERGENIC
2R	13024929	2R_13024929_SNP [dm3] 2R_17137424_SNP [dm6]	A	C	3.866e^-8	1.976e^-4	DOWNSTREAM Gbp INTRON CG11395
2R	4231806	2R_4231806_SNP [dm3] 2R_8344301_SNP [dm6]	G	A	3.894e^-8	1.985e^-4	INTRON pdm3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8355725	2R_8355725_SNP [dm3] 2R_12468220_SNP [dm6]	C	A	3.911e^-8	1.987e^-4	UPSTREAM CG8545 & 1 other INTRON dgt5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	19233127	2R_19233127_SNP [dm3] 2R_23345604_SNP [dm6]	G	C	3.928e^-8	1.987e^-4	SYNONYMOUS_CODING CG3502	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	11906977	2L_11906977_SNP [dm3] 2L_11906977_SNP [dm6]	C	A	3.938e^-8	1.987e^-4	INTRON Pde1c
2R	6262197	2R_6262197_SNP [dm3] 2R_10374692_SNP [dm6]	A	G	3.941e^-8	1.987e^-4	INTRON CG42732
2L	20787491	2L_20787491_DEL [dm3] 2L_20787491_DEL [dm6]	GGTTTG	G	3.962e^-8	1.992e^-4	UPSTREAM Pomp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
2L	11352954	2L_11352954_SNP [dm3] 2L_11352954_SNP [dm6]	C	A	3.996e^-8	1.999e^-4	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2L	11359109	2L_11359109_SNP [dm3] 2L_11359109_SNP [dm6]	C	G	3.996e^-8	1.999e^-4	UTR_5_PRIME salr	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19195665	2L_19195665_SNP [dm3] 2L_19195665_SNP [dm6]	G	T	4.113e^-8	2.052e^-4	INTRON drl	regulatory region REDfly_CRMs
2L	16046516	2L_16046516_SNP [dm3] 2L_16046516_SNP [dm6]	C	A	4.158e^-8	2.065e^-4	INTRON BicC & 1 other
2L	19484389	2L_19484389_SNP [dm3] 2L_19484389_SNP [dm6]	A	G	4.162e^-8	2.065e^-4	SYNONYMOUS_CODING CG10195 UPSTREAM CG13084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	725781	2R_725781_SNP [dm3] 2R_4838276_SNP [dm6]	G	C	4.280e^-8	2.118e^-4	INTERGENIC
2L	17115074	2L_17115074_SNP [dm3] 2L_17115074_SNP [dm6]	T	C	4.318e^-8	2.131e^-4	INTERGENIC
2R	7458017	2R_7458017_SNP [dm3] 2R_11570512_SNP [dm6]	A	T	4.331e^-8	2.132e^-4	INTERGENIC
2L	17432178	2L_17432178_SNP [dm3] 2L_17432178_SNP [dm6]	G	A	4.556e^-8	2.237e^-4	INTRON Dif
3R	10120005	3R_10120005_INS [dm3] 3R_14294283_INS [dm6]	A	AA	4.590e^-8	2.247e^-4	INTRON CG12207
2R	12907526	2R_12907526_SNP [dm3] 2R_17020021_SNP [dm6]	A	C	4.618e^-8	2.255e^-4	UPSTREAM Ark & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	10225629	2R_10225629_SNP [dm3] 2R_14338124_SNP [dm6]	T	A	4.630e^-8	2.255e^-4	INTRON Shroom
2L	22745142	2L_22745142_SNP [dm3] 2L_22852410_SNP [dm6]	T	A	4.708e^-8	2.287e^-4	UTR_3_PRIME CG17715 INTRON CG17715
3L	2202743	3L_2202743_SNP [dm3] 3L_2202743_SNP [dm6]	A	T	4.729e^-8	2.291e^-4	INTERGENIC
2L	19487031	2L_19487031_SNP [dm3] 2L_19487031_SNP [dm6]	A	T	4.826e^-8	2.327e^-4	UPSTREAM CG13083 DOWNSTREAM CG13084 INTERGENIC	TF binding site mE1_TFBS_sbb
2R	11174776	2R_11174776_SNP [dm3] 2R_15287271_SNP [dm6]	A	T	4.827e^-8	2.327e^-4	UPSTREAM Trpm INTRON Trpm
2R	7941167	2R_7941167_DEL [dm3] 2R_12053662_DEL [dm6]	ACA	A	4.910e^-8	2.360e^-4	UTR_3_PRIME CG44314 INTRON CG44314	TF binding site mE1_TFBS_cad
2R	19188769	2R_19188769_SNP [dm3] 2R_23301246_SNP [dm6]	G	A	4.935e^-8	2.366e^-4	INTERGENIC
2R	19235786	2R_19235786_SNP [dm3] 2R_23348263_SNP [dm6]	G	A	4.964e^-8	2.374e^-4	UPSTREAM CG3502 DOWNSTREAM CG9863 INTERGENIC
2R	10117926	2R_10117926_SNP [dm3] 2R_14230421_SNP [dm6]	A	C	4.984e^-8	2.377e^-4	UTR_3_PRIME CG8468 DOWNSTREAM Opa1	TF binding site mE1_TFBS_cad
2L	15994246	2L_15994246_SNP [dm3] 2L_15994246_SNP [dm6]	A	T	5.041e^-8	2.398e^-4	INTERGENIC
2R	4199798	2R_4199798_SNP [dm3] 2R_8312293_SNP [dm6]	T	A	5.128e^-8	2.434e^-4	DOWNSTREAM CR44450 INTERGENIC
3R	17892368	3R_17892368_SNP [dm3] 3R_22066646_SNP [dm6]	G	T	5.192e^-8	2.453e^-4	INTRON how
2L	15140926	2L_15140926_SNP [dm3] 2L_15140926_SNP [dm6]	C	T	5.215e^-8	2.453e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	8099803	X_8099803_SNP [dm3] X_8205770_SNP [dm6]	G	T	5.221e^-8	2.453e^-4	INTRON sdt
X	8099804	X_8099804_SNP [dm3] X_8205771_SNP [dm6]	A	T	5.221e^-8	2.453e^-4	INTRON sdt
2L	19487004	2L_19487004_SNP [dm3] 2L_19487004_SNP [dm6]	T	C	5.401e^-8	2.520e^-4	UPSTREAM CG13083 DOWNSTREAM CG13084 INTERGENIC
3L	10901602	3L_10901602_SNP [dm3] 3L_10908502_SNP [dm6]	G	C	5.417e^-8	2.520e^-4	INTERGENIC
X	19623894	X_19623894_SNP [dm3] X_19729861_SNP [dm6]	G	A	5.417e^-8	2.520e^-4	UTR_3_PRIME CG12531
X	20393916	X_20393916_SNP [dm3] X_20522889_SNP [dm6]	T	A	5.417e^-8	2.520e^-4	INTRON Tak1
X	4521824	X_4521824_SNP [dm3] X_4627791_SNP [dm6]	G	A	5.464e^-8	2.535e^-4	DOWNSTREAM peb INTRON CG12184
3R	23155254	3R_23155254_DEL [dm3] 3R_27329532_DEL [dm6]	AGGCCACTAATAATTTTTT...	A	5.599e^-8	2.591e^-4	DOWNSTREAM CG3330 INTERGENIC
3R	17653095	3R_17653095_SNP [dm3] 3R_21827373_SNP [dm6]	C	A	5.621e^-8	2.595e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	12264881	2L_12264881_SNP [dm3] 2L_12264881_SNP [dm6]	T	C	5.681e^-8	2.610e^-4	INTRON aret
2L	12264940	2L_12264940_SNP [dm3] 2L_12264940_SNP [dm6]	C	A	5.681e^-8	2.610e^-4	INTRON aret
2R	7072805	2R_7072805_SNP [dm3] 2R_11185300_SNP [dm6]	T	C	5.759e^-8	2.635e^-4	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
X	5247067	X_5247067_SNP [dm3] X_5353034_SNP [dm6]	A	T	5.765e^-8	2.635e^-4	INTRON SK	TF binding site mE1_TFBS_chinmo
2L	17579241	2L_17579241_SNP [dm3] 2L_17579241_SNP [dm6]	T	C	5.833e^-8	2.657e^-4	UPSTREAM CR45698 INTERGENIC
2L	22081119	2L_22081119_SNP [dm3] 2L_22081119_SNP [dm6]	A	T	5.845e^-8	2.657e^-4	DOWNSTREAM ttm3 INTERGENIC	transposable element FlyBase
2R	9350627	2R_9350627_SNP [dm3] 2R_13463122_SNP [dm6]	G	A	5.855e^-8	2.657e^-4	INTRON arr
2R	10054413	2R_10054413_SNP [dm3] 2R_14166908_SNP [dm6]	G	A	6.029e^-8	2.729e^-4	UTR_3_PRIME CG8323 UPSTREAM CG18327	TF binding site mE1_TFBS_chinmo
2L	19195548	2L_19195548_SNP [dm3] 2L_19195548_SNP [dm6]	G	A	6.231e^-8	2.814e^-4	INTRON drl	regulatory region REDfly_CRMs
2R	20526780	2R_20526780_SNP [dm3] 2R_24639257_SNP [dm6]	A	C	6.257e^-8	2.819e^-4	UPSTREAM CG13594 & 1 other INTERGENIC
2L	13271050	2L_13271050_SNP [dm3] 2L_13271050_SNP [dm6]	T	A	6.322e^-8	2.829e^-4	INTRON CG44085
3L	13730817	3L_13730817_SNP [dm3] 3L_13737717_SNP [dm6]	C	G	6.326e^-8	2.829e^-4	INTRON bru-3
3L	13736644	3L_13736644_SNP [dm3] 3L_13743544_SNP [dm6]	A	G	6.326e^-8	2.829e^-4	INTRON bru-3
2R	4273358	2R_4273358_SNP [dm3] 2R_8385853_SNP [dm6]	A	T	6.435e^-8	2.871e^-4	INTRON pdm3
2L	15999963	2L_15999963_SNP [dm3] 2L_15999963_SNP [dm6]	C	A	6.641e^-8	2.938e^-4	UPSTREAM beat-Ic INTERGENIC
2R	7984848	2R_7984848_SNP [dm3] 2R_12097343_SNP [dm6]	C	T	6.645e^-8	2.938e^-4	INTRON jeb
2R	8004063	2R_8004063_SNP [dm3] 2R_12116558_SNP [dm6]	C	T	6.645e^-8	2.938e^-4	INTRON jeb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9263164	2R_9263164_SNP [dm3] 2R_13375659_SNP [dm6]	A	G	6.661e^-8	2.938e^-4	DOWNSTREAM CG10814 INTERGENIC
2R	10678611	2R_10678611_SNP [dm3] 2R_14791106_SNP [dm6]	C	T	6.665e^-8	2.938e^-4	INTRON kn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13175450	3L_13175450_SNP [dm3] 3L_13182350_SNP [dm6]	A	C	6.759e^-8	2.973e^-4	INTERGENIC
2L	13390424	2L_13390424_SNP [dm3] 2L_13390424_SNP [dm6]	C	G	6.809e^-8	2.988e^-4	SYNONYMOUS_CODING CG7099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	21110186	2L_21110186_SNP [dm3] 2L_21110186_SNP [dm6]	A	G	6.875e^-8	3.008e^-4	INTRON Nhe2	TF binding site BDTNP1_TFBS_dl
2L	16369137	2L_16369137_SNP [dm3] 2L_16369137_SNP [dm6]	C	T	6.887e^-8	3.008e^-4	INTERGENIC
3L	1463687	3L_1463687_INS [dm3] 3L_1463687_INS [dm6]	A	ACACA	6.942e^-8	3.020e^-4	UPSTREAM CR44842 & 1 other INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	23075529	3R_23075529_SNP [dm3] 3R_27249807_SNP [dm6]	G	A	6.948e^-8	3.020e^-4	INTRON CG5987	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18795171	3R_18795171_SNP [dm3] 3R_22969449_SNP [dm6]	G	A	6.998e^-8	3.026e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15275505	2R_15275505_SNP [dm3] 2R_19388000_SNP [dm6]	T	G	7.016e^-8	3.026e^-4	SYNONYMOUS_CODING CG10081
2R	3546161	2R_3546161_SNP [dm3] 2R_7658656_SNP [dm6]	T	A	7.017e^-8	3.026e^-4	UTR_3_PRIME CG30495 DOWNSTREAM CG1339
2R	12849479	2R_12849479_SNP [dm3] 2R_16961974_SNP [dm6]	T	A	7.042e^-8	3.026e^-4	INTERGENIC
X	16808615	X_16808615_SNP [dm3] X_16914582_SNP [dm6]	T	A	7.058e^-8	3.026e^-4	INTRON CG4928
2L	22161507	2L_22161507_SNP [dm3] 2L_22161507_SNP [dm6]	A	G	7.059e^-8	3.026e^-4	DOWNSTREAM CG42748 INTRON CG42748
3L	13721229	3L_13721229_SNP [dm3] 3L_13728129_SNP [dm6]	G	A	7.093e^-8	3.031e^-4	INTRON bru-3
3R	23155240	3R_23155240_DEL [dm3] 3R_27329518_DEL [dm6]	ATTAAAT	A	7.118e^-8	3.031e^-4	DOWNSTREAM CG3330 INTERGENIC
3R	23155253	3R_23155253_SNP [dm3] 3R_27329531_SNP [dm6]	T	A	7.118e^-8	3.031e^-4	DOWNSTREAM CG3330 INTERGENIC
2R	20498540	2R_20498540_SNP [dm3] 2R_24611017_SNP [dm6]	G	T	7.164e^-8	3.036e^-4	SYNONYMOUS_CODING CG4741 UPSTREAM CG3608 DOWNSTREAM CG42360
2R	20498552	2R_20498552_SNP [dm3] 2R_24611029_SNP [dm6]	G	A	7.164e^-8	3.036e^-4	SYNONYMOUS_CODING CG4741 UPSTREAM CG3608 DOWNSTREAM CG42360
3R	18103303	3R_18103303_SNP [dm3] 3R_22277581_SNP [dm6]	A	T	7.460e^-8	3.154e^-4	INTRON SKIP
2R	5293226	2R_5293226_DEL [dm3] 2R_9405721_DEL [dm6]	TT	T	7.561e^-8	3.190e^-4	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19480972	2L_19480972_SNP [dm3] 2L_19480972_SNP [dm6]	T	G	7.602e^-8	3.200e^-4	INTERGENIC
