DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.811e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.02191

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	7.1163	0.0285

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1924 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	2436373	X_2436373_SNP [dm3] X_2542340_SNP [dm6]	G	C	2.607e^-7	0.251	INTRON trol	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	23538649	3R_23538649_SNP [dm3] 3R_27712927_SNP [dm6]	C	G	2.972e^-7	0.251	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	14633266	2L_14633266_SNP [dm3] 2L_14633266_SNP [dm6]	C	A	5.685e^-7	0.251	INTRON osp
3L	11213323	3L_11213323_SNP [dm3] 3L_11220223_SNP [dm6]	A	C	6.709e^-7	0.251	INTRON CG42671	TF binding site mE1_TFBS_cad
3R	19532231	3R_19532231_SNP [dm3] 3R_23706509_SNP [dm6]	A	G	6.746e^-7	0.251	INTRON CR44052 & 1 other
2L	1231684	2L_1231684_DEL [dm3] 2L_1231684_DEL [dm6]	AA	A	9.361e^-7	0.252	INTERGENIC
3R	19530790	3R_19530790_SNP [dm3] 3R_23705068_SNP [dm6]	C	T	1.002e^-6	0.252	SYNONYMOUS_CODING CG31414 DOWNSTREAM CG31413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23373731	3R_23373731_DEL [dm3] 3R_27548009_DEL [dm6]	TGTT	T	1.084e^-6	0.252	UTR_3_PRIME Klp98A DOWNSTREAM Gr98d	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
X	16343490	X_16343490_SNP [dm3] X_16449457_SNP [dm6]	G	A	1.373e^-6	0.284	UTR_5_PRIME Rbp2 INTRON Rbp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	12771671	X_12771671_SNP [dm3] X_12877638_SNP [dm6]	T	G	1.745e^-6	0.324	INTRON Pde9
3R	21365747	3R_21365747_DEL [dm3] 3R_25540025_DEL [dm6]	GAGCTATCCGAG...	G	2.243e^-6	0.324	INTRON msi
X	9762803	X_9762803_SNP [dm3] X_9868770_SNP [dm6]	T	C	2.355e^-6	0.324	UPSTREAM CG45060 INTERGENIC
X	18865652	X_18865652_SNP [dm3] X_18971619_SNP [dm6]	G	T	2.769e^-6	0.324	INTRON CG43759
2L	1231760	2L_1231760_SNP [dm3] 2L_1231760_SNP [dm6]	G	T	2.826e^-6	0.324	INTERGENIC
2L	1231767	2L_1231767_DEL [dm3] 2L_1231767_DEL [dm6]	CT	A	2.826e^-6	0.324	INTERGENIC
2R	15468087	2R_15468087_SNP [dm3] 2R_19580582_SNP [dm6]	G	C	2.882e^-6	0.324	INTRON sm
2L	18262485	2L_18262485_SNP [dm3] 2L_18262485_SNP [dm6]	T	G	3.341e^-6	0.324	UPSTREAM CR44901 INTRON CG42750
2R	2833828	2R_2833828_SNP [dm3] 2R_6946323_SNP [dm6]	G	T	3.416e^-6	0.324	DOWNSTREAM tRNA:K2:42Ea INTRON mim & 1 other
3R	19600426	3R_19600426_SNP [dm3] 3R_23774704_SNP [dm6]	G	A	3.967e^-6	0.324	SYNONYMOUS_CODING Nup98-96 UPSTREAM CG10208	TF binding site mE1_TFBS_HSA
2L	10943390	2L_10943390_SNP [dm3] 2L_10943390_SNP [dm6]	A	C	4.004e^-6	0.324	UPSTREAM CR44492 INTRON dpr2 EXON CR44493
3R	27287037	3R_27287037_SNP [dm3] 3R_31461315_SNP [dm6]	C	A	4.018e^-6	0.324	INTRON CG11334
X	8757632	X_8757632_SNP [dm3] X_8863599_SNP [dm6]	C	A	4.019e^-6	0.324	UPSTREAM CG12075 INTRON CG12075
3R	18605557	3R_18605557_DEL [dm3] 3R_22779835_DEL [dm6]	GAGC	CG	4.179e^-6	0.324	UPSTREAM CR43654 INTRON CG7029 EXON CR43654	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25064853	3R_25064853_INS [dm3] 3R_29239131_INS [dm6]	T	TGTAT	4.579e^-6	0.324	UTR_3_PRIME CG31427 UPSTREAM CG11951 INTRON CG31427
2L	16010268	2L_16010268_SNP [dm3] 2L_16010268_SNP [dm6]	C	A	4.707e^-6	0.324	INTRON beat-Ic
2L	15433147	2L_15433147_SNP [dm3] 2L_15433147_SNP [dm6]	G	A	4.757e^-6	0.324	UPSTREAM CG4161 INTERGENIC
2L	15433162	2L_15433162_SNP [dm3] 2L_15433162_SNP [dm6]	G	C	4.757e^-6	0.324	UPSTREAM CG4161 INTERGENIC
3L	3293635	3L_3293635_SNP [dm3] 3L_3293635_SNP [dm6]	A	G	4.881e^-6	0.324	INTRON CG12009
3R	25150265	3R_25150265_SNP [dm3] 3R_29324543_SNP [dm6]	T	C	5.493e^-6	0.352	INTERGENIC
2R	11886156	2R_11886156_SNP [dm3] 2R_15998651_SNP [dm6]	T	G	5.877e^-6	0.354	INTRON ATPCL
2R	9015391	2R_9015391_SNP [dm3] 2R_13127886_SNP [dm6]	A	G	6.194e^-6	0.354	DOWNSTREAM CG3955 INTERGENIC
2L	11942092	2L_11942092_SNP [dm3] 2L_11942092_SNP [dm6]	G	A	6.274e^-6	0.354	INTERGENIC	regulatory region REDfly_CRMs
X	5393192	X_5393192_DEL [dm3] X_5499159_DEL [dm6]	TGGAATTGTT	T	6.511e^-6	0.354	INTERGENIC
X	5393205	X_5393205_SNP [dm3] X_5499172_SNP [dm6]	C	T	6.511e^-6	0.354	INTERGENIC
2L	11219035	2L_11219035_SNP [dm3] 2L_11219035_SNP [dm6]	C	A	6.661e^-6	0.354	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26600817	3R_26600817_SNP [dm3] 3R_30775095_SNP [dm6]	C	A	7.174e^-6	0.366	INTRON zfh1	TF binding site mE1_TFBS_cad
X	13689581	X_13689581_SNP [dm3] X_13795548_SNP [dm6]	A	T	7.278e^-6	0.366	DOWNSTREAM CG10996 INTRON inaE
X	5393187	X_5393187_SNP [dm3] X_5499154_SNP [dm6]	C	A	7.754e^-6	0.374	INTERGENIC
X	13971252	X_13971252_INS [dm3] X_14077219_INS [dm6]	A	AA	7.841e^-6	0.374	INTERGENIC	TF binding site mE1_TFBS_HSA
X	3983021	X_3983021_SNP [dm3] X_4088988_SNP [dm6]	C	A	8.927e^-6	0.415	INTRON CG43689	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11886138	2R_11886138_SNP [dm3] 2R_15998633_SNP [dm6]	A	C	9.769e^-6	0.443	INTRON ATPCL
3L	11213350	3L_11213350_SNP [dm3] 3L_11220250_SNP [dm6]	A	G	1.048e^-5	0.458	INTRON CG42671	TF binding site mE1_TFBS_cad
3R	21670080	3R_21670080_SNP [dm3] 3R_25844358_SNP [dm6]	G	A	1.070e^-5	0.458	EXON CR45653
2L	1231441	2L_1231441_SNP [dm3] 2L_1231441_SNP [dm6]	T	C	1.083e^-5	0.458	INTERGENIC
2R	11886172	2R_11886172_SNP [dm3] 2R_15998667_SNP [dm6]	G	A	1.155e^-5	0.477	INTRON ATPCL
2L	14633263	2L_14633263_DEL [dm3] 2L_14633263_DEL [dm6]	CG	C	1.212e^-5	0.482	INTRON osp
3R	13821503	3R_13821503_SNP [dm3] 3R_17995781_SNP [dm6]	T	A	1.217e^-5	0.482	INTRON cpo
3R	23410655	3R_23410655_SNP [dm3] 3R_27584933_SNP [dm6]	G	A	1.244e^-5	0.482	NON_SYNONYMOUS_CODING raps	TF binding site mE1_TFBS_chinmo
2R	12963726	2R_12963726_DEL [dm3] 2R_17076221_DEL [dm6]	ACA	A	1.274e^-5	0.484	UPSTREAM CG30460 INTRON CG30460	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	677700	3L_677700_SNP [dm3] 3L_677700_SNP [dm6]	T	A	1.324e^-5	0.493	DOWNSTREAM CG17129 INTERGENIC
2R	997991	2R_997991_SNP [dm3] 2R_5110486_SNP [dm6]	T	C	1.449e^-5	0.506	INTERGENIC
3R	19254668	3R_19254668_SNP [dm3] 3R_23428946_SNP [dm6]	G	A	1.488e^-5	0.506	INTRON CG4374	TF binding site BDTNP1_TFBS_prd
X	7473703	X_7473703_SNP [dm3] X_7579670_SNP [dm6]	T	C	1.488e^-5	0.506	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24035602	3R_24035602_SNP [dm3] 3R_28209880_SNP [dm6]	T	A	1.499e^-5	0.506	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	986092	2R_986092_SNP [dm3] 2R_5098587_SNP [dm6]	C	T	1.517e^-5	0.506	INTERGENIC	transposable element FlyBase
3R	23635755	3R_23635755_SNP [dm3] 3R_27810033_SNP [dm6]	T	G	1.523e^-5	0.506	INTRON CG34353
2R	12822743	2R_12822743_SNP [dm3] 2R_16935238_SNP [dm6]	C	T	1.595e^-5	0.521	INTRON Pkc53E
2L	11942094	2L_11942094_SNP [dm3] 2L_11942094_SNP [dm6]	A	G	1.652e^-5	0.53	INTERGENIC	regulatory region REDfly_CRMs
2R	969917	2R_969917_SNP [dm3] 2R_5082412_SNP [dm6]	C	A	1.755e^-5	0.553	EXON CR43360	TF binding site mE1_TFBS_cad
3L	18658495	3L_18658495_SNP [dm3] 3L_18665395_SNP [dm6]	G	A	1.803e^-5	0.559	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16010229	2L_16010229_SNP [dm3] 2L_16010229_SNP [dm6]	A	G	1.876e^-5	0.561	INTRON beat-Ic
2L	16010234	2L_16010234_SNP [dm3] 2L_16010234_SNP [dm6]	A	G	1.876e^-5	0.561	INTRON beat-Ic
3L	7746389	3L_7746389_SNP [dm3] 3L_7753289_SNP [dm6]	A	T	1.899e^-5	0.561	INTRON CG32373
2L	12203789	2L_12203789_SNP [dm3] 2L_12203789_SNP [dm6]	A	C	1.963e^-5	0.561	INTRON aret
2L	17056509	2L_17056509_SNP [dm3] 2L_17056509_SNP [dm6]	A	G	1.978e^-5	0.561	INTERGENIC
2L	4486067	2L_4486067_SNP [dm3] 2L_4486067_SNP [dm6]	T	A	1.991e^-5	0.561	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	23014876	3R_23014876_SNP [dm3] 3R_27189154_SNP [dm6]	G	T	2.131e^-5	0.564	INTRON Ser	regulatory region REDfly_CRMs
2L	1232900	2L_1232900_SNP [dm3] 2L_1232900_SNP [dm6]	G	A	2.161e^-5	0.564	INTERGENIC
3L	6339966	3L_6339966_SNP [dm3] 3L_6346866_SNP [dm6]	A	G	2.214e^-5	0.564	INTRON CG13300
2R	12962322	2R_12962322_SNP [dm3] 2R_17074817_SNP [dm6]	G	A	2.219e^-5	0.564	INTRON CG30460
3L	18359565	3L_18359565_SNP [dm3] 3L_18366465_SNP [dm6]	T	A	2.221e^-5	0.564	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	17067234	2L_17067234_SNP [dm3] 2L_17067234_SNP [dm6]	T	G	2.222e^-5	0.564	INTERGENIC
2R	2835140	2R_2835140_SNP [dm3] 2R_6947635_SNP [dm6]	T	C	2.229e^-5	0.564	UPSTREAM tRNA:K2:42Ea DOWNSTREAM tRNA:K2:42Eb & 1 other INTRON mim & 1 other
3R	24424135	3R_24424135_SNP [dm3] 3R_28598413_SNP [dm6]	T	A	2.266e^-5	0.564	SYNONYMOUS_CODING Noa36	TF binding site mE1_TFBS_sens
3L	13908933	3L_13908933_SNP [dm3] 3L_13915833_SNP [dm6]	A	T	2.298e^-5	0.564	INTRON Rgl
3R	25444997	3R_25444997_SNP [dm3] 3R_29619275_SNP [dm6]	G	T	2.303e^-5	0.564	START_GAINED CG1907 UTR_5_PRIME CG1907	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	19692709	3L_19692709_SNP [dm3] 3L_19699609_SNP [dm6]	T	A	2.402e^-5	0.566	INTERGENIC
3L	5180899	3L_5180899_SNP [dm3] 3L_5187799_SNP [dm6]	T	A	2.424e^-5	0.566	INTRON shep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	1828827	3L_1828827_SNP [dm3] 3L_1828827_SNP [dm6]	A	T	2.431e^-5	0.566	UTR_5_PRIME Cpr62Ba INTRON Cpr62Ba
X	12850893	X_12850893_SNP [dm3] X_12956860_SNP [dm6]	G	A	2.440e^-5	0.566	INTRON hec
3L	14523237	3L_14523237_SNP [dm3] 3L_14530137_SNP [dm6]	A	T	2.464e^-5	0.566	INTRON bbg
3L	20249843	3L_20249843_SNP [dm3] 3L_20256743_SNP [dm6]	T	C	2.598e^-5	0.569	INTRON rdgC	TF binding site BDTNP1_TFBS_twi
3L	14523243	3L_14523243_SNP [dm3] 3L_14530143_SNP [dm6]	C	G	2.613e^-5	0.569	INTRON bbg
3L	14523259	3L_14523259_SNP [dm3] 3L_14530159_SNP [dm6]	C	A	2.613e^-5	0.569	INTRON bbg
2R	13996299	2R_13996299_SNP [dm3] 2R_18108794_SNP [dm6]	A	C	2.616e^-5	0.569	UPSTREAM CG5756 INTERGENIC
3R	17365784	3R_17365784_SNP [dm3] 3R_21540062_SNP [dm6]	A	C	2.643e^-5	0.569	INTERGENIC
2R	8417564	2R_8417564_SNP [dm3] 2R_12530059_SNP [dm6]	A	C	2.667e^-5	0.569	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	19888635	X_19888635_SNP [dm3] X_19994602_SNP [dm6]	C	T	2.711e^-5	0.569	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	977056	2R_977056_SNP [dm3] 2R_5089551_SNP [dm6]	G	A	2.739e^-5	0.569	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
3L	7952792	3L_7952792_SNP [dm3] 3L_7959692_SNP [dm6]	A	C	2.753e^-5	0.569	INTERGENIC
2R	12965013	2R_12965013_SNP [dm3] 2R_17077508_SNP [dm6]	C	A	2.791e^-5	0.571	INTRON CG30460
3L	14327479	3L_14327479_SNP [dm3] 3L_14334379_SNP [dm6]	C	T	2.832e^-5	0.572	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23335935	3R_23335935_SNP [dm3] 3R_27510213_SNP [dm6]	A	G	2.859e^-5	0.572	INTERGENIC
2L	12118083	2L_12118083_SNP [dm3] 2L_12118083_SNP [dm6]	T	G	2.907e^-5	0.575	INTRON CG17211
3L	12263165	3L_12263165_SNP [dm3] 3L_12270065_SNP [dm6]	C	T	3.034e^-5	0.582	UTR_3_PRIME Pbgs DOWNSTREAM CG32100
2R	19208828	2R_19208828_SNP [dm3] 2R_23321305_SNP [dm6]	C	G	3.065e^-5	0.582	DOWNSTREAM CG30416 INTERGENIC
2R	19208831	2R_19208831_SNP [dm3] 2R_23321308_SNP [dm6]	T	C	3.065e^-5	0.582	DOWNSTREAM CG30416 INTERGENIC
2R	19208840	2R_19208840_SNP [dm3] 2R_23321317_SNP [dm6]	G	A	3.065e^-5	0.582	DOWNSTREAM CG30416 INTERGENIC
3L	2771152	3L_2771152_SNP [dm3] 3L_2771152_SNP [dm6]	G	A	3.258e^-5	0.612	INTRON CG9977	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11268852	3R_11268852_SNP [dm3] 3R_15443130_SNP [dm6]	T	A	3.398e^-5	0.619	UTR_3_PRIME AdamTS-A DOWNSTREAM Act88F	TF binding site mE1_TFBS_cad
2R	13996295	2R_13996295_SNP [dm3] 2R_18108790_SNP [dm6]	T	A	3.471e^-5	0.619	UPSTREAM CG5756 INTERGENIC
2R	16775707	2R_16775707_SNP [dm3] 2R_20888202_SNP [dm6]	A	T	3.471e^-5	0.619	INTRON otp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12110705	2L_12110705_MNP [dm3] 2L_12110705_MNP [dm6]	ACC	GTT	3.474e^-5	0.619	UPSTREAM Phae2 DOWNSTREAM Phae1 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	998486	2R_998486_SNP [dm3] 2R_5110981_SNP [dm6]	C	A	3.503e^-5	0.619	INTERGENIC
2R	2832061	2R_2832061_SNP [dm3] 2R_6944556_SNP [dm6]	T	C	3.515e^-5	0.619	UPSTREAM CheB42b DOWNSTREAM CheB42c INTRON mim
2L	18266220	2L_18266220_DEL [dm3] 2L_18266220_DEL [dm6]	CTTT	C	3.534e^-5	0.619	INTRON CG42750
3R	14553971	3R_14553971_SNP [dm3] 3R_18728249_SNP [dm6]	A	G	3.640e^-5	0.619	SYNONYMOUS_CODING CG7715 INTRON Cha	TF binding site mE1_TFBS_chinmo
3L	16564143	3L_16564143_SNP [dm3] 3L_16571043_SNP [dm6]	G	A	3.647e^-5	0.619	INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13908904	3L_13908904_SNP [dm3] 3L_13915804_SNP [dm6]	G	C	3.704e^-5	0.619	INTRON Rgl
3L	4108562	3L_4108562_SNP [dm3] 3L_4108562_SNP [dm6]	T	C	3.730e^-5	0.619	UTR_5_PRIME Ack	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10782562	X_10782562_SNP [dm3] X_10888529_SNP [dm6]	C	T	3.738e^-5	0.619	INTRON Ork1
2L	15433167	2L_15433167_SNP [dm3] 2L_15433167_SNP [dm6]	C	T	3.756e^-5	0.619	UPSTREAM CG4161 INTERGENIC
3R	18606126	3R_18606126_SNP [dm3] 3R_22780404_SNP [dm6]	C	A	3.806e^-5	0.619	UPSTREAM CR43654 INTRON CG7029 EXON CR43654	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23324466	3R_23324466_SNP [dm3] 3R_27498744_SNP [dm6]	T	A	3.845e^-5	0.619	INTERGENIC
3R	14553131	3R_14553131_SNP [dm3] 3R_18727409_SNP [dm6]	T	C	3.856e^-5	0.619	UPSTREAM CG7714 DOWNSTREAM CG7715 INTRON Cha
2R	8900997	2R_8900997_SNP [dm3] 2R_13013492_SNP [dm6]	A	T	3.863e^-5	0.619	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22275508	3R_22275508_SNP [dm3] 3R_26449786_SNP [dm6]	A	G	3.952e^-5	0.628	SYNONYMOUS_CODING Hex-t1 UPSTREAM Hex-t2 DOWNSTREAM tx	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2799969	2R_2799969_SNP [dm3] 2R_6912464_SNP [dm6]	C	T	4.079e^-5	0.643	INTRON CG30158
2L	16056120	2L_16056120_SNP [dm3] 2L_16056120_SNP [dm6]	C	A	4.163e^-5	0.651	INTRON beat-Ia
2L	6051033	2L_6051033_SNP [dm3] 2L_6051033_SNP [dm6]	C	A	4.346e^-5	0.664	UTR_5_PRIME CG9135 DOWNSTREAM CG12393 INTRON CG9135	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
3R	13822797	3R_13822797_DEL [dm3] 3R_17997075_DEL [dm6]	CAT	C	4.356e^-5	0.664	INTRON cpo
3L	4839102	3L_4839102_SNP [dm3] 3L_4839102_SNP [dm6]	T	C	4.357e^-5	0.664	UTR_5_PRIME CG13707 INTRON CG13707
3R	25209280	3R_25209280_SNP [dm3] 3R_29383558_SNP [dm6]	G	A	4.441e^-5	0.67	INTRON Ptp99A
3R	19535746	3R_19535746_SNP [dm3] 3R_23710024_SNP [dm6]	G	C	4.508e^-5	0.67	UPSTREAM CG10301 INTERGENIC
3R	25609311	3R_25609311_SNP [dm3] 3R_29783589_SNP [dm6]	T	G	4.532e^-5	0.67	INTRON kay	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	25609320	3R_25609320_INS [dm3] 3R_29783598_INS [dm6]	G	GG	4.542e^-5	0.67	INTRON kay	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	1230885	2L_1230885_SNP [dm3] 2L_1230885_SNP [dm6]	G	A	4.571e^-5	0.67	INTERGENIC
