DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.525e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3634 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	3617483	2L_3617483_SNP [dm3] 2L_3617483_SNP [dm6]	A	T	8.253e^-9	0.015	EXON CR44310	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7768125	3L_7768125_INS [dm3] 3L_7775025_INS [dm6]	A	AA	1.915e^-8	0.015	INTRON Clk	regulatory region REDfly_CRMs
2L	14673008	2L_14673008_SNP [dm3] 2L_14673008_SNP [dm6]	T	C	2.495e^-8	0.015	INTRON osp
3L	15989963	3L_15989963_SNP [dm3] 3L_15996863_SNP [dm6]	T	C	3.930e^-8	0.018	INTRON CG5830
2R	14399164	2R_14399164_SNP [dm3] 2R_18511659_SNP [dm6]	C	G	9.888e^-8	0.035	INTERGENIC
X	7609515	X_7609515_SNP [dm3] X_7715482_SNP [dm6]	T	C	1.227e^-7	0.035	UPSTREAM CG15478 INTRON CG15478
2R	8773471	2R_8773471_DEL [dm3] 2R_12885966_DEL [dm6]	CGACCTAATTC...	C	1.342e^-7	0.035	INTRON vg	TF binding site BDTNP1_TFBS_dl
3R	4442768	3R_4442768_SNP [dm3] 3R_8617046_SNP [dm6]	C	T	1.488e^-7	0.035	INTRON 5-HT2B	TF binding site mE1_TFBS_inv
2L	14673011	2L_14673011_SNP [dm3] 2L_14673011_SNP [dm6]	C	T	1.901e^-7	0.039	INTRON osp
2L	14706263	2L_14706263_SNP [dm3] 2L_14706263_SNP [dm6]	G	A	2.328e^-7	0.041	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3L	20417121	3L_20417121_SNP [dm3] 3L_20424021_SNP [dm6]	A	C	2.881e^-7	0.041	NON_SYNONYMOUS_CODING zye DOWNSTREAM CG5282	TF binding site mE1_TFBS_cad
2R	8782385	2R_8782385_SNP [dm3] 2R_12894880_SNP [dm6]	T	C	2.968e^-7	0.041	INTRON vg	TF binding site BDTNP1_TFBS_dl
3L	8508655	3L_8508655_SNP [dm3] 3L_8515555_SNP [dm6]	G	C	3.001e^-7	0.041	SYNONYMOUS_CODING CG6765 UPSTREAM CG6683	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3615495	2L_3615495_SNP [dm3] 2L_3615495_SNP [dm6]	T	C	3.117e^-7	0.041	UPSTREAM CR44310 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8788232	2R_8788232_SNP [dm3] 2R_12900727_SNP [dm6]	G	A	3.437e^-7	0.043	INTERGENIC
3L	14800328	3L_14800328_DEL [dm3] 3L_14807228_DEL [dm6]	CC	C	4.034e^-7	0.047	INTRON CG17839	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8778729	2R_8778729_SNP [dm3] 2R_12891224_SNP [dm6]	A	G	4.448e^-7	0.047	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13569252	3R_13569252_SNP [dm3] 3R_17743530_SNP [dm6]	G	A	4.550e^-7	0.047	INTRON TyrRII	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14706269	2L_14706269_SNP [dm3] 2L_14706269_SNP [dm6]	A	C	4.912e^-7	0.048	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3L	20416307	3L_20416307_SNP [dm3] 3L_20423207_SNP [dm6]	C	A	5.623e^-7	0.052	NON_SYNONYMOUS_CODING zye	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	9389916	X_9389916_SNP [dm3] X_9495883_SNP [dm6]	A	G	5.889e^-7	0.052	UTR_5_PRIME mgl INTRON mgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	14706252	2L_14706252_SNP [dm3] 2L_14706252_SNP [dm6]	T	A	6.148e^-7	0.052	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3R	20848750	3R_20848750_SNP [dm3] 3R_25023028_SNP [dm6]	C	A	6.924e^-7	0.052	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
3L	15253928	3L_15253928_SNP [dm3] 3L_15260828_SNP [dm6]	G	A	6.932e^-7	0.052	INTERGENIC	TF binding site mE1_TFBS_cad
X	10143299	X_10143299_SNP [dm3] X_10249266_SNP [dm6]	G	C	7.214e^-7	0.052	INTRON Hk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14906853	3R_14906853_DEL [dm3] 3R_19081131_DEL [dm6]	TTCT	T	7.261e^-7	0.052	INTRON cdi
3L	12314795	3L_12314795_SNP [dm3] 3L_12321695_SNP [dm6]	T	A	7.964e^-7	0.052	INTERGENIC
3R	17450634	3R_17450634_SNP [dm3] 3R_21624912_SNP [dm6]	T	G	7.996e^-7	0.052	INTRON E2f	TF binding site mE1_TFBS_cad
2R	14399150	2R_14399150_SNP [dm3] 2R_18511645_SNP [dm6]	T	C	8.078e^-7	0.052	INTERGENIC
2L	3617439	2L_3617439_SNP [dm3] 2L_3617439_SNP [dm6]	A	G	8.443e^-7	0.052	EXON CR44310	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14694436	2L_14694436_SNP [dm3] 2L_14694436_SNP [dm6]	A	T	8.768e^-7	0.052	INTERGENIC
2L	15741236	2L_15741236_INS [dm3] 2L_15741236_INS [dm6]	A	ATA	9.648e^-7	0.052	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4222485	X_4222485_SNP [dm3] X_4328452_SNP [dm6]	A	C	1.038e^-6	0.052	NON_SYNONYMOUS_CODING CG12693 INTRON norpA	TF binding site BDTNP1_TFBS_twi
3L	6338299	3L_6338299_SNP [dm3] 3L_6345199_SNP [dm6]	C	T	1.050e^-6	0.052	INTRON CG13300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12300442	3L_12300442_SNP [dm3] 3L_12307342_SNP [dm6]	G	C	1.087e^-6	0.052	INTERGENIC
3L	19058997	3L_19058997_SNP [dm3] 3L_19065897_SNP [dm6]	A	T	1.091e^-6	0.052	UTR_3_PRIME CG6812 DOWNSTREAM Mkp3
3R	13411515	3R_13411515_SNP [dm3] 3R_17585793_SNP [dm6]	G	A	1.151e^-6	0.052	INTERGENIC
3R	13411516	3R_13411516_SNP [dm3] 3R_17585794_SNP [dm6]	T	G	1.151e^-6	0.052	INTERGENIC
3L	20412140	3L_20412140_SNP [dm3] 3L_20419040_SNP [dm6]	C	G	1.161e^-6	0.052	NON_SYNONYMOUS_CODING zye	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	20421612	3L_20421612_SNP [dm3] 3L_20428512_SNP [dm6]	A	G	1.161e^-6	0.052	SYNONYMOUS_CODING CG5262 UPSTREAM CG5274
3L	20421849	3L_20421849_SNP [dm3] 3L_20428749_SNP [dm6]	G	T	1.161e^-6	0.052	SYNONYMOUS_CODING CG5262
X	9389878	X_9389878_SNP [dm3] X_9495845_SNP [dm6]	G	A	1.201e^-6	0.052	UTR_5_PRIME mgl INTRON mgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	14681456	2L_14681456_SNP [dm3] 2L_14681456_SNP [dm6]	G	A	1.225e^-6	0.052	INTRON osp
3L	20424719	3L_20424719_SNP [dm3] 3L_20431619_SNP [dm6]	T	A	1.226e^-6	0.052	UPSTREAM Psn INTRON Las	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	16885963	3L_16885963_SNP [dm3] 3L_16892863_SNP [dm6]	C	A	1.246e^-6	0.052	INTRON Lmpt
2L	2315973	2L_2315973_SNP [dm3] 2L_2315973_SNP [dm6]	A	G	1.301e^-6	0.053	INTRON CG9967 & 1 other
2L	16820612	2L_16820612_SNP [dm3] 2L_16820612_SNP [dm6]	A	G	1.518e^-6	0.058	SYNONYMOUS_CODING mdy DOWNSTREAM Cas INTRON CG13280
3L	7766183	3L_7766183_SNP [dm3] 3L_7773083_SNP [dm6]	A	T	1.554e^-6	0.058	INTRON Clk	regulatory region REDfly_CRMs
3L	20416909	3L_20416909_SNP [dm3] 3L_20423809_SNP [dm6]	C	T	1.627e^-6	0.058	NON_SYNONYMOUS_CODING zye DOWNSTREAM CG5282	TF binding site mE1_TFBS_cad
3L	20419376	3L_20419376_SNP [dm3] 3L_20426276_SNP [dm6]	T	C	1.627e^-6	0.058	UTR_3_PRIME CG5274 UPSTREAM CG5282	TF binding site mE1_TFBS_chinmo
3L	20419434	3L_20419434_SNP [dm3] 3L_20426334_SNP [dm6]	T	A	1.627e^-6	0.058	UTR_3_PRIME CG5274 UPSTREAM CG5282	TF binding site mE1_TFBS_chinmo
3L	20420767	3L_20420767_SNP [dm3] 3L_20427667_SNP [dm6]	T	C	1.627e^-6	0.058	UPSTREAM CG5274 DOWNSTREAM CG5262 INTERGENIC	TF binding site BDTNP1_TFBS_Med
2R	8337493	2R_8337493_SNP [dm3] 2R_12449988_SNP [dm6]	A	T	1.673e^-6	0.058	INTRON Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20414535	3L_20414535_SNP [dm3] 3L_20421435_SNP [dm6]	T	C	1.693e^-6	0.058	SYNONYMOUS_CODING zye	TF binding site mE1_TFBS_cad
3L	7763828	3L_7763828_SNP [dm3] 3L_7770728_SNP [dm6]	C	T	1.740e^-6	0.059	INTRON Clk	regulatory region REDfly_CRMs
3L	5897346	3L_5897346_SNP [dm3] 3L_5904246_SNP [dm6]	C	T	1.889e^-6	0.063	UTR_3_PRIME CG10486 UPSTREAM CG32413
3L	11590842	3L_11590842_DEL [dm3] 3L_11597742_DEL [dm6]	TTTTTGATGACT...	T	2.078e^-6	0.068	INTRON CG7368
3R	10553699	3R_10553699_SNP [dm3] 3R_14727977_SNP [dm6]	G	T	2.310e^-6	0.074	INTRON CG7530
3L	12300369	3L_12300369_DEL [dm3] 3L_12307269_DEL [dm6]	GG	G	2.393e^-6	0.075	INTERGENIC
3L	13125081	3L_13125081_SNP [dm3] 3L_13131981_SNP [dm6]	G	A	2.517e^-6	0.078	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	12300456	3L_12300456_SNP [dm3] 3L_12307356_SNP [dm6]	T	G	2.661e^-6	0.078	INTERGENIC
2L	9547725	2L_9547725_SNP [dm3] 2L_9547725_SNP [dm6]	T	C	2.714e^-6	0.078	UTR_3_PRIME jp DOWNSTREAM jp & 1 other
2L	12542479	2L_12542479_SNP [dm3] 2L_12542479_SNP [dm6]	T	C	2.730e^-6	0.078	UPSTREAM CR42746 INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6009292	X_6009292_SNP [dm3] X_6115259_SNP [dm6]	T	C	2.800e^-6	0.078	INTRON Ca-alpha1T
3R	10287983	3R_10287983_SNP [dm3] 3R_14462261_SNP [dm6]	C	T	2.808e^-6	0.078	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8778785	2R_8778785_DEL [dm3] 2R_12891280_DEL [dm6]	AA	A	2.835e^-6	0.078	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11830572	X_11830572_SNP [dm3] X_11936539_SNP [dm6]	A	C	2.936e^-6	0.078	INTRON cac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19944608	3R_19944608_SNP [dm3] 3R_24118886_SNP [dm6]	T	C	2.966e^-6	0.078	UTR_5_PRIME Rootletin INTRON Rootletin
3L	1657831	3L_1657831_SNP [dm3] 3L_1657831_SNP [dm6]	G	C	2.982e^-6	0.078	SYNONYMOUS_CODING CG7971
2R	7043523	2R_7043523_SNP [dm3] 2R_11156018_SNP [dm6]	C	A	3.023e^-6	0.078	DOWNSTREAM CG13230 INTRON CG13229
3R	12840070	3R_12840070_INS [dm3] 3R_17014348_INS [dm6]	A	AAA	3.032e^-6	0.078	UPSTREAM Pxd INTERGENIC
3R	12840422	3R_12840422_SNP [dm3] 3R_17014700_SNP [dm6]	C	T	3.032e^-6	0.078	UTR_5_PRIME Pxd
3R	12846847	3R_12846847_SNP [dm3] 3R_17021125_SNP [dm6]	G	C	3.089e^-6	0.079	UPSTREAM AdSL INTRON Pxd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10096818	2R_10096818_SNP [dm3] 2R_14209313_SNP [dm6]	T	C	3.190e^-6	0.08	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	105174	3L_105174_SNP [dm3] 3L_105174_SNP [dm6]	C	T	3.286e^-6	0.082	INTERGENIC
X	8660776	X_8660776_SNP [dm3] X_8766743_SNP [dm6]	A	C	3.553e^-6	0.084	INTRON Lim1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7609923	3L_7609923_SNP [dm3] 3L_7616823_SNP [dm6]	C	G	3.563e^-6	0.084	INTRON CG33275
3L	13612493	3L_13612493_SNP [dm3] 3L_13619393_SNP [dm6]	A	T	3.599e^-6	0.084	INTRON bru-3
3L	7409318	3L_7409318_SNP [dm3] 3L_7416218_SNP [dm6]	A	T	3.643e^-6	0.084	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	12344202	2R_12344202_SNP [dm3] 2R_16456697_SNP [dm6]	T	C	3.648e^-6	0.084	INTERGENIC
3R	12840256	3R_12840256_SNP [dm3] 3R_17014534_SNP [dm6]	T	C	3.658e^-6	0.084	UPSTREAM Pxd INTERGENIC
3R	14351116	3R_14351116_SNP [dm3] 3R_18525394_SNP [dm6]	A	T	3.815e^-6	0.087	INTRON fru	TF binding site mE1_TFBS_inv
3L	7775681	3L_7775681_SNP [dm3] 3L_7782581_SNP [dm6]	C	T	3.946e^-6	0.088	INTRON CG32369	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13411505	3R_13411505_MNP [dm3] 3R_17585783_MNP [dm6]	TTC	CAA	4.214e^-6	0.091	INTERGENIC
2R	8808667	2R_8808667_SNP [dm3] 2R_12921162_SNP [dm6]	G	A	4.384e^-6	0.091	SYNONYMOUS_CODING NAT1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	20424569	3L_20424569_SNP [dm3] 3L_20431469_SNP [dm6]	G	A	4.387e^-6	0.091	SYNONYMOUS_CODING Las UPSTREAM CG5262 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	20425816	3L_20425816_SNP [dm3] 3L_20432716_SNP [dm6]	T	C	4.387e^-6	0.091	UPSTREAM Las INTRON Psn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	20426709	3L_20426709_SNP [dm3] 3L_20433609_SNP [dm6]	T	G	4.387e^-6	0.091	INTRON Psn
X	14571199	X_14571199_SNP [dm3] X_14677166_SNP [dm6]	T	C	4.407e^-6	0.091	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7520406	2L_7520406_SNP [dm3] 2L_7520406_SNP [dm6]	G	T	4.473e^-6	0.091	DOWNSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16817521	2L_16817521_SNP [dm3] 2L_16817521_SNP [dm6]	G	A	4.488e^-6	0.091	INTRON CG13280 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8650691	2L_8650691_SNP [dm3] 2L_8650691_SNP [dm6]	G	A	4.570e^-6	0.091	INTRON Sema-1a
3L	20856998	3L_20856998_SNP [dm3] 3L_20863898_SNP [dm6]	C	A	4.644e^-6	0.091	INTRON CG32432
3R	13569251	3R_13569251_SNP [dm3] 3R_17743529_SNP [dm6]	G	A	4.713e^-6	0.091	INTRON TyrRII	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13569300	3R_13569300_SNP [dm3] 3R_17743578_SNP [dm6]	C	T	4.713e^-6	0.091	INTRON TyrRII	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13569303	3R_13569303_SNP [dm3] 3R_17743581_SNP [dm6]	T	C	4.713e^-6	0.091	INTRON TyrRII	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7770156	2L_7770156_DEL [dm3] 2L_7770156_DEL [dm6]	CAAGCCCTT	C	5.080e^-6	0.096	INTRON CG7191
2R	18885976	2R_18885976_DEL [dm3] 2R_22998453_DEL [dm6]	AA	A	5.428e^-6	0.096	INTRON twi & 1 other
2L	9349017	2L_9349017_SNP [dm3] 2L_9349017_SNP [dm6]	T	C	5.428e^-6	0.096	UPSTREAM CG43350 EXON CR44802
2R	18318828	2R_18318828_SNP [dm3] 2R_22431323_SNP [dm6]	G	A	5.473e^-6	0.096	INTERGENIC
3L	20426580	3L_20426580_SNP [dm3] 3L_20433480_SNP [dm6]	C	A	5.623e^-6	0.096	SYNONYMOUS_CODING Psn	TF binding site mE1_TFBS_sens
2L	10898344	2L_10898344_SNP [dm3] 2L_10898344_SNP [dm6]	A	T	5.631e^-6	0.096	INTERGENIC
2L	10898347	2L_10898347_SNP [dm3] 2L_10898347_SNP [dm6]	T	A	5.631e^-6	0.096	INTERGENIC
2R	1384000	2R_1384000_INS [dm3] 2R_5496495_INS [dm6]	C	CTTC	5.670e^-6	0.096	UPSTREAM CG30438 & 1 other INTERGENIC
2L	9339896	2L_9339896_SNP [dm3] 2L_9339896_SNP [dm6]	A	T	5.679e^-6	0.096	SYNONYMOUS_CODING Eaat1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	11230772	3R_11230772_SNP [dm3] 3R_15405050_SNP [dm6]	G	C	5.756e^-6	0.096	SYNONYMOUS_CODING CG6125
X	5696301	X_5696301_INS [dm3] X_5802268_INS [dm6]	G	GACGAACGG	5.779e^-6	0.096	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9335768	2L_9335768_INS [dm3] 2L_9335768_INS [dm6]	TTTCT	CAGAAACA	5.797e^-6	0.096	INTRON Eaat1
2L	9335814	2L_9335814_SNP [dm3] 2L_9335814_SNP [dm6]	C	A	5.797e^-6	0.096	INTRON Eaat1
X	12380128	X_12380128_SNP [dm3] X_12486095_SNP [dm6]	C	T	5.802e^-6	0.096	UPSTREAM Cpr11A INTERGENIC
3R	12845580	3R_12845580_SNP [dm3] 3R_17019858_SNP [dm6]	G	A	5.859e^-6	0.096	SYNONYMOUS_CODING AdSL INTRON Pxd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16820654	2L_16820654_SNP [dm3] 2L_16820654_SNP [dm6]	C	T	5.898e^-6	0.096	SYNONYMOUS_CODING mdy DOWNSTREAM Cas INTRON CG13280
2L	16820664	2L_16820664_SNP [dm3] 2L_16820664_SNP [dm6]	C	T	5.898e^-6	0.096	SPLICE_SITE_REGION mdy DOWNSTREAM Cas INTRON CG13280 & 1 other
3L	8506931	3L_8506931_SNP [dm3] 3L_8513831_SNP [dm6]	T	A	5.899e^-6	0.096	DOWNSTREAM CG6683 & 1 other INTRON CG6765	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20426697	3L_20426697_SNP [dm3] 3L_20433597_SNP [dm6]	G	T	5.954e^-6	0.096	INTRON Psn
2L	14683331	2L_14683331_SNP [dm3] 2L_14683331_SNP [dm6]	C	G	6.011e^-6	0.096	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	3578045	2R_3578045_SNP [dm3] 2R_7690540_SNP [dm6]	T	G	6.092e^-6	0.097	INTRON CG1399
2R	20523249	2R_20523249_SNP [dm3] 2R_24635726_SNP [dm6]	C	T	6.220e^-6	0.098	INTRON CG13594
2L	4177520	2L_4177520_SNP [dm3] 2L_4177520_SNP [dm6]	T	G	6.257e^-6	0.098	INTERGENIC
3L	7050133	3L_7050133_SNP [dm3] 3L_7057033_SNP [dm6]	G	C	6.295e^-6	0.098	INTERGENIC
3L	13516099	3L_13516099_SNP [dm3] 3L_13522999_SNP [dm6]	C	T	6.557e^-6	0.1	UTR_3_PRIME bru-3
3L	12306040	3L_12306040_INS [dm3] 3L_12312940_INS [dm6]	T	TAAGGCT	6.591e^-6	0.1	DOWNSTREAM CG44355 INTERGENIC
2L	14704041	2L_14704041_SNP [dm3] 2L_14704041_SNP [dm6]	T	C	6.686e^-6	0.1	INTERGENIC