2R	7944819	2R_7944819_SNP [dm3] 2R_12057314_SNP [dm6]	C	G	7.815e^-8	3.275e^-4	DOWNSTREAM CG44314 INTRON Drep-3
2R	9428036	2R_9428036_SNP [dm3] 2R_13540531_SNP [dm6]	A	C	7.832e^-8	3.275e^-4	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	7281999	2R_7281999_SNP [dm3] 2R_11394494_SNP [dm6]	C	G	7.834e^-8	3.275e^-4	DOWNSTREAM tRNA:CR30257 INTRON sprt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11938442	X_11938442_SNP [dm3] X_12044409_SNP [dm6]	T	C	7.886e^-8	3.290e^-4	INTRON CR43960 & 1 other
3R	25582072	3R_25582072_SNP [dm3] 3R_29756350_SNP [dm6]	A	G	8.099e^-8	3.371e^-4	INTRON CR44953
2R	6148881	2R_6148881_SNP [dm3] 2R_10261376_SNP [dm6]	C	T	8.311e^-8	3.452e^-4	DOWNSTREAM CG12911 EXON CR30009
2L	13311958	2L_13311958_SNP [dm3] 2L_13311958_SNP [dm6]	C	T	8.398e^-8	3.480e^-4	INTRON CG43778
2L	11608842	2L_11608842_SNP [dm3] 2L_11608842_SNP [dm6]	G	A	8.448e^-8	3.493e^-4	INTRON kek2	TF binding site mE1_TFBS_inv
3R	18468691	3R_18468691_SNP [dm3] 3R_22642969_SNP [dm6]	A	C	8.542e^-8	3.522e^-4	INTRON CG45058
3R	19754134	3R_19754134_SNP [dm3] 3R_23928412_SNP [dm6]	C	T	8.556e^-8	3.522e^-4	SYNONYMOUS_CODING CG43999 UTR_5_PRIME CG43998 UPSTREAM CG13601 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	13271026	2L_13271026_SNP [dm3] 2L_13271026_SNP [dm6]	T	G	8.678e^-8	3.556e^-4	INTRON CG44085
2L	13271027	2L_13271027_SNP [dm3] 2L_13271027_SNP [dm6]	G	A	8.678e^-8	3.556e^-4	INTRON CG44085
3L	13736656	3L_13736656_SNP [dm3] 3L_13743556_SNP [dm6]	G	T	8.713e^-8	3.563e^-4	INTRON bru-3
3L	7851995	3L_7851995_SNP [dm3] 3L_7858895_SNP [dm6]	C	G	8.760e^-8	3.564e^-4	INTRON Pdp1
2R	15675931	2R_15675931_SNP [dm3] 2R_19788426_SNP [dm6]	G	A	8.770e^-8	3.564e^-4	EXON CR45231
2R	19237668	2R_19237668_DEL [dm3] 2R_23350145_DEL [dm6]	GGCTTTGCCATTCCGG...	G	8.773e^-8	3.564e^-4	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	20515520	2R_20515520_SNP [dm3] 2R_24627997_SNP [dm6]	T	A	8.832e^-8	3.580e^-4	DOWNSTREAM snoRNA:Me18S-G393 INTRON CG13594
2R	6149125	2R_6149125_SNP [dm3] 2R_10261620_SNP [dm6]	G	T	8.905e^-8	3.602e^-4	DOWNSTREAM CG12911 & 1 other EXON CR30009
2R	17997183	2R_17997183_SNP [dm3] 2R_22109678_SNP [dm6]	A	T	9.071e^-8	3.652e^-4	NON_SYNONYMOUS_CODING Vrp1	TF binding site mE1_TFBS_cad
2L	16000028	2L_16000028_SNP [dm3] 2L_16000028_SNP [dm6]	A	G	9.084e^-8	3.652e^-4	UPSTREAM beat-Ic INTERGENIC
2R	4273084	2R_4273084_SNP [dm3] 2R_8385579_SNP [dm6]	G	A	9.088e^-8	3.652e^-4	INTRON pdm3
3R	22985443	3R_22985443_SNP [dm3] 3R_27159721_SNP [dm6]	G	A	9.221e^-8	3.697e^-4	UTR_3_PRIME grass	TF binding site mE1_TFBS_cad
3L	13175442	3L_13175442_SNP [dm3] 3L_13182342_SNP [dm6]	A	G	9.301e^-8	3.721e^-4	INTERGENIC
2L	13360896	2L_13360896_SNP [dm3] 2L_13360896_SNP [dm6]	G	A	9.321e^-8	3.721e^-4	INTRON CG9377
2R	5167373	2R_5167373_SNP [dm3] 2R_9279868_SNP [dm6]	T	C	9.511e^-8	3.789e^-4	INTRON Pkn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	1690108	2R_1690108_SNP [dm3] 2R_5802603_SNP [dm6]	C	G	9.570e^-8	3.805e^-4	INTERGENIC
2L	17509114	2L_17509114_SNP [dm3] 2L_17509114_SNP [dm6]	T	C	9.719e^-8	3.855e^-4	SYNONYMOUS_CODING Dhc36C
X	5000789	X_5000789_SNP [dm3] X_5106756_SNP [dm6]	G	A	9.846e^-8	3.895e^-4	INTRON rg & 1 other
2R	19125378	2R_19125378_SNP [dm3] 2R_23237855_SNP [dm6]	G	T	9.860e^-8	3.895e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13487068	2R_13487068_SNP [dm3] 2R_17599563_SNP [dm6]	C	T	1.052e^-7	4.147e^-4	SYNONYMOUS_CODING CG42649 UPSTREAM CG43920 INTRON lack
2R	7703665	2R_7703665_SNP [dm3] 2R_11816160_SNP [dm6]	T	C	1.055e^-7	4.149e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19637775	2L_19637775_DEL [dm3] 2L_19637775_DEL [dm6]	ATAAATAA	A	1.069e^-7	4.192e^-4	INTRON Lar
2R	19585961	2R_19585961_SNP [dm3] 2R_23698438_SNP [dm6]	T	C	1.070e^-7	4.192e^-4	SYNONYMOUS_CODING mRpL43 UPSTREAM CG30183 DOWNSTREAM CG4091	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	2386725	3L_2386725_SNP [dm3] 3L_2386725_SNP [dm6]	C	T	1.081e^-7	4.215e^-4	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	15014656	2R_15014656_SNP [dm3] 2R_19127151_SNP [dm6]	C	T	1.083e^-7	4.215e^-4	UPSTREAM CG15117 INTRON CG15117
2R	15014657	2R_15014657_SNP [dm3] 2R_19127152_SNP [dm6]	T	C	1.083e^-7	4.215e^-4	UPSTREAM CG15117 INTRON CG15117
2R	20515299	2R_20515299_SNP [dm3] 2R_24627776_SNP [dm6]	T	C	1.101e^-7	4.275e^-4	DOWNSTREAM snoRNA:Me18S-G393 INTRON CG13594
3L	3083893	3L_3083893_SNP [dm3] 3L_3083893_SNP [dm6]	T	G	1.113e^-7	4.313e^-4	INTRON CG11486	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	7942882	2R_7942882_SNP [dm3] 2R_12055377_SNP [dm6]	A	G	1.131e^-7	4.377e^-4	DOWNSTREAM CG44314 INTRON CG44314 & 1 other
2R	7215637	2R_7215637_SNP [dm3] 2R_11328132_SNP [dm6]	C	A	1.143e^-7	4.413e^-4	INTRON sha	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17841647	2R_17841647_DEL [dm3] 2R_21954142_DEL [dm6]	TT	T	1.153e^-7	4.442e^-4	UPSTREAM CR43405 DOWNSTREAM CG13494 INTERGENIC
3L	13756503	3L_13756503_SNP [dm3] 3L_13763403_SNP [dm6]	T	C	1.163e^-7	4.472e^-4	INTRON bru-3
2L	13248283	2L_13248283_SNP [dm3] 2L_13248283_SNP [dm6]	G	A	1.168e^-7	4.479e^-4	INTRON CG16820	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	4545145	2R_4545145_SNP [dm3] 2R_8657640_SNP [dm6]	C	T	1.174e^-7	4.494e^-4	INTRON ptc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
2L	12123437	2L_12123437_SNP [dm3] 2L_12123437_SNP [dm6]	A	G	1.178e^-7	4.502e^-4	INTRON CG17211
2R	5811790	2R_5811790_SNP [dm3] 2R_9924285_SNP [dm6]	C	T	1.191e^-7	4.542e^-4	INTRON Mef2
X	12072095	X_12072095_SNP [dm3] X_12178062_SNP [dm6]	G	A	1.198e^-7	4.558e^-4	SYNONYMOUS_CODING CG1924 INTRON Ten-a
2L	20440120	2L_20440120_SNP [dm3] 2L_20440120_SNP [dm6]	T	C	1.210e^-7	4.595e^-4	INTRON CG31688	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19330818	2R_19330818_SNP [dm3] 2R_23443295_SNP [dm6]	G	A	1.220e^-7	4.622e^-4	UPSTREAM CG43795 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17723768	2R_17723768_SNP [dm3] 2R_21836263_SNP [dm6]	T	A	1.229e^-7	4.635e^-4	SYNONYMOUS_CODING CG4377
3R	18666490	3R_18666490_SNP [dm3] 3R_22840768_SNP [dm6]	T	A	1.230e^-7	4.635e^-4	INTERGENIC
3R	23988617	3R_23988617_SNP [dm3] 3R_28162895_SNP [dm6]	T	C	1.231e^-7	4.635e^-4	INTRON CG34354
2R	2550382	2R_2550382_INS [dm3] 2R_6662877_INS [dm6]	G	GG	1.245e^-7	4.678e^-4	UPSTREAM Dpit47 DOWNSTREAM CR45128 INTRON Adf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	1874679	2R_1874679_SNP [dm3] 2R_5987174_SNP [dm6]	C	T	1.250e^-7	4.690e^-4	INTRON Src42A
2R	9636412	2R_9636412_SNP [dm3] 2R_13748907_SNP [dm6]	T	A	1.269e^-7	4.751e^-4	UTR_3_PRIME fas
2R	17723377	2R_17723377_SNP [dm3] 2R_21835872_SNP [dm6]	T	A	1.279e^-7	4.759e^-4	UPSTREAM CG4363 INTRON CG4377
2R	17723378	2R_17723378_SNP [dm3] 2R_21835873_SNP [dm6]	C	G	1.279e^-7	4.759e^-4	UPSTREAM CG4363 INTRON CG4377
2R	17723380	2R_17723380_SNP [dm3] 2R_21835875_SNP [dm6]	A	G	1.279e^-7	4.759e^-4	UPSTREAM CG4363 INTRON CG4377
2L	16202567	2L_16202567_SNP [dm3] 2L_16202567_SNP [dm6]	C	T	1.286e^-7	4.767e^-4	UPSTREAM CR44736 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	16202569	2L_16202569_SNP [dm3] 2L_16202569_SNP [dm6]	G	A	1.286e^-7	4.767e^-4	UPSTREAM CR44736 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	20235562	2R_20235562_SNP [dm3] 2R_24348039_SNP [dm6]	T	C	1.301e^-7	4.813e^-4	INTRON bs	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	15101473	3R_15101473_SNP [dm3] 3R_19275751_SNP [dm6]	A	G	1.319e^-7	4.868e^-4	INTERGENIC
2L	15125533	2L_15125533_INS [dm3] 2L_15125533_INS [dm6]	A	AA	1.338e^-7	4.928e^-4	INTERGENIC
2R	9427911	2R_9427911_SNP [dm3] 2R_13540406_SNP [dm6]	C	A	1.342e^-7	4.935e^-4	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
2R	7982323	2R_7982323_SNP [dm3] 2R_12094818_SNP [dm6]	G	A	1.346e^-7	4.940e^-4	INTRON jeb
2L	1908355	2L_1908355_SNP [dm3] 2L_1908355_SNP [dm6]	T	C	1.386e^-7	5.074e^-4	INTRON CG7337
X	19681695	X_19681695_SNP [dm3] X_19787662_SNP [dm6]	C	T	1.394e^-7	5.096e^-4	INTRON CR44885	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8917161	2R_8917161_SNP [dm3] 2R_13029656_SNP [dm6]	T	C	1.399e^-7	5.102e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7690353	2R_7690353_SNP [dm3] 2R_11802848_SNP [dm6]	G	T	1.408e^-7	5.128e^-4	INTRON ths
3L	3915368	3L_3915368_SNP [dm3] 3L_3915368_SNP [dm6]	T	C	1.447e^-7	5.239e^-4	INTRON Eip63F-1
3L	3916336	3L_3916336_SNP [dm3] 3L_3916336_SNP [dm6]	C	T	1.447e^-7	5.239e^-4	INTRON Eip63F-1	TF binding site mE1_TFBS_cad
2R	20347902	2R_20347902_SNP [dm3] 2R_24460379_SNP [dm6]	C	A	1.450e^-7	5.239e^-4	INTRON CG13579
2R	20349199	2R_20349199_SNP [dm3] 2R_24461676_SNP [dm6]	C	T	1.450e^-7	5.239e^-4	INTRON CG13579
2R	20480100	2R_20480100_SNP [dm3] 2R_24592577_SNP [dm6]	G	A	1.483e^-7	5.348e^-4	UTR_3_PRIME pio INTRON pio
2R	9022862	2R_9022862_SNP [dm3] 2R_13135357_SNP [dm6]	C	A	1.488e^-7	5.353e^-4	SYNONYMOUS_CODING Cap-G	TF binding site mE1_TFBS_sens
X	9767093	X_9767093_SNP [dm3] X_9873060_SNP [dm6]	G	C	1.490e^-7	5.353e^-4	UTR_3_PRIME CG32695 DOWNSTREAM CG32695
2R	20229155	2R_20229155_SNP [dm3] 2R_24341632_SNP [dm6]	T	C	1.500e^-7	5.379e^-4	INTERGENIC	TF binding site mE1_TFBS_cad
X	12072101	X_12072101_SNP [dm3] X_12178068_SNP [dm6]	C	T	1.512e^-7	5.408e^-4	SYNONYMOUS_CODING CG1924 INTRON Ten-a
2L	16000019	2L_16000019_SNP [dm3] 2L_16000019_SNP [dm6]	T	C	1.518e^-7	5.412e^-4	UPSTREAM beat-Ic INTERGENIC