2L	16374949	2L_16374949_SNP [dm3] 2L_16374949_SNP [dm6]	A	G	4.657e^-5	0.672	INTERGENIC
2R	13860446	2R_13860446_SNP [dm3] 2R_17972941_SNP [dm6]	T	C	4.659e^-5	0.672	INTERGENIC
3L	17465478	3L_17465478_SNP [dm3] 3L_17472378_SNP [dm6]	A	C	4.710e^-5	0.674	INTRON CG7589
2R	16911111	2R_16911111_SNP [dm3] 2R_21023606_SNP [dm6]	G	A	4.789e^-5	0.68	INTRON RIC-3
2R	16523009	2R_16523009_SNP [dm3] 2R_20635504_SNP [dm6]	C	T	5.036e^-5	0.69	SYNONYMOUS_CODING rig UPSTREAM CG13436	TF binding site mE1_TFBS_cad
2L	5448504	2L_5448504_SNP [dm3] 2L_5448504_SNP [dm6]	G	A	5.072e^-5	0.69	INTERGENIC
2L	19143061	2L_19143061_DEL [dm3] 2L_19143061_DEL [dm6]	GT	G	5.092e^-5	0.69	INTRON brat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19143064	2L_19143064_SNP [dm3] 2L_19143064_SNP [dm6]	C	G	5.092e^-5	0.69	INTRON brat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19143073	2L_19143073_INS [dm3] 2L_19143073_INS [dm6]	C	CTGATTGTC	5.092e^-5	0.69	INTRON brat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17365837	3R_17365837_SNP [dm3] 3R_21540115_SNP [dm6]	T	C	5.258e^-5	0.69	INTERGENIC
3R	17365855	3R_17365855_SNP [dm3] 3R_21540133_SNP [dm6]	A	T	5.258e^-5	0.69	INTERGENIC
3R	21189772	3R_21189772_SNP [dm3] 3R_25364050_SNP [dm6]	A	T	5.260e^-5	0.69	INTRON Fur1
2L	10396546	2L_10396546_SNP [dm3] 2L_10396546_SNP [dm6]	A	G	5.280e^-5	0.69	UPSTREAM Cnot4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	5178183	3L_5178183_SNP [dm3] 3L_5185083_SNP [dm6]	G	A	5.318e^-5	0.69	UPSTREAM shep INTRON shep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	14275053	2R_14275053_SNP [dm3] 2R_18387548_SNP [dm6]	T	C	5.321e^-5	0.69	UPSTREAM IM3 DOWNSTREAM IM2 INTERGENIC
3L	8139938	3L_8139938_SNP [dm3] 3L_8146838_SNP [dm6]	A	T	5.336e^-5	0.69	INTRON CG13676
2R	12822814	2R_12822814_SNP [dm3] 2R_16935309_SNP [dm6]	T	G	5.360e^-5	0.69	INTRON Pkc53E
3R	21220389	3R_21220389_SNP [dm3] 3R_25394667_SNP [dm6]	G	C	5.377e^-5	0.69	INTRON Fur1
3R	23949848	3R_23949848_SNP [dm3] 3R_28124126_SNP [dm6]	C	T	5.466e^-5	0.696	INTERGENIC
3R	25338202	3R_25338202_SNP [dm3] 3R_29512480_SNP [dm6]	C	T	5.517e^-5	0.698	INTERGENIC
3R	22844068	3R_22844068_SNP [dm3] 3R_27018346_SNP [dm6]	A	C	5.620e^-5	0.703	UPSTREAM CG17192 DOWNSTREAM CG17191 INTRON RYa-R
2L	10452065	2L_10452065_INS [dm3] 2L_10452065_INS [dm6]	A	AA	5.678e^-5	0.703	DOWNSTREAM CG5322 INTRON ppk10
2L	6697504	2L_6697504_SNP [dm3] 2L_6697504_SNP [dm6]	A	T	5.738e^-5	0.703	INTRON Tsp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	10847476	3R_10847476_SNP [dm3] 3R_15021754_SNP [dm6]	T	G	5.742e^-5	0.703	INTERGENIC
3R	23035457	3R_23035457_SNP [dm3] 3R_27209735_SNP [dm6]	T	A	5.745e^-5	0.703	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	960921	2R_960921_SNP [dm3] 2R_5073416_SNP [dm6]	T	A	5.827e^-5	0.704	INTERGENIC
2L	11841218	2L_11841218_SNP [dm3] 2L_11841218_SNP [dm6]	C	T	5.904e^-5	0.704	UPSTREAM CR43936 DOWNSTREAM Sfp33A3 & 2 others INTRON Pde1c
X	18865629	X_18865629_SNP [dm3] X_18971596_SNP [dm6]	C	A	5.940e^-5	0.704	INTRON CG43759
X	8757977	X_8757977_SNP [dm3] X_8863944_SNP [dm6]	G	A	5.981e^-5	0.704	UPSTREAM CG12075 INTRON CG12075	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8757982	X_8757982_DEL [dm3] X_8863949_DEL [dm6]	AGTTCTACA	A	5.981e^-5	0.704	UPSTREAM CG12075 INTRON CG12075	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13908949	3L_13908949_SNP [dm3] 3L_13915849_SNP [dm6]	C	T	5.983e^-5	0.704	INTRON Rgl
3L	5178786	3L_5178786_SNP [dm3] 3L_5185686_SNP [dm6]	A	T	6.020e^-5	0.704	UPSTREAM shep INTRON shep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	10784645	X_10784645_SNP [dm3] X_10890612_SNP [dm6]	C	G	6.119e^-5	0.709	UTR_5_PRIME Ork1 UPSTREAM CR45616 INTRON Ork1
X	8862870	X_8862870_DEL [dm3] X_8968837_DEL [dm6]	TGA	T	6.154e^-5	0.709	INTRON rdgA
2L	11438123	2L_11438123_SNP [dm3] 2L_11438123_SNP [dm6]	T	A	6.187e^-5	0.709	SYNONYMOUS_CODING salm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12578942	X_12578942_SNP [dm3] X_12684909_SNP [dm6]	T	C	6.212e^-5	0.709	UTR_3_PRIME Smr
3R	27101696	3R_27101696_SNP [dm3] 3R_31275974_SNP [dm6]	A	C	6.356e^-5	0.709	INTERGENIC
X	12809591	X_12809591_DEL [dm3] X_12915558_DEL [dm6]	AACTATCCA	A	6.532e^-5	0.709	EXON CR45626
X	11847476	X_11847476_SNP [dm3] X_11953443_SNP [dm6]	A	T	6.611e^-5	0.709	INTRON cac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23521201	3R_23521201_SNP [dm3] 3R_27695479_SNP [dm6]	T	A	6.616e^-5	0.709	SYNONYMOUS_CODING CG43320 DOWNSTREAM CG43319 & 2 others	TF binding site mE1_TFBS_sens
3R	20795740	3R_20795740_SNP [dm3] 3R_24970018_SNP [dm6]	C	G	6.636e^-5	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9937944	3R_9937944_SNP [dm3] 3R_14112222_SNP [dm6]	T	A	6.673e^-5	0.709	UPSTREAM CG14357 DOWNSTREAM Kif19A INTERGENIC
2R	16482244	2R_16482244_SNP [dm3] 2R_20594739_SNP [dm6]	G	T	6.699e^-5	0.709	INTRON bl
3R	19041727	3R_19041727_SNP [dm3] 3R_23216005_SNP [dm6]	T	C	6.781e^-5	0.709	INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	8479883	X_8479883_SNP [dm3] X_8585850_SNP [dm6]	T	C	6.822e^-5	0.709	SYNONYMOUS_CODING CG12065
3L	4798034	3L_4798034_SNP [dm3] 3L_4798034_SNP [dm6]	A	G	6.831e^-5	0.709	INTERGENIC
3R	24997948	3R_24997948_SNP [dm3] 3R_29172226_SNP [dm6]	T	A	6.876e^-5	0.709	UTR_3_PRIME CG14509 DOWNSTREAM CG11898	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19600435	3R_19600435_SNP [dm3] 3R_23774713_SNP [dm6]	G	A	6.882e^-5	0.709	SYNONYMOUS_CODING Nup98-96 UPSTREAM CG10208	TF binding site mE1_TFBS_HSA
X	10784800	X_10784800_INS [dm3] X_10890767_INS [dm6]	A	AA	6.929e^-5	0.709	UTR_5_PRIME Ork1 UPSTREAM CR45616
3R	14554446	3R_14554446_SNP [dm3] 3R_18728724_SNP [dm6]	C	T	6.957e^-5	0.709	UPSTREAM CG7715 INTRON Cha	TF binding site mE1_TFBS_cad
3L	11213396	3L_11213396_SNP [dm3] 3L_11220296_SNP [dm6]	G	A	6.962e^-5	0.709	INTRON CG42671	TF binding site mE1_TFBS_cad
3R	25145529	3R_25145529_SNP [dm3] 3R_29319807_SNP [dm6]	T	A	6.999e^-5	0.709	UPSTREAM Cnx99A INTERGENIC
2L	11221089	2L_11221089_SNP [dm3] 2L_11221089_SNP [dm6]	C	T	7.061e^-5	0.709	INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5181124	3L_5181124_SNP [dm3] 3L_5188024_SNP [dm6]	C	T	7.100e^-5	0.709	INTRON shep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	24495726	3R_24495726_SNP [dm3] 3R_28670004_SNP [dm6]	C	T	7.119e^-5	0.709	SYNONYMOUS_CODING CG33346 UPSTREAM CG9989
2L	12203629	2L_12203629_SNP [dm3] 2L_12203629_SNP [dm6]	T	C	7.201e^-5	0.709	INTRON aret
3R	22638574	3R_22638574_SNP [dm3] 3R_26812852_SNP [dm6]	C	T	7.298e^-5	0.709	INTRON Tl
2R	15467481	2R_15467481_SNP [dm3] 2R_19579976_SNP [dm6]	C	T	7.363e^-5	0.709	INTRON sm
2R	15467532	2R_15467532_SNP [dm3] 2R_19580027_SNP [dm6]	G	T	7.363e^-5	0.709	INTRON sm
3L	1556383	3L_1556383_SNP [dm3] 3L_1556383_SNP [dm6]	G	T	7.363e^-5	0.709	SYNONYMOUS_CODING CG12099	TF binding site mE1_TFBS_cad
X	5393036	X_5393036_SNP [dm3] X_5499003_SNP [dm6]	G	A	7.363e^-5	0.709	INTERGENIC
X	5393300	X_5393300_SNP [dm3] X_5499267_SNP [dm6]	T	A	7.363e^-5	0.709	DOWNSTREAM CG32762 INTERGENIC
2L	12477223	2L_12477223_SNP [dm3] 2L_12477223_SNP [dm6]	A	T	7.377e^-5	0.709	INTRON bun
2L	18282599	2L_18282599_SNP [dm3] 2L_18282599_SNP [dm6]	T	G	7.521e^-5	0.709	INTERGENIC
3R	14552869	3R_14552869_SNP [dm3] 3R_18727147_SNP [dm6]	T	A	7.558e^-5	0.709	UPSTREAM CG7714 DOWNSTREAM CG7715 INTRON Cha
3R	19450616	3R_19450616_SNP [dm3] 3R_23624894_SNP [dm6]	C	T	7.586e^-5	0.709	INTRON CG31145
3R	19460710	3R_19460710_SNP [dm3] 3R_23634988_SNP [dm6]	A	G	7.624e^-5	0.709	INTRON CG31145
3R	15362171	3R_15362171_SNP [dm3] 3R_19536449_SNP [dm6]	C	T	7.665e^-5	0.709	INTRON Dys
2R	15467924	2R_15467924_SNP [dm3] 2R_19580419_SNP [dm6]	A	C	7.710e^-5	0.709	INTRON sm
3L	18698624	3L_18698624_SNP [dm3] 3L_18705524_SNP [dm6]	G	C	7.750e^-5	0.709	INTERGENIC
X	12991982	X_12991982_SNP [dm3] X_13097949_SNP [dm6]	A	C	7.774e^-5	0.709	SYNONYMOUS_CODING CG43313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16380996	2L_16380996_SNP [dm3] 2L_16380996_SNP [dm6]	T	A	7.789e^-5	0.709	INTERGENIC
2L	15787090	2L_15787090_SNP [dm3] 2L_15787090_SNP [dm6]	G	T	7.833e^-5	0.709	NON_SYNONYMOUS_CODING CG18109
3L	2421416	3L_2421416_SNP [dm3] 3L_2421416_SNP [dm6]	G	T	7.901e^-5	0.709	INTRON CG45186	TF binding site mE1_TFBS_inv
3R	24997936	3R_24997936_DEL [dm3] 3R_29172214_DEL [dm6]	TCG	T	7.926e^-5	0.709	UTR_3_PRIME CG14509 DOWNSTREAM CG11898	TF binding site mE1_TFBS_inv
3R	19489330	3R_19489330_SNP [dm3] 3R_23663608_SNP [dm6]	C	T	7.929e^-5	0.709	INTRON CG31145
X	18861388	X_18861388_SNP [dm3] X_18967355_SNP [dm6]	T	A	7.933e^-5	0.709	INTRON CG43759	TF binding site mE1_TFBS_HSA
3R	23081744	3R_23081744_SNP [dm3] 3R_27256022_SNP [dm6]	C	T	8.007e^-5	0.709	DOWNSTREAM woc INTRON TfIIA-L	TF binding site BDTNP1_TFBS_z
2L	7631268	2L_7631268_SNP [dm3] 2L_7631268_SNP [dm6]	T	A	8.016e^-5	0.709	INTERGENIC
3R	27101700	3R_27101700_SNP [dm3] 3R_31275978_SNP [dm6]	A	C	8.034e^-5	0.709	INTERGENIC
2L	12110723	2L_12110723_SNP [dm3] 2L_12110723_SNP [dm6]	A	G	8.045e^-5	0.709	UPSTREAM Phae2 DOWNSTREAM Phae1 INTERGENIC	TF binding site mE1_TFBS_Trl
X	7459884	X_7459884_SNP [dm3] X_7565851_SNP [dm6]	C	T	8.099e^-5	0.709	INTERGENIC
3R	24647337	3R_24647337_SNP [dm3] 3R_28821615_SNP [dm6]	T	C	8.140e^-5	0.709	SYNONYMOUS_CODING CG1647	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5118884	3L_5118884_SNP [dm3] 3L_5125784_SNP [dm6]	T	C	8.146e^-5	0.709	INTERGENIC
X	5301850	X_5301850_SNP [dm3] X_5407817_SNP [dm6]	G	A	8.183e^-5	0.709	SYNONYMOUS_CODING NAAT1	TF binding site BDTNP1_TFBS_twi
2R	7248131	2R_7248131_SNP [dm3] 2R_11360626_SNP [dm6]	A	G	8.184e^-5	0.709	UPSTREAM san & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	2228782	X_2228782_SNP [dm3] X_2334749_SNP [dm6]	G	T	8.184e^-5	0.709	UPSTREAM Ilp6 INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	12768751	X_12768751_DEL [dm3] X_12874718_DEL [dm6]	CACGCACACCATC...	C	8.250e^-5	0.709	INTRON Pde9
2R	15467559	2R_15467559_SNP [dm3] 2R_19580054_SNP [dm6]	A	C	8.251e^-5	0.709	INTRON sm
3R	21903858	3R_21903858_SNP [dm3] 3R_26078136_SNP [dm6]	A	G	8.335e^-5	0.709	SYNONYMOUS_CODING dys	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25306755	3R_25306755_SNP [dm3] 3R_29481033_SNP [dm6]	C	A	8.344e^-5	0.709	INTRON Ptp99A	TF binding site mE1_TFBS_cad
2L	5482147	2L_5482147_SNP [dm3] 2L_5482147_SNP [dm6]	T	C	8.346e^-5	0.709	INTERGENIC
X	20671744	X_20671744_DEL [dm3] X_20800717_DEL [dm6]	AA	A	8.443e^-5	0.712	INTRON shakB	TF binding site mE1_TFBS_HSA
2R	7695130	2R_7695130_SNP [dm3] 2R_11807625_SNP [dm6]	T	C	8.459e^-5	0.712	INTRON ths
3R	13821252	3R_13821252_SNP [dm3] 3R_17995530_SNP [dm6]	C	G	8.573e^-5	0.718	INTRON cpo
2L	15062107	2L_15062107_SNP [dm3] 2L_15062107_SNP [dm6]	C	A	8.616e^-5	0.719	DOWNSTREAM vig INTRON vas	TF binding site BDTNP1_TFBS_dl
X	12771674	X_12771674_SNP [dm3] X_12877641_SNP [dm6]	G	A	8.652e^-5	0.719	INTRON Pde9
X	19888612	X_19888612_SNP [dm3] X_19994579_SNP [dm6]	C	A	8.755e^-5	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	19888614	X_19888614_SNP [dm3] X_19994581_SNP [dm6]	C	A	8.755e^-5	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	340798	3R_340798_SNP [dm3] 3R_4515076_SNP [dm6]	A	G	8.816e^-5	0.72	SYNONYMOUS_CODING CG34357 INTRON CG34357
3R	24666941	3R_24666941_SNP [dm3] 3R_28841219_SNP [dm6]	A	G	8.846e^-5	0.72	INTRON Apc
X	7457564	X_7457564_SNP [dm3] X_7563531_SNP [dm6]	G	A	8.866e^-5	0.72	UPSTREAM CR44502 INTERGENIC
X	13690203	X_13690203_SNP [dm3] X_13796170_SNP [dm6]	A	T	8.903e^-5	0.72	DOWNSTREAM CG10996 INTRON inaE
2L	14751943	2L_14751943_SNP [dm3] 2L_14751943_SNP [dm6]	A	T	8.995e^-5	0.723	INTERGENIC
2L	16011101	2L_16011101_SNP [dm3] 2L_16011101_SNP [dm6]	G	A	9.102e^-5	0.723	INTRON beat-Ic
3R	10752250	3R_10752250_INS [dm3] 3R_14926528_INS [dm6]	C	CA	9.102e^-5	0.723	INTERGENIC
X	18865626	X_18865626_DEL [dm3] X_18971593_DEL [dm6]	AT	A	9.107e^-5	0.723	INTRON CG43759
3L	11417987	3L_11417987_SNP [dm3] 3L_11424887_SNP [dm6]	A	C	9.132e^-5	0.723	UPSTREAM CG7560 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	14552881	3R_14552881_SNP [dm3] 3R_18727159_SNP [dm6]	C	A	9.264e^-5	0.726	UPSTREAM CG7714 DOWNSTREAM CG7715 INTRON Cha
3R	14552882	3R_14552882_INS [dm3] 3R_18727160_INS [dm6]	G	GTAAGTAAT	9.264e^-5	0.726	UPSTREAM CG7714 DOWNSTREAM CG7715 INTRON Cha
X	13185940	X_13185940_SNP [dm3] X_13291907_SNP [dm6]	G	A	9.335e^-5	0.726	SYNONYMOUS_CODING CG15744	TF binding site mE1_TFBS_chinmo
3R	18342090	3R_18342090_SNP [dm3] 3R_22516368_SNP [dm6]	T	C	9.405e^-5	0.726	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
3L	5180839	3L_5180839_SNP [dm3] 3L_5187739_SNP [dm6]	A	T	9.424e^-5	0.726	INTRON shep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	7473319	X_7473319_SNP [dm3] X_7579286_SNP [dm6]	A	T	9.430e^-5	0.726	INTERGENIC	regulatory region REDfly_CRMs
2R	2832062	2R_2832062_SNP [dm3] 2R_6944557_SNP [dm6]	C	A	9.454e^-5	0.726	UPSTREAM CheB42b DOWNSTREAM CheB42c INTRON mim
3R	26347028	3R_26347028_SNP [dm3] 3R_30521306_SNP [dm6]	C	T	9.478e^-5	0.726	INTRON jdp	TF binding site mE1_TFBS_chinmo
2L	15061286	2L_15061286_DEL [dm3] 2L_15061286_DEL [dm6]	TT	T	9.533e^-5	0.726	UPSTREAM vas & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5880263	2L_5880263_SNP [dm3] 2L_5880263_SNP [dm6]	G	T	9.641e^-5	0.726	UPSTREAM rau INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22397105	3R_22397105_SNP [dm3] 3R_26571383_SNP [dm6]	A	T	9.695e^-5	0.726	INTRON scrib
2L	9950407	2L_9950407_SNP [dm3] 2L_9950407_SNP [dm6]	T	C	9.776e^-5	0.726	DOWNSTREAM mir-87 INTERGENIC
X	9240482	X_9240482_SNP [dm3] X_9346449_SNP [dm6]	A	T	9.916e^-5	0.726	INTRON CG34449
2R	20326457	2R_20326457_SNP [dm3] 2R_24438934_SNP [dm6]	G	A	9.916e^-5	0.726	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18109221	3L_18109221_SNP [dm3] 3L_18116121_SNP [dm6]	G	T	1.002e^-4	0.726	UTR_3_PRIME CG32195 DOWNSTREAM CG32195 INTRON CG7341
3R	17537964	3R_17537964_SNP [dm3] 3R_21712242_SNP [dm6]	C	A	1.002e^-4	0.726	INTRON CG31176
2R	15261959	2R_15261959_SNP [dm3] 2R_19374454_SNP [dm6]	A	T	1.012e^-4	0.726	UPSTREAM CG9416 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2L	12477218	2L_12477218_SNP [dm3] 2L_12477218_SNP [dm6]	A	C	1.023e^-4	0.726	INTRON bun
