DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.613e^-15)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.0134111
In_3R_P	0.0002525

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	17.2158	0.0002

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

7820 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	5085833	2R_5085833_SNP [dm3] 2R_9198328_SNP [dm6]	A	C	2.294e^-15	4.269e^-9	INTRON unpg	transposable element FlyBase
2R	19402895	2R_19402895_SNP [dm3] 2R_23515372_SNP [dm6]	G	A	3.800e^-14	2.357e^-8	INTERGENIC
2R	19402896	2R_19402896_SNP [dm3] 2R_23515373_SNP [dm6]	G	A	3.800e^-14	2.357e^-8	INTERGENIC
3L	5847440	3L_5847440_SNP [dm3] 3L_5854340_SNP [dm6]	C	T	1.459e^-13	6.534e^-8	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26070203	3R_26070203_SNP [dm3] 3R_30244481_SNP [dm6]	G	C	2.020e^-13	6.534e^-8	SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3685944	3R_3685944_SNP [dm3] 3R_7860222_SNP [dm6]	A	G	2.107e^-13	6.534e^-8	INTRON CG17816
3L	3786620	3L_3786620_SNP [dm3] 3L_3786620_SNP [dm6]	T	A	2.960e^-13	7.867e^-8	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	5847467	3L_5847467_SNP [dm3] 3L_5854367_SNP [dm6]	G	A	4.157e^-13	9.216e^-8	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9176923	2R_9176923_SNP [dm3] 2R_13289418_SNP [dm6]	A	T	4.458e^-13	9.216e^-8	INTRON Dh31-R
3R	5055986	3R_5055986_SNP [dm3] 3R_9230264_SNP [dm6]	C	A	9.985e^-13	1.858e^-7	INTRON pum EXON CR45196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	17112070	3L_17112070_INS [dm3] 3L_17118970_INS [dm6]	A	ATGCAGGA	1.580e^-12	2.672e^-7	INTRON Rbp6
3R	15249385	3R_15249385_DEL [dm3] 3R_19423663_DEL [dm6]	AAGAGCTA	A	2.629e^-12	3.494e^-7	DOWNSTREAM CG3517 INTRON CG31221
3R	15249409	3R_15249409_SNP [dm3] 3R_19423687_SNP [dm6]	T	C	2.629e^-12	3.494e^-7	DOWNSTREAM CG3517 INTRON CG31221
3R	15249422	3R_15249422_SNP [dm3] 3R_19423700_SNP [dm6]	G	A	2.629e^-12	3.494e^-7	DOWNSTREAM CG3517 INTRON CG31221
3R	15249403	3R_15249403_SNP [dm3] 3R_19423681_SNP [dm6]	A	G	3.605e^-12	4.471e^-7	DOWNSTREAM CG3517 INTRON CG31221
2L	15903481	2L_15903481_SNP [dm3] 2L_15903481_SNP [dm6]	A	T	4.987e^-12	5.799e^-7	INTERGENIC
X	16612508	X_16612508_DEL [dm3] X_16718475_DEL [dm6]	GG	G	7.493e^-12	8.201e^-7	INTRON CG34325
2L	15903404	2L_15903404_SNP [dm3] 2L_15903404_SNP [dm6]	A	C	9.876e^-12	1.021e^-6	UPSTREAM CG31821 INTERGENIC
2L	7236676	2L_7236676_SNP [dm3] 2L_7236676_SNP [dm6]	A	C	1.078e^-11	1.026e^-6	INTRON Ndae1
X	9901008	X_9901008_SNP [dm3] X_10006975_SNP [dm6]	G	A	1.103e^-11	1.026e^-6	DOWNSTREAM CG32694 INTERGENIC
3R	17981394	3R_17981394_SNP [dm3] 3R_22155672_SNP [dm6]	T	C	1.344e^-11	1.191e^-6	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15249414	3R_15249414_SNP [dm3] 3R_19423692_SNP [dm6]	T	G	1.493e^-11	1.232e^-6	DOWNSTREAM CG3517 INTRON CG31221
2L	15903417	2L_15903417_SNP [dm3] 2L_15903417_SNP [dm6]	T	A	1.523e^-11	1.232e^-6	INTERGENIC
X	21910670	X_21910670_SNP [dm3] X_22508834_SNP [dm6]	G	A	1.606e^-11	1.245e^-6	DOWNSTREAM l_1_G0196 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2062396	3L_2062396_SNP [dm3] 3L_2062396_SNP [dm6]	T	G	1.853e^-11	1.379e^-6	INTRON sls
3R	7524523	3R_7524523_SNP [dm3] 3R_11698801_SNP [dm6]	T	G	2.114e^-11	1.513e^-6	DOWNSTREAM CG14717 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2L	6589019	2L_6589019_SNP [dm3] 2L_6589019_SNP [dm6]	T	G	2.475e^-11	1.540e^-6	INTRON CG11319
3L	5846589	3L_5846589_SNP [dm3] 3L_5853489_SNP [dm6]	T	A	2.632e^-11	1.540e^-6	INTERGENIC
3L	5846745	3L_5846745_SNP [dm3] 3L_5853645_SNP [dm6]	G	T	2.632e^-11	1.540e^-6	INTERGENIC
3L	5847291	3L_5847291_SNP [dm3] 3L_5854191_SNP [dm6]	G	T	2.632e^-11	1.540e^-6	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17874126	X_17874126_SNP [dm3] X_17980093_SNP [dm6]	T	C	2.632e^-11	1.540e^-6	INTRON Sh
3R	23490827	3R_23490827_SNP [dm3] 3R_27665105_SNP [dm6]	C	A	2.649e^-11	1.540e^-6	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad
3R	7515427	3R_7515427_SNP [dm3] 3R_11689705_SNP [dm6]	T	A	3.012e^-11	1.608e^-6	DOWNSTREAM CG18765 INTRON CG6908
3R	7515611	3R_7515611_SNP [dm3] 3R_11689889_SNP [dm6]	C	T	3.012e^-11	1.608e^-6	SYNONYMOUS_CODING CG6908 DOWNSTREAM CG18765	TF binding site mE1_TFBS_cnc
2R	10537633	2R_10537633_SNP [dm3] 2R_14650128_SNP [dm6]	T	A	3.026e^-11	1.608e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9819355	X_9819355_SNP [dm3] X_9925322_SNP [dm6]	C	A	3.507e^-11	1.812e^-6	INTERGENIC
3R	26071981	3R_26071981_SNP [dm3] 3R_30246259_SNP [dm6]	A	C	3.624e^-11	1.822e^-6	INTRON CG9733
X	11706021	X_11706021_SNP [dm3] X_11811988_SNP [dm6]	G	A	5.292e^-11	2.591e^-6	SYNONYMOUS_CODING CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	8804240	X_8804240_SNP [dm3] X_8910207_SNP [dm6]	T	A	5.558e^-11	2.605e^-6	INTRON rdgA
X	17872212	X_17872212_SNP [dm3] X_17978179_SNP [dm6]	A	G	5.602e^-11	2.605e^-6	INTRON Sh
2R	9107654	2R_9107654_SNP [dm3] 2R_13220149_SNP [dm6]	G	C	6.412e^-11	2.910e^-6	NON_SYNONYMOUS_CODING CG4646 UPSTREAM CG4630 & 1 other DOWNSTREAM Fsn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	5056680	3R_5056680_SNP [dm3] 3R_9230958_SNP [dm6]	G	A	1.026e^-10	4.202e^-6	DOWNSTREAM CR45196 INTRON pum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_Trl
3R	5057505	3R_5057505_SNP [dm3] 3R_9231783_SNP [dm6]	G	A	1.026e^-10	4.202e^-6	INTRON pum	TF binding site mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3R	5059052	3R_5059052_SNP [dm3] 3R_9233330_SNP [dm6]	A	C	1.026e^-10	4.202e^-6	INTRON pum	TF binding site BDTNP1_TFBS_dl
3R	26236589	3R_26236589_SNP [dm3] 3R_30410867_SNP [dm6]	A	C	1.039e^-10	4.202e^-6	INTERGENIC
3R	26236749	3R_26236749_SNP [dm3] 3R_30411027_SNP [dm6]	C	A	1.039e^-10	4.202e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	20580301	2R_20580301_SNP [dm3] 2R_24692778_SNP [dm6]	G	A	1.404e^-10	5.559e^-6	SYNONYMOUS_CODING ST6Gal	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5058044	3R_5058044_SNP [dm3] 3R_9232322_SNP [dm6]	A	G	2.012e^-10	7.588e^-6	SYNONYMOUS_CODING pum	TF binding site mE1_TFBS_chinmo
3R	26071350	3R_26071350_SNP [dm3] 3R_30245628_SNP [dm6]	T	G	2.136e^-10	7.588e^-6	SYNONYMOUS_CODING CG9733
2R	14242907	2R_14242907_SNP [dm3] 2R_18355402_SNP [dm6]	T	C	2.488e^-10	7.588e^-6	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	14244378	2R_14244378_SNP [dm3] 2R_18356873_SNP [dm6]	G	A	2.488e^-10	7.588e^-6	START_GAINED sbb UTR_5_PRIME sbb INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14261212	2R_14261212_SNP [dm3] 2R_18373707_SNP [dm6]	T	C	2.488e^-10	7.588e^-6	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12694516	3L_12694516_SNP [dm3] 3L_12701416_SNP [dm6]	G	A	2.488e^-10	7.588e^-6	INTRON mirr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	11101572	3R_11101572_SNP [dm3] 3R_15275850_SNP [dm6]	A	G	2.488e^-10	7.588e^-6	SYNONYMOUS_CODING CG4338 UPSTREAM Cp190 DOWNSTREAM MRG15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	11101752	3R_11101752_SNP [dm3] 3R_15276030_SNP [dm6]	C	A	2.488e^-10	7.588e^-6	NON_SYNONYMOUS_CODING CG4338 UPSTREAM Cp190 DOWNSTREAM MRG15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	11102117	3R_11102117_SNP [dm3] 3R_15276395_SNP [dm6]	C	G	2.488e^-10	7.588e^-6	NON_SYNONYMOUS_CODING CG4338 DOWNSTREAM MRG15	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11102352	3R_11102352_SNP [dm3] 3R_15276630_SNP [dm6]	G	A	2.488e^-10	7.588e^-6	SYNONYMOUS_CODING MRG15 DOWNSTREAM CG4338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11102400	3R_11102400_SNP [dm3] 3R_15276678_SNP [dm6]	A	G	2.488e^-10	7.588e^-6	SYNONYMOUS_CODING MRG15 DOWNSTREAM CG4338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11102475	3R_11102475_SNP [dm3] 3R_15276753_SNP [dm6]	G	C	2.488e^-10	7.588e^-6	SYNONYMOUS_CODING MRG15 DOWNSTREAM CG4338	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	11107588	3R_11107588_SNP [dm3] 3R_15281866_SNP [dm6]	A	T	2.488e^-10	7.588e^-6	INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	11107603	3R_11107603_SNP [dm3] 3R_15281881_SNP [dm6]	T	C	2.488e^-10	7.588e^-6	INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	16722652	2L_16722652_SNP [dm3] 2L_16722652_SNP [dm6]	G	T	2.631e^-10	7.802e^-6	DOWNSTREAM VhaSFD & 1 other INTERGENIC