X	12072032	X_12072032_SNP [dm3] X_12177999_SNP [dm6]	A	C	1.518e^-7	5.412e^-4	NON_SYNONYMOUS_CODING CG1924 INTRON Ten-a
3L	5841056	3L_5841056_SNP [dm3] 3L_5847956_SNP [dm6]	T	C	1.527e^-7	5.428e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA
3R	10423360	3R_10423360_SNP [dm3] 3R_14597638_SNP [dm6]	C	G	1.529e^-7	5.428e^-4	INTRON stumps	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	3308087	X_3308087_SNP [dm3] X_3414054_SNP [dm6]	C	T	1.537e^-7	5.448e^-4	INTRON CR44999 & 1 other
3L	22537904	3L_22537904_SNP [dm3] 3L_22544804_SNP [dm6]	G	A	1.557e^-7	5.506e^-4	INTERGENIC
2R	9338009	2R_9338009_SNP [dm3] 2R_13450504_SNP [dm6]	T	A	1.560e^-7	5.506e^-4	UPSTREAM cbs & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	12829969	2L_12829969_SNP [dm3] 2L_12829969_SNP [dm6]	C	A	1.579e^-7	5.563e^-4	INTERGENIC
2R	17740265	2R_17740265_SNP [dm3] 2R_21852760_SNP [dm6]	G	A	1.596e^-7	5.613e^-4	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17723437	2R_17723437_SNP [dm3] 2R_21835932_SNP [dm6]	T	C	1.609e^-7	5.646e^-4	SYNONYMOUS_CODING CG4377 UPSTREAM CG4363
3L	10685190	3L_10685190_SNP [dm3] 3L_10692090_SNP [dm6]	G	A	1.627e^-7	5.701e^-4	UTR_3_PRIME CG11811 DOWNSTREAM CG33493
X	4556446	X_4556446_SNP [dm3] X_4662413_SNP [dm6]	G	A	1.647e^-7	5.759e^-4	INTRON CG3009
2L	22557642	2L_22557642_SNP [dm3] 2L_22664910_SNP [dm6]	A	G	1.654e^-7	5.772e^-4	INTRON CG40006
X	20316681	X_20316681_SNP [dm3] X_20445654_SNP [dm6]	C	T	1.662e^-7	5.785e^-4	UPSTREAM CG42578 DOWNSTREAM CG1695 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26752896	3R_26752896_SNP [dm3] 3R_30927174_SNP [dm6]	A	G	1.666e^-7	5.785e^-4	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	22856769	3L_22856769_SNP [dm3] 3L_22863669_SNP [dm6]	C	A	1.667e^-7	5.785e^-4	UPSTREAM CG33169 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_cad
2L	11308709	2L_11308709_SNP [dm3] 2L_11308709_SNP [dm6]	T	C	1.677e^-7	5.809e^-4	DOWNSTREAM CR43721 INTERGENIC
2L	14642617	2L_14642617_SNP [dm3] 2L_14642617_SNP [dm6]	G	A	1.690e^-7	5.845e^-4	INTRON osp
3R	13912154	3R_13912154_SNP [dm3] 3R_18086432_SNP [dm6]	C	T	1.695e^-7	5.851e^-4	INTERGENIC
2R	8187578	2R_8187578_SNP [dm3] 2R_12300073_SNP [dm6]	G	A	1.707e^-7	5.882e^-4	SYNONYMOUS_CODING CG8850 UTR_3_PRIME CG42700	TF binding site mE1_TFBS_cad
3R	23244837	3R_23244837_DEL [dm3] 3R_27419115_DEL [dm6]	ACTCATATGGCAA...	T	1.724e^-7	5.930e^-4	INTRON side	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	7943956	2R_7943956_SNP [dm3] 2R_12056451_SNP [dm6]	G	A	1.734e^-7	5.951e^-4	UTR_3_PRIME CG44314 INTRON Drep-3
3L	7457055	3L_7457055_SNP [dm3] 3L_7463955_SNP [dm6]	C	T	1.742e^-7	5.969e^-4	INTERGENIC
2R	13486845	2R_13486845_SNP [dm3] 2R_17599340_SNP [dm6]	G	A	1.746e^-7	5.971e^-4	UPSTREAM CG43920 DOWNSTREAM CG42649 INTRON lack
2R	11468897	2R_11468897_SNP [dm3] 2R_15581392_SNP [dm6]	C	T	1.755e^-7	5.990e^-4	INTERGENIC
2R	7708171	2R_7708171_SNP [dm3] 2R_11820666_SNP [dm6]	G	A	1.793e^-7	6.086e^-4	INTERGENIC
2R	8911953	2R_8911953_SNP [dm3] 2R_13024448_SNP [dm6]	A	T	1.793e^-7	6.086e^-4	INTERGENIC
2R	8912719	2R_8912719_SNP [dm3] 2R_13025214_SNP [dm6]	C	T	1.793e^-7	6.086e^-4	INTERGENIC
3L	3348952	3L_3348952_SNP [dm3] 3L_3348952_SNP [dm6]	C	T	1.827e^-7	6.192e^-4	INTRON kst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20484185	2L_20484185_SNP [dm3] 2L_20484185_SNP [dm6]	A	C	1.840e^-7	6.214e^-4	INTRON CR44980
3L	3915075	3L_3915075_DEL [dm3] 3L_3915075_DEL [dm6]	ACTTAAAAGAAGGCCCAATT...	A	1.840e^-7	6.214e^-4	INTRON Eip63F-1
X	10286224	X_10286224_SNP [dm3] X_10392191_SNP [dm6]	A	T	1.858e^-7	6.261e^-4	INTRON flw
2L	11695122	2L_11695122_SNP [dm3] 2L_11695122_SNP [dm6]	T	A	1.909e^-7	6.421e^-4	SYNONYMOUS_CODING CG4988
2R	20480313	2R_20480313_SNP [dm3] 2R_24592790_SNP [dm6]	C	A	1.915e^-7	6.431e^-4	DOWNSTREAM pio INTRON pio
2L	22520536	2L_22520536_SNP [dm3] 2L_22627804_SNP [dm6]	A	G	1.934e^-7	6.483e^-4	INTRON CG40006
2R	8921973	2R_8921973_SNP [dm3] 2R_13034468_SNP [dm6]	A	G	1.999e^-7	6.691e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	17571248	2L_17571248_SNP [dm3] 2L_17571248_SNP [dm6]	T	C	2.022e^-7	6.740e^-4	INTERGENIC
2L	17571270	2L_17571270_SNP [dm3] 2L_17571270_SNP [dm6]	C	T	2.022e^-7	6.740e^-4	INTERGENIC
3R	22215973	3R_22215973_SNP [dm3] 3R_26390251_SNP [dm6]	C	G	2.084e^-7	6.935e^-4	INTERGENIC
2R	15947084	2R_15947084_SNP [dm3] 2R_20059579_SNP [dm6]	T	C	2.101e^-7	6.981e^-4	DOWNSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17550231	2L_17550231_SNP [dm3] 2L_17550231_SNP [dm6]	C	G	2.145e^-7	7.113e^-4	INTERGENIC
X	10286162	X_10286162_SNP [dm3] X_10392129_SNP [dm6]	T	C	2.170e^-7	7.185e^-4	INTRON flw
2R	8921005	2R_8921005_SNP [dm3] 2R_13033500_SNP [dm6]	T	A	2.179e^-7	7.194e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	15723933	3L_15723933_INS [dm3] 3L_15730833_INS [dm6]	C	CGGGTTC	2.188e^-7	7.194e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3307496	3L_3307496_DEL [dm3] 3L_3307496_DEL [dm6]	AA	A	2.200e^-7	7.194e^-4	UPSTREAM ZnT63C INTRON ZnT63C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3307546	3L_3307546_SNP [dm3] 3L_3307546_SNP [dm6]	A	G	2.200e^-7	7.194e^-4	UPSTREAM ZnT63C INTRON ZnT63C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3307559	3L_3307559_SNP [dm3] 3L_3307559_SNP [dm6]	T	A	2.200e^-7	7.194e^-4	UPSTREAM ZnT63C INTRON ZnT63C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3307581	3L_3307581_SNP [dm3] 3L_3307581_SNP [dm6]	T	A	2.200e^-7	7.194e^-4	UPSTREAM ZnT63C INTRON ZnT63C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3307818	3L_3307818_SNP [dm3] 3L_3307818_SNP [dm6]	C	T	2.200e^-7	7.194e^-4	UPSTREAM ZnT63C INTRON ZnT63C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6969470	2R_6969470_SNP [dm3] 2R_11081965_SNP [dm6]	C	T	2.204e^-7	7.194e^-4	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13680108	3L_13680108_SNP [dm3] 3L_13687008_SNP [dm6]	G	A	2.217e^-7	7.222e^-4	INTRON bru-3
2L	13393245	2L_13393245_SNP [dm3] 2L_13393245_SNP [dm6]	T	A	2.231e^-7	7.257e^-4	SYNONYMOUS_CODING CG7099 DOWNSTREAM RpL24	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26074742	3R_26074742_SNP [dm3] 3R_30249020_SNP [dm6]	G	A	2.241e^-7	7.276e^-4	UPSTREAM tRNA:CR31383 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	6849561	2R_6849561_SNP [dm3] 2R_10962056_SNP [dm6]	G	C	2.254e^-7	7.306e^-4	INTERGENIC
2R	9643895	2R_9643895_SNP [dm3] 2R_13756390_SNP [dm6]	C	T	2.267e^-7	7.336e^-4	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_cad
2R	20299289	2R_20299289_SNP [dm3] 2R_24411766_SNP [dm6]	T	A	2.286e^-7	7.377e^-4	UPSTREAM CG45069 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	15032981	2L_15032981_SNP [dm3] 2L_15032981_SNP [dm6]	T	A	2.288e^-7	7.377e^-4	UTR_3_PRIME GABA-B-R1
2R	10674628	2R_10674628_SNP [dm3] 2R_14787123_SNP [dm6]	C	A	2.334e^-7	7.514e^-4	INTRON kn	TF binding site BDTNP1_TFBS_dl
2R	15593576	2R_15593576_SNP [dm3] 2R_19706071_SNP [dm6]	G	T	2.350e^-7	7.539e^-4	INTERGENIC	regulatory region REDfly_CRMs
3L	7873719	3L_7873719_INS [dm3] 3L_7880619_INS [dm6]	G	GGTT	2.352e^-7	7.539e^-4	INTRON CG32365
X	19681672	X_19681672_DEL [dm3] X_19787639_DEL [dm6]	AA	A	2.354e^-7	7.539e^-4	INTRON CR44885	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	12478281	2L_12478281_SNP [dm3] 2L_12478281_SNP [dm6]	T	A	2.370e^-7	7.575e^-4	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7956961	2L_7956961_SNP [dm3] 2L_7956961_SNP [dm6]	C	G	2.401e^-7	7.663e^-4	INTRON Snoo
2R	15552812	2R_15552812_SNP [dm3] 2R_19665307_SNP [dm6]	A	G	2.419e^-7	7.705e^-4	UTR_3_PRIME hrg INTRON hrg	TF binding site BDTNP1_TFBS_dl
2L	10964819	2L_10964819_SNP [dm3] 2L_10964819_SNP [dm6]	G	C	2.427e^-7	7.705e^-4	UPSTREAM dpr2 DOWNSTREAM CG33129 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
2L	10964820	2L_10964820_SNP [dm3] 2L_10964820_SNP [dm6]	G	C	2.427e^-7	7.705e^-4	UPSTREAM dpr2 DOWNSTREAM CG33129 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
3R	19932856	3R_19932856_SNP [dm3] 3R_24107134_SNP [dm6]	G	C	2.480e^-7	7.862e^-4	SYNONYMOUS_CODING 4EHP UPSTREAM CG10694	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13024917	2R_13024917_SNP [dm3] 2R_17137412_SNP [dm6]	C	T	2.518e^-7	7.952e^-4	NON_SYNONYMOUS_CODING CG11395 SPLICE_SITE_REGION CG11395 DOWNSTREAM Gbp
2R	13024935	2R_13024935_SNP [dm3] 2R_17137430_SNP [dm6]	A	T	2.518e^-7	7.952e^-4	DOWNSTREAM Gbp INTRON CG11395
2L	14038411	2L_14038411_SNP [dm3] 2L_14038411_SNP [dm6]	T	G	2.554e^-7	8.054e^-4	UPSTREAM CR45284 INTERGENIC	TF binding site mE1_TFBS_cad
3R	25240201	3R_25240201_SNP [dm3] 3R_29414479_SNP [dm6]	T	A	2.564e^-7	8.070e^-4	INTRON Ptp99A
2L	13400843	2L_13400843_SNP [dm3] 2L_13400843_SNP [dm6]	C	T	2.582e^-7	8.116e^-4	INTRON CG7110
2R	1568299	2R_1568299_SNP [dm3] 2R_5680794_SNP [dm6]	T	G	2.626e^-7	8.239e^-4	INTRON scaf	TF binding site mE1_TFBS_cad
2R	7715873	2R_7715873_SNP [dm3] 2R_11828368_SNP [dm6]	T	A	2.634e^-7	8.248e^-4	SYNONYMOUS_CODING Sobp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	784985	2R_784985_SNP [dm3] 2R_4897480_SNP [dm6]	C	A	2.638e^-7	8.248e^-4	INTRON CG44102	transposable element FlyBase