X	9763320	X_9763320_SNP [dm3] X_9869287_SNP [dm6]	C	T	1.023e^-4	0.726	UPSTREAM CG45060 INTERGENIC
2R	8693544	2R_8693544_DEL [dm3] 2R_12806039_DEL [dm6]	TAT	T	1.027e^-4	0.726	UPSTREAM CG17580 INTERGENIC
3R	24424258	3R_24424258_SNP [dm3] 3R_28598536_SNP [dm6]	G	A	1.032e^-4	0.726	SYNONYMOUS_CODING Noa36	TF binding site mE1_TFBS_sens
2R	9337154	2R_9337154_SNP [dm3] 2R_13449649_SNP [dm6]	T	G	1.035e^-4	0.726	UPSTREAM cnn & 1 other INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	17303685	3R_17303685_SNP [dm3] 3R_21477963_SNP [dm6]	T	G	1.041e^-4	0.726	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18343361	3R_18343361_SNP [dm3] 3R_22517639_SNP [dm6]	T	C	1.042e^-4	0.726	UTR_3_PRIME Octbeta1R DOWNSTREAM Octbeta1R
2L	3701863	2L_3701863_SNP [dm3] 2L_3701863_SNP [dm6]	T	A	1.044e^-4	0.726	NON_SYNONYMOUS_CODING CG43145 UPSTREAM CR44311 DOWNSTREAM Sfp24C1 & 1 other
3R	18343482	3R_18343482_SNP [dm3] 3R_22517760_SNP [dm6]	T	C	1.047e^-4	0.726	UTR_3_PRIME Octbeta1R DOWNSTREAM Octbeta1R
2R	976823	2R_976823_SNP [dm3] 2R_5089318_SNP [dm6]	A	T	1.050e^-4	0.726	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	850066	2R_850066_SNP [dm3] 2R_4962561_SNP [dm6]	G	A	1.052e^-4	0.726	INTRON Ir41a	transposable element FlyBase
2R	850095	2R_850095_SNP [dm3] 2R_4962590_SNP [dm6]	A	G	1.052e^-4	0.726	INTRON Ir41a	transposable element FlyBase
X	8375349	X_8375349_SNP [dm3] X_8481316_SNP [dm6]	A	T	1.055e^-4	0.726	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375351	X_8375351_SNP [dm3] X_8481318_SNP [dm6]	A	T	1.055e^-4	0.726	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375352	X_8375352_SNP [dm3] X_8481319_SNP [dm6]	A	T	1.055e^-4	0.726	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375354	X_8375354_SNP [dm3] X_8481321_SNP [dm6]	A	C	1.055e^-4	0.726	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375355	X_8375355_SNP [dm3] X_8481322_SNP [dm6]	C	T	1.055e^-4	0.726	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375360	X_8375360_DEL [dm3] X_8481327_DEL [dm6]	CAATA	C	1.055e^-4	0.726	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
3R	8067671	3R_8067671_SNP [dm3] 3R_12241949_SNP [dm6]	A	G	1.059e^-4	0.726	INTERGENIC
3R	19805630	3R_19805630_SNP [dm3] 3R_23979908_SNP [dm6]	T	C	1.061e^-4	0.726	INTRON CG31140
2L	16011356	2L_16011356_INS [dm3] 2L_16011356_INS [dm6]	T	TCA	1.071e^-4	0.729	INTRON beat-Ic
2R	10740556	2R_10740556_SNP [dm3] 2R_14853051_SNP [dm6]	C	T	1.074e^-4	0.729	SYNONYMOUS_CODING Ercc1 UPSTREAM SMC2 DOWNSTREAM Ciao1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	18276059	2L_18276059_SNP [dm3] 2L_18276059_SNP [dm6]	T	A	1.085e^-4	0.734	UPSTREAM CG42750 INTERGENIC	TF binding site mE1_TFBS_cad
3L	8700329	3L_8700329_SNP [dm3] 3L_8707229_SNP [dm6]	C	T	1.088e^-4	0.734	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18341886	3R_18341886_SNP [dm3] 3R_22516164_SNP [dm6]	T	C	1.100e^-4	0.739	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
3L	10422794	3L_10422794_SNP [dm3] 3L_10429694_SNP [dm6]	A	C	1.108e^-4	0.739	UTR_3_PRIME Ir67b
3L	10422630	3L_10422630_SNP [dm3] 3L_10429530_SNP [dm6]	T	A	1.112e^-4	0.739	DOWNSTREAM Ir67b INTERGENIC
X	18864714	X_18864714_SNP [dm3] X_18970681_SNP [dm6]	C	A	1.116e^-4	0.739	INTRON CG43759
X	18611566	X_18611566_SNP [dm3] X_18717533_SNP [dm6]	G	T	1.117e^-4	0.739	INTRON CCKLR-17D1
2L	2835628	2L_2835628_INS [dm3] 2L_2835628_INS [dm6]	A	AA	1.120e^-4	0.739	DOWNSTREAM CG3119 INTRON CG3119
3L	7328597	3L_7328597_DEL [dm3] 3L_7335497_DEL [dm6]	CGTG	A	1.135e^-4	0.746	UTR_3_PRIME eco UPSTREAM CG43780 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	24036963	3R_24036963_SNP [dm3] 3R_28211241_SNP [dm6]	G	T	1.146e^-4	0.746	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13121943	2R_13121943_SNP [dm3] 2R_17234438_SNP [dm6]	C	T	1.147e^-4	0.746	INTRON mbl
2L	12477228	2L_12477228_INS [dm3] 2L_12477228_INS [dm6]	T	TT	1.153e^-4	0.746	INTRON bun
3R	18343401	3R_18343401_SNP [dm3] 3R_22517679_SNP [dm6]	T	C	1.156e^-4	0.746	UTR_3_PRIME Octbeta1R DOWNSTREAM Octbeta1R
3R	18342210	3R_18342210_SNP [dm3] 3R_22516488_SNP [dm6]	C	T	1.157e^-4	0.746	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
2L	9883912	2L_9883912_SNP [dm3] 2L_9883912_SNP [dm6]	C	G	1.158e^-4	0.746	INTRON nAChRalpha6
3R	24823582	3R_24823582_SNP [dm3] 3R_28997860_SNP [dm6]	A	T	1.172e^-4	0.746	INTRON wat
3R	23854082	3R_23854082_SNP [dm3] 3R_28028360_SNP [dm6]	A	G	1.173e^-4	0.746	INTRON CG34362
X	12402257	X_12402257_SNP [dm3] X_12508224_SNP [dm6]	A	G	1.173e^-4	0.746	INTRON CG2556	TF binding site BDTNP1_TFBS_da
X	8758198	X_8758198_SNP [dm3] X_8864165_SNP [dm6]	T	C	1.176e^-4	0.746	UTR_5_PRIME CG12075 INTRON CG12075	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	7063945	X_7063945_SNP [dm3] X_7169912_SNP [dm6]	T	G	1.180e^-4	0.746	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	7209093	2L_7209093_SNP [dm3] 2L_7209093_SNP [dm6]	T	A	1.196e^-4	0.746	INTRON CG13784
X	9763307	X_9763307_SNP [dm3] X_9869274_SNP [dm6]	A	G	1.198e^-4	0.746	UPSTREAM CG45060 INTERGENIC
2L	12477202	2L_12477202_DEL [dm3] 2L_12477202_DEL [dm6]	TAGATAAGAATGTAT...	T	1.203e^-4	0.746	INTRON bun
2L	18753158	2L_18753158_SNP [dm3] 2L_18753158_SNP [dm6]	C	T	1.209e^-4	0.746	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10975262	3R_10975262_SNP [dm3] 3R_15149540_SNP [dm6]	G	A	1.213e^-4	0.746	UPSTREAM Gyc88E INTERGENIC
X	19888757	X_19888757_SNP [dm3] X_19994724_SNP [dm6]	T	A	1.218e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	19888768	X_19888768_SNP [dm3] X_19994735_SNP [dm6]	T	A	1.218e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	19888809	X_19888809_SNP [dm3] X_19994776_SNP [dm6]	C	T	1.218e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7437119	2R_7437119_SNP [dm3] 2R_11549614_SNP [dm6]	C	T	1.223e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad
3L	1395498	3L_1395498_SNP [dm3] 3L_1395498_SNP [dm6]	T	C	1.229e^-4	0.746	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19322625	2R_19322625_SNP [dm3] 2R_23435102_SNP [dm6]	A	T	1.233e^-4	0.746	INTERGENIC
3L	14585737	3L_14585737_SNP [dm3] 3L_14592637_SNP [dm6]	A	G	1.237e^-4	0.746	INTRON HGTX	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	8758257	X_8758257_SNP [dm3] X_8864224_SNP [dm6]	T	C	1.239e^-4	0.746	UTR_5_PRIME CG12075 INTRON CG12075	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16870498	2L_16870498_SNP [dm3] 2L_16870498_SNP [dm6]	T	C	1.247e^-4	0.746	EXON CR31781	TF binding site mE1_TFBS_cad
2L	9883909	2L_9883909_SNP [dm3] 2L_9883909_SNP [dm6]	A	G	1.251e^-4	0.746	INTRON nAChRalpha6
3L	22401278	3L_22401278_SNP [dm3] 3L_22408178_SNP [dm6]	A	C	1.261e^-4	0.746	UPSTREAM Ten-m INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3L	22401289	3L_22401289_SNP [dm3] 3L_22408189_SNP [dm6]	C	G	1.261e^-4	0.746	UPSTREAM Ten-m INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2L	11940014	2L_11940014_SNP [dm3] 2L_11940014_SNP [dm6]	C	T	1.269e^-4	0.746	DOWNSTREAM Or33c INTERGENIC
2R	12399017	2R_12399017_SNP [dm3] 2R_16511512_SNP [dm6]	G	A	1.286e^-4	0.746	INTRON Sema-2a
3R	14553616	3R_14553616_SNP [dm3] 3R_18727894_SNP [dm6]	C	T	1.287e^-4	0.746	NON_SYNONYMOUS_CODING CG7715 INTRON Cha	TF binding site mE1_TFBS_chinmo
2L	14578981	2L_14578981_SNP [dm3] 2L_14578981_SNP [dm6]	A	G	1.289e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19355835	3R_19355835_SNP [dm3] 3R_23530113_SNP [dm6]	G	C	1.293e^-4	0.746	INTRON CG10175
2L	12111063	2L_12111063_SNP [dm3] 2L_12111063_SNP [dm6]	T	G	1.300e^-4	0.746	UPSTREAM Phae2 DOWNSTREAM Phae1 INTERGENIC	TF binding site mE1_TFBS_cad
3R	27024679	3R_27024679_SNP [dm3] 3R_31198957_SNP [dm6]	C	A	1.301e^-4	0.746	INTRON CG1544	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	17158025	2L_17158025_SNP [dm3] 2L_17158025_SNP [dm6]	G	A	1.304e^-4	0.746	INTRON beat-IIIa & 1 other
3L	11276793	3L_11276793_SNP [dm3] 3L_11283693_SNP [dm6]	A	T	1.307e^-4	0.746	INTERGENIC
3L	11276796	3L_11276796_SNP [dm3] 3L_11283696_SNP [dm6]	G	C	1.307e^-4	0.746	INTERGENIC
2R	9411246	2R_9411246_SNP [dm3] 2R_13523741_SNP [dm6]	C	A	1.311e^-4	0.746	DOWNSTREAM CG13331 INTRON Vmat
X	13690044	X_13690044_SNP [dm3] X_13796011_SNP [dm6]	C	G	1.311e^-4	0.746	DOWNSTREAM CG10996 INTRON inaE
2L	8551975	2L_8551975_SNP [dm3] 2L_8551975_SNP [dm6]	A	G	1.312e^-4	0.746	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi
3R	18697365	3R_18697365_SNP [dm3] 3R_22871643_SNP [dm6]	T	A	1.325e^-4	0.746	INTERGENIC
3R	23633048	3R_23633048_SNP [dm3] 3R_27807326_SNP [dm6]	G	A	1.325e^-4	0.746	INTRON CG34353
2R	9369010	2R_9369010_SNP [dm3] 2R_13481505_SNP [dm6]	C	G	1.330e^-4	0.746	INTRON arr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5880328	2L_5880328_SNP [dm3] 2L_5880328_SNP [dm6]	G	A	1.334e^-4	0.746	UPSTREAM rau INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	18343165	3R_18343165_SNP [dm3] 3R_22517443_SNP [dm6]	C	T	1.339e^-4	0.746	UTR_3_PRIME Octbeta1R DOWNSTREAM Octbeta1R
3R	23535991	3R_23535991_SNP [dm3] 3R_27710269_SNP [dm6]	G	T	1.346e^-4	0.746	SPLICE_SITE_REGION CG12877 INTRON CG12877
3L	2419928	3L_2419928_SNP [dm3] 3L_2419928_SNP [dm6]	C	G	1.352e^-4	0.746	INTRON CG45186
2R	1039302	2R_1039302_SNP [dm3] 2R_5151797_SNP [dm6]	T	C	1.359e^-4	0.746	INTRON Atf6	transposable element FlyBase
X	9763373	X_9763373_SNP [dm3] X_9869340_SNP [dm6]	G	A	1.359e^-4	0.746	UPSTREAM CG45060 INTERGENIC
X	9763949	X_9763949_SNP [dm3] X_9869916_SNP [dm6]	G	A	1.359e^-4	0.746	INTERGENIC
X	9765017	X_9765017_SNP [dm3] X_9870984_SNP [dm6]	G	A	1.359e^-4	0.746	DOWNSTREAM CG45061 INTERGENIC
X	9765242	X_9765242_SNP [dm3] X_9871209_SNP [dm6]	A	C	1.359e^-4	0.746	UTR_3_PRIME CG45061
3L	14523267	3L_14523267_SNP [dm3] 3L_14530167_SNP [dm6]	A	T	1.360e^-4	0.746	INTRON bbg
2R	16776186	2R_16776186_SNP [dm3] 2R_20888681_SNP [dm6]	G	C	1.364e^-4	0.746	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15849765	2L_15849765_SNP [dm3] 2L_15849765_SNP [dm6]	C	T	1.367e^-4	0.746	INTERGENIC
2L	17084384	2L_17084384_SNP [dm3] 2L_17084384_SNP [dm6]	G	A	1.371e^-4	0.746	INTERGENIC
3L	12721254	3L_12721254_SNP [dm3] 3L_12728154_SNP [dm6]	G	T	1.374e^-4	0.746	INTERGENIC
3L	2275514	3L_2275514_SNP [dm3] 3L_2275514_SNP [dm6]	T	A	1.384e^-4	0.746	INTERGENIC
3L	4814064	3L_4814064_SNP [dm3] 3L_4814064_SNP [dm6]	C	T	1.384e^-4	0.746	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9763247	X_9763247_SNP [dm3] X_9869214_SNP [dm6]	T	A	1.384e^-4	0.746	UPSTREAM CG45060 INTERGENIC
X	9763250	X_9763250_SNP [dm3] X_9869217_SNP [dm6]	A	C	1.384e^-4	0.746	UPSTREAM CG45060 INTERGENIC
3R	24035640	3R_24035640_SNP [dm3] 3R_28209918_SNP [dm6]	A	T	1.397e^-4	0.746	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10667071	3R_10667071_SNP [dm3] 3R_14841349_SNP [dm6]	T	A	1.398e^-4	0.746	INTRON btsz
3R	27025652	3R_27025652_SNP [dm3] 3R_31199930_SNP [dm6]	C	T	1.402e^-4	0.746	SYNONYMOUS_CODING CG1544	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10292592	2L_10292592_DEL [dm3] 2L_10292592_DEL [dm6]	ACTTATACTTTTTA...	A	1.412e^-4	0.746	UPSTREAM CG5604 DOWNSTREAM Hand INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
3L	10447420	3L_10447420_SNP [dm3] 3L_10454320_SNP [dm6]	C	G	1.420e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19491538	2R_19491538_SNP [dm3] 2R_23604015_SNP [dm6]	A	G	1.425e^-4	0.746	SYNONYMOUS_CODING CG17664 DOWNSTREAM CG5398
2L	12477200	2L_12477200_SNP [dm3] 2L_12477200_SNP [dm6]	T	A	1.426e^-4	0.746	INTRON bun
2L	1232654	2L_1232654_SNP [dm3] 2L_1232654_SNP [dm6]	T	A	1.433e^-4	0.746	INTERGENIC
X	8287216	X_8287216_SNP [dm3] X_8393183_SNP [dm6]	T	A	1.439e^-4	0.746	INTERGENIC
3L	12948079	3L_12948079_DEL [dm3] 3L_12954979_DEL [dm6]	CATATTAAA	C	1.440e^-4	0.746	UPSTREAM CG10752 INTERGENIC
X	19140855	X_19140855_SNP [dm3] X_19246822_SNP [dm6]	G	A	1.449e^-4	0.746	SYNONYMOUS_CODING CG7992	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	23417197	3R_23417197_SNP [dm3] 3R_27591475_SNP [dm6]	T	C	1.458e^-4	0.746	INTRON CG5639
3L	5275294	3L_5275294_SNP [dm3] 3L_5282194_SNP [dm6]	G	C	1.465e^-4	0.746	INTERGENIC
X	8375342	X_8375342_SNP [dm3] X_8481309_SNP [dm6]	A	T	1.466e^-4	0.746	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375345	X_8375345_SNP [dm3] X_8481312_SNP [dm6]	C	T	1.466e^-4	0.746	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
3R	19450646	3R_19450646_SNP [dm3] 3R_23624924_SNP [dm6]	G	A	1.481e^-4	0.746	INTRON CG31145
3R	23853888	3R_23853888_SNP [dm3] 3R_28028166_SNP [dm6]	C	A	1.484e^-4	0.746	INTRON CG34362
3R	26044394	3R_26044394_SNP [dm3] 3R_30218672_SNP [dm6]	A	C	1.487e^-4	0.746	INTERGENIC
3R	14829404	3R_14829404_SNP [dm3] 3R_19003682_SNP [dm6]	A	T	1.487e^-4	0.746	INTRON gukh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10422635	3L_10422635_SNP [dm3] 3L_10429535_SNP [dm6]	G	A	1.488e^-4	0.746	DOWNSTREAM Ir67b INTERGENIC
3L	8617057	3L_8617057_SNP [dm3] 3L_8623957_SNP [dm6]	A	T	1.493e^-4	0.746	UPSTREAM Zasp66 & 1 other INTERGENIC
2R	19209885	2R_19209885_SNP [dm3] 2R_23322362_SNP [dm6]	A	G	1.509e^-4	0.746	SYNONYMOUS_CODING CG30416
X	19268211	X_19268211_INS [dm3] X_19374178_INS [dm6]	A	ATCCCGAA	1.512e^-4	0.746	INTRON kek5
2L	4581720	2L_4581720_SNP [dm3] 2L_4581720_SNP [dm6]	G	C	1.514e^-4	0.746	DOWNSTREAM CR43716 INTRON dp
2L	11579345	2L_11579345_SNP [dm3] 2L_11579345_SNP [dm6]	T	G	1.524e^-4	0.746	INTERGENIC
2L	1926923	2L_1926923_SNP [dm3] 2L_1926923_SNP [dm6]	G	T	1.526e^-4	0.746	UPSTREAM CG7337 INTRON CG7337
2R	845903	2R_845903_SNP [dm3] 2R_4958398_SNP [dm6]	T	A	1.532e^-4	0.746	INTRON Ir41a	transposable element FlyBase
3L	22401323	3L_22401323_SNP [dm3] 3L_22408223_SNP [dm6]	A	C	1.533e^-4	0.746	UPSTREAM Ten-m INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3L	16202400	3L_16202400_SNP [dm3] 3L_16209300_SNP [dm6]	A	T	1.534e^-4	0.746	INTERGENIC
3L	16656753	3L_16656753_SNP [dm3] 3L_16663653_SNP [dm6]	A	G	1.547e^-4	0.746	SYNONYMOUS_CODING Galphaf	TF binding site mE1_TFBS_cad
2L	11144855	2L_11144855_SNP [dm3] 2L_11144855_SNP [dm6]	A	C	1.548e^-4	0.746	SYNONYMOUS_CODING CG31867 INTRON Gyc32E
3R	23987957	3R_23987957_SNP [dm3] 3R_28162235_SNP [dm6]	T	A	1.550e^-4	0.746	INTRON CG34354
3R	23988161	3R_23988161_SNP [dm3] 3R_28162439_SNP [dm6]	C	T	1.550e^-4	0.746	INTRON CG34354
