DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.544e^-12)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.07930

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.1092	0.0779

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

5424 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	9618070	3R_9618070_SNP [dm3] 3R_13792348_SNP [dm6]	T	C	3.235e^-12	6.018e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11904523	3R_11904523_SNP [dm3] 3R_16078801_SNP [dm6]	A	G	3.508e^-11	3.263e^-5	DOWNSTREAM CG32855 INTRON Mhcl	TF binding site mE1_TFBS_chinmo
3R	10414691	3R_10414691_SNP [dm3] 3R_14588969_SNP [dm6]	C	T	8.925e^-11	5.535e^-5	INTRON stumps	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13894166	3R_13894166_SNP [dm3] 3R_18068444_SNP [dm6]	G	T	2.450e^-10	1.140e^-4	INTERGENIC
3L	10822535	3L_10822535_INS [dm3] 3L_10829435_INS [dm6]	C	CTTAC	3.161e^-10	1.176e^-4	INTERGENIC
2L	7179238	2L_7179238_SNP [dm3] 2L_7179238_SNP [dm6]	A	G	4.881e^-10	1.513e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8532863	X_8532863_SNP [dm3] X_8638830_SNP [dm6]	G	C	8.427e^-10	2.240e^-4	INTRON oc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	13191874	2L_13191874_SNP [dm3] 2L_13191874_SNP [dm6]	T	A	1.121e^-9	2.607e^-4	UPSTREAM Edem2 INTRON CG16974	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9866316	3R_9866316_SNP [dm3] 3R_14040594_SNP [dm6]	G	T	1.749e^-9	3.404e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4912742	2L_4912742_SNP [dm3] 2L_4912742_SNP [dm6]	G	A	1.830e^-9	3.404e^-4	SYNONYMOUS_CODING hoe1 UTR_5_PRIME hoe1
2L	22107382	2L_22107382_SNP [dm3] 2L_22107382_SNP [dm6]	G	A	2.130e^-9	3.457e^-4	UPSTREAM CG10834 INTERGENIC
2L	13197527	2L_13197527_DEL [dm3] 2L_13197527_DEL [dm6]	CTC	C	2.230e^-9	3.457e^-4	UTR_3_PRIME CG16972 DOWNSTREAM Edem2	TF binding site mE1_TFBS_cad
2L	7179327	2L_7179327_SNP [dm3] 2L_7179327_SNP [dm6]	T	A	2.605e^-9	3.674e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18355682	2R_18355682_SNP [dm3] 2R_22468177_SNP [dm6]	A	G	2.765e^-9	3.674e^-4	INTRON CG10384	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	9627709	3R_9627709_SNP [dm3] 3R_13801987_SNP [dm6]	C	T	3.823e^-9	4.741e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	11333169	X_11333169_SNP [dm3] X_11439136_SNP [dm6]	G	A	4.258e^-9	4.800e^-4	INTRON Evi5
3R	13894150	3R_13894150_SNP [dm3] 3R_18068428_SNP [dm6]	G	A	4.386e^-9	4.800e^-4	INTERGENIC
3L	1337662	3L_1337662_SNP [dm3] 3L_1337662_SNP [dm6]	T	C	6.027e^-9	6.229e^-4	NON_SYNONYMOUS_CODING l_3_02640	TF binding site mE1_TFBS_chinmo
2L	4164647	2L_4164647_SNP [dm3] 2L_4164647_SNP [dm6]	C	A	7.503e^-9	7.347e^-4	DOWNSTREAM Or24a INTERGENIC
2L	3461450	2L_3461450_SNP [dm3] 2L_3461450_SNP [dm6]	C	T	8.209e^-9	7.636e^-4	SYNONYMOUS_CODING CG3246 DOWNSTREAM msl-2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	19984272	2R_19984272_SNP [dm3] 2R_24096749_SNP [dm6]	T	A	1.214e^-8	0.001	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	13197661	2L_13197661_SNP [dm3] 2L_13197661_SNP [dm6]	G	T	1.239e^-8	0.001	SYNONYMOUS_CODING CG16972 DOWNSTREAM Edem2	TF binding site mE1_TFBS_cad
2R	3243754	2R_3243754_SNP [dm3] 2R_7356249_SNP [dm6]	T	C	1.589e^-8	0.001	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3243772	2R_3243772_SNP [dm3] 2R_7356267_SNP [dm6]	T	C	1.589e^-8	0.001	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16436867	2R_16436867_SNP [dm3] 2R_20549362_SNP [dm6]	T	A	1.601e^-8	0.001	UTR_5_PRIME Obp57d UTR_3_PRIME Cpr57A DOWNSTREAM CG13430 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	8532859	X_8532859_INS [dm3] X_8638826_INS [dm6]	A	ATCCTTACTCCCTAATCCTT...	1.630e^-8	0.001	INTRON oc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	12554589	3R_12554589_INS [dm3] 3R_16728867_INS [dm6]	T	TTTTTTTTTATTTTTTTA...	1.672e^-8	0.001	INTRON Ubx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12554591	3R_12554591_SNP [dm3] 3R_16728869_SNP [dm6]	G	A	1.672e^-8	0.001	INTRON Ubx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20893443	X_20893443_SNP [dm3] X_21022416_SNP [dm6]	C	T	2.658e^-8	0.002	DOWNSTREAM r-cup INTERGENIC
3R	4245775	3R_4245775_SNP [dm3] 3R_8420053_SNP [dm6]	C	T	2.986e^-8	0.002	SYNONYMOUS_CODING Obp85a INTRON CG45263
3R	12554671	3R_12554671_SNP [dm3] 3R_16728949_SNP [dm6]	T	A	3.153e^-8	0.002	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8396704	3R_8396704_SNP [dm3] 3R_12570982_SNP [dm6]	A	G	3.211e^-8	0.002	INTRON Octbeta2R
3L	1343143	3L_1343143_DEL [dm3] 3L_1343143_DEL [dm6]	TC	T	3.295e^-8	0.002	UTR_3_PRIME Ptp61F UPSTREAM CG2199 DOWNSTREAM Ptp61F INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	20296567	3L_20296567_SNP [dm3] 3L_20303467_SNP [dm6]	A	G	3.332e^-8	0.002	DOWNSTREAM CG32225 INTRON CG6597	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22107514	2L_22107514_SNP [dm3] 2L_22107514_SNP [dm6]	A	C	3.719e^-8	0.002	UPSTREAM CG10834 INTERGENIC
3L	1341596	3L_1341596_DEL [dm3] 3L_1341596_DEL [dm6]	GTATTAG	G	3.769e^-8	0.002	CODON_DELETION CG2199 DOWNSTREAM Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	5380242	2L_5380242_SNP [dm3] 2L_5380242_SNP [dm6]	G	A	3.976e^-8	0.002	EXON CR42850	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10831130	X_10831130_INS [dm3] X_10937097_INS [dm6]	A	AATCCAACTCCAA...	4.204e^-8	0.002	INTRON Myo10A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8577690	2L_8577690_SNP [dm3] 2L_8577690_SNP [dm6]	C	A	4.523e^-8	0.002	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	20323008	2R_20323008_SNP [dm3] 2R_24435485_SNP [dm6]	G	C	5.035e^-8	0.002	INTERGENIC
2L	9091067	2L_9091067_SNP [dm3] 2L_9091067_SNP [dm6]	T	A	5.051e^-8	0.002	INTERGENIC
2R	13682205	2R_13682205_SNP [dm3] 2R_17794700_SNP [dm6]	T	C	5.140e^-8	0.002	INTRON Dhit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	13682234	2R_13682234_SNP [dm3] 2R_17794729_SNP [dm6]	A	T	5.140e^-8	0.002	INTRON Dhit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4289381	2L_4289381_SNP [dm3] 2L_4289381_SNP [dm6]	C	T	5.608e^-8	0.002	INTRON tutl
2L	15209849	2L_15209849_SNP [dm3] 2L_15209849_SNP [dm6]	A	C	5.682e^-8	0.002	INTERGENIC
3R	20555202	3R_20555202_SNP [dm3] 3R_24729480_SNP [dm6]	C	T	5.744e^-8	0.002	INTRON tok
3L	3754267	3L_3754267_SNP [dm3] 3L_3754267_SNP [dm6]	C	T	5.884e^-8	0.002	NON_SYNONYMOUS_CODING ppk27 INTRON CG32264
2L	994668	2L_994668_SNP [dm3] 2L_994668_SNP [dm6]	G	A	6.314e^-8	0.002	INTERGENIC
2L	995360	2L_995360_SNP [dm3] 2L_995360_SNP [dm6]	C	T	6.314e^-8	0.002	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	995690	2L_995690_SNP [dm3] 2L_995690_SNP [dm6]	A	G	6.314e^-8	0.002	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1580861	3L_1580861_SNP [dm3] 3L_1580861_SNP [dm6]	C	A	6.314e^-8	0.002	INTRON CG13917
3L	2205149	3L_2205149_SNP [dm3] 3L_2205149_SNP [dm6]	T	A	6.314e^-8	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	2206130	3L_2206130_SNP [dm3] 3L_2206130_SNP [dm6]	T	C	6.314e^-8	0.002	INTERGENIC
3L	2206700	3L_2206700_SNP [dm3] 3L_2206700_SNP [dm6]	C	T	6.314e^-8	0.002	INTERGENIC
3L	2207162	3L_2207162_SNP [dm3] 3L_2207162_SNP [dm6]	G	A	6.314e^-8	0.002	INTERGENIC
3L	2207299	3L_2207299_SNP [dm3] 3L_2207299_SNP [dm6]	A	C	6.314e^-8	0.002	INTERGENIC
3L	2207304	3L_2207304_SNP [dm3] 3L_2207304_SNP [dm6]	T	C	6.314e^-8	0.002	INTERGENIC
3L	2207713	3L_2207713_SNP [dm3] 3L_2207713_SNP [dm6]	G	A	6.314e^-8	0.002	INTERGENIC
3L	2207714	3L_2207714_SNP [dm3] 3L_2207714_SNP [dm6]	A	G	6.314e^-8	0.002	INTERGENIC
3L	5384649	3L_5384649_SNP [dm3] 3L_5391549_SNP [dm6]	C	T	6.314e^-8	0.002	INTERGENIC
3R	25461868	3R_25461868_SNP [dm3] 3R_29636146_SNP [dm6]	G	A	6.314e^-8	0.002	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
2L	10006758	2L_10006758_SNP [dm3] 2L_10006758_SNP [dm6]	G	A	6.347e^-8	0.002	INTRON CG4747
3L	3980922	3L_3980922_SNP [dm3] 3L_3980922_SNP [dm6]	A	G	6.746e^-8	0.002	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	6082025	2L_6082025_SNP [dm3] 2L_6082025_SNP [dm6]	T	C	6.758e^-8	0.002	UPSTREAM Kr-h1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9851664	2L_9851664_SNP [dm3] 2L_9851664_SNP [dm6]	C	T	6.799e^-8	0.002	INTRON nAChRalpha6
3R	13794646	3R_13794646_SNP [dm3] 3R_17968924_SNP [dm6]	T	G	6.815e^-8	0.002	INTRON cpo
2L	9086487	2L_9086487_SNP [dm3] 2L_9086487_SNP [dm6]	A	G	7.807e^-8	0.002	NON_SYNONYMOUS_CODING Toll-4
2L	9086505	2L_9086505_SNP [dm3] 2L_9086505_SNP [dm6]	A	T	7.807e^-8	0.002	NON_SYNONYMOUS_CODING Toll-4
2L	9091465	2L_9091465_SNP [dm3] 2L_9091465_SNP [dm6]	C	T	7.807e^-8	0.002	INTERGENIC
3L	2207308	3L_2207308_INS [dm3] 3L_2207308_INS [dm6]	C	TA	7.807e^-8	0.002	INTERGENIC
3L	2209117	3L_2209117_SNP [dm3] 3L_2209117_SNP [dm6]	G	C	7.807e^-8	0.002	INTERGENIC
3L	6817434	3L_6817434_SNP [dm3] 3L_6824334_SNP [dm6]	G	A	7.936e^-8	0.002	INTERGENIC	regulatory region REDfly_CRMs
3R	25461890	3R_25461890_SNP [dm3] 3R_29636168_SNP [dm6]	C	T	8.012e^-8	0.002	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
2R	18426784	2R_18426784_SNP [dm3] 2R_22539279_SNP [dm6]	T	A	8.262e^-8	0.002	INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25433107	3R_25433107_SNP [dm3] 3R_29607385_SNP [dm6]	A	T	8.443e^-8	0.002	INTRON alph
3R	5662272	3R_5662272_SNP [dm3] 3R_9836550_SNP [dm6]	A	C	8.462e^-8	0.002	INTRON Teh1
3R	13794833	3R_13794833_SNP [dm3] 3R_17969111_SNP [dm6]	A	G	8.941e^-8	0.002	INTRON cpo
3L	4532404	3L_4532404_SNP [dm3] 3L_4532404_SNP [dm6]	A	G	9.202e^-8	0.002	UPSTREAM Tie & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2207660	3L_2207660_SNP [dm3] 3L_2207660_SNP [dm6]	C	G	9.530e^-8	0.002	INTERGENIC
3L	11320143	3L_11320143_SNP [dm3] 3L_11327043_SNP [dm6]	A	T	9.743e^-8	0.002	INTERGENIC
3R	12673660	3R_12673660_SNP [dm3] 3R_16847938_SNP [dm6]	A	G	9.857e^-8	0.002	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3R	12674774	3R_12674774_SNP [dm3] 3R_16849052_SNP [dm6]	T	A	9.857e^-8	0.002	UPSTREAM iab-8 & 1 other INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12674810	3R_12674810_SNP [dm3] 3R_16849088_SNP [dm6]	A	G	9.857e^-8	0.002	UPSTREAM iab-8 & 1 other INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12675040	3R_12675040_SNP [dm3] 3R_16849318_SNP [dm6]	G	A	9.857e^-8	0.002	UPSTREAM iab-8 & 1 other INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11319920	3L_11319920_SNP [dm3] 3L_11326820_SNP [dm6]	T	A	1.031e^-7	0.002	INTERGENIC
2L	10979332	2L_10979332_SNP [dm3] 2L_10979332_SNP [dm6]	G	A	1.046e^-7	0.002	INTRON SCAR
2R	6621377	2R_6621377_SNP [dm3] 2R_10733872_SNP [dm6]	G	T	1.046e^-7	0.002	INTRON CG7220
2L	12173026	2L_12173026_SNP [dm3] 2L_12173026_SNP [dm6]	A	T	1.052e^-7	0.002	UTR_5_PRIME crok UPSTREAM CG6583	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9582178	2R_9582178_SNP [dm3] 2R_13694673_SNP [dm6]	C	A	1.081e^-7	0.002	INTRON fas
3L	20277252	3L_20277252_SNP [dm3] 3L_20284152_SNP [dm6]	A	G	1.083e^-7	0.002	INTRON gogo
3L	2699017	3L_2699017_SNP [dm3] 3L_2699017_SNP [dm6]	A	C	1.098e^-7	0.002	INTRON Fife
3L	2699137	3L_2699137_SNP [dm3] 3L_2699137_SNP [dm6]	C	A	1.098e^-7	0.002	INTRON Fife
2L	9446178	2L_9446178_SNP [dm3] 2L_9446178_SNP [dm6]	G	C	1.107e^-7	0.002	INTRON numb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17908928	2R_17908928_SNP [dm3] 2R_22021423_SNP [dm6]	T	C	1.120e^-7	0.002	INTRON CG34370
2R	17294578	2R_17294578_SNP [dm3] 2R_21407073_SNP [dm6]	C	T	1.169e^-7	0.002	INTRON Sdc
3L	11319883	3L_11319883_SNP [dm3] 3L_11326783_SNP [dm6]	G	A	1.223e^-7	0.002	INTERGENIC
3L	10889985	3L_10889985_SNP [dm3] 3L_10896885_SNP [dm6]	G	T	1.237e^-7	0.002	SPLICE_SITE_REGION Aps INTRON Aps
3R	12069216	3R_12069216_SNP [dm3] 3R_16243494_SNP [dm6]	A	T	1.253e^-7	0.002	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12040967	3R_12040967_SNP [dm3] 3R_16215245_SNP [dm6]	C	T	1.278e^-7	0.002	DOWNSTREAM CR45641 INTERGENIC
2L	5106629	2L_5106629_SNP [dm3] 2L_5106629_SNP [dm6]	A	G	1.284e^-7	0.002	INTRON Msp300
3R	12673696	3R_12673696_SNP [dm3] 3R_16847974_SNP [dm6]	G	T	1.319e^-7	0.002	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
X	13039441	X_13039441_SNP [dm3] X_13145408_SNP [dm6]	T	A	1.375e^-7	0.002	INTRON CG32645
2R	17000322	2R_17000322_SNP [dm3] 2R_21112817_SNP [dm6]	A	G	1.384e^-7	0.002	INTRON ktub
2L	6589418	2L_6589418_SNP [dm3] 2L_6589418_SNP [dm6]	C	T	1.429e^-7	0.003	INTRON CG11319
2L	9126692	2L_9126692_SNP [dm3] 2L_9126692_SNP [dm6]	T	C	1.496e^-7	0.003	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3R	12956616	3R_12956616_DEL [dm3] 3R_17130894_DEL [dm6]	TT	T	1.563e^-7	0.003	UPSTREAM CG17475 DOWNSTREAM CG4053 INTERGENIC
3L	13180921	3L_13180921_SNP [dm3] 3L_13187821_SNP [dm6]	C	T	1.693e^-7	0.003	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	6458615	2R_6458615_SNP [dm3] 2R_10571110_SNP [dm6]	A	G	1.744e^-7	0.003	INTRON psq	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3024272	3L_3024272_SNP [dm3] 3L_3024272_SNP [dm6]	C	T	1.889e^-7	0.003	UTR_3_PRIME aly DOWNSTREAM aly
2L	970577	2L_970577_SNP [dm3] 2L_970577_SNP [dm6]	C	A	1.918e^-7	0.003	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18427774	2R_18427774_SNP [dm3] 2R_22540269_SNP [dm6]	A	T	1.972e^-7	0.003	INTRON px
3R	12035285	3R_12035285_SNP [dm3] 3R_16209563_SNP [dm6]	G	A	2.046e^-7	0.003	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 EXON CR45637
X	2369305	X_2369305_SNP [dm3] X_2475272_SNP [dm6]	T	C	2.134e^-7	0.004	SYNONYMOUS_CODING trol DOWNSTREAM trol	TF binding site mE1_TFBS_cad
2L	10320342	2L_10320342_SNP [dm3] 2L_10320342_SNP [dm6]	G	C	2.173e^-7	0.004	INTRON CG5381
3L	10923991	3L_10923991_SNP [dm3] 3L_10930891_SNP [dm6]	A	T	2.244e^-7	0.004	INTERGENIC
3L	2698082	3L_2698082_SNP [dm3] 3L_2698082_SNP [dm6]	A	G	2.639e^-7	0.004	INTRON Fife
2L	379490	2L_379490_SNP [dm3] 2L_379490_SNP [dm6]	A	C	2.799e^-7	0.004	INTRON al	TF binding site mE1_TFBS_sens
2L	11852216	2L_11852216_SNP [dm3] 2L_11852216_SNP [dm6]	A	C	2.856e^-7	0.004	NON_SYNONYMOUS_CODING Mal-B2 INTRON Pde1c
2L	11322582	2L_11322582_SNP [dm3] 2L_11322582_SNP [dm6]	C	T	2.898e^-7	0.004	INTERGENIC
3R	21694878	3R_21694878_SNP [dm3] 3R_25869156_SNP [dm6]	A	C	2.916e^-7	0.004	INTRON CG5890	TF binding site mE1_TFBS_HSA
3R	19139067	3R_19139067_SNP [dm3] 3R_23313345_SNP [dm6]	G	A	2.980e^-7	0.004	INTRON pnt	TF binding site BDTNP1_TFBS_dl