X	19727654	X_19727654_SNP [dm3] X_19833621_SNP [dm6]	T	A	2.762e^-7	8.622e^-4	SYNONYMOUS_CODING pico	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9337061	2R_9337061_SNP [dm3] 2R_13449556_SNP [dm6]	G	A	2.816e^-7	8.776e^-4	UPSTREAM cnn INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	784986	2R_784986_SNP [dm3] 2R_4897481_SNP [dm6]	C	A	2.833e^-7	8.815e^-4	INTRON CG44102	transposable element FlyBase
2R	12068813	2R_12068813_SNP [dm3] 2R_16181308_SNP [dm6]	G	A	2.849e^-7	8.848e^-4	UTR_5_PRIME Lis-1 INTRON Lis-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5040081	X_5040081_SNP [dm3] X_5146048_SNP [dm6]	T	C	2.855e^-7	8.854e^-4	INTRON rg & 1 other
2R	8912705	2R_8912705_SNP [dm3] 2R_13025200_SNP [dm6]	C	A	2.869e^-7	8.882e^-4	INTERGENIC
2R	9656516	2R_9656516_SNP [dm3] 2R_13769011_SNP [dm6]	C	A	2.877e^-7	8.890e^-4	UPSTREAM Cpr50Ca INTERGENIC
3L	17732723	3L_17732723_SNP [dm3] 3L_17739623_SNP [dm6]	C	T	2.883e^-7	8.895e^-4	UPSTREAM CG7460 INTRON Ccn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17565289	2L_17565289_SNP [dm3] 2L_17565289_SNP [dm6]	C	T	2.907e^-7	8.951e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13395607	2L_13395607_SNP [dm3] 2L_13395607_SNP [dm6]	T	A	2.911e^-7	8.951e^-4	SYNONYMOUS_CODING CG16957 UPSTREAM RpL24 DOWNSTREAM CG10859	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
2L	22165990	2L_22165990_SNP [dm3] 2L_22165990_SNP [dm6]	A	T	2.924e^-7	8.977e^-4	UTR_3_PRIME CG42748 & 1 other
2R	5111644	2R_5111644_SNP [dm3] 2R_9224139_SNP [dm6]	T	C	2.950e^-7	9.034e^-4	INTERGENIC
2L	12611702	2L_12611702_SNP [dm3] 2L_12611702_SNP [dm6]	C	G	2.967e^-7	9.034e^-4	UPSTREAM Ref2 INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	20470730	2L_20470730_SNP [dm3] 2L_20470730_SNP [dm6]	A	T	2.967e^-7	9.034e^-4	INTRON CR44980
2L	20480194	2L_20480194_SNP [dm3] 2L_20480194_SNP [dm6]	C	A	2.967e^-7	9.034e^-4	INTRON CR44980	TF binding site BDTNP1_TFBS_twi
2L	20480353	2L_20480353_SNP [dm3] 2L_20480353_SNP [dm6]	G	A	2.967e^-7	9.034e^-4	INTRON CR44980	TF binding site BDTNP1_TFBS_twi
2L	11906903	2L_11906903_SNP [dm3] 2L_11906903_SNP [dm6]	A	T	2.987e^-7	9.079e^-4	INTRON Pde1c
2L	19485564	2L_19485564_SNP [dm3] 2L_19485564_SNP [dm6]	T	C	2.995e^-7	9.090e^-4	NON_SYNONYMOUS_CODING CG13084 UPSTREAM CG10195	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	21925062	2L_21925062_SNP [dm3] 2L_21925062_SNP [dm6]	T	G	3.049e^-7	9.238e^-4	INTERGENIC	transposable element FlyBase
2R	12103662	2R_12103662_SNP [dm3] 2R_16216157_SNP [dm6]	C	T	3.063e^-7	9.265e^-4	INTRON mrj
2L	20550492	2L_20550492_SNP [dm3] 2L_20550492_SNP [dm6]	T	C	3.138e^-7	9.473e^-4	INTERGENIC
2L	10964824	2L_10964824_INS [dm3] 2L_10964824_INS [dm6]	G	GGCAA	3.153e^-7	9.473e^-4	UPSTREAM dpr2 DOWNSTREAM CG33129 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
2L	13916985	2L_13916985_SNP [dm3] 2L_13916985_SNP [dm6]	G	A	3.162e^-7	9.473e^-4	NON_SYNONYMOUS_CODING Ance-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13917005	2L_13917005_SNP [dm3] 2L_13917005_SNP [dm6]	A	G	3.162e^-7	9.473e^-4	SYNONYMOUS_CODING Ance-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13917326	2L_13917326_SNP [dm3] 2L_13917326_SNP [dm6]	G	A	3.162e^-7	9.473e^-4	SYNONYMOUS_CODING Ance-3	TF binding site BDTNP1_TFBS_twi
2L	13917597	2L_13917597_SNP [dm3] 2L_13917597_SNP [dm6]	C	T	3.162e^-7	9.473e^-4	NON_SYNONYMOUS_CODING Ance-3	TF binding site BDTNP1_TFBS_twi
2L	14604075	2L_14604075_SNP [dm3] 2L_14604075_SNP [dm6]	A	T	3.206e^-7	9.575e^-4	NON_SYNONYMOUS_CODING osp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14604166	2L_14604166_SNP [dm3] 2L_14604166_SNP [dm6]	G	A	3.206e^-7	9.575e^-4	SYNONYMOUS_CODING osp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13024981	2R_13024981_DEL [dm3] 2R_17137476_DEL [dm6]	TT	C	3.222e^-7	9.608e^-4	DOWNSTREAM Gbp INTRON CG11395
2R	19773732	2R_19773732_SNP [dm3] 2R_23886209_SNP [dm6]	A	C	3.264e^-7	9.694e^-4	UPSTREAM CG5597 INTERGENIC
2R	19773733	2R_19773733_SNP [dm3] 2R_23886210_SNP [dm6]	C	T	3.264e^-7	9.694e^-4	UPSTREAM CG5597 INTERGENIC
2L	13139003	2L_13139003_SNP [dm3] 2L_13139003_SNP [dm6]	C	A	3.267e^-7	9.694e^-4	INTERGENIC
3L	9814459	3L_9814459_SNP [dm3] 3L_9821359_SNP [dm6]	G	A	3.297e^-7	9.754e^-4	UPSTREAM CG43897 INTRON CG43897
2L	18471643	2L_18471643_SNP [dm3] 2L_18471643_SNP [dm6]	A	T	3.300e^-7	9.754e^-4	UPSTREAM let-7 & 1 other DOWNSTREAM mir-100 EXON let-7-C
2R	10756163	2R_10756163_SNP [dm3] 2R_14868658_SNP [dm6]	G	A	3.303e^-7	9.754e^-4	SYNONYMOUS_CODING Inr-a DOWNSTREAM Inr-a	TF binding site mE1_TFBS_cad
3R	15102356	3R_15102356_SNP [dm3] 3R_19276634_SNP [dm6]	T	C	3.361e^-7	9.909e^-4	INTERGENIC
2R	11174669	2R_11174669_SNP [dm3] 2R_15287164_SNP [dm6]	C	T	3.411e^-7	0.001	UPSTREAM Trpm INTRON Trpm
2R	784982	2R_784982_INS [dm3] 2R_4897477_INS [dm6]	T	TGGGG	3.440e^-7	0.001	INTRON CG44102	transposable element FlyBase
2L	17512949	2L_17512949_SNP [dm3] 2L_17512949_SNP [dm6]	C	A	3.474e^-7	0.001	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_chinmo
2L	14038634	2L_14038634_SNP [dm3] 2L_14038634_SNP [dm6]	C	T	3.477e^-7	0.001	UPSTREAM CR45284 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	22139117	2L_22139117_SNP [dm3] 2L_22139117_SNP [dm6]	A	G	3.546e^-7	0.001	INTRON CG42748	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	20516304	2R_20516304_SNP [dm3] 2R_24628781_SNP [dm6]	A	G	3.557e^-7	0.001	UPSTREAM snoRNA:Me18S-G393 INTRON CG13594
2L	20476552	2L_20476552_SNP [dm3] 2L_20476552_SNP [dm6]	G	C	3.568e^-7	0.001	DOWNSTREAM CR43234 INTRON CR44980	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20476553	2L_20476553_SNP [dm3] 2L_20476553_SNP [dm6]	A	C	3.568e^-7	0.001	DOWNSTREAM CR43234 INTRON CR44980	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11906988	2L_11906988_SNP [dm3] 2L_11906988_SNP [dm6]	G	T	3.587e^-7	0.001	INTRON Pde1c
2L	15736680	2L_15736680_SNP [dm3] 2L_15736680_SNP [dm6]	C	A	3.649e^-7	0.001	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13931971	2L_13931971_SNP [dm3] 2L_13931971_SNP [dm6]	T	C	3.653e^-7	0.001	UPSTREAM CG42711 DOWNSTREAM CG16885 INTRON Ance-3
3R	19084680	3R_19084680_SNP [dm3] 3R_23258958_SNP [dm6]	C	T	3.665e^-7	0.001	NON_SYNONYMOUS_CODING CG13827 UPSTREAM wda INTRON CG13827	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	19482161	2L_19482161_SNP [dm3] 2L_19482161_SNP [dm6]	G	T	3.677e^-7	0.001	DOWNSTREAM CG10195 INTERGENIC
2L	20550934	2L_20550934_SNP [dm3] 2L_20550934_SNP [dm6]	A	C	3.689e^-7	0.001	INTERGENIC
3L	16156405	3L_16156405_SNP [dm3] 3L_16163305_SNP [dm6]	G	A	3.715e^-7	0.001	INTRON CG5151
2L	14008772	2L_14008772_SNP [dm3] 2L_14008772_SNP [dm6]	T	C	3.724e^-7	0.001	UTR_3_PRIME CG42692
2L	16436121	2L_16436121_SNP [dm3] 2L_16436121_SNP [dm6]	A	G	3.740e^-7	0.001	INTRON CG5888
2L	19485845	2L_19485845_SNP [dm3] 2L_19485845_SNP [dm6]	C	A	3.769e^-7	0.001	SYNONYMOUS_CODING CG13084	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6148965	2R_6148965_SNP [dm3] 2R_10261460_SNP [dm6]	A	T	3.799e^-7	0.001	DOWNSTREAM CG12911 EXON CR30009
2L	13915278	2L_13915278_SNP [dm3] 2L_13915278_SNP [dm6]	A	C	3.866e^-7	0.001	INTRON Ance-3	TF binding site BDTNP1_TFBS_twi
2L	20473399	2L_20473399_SNP [dm3] 2L_20473399_SNP [dm6]	G	T	3.881e^-7	0.001	UPSTREAM CG43233 INTRON CR44980
2L	21924925	2L_21924925_SNP [dm3] 2L_21924925_SNP [dm6]	T	C	3.936e^-7	0.001	INTERGENIC
2L	13932095	2L_13932095_SNP [dm3] 2L_13932095_SNP [dm6]	T	C	3.972e^-7	0.001	UPSTREAM CG42711 DOWNSTREAM CG16885 INTRON Ance-3
3L	13694781	3L_13694781_SNP [dm3] 3L_13701681_SNP [dm6]	C	T	3.976e^-7	0.001	INTRON bru-3
2L	13932139	2L_13932139_SNP [dm3] 2L_13932139_SNP [dm6]	T	A	4.022e^-7	0.001	UPSTREAM CG42711 DOWNSTREAM CG16885 INTRON Ance-3
2R	9014905	2R_9014905_SNP [dm3] 2R_13127400_SNP [dm6]	T	C	4.030e^-7	0.001	DOWNSTREAM CG3955 INTERGENIC
2R	10564484	2R_10564484_SNP [dm3] 2R_14676979_SNP [dm6]	A	G	4.060e^-7	0.001	SYNONYMOUS_CODING CG30480 UTR_5_PRIME CG30479 INTRON mspo
2L	14595438	2L_14595438_SNP [dm3] 2L_14595438_SNP [dm6]	C	A	4.161e^-7	0.001	INTERGENIC
2L	13379457	2L_13379457_SNP [dm3] 2L_13379457_SNP [dm6]	G	T	4.166e^-7	0.001	UPSTREAM CG9302 INTRON beta'COP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	20505356	2L_20505356_SNP [dm3] 2L_20505356_SNP [dm6]	C	T	4.202e^-7	0.001	INTERGENIC
2L	14603332	2L_14603332_SNP [dm3] 2L_14603332_SNP [dm6]	C	T	4.249e^-7	0.001	SYNONYMOUS_CODING osp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
2L	925385	2L_925385_SNP [dm3] 2L_925385_SNP [dm6]	C	A	4.318e^-7	0.001	INTRON CG4341	TF binding site mE1_TFBS_chinmo
2R	784976	2R_784976_MNP [dm3] 2R_4897471_MNP [dm6]	AAA	TGC	4.409e^-7	0.001	INTRON CG44102	transposable element FlyBase
2R	10715027	2R_10715027_SNP [dm3] 2R_14827522_SNP [dm6]	G	T	4.432e^-7	0.001	INTERGENIC
2L	14227946	2L_14227946_SNP [dm3] 2L_14227946_SNP [dm6]	A	T	4.465e^-7	0.001	INTRON Dyrk2
2R	19622497	2R_19622497_INS [dm3] 2R_23734974_INS [dm6]	T	TATT	4.472e^-7	0.001	UTR_3_PRIME egl UPSTREAM mir-4979 DOWNSTREAM Sesn
X	20822147	X_20822147_SNP [dm3] X_20951120_SNP [dm6]	C	T	4.481e^-7	0.001	INTERGENIC
2L	19525232	2L_19525232_SNP [dm3] 2L_19525232_SNP [dm6]	G	A	4.502e^-7	0.001	SYNONYMOUS_CODING CG10132 DOWNSTREAM CG10166	TF binding site mE1_TFBS_cad
2L	14044026	2L_14044026_SNP [dm3] 2L_14044026_SNP [dm6]	T	C	4.530e^-7	0.001	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12212126	2L_12212126_SNP [dm3] 2L_12212126_SNP [dm6]	G	A	4.547e^-7	0.001	INTRON aret