3L	7316646	3L_7316646_SNP [dm3] 3L_7323546_SNP [dm6]	T	A	2.667e^-10	7.802e^-6	UPSTREAM Rint1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
2L	3130226	2L_3130226_SNP [dm3] 2L_3130226_SNP [dm6]	C	T	2.684e^-10	7.802e^-6	DOWNSTREAM CG15403 INTRON toc
3R	20369818	3R_20369818_INS [dm3] 3R_24544096_INS [dm6]	C	CAATGCGATC	3.029e^-10	7.964e^-6	UPSTREAM CG5789 & 1 other INTERGENIC
2R	14267563	2R_14267563_SNP [dm3] 2R_18380058_SNP [dm6]	G	C	3.174e^-10	7.964e^-6	INTERGENIC
3L	14705561	3L_14705561_SNP [dm3] 3L_14712461_SNP [dm6]	G	A	3.243e^-10	7.964e^-6	INTRON ome
3L	14706344	3L_14706344_SNP [dm3] 3L_14713244_SNP [dm6]	G	C	3.243e^-10	7.964e^-6	INTRON ome
3L	7094840	3L_7094840_SNP [dm3] 3L_7101740_SNP [dm6]	G	A	3.393e^-10	7.964e^-6	INTRON form3
3R	11107595	3R_11107595_SNP [dm3] 3R_15281873_SNP [dm6]	G	T	3.393e^-10	7.964e^-6	INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14252566	3R_14252566_INS [dm3] 3R_18426844_INS [dm6]	G	GTT	3.435e^-10	7.964e^-6	FRAME_SHIFT fru DOWNSTREAM fru INTRON fru	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14252570	3R_14252570_INS [dm3] 3R_18426848_INS [dm6]	C	CT	3.435e^-10	7.964e^-6	FRAME_SHIFT fru DOWNSTREAM fru INTRON fru	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23259219	3R_23259219_SNP [dm3] 3R_27433497_SNP [dm6]	A	T	3.435e^-10	7.964e^-6	INTRON side
3R	23259489	3R_23259489_SNP [dm3] 3R_27433767_SNP [dm6]	C	A	3.435e^-10	7.964e^-6	INTRON side
3R	23259866	3R_23259866_SNP [dm3] 3R_27434144_SNP [dm6]	C	T	3.435e^-10	7.964e^-6	INTRON side	TF binding site BDTNP1_TFBS_twi
3R	11091229	3R_11091229_INS [dm3] 3R_15265507_INS [dm6]	G	GC	3.443e^-10	7.964e^-6	UPSTREAM Oscp DOWNSTREAM Set INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	11094926	3R_11094926_SNP [dm3] 3R_15269204_SNP [dm6]	C	A	3.443e^-10	7.964e^-6	NON_SYNONYMOUS_CODING Zip88E UPSTREAM CG14864	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	11095488	3R_11095488_SNP [dm3] 3R_15269766_SNP [dm6]	C	T	3.443e^-10	7.964e^-6	SYNONYMOUS_CODING Zip88E DOWNSTREAM Cp190	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11095846	3R_11095846_SNP [dm3] 3R_15270124_SNP [dm6]	C	G	3.443e^-10	7.964e^-6	DOWNSTREAM Cp190 INTRON Zip88E	TF binding site mE1_TFBS_HSA
3R	11101725	3R_11101725_SNP [dm3] 3R_15276003_SNP [dm6]	G	T	3.486e^-10	7.964e^-6	SYNONYMOUS_CODING CG4338 UPSTREAM Cp190 DOWNSTREAM MRG15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	3622111	3R_3622111_SNP [dm3] 3R_7796389_SNP [dm6]	C	G	3.498e^-10	7.964e^-6	NON_SYNONYMOUS_CODING CG2641 DOWNSTREAM CG18744
3R	11107597	3R_11107597_SNP [dm3] 3R_15281875_SNP [dm6]	A	G	3.510e^-10	7.964e^-6	INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	11707310	X_11707310_SNP [dm3] X_11813277_SNP [dm6]	T	C	3.736e^-10	8.373e^-6	INTRON CG1578	TF binding site mE1_TFBS_inv
X	11706797	X_11706797_SNP [dm3] X_11812764_SNP [dm6]	C	T	3.924e^-10	8.691e^-6	INTRON CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
3R	11107909	3R_11107909_SNP [dm3] 3R_15282187_SNP [dm6]	T	C	4.375e^-10	9.575e^-6	INTRON Tm1	TF binding site mE1_TFBS_Trl
3L	14704427	3L_14704427_SNP [dm3] 3L_14711327_SNP [dm6]	C	T	4.608e^-10	9.969e^-6	INTRON ome
3R	23259806	3R_23259806_SNP [dm3] 3R_27434084_SNP [dm6]	C	G	4.686e^-10	1.002e^-5	INTRON side	TF binding site BDTNP1_TFBS_twi
2R	3193701	2R_3193701_SNP [dm3] 2R_7306196_SNP [dm6]	G	A	5.225e^-10	1.105e^-5	INTERGENIC
2R	3238056	2R_3238056_SNP [dm3] 2R_7350551_SNP [dm6]	G	T	5.387e^-10	1.126e^-5	INTRON Dscam1	TF binding site mE1_TFBS_inv
3R	18685882	3R_18685882_SNP [dm3] 3R_22860160_SNP [dm6]	C	T	6.550e^-10	1.322e^-5	INTERGENIC
X	21931684	X_21931684_SNP [dm3] X_22529848_SNP [dm6]	T	G	6.704e^-10	1.322e^-5	UPSTREAM S6kII INTRON CG17600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	17723438	3R_17723438_SNP [dm3] 3R_21897716_SNP [dm6]	T	A	6.710e^-10	1.322e^-5	INTRON CG6678
3L	7221445	3L_7221445_SNP [dm3] 3L_7228345_SNP [dm6]	G	T	6.726e^-10	1.322e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	4734505	2R_4734505_SNP [dm3] 2R_8847000_SNP [dm6]	C	T	6.752e^-10	1.322e^-5	INTRON sns	TF binding site mE1_TFBS_cad
2R	8297766	2R_8297766_SNP [dm3] 2R_12410261_SNP [dm6]	G	T	6.752e^-10	1.322e^-5	NON_SYNONYMOUS_CODING CG33626 UPSTREAM CG33627 DOWNSTREAM CG30050
2R	4072850	2R_4072850_SNP [dm3] 2R_8185345_SNP [dm6]	T	A	7.122e^-10	1.380e^-5	INTRON LRP1
X	11706052	X_11706052_SNP [dm3] X_11812019_SNP [dm6]	G	T	7.326e^-10	1.405e^-5	SYNONYMOUS_CODING CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	10530386	3L_10530386_SNP [dm3] 3L_10537286_SNP [dm6]	T	A	8.338e^-10	1.583e^-5	INTRON A2bp1
2R	5087283	2R_5087283_SNP [dm3] 2R_9199778_SNP [dm6]	C	A	8.939e^-10	1.630e^-5	UTR_3_PRIME unpg	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5087295	2R_5087295_SNP [dm3] 2R_9199790_SNP [dm6]	T	G	8.939e^-10	1.630e^-5	UTR_3_PRIME unpg	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5087311	2R_5087311_SNP [dm3] 2R_9199806_SNP [dm6]	A	G	8.939e^-10	1.630e^-5	UTR_3_PRIME unpg	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5087314	2R_5087314_SNP [dm3] 2R_9199809_SNP [dm6]	G	A	8.939e^-10	1.630e^-5	UTR_3_PRIME unpg	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21804067	3L_21804067_SNP [dm3] 3L_21810967_SNP [dm6]	A	C	9.262e^-10	1.673e^-5	INTRON eg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13552010	3R_13552010_SNP [dm3] 3R_17726288_SNP [dm6]	A	G	9.717e^-10	1.738e^-5	INTRON Lgr1	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	14236703	2R_14236703_SNP [dm3] 2R_18349198_SNP [dm6]	T	A	1.048e^-9	1.857e^-5	INTRON sbb
2R	10547226	2R_10547226_SNP [dm3] 2R_14659721_SNP [dm6]	A	T	1.388e^-9	2.437e^-5	UPSTREAM Adgf-E INTERGENIC	TF binding site mE1_TFBS_cad
3L	20249790	3L_20249790_DEL [dm3] 3L_20256690_DEL [dm6]	AATGGGATAGTAGGGGCTTA...	A	1.804e^-9	3.136e^-5	INTRON rdgC	TF binding site BDTNP1_TFBS_twi
X	9901037	X_9901037_SNP [dm3] X_10007004_SNP [dm6]	T	C	1.846e^-9	3.179e^-5	DOWNSTREAM CG32694 INTERGENIC
2R	18942204	2R_18942204_SNP [dm3] 2R_23054681_SNP [dm6]	G	C	2.352e^-9	4.014e^-5	UPSTREAM CG44252 INTERGENIC
2L	11933443	2L_11933443_SNP [dm3] 2L_11933443_SNP [dm6]	T	C	2.590e^-9	4.381e^-5	INTERGENIC
3R	14223496	3R_14223496_SNP [dm3] 3R_18397774_SNP [dm6]	A	G	2.618e^-9	4.388e^-5	UPSTREAM Vha100-2 INTRON Vha100-2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	17870981	X_17870981_SNP [dm3] X_17976948_SNP [dm6]	A	T	2.707e^-9	4.418e^-5	INTRON Sh
X	17871057	X_17871057_SNP [dm3] X_17977024_SNP [dm6]	C	T	2.707e^-9	4.418e^-5	INTRON Sh
X	17871070	X_17871070_SNP [dm3] X_17977037_SNP [dm6]	A	G	2.707e^-9	4.418e^-5	INTRON Sh