3L	5782663	3L_5782663_SNP [dm3] 3L_5789563_SNP [dm6]	C	T	2.980e^-7	0.004	DOWNSTREAM Bre1 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	5782669	3L_5782669_SNP [dm3] 3L_5789569_SNP [dm6]	G	T	2.980e^-7	0.004	DOWNSTREAM Bre1 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	5782670	3L_5782670_SNP [dm3] 3L_5789570_SNP [dm6]	T	A	2.980e^-7	0.004	DOWNSTREAM Bre1 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	9856000	3L_9856000_SNP [dm3] 3L_9862900_SNP [dm6]	G	A	3.252e^-7	0.005	SYNONYMOUS_CODING iPLA2-VIA
3L	9856019	3L_9856019_SNP [dm3] 3L_9862919_SNP [dm6]	A	G	3.252e^-7	0.005	INTRON iPLA2-VIA
2L	22107511	2L_22107511_INS [dm3] 2L_22107511_INS [dm6]	C	CAAGTCGTTTCATATGCTT...	3.354e^-7	0.005	UPSTREAM CG10834 INTERGENIC
2L	9105838	2L_9105838_SNP [dm3] 2L_9105838_SNP [dm6]	G	A	3.364e^-7	0.005	INTERGENIC
3L	9678204	3L_9678204_SNP [dm3] 3L_9685104_SNP [dm6]	G	T	3.550e^-7	0.005	UPSTREAM CG16719 INTRON CG6767	TF binding site mE1_TFBS_cad
2L	12172980	2L_12172980_SNP [dm3] 2L_12172980_SNP [dm6]	C	T	3.610e^-7	0.005	UPSTREAM crok & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18291644	3L_18291644_INS [dm3] 3L_18298544_INS [dm6]	TT	CGAGGGCTAATGGCTCGAAG...	3.859e^-7	0.005	DOWNSTREAM CG13700 INTERGENIC
2L	12172979	2L_12172979_SNP [dm3] 2L_12172979_SNP [dm6]	A	G	4.025e^-7	0.006	UPSTREAM crok & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Ubx
3R	12704807	3R_12704807_SNP [dm3] 3R_16879085_SNP [dm6]	G	A	4.047e^-7	0.006	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	18496257	X_18496257_SNP [dm3] X_18602224_SNP [dm6]	C	T	4.093e^-7	0.006	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7767052	2L_7767052_SNP [dm3] 2L_7767052_SNP [dm6]	T	A	4.106e^-7	0.006	UPSTREAM CG7191 INTERGENIC
2L	10672999	2L_10672999_SNP [dm3] 2L_10672999_SNP [dm6]	G	A	4.160e^-7	0.006	INTERGENIC
3L	3980903	3L_3980903_SNP [dm3] 3L_3980903_SNP [dm6]	G	T	4.375e^-7	0.006	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	7948066	3L_7948066_SNP [dm3] 3L_7954966_SNP [dm6]	G	T	4.582e^-7	0.006	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11114079	3L_11114079_SNP [dm3] 3L_11120979_SNP [dm6]	T	C	4.852e^-7	0.006	SYNONYMOUS_CODING mRpL2 UPSTREAM fd68A DOWNSTREAM Ufd1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13612376	2R_13612376_SNP [dm3] 2R_17724871_SNP [dm6]	A	G	5.018e^-7	0.007	UTR_3_PRIME CG10933 DOWNSTREAM Snx16	TF binding site mE1_TFBS_HSA
2R	13612401	2R_13612401_DEL [dm3] 2R_17724896_DEL [dm6]	CTAACACTAAAGCGTAATAT...	C	5.018e^-7	0.007	UTR_3_PRIME CG10933 DOWNSTREAM Snx16	TF binding site mE1_TFBS_HSA
3R	21905488	3R_21905488_SNP [dm3] 3R_26079766_SNP [dm6]	C	T	5.033e^-7	0.007	INTRON dys
2R	9866162	2R_9866162_SNP [dm3] 2R_13978657_SNP [dm6]	A	C	5.072e^-7	0.007	INTRON CG6701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11896271	3R_11896271_SNP [dm3] 3R_16070549_SNP [dm6]	G	T	5.083e^-7	0.007	SYNONYMOUS_CODING Mhcl	TF binding site mE1_TFBS_cad
3R	13917819	3R_13917819_SNP [dm3] 3R_18092097_SNP [dm6]	G	C	5.137e^-7	0.007	INTRON sr
X	14492282	X_14492282_SNP [dm3] X_14598249_SNP [dm6]	G	A	5.137e^-7	0.007	INTRON CG9413
2L	5334402	2L_5334402_SNP [dm3] 2L_5334402_SNP [dm6]	A	T	5.457e^-7	0.007	INTRON fusl
2R	4226897	2R_4226897_SNP [dm3] 2R_8339392_SNP [dm6]	C	T	5.509e^-7	0.007	INTRON pdm3
2L	14574119	2L_14574119_SNP [dm3] 2L_14574119_SNP [dm6]	T	C	5.532e^-7	0.007	INTERGENIC
3R	13278661	3R_13278661_SNP [dm3] 3R_17452939_SNP [dm6]	T	A	5.574e^-7	0.007	INTERGENIC
2L	85557	2L_85557_INS [dm3] 2L_85557_INS [dm6]	A	AA	5.609e^-7	0.007	INTRON net	TF binding site mE1_TFBS_cad
3L	8504649	3L_8504649_SNP [dm3] 3L_8511549_SNP [dm6]	C	A	5.644e^-7	0.007	SYNONYMOUS_CODING CG6745	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	13278713	3R_13278713_SNP [dm3] 3R_17452991_SNP [dm6]	C	T	5.670e^-7	0.007	INTERGENIC
3L	7460175	3L_7460175_SNP [dm3] 3L_7467075_SNP [dm6]	T	A	5.690e^-7	0.007	SPLICE_SITE_REGION CG42660 & 2 others UTR_5_PRIME Tsp66A UTR_3_PRIME CG42660 & 1 other UPSTREAM Tsp66A	TF binding site BDTNP1_TFBS_twi
3R	12039781	3R_12039781_SNP [dm3] 3R_16214059_SNP [dm6]	G	T	5.700e^-7	0.007	UPSTREAM CR45641 DOWNSTREAM CR45642 INTERGENIC
3L	12873896	3L_12873896_SNP [dm3] 3L_12880796_SNP [dm6]	T	C	5.909e^-7	0.007	INTERGENIC	TF binding site mE1_TFBS_inv
3R	12036822	3R_12036822_SNP [dm3] 3R_16211100_SNP [dm6]	C	T	5.924e^-7	0.007	INTERGENIC
3R	26522292	3R_26522292_SNP [dm3] 3R_30696570_SNP [dm6]	G	A	6.050e^-7	0.007	SYNONYMOUS_CODING Pka-C2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	1937425	2R_1937425_INS [dm3] 2R_6049920_INS [dm6]	T	TT	6.199e^-7	0.007	UTR_3_PRIME CG34212
2L	9091485	2L_9091485_SNP [dm3] 2L_9091485_SNP [dm6]	T	A	6.247e^-7	0.007	INTERGENIC
X	16878154	X_16878154_SNP [dm3] X_16984121_SNP [dm6]	T	C	6.319e^-7	0.007	INTRON CG45002
3L	13049252	3L_13049252_SNP [dm3] 3L_13056152_SNP [dm6]	G	C	6.327e^-7	0.007	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	12169463	2L_12169463_SNP [dm3] 2L_12169463_SNP [dm6]	A	T	6.476e^-7	0.007	UTR_3_PRIME CG31760
3L	5703629	3L_5703629_SNP [dm3] 3L_5710529_SNP [dm6]	T	A	6.483e^-7	0.007	INTRON sif
3L	5703630	3L_5703630_SNP [dm3] 3L_5710530_SNP [dm6]	C	A	6.483e^-7	0.007	INTRON sif
3L	12541258	3L_12541258_SNP [dm3] 3L_12548158_SNP [dm6]	G	C	6.597e^-7	0.007	INTRON sowah
2L	12338693	2L_12338693_SNP [dm3] 2L_12338693_SNP [dm6]	G	C	6.723e^-7	0.007	UPSTREAM CG31862 INTERGENIC
3R	10276311	3R_10276311_SNP [dm3] 3R_14450589_SNP [dm6]	G	C	6.858e^-7	0.008	INTRON cv-c
3R	12956459	3R_12956459_SNP [dm3] 3R_17130737_SNP [dm6]	C	A	6.925e^-7	0.008	UPSTREAM CG17475 DOWNSTREAM CG4053 INTERGENIC
2R	18741732	2R_18741732_SNP [dm3] 2R_22854209_SNP [dm6]	T	A	7.170e^-7	0.008	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	12040682	3R_12040682_SNP [dm3] 3R_16214960_SNP [dm6]	A	T	7.243e^-7	0.008	DOWNSTREAM CR45641 INTERGENIC
3R	12040684	3R_12040684_SNP [dm3] 3R_16214962_SNP [dm6]	G	T	7.243e^-7	0.008	DOWNSTREAM CR45641 INTERGENIC
3L	4275822	3L_4275822_SNP [dm3] 3L_4275822_SNP [dm6]	T	C	7.246e^-7	0.008	SYNONYMOUS_CODING CG1273
3R	17511046	3R_17511046_SNP [dm3] 3R_21685324_SNP [dm6]	A	G	7.605e^-7	0.008	INTRON CG31176
3R	21700020	3R_21700020_SNP [dm3] 3R_25874298_SNP [dm6]	A	G	7.678e^-7	0.008	UTR_3_PRIME Tsp96F
2L	5792124	2L_5792124_SNP [dm3] 2L_5792124_SNP [dm6]	G	T	7.833e^-7	0.008	INTRON CG9171
2L	13445347	2L_13445347_SNP [dm3] 2L_13445347_SNP [dm6]	G	A	7.889e^-7	0.008	SYNONYMOUS_CODING CG9267 INTRON CG42784	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3L	1341615	3L_1341615_SNP [dm3] 3L_1341615_SNP [dm6]	A	T	8.242e^-7	0.008	NON_SYNONYMOUS_CODING CG2199 DOWNSTREAM Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	1341675	3L_1341675_SNP [dm3] 3L_1341675_SNP [dm6]	G	T	8.242e^-7	0.008	NON_SYNONYMOUS_CODING CG2199 DOWNSTREAM Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	19139207	3R_19139207_SNP [dm3] 3R_23313485_SNP [dm6]	A	G	8.242e^-7	0.008	SYNONYMOUS_CODING pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	6662430	3R_6662430_SNP [dm3] 3R_10836708_SNP [dm6]	G	C	8.242e^-7	0.008	INTRON Cad86C
3R	24598352	3R_24598352_DEL [dm3] 3R_28772630_DEL [dm6]	AA	A	8.465e^-7	0.009	INTERGENIC
X	21861911	X_21861911_INS [dm3] X_22460075_INS [dm6]	T	TT	8.673e^-7	0.009	INTRON CG14619	transposable element FlyBase
3R	25986894	3R_25986894_SNP [dm3] 3R_30161172_SNP [dm6]	C	A	8.754e^-7	0.009	UPSTREAM CG11498 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	16372815	2L_16372815_SNP [dm3] 2L_16372815_SNP [dm6]	T	C	8.838e^-7	0.009	INTERGENIC
3L	4275288	3L_4275288_SNP [dm3] 3L_4275288_SNP [dm6]	T	C	8.954e^-7	0.009	SYNONYMOUS_CODING CG1273
2L	7179351	2L_7179351_SNP [dm3] 2L_7179351_SNP [dm6]	A	G	8.970e^-7	0.009	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17028245	2R_17028245_SNP [dm3] 2R_21140740_SNP [dm6]	C	T	9.003e^-7	0.009	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	11926271	2R_11926271_SNP [dm3] 2R_16038766_SNP [dm6]	T	G	9.145e^-7	0.009	INTRON SP2353	TF binding site mE1_TFBS_cad
3L	4275498	3L_4275498_SNP [dm3] 3L_4275498_SNP [dm6]	T	G	9.298e^-7	0.009	SYNONYMOUS_CODING CG1273	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2960776	2R_2960776_SNP [dm3] 2R_7073271_SNP [dm6]	C	T	9.325e^-7	0.009	NON_SYNONYMOUS_CODING CG12831
2L	10613677	2L_10613677_DEL [dm3] 2L_10613677_DEL [dm6]	TAAAATTCATAGG...	A	9.330e^-7	0.009	INTRON Trim9
2L	2293457	2L_2293457_SNP [dm3] 2L_2293457_SNP [dm6]	A	G	9.358e^-7	0.009	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	14370524	3R_14370524_SNP [dm3] 3R_18544802_SNP [dm6]	A	T	9.439e^-7	0.009	INTRON fru
3L	2886871	3L_2886871_SNP [dm3] 3L_2886871_SNP [dm6]	C	A	9.586e^-7	0.009	SYNONYMOUS_CODING spz5
2L	15971273	2L_15971273_SNP [dm3] 2L_15971273_SNP [dm6]	T	C	9.618e^-7	0.009	INTERGENIC
3R	14498162	3R_14498162_SNP [dm3] 3R_18672440_SNP [dm6]	T	G	9.755e^-7	0.009	DOWNSTREAM CG31230 INTRON CG7702
X	6517609	X_6517609_SNP [dm3] X_6623576_SNP [dm6]	T	C	9.772e^-7	0.009	INTRON pigs
3R	9872571	3R_9872571_SNP [dm3] 3R_14046849_SNP [dm6]	A	G	9.844e^-7	0.009	INTERGENIC
3L	1343338	3L_1343338_SNP [dm3] 3L_1343338_SNP [dm6]	G	A	9.932e^-7	0.009	UTR_3_PRIME Ptp61F UPSTREAM CG2199 DOWNSTREAM Ptp61F INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1343810	3L_1343810_SNP [dm3] 3L_1343810_SNP [dm6]	G	T	9.932e^-7	0.009	UTR_3_PRIME Ptp61F DOWNSTREAM Ptp61F INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi
3L	22221718	3L_22221718_INS [dm3] 3L_22228618_INS [dm6]	T	TT	1.012e^-6	0.009	INTRON olf413	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12153396	3L_12153396_SNP [dm3] 3L_12160296_SNP [dm6]	A	T	1.064e^-6	0.01	INTRON CG9760
3L	12153397	3L_12153397_SNP [dm3] 3L_12160297_SNP [dm6]	C	T	1.064e^-6	0.01	INTRON CG9760
3R	15218268	3R_15218268_SNP [dm3] 3R_19392546_SNP [dm6]	G	T	1.072e^-6	0.01	UPSTREAM CG3739 DOWNSTREAM CG18493 INTRON Ino80	TF binding site mE1_TFBS_inv
2R	14203629	2R_14203629_SNP [dm3] 2R_18316124_SNP [dm6]	G	A	1.079e^-6	0.01	INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17078489	2L_17078489_SNP [dm3] 2L_17078489_SNP [dm6]	A	T	1.086e^-6	0.01	INTERGENIC
3R	12675149	3R_12675149_DEL [dm3] 3R_16849427_DEL [dm6]	GG	G	1.094e^-6	0.01	UPSTREAM iab-8 & 1 other INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12675174	3R_12675174_SNP [dm3] 3R_16849452_SNP [dm6]	C	G	1.094e^-6	0.01	UPSTREAM iab-8 & 1 other INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4854974	2L_4854974_SNP [dm3] 2L_4854974_SNP [dm6]	T	A	1.138e^-6	0.01	INTRON pog	TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3R	11426270	3R_11426270_SNP [dm3] 3R_15600548_SNP [dm6]	G	A	1.158e^-6	0.01	INTERGENIC
3R	24237956	3R_24237956_SNP [dm3] 3R_28412234_SNP [dm6]	G	T	1.161e^-6	0.01	INTERGENIC
X	19357448	X_19357448_SNP [dm3] X_19463415_SNP [dm6]	C	T	1.164e^-6	0.01	INTRON kek5
2L	13207499	2L_13207499_SNP [dm3] 2L_13207499_SNP [dm6]	G	T	1.176e^-6	0.01	INTRON Pect
3R	24568420	3R_24568420_SNP [dm3] 3R_28742698_SNP [dm6]	C	A	1.201e^-6	0.01	INTRON AstA-R2
3L	3980917	3L_3980917_SNP [dm3] 3L_3980917_SNP [dm6]	T	A	1.221e^-6	0.01	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	18427871	2R_18427871_SNP [dm3] 2R_22540366_SNP [dm6]	A	T	1.224e^-6	0.01	INTRON px
X	9007178	X_9007178_SNP [dm3] X_9113145_SNP [dm6]	T	A	1.246e^-6	0.011	INTRON AP-1gamma
2L	6081936	2L_6081936_SNP [dm3] 2L_6081936_SNP [dm6]	A	C	1.254e^-6	0.011	UPSTREAM Kr-h1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8397187	3R_8397187_SNP [dm3] 3R_12571465_SNP [dm6]	T	A	1.304e^-6	0.011	INTRON Octbeta2R
3L	9487053	3L_9487053_SNP [dm3] 3L_9493953_SNP [dm6]	G	A	1.352e^-6	0.011	DOWNSTREAM path INTERGENIC
3R	6692454	3R_6692454_SNP [dm3] 3R_10866732_SNP [dm6]	G	A	1.364e^-6	0.011	INTRON SelR	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6692491	3R_6692491_SNP [dm3] 3R_10866769_SNP [dm6]	T	G	1.364e^-6	0.011	INTRON SelR	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16560668	2L_16560668_SNP [dm3] 2L_16560668_SNP [dm6]	G	A	1.368e^-6	0.011	INTRON CG42389
3L	6854697	3L_6854697_SNP [dm3] 3L_6861597_SNP [dm6]	C	A	1.380e^-6	0.011	INTERGENIC	TF binding site mE1_TFBS_sens
3L	6854707	3L_6854707_SNP [dm3] 3L_6861607_SNP [dm6]	G	T	1.380e^-6	0.011	INTERGENIC	TF binding site mE1_TFBS_sens
3L	6854723	3L_6854723_SNP [dm3] 3L_6861623_SNP [dm6]	G	A	1.380e^-6	0.011	INTERGENIC	TF binding site mE1_TFBS_sens
3L	6854768	3L_6854768_SNP [dm3] 3L_6861668_SNP [dm6]	T	A	1.380e^-6	0.011	INTERGENIC	TF binding site mE1_TFBS_sens
3L	6854801	3L_6854801_SNP [dm3] 3L_6861701_SNP [dm6]	G	T	1.380e^-6	0.011	INTERGENIC
3L	6854944	3L_6854944_SNP [dm3] 3L_6861844_SNP [dm6]	C	T	1.380e^-6	0.011	INTERGENIC
2L	1700347	2L_1700347_SNP [dm3] 2L_1700347_SNP [dm6]	T	C	1.404e^-6	0.011	UTR_3_PRIME chinmo
3L	4275651	3L_4275651_SNP [dm3] 3L_4275651_SNP [dm6]	G	A	1.444e^-6	0.012	SYNONYMOUS_CODING CG1273
2R	20161854	2R_20161854_SNP [dm3] 2R_24274331_SNP [dm6]	G	T	1.444e^-6	0.012	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	15101167	X_15101167_SNP [dm3] X_15207134_SNP [dm6]	T	C	1.455e^-6	0.012	UPSTREAM CG32588 INTERGENIC
X	1120154	X_1120154_SNP [dm3] X_1226121_SNP [dm6]	G	A	1.467e^-6	0.012	SYNONYMOUS_CODING CG3638	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2293453	2L_2293453_SNP [dm3] 2L_2293453_SNP [dm6]	A	G	1.475e^-6	0.012	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11075605	3L_11075605_SNP [dm3] 3L_11082505_SNP [dm6]	T	G	1.516e^-6	0.012	INTRON JIL-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3980915	3L_3980915_SNP [dm3] 3L_3980915_SNP [dm6]	C	A	1.573e^-6	0.012	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	20911191	3L_20911191_SNP [dm3] 3L_20918091_SNP [dm6]	A	G	1.670e^-6	0.013	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	2367431	X_2367431_SNP [dm3] X_2473398_SNP [dm6]	A	T	1.670e^-6	0.013	SYNONYMOUS_CODING trol	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19883718	3L_19883718_SNP [dm3] 3L_19890618_SNP [dm6]	G	A	1.671e^-6	0.013	UTR_3_PRIME Su_Tpl_ DOWNSTREAM Su_Tpl_ INTRON Mi-2
X	18913358	X_18913358_SNP [dm3] X_19019325_SNP [dm6]	C	T	1.672e^-6	0.013	INTRON CG43759
3L	5325881	3L_5325881_SNP [dm3] 3L_5332781_SNP [dm6]	C	T	1.672e^-6	0.013	INTERGENIC
3R	12956479	3R_12956479_INS [dm3] 3R_17130757_INS [dm6]	T	TT	1.672e^-6	0.013	UPSTREAM CG17475 DOWNSTREAM CG4053 INTERGENIC
3R	25432737	3R_25432737_SNP [dm3] 3R_29607015_SNP [dm6]	G	T	1.688e^-6	0.013	INTRON alph
2L	3824403	2L_3824403_SNP [dm3] 2L_3824403_SNP [dm6]	A	T	1.740e^-6	0.013	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	10957806	2R_10957806_SNP [dm3] 2R_15070301_SNP [dm6]	G	T	1.740e^-6	0.013	INTERGENIC