2L	17856929	2L_17856929_DEL [dm3] 2L_17856929_DEL [dm6]	AA	A	4.554e^-7	0.001	INTRON CadN2
2R	4572342	2R_4572342_SNP [dm3] 2R_8684837_SNP [dm6]	C	T	4.560e^-7	0.001	INTERGENIC	TF binding site mE1_TFBS_inv
2R	4572597	2R_4572597_SNP [dm3] 2R_8685092_SNP [dm6]	A	G	4.560e^-7	0.001	INTERGENIC	TF binding site mE1_TFBS_inv
2L	20480342	2L_20480342_SNP [dm3] 2L_20480342_SNP [dm6]	C	A	4.617e^-7	0.001	INTRON CR44980	TF binding site BDTNP1_TFBS_twi
2R	2796757	2R_2796757_SNP [dm3] 2R_6909252_SNP [dm6]	G	A	4.622e^-7	0.001	INTRON CG30158
2L	19482143	2L_19482143_SNP [dm3] 2L_19482143_SNP [dm6]	T	A	4.677e^-7	0.001	DOWNSTREAM CG10195 INTERGENIC
2L	11613454	2L_11613454_SNP [dm3] 2L_11613454_SNP [dm6]	G	C	4.708e^-7	0.001	INTRON kek2
2L	20480347	2L_20480347_SNP [dm3] 2L_20480347_SNP [dm6]	G	A	4.719e^-7	0.001	INTRON CR44980	TF binding site BDTNP1_TFBS_twi
3R	17091215	3R_17091215_SNP [dm3] 3R_21265493_SNP [dm6]	A	G	4.784e^-7	0.001	DOWNSTREAM Rab1 & 1 other INTERGENIC
2L	20560998	2L_20560998_SNP [dm3] 2L_20560998_SNP [dm6]	G	C	4.832e^-7	0.001	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5051823	2R_5051823_SNP [dm3] 2R_9164318_SNP [dm6]	T	C	4.871e^-7	0.001	INTRON CG8046	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2636978	2R_2636978_DEL [dm3] 2R_6749473_DEL [dm6]	CTC	C	4.877e^-7	0.001	UPSTREAM Eb1 DOWNSTREAM CG3267 INTRON Eb1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13309499	2L_13309499_SNP [dm3] 2L_13309499_SNP [dm6]	G	A	4.907e^-7	0.001	SYNONYMOUS_CODING CG43778 UTR_5_PRIME CG43778	TF binding site mE1_TFBS_chinmo
2R	8407543	2R_8407543_SNP [dm3] 2R_12520038_SNP [dm6]	G	A	4.989e^-7	0.001	SYNONYMOUS_CODING CG8569	TF binding site mE1_TFBS_cad
2R	11327618	2R_11327618_SNP [dm3] 2R_15440113_SNP [dm6]	A	G	4.996e^-7	0.001	INTRON CG43729
3R	13911307	3R_13911307_SNP [dm3] 3R_18085585_SNP [dm6]	C	A	5.023e^-7	0.001	INTERGENIC
3R	17091227	3R_17091227_SNP [dm3] 3R_21265505_SNP [dm6]	C	T	5.066e^-7	0.001	DOWNSTREAM Rab1 & 1 other INTERGENIC
2L	11200963	2L_11200963_SNP [dm3] 2L_11200963_SNP [dm6]	T	G	5.107e^-7	0.001	INTRON Ca-beta
2R	8919390	2R_8919390_SNP [dm3] 2R_13031885_SNP [dm6]	A	G	5.132e^-7	0.001	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7690368	2R_7690368_SNP [dm3] 2R_11802863_SNP [dm6]	T	C	5.252e^-7	0.001	INTRON ths
2R	20522966	2R_20522966_SNP [dm3] 2R_24635443_SNP [dm6]	A	T	5.269e^-7	0.001	INTRON CG13594
3L	13055601	3L_13055601_SNP [dm3] 3L_13062501_SNP [dm6]	G	A	5.292e^-7	0.001	UPSTREAM CG34429 INTRON CG34428	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18460867	3R_18460867_SNP [dm3] 3R_22635145_SNP [dm6]	C	T	5.351e^-7	0.001	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	7845372	3L_7845372_SNP [dm3] 3L_7852272_SNP [dm6]	A	T	5.445e^-7	0.001	INTRON Pdp1
3R	26847312	3R_26847312_SNP [dm3] 3R_31021590_SNP [dm6]	C	A	5.518e^-7	0.001	INTERGENIC
2L	11693762	2L_11693762_SNP [dm3] 2L_11693762_SNP [dm6]	G	A	5.574e^-7	0.001	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11693767	2L_11693767_SNP [dm3] 2L_11693767_SNP [dm6]	A	G	5.574e^-7	0.001	INTERGENIC	TF binding site mE1_TFBS_inv
2L	14577909	2L_14577909_SNP [dm3] 2L_14577909_SNP [dm6]	T	C	5.614e^-7	0.001	DOWNSTREAM CR44856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	4415025	2R_4415025_SNP [dm3] 2R_8527520_SNP [dm6]	A	T	5.618e^-7	0.001	INTRON mtt
2L	12276373	2L_12276373_SNP [dm3] 2L_12276373_SNP [dm6]	A	G	5.652e^-7	0.002	INTRON aret
2L	20551689	2L_20551689_SNP [dm3] 2L_20551689_SNP [dm6]	T	A	5.690e^-7	0.002	INTERGENIC
2L	20553324	2L_20553324_DEL [dm3] 2L_20553324_DEL [dm6]	AGTAGGATTCAAA...	A	5.690e^-7	0.002	INTERGENIC
3R	19833734	3R_19833734_SNP [dm3] 3R_24008012_SNP [dm6]	G	C	5.704e^-7	0.002	INTRON KrT95D
2R	16477900	2R_16477900_SNP [dm3] 2R_20590395_SNP [dm6]	C	A	5.761e^-7	0.002	INTRON bl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13359790	2L_13359790_SNP [dm3] 2L_13359790_SNP [dm6]	C	T	5.769e^-7	0.002	DOWNSTREAM CG9377 INTERGENIC	TF binding site mE1_TFBS_cad
2R	15273307	2R_15273307_SNP [dm3] 2R_19385802_SNP [dm6]	A	G	5.772e^-7	0.002	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
3L	16725839	3L_16725839_SNP [dm3] 3L_16732739_SNP [dm6]	C	A	5.860e^-7	0.002	UPSTREAM CG9701 INTERGENIC
3L	22430444	3L_22430444_SNP [dm3] 3L_22437344_SNP [dm6]	C	A	5.896e^-7	0.002	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11249233	2L_11249233_SNP [dm3] 2L_11249233_SNP [dm6]	T	G	5.948e^-7	0.002	INTRON ab
2R	2636488	2R_2636488_SNP [dm3] 2R_6748983_SNP [dm6]	A	T	5.950e^-7	0.002	UPSTREAM Eb1 DOWNSTREAM CG3267 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h
3R	23507823	3R_23507823_SNP [dm3] 3R_27682101_SNP [dm6]	G	T	5.952e^-7	0.002	UPSTREAM Sce INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
2L	11407612	2L_11407612_SNP [dm3] 2L_11407612_SNP [dm6]	T	A	5.970e^-7	0.002	INTERGENIC	regulatory region REDfly_CRMs
2R	7281662	2R_7281662_INS [dm3] 2R_11394157_INS [dm6]	A	AG	6.010e^-7	0.002	UPSTREAM tRNA:CR30257 INTRON sprt	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	18372303	2L_18372303_SNP [dm3] 2L_18372303_SNP [dm6]	C	T	6.020e^-7	0.002	INTRON Fas3
2R	8922163	2R_8922163_SNP [dm3] 2R_13034658_SNP [dm6]	G	C	6.034e^-7	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19585976	2R_19585976_SNP [dm3] 2R_23698453_SNP [dm6]	T	C	6.037e^-7	0.002	SYNONYMOUS_CODING mRpL43 UPSTREAM CG30183 DOWNSTREAM CG4091	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9642941	2L_9642941_SNP [dm3] 2L_9642941_SNP [dm6]	A	G	6.038e^-7	0.002	SYNONYMOUS_CODING Apoltp
2L	19625569	2L_19625569_SNP [dm3] 2L_19625569_SNP [dm6]	C	T	6.094e^-7	0.002	INTRON Lar
2L	12422525	2L_12422525_SNP [dm3] 2L_12422525_SNP [dm6]	G	A	6.279e^-7	0.002	UPSTREAM vir-1 INTRON vir-1	TF binding site BDTNP1_TFBS_z
2L	11200921	2L_11200921_SNP [dm3] 2L_11200921_SNP [dm6]	T	A	6.321e^-7	0.002	INTRON Ca-beta
2R	17874460	2R_17874460_SNP [dm3] 2R_21986955_SNP [dm6]	T	G	6.340e^-7	0.002	UPSTREAM CG30401 DOWNSTREAM CG34370 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17091218	3R_17091218_SNP [dm3] 3R_21265496_SNP [dm6]	T	G	6.395e^-7	0.002	DOWNSTREAM Rab1 & 1 other INTERGENIC
2L	19485949	2L_19485949_SNP [dm3] 2L_19485949_SNP [dm6]	G	A	6.464e^-7	0.002	INTRON CG13084	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7855937	3L_7855937_SNP [dm3] 3L_7862837_SNP [dm6]	C	A	6.492e^-7	0.002	INTRON Pdp1
X	10202931	X_10202931_SNP [dm3] X_10308898_SNP [dm6]	C	G	6.515e^-7	0.002	UTR_5_PRIME alpha-Man-I INTRON alpha-Man-I	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	9309490	2L_9309490_SNP [dm3] 2L_9309490_SNP [dm6]	T	C	6.527e^-7	0.002	INTERGENIC
2R	20517700	2R_20517700_SNP [dm3] 2R_24630177_SNP [dm6]	C	T	6.603e^-7	0.002	UPSTREAM Cyp9c1 DOWNSTREAM CR43787 INTRON CG13594
3L	3911132	3L_3911132_SNP [dm3] 3L_3911132_SNP [dm6]	T	G	6.603e^-7	0.002	UTR_3_PRIME Eip63F-1 DOWNSTREAM Eip63F-1
2R	5135534	2R_5135534_SNP [dm3] 2R_9248029_SNP [dm6]	A	T	6.628e^-7	0.002	UPSTREAM hig INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17091206	3R_17091206_SNP [dm3] 3R_21265484_SNP [dm6]	G	A	6.655e^-7	0.002	DOWNSTREAM Rab1 & 1 other INTERGENIC
2R	16931990	2R_16931990_SNP [dm3] 2R_21044485_SNP [dm6]	G	A	6.707e^-7	0.002	INTERGENIC
2R	16931992	2R_16931992_SNP [dm3] 2R_21044487_SNP [dm6]	C	A	6.707e^-7	0.002	INTERGENIC
3L	13761563	3L_13761563_SNP [dm3] 3L_13768463_SNP [dm6]	G	C	6.707e^-7	0.002	INTRON bru-3
2R	1877446	2R_1877446_SNP [dm3] 2R_5989941_SNP [dm6]	T	A	6.723e^-7	0.002	INTRON Src42A
3R	22878831	3R_22878831_SNP [dm3] 3R_27053109_SNP [dm6]	T	A	6.819e^-7	0.002	INTRON RYa-R
2L	11693755	2L_11693755_SNP [dm3] 2L_11693755_SNP [dm6]	T	C	6.965e^-7	0.002	INTERGENIC	TF binding site mE1_TFBS_inv
2R	13024582	2R_13024582_SNP [dm3] 2R_17137077_SNP [dm6]	T	C	7.056e^-7	0.002	UPSTREAM CG11395 DOWNSTREAM CR44391 & 1 other INTERGENIC
2L	14566098	2L_14566098_SNP [dm3] 2L_14566098_SNP [dm6]	A	G	7.123e^-7	0.002	INTERGENIC
2R	1714094	2R_1714094_SNP [dm3] 2R_5826589_SNP [dm6]	C	A	7.164e^-7	0.002	INTRON dpr12	TF binding site mE1_TFBS_HSA
2L	22171798	2L_22171798_SNP [dm3] 2L_22171798_SNP [dm6]	G	C	7.177e^-7	0.002	INTERGENIC	transposable element FlyBase
3L	10150780	3L_10150780_SNP [dm3] 3L_10157680_SNP [dm6]	A	G	7.223e^-7	0.002	INTRON dpr10
3L	10161640	3L_10161640_SNP [dm3] 3L_10168540_SNP [dm6]	G	A	7.223e^-7	0.002	INTRON dpr10
2L	20570046	2L_20570046_SNP [dm3] 2L_20570046_SNP [dm6]	G	T	7.265e^-7	0.002	INTRON CR45347
3R	23507882	3R_23507882_SNP [dm3] 3R_27682160_SNP [dm6]	T	A	7.305e^-7	0.002	UPSTREAM Sce INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
2L	13916299	2L_13916299_SNP [dm3] 2L_13916299_SNP [dm6]	G	T	7.321e^-7	0.002	INTRON Ance-3	TF binding site BDTNP1_TFBS_twi
2L	19947901	2L_19947901_SNP [dm3] 2L_19947901_SNP [dm6]	A	C	7.393e^-7	0.002	INTRON sick
3R	15101442	3R_15101442_DEL [dm3] 3R_19275720_DEL [dm6]	GCG	G	7.442e^-7	0.002	INTERGENIC
3L	8020396	3L_8020396_SNP [dm3] 3L_8027296_SNP [dm6]	A	T	7.442e^-7	0.002	INTRON nmo	TF binding site mE1_TFBS_cad
3R	12365992	3R_12365992_SNP [dm3] 3R_16540270_SNP [dm6]	T	C	7.452e^-7	0.002	INTRON CG42342
2L	19506370	2L_19506370_SNP [dm3] 2L_19506370_SNP [dm6]	A	T	7.486e^-7	0.002	INTRON CG10188	TF binding site mE1_TFBS_cad