2L	6303013	2L_6303013_SNP [dm3] 2L_6303013_SNP [dm6]	A	T	6.786e^-6	0.1	INTRON Ddr
2L	17645939	2L_17645939_SNP [dm3] 2L_17645939_SNP [dm6]	A	G	6.800e^-6	0.1	INTERGENIC
2R	13027574	2R_13027574_SNP [dm3] 2R_17140069_SNP [dm6]	C	T	6.867e^-6	0.1	UPSTREAM CR44386 & 1 other DOWNSTREAM CG43107 & 1 other INTERGENIC
3L	1891958	3L_1891958_SNP [dm3] 3L_1891958_SNP [dm6]	C	G	6.907e^-6	0.1	DOWNSTREAM Tmhs INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	1891961	3L_1891961_SNP [dm3] 3L_1891961_SNP [dm6]	T	A	6.907e^-6	0.1	DOWNSTREAM Tmhs INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	1863969	2L_1863969_SNP [dm3] 2L_1863969_SNP [dm6]	A	G	6.998e^-6	0.1	INTRON CG31663
X	5196995	X_5196995_SNP [dm3] X_5302962_SNP [dm6]	C	A	7.013e^-6	0.1	DOWNSTREAM CG3323 & 1 other INTRON CG42749
2R	8290786	2R_8290786_INS [dm3] 2R_12403281_INS [dm6]	G	GG	7.069e^-6	0.1	INTRON Cpr49Ae	TF binding site BDTNP1_TFBS_ftz
2L	15554080	2L_15554080_SNP [dm3] 2L_15554080_SNP [dm6]	T	A	7.078e^-6	0.1	INTRON kek3
3R	12849976	3R_12849976_SNP [dm3] 3R_17024254_SNP [dm6]	A	G	7.242e^-6	0.101	INTRON Pxd	TF binding site mE1_TFBS_inv
2L	14683801	2L_14683801_SNP [dm3] 2L_14683801_SNP [dm6]	G	T	7.458e^-6	0.104	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8793296	2R_8793296_DEL [dm3] 2R_12905791_DEL [dm6]	CCACAAACGCC...	C	7.531e^-6	0.104	UPSTREAM CR44461 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	9342764	2L_9342764_SNP [dm3] 2L_9342764_SNP [dm6]	T	C	7.588e^-6	0.104	UPSTREAM CG3748 DOWNSTREAM Eaat1 INTERGENIC
2L	4043074	2L_4043074_SNP [dm3] 2L_4043074_SNP [dm6]	G	T	7.950e^-6	0.108	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10419082	2L_10419082_SNP [dm3] 2L_10419082_SNP [dm6]	C	A	7.987e^-6	0.108	UPSTREAM RfC3 DOWNSTREAM Klp31E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk
3R	8170409	3R_8170409_SNP [dm3] 3R_12344687_SNP [dm6]	T	C	8.234e^-6	0.11	INTERGENIC
3L	20420673	3L_20420673_SNP [dm3] 3L_20427573_SNP [dm6]	T	C	8.283e^-6	0.11	UTR_5_PRIME CG5274 DOWNSTREAM CG5262	TF binding site BDTNP1_TFBS_Med
2L	16820672	2L_16820672_SNP [dm3] 2L_16820672_SNP [dm6]	A	G	8.326e^-6	0.11	DOWNSTREAM Cas INTRON CG13280 & 1 other
2L	14625158	2L_14625158_SNP [dm3] 2L_14625158_SNP [dm6]	G	A	8.638e^-6	0.113	INTRON osp
2L	14624070	2L_14624070_SNP [dm3] 2L_14624070_SNP [dm6]	T	G	8.682e^-6	0.113	INTRON osp
3R	13535032	3R_13535032_SNP [dm3] 3R_17709310_SNP [dm6]	T	C	8.807e^-6	0.114	INTRON osa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	5249338	X_5249338_SNP [dm3] X_5355305_SNP [dm6]	A	T	8.948e^-6	0.114	INTRON SK
3R	12841077	3R_12841077_SNP [dm3] 3R_17015355_SNP [dm6]	G	A	9.104e^-6	0.114	INTRON Pxd
2R	14407396	2R_14407396_SNP [dm3] 2R_18519891_SNP [dm6]	T	C	9.157e^-6	0.114	INTRON CG43066	TF binding site mE1_TFBS_inv
3L	568915	3L_568915_DEL [dm3] 3L_568915_DEL [dm6]	CATTC	C	9.182e^-6	0.114	UPSTREAM hipk INTRON hipk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12609683	3L_12609683_SNP [dm3] 3L_12616583_SNP [dm6]	A	G	9.266e^-6	0.114	INTRON caup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	12609688	3L_12609688_SNP [dm3] 3L_12616588_SNP [dm6]	T	A	9.266e^-6	0.114	INTRON caup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	14628011	2L_14628011_SNP [dm3] 2L_14628011_SNP [dm6]	C	A	9.276e^-6	0.114	INTRON osp	TF binding site mE1_TFBS_HSA
3R	9526370	3R_9526370_SNP [dm3] 3R_13700648_SNP [dm6]	A	T	9.281e^-6	0.114	START_GAINED ninaB UTR_5_PRIME ninaB INTRON f-cup	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
2L	4197206	2L_4197206_SNP [dm3] 2L_4197206_SNP [dm6]	G	T	9.353e^-6	0.114	UTR_5_PRIME CG3714 INTRON CG3714	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3L	7609925	3L_7609925_MNP [dm3] 3L_7616825_MNP [dm6]	CTC	TAA	9.528e^-6	0.115	INTRON CG33275
2R	10383934	2R_10383934_SNP [dm3] 2R_14496429_SNP [dm6]	C	T	9.642e^-6	0.116	SYNONYMOUS_CODING L DOWNSTREAM Cpsf160	TF binding site mE1_TFBS_cad
3R	12847102	3R_12847102_SNP [dm3] 3R_17021380_SNP [dm6]	G	A	9.833e^-6	0.117	UPSTREAM AdSL INTRON Pxd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	16004268	X_16004268_SNP [dm3] X_16110235_SNP [dm6]	T	C	9.996e^-6	0.118	INTERGENIC
2L	10870236	2L_10870236_SNP [dm3] 2L_10870236_SNP [dm6]	T	A	1.024e^-5	0.119	UTR_5_PRIME CG12517 UPSTREAM CR45453	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10870238	2L_10870238_SNP [dm3] 2L_10870238_SNP [dm6]	A	G	1.024e^-5	0.119	UTR_5_PRIME CG12517 UPSTREAM CR45453	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	20422584	3L_20422584_SNP [dm3] 3L_20429484_SNP [dm6]	G	T	1.025e^-5	0.119	INTRON CG5262	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
2L	9345195	2L_9345195_SNP [dm3] 2L_9345195_SNP [dm6]	G	A	1.034e^-5	0.119	DOWNSTREAM CG3748 INTERGENIC
2L	19188200	2L_19188200_SNP [dm3] 2L_19188200_SNP [dm6]	G	T	1.036e^-5	0.119	SYNONYMOUS_CODING pigeon	TF binding site mE1_TFBS_cad
X	6009346	X_6009346_SNP [dm3] X_6115313_SNP [dm6]	G	A	1.058e^-5	0.119	INTRON Ca-alpha1T
2L	10419130	2L_10419130_SNP [dm3] 2L_10419130_SNP [dm6]	T	G	1.062e^-5	0.119	UPSTREAM RfC3 DOWNSTREAM Klp31E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk
3L	2153420	3L_2153420_SNP [dm3] 3L_2153420_SNP [dm6]	A	T	1.062e^-5	0.119	UTR_3_PRIME CG15822
3L	20427863	3L_20427863_SNP [dm3] 3L_20434763_SNP [dm6]	A	G	1.074e^-5	0.119	DOWNSTREAM mRpL15 INTRON Psn
2L	14203977	2L_14203977_SNP [dm3] 2L_14203977_SNP [dm6]	G	A	1.075e^-5	0.119	INTRON Dyrk2
2L	4259014	2L_4259014_SNP [dm3] 2L_4259014_SNP [dm6]	T	G	1.076e^-5	0.119	DOWNSTREAM CG15425 & 1 other INTERGENIC
3L	13526850	3L_13526850_SNP [dm3] 3L_13533750_SNP [dm6]	T	G	1.080e^-5	0.119	UTR_3_PRIME bru-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18885603	2R_18885603_SNP [dm3] 2R_22998080_SNP [dm6]	A	T	1.090e^-5	0.119	INTRON twi & 1 other
2L	11193478	2L_11193478_SNP [dm3] 2L_11193478_SNP [dm6]	G	T	1.092e^-5	0.119	INTRON Ca-beta
2R	18885807	2R_18885807_SNP [dm3] 2R_22998284_SNP [dm6]	A	G	1.114e^-5	0.12	INTRON twi & 1 other
2L	15112972	2L_15112972_SNP [dm3] 2L_15112972_SNP [dm6]	G	A	1.121e^-5	0.12	UTR_3_PRIME CG15269 UPSTREAM stc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6678783	X_6678783_INS [dm3] X_6784750_INS [dm6]	G	GG	1.132e^-5	0.12	INTRON C3G
2L	2823394	2L_2823394_SNP [dm3] 2L_2823394_SNP [dm6]	T	G	1.147e^-5	0.12	DOWNSTREAM CG3123 INTRON Duox
2R	9369373	2R_9369373_SNP [dm3] 2R_13481868_SNP [dm6]	G	A	1.147e^-5	0.12	NON_SYNONYMOUS_CODING arr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	12859360	3R_12859360_SNP [dm3] 3R_17033638_SNP [dm6]	C	T	1.153e^-5	0.12	UTR_3_PRIME CG4009 DOWNSTREAM CG4009 & 1 other
3L	13278999	3L_13278999_SNP [dm3] 3L_13285899_SNP [dm6]	T	C	1.158e^-5	0.12	UPSTREAM CR45752 DOWNSTREAM CR45753 INTERGENIC
2L	15554079	2L_15554079_SNP [dm3] 2L_15554079_SNP [dm6]	C	A	1.164e^-5	0.12	INTRON kek3
2L	14626918	2L_14626918_SNP [dm3] 2L_14626918_SNP [dm6]	T	C	1.165e^-5	0.12	INTRON osp
3L	20424857	3L_20424857_SNP [dm3] 3L_20431757_SNP [dm6]	A	T	1.173e^-5	0.12	UPSTREAM Psn INTRON Las	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	13527299	3L_13527299_SNP [dm3] 3L_13534199_SNP [dm6]	T	C	1.176e^-5	0.12	UTR_3_PRIME bru-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14658543	3L_14658543_DEL [dm3] 3L_14665443_DEL [dm6]	AA	A	1.188e^-5	0.121	INTRON dlp	TF binding site mE1_TFBS_HSA
3R	17003310	3R_17003310_SNP [dm3] 3R_21177588_SNP [dm6]	A	T	1.211e^-5	0.121	INTRON SNF4Agamma
3L	5199993	3L_5199993_SNP [dm3] 3L_5206893_SNP [dm6]	G	A	1.214e^-5	0.121	INTRON shep
3R	11726558	3R_11726558_SNP [dm3] 3R_15900836_SNP [dm6]	G	A	1.215e^-5	0.121	INTRON glob1	TF binding site mE1_TFBS_HSA
2L	9348146	2L_9348146_DEL [dm3] 2L_9348146_DEL [dm6]	CC	C	1.217e^-5	0.121	DOWNSTREAM CR44802 INTERGENIC
2R	5137274	2R_5137274_SNP [dm3] 2R_9249769_SNP [dm6]	T	C	1.222e^-5	0.121	INTERGENIC
2R	18055620	2R_18055620_SNP [dm3] 2R_22168115_SNP [dm6]	C	G	1.230e^-5	0.121	INTRON a
3L	13278996	3L_13278996_SNP [dm3] 3L_13285896_SNP [dm6]	G	C	1.237e^-5	0.121	UPSTREAM CR45752 DOWNSTREAM CR45753 INTERGENIC
2R	1320257	2R_1320257_SNP [dm3] 2R_5432752_SNP [dm6]	A	T	1.260e^-5	0.123	INTRON laccase2	transposable element FlyBase
3R	16054805	3R_16054805_SNP [dm3] 3R_20229083_SNP [dm6]	A	T	1.276e^-5	0.124	INTRON Nlg4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7609904	3L_7609904_SNP [dm3] 3L_7616804_SNP [dm6]	C	T	1.287e^-5	0.124	INTRON CG33275
2R	12361251	2R_12361251_SNP [dm3] 2R_16473746_SNP [dm6]	C	T	1.292e^-5	0.124	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	10870214	2L_10870214_DEL [dm3] 2L_10870214_DEL [dm6]	GACTTCAAAGGATATA...	G	1.306e^-5	0.125	UTR_5_PRIME CG12517 UPSTREAM CR45453	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8335797	2R_8335797_SNP [dm3] 2R_12448292_SNP [dm6]	G	T	1.326e^-5	0.126	INTRON Dyb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8800753	2L_8800753_SNP [dm3] 2L_8800753_SNP [dm6]	G	T	1.336e^-5	0.126	INTERGENIC
2R	8445371	2R_8445371_SNP [dm3] 2R_12557866_SNP [dm6]	C	T	1.339e^-5	0.126	INTRON fra	TF binding site mE1_TFBS_cad
3L	20870837	3L_20870837_SNP [dm3] 3L_20877737_SNP [dm6]	A	G	1.345e^-5	0.126	INTRON CG32432
3L	12848521	3L_12848521_SNP [dm3] 3L_12855421_SNP [dm6]	G	T	1.367e^-5	0.127	SYNONYMOUS_CODING Ent3	TF binding site mE1_TFBS_cad
2R	18885407	2R_18885407_SNP [dm3] 2R_22997884_SNP [dm6]	T	G	1.385e^-5	0.128	INTRON twi & 1 other
2L	3616792	2L_3616792_SNP [dm3] 2L_3616792_SNP [dm6]	T	C	1.401e^-5	0.129	EXON CR44310	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	11765591	2L_11765591_SNP [dm3] 2L_11765591_SNP [dm6]	A	G	1.407e^-5	0.129	INTERGENIC
2L	11812420	2L_11812420_SNP [dm3] 2L_11812420_SNP [dm6]	C	T	1.429e^-5	0.13	SYNONYMOUS_CODING CycY	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1654342	2L_1654342_SNP [dm3] 2L_1654342_SNP [dm6]	G	T	1.448e^-5	0.131	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
2L	9348622	2L_9348622_SNP [dm3] 2L_9348622_SNP [dm6]	A	G	1.459e^-5	0.132	UPSTREAM CG43350 DOWNSTREAM CR44802 INTERGENIC
2R	17408810	2R_17408810_SNP [dm3] 2R_21521305_SNP [dm6]	G	A	1.476e^-5	0.132	SYNONYMOUS_CODING CG30289 UPSTREAM CG30288	TF binding site BDTNP1_TFBS_dl
2R	16969757	2R_16969757_SNP [dm3] 2R_21082252_SNP [dm6]	G	A	1.484e^-5	0.132	INTRON Treh
3R	20851110	3R_20851110_SNP [dm3] 3R_25025388_SNP [dm6]	A	G	1.485e^-5	0.132	UTR_5_PRIME Hr96 UPSTREAM CG11781 DOWNSTREAM beta4GalT7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	10347101	2L_10347101_SNP [dm3] 2L_10347101_SNP [dm6]	G	A	1.492e^-5	0.132	SYNONYMOUS_CODING CG5022 DOWNSTREAM CG34367	TF binding site mE1_TFBS_cad
2L	18956108	2L_18956108_SNP [dm3] 2L_18956108_SNP [dm6]	C	T	1.511e^-5	0.132	NON_SYNONYMOUS_CODING CG10623
3L	1657743	3L_1657743_SNP [dm3] 3L_1657743_SNP [dm6]	C	T	1.515e^-5	0.132	NON_SYNONYMOUS_CODING CG7971
3L	1657795	3L_1657795_SNP [dm3] 3L_1657795_SNP [dm6]	T	C	1.515e^-5	0.132	SYNONYMOUS_CODING CG7971
2L	9250259	2L_9250259_SNP [dm3] 2L_9250259_SNP [dm6]	C	T	1.522e^-5	0.132	UTR_3_PRIME aust DOWNSTREAM CR43734 & 1 other
3R	20848744	3R_20848744_SNP [dm3] 3R_25023022_SNP [dm6]	T	C	1.522e^-5	0.132	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
3L	13279050	3L_13279050_DEL [dm3] 3L_13285950_DEL [dm6]	AACTACTTTTTATATGTTA...	A	1.527e^-5	0.132	UPSTREAM CR45752 DOWNSTREAM CR45753 INTERGENIC
2R	12833710	2R_12833710_SNP [dm3] 2R_16946205_SNP [dm6]	G	A	1.554e^-5	0.132	DOWNSTREAM CG34190 INTRON CG15614
3L	14661182	3L_14661182_DEL [dm3] 3L_14668082_DEL [dm6]	AAA	A	1.555e^-5	0.132	INTRON dlp
2R	9905261	2R_9905261_SNP [dm3] 2R_14017756_SNP [dm6]	T	G	1.559e^-5	0.132	INTRON mam
3R	9767863	3R_9767863_SNP [dm3] 3R_13942141_SNP [dm6]	C	G	1.586e^-5	0.133	DOWNSTREAM Art9 INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2R	19208363	2R_19208363_SNP [dm3] 2R_23320840_SNP [dm6]	G	A	1.587e^-5	0.133	DOWNSTREAM CG30416 INTERGENIC
3L	20870761	3L_20870761_SNP [dm3] 3L_20877661_SNP [dm6]	A	G	1.598e^-5	0.133	INTRON CG32432
3L	20870797	3L_20870797_SNP [dm3] 3L_20877697_SNP [dm6]	G	A	1.598e^-5	0.133	INTRON CG32432
3L	20430498	3L_20430498_SNP [dm3] 3L_20437398_SNP [dm6]	G	T	1.603e^-5	0.133	SYNONYMOUS_CODING CG5872 UTR_3_PRIME CG5872 DOWNSTREAM CG11796	TF binding site mE1_TFBS_sens
2R	14399226	2R_14399226_INS [dm3] 2R_18511721_INS [dm6]	A	AA	1.624e^-5	0.134	INTERGENIC
2R	6642699	2R_6642699_SNP [dm3] 2R_10755194_SNP [dm6]	G	A	1.655e^-5	0.136	SYNONYMOUS_CODING CG33144	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4437580	2R_4437580_SNP [dm3] 2R_8550075_SNP [dm6]	G	A	1.663e^-5	0.136	INTERGENIC
3R	26101948	3R_26101948_SNP [dm3] 3R_30276226_SNP [dm6]	C	G	1.705e^-5	0.139	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18885408	2R_18885408_SNP [dm3] 2R_22997885_SNP [dm6]	G	T	1.709e^-5	0.139	INTRON twi & 1 other
2R	14407352	2R_14407352_SNP [dm3] 2R_18519847_SNP [dm6]	G	A	1.717e^-5	0.139	INTRON CG43066	TF binding site mE1_TFBS_inv
2L	14949644	2L_14949644_SNP [dm3] 2L_14949644_SNP [dm6]	A	C	1.737e^-5	0.14	INTRON CG42313
3R	9769755	3R_9769755_SNP [dm3] 3R_13944033_SNP [dm6]	G	T	1.761e^-5	0.141	UPSTREAM Art9 DOWNSTREAM Art6 INTERGENIC	TF binding site mE1_TFBS_cad
3L	5888500	3L_5888500_SNP [dm3] 3L_5895400_SNP [dm6]	C	T	1.779e^-5	0.142	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17048197	2R_17048197_SNP [dm3] 2R_21160692_SNP [dm6]	T	A	1.790e^-5	0.142	UPSTREAM CG30389 & 1 other DOWNSTREAM tRNA:CR30206 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	15253947	3L_15253947_INS [dm3] 3L_15260847_INS [dm6]	A	ATTCATAAAATT...	1.904e^-5	0.151	INTERGENIC	TF binding site mE1_TFBS_cad
3L	1835421	3L_1835421_SNP [dm3] 3L_1835421_SNP [dm6]	T	G	1.932e^-5	0.152	UPSTREAM Cpr62Bb INTERGENIC
3L	5198440	3L_5198440_SNP [dm3] 3L_5205340_SNP [dm6]	G	A	1.977e^-5	0.155	INTRON shep
2R	6619930	2R_6619930_SNP [dm3] 2R_10732425_SNP [dm6]	A	C	1.982e^-5	0.155	UPSTREAM CG12338 & 1 other INTRON CG7220
2R	9722369	2R_9722369_SNP [dm3] 2R_13834864_SNP [dm6]	T	A	1.995e^-5	0.155	INTRON CG6337	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17087746	2R_17087746_SNP [dm3] 2R_21200241_SNP [dm6]	A	T	2.036e^-5	0.157	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	17087749	2R_17087749_INS [dm3] 2R_21200244_INS [dm6]	T	TT	2.036e^-5	0.157	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	8588312	2R_8588312_SNP [dm3] 2R_12700807_SNP [dm6]	G	A	2.045e^-5	0.157	UTR_3_PRIME wuc
X	8962400	X_8962400_SNP [dm3] X_9068367_SNP [dm6]	T	G	2.054e^-5	0.157	UPSTREAM CG15365 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7768118	3L_7768118_SNP [dm3] 3L_7775018_SNP [dm6]	A	G	2.059e^-5	0.157	INTRON Clk	regulatory region REDfly_CRMs