3R	8397162	3R_8397162_SNP [dm3] 3R_12571440_SNP [dm6]	A	C	1.754e^-6	0.013	INTRON Octbeta2R
X	21934597	X_21934597_SNP [dm3] X_22532761_SNP [dm6]	A	G	1.842e^-6	0.014	INTRON CG17600 & 1 other
3R	17469030	3R_17469030_SNP [dm3] 3R_21643308_SNP [dm6]	T	C	1.861e^-6	0.014	INTRON E2f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2980271	2L_2980271_SNP [dm3] 2L_2980271_SNP [dm6]	C	T	1.901e^-6	0.014	NON_SYNONYMOUS_CODING Chd1 UPSTREAM CG9643	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26466117	3R_26466117_SNP [dm3] 3R_30640395_SNP [dm6]	A	T	1.920e^-6	0.014	INTERGENIC
3R	9415214	3R_9415214_SNP [dm3] 3R_13589492_SNP [dm6]	G	A	1.926e^-6	0.014	DOWNSTREAM CG14370 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	9415220	3R_9415220_SNP [dm3] 3R_13589498_SNP [dm6]	A	T	1.926e^-6	0.014	DOWNSTREAM CG14370 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	9415226	3R_9415226_SNP [dm3] 3R_13589504_SNP [dm6]	A	T	1.926e^-6	0.014	DOWNSTREAM CG14370 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12162729	2L_12162729_SNP [dm3] 2L_12162729_SNP [dm6]	C	T	1.948e^-6	0.014	DOWNSTREAM CG31861 INTRON CG31760
3L	16873236	3L_16873236_SNP [dm3] 3L_16880136_SNP [dm6]	T	C	1.962e^-6	0.014	DOWNSTREAM CG32170 INTRON Lmpt
3R	12040670	3R_12040670_SNP [dm3] 3R_16214948_SNP [dm6]	G	T	1.990e^-6	0.014	EXON CR45641
3R	12043748	3R_12043748_SNP [dm3] 3R_16218026_SNP [dm6]	C	A	1.990e^-6	0.014	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	4024183	3R_4024183_SNP [dm3] 3R_8198461_SNP [dm6]	A	G	2.002e^-6	0.014	UPSTREAM CR43302 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA
2L	2293577	2L_2293577_SNP [dm3] 2L_2293577_SNP [dm6]	T	A	2.021e^-6	0.014	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	25436983	3R_25436983_INS [dm3] 3R_29611261_INS [dm6]	C	CCGACTCAGGCGCAGATACA...	2.083e^-6	0.015	INTRON alph	TF binding site mE1_TFBS_chinmo
3R	25439910	3R_25439910_SNP [dm3] 3R_29614188_SNP [dm6]	A	T	2.083e^-6	0.015	INTRON alph
3R	25439940	3R_25439940_SNP [dm3] 3R_29614218_SNP [dm6]	T	C	2.083e^-6	0.015	INTRON alph
3R	25439973	3R_25439973_SNP [dm3] 3R_29614251_SNP [dm6]	A	G	2.083e^-6	0.015	INTRON alph
3R	6626947	3R_6626947_SNP [dm3] 3R_10801225_SNP [dm6]	T	C	2.103e^-6	0.015	INTRON CG14692	TF binding site mE1_TFBS_kn
3R	13760736	3R_13760736_SNP [dm3] 3R_17935014_SNP [dm6]	C	A	2.154e^-6	0.015	INTRON cpo	TF binding site mE1_TFBS_chinmo
2R	13365219	2R_13365219_SNP [dm3] 2R_17477714_SNP [dm6]	G	A	2.156e^-6	0.015	UTR_3_PRIME CG43110 UPSTREAM veil	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	22107518	2L_22107518_SNP [dm3] 2L_22107518_SNP [dm6]	A	G	2.168e^-6	0.015	UPSTREAM CG10834 INTERGENIC
3R	18169235	3R_18169235_SNP [dm3] 3R_22343513_SNP [dm6]	T	A	2.170e^-6	0.015	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	20896991	X_20896991_DEL [dm3] X_21025964_DEL [dm6]	ATACTTAAGTA...	A	2.171e^-6	0.015	UPSTREAM r-cup DOWNSTREAM CG1532 INTERGENIC
2R	18427773	2R_18427773_SNP [dm3] 2R_22540268_SNP [dm6]	G	A	2.179e^-6	0.015	INTRON px
X	18496291	X_18496291_SNP [dm3] X_18602258_SNP [dm6]	C	T	2.226e^-6	0.015	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	13831013	2R_13831013_SNP [dm3] 2R_17943508_SNP [dm6]	A	T	2.250e^-6	0.015	INTERGENIC
3R	17855968	3R_17855968_SNP [dm3] 3R_22030246_SNP [dm6]	G	T	2.272e^-6	0.015	SPLICE_SITE_REGION CG13409 SYNONYMOUS_CODING CG13409 DOWNSTREAM ND42	TF binding site mE1_TFBS_cad
3R	20427296	3R_20427296_SNP [dm3] 3R_24601574_SNP [dm6]	T	C	2.275e^-6	0.015	INTRON mld
3R	20427297	3R_20427297_SNP [dm3] 3R_24601575_SNP [dm6]	C	T	2.275e^-6	0.015	INTRON mld
X	19006471	X_19006471_SNP [dm3] X_19112438_SNP [dm6]	A	G	2.280e^-6	0.015	INTERGENIC
3L	10892323	3L_10892323_SNP [dm3] 3L_10899223_SNP [dm6]	C	T	2.284e^-6	0.015	UPSTREAM Aps INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16426826	2R_16426826_SNP [dm3] 2R_20539321_SNP [dm6]	C	T	2.293e^-6	0.015	UPSTREAM CG13427 DOWNSTREAM CG13428 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6854631	3L_6854631_SNP [dm3] 3L_6861531_SNP [dm6]	A	G	2.304e^-6	0.015	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10006695	2L_10006695_SNP [dm3] 2L_10006695_SNP [dm6]	A	C	2.330e^-6	0.015	INTRON CG4747	TF binding site mE1_TFBS_cad
3R	3171819	3R_3171819_DEL [dm3] 3R_7346097_DEL [dm6]	CAGCTCC	C	2.341e^-6	0.015	UPSTREAM nxf4	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	12956797	3R_12956797_SNP [dm3] 3R_17131075_SNP [dm6]	A	T	2.344e^-6	0.015	UPSTREAM CG17475 DOWNSTREAM CG4053 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	12956800	3R_12956800_SNP [dm3] 3R_17131078_SNP [dm6]	A	C	2.344e^-6	0.015	UPSTREAM CG17475 DOWNSTREAM CG4053 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	19900040	3R_19900040_SNP [dm3] 3R_24074318_SNP [dm6]	C	T	2.354e^-6	0.015	INTRON 4EHP
3R	12133451	3R_12133451_SNP [dm3] 3R_16307729_SNP [dm6]	G	A	2.378e^-6	0.015	INTRON Zip89B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7569711	2L_7569711_SNP [dm3] 2L_7569711_SNP [dm6]	G	C	2.397e^-6	0.015	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14780117	2R_14780117_SNP [dm3] 2R_18892612_SNP [dm6]	T	A	2.397e^-6	0.015	INTRON sano
3L	3702863	3L_3702863_SNP [dm3] 3L_3702863_SNP [dm6]	A	G	2.397e^-6	0.015	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5240674	3L_5240674_SNP [dm3] 3L_5247574_SNP [dm6]	G	A	2.397e^-6	0.015	UTR_5_PRIME shep INTRON shep
3L	5695696	3L_5695696_SNP [dm3] 3L_5702596_SNP [dm6]	G	A	2.397e^-6	0.015	INTRON sif
3R	25432763	3R_25432763_SNP [dm3] 3R_29607041_SNP [dm6]	C	G	2.429e^-6	0.015	INTRON alph
3R	12040860	3R_12040860_SNP [dm3] 3R_16215138_SNP [dm6]	G	T	2.435e^-6	0.015	DOWNSTREAM CR45641 INTERGENIC
3L	6006465	3L_6006465_SNP [dm3] 3L_6013365_SNP [dm6]	G	A	2.451e^-6	0.015	INTRON PVRAP
3L	6006523	3L_6006523_SNP [dm3] 3L_6013423_SNP [dm6]	G	A	2.451e^-6	0.015	INTRON PVRAP
3R	25440792	3R_25440792_SNP [dm3] 3R_29615070_SNP [dm6]	G	A	2.459e^-6	0.015	INTRON alph
3R	26760337	3R_26760337_SNP [dm3] 3R_30934615_SNP [dm6]	C	A	2.471e^-6	0.015	DOWNSTREAM CG15549 INTERGENIC
X	12483833	X_12483833_SNP [dm3] X_12589800_SNP [dm6]	T	A	2.523e^-6	0.016	UPSTREAM LIMK1 INTRON LIMK1
2R	18382883	2R_18382883_SNP [dm3] 2R_22495378_SNP [dm6]	G	A	2.544e^-6	0.016	UTR_3_PRIME px
3L	11853575	3L_11853575_SNP [dm3] 3L_11860475_SNP [dm6]	C	A	2.554e^-6	0.016	INTRON CG44837
2L	12177000	2L_12177000_SNP [dm3] 2L_12177000_SNP [dm6]	A	T	2.562e^-6	0.016	INTRON aret & 1 other
3L	5324991	3L_5324991_SNP [dm3] 3L_5331891_SNP [dm6]	T	C	2.575e^-6	0.016	INTERGENIC
3L	12246092	3L_12246092_SNP [dm3] 3L_12252992_SNP [dm6]	G	T	2.598e^-6	0.016	INTRON app
X	10529469	X_10529469_SNP [dm3] X_10635436_SNP [dm6]	A	T	2.598e^-6	0.016	INTRON X11Lbeta
3R	3570134	3R_3570134_SNP [dm3] 3R_7744412_SNP [dm6]	C	T	2.620e^-6	0.016	INTERGENIC
3L	6007987	3L_6007987_SNP [dm3] 3L_6014887_SNP [dm6]	A	G	2.648e^-6	0.016	INTRON PVRAP
3L	10622089	3L_10622089_SNP [dm3] 3L_10628989_SNP [dm6]	G	A	2.650e^-6	0.016	UPSTREAM CG14151 DOWNSTREAM CG42536 INTERGENIC
3R	18042088	3R_18042088_SNP [dm3] 3R_22216366_SNP [dm6]	C	T	2.655e^-6	0.016	SYNONYMOUS_CODING Gld2 INTRON SKIP	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	3686506	3L_3686506_DEL [dm3] 3L_3686506_DEL [dm6]	AACT	A	2.659e^-6	0.016	INTERGENIC
2L	9077613	2L_9077613_SNP [dm3] 2L_9077613_SNP [dm6]	G	A	2.669e^-6	0.016	SYNONYMOUS_CODING CG12439
2L	5380240	2L_5380240_SNP [dm3] 2L_5380240_SNP [dm6]	G	A	2.710e^-6	0.016	EXON CR42850	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15536789	2R_15536789_SNP [dm3] 2R_19649284_SNP [dm6]	G	A	2.738e^-6	0.016	INTERGENIC
2L	12168315	2L_12168315_SNP [dm3] 2L_12168315_SNP [dm6]	G	A	2.781e^-6	0.016	SYNONYMOUS_CODING CG31760
3R	4677035	3R_4677035_SNP [dm3] 3R_8851313_SNP [dm6]	A	T	2.787e^-6	0.016	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	10417140	3R_10417140_DEL [dm3] 3R_14591418_DEL [dm6]	TGGGATTTTTCGGT...	T	2.821e^-6	0.017	UPSTREAM stumps INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20893751	X_20893751_SNP [dm3] X_21022724_SNP [dm6]	T	A	2.829e^-6	0.017	DOWNSTREAM r-cup INTERGENIC
3R	26392405	3R_26392405_SNP [dm3] 3R_30566683_SNP [dm6]	G	A	2.830e^-6	0.017	INTRON tmod	TF binding site BDTNP1_TFBS_dl
2R	20403326	2R_20403326_SNP [dm3] 2R_24515803_SNP [dm6]	G	A	2.856e^-6	0.017	NON_SYNONYMOUS_CODING Ir60b UPSTREAM Letm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3L	3702799	3L_3702799_SNP [dm3] 3L_3702799_SNP [dm6]	T	C	2.874e^-6	0.017	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12956795	3R_12956795_SNP [dm3] 3R_17131073_SNP [dm6]	A	G	2.879e^-6	0.017	UPSTREAM CG17475 DOWNSTREAM CG4053 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25432685	3R_25432685_SNP [dm3] 3R_29606963_SNP [dm6]	C	A	2.944e^-6	0.017	INTRON alph
X	2515649	X_2515649_DEL [dm3] X_2621616_DEL [dm6]	ATGCCGACGA	A	3.018e^-6	0.017	DOWNSTREAM brv3	TF binding site mE1_TFBS_chinmo
3R	20829851	3R_20829851_SNP [dm3] 3R_25004129_SNP [dm6]	G	T	3.072e^-6	0.018	INTRON tnc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25440479	3R_25440479_SNP [dm3] 3R_29614757_SNP [dm6]	G	A	3.075e^-6	0.018	INTRON alph
X	3845828	X_3845828_SNP [dm3] X_3951795_SNP [dm6]	C	A	3.101e^-6	0.018	INTRON Vap-33A
3L	16873321	3L_16873321_SNP [dm3] 3L_16880221_SNP [dm6]	C	A	3.128e^-6	0.018	DOWNSTREAM CG32170 INTRON Lmpt
2R	17028611	2R_17028611_SNP [dm3] 2R_21141106_SNP [dm6]	G	A	3.151e^-6	0.018	INTRON Magi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	9485237	3L_9485237_SNP [dm3] 3L_9492137_SNP [dm6]	A	C	3.195e^-6	0.018	UTR_5_PRIME CG32037	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20805891	3R_20805891_SNP [dm3] 3R_24980169_SNP [dm6]	A	G	3.195e^-6	0.018	INTERGENIC
3L	12168845	3L_12168845_SNP [dm3] 3L_12175745_SNP [dm6]	G	T	3.266e^-6	0.018	UPSTREAM Rh7 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	11319781	3L_11319781_SNP [dm3] 3L_11326681_SNP [dm6]	C	T	3.274e^-6	0.018	INTERGENIC
2R	10740941	2R_10740941_SNP [dm3] 2R_14853436_SNP [dm6]	A	G	3.292e^-6	0.018	NON_SYNONYMOUS_CODING Ercc1 UPSTREAM SMC2 DOWNSTREAM Ciao1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_ttk
3L	12169948	3L_12169948_SNP [dm3] 3L_12176848_SNP [dm6]	G	A	3.295e^-6	0.018	UPSTREAM CAH2 INTERGENIC
2L	20974192	2L_20974192_SNP [dm3] 2L_20974192_SNP [dm6]	A	T	3.315e^-6	0.018	INTRON CG42238
2L	7940049	2L_7940049_SNP [dm3] 2L_7940049_SNP [dm6]	A	G	3.344e^-6	0.018	INTRON Snoo
2R	13540069	2R_13540069_SNP [dm3] 2R_17652564_SNP [dm6]	C	T	3.349e^-6	0.018	INTRON CCHa1-R
3L	16361942	3L_16361942_SNP [dm3] 3L_16368842_SNP [dm6]	G	A	3.355e^-6	0.018	SPLICE_SITE_REGION CG4842 UPSTREAM CG18814 INTRON CG4842
2L	15127322	2L_15127322_SNP [dm3] 2L_15127322_SNP [dm6]	C	T	3.375e^-6	0.019	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5625470	2R_5625470_SNP [dm3] 2R_9737965_SNP [dm6]	A	G	3.403e^-6	0.019	INTRON sqa
3L	6007988	3L_6007988_SNP [dm3] 3L_6014888_SNP [dm6]	T	A	3.425e^-6	0.019	INTRON PVRAP
3R	11007534	3R_11007534_SNP [dm3] 3R_15181812_SNP [dm6]	C	T	3.428e^-6	0.019	UPSTREAM Mf INTRON Gyc88E
3R	7301329	3R_7301329_SNP [dm3] 3R_11475607_SNP [dm6]	C	T	3.459e^-6	0.019	INTERGENIC	TF binding site mE1_TFBS_inv
2L	5890534	2L_5890534_SNP [dm3] 2L_5890534_SNP [dm6]	T	A	3.477e^-6	0.019	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5095282	2L_5095282_SNP [dm3] 2L_5095282_SNP [dm6]	C	T	3.480e^-6	0.019	UTR_3_PRIME CG5828 UPSTREAM CG4230	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	12169731	2L_12169731_SNP [dm3] 2L_12169731_SNP [dm6]	C	T	3.500e^-6	0.019	UTR_3_PRIME CG31760 UPSTREAM CG17217	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	19462601	3L_19462601_DEL [dm3] 3L_19469501_DEL [dm6]	AT	A	3.521e^-6	0.019	INTERGENIC	transposable element FlyBase
2L	7966865	2L_7966865_SNP [dm3] 2L_7966865_SNP [dm6]	A	G	3.590e^-6	0.019	INTRON Snoo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25176175	3R_25176175_SNP [dm3] 3R_29350453_SNP [dm6]	G	A	3.601e^-6	0.019	INTERGENIC
2L	12177489	2L_12177489_SNP [dm3] 2L_12177489_SNP [dm6]	C	G	3.615e^-6	0.019	INTRON aret & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	16878199	X_16878199_SNP [dm3] X_16984166_SNP [dm6]	A	T	3.616e^-6	0.019	INTRON CG45002
3R	21652654	3R_21652654_SNP [dm3] 3R_25826932_SNP [dm6]	A	C	3.641e^-6	0.019	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21652657	3R_21652657_SNP [dm3] 3R_25826935_SNP [dm6]	G	T	3.641e^-6	0.019	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21652666	3R_21652666_SNP [dm3] 3R_25826944_SNP [dm6]	T	G	3.641e^-6	0.019	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25433977	3R_25433977_SNP [dm3] 3R_29608255_SNP [dm6]	G	T	3.644e^-6	0.019	UPSTREAM Diedel2 INTRON alph
3R	10199609	3R_10199609_SNP [dm3] 3R_14373887_SNP [dm6]	G	T	3.656e^-6	0.019	UPSTREAM NK7.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10924016	3L_10924016_SNP [dm3] 3L_10930916_SNP [dm6]	C	T	3.676e^-6	0.019	INTERGENIC
2R	17028286	2R_17028286_SNP [dm3] 2R_21140781_SNP [dm6]	C	A	3.683e^-6	0.019	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
X	15101247	X_15101247_SNP [dm3] X_15207214_SNP [dm6]	G	A	3.700e^-6	0.019	UPSTREAM CG32588 INTERGENIC
3L	7929164	3L_7929164_DEL [dm3] 3L_7936064_DEL [dm6]	CTT	C	3.703e^-6	0.019	UTR_5_PRIME syd UPSTREAM Srp9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	25519959	3R_25519959_SNP [dm3] 3R_29694237_SNP [dm6]	G	T	3.728e^-6	0.019	INTRON dmrt99B
X	2756283	X_2756283_SNP [dm3] X_2862250_SNP [dm6]	A	G	3.751e^-6	0.019	INTRON kirre
2R	8915141	2R_8915141_SNP [dm3] 2R_13027636_SNP [dm6]	C	A	3.780e^-6	0.019	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10508715	3L_10508715_SNP [dm3] 3L_10515615_SNP [dm6]	C	T	3.796e^-6	0.019	UPSTREAM A2bp1 INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	19958062	2R_19958062_SNP [dm3] 2R_24070539_SNP [dm6]	A	G	3.842e^-6	0.02	INTRON CG3209	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19958064	2R_19958064_SNP [dm3] 2R_24070541_SNP [dm6]	G	C	3.842e^-6	0.02	INTRON CG3209	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11320172	3L_11320172_SNP [dm3] 3L_11327072_SNP [dm6]	A	T	3.896e^-6	0.02	INTERGENIC
2R	4030601	2R_4030601_SNP [dm3] 2R_8143096_SNP [dm6]	C	T	3.912e^-6	0.02	UPSTREAM Lpin INTRON Lpin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7824614	2R_7824614_DEL [dm3] 2R_11937109_DEL [dm6]	ATTCAA	A	3.934e^-6	0.02	INTERGENIC