2L	10555481	2L_10555481_SNP [dm3] 2L_10555481_SNP [dm6]	C	T	1.550e^-4	0.746	INTRON Trim9	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17719520	3R_17719520_SNP [dm3] 3R_21893798_SNP [dm6]	C	G	1.552e^-4	0.746	INTRON CG6678	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11173980	X_11173980_SNP [dm3] X_11279947_SNP [dm6]	C	A	1.552e^-4	0.746	INTRON CG44422
3L	3197718	3L_3197718_SNP [dm3] 3L_3197718_SNP [dm6]	T	C	1.555e^-4	0.746	UPSTREAM CG14966 DOWNSTREAM CG32276 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3197752	3L_3197752_SNP [dm3] 3L_3197752_SNP [dm6]	C	T	1.555e^-4	0.746	UPSTREAM CG14966 DOWNSTREAM CG32276 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3197821	3L_3197821_SNP [dm3] 3L_3197821_SNP [dm6]	A	T	1.555e^-4	0.746	UPSTREAM CG14966 DOWNSTREAM CG32276 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24750361	3R_24750361_SNP [dm3] 3R_28924639_SNP [dm6]	C	T	1.556e^-4	0.746	DOWNSTREAM CG14521 INTRON CG11828
X	9909447	X_9909447_SNP [dm3] X_10015414_SNP [dm6]	G	T	1.563e^-4	0.746	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	19805713	3R_19805713_SNP [dm3] 3R_23979991_SNP [dm6]	A	C	1.563e^-4	0.746	INTRON CG31140
2R	18871682	2R_18871682_SNP [dm3] 2R_22984159_SNP [dm6]	C	T	1.564e^-4	0.746	SYNONYMOUS_CODING CG32834 DOWNSTREAM CG32833	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16275881	3L_16275881_SNP [dm3] 3L_16282781_SNP [dm6]	T	G	1.566e^-4	0.746	UPSTREAM CG13049 DOWNSTREAM CG13048 INTERGENIC
3R	26899984	3R_26899984_SNP [dm3] 3R_31074262_SNP [dm6]	T	G	1.567e^-4	0.746	INTRON Sox100B
2L	1231190	2L_1231190_DEL [dm3] 2L_1231190_DEL [dm6]	GT	G	1.569e^-4	0.746	INTERGENIC
2L	4495235	2L_4495235_SNP [dm3] 2L_4495235_SNP [dm6]	A	G	1.585e^-4	0.749	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12592593	X_12592593_SNP [dm3] X_12698560_SNP [dm6]	T	G	1.591e^-4	0.749	INTRON Smr	TF binding site BDTNP1_TFBS_dl
X	9763241	X_9763241_SNP [dm3] X_9869208_SNP [dm6]	T	A	1.596e^-4	0.749	UPSTREAM CG45060 INTERGENIC
2L	3629670	2L_3629670_SNP [dm3] 2L_3629670_SNP [dm6]	G	T	1.598e^-4	0.749	INTRON for	TF binding site BDTNP1_TFBS_twi
2L	4495845	2L_4495845_SNP [dm3] 2L_4495845_SNP [dm6]	A	G	1.601e^-4	0.749	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17363710	3R_17363710_SNP [dm3] 3R_21537988_SNP [dm6]	A	G	1.604e^-4	0.749	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	10943755	2L_10943755_SNP [dm3] 2L_10943755_SNP [dm6]	T	C	1.605e^-4	0.749	UPSTREAM CR44492 & 1 other INTRON dpr2
3L	14829913	3L_14829913_SNP [dm3] 3L_14836813_SNP [dm6]	G	A	1.606e^-4	0.749	INTRON CG17839
2R	8945300	2R_8945300_SNP [dm3] 2R_13057795_SNP [dm6]	A	T	1.619e^-4	0.753	UTR_3_PRIME Drl-2
3L	10447422	3L_10447422_SNP [dm3] 3L_10454322_SNP [dm6]	C	T	1.654e^-4	0.764	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1760009	3L_1760009_SNP [dm3] 3L_1760009_SNP [dm6]	T	C	1.655e^-4	0.764	SYNONYMOUS_CODING Dhc62B DOWNSTREAM CG8001	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14309178	3R_14309178_SNP [dm3] 3R_18483456_SNP [dm6]	C	T	1.655e^-4	0.764	INTRON fru
2R	10011745	2R_10011745_SNP [dm3] 2R_14124240_SNP [dm6]	A	C	1.661e^-4	0.764	INTRON Prosap
3L	10422693	3L_10422693_SNP [dm3] 3L_10429593_SNP [dm6]	C	T	1.669e^-4	0.764	DOWNSTREAM Ir67b INTERGENIC
2L	19014865	2L_19014865_INS [dm3] 2L_19014865_INS [dm6]	T	TGTAT	1.676e^-4	0.764	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13983851	2L_13983851_SNP [dm3] 2L_13983851_SNP [dm6]	G	A	1.676e^-4	0.764	SYNONYMOUS_CODING rk DOWNSTREAM NimC2	TF binding site mE1_TFBS_chinmo
3R	13078181	3R_13078181_SNP [dm3] 3R_17252459_SNP [dm6]	A	G	1.680e^-4	0.764	INTRON beat-IIb
X	7457761	X_7457761_SNP [dm3] X_7563728_SNP [dm6]	A	T	1.686e^-4	0.764	UPSTREAM CR44502 INTERGENIC
3R	8701081	3R_8701081_SNP [dm3] 3R_12875359_SNP [dm6]	T	C	1.687e^-4	0.764	INTERGENIC
3R	27025359	3R_27025359_SNP [dm3] 3R_31199637_SNP [dm6]	A	T	1.693e^-4	0.764	SPLICE_SITE_REGION CG1544 INTRON CG1544	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20795693	3R_20795693_MNP [dm3] 3R_24969971_MNP [dm6]	CAT	TTG	1.700e^-4	0.764	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	991520	2R_991520_DEL [dm3] 2R_5104015_DEL [dm6]	CGGTAAAGGAGTACTACTAC...	C	1.703e^-4	0.764	INTERGENIC	transposable element FlyBase
2L	6152109	2L_6152109_SNP [dm3] 2L_6152109_SNP [dm6]	A	T	1.706e^-4	0.764	INTRON Muc26B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	6153156	2L_6153156_SNP [dm3] 2L_6153156_SNP [dm6]	G	A	1.706e^-4	0.764	NON_SYNONYMOUS_CODING Muc26B DOWNSTREAM CG31639	TF binding site BDTNP1_TFBS_sna
3R	23417212	3R_23417212_SNP [dm3] 3R_27591490_SNP [dm6]	T	A	1.709e^-4	0.764	INTRON CG5639
3R	20485363	3R_20485363_SNP [dm3] 3R_24659641_SNP [dm6]	G	T	1.721e^-4	0.768	UTR_5_PRIME CG31126 DOWNSTREAM mir-1003 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10002034	2R_10002034_SNP [dm3] 2R_14114529_SNP [dm6]	C	A	1.725e^-4	0.768	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	9383346	3R_9383346_SNP [dm3] 3R_13557624_SNP [dm6]	A	G	1.739e^-4	0.769	INTERGENIC
3R	19003064	3R_19003064_SNP [dm3] 3R_23177342_SNP [dm6]	C	T	1.741e^-4	0.769	INTRON Irk1
X	4410333	X_4410333_SNP [dm3] X_4516300_SNP [dm6]	G	C	1.741e^-4	0.769	INTRON CR32773
X	9763281	X_9763281_SNP [dm3] X_9869248_SNP [dm6]	G	A	1.745e^-4	0.769	UPSTREAM CG45060 INTERGENIC
2L	16792823	2L_16792823_SNP [dm3] 2L_16792823_SNP [dm6]	C	G	1.752e^-4	0.77	NON_SYNONYMOUS_CODING CG17928
2R	17760433	2R_17760433_SNP [dm3] 2R_21872928_SNP [dm6]	A	T	1.761e^-4	0.773	INTRON Fili	TF binding site mE1_TFBS_D
3L	1415734	3L_1415734_SNP [dm3] 3L_1415734_SNP [dm6]	G	C	1.769e^-4	0.773	UPSTREAM FucTD INTRON Ptp61F
2L	4495827	2L_4495827_SNP [dm3] 2L_4495827_SNP [dm6]	C	T	1.775e^-4	0.773	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13689978	X_13689978_SNP [dm3] X_13795945_SNP [dm6]	G	T	1.778e^-4	0.773	DOWNSTREAM CG10996 INTRON inaE
3R	18343376	3R_18343376_SNP [dm3] 3R_22517654_SNP [dm6]	C	A	1.780e^-4	0.773	UTR_3_PRIME Octbeta1R DOWNSTREAM Octbeta1R
3R	17303679	3R_17303679_DEL [dm3] 3R_21477957_DEL [dm6]	ATGA	A	1.782e^-4	0.773	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13238977	2L_13238977_SNP [dm3] 2L_13238977_SNP [dm6]	G	T	1.787e^-4	0.773	INTRON CG5867
3R	18263846	3R_18263846_SNP [dm3] 3R_22438124_SNP [dm6]	A	G	1.794e^-4	0.773	INTERGENIC
2R	13534460	2R_13534460_SNP [dm3] 2R_17646955_SNP [dm6]	C	A	1.798e^-4	0.773	UTR_3_PRIME CCHa1-R
3R	25211897	3R_25211897_INS [dm3] 3R_29386175_INS [dm6]	T	TT	1.799e^-4	0.773	INTRON Ptp99A	TF binding site mE1_TFBS_inv
3R	24568400	3R_24568400_SNP [dm3] 3R_28742678_SNP [dm6]	C	T	1.803e^-4	0.773	INTRON AstA-R2
2L	11665123	2L_11665123_SNP [dm3] 2L_11665123_SNP [dm6]	A	G	1.810e^-4	0.773	UPSTREAM CR44481 INTERGENIC
2L	2707276	2L_2707276_SNP [dm3] 2L_2707276_SNP [dm6]	A	T	1.811e^-4	0.773	INTRON CG31690
2L	18870794	2L_18870794_SNP [dm3] 2L_18870794_SNP [dm6]	T	A	1.817e^-4	0.773	INTRON tup	TF binding site BDTNP1_TFBS_dl
3L	7745731	3L_7745731_SNP [dm3] 3L_7752631_SNP [dm6]	T	C	1.822e^-4	0.774	INTRON CG32373
3R	25145419	3R_25145419_SNP [dm3] 3R_29319697_SNP [dm6]	A	T	1.834e^-4	0.777	UPSTREAM Cnx99A INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl
2L	1231116	2L_1231116_SNP [dm3] 2L_1231116_SNP [dm6]	A	G	1.846e^-4	0.779	INTERGENIC
2L	3701833	2L_3701833_SNP [dm3] 2L_3701833_SNP [dm6]	T	G	1.855e^-4	0.779	UTR_5_PRIME CG43145 UPSTREAM CR44311 DOWNSTREAM Sfp24C1 & 1 other
2L	13237887	2L_13237887_INS [dm3] 2L_13237887_INS [dm6]	T	TT	1.863e^-4	0.779	INTRON CG5867
2R	7021008	2R_7021008_SNP [dm3] 2R_11133503_SNP [dm6]	C	T	1.864e^-4	0.779	INTERGENIC
X	8375339	X_8375339_SNP [dm3] X_8481306_SNP [dm6]	A	C	1.868e^-4	0.779	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
2L	16566750	2L_16566750_SNP [dm3] 2L_16566750_SNP [dm6]	C	A	1.875e^-4	0.779	INTRON CG42389
X	9764829	X_9764829_SNP [dm3] X_9870796_SNP [dm6]	C	T	1.878e^-4	0.779	DOWNSTREAM CG45061 INTERGENIC
X	3713272	X_3713272_SNP [dm3] X_3819239_SNP [dm6]	G	C	1.878e^-4	0.779	UPSTREAM tRNA:CR32785 INTRON ec
3R	18811940	3R_18811940_SNP [dm3] 3R_22986218_SNP [dm6]	A	G	1.881e^-4	0.779	SPLICE_SITE_REGION Nha2 SYNONYMOUS_CODING Nha2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13690272	X_13690272_SNP [dm3] X_13796239_SNP [dm6]	G	A	1.884e^-4	0.779	DOWNSTREAM CG10996 INTRON inaE
X	13690289	X_13690289_DEL [dm3] X_13796256_DEL [dm6]	AA	A	1.884e^-4	0.779	DOWNSTREAM CG10996 INTRON inaE
3R	23035440	3R_23035440_SNP [dm3] 3R_27209718_SNP [dm6]	T	A	1.888e^-4	0.779	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	23416042	3R_23416042_SNP [dm3] 3R_27590320_SNP [dm6]	A	G	1.899e^-4	0.782	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9932897	2R_9932897_SNP [dm3] 2R_14045392_SNP [dm6]	A	G	1.912e^-4	0.783	INTRON mam	TF binding site mE1_TFBS_sens
X	10308606	X_10308606_SNP [dm3] X_10414573_SNP [dm6]	G	T	1.914e^-4	0.783	INTRON CG32683
2L	7020876	2L_7020876_SNP [dm3] 2L_7020876_SNP [dm6]	A	T	1.915e^-4	0.783	UPSTREAM Pcp INTRON ade3
X	6645438	X_6645438_SNP [dm3] X_6751405_SNP [dm6]	G	T	1.918e^-4	0.783	INTRON CG14439
3R	21189773	3R_21189773_SNP [dm3] 3R_25364051_SNP [dm6]	A	C	1.937e^-4	0.789	INTRON Fur1
3L	3293568	3L_3293568_SNP [dm3] 3L_3293568_SNP [dm6]	T	C	1.942e^-4	0.789	INTRON CG12009
2L	16711940	2L_16711940_SNP [dm3] 2L_16711940_SNP [dm6]	A	T	1.952e^-4	0.79	INTRON CG31808
X	16338819	X_16338819_SNP [dm3] X_16444786_SNP [dm6]	C	A	1.954e^-4	0.79	UTR_3_PRIME rngo DOWNSTREAM eIF-2alpha	TF binding site mE1_TFBS_cad
2L	2706094	2L_2706094_SNP [dm3] 2L_2706094_SNP [dm6]	G	A	1.984e^-4	0.799	INTRON CG31690
3R	25306591	3R_25306591_SNP [dm3] 3R_29480869_SNP [dm6]	G	T	1.992e^-4	0.799	INTRON Ptp99A	TF binding site mE1_TFBS_cad
2R	1042008	2R_1042008_SNP [dm3] 2R_5154503_SNP [dm6]	G	T	1.998e^-4	0.799	UTR_3_PRIME Atf6 DOWNSTREAM Atf6	transposable element FlyBase
3R	25433307	3R_25433307_SNP [dm3] 3R_29607585_SNP [dm6]	T	A	2.001e^-4	0.799	UPSTREAM Diedel2 INTRON alph
X	8375357	X_8375357_SNP [dm3] X_8481324_SNP [dm6]	A	T	2.004e^-4	0.799	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
3R	8361430	3R_8361430_SNP [dm3] 3R_12535708_SNP [dm6]	T	G	2.013e^-4	0.799	INTRON Octbeta3R
3R	19709362	3R_19709362_SNP [dm3] 3R_23883640_SNP [dm6]	G	A	2.014e^-4	0.799	INTRON Pli
X	9763917	X_9763917_SNP [dm3] X_9869884_SNP [dm6]	T	A	2.021e^-4	0.799	INTERGENIC
X	8375346	X_8375346_SNP [dm3] X_8481313_SNP [dm6]	A	G	2.026e^-4	0.799	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375359	X_8375359_SNP [dm3] X_8481326_SNP [dm6]	A	T	2.026e^-4	0.799	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
3L	18658490	3L_18658490_SNP [dm3] 3L_18665390_SNP [dm6]	A	G	2.027e^-4	0.799	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11886128	2R_11886128_INS [dm3] 2R_15998623_INS [dm6]	T	TT	2.028e^-4	0.799	INTRON ATPCL
2L	10956848	2L_10956848_SNP [dm3] 2L_10956848_SNP [dm6]	T	A	2.049e^-4	0.804	INTRON dpr2
2L	10956853	2L_10956853_SNP [dm3] 2L_10956853_SNP [dm6]	C	A	2.049e^-4	0.804	INTRON dpr2
2L	6757771	2L_6757771_SNP [dm3] 2L_6757771_SNP [dm6]	C	T	2.059e^-4	0.804	DOWNSTREAM CG11322 INTERGENIC
2L	6757827	2L_6757827_SNP [dm3] 2L_6757827_SNP [dm6]	C	T	2.059e^-4	0.804	DOWNSTREAM CG11322 INTERGENIC
3R	25231056	3R_25231056_SNP [dm3] 3R_29405334_SNP [dm6]	G	C	2.061e^-4	0.804	INTRON Ptp99A
3R	24017508	3R_24017508_SNP [dm3] 3R_28191786_SNP [dm6]	A	G	2.070e^-4	0.804	INTRON CG34354
X	5642684	X_5642684_SNP [dm3] X_5748651_SNP [dm6]	C	T	2.077e^-4	0.804	SYNONYMOUS_CODING CG4078	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15256550	2R_15256550_SNP [dm3] 2R_19369045_SNP [dm6]	C	A	2.079e^-4	0.804	SYNONYMOUS_CODING CG9416
2R	16840157	2R_16840157_SNP [dm3] 2R_20952652_SNP [dm6]	G	T	2.086e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6052976	2L_6052976_SNP [dm3] 2L_6052976_SNP [dm6]	T	G	2.088e^-4	0.804	SYNONYMOUS_CODING CG9135	TF binding site mE1_TFBS_sens
3R	24425118	3R_24425118_SNP [dm3] 3R_28599396_SNP [dm6]	C	A	2.091e^-4	0.804	UPSTREAM Hrb98DE & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	5642513	2L_5642513_SNP [dm3] 2L_5642513_SNP [dm6]	A	G	2.091e^-4	0.804	DOWNSTREAM mir-963 & 1 other INTRON CG31646
2L	12111143	2L_12111143_SNP [dm3] 2L_12111143_SNP [dm6]	A	T	2.095e^-4	0.804	UTR_5_PRIME Phae2 DOWNSTREAM Phae1	TF binding site mE1_TFBS_cad
3L	22504888	3L_22504888_INS [dm3] 3L_22511788_INS [dm6]	A	AAGTATC	2.099e^-4	0.804	DOWNSTREAM CR45429 INTERGENIC
3L	15589558	3L_15589558_SNP [dm3] 3L_15596458_SNP [dm6]	G	T	2.112e^-4	0.807	INTRON RhoGAP71E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	5639737	X_5639737_SNP [dm3] X_5745704_SNP [dm6]	A	T	2.127e^-4	0.809	INTRON IntS6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
X	5641452	X_5641452_SNP [dm3] X_5747419_SNP [dm6]	G	C	2.127e^-4	0.809	UPSTREAM CG4078 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	1759703	3L_1759703_SNP [dm3] 3L_1759703_SNP [dm6]	T	C	2.131e^-4	0.809	SYNONYMOUS_CODING Dhc62B DOWNSTREAM CG8001	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11958918	3R_11958918_SNP [dm3] 3R_16133196_SNP [dm6]	A	G	2.147e^-4	0.811	INTRON Sb
X	20707525	X_20707525_SNP [dm3] X_20836498_SNP [dm6]	A	G	2.149e^-4	0.811	INTRON shakB
2R	843225	2R_843225_SNP [dm3] 2R_4955720_SNP [dm6]	T	A	2.154e^-4	0.811	INTRON Ir41a
X	13690073	X_13690073_SNP [dm3] X_13796040_SNP [dm6]	T	G	2.162e^-4	0.811	DOWNSTREAM CG10996 INTRON inaE
3L	16257733	3L_16257733_SNP [dm3] 3L_16264633_SNP [dm6]	A	G	2.164e^-4	0.811	UPSTREAM CG13069 DOWNSTREAM CG13051 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10447279	3L_10447279_SNP [dm3] 3L_10454179_SNP [dm6]	C	A	2.166e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11579332	2L_11579332_SNP [dm3] 2L_11579332_SNP [dm6]	A	T	2.167e^-4	0.811	INTERGENIC
2R	602464	2R_602464_DEL [dm3] 2R_4714959_DEL [dm6]	TA	T	2.179e^-4	0.814	INTRON Nipped-B	transposable element FlyBase
3R	6345677	3R_6345677_SNP [dm3] 3R_10519955_SNP [dm6]	A	T	2.184e^-4	0.814	INTRON hth
2L	18276051	2L_18276051_SNP [dm3] 2L_18276051_SNP [dm6]	A	G	2.188e^-4	0.814	UPSTREAM CG42750 INTERGENIC	TF binding site mE1_TFBS_cad
X	5929532	X_5929532_SNP [dm3] X_6035499_SNP [dm6]	C	T	2.200e^-4	0.817	DOWNSTREAM rux INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	13532019	2L_13532019_SNP [dm3] 2L_13532019_SNP [dm6]	G	T	2.206e^-4	0.818	UPSTREAM CG33644 & 1 other DOWNSTREAM CG33643 INTRON B4
3R	8371991	3R_8371991_SNP [dm3] 3R_12546269_SNP [dm6]	G	A	2.214e^-4	0.818	INTRON Octbeta3R