X	8748417	X_8748417_SNP [dm3] X_8854384_SNP [dm6]	T	A	7.583e^-7	0.002	INTRON CG12075
3L	7854076	3L_7854076_SNP [dm3] 3L_7860976_SNP [dm6]	G	C	7.623e^-7	0.002	INTRON Pdp1
2R	7945733	2R_7945733_SNP [dm3] 2R_12058228_SNP [dm6]	T	C	7.710e^-7	0.002	INTRON Drep-3
3R	23859820	3R_23859820_SNP [dm3] 3R_28034098_SNP [dm6]	A	G	7.746e^-7	0.002	INTRON CG34362
3L	13011348	3L_13011348_SNP [dm3] 3L_13018248_SNP [dm6]	G	A	7.797e^-7	0.002	UPSTREAM ste14 & 1 other DOWNSTREAM CR45445 INTERGENIC
2L	18132404	2L_18132404_SNP [dm3] 2L_18132404_SNP [dm6]	A	C	7.921e^-7	0.002	SYNONYMOUS_CODING kel UTR_3_PRIME kel
2R	784981	2R_784981_SNP [dm3] 2R_4897476_SNP [dm6]	T	A	7.989e^-7	0.002	INTRON CG44102	transposable element FlyBase
3R	22741360	3R_22741360_SNP [dm3] 3R_26915638_SNP [dm6]	G	C	8.056e^-7	0.002	UPSTREAM sda INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8209414	3L_8209414_SNP [dm3] 3L_8216314_SNP [dm6]	C	A	8.056e^-7	0.002	DOWNSTREAM CG8012 INTERGENIC
2R	5278632	2R_5278632_SNP [dm3] 2R_9391127_SNP [dm6]	G	A	8.067e^-7	0.002	NON_SYNONYMOUS_CODING l_2_03659
2L	8756737	2L_8756737_SNP [dm3] 2L_8756737_SNP [dm6]	T	C	8.114e^-7	0.002	INTERGENIC
3L	5957182	3L_5957182_SNP [dm3] 3L_5964082_SNP [dm6]	G	A	8.227e^-7	0.002	INTERGENIC
3L	5957186	3L_5957186_SNP [dm3] 3L_5964086_SNP [dm6]	T	A	8.227e^-7	0.002	INTERGENIC
3L	5957189	3L_5957189_DEL [dm3] 3L_5964089_DEL [dm6]	ACTGAC	A	8.227e^-7	0.002	INTERGENIC
3L	5957197	3L_5957197_INS [dm3] 3L_5964097_INS [dm6]	T	TTCAAA	8.227e^-7	0.002	INTERGENIC
X	20779808	X_20779808_SNP [dm3] X_20908781_SNP [dm6]	A	C	8.233e^-7	0.002	INTRON shakB
3L	18720910	3L_18720910_SNP [dm3] 3L_18727810_SNP [dm6]	T	A	8.275e^-7	0.002	INTERGENIC
2R	8512929	2R_8512929_SNP [dm3] 2R_12625424_SNP [dm6]	T	C	8.297e^-7	0.002	UPSTREAM CG17760 DOWNSTREAM CG30054 INTERGENIC
2L	19508813	2L_19508813_SNP [dm3] 2L_19508813_SNP [dm6]	C	A	8.303e^-7	0.002	UPSTREAM CG10188 DOWNSTREAM CG10186 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	12842438	2L_12842438_SNP [dm3] 2L_12842438_SNP [dm6]	A	T	8.339e^-7	0.002	DOWNSTREAM CR44971 INTERGENIC
X	10197300	X_10197300_SNP [dm3] X_10303267_SNP [dm6]	G	A	8.347e^-7	0.002	INTRON alpha-Man-I
X	20988299	X_20988299_SNP [dm3] X_21117272_SNP [dm6]	T	C	8.347e^-7	0.002	UTR_5_PRIME CG15445 UPSTREAM unc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	23628844	3R_23628844_SNP [dm3] 3R_27803122_SNP [dm6]	G	A	8.472e^-7	0.002	INTRON CG34353
2L	11198515	2L_11198515_SNP [dm3] 2L_11198515_SNP [dm6]	G	A	8.514e^-7	0.002	INTRON Ca-beta
2L	13359809	2L_13359809_DEL [dm3] 2L_13359809_DEL [dm6]	AGGAAAGCTGGTCA...	A	8.523e^-7	0.002	DOWNSTREAM CG9377 INTERGENIC	TF binding site mE1_TFBS_cad
2L	8225329	2L_8225329_SNP [dm3] 2L_8225329_SNP [dm6]	T	C	8.593e^-7	0.002	SYNONYMOUS_CODING Pvr
2L	8225332	2L_8225332_SNP [dm3] 2L_8225332_SNP [dm6]	G	A	8.593e^-7	0.002	SYNONYMOUS_CODING Pvr
2L	15134477	2L_15134477_INS [dm3] 2L_15134477_INS [dm6]	C	TA	8.696e^-7	0.002	INTERGENIC
2R	20348336	2R_20348336_SNP [dm3] 2R_24460813_SNP [dm6]	A	T	8.788e^-7	0.002	INTRON CG13579
2L	12843046	2L_12843046_SNP [dm3] 2L_12843046_SNP [dm6]	A	G	9.029e^-7	0.002	INTERGENIC
2R	19515226	2R_19515226_SNP [dm3] 2R_23627703_SNP [dm6]	A	G	9.198e^-7	0.002	INTERGENIC
3L	3083856	3L_3083856_SNP [dm3] 3L_3083856_SNP [dm6]	C	A	9.454e^-7	0.002	INTRON CG11486	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	4454886	2R_4454886_SNP [dm3] 2R_8567381_SNP [dm6]	G	A	9.471e^-7	0.002	UPSTREAM Cyp6a14 INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	12111768	2R_12111768_SNP [dm3] 2R_16224263_SNP [dm6]	G	A	9.522e^-7	0.002	SYNONYMOUS_CODING CG15706	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4776977	3L_4776977_INS [dm3] 3L_4776977_INS [dm6]	A	AA	9.580e^-7	0.002	INTRON RhoGEF64C
X	3083762	X_3083762_SNP [dm3] X_3189729_SNP [dm6]	T	C	9.625e^-7	0.002	UTR_5_PRIME dnc INTRON dnc	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	18596086	2R_18596086_SNP [dm3] 2R_22708581_SNP [dm6]	T	G	9.732e^-7	0.002	UPSTREAM CR43735 DOWNSTREAM Obp58d INTRON CG30275
2R	18596092	2R_18596092_SNP [dm3] 2R_22708587_SNP [dm6]	C	T	9.732e^-7	0.002	UPSTREAM CR43735 DOWNSTREAM Obp58d INTRON CG30275
3L	11447236	3L_11447236_SNP [dm3] 3L_11454136_SNP [dm6]	C	G	9.751e^-7	0.002	INTERGENIC
3R	26564845	3R_26564845_SNP [dm3] 3R_30739123_SNP [dm6]	C	A	9.781e^-7	0.002	INTERGENIC
X	8748411	X_8748411_SNP [dm3] X_8854378_SNP [dm6]	G	T	9.891e^-7	0.002	INTRON CG12075
2R	2866429	2R_2866429_SNP [dm3] 2R_6978924_SNP [dm6]	C	G	1.003e^-6	0.002	UPSTREAM CR44170 INTRON vimar
2L	15736679	2L_15736679_SNP [dm3] 2L_15736679_SNP [dm6]	G	A	1.004e^-6	0.002	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16037790	2L_16037790_SNP [dm3] 2L_16037790_SNP [dm6]	G	C	1.024e^-6	0.002	INTRON beat-Ic
2R	8912380	2R_8912380_SNP [dm3] 2R_13024875_SNP [dm6]	T	A	1.028e^-6	0.002	INTERGENIC
2L	10071572	2L_10071572_SNP [dm3] 2L_10071572_SNP [dm6]	G	T	1.030e^-6	0.002	INTRON CG44153
2L	10071576	2L_10071576_SNP [dm3] 2L_10071576_SNP [dm6]	A	T	1.030e^-6	0.002	INTRON CG44153
2R	7716034	2R_7716034_SNP [dm3] 2R_11828529_SNP [dm6]	G	A	1.039e^-6	0.002	NON_SYNONYMOUS_CODING Sobp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20512422	2R_20512422_SNP [dm3] 2R_24624899_SNP [dm6]	G	A	1.045e^-6	0.002	INTRON CG13594
2R	632685	2R_632685_SNP [dm3] 2R_4745180_SNP [dm6]	C	G	1.059e^-6	0.002	INTRON conu
2L	16105916	2L_16105916_SNP [dm3] 2L_16105916_SNP [dm6]	T	C	1.066e^-6	0.002	INTERGENIC
3R	13463682	3R_13463682_SNP [dm3] 3R_17637960_SNP [dm6]	T	C	1.067e^-6	0.002	UPSTREAM CR45222 INTRON CG43175
2L	13929538	2L_13929538_SNP [dm3] 2L_13929538_SNP [dm6]	G	A	1.069e^-6	0.002	DOWNSTREAM CG42711 INTRON Ance-3
2L	22016210	2L_22016210_SNP [dm3] 2L_22016210_SNP [dm6]	G	A	1.089e^-6	0.003	SYNONYMOUS_CODING CG31693	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20855850	2L_20855850_SNP [dm3] 2L_20855850_SNP [dm6]	C	A	1.094e^-6	0.003	INTRON twit	TF binding site mE1_TFBS_inv
2L	21725660	2L_21725660_SNP [dm3] 2L_21725660_SNP [dm6]	G	C	1.105e^-6	0.003	INTRON CG31619	transposable element FlyBase
2L	21733298	2L_21733298_SNP [dm3] 2L_21733298_SNP [dm6]	A	T	1.108e^-6	0.003	INTERGENIC	transposable element FlyBase
2R	19314386	2R_19314386_SNP [dm3] 2R_23426863_SNP [dm6]	C	T	1.109e^-6	0.003	UPSTREAM CG9815 INTRON CG9815	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
2R	4414850	2R_4414850_SNP [dm3] 2R_8527345_SNP [dm6]	C	A	1.127e^-6	0.003	INTRON mtt
3L	1384345	3L_1384345_SNP [dm3] 3L_1384345_SNP [dm6]	G	T	1.128e^-6	0.003	INTRON Ptp61F & 1 other
3L	1384410	3L_1384410_SNP [dm3] 3L_1384410_SNP [dm6]	A	C	1.128e^-6	0.003	INTRON Ptp61F & 1 other
3L	14186483	3L_14186483_SNP [dm3] 3L_14193383_SNP [dm6]	G	A	1.135e^-6	0.003	INTRON nuf
2R	18232669	2R_18232669_INS [dm3] 2R_22345164_INS [dm6]	C	CTGCTGCTCC	1.146e^-6	0.003	CODON_INSERTION Liprin-gamma UTR_5_PRIME Liprin-gamma	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11404107	2L_11404107_SNP [dm3] 2L_11404107_SNP [dm6]	A	G	1.151e^-6	0.003	INTERGENIC	regulatory region REDfly_CRMs
X	5109413	X_5109413_SNP [dm3] X_5215380_SNP [dm6]	C	A	1.151e^-6	0.003	INTRON CG15465 & 1 other
2L	10915225	2L_10915225_DEL [dm3] 2L_10915225_DEL [dm6]	TT	T	1.156e^-6	0.003	INTERGENIC
2L	13378073	2L_13378073_SNP [dm3] 2L_13378073_SNP [dm6]	T	A	1.157e^-6	0.003	SYNONYMOUS_CODING CG9302 UPSTREAM beta'COP	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13380066	2L_13380066_SNP [dm3] 2L_13380066_SNP [dm6]	C	T	1.157e^-6	0.003	SYNONYMOUS_CODING beta'COP	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1364624	2R_1364624_SNP [dm3] 2R_5477119_SNP [dm6]	C	T	1.166e^-6	0.003	INTRON CG30440	transposable element FlyBase
2L	19634707	2L_19634707_SNP [dm3] 2L_19634707_SNP [dm6]	C	G	1.184e^-6	0.003	INTRON Lar
2R	5812256	2R_5812256_SNP [dm3] 2R_9924751_SNP [dm6]	G	A	1.185e^-6	0.003	INTRON Mef2	TF binding site mE1_TFBS_inv
2L	15966315	2L_15966315_SNP [dm3] 2L_15966315_SNP [dm6]	T	A	1.194e^-6	0.003	INTERGENIC
2R	8587154	2R_8587154_SNP [dm3] 2R_12699649_SNP [dm6]	G	A	1.227e^-6	0.003	UPSTREAM wuc INTERGENIC
2L	13356920	2L_13356920_SNP [dm3] 2L_13356920_SNP [dm6]	C	T	1.232e^-6	0.003	INTERGENIC
2R	10695532	2R_10695532_SNP [dm3] 2R_14808027_SNP [dm6]	T	A	1.232e^-6	0.003	UPSTREAM kn & 1 other INTERGENIC	regulatory region REDfly_CRMs
2L	19634711	2L_19634711_DEL [dm3] 2L_19634711_DEL [dm6]	GTGGTGC	G	1.250e^-6	0.003	INTRON Lar
X	16510689	X_16510689_SNP [dm3] X_16616656_SNP [dm6]	C	G	1.266e^-6	0.003	INTRON CG9782
X	19673107	X_19673107_SNP [dm3] X_19779074_SNP [dm6]	C	A	1.269e^-6	0.003	NON_SYNONYMOUS_CODING vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11608855	2L_11608855_SNP [dm3] 2L_11608855_SNP [dm6]	T	A	1.271e^-6	0.003	INTRON kek2	TF binding site mE1_TFBS_inv
2L	16037832	2L_16037832_SNP [dm3] 2L_16037832_SNP [dm6]	C	G	1.272e^-6	0.003	INTRON beat-Ic
2L	14414032	2L_14414032_SNP [dm3] 2L_14414032_SNP [dm6]	A	G	1.278e^-6	0.003	INTERGENIC
2R	6460832	2R_6460832_SNP [dm3] 2R_10573327_SNP [dm6]	G	A	1.282e^-6	0.003	INTRON psq
2R	2789058	2R_2789058_SNP [dm3] 2R_6901553_SNP [dm6]	T	A	1.287e^-6	0.003	INTRON CG30158