2R	6619674	2R_6619674_SNP [dm3] 2R_10732169_SNP [dm6]	G	A	2.069e^-5	0.157	UPSTREAM CG12338 & 1 other INTRON CG7220
2L	5467017	2L_5467017_SNP [dm3] 2L_5467017_SNP [dm6]	C	A	2.101e^-5	0.158	UTR_3_PRIME mid DOWNSTREAM mid
2L	13601735	2L_13601735_SNP [dm3] 2L_13601735_SNP [dm6]	T	C	2.102e^-5	0.158	INTRON kuz
2R	12199657	2R_12199657_SNP [dm3] 2R_16312152_SNP [dm6]	T	A	2.103e^-5	0.158	INTRON Nox
2L	8800773	2L_8800773_SNP [dm3] 2L_8800773_SNP [dm6]	C	T	2.117e^-5	0.158	INTERGENIC
3R	16330847	3R_16330847_SNP [dm3] 3R_20505125_SNP [dm6]	T	C	2.125e^-5	0.158	SYNONYMOUS_CODING Or92a
2R	9967012	2R_9967012_SNP [dm3] 2R_14079507_SNP [dm6]	A	T	2.179e^-5	0.161	INTRON Prosap
3L	7425643	3L_7425643_SNP [dm3] 3L_7432543_SNP [dm6]	T	A	2.183e^-5	0.161	INTRON CG42458
3L	20413476	3L_20413476_SNP [dm3] 3L_20420376_SNP [dm6]	G	T	2.187e^-5	0.161	NON_SYNONYMOUS_CODING zye	TF binding site mE1_TFBS_cad
2L	3861490	2L_3861490_DEL [dm3] 2L_3861490_DEL [dm6]	TAT	T	2.202e^-5	0.161	EXON CR44078	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	12520763	2L_12520763_INS [dm3] 2L_12520763_INS [dm6]	A	AAATGAACT	2.213e^-5	0.161	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_ttk
3L	6338120	3L_6338120_SNP [dm3] 3L_6345020_SNP [dm6]	C	G	2.232e^-5	0.161	INTRON CG13300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	13279101	3L_13279101_SNP [dm3] 3L_13286001_SNP [dm6]	A	G	2.232e^-5	0.161	UPSTREAM CR45752 DOWNSTREAM CR45753 INTERGENIC
X	11182670	X_11182670_SNP [dm3] X_11288637_SNP [dm6]	A	G	2.238e^-5	0.161	INTRON CG44422
X	16613515	X_16613515_SNP [dm3] X_16719482_SNP [dm6]	A	G	2.261e^-5	0.162	INTRON CG34325	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	9547595	2L_9547595_SNP [dm3] 2L_9547595_SNP [dm6]	T	G	2.304e^-5	0.165	DOWNSTREAM jp & 1 other INTERGENIC	transposable element FlyBase
X	16004276	X_16004276_SNP [dm3] X_16110243_SNP [dm6]	C	A	2.323e^-5	0.166	INTERGENIC
2L	11230628	2L_11230628_SNP [dm3] 2L_11230628_SNP [dm6]	C	G	2.338e^-5	0.166	INTRON ab
3L	8506901	3L_8506901_INS [dm3] 3L_8513801_INS [dm6]	C	CGGACACGATGC...	2.357e^-5	0.166	DOWNSTREAM CG6683 & 1 other INTRON CG6765	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20415222	3L_20415222_SNP [dm3] 3L_20422122_SNP [dm6]	T	C	2.363e^-5	0.166	SYNONYMOUS_CODING zye	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	20558912	X_20558912_SNP [dm3] X_20687885_SNP [dm6]	G	C	2.369e^-5	0.166	DOWNSTREAM CR43862 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	7769948	2L_7769948_SNP [dm3] 2L_7769948_SNP [dm6]	G	T	2.383e^-5	0.166	INTRON CG7191
3R	9774957	3R_9774957_SNP [dm3] 3R_13949235_SNP [dm6]	C	T	2.386e^-5	0.166	UTR_3_PRIME CG31517 DOWNSTREAM CG9926	TF binding site BDTNP1_TFBS_twi
2L	3861522	2L_3861522_SNP [dm3] 2L_3861522_SNP [dm6]	G	C	2.395e^-5	0.166	INTRON CR44078	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	14717809	2L_14717809_SNP [dm3] 2L_14717809_SNP [dm6]	C	T	2.411e^-5	0.166	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14717914	2L_14717914_SNP [dm3] 2L_14717914_SNP [dm6]	C	T	2.411e^-5	0.166	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9968200	3L_9968200_SNP [dm3] 3L_9975100_SNP [dm6]	G	T	2.429e^-5	0.167	UTR_5_PRIME dpr6
2R	6619676	2R_6619676_SNP [dm3] 2R_10732171_SNP [dm6]	C	T	2.446e^-5	0.167	UPSTREAM CG12338 & 1 other INTRON CG7220
2R	1254879	2R_1254879_SNP [dm3] 2R_5367374_SNP [dm6]	G	T	2.475e^-5	0.169	DOWNSTREAM CR42646 INTERGENIC	transposable element FlyBase
2R	9722355	2R_9722355_SNP [dm3] 2R_13834850_SNP [dm6]	T	C	2.483e^-5	0.169	INTRON CG6337	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8785703	2L_8785703_DEL [dm3] 2L_8785703_DEL [dm6]	GG	G	2.503e^-5	0.169	INTERGENIC
3L	15064170	3L_15064170_SNP [dm3] 3L_15071070_SNP [dm6]	T	G	2.510e^-5	0.169	INTRON cp309
2R	1241013	2R_1241013_SNP [dm3] 2R_5353508_SNP [dm6]	T	G	2.515e^-5	0.169	UPSTREAM CG10396 INTERGENIC	transposable element FlyBase
3R	26610110	3R_26610110_SNP [dm3] 3R_30784388_SNP [dm6]	G	A	2.530e^-5	0.169	NON_SYNONYMOUS_CODING zfh1 UPSTREAM CR45189	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10870234	2L_10870234_SNP [dm3] 2L_10870234_SNP [dm6]	C	A	2.563e^-5	0.17	UTR_5_PRIME CG12517 UPSTREAM CR45453	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13279023	3L_13279023_MNP [dm3] 3L_13285923_MNP [dm6]	ATAT	TATA	2.564e^-5	0.17	UPSTREAM CR45752 DOWNSTREAM CR45753 INTERGENIC
3L	13279029	3L_13279029_DEL [dm3] 3L_13285929_DEL [dm6]	ACG	A	2.564e^-5	0.17	UPSTREAM CR45752 DOWNSTREAM CR45753 INTERGENIC
2L	18042894	2L_18042894_SNP [dm3] 2L_18042894_SNP [dm6]	A	T	2.595e^-5	0.17	INTRON rdo
2R	1298082	2R_1298082_SNP [dm3] 2R_5410577_SNP [dm6]	C	T	2.598e^-5	0.17	INTERGENIC
3R	27035612	3R_27035612_SNP [dm3] 3R_31209890_SNP [dm6]	T	A	2.606e^-5	0.17	INTRON chp
2R	10857656	2R_10857656_SNP [dm3] 2R_14970151_SNP [dm6]	A	G	2.610e^-5	0.17	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1657807	3L_1657807_SNP [dm3] 3L_1657807_SNP [dm6]	G	T	2.619e^-5	0.17	SYNONYMOUS_CODING CG7971
X	11830621	X_11830621_SNP [dm3] X_11936588_SNP [dm6]	T	C	2.632e^-5	0.171	INTRON cac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2312643	2L_2312643_SNP [dm3] 2L_2312643_SNP [dm6]	C	A	2.647e^-5	0.171	INTRON CG9967 & 1 other
3L	20422591	3L_20422591_SNP [dm3] 3L_20429491_SNP [dm6]	G	A	2.684e^-5	0.172	INTRON CG5262	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
X	2902093	X_2902093_SNP [dm3] X_3008060_SNP [dm6]	C	A	2.687e^-5	0.172	INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	13601743	2L_13601743_SNP [dm3] 2L_13601743_SNP [dm6]	T	A	2.709e^-5	0.173	INTRON kuz
2R	11586353	2R_11586353_SNP [dm3] 2R_15698848_SNP [dm6]	C	T	2.720e^-5	0.173	UTR_3_PRIME CG42662 & 1 other DOWNSTREAM CG33462	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	16886041	3L_16886041_SNP [dm3] 3L_16892941_SNP [dm6]	A	T	2.746e^-5	0.174	INTRON Lmpt
2R	8781232	2R_8781232_SNP [dm3] 2R_12893727_SNP [dm6]	G	T	2.787e^-5	0.175	INTRON vg
2L	14625808	2L_14625808_INS [dm3] 2L_14625808_INS [dm6]	T	TTCCTAACACACCAA...	2.790e^-5	0.175	INTRON osp
2L	3215269	2L_3215269_SNP [dm3] 2L_3215269_SNP [dm6]	C	A	2.840e^-5	0.175	INTERGENIC
3L	6442488	3L_6442488_SNP [dm3] 3L_6449388_SNP [dm6]	G	A	2.844e^-5	0.175	INTRON CG42747
3L	7990775	3L_7990775_SNP [dm3] 3L_7997675_SNP [dm6]	C	T	2.858e^-5	0.175	INTRON nmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	7990782	3L_7990782_SNP [dm3] 3L_7997682_SNP [dm6]	G	C	2.858e^-5	0.175	INTRON nmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	8780923	2R_8780923_SNP [dm3] 2R_12893418_SNP [dm6]	G	C	2.872e^-5	0.175	INTRON vg
3L	6338400	3L_6338400_SNP [dm3] 3L_6345300_SNP [dm6]	C	T	2.914e^-5	0.175	INTRON CG13300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	1252054	2R_1252054_SNP [dm3] 2R_5364549_SNP [dm6]	T	G	2.916e^-5	0.175	EXON CR42646
2R	1252864	2R_1252864_SNP [dm3] 2R_5365359_SNP [dm6]	T	G	2.916e^-5	0.175	EXON CR42646
2R	1254806	2R_1254806_SNP [dm3] 2R_5367301_SNP [dm6]	C	T	2.916e^-5	0.175	EXON CR42646	transposable element FlyBase
2R	1264540	2R_1264540_SNP [dm3] 2R_5377035_SNP [dm6]	C	T	2.916e^-5	0.175	INTERGENIC	transposable element FlyBase
2R	18055527	2R_18055527_SNP [dm3] 2R_22168022_SNP [dm6]	C	T	2.923e^-5	0.175	INTRON a	TF binding site mE1_TFBS_chinmo
3L	20858052	3L_20858052_SNP [dm3] 3L_20864952_SNP [dm6]	T	G	2.929e^-5	0.175	INTRON CG32432
3L	20858719	3L_20858719_SNP [dm3] 3L_20865619_SNP [dm6]	A	G	2.929e^-5	0.175	INTRON CG32432
2R	16779242	2R_16779242_SNP [dm3] 2R_20891737_SNP [dm6]	G	A	2.931e^-5	0.175	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	13279112	3L_13279112_SNP [dm3] 3L_13286012_SNP [dm6]	T	C	2.934e^-5	0.175	UPSTREAM CR45752 DOWNSTREAM CR45753 INTERGENIC
2R	17087413	2R_17087413_DEL [dm3] 2R_21199908_DEL [dm6]	ATGA	A	2.938e^-5	0.175	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	4859129	X_4859129_DEL [dm3] X_4965096_DEL [dm6]	AA	A	2.950e^-5	0.175	INTRON CR44833
2L	8540365	2L_8540365_SNP [dm3] 2L_8540365_SNP [dm6]	C	A	2.955e^-5	0.175	INTRON CG17834
2R	5135478	2R_5135478_SNP [dm3] 2R_9247973_SNP [dm6]	T	G	2.960e^-5	0.175	UPSTREAM hig INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20068514	2L_20068514_SNP [dm3] 2L_20068514_SNP [dm6]	T	C	2.975e^-5	0.175	DOWNSTREAM CR44907 INTRON bwa
3L	6544163	3L_6544163_SNP [dm3] 3L_6551063_SNP [dm6]	G	T	2.986e^-5	0.175	START_GAINED CG18769 UTR_5_PRIME CG18769 DOWNSTREAM sfl INTRON CG18769	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	11693613	2L_11693613_SNP [dm3] 2L_11693613_SNP [dm6]	C	G	3.006e^-5	0.175	INTERGENIC	TF binding site mE1_TFBS_inv
3R	23023472	3R_23023472_SNP [dm3] 3R_27197750_SNP [dm6]	T	A	3.007e^-5	0.175	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	12301229	3L_12301229_SNP [dm3] 3L_12308129_SNP [dm6]	C	A	3.016e^-5	0.175	INTERGENIC
3L	12301236	3L_12301236_SNP [dm3] 3L_12308136_SNP [dm6]	G	A	3.016e^-5	0.175	INTERGENIC
3R	17211862	3R_17211862_SNP [dm3] 3R_21386140_SNP [dm6]	A	G	3.032e^-5	0.176	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
3L	8510193	3L_8510193_SNP [dm3] 3L_8517093_SNP [dm6]	C	A	3.056e^-5	0.176	INTRON CG6765	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8650559	2L_8650559_SNP [dm3] 2L_8650559_SNP [dm6]	C	T	3.071e^-5	0.176	INTRON Sema-1a
X	11182377	X_11182377_INS [dm3] X_11288344_INS [dm6]	G	AA	3.071e^-5	0.176	INTRON CG44422
3R	23023451	3R_23023451_SNP [dm3] 3R_27197729_SNP [dm6]	T	G	3.073e^-5	0.176	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	8776870	2R_8776870_SNP [dm3] 2R_12889365_SNP [dm6]	T	C	3.086e^-5	0.176	INTRON vg	regulatory region FlyBase TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14567985	3L_14567985_SNP [dm3] 3L_14574885_SNP [dm6]	A	T	3.097e^-5	0.176	INTERGENIC
3R	12846880	3R_12846880_SNP [dm3] 3R_17021158_SNP [dm6]	A	T	3.102e^-5	0.176	UPSTREAM AdSL INTRON Pxd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7610263	3L_7610263_SNP [dm3] 3L_7617163_SNP [dm6]	A	G	3.120e^-5	0.176	SYNONYMOUS_CODING CG33275	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1709266	3L_1709266_INS [dm3] 3L_1709266_INS [dm6]	G	GCG	3.123e^-5	0.176	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	20413173	3L_20413173_SNP [dm3] 3L_20420073_SNP [dm6]	C	T	3.124e^-5	0.176	SYNONYMOUS_CODING zye	TF binding site mE1_TFBS_cad
X	11182341	X_11182341_SNP [dm3] X_11288308_SNP [dm6]	T	C	3.145e^-5	0.176	INTRON CG44422
2L	15740724	2L_15740724_SNP [dm3] 2L_15740724_SNP [dm6]	A	T	3.171e^-5	0.177	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9966987	2R_9966987_SNP [dm3] 2R_14079482_SNP [dm6]	A	T	3.185e^-5	0.177	INTRON Prosap
3L	13279071	3L_13279071_SNP [dm3] 3L_13285971_SNP [dm6]	G	T	3.197e^-5	0.178	UPSTREAM CR45752 DOWNSTREAM CR45753 INTERGENIC
3R	14842083	3R_14842083_SNP [dm3] 3R_19016361_SNP [dm6]	T	C	3.220e^-5	0.178	SYNONYMOUS_CODING gukh INTRON gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	19232059	3R_19232059_SNP [dm3] 3R_23406337_SNP [dm6]	A	G	3.227e^-5	0.178	SYNONYMOUS_CODING Ir94e
2R	14407313	2R_14407313_SNP [dm3] 2R_18519808_SNP [dm6]	A	G	3.243e^-5	0.179	INTRON CG43066	TF binding site mE1_TFBS_inv
2R	12199664	2R_12199664_SNP [dm3] 2R_16312159_SNP [dm6]	T	G	3.272e^-5	0.179	INTRON Nox
2L	18043108	2L_18043108_SNP [dm3] 2L_18043108_SNP [dm6]	A	G	3.275e^-5	0.179	INTRON rdo
3L	8508431	3L_8508431_SNP [dm3] 3L_8515331_SNP [dm6]	G	A	3.278e^-5	0.179	UPSTREAM CG6683 INTRON CG6765	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
2R	17984313	2R_17984313_SNP [dm3] 2R_22096808_SNP [dm6]	A	G	3.307e^-5	0.179	INTRON CG11073
3R	4298979	3R_4298979_SNP [dm3] 3R_8473257_SNP [dm6]	C	T	3.317e^-5	0.179	INTRON CG45263	TF binding site BDTNP1_TFBS_prd
2R	4438956	2R_4438956_SNP [dm3] 2R_8551451_SNP [dm6]	T	G	3.321e^-5	0.179	DOWNSTREAM CG12780 INTERGENIC
3R	27026469	3R_27026469_SNP [dm3] 3R_31200747_SNP [dm6]	C	A	3.325e^-5	0.179	INTRON CG1544	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11955668	3L_11955668_SNP [dm3] 3L_11962568_SNP [dm6]	A	T	3.353e^-5	0.179	SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo
3R	25539025	3R_25539025_SNP [dm3] 3R_29713303_SNP [dm6]	T	C	3.392e^-5	0.179	EXON CR45569
3L	5200406	3L_5200406_SNP [dm3] 3L_5207306_SNP [dm6]	A	C	3.397e^-5	0.179	INTRON shep
3L	825214	3L_825214_SNP [dm3] 3L_825214_SNP [dm6]	C	T	3.409e^-5	0.179	INTERGENIC
X	6758820	X_6758820_DEL [dm3] X_6864787_DEL [dm6]	TGAGTTTTAACTG...	T	3.430e^-5	0.179	INTRON CG14434 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	20868412	3L_20868412_SNP [dm3] 3L_20875312_SNP [dm6]	C	T	3.438e^-5	0.179	INTRON CG32432
3L	20869384	3L_20869384_SNP [dm3] 3L_20876284_SNP [dm6]	C	T	3.438e^-5	0.179	INTRON CG32432
3L	20869837	3L_20869837_SNP [dm3] 3L_20876737_SNP [dm6]	G	A	3.438e^-5	0.179	INTRON CG32432
3L	20869853	3L_20869853_SNP [dm3] 3L_20876753_SNP [dm6]	A	G	3.438e^-5	0.179	INTRON CG32432
2L	12578447	2L_12578447_SNP [dm3] 2L_12578447_SNP [dm6]	T	A	3.441e^-5	0.179	INTERGENIC
2L	11927160	2L_11927160_SNP [dm3] 2L_11927160_SNP [dm6]	G	A	3.444e^-5	0.179	INTRON Pde1c
2L	12194124	2L_12194124_SNP [dm3] 2L_12194124_SNP [dm6]	G	T	3.450e^-5	0.179	INTRON aret
2R	9967141	2R_9967141_SNP [dm3] 2R_14079636_SNP [dm6]	T	A	3.457e^-5	0.179	INTRON Prosap
2R	1254151	2R_1254151_SNP [dm3] 2R_5366646_SNP [dm6]	G	T	3.471e^-5	0.179	EXON CR42646
2L	11693762	2L_11693762_SNP [dm3] 2L_11693762_SNP [dm6]	G	A	3.481e^-5	0.179	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11693767	2L_11693767_SNP [dm3] 2L_11693767_SNP [dm6]	A	G	3.481e^-5	0.179	INTERGENIC	TF binding site mE1_TFBS_inv
3L	7969216	3L_7969216_SNP [dm3] 3L_7976116_SNP [dm6]	T	G	3.484e^-5	0.179	UTR_5_PRIME HP4 UPSTREAM CG8209	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk
3L	7969217	3L_7969217_SNP [dm3] 3L_7976117_SNP [dm6]	G	C	3.484e^-5	0.179	UTR_5_PRIME HP4 UPSTREAM CG8209	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk
3L	6338390	3L_6338390_SNP [dm3] 3L_6345290_SNP [dm6]	T	C	3.502e^-5	0.179	INTRON CG13300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6338398	3L_6338398_SNP [dm3] 3L_6345298_SNP [dm6]	C	A	3.524e^-5	0.179	INTRON CG13300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8498280	3R_8498280_SNP [dm3] 3R_12672558_SNP [dm6]	G	A	3.544e^-5	0.179	INTRON CG14395	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1244735	2R_1244735_SNP [dm3] 2R_5357230_SNP [dm6]	T	A	3.547e^-5	0.179	INTERGENIC
3R	27035572	3R_27035572_SNP [dm3] 3R_31209850_SNP [dm6]	T	C	3.566e^-5	0.179	INTRON chp
3L	5386333	3L_5386333_SNP [dm3] 3L_5393233_SNP [dm6]	A	G	3.566e^-5	0.179	INTERGENIC
3L	5386334	3L_5386334_SNP [dm3] 3L_5393234_SNP [dm6]	G	T	3.566e^-5	0.179	INTERGENIC