3R	24034929	3R_24034929_INS [dm3] 3R_28209207_INS [dm6]	C	ATATACAT	2.216e^-4	0.818	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24035654	3R_24035654_SNP [dm3] 3R_28209932_SNP [dm6]	T	A	2.226e^-4	0.819	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	27025182	3R_27025182_SNP [dm3] 3R_31199460_SNP [dm6]	G	A	2.229e^-4	0.819	SYNONYMOUS_CODING CG1544	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8493677	3R_8493677_SNP [dm3] 3R_12667955_SNP [dm6]	A	T	2.238e^-4	0.819	START_GAINED CG14395 UTR_5_PRIME CG14395 INTRON CG14395	TF binding site mE1_TFBS_Trl
2R	18063578	2R_18063578_SNP [dm3] 2R_22176073_SNP [dm6]	C	T	2.253e^-4	0.819	SYNONYMOUS_CODING CG6758 EXON CR45151	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	12643908	3R_12643908_SNP [dm3] 3R_16818186_SNP [dm6]	A	C	2.263e^-4	0.819	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18343367	3R_18343367_SNP [dm3] 3R_22517645_SNP [dm6]	T	C	2.265e^-4	0.819	UTR_3_PRIME Octbeta1R DOWNSTREAM Octbeta1R
3R	14829284	3R_14829284_SNP [dm3] 3R_19003562_SNP [dm6]	T	C	2.266e^-4	0.819	INTRON gukh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18698549	3L_18698549_SNP [dm3] 3L_18705449_SNP [dm6]	G	A	2.280e^-4	0.819	INTERGENIC
X	7063691	X_7063691_SNP [dm3] X_7169658_SNP [dm6]	G	T	2.282e^-4	0.819	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	7063709	X_7063709_SNP [dm3] X_7169676_SNP [dm6]	C	T	2.282e^-4	0.819	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	7063744	X_7063744_SNP [dm3] X_7169711_SNP [dm6]	C	T	2.282e^-4	0.819	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	7063783	X_7063783_SNP [dm3] X_7169750_SNP [dm6]	A	G	2.282e^-4	0.819	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	7063830	X_7063830_SNP [dm3] X_7169797_SNP [dm6]	A	G	2.282e^-4	0.819	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	18658496	3L_18658496_SNP [dm3] 3L_18665396_SNP [dm6]	G	A	2.284e^-4	0.819	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3778614	2R_3778614_SNP [dm3] 2R_7891109_SNP [dm6]	C	A	2.285e^-4	0.819	INTRON CG30377
2R	10442472	2R_10442472_SNP [dm3] 2R_14554967_SNP [dm6]	C	T	2.306e^-4	0.823	UPSTREAM CG43919 INTRON ttv
2L	4495915	2L_4495915_SNP [dm3] 2L_4495915_SNP [dm6]	C	T	2.306e^-4	0.823	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16843326	3R_16843326_DEL [dm3] 3R_21017604_DEL [dm6]	TT	T	2.316e^-4	0.823	UPSTREAM Rlip DOWNSTREAM CG5697 INTERGENIC	TF binding site mE1_TFBS_cad
3L	5324175	3L_5324175_SNP [dm3] 3L_5331075_SNP [dm6]	C	G	2.332e^-4	0.823	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1139692	2R_1139692_SNP [dm3] 2R_5252187_SNP [dm6]	A	T	2.334e^-4	0.823	INTERGENIC
3R	24833297	3R_24833297_SNP [dm3] 3R_29007575_SNP [dm6]	T	C	2.345e^-4	0.823	INTRON wat
2L	12626188	2L_12626188_SNP [dm3] 2L_12626188_SNP [dm6]	T	C	2.346e^-4	0.823	SYNONYMOUS_CODING nub INTRON Ref2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18698557	3L_18698557_SNP [dm3] 3L_18705457_SNP [dm6]	T	C	2.348e^-4	0.823	INTERGENIC
3L	11188869	3L_11188869_SNP [dm3] 3L_11195769_SNP [dm6]	G	T	2.357e^-4	0.823	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
3R	27027791	3R_27027791_SNP [dm3] 3R_31202069_SNP [dm6]	G	T	2.359e^-4	0.823	SYNONYMOUS_CODING CG1544	TF binding site mE1_TFBS_chinmo
2R	18871697	2R_18871697_SNP [dm3] 2R_22984174_SNP [dm6]	A	G	2.377e^-4	0.823	SYNONYMOUS_CODING CG32834 DOWNSTREAM CG32833	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16564147	3L_16564147_SNP [dm3] 3L_16571047_SNP [dm6]	A	G	2.378e^-4	0.823	INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18287948	3R_18287948_SNP [dm3] 3R_22462226_SNP [dm6]	G	T	2.378e^-4	0.823	UPSTREAM AP-2mu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11276774	3L_11276774_SNP [dm3] 3L_11283674_SNP [dm6]	T	A	2.387e^-4	0.823	INTERGENIC
3L	12475571	3L_12475571_SNP [dm3] 3L_12482471_SNP [dm6]	T	C	2.400e^-4	0.823	UPSTREAM CG33725 INTRON CG10663
X	21093096	X_21093096_SNP [dm3] X_21222069_SNP [dm6]	C	G	2.400e^-4	0.823	INTRON CG32521
3R	15362012	3R_15362012_SNP [dm3] 3R_19536290_SNP [dm6]	T	C	2.401e^-4	0.823	INTRON Dys
3R	24427213	3R_24427213_SNP [dm3] 3R_28601491_SNP [dm6]	G	C	2.406e^-4	0.823	UPSTREAM snoRNA:Psi28S-3405a & 4 others INTRON Hrb98DE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	6310283	2L_6310283_SNP [dm3] 2L_6310283_SNP [dm6]	A	G	2.414e^-4	0.823	DOWNSTREAM CG13984 INTRON Ddr
3R	23813785	3R_23813785_SNP [dm3] 3R_27988063_SNP [dm6]	T	C	2.418e^-4	0.823	INTRON betaTub97EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	12059135	2R_12059135_SNP [dm3] 2R_16171630_SNP [dm6]	C	T	2.429e^-4	0.823	SYNONYMOUS_CODING Ptp52F UPSTREAM CG8435	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	16177623	2L_16177623_SNP [dm3] 2L_16177623_SNP [dm6]	A	G	2.433e^-4	0.823	INTRON Ca-alpha1D
2L	11355047	2L_11355047_SNP [dm3] 2L_11355047_SNP [dm6]	T	G	2.435e^-4	0.823	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
2L	6697541	2L_6697541_DEL [dm3] 2L_6697541_DEL [dm6]	CA	C	2.439e^-4	0.823	INTRON Tsp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	7063714	X_7063714_DEL [dm3] X_7169681_DEL [dm6]	TCACG	AT	2.451e^-4	0.823	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	12809548	X_12809548_SNP [dm3] X_12915515_SNP [dm6]	C	T	2.458e^-4	0.823	EXON CR45626
3R	17366066	3R_17366066_SNP [dm3] 3R_21540344_SNP [dm6]	G	T	2.459e^-4	0.823	INTERGENIC
2R	13797028	2R_13797028_SNP [dm3] 2R_17909523_SNP [dm6]	C	T	2.461e^-4	0.823	INTRON Elk
3L	17355887	3L_17355887_SNP [dm3] 3L_17362787_SNP [dm6]	G	A	2.463e^-4	0.823	DOWNSTREAM tap INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
X	13185958	X_13185958_SNP [dm3] X_13291925_SNP [dm6]	G	C	2.464e^-4	0.823	SYNONYMOUS_CODING CG15744	TF binding site mE1_TFBS_chinmo
3L	17469961	3L_17469961_SNP [dm3] 3L_17476861_SNP [dm6]	C	T	2.465e^-4	0.823	UTR_3_PRIME CG34250 DOWNSTREAM CG7580 & 2 others	TF binding site mE1_TFBS_sens
2L	13263245	2L_13263245_SNP [dm3] 2L_13263245_SNP [dm6]	A	G	2.477e^-4	0.823	INTRON CG44085
3R	27120889	3R_27120889_SNP [dm3] 3R_31295167_SNP [dm6]	T	C	2.477e^-4	0.823	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22697857	3R_22697857_SNP [dm3] 3R_26872135_SNP [dm6]	T	C	2.477e^-4	0.823	UTR_3_PRIME Rb97D UPSTREAM BM-40-SPARC DOWNSTREAM Rb97D	TF binding site mE1_TFBS_HSA
2R	13486460	2R_13486460_SNP [dm3] 2R_17598955_SNP [dm6]	T	C	2.480e^-4	0.823	UTR_3_PRIME CG43920 DOWNSTREAM CG43920 & 1 other INTRON lack
3R	1601210	3R_1601210_SNP [dm3] 3R_5775488_SNP [dm6]	T	A	2.485e^-4	0.823	INTRON CG2082
2L	10093392	2L_10093392_SNP [dm3] 2L_10093392_SNP [dm6]	C	T	2.486e^-4	0.823	UPSTREAM CG34109 INTRON CG44153
2R	995156	2R_995156_SNP [dm3] 2R_5107651_SNP [dm6]	T	A	2.493e^-4	0.823	INTERGENIC	transposable element FlyBase
X	8323763	X_8323763_SNP [dm3] X_8429730_SNP [dm6]	A	T	2.500e^-4	0.823	UTR_3_PRIME Trf2
2L	3888930	2L_3888930_SNP [dm3] 2L_3888930_SNP [dm6]	A	G	2.500e^-4	0.823	UPSTREAM capu INTRON capu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	16287538	3R_16287538_SNP [dm3] 3R_20461816_SNP [dm6]	T	A	2.502e^-4	0.823	INTRON Gfrl
3R	16287539	3R_16287539_SNP [dm3] 3R_20461817_SNP [dm6]	T	A	2.502e^-4	0.823	INTRON Gfrl
2R	10873177	2R_10873177_SNP [dm3] 2R_14985672_SNP [dm6]	T	G	2.505e^-4	0.823	INTRON pcs	TF binding site mE1_TFBS_cad
3R	23889797	3R_23889797_SNP [dm3] 3R_28064075_SNP [dm6]	G	C	2.509e^-4	0.823	INTRON CG34362
X	9763413	X_9763413_SNP [dm3] X_9869380_SNP [dm6]	G	T	2.512e^-4	0.823	UPSTREAM CG45060 INTERGENIC
3L	14383567	3L_14383567_SNP [dm3] 3L_14390467_SNP [dm6]	G	T	2.517e^-4	0.823	INTERGENIC
2L	6697422	2L_6697422_SNP [dm3] 2L_6697422_SNP [dm6]	G	A	2.517e^-4	0.823	SYNONYMOUS_CODING Tsp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	8375340	X_8375340_SNP [dm3] X_8481307_SNP [dm6]	C	T	2.524e^-4	0.823	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
2L	12115985	2L_12115985_SNP [dm3] 2L_12115985_SNP [dm6]	A	T	2.526e^-4	0.823	INTRON CG17211
2L	10541457	2L_10541457_SNP [dm3] 2L_10541457_SNP [dm6]	C	A	2.530e^-4	0.823	INTERGENIC
X	13690295	X_13690295_DEL [dm3] X_13796262_DEL [dm6]	ATTTTAATA	A	2.535e^-4	0.823	DOWNSTREAM CG10996 INTRON inaE
3R	27138648	3R_27138648_SNP [dm3] 3R_31312926_SNP [dm6]	A	C	2.544e^-4	0.823	INTRON CG34347	TF binding site mE1_TFBS_inv
2R	996912	2R_996912_DEL [dm3] 2R_5109407_DEL [dm6]	TT	T	2.545e^-4	0.823	INTERGENIC
3L	6333142	3L_6333142_DEL [dm3] 3L_6340042_DEL [dm6]	TTT	T	2.546e^-4	0.823	INTRON CG13300	TF binding site BDTNP1_TFBS_twi
X	13548779	X_13548779_SNP [dm3] X_13654746_SNP [dm6]	T	C	2.550e^-4	0.823	INTRON NFAT
3R	27129979	3R_27129979_SNP [dm3] 3R_31304257_SNP [dm6]	C	T	2.550e^-4	0.823	SYNONYMOUS_CODING CG11340
3R	25239890	3R_25239890_INS [dm3] 3R_29414168_INS [dm6]	C	CAACA	2.557e^-4	0.823	INTRON Ptp99A
2L	5880240	2L_5880240_SNP [dm3] 2L_5880240_SNP [dm6]	T	C	2.559e^-4	0.823	UPSTREAM rau INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5880247	2L_5880247_SNP [dm3] 2L_5880247_SNP [dm6]	C	T	2.559e^-4	0.823	UPSTREAM rau INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9154527	2R_9154527_SNP [dm3] 2R_13267022_SNP [dm6]	A	G	2.565e^-4	0.823	DOWNSTREAM CG42319 & 1 other INTERGENIC
2R	987631	2R_987631_SNP [dm3] 2R_5100126_SNP [dm6]	G	A	2.565e^-4	0.823	INTERGENIC	transposable element FlyBase
3R	21669261	3R_21669261_SNP [dm3] 3R_25843539_SNP [dm6]	A	T	2.571e^-4	0.823	UPSTREAM CR45653 DOWNSTREAM alpha4GT2 INTERGENIC
3L	10422628	3L_10422628_INS [dm3] 3L_10429528_INS [dm6]	T	TT	2.587e^-4	0.823	DOWNSTREAM Ir67b INTERGENIC
3R	20795777	3R_20795777_DEL [dm3] 3R_24970055_DEL [dm6]	TC	T	2.594e^-4	0.823	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24726484	3R_24726484_SNP [dm3] 3R_28900762_SNP [dm6]	C	T	2.596e^-4	0.823	INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24842497	3R_24842497_SNP [dm3] 3R_29016775_SNP [dm6]	A	T	2.596e^-4	0.823	INTRON wat
2R	608124	2R_608124_SNP [dm3] 2R_4720619_SNP [dm6]	C	A	2.601e^-4	0.823	INTRON Nipped-B	TF binding site mE1_TFBS_inv
X	12871828	X_12871828_SNP [dm3] X_12977795_SNP [dm6]	G	A	2.616e^-4	0.823	INTERGENIC
X	8335507	X_8335507_SNP [dm3] X_8441474_SNP [dm6]	C	T	2.618e^-4	0.823	SYNONYMOUS_CODING CG12123 DOWNSTREAM CG1440	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	17068644	2R_17068644_SNP [dm3] 2R_21181139_SNP [dm6]	C	T	2.622e^-4	0.823	UPSTREAM tRNA:CR33539 INTRON Pu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	14262223	X_14262223_SNP [dm3] X_14368190_SNP [dm6]	C	T	2.622e^-4	0.823	INTRON dpr8
3R	22281775	3R_22281775_SNP [dm3] 3R_26456053_SNP [dm6]	T	A	2.626e^-4	0.823	NON_SYNONYMOUS_CODING Pdf UPSTREAM CG14237 DOWNSTREAM CG43117
3R	22856141	3R_22856141_SNP [dm3] 3R_27030419_SNP [dm6]	G	A	2.629e^-4	0.823	INTRON RYa-R
X	6629318	X_6629318_SNP [dm3] X_6735285_SNP [dm6]	T	A	2.635e^-4	0.823	INTRON CG3168 & 1 other
2L	4495418	2L_4495418_SNP [dm3] 2L_4495418_SNP [dm6]	C	A	2.635e^-4	0.823	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1891381	2L_1891381_SNP [dm3] 2L_1891381_SNP [dm6]	A	T	2.642e^-4	0.823	INTRON CG7337	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	11591033	2L_11591033_INS [dm3] 2L_11591033_INS [dm6]	T	TT	2.647e^-4	0.823	DOWNSTREAM Acp33A INTRON kek2
2L	6758790	2L_6758790_SNP [dm3] 2L_6758790_SNP [dm6]	T	C	2.650e^-4	0.823	SYNONYMOUS_CODING CG11322	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14265072	X_14265072_DEL [dm3] X_14371039_DEL [dm6]	GCTGTAAATCTGG...	G	2.656e^-4	0.823	INTRON dpr8
2R	999359	2R_999359_SNP [dm3] 2R_5111854_SNP [dm6]	C	T	2.658e^-4	0.823	INTERGENIC
3R	17363704	3R_17363704_SNP [dm3] 3R_21537982_SNP [dm6]	G	A	2.660e^-4	0.823	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	24035416	3R_24035416_SNP [dm3] 3R_28209694_SNP [dm6]	G	T	2.663e^-4	0.823	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13542130	2L_13542130_SNP [dm3] 2L_13542130_SNP [dm6]	C	T	2.664e^-4	0.823	UPSTREAM CG16853 DOWNSTREAM CG16852 INTRON B4 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	16330786	2R_16330786_SNP [dm3] 2R_20443281_SNP [dm6]	A	G	2.673e^-4	0.825	INTRON CG12484	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13534461	2R_13534461_SNP [dm3] 2R_17646956_SNP [dm6]	T	C	2.681e^-4	0.825	UTR_3_PRIME CCHa1-R
3R	20686556	3R_20686556_SNP [dm3] 3R_24860834_SNP [dm6]	A	C	2.683e^-4	0.825	UPSTREAM CG13639 DOWNSTREAM CG13640 INTERGENIC
2L	9927000	2L_9927000_SNP [dm3] 2L_9927000_SNP [dm6]	C	G	2.687e^-4	0.825	SYNONYMOUS_CODING CG42366	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18965567	2R_18965567_SNP [dm3] 2R_23078044_SNP [dm6]	C	T	2.694e^-4	0.826	SYNONYMOUS_CODING Art7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11224056	2L_11224056_SNP [dm3] 2L_11224056_SNP [dm6]	A	T	2.709e^-4	0.826	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_sens
3L	11276788	3L_11276788_SNP [dm3] 3L_11283688_SNP [dm6]	G	T	2.711e^-4	0.826	INTERGENIC
3L	3766436	3L_3766436_SNP [dm3] 3L_3766436_SNP [dm6]	T	C	2.718e^-4	0.826	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13154339	2L_13154339_SNP [dm3] 2L_13154339_SNP [dm6]	A	C	2.748e^-4	0.826	INTERGENIC
3R	25284645	3R_25284645_SNP [dm3] 3R_29458923_SNP [dm6]	T	C	2.750e^-4	0.826	INTRON Ptp99A EXON CR44022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	12166784	2R_12166784_SNP [dm3] 2R_16279279_SNP [dm6]	T	C	2.754e^-4	0.826	UPSTREAM cato & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15282363	2R_15282363_SNP [dm3] 2R_19394858_SNP [dm6]	C	T	2.756e^-4	0.826	INTRON SdhA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	16383888	2L_16383888_SNP [dm3] 2L_16383888_SNP [dm6]	C	T	2.762e^-4	0.826	INTERGENIC
X	7542167	X_7542167_SNP [dm3] X_7648134_SNP [dm6]	G	A	2.764e^-4	0.826	INTRON ct
3L	2435477	3L_2435477_SNP [dm3] 3L_2435477_SNP [dm6]	A	G	2.764e^-4	0.826	NON_SYNONYMOUS_CODING CG45186 UTR_5_PRIME CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3489376	2L_3489376_DEL [dm3] 2L_3489376_DEL [dm6]	TT	T	2.766e^-4	0.826	INTRON CG15414
2R	9338132	2R_9338132_SNP [dm3] 2R_13450627_SNP [dm6]	G	A	2.768e^-4	0.826	UTR_5_PRIME cbs UPSTREAM cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	15126648	2L_15126648_SNP [dm3] 2L_15126648_SNP [dm6]	A	T	2.773e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19590997	3R_19590997_SNP [dm3] 3R_23765275_SNP [dm6]	A	T	2.776e^-4	0.826	INTRON Lsd-1