X	21910584	X_21910584_INS [dm3] X_22508748_INS [dm6]	T	TT	3.854e^-9	6.192e^-5	DOWNSTREAM l_1_G0196 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17894258	3R_17894258_SNP [dm3] 3R_22068536_SNP [dm6]	A	T	3.927e^-9	6.192e^-5	INTRON how
3R	17894397	3R_17894397_SNP [dm3] 3R_22068675_SNP [dm6]	C	A	3.927e^-9	6.192e^-5	INTRON how
3R	17896037	3R_17896037_SNP [dm3] 3R_22070315_SNP [dm6]	C	A	3.927e^-9	6.192e^-5	INTRON how	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	26234558	3R_26234558_SNP [dm3] 3R_30408836_SNP [dm6]	A	G	4.720e^-9	7.318e^-5	INTERGENIC
3R	26237203	3R_26237203_SNP [dm3] 3R_30411481_SNP [dm6]	C	T	4.720e^-9	7.318e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25966218	3R_25966218_SNP [dm3] 3R_30140496_SNP [dm6]	T	C	4.820e^-9	7.350e^-5	INTRON AdoR	TF binding site mE1_TFBS_chinmo
3R	27082931	3R_27082931_SNP [dm3] 3R_31257209_SNP [dm6]	G	A	4.820e^-9	7.350e^-5	UPSTREAM CG3669 DOWNSTREAM spn-F INTERGENIC
X	21910588	X_21910588_SNP [dm3] X_22508752_SNP [dm6]	T	C	5.207e^-9	7.842e^-5	DOWNSTREAM l_1_G0196 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18597817	X_18597817_SNP [dm3] X_18703784_SNP [dm6]	A	T	5.227e^-9	7.842e^-5	INTERGENIC
3R	17891723	3R_17891723_SNP [dm3] 3R_22066001_SNP [dm6]	T	A	5.574e^-9	8.296e^-5	INTRON how
3L	15472093	3L_15472093_SNP [dm3] 3L_15478993_SNP [dm6]	A	G	5.623e^-9	8.303e^-5	INTERGENIC
3R	20448259	3R_20448259_SNP [dm3] 3R_24622537_SNP [dm6]	C	G	5.798e^-9	8.451e^-5	INTRON mld
3R	26070190	3R_26070190_SNP [dm3] 3R_30244468_SNP [dm6]	G	A	5.814e^-9	8.451e^-5	SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14264426	2R_14264426_SNP [dm3] 2R_18376921_SNP [dm6]	G	A	7.030e^-9	1.014e^-4	UPSTREAM CR42736 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	6830575	3R_6830575_DEL [dm3] 3R_11004853_DEL [dm6]	CGC	C	7.344e^-9	1.051e^-4	INTRON CG34114
3R	5056940	3R_5056940_SNP [dm3] 3R_9231218_SNP [dm6]	A	T	7.418e^-9	1.053e^-4	DOWNSTREAM CR45196 INTRON pum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_Trl
X	18597808	X_18597808_SNP [dm3] X_18703775_SNP [dm6]	A	T	7.482e^-9	1.055e^-4	INTERGENIC
3R	26070670	3R_26070670_SNP [dm3] 3R_30244948_SNP [dm6]	T	A	7.627e^-9	1.067e^-4	INTRON CG9733
3L	14337185	3L_14337185_SNP [dm3] 3L_14344085_SNP [dm6]	A	C	7.765e^-9	1.078e^-4	INTRON fz
3R	7520556	3R_7520556_SNP [dm3] 3R_11694834_SNP [dm6]	G	T	8.097e^-9	1.095e^-4	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	7520558	3R_7520558_SNP [dm3] 3R_11694836_SNP [dm6]	A	G	8.097e^-9	1.095e^-4	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	7520595	3R_7520595_SNP [dm3] 3R_11694873_SNP [dm6]	T	A	8.097e^-9	1.095e^-4	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	5225293	X_5225293_SNP [dm3] X_5331260_SNP [dm6]	G	A	8.129e^-9	1.095e^-4	SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_sens
3R	5057354	3R_5057354_SNP [dm3] 3R_9231632_SNP [dm6]	G	A	8.183e^-9	1.095e^-4	INTRON pum	TF binding site mE1_TFBS_D mE1_TFBS_Trl
X	9738470	X_9738470_SNP [dm3] X_9844437_SNP [dm6]	C	G	8.331e^-9	1.107e^-4	INTRON CG32698
3R	26236645	3R_26236645_SNP [dm3] 3R_30410923_SNP [dm6]	C	G	8.457e^-9	1.111e^-4	INTERGENIC
2L	10117839	2L_10117839_SNP [dm3] 2L_10117839_SNP [dm6]	C	A	8.478e^-9	1.111e^-4	INTRON CG44153 & 1 other
2R	8368307	2R_8368307_SNP [dm3] 2R_12480802_SNP [dm6]	A	G	8.687e^-9	1.115e^-4	UTR_5_PRIME Dh44-R2
3R	3736357	3R_3736357_SNP [dm3] 3R_7910635_SNP [dm6]	G	A	8.687e^-9	1.115e^-4	SYNONYMOUS_CODING Prat DOWNSTREAM Taf7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6573557	X_6573557_SNP [dm3] X_6679524_SNP [dm6]	T	C	8.687e^-9	1.115e^-4	UPSTREAM l_1_G0255 & 1 other INTRON l_1_G0255
2R	19646653	2R_19646653_SNP [dm3] 2R_23759130_SNP [dm6]	G	T	8.786e^-9	1.120e^-4	INTRON CG9850	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	17891188	3R_17891188_SNP [dm3] 3R_22065466_SNP [dm6]	G	A	1.004e^-8	1.271e^-4	INTRON how
X	8802853	X_8802853_SNP [dm3] X_8908820_SNP [dm6]	G	T	1.014e^-8	1.275e^-4	INTRON rdgA	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	5225260	X_5225260_SNP [dm3] X_5331227_SNP [dm6]	G	A	1.063e^-8	1.328e^-4	SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6588745	2L_6588745_SNP [dm3] 2L_6588745_SNP [dm6]	G	A	1.130e^-8	1.383e^-4	INTRON CG11319
2R	17810265	2R_17810265_INS [dm3] 2R_21922760_INS [dm6]	T	TAAAT	1.132e^-8	1.383e^-4	INTRON Fili
2R	17810301	2R_17810301_SNP [dm3] 2R_21922796_SNP [dm6]	C	T	1.132e^-8	1.383e^-4	INTRON Fili
3R	7520569	3R_7520569_SNP [dm3] 3R_11694847_SNP [dm6]	C	T	1.141e^-8	1.383e^-4	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	26496802	3R_26496802_SNP [dm3] 3R_30671080_SNP [dm6]	C	T	1.160e^-8	1.383e^-4	INTERGENIC
3R	26496809	3R_26496809_INS [dm3] 3R_30671087_INS [dm6]	T	TCA	1.160e^-8	1.383e^-4	INTERGENIC
3R	26496811	3R_26496811_INS [dm3] 3R_30671089_INS [dm6]	G	GTATACGAAT	1.160e^-8	1.383e^-4	INTERGENIC
X	18597814	X_18597814_SNP [dm3] X_18703781_SNP [dm6]	G	T	1.197e^-8	1.416e^-4	INTERGENIC
3R	26482702	3R_26482702_SNP [dm3] 3R_30656980_SNP [dm6]	A	C	1.203e^-8	1.416e^-4	INTERGENIC
3L	5238270	3L_5238270_SNP [dm3] 3L_5245170_SNP [dm6]	A	G	1.262e^-8	1.476e^-4	INTRON shep
X	16539631	X_16539631_SNP [dm3] X_16645598_SNP [dm6]	T	C	1.357e^-8	1.578e^-4	INTRON mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9305562	3L_9305562_SNP [dm3] 3L_9312462_SNP [dm6]	A	G	1.382e^-8	1.597e^-4	INTERGENIC
3L	12969003	3L_12969003_SNP [dm3] 3L_12975903_SNP [dm6]	A	G	1.444e^-8	1.658e^-4	INTERGENIC
3L	9305828	3L_9305828_SNP [dm3] 3L_9312728_SNP [dm6]	G	A	1.502e^-8	1.715e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15904213	2L_15904213_SNP [dm3] 2L_15904213_SNP [dm6]	C	T	1.782e^-8	2.021e^-4	DOWNSTREAM beat-Ib INTERGENIC
2R	19535930	2R_19535930_INS [dm3] 2R_23648407_INS [dm6]	T	TGT	1.874e^-8	2.113e^-4	INTRON retn	TF binding site BDTNP1_TFBS_dl
3L	13882437	3L_13882437_SNP [dm3] 3L_13889337_SNP [dm6]	T	C	1.925e^-8	2.158e^-4	INTRON dysc
2L	16460414	2L_16460414_SNP [dm3] 2L_16460414_SNP [dm6]	C	T	2.051e^-8	2.285e^-4	INTERGENIC	regulatory region REDfly_CRMs
2L	6811469	2L_6811469_SNP [dm3] 2L_6811469_SNP [dm6]	C	T	2.142e^-8	2.372e^-4	INTERGENIC
2R	8309316	2R_8309316_SNP [dm3] 2R_12421811_SNP [dm6]	A	C	2.208e^-8	2.431e^-4	INTRON CG8834	TF binding site mE1_TFBS_cad
3L	15171810	3L_15171810_SNP [dm3] 3L_15178710_SNP [dm6]	C	T	2.253e^-8	2.466e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	4735732	2R_4735732_SNP [dm3] 2R_8848227_SNP [dm6]	T	C	2.395e^-8	2.602e^-4	INTRON sns	TF binding site mE1_TFBS_cad
3L	15224379	3L_15224379_SNP [dm3] 3L_15231279_SNP [dm6]	T	G	2.406e^-8	2.602e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	6111784	3L_6111784_SNP [dm3] 3L_6118684_SNP [dm6]	A	G	2.426e^-8	2.609e^-4	INTRON Ets65A
3R	6219289	3R_6219289_SNP [dm3] 3R_10393567_SNP [dm6]	A	G	2.589e^-8	2.768e^-4	INTRON cwo
2R	14272635	2R_14272635_SNP [dm3] 2R_18385130_SNP [dm6]	G	A	2.888e^-8	3.051e^-4	SYNONYMOUS_CODING CG15067 DOWNSTREAM IM1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11082761	3R_11082761_SNP [dm3] 3R_15257039_SNP [dm6]	G	C	2.931e^-8	3.051e^-4	UTR_3_PRIME CG42404 DOWNSTREAM eIF-2gamma
3R	11088013	3R_11088013_SNP [dm3] 3R_15262291_SNP [dm6]	C	T	2.931e^-8	3.051e^-4	INTRON eIF-2gamma & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	11093466	3R_11093466_SNP [dm3] 3R_15267744_SNP [dm6]	G	A	2.931e^-8	3.051e^-4	NON_SYNONYMOUS_CODING CG14864 UPSTREAM Zip88E	TF binding site BDTNP1_TFBS_sna mE1_TFBS_GATAe mE1_TFBS_HSA