2L	3614127	2L_3614127_SNP [dm3] 2L_3614127_SNP [dm6]	T	A	3.572e^-5	0.179	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad
3R	27024862	3R_27024862_SNP [dm3] 3R_31199140_SNP [dm6]	G	A	3.585e^-5	0.179	INTRON CG1544	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	15722367	X_15722367_SNP [dm3] X_15828334_SNP [dm6]	G	T	3.655e^-5	0.182	NON_SYNONYMOUS_CODING Chc DOWNSTREAM sd
3L	5200407	3L_5200407_DEL [dm3] 3L_5207307_DEL [dm6]	CTA	C	3.768e^-5	0.186	INTRON shep
2L	15505321	2L_15505321_SNP [dm3] 2L_15505321_SNP [dm6]	T	C	3.786e^-5	0.186	DOWNSTREAM lace INTERGENIC
3R	12832381	3R_12832381_SNP [dm3] 3R_17006659_SNP [dm6]	T	C	3.797e^-5	0.186	SYNONYMOUS_CODING Irc
2L	11192164	2L_11192164_SNP [dm3] 2L_11192164_SNP [dm6]	A	G	3.804e^-5	0.186	INTRON Ca-beta
X	15076461	X_15076461_SNP [dm3] X_15182428_SNP [dm6]	T	G	3.816e^-5	0.186	INTRON CG43737
3R	12922446	3R_12922446_SNP [dm3] 3R_17096724_SNP [dm6]	G	A	3.819e^-5	0.186	INTRON cher
2L	3827607	2L_3827607_SNP [dm3] 2L_3827607_SNP [dm6]	A	G	3.820e^-5	0.186	DOWNSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	3827610	2L_3827610_SNP [dm3] 2L_3827610_SNP [dm6]	G	C	3.820e^-5	0.186	DOWNSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	20420834	3L_20420834_SNP [dm3] 3L_20427734_SNP [dm6]	C	T	3.842e^-5	0.186	UPSTREAM CG5274 DOWNSTREAM CG5262 INTERGENIC	TF binding site BDTNP1_TFBS_Med
3L	14424308	3L_14424308_SNP [dm3] 3L_14431208_SNP [dm6]	T	A	3.844e^-5	0.186	INTRON bbg
X	16902612	X_16902612_SNP [dm3] X_17008579_SNP [dm6]	A	G	3.854e^-5	0.186	INTRON CG45002
2R	9967014	2R_9967014_SNP [dm3] 2R_14079509_SNP [dm6]	T	G	3.860e^-5	0.186	INTRON Prosap
2L	15553641	2L_15553641_SNP [dm3] 2L_15553641_SNP [dm6]	T	A	3.862e^-5	0.186	INTRON kek3
3L	16880482	3L_16880482_SNP [dm3] 3L_16887382_SNP [dm6]	G	C	3.877e^-5	0.186	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt
X	4859137	X_4859137_DEL [dm3] X_4965104_DEL [dm6]	TTTTTTTTTCGGC...	T	3.883e^-5	0.186	INTRON CR44833
3L	13278987	3L_13278987_SNP [dm3] 3L_13285887_SNP [dm6]	G	T	3.887e^-5	0.186	UPSTREAM CR45752 DOWNSTREAM CR45753 INTERGENIC
3L	13278817	3L_13278817_SNP [dm3] 3L_13285717_SNP [dm6]	C	G	3.938e^-5	0.187	DOWNSTREAM CR45753 EXON CR45752
X	16666680	X_16666680_SNP [dm3] X_16772647_SNP [dm6]	G	A	3.950e^-5	0.187	INTRON if	TF binding site BDTNP1_TFBS_da
2R	18024399	2R_18024399_SNP [dm3] 2R_22136894_SNP [dm6]	C	G	3.962e^-5	0.187	UPSTREAM a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9990358	2L_9990358_SNP [dm3] 2L_9990358_SNP [dm6]	T	G	3.970e^-5	0.187	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	26610168	3R_26610168_SNP [dm3] 3R_30784446_SNP [dm6]	C	G	3.972e^-5	0.187	SYNONYMOUS_CODING zfh1 UPSTREAM CR45189	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25374062	3R_25374062_SNP [dm3] 3R_29548340_SNP [dm6]	G	C	3.975e^-5	0.187	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9109649	2L_9109649_SNP [dm3] 2L_9109649_SNP [dm6]	G	A	4.009e^-5	0.187	INTERGENIC
3R	13411527	3R_13411527_SNP [dm3] 3R_17585805_SNP [dm6]	A	T	4.016e^-5	0.187	INTERGENIC
2R	9726462	2R_9726462_SNP [dm3] 2R_13838957_SNP [dm6]	A	T	4.025e^-5	0.187	SYNONYMOUS_CODING CG6347	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8624858	3R_8624858_SNP [dm3] 3R_12799136_SNP [dm6]	T	G	4.025e^-5	0.187	INTERGENIC
3R	8624896	3R_8624896_SNP [dm3] 3R_12799174_SNP [dm6]	T	A	4.025e^-5	0.187	INTERGENIC
3R	8624949	3R_8624949_DEL [dm3] 3R_12799227_DEL [dm6]	TA	T	4.025e^-5	0.187	INTERGENIC
3L	7968938	3L_7968938_SNP [dm3] 3L_7975838_SNP [dm6]	G	A	4.031e^-5	0.187	SYNONYMOUS_CODING HP4 UPSTREAM CG8042 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	12949042	3L_12949042_SNP [dm3] 3L_12955942_SNP [dm6]	G	T	4.058e^-5	0.187	INTERGENIC	TF binding site mE1_TFBS_inv
3L	12071530	3L_12071530_SNP [dm3] 3L_12078430_SNP [dm6]	T	G	4.075e^-5	0.187	INTRON Sema-5c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8345744	X_8345744_SNP [dm3] X_8451711_SNP [dm6]	G	T	4.083e^-5	0.187	SYNONYMOUS_CODING org-1	TF binding site mE1_TFBS_cad
3L	7769607	3L_7769607_SNP [dm3] 3L_7776507_SNP [dm6]	C	T	4.140e^-5	0.187	UPSTREAM Clk DOWNSTREAM CG32369 INTERGENIC	regulatory region REDfly_CRMs
3L	14544768	3L_14544768_SNP [dm3] 3L_14551668_SNP [dm6]	C	A	4.148e^-5	0.187	UPSTREAM CG9238 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	11830645	X_11830645_DEL [dm3] X_11936612_DEL [dm6]	TTGATGCTTGCATATATCCC...	CTGATGCAGT	4.157e^-5	0.187	INTRON cac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11830641	X_11830641_SNP [dm3] X_11936608_SNP [dm6]	C	T	4.176e^-5	0.187	INTRON cac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9348695	2L_9348695_SNP [dm3] 2L_9348695_SNP [dm6]	A	T	4.224e^-5	0.187	UPSTREAM CG43350 DOWNSTREAM CR44802 INTERGENIC
3L	12071532	3L_12071532_SNP [dm3] 3L_12078432_SNP [dm6]	G	A	4.239e^-5	0.187	INTRON Sema-5c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10604874	3L_10604874_INS [dm3] 3L_10611774_INS [dm6]	T	TATATA	4.240e^-5	0.187	INTERGENIC
3L	10604876	3L_10604876_SNP [dm3] 3L_10611776_SNP [dm6]	G	A	4.240e^-5	0.187	INTERGENIC
3L	10604877	3L_10604877_SNP [dm3] 3L_10611777_SNP [dm6]	C	T	4.240e^-5	0.187	INTERGENIC
3L	10604879	3L_10604879_SNP [dm3] 3L_10611779_SNP [dm6]	G	A	4.240e^-5	0.187	INTERGENIC
3L	10604880	3L_10604880_SNP [dm3] 3L_10611780_SNP [dm6]	A	T	4.240e^-5	0.187	INTERGENIC
3L	10604882	3L_10604882_SNP [dm3] 3L_10611782_SNP [dm6]	C	T	4.240e^-5	0.187	INTERGENIC
2R	8649185	2R_8649185_SNP [dm3] 2R_12761680_SNP [dm6]	T	C	4.241e^-5	0.187	UPSTREAM Nacalpha & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	6338401	3L_6338401_SNP [dm3] 3L_6345301_SNP [dm6]	T	C	4.245e^-5	0.187	INTRON CG13300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9966999	2R_9966999_INS [dm3] 2R_14079494_INS [dm6]	T	TAGTTAAAGT	4.252e^-5	0.187	INTRON Prosap
2L	18954116	2L_18954116_SNP [dm3] 2L_18954116_SNP [dm6]	A	T	4.255e^-5	0.187	UPSTREAM CR44741 INTRON CG10621
2L	11693755	2L_11693755_SNP [dm3] 2L_11693755_SNP [dm6]	T	C	4.261e^-5	0.187	INTERGENIC	TF binding site mE1_TFBS_inv
2L	4404734	2L_4404734_SNP [dm3] 2L_4404734_SNP [dm6]	G	T	4.262e^-5	0.187	UTR_3_PRIME CG15431 DOWNSTREAM Dim1
X	20465716	X_20465716_SNP [dm3] X_20594689_SNP [dm6]	G	T	4.278e^-5	0.187	INTRON RunxA
2L	4177422	2L_4177422_SNP [dm3] 2L_4177422_SNP [dm6]	A	G	4.285e^-5	0.187	INTERGENIC
2L	6492912	2L_6492912_SNP [dm3] 2L_6492912_SNP [dm6]	G	A	4.286e^-5	0.187	DOWNSTREAM CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad
3L	20429433	3L_20429433_SNP [dm3] 3L_20436333_SNP [dm6]	C	T	4.334e^-5	0.189	UTR_5_PRIME CG5872 UPSTREAM mRpL15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	7769918	2L_7769918_SNP [dm3] 2L_7769918_SNP [dm6]	G	T	4.352e^-5	0.189	INTRON CG7191
2L	7769936	2L_7769936_SNP [dm3] 2L_7769936_SNP [dm6]	G	A	4.366e^-5	0.189	INTRON CG7191
3L	8509459	3L_8509459_SNP [dm3] 3L_8516359_SNP [dm6]	G	A	4.387e^-5	0.19	SYNONYMOUS_CODING CG6765	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4512891	3L_4512891_SNP [dm3] 3L_4512891_SNP [dm6]	A	G	4.406e^-5	0.19	INTRON Tie	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12315060	3L_12315060_SNP [dm3] 3L_12321960_SNP [dm6]	T	C	4.414e^-5	0.19	INTERGENIC
2R	5137338	2R_5137338_SNP [dm3] 2R_9249833_SNP [dm6]	G	T	4.430e^-5	0.19	INTERGENIC
2R	18711351	2R_18711351_SNP [dm3] 2R_22823828_SNP [dm6]	C	T	4.449e^-5	0.19	INTRON CG42284
2R	18711376	2R_18711376_SNP [dm3] 2R_22823853_SNP [dm6]	G	T	4.449e^-5	0.19	INTRON CG42284
3L	11575268	3L_11575268_SNP [dm3] 3L_11582168_SNP [dm6]	A	C	4.478e^-5	0.191	UTR_5_PRIME CG33269 DOWNSTREAM CG32086
2L	1200790	2L_1200790_SNP [dm3] 2L_1200790_SNP [dm6]	G	T	4.500e^-5	0.191	UTR_5_PRIME CG5011 DOWNSTREAM CG43348 & 1 other
2L	11192334	2L_11192334_SNP [dm3] 2L_11192334_SNP [dm6]	T	A	4.508e^-5	0.191	INTRON Ca-beta
3R	4384099	3R_4384099_INS [dm3] 3R_8558377_INS [dm6]	C	CTC	4.518e^-5	0.191	INTERGENIC
2R	15548907	2R_15548907_SNP [dm3] 2R_19661402_SNP [dm6]	C	A	4.533e^-5	0.192	UPSTREAM mir-6-3 & 4 others DOWNSTREAM mir-286 & 2 others EXON CR44504	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7764060	3L_7764060_SNP [dm3] 3L_7770960_SNP [dm6]	C	T	4.545e^-5	0.192	INTRON Clk	regulatory region REDfly_CRMs
2L	5758907	2L_5758907_SNP [dm3] 2L_5758907_SNP [dm6]	T	C	4.559e^-5	0.192	SYNONYMOUS_CODING CG11030	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20851980	3R_20851980_SNP [dm3] 3R_25026258_SNP [dm6]	G	T	4.576e^-5	0.192	INTRON Hr96	TF binding site BDTNP1_TFBS_dl
2L	6280765	2L_6280765_SNP [dm3] 2L_6280765_SNP [dm6]	G	T	4.583e^-5	0.192	INTRON Ddr
3L	6442032	3L_6442032_SNP [dm3] 3L_6448932_SNP [dm6]	T	A	4.583e^-5	0.192	INTRON CG42747
2L	4713034	2L_4713034_SNP [dm3] 2L_4713034_SNP [dm6]	T	A	4.640e^-5	0.193	INTRON CG34351
3L	11252358	3L_11252358_SNP [dm3] 3L_11259258_SNP [dm6]	G	T	4.644e^-5	0.193	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	12845598	3R_12845598_SNP [dm3] 3R_17019876_SNP [dm6]	C	T	4.677e^-5	0.193	SYNONYMOUS_CODING AdSL INTRON Pxd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18024352	2R_18024352_SNP [dm3] 2R_22136847_SNP [dm6]	A	T	4.679e^-5	0.193	UPSTREAM a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5195131	3L_5195131_SNP [dm3] 3L_5202031_SNP [dm6]	T	C	4.689e^-5	0.193	UPSTREAM shep INTRON shep
3L	5197114	3L_5197114_SNP [dm3] 3L_5204014_SNP [dm6]	C	T	4.689e^-5	0.193	INTRON shep
X	6336911	X_6336911_SNP [dm3] X_6442878_SNP [dm6]	G	T	4.717e^-5	0.193	INTRON CG42340
2R	9310396	2R_9310396_SNP [dm3] 2R_13422891_SNP [dm6]	T	A	4.720e^-5	0.193	DOWNSTREAM CG30060 INTRON CG42321
3R	20849148	3R_20849148_SNP [dm3] 3R_25023426_SNP [dm6]	G	A	4.734e^-5	0.193	SYNONYMOUS_CODING beta4GalT7 DOWNSTREAM tnc
2R	14475952	2R_14475952_SNP [dm3] 2R_18588447_SNP [dm6]	G	A	4.743e^-5	0.193	INTRON GEFmeso	TF binding site mE1_TFBS_chinmo
2R	14477852	2R_14477852_SNP [dm3] 2R_18590347_SNP [dm6]	A	C	4.743e^-5	0.193	INTRON GEFmeso
2R	17806497	2R_17806497_SNP [dm3] 2R_21918992_SNP [dm6]	T	A	4.743e^-5	0.193	INTRON Fili
2R	7684625	2R_7684625_SNP [dm3] 2R_11797120_SNP [dm6]	C	A	4.743e^-5	0.193	INTRON ths	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_sens
X	4859128	X_4859128_SNP [dm3] X_4965095_SNP [dm6]	A	T	4.755e^-5	0.193	INTRON CR44833
2R	18889162	2R_18889162_SNP [dm3] 2R_23001639_SNP [dm6]	A	C	4.773e^-5	0.193	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	9109651	2L_9109651_SNP [dm3] 2L_9109651_SNP [dm6]	A	G	4.797e^-5	0.194	INTERGENIC
3R	12874161	3R_12874161_SNP [dm3] 3R_17048439_SNP [dm6]	C	A	4.819e^-5	0.194	DOWNSTREAM Patr-1 INTERGENIC	TF binding site mE1_TFBS_kn
2R	8649196	2R_8649196_SNP [dm3] 2R_12761691_SNP [dm6]	T	C	4.825e^-5	0.194	UPSTREAM Nacalpha & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	4314171	2L_4314171_SNP [dm3] 2L_4314171_SNP [dm6]	T	C	4.826e^-5	0.194	INTRON tutl
3L	16867231	3L_16867231_SNP [dm3] 3L_16874131_SNP [dm6]	T	A	4.927e^-5	0.196	INTRON Lmpt
3R	21030929	3R_21030929_SNP [dm3] 3R_25205207_SNP [dm6]	T	G	4.932e^-5	0.196	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
3R	20851472	3R_20851472_SNP [dm3] 3R_25025750_SNP [dm6]	T	G	4.960e^-5	0.196	NON_SYNONYMOUS_CODING Hr96 UPSTREAM CG11781	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	9990318	2L_9990318_SNP [dm3] 2L_9990318_SNP [dm6]	G	T	4.962e^-5	0.196	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	1310195	2R_1310195_SNP [dm3] 2R_5422690_SNP [dm6]	C	A	4.975e^-5	0.196	INTRON laccase2
2R	1310842	2R_1310842_SNP [dm3] 2R_5423337_SNP [dm6]	G	C	4.975e^-5	0.196	INTRON laccase2	transposable element FlyBase
3R	26610383	3R_26610383_SNP [dm3] 3R_30784661_SNP [dm6]	T	G	4.979e^-5	0.196	NON_SYNONYMOUS_CODING zfh1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16603722	X_16603722_SNP [dm3] X_16709689_SNP [dm6]	C	T	4.985e^-5	0.196	INTRON CG4678	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16603733	X_16603733_SNP [dm3] X_16709700_SNP [dm6]	A	T	4.985e^-5	0.196	INTRON CG4678	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11591784	3L_11591784_SNP [dm3] 3L_11598684_SNP [dm6]	G	T	4.993e^-5	0.196	DOWNSTREAM CG14137 INTRON CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Kr
3R	8624714	3R_8624714_SNP [dm3] 3R_12798992_SNP [dm6]	C	A	5.030e^-5	0.197	INTERGENIC
3L	12451867	3L_12451867_SNP [dm3] 3L_12458767_SNP [dm6]	G	C	5.042e^-5	0.197	INTERGENIC
2R	20518556	2R_20518556_DEL [dm3] 2R_24631033_DEL [dm6]	TAT	T	5.052e^-5	0.197	UPSTREAM Cyp9c1 INTRON CG13594 EXON CR43787
3L	12306884	3L_12306884_SNP [dm3] 3L_12313784_SNP [dm6]	C	T	5.083e^-5	0.198	INTERGENIC
2R	1318478	2R_1318478_SNP [dm3] 2R_5430973_SNP [dm6]	A	C	5.092e^-5	0.198	INTRON laccase2	transposable element FlyBase
2R	11845302	2R_11845302_SNP [dm3] 2R_15957797_SNP [dm6]	C	T	5.170e^-5	0.2	UPSTREAM Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4794032	3R_4794032_SNP [dm3] 3R_8968310_SNP [dm6]	C	G	5.183e^-5	0.2	INTERGENIC
3R	20851901	3R_20851901_SNP [dm3] 3R_25026179_SNP [dm6]	A	G	5.186e^-5	0.2	SYNONYMOUS_CODING Hr96	TF binding site BDTNP1_TFBS_sna
2R	12021682	2R_12021682_DEL [dm3] 2R_16134177_DEL [dm6]	AA	A	5.223e^-5	0.2	INTRON spin	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7768178	3L_7768178_SNP [dm3] 3L_7775078_SNP [dm6]	A	T	5.224e^-5	0.2	INTRON Clk	regulatory region REDfly_CRMs
3L	2049526	3L_2049526_SNP [dm3] 3L_2049526_SNP [dm6]	G	C	5.236e^-5	0.2	NON_SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_sens
3L	2049901	3L_2049901_SNP [dm3] 3L_2049901_SNP [dm6]	C	T	5.236e^-5	0.2	SYNONYMOUS_CODING sls
3L	2050509	3L_2050509_SNP [dm3] 3L_2050509_SNP [dm6]	G	A	5.236e^-5	0.2	SYNONYMOUS_CODING sls
3L	2051798	3L_2051798_SNP [dm3] 3L_2051798_SNP [dm6]	G	T	5.236e^-5	0.2	NON_SYNONYMOUS_CODING sls
2L	8593920	2L_8593920_SNP [dm3] 2L_8593920_SNP [dm6]	G	A	5.248e^-5	0.2	INTRON Sema-1a & 1 other
3L	14424355	3L_14424355_SNP [dm3] 3L_14431255_SNP [dm6]	C	A	5.319e^-5	0.202	INTRON bbg
3L	16886087	3L_16886087_SNP [dm3] 3L_16892987_SNP [dm6]	A	G	5.341e^-5	0.202	INTRON Lmpt
3L	20425273	3L_20425273_SNP [dm3] 3L_20432173_SNP [dm6]	A	T	5.344e^-5	0.202	UPSTREAM Psn INTRON Las	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4185087	2L_4185087_SNP [dm3] 2L_4185087_SNP [dm6]	T	G	5.350e^-5	0.202	UPSTREAM CR44057 INTERGENIC
2L	8785534	2L_8785534_SNP [dm3] 2L_8785534_SNP [dm6]	T	C	5.365e^-5	0.202	INTERGENIC
3L	7767902	3L_7767902_SNP [dm3] 3L_7774802_SNP [dm6]	T	C	5.401e^-5	0.203	INTRON Clk	regulatory region REDfly_CRMs
3L	13278977	3L_13278977_MNP [dm3] 3L_13285877_MNP [dm6]	AGGC	GAAG	5.417e^-5	0.203	UPSTREAM CR45752 DOWNSTREAM CR45753 INTERGENIC
2R	19400087	2R_19400087_SNP [dm3] 2R_23512564_SNP [dm6]	T	C	5.422e^-5	0.203	UPSTREAM CG3906 INTERGENIC