3L	14706925	3L_14706925_SNP [dm3] 3L_14713825_SNP [dm6]	G	A	3.942e^-6	0.02	INTRON ome
3L	1339232	3L_1339232_SNP [dm3] 3L_1339232_SNP [dm6]	C	A	3.964e^-6	0.02	UTR_3_PRIME l_3_02640 DOWNSTREAM CG2199
2R	10008006	2R_10008006_SNP [dm3] 2R_14120501_SNP [dm6]	A	G	3.984e^-6	0.02	INTRON Prosap	TF binding site BDTNP1_TFBS_prd
3L	11319877	3L_11319877_SNP [dm3] 3L_11326777_SNP [dm6]	T	C	3.991e^-6	0.02	INTERGENIC
3L	902356	3L_902356_SNP [dm3] 3L_902356_SNP [dm6]	T	G	4.002e^-6	0.02	UPSTREAM CG13905 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	13026115	X_13026115_SNP [dm3] X_13132082_SNP [dm6]	T	G	4.018e^-6	0.02	INTRON MFS10 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	14654360	3L_14654360_SNP [dm3] 3L_14661260_SNP [dm6]	A	T	4.062e^-6	0.02	INTRON dlp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	11320168	3L_11320168_SNP [dm3] 3L_11327068_SNP [dm6]	A	G	4.063e^-6	0.02	INTERGENIC
2L	10181386	2L_10181386_SNP [dm3] 2L_10181386_SNP [dm6]	A	T	4.068e^-6	0.02	INTERGENIC	TF binding site mE1_TFBS_inv
3R	11964081	3R_11964081_SNP [dm3] 3R_16138359_SNP [dm6]	A	G	4.178e^-6	0.021	INTRON Sb	TF binding site mE1_TFBS_inv
3R	15501553	3R_15501553_SNP [dm3] 3R_19675831_SNP [dm6]	T	C	4.210e^-6	0.021	INTRON Naam
2L	15337443	2L_15337443_SNP [dm3] 2L_15337443_SNP [dm6]	T	A	4.263e^-6	0.021	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9104752	2L_9104752_SNP [dm3] 2L_9104752_SNP [dm6]	C	T	4.351e^-6	0.021	INTERGENIC
2L	2865463	2L_2865463_SNP [dm3] 2L_2865463_SNP [dm6]	C	G	4.415e^-6	0.021	INTRON CG2991	TF binding site BDTNP1_TFBS_da
3R	4947251	3R_4947251_SNP [dm3] 3R_9121529_SNP [dm6]	G	T	4.453e^-6	0.022	INTRON pum
3R	12790362	3R_12790362_DEL [dm3] 3R_16964640_DEL [dm6]	TACGAGCCAATAATT...	T	4.454e^-6	0.022	UPSTREAM Abd-B INTRON Abd-B
2R	10740421	2R_10740421_SNP [dm3] 2R_14852916_SNP [dm6]	A	G	4.494e^-6	0.022	UPSTREAM Ercc1 & 1 other DOWNSTREAM Ciao1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	16873249	3L_16873249_SNP [dm3] 3L_16880149_SNP [dm6]	G	T	4.526e^-6	0.022	DOWNSTREAM CG32170 INTRON Lmpt
3R	25475971	3R_25475971_SNP [dm3] 3R_29650249_SNP [dm6]	C	A	4.531e^-6	0.022	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
2R	18426829	2R_18426829_SNP [dm3] 2R_22539324_SNP [dm6]	G	A	4.547e^-6	0.022	INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12260478	3L_12260478_SNP [dm3] 3L_12267378_SNP [dm6]	C	T	4.605e^-6	0.022	UPSTREAM CG32100 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	13208994	2L_13208994_SNP [dm3] 2L_13208994_SNP [dm6]	G	A	4.651e^-6	0.022	INTRON Pect
3L	6917271	3L_6917271_SNP [dm3] 3L_6924171_SNP [dm6]	G	T	4.678e^-6	0.022	INTERGENIC
3L	12870339	3L_12870339_SNP [dm3] 3L_12877239_SNP [dm6]	A	G	4.706e^-6	0.022	INTERGENIC
2R	13681580	2R_13681580_SNP [dm3] 2R_17794075_SNP [dm6]	T	C	4.784e^-6	0.023	UTR_5_PRIME Dhit	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	4030629	2R_4030629_SNP [dm3] 2R_8143124_SNP [dm6]	A	C	4.828e^-6	0.023	UPSTREAM Lpin INTRON Lpin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16873394	3L_16873394_SNP [dm3] 3L_16880294_SNP [dm6]	A	G	4.830e^-6	0.023	DOWNSTREAM CG32170 INTRON Lmpt
X	5326112	X_5326112_SNP [dm3] X_5432079_SNP [dm6]	C	T	4.835e^-6	0.023	NON_SYNONYMOUS_CODING CG15784	TF binding site mE1_TFBS_chinmo
X	5326116	X_5326116_SNP [dm3] X_5432083_SNP [dm6]	T	C	4.835e^-6	0.023	SYNONYMOUS_CODING CG15784	TF binding site mE1_TFBS_chinmo
2L	1120154	2L_1120154_SNP [dm3] 2L_1120154_SNP [dm6]	C	T	4.848e^-6	0.023	INTRON Pino	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5797418	2L_5797418_SNP [dm3] 2L_5797418_SNP [dm6]	T	A	4.931e^-6	0.023	INTRON CG9171
2L	9094748	2L_9094748_SNP [dm3] 2L_9094748_SNP [dm6]	G	A	4.938e^-6	0.023	INTERGENIC
2L	9094835	2L_9094835_SNP [dm3] 2L_9094835_SNP [dm6]	C	T	4.938e^-6	0.023	INTERGENIC
3L	16873340	3L_16873340_SNP [dm3] 3L_16880240_SNP [dm6]	G	T	4.983e^-6	0.023	DOWNSTREAM CG32170 INTRON Lmpt
3R	12130312	3R_12130312_SNP [dm3] 3R_16304590_SNP [dm6]	A	T	5.029e^-6	0.023	UTR_3_PRIME gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	11333157	X_11333157_SNP [dm3] X_11439124_SNP [dm6]	A	G	5.054e^-6	0.023	INTRON Evi5
3R	9866266	3R_9866266_SNP [dm3] 3R_14040544_SNP [dm6]	A	T	5.082e^-6	0.023	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9866272	3R_9866272_SNP [dm3] 3R_14040550_SNP [dm6]	A	T	5.082e^-6	0.023	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3980906	3L_3980906_INS [dm3] 3L_3980906_INS [dm6]	A	ACATATATCAAATAAAATCA...	5.112e^-6	0.023	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	17478318	2L_17478318_SNP [dm3] 2L_17478318_SNP [dm6]	C	G	5.134e^-6	0.023	UPSTREAM Aac11 DOWNSTREAM fws INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10967297	3R_10967297_SNP [dm3] 3R_15141575_SNP [dm6]	G	C	5.147e^-6	0.023	UTR_3_PRIME CG3987 DOWNSTREAM GlyS	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10850816	X_10850816_SNP [dm3] X_10956783_SNP [dm6]	T	C	5.149e^-6	0.023	INTRON Myo10A
X	10850830	X_10850830_SNP [dm3] X_10956797_SNP [dm6]	C	T	5.149e^-6	0.023	INTRON Myo10A
X	10851671	X_10851671_SNP [dm3] X_10957638_SNP [dm6]	G	A	5.149e^-6	0.023	INTRON Myo10A
X	10851697	X_10851697_SNP [dm3] X_10957664_SNP [dm6]	G	A	5.149e^-6	0.023	INTRON Myo10A
X	10851924	X_10851924_SNP [dm3] X_10957891_SNP [dm6]	A	T	5.149e^-6	0.023	INTRON Myo10A
2L	4916296	2L_4916296_SNP [dm3] 2L_4916296_SNP [dm6]	C	A	5.195e^-6	0.023	UPSTREAM hoe1 INTRON hoe1
2L	22107489	2L_22107489_MNP [dm3] 2L_22107489_MNP [dm6]	GAT	TCG	5.319e^-6	0.024	UPSTREAM CG10834 INTERGENIC
3R	4941770	3R_4941770_SNP [dm3] 3R_9116048_SNP [dm6]	C	T	5.342e^-6	0.024	INTRON pum
3L	5327017	3L_5327017_SNP [dm3] 3L_5333917_SNP [dm6]	T	G	5.350e^-6	0.024	UPSTREAM CR45742 INTERGENIC
2L	2299328	2L_2299328_SNP [dm3] 2L_2299328_SNP [dm6]	G	C	5.367e^-6	0.024	UPSTREAM CG31949 INTERGENIC
3L	6817217	3L_6817217_SNP [dm3] 3L_6824117_SNP [dm6]	T	C	5.374e^-6	0.024	INTERGENIC	regulatory region REDfly_CRMs
3L	6817620	3L_6817620_SNP [dm3] 3L_6824520_SNP [dm6]	G	A	5.374e^-6	0.024	INTERGENIC	regulatory region REDfly_CRMs
2L	16043721	2L_16043721_SNP [dm3] 2L_16043721_SNP [dm6]	T	C	5.453e^-6	0.024	UPSTREAM BicC INTRON BicC & 1 other
2L	9092410	2L_9092410_SNP [dm3] 2L_9092410_SNP [dm6]	A	C	5.516e^-6	0.024	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
2L	5522999	2L_5522999_DEL [dm3] 2L_5522999_DEL [dm6]	AA	C	5.610e^-6	0.025	INTRON CG7371	TF binding site mE1_TFBS_sens
3R	21808358	3R_21808358_SNP [dm3] 3R_25982636_SNP [dm6]	T	A	5.660e^-6	0.025	UTR_3_PRIME CG42261 UPSTREAM Nf1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14242449	3L_14242449_SNP [dm3] 3L_14249349_SNP [dm6]	T	C	5.711e^-6	0.025	INTERGENIC
3L	902353	3L_902353_SNP [dm3] 3L_902353_SNP [dm6]	G	T	5.729e^-6	0.025	UPSTREAM CG13905 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	12873545	X_12873545_SNP [dm3] X_12979512_SNP [dm6]	A	C	5.776e^-6	0.025	INTERGENIC
3L	11319783	3L_11319783_SNP [dm3] 3L_11326683_SNP [dm6]	A	G	5.813e^-6	0.025	INTERGENIC
3R	14373539	3R_14373539_SNP [dm3] 3R_18547817_SNP [dm6]	T	A	5.823e^-6	0.025	INTERGENIC
2L	12194629	2L_12194629_SNP [dm3] 2L_12194629_SNP [dm6]	C	G	5.831e^-6	0.025	INTRON aret
2L	12194630	2L_12194630_SNP [dm3] 2L_12194630_SNP [dm6]	A	C	5.831e^-6	0.025	INTRON aret
2L	21111768	2L_21111768_SNP [dm3] 2L_21111768_SNP [dm6]	G	A	5.859e^-6	0.025	INTRON Nhe2
2L	9086636	2L_9086636_SNP [dm3] 2L_9086636_SNP [dm6]	A	T	5.876e^-6	0.025	SYNONYMOUS_CODING Toll-4
X	6516856	X_6516856_SNP [dm3] X_6622823_SNP [dm6]	T	C	5.888e^-6	0.025	INTRON pigs	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9091719	2L_9091719_SNP [dm3] 2L_9091719_SNP [dm6]	G	A	5.928e^-6	0.025	INTERGENIC
3L	9815339	3L_9815339_INS [dm3] 3L_9822239_INS [dm6]	A	AA	5.949e^-6	0.025	INTRON CG43897
2L	4164599	2L_4164599_SNP [dm3] 2L_4164599_SNP [dm6]	T	A	6.037e^-6	0.026	DOWNSTREAM Or24a INTERGENIC
3L	5782676	3L_5782676_SNP [dm3] 3L_5789576_SNP [dm6]	G	A	6.041e^-6	0.026	DOWNSTREAM Bre1 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	15310397	3L_15310397_SNP [dm3] 3L_15317297_SNP [dm6]	T	C	6.086e^-6	0.026	INTERGENIC
2R	17109562	2R_17109562_SNP [dm3] 2R_21222057_SNP [dm6]	G	A	6.151e^-6	0.026	INTRON ASPP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16751244	2R_16751244_SNP [dm3] 2R_20863739_SNP [dm6]	T	G	6.201e^-6	0.026	UPSTREAM CG15227 INTERGENIC
3L	16751232	3L_16751232_SNP [dm3] 3L_16758132_SNP [dm6]	A	T	6.234e^-6	0.026	INTERGENIC
3L	14802341	3L_14802341_DEL [dm3] 3L_14809241_DEL [dm6]	GATGTGGGAAATTTAGCCTT...	G	6.300e^-6	0.026	INTRON CG17839
X	10851609	X_10851609_SNP [dm3] X_10957576_SNP [dm6]	A	T	6.307e^-6	0.026	INTRON Myo10A
3L	10890072	3L_10890072_SNP [dm3] 3L_10896972_SNP [dm6]	C	A	6.320e^-6	0.026	INTRON Aps
X	18690141	X_18690141_SNP [dm3] X_18796108_SNP [dm6]	C	T	6.412e^-6	0.027	SYNONYMOUS_CODING bnb INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2299374	2L_2299374_DEL [dm3] 2L_2299374_DEL [dm6]	TACAT	T	6.437e^-6	0.027	UPSTREAM CG31949 INTERGENIC
2L	7018087	2L_7018087_SNP [dm3] 2L_7018087_SNP [dm6]	A	C	6.479e^-6	0.027	UTR_3_PRIME ade3 INTRON ade3	TF binding site mE1_TFBS_chinmo
2R	18900128	2R_18900128_SNP [dm3] 2R_23012605_SNP [dm6]	T	C	6.548e^-6	0.027	NON_SYNONYMOUS_CODING CG42741 INTRON twi	TF binding site mE1_TFBS_chinmo
2L	5160101	2L_5160101_SNP [dm3] 2L_5160101_SNP [dm6]	G	A	6.579e^-6	0.027	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_sens
2R	10054460	2R_10054460_SNP [dm3] 2R_14166955_SNP [dm6]	G	A	6.686e^-6	0.027	UTR_3_PRIME CG8323 UPSTREAM CG18327	TF binding site mE1_TFBS_chinmo
3L	4275939	3L_4275939_SNP [dm3] 3L_4275939_SNP [dm6]	A	G	6.726e^-6	0.028	SYNONYMOUS_CODING CG1273
2L	10627063	2L_10627063_INS [dm3] 2L_10627063_INS [dm6]	T	TAT	6.760e^-6	0.028	UTR_3_PRIME Trim9
2L	10782915	2L_10782915_SNP [dm3] 2L_10782915_SNP [dm6]	G	A	6.814e^-6	0.028	INTRON CG31869
2R	16429924	2R_16429924_SNP [dm3] 2R_20542419_SNP [dm6]	A	G	6.824e^-6	0.028	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20726654	3L_20726654_INS [dm3] 3L_20733554_INS [dm6]	G	AAGA	6.827e^-6	0.028	INTRON CG13252
2L	2293520	2L_2293520_DEL [dm3] 2L_2293520_DEL [dm6]	TTGGCAAGGGAAG...	T	6.844e^-6	0.028	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11319778	3L_11319778_SNP [dm3] 3L_11326678_SNP [dm6]	T	C	6.889e^-6	0.028	INTERGENIC
3R	26083748	3R_26083748_SNP [dm3] 3R_30258026_SNP [dm6]	A	G	7.001e^-6	0.028	INTERGENIC
3R	20977456	3R_20977456_SNP [dm3] 3R_25151734_SNP [dm6]	T	A	7.081e^-6	0.029	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12945803	2L_12945803_SNP [dm3] 2L_12945803_SNP [dm6]	C	T	7.094e^-6	0.029	INTERGENIC
3R	20977622	3R_20977622_SNP [dm3] 3R_25151900_SNP [dm6]	A	T	7.133e^-6	0.029	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3243990	2R_3243990_SNP [dm3] 2R_7356485_SNP [dm6]	G	A	7.161e^-6	0.029	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16235308	2L_16235308_SNP [dm3] 2L_16235308_SNP [dm6]	C	T	7.228e^-6	0.029	INTRON CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	584447	3L_584447_SNP [dm3] 3L_584447_SNP [dm6]	G	A	7.228e^-6	0.029	INTRON Kah	TF binding site mE1_TFBS_chinmo
2L	12167511	2L_12167511_SNP [dm3] 2L_12167511_SNP [dm6]	T	C	7.251e^-6	0.029	DOWNSTREAM ZnT33D INTRON CG31760
3L	3637367	3L_3637367_SNP [dm3] 3L_3637367_SNP [dm6]	A	T	7.264e^-6	0.029	INTRON dar1
2L	84971	2L_84971_SNP [dm3] 2L_84971_SNP [dm6]	C	T	7.306e^-6	0.029	INTRON net
2L	84988	2L_84988_SNP [dm3] 2L_84988_SNP [dm6]	A	T	7.306e^-6	0.029	INTRON net
3L	10876994	3L_10876994_SNP [dm3] 3L_10883894_SNP [dm6]	A	G	7.366e^-6	0.029	DOWNSTREAM CG6404 & 1 other INTERGENIC
3R	17264112	3R_17264112_INS [dm3] 3R_21438390_INS [dm6]	T	TC	7.394e^-6	0.029	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	19326498	2R_19326498_SNP [dm3] 2R_23438975_SNP [dm6]	T	G	7.442e^-6	0.029	DOWNSTREAM Or59a INTERGENIC
2L	2516015	2L_2516015_SNP [dm3] 2L_2516015_SNP [dm6]	G	T	7.445e^-6	0.029	INTERGENIC
3L	18223546	3L_18223546_DEL [dm3] 3L_18230446_DEL [dm6]	TT	T	7.450e^-6	0.029	INTERGENIC
X	12894132	X_12894132_SNP [dm3] X_13000099_SNP [dm6]	C	T	7.450e^-6	0.029	INTRON rad
2L	20405622	2L_20405622_SNP [dm3] 2L_20405622_SNP [dm6]	C	T	7.540e^-6	0.029	INTRON CG10947
2L	20405631	2L_20405631_SNP [dm3] 2L_20405631_SNP [dm6]	T	A	7.540e^-6	0.029	INTRON CG10947
2L	20405673	2L_20405673_SNP [dm3] 2L_20405673_SNP [dm6]	T	G	7.540e^-6	0.029	INTRON CG10947
2R	10040410	2R_10040410_SNP [dm3] 2R_14152905_SNP [dm6]	G	C	7.571e^-6	0.029	NON_SYNONYMOUS_CODING Rcd1 UPSTREAM pea & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
2R	10046439	2R_10046439_SNP [dm3] 2R_14158934_SNP [dm6]	A	G	7.571e^-6	0.029	NON_SYNONYMOUS_CODING CG13016 DOWNSTREAM CG8257
2R	10051062	2R_10051062_SNP [dm3] 2R_14163557_SNP [dm6]	A	G	7.571e^-6	0.029	SYNONYMOUS_CODING Tango7 DOWNSTREAM O-fut1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	10053364	2R_10053364_SNP [dm3] 2R_14165859_SNP [dm6]	A	T	7.571e^-6	0.029	INTRON CG8323
2R	10058689	2R_10058689_SNP [dm3] 2R_14171184_SNP [dm6]	G	T	7.571e^-6	0.029	UTR_5_PRIME CG8331 UPSTREAM CR44368 & 1 other DOWNSTREAM CG18324 INTRON CG8331	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2965277	2R_2965277_SNP [dm3] 2R_7077772_SNP [dm6]	G	A	7.575e^-6	0.029	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17030539	2R_17030539_SNP [dm3] 2R_21143034_SNP [dm6]	A	T	7.602e^-6	0.029	SYNONYMOUS_CODING CG9406 UPSTREAM Magi & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	9089673	2L_9089673_SNP [dm3] 2L_9089673_SNP [dm6]	A	T	7.626e^-6	0.029	DOWNSTREAM Toll-4 INTERGENIC
2L	15096143	2L_15096143_DEL [dm3] 2L_15096143_DEL [dm6]	CA	G	7.646e^-6	0.029	UTR_3_PRIME CG15270
2R	19510502	2R_19510502_SNP [dm3] 2R_23622979_SNP [dm6]	T	C	7.646e^-6	0.029	INTERGENIC
2R	13404684	2R_13404684_SNP [dm3] 2R_17517179_SNP [dm6]	C	G	7.745e^-6	0.029	UTR_3_PRIME CG4853 DOWNSTREAM APC10
3R	20426708	3R_20426708_SNP [dm3] 3R_24600986_SNP [dm6]	G	A	7.762e^-6	0.029	INTRON mld	TF binding site mE1_TFBS_HSA
3R	14373520	3R_14373520_SNP [dm3] 3R_18547798_SNP [dm6]	T	C	7.795e^-6	0.029	INTERGENIC
3R	14373536	3R_14373536_SNP [dm3] 3R_18547814_SNP [dm6]	T	A	7.795e^-6	0.029	INTERGENIC
3R	17986081	3R_17986081_SNP [dm3] 3R_22160359_SNP [dm6]	A	G	7.980e^-6	0.03	INTRON SKIP	TF binding site mE1_TFBS_Kr