3L	12860995	3L_12860995_SNP [dm3] 3L_12867895_SNP [dm6]	A	G	2.936e^-8	3.051e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9901366	X_9901366_SNP [dm3] X_10007333_SNP [dm6]	C	T	2.983e^-8	3.083e^-4	DOWNSTREAM CG32694 INTERGENIC
2R	8787169	2R_8787169_SNP [dm3] 2R_12899664_SNP [dm6]	T	C	3.033e^-8	3.117e^-4	DOWNSTREAM vg INTERGENIC
3L	2401947	3L_2401947_SNP [dm3] 3L_2401947_SNP [dm6]	G	A	3.180e^-8	3.251e^-4	INTRON CG45186
3L	5846122	3L_5846122_SNP [dm3] 3L_5853022_SNP [dm6]	C	T	3.206e^-8	3.260e^-4	INTERGENIC
X	11375861	X_11375861_SNP [dm3] X_11481828_SNP [dm6]	G	C	3.280e^-8	3.316e^-4	NON_SYNONYMOUS_CODING Cyp4g15	TF binding site mE1_TFBS_chinmo
3R	6056230	3R_6056230_SNP [dm3] 3R_10230508_SNP [dm6]	T	A	3.323e^-8	3.341e^-4	INTRON CG42795
3R	12550816	3R_12550816_SNP [dm3] 3R_16725094_SNP [dm6]	A	T	3.582e^-8	3.567e^-4	INTRON Ubx
3L	7385083	3L_7385083_INS [dm3] 3L_7391983_INS [dm6]	A	TTAT	3.590e^-8	3.567e^-4	INTRON CG8563
2R	19546473	2R_19546473_SNP [dm3] 2R_23658950_SNP [dm6]	G	C	3.656e^-8	3.567e^-4	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19546477	2R_19546477_SNP [dm3] 2R_23658954_SNP [dm6]	T	A	3.656e^-8	3.567e^-4	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19546481	2R_19546481_SNP [dm3] 2R_23658958_SNP [dm6]	C	T	3.656e^-8	3.567e^-4	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	9192574	2R_9192574_SNP [dm3] 2R_13305069_SNP [dm6]	A	G	3.667e^-8	3.567e^-4	INTERGENIC
3R	11096353	3R_11096353_SNP [dm3] 3R_15270631_SNP [dm6]	A	T	3.696e^-8	3.567e^-4	UTR_3_PRIME Cp190 DOWNSTREAM Zip88E
3R	13690028	3R_13690028_SNP [dm3] 3R_17864306_SNP [dm6]	G	A	3.700e^-8	3.567e^-4	INTRON tinc
2R	14272657	2R_14272657_SNP [dm3] 2R_18385152_SNP [dm6]	C	T	3.739e^-8	3.586e^-4	NON_SYNONYMOUS_CODING CG15067 DOWNSTREAM IM1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13235363	3L_13235363_SNP [dm3] 3L_13242263_SNP [dm6]	G	T	3.835e^-8	3.659e^-4	INTRON caps
3L	12860978	3L_12860978_INS [dm3] 3L_12867878_INS [dm6]	T	TC	3.912e^-8	3.714e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23712674	3R_23712674_SNP [dm3] 3R_27886952_SNP [dm6]	A	T	4.226e^-8	3.991e^-4	INTRON CG34353
2L	5562406	2L_5562406_SNP [dm3] 2L_5562406_SNP [dm6]	G	A	4.342e^-8	4.080e^-4	SPLICE_SITE_REGION GluRIIB INTRON GluRIIB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7512657	3R_7512657_SNP [dm3] 3R_11686935_SNP [dm6]	A	G	4.461e^-8	4.150e^-4	SYNONYMOUS_CODING CG6834
3R	7512806	3R_7512806_SNP [dm3] 3R_11687084_SNP [dm6]	A	C	4.461e^-8	4.150e^-4	NON_SYNONYMOUS_CODING CG6834
2R	9094670	2R_9094670_SNP [dm3] 2R_13207165_SNP [dm6]	A	T	4.550e^-8	4.212e^-4	NON_SYNONYMOUS_CODING FLASH UPSTREAM lat & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6101965	3L_6101965_SNP [dm3] 3L_6108865_SNP [dm6]	G	T	4.679e^-8	4.309e^-4	INTRON Ets65A
2R	13214100	2R_13214100_SNP [dm3] 2R_17326595_SNP [dm6]	C	T	4.809e^-8	4.373e^-4	INTRON mbl
3L	11976568	3L_11976568_SNP [dm3] 3L_11983468_SNP [dm6]	T	A	4.820e^-8	4.373e^-4	NON_SYNONYMOUS_CODING CG43896	TF binding site mE1_TFBS_chinmo
3L	12569540	3L_12569540_SNP [dm3] 3L_12576440_SNP [dm6]	T	A	4.826e^-8	4.373e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
2R	10007376	2R_10007376_SNP [dm3] 2R_14119871_SNP [dm6]	T	C	4.866e^-8	4.373e^-4	INTRON Prosap	TF binding site mE1_TFBS_HSA
2R	10007386	2R_10007386_SNP [dm3] 2R_14119881_SNP [dm6]	T	C	4.866e^-8	4.373e^-4	INTRON Prosap	TF binding site mE1_TFBS_HSA
3R	12550953	3R_12550953_SNP [dm3] 3R_16725231_SNP [dm6]	G	A	5.058e^-8	4.502e^-4	INTRON Ubx
3R	6818774	3R_6818774_SNP [dm3] 3R_10993052_SNP [dm6]	C	A	5.058e^-8	4.502e^-4	UTR_5_PRIME CG34114
3R	3751465	3R_3751465_DEL [dm3] 3R_7925743_DEL [dm6]	GAGGT	G	5.098e^-8	4.516e^-4	INTRON dsx
3L	7088857	3L_7088857_SNP [dm3] 3L_7095757_SNP [dm6]	C	T	5.191e^-8	4.577e^-4	INTRON form3	TF binding site BDTNP1_TFBS_da
3R	11094199	3R_11094199_SNP [dm3] 3R_15268477_SNP [dm6]	T	C	5.629e^-8	4.940e^-4	UTR_5_PRIME CG14864 UPSTREAM Zip88E & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3R	17904057	3R_17904057_SNP [dm3] 3R_22078335_SNP [dm6]	A	G	6.267e^-8	5.474e^-4	UTR_3_PRIME how
3L	4837872	3L_4837872_SNP [dm3] 3L_4837872_SNP [dm6]	A	T	6.318e^-8	5.493e^-4	UTR_3_PRIME CG13707
3L	12569545	3L_12569545_SNP [dm3] 3L_12576445_SNP [dm6]	T	A	6.434e^-8	5.553e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
3R	15243626	3R_15243626_SNP [dm3] 3R_19417904_SNP [dm6]	T	C	6.447e^-8	5.553e^-4	INTRON CG31221
3R	15240234	3R_15240234_SNP [dm3] 3R_19414512_SNP [dm6]	G	A	6.626e^-8	5.681e^-4	INTRON CG31221	TF binding site mE1_TFBS_inv
2L	7234690	2L_7234690_SNP [dm3] 2L_7234690_SNP [dm6]	C	T	6.695e^-8	5.714e^-4	SYNONYMOUS_CODING Ndae1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3618765	2R_3618765_SNP [dm3] 2R_7731260_SNP [dm6]	T	G	6.817e^-8	5.788e^-4	INTRON CG18812
2L	6745565	2L_6745565_SNP [dm3] 2L_6745565_SNP [dm6]	T	A	6.890e^-8	5.788e^-4	UTR_5_PRIME CG31910 DOWNSTREAM snoRNA:Me28S-G2743 INTRON CG11221
3L	13881380	3L_13881380_SNP [dm3] 3L_13888280_SNP [dm6]	G	A	6.907e^-8	5.788e^-4	INTRON dysc
3L	13881403	3L_13881403_SNP [dm3] 3L_13888303_SNP [dm6]	C	T	6.907e^-8	5.788e^-4	INTRON dysc
3L	21786210	3L_21786210_SNP [dm3] 3L_21793110_SNP [dm6]	G	T	7.084e^-8	5.891e^-4	INTERGENIC
3L	7088928	3L_7088928_SNP [dm3] 3L_7095828_SNP [dm6]	C	T	7.143e^-8	5.891e^-4	INTRON form3	TF binding site BDTNP1_TFBS_da
3L	7088758	3L_7088758_SNP [dm3] 3L_7095658_SNP [dm6]	A	T	7.153e^-8	5.891e^-4	INTRON form3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	6223922	3R_6223922_SNP [dm3] 3R_10398200_SNP [dm6]	T	C	7.174e^-8	5.891e^-4	NON_SYNONYMOUS_CODING cwo	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3567250	3L_3567250_SNP [dm3] 3L_3567250_SNP [dm6]	A	T	7.202e^-8	5.891e^-4	INTRON Eip63E
2R	9658051	2R_9658051_DEL [dm3] 2R_13770546_DEL [dm6]	TTC	T	7.220e^-8	5.891e^-4	INTRON Cpr50Ca	TF binding site mE1_TFBS_HSA
3L	4484576	3L_4484576_SNP [dm3] 3L_4484576_SNP [dm6]	A	G	7.587e^-8	6.164e^-4	DOWNSTREAM CG13722 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2L	10000465	2L_10000465_SNP [dm3] 2L_10000465_SNP [dm6]	C	T	7.781e^-8	6.294e^-4	NON_SYNONYMOUS_CODING SoYb INTRON CG31875
3R	12047750	3R_12047750_SNP [dm3] 3R_16222028_SNP [dm6]	A	G	7.857e^-8	6.301e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12047765	3R_12047765_SNP [dm3] 3R_16222043_SNP [dm6]	G	A	7.857e^-8	6.301e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12028199	3L_12028199_SNP [dm3] 3L_12035099_SNP [dm6]	G	A	7.908e^-8	6.315e^-4	INTRON rols	TF binding site BDTNP1_TFBS_twi
X	9900980	X_9900980_SNP [dm3] X_10006947_SNP [dm6]	G	C	7.982e^-8	6.346e^-4	DOWNSTREAM CG32694 INTERGENIC
3L	9931622	3L_9931622_SNP [dm3] 3L_9938522_SNP [dm6]	A	G	8.102e^-8	6.387e^-4	INTRON CG34356
3L	9931641	3L_9931641_SNP [dm3] 3L_9938541_SNP [dm6]	G	A	8.102e^-8	6.387e^-4	INTRON CG34356
3R	5063868	3R_5063868_SNP [dm3] 3R_9238146_SNP [dm6]	G	A	8.407e^-8	6.491e^-4	UTR_3_PRIME D1 UPSTREAM pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	20759590	X_20759590_SNP [dm3] X_20888563_SNP [dm6]	G	A	8.429e^-8	6.491e^-4	INTRON shakB
2L	8940212	2L_8940212_SNP [dm3] 2L_8940212_SNP [dm6]	T	C	8.443e^-8	6.491e^-4	DOWNSTREAM Tsp29Fb INTRON CG9510
2L	8940231	2L_8940231_SNP [dm3] 2L_8940231_SNP [dm6]	T	A	8.443e^-8	6.491e^-4	DOWNSTREAM Tsp29Fb INTRON CG9510
2L	8940238	2L_8940238_SNP [dm3] 2L_8940238_SNP [dm6]	T	C	8.443e^-8	6.491e^-4	DOWNSTREAM Tsp29Fb INTRON CG9510