3R	18412279	3R_18412279_SNP [dm3] 3R_22586557_SNP [dm6]	C	G	2.778e^-4	0.826	SYNONYMOUS_CODING btn DOWNSTREAM CG6937	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7952796	3L_7952796_DEL [dm3] 3L_7959696_DEL [dm6]	CG	T	2.789e^-4	0.826	INTERGENIC
2L	15061208	2L_15061208_SNP [dm3] 2L_15061208_SNP [dm6]	A	G	2.800e^-4	0.826	UPSTREAM vas & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17848608	2R_17848608_SNP [dm3] 2R_21961103_SNP [dm6]	A	G	2.802e^-4	0.826	INTERGENIC
3R	20462324	3R_20462324_SNP [dm3] 3R_24636602_SNP [dm6]	T	C	2.806e^-4	0.826	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9343310	2R_9343310_SNP [dm3] 2R_13455805_SNP [dm6]	T	G	2.807e^-4	0.826	SYNONYMOUS_CODING arr
3L	5324118	3L_5324118_DEL [dm3] 3L_5331018_DEL [dm6]	AGA	A	2.812e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12195320	2L_12195320_SNP [dm3] 2L_12195320_SNP [dm6]	G	A	2.816e^-4	0.826	INTRON aret
2L	13237757	2L_13237757_SNP [dm3] 2L_13237757_SNP [dm6]	C	G	2.820e^-4	0.826	INTRON CG5867
3R	26127808	3R_26127808_SNP [dm3] 3R_30302086_SNP [dm6]	T	C	2.823e^-4	0.826	INTRON hdc
2L	15161009	2L_15161009_SNP [dm3] 2L_15161009_SNP [dm6]	G	C	2.823e^-4	0.826	UPSTREAM CR44771 DOWNSTREAM CG4168 EXON CR44770
2R	17081686	2R_17081686_SNP [dm3] 2R_21194181_SNP [dm6]	C	A	2.829e^-4	0.826	INTRON Lapsyn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
2L	18305048	2L_18305048_SNP [dm3] 2L_18305048_SNP [dm6]	C	A	2.830e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	16287542	3R_16287542_SNP [dm3] 3R_20461820_SNP [dm6]	G	A	2.832e^-4	0.826	INTRON Gfrl
3R	16287545	3R_16287545_DEL [dm3] 3R_20461823_DEL [dm6]	ATCTGGATGAC...	A	2.832e^-4	0.826	INTRON Gfrl
3R	16947848	3R_16947848_SNP [dm3] 3R_21122126_SNP [dm6]	T	C	2.833e^-4	0.826	SYNONYMOUS_CODING slmb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25298415	3R_25298415_INS [dm3] 3R_29472693_INS [dm6]	CC	TTTT	2.836e^-4	0.826	INTRON Ptp99A
X	12592418	X_12592418_SNP [dm3] X_12698385_SNP [dm6]	A	G	2.841e^-4	0.826	INTRON Smr	TF binding site BDTNP1_TFBS_dl
X	4200838	X_4200838_INS [dm3] X_4306805_INS [dm6]	T	TATCT	2.841e^-4	0.826	INTERGENIC
X	19268218	X_19268218_SNP [dm3] X_19374185_SNP [dm6]	A	T	2.877e^-4	0.833	INTRON kek5
3L	20701189	3L_20701189_SNP [dm3] 3L_20708089_SNP [dm6]	T	C	2.878e^-4	0.833	INTERGENIC	regulatory region REDfly_CRMs
3L	14002263	3L_14002263_SNP [dm3] 3L_14009163_SNP [dm6]	G	A	2.879e^-4	0.833	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14931218	3R_14931218_SNP [dm3] 3R_19105496_SNP [dm6]	C	G	2.884e^-4	0.833	INTRON CG6040
X	9295261	X_9295261_SNP [dm3] X_9401228_SNP [dm6]	C	T	2.889e^-4	0.833	INTRON mgl
3L	10422754	3L_10422754_SNP [dm3] 3L_10429654_SNP [dm6]	C	T	2.896e^-4	0.834	DOWNSTREAM Ir67b INTERGENIC
2R	10873137	2R_10873137_SNP [dm3] 2R_14985632_SNP [dm6]	C	T	2.909e^-4	0.834	INTRON pcs	TF binding site mE1_TFBS_cad
3R	24649492	3R_24649492_SNP [dm3] 3R_28823770_SNP [dm6]	G	C	2.911e^-4	0.834	NON_SYNONYMOUS_CODING CG1647 DOWNSTREAM WASp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	16792816	2L_16792816_SNP [dm3] 2L_16792816_SNP [dm6]	C	T	2.916e^-4	0.834	SYNONYMOUS_CODING CG17928
2R	5979369	2R_5979369_SNP [dm3] 2R_10091864_SNP [dm6]	T	C	2.917e^-4	0.834	SYNONYMOUS_CODING CG2269 INTRON CG2269
2R	5979385	2R_5979385_SNP [dm3] 2R_10091880_SNP [dm6]	A	G	2.917e^-4	0.834	NON_SYNONYMOUS_CODING CG2269 INTRON CG2269
X	4734184	X_4734184_SNP [dm3] X_4840151_SNP [dm6]	T	G	2.952e^-4	0.842	UPSTREAM CG42594 INTERGENIC
2L	17095445	2L_17095445_SNP [dm3] 2L_17095445_SNP [dm6]	C	A	2.954e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	8287212	X_8287212_SNP [dm3] X_8393179_SNP [dm6]	C	T	2.962e^-4	0.843	INTERGENIC
3L	4917163	3L_4917163_SNP [dm3] 3L_4917163_SNP [dm6]	T	A	2.975e^-4	0.844	INTRON Rh50
2R	969243	2R_969243_SNP [dm3] 2R_5081738_SNP [dm6]	A	C	2.982e^-4	0.844	DOWNSTREAM CR43360 INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
3L	18268277	3L_18268277_SNP [dm3] 3L_18275177_SNP [dm6]	A	C	2.984e^-4	0.844	INTERGENIC
2L	16863739	2L_16863739_SNP [dm3] 2L_16863739_SNP [dm6]	T	A	2.993e^-4	0.844	INTERGENIC
3L	16439684	3L_16439684_SNP [dm3] 3L_16446584_SNP [dm6]	A	C	2.998e^-4	0.844	INTRON CG33158 & 1 other
3R	6345661	3R_6345661_SNP [dm3] 3R_10519939_SNP [dm6]	C	A	3.001e^-4	0.844	INTRON hth
2L	11207839	2L_11207839_SNP [dm3] 2L_11207839_SNP [dm6]	A	T	3.001e^-4	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3671513	3L_3671513_SNP [dm3] 3L_3671513_SNP [dm6]	C	T	3.004e^-4	0.844	INTERGENIC
X	19191739	X_19191739_SNP [dm3] X_19297706_SNP [dm6]	A	T	3.016e^-4	0.844	UTR_5_PRIME CG8034	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3L	14097948	3L_14097948_SNP [dm3] 3L_14104848_SNP [dm6]	T	C	3.019e^-4	0.844	SYNONYMOUS_CODING Sox21a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12834160	3L_12834160_SNP [dm3] 3L_12841060_SNP [dm6]	G	A	3.020e^-4	0.844	INTRON CG10960	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	973794	2R_973794_SNP [dm3] 2R_5086289_SNP [dm6]	C	A	3.024e^-4	0.844	INTERGENIC
3L	16653718	3L_16653718_SNP [dm3] 3L_16660618_SNP [dm6]	T	A	3.033e^-4	0.844	INTRON Baldspot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl mE1_TFBS_Ubx
2R	9345853	2R_9345853_SNP [dm3] 2R_13458348_SNP [dm6]	C	T	3.042e^-4	0.844	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	983942	2R_983942_SNP [dm3] 2R_5096437_SNP [dm6]	T	C	3.045e^-4	0.844	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
2R	983943	2R_983943_SNP [dm3] 2R_5096438_SNP [dm6]	C	A	3.045e^-4	0.844	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
2R	949295	2R_949295_DEL [dm3] 2R_5061790_DEL [dm6]	CCT	C	3.048e^-4	0.844	INTERGENIC
3R	13076310	3R_13076310_INS [dm3] 3R_17250588_INS [dm6]	C	CTG	3.050e^-4	0.844	INTRON beat-IIb
3R	25446960	3R_25446960_SNP [dm3] 3R_29621238_SNP [dm6]	T	C	3.063e^-4	0.844	DOWNSTREAM CG1907 INTERGENIC
3L	10378368	3L_10378368_SNP [dm3] 3L_10385268_SNP [dm6]	G	A	3.065e^-4	0.844	INTERGENIC
2R	949404	2R_949404_DEL [dm3] 2R_5061899_DEL [dm6]	CCTAGC	C	3.073e^-4	0.844	INTERGENIC
2L	6984413	2L_6984413_SNP [dm3] 2L_6984413_SNP [dm6]	A	G	3.076e^-4	0.844	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17069947	2R_17069947_SNP [dm3] 2R_21182442_SNP [dm6]	G	A	3.076e^-4	0.844	UTR_3_PRIME Pu UPSTREAM tRNA:G3:57BCb & 1 other DOWNSTREAM tRNA:CR30209	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_zfh1
2R	12011636	2R_12011636_SNP [dm3] 2R_16124131_SNP [dm6]	T	G	3.077e^-4	0.844	SYNONYMOUS_CODING CG30095 UPSTREAM spin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Ubx
2R	10740463	2R_10740463_SNP [dm3] 2R_14852958_SNP [dm6]	T	C	3.082e^-4	0.845	UTR_5_PRIME Ercc1 UPSTREAM SMC2 DOWNSTREAM Ciao1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	10873909	2R_10873909_SNP [dm3] 2R_14986404_SNP [dm6]	T	C	3.112e^-4	0.851	INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	843380	2R_843380_SNP [dm3] 2R_4955875_SNP [dm6]	A	C	3.122e^-4	0.852	INTRON Ir41a	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	843383	2R_843383_SNP [dm3] 2R_4955878_SNP [dm6]	T	C	3.122e^-4	0.852	INTRON Ir41a	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	4291844	3R_4291844_SNP [dm3] 3R_8466122_SNP [dm6]	G	A	3.127e^-4	0.852	INTRON CG45263	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	993500	2R_993500_SNP [dm3] 2R_5105995_SNP [dm6]	T	C	3.146e^-4	0.855	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
3R	15873669	3R_15873669_SNP [dm3] 3R_20047947_SNP [dm6]	T	C	3.156e^-4	0.855	SYNONYMOUS_CODING CG33934 UTR_3_PRIME Indy-2 INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3L	10559827	3L_10559827_SNP [dm3] 3L_10566727_SNP [dm6]	C	T	3.157e^-4	0.855	INTRON A2bp1	TF binding site mE1_TFBS_inv
3L	7329014	3L_7329014_SNP [dm3] 3L_7335914_SNP [dm6]	G	C	3.158e^-4	0.855	UPSTREAM CG43780 & 1 other INTRON eco	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	975884	2R_975884_SNP [dm3] 2R_5088379_SNP [dm6]	G	A	3.169e^-4	0.856	INTERGENIC	transposable element FlyBase
3L	18052853	3L_18052853_SNP [dm3] 3L_18059753_SNP [dm6]	T	A	3.171e^-4	0.856	UTR_5_PRIME Eip75B UPSTREAM Eip75B
3R	23935470	3R_23935470_SNP [dm3] 3R_28109748_SNP [dm6]	G	A	3.175e^-4	0.856	INTERGENIC
2L	15126652	2L_15126652_INS [dm3] 2L_15126652_INS [dm6]	T	TTTTTTATATTTATTTTTAT...	3.189e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	7950202	3R_7950202_SNP [dm3] 3R_12124480_SNP [dm6]	C	G	3.203e^-4	0.857	INTRON CG4702	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	20538036	3R_20538036_SNP [dm3] 3R_24712314_SNP [dm6]	C	G	3.204e^-4	0.857	UPSTREAM CG13627 DOWNSTREAM slo INTERGENIC
3L	3766428	3L_3766428_SNP [dm3] 3L_3766428_SNP [dm6]	T	C	3.205e^-4	0.857	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12330480	2R_12330480_MNP [dm3] 2R_16442975_MNP [dm6]	CTT	AAG	3.206e^-4	0.857	UPSTREAM CG4409 INTERGENIC
2R	12332304	2R_12332304_SNP [dm3] 2R_16444799_SNP [dm6]	G	C	3.206e^-4	0.857	UTR_3_PRIME CG4409
2R	998722	2R_998722_INS [dm3] 2R_5111217_INS [dm6]	A	AATGTAGAGCAG...	3.235e^-4	0.857	INTERGENIC	TF binding site mE1_TFBS_sens
3L	10641748	3L_10641748_SNP [dm3] 3L_10648648_SNP [dm6]	T	C	3.238e^-4	0.857	INTRON CG32066	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24017485	3R_24017485_SNP [dm3] 3R_28191763_SNP [dm6]	A	G	3.241e^-4	0.857	INTRON CG34354
X	18869680	X_18869680_DEL [dm3] X_18975647_DEL [dm6]	TATAGCTCTAAGTT...	T	3.243e^-4	0.857	INTRON CG43759	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	13964633	X_13964633_SNP [dm3] X_14070600_SNP [dm6]	G	C	3.243e^-4	0.857	UPSTREAM tRNA:S474:12Eh INTERGENIC
3L	10378149	3L_10378149_SNP [dm3] 3L_10385049_SNP [dm6]	C	T	3.254e^-4	0.857	INTERGENIC
3R	23521360	3R_23521360_SNP [dm3] 3R_27695638_SNP [dm6]	C	A	3.254e^-4	0.857	SYNONYMOUS_CODING CG43320 DOWNSTREAM Acp98AB & 1 other	TF binding site mE1_TFBS_sens
2L	16792354	2L_16792354_SNP [dm3] 2L_16792354_SNP [dm6]	C	A	3.255e^-4	0.857	INTRON CG17928
2R	18457868	2R_18457868_SNP [dm3] 2R_22570363_SNP [dm6]	G	A	3.255e^-4	0.857	INTRON dnr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	17365642	3R_17365642_SNP [dm3] 3R_21539920_SNP [dm6]	A	G	3.257e^-4	0.857	INTERGENIC
2R	8175704	2R_8175704_SNP [dm3] 2R_12288199_SNP [dm6]	G	A	3.259e^-4	0.857	INTRON CG42700
3R	22698514	3R_22698514_INS [dm3] 3R_26872792_INS [dm6]	A	CGT	3.262e^-4	0.857	UTR_3_PRIME Rb97D UPSTREAM BM-40-SPARC DOWNSTREAM Rb97D
2R	16380459	2R_16380459_SNP [dm3] 2R_20492954_SNP [dm6]	G	A	3.282e^-4	0.861	UPSTREAM CR44643 INTERGENIC
2R	1016061	2R_1016061_SNP [dm3] 2R_5128556_SNP [dm6]	C	A	3.294e^-4	0.863	UPSTREAM gus INTRON CR43256	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
2L	4495239	2L_4495239_SNP [dm3] 2L_4495239_SNP [dm6]	G	A	3.297e^-4	0.863	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12898075	3L_12898075_SNP [dm3] 3L_12904975_SNP [dm6]	A	G	3.314e^-4	0.863	INTERGENIC
3L	12898087	3L_12898087_SNP [dm3] 3L_12904987_SNP [dm6]	A	T	3.314e^-4	0.863	INTERGENIC
X	13548797	X_13548797_SNP [dm3] X_13654764_SNP [dm6]	A	G	3.315e^-4	0.863	INTRON NFAT
3R	14066977	3R_14066977_SNP [dm3] 3R_18241255_SNP [dm6]	G	A	3.318e^-4	0.863	SYNONYMOUS_CODING CG7156 UTR_3_PRIME CG7156	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	3197555	3L_3197555_SNP [dm3] 3L_3197555_SNP [dm6]	T	G	3.326e^-4	0.864	UTR_5_PRIME CG14966 DOWNSTREAM CG32276 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6186612	2L_6186612_SNP [dm3] 2L_6186612_SNP [dm6]	T	A	3.346e^-4	0.866	INTRON CG34380	TF binding site BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	5140217	3L_5140217_SNP [dm3] 3L_5147117_SNP [dm6]	G	T	3.355e^-4	0.866	SPLICE_SITE_REGION Aats-ala-m INTRON Aats-ala-m	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_sens
2R	18873173	2R_18873173_SNP [dm3] 2R_22985650_SNP [dm6]	A	C	3.356e^-4	0.866	SYNONYMOUS_CODING CG9897 UTR_5_PRIME twi UTR_3_PRIME CG9897 UPSTREAM mir-4939 & 1 other EXON CR42742
2R	860226	2R_860226_SNP [dm3] 2R_4972721_SNP [dm6]	A	G	3.359e^-4	0.866	INTRON Ir41a
2L	4495579	2L_4495579_SNP [dm3] 2L_4495579_SNP [dm6]	G	A	3.366e^-4	0.866	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20309299	3R_20309299_SNP [dm3] 3R_24483577_SNP [dm6]	T	A	3.377e^-4	0.866	INTERGENIC
2R	12329091	2R_12329091_SNP [dm3] 2R_16441586_SNP [dm6]	C	T	3.384e^-4	0.866	INTERGENIC
3R	14912846	3R_14912846_SNP [dm3] 3R_19087124_SNP [dm6]	A	C	3.387e^-4	0.866	INTRON cdi	TF binding site mE1_TFBS_chinmo
3L	5693480	3L_5693480_SNP [dm3] 3L_5700380_SNP [dm6]	C	G	3.396e^-4	0.866	INTRON sif
2L	16870342	2L_16870342_SNP [dm3] 2L_16870342_SNP [dm6]	T	C	3.396e^-4	0.866	UPSTREAM CR31781 EXON CR31781	TF binding site mE1_TFBS_cad
2L	16012167	2L_16012167_SNP [dm3] 2L_16012167_SNP [dm6]	A	G	3.397e^-4	0.866	INTRON beat-Ic
2R	964865	2R_964865_SNP [dm3] 2R_5077360_SNP [dm6]	A	G	3.398e^-4	0.866	INTERGENIC	transposable element FlyBase
2R	996605	2R_996605_SNP [dm3] 2R_5109100_SNP [dm6]	C	T	3.400e^-4	0.866	INTERGENIC
2R	998994	2R_998994_SNP [dm3] 2R_5111489_SNP [dm6]	A	T	3.400e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11836397	2L_11836397_SNP [dm3] 2L_11836397_SNP [dm6]	A	G	3.407e^-4	0.866	UPSTREAM Sfp33A4 DOWNSTREAM CR45014 & 1 other INTRON Pde1c
3R	1756913	3R_1756913_SNP [dm3] 3R_5931191_SNP [dm6]	T	A	3.408e^-4	0.866	INTRON CG34113
3R	17365834	3R_17365834_SNP [dm3] 3R_21540112_SNP [dm6]	A	T	3.422e^-4	0.866	INTERGENIC
2R	743692	2R_743692_DEL [dm3] 2R_4856187_DEL [dm6]	CT	C	3.423e^-4	0.866	INTERGENIC	transposable element FlyBase
3L	3013451	3L_3013451_SNP [dm3] 3L_3013451_SNP [dm6]	C	T	3.423e^-4	0.866	INTERGENIC
3R	22856126	3R_22856126_SNP [dm3] 3R_27030404_SNP [dm6]	A	G	3.431e^-4	0.867	INTRON RYa-R
2R	9368985	2R_9368985_SNP [dm3] 2R_13481480_SNP [dm6]	A	G	3.440e^-4	0.868	INTRON arr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1345927	2L_1345927_SNP [dm3] 2L_1345927_SNP [dm6]	A	C	3.442e^-4	0.868	UPSTREAM CR45005 DOWNSTREAM CR45006 & 1 other INTERGENIC
3R	21056714	3R_21056714_SNP [dm3] 3R_25230992_SNP [dm6]	A	C	3.454e^-4	0.869	INTRON Cad96Cb
3R	12429047	3R_12429047_SNP [dm3] 3R_16603325_SNP [dm6]	A	T	3.459e^-4	0.869	INTRON CG10345
3R	16324674	3R_16324674_SNP [dm3] 3R_20498952_SNP [dm6]	T	C	3.462e^-4	0.869	INTERGENIC
2L	19076086	2L_19076086_SNP [dm3] 2L_19076086_SNP [dm6]	A	T	3.468e^-4	0.87	UPSTREAM CR33315 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12980515	3L_12980515_SNP [dm3] 3L_12987415_SNP [dm6]	C	T	3.483e^-4	0.871	INTERGENIC
3L	16439677	3L_16439677_SNP [dm3] 3L_16446577_SNP [dm6]	A	T	3.486e^-4	0.871	INTRON CG33158 & 1 other