3R	20354693	3R_20354693_SNP [dm3] 3R_24528971_SNP [dm6]	C	T	7.997e^-6	0.03	DOWNSTREAM CG13623 INTRON CG6607	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11114203	3L_11114203_SNP [dm3] 3L_11121103_SNP [dm6]	A	G	7.999e^-6	0.03	NON_SYNONYMOUS_CODING mRpL2 UPSTREAM fd68A DOWNSTREAM Ufd1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11477815	2L_11477815_SNP [dm3] 2L_11477815_SNP [dm6]	T	A	8.025e^-6	0.03	INTERGENIC
2L	12238271	2L_12238271_SNP [dm3] 2L_12238271_SNP [dm6]	C	G	8.110e^-6	0.03	INTRON aret
3R	26485984	3R_26485984_SNP [dm3] 3R_30660262_SNP [dm6]	A	C	8.158e^-6	0.03	INTERGENIC
3R	6135772	3R_6135772_SNP [dm3] 3R_10310050_SNP [dm6]	C	T	8.183e^-6	0.03	NON_SYNONYMOUS_CODING CG6293	TF binding site mE1_TFBS_cad
X	12483840	X_12483840_SNP [dm3] X_12589807_SNP [dm6]	A	G	8.187e^-6	0.03	UPSTREAM LIMK1 INTRON LIMK1
3R	19737651	3R_19737651_SNP [dm3] 3R_23911929_SNP [dm6]	T	C	8.192e^-6	0.03	INTRON sba
3R	13122954	3R_13122954_SNP [dm3] 3R_17297232_SNP [dm6]	T	A	8.217e^-6	0.03	INTERGENIC
3L	16751236	3L_16751236_SNP [dm3] 3L_16758136_SNP [dm6]	A	G	8.243e^-6	0.03	INTERGENIC
2R	9641564	2R_9641564_SNP [dm3] 2R_13754059_SNP [dm6]	G	T	8.261e^-6	0.03	UTR_5_PRIME CG6280
3R	20246500	3R_20246500_SNP [dm3] 3R_24420778_SNP [dm6]	A	G	8.324e^-6	0.031	INTRON nAChRalpha1
2L	9089690	2L_9089690_SNP [dm3] 2L_9089690_SNP [dm6]	G	T	8.424e^-6	0.031	DOWNSTREAM Toll-4 INTERGENIC
2L	5869998	2L_5869998_SNP [dm3] 2L_5869998_SNP [dm6]	C	G	8.507e^-6	0.031	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	5870047	2L_5870047_SNP [dm3] 2L_5870047_SNP [dm6]	G	T	8.507e^-6	0.031	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	9446436	2L_9446436_SNP [dm3] 2L_9446436_SNP [dm6]	C	T	8.517e^-6	0.031	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2R	4226999	2R_4226999_SNP [dm3] 2R_8339494_SNP [dm6]	T	C	8.562e^-6	0.031	INTRON pdm3
2R	4227075	2R_4227075_SNP [dm3] 2R_8339570_SNP [dm6]	A	G	8.562e^-6	0.031	INTRON pdm3
2R	4227337	2R_4227337_SNP [dm3] 2R_8339832_SNP [dm6]	T	C	8.562e^-6	0.031	INTRON pdm3	TF binding site mE1_TFBS_cad
X	9685378	X_9685378_SNP [dm3] X_9791345_SNP [dm6]	C	T	8.569e^-6	0.031	INTRON CG32698
3L	6817213	3L_6817213_SNP [dm3] 3L_6824113_SNP [dm6]	G	C	8.587e^-6	0.031	INTERGENIC	regulatory region REDfly_CRMs
2L	8371361	2L_8371361_SNP [dm3] 2L_8371361_SNP [dm6]	G	A	8.752e^-6	0.031	UPSTREAM CR45341 INTRON CG17292
2L	8372703	2L_8372703_SNP [dm3] 2L_8372703_SNP [dm6]	C	T	8.752e^-6	0.031	SYNONYMOUS_CODING CG17292
2L	8377699	2L_8377699_SNP [dm3] 2L_8377699_SNP [dm6]	G	A	8.752e^-6	0.031	NON_SYNONYMOUS_CODING CG17294 UPSTREAM CG13390 DOWNSTREAM Aats-ala	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7939531	2L_7939531_SNP [dm3] 2L_7939531_SNP [dm6]	C	T	8.775e^-6	0.031	INTRON Snoo
2R	16224430	2R_16224430_DEL [dm3] 2R_20336925_DEL [dm6]	CTC	C	8.810e^-6	0.031	INTERGENIC
3L	10679563	3L_10679563_SNP [dm3] 3L_10686463_SNP [dm6]	C	A	8.829e^-6	0.031	INTRON simj
2R	7824631	2R_7824631_SNP [dm3] 2R_11937126_SNP [dm6]	T	C	8.904e^-6	0.032	INTERGENIC
3L	12170077	3L_12170077_SNP [dm3] 3L_12176977_SNP [dm6]	T	A	8.964e^-6	0.032	UPSTREAM CAH2 INTERGENIC
2L	9125307	2L_9125307_SNP [dm3] 2L_9125307_SNP [dm6]	C	A	8.980e^-6	0.032	UPSTREAM CG32982 DOWNSTREAM CR44615 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	10886550	3L_10886550_SNP [dm3] 3L_10893450_SNP [dm6]	T	G	8.983e^-6	0.032	UPSTREAM Cpr67Fb DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
3R	25425872	3R_25425872_SNP [dm3] 3R_29600150_SNP [dm6]	G	C	8.993e^-6	0.032	SYNONYMOUS_CODING CG7568 DOWNSTREAM alph INTRON alph
3R	25426517	3R_25426517_DEL [dm3] 3R_29600795_DEL [dm6]	TA	T	8.993e^-6	0.032	INTRON alph & 1 other
3R	25426591	3R_25426591_SNP [dm3] 3R_29600869_SNP [dm6]	G	A	8.993e^-6	0.032	UPSTREAM CG7568 INTRON alph
2L	20405662	2L_20405662_SNP [dm3] 2L_20405662_SNP [dm6]	A	G	8.995e^-6	0.032	INTRON CG10947
2L	14975707	2L_14975707_SNP [dm3] 2L_14975707_SNP [dm6]	C	T	9.014e^-6	0.032	DOWNSTREAM mol & 1 other INTERGENIC
2R	5873205	2R_5873205_SNP [dm3] 2R_9985700_SNP [dm6]	G	C	9.118e^-6	0.032	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11813653	3R_11813653_SNP [dm3] 3R_15987931_SNP [dm6]	C	A	9.140e^-6	0.032	INTRON srp & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15172315	2L_15172315_SNP [dm3] 2L_15172315_SNP [dm6]	A	G	9.273e^-6	0.032	INTRON CG4168
X	6517557	X_6517557_SNP [dm3] X_6623524_SNP [dm6]	C	A	9.371e^-6	0.033	INTRON pigs
2R	3735400	2R_3735400_SNP [dm3] 2R_7847895_SNP [dm6]	A	T	9.412e^-6	0.033	UPSTREAM Dgk INTRON Dgk
2R	3735402	2R_3735402_SNP [dm3] 2R_7847897_SNP [dm6]	T	G	9.412e^-6	0.033	UPSTREAM Dgk INTRON Dgk
X	1317328	X_1317328_SNP [dm3] X_1423295_SNP [dm6]	A	C	9.447e^-6	0.033	INTRON futsch
3L	7766459	3L_7766459_SNP [dm3] 3L_7773359_SNP [dm6]	A	T	9.461e^-6	0.033	INTRON Clk	regulatory region REDfly_CRMs
3R	20422142	3R_20422142_SNP [dm3] 3R_24596420_SNP [dm6]	C	T	9.470e^-6	0.033	INTRON mld
3R	20422146	3R_20422146_SNP [dm3] 3R_24596424_SNP [dm6]	A	T	9.470e^-6	0.033	INTRON mld
2L	992670	2L_992670_DEL [dm3] 2L_992670_DEL [dm6]	AACAGTGGA	A	9.502e^-6	0.033	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	14373544	3R_14373544_SNP [dm3] 3R_18547822_SNP [dm6]	T	A	9.598e^-6	0.033	INTERGENIC
3R	20426752	3R_20426752_SNP [dm3] 3R_24601030_SNP [dm6]	A	G	9.664e^-6	0.033	INTRON mld	TF binding site mE1_TFBS_HSA
3L	18223550	3L_18223550_SNP [dm3] 3L_18230450_SNP [dm6]	G	T	9.693e^-6	0.033	INTERGENIC
3L	18223553	3L_18223553_SNP [dm3] 3L_18230453_SNP [dm6]	T	A	9.693e^-6	0.033	INTERGENIC
3L	18171655	3L_18171655_SNP [dm3] 3L_18178555_SNP [dm6]	T	C	9.757e^-6	0.033	INTRON W
2R	10525592	2R_10525592_SNP [dm3] 2R_14638087_SNP [dm6]	T	C	9.825e^-6	0.033	UPSTREAM CG43236 INTERGENIC
X	14043548	X_14043548_SNP [dm3] X_14149515_SNP [dm6]	C	G	9.836e^-6	0.033	INTERGENIC
2L	9101433	2L_9101433_SNP [dm3] 2L_9101433_SNP [dm6]	G	A	9.837e^-6	0.033	INTERGENIC
3L	2715127	3L_2715127_SNP [dm3] 3L_2715127_SNP [dm6]	T	A	9.907e^-6	0.033	INTERGENIC
3R	4707402	3R_4707402_SNP [dm3] 3R_8881680_SNP [dm6]	T	G	9.922e^-6	0.033	INTRON pyd
X	12873727	X_12873727_SNP [dm3] X_12979694_SNP [dm6]	A	T	9.967e^-6	0.034	INTERGENIC
2L	9125337	2L_9125337_SNP [dm3] 2L_9125337_SNP [dm6]	C	T	1.002e^-5	0.034	UPSTREAM CG32982 DOWNSTREAM CR44615 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	9089552	2L_9089552_SNP [dm3] 2L_9089552_SNP [dm6]	C	T	1.013e^-5	0.034	DOWNSTREAM Toll-4 INTERGENIC
2L	15209764	2L_15209764_SNP [dm3] 2L_15209764_SNP [dm6]	G	T	1.025e^-5	0.034	DOWNSTREAM CR44196 INTERGENIC
2L	6830360	2L_6830360_SNP [dm3] 2L_6830360_SNP [dm6]	G	A	1.026e^-5	0.034	INTRON sens-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8546325	3R_8546325_SNP [dm3] 3R_12720603_SNP [dm6]	T	G	1.028e^-5	0.034	UPSTREAM Men INTRON Men	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21652691	3R_21652691_SNP [dm3] 3R_25826969_SNP [dm6]	C	T	1.029e^-5	0.034	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15101072	X_15101072_SNP [dm3] X_15207039_SNP [dm6]	G	A	1.031e^-5	0.034	UPSTREAM CG32588 INTERGENIC
2L	6005113	2L_6005113_SNP [dm3] 2L_6005113_SNP [dm6]	C	T	1.036e^-5	0.034	SYNONYMOUS_CODING Gal EXON CR43866	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17779523	2R_17779523_SNP [dm3] 2R_21892018_SNP [dm6]	A	T	1.038e^-5	0.034	INTRON Fili	TF binding site BDTNP1_TFBS_twi
3L	901842	3L_901842_SNP [dm3] 3L_901842_SNP [dm6]	C	G	1.039e^-5	0.034	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	21744628	2L_21744628_SNP [dm3] 2L_21744628_SNP [dm6]	A	C	1.044e^-5	0.034	INTRON step	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	14338721	3L_14338721_SNP [dm3] 3L_14345621_SNP [dm6]	A	G	1.048e^-5	0.035	INTRON fz
2L	12193076	2L_12193076_SNP [dm3] 2L_12193076_SNP [dm6]	G	A	1.051e^-5	0.035	INTRON aret
3R	14373524	3R_14373524_SNP [dm3] 3R_18547802_SNP [dm6]	T	C	1.052e^-5	0.035	INTERGENIC
3R	26590068	3R_26590068_SNP [dm3] 3R_30764346_SNP [dm6]	C	A	1.056e^-5	0.035	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9094755	2L_9094755_DEL [dm3] 2L_9094755_DEL [dm6]	GTGT	C	1.064e^-5	0.035	INTERGENIC
2R	11220704	2R_11220704_SNP [dm3] 2R_15333199_SNP [dm6]	C	G	1.074e^-5	0.035	INTRON Hr51
3L	1343974	3L_1343974_SNP [dm3] 3L_1343974_SNP [dm6]	C	A	1.076e^-5	0.035	UTR_3_PRIME Ptp61F DOWNSTREAM Ptp61F INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10056032	2R_10056032_SNP [dm3] 2R_14168527_SNP [dm6]	A	T	1.077e^-5	0.035	UPSTREAM CG18324 DOWNSTREAM CR44368 & 1 other INTERGENIC
2R	18626636	2R_18626636_SNP [dm3] 2R_22739131_SNP [dm6]	T	C	1.079e^-5	0.035	INTRON jbug
X	12894113	X_12894113_SNP [dm3] X_13000080_SNP [dm6]	C	A	1.090e^-5	0.035	INTRON rad
3R	10915613	3R_10915613_SNP [dm3] 3R_15089891_SNP [dm6]	G	A	1.090e^-5	0.035	INTRON CG6966
3L	16817677	3L_16817677_SNP [dm3] 3L_16824577_SNP [dm6]	C	A	1.092e^-5	0.035	INTRON CG13024
3L	20799775	3L_20799775_SNP [dm3] 3L_20806675_SNP [dm6]	C	T	1.094e^-5	0.035	UTR_3_PRIME Spc105R DOWNSTREAM CG3634
3L	5778214	3L_5778214_SNP [dm3] 3L_5785114_SNP [dm6]	C	G	1.094e^-5	0.035	DOWNSTREAM PGRP-LD & 1 other INTRON Cralbp
2L	22107498	2L_22107498_SNP [dm3] 2L_22107498_SNP [dm6]	C	T	1.098e^-5	0.035	UPSTREAM CG10834 INTERGENIC
X	6329897	X_6329897_SNP [dm3] X_6435864_SNP [dm6]	C	T	1.101e^-5	0.035	INTRON CG42340	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15154207	X_15154207_SNP [dm3] X_15260174_SNP [dm6]	C	T	1.106e^-5	0.035	INTERGENIC
X	15154209	X_15154209_SNP [dm3] X_15260176_SNP [dm6]	A	C	1.106e^-5	0.035	INTERGENIC
X	15154210	X_15154210_SNP [dm3] X_15260177_SNP [dm6]	A	T	1.106e^-5	0.035	INTERGENIC
X	15154221	X_15154221_SNP [dm3] X_15260188_SNP [dm6]	T	C	1.106e^-5	0.035	INTERGENIC
X	21929672	X_21929672_DEL [dm3] X_22527836_DEL [dm6]	TG	T	1.120e^-5	0.036	INTRON CG17600
X	21929675	X_21929675_SNP [dm3] X_22527839_SNP [dm6]	T	A	1.120e^-5	0.036	INTRON CG17600
2L	10616034	2L_10616034_SNP [dm3] 2L_10616034_SNP [dm6]	A	C	1.125e^-5	0.036	INTRON Trim9	TF binding site BDTNP1_TFBS_twi
2L	9506374	2L_9506374_SNP [dm3] 2L_9506374_SNP [dm6]	T	A	1.131e^-5	0.036	INTRON CG33298
3L	4942326	3L_4942326_SNP [dm3] 3L_4942326_SNP [dm6]	C	T	1.134e^-5	0.036	INTRON Con
3L	10125195	3L_10125195_SNP [dm3] 3L_10132095_SNP [dm6]	C	T	1.136e^-5	0.036	INTRON dpr6
3L	9486794	3L_9486794_INS [dm3] 3L_9493694_INS [dm6]	A	AGCAATAGGTACAACCAACG...	1.138e^-5	0.036	DOWNSTREAM path INTERGENIC
2R	17294364	2R_17294364_SNP [dm3] 2R_21406859_SNP [dm6]	A	G	1.141e^-5	0.036	INTRON Sdc
3R	20354599	3R_20354599_SNP [dm3] 3R_24528877_SNP [dm6]	G	A	1.142e^-5	0.036	SYNONYMOUS_CODING CG6607 DOWNSTREAM CG13623	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20354663	3R_20354663_SNP [dm3] 3R_24528941_SNP [dm6]	T	A	1.142e^-5	0.036	DOWNSTREAM CG13623 INTRON CG6607	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20354790	3R_20354790_SNP [dm3] 3R_24529068_SNP [dm6]	C	T	1.142e^-5	0.036	SYNONYMOUS_CODING CG6607 DOWNSTREAM CG13623	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	847477	2L_847477_SNP [dm3] 2L_847477_SNP [dm6]	T	C	1.143e^-5	0.036	INTRON drongo
2R	10577227	2R_10577227_SNP [dm3] 2R_14689722_SNP [dm6]	G	T	1.145e^-5	0.036	INTRON mspo
3R	14373508	3R_14373508_SNP [dm3] 3R_18547786_SNP [dm6]	T	A	1.149e^-5	0.036	INTERGENIC
X	6517564	X_6517564_SNP [dm3] X_6623531_SNP [dm6]	A	T	1.149e^-5	0.036	INTRON pigs
3R	22773386	3R_22773386_DEL [dm3] 3R_26947664_DEL [dm6]	GG	G	1.150e^-5	0.036	UPSTREAM CG18472 & 2 others DOWNSTREAM CG14252 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3595144	3L_3595144_SNP [dm3] 3L_3595144_SNP [dm6]	G	C	1.157e^-5	0.036	INTRON Eip63E
2L	10910866	2L_10910866_INS [dm3] 2L_10910866_INS [dm6]	A	ACTATCTA	1.157e^-5	0.036	UPSTREAM CG14069 INTERGENIC
X	16691401	X_16691401_SNP [dm3] X_16797368_SNP [dm6]	G	A	1.164e^-5	0.036	UTR_3_PRIME CG9132 DOWNSTREAM CG9132 & 1 other
2L	12519930	2L_12519930_INS [dm3] 2L_12519930_INS [dm6]	T	TGTT	1.167e^-5	0.036	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	16710373	3L_16710373_SNP [dm3] 3L_16717273_SNP [dm6]	T	C	1.171e^-5	0.036	INTRON Dab
2R	10057977	2R_10057977_SNP [dm3] 2R_14170472_SNP [dm6]	C	G	1.174e^-5	0.036	UTR_5_PRIME CG8331 UPSTREAM CG8331 & 1 other DOWNSTREAM CG18324	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9078527	2L_9078527_SNP [dm3] 2L_9078527_SNP [dm6]	C	T	1.183e^-5	0.036	DOWNSTREAM CG12439 INTERGENIC
3L	3393554	3L_3393554_SNP [dm3] 3L_3393554_SNP [dm6]	T	G	1.184e^-5	0.036	UPSTREAM CR45737 INTERGENIC
X	12873721	X_12873721_SNP [dm3] X_12979688_SNP [dm6]	C	A	1.191e^-5	0.036	INTERGENIC
3L	5325064	3L_5325064_SNP [dm3] 3L_5331964_SNP [dm6]	T	A	1.193e^-5	0.036	INTERGENIC
3L	16873245	3L_16873245_SNP [dm3] 3L_16880145_SNP [dm6]	T	A	1.198e^-5	0.036	DOWNSTREAM CG32170 INTRON Lmpt
2L	9094742	2L_9094742_SNP [dm3] 2L_9094742_SNP [dm6]	C	A	1.198e^-5	0.036	INTERGENIC
2L	4913762	2L_4913762_SNP [dm3] 2L_4913762_SNP [dm6]	C	A	1.206e^-5	0.037	INTRON hoe1
3R	19202754	3R_19202754_SNP [dm3] 3R_23377032_SNP [dm6]	C	A	1.210e^-5	0.037	UTR_3_PRIME CG4393 DOWNSTREAM CG4393	TF binding site mE1_TFBS_inv
2R	19985885	2R_19985885_SNP [dm3] 2R_24098362_SNP [dm6]	A	G	1.211e^-5	0.037	UPSTREAM enok INTRON gek	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26928322	3R_26928322_SNP [dm3] 3R_31102600_SNP [dm6]	G	C	1.212e^-5	0.037	INTERGENIC
3R	26928342	3R_26928342_SNP [dm3] 3R_31102620_SNP [dm6]	G	A	1.212e^-5	0.037	INTERGENIC
3R	25421689	3R_25421689_SNP [dm3] 3R_29595967_SNP [dm6]	A	C	1.214e^-5	0.037	INTRON alph
3R	25438708	3R_25438708_DEL [dm3] 3R_29612986_DEL [dm6]	GACG	G	1.221e^-5	0.037	INTRON alph
2L	85632	2L_85632_SNP [dm3] 2L_85632_SNP [dm6]	G	A	1.231e^-5	0.037	INTRON net	TF binding site mE1_TFBS_cad
3R	19368973	3R_19368973_SNP [dm3] 3R_23543251_SNP [dm6]	T	G	1.238e^-5	0.037	INTERGENIC
2L	2927500	2L_2927500_SNP [dm3] 2L_2927500_SNP [dm6]	C	A	1.238e^-5	0.037	INTRON lilli
2L	2927506	2L_2927506_SNP [dm3] 2L_2927506_SNP [dm6]	A	T	1.238e^-5	0.037	INTRON lilli
2L	2927518	2L_2927518_SNP [dm3] 2L_2927518_SNP [dm6]	C	A	1.238e^-5	0.037	INTRON lilli
3L	20972685	3L_20972685_SNP [dm3] 3L_20979585_SNP [dm6]	T	C	1.259e^-5	0.037	EXON CR33283
3R	7744670	3R_7744670_DEL [dm3] 3R_11918948_DEL [dm6]	GGGGCTATCCGAG...	G	1.262e^-5	0.037	INTRON Cad87A
2L	6030974	2L_6030974_SNP [dm3] 2L_6030974_SNP [dm6]	T	C	1.264e^-5	0.037	INTRON CG9109
2R	7970005	2R_7970005_SNP [dm3] 2R_12082500_SNP [dm6]	G	A	1.264e^-5	0.037	DOWNSTREAM CG13186 INTERGENIC
2L	6342365	2L_6342365_SNP [dm3] 2L_6342365_SNP [dm6]	T	G	1.266e^-5	0.037	INTRON Cpr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25428467	3R_25428467_SNP [dm3] 3R_29602745_SNP [dm6]	G	T	1.268e^-5	0.037	INTRON alph