3L	5196718	3L_5196718_SNP [dm3] 3L_5203618_SNP [dm6]	T	A	5.491e^-5	0.205	INTRON shep
2L	1200786	2L_1200786_SNP [dm3] 2L_1200786_SNP [dm6]	C	A	5.504e^-5	0.205	UTR_5_PRIME CG5011 DOWNSTREAM CG43348 & 1 other
2L	10866981	2L_10866981_SNP [dm3] 2L_10866981_SNP [dm6]	T	A	5.521e^-5	0.205	INTERGENIC
2L	14949637	2L_14949637_SNP [dm3] 2L_14949637_SNP [dm6]	A	T	5.570e^-5	0.207	INTRON CG42313
3R	12841366	3R_12841366_SNP [dm3] 3R_17015644_SNP [dm6]	T	C	5.592e^-5	0.207	UPSTREAM Pxd INTRON Pxd
2R	14291598	2R_14291598_SNP [dm3] 2R_18404093_SNP [dm6]	T	C	5.706e^-5	0.21	UPSTREAM GstE5 DOWNSTREAM GstE4 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	10858848	2R_10858848_SNP [dm3] 2R_14971343_SNP [dm6]	T	C	5.719e^-5	0.21	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10858862	2R_10858862_SNP [dm3] 2R_14971357_SNP [dm6]	A	T	5.719e^-5	0.21	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7684759	2R_7684759_SNP [dm3] 2R_11797254_SNP [dm6]	T	C	5.725e^-5	0.21	INTRON ths	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	7684766	2R_7684766_SNP [dm3] 2R_11797261_SNP [dm6]	C	T	5.725e^-5	0.21	INTRON ths	TF binding site mE1_TFBS_inv mE1_TFBS_sens
X	16603735	X_16603735_SNP [dm3] X_16709702_SNP [dm6]	A	C	5.769e^-5	0.211	INTRON CG4678	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17906848	2L_17906848_SNP [dm3] 2L_17906848_SNP [dm6]	T	G	5.774e^-5	0.211	INTERGENIC
3R	6195293	3R_6195293_SNP [dm3] 3R_10369571_SNP [dm6]	A	G	5.855e^-5	0.211	INTRON Rfx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	7442693	X_7442693_SNP [dm3] X_7548660_SNP [dm6]	A	C	5.857e^-5	0.211	UPSTREAM CG32719 INTERGENIC	TF binding site BDTNP1_TFBS_hb
X	16603744	X_16603744_SNP [dm3] X_16709711_SNP [dm6]	T	C	5.868e^-5	0.211	INTRON CG4678	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20081556	2L_20081556_SNP [dm3] 2L_20081556_SNP [dm6]	T	A	5.869e^-5	0.211	DOWNSTREAM fok INTRON neb & 1 other
2R	18852350	2R_18852350_SNP [dm3] 2R_22964827_SNP [dm6]	G	A	5.869e^-5	0.211	INTERGENIC
3R	27027413	3R_27027413_SNP [dm3] 3R_31201691_SNP [dm6]	C	A	5.874e^-5	0.211	SYNONYMOUS_CODING CG1544	TF binding site mE1_TFBS_cad
2R	20407010	2R_20407010_SNP [dm3] 2R_24519487_SNP [dm6]	G	A	5.888e^-5	0.211	NON_SYNONYMOUS_CODING Ir60d DOWNSTREAM Ir60c	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15095474	2R_15095474_SNP [dm3] 2R_19207969_SNP [dm6]	A	G	5.892e^-5	0.211	INTRON hppy
3L	5005850	3L_5005850_SNP [dm3] 3L_5005850_SNP [dm6]	C	T	5.892e^-5	0.211	INTRON Con
3L	5896958	3L_5896958_SNP [dm3] 3L_5903858_SNP [dm6]	C	T	5.898e^-5	0.211	SYNONYMOUS_CODING CG32413 DOWNSTREAM CG10486
3L	7609930	3L_7609930_INS [dm3] 3L_7616830_INS [dm6]	T	TAAATAAATGTGTTAT...	5.913e^-5	0.212	INTRON CG33275
2R	5317459	2R_5317459_SNP [dm3] 2R_9429954_SNP [dm6]	T	A	5.937e^-5	0.212	INTRON Pdk
2R	1310843	2R_1310843_SNP [dm3] 2R_5423338_SNP [dm6]	G	T	5.964e^-5	0.213	INTRON laccase2	transposable element FlyBase
2L	12286238	2L_12286238_SNP [dm3] 2L_12286238_SNP [dm6]	G	A	5.976e^-5	0.213	UPSTREAM aret INTRON aret
3L	13279373	3L_13279373_SNP [dm3] 3L_13286273_SNP [dm6]	T	C	5.988e^-5	0.213	UPSTREAM CR45752 DOWNSTREAM CR45753 INTERGENIC
2L	7906722	2L_7906722_SNP [dm3] 2L_7906722_SNP [dm6]	T	C	6.017e^-5	0.213	INTRON Snoo
3L	11842268	3L_11842268_SNP [dm3] 3L_11849168_SNP [dm6]	T	C	6.055e^-5	0.214	INTERGENIC
2L	13717053	2L_13717053_SNP [dm3] 2L_13717053_SNP [dm6]	G	A	6.063e^-5	0.214	UTR_5_PRIME CG31814
3R	25155029	3R_25155029_SNP [dm3] 3R_29329307_SNP [dm6]	T	C	6.072e^-5	0.214	INTERGENIC
2R	9967029	2R_9967029_SNP [dm3] 2R_14079524_SNP [dm6]	G	A	6.096e^-5	0.214	INTRON Prosap
2L	7770100	2L_7770100_SNP [dm3] 2L_7770100_SNP [dm6]	T	A	6.108e^-5	0.214	INTRON CG7191
2L	4185118	2L_4185118_SNP [dm3] 2L_4185118_SNP [dm6]	T	G	6.108e^-5	0.214	UPSTREAM CR44057 INTERGENIC
X	3671977	X_3671977_DEL [dm3] X_3777944_DEL [dm6]	AA	A	6.125e^-5	0.214	DOWNSTREAM mir-4962 INTRON tlk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2R	8588525	2R_8588525_SNP [dm3] 2R_12701020_SNP [dm6]	T	G	6.132e^-5	0.214	DOWNSTREAM wuc INTERGENIC
2L	15119107	2L_15119107_SNP [dm3] 2L_15119107_SNP [dm6]	G	A	6.168e^-5	0.214	UPSTREAM CR43853 INTERGENIC
3L	2051149	3L_2051149_SNP [dm3] 3L_2051149_SNP [dm6]	C	T	6.170e^-5	0.214	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2051605	3L_2051605_SNP [dm3] 3L_2051605_SNP [dm6]	T	C	6.170e^-5	0.214	SYNONYMOUS_CODING sls
3R	8567168	3R_8567168_SNP [dm3] 3R_12741446_SNP [dm6]	A	G	6.185e^-5	0.214	DOWNSTREAM CG5999 & 1 other INTERGENIC
3R	21028539	3R_21028539_SNP [dm3] 3R_25202817_SNP [dm6]	T	A	6.197e^-5	0.214	INTRON CG13654 & 1 other
2R	17087214	2R_17087214_SNP [dm3] 2R_21199709_SNP [dm6]	C	T	6.228e^-5	0.214	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	17087273	2R_17087273_SNP [dm3] 2R_21199768_SNP [dm6]	C	T	6.228e^-5	0.214	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	17087283	2R_17087283_SNP [dm3] 2R_21199778_SNP [dm6]	T	G	6.228e^-5	0.214	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	13411447	3R_13411447_SNP [dm3] 3R_17585725_SNP [dm6]	T	G	6.283e^-5	0.215	INTERGENIC
3R	13411481	3R_13411481_SNP [dm3] 3R_17585759_SNP [dm6]	A	T	6.283e^-5	0.215	INTERGENIC
3R	13411483	3R_13411483_SNP [dm3] 3R_17585761_SNP [dm6]	T	C	6.283e^-5	0.215	INTERGENIC
3L	17174497	3L_17174497_SNP [dm3] 3L_17181397_SNP [dm6]	G	C	6.296e^-5	0.215	INTRON Rbp6
2R	11587170	2R_11587170_SNP [dm3] 2R_15699665_SNP [dm6]	A	T	6.327e^-5	0.216	UPSTREAM CG42662 INTRON CG30080 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15207702	2R_15207702_INS [dm3] 2R_19320197_INS [dm6]	A	ACATTACA	6.337e^-5	0.216	INTRON Rgk1
3R	12938587	3R_12938587_SNP [dm3] 3R_17112865_SNP [dm6]	T	G	6.429e^-5	0.218	INTRON cher	TF binding site mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
X	22058620	X_22058620_SNP [dm3] X_22656784_SNP [dm6]	A	G	6.468e^-5	0.219	UPSTREAM CR44997 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4210658	3R_4210658_SNP [dm3] 3R_8384936_SNP [dm6]	C	A	6.574e^-5	0.222	UTR_3_PRIME CG45263 INTRON CG45263	TF binding site mE1_TFBS_cad
2R	8341586	2R_8341586_DEL [dm3] 2R_12454081_DEL [dm6]	GATTATCTTGGGTTACGCTG...	G	6.599e^-5	0.222	INTRON Lac	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8339854	X_8339854_SNP [dm3] X_8445821_SNP [dm6]	C	A	6.601e^-5	0.222	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16480090	2L_16480090_SNP [dm3] 2L_16480090_SNP [dm6]	G	C	6.619e^-5	0.222	INTRON dac
X	3461435	X_3461435_SNP [dm3] X_3567402_SNP [dm6]	A	T	6.625e^-5	0.222	INTRON CG32791 & 1 other
X	11874410	X_11874410_SNP [dm3] X_11980377_SNP [dm6]	A	C	6.626e^-5	0.222	INTRON cac
X	3743275	X_3743275_SNP [dm3] X_3849242_SNP [dm6]	T	G	6.674e^-5	0.223	INTRON ec	TF binding site BDTNP1_TFBS_dl
3R	8625990	3R_8625990_SNP [dm3] 3R_12800268_SNP [dm6]	A	G	6.722e^-5	0.225	INTERGENIC
2R	1316513	2R_1316513_SNP [dm3] 2R_5429008_SNP [dm6]	G	A	6.733e^-5	0.225	INTRON laccase2	transposable element FlyBase
2R	14856308	2R_14856308_SNP [dm3] 2R_18968803_SNP [dm6]	C	T	6.751e^-5	0.225	DOWNSTREAM prod INTERGENIC	TF binding site mE1_TFBS_sens
3R	13411480	3R_13411480_SNP [dm3] 3R_17585758_SNP [dm6]	C	A	6.869e^-5	0.228	INTERGENIC
2R	15206277	2R_15206277_SNP [dm3] 2R_19318772_SNP [dm6]	A	G	6.881e^-5	0.228	INTRON Rgk1
2L	20067018	2L_20067018_SNP [dm3] 2L_20067018_SNP [dm6]	T	G	6.892e^-5	0.228	INTRON bwa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13279117	3L_13279117_SNP [dm3] 3L_13286017_SNP [dm6]	T	C	6.926e^-5	0.229	UPSTREAM CR45752 DOWNSTREAM CR45753 INTERGENIC
3L	20824431	3L_20824431_SNP [dm3] 3L_20831331_SNP [dm6]	T	C	6.965e^-5	0.23	INTRON Pka-R1
3L	12315471	3L_12315471_SNP [dm3] 3L_12322371_SNP [dm6]	C	T	6.995e^-5	0.23	INTERGENIC
2L	1868710	2L_1868710_SNP [dm3] 2L_1868710_SNP [dm6]	G	A	7.011e^-5	0.23	INTRON CG31663
3L	14575781	3L_14575781_SNP [dm3] 3L_14582681_SNP [dm6]	C	T	7.026e^-5	0.231	DOWNSTREAM HGTX INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_tll mE1_TFBS_HSA
2L	5626224	2L_5626224_SNP [dm3] 2L_5626224_SNP [dm6]	A	C	7.076e^-5	0.232	DOWNSTREAM CG31646 INTERGENIC
2L	9888214	2L_9888214_SNP [dm3] 2L_9888214_SNP [dm6]	G	A	7.170e^-5	0.233	SYNONYMOUS_CODING FKBP59 DOWNSTREAM CR44701	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	9347789	2L_9347789_SNP [dm3] 2L_9347789_SNP [dm6]	G	A	7.172e^-5	0.233	DOWNSTREAM CR44802 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	10855187	2R_10855187_SNP [dm3] 2R_14967682_SNP [dm6]	T	C	7.176e^-5	0.233	INTRON ckn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15253944	3L_15253944_INS [dm3] 3L_15260844_INS [dm6]	A	AAATTCA	7.178e^-5	0.233	INTERGENIC	TF binding site mE1_TFBS_cad
2L	4043080	2L_4043080_DEL [dm3] 2L_4043080_DEL [dm6]	CC	C	7.189e^-5	0.233	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5178954	X_5178954_SNP [dm3] X_5284921_SNP [dm6]	T	C	7.198e^-5	0.233	INTERGENIC
3L	8859467	3L_8859467_SNP [dm3] 3L_8866367_SNP [dm6]	A	G	7.208e^-5	0.233	INTRON dally
2R	17087333	2R_17087333_SNP [dm3] 2R_21199828_SNP [dm6]	C	T	7.227e^-5	0.233	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	17087360	2R_17087360_SNP [dm3] 2R_21199855_SNP [dm6]	T	A	7.227e^-5	0.233	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	9356415	3L_9356415_SNP [dm3] 3L_9363315_SNP [dm6]	T	G	7.243e^-5	0.233	NON_SYNONYMOUS_CODING Klp67A DOWNSTREAM CG34456 INTRON Klp67A
3L	6168121	3L_6168121_SNP [dm3] 3L_6175021_SNP [dm6]	C	T	7.250e^-5	0.233	SYNONYMOUS_CODING CG7376	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1281672	2L_1281672_SNP [dm3] 2L_1281672_SNP [dm6]	C	T	7.256e^-5	0.233	INTRON robo3
2R	19365668	2R_19365668_SNP [dm3] 2R_23478145_SNP [dm6]	G	A	7.267e^-5	0.233	UPSTREAM CR43793 INTRON CG43795
X	3360169	X_3360169_SNP [dm3] X_3466136_SNP [dm6]	A	T	7.293e^-5	0.233	SYNONYMOUS_CODING CG12206 INTRON CR44999
2L	16447593	2L_16447593_SNP [dm3] 2L_16447593_SNP [dm6]	G	A	7.313e^-5	0.233	DOWNSTREAM Idgf1 INTRON CG5888 & 1 other
3L	15193564	3L_15193564_SNP [dm3] 3L_15200464_SNP [dm6]	A	G	7.314e^-5	0.233	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2L	10451494	2L_10451494_SNP [dm3] 2L_10451494_SNP [dm6]	G	T	7.379e^-5	0.234	SYNONYMOUS_CODING ppk10
2L	21716233	2L_21716233_INS [dm3] 2L_21716233_INS [dm6]	A	AATGGG	7.385e^-5	0.234	INTRON CG31619
2L	21716235	2L_21716235_SNP [dm3] 2L_21716235_SNP [dm6]	C	A	7.385e^-5	0.234	INTRON CG31619
3L	14068781	3L_14068781_SNP [dm3] 3L_14075681_SNP [dm6]	A	C	7.440e^-5	0.235	UPSTREAM btl INTRON Pex1	TF binding site BDTNP1_TFBS_dl
2R	9967024	2R_9967024_SNP [dm3] 2R_14079519_SNP [dm6]	A	T	7.443e^-5	0.235	INTRON Prosap
2L	16401636	2L_16401636_SNP [dm3] 2L_16401636_SNP [dm6]	T	C	7.451e^-5	0.235	INTRON CG5888
3L	12060451	3L_12060451_SNP [dm3] 3L_12067351_SNP [dm6]	T	G	7.465e^-5	0.235	DOWNSTREAM Sema-5c INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn
2L	4974632	2L_4974632_SNP [dm3] 2L_4974632_SNP [dm6]	G	C	7.472e^-5	0.235	NON_SYNONYMOUS_CODING mRpL28 UPSTREAM l_2_05714 DOWNSTREAM CG14043 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	8549107	2R_8549107_SNP [dm3] 2R_12661602_SNP [dm6]	G	A	7.505e^-5	0.235	UTR_5_PRIME nemy INTRON nemy
2L	14624349	2L_14624349_SNP [dm3] 2L_14624349_SNP [dm6]	A	T	7.518e^-5	0.235	INTRON osp
3L	16737665	3L_16737665_SNP [dm3] 3L_16744565_SNP [dm6]	T	A	7.521e^-5	0.235	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	2721942	3L_2721942_SNP [dm3] 3L_2721942_SNP [dm6]	C	T	7.532e^-5	0.235	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1925368	3L_1925368_SNP [dm3] 3L_1925368_SNP [dm6]	T	A	7.580e^-5	0.236	UPSTREAM tRNA:CR32312 INTRON Dbx	TF binding site mE1_TFBS_chinmo
2R	8618771	2R_8618771_SNP [dm3] 2R_12731266_SNP [dm6]	G	C	7.585e^-5	0.236	INTRON CG42663	TF binding site BDTNP1_TFBS_dl
2R	18889150	2R_18889150_SNP [dm3] 2R_23001627_SNP [dm6]	G	A	7.587e^-5	0.236	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	17806329	2R_17806329_SNP [dm3] 2R_21918824_SNP [dm6]	G	T	7.628e^-5	0.236	INTRON Fili
2R	14928942	2R_14928942_SNP [dm3] 2R_19041437_SNP [dm6]	C	T	7.637e^-5	0.236	INTERGENIC
2L	14067465	2L_14067465_SNP [dm3] 2L_14067465_SNP [dm6]	C	T	7.648e^-5	0.236	INTRON nAChRalpha5
2L	20702247	2L_20702247_SNP [dm3] 2L_20702247_SNP [dm6]	G	T	7.675e^-5	0.237	INTRON Hr38
3L	18606241	3L_18606241_SNP [dm3] 3L_18613141_SNP [dm6]	A	T	7.720e^-5	0.238	SYNONYMOUS_CODING CG32199 INTRON CG4174 & 1 other	TF binding site mE1_TFBS_HSA
3L	2295563	3L_2295563_SNP [dm3] 3L_2295563_SNP [dm6]	G	C	7.758e^-5	0.238	INTRON MsR2
2L	7655176	2L_7655176_SNP [dm3] 2L_7655176_SNP [dm6]	C	T	7.761e^-5	0.238	SYNONYMOUS_CODING Slob INTRON Slob
2L	10869118	2L_10869118_SNP [dm3] 2L_10869118_SNP [dm6]	A	C	7.793e^-5	0.238	INTERGENIC
3L	10604885	3L_10604885_SNP [dm3] 3L_10611785_SNP [dm6]	C	A	7.797e^-5	0.238	INTERGENIC
2L	10088402	2L_10088402_SNP [dm3] 2L_10088402_SNP [dm6]	G	A	7.805e^-5	0.238	INTRON CG44153	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3399036	2R_3399036_SNP [dm3] 2R_7511531_SNP [dm6]	C	G	7.815e^-5	0.238	NON_SYNONYMOUS_CODING az2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9348684	2L_9348684_SNP [dm3] 2L_9348684_SNP [dm6]	A	C	7.820e^-5	0.238	UPSTREAM CG43350 DOWNSTREAM CR44802 INTERGENIC
2R	11587169	2R_11587169_SNP [dm3] 2R_15699664_SNP [dm6]	T	A	7.842e^-5	0.238	UPSTREAM CG42662 INTRON CG30080 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12073182	3L_12073182_SNP [dm3] 3L_12080082_SNP [dm6]	A	G	7.874e^-5	0.239	INTRON Sema-5c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	14199249	3L_14199249_INS [dm3] 3L_14206149_INS [dm6]	GTGTAGGGT	ACAAGTTACACAC...	7.877e^-5	0.239	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14484792	3L_14484792_SNP [dm3] 3L_14491692_SNP [dm6]	T	A	7.929e^-5	0.24	INTRON bbg	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	6973959	2L_6973959_SNP [dm3] 2L_6973959_SNP [dm6]	A	G	7.932e^-5	0.24	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	8788108	2R_8788108_SNP [dm3] 2R_12900603_SNP [dm6]	T	A	7.974e^-5	0.24	INTERGENIC
2R	8788165	2R_8788165_SNP [dm3] 2R_12900660_SNP [dm6]	T	G	7.974e^-5	0.24	INTERGENIC
2R	19518382	2R_19518382_SNP [dm3] 2R_23630859_SNP [dm6]	G	T	8.035e^-5	0.241	INTERGENIC
3L	7765858	3L_7765858_SNP [dm3] 3L_7772758_SNP [dm6]	C	T	8.046e^-5	0.241	INTRON Clk	regulatory region REDfly_CRMs
3L	7765859	3L_7765859_SNP [dm3] 3L_7772759_SNP [dm6]	G	C	8.046e^-5	0.241	INTRON Clk	regulatory region REDfly_CRMs
2L	15409309	2L_15409309_SNP [dm3] 2L_15409309_SNP [dm6]	A	T	8.069e^-5	0.241	INTERGENIC
2R	1387266	2R_1387266_SNP [dm3] 2R_5499761_SNP [dm6]	C	A	8.105e^-5	0.242	INTRON CG30438