2L	17996743	2L_17996743_SNP [dm3] 2L_17996743_SNP [dm6]	T	C	3.488e^-4	0.871	INTERGENIC
3L	4107394	3L_4107394_SNP [dm3] 3L_4107394_SNP [dm6]	A	T	3.498e^-4	0.872	UPSTREAM Ack DOWNSTREAM Fit1 EXON CR45670
3L	5258079	3L_5258079_SNP [dm3] 3L_5264979_SNP [dm6]	A	C	3.499e^-4	0.872	INTRON shep
3L	17464236	3L_17464236_SNP [dm3] 3L_17471136_SNP [dm6]	G	A	3.509e^-4	0.873	INTRON CG7589
3R	13024024	3R_13024024_SNP [dm3] 3R_17198302_SNP [dm6]	A	G	3.522e^-4	0.874	INTRON Mur89F
X	12345407	X_12345407_SNP [dm3] X_12451374_SNP [dm6]	C	T	3.525e^-4	0.874	SYNONYMOUS_CODING Pkcdelta
3R	24568571	3R_24568571_SNP [dm3] 3R_28742849_SNP [dm6]	G	C	3.534e^-4	0.875	INTRON AstA-R2
3L	16653655	3L_16653655_SNP [dm3] 3L_16660555_SNP [dm6]	T	C	3.545e^-4	0.876	INTRON Baldspot	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl mE1_TFBS_Ubx
3R	1749652	3R_1749652_INS [dm3] 3R_5923930_INS [dm6]	A	AT	3.558e^-4	0.876	INTRON CG34113	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22952981	3R_22952981_SNP [dm3] 3R_27127259_SNP [dm6]	A	C	3.562e^-4	0.876	NON_SYNONYMOUS_CODING CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16792826	2L_16792826_SNP [dm3] 2L_16792826_SNP [dm6]	A	T	3.563e^-4	0.876	NON_SYNONYMOUS_CODING CG17928
3R	23452015	3R_23452015_SNP [dm3] 3R_27626293_SNP [dm6]	C	A	3.563e^-4	0.876	UPSTREAM CG5612 INTRON Tusp
2L	13105742	2L_13105742_SNP [dm3] 2L_13105742_SNP [dm6]	T	A	3.564e^-4	0.876	DOWNSTREAM CR45461 INTERGENIC
3R	10669748	3R_10669748_SNP [dm3] 3R_14844026_SNP [dm6]	T	C	3.567e^-4	0.876	INTRON btsz
3R	14161017	3R_14161017_SNP [dm3] 3R_18335295_SNP [dm6]	G	A	3.581e^-4	0.877	INTRON CG15803
X	16156173	X_16156173_SNP [dm3] X_16262140_SNP [dm6]	G	C	3.582e^-4	0.877	INTERGENIC
3L	10440226	3L_10440226_SNP [dm3] 3L_10447126_SNP [dm6]	T	C	3.596e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	17066231	2L_17066231_SNP [dm3] 2L_17066231_SNP [dm6]	G	A	3.606e^-4	0.878	INTERGENIC
3L	8140022	3L_8140022_SNP [dm3] 3L_8146922_SNP [dm6]	A	G	3.612e^-4	0.878	INTRON CG13676
2R	6026889	2R_6026889_SNP [dm3] 2R_10139384_SNP [dm6]	A	C	3.615e^-4	0.878	UTR_5_PRIME Or46a DOWNSTREAM CG12917 EXON CR43467
3R	23732111	3R_23732111_SNP [dm3] 3R_27906389_SNP [dm6]	G	C	3.617e^-4	0.878	UPSTREAM CG34353 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	14710669	2L_14710669_SNP [dm3] 2L_14710669_SNP [dm6]	A	G	3.620e^-4	0.878	INTERGENIC
X	8797732	X_8797732_DEL [dm3] X_8903699_DEL [dm6]	CGC	C	3.620e^-4	0.878	UTR_3_PRIME Rbm13 DOWNSTREAM e_r_ & 1 other
2L	17056601	2L_17056601_SNP [dm3] 2L_17056601_SNP [dm6]	A	T	3.639e^-4	0.879	INTERGENIC
2L	2182058	2L_2182058_SNP [dm3] 2L_2182058_SNP [dm6]	T	A	3.645e^-4	0.879	EXON CR43751	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	12809575	X_12809575_SNP [dm3] X_12915542_SNP [dm6]	A	C	3.647e^-4	0.879	EXON CR45626
X	5638472	X_5638472_SNP [dm3] X_5744439_SNP [dm6]	A	G	3.654e^-4	0.879	UTR_5_PRIME IntS6 INTRON IntS6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18861439	X_18861439_SNP [dm3] X_18967406_SNP [dm6]	T	C	3.659e^-4	0.879	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24658738	3R_24658738_SNP [dm3] 3R_28833016_SNP [dm6]	A	G	3.663e^-4	0.879	UTR_3_PRIME Apc UPSTREAM WASp
2L	12203236	2L_12203236_SNP [dm3] 2L_12203236_SNP [dm6]	C	T	3.667e^-4	0.879	INTRON aret
3L	5471371	3L_5471371_SNP [dm3] 3L_5478271_SNP [dm6]	C	T	3.668e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	10570833	3L_10570833_SNP [dm3] 3L_10577733_SNP [dm6]	G	T	3.677e^-4	0.879	INTRON A2bp1
2L	18239300	2L_18239300_SNP [dm3] 2L_18239300_SNP [dm6]	T	A	3.678e^-4	0.879	INTRON CG42750
2L	13542173	2L_13542173_SNP [dm3] 2L_13542173_SNP [dm6]	T	C	3.679e^-4	0.879	UPSTREAM CG16853 DOWNSTREAM CG16852 INTRON B4 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	17537536	3R_17537536_SNP [dm3] 3R_21711814_SNP [dm6]	C	T	3.691e^-4	0.879	INTRON CG31176
3R	11513310	3R_11513310_SNP [dm3] 3R_15687588_SNP [dm6]	C	A	3.695e^-4	0.879	SYNONYMOUS_CODING pxb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19490104	2R_19490104_SNP [dm3] 2R_23602581_SNP [dm6]	T	A	3.703e^-4	0.879	UPSTREAM CG5398 & 3 others INTERGENIC
3R	18812123	3R_18812123_SNP [dm3] 3R_22986401_SNP [dm6]	G	A	3.708e^-4	0.879	SYNONYMOUS_CODING Nha2 UPSTREAM Or94a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	594721	2R_594721_SNP [dm3] 2R_4707216_SNP [dm6]	A	G	3.713e^-4	0.879	INTRON Nipped-B	transposable element FlyBase
3R	14718685	3R_14718685_SNP [dm3] 3R_18892963_SNP [dm6]	C	A	3.714e^-4	0.879	INTERGENIC
2R	5646373	2R_5646373_SNP [dm3] 2R_9758868_SNP [dm6]	T	A	3.715e^-4	0.879	UPSTREAM CG1690 INTRON trpl
3L	4923013	3L_4923013_SNP [dm3] 3L_4923013_SNP [dm6]	A	G	3.716e^-4	0.879	INTERGENIC
2L	7178538	2L_7178538_SNP [dm3] 2L_7178538_SNP [dm6]	A	C	3.718e^-4	0.879	UPSTREAM CR44613 INTERGENIC
3L	7328329	3L_7328329_SNP [dm3] 3L_7335229_SNP [dm6]	C	G	3.725e^-4	0.879	UPSTREAM CG43780 & 1 other DOWNSTREAM eco INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	19209855	2R_19209855_SNP [dm3] 2R_23322332_SNP [dm6]	A	T	3.727e^-4	0.879	SYNONYMOUS_CODING CG30416
2R	19209858	2R_19209858_SNP [dm3] 2R_23322335_SNP [dm6]	A	C	3.732e^-4	0.879	SYNONYMOUS_CODING CG30416
X	11173981	X_11173981_SNP [dm3] X_11279948_SNP [dm6]	T	A	3.753e^-4	0.88	INTRON CG44422
3L	5181577	3L_5181577_DEL [dm3] 3L_5188477_DEL [dm6]	AACAT	A	3.757e^-4	0.88	INTRON shep	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	16455048	3L_16455048_SNP [dm3] 3L_16461948_SNP [dm6]	A	C	3.760e^-4	0.88	INTRON CG33158	TF binding site mE1_TFBS_inv
3L	16455057	3L_16455057_SNP [dm3] 3L_16461957_SNP [dm6]	G	A	3.760e^-4	0.88	INTRON CG33158	TF binding site mE1_TFBS_inv
2L	5880228	2L_5880228_SNP [dm3] 2L_5880228_SNP [dm6]	A	G	3.764e^-4	0.88	UPSTREAM rau INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7326655	3L_7326655_DEL [dm3] 3L_7333555_DEL [dm6]	CG	C	3.771e^-4	0.88	UTR_3_PRIME CG43781 & 1 other DOWNSTREAM mus312 & 1 other
2L	6184606	2L_6184606_SNP [dm3] 2L_6184606_SNP [dm6]	C	T	3.771e^-4	0.88	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	7474205	X_7474205_SNP [dm3] X_7580172_SNP [dm6]	G	A	3.773e^-4	0.88	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	18255576	2L_18255576_INS [dm3] 2L_18255576_INS [dm6]	G	GAG	3.787e^-4	0.882	UPSTREAM CR43408 INTRON CG42750	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7329052	3L_7329052_SNP [dm3] 3L_7335952_SNP [dm6]	T	C	3.806e^-4	0.882	SYNONYMOUS_CODING eco UPSTREAM CG43780 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	25378704	3R_25378704_SNP [dm3] 3R_29552982_SNP [dm6]	G	A	3.812e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	20701309	3L_20701309_SNP [dm3] 3L_20708209_SNP [dm6]	G	A	3.819e^-4	0.882	INTERGENIC	regulatory region REDfly_CRMs
2R	2809940	2R_2809940_SNP [dm3] 2R_6922435_SNP [dm6]	T	A	3.828e^-4	0.882	UTR_3_PRIME CG30158 UPSTREAM CG3358
2R	2838932	2R_2838932_SNP [dm3] 2R_6951427_SNP [dm6]	T	C	3.837e^-4	0.882	SYNONYMOUS_CODING ppk25 INTRON mim & 1 other
2L	6495153	2L_6495153_SNP [dm3] 2L_6495153_SNP [dm6]	G	T	3.856e^-4	0.882	UPSTREAM CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad
2L	3239182	2L_3239182_SNP [dm3] 2L_3239182_SNP [dm6]	A	T	3.867e^-4	0.882	INTERGENIC
3R	25433386	3R_25433386_SNP [dm3] 3R_29607664_SNP [dm6]	A	T	3.870e^-4	0.882	UPSTREAM Diedel2 INTRON alph
3L	12898069	3L_12898069_SNP [dm3] 3L_12904969_SNP [dm6]	G	A	3.874e^-4	0.882	INTERGENIC
3R	27126397	3R_27126397_DEL [dm3] 3R_31300675_DEL [dm6]	ATA	A	3.877e^-4	0.882	INTERGENIC
3R	22661206	3R_22661206_SNP [dm3] 3R_26835484_SNP [dm6]	G	A	3.877e^-4	0.882	INTRON Tl
X	16910551	X_16910551_DEL [dm3] X_17016518_DEL [dm6]	GT	A	3.879e^-4	0.882	INTRON CG45002
2R	11357340	2R_11357340_SNP [dm3] 2R_15469835_SNP [dm6]	A	G	3.879e^-4	0.882	UTR_3_PRIME CG43729
3L	10646574	3L_10646574_SNP [dm3] 3L_10653474_SNP [dm6]	T	C	3.881e^-4	0.882	INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10963284	2R_10963284_SNP [dm3] 2R_15075779_SNP [dm6]	C	G	3.893e^-4	0.882	INTERGENIC
2R	19063830	2R_19063830_SNP [dm3] 2R_23176307_SNP [dm6]	C	T	3.906e^-4	0.882	INTRON CG34371
X	7063624	X_7063624_SNP [dm3] X_7169591_SNP [dm6]	T	A	3.910e^-4	0.882	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12110987	2L_12110987_SNP [dm3] 2L_12110987_SNP [dm6]	A	T	3.911e^-4	0.882	UPSTREAM Phae2 DOWNSTREAM Phae1 INTERGENIC
3R	23632023	3R_23632023_DEL [dm3] 3R_27806301_DEL [dm6]	GGTTTCCTGCGCTGCTG...	G	3.914e^-4	0.882	INTRON CG34353
3R	19354748	3R_19354748_SNP [dm3] 3R_23529026_SNP [dm6]	T	A	3.917e^-4	0.882	UPSTREAM CG10175 INTRON CG10175	TF binding site mE1_TFBS_cad
2R	12324148	2R_12324148_SNP [dm3] 2R_16436643_SNP [dm6]	G	A	3.925e^-4	0.882	UPSTREAM CG7848 INTERGENIC
2R	12324182	2R_12324182_SNP [dm3] 2R_16436677_SNP [dm6]	G	A	3.925e^-4	0.882	UPSTREAM CG7848 INTERGENIC
3L	11277648	3L_11277648_SNP [dm3] 3L_11284548_SNP [dm6]	C	T	3.930e^-4	0.882	UPSTREAM CR45404 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	23637597	3R_23637597_SNP [dm3] 3R_27811875_SNP [dm6]	A	G	3.931e^-4	0.882	INTRON CG34353
2R	4091112	2R_4091112_SNP [dm3] 2R_8203607_SNP [dm6]	G	A	3.934e^-4	0.882	INTRON LRP1
3R	23522392	3R_23522392_SNP [dm3] 3R_27696670_SNP [dm6]	G	A	3.943e^-4	0.882	UTR_3_PRIME ALiX DOWNSTREAM CG43320
X	7542849	X_7542849_SNP [dm3] X_7648816_SNP [dm6]	A	C	3.945e^-4	0.882	INTRON ct
3L	5680292	3L_5680292_SNP [dm3] 3L_5687192_SNP [dm6]	G	A	3.946e^-4	0.882	INTRON sif	TF binding site mE1_TFBS_chinmo
3R	17956548	3R_17956548_SNP [dm3] 3R_22130826_SNP [dm6]	C	A	3.953e^-4	0.882	INTRON CG42390
3R	17956552	3R_17956552_SNP [dm3] 3R_22130830_SNP [dm6]	C	T	3.953e^-4	0.882	INTRON CG42390
3R	17956554	3R_17956554_SNP [dm3] 3R_22130832_SNP [dm6]	A	T	3.953e^-4	0.882	INTRON CG42390
3R	15062462	3R_15062462_SNP [dm3] 3R_19236740_SNP [dm6]	C	A	3.958e^-4	0.882	INTRON unc79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26604210	3R_26604210_SNP [dm3] 3R_30778488_SNP [dm6]	A	G	3.969e^-4	0.882	INTRON zfh1
3R	26604212	3R_26604212_SNP [dm3] 3R_30778490_SNP [dm6]	A	G	3.969e^-4	0.882	INTRON zfh1
3R	27061050	3R_27061050_SNP [dm3] 3R_31235328_SNP [dm6]	G	T	3.970e^-4	0.882	UTR_5_PRIME CG15564 DOWNSTREAM qless
X	5527594	X_5527594_SNP [dm3] X_5633561_SNP [dm6]	A	C	3.973e^-4	0.882	INTRON CG42492	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	18873051	2R_18873051_SNP [dm3] 2R_22985528_SNP [dm6]	T	C	3.973e^-4	0.882	UTR_3_PRIME CG9897 UPSTREAM mir-4939 & 1 other INTRON CR42742 & 1 other
3L	15330540	3L_15330540_SNP [dm3] 3L_15337440_SNP [dm6]	T	C	3.976e^-4	0.882	SYNONYMOUS_CODING Toll-6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1347497	2L_1347497_SNP [dm3] 2L_1347497_SNP [dm6]	A	T	3.980e^-4	0.882	INTERGENIC
X	17171228	X_17171228_SNP [dm3] X_17277195_SNP [dm6]	G	A	3.983e^-4	0.882	INTRON f
3L	4519897	3L_4519897_INS [dm3] 3L_4519897_INS [dm6]	G	GG	3.984e^-4	0.882	INTRON Tie
2R	8179535	2R_8179535_SNP [dm3] 2R_12292030_SNP [dm6]	A	G	3.996e^-4	0.882	INTRON CG42700
3R	23685767	3R_23685767_SNP [dm3] 3R_27860045_SNP [dm6]	A	G	4.001e^-4	0.882	INTRON CG34353
3R	19622360	3R_19622360_SNP [dm3] 3R_23796638_SNP [dm6]	C	A	4.007e^-4	0.882	INTRON mbc	TF binding site mE1_TFBS_sens
2R	974106	2R_974106_DEL [dm3] 2R_5086601_DEL [dm6]	AATAACCA	A	4.013e^-4	0.882	INTERGENIC
3L	7328623	3L_7328623_SNP [dm3] 3L_7335523_SNP [dm6]	A	C	4.028e^-4	0.882	UTR_3_PRIME eco UPSTREAM CG43780 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	22550105	3R_22550105_SNP [dm3] 3R_26724383_SNP [dm6]	A	G	4.034e^-4	0.882	SYNONYMOUS_CODING CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8899879	2R_8899879_SNP [dm3] 2R_13012374_SNP [dm6]	G	A	4.034e^-4	0.882	INTERGENIC
2R	7719260	2R_7719260_SNP [dm3] 2R_11831755_SNP [dm6]	G	T	4.034e^-4	0.882	INTRON Sobp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16331233	2R_16331233_SNP [dm3] 2R_20443728_SNP [dm6]	C	T	4.035e^-4	0.882	INTRON CG12484	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9685654	X_9685654_SNP [dm3] X_9791621_SNP [dm6]	T	C	4.035e^-4	0.882	INTRON CG32698
3R	25541692	3R_25541692_SNP [dm3] 3R_29715970_SNP [dm6]	T	C	4.038e^-4	0.882	UPSTREAM Dup99B DOWNSTREAM Obp99d & 1 other INTERGENIC	TF binding site mE1_TFBS_zfh1
2R	11345407	2R_11345407_SNP [dm3] 2R_15457902_SNP [dm6]	C	T	4.038e^-4	0.882	SYNONYMOUS_CODING CG43729 INTRON CG43729
X	13185949	X_13185949_SNP [dm3] X_13291916_SNP [dm6]	G	A	4.058e^-4	0.883	SYNONYMOUS_CODING CG15744	TF binding site mE1_TFBS_chinmo
X	3962282	X_3962282_SNP [dm3] X_4068249_SNP [dm6]	T	A	4.058e^-4	0.883	INTERGENIC
3L	9679705	3L_9679705_SNP [dm3] 3L_9686605_SNP [dm6]	A	C	4.066e^-4	0.883	DOWNSTREAM CG16719 INTRON CG6767
3L	18755805	3L_18755805_SNP [dm3] 3L_18762705_SNP [dm6]	A	T	4.067e^-4	0.883	INTRON ftz-f1
3L	10820089	3L_10820089_SNP [dm3] 3L_10826989_SNP [dm6]	C	T	4.074e^-4	0.883	INTERGENIC
2R	13751887	2R_13751887_SNP [dm3] 2R_17864382_SNP [dm6]	A	G	4.075e^-4	0.883	SYNONYMOUS_CODING thr	TF binding site BDTNP1_TFBS_z
3L	15330591	3L_15330591_SNP [dm3] 3L_15337491_SNP [dm6]	G	A	4.076e^-4	0.883	SYNONYMOUS_CODING Toll-6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1231425	2L_1231425_SNP [dm3] 2L_1231425_SNP [dm6]	A	G	4.083e^-4	0.883	INTERGENIC
3L	16257732	3L_16257732_SNP [dm3] 3L_16264632_SNP [dm6]	A	T	4.087e^-4	0.883	UPSTREAM CG13069 DOWNSTREAM CG13051 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5718610	X_5718610_SNP [dm3] X_5824577_SNP [dm6]	T	C	4.102e^-4	0.884	INTRON CG15765	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18692941	3R_18692941_SNP [dm3] 3R_22867219_SNP [dm6]	G	A	4.104e^-4	0.884	INTERGENIC	TF binding site mE1_TFBS_HSA
X	14911909	X_14911909_SNP [dm3] X_15017876_SNP [dm6]	T	C	4.105e^-4	0.884	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2L	1690944	2L_1690944_SNP [dm3] 2L_1690944_SNP [dm6]	A	G	4.112e^-4	0.884	INTRON chinmo
2L	11796691	2L_11796691_SNP [dm3] 2L_11796691_SNP [dm6]	A	T	4.121e^-4	0.884	UTR_3_PRIME crol	TF binding site mE1_TFBS_cad
3R	24335997	3R_24335997_SNP [dm3] 3R_28510275_SNP [dm6]	C	A	4.126e^-4	0.884	SYNONYMOUS_CODING Dhc98D	TF binding site mE1_TFBS_cad
3L	3293793	3L_3293793_SNP [dm3] 3L_3293793_SNP [dm6]	C	G	4.131e^-4	0.884	UPSTREAM CG12009 INTRON CG12009
2R	16330796	2R_16330796_SNP [dm3] 2R_20443291_SNP [dm6]	C	T	4.131e^-4	0.884	INTRON CG12484	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2104994	3L_2104994_SNP [dm3] 3L_2104994_SNP [dm6]	T	C	4.143e^-4	0.886	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_chinmo