2L	19404557	2L_19404557_SNP [dm3] 2L_19404557_SNP [dm6]	G	T	1.289e^-6	0.003	SYNONYMOUS_CODING Pax UTR_5_PRIME Pax UPSTREAM snmRNA:359	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17111086	2L_17111086_SNP [dm3] 2L_17111086_SNP [dm6]	C	A	1.297e^-6	0.003	INTERGENIC
2L	17111814	2L_17111814_SNP [dm3] 2L_17111814_SNP [dm6]	C	G	1.297e^-6	0.003	INTERGENIC
2L	12143450	2L_12143450_SNP [dm3] 2L_12143450_SNP [dm6]	A	T	1.300e^-6	0.003	INTRON CG31760
2L	12143452	2L_12143452_SNP [dm3] 2L_12143452_SNP [dm6]	A	T	1.300e^-6	0.003	INTRON CG31760
2R	8912384	2R_8912384_SNP [dm3] 2R_13024879_SNP [dm6]	T	A	1.305e^-6	0.003	INTERGENIC
2L	13201933	2L_13201933_SNP [dm3] 2L_13201933_SNP [dm6]	C	A	1.308e^-6	0.003	NON_SYNONYMOUS_CODING CG16972	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11792188	2R_11792188_SNP [dm3] 2R_15904683_SNP [dm6]	G	A	1.310e^-6	0.003	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13351806	2L_13351806_SNP [dm3] 2L_13351806_SNP [dm6]	T	C	1.326e^-6	0.003	SYNONYMOUS_CODING CG9395
2L	11584444	2L_11584444_SNP [dm3] 2L_11584444_SNP [dm6]	A	C	1.326e^-6	0.003	DOWNSTREAM Mst33A INTRON kek2
2L	11584453	2L_11584453_SNP [dm3] 2L_11584453_SNP [dm6]	C	T	1.326e^-6	0.003	DOWNSTREAM Mst33A INTRON kek2
2R	10715042	2R_10715042_SNP [dm3] 2R_14827537_SNP [dm6]	T	C	1.338e^-6	0.003	INTERGENIC
2R	9427894	2R_9427894_SNP [dm3] 2R_13540389_SNP [dm6]	A	T	1.344e^-6	0.003	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
2R	8935287	2R_8935287_SNP [dm3] 2R_13047782_SNP [dm6]	C	A	1.346e^-6	0.003	UPSTREAM CG13323 INTERGENIC
3L	1384325	3L_1384325_SNP [dm3] 3L_1384325_SNP [dm6]	G	A	1.353e^-6	0.003	INTRON Ptp61F & 1 other
X	16808372	X_16808372_SNP [dm3] X_16914339_SNP [dm6]	T	G	1.356e^-6	0.003	INTRON CG4928	TF binding site mE1_TFBS_HSA
2L	13359579	2L_13359579_SNP [dm3] 2L_13359579_SNP [dm6]	A	T	1.361e^-6	0.003	DOWNSTREAM CG9377 INTERGENIC
2R	15725905	2R_15725905_DEL [dm3] 2R_19838400_DEL [dm6]	GCGATGG	G	1.366e^-6	0.003	INTERGENIC
3R	12365956	3R_12365956_SNP [dm3] 3R_16540234_SNP [dm6]	C	T	1.367e^-6	0.003	INTRON CG42342
2L	12143480	2L_12143480_SNP [dm3] 2L_12143480_SNP [dm6]	G	A	1.367e^-6	0.003	INTRON CG31760
2L	19689652	2L_19689652_INS [dm3] 2L_19689652_INS [dm6]	T	GCACAAC	1.378e^-6	0.003	INTRON Lar
X	16610549	X_16610549_SNP [dm3] X_16716516_SNP [dm6]	A	C	1.382e^-6	0.003	NON_SYNONYMOUS_CODING CG34325 INTRON CG34325
3L	19562302	3L_19562302_SNP [dm3] 3L_19569202_SNP [dm6]	C	T	1.394e^-6	0.003	INTRON Shal	TF binding site BDTNP1_TFBS_dl
2L	13378777	2L_13378777_SNP [dm3] 2L_13378777_SNP [dm6]	T	C	1.401e^-6	0.003	UPSTREAM beta'COP & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	18359700	2L_18359700_SNP [dm3] 2L_18359700_SNP [dm6]	C	T	1.423e^-6	0.003	UPSTREAM Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	18359715	2L_18359715_SNP [dm3] 2L_18359715_SNP [dm6]	A	G	1.423e^-6	0.003	UPSTREAM Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	497410	2R_497410_SNP [dm3] 2R_4609905_SNP [dm6]	A	T	1.435e^-6	0.003	DOWNSTREAM p120ctn INTERGENIC
2R	11456100	2R_11456100_SNP [dm3] 2R_15568595_SNP [dm6]	T	A	1.437e^-6	0.003	UPSTREAM CG30466 DOWNSTREAM Cdk5 INTRON Flo1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	19620694	3R_19620694_SNP [dm3] 3R_23794972_SNP [dm6]	A	G	1.453e^-6	0.003	SYNONYMOUS_CODING mbc
X	12096349	X_12096349_SNP [dm3] X_12202316_SNP [dm6]	T	A	1.455e^-6	0.003	INTRON Ten-a	enhancer mE1_CBP_Enhancers
2L	22557650	2L_22557650_SNP [dm3] 2L_22664918_SNP [dm6]	A	G	1.456e^-6	0.003	INTRON CG40006
2L	4818775	2L_4818775_DEL [dm3] 2L_4818775_DEL [dm6]	CGCCC	C	1.462e^-6	0.003	UPSTREAM mir-4910 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	10196351	X_10196351_SNP [dm3] X_10302318_SNP [dm6]	G	C	1.463e^-6	0.003	INTRON alpha-Man-I
2R	1322360	2R_1322360_SNP [dm3] 2R_5434855_SNP [dm6]	A	G	1.465e^-6	0.003	INTRON laccase2
2R	4393836	2R_4393836_SNP [dm3] 2R_8506331_SNP [dm6]	T	C	1.466e^-6	0.003	INTRON mtt
2R	4742193	2R_4742193_SNP [dm3] 2R_8854688_SNP [dm6]	C	T	1.476e^-6	0.003	UTR_3_PRIME sns
2R	5064126	2R_5064126_SNP [dm3] 2R_9176621_SNP [dm6]	G	A	1.476e^-6	0.003	SYNONYMOUS_CODING Rme-8	TF binding site BDTNP1_TFBS_dl
3R	18218081	3R_18218081_SNP [dm3] 3R_22392359_SNP [dm6]	A	C	1.476e^-6	0.003	UTR_3_PRIME CG13857 DOWNSTREAM CG7059
2R	17167185	2R_17167185_SNP [dm3] 2R_21279680_SNP [dm6]	A	G	1.485e^-6	0.003	INTRON Rgk3
2R	7576381	2R_7576381_SNP [dm3] 2R_11688876_SNP [dm6]	C	T	1.488e^-6	0.003	UTR_3_PRIME wal DOWNSTREAM wal & 1 other
3L	21918491	3L_21918491_SNP [dm3] 3L_21925391_SNP [dm6]	G	C	1.489e^-6	0.003	UTR_3_PRIME mub
3R	22884741	3R_22884741_SNP [dm3] 3R_27059019_SNP [dm6]	T	A	1.491e^-6	0.003	SPLICE_SITE_REGION Nep5 UTR_3_PRIME Nep5 INTRON Nep5	TF binding site mE1_TFBS_chinmo
2R	4718691	2R_4718691_SNP [dm3] 2R_8831186_SNP [dm6]	C	T	1.495e^-6	0.003	INTRON sns	TF binding site mE1_TFBS_chinmo
2L	14855888	2L_14855888_SNP [dm3] 2L_14855888_SNP [dm6]	A	C	1.523e^-6	0.003	INTERGENIC
2R	18596000	2R_18596000_SNP [dm3] 2R_22708495_SNP [dm6]	C	T	1.561e^-6	0.003	DOWNSTREAM Obp58d INTRON CG30275 EXON CR43735
2R	16648324	2R_16648324_SNP [dm3] 2R_20760819_SNP [dm6]	T	C	1.585e^-6	0.003	INTERGENIC
3L	3563680	3L_3563680_SNP [dm3] 3L_3563680_SNP [dm6]	G	A	1.585e^-6	0.003	INTRON Eip63E
2L	11584438	2L_11584438_DEL [dm3] 2L_11584438_DEL [dm6]	TATT	T	1.596e^-6	0.003	DOWNSTREAM Mst33A INTRON kek2
3L	9817618	3L_9817618_SNP [dm3] 3L_9824518_SNP [dm6]	T	G	1.602e^-6	0.003	UPSTREAM Ilp5 INTRON CG43897
2R	6460808	2R_6460808_SNP [dm3] 2R_10573303_SNP [dm6]	C	A	1.609e^-6	0.003	INTRON psq
3L	23864773	3L_23864773_SNP [dm3] 3L_23871673_SNP [dm6]	G	C	1.624e^-6	0.003	INTRON CG40470
2R	7690345	2R_7690345_SNP [dm3] 2R_11802840_SNP [dm6]	A	G	1.653e^-6	0.003	INTRON ths
2L	19487299	2L_19487299_SNP [dm3] 2L_19487299_SNP [dm6]	G	A	1.654e^-6	0.003	UPSTREAM CG13083 DOWNSTREAM CG13084 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
2R	20216450	2R_20216450_SNP [dm3] 2R_24328927_SNP [dm6]	T	A	1.656e^-6	0.003	UPSTREAM CR44810 INTRON CR44810
2L	19221029	2L_19221029_SNP [dm3] 2L_19221029_SNP [dm6]	C	T	1.660e^-6	0.003	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	4628608	2R_4628608_SNP [dm3] 2R_8741103_SNP [dm6]	T	C	1.671e^-6	0.003	INTRON CG8740
2R	5053204	2R_5053204_SNP [dm3] 2R_9165699_SNP [dm6]	T	C	1.684e^-6	0.004	UTR_5_PRIME Rad51C UPSTREAM CG8046 DOWNSTREAM CG42382	TF binding site BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	3562839	3L_3562839_SNP [dm3] 3L_3562839_SNP [dm6]	G	A	1.687e^-6	0.004	INTRON Eip63E
2R	8828247	2R_8828247_SNP [dm3] 2R_12940742_SNP [dm6]	T	G	1.706e^-6	0.004	SYNONYMOUS_CODING Mdr49 DOWNSTREAM Sans	TF binding site mE1_TFBS_chinmo
2R	3428621	2R_3428621_SNP [dm3] 2R_7541116_SNP [dm6]	C	T	1.719e^-6	0.004	INTRON Corin
2R	3429218	2R_3429218_SNP [dm3] 2R_7541713_SNP [dm6]	C	T	1.719e^-6	0.004	INTRON Corin
2R	3429763	2R_3429763_SNP [dm3] 2R_7542258_SNP [dm6]	G	A	1.719e^-6	0.004	INTRON Corin
2R	3431865	2R_3431865_SNP [dm3] 2R_7544360_SNP [dm6]	T	A	1.719e^-6	0.004	UPSTREAM Corin INTRON Corin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3431923	2R_3431923_SNP [dm3] 2R_7544418_SNP [dm6]	A	C	1.719e^-6	0.004	UPSTREAM Corin INTRON Corin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3432681	2R_3432681_SNP [dm3] 2R_7545176_SNP [dm6]	G	C	1.719e^-6	0.004	UTR_5_PRIME Corin INTRON Corin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3432923	2R_3432923_SNP [dm3] 2R_7545418_SNP [dm6]	T	C	1.719e^-6	0.004	UTR_5_PRIME Corin INTRON Corin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3433484	2R_3433484_SNP [dm3] 2R_7545979_SNP [dm6]	T	C	1.719e^-6	0.004	START_GAINED Corin UTR_5_PRIME Corin INTRON Corin
X	16516223	X_16516223_SNP [dm3] X_16622190_SNP [dm6]	A	T	1.762e^-6	0.004	UPSTREAM CG9782 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23984402	3R_23984402_SNP [dm3] 3R_28158680_SNP [dm6]	T	G	1.764e^-6	0.004	INTRON CG34354
2R	3434124	2R_3434124_SNP [dm3] 2R_7546619_SNP [dm6]	A	C	1.768e^-6	0.004	INTRON Corin
3L	9793552	3L_9793552_SNP [dm3] 3L_9800452_SNP [dm6]	T	C	1.769e^-6	0.004	DOWNSTREAM Ilp3 & 1 other INTRON CG32052
2R	4753771	2R_4753771_SNP [dm3] 2R_8866266_SNP [dm6]	G	A	1.771e^-6	0.004	INTRON RyR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4753888	2R_4753888_SNP [dm3] 2R_8866383_SNP [dm6]	C	T	1.771e^-6	0.004	INTRON RyR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11114326	2L_11114326_SNP [dm3] 2L_11114326_SNP [dm6]	C	T	1.772e^-6	0.004	SYNONYMOUS_CODING Gr32a	TF binding site mE1_TFBS_cad
2L	21925060	2L_21925060_SNP [dm3] 2L_21925060_SNP [dm6]	G	A	1.772e^-6	0.004	INTERGENIC	transposable element FlyBase
3L	11510183	3L_11510183_SNP [dm3] 3L_11517083_SNP [dm6]	C	A	1.787e^-6	0.004	INTRON CG7512
3L	11510185	3L_11510185_SNP [dm3] 3L_11517085_SNP [dm6]	T	C	1.787e^-6	0.004	INTRON CG7512
3L	13689566	3L_13689566_SNP [dm3] 3L_13696466_SNP [dm6]	C	A	1.787e^-6	0.004	INTRON bru-3
2L	14387128	2L_14387128_SNP [dm3] 2L_14387128_SNP [dm6]	C	T	1.792e^-6	0.004	INTERGENIC
2L	15051484	2L_15051484_SNP [dm3] 2L_15051484_SNP [dm6]	C	A	1.792e^-6	0.004	INTRON ck	regulatory region REDfly_CRMs
2L	15051513	2L_15051513_SNP [dm3] 2L_15051513_SNP [dm6]	A	T	1.792e^-6	0.004	INTRON ck	regulatory region REDfly_CRMs
2L	15051516	2L_15051516_SNP [dm3] 2L_15051516_SNP [dm6]	C	T	1.792e^-6	0.004	INTRON ck	regulatory region REDfly_CRMs