2L	8940239	2L_8940239_SNP [dm3] 2L_8940239_SNP [dm6]	C	T	8.443e^-8	6.491e^-4	DOWNSTREAM Tsp29Fb INTRON CG9510
3L	7088729	3L_7088729_SNP [dm3] 3L_7095629_SNP [dm6]	G	T	9.043e^-8	6.883e^-4	INTRON form3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	7088732	3L_7088732_SNP [dm3] 3L_7095632_SNP [dm6]	A	C	9.043e^-8	6.883e^-4	INTRON form3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	13881391	3L_13881391_SNP [dm3] 3L_13888291_SNP [dm6]	T	A	9.063e^-8	6.883e^-4	INTRON dysc
3R	12047739	3R_12047739_SNP [dm3] 3R_16222017_SNP [dm6]	A	T	9.599e^-8	7.260e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7091206	3L_7091206_SNP [dm3] 3L_7098106_SNP [dm6]	C	T	9.899e^-8	7.417e^-4	INTRON form3
2L	10000435	2L_10000435_SNP [dm3] 2L_10000435_SNP [dm6]	T	G	1.001e^-7	7.417e^-4	NON_SYNONYMOUS_CODING SoYb INTRON CG31875
2L	10000453	2L_10000453_SNP [dm3] 2L_10000453_SNP [dm6]	C	T	1.001e^-7	7.417e^-4	NON_SYNONYMOUS_CODING SoYb INTRON CG31875
2L	10000474	2L_10000474_SNP [dm3] 2L_10000474_SNP [dm6]	G	C	1.001e^-7	7.417e^-4	NON_SYNONYMOUS_CODING SoYb INTRON CG31875
2L	10000487	2L_10000487_SNP [dm3] 2L_10000487_SNP [dm6]	C	T	1.001e^-7	7.417e^-4	SYNONYMOUS_CODING SoYb INTRON CG31875
3R	19997251	3R_19997251_SNP [dm3] 3R_24171529_SNP [dm6]	T	C	1.031e^-7	7.585e^-4	INTERGENIC
X	21337658	X_21337658_SNP [dm3] X_21466631_SNP [dm6]	T	A	1.031e^-7	7.585e^-4	DOWNSTREAM CR45507 INTERGENIC
3R	14134901	3R_14134901_SNP [dm3] 3R_18309179_SNP [dm6]	G	C	1.055e^-7	7.725e^-4	UTR_5_PRIME PKD
3L	7091950	3L_7091950_SNP [dm3] 3L_7098850_SNP [dm6]	G	C	1.069e^-7	7.803e^-4	INTRON form3
2R	3192372	2R_3192372_SNP [dm3] 2R_7304867_SNP [dm6]	T	C	1.152e^-7	8.341e^-4	INTERGENIC
2R	3192387	2R_3192387_SNP [dm3] 2R_7304882_SNP [dm6]	C	A	1.152e^-7	8.341e^-4	INTERGENIC
X	21910669	X_21910669_SNP [dm3] X_22508833_SNP [dm6]	A	G	1.231e^-7	8.877e^-4	DOWNSTREAM l_1_G0196 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16179128	2R_16179128_SNP [dm3] 2R_20291623_SNP [dm6]	G	A	1.269e^-7	9.116e^-4	UPSTREAM CR44638 INTRON Cpr56F
3L	1152545	3L_1152545_DEL [dm3] 3L_1152545_DEL [dm6]	GG	G	1.282e^-7	9.171e^-4	INTRON bab2
3L	10508967	3L_10508967_SNP [dm3] 3L_10515867_SNP [dm6]	A	C	1.287e^-7	9.172e^-4	UPSTREAM A2bp1 INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	5309213	3R_5309213_SNP [dm3] 3R_9483491_SNP [dm6]	T	A	1.312e^-7	9.315e^-4	INTRON CG16779 EXON CR45203
2L	7216310	2L_7216310_SNP [dm3] 2L_7216310_SNP [dm6]	T	C	1.339e^-7	9.470e^-4	INTRON CG13784
3L	20647120	3L_20647120_INS [dm3] 3L_20654020_INS [dm6]	A	AA	1.344e^-7	9.471e^-4	EXON CR44685
X	14779817	X_14779817_SNP [dm3] X_14885784_SNP [dm6]	C	A	1.375e^-7	9.624e^-4	DOWNSTREAM CG9514 INTRON Flo2
2R	14262002	2R_14262002_SNP [dm3] 2R_18374497_SNP [dm6]	A	C	1.376e^-7	9.624e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8243241	3L_8243241_SNP [dm3] 3L_8250141_SNP [dm6]	A	G	1.387e^-7	9.653e^-4	INTRON Dscam4
2R	3981204	2R_3981204_SNP [dm3] 2R_8093699_SNP [dm6]	C	G	1.391e^-7	9.653e^-4	INTRON CG8713
2R	9656993	2R_9656993_DEL [dm3] 2R_13769488_DEL [dm6]	TTAATAAACTCTT...	T	1.441e^-7	9.898e^-4	UPSTREAM Cpr50Ca INTERGENIC
2R	16273951	2R_16273951_SNP [dm3] 2R_20386446_SNP [dm6]	T	A	1.447e^-7	9.898e^-4	INTERGENIC
2R	16273953	2R_16273953_SNP [dm3] 2R_20386448_SNP [dm6]	T	A	1.447e^-7	9.898e^-4	INTERGENIC
2R	16273957	2R_16273957_SNP [dm3] 2R_20386452_SNP [dm6]	C	T	1.447e^-7	9.898e^-4	INTERGENIC
3R	26943207	3R_26943207_SNP [dm3] 3R_31117485_SNP [dm6]	A	C	1.467e^-7	9.996e^-4	INTERGENIC
3L	2682405	3L_2682405_SNP [dm3] 3L_2682405_SNP [dm6]	G	A	1.485e^-7	0.001	NON_SYNONYMOUS_CODING Fife
X	18394378	X_18394378_SNP [dm3] X_18500345_SNP [dm6]	G	A	1.549e^-7	0.001	NON_SYNONYMOUS_CODING Rad51D UPSTREAM GalNAc-T2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	11252593	3L_11252593_SNP [dm3] 3L_11259493_SNP [dm6]	C	T	1.589e^-7	0.001	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16080932	3L_16080932_SNP [dm3] 3L_16087832_SNP [dm6]	T	C	1.616e^-7	0.001	UTR_3_PRIME CG5235 UPSTREAM Taspase1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	896058	3L_896058_SNP [dm3] 3L_896058_SNP [dm6]	G	T	1.652e^-7	0.001	UTR_5_PRIME CG34056 DOWNSTREAM CG32479
3L	7203759	3L_7203759_DEL [dm3] 3L_7210659_DEL [dm6]	CTTCTTCC	C	1.744e^-7	0.001	INTERGENIC	TF binding site mE1_TFBS_inv
3L	22597306	3L_22597306_SNP [dm3] 3L_22604206_SNP [dm6]	T	C	1.783e^-7	0.001	INTRON CG14459
3L	14727743	3L_14727743_SNP [dm3] 3L_14734643_SNP [dm6]	A	G	1.855e^-7	0.001	INTRON ome
3L	7071019	3L_7071019_SNP [dm3] 3L_7077919_SNP [dm6]	G	A	1.864e^-7	0.001	UPSTREAM CG8641 INTERGENIC
3L	7073187	3L_7073187_SNP [dm3] 3L_7080087_SNP [dm6]	T	G	1.864e^-7	0.001	INTERGENIC
3L	7088771	3L_7088771_SNP [dm3] 3L_7095671_SNP [dm6]	A	C	1.908e^-7	0.001	INTRON form3	TF binding site BDTNP1_TFBS_da
3R	6047398	3R_6047398_SNP [dm3] 3R_10221676_SNP [dm6]	A	G	1.955e^-7	0.001	UTR_3_PRIME Syn	TF binding site BDTNP1_TFBS_dl
3R	23905238	3R_23905238_SNP [dm3] 3R_28079516_SNP [dm6]	A	T	1.990e^-7	0.001	INTRON CG34362
3R	12717187	3R_12717187_SNP [dm3] 3R_16891465_SNP [dm6]	C	G	2.015e^-7	0.001	UPSTREAM CR43617 INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6834253	3R_6834253_SNP [dm3] 3R_11008531_SNP [dm6]	A	G	2.041e^-7	0.001	INTRON CG34114
3R	22905179	3R_22905179_SNP [dm3] 3R_27079457_SNP [dm6]	G	A	2.119e^-7	0.001	INTRON CG14257	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13632149	2R_13632149_SNP [dm3] 2R_17744644_SNP [dm6]	G	C	2.128e^-7	0.001	NON_SYNONYMOUS_CODING Ir54a DOWNSTREAM CG4996 & 1 other	TF binding site mE1_TFBS_sens
3R	12047735	3R_12047735_SNP [dm3] 3R_16222013_SNP [dm6]	A	T	2.174e^-7	0.001	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12569641	3L_12569641_SNP [dm3] 3L_12576541_SNP [dm6]	C	T	2.206e^-7	0.001	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
2R	8189493	2R_8189493_SNP [dm3] 2R_12301988_SNP [dm6]	A	C	2.314e^-7	0.001	DOWNSTREAM SIP2 INTRON CG8850
2R	15076255	2R_15076255_SNP [dm3] 2R_19188750_SNP [dm6]	A	G	2.327e^-7	0.001	INTRON hppy
2R	10831136	2R_10831136_DEL [dm3] 2R_14943631_DEL [dm6]	AAACA	A	2.393e^-7	0.002	DOWNSTREAM aPKC INTRON CG10257
2R	3192447	2R_3192447_SNP [dm3] 2R_7304942_SNP [dm6]	T	A	2.393e^-7	0.002	INTERGENIC
3R	11082006	3R_11082006_SNP [dm3] 3R_15256284_SNP [dm6]	G	A	2.420e^-7	0.002	UTR_3_PRIME CG42404
3R	5059162	3R_5059162_SNP [dm3] 3R_9233440_SNP [dm6]	C	T	2.660e^-7	0.002	INTRON pum	TF binding site BDTNP1_TFBS_dl
X	16612657	X_16612657_INS [dm3] X_16718624_INS [dm6]	T	TG	2.760e^-7	0.002	INTRON CG34325
3R	12952458	3R_12952458_SNP [dm3] 3R_17126736_SNP [dm6]	C	T	2.871e^-7	0.002	SYNONYMOUS_CODING CG17477 UPSTREAM CG31269 DOWNSTREAM CR44238	TF binding site mE1_TFBS_inv
X	14601920	X_14601920_SNP [dm3] X_14707887_SNP [dm6]	A	G	2.896e^-7	0.002	INTRON NetB
3R	26878460	3R_26878460_SNP [dm3] 3R_31052738_SNP [dm6]	T	C	2.899e^-7	0.002	UTR_3_PRIME l_3_03670 DOWNSTREAM Aph-4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	19459251	3L_19459251_INS [dm3] 3L_19466151_INS [dm6]	C	ACAGTGTACAA...	2.900e^-7	0.002	DOWNSTREAM CG14096 INTERGENIC
X	8263281	X_8263281_SNP [dm3] X_8369248_SNP [dm6]	A	T	2.910e^-7	0.002	INTERGENIC
X	18195485	X_18195485_SNP [dm3] X_18301452_SNP [dm6]	G	C	2.920e^-7	0.002	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	2813512	2R_2813512_SNP [dm3] 2R_6926007_SNP [dm6]	T	C	2.922e^-7	0.002	UTR_3_PRIME mim DOWNSTREAM mim	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12166788	3R_12166788_SNP [dm3] 3R_16341066_SNP [dm6]	A	T	2.934e^-7	0.002	INTRON SF2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	11633506	3L_11633506_SNP [dm3] 3L_11640406_SNP [dm6]	A	G	2.937e^-7	0.002	INTRON CG32091