2L	4981973	2L_4981973_DEL [dm3] 2L_4981973_DEL [dm6]	TATTT	T	8.109e^-5	0.242	UTR_5_PRIME CG34126 UPSTREAM CG8892	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	14619879	2L_14619879_SNP [dm3] 2L_14619879_SNP [dm6]	T	G	8.124e^-5	0.242	DOWNSTREAM Adhr & 1 other INTRON osp
3R	9769762	3R_9769762_INS [dm3] 3R_13944040_INS [dm6]	T	ATTTGTCTGGGAC...	8.153e^-5	0.242	UPSTREAM Art9 DOWNSTREAM Art6 INTERGENIC	TF binding site mE1_TFBS_cad
3L	14539193	3L_14539193_SNP [dm3] 3L_14546093_SNP [dm6]	T	A	8.178e^-5	0.243	INTRON CG9238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8364374	3R_8364374_SNP [dm3] 3R_12538652_SNP [dm6]	A	G	8.250e^-5	0.244	INTRON Octbeta3R
3R	23167620	3R_23167620_SNP [dm3] 3R_27341898_SNP [dm6]	T	A	8.252e^-5	0.244	INTRON CG42534
2R	18711418	2R_18711418_SNP [dm3] 2R_22823895_SNP [dm6]	C	T	8.338e^-5	0.246	SYNONYMOUS_CODING CG42284
2L	1858341	2L_1858341_DEL [dm3] 2L_1858341_DEL [dm6]	ACA	A	8.368e^-5	0.247	UTR_3_PRIME wry DOWNSTREAM CG31663
3R	12851801	3R_12851801_SNP [dm3] 3R_17026079_SNP [dm6]	C	T	8.413e^-5	0.247	SYNONYMOUS_CODING Pxd
3R	19211601	3R_19211601_SNP [dm3] 3R_23385879_SNP [dm6]	T	A	8.415e^-5	0.247	INTERGENIC
3R	19211642	3R_19211642_SNP [dm3] 3R_23385920_SNP [dm6]	G	T	8.415e^-5	0.247	INTERGENIC
2R	14407348	2R_14407348_SNP [dm3] 2R_18519843_SNP [dm6]	T	C	8.435e^-5	0.247	INTRON CG43066	TF binding site mE1_TFBS_inv
3L	8439386	3L_8439386_SNP [dm3] 3L_8446286_SNP [dm6]	A	T	8.545e^-5	0.25	INTRON CG6983
2L	4853291	2L_4853291_SNP [dm3] 2L_4853291_SNP [dm6]	G	A	8.558e^-5	0.25	DOWNSTREAM Mon1 INTRON pog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20848848	3R_20848848_SNP [dm3] 3R_25023126_SNP [dm6]	T	A	8.588e^-5	0.25	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
2L	12609867	2L_12609867_SNP [dm3] 2L_12609867_SNP [dm6]	A	T	8.605e^-5	0.25	DOWNSTREAM Ref2 INTRON nub	TF binding site BDTNP1_TFBS_dl
2R	16762226	2R_16762226_SNP [dm3] 2R_20874721_SNP [dm6]	G	A	8.630e^-5	0.25	UTR_5_PRIME Ipk1 INTRON Ipk1
2R	16762272	2R_16762272_SNP [dm3] 2R_20874767_SNP [dm6]	G	T	8.630e^-5	0.25	INTRON Ipk1
2R	16764756	2R_16764756_SNP [dm3] 2R_20877251_SNP [dm6]	C	A	8.630e^-5	0.25	SPLICE_SITE_REGION Ipk1 INTRON Ipk1
3L	20431587	3L_20431587_SNP [dm3] 3L_20438487_SNP [dm6]	A	G	8.701e^-5	0.251	SYNONYMOUS_CODING CG11796 DOWNSTREAM CG5872
X	13705220	X_13705220_SNP [dm3] X_13811187_SNP [dm6]	C	T	8.725e^-5	0.251	UTR_3_PRIME inaE UPSTREAM CG11095	TF binding site BDTNP1_TFBS_dl
3L	14666476	3L_14666476_SNP [dm3] 3L_14673376_SNP [dm6]	C	T	8.763e^-5	0.251	UPSTREAM CG43121 & 1 other DOWNSTREAM tRNA:M3:70Fa INTRON ome	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	7530754	2L_7530754_SNP [dm3] 2L_7530754_SNP [dm6]	T	C	8.784e^-5	0.251	UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11925073	2L_11925073_SNP [dm3] 2L_11925073_SNP [dm6]	G	A	8.786e^-5	0.251	INTRON Pde1c
2L	14684123	2L_14684123_SNP [dm3] 2L_14684123_SNP [dm6]	T	C	8.897e^-5	0.251	INTRON osp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2L	14684183	2L_14684183_SNP [dm3] 2L_14684183_SNP [dm6]	A	G	8.897e^-5	0.251	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2L	14684221	2L_14684221_SNP [dm3] 2L_14684221_SNP [dm6]	A	T	8.897e^-5	0.251	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	14684240	2L_14684240_SNP [dm3] 2L_14684240_SNP [dm6]	A	G	8.897e^-5	0.251	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	14684249	2L_14684249_SNP [dm3] 2L_14684249_SNP [dm6]	T	G	8.897e^-5	0.251	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	14684252	2L_14684252_SNP [dm3] 2L_14684252_SNP [dm6]	C	T	8.897e^-5	0.251	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	14684262	2L_14684262_SNP [dm3] 2L_14684262_SNP [dm6]	T	C	8.897e^-5	0.251	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	14684264	2L_14684264_SNP [dm3] 2L_14684264_SNP [dm6]	G	T	8.897e^-5	0.251	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	14684307	2L_14684307_SNP [dm3] 2L_14684307_SNP [dm6]	A	T	8.897e^-5	0.251	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	14684319	2L_14684319_SNP [dm3] 2L_14684319_SNP [dm6]	T	C	8.897e^-5	0.251	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	14684329	2L_14684329_SNP [dm3] 2L_14684329_SNP [dm6]	T	A	8.897e^-5	0.251	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	14684332	2L_14684332_SNP [dm3] 2L_14684332_SNP [dm6]	C	T	8.897e^-5	0.251	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	14684335	2L_14684335_SNP [dm3] 2L_14684335_SNP [dm6]	G	A	8.897e^-5	0.251	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	15825099	2R_15825099_SNP [dm3] 2R_19937594_SNP [dm6]	C	T	8.961e^-5	0.251	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18693062	X_18693062_SNP [dm3] X_18799029_SNP [dm6]	A	C	8.988e^-5	0.251	INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7010583	3L_7010583_SNP [dm3] 3L_7017483_SNP [dm6]	A	C	8.991e^-5	0.251	INTRON Mp
2R	8618823	2R_8618823_SNP [dm3] 2R_12731318_SNP [dm6]	T	A	9.005e^-5	0.251	INTRON CG42663	TF binding site BDTNP1_TFBS_dl
2R	8618852	2R_8618852_SNP [dm3] 2R_12731347_SNP [dm6]	C	T	9.005e^-5	0.251	INTRON CG42663	TF binding site BDTNP1_TFBS_dl
2L	12624090	2L_12624090_SNP [dm3] 2L_12624090_SNP [dm6]	A	G	9.027e^-5	0.251	INTRON Ref2 & 1 other	TF binding site mE1_TFBS_HSA
3R	12848235	3R_12848235_SNP [dm3] 3R_17022513_SNP [dm6]	T	C	9.036e^-5	0.251	INTRON Pxd
3R	12851027	3R_12851027_SNP [dm3] 3R_17025305_SNP [dm6]	C	T	9.036e^-5	0.251	INTRON Pxd
X	13788691	X_13788691_SNP [dm3] X_13894658_SNP [dm6]	T	C	9.049e^-5	0.251	INTRON mamo	TF binding site mE1_TFBS_HSA
2R	6724050	2R_6724050_SNP [dm3] 2R_10836545_SNP [dm6]	C	G	9.065e^-5	0.251	UPSTREAM CG12344 DOWNSTREAM CG7686 INTERGENIC
2L	20702250	2L_20702250_SNP [dm3] 2L_20702250_SNP [dm6]	A	T	9.069e^-5	0.251	INTRON Hr38
3R	12849954	3R_12849954_SNP [dm3] 3R_17024232_SNP [dm6]	C	A	9.094e^-5	0.252	INTRON Pxd	TF binding site mE1_TFBS_inv
3L	11254563	3L_11254563_SNP [dm3] 3L_11261463_SNP [dm6]	T	C	9.104e^-5	0.252	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12344187	2R_12344187_SNP [dm3] 2R_16456682_SNP [dm6]	T	A	9.139e^-5	0.252	INTERGENIC
2L	7770094	2L_7770094_SNP [dm3] 2L_7770094_SNP [dm6]	T	C	9.159e^-5	0.252	INTRON CG7191
2L	17107757	2L_17107757_SNP [dm3] 2L_17107757_SNP [dm6]	T	A	9.177e^-5	0.252	INTERGENIC
3L	14199265	3L_14199265_SNP [dm3] 3L_14206165_SNP [dm6]	A	T	9.180e^-5	0.252	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3629733	2L_3629733_SNP [dm3] 2L_3629733_SNP [dm6]	T	C	9.214e^-5	0.253	INTRON for	TF binding site BDTNP1_TFBS_twi
3R	20851307	3R_20851307_SNP [dm3] 3R_25025585_SNP [dm6]	T	G	9.245e^-5	0.253	SYNONYMOUS_CODING Hr96 UPSTREAM CG11781	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	9348004	2L_9348004_SNP [dm3] 2L_9348004_SNP [dm6]	T	C	9.274e^-5	0.254	DOWNSTREAM CR44802 INTERGENIC	TF binding site mE1_TFBS_kn
3L	14579045	3L_14579045_SNP [dm3] 3L_14585945_SNP [dm6]	G	A	9.283e^-5	0.254	INTRON HGTX	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12851060	3R_12851060_SNP [dm3] 3R_17025338_SNP [dm6]	A	G	9.310e^-5	0.254	INTRON Pxd
X	2185914	X_2185914_SNP [dm3] X_2291881_SNP [dm6]	A	T	9.310e^-5	0.254	INTRON CG2865	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8445388	2R_8445388_SNP [dm3] 2R_12557883_SNP [dm6]	G	A	9.324e^-5	0.254	INTRON fra	TF binding site mE1_TFBS_cad
3R	13569346	3R_13569346_SNP [dm3] 3R_17743624_SNP [dm6]	G	A	9.373e^-5	0.254	INTRON TyrRII	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20517700	2R_20517700_SNP [dm3] 2R_24630177_SNP [dm6]	C	T	9.399e^-5	0.254	UPSTREAM Cyp9c1 DOWNSTREAM CR43787 INTRON CG13594
3L	13279008	3L_13279008_SNP [dm3] 3L_13285908_SNP [dm6]	C	T	9.399e^-5	0.254	UPSTREAM CR45752 DOWNSTREAM CR45753 INTERGENIC
2R	5155604	2R_5155604_SNP [dm3] 2R_9268099_SNP [dm6]	T	C	9.401e^-5	0.254	INTRON Pkn
2L	15505279	2L_15505279_SNP [dm3] 2L_15505279_SNP [dm6]	G	A	9.471e^-5	0.254	DOWNSTREAM lace INTERGENIC
2R	14487602	2R_14487602_SNP [dm3] 2R_18600097_SNP [dm6]	G	A	9.505e^-5	0.254	INTRON GEFmeso
2R	12378736	2R_12378736_SNP [dm3] 2R_16491231_SNP [dm6]	C	G	9.506e^-5	0.254	UTR_5_PRIME S-Lap8	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	12647884	3L_12647884_SNP [dm3] 3L_12654784_SNP [dm6]	A	G	9.506e^-5	0.254	INTERGENIC
2R	9309216	2R_9309216_SNP [dm3] 2R_13421711_SNP [dm6]	C	T	9.514e^-5	0.254	SPLICE_SITE_REGION CG42321 INTRON CG42321
2R	6736954	2R_6736954_SNP [dm3] 2R_10849449_SNP [dm6]	A	C	9.523e^-5	0.254	INTRON CG30015	TF binding site BDTNP1_TFBS_dl
3R	10077407	3R_10077407_SNP [dm3] 3R_14251685_SNP [dm6]	C	G	9.529e^-5	0.254	NON_SYNONYMOUS_CODING Aats-met
2R	12057281	2R_12057281_SNP [dm3] 2R_16169776_SNP [dm6]	T	A	9.537e^-5	0.254	SYNONYMOUS_CODING CG8435 DOWNSTREAM lbk
2R	12057335	2R_12057335_SNP [dm3] 2R_16169830_SNP [dm6]	C	A	9.537e^-5	0.254	SYNONYMOUS_CODING CG8435 DOWNSTREAM lbk	TF binding site mE1_TFBS_sens
2R	12057471	2R_12057471_SNP [dm3] 2R_16169966_SNP [dm6]	G	C	9.537e^-5	0.254	NON_SYNONYMOUS_CODING CG8435 DOWNSTREAM lbk	TF binding site mE1_TFBS_sens
X	16579562	X_16579562_SNP [dm3] X_16685529_SNP [dm6]	C	T	9.555e^-5	0.254	SYNONYMOUS_CODING Sep4
3L	7767764	3L_7767764_SNP [dm3] 3L_7774664_SNP [dm6]	T	C	9.577e^-5	0.254	INTRON Clk	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	20848802	3R_20848802_SNP [dm3] 3R_25023080_SNP [dm6]	T	A	9.593e^-5	0.254	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
3L	16886033	3L_16886033_SNP [dm3] 3L_16892933_SNP [dm6]	T	G	9.608e^-5	0.254	INTRON Lmpt
2R	3577993	2R_3577993_SNP [dm3] 2R_7690488_SNP [dm6]	T	C	9.615e^-5	0.254	INTRON CG1399
2R	9928153	2R_9928153_SNP [dm3] 2R_14040648_SNP [dm6]	G	A	9.616e^-5	0.254	NON_SYNONYMOUS_CODING mam INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	4789342	2R_4789342_SNP [dm3] 2R_8901837_SNP [dm6]	G	A	9.623e^-5	0.254	UPSTREAM MrgBP INTRON Ggamma1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10866817	2L_10866817_SNP [dm3] 2L_10866817_SNP [dm6]	A	T	9.690e^-5	0.255	INTERGENIC
2R	8732301	2R_8732301_MNP [dm3] 2R_12844796_MNP [dm6]	CGC	AAT	9.727e^-5	0.255	DOWNSTREAM CG17575 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	8735067	2R_8735067_SNP [dm3] 2R_12847562_SNP [dm6]	G	T	9.727e^-5	0.255	SYNONYMOUS_CODING antr UPSTREAM CG17575 & 1 other DOWNSTREAM CG30486
3L	3654332	3L_3654332_SNP [dm3] 3L_3654332_SNP [dm6]	C	T	9.736e^-5	0.255	DOWNSTREAM dar1 INTRON CG10862
X	21453953	X_21453953_SNP [dm3] X_21582926_SNP [dm6]	G	T	9.777e^-5	0.256	UPSTREAM CR44711 INTERGENIC
3R	8566748	3R_8566748_SNP [dm3] 3R_12741026_SNP [dm6]	C	A	9.874e^-5	0.258	SYNONYMOUS_CODING CG5724 DOWNSTREAM CG5999
3R	8617915	3R_8617915_SNP [dm3] 3R_12792193_SNP [dm6]	G	A	9.924e^-5	0.258	INTERGENIC
3R	8618577	3R_8618577_SNP [dm3] 3R_12792855_SNP [dm6]	G	A	9.924e^-5	0.258	INTERGENIC
2L	10619443	2L_10619443_SNP [dm3] 2L_10619443_SNP [dm6]	A	C	9.946e^-5	0.258	INTRON Trim9
2R	2716739	2R_2716739_SNP [dm3] 2R_6829234_SNP [dm6]	G	A	9.951e^-5	0.258	INTRON CG15236	TF binding site mE1_TFBS_chinmo
2R	4008392	2R_4008392_SNP [dm3] 2R_8120887_SNP [dm6]	A	T	9.974e^-5	0.258	INTRON Asap	TF binding site BDTNP1_TFBS_dl
2R	19164475	2R_19164475_SNP [dm3] 2R_23276952_SNP [dm6]	G	T	9.978e^-5	0.258	INTERGENIC
2R	19164484	2R_19164484_SNP [dm3] 2R_23276961_SNP [dm6]	G	A	9.978e^-5	0.258	INTERGENIC
2R	18857662	2R_18857662_SNP [dm3] 2R_22970139_SNP [dm6]	G	C	9.983e^-5	0.258	INTERGENIC
3R	13835421	3R_13835421_SNP [dm3] 3R_18009699_SNP [dm6]	G	T	1.001e^-4	0.258	INTRON cpo
3L	3784827	3L_3784827_DEL [dm3] 3L_3784827_DEL [dm6]	AT	A	1.005e^-4	0.258	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9256569	2R_9256569_SNP [dm3] 2R_13369064_SNP [dm6]	A	T	1.009e^-4	0.258	INTERGENIC
3L	15971047	3L_15971047_SNP [dm3] 3L_15977947_SNP [dm6]	C	A	1.009e^-4	0.258	UPSTREAM CG17028 INTRON brm & 1 other
2L	9250744	2L_9250744_SNP [dm3] 2L_9250744_SNP [dm6]	A	G	1.010e^-4	0.258	DOWNSTREAM CR43734 & 2 others INTRON aust	TF binding site mE1_TFBS_HSA
3L	14666569	3L_14666569_SNP [dm3] 3L_14673469_SNP [dm6]	T	A	1.015e^-4	0.258	UPSTREAM tRNA:M3:70Fb DOWNSTREAM tRNA:M3:70Fa INTRON ome	TF binding site mE1_TFBS_HSA
2L	15503992	2L_15503992_SNP [dm3] 2L_15503992_SNP [dm6]	A	T	1.015e^-4	0.258	UTR_3_PRIME lace
2L	11894130	2L_11894130_SNP [dm3] 2L_11894130_SNP [dm6]	C	T	1.015e^-4	0.258	INTRON Pde1c
2L	11894235	2L_11894235_SNP [dm3] 2L_11894235_SNP [dm6]	A	C	1.015e^-4	0.258	INTRON Pde1c
2L	18043327	2L_18043327_SNP [dm3] 2L_18043327_SNP [dm6]	T	G	1.016e^-4	0.258	INTRON rdo
2R	9748835	2R_9748835_SNP [dm3] 2R_13861330_SNP [dm6]	A	G	1.017e^-4	0.258	UPSTREAM CG13344 DOWNSTREAM Uba3 INTRON CG16935	TF binding site mE1_TFBS_cad mE1_TFBS_ttk
2R	9899367	2R_9899367_SNP [dm3] 2R_14011862_SNP [dm6]	C	T	1.018e^-4	0.258	INTRON mam
2L	9342571	2L_9342571_SNP [dm3] 2L_9342571_SNP [dm6]	A	T	1.018e^-4	0.258	UPSTREAM CG3748 DOWNSTREAM Eaat1 INTERGENIC
3R	12844012	3R_12844012_SNP [dm3] 3R_17018290_SNP [dm6]	A	T	1.025e^-4	0.258	DOWNSTREAM AdSL INTRON Pxd
3R	12845119	3R_12845119_SNP [dm3] 3R_17019397_SNP [dm6]	G	A	1.025e^-4	0.258	UTR_3_PRIME AdSL INTRON Pxd	TF binding site mE1_TFBS_cad
3R	12845451	3R_12845451_SNP [dm3] 3R_17019729_SNP [dm6]	C	G	1.025e^-4	0.258	SYNONYMOUS_CODING AdSL INTRON Pxd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12845700	3R_12845700_SNP [dm3] 3R_17019978_SNP [dm6]	G	A	1.025e^-4	0.258	SYNONYMOUS_CODING AdSL INTRON Pxd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12848826	3R_12848826_SNP [dm3] 3R_17023104_SNP [dm6]	T	C	1.025e^-4	0.258	INTRON Pxd
3R	12849604	3R_12849604_SNP [dm3] 3R_17023882_SNP [dm6]	C	T	1.025e^-4	0.258	INTRON Pxd
3R	12849983	3R_12849983_SNP [dm3] 3R_17024261_SNP [dm6]	A	T	1.025e^-4	0.258	INTRON Pxd	TF binding site mE1_TFBS_inv
X	3316263	X_3316263_DEL [dm3] X_3422230_DEL [dm6]	ACTA	A	1.031e^-4	0.259	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12915062	2R_12915062_SNP [dm3] 2R_17027557_SNP [dm6]	C	T	1.032e^-4	0.259	UPSTREAM CR44390 DOWNSTREAM Ark INTRON RhoGEF2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_zfh1
3L	3431659	3L_3431659_SNP [dm3] 3L_3431659_SNP [dm6]	T	G	1.036e^-4	0.26	INTRON eIF5B
3L	13982484	3L_13982484_INS [dm3] 3L_13989384_INS [dm6]	C	CATCCAC	1.039e^-4	0.26	DOWNSTREAM CG9040 INTRON CG17364
2R	9265235	2R_9265235_SNP [dm3] 2R_13377730_SNP [dm6]	G	T	1.043e^-4	0.26	UTR_5_PRIME CG10814	TF binding site mE1_TFBS_chinmo
2R	16580392	2R_16580392_SNP [dm3] 2R_20692887_SNP [dm6]	C	T	1.045e^-4	0.26	SYNONYMOUS_CODING CG13438 DOWNSTREAM CR44659
2L	15409293	2L_15409293_SNP [dm3] 2L_15409293_SNP [dm6]	A	T	1.046e^-4	0.26	INTERGENIC
3R	13411561	3R_13411561_SNP [dm3] 3R_17585839_SNP [dm6]	A	C	1.046e^-4	0.26	INTERGENIC
2R	15207582	2R_15207582_SNP [dm3] 2R_19320077_SNP [dm6]	G	A	1.047e^-4	0.26	INTRON Rgk1