2L	15054125	2L_15054125_SNP [dm3] 2L_15054125_SNP [dm6]	C	T	1.792e^-6	0.004	INTRON ck	regulatory region REDfly_CRMs
2L	15054168	2L_15054168_SNP [dm3] 2L_15054168_SNP [dm6]	C	T	1.792e^-6	0.004	INTRON ck	regulatory region REDfly_CRMs
2L	20356798	2L_20356798_SNP [dm3] 2L_20356798_SNP [dm6]	T	G	1.792e^-6	0.004	SYNONYMOUS_CODING RtGEF	TF binding site mE1_TFBS_cad
3L	13243946	3L_13243946_SNP [dm3] 3L_13250846_SNP [dm6]	T	C	1.792e^-6	0.004	INTRON caps	TF binding site mE1_TFBS_HSA
2L	11242332	2L_11242332_SNP [dm3] 2L_11242332_SNP [dm6]	G	T	1.799e^-6	0.004	INTRON ab
2R	8512922	2R_8512922_SNP [dm3] 2R_12625417_SNP [dm6]	C	T	1.800e^-6	0.004	UPSTREAM CG17760 DOWNSTREAM CG30054 INTERGENIC
X	10874582	X_10874582_SNP [dm3] X_10980549_SNP [dm6]	T	G	1.808e^-6	0.004	INTRON CG42339
2L	6346884	2L_6346884_SNP [dm3] 2L_6346884_SNP [dm6]	G	A	1.812e^-6	0.004	SYNONYMOUS_CODING CG9497 DOWNSTREAM Cpr	TF binding site mE1_TFBS_cnc
2L	6346896	2L_6346896_SNP [dm3] 2L_6346896_SNP [dm6]	C	T	1.812e^-6	0.004	SYNONYMOUS_CODING CG9497 DOWNSTREAM Cpr	TF binding site mE1_TFBS_cnc
2L	18522159	2L_18522159_SNP [dm3] 2L_18522159_SNP [dm6]	A	T	1.819e^-6	0.004	INTRON CG10211
2R	8921058	2R_8921058_SNP [dm3] 2R_13033553_SNP [dm6]	A	T	1.834e^-6	0.004	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8921065	2R_8921065_SNP [dm3] 2R_13033560_SNP [dm6]	T	A	1.834e^-6	0.004	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14175518	2L_14175518_SNP [dm3] 2L_14175518_SNP [dm6]	T	A	1.840e^-6	0.004	INTRON CG43333
2R	20347486	2R_20347486_SNP [dm3] 2R_24459963_SNP [dm6]	G	T	1.840e^-6	0.004	INTRON CG13579
2R	4748297	2R_4748297_SNP [dm3] 2R_8860792_SNP [dm6]	G	A	1.850e^-6	0.004	INTRON RyR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11610300	2L_11610300_SNP [dm3] 2L_11610300_SNP [dm6]	C	G	1.863e^-6	0.004	DOWNSTREAM spag4 INTRON kek2
X	8068474	X_8068474_DEL [dm3] X_8174441_DEL [dm6]	AGAGTA	A	1.863e^-6	0.004	INTRON slpr
2R	19246104	2R_19246104_SNP [dm3] 2R_23358581_SNP [dm6]	G	A	1.871e^-6	0.004	UPSTREAM CG34423 & 1 other DOWNSTREAM CG9875 EXON CR44168
2R	8450658	2R_8450658_SNP [dm3] 2R_12563153_SNP [dm6]	G	T	1.893e^-6	0.004	UTR_3_PRIME fra DOWNSTREAM CG30056
2R	16038148	2R_16038148_SNP [dm3] 2R_20150643_SNP [dm6]	C	T	1.907e^-6	0.004	UPSTREAM CR45229 INTERGENIC
2L	10927162	2L_10927162_SNP [dm3] 2L_10927162_SNP [dm6]	A	C	1.909e^-6	0.004	INTRON dpr2
2R	1695879	2R_1695879_SNP [dm3] 2R_5808374_SNP [dm6]	C	G	1.916e^-6	0.004	INTRON dpr12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12185064	2L_12185064_SNP [dm3] 2L_12185064_SNP [dm6]	T	A	1.918e^-6	0.004	INTRON aret
2L	17545400	2L_17545400_SNP [dm3] 2L_17545400_SNP [dm6]	A	G	1.927e^-6	0.004	INTERGENIC
2L	17549775	2L_17549775_SNP [dm3] 2L_17549775_SNP [dm6]	C	T	1.927e^-6	0.004	INTERGENIC
2L	17554419	2L_17554419_SNP [dm3] 2L_17554419_SNP [dm6]	G	A	1.927e^-6	0.004	UTR_3_PRIME CG7094
2L	17558844	2L_17558844_SNP [dm3] 2L_17558844_SNP [dm6]	C	G	1.927e^-6	0.004	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	17559246	2L_17559246_DEL [dm3] 2L_17559246_DEL [dm6]	ACCCGCAATA	A	1.927e^-6	0.004	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	17559393	2L_17559393_DEL [dm3] 2L_17559393_DEL [dm6]	ACA	A	1.927e^-6	0.004	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	17563155	2L_17563155_SNP [dm3] 2L_17563155_SNP [dm6]	A	T	1.927e^-6	0.004	INTERGENIC
3L	3907704	3L_3907704_SNP [dm3] 3L_3907704_SNP [dm6]	C	A	1.943e^-6	0.004	SYNONYMOUS_CODING ida DOWNSTREAM mge
2R	17825466	2R_17825466_DEL [dm3] 2R_21937961_DEL [dm6]	TGC	T	1.946e^-6	0.004	INTRON Fili
3R	14371988	3R_14371988_SNP [dm3] 3R_18546266_SNP [dm6]	A	T	1.952e^-6	0.004	UPSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22962235	3R_22962235_SNP [dm3] 3R_27136513_SNP [dm6]	T	C	1.952e^-6	0.004	INTRON CG6051
2R	497411	2R_497411_SNP [dm3] 2R_4609906_SNP [dm6]	A	C	1.956e^-6	0.004	DOWNSTREAM p120ctn INTERGENIC
2R	20508703	2R_20508703_SNP [dm3] 2R_24621180_SNP [dm6]	C	A	1.963e^-6	0.004	INTRON CG13594	TF binding site mE1_TFBS_chinmo
2L	16108025	2L_16108025_SNP [dm3] 2L_16108025_SNP [dm6]	G	C	1.976e^-6	0.004	INTERGENIC
2L	11308959	2L_11308959_SNP [dm3] 2L_11308959_SNP [dm6]	C	A	1.978e^-6	0.004	DOWNSTREAM CR43721 INTERGENIC
2L	11310303	2L_11310303_SNP [dm3] 2L_11310303_SNP [dm6]	A	G	1.978e^-6	0.004	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3563545	3L_3563545_SNP [dm3] 3L_3563545_SNP [dm6]	G	A	1.978e^-6	0.004	INTRON Eip63E
3L	3563548	3L_3563548_DEL [dm3] 3L_3563548_DEL [dm6]	TC	T	1.978e^-6	0.004	INTRON Eip63E
3L	3563560	3L_3563560_SNP [dm3] 3L_3563560_SNP [dm6]	T	G	1.978e^-6	0.004	INTRON Eip63E
3R	25368940	3R_25368940_SNP [dm3] 3R_29543218_SNP [dm6]	C	A	1.981e^-6	0.004	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10715031	2R_10715031_SNP [dm3] 2R_14827526_SNP [dm6]	T	G	1.986e^-6	0.004	INTERGENIC
2L	14038834	2L_14038834_SNP [dm3] 2L_14038834_SNP [dm6]	T	C	1.989e^-6	0.004	UPSTREAM CR45284 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	9318524	3R_9318524_SNP [dm3] 3R_13492802_SNP [dm6]	T	C	1.990e^-6	0.004	INTERGENIC
3L	10705623	3L_10705623_SNP [dm3] 3L_10712523_SNP [dm6]	G	A	1.993e^-6	0.004	INTERGENIC
2R	9596462	2R_9596462_SNP [dm3] 2R_13708957_SNP [dm6]	A	T	2.027e^-6	0.004	INTRON fas
2R	7117314	2R_7117314_SNP [dm3] 2R_11229809_SNP [dm6]	G	A	2.041e^-6	0.004	SYNONYMOUS_CODING metro	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14455416	3R_14455416_SNP [dm3] 3R_18629694_SNP [dm6]	C	G	2.044e^-6	0.004	SYNONYMOUS_CODING CG14301 INTRON qin
2L	7187687	2L_7187687_SNP [dm3] 2L_7187687_SNP [dm6]	G	C	2.044e^-6	0.004	INTRON CG4496	TF binding site BDTNP1_TFBS_dl
3R	17892094	3R_17892094_SNP [dm3] 3R_22066372_SNP [dm6]	A	G	2.046e^-6	0.004	INTRON how
3R	17892183	3R_17892183_SNP [dm3] 3R_22066461_SNP [dm6]	A	T	2.046e^-6	0.004	INTRON how
2R	20210067	2R_20210067_INS [dm3] 2R_24322544_INS [dm6]	T	TGAGT	2.058e^-6	0.004	INTERGENIC
2R	20210093	2R_20210093_SNP [dm3] 2R_24322570_SNP [dm6]	A	T	2.058e^-6	0.004	INTERGENIC
2R	20210915	2R_20210915_SNP [dm3] 2R_24323392_SNP [dm6]	G	T	2.058e^-6	0.004	INTERGENIC	TF binding site mE1_TFBS_inv
2R	20210916	2R_20210916_SNP [dm3] 2R_24323393_SNP [dm6]	G	T	2.058e^-6	0.004	INTERGENIC	TF binding site mE1_TFBS_inv
2R	20211883	2R_20211883_SNP [dm3] 2R_24324360_SNP [dm6]	A	G	2.058e^-6	0.004	UPSTREAM CR44810 INTERGENIC
2L	13350161	2L_13350161_SNP [dm3] 2L_13350161_SNP [dm6]	G	T	2.059e^-6	0.004	UTR_3_PRIME CG9395
3L	9608423	3L_9608423_SNP [dm3] 3L_9615323_SNP [dm6]	C	T	2.071e^-6	0.004	UPSTREAM LanB2 INTRON LanB2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	2636649	2R_2636649_SNP [dm3] 2R_6749144_SNP [dm6]	A	T	2.073e^-6	0.004	UPSTREAM Eb1 DOWNSTREAM CG3267 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
3R	24009322	3R_24009322_SNP [dm3] 3R_28183600_SNP [dm6]	G	A	2.085e^-6	0.004	INTRON CG34354
2R	3428368	2R_3428368_SNP [dm3] 2R_7540863_SNP [dm6]	G	A	2.104e^-6	0.004	INTRON Corin
2L	17563128	2L_17563128_SNP [dm3] 2L_17563128_SNP [dm6]	A	T	2.111e^-6	0.004	INTERGENIC
2R	13024642	2R_13024642_SNP [dm3] 2R_17137137_SNP [dm6]	T	A	2.128e^-6	0.004	UPSTREAM CG11395 DOWNSTREAM CR44391 & 1 other INTERGENIC
3L	13287248	3L_13287248_SNP [dm3] 3L_13294148_SNP [dm6]	T	C	2.131e^-6	0.004	INTERGENIC
2L	15033071	2L_15033071_SNP [dm3] 2L_15033071_SNP [dm6]	G	A	2.134e^-6	0.004	UTR_3_PRIME GABA-B-R1
3L	13694707	3L_13694707_SNP [dm3] 3L_13701607_SNP [dm6]	C	T	2.134e^-6	0.004	INTRON bru-3
3L	3563000	3L_3563000_SNP [dm3] 3L_3563000_SNP [dm6]	C	G	2.143e^-6	0.004	INTRON Eip63E
2R	780182	2R_780182_SNP [dm3] 2R_4892677_SNP [dm6]	A	G	2.144e^-6	0.004	INTERGENIC	transposable element FlyBase
2R	20423839	2R_20423839_SNP [dm3] 2R_24536316_SNP [dm6]	T	C	2.151e^-6	0.004	SYNONYMOUS_CODING CG11413 UTR_5_PRIME CG4622 UPSTREAM CG4622	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4563663	2R_4563663_SNP [dm3] 2R_8676158_SNP [dm6]	T	C	2.153e^-6	0.004	UTR_5_PRIME Acsl UPSTREAM Acsl INTRON Acsl
2R	1580936	2R_1580936_SNP [dm3] 2R_5693431_SNP [dm6]	C	T	2.158e^-6	0.004	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
2R	19127039	2R_19127039_SNP [dm3] 2R_23239516_SNP [dm6]	C	A	2.159e^-6	0.004	INTERGENIC
2R	7708930	2R_7708930_SNP [dm3] 2R_11821425_SNP [dm6]	T	A	2.160e^-6	0.004	INTERGENIC
2R	7709491	2R_7709491_DEL [dm3] 2R_11821986_DEL [dm6]	CCATTCCAGTGCCC...	C	2.160e^-6	0.004	INTERGENIC
2R	4753122	2R_4753122_SNP [dm3] 2R_8865617_SNP [dm6]	T	G	2.165e^-6	0.004	INTRON RyR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10286489	X_10286489_SNP [dm3] X_10392456_SNP [dm6]	C	T	2.165e^-6	0.004	INTRON flw
2L	10927170	2L_10927170_SNP [dm3] 2L_10927170_SNP [dm6]	C	T	2.166e^-6	0.004	INTRON dpr2
3R	24056059	3R_24056059_SNP [dm3] 3R_28230337_SNP [dm6]	A	G	2.166e^-6	0.004	INTRON CG34354
3L	13685818	3L_13685818_SNP [dm3] 3L_13692718_SNP [dm6]	C	G	2.177e^-6	0.004	INTRON bru-3
2L	11402233	2L_11402233_SNP [dm3] 2L_11402233_SNP [dm6]	T	G	2.190e^-6	0.004	INTERGENIC	regulatory region REDfly_CRMs
X	9191762	X_9191762_SNP [dm3] X_9297729_SNP [dm6]	A	T	2.190e^-6	0.004	INTRON lz
2L	17555907	2L_17555907_SNP [dm3] 2L_17555907_SNP [dm6]	G	C	2.214e^-6	0.004	UPSTREAM CG7094 INTERGENIC

By genomic position
Variant impact
Gene name

Microbiota_OTU019 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results