3R	4294856	3R_4294856_SNP [dm3] 3R_8469134_SNP [dm6]	A	G	3.021e^-7	0.002	INTRON CG45263	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	10987697	2L_10987697_SNP [dm3] 2L_10987697_SNP [dm6]	A	T	3.021e^-7	0.002	UPSTREAM CG12253 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3L	14707526	3L_14707526_SNP [dm3] 3L_14714426_SNP [dm6]	C	T	3.038e^-7	0.002	INTRON ome
2R	8304874	2R_8304874_SNP [dm3] 2R_12417369_SNP [dm6]	C	G	3.051e^-7	0.002	NON_SYNONYMOUS_CODING CG13157	TF binding site mE1_TFBS_cad
2L	12980123	2L_12980123_SNP [dm3] 2L_12980123_SNP [dm6]	A	G	3.171e^-7	0.002	SYNONYMOUS_CODING Vha68-3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2403082	2L_2403082_SNP [dm3] 2L_2403082_SNP [dm6]	T	C	3.171e^-7	0.002	INTRON VGlut	TF binding site mE1_TFBS_HSA
2L	2403096	2L_2403096_SNP [dm3] 2L_2403096_SNP [dm6]	A	T	3.171e^-7	0.002	INTRON VGlut	TF binding site mE1_TFBS_HSA
2L	15333978	2L_15333978_SNP [dm3] 2L_15333978_SNP [dm6]	T	C	3.178e^-7	0.002	START_GAINED esg UTR_5_PRIME esg	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	21931828	X_21931828_SNP [dm3] X_22529992_SNP [dm6]	G	A	3.216e^-7	0.002	UTR_5_PRIME S6kII INTRON CG17600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	9931784	3L_9931784_SNP [dm3] 3L_9938684_SNP [dm6]	T	A	3.269e^-7	0.002	INTRON CG34356
2R	9088397	2R_9088397_SNP [dm3] 2R_13200892_SNP [dm6]	G	T	3.320e^-7	0.002	NON_SYNONYMOUS_CODING Aats-val INTRON Aats-val	TF binding site mE1_TFBS_cad
3R	23564443	3R_23564443_SNP [dm3] 3R_27738721_SNP [dm6]	T	C	3.558e^-7	0.002	INTRON Ets98B
2R	4564232	2R_4564232_DEL [dm3] 2R_8676727_DEL [dm6]	TGAAATACTT	T	3.590e^-7	0.002	UPSTREAM CG30354 INTRON Acsl
X	21982650	X_21982650_SNP [dm3] X_22580814_SNP [dm6]	G	T	3.603e^-7	0.002	INTERGENIC
3R	12166742	3R_12166742_SNP [dm3] 3R_16341020_SNP [dm6]	T	C	3.633e^-7	0.002	INTRON SF2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	5709231	3R_5709231_SNP [dm3] 3R_9883509_SNP [dm6]	A	G	3.645e^-7	0.002	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl
3L	10095342	3L_10095342_SNP [dm3] 3L_10102242_SNP [dm6]	A	C	3.680e^-7	0.002	INTRON dpr6
3L	10095350	3L_10095350_SNP [dm3] 3L_10102250_SNP [dm6]	C	T	3.680e^-7	0.002	INTRON dpr6
3L	14707765	3L_14707765_DEL [dm3] 3L_14714665_DEL [dm6]	TT	T	3.766e^-7	0.002	INTRON ome
3R	20440374	3R_20440374_INS [dm3] 3R_24614652_INS [dm6]	T	TGTT	3.840e^-7	0.002	INTRON mld
2R	15076304	2R_15076304_SNP [dm3] 2R_19188799_SNP [dm6]	A	T	3.893e^-7	0.002	INTRON hppy
2R	12668615	2R_12668615_SNP [dm3] 2R_16781110_SNP [dm6]	G	C	3.901e^-7	0.002	NON_SYNONYMOUS_CODING resilin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	3183155	3R_3183155_SNP [dm3] 3R_7357433_SNP [dm6]	G	A	3.931e^-7	0.002	INTERGENIC
2L	13066092	2L_13066092_SNP [dm3] 2L_13066092_SNP [dm6]	A	G	4.037e^-7	0.002	INTERGENIC
3R	26282022	3R_26282022_SNP [dm3] 3R_30456300_SNP [dm6]	A	G	4.241e^-7	0.002	UPSTREAM aralar1 DOWNSTREAM CG2224 INTERGENIC
X	21982731	X_21982731_SNP [dm3] X_22580895_SNP [dm6]	A	T	4.275e^-7	0.002	INTERGENIC
X	18995912	X_18995912_INS [dm3] X_19101879_INS [dm6]	T	TT	4.317e^-7	0.002	INTERGENIC
X	18192793	X_18192793_SNP [dm3] X_18298760_SNP [dm6]	A	G	4.334e^-7	0.002	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9107410	2R_9107410_SNP [dm3] 2R_13219905_SNP [dm6]	A	T	4.337e^-7	0.002	UPSTREAM CG4630 & 1 other INTRON CG4646	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	13213898	2R_13213898_SNP [dm3] 2R_17326393_SNP [dm6]	G	A	4.349e^-7	0.002	INTRON mbl
3R	6827738	3R_6827738_SNP [dm3] 3R_11002016_SNP [dm6]	A	C	4.392e^-7	0.002	INTRON CG34114
3L	9283075	3L_9283075_SNP [dm3] 3L_9289975_SNP [dm6]	A	G	4.416e^-7	0.002	INTERGENIC
2R	14239855	2R_14239855_SNP [dm3] 2R_18352350_SNP [dm6]	T	A	4.424e^-7	0.002	INTRON sbb
2R	8309132	2R_8309132_SNP [dm3] 2R_12421627_SNP [dm6]	G	T	4.485e^-7	0.002	INTRON CG8834	TF binding site mE1_TFBS_cad
3R	10086264	3R_10086264_SNP [dm3] 3R_14260542_SNP [dm6]	G	C	4.553e^-7	0.002	SYNONYMOUS_CODING CG14840 UPSTREAM Aats-met DOWNSTREAM CG14841	TF binding site mE1_TFBS_chinmo
2R	16904663	2R_16904663_SNP [dm3] 2R_21017158_SNP [dm6]	G	A	4.561e^-7	0.002	SYNONYMOUS_CODING CG3295 UPSTREAM RIC-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	19416782	2R_19416782_SNP [dm3] 2R_23529259_SNP [dm6]	C	T	4.574e^-7	0.002	NON_SYNONYMOUS_CODING bw DOWNSTREAM mi
3L	9305767	3L_9305767_SNP [dm3] 3L_9312667_SNP [dm6]	C	T	4.698e^-7	0.002	INTERGENIC
3R	12166829	3R_12166829_SNP [dm3] 3R_16341107_SNP [dm6]	T	C	4.711e^-7	0.002	INTRON SF2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	12980114	2L_12980114_SNP [dm3] 2L_12980114_SNP [dm6]	C	T	4.825e^-7	0.002	SPLICE_SITE_REGION Vha68-3 SYNONYMOUS_CODING Vha68-3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21982681	X_21982681_SNP [dm3] X_22580845_SNP [dm6]	A	T	4.857e^-7	0.002	INTERGENIC
3L	15372340	3L_15372340_SNP [dm3] 3L_15379240_SNP [dm6]	G	A	4.886e^-7	0.002	INTERGENIC
3R	20448290	3R_20448290_SNP [dm3] 3R_24622568_SNP [dm6]	G	C	4.908e^-7	0.002	INTRON mld
3L	15124538	3L_15124538_SNP [dm3] 3L_15131438_SNP [dm6]	T	C	4.957e^-7	0.002	UPSTREAM CG13457 DOWNSTREAM CG12316 INTERGENIC
3L	15129807	3L_15129807_SNP [dm3] 3L_15136707_SNP [dm6]	G	A	4.957e^-7	0.002	UTR_5_PRIME CG12316 UPSTREAM CG12316	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
3L	15135380	3L_15135380_SNP [dm3] 3L_15142280_SNP [dm6]	C	T	4.957e^-7	0.002	DOWNSTREAM CG32147 INTRON Pdi EXON CR45396	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15139254	3L_15139254_SNP [dm3] 3L_15146154_SNP [dm6]	T	A	4.957e^-7	0.002	UTR_3_PRIME Pex3 UPSTREAM FucTA DOWNSTREAM Pex3
3L	15142837	3L_15142837_SNP [dm3] 3L_15149737_SNP [dm6]	C	G	4.957e^-7	0.002	UPSTREAM FucTA INTRON FucTA
3L	15143837	3L_15143837_SNP [dm3] 3L_15150737_SNP [dm6]	T	C	4.957e^-7	0.002	INTRON FucTA
3L	15152216	3L_15152216_SNP [dm3] 3L_15159116_SNP [dm6]	C	G	4.957e^-7	0.002	UTR_5_PRIME Prp31 UPSTREAM Msh6	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	15156891	3L_15156891_SNP [dm3] 3L_15163791_SNP [dm6]	A	T	4.957e^-7	0.002	UPSTREAM CG7011 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	15159006	3L_15159006_INS [dm3] 3L_15165906_INS [dm6]	A	ACTTATATCTACTTATTACA...	4.957e^-7	0.002	INTERGENIC
3L	14084925	3L_14084925_SNP [dm3] 3L_14091825_SNP [dm6]	A	T	4.983e^-7	0.002	INTERGENIC
3L	16111559	3L_16111559_DEL [dm3] 3L_16118459_DEL [dm6]	TG	T	4.983e^-7	0.002	INTRON Taf4	TF binding site mE1_TFBS_cad
X	13181968	X_13181968_SNP [dm3] X_13287935_SNP [dm6]	T	C	5.056e^-7	0.002	UPSTREAM CG15744 DOWNSTREAM CG15743 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
X	18188988	X_18188988_SNP [dm3] X_18294955_SNP [dm6]	T	A	5.065e^-7	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	10193835	2L_10193835_SNP [dm3] 2L_10193835_SNP [dm6]	T	C	5.091e^-7	0.002	SYNONYMOUS_CODING Sur	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
2R	13024181	2R_13024181_SNP [dm3] 2R_17136676_SNP [dm6]	T	C	5.112e^-7	0.002	NON_SYNONYMOUS_CODING Gbp UPSTREAM CG11395 DOWNSTREAM CR44391	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13743694	2R_13743694_SNP [dm3] 2R_17856189_SNP [dm6]	T	A	5.112e^-7	0.002	UTR_5_PRIME olf186-F INTRON olf186-F	TF binding site mE1_TFBS_Trl