2R	16913768	2R_16913768_SNP [dm3] 2R_21026263_SNP [dm6]	A	G	1.271e^-5	0.037	DOWNSTREAM CG9350 INTERGENIC	TF binding site mE1_TFBS_cad
3L	3393574	3L_3393574_SNP [dm3] 3L_3393574_SNP [dm6]	A	T	1.272e^-5	0.037	UPSTREAM CR45737 INTERGENIC
3L	3393579	3L_3393579_SNP [dm3] 3L_3393579_SNP [dm6]	A	G	1.272e^-5	0.037	UPSTREAM CR45737 INTERGENIC
3L	8618861	3L_8618861_SNP [dm3] 3L_8625761_SNP [dm6]	A	T	1.285e^-5	0.038	UPSTREAM Zasp66 INTRON Zasp66
2L	9506013	2L_9506013_SNP [dm3] 2L_9506013_SNP [dm6]	T	C	1.286e^-5	0.038	INTRON CG33298
2L	12167629	2L_12167629_SNP [dm3] 2L_12167629_SNP [dm6]	T	C	1.292e^-5	0.038	DOWNSTREAM ZnT33D INTRON CG31760
3R	24401316	3R_24401316_SNP [dm3] 3R_28575594_SNP [dm6]	T	G	1.301e^-5	0.038	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
3L	9177752	3L_9177752_SNP [dm3] 3L_9184652_SNP [dm6]	A	G	1.309e^-5	0.038	INTERGENIC
2R	3735495	2R_3735495_SNP [dm3] 2R_7847990_SNP [dm6]	T	G	1.321e^-5	0.038	UPSTREAM Dgk INTRON Dgk
3R	9907192	3R_9907192_SNP [dm3] 3R_14081470_SNP [dm6]	T	C	1.322e^-5	0.038	INTRON foxo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19970549	3L_19970549_SNP [dm3] 3L_19977449_SNP [dm6]	C	G	1.326e^-5	0.038	UTR_3_PRIME Ac76E
3R	14171025	3R_14171025_SNP [dm3] 3R_18345303_SNP [dm6]	T	A	1.329e^-5	0.038	INTRON CG15803
2R	16662662	2R_16662662_SNP [dm3] 2R_20775157_SNP [dm6]	G	T	1.332e^-5	0.038	UTR_3_PRIME CG13443 DOWNSTREAM CG43709	TF binding site mE1_TFBS_cad
3R	18804547	3R_18804547_SNP [dm3] 3R_22978825_SNP [dm6]	A	G	1.333e^-5	0.038	DOWNSTREAM CG17244 INTERGENIC
3L	18223554	3L_18223554_SNP [dm3] 3L_18230454_SNP [dm6]	T	A	1.334e^-5	0.038	INTERGENIC
3L	20432180	3L_20432180_SNP [dm3] 3L_20439080_SNP [dm6]	C	A	1.344e^-5	0.039	NON_SYNONYMOUS_CODING CG11796 UPSTREAM CR45176 & 1 other DOWNSTREAM CG5872	TF binding site mE1_TFBS_sens
2R	17064497	2R_17064497_SNP [dm3] 2R_21176992_SNP [dm6]	A	C	1.358e^-5	0.039	DOWNSTREAM CG4286 INTRON Pu
2R	20186509	2R_20186509_SNP [dm3] 2R_24298986_SNP [dm6]	C	T	1.371e^-5	0.039	DOWNSTREAM CG3394 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17262357	3R_17262357_SNP [dm3] 3R_21436635_SNP [dm6]	A	G	1.372e^-5	0.039	EXON CR44089	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	15075962	2R_15075962_SNP [dm3] 2R_19188457_SNP [dm6]	G	A	1.383e^-5	0.039	INTRON hppy
3L	10558257	3L_10558257_INS [dm3] 3L_10565157_INS [dm6]	T	TGCCCCATTAAAATG...	1.383e^-5	0.039	INTRON A2bp1
3L	10558282	3L_10558282_SNP [dm3] 3L_10565182_SNP [dm6]	G	A	1.383e^-5	0.039	INTRON A2bp1
X	6517257	X_6517257_SNP [dm3] X_6623224_SNP [dm6]	C	G	1.383e^-5	0.039	INTRON pigs	TF binding site mE1_TFBS_HSA
2L	20125093	2L_20125093_SNP [dm3] 2L_20125093_SNP [dm6]	G	A	1.388e^-5	0.039	INTERGENIC
2R	3242246	2R_3242246_SNP [dm3] 2R_7354741_SNP [dm6]	C	A	1.390e^-5	0.039	NON_SYNONYMOUS_CODING Dscam1 INTRON Dscam1	TF binding site mE1_TFBS_inv
X	20892251	X_20892251_SNP [dm3] X_21021224_SNP [dm6]	G	A	1.394e^-5	0.04	INTERGENIC
2R	14778363	2R_14778363_SNP [dm3] 2R_18890858_SNP [dm6]	G	A	1.435e^-5	0.04	INTRON sano
2R	5708201	2R_5708201_SNP [dm3] 2R_9820696_SNP [dm6]	T	A	1.436e^-5	0.04	UPSTREAM CG1648 DOWNSTREAM CG30001 INTRON CG34033	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	5269359	3R_5269359_SNP [dm3] 3R_9443637_SNP [dm6]	A	T	1.437e^-5	0.04	INTRON ps
3R	5269363	3R_5269363_SNP [dm3] 3R_9443641_SNP [dm6]	T	C	1.437e^-5	0.04	INTRON ps
3L	5329045	3L_5329045_SNP [dm3] 3L_5335945_SNP [dm6]	G	A	1.438e^-5	0.04	DOWNSTREAM CR45742 INTERGENIC
2L	9101403	2L_9101403_SNP [dm3] 2L_9101403_SNP [dm6]	G	T	1.445e^-5	0.041	INTERGENIC
X	2594128	X_2594128_SNP [dm3] X_2700095_SNP [dm6]	A	C	1.445e^-5	0.041	SYNONYMOUS_CODING CG2662
X	1120116	X_1120116_SNP [dm3] X_1226083_SNP [dm6]	G	C	1.453e^-5	0.041	INTRON CG3638	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12956754	3R_12956754_SNP [dm3] 3R_17131032_SNP [dm6]	T	C	1.457e^-5	0.041	UPSTREAM CG17475 DOWNSTREAM CG4053 INTERGENIC
2R	17028216	2R_17028216_SNP [dm3] 2R_21140711_SNP [dm6]	G	T	1.472e^-5	0.041	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	16182566	3L_16182566_SNP [dm3] 3L_16189466_SNP [dm6]	G	A	1.490e^-5	0.042	INTERGENIC
3L	9790543	3L_9790543_SNP [dm3] 3L_9797443_SNP [dm6]	C	G	1.507e^-5	0.042	SYNONYMOUS_CODING Zasp67 UPSTREAM Ilp1
X	482573	X_482573_SNP [dm3] X_588540_SNP [dm6]	C	G	1.509e^-5	0.042	INTRON vnd & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5765544	3R_5765544_SNP [dm3] 3R_9939822_SNP [dm6]	C	G	1.510e^-5	0.042	INTRON Glut4EF
3R	14373757	3R_14373757_SNP [dm3] 3R_18548035_SNP [dm6]	G	T	1.520e^-5	0.042	INTERGENIC
X	16710431	X_16710431_SNP [dm3] X_16816398_SNP [dm6]	A	G	1.525e^-5	0.042	UPSTREAM CG4829 & 1 other INTRON CG4829
2L	20135785	2L_20135785_SNP [dm3] 2L_20135785_SNP [dm6]	C	T	1.535e^-5	0.042	UPSTREAM CG10651 INTERGENIC
3R	18449137	3R_18449137_SNP [dm3] 3R_22623415_SNP [dm6]	G	T	1.544e^-5	0.043	INTRON loco	TF binding site mE1_TFBS_h
2L	12158449	2L_12158449_INS [dm3] 2L_12158449_INS [dm6]	A	AGTAAATTCACCTACTATCG...	1.558e^-5	0.043	INTRON CG31760
2R	16442406	2R_16442406_SNP [dm3] 2R_20554901_SNP [dm6]	A	C	1.558e^-5	0.043	INTERGENIC
3L	14713931	3L_14713931_SNP [dm3] 3L_14720831_SNP [dm6]	A	T	1.568e^-5	0.043	INTRON ome
2R	18509318	2R_18509318_DEL [dm3] 2R_22621813_DEL [dm6]	TTAGAAT	T	1.578e^-5	0.043	INTRON CG33143
2R	18509331	2R_18509331_SNP [dm3] 2R_22621826_SNP [dm6]	T	C	1.578e^-5	0.043	INTRON CG33143
3L	10558261	3L_10558261_SNP [dm3] 3L_10565161_SNP [dm6]	C	A	1.582e^-5	0.043	INTRON A2bp1
3R	21859439	3R_21859439_SNP [dm3] 3R_26033717_SNP [dm6]	C	T	1.585e^-5	0.043	UTR_3_PRIME E_spl_m6-BFM	TF binding site BDTNP1_TFBS_twi
2L	6819540	2L_6819540_SNP [dm3] 2L_6819540_SNP [dm6]	A	G	1.596e^-5	0.043	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
2R	3735406	2R_3735406_SNP [dm3] 2R_7847901_SNP [dm6]	T	C	1.606e^-5	0.043	UPSTREAM Dgk INTRON Dgk
2R	4226195	2R_4226195_SNP [dm3] 2R_8338690_SNP [dm6]	A	T	1.620e^-5	0.043	INTRON pdm3
2L	8168153	2L_8168153_SNP [dm3] 2L_8168153_SNP [dm6]	T	A	1.627e^-5	0.043	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23603358	3R_23603358_DEL [dm3] 3R_27777636_DEL [dm6]	TT	T	1.643e^-5	0.043	INTRON CG34353
2R	17004630	2R_17004630_SNP [dm3] 2R_21117125_SNP [dm6]	T	G	1.644e^-5	0.043	INTRON ktub
2R	19411887	2R_19411887_SNP [dm3] 2R_23524364_SNP [dm6]	A	G	1.644e^-5	0.043	SYNONYMOUS_CODING mi UPSTREAM RabX1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	3735257	2R_3735257_SNP [dm3] 2R_7847752_SNP [dm6]	T	A	1.644e^-5	0.043	UPSTREAM Dgk INTRON Dgk
3L	12493826	3L_12493826_SNP [dm3] 3L_12500726_SNP [dm6]	G	A	1.644e^-5	0.043	SYNONYMOUS_CODING CG10638 UPSTREAM CG10681 DOWNSTREAM CR43868 INTRON CG10638	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5777659	3L_5777659_SNP [dm3] 3L_5784559_SNP [dm6]	C	T	1.644e^-5	0.043	UTR_3_PRIME Pmi & 1 other INTRON Cralbp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9358743	3L_9358743_SNP [dm3] 3L_9365643_SNP [dm6]	T	A	1.644e^-5	0.043	SYNONYMOUS_CODING Klp67A DOWNSTREAM CG4447	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9449829	3L_9449829_SNP [dm3] 3L_9456729_SNP [dm6]	G	T	1.644e^-5	0.043	UPSTREAM phol INTRON CG3552 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	9449838	3L_9449838_DEL [dm3] 3L_9456738_DEL [dm6]	AGATC	A	1.644e^-5	0.043	UPSTREAM phol INTRON CG3552 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	9449846	3L_9449846_INS [dm3] 3L_9456746_INS [dm6]	T	TCAA	1.644e^-5	0.043	UPSTREAM phol INTRON CG3552 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	9449990	3L_9449990_SNP [dm3] 3L_9456890_SNP [dm6]	T	G	1.644e^-5	0.043	NON_SYNONYMOUS_CODING CG3437 UPSTREAM phol INTRON CG3552	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	15833305	3R_15833305_SNP [dm3] 3R_20007583_SNP [dm6]	G	T	1.644e^-5	0.043	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	17417095	3R_17417095_SNP [dm3] 3R_21591373_SNP [dm6]	G	A	1.644e^-5	0.043	UPSTREAM CR43653 INTRON InR	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3R	17417209	3R_17417209_SNP [dm3] 3R_21591487_SNP [dm6]	T	C	1.644e^-5	0.043	UPSTREAM CR43653 INTRON InR	regulatory region REDfly_CRMs
3R	19383965	3R_19383965_SNP [dm3] 3R_23558243_SNP [dm6]	A	G	1.644e^-5	0.043	INTRON beat-IV
3R	20805876	3R_20805876_SNP [dm3] 3R_24980154_SNP [dm6]	A	G	1.644e^-5	0.043	INTERGENIC
3R	24345780	3R_24345780_SNP [dm3] 3R_28520058_SNP [dm6]	G	T	1.644e^-5	0.043	NON_SYNONYMOUS_CODING CG31051 DOWNSTREAM Dhc98D & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26176045	3R_26176045_SNP [dm3] 3R_30350323_SNP [dm6]	C	T	1.644e^-5	0.043	INTRON hdc
X	16095060	X_16095060_SNP [dm3] X_16201027_SNP [dm6]	G	T	1.644e^-5	0.043	INTERGENIC
X	16095101	X_16095101_SNP [dm3] X_16201068_SNP [dm6]	G	A	1.644e^-5	0.043	INTERGENIC
3R	20059069	3R_20059069_SNP [dm3] 3R_24233347_SNP [dm6]	A	G	1.656e^-5	0.044	INTRON mask	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5329042	3L_5329042_SNP [dm3] 3L_5335942_SNP [dm6]	G	A	1.679e^-5	0.044	DOWNSTREAM CR45742 INTERGENIC
3L	4245558	3L_4245558_SNP [dm3] 3L_4245558_SNP [dm6]	G	C	1.695e^-5	0.045	SYNONYMOUS_CODING pav DOWNSTREAM ago
2R	10056027	2R_10056027_SNP [dm3] 2R_14168522_SNP [dm6]	T	C	1.711e^-5	0.045	UPSTREAM CG18324 DOWNSTREAM CR44368 & 1 other INTERGENIC
3L	20585783	3L_20585783_SNP [dm3] 3L_20592683_SNP [dm6]	A	G	1.711e^-5	0.045	INTERGENIC
3R	20330930	3R_20330930_SNP [dm3] 3R_24505208_SNP [dm6]	A	G	1.736e^-5	0.045	INTERGENIC
3L	4942314	3L_4942314_SNP [dm3] 3L_4942314_SNP [dm6]	A	T	1.736e^-5	0.045	INTRON Con
3L	4942321	3L_4942321_SNP [dm3] 3L_4942321_SNP [dm6]	A	T	1.736e^-5	0.045	INTRON Con
X	19782308	X_19782308_SNP [dm3] X_19888275_SNP [dm6]	G	A	1.739e^-5	0.045	START_GAINED amn UTR_5_PRIME amn INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12945819	2L_12945819_SNP [dm3] 2L_12945819_SNP [dm6]	A	T	1.741e^-5	0.045	INTERGENIC
2R	3735234	2R_3735234_SNP [dm3] 2R_7847729_SNP [dm6]	A	G	1.765e^-5	0.046	UPSTREAM Dgk INTRON Dgk
2L	15577445	2L_15577445_SNP [dm3] 2L_15577445_SNP [dm6]	C	A	1.768e^-5	0.046	INTRON kek3
2R	16952951	2R_16952951_SNP [dm3] 2R_21065446_SNP [dm6]	G	A	1.770e^-5	0.046	SYNONYMOUS_CODING Cht4 UPSTREAM Cht12	TF binding site mE1_TFBS_cad
2R	11220803	2R_11220803_SNP [dm3] 2R_15333298_SNP [dm6]	T	C	1.775e^-5	0.046	INTRON Hr51
2R	16365445	2R_16365445_SNP [dm3] 2R_20477940_SNP [dm6]	G	C	1.787e^-5	0.046	SYNONYMOUS_CODING CG12484
2L	6232501	2L_6232501_SNP [dm3] 2L_6232501_SNP [dm6]	A	T	1.791e^-5	0.046	DOWNSTREAM CR44823 INTERGENIC
2R	18422482	2R_18422482_SNP [dm3] 2R_22534977_SNP [dm6]	A	G	1.795e^-5	0.046	INTRON px
2L	832149	2L_832149_SNP [dm3] 2L_832149_SNP [dm6]	G	A	1.796e^-5	0.046	UTR_3_PRIME dock	TF binding site mE1_TFBS_cad
2R	10051237	2R_10051237_SNP [dm3] 2R_14163732_SNP [dm6]	C	A	1.821e^-5	0.047	SYNONYMOUS_CODING Tango7 DOWNSTREAM O-fut1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	21027164	2L_21027164_DEL [dm3] 2L_21027164_DEL [dm6]	CTCGG	C	1.834e^-5	0.047	INTRON CG42238	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	6870152	2L_6870152_SNP [dm3] 2L_6870152_SNP [dm6]	C	A	1.834e^-5	0.047	UTR_5_PRIME Nha1
2R	17005818	2R_17005818_SNP [dm3] 2R_21118313_SNP [dm6]	A	C	1.834e^-5	0.047	UPSTREAM CG9394 INTRON ktub	TF binding site mE1_TFBS_cad
3L	9252662	3L_9252662_SNP [dm3] 3L_9259562_SNP [dm6]	G	C	1.835e^-5	0.047	INTRON GluRIB
X	19029937	X_19029937_INS [dm3] X_19135904_INS [dm6]	C	CCC	1.837e^-5	0.047	UPSTREAM Obp18a DOWNSTREAM RhoGAP18B INTERGENIC	regulatory region REDfly_CRMs
3R	17492638	3R_17492638_SNP [dm3] 3R_21666916_SNP [dm6]	A	G	1.840e^-5	0.047	DOWNSTREAM CG15497 INTRON DNApol-alpha180	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10260788	3L_10260788_SNP [dm3] 3L_10267688_SNP [dm6]	G	T	1.845e^-5	0.047	UPSTREAM can INTERGENIC	regulatory region REDfly_CRMs
2L	13607725	2L_13607725_SNP [dm3] 2L_13607725_SNP [dm6]	A	G	1.856e^-5	0.047	INTRON kuz
2L	5699253	2L_5699253_SNP [dm3] 2L_5699253_SNP [dm6]	C	T	1.863e^-5	0.047	INTERGENIC
X	13026116	X_13026116_SNP [dm3] X_13132083_SNP [dm6]	T	C	1.864e^-5	0.047	INTRON MFS10 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	6152836	3R_6152836_SNP [dm3] 3R_10327114_SNP [dm6]	C	T	1.870e^-5	0.047	NON_SYNONYMOUS_CODING Bruce	TF binding site mE1_TFBS_sens
2L	6081895	2L_6081895_SNP [dm3] 2L_6081895_SNP [dm6]	G	A	1.875e^-5	0.047	UPSTREAM Kr-h1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11111374	3L_11111374_SNP [dm3] 3L_11118274_SNP [dm6]	C	A	1.878e^-5	0.047	INTRON fd68A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	5958808	3L_5958808_SNP [dm3] 3L_5965708_SNP [dm6]	G	C	1.881e^-5	0.047	INTERGENIC
2L	20974270	2L_20974270_SNP [dm3] 2L_20974270_SNP [dm6]	G	A	1.886e^-5	0.047	INTRON CG42238
2L	10780084	2L_10780084_SNP [dm3] 2L_10780084_SNP [dm6]	C	A	1.886e^-5	0.047	INTRON CG31869
2R	1776605	2R_1776605_SNP [dm3] 2R_5889100_SNP [dm6]	C	A	1.887e^-5	0.047	INTERGENIC	transposable element FlyBase
3R	17262369	3R_17262369_SNP [dm3] 3R_21436647_SNP [dm6]	T	C	1.891e^-5	0.047	EXON CR44089	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	7438659	2R_7438659_SNP [dm3] 2R_11551154_SNP [dm6]	T	G	1.891e^-5	0.047	INTERGENIC
3L	2312686	3L_2312686_SNP [dm3] 3L_2312686_SNP [dm6]	C	T	1.894e^-5	0.047	INTERGENIC
3R	18449134	3R_18449134_SNP [dm3] 3R_22623412_SNP [dm6]	G	T	1.897e^-5	0.047	INTRON loco	TF binding site mE1_TFBS_h
3L	8970492	3L_8970492_SNP [dm3] 3L_8977392_SNP [dm6]	C	T	1.910e^-5	0.047	UTR_3_PRIME Srp68 DOWNSTREAM CG5644	TF binding site mE1_TFBS_cad
2R	17003362	2R_17003362_SNP [dm3] 2R_21115857_SNP [dm6]	T	C	1.910e^-5	0.047	INTRON ktub
2R	19957939	2R_19957939_SNP [dm3] 2R_24070416_SNP [dm6]	A	G	1.910e^-5	0.047	INTRON CG3209	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19959429	2R_19959429_SNP [dm3] 2R_24071906_SNP [dm6]	C	T	1.910e^-5	0.047	INTRON CG3209
2R	19974129	2R_19974129_SNP [dm3] 2R_24086606_SNP [dm6]	G	T	1.910e^-5	0.047	UTR_5_PRIME snama DOWNSTREAM CG16786	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	19974764	2R_19974764_SNP [dm3] 2R_24087241_SNP [dm6]	T	C	1.910e^-5	0.047	DOWNSTREAM CG16786 INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25443202	3R_25443202_SNP [dm3] 3R_29617480_SNP [dm6]	G	A	1.911e^-5	0.047	DOWNSTREAM alph INTERGENIC
X	18574604	X_18574604_SNP [dm3] X_18680571_SNP [dm6]	C	T	1.917e^-5	0.047	INTERGENIC