2L	3453542	2L_3453542_SNP [dm3] 2L_3453542_SNP [dm6]	T	G	1.050e^-4	0.26	SYNONYMOUS_CODING CG12795 DOWNSTREAM Cog3	TF binding site mE1_TFBS_cad
3L	14544792	3L_14544792_SNP [dm3] 3L_14551692_SNP [dm6]	G	A	1.050e^-4	0.26	UPSTREAM CG9238 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	19211508	3R_19211508_SNP [dm3] 3R_23385786_SNP [dm6]	T	G	1.052e^-4	0.26	INTERGENIC
3R	13411526	3R_13411526_SNP [dm3] 3R_17585804_SNP [dm6]	T	A	1.053e^-4	0.26	INTERGENIC
2L	15003114	2L_15003114_SNP [dm3] 2L_15003114_SNP [dm6]	A	T	1.055e^-4	0.26	INTERGENIC
3L	9003231	3L_9003231_SNP [dm3] 3L_9010131_SNP [dm6]	G	C	1.059e^-4	0.26	UPSTREAM CG5194 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12851436	3R_12851436_SNP [dm3] 3R_17025714_SNP [dm6]	C	T	1.064e^-4	0.26	SYNONYMOUS_CODING Pxd
3R	12851856	3R_12851856_SNP [dm3] 3R_17026134_SNP [dm6]	T	C	1.064e^-4	0.26	INTRON Pxd
3R	12852449	3R_12852449_SNP [dm3] 3R_17026727_SNP [dm6]	G	A	1.064e^-4	0.26	SYNONYMOUS_CODING Pxd
3R	12852865	3R_12852865_SNP [dm3] 3R_17027143_SNP [dm6]	T	C	1.064e^-4	0.26	SPLICE_SITE_REGION Pxd INTRON Pxd
3R	12852880	3R_12852880_SNP [dm3] 3R_17027158_SNP [dm6]	A	G	1.064e^-4	0.26	INTRON Pxd
2L	14684219	2L_14684219_SNP [dm3] 2L_14684219_SNP [dm6]	A	C	1.065e^-4	0.26	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	15407473	2L_15407473_SNP [dm3] 2L_15407473_SNP [dm6]	T	G	1.067e^-4	0.26	INTERGENIC
3R	20848791	3R_20848791_INS [dm3] 3R_25023069_INS [dm6]	T	TC	1.067e^-4	0.26	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
2L	6752516	2L_6752516_SNP [dm3] 2L_6752516_SNP [dm6]	A	G	1.068e^-4	0.26	INTRON CG11221
3L	11658867	3L_11658867_SNP [dm3] 3L_11665767_SNP [dm6]	C	T	1.070e^-4	0.261	INTRON CG32085
X	17375666	X_17375666_SNP [dm3] X_17481633_SNP [dm6]	G	A	1.077e^-4	0.262	INTRON CG43658
2L	14375066	2L_14375066_SNP [dm3] 2L_14375066_SNP [dm6]	T	G	1.077e^-4	0.262	INTERGENIC
2R	5524278	2R_5524278_SNP [dm3] 2R_9636773_SNP [dm6]	T	A	1.081e^-4	0.262	DOWNSTREAM CR44070 INTRON Mmp2
2L	9342499	2L_9342499_SNP [dm3] 2L_9342499_SNP [dm6]	C	T	1.086e^-4	0.263	UPSTREAM CG3748 DOWNSTREAM Eaat1 INTERGENIC
3R	12851499	3R_12851499_SNP [dm3] 3R_17025777_SNP [dm6]	T	C	1.093e^-4	0.264	SYNONYMOUS_CODING Pxd
3R	12851690	3R_12851690_SNP [dm3] 3R_17025968_SNP [dm6]	T	A	1.093e^-4	0.264	SYNONYMOUS_CODING Pxd
3R	19211528	3R_19211528_SNP [dm3] 3R_23385806_SNP [dm6]	T	A	1.096e^-4	0.264	INTERGENIC
2R	17106826	2R_17106826_SNP [dm3] 2R_21219321_SNP [dm6]	G	A	1.098e^-4	0.264	INTRON ASPP	TF binding site mE1_TFBS_cad
3R	12840081	3R_12840081_INS [dm3] 3R_17014359_INS [dm6]	A	AA	1.099e^-4	0.264	UPSTREAM Pxd INTERGENIC
2L	11156051	2L_11156051_SNP [dm3] 2L_11156051_SNP [dm6]	G	T	1.101e^-4	0.264	UPSTREAM CG6287 DOWNSTREAM Ca-beta INTERGENIC	TF binding site mE1_TFBS_Trl
2L	14684106	2L_14684106_SNP [dm3] 2L_14684106_SNP [dm6]	T	C	1.103e^-4	0.264	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2L	14684188	2L_14684188_SNP [dm3] 2L_14684188_SNP [dm6]	T	A	1.103e^-4	0.264	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2L	3997568	2L_3997568_DEL [dm3] 2L_3997568_DEL [dm6]	TGTC	G	1.106e^-4	0.264	INTERGENIC
X	4524004	X_4524004_SNP [dm3] X_4629971_SNP [dm6]	T	C	1.107e^-4	0.264	NON_SYNONYMOUS_CODING CG12184
3L	10604886	3L_10604886_SNP [dm3] 3L_10611786_SNP [dm6]	A	T	1.107e^-4	0.264	INTERGENIC
3L	8096808	3L_8096808_SNP [dm3] 3L_8103708_SNP [dm6]	A	G	1.111e^-4	0.265	SYNONYMOUS_CODING Ect4	TF binding site mE1_TFBS_cad
3R	11786351	3R_11786351_SNP [dm3] 3R_15960629_SNP [dm6]	C	T	1.112e^-4	0.265	UTR_3_PRIME Sap47 DOWNSTREAM Sap47
2L	1139117	2L_1139117_SNP [dm3] 2L_1139117_SNP [dm6]	A	T	1.120e^-4	0.266	SPLICE_SITE_REGION CG4577 INTRON CG4577	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12424938	2R_12424938_DEL [dm3] 2R_16537433_DEL [dm6]	GTGCCAGCATTTATCCGGCA...	G	1.124e^-4	0.267	DOWNSTREAM loopin-1 INTERGENIC
3L	14172702	3L_14172702_SNP [dm3] 3L_14179602_SNP [dm6]	A	C	1.126e^-4	0.267	UPSTREAM D INTERGENIC	regulatory region REDfly_CRMs
3R	8364388	3R_8364388_INS [dm3] 3R_12538666_INS [dm6]	G	GAG	1.126e^-4	0.267	INTRON Octbeta3R
2L	18302654	2L_18302654_INS [dm3] 2L_18302654_INS [dm6]	G	GG	1.131e^-4	0.267	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	12419467	X_12419467_SNP [dm3] X_12525434_SNP [dm6]	G	C	1.133e^-4	0.267	INTRON CG43921
2L	6500247	2L_6500247_SNP [dm3] 2L_6500247_SNP [dm6]	A	T	1.135e^-4	0.267	INTRON CG31637
3L	20865262	3L_20865262_SNP [dm3] 3L_20872162_SNP [dm6]	C	G	1.136e^-4	0.267	INTRON CG32432
3R	4599043	3R_4599043_SNP [dm3] 3R_8773321_SNP [dm6]	G	T	1.136e^-4	0.267	UPSTREAM CG34301 & 1 other DOWNSTREAM Pif1B & 1 other INTERGENIC
3R	8448484	3R_8448484_SNP [dm3] 3R_12622762_SNP [dm6]	T	G	1.138e^-4	0.267	DOWNSTREAM Vha55 INTERGENIC
3L	1913658	3L_1913658_SNP [dm3] 3L_1913658_SNP [dm6]	G	A	1.140e^-4	0.267	INTERGENIC
3L	76712	3L_76712_SNP [dm3] 3L_76712_SNP [dm6]	A	C	1.140e^-4	0.267	INTERGENIC
3R	15368598	3R_15368598_SNP [dm3] 3R_19542876_SNP [dm6]	G	A	1.144e^-4	0.267	INTRON Dys
2L	10868567	2L_10868567_SNP [dm3] 2L_10868567_SNP [dm6]	C	A	1.144e^-4	0.267	INTERGENIC
2L	14684142	2L_14684142_SNP [dm3] 2L_14684142_SNP [dm6]	A	G	1.144e^-4	0.267	INTRON osp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3L	5229751	3L_5229751_SNP [dm3] 3L_5236651_SNP [dm6]	C	A	1.151e^-4	0.268	DOWNSTREAM CG4669 INTRON shep
3R	12844513	3R_12844513_SNP [dm3] 3R_17018791_SNP [dm6]	T	C	1.158e^-4	0.268	UTR_3_PRIME AdSL INTRON Pxd
3R	12849809	3R_12849809_SNP [dm3] 3R_17024087_SNP [dm6]	A	G	1.158e^-4	0.268	INTRON Pxd	TF binding site mE1_TFBS_inv
3L	14667359	3L_14667359_SNP [dm3] 3L_14674259_SNP [dm6]	G	C	1.160e^-4	0.268	UPSTREAM tRNA:M3:70Fb & 1 other DOWNSTREAM CG4914 INTRON ome	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
2L	10867057	2L_10867057_SNP [dm3] 2L_10867057_SNP [dm6]	A	C	1.160e^-4	0.268	INTERGENIC
2R	13829798	2R_13829798_SNP [dm3] 2R_17942293_SNP [dm6]	A	G	1.161e^-4	0.268	INTERGENIC
3L	14579022	3L_14579022_SNP [dm3] 3L_14585922_SNP [dm6]	C	A	1.162e^-4	0.268	INTRON HGTX	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12848259	3R_12848259_SNP [dm3] 3R_17022537_SNP [dm6]	C	T	1.163e^-4	0.268	INTRON Pxd
2R	7552741	2R_7552741_SNP [dm3] 2R_11665236_SNP [dm6]	G	A	1.164e^-4	0.268	UPSTREAM Tret1-1 INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12851364	3R_12851364_SNP [dm3] 3R_17025642_SNP [dm6]	G	T	1.167e^-4	0.268	SYNONYMOUS_CODING Pxd
3R	12852386	3R_12852386_SNP [dm3] 3R_17026664_SNP [dm6]	T	C	1.167e^-4	0.268	SYNONYMOUS_CODING Pxd
3R	12852488	3R_12852488_SNP [dm3] 3R_17026766_SNP [dm6]	T	A	1.167e^-4	0.268	SYNONYMOUS_CODING Pxd
2L	11925028	2L_11925028_SNP [dm3] 2L_11925028_SNP [dm6]	G	T	1.168e^-4	0.268	INTRON Pde1c
3L	8563995	3L_8563995_DEL [dm3] 3L_8570895_DEL [dm6]	CC	C	1.168e^-4	0.268	UPSTREAM mir-190 DOWNSTREAM rhea INTRON rhea
3L	20413461	3L_20413461_SNP [dm3] 3L_20420361_SNP [dm6]	A	G	1.170e^-4	0.268	NON_SYNONYMOUS_CODING zye	TF binding site mE1_TFBS_cad
3L	6543499	3L_6543499_SNP [dm3] 3L_6550399_SNP [dm6]	G	T	1.173e^-4	0.269	UPSTREAM CG18769 DOWNSTREAM sfl INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk
2L	9043147	2L_9043147_SNP [dm3] 2L_9043147_SNP [dm6]	C	A	1.181e^-4	0.269	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18714867	2R_18714867_SNP [dm3] 2R_22827344_SNP [dm6]	T	A	1.182e^-4	0.269	INTRON CG30274 & 1 other
2L	11253369	2L_11253369_SNP [dm3] 2L_11253369_SNP [dm6]	A	C	1.184e^-4	0.269	INTRON ab
3L	13105164	3L_13105164_INS [dm3] 3L_13112064_INS [dm6]	T	TGTTCTCCAG	1.187e^-4	0.269	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	13105167	3L_13105167_SNP [dm3] 3L_13112067_SNP [dm6]	T	C	1.187e^-4	0.269	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	9350024	2L_9350024_SNP [dm3] 2L_9350024_SNP [dm6]	A	G	1.189e^-4	0.269	UPSTREAM CR44802 & 1 other DOWNSTREAM CG43350 INTERGENIC
3L	8150002	3L_8150002_SNP [dm3] 3L_8156902_SNP [dm6]	C	A	1.190e^-4	0.269	INTRON CG42445
3L	8155854	3L_8155854_SNP [dm3] 3L_8162754_SNP [dm6]	T	A	1.190e^-4	0.269	INTRON CG13675
3L	6244483	3L_6244483_SNP [dm3] 3L_6251383_SNP [dm6]	A	G	1.190e^-4	0.269	SYNONYMOUS_CODING Best2
3R	9525454	3R_9525454_SNP [dm3] 3R_13699732_SNP [dm6]	A	G	1.191e^-4	0.269	UPSTREAM f-cup & 1 other INTRON f-cup	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11862665	2R_11862665_SNP [dm3] 2R_15975160_SNP [dm6]	A	G	1.193e^-4	0.269	SYNONYMOUS_CODING Strn-Mlck
2L	5676826	2L_5676826_SNP [dm3] 2L_5676826_SNP [dm6]	A	G	1.193e^-4	0.269	INTERGENIC
2R	9929037	2R_9929037_SNP [dm3] 2R_14041532_SNP [dm6]	A	T	1.198e^-4	0.27	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	6244477	3L_6244477_SNP [dm3] 3L_6251377_SNP [dm6]	T	C	1.200e^-4	0.27	SYNONYMOUS_CODING Best2
2R	1321485	2R_1321485_SNP [dm3] 2R_5433980_SNP [dm6]	T	G	1.215e^-4	0.272	INTRON laccase2
2R	8343287	2R_8343287_SNP [dm3] 2R_12455782_SNP [dm6]	T	C	1.216e^-4	0.272	INTRON Lac	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16768720	2R_16768720_INS [dm3] 2R_20881215_INS [dm6]	T	AAGAGTAACA	1.218e^-4	0.272	INTRON Cib2
2R	16768771	2R_16768771_SNP [dm3] 2R_20881266_SNP [dm6]	C	A	1.218e^-4	0.272	INTRON Cib2	TF binding site mE1_TFBS_inv
2R	16768792	2R_16768792_DEL [dm3] 2R_20881287_DEL [dm6]	ATTATAAGGCA...	A	1.218e^-4	0.272	INTRON Cib2	TF binding site mE1_TFBS_inv
2R	16768816	2R_16768816_SNP [dm3] 2R_20881311_SNP [dm6]	A	T	1.218e^-4	0.272	INTRON Cib2	TF binding site mE1_TFBS_inv
2R	6619784	2R_6619784_SNP [dm3] 2R_10732279_SNP [dm6]	G	T	1.218e^-4	0.272	UPSTREAM CG12338 & 1 other INTRON CG7220
X	12096811	X_12096811_SNP [dm3] X_12202778_SNP [dm6]	T	A	1.218e^-4	0.272	INTRON Ten-a	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_Trl
2R	9905294	2R_9905294_SNP [dm3] 2R_14017789_SNP [dm6]	C	T	1.226e^-4	0.273	INTRON mam
3L	16467667	3L_16467667_SNP [dm3] 3L_16474567_SNP [dm6]	G	A	1.226e^-4	0.273	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_inv
3R	18753210	3R_18753210_SNP [dm3] 3R_22927488_SNP [dm6]	G	A	1.234e^-4	0.274	INTRON klg
2L	15504364	2L_15504364_SNP [dm3] 2L_15504364_SNP [dm6]	C	G	1.236e^-4	0.274	UTR_3_PRIME lace
2R	9748859	2R_9748859_SNP [dm3] 2R_13861354_SNP [dm6]	T	C	1.237e^-4	0.274	UPSTREAM CG13344 DOWNSTREAM Uba3 INTRON CG16935	TF binding site mE1_TFBS_cad mE1_TFBS_ttk
X	8552003	X_8552003_SNP [dm3] X_8657970_SNP [dm6]	C	T	1.242e^-4	0.275	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8778921	2R_8778921_SNP [dm3] 2R_12891416_SNP [dm6]	G	T	1.243e^-4	0.275	INTRON vg	TF binding site mE1_TFBS_cad
3L	13279162	3L_13279162_SNP [dm3] 3L_13286062_SNP [dm6]	A	T	1.246e^-4	0.275	UPSTREAM CR45752 DOWNSTREAM CR45753 INTERGENIC
3L	15224753	3L_15224753_SNP [dm3] 3L_15231653_SNP [dm6]	T	C	1.248e^-4	0.275	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14803636	2L_14803636_SNP [dm3] 2L_14803636_SNP [dm6]	T	C	1.250e^-4	0.275	DOWNSTREAM CG33308 INTERGENIC
2R	2743601	2R_2743601_SNP [dm3] 2R_6856096_SNP [dm6]	C	A	1.251e^-4	0.275	INTERGENIC
3L	20870020	3L_20870020_SNP [dm3] 3L_20876920_SNP [dm6]	A	T	1.255e^-4	0.276	INTRON CG32432
3L	2720418	3L_2720418_SNP [dm3] 3L_2720418_SNP [dm6]	G	A	1.257e^-4	0.276	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12922202	3R_12922202_SNP [dm3] 3R_17096480_SNP [dm6]	T	A	1.259e^-4	0.276	UPSTREAM cher INTRON cher
3L	12609752	3L_12609752_SNP [dm3] 3L_12616652_SNP [dm6]	T	C	1.262e^-4	0.277	INTRON caup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	15553020	2L_15553020_SNP [dm3] 2L_15553020_SNP [dm6]	A	C	1.266e^-4	0.277	DOWNSTREAM CG15256 INTRON kek3
2L	15500968	2L_15500968_SNP [dm3] 2L_15500968_SNP [dm6]	A	C	1.268e^-4	0.277	INTRON lace
2L	6283090	2L_6283090_SNP [dm3] 2L_6283090_SNP [dm6]	G	A	1.268e^-4	0.277	INTRON Ddr
3L	6585417	3L_6585417_SNP [dm3] 3L_6592317_SNP [dm6]	G	C	1.269e^-4	0.277	UTR_3_PRIME CG18769 DOWNSTREAM CG18769
2R	9309367	2R_9309367_SNP [dm3] 2R_13421862_SNP [dm6]	T	A	1.273e^-4	0.277	SYNONYMOUS_CODING CG42321
3L	7413892	3L_7413892_SNP [dm3] 3L_7420792_SNP [dm6]	C	G	1.274e^-4	0.277	INTERGENIC	TF binding site mE1_TFBS_run
3R	12845673	3R_12845673_SNP [dm3] 3R_17019951_SNP [dm6]	A	G	1.277e^-4	0.277	SYNONYMOUS_CODING AdSL INTRON Pxd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10869457	2L_10869457_SNP [dm3] 2L_10869457_SNP [dm6]	G	A	1.278e^-4	0.277	UPSTREAM CG12517 INTERGENIC
3R	10837187	3R_10837187_SNP [dm3] 3R_15011465_SNP [dm6]	G	T	1.279e^-4	0.277	INTERGENIC
2R	16764707	2R_16764707_SNP [dm3] 2R_20877202_SNP [dm6]	A	T	1.280e^-4	0.277	INTRON Ipk1
2L	13887557	2L_13887557_SNP [dm3] 2L_13887557_SNP [dm6]	A	T	1.281e^-4	0.277	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	8535490	2L_8535490_SNP [dm3] 2L_8535490_SNP [dm6]	A	T	1.284e^-4	0.278	UPSTREAM CG17834 INTRON CG17834	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	16514643	X_16514643_SNP [dm3] X_16620610_SNP [dm6]	T	G	1.289e^-4	0.278	INTRON CG9782	TF binding site BDTNP1_TFBS_twi
2L	10154016	2L_10154016_SNP [dm3] 2L_10154016_SNP [dm6]	C	T	1.289e^-4	0.278	SYNONYMOUS_CODING CG4839 INTRON CG44153
2L	3832088	2L_3832088_SNP [dm3] 2L_3832088_SNP [dm6]	T	C	1.291e^-4	0.278	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE
X	3221954	X_3221954_INS [dm3] X_3327921_INS [dm6]	C	CC	1.294e^-4	0.278	INTRON CR44886 & 1 other
2R	12402079	2R_12402079_SNP [dm3] 2R_16514574_SNP [dm6]	A	C	1.296e^-4	0.278	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	13411493	3R_13411493_SNP [dm3] 3R_17585771_SNP [dm6]	A	T	1.299e^-4	0.278	INTERGENIC
3R	13411494	3R_13411494_SNP [dm3] 3R_17585772_SNP [dm6]	A	T	1.299e^-4	0.278	INTERGENIC
2R	8636346	2R_8636346_SNP [dm3] 2R_12748841_SNP [dm6]	G	C	1.301e^-4	0.278	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8636348	2R_8636348_DEL [dm3] 2R_12748843_DEL [dm6]	TTTAATCGGGGT...	T	1.301e^-4	0.278	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6826973	2R_6826973_SNP [dm3] 2R_10939468_SNP [dm6]	T	G	1.303e^-4	0.278	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
2R	14742947	2R_14742947_SNP [dm3] 2R_18855442_SNP [dm6]	A	T	1.304e^-4	0.278	UPSTREAM Jheh1 DOWNSTREAM Jheh2 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
X	7915214	X_7915214_SNP [dm3] X_8021181_SNP [dm6]	A	G	1.306e^-4	0.278	SYNONYMOUS_CODING CG15333 INTRON Tbh
3R	12849821	3R_12849821_SNP [dm3] 3R_17024099_SNP [dm6]	A	T	1.306e^-4	0.278	INTRON Pxd	TF binding site mE1_TFBS_inv
2L	14857029	2L_14857029_SNP [dm3] 2L_14857029_SNP [dm6]	T	C	1.310e^-4	0.278	INTERGENIC
3R	13653220	3R_13653220_SNP [dm3] 3R_17827498_SNP [dm6]	C	A	1.312e^-4	0.278	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5881019	3L_5881019_SNP [dm3] 3L_5887919_SNP [dm6]	T	A	1.312e^-4	0.278	INTERGENIC