2R	16909485	2R_16909485_SNP [dm3] 2R_21021980_SNP [dm6]	G	C	5.112e^-7	0.002	SYNONYMOUS_CODING RIC-3 INTRON RIC-3
2R	19546113	2R_19546113_SNP [dm3] 2R_23658590_SNP [dm6]	A	G	5.112e^-7	0.002	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19546203	2R_19546203_SNP [dm3] 2R_23658680_SNP [dm6]	T	A	5.112e^-7	0.002	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19547841	2R_19547841_INS [dm3] 2R_23660318_INS [dm6]	G	GGTG	5.112e^-7	0.002	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19547846	2R_19547846_SNP [dm3] 2R_23660323_SNP [dm6]	C	T	5.112e^-7	0.002	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5024339	2R_5024339_SNP [dm3] 2R_9136834_SNP [dm6]	C	T	5.112e^-7	0.002	INTRON alc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	5049031	2R_5049031_SNP [dm3] 2R_9161526_SNP [dm6]	A	G	5.112e^-7	0.002	UPSTREAM CG8008 DOWNSTREAM CG8046 EXON CR44283	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5050726	2R_5050726_SNP [dm3] 2R_9163221_SNP [dm6]	G	A	5.112e^-7	0.002	SYNONYMOUS_CODING CG8046	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16078957	3L_16078957_SNP [dm3] 3L_16085857_SNP [dm6]	C	A	5.112e^-7	0.002	UTR_3_PRIME Taspase1 DOWNSTREAM Taspase1 & 1 other
3L	16086777	3L_16086777_SNP [dm3] 3L_16093677_SNP [dm6]	C	T	5.112e^-7	0.002	INTRON ClC-c
3L	16090674	3L_16090674_SNP [dm3] 3L_16097574_SNP [dm6]	A	T	5.112e^-7	0.002	UPSTREAM ms_3_72Dt & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	16090728	3L_16090728_SNP [dm3] 3L_16097628_SNP [dm6]	T	C	5.112e^-7	0.002	UPSTREAM ms_3_72Dt & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	16090944	3L_16090944_SNP [dm3] 3L_16097844_SNP [dm6]	G	T	5.112e^-7	0.002	UTR_5_PRIME ms_3_72Dt UPSTREAM CG13074
3L	16091882	3L_16091882_SNP [dm3] 3L_16098782_SNP [dm6]	G	A	5.112e^-7	0.002	SYNONYMOUS_CODING ms_3_72Dt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16093354	3L_16093354_SNP [dm3] 3L_16100254_SNP [dm6]	T	C	5.112e^-7	0.002	UPSTREAM CG5414 DOWNSTREAM ms_3_72Dt INTERGENIC
3L	16096186	3L_16096186_SNP [dm3] 3L_16103086_SNP [dm6]	G	A	5.112e^-7	0.002	NON_SYNONYMOUS_CODING CG5414 DOWNSTREAM IntS9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16100933	3L_16100933_SNP [dm3] 3L_16107833_SNP [dm6]	C	T	5.112e^-7	0.002	UTR_3_PRIME Zn72D INTRON Zn72D
3L	16107583	3L_16107583_SNP [dm3] 3L_16114483_SNP [dm6]	C	T	5.112e^-7	0.002	SYNONYMOUS_CODING Taf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	17597624	3L_17597624_SNP [dm3] 3L_17604524_SNP [dm6]	G	C	5.112e^-7	0.002	INTRON Eip74EF
3L	17597951	3L_17597951_SNP [dm3] 3L_17604851_SNP [dm6]	T	G	5.112e^-7	0.002	INTRON Eip74EF
3L	4023804	3L_4023804_SNP [dm3] 3L_4023804_SNP [dm6]	T	C	5.112e^-7	0.002	SYNONYMOUS_CODING CG11594 DOWNSTREAM Mul1	TF binding site mE1_TFBS_chinmo
3L	4292703	3L_4292703_SNP [dm3] 3L_4292703_SNP [dm6]	G	A	5.112e^-7	0.002	NON_SYNONYMOUS_CODING CG1319 UPSTREAM CG15012	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	7385161	3L_7385161_SNP [dm3] 3L_7392061_SNP [dm6]	A	T	5.112e^-7	0.002	INTRON CG8563
3L	7385165	3L_7385165_SNP [dm3] 3L_7392065_SNP [dm6]	C	G	5.112e^-7	0.002	INTRON CG8563
3L	7385168	3L_7385168_SNP [dm3] 3L_7392068_SNP [dm6]	G	A	5.112e^-7	0.002	INTRON CG8563
3L	7385183	3L_7385183_SNP [dm3] 3L_7392083_SNP [dm6]	C	T	5.112e^-7	0.002	INTRON CG8563
3R	11044734	3R_11044734_SNP [dm3] 3R_15219012_SNP [dm6]	C	A	5.112e^-7	0.002	UPSTREAM CG12241 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11044749	3R_11044749_SNP [dm3] 3R_15219027_SNP [dm6]	G	A	5.112e^-7	0.002	UPSTREAM CG12241 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11044864	3R_11044864_SNP [dm3] 3R_15219142_SNP [dm6]	A	C	5.112e^-7	0.002	UPSTREAM CG12241 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	12563077	3R_12563077_SNP [dm3] 3R_16737355_SNP [dm6]	C	T	5.112e^-7	0.002	INTERGENIC	regulatory region REDfly_CRMs
3R	12563105	3R_12563105_SNP [dm3] 3R_16737383_SNP [dm6]	C	T	5.112e^-7	0.002	INTERGENIC	regulatory region REDfly_CRMs
3R	13583915	3R_13583915_SNP [dm3] 3R_17758193_SNP [dm6]	G	A	5.112e^-7	0.002	INTRON TyrR
3R	15872378	3R_15872378_SNP [dm3] 3R_20046656_SNP [dm6]	A	C	5.112e^-7	0.002	DOWNSTREAM Indy-2 INTRON CG17193 & 2 others
3R	15872389	3R_15872389_SNP [dm3] 3R_20046667_SNP [dm6]	C	A	5.112e^-7	0.002	INTRON CG17193 & 2 others
3R	15872404	3R_15872404_SNP [dm3] 3R_20046682_SNP [dm6]	G	T	5.112e^-7	0.002	INTRON CG17193 & 2 others
3R	20607629	3R_20607629_SNP [dm3] 3R_24781907_SNP [dm6]	G	A	5.112e^-7	0.002	NON_SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_inv
3R	26487645	3R_26487645_SNP [dm3] 3R_30661923_SNP [dm6]	T	C	5.112e^-7	0.002	INTERGENIC
3R	26487728	3R_26487728_SNP [dm3] 3R_30662006_SNP [dm6]	T	C	5.112e^-7	0.002	INTERGENIC
3R	26503213	3R_26503213_SNP [dm3] 3R_30677491_SNP [dm6]	T	C	5.112e^-7	0.002	INTERGENIC
3R	26504902	3R_26504902_SNP [dm3] 3R_30679180_SNP [dm6]	C	A	5.112e^-7	0.002	INTERGENIC
3R	26521232	3R_26521232_SNP [dm3] 3R_30695510_SNP [dm6]	T	C	5.112e^-7	0.002	UPSTREAM CG12069 DOWNSTREAM Pka-C2 INTERGENIC
3R	6802169	3R_6802169_SNP [dm3] 3R_10976447_SNP [dm6]	T	C	5.112e^-7	0.002	INTRON CG34114
3R	6805252	3R_6805252_SNP [dm3] 3R_10979530_SNP [dm6]	C	T	5.112e^-7	0.002	INTRON CG34114
3R	6805311	3R_6805311_SNP [dm3] 3R_10979589_SNP [dm6]	A	G	5.112e^-7	0.002	INTRON CG34114
X	12821506	X_12821506_SNP [dm3] X_12927473_SNP [dm6]	A	T	5.112e^-7	0.002	INTRON fne
X	12821521	X_12821521_SNP [dm3] X_12927488_SNP [dm6]	C	T	5.112e^-7	0.002	INTRON fne
X	12821551	X_12821551_SNP [dm3] X_12927518_SNP [dm6]	T	A	5.112e^-7	0.002	INTRON fne
X	12821568	X_12821568_SNP [dm3] X_12927535_SNP [dm6]	C	A	5.112e^-7	0.002	INTRON fne
X	12821581	X_12821581_SNP [dm3] X_12927548_SNP [dm6]	T	A	5.112e^-7	0.002	INTRON fne
X	12821583	X_12821583_SNP [dm3] X_12927550_SNP [dm6]	A	T	5.112e^-7	0.002	INTRON fne
X	14966052	X_14966052_DEL [dm3] X_15072019_DEL [dm6]	GCGG	G	5.112e^-7	0.002	UTR_3_PRIME Lsd-2
X	17357483	X_17357483_SNP [dm3] X_17463450_SNP [dm6]	T	A	5.112e^-7	0.002	INTRON CG43658
X	17357484	X_17357484_SNP [dm3] X_17463451_SNP [dm6]	T	C	5.112e^-7	0.002	INTRON CG43658
X	17357506	X_17357506_SNP [dm3] X_17463473_SNP [dm6]	T	G	5.112e^-7	0.002	INTRON CG43658
X	17357507	X_17357507_SNP [dm3] X_17463474_SNP [dm6]	A	G	5.112e^-7	0.002	INTRON CG43658
X	19625160	X_19625160_SNP [dm3] X_19731127_SNP [dm6]	A	C	5.112e^-7	0.002	DOWNSTREAM CG12531 INTRON AP-1-2beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	19626677	X_19626677_SNP [dm3] X_19732644_SNP [dm6]	C	T	5.112e^-7	0.002	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19627159	X_19627159_SNP [dm3] X_19733126_SNP [dm6]	C	T	5.112e^-7	0.002	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19628194	X_19628194_SNP [dm3] X_19734161_SNP [dm6]	C	T	5.112e^-7	0.002	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad
X	19630439	X_19630439_SNP [dm3] X_19736406_SNP [dm6]	T	A	5.112e^-7	0.002	INTRON CG14234	TF binding site mE1_TFBS_cad
X	19630443	X_19630443_DEL [dm3] X_19736410_DEL [dm6]	TAGGTTGCTCAT...	T	5.112e^-7	0.002	INTRON CG14234	TF binding site mE1_TFBS_cad
X	20856284	X_20856284_SNP [dm3] X_20985257_SNP [dm6]	G	A	5.112e^-7	0.002	DOWNSTREAM CG11666 INTERGENIC
X	3148263	X_3148263_SNP [dm3] X_3254230_SNP [dm6]	T	A	5.112e^-7	0.002	INTRON dnc
X	4537654	X_4537654_SNP [dm3] X_4643621_SNP [dm6]	T	G	5.112e^-7	0.002	INTRON CG3081 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	6856066	X_6856066_SNP [dm3] X_6962033_SNP [dm6]	C	T	5.112e^-7	0.002	INTRON CG14431 & 1 other