2L	15330963	2L_15330963_SNP [dm3] 2L_15330963_SNP [dm6]	T	C	1.922e^-5	0.047	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15984236	2L_15984236_SNP [dm3] 2L_15984236_SNP [dm6]	A	T	1.922e^-5	0.047	INTERGENIC
2R	16134005	2R_16134005_SNP [dm3] 2R_20246500_SNP [dm6]	G	A	1.922e^-5	0.047	SYNONYMOUS_CODING ppk6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19984341	2R_19984341_SNP [dm3] 2R_24096818_SNP [dm6]	C	T	1.922e^-5	0.047	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4028584	3L_4028584_SNP [dm3] 3L_4028584_SNP [dm6]	T	C	1.922e^-5	0.047	UTR_3_PRIME Gr64a UPSTREAM Gr64b & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19048656	3R_19048656_SNP [dm3] 3R_23222934_SNP [dm6]	A	T	1.922e^-5	0.047	NON_SYNONYMOUS_CODING cnc UPSTREAM cnc
3R	20805883	3R_20805883_SNP [dm3] 3R_24980161_SNP [dm6]	G	A	1.922e^-5	0.047	INTERGENIC
2R	15539073	2R_15539073_SNP [dm3] 2R_19651568_SNP [dm6]	T	G	1.924e^-5	0.047	UPSTREAM Ir56e DOWNSTREAM CR44212 INTERGENIC
3R	17417910	3R_17417910_SNP [dm3] 3R_21592188_SNP [dm6]	C	A	1.928e^-5	0.047	UPSTREAM CR43653 & 1 other INTRON InR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17419966	3R_17419966_SNP [dm3] 3R_21594244_SNP [dm6]	T	C	1.928e^-5	0.047	INTRON InR EXON CR43653	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24561532	3R_24561532_SNP [dm3] 3R_28735810_SNP [dm6]	G	A	1.928e^-5	0.047	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24561533	3R_24561533_DEL [dm3] 3R_28735811_DEL [dm6]	AGTCCTTGTAATG...	A	1.928e^-5	0.047	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11966450	2L_11966450_SNP [dm3] 2L_11966450_SNP [dm6]	C	T	1.931e^-5	0.047	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11966455	2L_11966455_SNP [dm3] 2L_11966455_SNP [dm6]	A	T	1.931e^-5	0.047	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10280011	3R_10280011_SNP [dm3] 3R_14454289_SNP [dm6]	A	C	1.937e^-5	0.047	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
X	16812010	X_16812010_SNP [dm3] X_16917977_SNP [dm6]	G	A	1.939e^-5	0.047	INTRON CG4928
3R	17605267	3R_17605267_SNP [dm3] 3R_21779545_SNP [dm6]	C	T	1.946e^-5	0.047	SPLICE_SITE_REGION tsl INTRON tsl
2R	3735289	2R_3735289_INS [dm3] 2R_7847784_INS [dm6]	A	ATAA	1.947e^-5	0.047	UPSTREAM Dgk INTRON Dgk
3R	20355955	3R_20355955_SNP [dm3] 3R_24530233_SNP [dm6]	C	A	1.957e^-5	0.047	UPSTREAM ana1 DOWNSTREAM CG6607 INTRON CG13623	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12175846	2L_12175846_SNP [dm3] 2L_12175846_SNP [dm6]	T	A	1.958e^-5	0.047	INTRON aret & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7526647	2R_7526647_SNP [dm3] 2R_11639142_SNP [dm6]	G	T	1.960e^-5	0.047	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10604917	2R_10604917_SNP [dm3] 2R_14717412_SNP [dm6]	T	A	1.960e^-5	0.047	INTERGENIC
2R	2665803	2R_2665803_SNP [dm3] 2R_6778298_SNP [dm6]	G	T	1.960e^-5	0.047	INTRON Epac
3L	4395176	3L_4395176_SNP [dm3] 3L_4395176_SNP [dm6]	C	A	1.960e^-5	0.047	INTRON slow
2L	408372	2L_408372_SNP [dm3] 2L_408372_SNP [dm6]	C	T	1.977e^-5	0.047	UTR_3_PRIME AP-2alpha DOWNSTREAM AP-2alpha & 1 other
3R	18446057	3R_18446057_SNP [dm3] 3R_22620335_SNP [dm6]	C	T	1.981e^-5	0.047	SYNONYMOUS_CODING loco DOWNSTREAM mRpL45	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4946324	3R_4946324_SNP [dm3] 3R_9120602_SNP [dm6]	G	C	1.983e^-5	0.047	INTRON pum
X	16628239	X_16628239_SNP [dm3] X_16734206_SNP [dm6]	T	A	1.991e^-5	0.047	UPSTREAM TwdlY INTRON CG9634
3R	26939056	3R_26939056_SNP [dm3] 3R_31113334_SNP [dm6]	C	T	1.992e^-5	0.047	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11487278	2L_11487278_SNP [dm3] 2L_11487278_SNP [dm6]	A	G	1.992e^-5	0.047	DOWNSTREAM sala & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16372818	2L_16372818_SNP [dm3] 2L_16372818_SNP [dm6]	A	T	1.994e^-5	0.047	INTERGENIC
2L	3008803	2L_3008803_SNP [dm3] 2L_3008803_SNP [dm6]	G	C	1.994e^-5	0.047	INTRON CG17265
2R	6203390	2R_6203390_SNP [dm3] 2R_10315885_SNP [dm6]	C	T	1.995e^-5	0.047	INTRON Ndg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18129514	3L_18129514_SNP [dm3] 3L_18136414_SNP [dm6]	A	T	2.003e^-5	0.047	UPSTREAM CR44669 INTERGENIC
2L	4877607	2L_4877607_INS [dm3] 2L_4877607_INS [dm6]	A	AAAA	2.019e^-5	0.048	UTR_3_PRIME Cf2 DOWNSTREAM pog
2R	10058547	2R_10058547_SNP [dm3] 2R_14171042_SNP [dm6]	T	A	2.024e^-5	0.048	UPSTREAM CG8331 & 1 other DOWNSTREAM CG18324 INTRON CG8331	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7004255	3L_7004255_SNP [dm3] 3L_7011155_SNP [dm6]	G	A	2.035e^-5	0.048	INTRON Mp
2L	6005175	2L_6005175_SNP [dm3] 2L_6005175_SNP [dm6]	T	A	2.035e^-5	0.048	INTRON Gal EXON CR43866	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3486008	3L_3486008_SNP [dm3] 3L_3486008_SNP [dm6]	G	T	2.041e^-5	0.048	SYNONYMOUS_CODING CG42324 UTR_5_PRIME CG42324
3R	12025714	3R_12025714_SNP [dm3] 3R_16199992_SNP [dm6]	G	T	2.050e^-5	0.048	INTRON CG6126	TF binding site mE1_TFBS_cad
X	12873532	X_12873532_SNP [dm3] X_12979499_SNP [dm6]	C	T	2.065e^-5	0.048	INTERGENIC
X	816859	X_816859_SNP [dm3] X_922826_SNP [dm6]	T	G	2.065e^-5	0.048	DOWNSTREAM CG3711 INTRON CG43867
3L	11654517	3L_11654517_SNP [dm3] 3L_11661417_SNP [dm6]	C	G	2.072e^-5	0.048	INTRON CG32085
2L	18822728	2L_18822728_SNP [dm3] 2L_18822728_SNP [dm6]	G	A	2.080e^-5	0.049	UPSTREAM CG17323 DOWNSTREAM CG17324 INTERGENIC
3L	16457754	3L_16457754_SNP [dm3] 3L_16464654_SNP [dm6]	C	T	2.086e^-5	0.049	INTRON CG33158
2L	7179331	2L_7179331_SNP [dm3] 2L_7179331_SNP [dm6]	G	T	2.097e^-5	0.049	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18448718	3L_18448718_SNP [dm3] 3L_18455618_SNP [dm6]	A	T	2.099e^-5	0.049	DOWNSTREAM CR44670 INTERGENIC
2R	7790661	2R_7790661_SNP [dm3] 2R_11903156_SNP [dm6]	T	G	2.100e^-5	0.049	INTRON MCPH1
2L	9091056	2L_9091056_SNP [dm3] 2L_9091056_SNP [dm6]	G	T	2.103e^-5	0.049	INTERGENIC
3L	18075238	3L_18075238_SNP [dm3] 3L_18082138_SNP [dm6]	G	C	2.121e^-5	0.049	INTRON CR43253
3L	17410830	3L_17410830_SNP [dm3] 3L_17417730_SNP [dm6]	T	C	2.122e^-5	0.049	INTRON blot	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
X	16844829	X_16844829_SNP [dm3] X_16950796_SNP [dm6]	T	C	2.122e^-5	0.049	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
X	16844840	X_16844840_SNP [dm3] X_16950807_SNP [dm6]	G	A	2.122e^-5	0.049	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
X	16844844	X_16844844_SNP [dm3] X_16950811_SNP [dm6]	C	G	2.122e^-5	0.049	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
X	16844971	X_16844971_SNP [dm3] X_16950938_SNP [dm6]	C	T	2.122e^-5	0.049	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
X	16844977	X_16844977_DEL [dm3] X_16950944_DEL [dm6]	TA	G	2.122e^-5	0.049	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
2R	4889335	2R_4889335_SNP [dm3] 2R_9001830_SNP [dm6]	C	A	2.134e^-5	0.049	INTRON Np
2L	10609662	2L_10609662_SNP [dm3] 2L_10609662_SNP [dm6]	T	A	2.146e^-5	0.049	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10609668	2L_10609668_SNP [dm3] 2L_10609668_SNP [dm6]	G	A	2.146e^-5	0.049	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10609698	2L_10609698_DEL [dm3] 2L_10609698_DEL [dm6]	TT	T	2.146e^-5	0.049	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10609702	2L_10609702_SNP [dm3] 2L_10609702_SNP [dm6]	G	A	2.146e^-5	0.049	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12646854	3R_12646854_SNP [dm3] 3R_16821132_SNP [dm6]	G	A	2.146e^-5	0.049	INTRON abd-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13776656	3R_13776656_SNP [dm3] 3R_17950934_SNP [dm6]	G	A	2.146e^-5	0.049	INTRON cpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	18574597	X_18574597_SNP [dm3] X_18680564_SNP [dm6]	T	G	2.152e^-5	0.049	INTERGENIC
2L	7179301	2L_7179301_INS [dm3] 2L_7179301_INS [dm6]	T	TAT	2.153e^-5	0.049	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1325247	2R_1325247_SNP [dm3] 2R_5437742_SNP [dm6]	T	A	2.154e^-5	0.049	INTRON laccase2
3R	15194652	3R_15194652_INS [dm3] 3R_19368930_INS [dm6]	A	AC	2.158e^-5	0.049	DOWNSTREAM Ino80 INTERGENIC
3R	26335258	3R_26335258_SNP [dm3] 3R_30509536_SNP [dm6]	G	A	2.158e^-5	0.049	NON_SYNONYMOUS_CODING CG34041 DOWNSTREAM CG34041 & 1 other
3R	26335354	3R_26335354_SNP [dm3] 3R_30509632_SNP [dm6]	C	A	2.158e^-5	0.049	NON_SYNONYMOUS_CODING CG34041 SPLICE_SITE_REGION CG34041 DOWNSTREAM CG34041 & 1 other
3R	26335355	3R_26335355_SNP [dm3] 3R_30509633_SNP [dm6]	A	G	2.158e^-5	0.049	NON_SYNONYMOUS_CODING CG34041 SPLICE_SITE_REGION CG34041 DOWNSTREAM CG34041 & 1 other
3R	26335357	3R_26335357_SNP [dm3] 3R_30509635_SNP [dm6]	T	A	2.158e^-5	0.049	NON_SYNONYMOUS_CODING CG34041 DOWNSTREAM CG34041 & 1 other
X	5996365	X_5996365_SNP [dm3] X_6102332_SNP [dm6]	T	C	2.159e^-5	0.049	SYNONYMOUS_CODING Nep1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10602698	2R_10602698_SNP [dm3] 2R_14715193_SNP [dm6]	C	T	2.164e^-5	0.049	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19954791	2R_19954791_SNP [dm3] 2R_24067268_SNP [dm6]	G	A	2.164e^-5	0.049	INTRON yki
2R	19954804	2R_19954804_SNP [dm3] 2R_24067281_SNP [dm6]	G	A	2.164e^-5	0.049	INTRON yki
3L	16480380	3L_16480380_SNP [dm3] 3L_16487280_SNP [dm6]	A	C	2.171e^-5	0.049	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
3L	17200364	3L_17200364_SNP [dm3] 3L_17207264_SNP [dm6]	C	T	2.171e^-5	0.049	INTRON Rbp6
2L	18595970	2L_18595970_SNP [dm3] 2L_18595970_SNP [dm6]	C	T	2.172e^-5	0.049	DOWNSTREAM amos & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2R	17028347	2R_17028347_SNP [dm3] 2R_21140842_SNP [dm6]	T	A	2.177e^-5	0.049	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	5605724	2L_5605724_SNP [dm3] 2L_5605724_SNP [dm6]	T	A	2.184e^-5	0.049	INTRON CG14010
X	2368255	X_2368255_SNP [dm3] X_2474222_SNP [dm6]	C	T	2.193e^-5	0.049	SYNONYMOUS_CODING trol	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5325082	3L_5325082_SNP [dm3] 3L_5331982_SNP [dm6]	T	G	2.199e^-5	0.049	INTERGENIC
3L	10923944	3L_10923944_SNP [dm3] 3L_10930844_SNP [dm6]	G	A	2.209e^-5	0.049	INTERGENIC
3R	16056156	3R_16056156_SNP [dm3] 3R_20230434_SNP [dm6]	T	G	2.211e^-5	0.049	INTRON Nlg4
3L	9306582	3L_9306582_SNP [dm3] 3L_9313482_SNP [dm6]	G	A	2.221e^-5	0.049	INTERGENIC
3L	11129513	3L_11129513_SNP [dm3] 3L_11136413_SNP [dm6]	A	C	2.230e^-5	0.049	DOWNSTREAM CG14143 INTRON CG32082
2R	4891711	2R_4891711_SNP [dm3] 2R_9004206_SNP [dm6]	G	C	2.234e^-5	0.049	INTRON Np
2R	7694118	2R_7694118_SNP [dm3] 2R_11806613_SNP [dm6]	T	C	2.234e^-5	0.049	INTRON ths
3R	9856788	3R_9856788_SNP [dm3] 3R_14031066_SNP [dm6]	T	C	2.241e^-5	0.05	SYNONYMOUS_CODING Cyp6d5 INTRON rdx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	10638667	2R_10638667_SNP [dm3] 2R_14751162_SNP [dm6]	G	T	2.248e^-5	0.05	NON_SYNONYMOUS_CODING Rpn6 DOWNSTREAM AttB
3R	10281383	3R_10281383_SNP [dm3] 3R_14455661_SNP [dm6]	C	T	2.253e^-5	0.05	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	5373106	3L_5373106_SNP [dm3] 3L_5380006_SNP [dm6]	T	G	2.254e^-5	0.05	SYNONYMOUS_CODING Ir64a
2R	17908977	2R_17908977_INS [dm3] 2R_22021472_INS [dm6]	A	ATGTGGAAAACGGATCCAA...	2.257e^-5	0.05	INTRON CG34370
X	12290174	X_12290174_SNP [dm3] X_12396141_SNP [dm6]	G	T	2.265e^-5	0.05	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6819496	2L_6819496_SNP [dm3] 2L_6819496_SNP [dm6]	C	G	2.268e^-5	0.05	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
2L	1083181	2L_1083181_DEL [dm3] 2L_1083181_DEL [dm6]	CAT	C	2.270e^-5	0.05	UTR_3_PRIME Atg4a & 1 other DOWNSTREAM CG4629
2L	22165180	2L_22165180_INS [dm3] 2L_22165180_INS [dm6]	A	AA	2.282e^-5	0.05	UTR_3_PRIME CG42748 DOWNSTREAM Clamp & 1 other
2R	5104864	2R_5104864_SNP [dm3] 2R_9217359_SNP [dm6]	C	T	2.290e^-5	0.05	INTERGENIC
3R	20356358	3R_20356358_SNP [dm3] 3R_24530636_SNP [dm6]	A	T	2.293e^-5	0.05	UTR_5_PRIME ana1 UPSTREAM ana1 & 1 other DOWNSTREAM CG6607	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19984116	2R_19984116_SNP [dm3] 2R_24096593_SNP [dm6]	G	T	2.296e^-5	0.05	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9093105	2L_9093105_SNP [dm3] 2L_9093105_SNP [dm6]	T	G	2.296e^-5	0.05	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2L	9093106	2L_9093106_SNP [dm3] 2L_9093106_SNP [dm6]	C	A	2.296e^-5	0.05	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	5325882	3L_5325882_SNP [dm3] 3L_5332782_SNP [dm6]	T	C	2.306e^-5	0.05	INTERGENIC
X	18575638	X_18575638_SNP [dm3] X_18681605_SNP [dm6]	T	C	2.313e^-5	0.05	DOWNSTREAM CR44707 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4721083	2R_4721083_SNP [dm3] 2R_8833578_SNP [dm6]	A	C	2.313e^-5	0.05	INTRON sns	TF binding site mE1_TFBS_cad
X	15116363	X_15116363_SNP [dm3] X_15222330_SNP [dm6]	G	C	2.317e^-5	0.05	DOWNSTREAM CG43076 INTERGENIC
3R	13884386	3R_13884386_SNP [dm3] 3R_18058664_SNP [dm6]	A	T	2.331e^-5	0.05	INTERGENIC
3L	17048625	3L_17048625_SNP [dm3] 3L_17055525_SNP [dm6]	C	T	2.340e^-5	0.051	UPSTREAM CG7724 DOWNSTREAM rogdi INTERGENIC	TF binding site mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3L	10613367	3L_10613367_SNP [dm3] 3L_10620267_SNP [dm6]	T	G	2.347e^-5	0.051	INTERGENIC
X	20896551	X_20896551_SNP [dm3] X_21025524_SNP [dm6]	G	A	2.359e^-5	0.051	SYNONYMOUS_CODING r-cup DOWNSTREAM CG1532
2L	92864	2L_92864_SNP [dm3] 2L_92864_SNP [dm6]	C	A	2.369e^-5	0.051	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	7380763	2L_7380763_SNP [dm3] 2L_7380763_SNP [dm6]	T	C	2.373e^-5	0.051	SYNONYMOUS_CODING ninaC
3R	9709028	3R_9709028_SNP [dm3] 3R_13883306_SNP [dm6]	T	A	2.376e^-5	0.051	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21914685	3R_21914685_SNP [dm3] 3R_26088963_SNP [dm6]	A	G	2.384e^-5	0.051	INTRON dys	regulatory region REDfly_CRMs
3R	21918411	3R_21918411_SNP [dm3] 3R_26092689_SNP [dm6]	T	C	2.384e^-5	0.051	DOWNSTREAM CR44319 INTRON dys	regulatory region REDfly_CRMs
3L	11879462	3L_11879462_DEL [dm3] 3L_11886362_DEL [dm6]	TTT	T	2.392e^-5	0.051	DOWNSTREAM CG5897 INTRON CG44837
2R	2728930	2R_2728930_SNP [dm3] 2R_6841425_SNP [dm6]	A	G	2.396e^-5	0.051	UPSTREAM CR44166 INTERGENIC
3L	19669407	3L_19669407_SNP [dm3] 3L_19676307_SNP [dm6]	A	G	2.396e^-5	0.051	INTERGENIC
3R	19322717	3R_19322717_SNP [dm3] 3R_23496995_SNP [dm6]	T	G	2.396e^-5	0.051	INTERGENIC
3L	11581205	3L_11581205_SNP [dm3] 3L_11588105_SNP [dm6]	A	C	2.399e^-5	0.051	UPSTREAM rt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3R	3316899	3R_3316899_SNP [dm3] 3R_7491177_SNP [dm6]	T	C	2.405e^-5	0.051	INTRON alpha-Est10	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	16764704	2R_16764704_DEL [dm3] 2R_20877199_DEL [dm6]	ACCAATG	A	2.412e^-5	0.051	INTRON Ipk1