2L	15063141	2L_15063141_SNP [dm3] 2L_15063141_SNP [dm6]	G	A	4.162e^-4	0.886	UTR_3_PRIME vig INTRON vas
X	4792954	X_4792954_SNP [dm3] X_4898921_SNP [dm6]	G	T	4.162e^-4	0.886	INTRON CG42594
2L	11590994	2L_11590994_SNP [dm3] 2L_11590994_SNP [dm6]	G	C	4.171e^-4	0.886	DOWNSTREAM Acp33A INTRON kek2
3R	6979610	3R_6979610_INS [dm3] 3R_11153888_INS [dm6]	T	TTTATATATTGTAGATAT...	4.172e^-4	0.886	UPSTREAM Ugt86Dc & 1 other INTERGENIC
3R	19733886	3R_19733886_SNP [dm3] 3R_23908164_SNP [dm6]	A	G	4.177e^-4	0.886	INTRON sba
2R	9266598	2R_9266598_SNP [dm3] 2R_13379093_SNP [dm6]	C	T	4.180e^-4	0.886	INTERGENIC
3R	23637432	3R_23637432_SNP [dm3] 3R_27811710_SNP [dm6]	C	A	4.185e^-4	0.886	INTRON CG34353
3R	23637600	3R_23637600_SNP [dm3] 3R_27811878_SNP [dm6]	A	G	4.185e^-4	0.886	INTRON CG34353
3L	10440243	3L_10440243_SNP [dm3] 3L_10447143_SNP [dm6]	C	G	4.188e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	12727091	3R_12727091_SNP [dm3] 3R_16901369_SNP [dm6]	A	C	4.194e^-4	0.886	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	6019453	X_6019453_SNP [dm3] X_6125420_SNP [dm6]	T	C	4.199e^-4	0.886	INTRON Ca-alpha1T
3R	24175962	3R_24175962_SNP [dm3] 3R_28350240_SNP [dm6]	C	A	4.200e^-4	0.886	INTERGENIC
3R	23522336	3R_23522336_SNP [dm3] 3R_27696614_SNP [dm6]	C	T	4.212e^-4	0.887	UTR_3_PRIME ALiX DOWNSTREAM CG43320
3R	24059448	3R_24059448_SNP [dm3] 3R_28233726_SNP [dm6]	C	A	4.221e^-4	0.888	INTRON CG34354
X	9066157	X_9066157_INS [dm3] X_9172124_INS [dm6]	T	TT	4.225e^-4	0.888	UTR_3_PRIME mei-P26 DOWNSTREAM mei-P26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	20265070	2R_20265070_SNP [dm3] 2R_24377547_SNP [dm6]	G	C	4.246e^-4	0.889	UPSTREAM CG13578 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	17737259	3R_17737259_SNP [dm3] 3R_21911537_SNP [dm6]	C	A	4.251e^-4	0.889	UPSTREAM CG6690 INTERGENIC
3L	12980452	3L_12980452_INS [dm3] 3L_12987352_INS [dm6]	C	CGTCATGTTA	4.257e^-4	0.889	INTERGENIC
3R	24425126	3R_24425126_SNP [dm3] 3R_28599404_SNP [dm6]	C	A	4.260e^-4	0.889	UPSTREAM Hrb98DE & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	500850	2L_500850_SNP [dm3] 2L_500850_SNP [dm6]	T	G	4.262e^-4	0.889	INTRON ush
2R	10661364	2R_10661364_SNP [dm3] 2R_14773859_SNP [dm6]	A	T	4.263e^-4	0.889	UTR_3_PRIME kn
2L	11637499	2L_11637499_SNP [dm3] 2L_11637499_SNP [dm6]	C	T	4.264e^-4	0.889	INTERGENIC
3R	24254559	3R_24254559_SNP [dm3] 3R_28428837_SNP [dm6]	A	G	4.278e^-4	0.891	INTRON beat-VI
2L	8345252	2L_8345252_SNP [dm3] 2L_8345252_SNP [dm6]	A	G	4.289e^-4	0.891	UPSTREAM CR45371 DOWNSTREAM CG14273 INTERGENIC
X	8375336	X_8375336_SNP [dm3] X_8481303_SNP [dm6]	A	T	4.296e^-4	0.891	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
2L	11018104	2L_11018104_SNP [dm3] 2L_11018104_SNP [dm6]	G	A	4.301e^-4	0.891	SYNONYMOUS_CODING CG14913 INTRON Samuel
2L	11018107	2L_11018107_SNP [dm3] 2L_11018107_SNP [dm6]	C	T	4.301e^-4	0.891	SYNONYMOUS_CODING CG14913 INTRON Samuel
2L	11018215	2L_11018215_SNP [dm3] 2L_11018215_SNP [dm6]	C	A	4.301e^-4	0.891	SYNONYMOUS_CODING CG14913 INTRON Samuel
3L	12258340	3L_12258340_SNP [dm3] 3L_12265240_SNP [dm6]	T	A	4.317e^-4	0.893	INTRON app	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21189594	3R_21189594_SNP [dm3] 3R_25363872_SNP [dm6]	T	A	4.322e^-4	0.893	INTRON Fur1
2R	6026890	2R_6026890_SNP [dm3] 2R_10139385_SNP [dm6]	C	T	4.336e^-4	0.895	START_GAINED Or46a UTR_5_PRIME Or46a DOWNSTREAM CG12917 EXON CR43467
2R	7437225	2R_7437225_SNP [dm3] 2R_11549720_SNP [dm6]	A	G	4.345e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	5480697	2L_5480697_SNP [dm3] 2L_5480697_SNP [dm6]	T	C	4.360e^-4	0.898	INTERGENIC	TF binding site mE1_TFBS_cad
2R	891773	2R_891773_SNP [dm3] 2R_5004268_SNP [dm6]	C	A	4.362e^-4	0.898	INTRON Ir41a	transposable element FlyBase
3L	6931335	3L_6931335_SNP [dm3] 3L_6938235_SNP [dm6]	A	G	4.370e^-4	0.898	DOWNSTREAM CR45414 & 1 other INTERGENIC
3R	23364642	3R_23364642_SNP [dm3] 3R_27538920_SNP [dm6]	G	C	4.383e^-4	0.899	EXON CR44288
3R	23364655	3R_23364655_SNP [dm3] 3R_27538933_SNP [dm6]	G	A	4.383e^-4	0.899	EXON CR44288
3R	19805682	3R_19805682_SNP [dm3] 3R_23979960_SNP [dm6]	A	T	4.395e^-4	0.9	INTRON CG31140
2L	11423720	2L_11423720_SNP [dm3] 2L_11423720_SNP [dm6]	A	T	4.401e^-4	0.9	INTERGENIC
3R	3898485	3R_3898485_SNP [dm3] 3R_8072763_SNP [dm6]	A	T	4.411e^-4	0.9	INTRON mAChR-B	TF binding site BDTNP1_TFBS_dl
2L	15387678	2L_15387678_SNP [dm3] 2L_15387678_SNP [dm6]	T	C	4.412e^-4	0.9	INTERGENIC
3R	16324719	3R_16324719_SNP [dm3] 3R_20498997_SNP [dm6]	G	A	4.412e^-4	0.9	DOWNSTREAM Dic2 INTERGENIC
3R	8693448	3R_8693448_SNP [dm3] 3R_12867726_SNP [dm6]	A	G	4.415e^-4	0.9	INTERGENIC
3R	10679083	3R_10679083_SNP [dm3] 3R_14853361_SNP [dm6]	C	T	4.433e^-4	0.902	INTRON btsz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	8176240	X_8176240_SNP [dm3] X_8282207_SNP [dm6]	A	T	4.444e^-4	0.903	UTR_3_PRIME nAChRalpha3 DOWNSTREAM nAChRalpha3
3R	24823578	3R_24823578_SNP [dm3] 3R_28997856_SNP [dm6]	G	A	4.453e^-4	0.903	INTRON wat
2L	10536228	2L_10536228_SNP [dm3] 2L_10536228_SNP [dm6]	C	T	4.462e^-4	0.903	SYNONYMOUS_CODING CG18302
X	17171224	X_17171224_SNP [dm3] X_17277191_SNP [dm6]	C	T	4.470e^-4	0.903	INTRON f
2L	10536458	2L_10536458_SNP [dm3] 2L_10536458_SNP [dm6]	C	T	4.475e^-4	0.903	UTR_3_PRIME CG18302
2R	485710	2R_485710_SNP [dm3] 2R_4598205_SNP [dm6]	T	C	4.477e^-4	0.903	INTRON p120ctn	transposable element FlyBase
X	7421878	X_7421878_SNP [dm3] X_7527845_SNP [dm6]	G	A	4.482e^-4	0.903	UPSTREAM CG43138 INTRON CG32719
2R	8941442	2R_8941442_SNP [dm3] 2R_13053937_SNP [dm6]	T	C	4.485e^-4	0.903	INTERGENIC
2L	7205866	2L_7205866_SNP [dm3] 2L_7205866_SNP [dm6]	A	T	4.485e^-4	0.903	UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
X	12250333	X_12250333_SNP [dm3] X_12356300_SNP [dm6]	C	A	4.486e^-4	0.903	INTERGENIC
3R	19806505	3R_19806505_SNP [dm3] 3R_23980783_SNP [dm6]	G	C	4.504e^-4	0.906	NON_SYNONYMOUS_CODING CG31140 UTR_3_PRIME CG31140 INTRON CG31140
2R	9154533	2R_9154533_INS [dm3] 2R_13267028_INS [dm6]	T	TT	4.552e^-4	0.912	DOWNSTREAM CG42319 & 1 other INTERGENIC
2L	12166481	2L_12166481_SNP [dm3] 2L_12166481_SNP [dm6]	G	A	4.555e^-4	0.912	SYNONYMOUS_CODING ZnT33D UTR_3_PRIME ZnT33D INTRON CG31760
2L	12166495	2L_12166495_SNP [dm3] 2L_12166495_SNP [dm6]	A	G	4.555e^-4	0.912	NON_SYNONYMOUS_CODING ZnT33D UTR_3_PRIME ZnT33D INTRON CG31760
3R	25143140	3R_25143140_SNP [dm3] 3R_29317418_SNP [dm6]	G	A	4.560e^-4	0.912	SYNONYMOUS_CODING Cnx99A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12850437	X_12850437_SNP [dm3] X_12956404_SNP [dm6]	G	A	4.560e^-4	0.912	INTRON hec
3R	13134953	3R_13134953_SNP [dm3] 3R_17309231_SNP [dm6]	A	G	4.587e^-4	0.912	INTERGENIC
3L	14910168	3L_14910168_SNP [dm3] 3L_14917068_SNP [dm6]	T	C	4.591e^-4	0.912	INTRON DCX-EMAP
3L	2149095	3L_2149095_SNP [dm3] 3L_2149095_SNP [dm6]	G	T	4.593e^-4	0.912	INTRON zormin
3L	4516583	3L_4516583_SNP [dm3] 3L_4516583_SNP [dm6]	C	A	4.594e^-4	0.912	INTRON Tie	TF binding site mE1_TFBS_inv
2L	17067199	2L_17067199_SNP [dm3] 2L_17067199_SNP [dm6]	C	G	4.596e^-4	0.912	INTERGENIC
3L	2771834	3L_2771834_SNP [dm3] 3L_2771834_SNP [dm6]	A	T	4.598e^-4	0.912	UTR_5_PRIME CG9977 DOWNSTREAM CG12093	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	1022280	3L_1022280_DEL [dm3] 3L_1022280_DEL [dm6]	TTCCCCTTTTT...	T	4.601e^-4	0.912	INTRON trio
3L	14051950	3L_14051950_SNP [dm3] 3L_14058850_SNP [dm6]	C	G	4.605e^-4	0.912	INTRON CG32138
2L	14056405	2L_14056405_SNP [dm3] 2L_14056405_SNP [dm6]	T	C	4.605e^-4	0.912	INTRON nAChRalpha5
2L	17121742	2L_17121742_INS [dm3] 2L_17121742_INS [dm6]	A	AA	4.620e^-4	0.914	INTERGENIC
2R	18995272	2R_18995272_SNP [dm3] 2R_23107749_SNP [dm6]	T	A	4.621e^-4	0.914	INTERGENIC
3L	7134834	3L_7134834_SNP [dm3] 3L_7141734_SNP [dm6]	T	C	4.633e^-4	0.915	SYNONYMOUS_CODING melt
3R	21293079	3R_21293079_SNP [dm3] 3R_25467357_SNP [dm6]	A	T	4.647e^-4	0.916	INTRON Fur1	TF binding site BDTNP1_TFBS_dl
3L	7328876	3L_7328876_SNP [dm3] 3L_7335776_SNP [dm6]	T	C	4.652e^-4	0.916	SYNONYMOUS_CODING eco UPSTREAM CG43780 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13668491	3R_13668491_SNP [dm3] 3R_17842769_SNP [dm6]	C	T	4.658e^-4	0.916	INTRON tinc
3L	18698580	3L_18698580_SNP [dm3] 3L_18705480_SNP [dm6]	T	A	4.659e^-4	0.916	INTERGENIC
2R	16068949	2R_16068949_SNP [dm3] 2R_20181444_SNP [dm6]	G	C	4.687e^-4	0.92	INTERGENIC
2L	12110714	2L_12110714_SNP [dm3] 2L_12110714_SNP [dm6]	T	A	4.697e^-4	0.92	UPSTREAM Phae2 DOWNSTREAM Phae1 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	12898084	3L_12898084_SNP [dm3] 3L_12904984_SNP [dm6]	G	T	4.708e^-4	0.92	INTERGENIC
2L	9883973	2L_9883973_INS [dm3] 2L_9883973_INS [dm6]	A	AAA	4.711e^-4	0.92	INTRON nAChRalpha6
2L	16246504	2L_16246504_SNP [dm3] 2L_16246504_SNP [dm6]	A	T	4.725e^-4	0.92	UTR_3_PRIME PRL-1 DOWNSTREAM CG42818
2R	991930	2R_991930_SNP [dm3] 2R_5104425_SNP [dm6]	G	T	4.728e^-4	0.92	INTERGENIC	transposable element FlyBase
3L	17417256	3L_17417256_SNP [dm3] 3L_17424156_SNP [dm6]	G	A	4.730e^-4	0.92	SPLICE_SITE_REGION Sec3 INTRON Sec3	TF binding site mE1_TFBS_sens
3R	22088780	3R_22088780_SNP [dm3] 3R_26263058_SNP [dm6]	C	T	4.733e^-4	0.92	INTRON CG6154
2L	6512023	2L_6512023_SNP [dm3] 2L_6512023_SNP [dm6]	C	T	4.743e^-4	0.92	INTRON CG31637
2L	15354580	2L_15354580_SNP [dm3] 2L_15354580_SNP [dm6]	T	C	4.749e^-4	0.92	INTERGENIC
3R	15875516	3R_15875516_SNP [dm3] 3R_20049794_SNP [dm6]	A	G	4.750e^-4	0.92	UTR_5_PRIME CG17193
3L	1395504	3L_1395504_SNP [dm3] 3L_1395504_SNP [dm6]	C	A	4.753e^-4	0.92	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14822636	3R_14822636_INS [dm3] 3R_18996914_INS [dm6]	T	TT	4.762e^-4	0.92	INTRON gukh	TF binding site mE1_TFBS_cad
3L	3295341	3L_3295341_SNP [dm3] 3L_3295341_SNP [dm6]	C	T	4.764e^-4	0.92	INTRON CG12009
3R	16863351	3R_16863351_SNP [dm3] 3R_21037629_SNP [dm6]	A	G	4.765e^-4	0.92	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad
3L	15159853	3L_15159853_SNP [dm3] 3L_15166753_SNP [dm6]	A	C	4.765e^-4	0.92	INTERGENIC
3R	19460696	3R_19460696_SNP [dm3] 3R_23634974_SNP [dm6]	C	T	4.766e^-4	0.92	INTRON CG31145
2R	995324	2R_995324_SNP [dm3] 2R_5107819_SNP [dm6]	G	T	4.771e^-4	0.92	INTERGENIC	transposable element FlyBase
2L	16963473	2L_16963473_SNP [dm3] 2L_16963473_SNP [dm6]	G	T	4.773e^-4	0.92	INTERGENIC
3L	12517301	3L_12517301_INS [dm3] 3L_12524201_INS [dm6]	G	GG	4.781e^-4	0.92	UPSTREAM ver & 1 other DOWNSTREAM eIF-2beta INTRON ver	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	14766481	3L_14766481_SNP [dm3] 3L_14773381_SNP [dm6]	G	A	4.792e^-4	0.92	SYNONYMOUS_CODING mop	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14002212	3L_14002212_SNP [dm3] 3L_14009112_SNP [dm6]	T	C	4.794e^-4	0.92	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23853216	3R_23853216_SNP [dm3] 3R_28027494_SNP [dm6]	A	G	4.797e^-4	0.92	INTRON CG34362
X	13964618	X_13964618_SNP [dm3] X_14070585_SNP [dm6]	C	A	4.803e^-4	0.92	UPSTREAM tRNA:S474:12Eh INTERGENIC
3L	1416279	3L_1416279_SNP [dm3] 3L_1416279_SNP [dm6]	C	T	4.807e^-4	0.92	UTR_5_PRIME FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
X	2587037	X_2587037_SNP [dm3] X_2693004_SNP [dm6]	G	A	4.810e^-4	0.92	SYNONYMOUS_CODING CG2650 DOWNSTREAM per
2R	14586398	2R_14586398_SNP [dm3] 2R_18698893_SNP [dm6]	A	T	4.815e^-4	0.92	INTRON Sik3
2L	6595297	2L_6595297_SNP [dm3] 2L_6595297_SNP [dm6]	G	A	4.815e^-4	0.92	INTRON CG11319	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2156855	3L_2156855_SNP [dm3] 3L_2156855_SNP [dm6]	T	C	4.827e^-4	0.92	SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_cad
3R	6972994	3R_6972994_SNP [dm3] 3R_11147272_SNP [dm6]	C	T	4.828e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7209233	2L_7209233_SNP [dm3] 2L_7209233_SNP [dm6]	T	G	4.829e^-4	0.92	INTRON CG13784
2R	14721759	2R_14721759_SNP [dm3] 2R_18834254_SNP [dm6]	C	G	4.853e^-4	0.92	INTRON CG15098
2R	602438	2R_602438_SNP [dm3] 2R_4714933_SNP [dm6]	C	T	4.861e^-4	0.92	INTRON Nipped-B
3R	17642311	3R_17642311_SNP [dm3] 3R_21816589_SNP [dm6]	C	G	4.870e^-4	0.92	INTRON CASK
3R	25443199	3R_25443199_SNP [dm3] 3R_29617477_SNP [dm6]	T	A	4.872e^-4	0.92	DOWNSTREAM alph INTERGENIC
3R	24568634	3R_24568634_SNP [dm3] 3R_28742912_SNP [dm6]	T	G	4.875e^-4	0.92	INTRON AstA-R2
X	8176242	X_8176242_INS [dm3] X_8282209_INS [dm6]	G	TGT	4.883e^-4	0.92	UTR_3_PRIME nAChRalpha3 DOWNSTREAM nAChRalpha3
2R	12166723	2R_12166723_SNP [dm3] 2R_16279218_SNP [dm6]	G	C	4.884e^-4	0.92	UPSTREAM cato & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	16973912	X_16973912_SNP [dm3] X_17079879_SNP [dm6]	G	A	4.891e^-4	0.92	UTR_3_PRIME CG4949 DOWNSTREAM CG8945
3R	11364553	3R_11364553_SNP [dm3] 3R_15538831_SNP [dm6]	T	C	4.896e^-4	0.92	NON_SYNONYMOUS_CODING CG18519	TF binding site mE1_TFBS_chinmo
2R	13803597	2R_13803597_SNP [dm3] 2R_17916092_SNP [dm6]	A	G	4.902e^-4	0.92	INTRON Elk
2L	5448723	2L_5448723_SNP [dm3] 2L_5448723_SNP [dm6]	G	A	4.909e^-4	0.92	INTERGENIC
2L	18891552	2L_18891552_SNP [dm3] 2L_18891552_SNP [dm6]	T	A	4.918e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	6151556	2L_6151556_SNP [dm3] 2L_6151556_SNP [dm6]	T	C	4.918e^-4	0.92	UPSTREAM Muc26B INTERGENIC
X	2923334	X_2923334_SNP [dm3] X_3029301_SNP [dm6]	C	T	4.919e^-4	0.92	INTRON kirre
X	9222926	X_9222926_SNP [dm3] X_9328893_SNP [dm6]	A	C	4.925e^-4	0.92	DOWNSTREAM CG34450 INTRON CG34449
X	9222927	X_9222927_SNP [dm3] X_9328894_SNP [dm6]	C	T	4.925e^-4	0.92	DOWNSTREAM CG34450 INTRON CG34449
X	9222932	X_9222932_SNP [dm3] X_9328899_SNP [dm6]	A	T	4.925e^-4	0.92	DOWNSTREAM CG34450 INTRON CG34449
X	9222935	X_9222935_INS [dm3] X_9328902_INS [dm6]	G	GTGTGCCAAT	4.925e^-4	0.92	DOWNSTREAM CG34450 INTRON CG34449
3R	10824757	3R_10824757_SNP [dm3] 3R_14999035_SNP [dm6]	T	A	4.958e^-4	0.92	INTERGENIC
3R	13233452	3R_13233452_SNP [dm3] 3R_17407730_SNP [dm6]	T	A	4.963e^-4	0.92	UPSTREAM CG17283 DOWNSTREAM CG42798 INTERGENIC
X	15415173	X_15415173_SNP [dm3] X_15521140_SNP [dm6]	A	G	4.966e^-4	0.92	INTRON Ac13E
3R	17956528	3R_17956528_SNP [dm3] 3R_22130806_SNP [dm6]	A	G	4.983e^-4	0.92	INTRON CG42390
3R	17956532	3R_17956532_SNP [dm3] 3R_22130810_SNP [dm6]	T	A	4.983e^-4	0.92	INTRON CG42390

By genomic position
Variant impact
Gene name

Microbiota_OTU017 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results