3L	5889594	3L_5889594_SNP [dm3] 3L_5896494_SNP [dm6]	G	A	1.312e^-4	0.278	SYNONYMOUS_CODING Pole2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14668858	3L_14668858_DEL [dm3] 3L_14675758_DEL [dm6]	TTT	A	1.313e^-4	0.278	INTRON ome & 1 other
3L	19386798	3L_19386798_SNP [dm3] 3L_19393698_SNP [dm6]	G	C	1.320e^-4	0.279	INTRON CG32206
3R	12849213	3R_12849213_SNP [dm3] 3R_17023491_SNP [dm6]	A	G	1.322e^-4	0.279	INTRON Pxd
3L	7120186	3L_7120186_SNP [dm3] 3L_7127086_SNP [dm6]	G	A	1.324e^-4	0.279	SYNONYMOUS_CODING BBS1 DOWNSTREAM CG8629	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16339686	2L_16339686_SNP [dm3] 2L_16339686_SNP [dm6]	C	G	1.328e^-4	0.279	NON_SYNONYMOUS_CODING CG42266 DOWNSTREAM CG44405
2R	14340960	2R_14340960_SNP [dm3] 2R_18453455_SNP [dm6]	G	A	1.328e^-4	0.279	SYNONYMOUS_CODING CG17669 DOWNSTREAM CG5190	TF binding site mE1_TFBS_cad
2L	13430666	2L_13430666_SNP [dm3] 2L_13430666_SNP [dm6]	C	T	1.329e^-4	0.279	INTRON CG42784
3R	12837124	3R_12837124_DEL [dm3] 3R_17011402_DEL [dm6]	CA	C	1.330e^-4	0.279	INTRON CG8907	TF binding site mE1_TFBS_cad
2L	12515490	2L_12515490_SNP [dm3] 2L_12515490_SNP [dm6]	G	A	1.331e^-4	0.279	INTRON bun
3L	11590033	3L_11590033_SNP [dm3] 3L_11596933_SNP [dm6]	T	G	1.334e^-4	0.279	UPSTREAM CG7368 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12853527	3R_12853527_SNP [dm3] 3R_17027805_SNP [dm6]	T	A	1.334e^-4	0.279	SYNONYMOUS_CODING Pxd UPSTREAM CG5225
3L	8507689	3L_8507689_SNP [dm3] 3L_8514589_SNP [dm6]	C	T	1.335e^-4	0.279	SYNONYMOUS_CODING CG6683 INTRON CG6765	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	539313	X_539313_DEL [dm3] X_645280_DEL [dm6]	CCGCCGC	C	1.340e^-4	0.28	DOWNSTREAM CR44839	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	7907494	2L_7907494_SNP [dm3] 2L_7907494_SNP [dm6]	T	A	1.345e^-4	0.28	INTRON Snoo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11190977	2L_11190977_SNP [dm3] 2L_11190977_SNP [dm6]	C	G	1.359e^-4	0.282	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	7648460	2L_7648460_SNP [dm3] 2L_7648460_SNP [dm6]	G	A	1.359e^-4	0.282	INTRON Slob
3L	11589892	3L_11589892_SNP [dm3] 3L_11596792_SNP [dm6]	A	G	1.360e^-4	0.282	UPSTREAM CG7368 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	16553216	X_16553216_SNP [dm3] X_16659183_SNP [dm6]	T	C	1.360e^-4	0.282	NON_SYNONYMOUS_CODING r	TF binding site mE1_TFBS_chinmo
X	8403228	X_8403228_SNP [dm3] X_8509195_SNP [dm6]	A	C	1.364e^-4	0.283	UPSTREAM CG33181 INTRON CG33181
2L	14684146	2L_14684146_SNP [dm3] 2L_14684146_SNP [dm6]	C	A	1.365e^-4	0.283	INTRON osp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3L	48693	3L_48693_SNP [dm3] 3L_48693_SNP [dm6]	T	A	1.367e^-4	0.283	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	20432861	3L_20432861_SNP [dm3] 3L_20439761_SNP [dm6]	G	C	1.369e^-4	0.283	UTR_5_PRIME CG11796 UPSTREAM CR43943 INTRON CG11796 EXON CR45176
2R	4387468	2R_4387468_SNP [dm3] 2R_8499963_SNP [dm6]	G	C	1.374e^-4	0.284	INTRON mtt
3L	101347	3L_101347_SNP [dm3] 3L_101347_SNP [dm6]	G	C	1.384e^-4	0.285	INTERGENIC
3L	7986952	3L_7986952_SNP [dm3] 3L_7993852_SNP [dm6]	G	C	1.385e^-4	0.285	INTRON nmo	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
3L	8155849	3L_8155849_SNP [dm3] 3L_8162749_SNP [dm6]	A	T	1.387e^-4	0.285	INTRON CG13675
2R	5135044	2R_5135044_SNP [dm3] 2R_9247539_SNP [dm6]	C	T	1.388e^-4	0.285	UPSTREAM hig INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7868831	2L_7868831_SNP [dm3] 2L_7868831_SNP [dm6]	A	C	1.389e^-4	0.285	INTRON Proc
3R	12838932	3R_12838932_SNP [dm3] 3R_17013210_SNP [dm6]	C	T	1.394e^-4	0.286	DOWNSTREAM CG8907 INTERGENIC
2L	4486004	2L_4486004_SNP [dm3] 2L_4486004_SNP [dm6]	T	A	1.399e^-4	0.287	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4297381	2L_4297381_SNP [dm3] 2L_4297381_SNP [dm6]	G	A	1.402e^-4	0.287	INTRON tutl
3L	12706383	3L_12706383_SNP [dm3] 3L_12713283_SNP [dm6]	T	C	1.406e^-4	0.288	INTERGENIC
3R	10351751	3R_10351751_SNP [dm3] 3R_14526029_SNP [dm6]	C	T	1.416e^-4	0.289	INTRON Pde6
3R	6195263	3R_6195263_SNP [dm3] 3R_10369541_SNP [dm6]	A	T	1.422e^-4	0.289	INTRON Rfx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	1625877	2L_1625877_SNP [dm3] 2L_1625877_SNP [dm6]	A	C	1.422e^-4	0.289	EXON CR44603
3L	11590187	3L_11590187_SNP [dm3] 3L_11597087_SNP [dm6]	G	A	1.424e^-4	0.289	UPSTREAM CG7368 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	11590191	3L_11590191_SNP [dm3] 3L_11597091_SNP [dm6]	A	C	1.424e^-4	0.289	UPSTREAM CG7368 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	19279592	2L_19279592_SNP [dm3] 2L_19279592_SNP [dm6]	G	A	1.425e^-4	0.289	INTERGENIC
2L	8650930	2L_8650930_SNP [dm3] 2L_8650930_SNP [dm6]	C	T	1.426e^-4	0.289	INTRON Sema-1a
2R	7253134	2R_7253134_SNP [dm3] 2R_11365629_SNP [dm6]	G	A	1.430e^-4	0.289	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7253725	2R_7253725_DEL [dm3] 2R_11366220_DEL [dm6]	TGTACACAAATACATACCTA...	T	1.430e^-4	0.289	UPSTREAM CG13204 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7253773	2R_7253773_SNP [dm3] 2R_11366268_SNP [dm6]	C	G	1.430e^-4	0.289	UPSTREAM CG13204 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15995355	3L_15995355_SNP [dm3] 3L_16002255_SNP [dm6]	G	A	1.435e^-4	0.29	INTRON CG5830	TF binding site BDTNP1_TFBS_hb
X	17537635	X_17537635_DEL [dm3] X_17643602_DEL [dm6]	TGT	T	1.440e^-4	0.291	INTRON RhoGAPp190
2R	14291776	2R_14291776_SNP [dm3] 2R_18404271_SNP [dm6]	C	G	1.443e^-4	0.291	UPSTREAM GstE5 DOWNSTREAM GstE4 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	10507895	2L_10507895_SNP [dm3] 2L_10507895_SNP [dm6]	G	A	1.450e^-4	0.292	UTR_3_PRIME CG7384 & 1 other DOWNSTREAM CR44224	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
3L	10288246	3L_10288246_SNP [dm3] 3L_10295146_SNP [dm6]	T	A	1.460e^-4	0.293	INTERGENIC
3R	23040662	3R_23040662_SNP [dm3] 3R_27214940_SNP [dm6]	C	T	1.465e^-4	0.293	INTERGENIC
3R	12849942	3R_12849942_DEL [dm3] 3R_17024220_DEL [dm6]	ACAATA	A	1.471e^-4	0.293	INTRON Pxd	TF binding site mE1_TFBS_inv
3R	12849957	3R_12849957_SNP [dm3] 3R_17024235_SNP [dm6]	A	C	1.471e^-4	0.293	INTRON Pxd	TF binding site mE1_TFBS_inv
3R	12849978	3R_12849978_INS [dm3] 3R_17024256_INS [dm6]	T	TTAATTAAGCA...	1.471e^-4	0.293	INTRON Pxd	TF binding site mE1_TFBS_inv
3L	66513	3L_66513_SNP [dm3] 3L_66513_SNP [dm6]	G	A	1.473e^-4	0.293	UTR_5_PRIME Lsp1gamma	TF binding site mE1_TFBS_sens
2R	8778789	2R_8778789_SNP [dm3] 2R_12891284_SNP [dm6]	A	G	1.474e^-4	0.293	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	638264	2L_638264_SNP [dm3] 2L_638264_SNP [dm6]	A	G	1.474e^-4	0.293	INTERGENIC
3L	12060035	3L_12060035_SNP [dm3] 3L_12066935_SNP [dm6]	G	T	1.476e^-4	0.293	DOWNSTREAM Sema-5c INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_ttk
2L	9349439	2L_9349439_SNP [dm3] 2L_9349439_SNP [dm6]	C	A	1.478e^-4	0.293	UPSTREAM CG43350 & 1 other INTERGENIC
3L	4781981	3L_4781981_SNP [dm3] 3L_4781981_SNP [dm6]	G	A	1.478e^-4	0.293	INTRON RhoGEF64C
3R	27024679	3R_27024679_SNP [dm3] 3R_31198957_SNP [dm6]	C	A	1.480e^-4	0.293	INTRON CG1544	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	20365207	X_20365207_SNP [dm3] X_20494180_SNP [dm6]	C	T	1.481e^-4	0.293	INTRON RhoGAP19D
2R	4400044	2R_4400044_SNP [dm3] 2R_8512539_SNP [dm6]	C	T	1.486e^-4	0.293	INTRON mtt
X	15999596	X_15999596_DEL [dm3] X_16105563_DEL [dm6]	TTTAA	T	1.486e^-4	0.293	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	15999603	X_15999603_SNP [dm3] X_16105570_SNP [dm6]	A	C	1.486e^-4	0.293	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	7738804	3R_7738804_SNP [dm3] 3R_11913082_SNP [dm6]	C	G	1.488e^-4	0.293	INTRON Cad87A
3L	7392890	3L_7392890_SNP [dm3] 3L_7399790_SNP [dm6]	C	T	1.488e^-4	0.293	UTR_3_PRIME CG8562 UPSTREAM CG18417
3L	12856220	3L_12856220_SNP [dm3] 3L_12863120_SNP [dm6]	A	G	1.489e^-4	0.293	UPSTREAM CG10943 INTERGENIC
2L	7681577	2L_7681577_SNP [dm3] 2L_7681577_SNP [dm6]	G	A	1.490e^-4	0.293	SYNONYMOUS_CODING Myo28B1	TF binding site mE1_TFBS_HSA
X	9118288	X_9118288_SNP [dm3] X_9224255_SNP [dm6]	C	T	1.490e^-4	0.293	UPSTREAM t INTERGENIC
2L	7805335	2L_7805335_SNP [dm3] 2L_7805335_SNP [dm6]	G	A	1.494e^-4	0.294	SYNONYMOUS_CODING cdc14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19049880	2R_19049880_SNP [dm3] 2R_23162357_SNP [dm6]	T	G	1.496e^-4	0.294	DOWNSTREAM CG34371 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	982189	3L_982189_SNP [dm3] 3L_982189_SNP [dm6]	C	G	1.496e^-4	0.294	SYNONYMOUS_CODING Glut1 UTR_3_PRIME Glut1
2L	9073586	2L_9073586_SNP [dm3] 2L_9073586_SNP [dm6]	G	C	1.504e^-4	0.295	INTERGENIC
3L	4426387	3L_4426387_SNP [dm3] 3L_4426387_SNP [dm6]	G	T	1.508e^-4	0.295	UTR_3_PRIME CG15020
2L	16310742	2L_16310742_SNP [dm3] 2L_16310742_SNP [dm6]	C	T	1.511e^-4	0.295	UPSTREAM fzy & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	16310918	2L_16310918_SNP [dm3] 2L_16310918_SNP [dm6]	C	T	1.511e^-4	0.295	UPSTREAM fzy & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12509202	3L_12509202_SNP [dm3] 3L_12516102_SNP [dm6]	T	C	1.517e^-4	0.296	INTRON tral	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	8689524	2R_8689524_SNP [dm3] 2R_12802019_SNP [dm6]	A	G	1.518e^-4	0.296	DOWNSTREAM sca INTERGENIC
2R	15207447	2R_15207447_SNP [dm3] 2R_19319942_SNP [dm6]	A	G	1.523e^-4	0.296	INTRON Rgk1
2R	18108654	2R_18108654_SNP [dm3] 2R_22221149_SNP [dm6]	A	G	1.524e^-4	0.296	UPSTREAM Oatp58Da DOWNSTREAM Oatp58Db INTERGENIC
2R	14291758	2R_14291758_SNP [dm3] 2R_18404253_SNP [dm6]	G	T	1.525e^-4	0.296	UPSTREAM GstE5 DOWNSTREAM GstE4 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	18065504	2R_18065504_SNP [dm3] 2R_22177999_SNP [dm6]	A	G	1.526e^-4	0.296	SYNONYMOUS_CODING CG11170 DOWNSTREAM CG6758
3L	6168787	3L_6168787_SNP [dm3] 3L_6175687_SNP [dm6]	C	T	1.528e^-4	0.296	INTRON CG7376	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4001001	2L_4001001_SNP [dm3] 2L_4001001_SNP [dm6]	G	A	1.532e^-4	0.296	UPSTREAM CR45344 DOWNSTREAM CG43797 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	15253893	3L_15253893_SNP [dm3] 3L_15260793_SNP [dm6]	C	G	1.533e^-4	0.296	INTERGENIC	TF binding site mE1_TFBS_cad
3L	62954	3L_62954_SNP [dm3] 3L_62954_SNP [dm6]	G	C	1.537e^-4	0.296	INTERGENIC
2L	12519997	2L_12519997_SNP [dm3] 2L_12519997_SNP [dm6]	A	C	1.538e^-4	0.296	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	12850241	3R_12850241_SNP [dm3] 3R_17024519_SNP [dm6]	G	C	1.540e^-4	0.296	INTRON Pxd	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16662999	3L_16662999_DEL [dm3] 3L_16669899_DEL [dm6]	AA	A	1.540e^-4	0.296	DOWNSTREAM CR45241 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2290287	X_2290287_DEL [dm3] X_2396254_DEL [dm6]	GTGG	G	1.541e^-4	0.296	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6619041	X_6619041_SNP [dm3] X_6725008_SNP [dm6]	A	G	1.542e^-4	0.296	INTRON CG3168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA
2L	20630189	2L_20630189_SNP [dm3] 2L_20630189_SNP [dm6]	G	T	1.544e^-4	0.296	INTERGENIC
3L	1657630	3L_1657630_SNP [dm3] 3L_1657630_SNP [dm6]	C	G	1.544e^-4	0.296	NON_SYNONYMOUS_CODING CG7971
X	4859134	X_4859134_SNP [dm3] X_4965101_SNP [dm6]	T	A	1.545e^-4	0.296	INTRON CR44833
2R	18224400	2R_18224400_SNP [dm3] 2R_22336895_SNP [dm6]	C	T	1.545e^-4	0.296	DOWNSTREAM Liprin-gamma INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9341796	2L_9341796_SNP [dm3] 2L_9341796_SNP [dm6]	G	T	1.547e^-4	0.296	UTR_3_PRIME Eaat1
3R	20848783	3R_20848783_SNP [dm3] 3R_25023061_SNP [dm6]	A	T	1.551e^-4	0.297	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
3R	12922333	3R_12922333_SNP [dm3] 3R_17096611_SNP [dm6]	C	T	1.559e^-4	0.297	INTRON cher
2R	15205023	2R_15205023_SNP [dm3] 2R_19317518_SNP [dm6]	C	T	1.560e^-4	0.297	INTRON Rgk1
2L	12598187	2L_12598187_SNP [dm3] 2L_12598187_SNP [dm6]	T	A	1.560e^-4	0.297	INTRON nub
2L	20045727	2L_20045727_SNP [dm3] 2L_20045727_SNP [dm6]	G	A	1.561e^-4	0.297	INTRON sNPF
3L	6338409	3L_6338409_SNP [dm3] 3L_6345309_SNP [dm6]	G	A	1.563e^-4	0.297	INTRON CG13300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12087886	3L_12087886_SNP [dm3] 3L_12094786_SNP [dm6]	A	G	1.565e^-4	0.297	INTERGENIC
2R	9248005	2R_9248005_SNP [dm3] 2R_13360500_SNP [dm6]	T	C	1.567e^-4	0.297	INTERGENIC
2R	16580553	2R_16580553_SNP [dm3] 2R_20693048_SNP [dm6]	A	G	1.568e^-4	0.297	SYNONYMOUS_CODING CG13438 DOWNSTREAM CR44659
2L	5880846	2L_5880846_SNP [dm3] 2L_5880846_SNP [dm6]	G	A	1.568e^-4	0.297	INTERGENIC
3L	7501123	3L_7501123_SNP [dm3] 3L_7508023_SNP [dm6]	C	T	1.573e^-4	0.298	INTERGENIC
X	4651672	X_4651672_SNP [dm3] X_4757639_SNP [dm6]	T	C	1.576e^-4	0.298	INTERGENIC
3L	7766278	3L_7766278_INS [dm3] 3L_7773178_INS [dm6]	A	AAAATCATTA	1.580e^-4	0.298	INTRON Clk	regulatory region REDfly_CRMs
3L	11383499	3L_11383499_SNP [dm3] 3L_11390399_SNP [dm6]	T	C	1.582e^-4	0.298	INTERGENIC
3R	10093259	3R_10093259_SNP [dm3] 3R_14267537_SNP [dm6]	G	A	1.584e^-4	0.298	SYNONYMOUS_CODING trx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2082317	2L_2082317_SNP [dm3] 2L_2082317_SNP [dm6]	A	G	1.585e^-4	0.298	INTRON dpr3 EXON CR44808	TF binding site mE1_TFBS_inv
3R	12922495	3R_12922495_SNP [dm3] 3R_17096773_SNP [dm6]	A	G	1.588e^-4	0.299	INTRON cher
2L	12549157	2L_12549157_SNP [dm3] 2L_12549157_SNP [dm6]	T	A	1.595e^-4	0.299	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7767515	3L_7767515_SNP [dm3] 3L_7774415_SNP [dm6]	C	A	1.596e^-4	0.299	INTRON Clk	regulatory region REDfly_CRMs
2L	10533552	2L_10533552_SNP [dm3] 2L_10533552_SNP [dm6]	A	C	1.600e^-4	0.299	SYNONYMOUS_CODING CG18301 UPSTREAM CG18302
2R	15209666	2R_15209666_SNP [dm3] 2R_19322161_SNP [dm6]	T	A	1.606e^-4	0.299	INTRON Rgk1	TF binding site mE1_TFBS_inv
3L	7772231	3L_7772231_SNP [dm3] 3L_7779131_SNP [dm6]	C	G	1.608e^-4	0.299	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1606380	2L_1606380_INS [dm3] 2L_1606380_INS [dm6]	T	TT	1.609e^-4	0.299	INTRON CG31935 & 1 other
3L	1339101	3L_1339101_SNP [dm3] 3L_1339101_SNP [dm6]	C	T	1.609e^-4	0.299	SYNONYMOUS_CODING l_3_02640 DOWNSTREAM CG2199
2L	1139590	2L_1139590_SNP [dm3] 2L_1139590_SNP [dm6]	C	T	1.609e^-4	0.299	NON_SYNONYMOUS_CODING CG4577	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10339932	3L_10339932_SNP [dm3] 3L_10346832_SNP [dm6]	T	C	1.609e^-4	0.299	INTERGENIC
4	503111	4_503111_SNP [dm3] 4_482485_SNP [dm6]	T	C	1.610e^-4	0.299	SPLICE_SITE_REGION Asator START_GAINED Asator UTR_5_PRIME Asator UPSTREAM Asator INTRON Asator	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	14698061	2L_14698061_SNP [dm3] 2L_14698061_SNP [dm6]	A	C	1.611e^-4	0.299	INTERGENIC

By genomic position
Variant impact
Gene name

Microbiota_OTU016 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results