X	12873539	X_12873539_SNP [dm3] X_12979506_SNP [dm6]	G	T	2.412e^-5	0.051	INTERGENIC
3R	21652679	3R_21652679_INS [dm3] 3R_25826957_INS [dm6]	TG	AATCA	2.422e^-5	0.051	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25465907	3R_25465907_SNP [dm3] 3R_29640185_SNP [dm6]	A	T	2.428e^-5	0.051	INTRON Dop1R2
2L	14244538	2L_14244538_SNP [dm3] 2L_14244538_SNP [dm6]	T	C	2.428e^-5	0.051	INTERGENIC
3R	11957365	3R_11957365_SNP [dm3] 3R_16131643_SNP [dm6]	T	C	2.437e^-5	0.052	INTRON Sb
2L	10338219	2L_10338219_SNP [dm3] 2L_10338219_SNP [dm6]	G	T	2.460e^-5	0.052	INTRON GATAd
3R	16388206	3R_16388206_SNP [dm3] 3R_20562484_SNP [dm6]	T	C	2.467e^-5	0.052	DOWNSTREAM CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	16844980	X_16844980_SNP [dm3] X_16950947_SNP [dm6]	T	C	2.469e^-5	0.052	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
2L	21002174	2L_21002174_SNP [dm3] 2L_21002174_SNP [dm6]	G	T	2.491e^-5	0.052	INTRON CG42238	TF binding site mE1_TFBS_HSA
3L	1273439	3L_1273439_SNP [dm3] 3L_1273439_SNP [dm6]	C	T	2.492e^-5	0.052	INTRON CG9134
3R	10824577	3R_10824577_SNP [dm3] 3R_14998855_SNP [dm6]	A	G	2.495e^-5	0.052	INTERGENIC
3R	10967287	3R_10967287_SNP [dm3] 3R_15141565_SNP [dm6]	T	G	2.495e^-5	0.052	UTR_3_PRIME CG3987 DOWNSTREAM GlyS	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15672046	2R_15672046_SNP [dm3] 2R_19784541_SNP [dm6]	C	T	2.498e^-5	0.052	UPSTREAM Obp56g EXON CR45231	regulatory region REDfly_CRMs
3L	4388133	3L_4388133_SNP [dm3] 3L_4388133_SNP [dm6]	C	A	2.502e^-5	0.052	INTRON slow
3R	18417894	3R_18417894_SNP [dm3] 3R_22592172_SNP [dm6]	C	G	2.518e^-5	0.053	INTRON Efa6	TF binding site BDTNP1_TFBS_dl
2R	4750026	2R_4750026_SNP [dm3] 2R_8862521_SNP [dm6]	A	G	2.522e^-5	0.053	UPSTREAM RyR INTRON RyR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7754240	2R_7754240_SNP [dm3] 2R_11866735_SNP [dm6]	A	G	2.534e^-5	0.053	UPSTREAM CR42532 & 1 other INTERGENIC
2R	9291141	2R_9291141_SNP [dm3] 2R_13403636_SNP [dm6]	G	A	2.535e^-5	0.053	INTERGENIC
3L	6014517	3L_6014517_SNP [dm3] 3L_6021417_SNP [dm6]	A	G	2.538e^-5	0.053	INTRON PVRAP
3L	3980896	3L_3980896_SNP [dm3] 3L_3980896_SNP [dm6]	T	A	2.544e^-5	0.053	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	11280965	3L_11280965_SNP [dm3] 3L_11287865_SNP [dm6]	C	T	2.549e^-5	0.053	DOWNSTREAM CG6175 INTERGENIC
2R	8713815	2R_8713815_SNP [dm3] 2R_12826310_SNP [dm6]	A	G	2.551e^-5	0.053	INTERGENIC
2R	18436912	2R_18436912_SNP [dm3] 2R_22549407_SNP [dm6]	G	A	2.559e^-5	0.053	UPSTREAM CG6018 INTRON px
3R	6157572	3R_6157572_SNP [dm3] 3R_10331850_SNP [dm6]	A	T	2.563e^-5	0.053	UPSTREAM Bruce INTRON CG12818	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
X	14786545	X_14786545_SNP [dm3] X_14892512_SNP [dm6]	T	A	2.564e^-5	0.053	INTRON Flo2 & 1 other
3L	2714498	3L_2714498_SNP [dm3] 3L_2714498_SNP [dm6]	A	C	2.580e^-5	0.053	INTERGENIC
3L	14707059	3L_14707059_SNP [dm3] 3L_14713959_SNP [dm6]	G	A	2.586e^-5	0.053	INTRON ome
3L	20876562	3L_20876562_SNP [dm3] 3L_20883462_SNP [dm6]	T	A	2.587e^-5	0.053	INTRON CG32432
X	15116292	X_15116292_SNP [dm3] X_15222259_SNP [dm6]	A	T	2.595e^-5	0.053	DOWNSTREAM CG43076 INTERGENIC
2R	17294600	2R_17294600_SNP [dm3] 2R_21407095_SNP [dm6]	C	A	2.597e^-5	0.053	INTRON Sdc
3R	17464691	3R_17464691_SNP [dm3] 3R_21638969_SNP [dm6]	C	T	2.604e^-5	0.053	UPSTREAM E2f INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7694116	2R_7694116_SNP [dm3] 2R_11806611_SNP [dm6]	A	T	2.605e^-5	0.053	INTRON ths
3R	5981938	3R_5981938_SNP [dm3] 3R_10156216_SNP [dm6]	C	T	2.615e^-5	0.054	INTRON Invadolysin
2R	13573466	2R_13573466_SNP [dm3] 2R_17685961_SNP [dm6]	C	A	2.620e^-5	0.054	SYNONYMOUS_CODING CG42562 UPSTREAM HPS4 DOWNSTREAM CG42561 INTRON HPS4
2L	14205279	2L_14205279_SNP [dm3] 2L_14205279_SNP [dm6]	A	T	2.621e^-5	0.054	INTRON Dyrk2
3R	2785162	3R_2785162_SNP [dm3] 3R_6959440_SNP [dm6]	C	A	2.646e^-5	0.054	INTRON Antp	TF binding site mE1_TFBS_cad
X	1179897	X_1179897_SNP [dm3] X_1285864_SNP [dm6]	A	G	2.650e^-5	0.054	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_inv
X	1179905	X_1179905_SNP [dm3] X_1285872_SNP [dm6]	G	A	2.650e^-5	0.054	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_inv
2R	4316173	2R_4316173_SNP [dm3] 2R_8428668_SNP [dm6]	C	T	2.669e^-5	0.054	DOWNSTREAM CSN7 INTERGENIC
2R	12294666	2R_12294666_SNP [dm3] 2R_16407161_SNP [dm6]	G	A	2.678e^-5	0.054	INTRON Sema-2b
2R	7438826	2R_7438826_SNP [dm3] 2R_11551321_SNP [dm6]	G	T	2.679e^-5	0.054	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5251814	2R_5251814_SNP [dm3] 2R_9364309_SNP [dm6]	T	G	2.685e^-5	0.054	INTRON CG13954
3L	10890417	3L_10890417_SNP [dm3] 3L_10897317_SNP [dm6]	C	G	2.689e^-5	0.054	INTRON Aps
3L	10890437	3L_10890437_SNP [dm3] 3L_10897337_SNP [dm6]	A	C	2.689e^-5	0.054	INTRON Aps
3L	10890455	3L_10890455_SNP [dm3] 3L_10897355_SNP [dm6]	A	C	2.689e^-5	0.054	INTRON Aps
3L	10890463	3L_10890463_SNP [dm3] 3L_10897363_SNP [dm6]	C	G	2.689e^-5	0.054	INTRON Aps
3L	10891447	3L_10891447_SNP [dm3] 3L_10898347_SNP [dm6]	C	T	2.689e^-5	0.054	UTR_5_PRIME Aps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl mE1_TFBS_zfh1
3L	10892043	3L_10892043_SNP [dm3] 3L_10898943_SNP [dm6]	G	A	2.689e^-5	0.054	UTR_5_PRIME Aps UPSTREAM Aps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	10892347	3L_10892347_SNP [dm3] 3L_10899247_SNP [dm6]	T	A	2.689e^-5	0.054	UPSTREAM Aps INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	10892370	3L_10892370_SNP [dm3] 3L_10899270_SNP [dm6]	A	T	2.689e^-5	0.054	UPSTREAM Aps INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	14889097	2R_14889097_SNP [dm3] 2R_19001592_SNP [dm6]	T	C	2.697e^-5	0.054	SYNONYMOUS_CODING tn	TF binding site mE1_TFBS_HSA
2R	13540067	2R_13540067_SNP [dm3] 2R_17652562_SNP [dm6]	G	A	2.717e^-5	0.055	INTRON CCHa1-R
3R	9444704	3R_9444704_SNP [dm3] 3R_13618982_SNP [dm6]	A	C	2.725e^-5	0.055	UPSTREAM CR45680 INTERGENIC
3R	19970579	3R_19970579_SNP [dm3] 3R_24144857_SNP [dm6]	C	T	2.731e^-5	0.055	INTRON Kal1	TF binding site mE1_TFBS_chinmo
3R	11032087	3R_11032087_SNP [dm3] 3R_15206365_SNP [dm6]	T	C	2.738e^-5	0.055	START_GAINED Spn88Ea UTR_5_PRIME Spn88Ea DOWNSTREAM Spn88Eb	TF binding site mE1_TFBS_inv
2L	2865082	2L_2865082_SNP [dm3] 2L_2865082_SNP [dm6]	G	A	2.747e^-5	0.055	SYNONYMOUS_CODING CG2991	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14306020	2L_14306020_DEL [dm3] 2L_14306020_DEL [dm6]	AA	A	2.760e^-5	0.055	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
3L	7449372	3L_7449372_SNP [dm3] 3L_7456272_SNP [dm6]	A	G	2.761e^-5	0.055	SYNONYMOUS_CODING ppk26	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15771745	3R_15771745_DEL [dm3] 3R_19946023_DEL [dm6]	GGTCTGGCAGAGGTATTTAT...	G	2.765e^-5	0.055	INTRON Hs6st
2L	2433008	2L_2433008_SNP [dm3] 2L_2433008_SNP [dm6]	G	A	2.776e^-5	0.055	INTRON dpp
2L	890437	2L_890437_DEL [dm3] 2L_890437_DEL [dm6]	ATTTGAA	A	2.778e^-5	0.055	INTERGENIC
2R	17648810	2R_17648810_SNP [dm3] 2R_21761305_SNP [dm6]	A	C	2.778e^-5	0.055	INTERGENIC
3L	7585045	3L_7585045_SNP [dm3] 3L_7591945_SNP [dm6]	C	T	2.778e^-5	0.055	UPSTREAM CG7716 INTERGENIC
X	17039023	X_17039023_SNP [dm3] X_17144990_SNP [dm6]	A	C	2.778e^-5	0.055	UPSTREAM snoRNA:Psi28S-1192d & 4 others DOWNSTREAM snoRNA:Psi18S-1854c & 4 others INTRON RpS5a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21910037	3R_21910037_SNP [dm3] 3R_26084315_SNP [dm6]	C	T	2.784e^-5	0.055	INTRON dys
2L	7963046	2L_7963046_SNP [dm3] 2L_7963046_SNP [dm6]	A	G	2.787e^-5	0.055	INTRON Snoo
X	14059530	X_14059530_SNP [dm3] X_14165497_SNP [dm6]	T	G	2.808e^-5	0.055	INTERGENIC
2L	12773484	2L_12773484_SNP [dm3] 2L_12773484_SNP [dm6]	C	A	2.818e^-5	0.056	INTERGENIC
3R	13553023	3R_13553023_SNP [dm3] 3R_17727301_SNP [dm6]	G	T	2.819e^-5	0.056	INTRON Lgr1
2L	14205277	2L_14205277_SNP [dm3] 2L_14205277_SNP [dm6]	C	A	2.825e^-5	0.056	INTRON Dyrk2
3R	20059031	3R_20059031_SNP [dm3] 3R_24233309_SNP [dm6]	A	C	2.828e^-5	0.056	INTRON mask	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16719974	3L_16719974_SNP [dm3] 3L_16726874_SNP [dm6]	C	T	2.844e^-5	0.056	SYNONYMOUS_CODING PGRP-SB2 UPSTREAM CG13026 DOWNSTREAM PGRP-SB1
3R	12589755	3R_12589755_SNP [dm3] 3R_16764033_SNP [dm6]	A	G	2.857e^-5	0.056	UPSTREAM tre-3 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	10219059	3R_10219059_SNP [dm3] 3R_14393337_SNP [dm6]	A	T	2.860e^-5	0.056	NON_SYNONYMOUS_CODING cv-c
3L	4245870	3L_4245870_SNP [dm3] 3L_4245870_SNP [dm6]	C	A	2.868e^-5	0.056	UTR_3_PRIME pav DOWNSTREAM ago
3R	21903966	3R_21903966_SNP [dm3] 3R_26078244_SNP [dm6]	G	T	2.871e^-5	0.056	SYNONYMOUS_CODING dys	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15424512	2R_15424512_SNP [dm3] 2R_19537007_SNP [dm6]	C	T	2.878e^-5	0.056	INTRON sm
3L	8448641	3L_8448641_SNP [dm3] 3L_8455541_SNP [dm6]	T	G	2.904e^-5	0.057	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5782767	3L_5782767_SNP [dm3] 3L_5789667_SNP [dm6]	A	G	2.928e^-5	0.057	DOWNSTREAM Bre1 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	12009263	3R_12009263_SNP [dm3] 3R_16183541_SNP [dm6]	T	G	2.933e^-5	0.057	INTRON CG8927
2L	7939884	2L_7939884_SNP [dm3] 2L_7939884_SNP [dm6]	T	A	2.935e^-5	0.057	INTRON Snoo
3L	18110392	3L_18110392_SNP [dm3] 3L_18117292_SNP [dm6]	C	T	2.953e^-5	0.057	UTR_3_PRIME CG32195 INTRON CG7341
3R	12025859	3R_12025859_SNP [dm3] 3R_16200137_SNP [dm6]	C	T	2.955e^-5	0.057	INTRON CG6126
3L	3980900	3L_3980900_INS [dm3] 3L_3980900_INS [dm6]	A	AATACCTATAAG...	2.961e^-5	0.057	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	17171818	3L_17171818_SNP [dm3] 3L_17178718_SNP [dm6]	C	A	2.961e^-5	0.057	INTRON Rbp6
3R	12191213	3R_12191213_SNP [dm3] 3R_16365491_SNP [dm6]	C	G	2.965e^-5	0.057	INTRON CG14880	regulatory region REDfly_CRMs
X	18950497	X_18950497_SNP [dm3] X_19056464_SNP [dm6]	C	A	2.971e^-5	0.057	UPSTREAM CG14190 INTERGENIC
3L	13285071	3L_13285071_SNP [dm3] 3L_13291971_SNP [dm6]	T	A	2.979e^-5	0.058	UPSTREAM CR43912 INTERGENIC
3L	4275260	3L_4275260_SNP [dm3] 3L_4275260_SNP [dm6]	T	C	2.998e^-5	0.058	NON_SYNONYMOUS_CODING CG1273
3R	22251940	3R_22251940_SNP [dm3] 3R_26426218_SNP [dm6]	C	T	3.001e^-5	0.058	UPSTREAM CG34291 INTRON CR31084
X	18576080	X_18576080_SNP [dm3] X_18682047_SNP [dm6]	A	G	3.011e^-5	0.058	DOWNSTREAM CR44707 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	21861956	X_21861956_SNP [dm3] X_22460120_SNP [dm6]	G	T	3.013e^-5	0.058	INTRON CG14619	transposable element FlyBase
3R	26054033	3R_26054033_SNP [dm3] 3R_30228311_SNP [dm6]	G	A	3.025e^-5	0.058	INTERGENIC
3L	16738960	3L_16738960_SNP [dm3] 3L_16745860_SNP [dm6]	C	G	3.025e^-5	0.058	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	9529800	2R_9529800_DEL [dm3] 2R_13642295_DEL [dm6]	TT	T	3.031e^-5	0.058	INTRON fas
3R	12241212	3R_12241212_SNP [dm3] 3R_16415490_SNP [dm6]	G	A	3.035e^-5	0.058	INTERGENIC	regulatory region REDfly_CRMs
X	16894187	X_16894187_SNP [dm3] X_17000154_SNP [dm6]	A	T	3.040e^-5	0.058	INTRON CG45002
3R	5536927	3R_5536927_SNP [dm3] 3R_9711205_SNP [dm6]	T	A	3.051e^-5	0.058	UTR_5_PRIME dmt UPSTREAM trbd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	11647384	3L_11647384_SNP [dm3] 3L_11654284_SNP [dm6]	C	G	3.052e^-5	0.058	INTRON CG32085
3L	7102917	3L_7102917_SNP [dm3] 3L_7109817_SNP [dm6]	T	A	3.052e^-5	0.058	INTRON form3
3L	7102919	3L_7102919_SNP [dm3] 3L_7109819_SNP [dm6]	T	G	3.052e^-5	0.058	INTRON form3
3L	7102921	3L_7102921_SNP [dm3] 3L_7109821_SNP [dm6]	T	C	3.052e^-5	0.058	INTRON form3
3L	7102930	3L_7102930_SNP [dm3] 3L_7109830_SNP [dm6]	C	G	3.052e^-5	0.058	INTRON form3
3L	7102932	3L_7102932_DEL [dm3] 3L_7109832_DEL [dm6]	TT	C	3.052e^-5	0.058	INTRON form3
3L	7102935	3L_7102935_SNP [dm3] 3L_7109835_SNP [dm6]	T	A	3.052e^-5	0.058	INTRON form3
3L	7102945	3L_7102945_SNP [dm3] 3L_7109845_SNP [dm6]	T	C	3.052e^-5	0.058	INTRON form3
3L	7102965	3L_7102965_SNP [dm3] 3L_7109865_SNP [dm6]	A	T	3.052e^-5	0.058	INTRON form3
2R	4043139	2R_4043139_DEL [dm3] 2R_8155634_DEL [dm6]	GTTTTTTTGTGACGCATTGC...	G	3.054e^-5	0.058	INTRON Lpin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	12177470	2L_12177470_SNP [dm3] 2L_12177470_SNP [dm6]	G	T	3.059e^-5	0.058	INTRON aret & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	18139044	2R_18139044_SNP [dm3] 2R_22251539_SNP [dm6]	G	T	3.073e^-5	0.058	INTRON dve
3R	12602620	3R_12602620_SNP [dm3] 3R_16776898_SNP [dm6]	T	C	3.086e^-5	0.058	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10881976	3L_10881976_SNP [dm3] 3L_10888876_SNP [dm6]	C	T	3.089e^-5	0.058	INTERGENIC
X	21216226	X_21216226_SNP [dm3] X_21345199_SNP [dm6]	T	A	3.091e^-5	0.058	UPSTREAM dod DOWNSTREAM fliI INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17420748	3R_17420748_SNP [dm3] 3R_21595026_SNP [dm6]	A	C	3.103e^-5	0.058	DOWNSTREAM CR43653 INTRON InR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20192687	3R_20192687_SNP [dm3] 3R_24366965_SNP [dm6]	T	C	3.103e^-5	0.058	NON_SYNONYMOUS_CODING CG42811 DOWNSTREAM CG13613 & 1 other	TF binding site mE1_TFBS_inv
X	12483933	X_12483933_SNP [dm3] X_12589900_SNP [dm6]	G	A	3.124e^-5	0.059	SYNONYMOUS_CODING LIMK1 UPSTREAM LIMK1
3L	16873250	3L_16873250_SNP [dm3] 3L_16880150_SNP [dm6]	C	G	3.132e^-5	0.059	DOWNSTREAM CG32170 INTRON Lmpt
2L	4916585	2L_4916585_SNP [dm3] 2L_4916585_SNP [dm6]	G	A	3.140e^-5	0.059	INTRON hoe1
X	18950498	X_18950498_SNP [dm3] X_19056465_SNP [dm6]	C	T	3.143e^-5	0.059	UPSTREAM CG14190 INTERGENIC
2R	13655974	2R_13655974_SNP [dm3] 2R_17768469_SNP [dm6]	A	T	3.149e^-5	0.059	SYNONYMOUS_CODING CG18635 UPSTREAM CG14488	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10906341	2L_10906341_SNP [dm3] 2L_10906341_SNP [dm6]	C	A	3.151e^-5	0.059	UTR_3_PRIME CG7309
3L	16020049	3L_16020049_SNP [dm3] 3L_16026949_SNP [dm6]	C	A	3.153e^-5	0.059	INTRON Notum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	10766979	2R_10766979_SNP [dm3] 2R_14879474_SNP [dm6]	C	A	3.153e^-5	0.059	UTR_3_PRIME Cyp6a19 & 1 other
2L	85608	2L_85608_SNP [dm3] 2L_85608_SNP [dm6]	A	G	3.153e^-5	0.059	INTRON net	TF binding site mE1_TFBS_cad
3R	6641460	3R_6641460_SNP [dm3] 3R_10815738_SNP [dm6]	G	T	3.157e^-5	0.059	SYNONYMOUS_CODING CG4089 UPSTREAM CG14693	TF binding site mE1_TFBS_sens

By genomic position
Variant impact
Gene name

Microbiota_OTU018 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results