2L	13881912	2L_13881912_SNP [dm3] 2L_13881912_SNP [dm6]	A	G	5.155e^-7	0.002	INTRON CenG1A
3L	11267525	3L_11267525_SNP [dm3] 3L_11274425_SNP [dm6]	T	A	5.265e^-7	0.002	EXON CR44720	TF binding site mE1_TFBS_HSA
2R	16608174	2R_16608174_SNP [dm3] 2R_20720669_SNP [dm6]	G	A	5.328e^-7	0.002	INTRON dpr
3L	15233489	3L_15233489_SNP [dm3] 3L_15240389_SNP [dm6]	G	A	5.369e^-7	0.002	UTR_3_PRIME Tollo
3R	3189678	3R_3189678_SNP [dm3] 3R_7363956_SNP [dm6]	G	T	5.565e^-7	0.002	UPSTREAM Mst84Dd DOWNSTREAM Mst84Dc INTERGENIC
2R	6305436	2R_6305436_INS [dm3] 2R_10417931_INS [dm6]	C	CCCATTTGGGTAC...	5.731e^-7	0.002	UPSTREAM CG42732 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	17719111	3R_17719111_SNP [dm3] 3R_21893389_SNP [dm6]	A	G	5.916e^-7	0.002	INTRON CG6678	TF binding site mE1_TFBS_cad
3R	7515446	3R_7515446_SNP [dm3] 3R_11689724_SNP [dm6]	A	C	5.954e^-7	0.002	SPLICE_SITE_DONOR CG6908 DOWNSTREAM CG18765 INTRON CG6908	TF binding site mE1_TFBS_cnc
2R	16598756	2R_16598756_SNP [dm3] 2R_20711251_SNP [dm6]	G	A	5.956e^-7	0.002	INTRON dpr
3L	5008812	3L_5008812_SNP [dm3] 3L_5008812_SNP [dm6]	C	T	5.972e^-7	0.002	INTRON Con
2R	4725971	2R_4725971_SNP [dm3] 2R_8838466_SNP [dm6]	T	A	5.983e^-7	0.002	INTRON sns	TF binding site mE1_TFBS_chinmo
2L	12966364	2L_12966364_SNP [dm3] 2L_12966364_SNP [dm6]	A	T	6.017e^-7	0.002	UPSTREAM CG16800 INTERGENIC
X	14316823	X_14316823_SNP [dm3] X_14422790_SNP [dm6]	G	T	6.033e^-7	0.002	INTRON dpr8	TF binding site mE1_TFBS_inv
3R	18864951	3R_18864951_SNP [dm3] 3R_23039229_SNP [dm6]	G	A	6.043e^-7	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	25581647	3R_25581647_DEL [dm3] 3R_29755925_DEL [dm6]	TGAAACT	T	6.087e^-7	0.002	EXON CR44953
3L	16287616	3L_16287616_SNP [dm3] 3L_16294516_SNP [dm6]	A	G	6.100e^-7	0.002	DOWNSTREAM CG4962 INTERGENIC	TF binding site mE1_TFBS_sbb
3L	16287768	3L_16287768_SNP [dm3] 3L_16294668_SNP [dm6]	T	A	6.100e^-7	0.002	DOWNSTREAM CG4962 INTERGENIC
3L	16287801	3L_16287801_INS [dm3] 3L_16294701_INS [dm6]	C	CAACACTGC	6.100e^-7	0.002	DOWNSTREAM CG4962 INTERGENIC
X	18183006	X_18183006_SNP [dm3] X_18288973_SNP [dm6]	C	A	6.101e^-7	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	9248319	3L_9248319_SNP [dm3] 3L_9255219_SNP [dm6]	A	C	6.134e^-7	0.002	INTRON GluRIB
X	6130983	X_6130983_SNP [dm3] X_6236950_SNP [dm6]	T	C	6.134e^-7	0.002	UPSTREAM CG14445 DOWNSTREAM CG14446 INTERGENIC
2R	13673339	2R_13673339_SNP [dm3] 2R_17785834_SNP [dm6]	C	T	6.155e^-7	0.002	UPSTREAM aft INTERGENIC
3R	26850594	3R_26850594_SNP [dm3] 3R_31024872_SNP [dm6]	A	C	6.211e^-7	0.002	INTERGENIC
2R	4742193	2R_4742193_SNP [dm3] 2R_8854688_SNP [dm6]	C	T	6.218e^-7	0.002	UTR_3_PRIME sns
2R	5064126	2R_5064126_SNP [dm3] 2R_9176621_SNP [dm6]	G	A	6.218e^-7	0.002	SYNONYMOUS_CODING Rme-8	TF binding site BDTNP1_TFBS_dl
2R	6972369	2R_6972369_SNP [dm3] 2R_11084864_SNP [dm6]	C	A	6.218e^-7	0.002	UPSTREAM CG43188 INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8339742	2R_8339742_SNP [dm3] 2R_12452237_SNP [dm6]	T	C	6.218e^-7	0.002	UTR_3_PRIME Dyb UPSTREAM Lac DOWNSTREAM Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	16091879	3L_16091879_SNP [dm3] 3L_16098779_SNP [dm6]	C	T	6.218e^-7	0.002	SYNONYMOUS_CODING ms_3_72Dt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16099022	3L_16099022_SNP [dm3] 3L_16105922_SNP [dm6]	A	C	6.218e^-7	0.002	UPSTREAM IntS9 DOWNSTREAM Zn72D INTRON CG43295
3L	4636500	3L_4636500_SNP [dm3] 3L_4636500_SNP [dm6]	C	A	6.218e^-7	0.002	DOWNSTREAM axo INTRON axo
3R	11042962	3R_11042962_SNP [dm3] 3R_15217240_SNP [dm6]	G	A	6.218e^-7	0.002	SYNONYMOUS_CODING SIDL	TF binding site mE1_TFBS_cad
3R	18218081	3R_18218081_SNP [dm3] 3R_22392359_SNP [dm6]	A	C	6.218e^-7	0.002	UTR_3_PRIME CG13857 DOWNSTREAM CG7059
3R	24441834	3R_24441834_SNP [dm3] 3R_28616112_SNP [dm6]	A	G	6.218e^-7	0.002	UTR_5_PRIME CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26490887	3R_26490887_SNP [dm3] 3R_30665165_SNP [dm6]	G	A	6.218e^-7	0.002	INTRON CR45191
3R	26523299	3R_26523299_SNP [dm3] 3R_30697577_SNP [dm6]	T	C	6.218e^-7	0.002	UPSTREAM Pka-C2 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8968761	3R_8968761_SNP [dm3] 3R_13143039_SNP [dm6]	C	T	6.218e^-7	0.002	INTRON timeout & 2 others
X	19626119	X_19626119_SNP [dm3] X_19732086_SNP [dm6]	C	T	6.218e^-7	0.002	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	19739485	X_19739485_SNP [dm3] X_19845452_SNP [dm6]	A	T	6.218e^-7	0.002	INTRON pico	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7086905	2R_7086905_SNP [dm3] 2R_11199400_SNP [dm6]	T	C	6.243e^-7	0.002	INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_zfh1
2R	7086920	2R_7086920_SNP [dm3] 2R_11199415_SNP [dm6]	C	G	6.243e^-7	0.002	INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16113377	3L_16113377_SNP [dm3] 3L_16120277_SNP [dm6]	T	A	6.243e^-7	0.002	UTR_3_PRIME Taf4	TF binding site mE1_TFBS_cad
2R	15477260	2R_15477260_SNP [dm3] 2R_19589755_SNP [dm6]	G	T	6.269e^-7	0.002	INTRON sm
2R	15945519	2R_15945519_SNP [dm3] 2R_20058014_SNP [dm6]	T	A	6.269e^-7	0.002	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
2R	15945645	2R_15945645_SNP [dm3] 2R_20058140_SNP [dm6]	A	G	6.269e^-7	0.002	EXON CR44631	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16703359	2R_16703359_SNP [dm3] 2R_20815854_SNP [dm6]	C	T	6.269e^-7	0.002	INTERGENIC
3L	9523928	3L_9523928_SNP [dm3] 3L_9530828_SNP [dm6]	A	T	6.269e^-7	0.002	SYNONYMOUS_CODING Or67a
3R	6070015	3R_6070015_SNP [dm3] 3R_10244293_SNP [dm6]	T	C	6.269e^-7	0.002	SYNONYMOUS_CODING CG42795
3R	6070412	3R_6070412_SNP [dm3] 3R_10244690_SNP [dm6]	A	C	6.269e^-7	0.002	NON_SYNONYMOUS_CODING CG42795	TF binding site mE1_TFBS_cad
3R	6070693	3R_6070693_SNP [dm3] 3R_10244971_SNP [dm6]	G	T	6.269e^-7	0.002	SYNONYMOUS_CODING CG42795	TF binding site mE1_TFBS_cad
3R	6070726	3R_6070726_SNP [dm3] 3R_10245004_SNP [dm6]	G	A	6.269e^-7	0.002	NON_SYNONYMOUS_CODING CG42795	TF binding site mE1_TFBS_cad
3R	6070735	3R_6070735_SNP [dm3] 3R_10245013_SNP [dm6]	T	C	6.269e^-7	0.002	SYNONYMOUS_CODING CG42795	TF binding site mE1_TFBS_cad
3R	6806402	3R_6806402_SNP [dm3] 3R_10980680_SNP [dm6]	G	C	6.269e^-7	0.002	INTRON CG34114	TF binding site mE1_TFBS_cad
X	2574671	X_2574671_SNP [dm3] X_2680638_SNP [dm6]	A	G	6.269e^-7	0.002	SYNONYMOUS_CODING HLH3B	TF binding site mE1_TFBS_chinmo
2R	17724005	2R_17724005_SNP [dm3] 2R_21836500_SNP [dm6]	T	C	6.269e^-7	0.002	UPSTREAM CG4377 INTERGENIC
3R	15873261	3R_15873261_SNP [dm3] 3R_20047539_SNP [dm6]	C	G	6.269e^-7	0.002	SPLICE_SITE_REGION Indy-2 & 1 other INTRON CG17193 & 2 others
3R	22770623	3R_22770623_SNP [dm3] 3R_26944901_SNP [dm6]	T	G	6.269e^-7	0.002	UTR_3_PRIME sda UPSTREAM CG14252	TF binding site mE1_TFBS_sbb
3R	23244259	3R_23244259_SNP [dm3] 3R_27418537_SNP [dm6]	T	C	6.269e^-7	0.002	UTR_5_PRIME side	TF binding site mE1_TFBS_HSA
X	2944753	X_2944753_SNP [dm3] X_3050720_SNP [dm6]	A	T	6.330e^-7	0.002	INTRON kirre
X	2944802	X_2944802_SNP [dm3] X_3050769_SNP [dm6]	G	A	6.330e^-7	0.002	INTRON kirre
2R	9645132	2R_9645132_SNP [dm3] 2R_13757627_SNP [dm6]	G	A	6.399e^-7	0.002	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_sens
2R	9646545	2R_9646545_SNP [dm3] 2R_13759040_SNP [dm6]	C	A	6.399e^-7	0.002	DOWNSTREAM CG6280 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11038972	3L_11038972_SNP [dm3] 3L_11045872_SNP [dm6]	T	C	6.399e^-7	0.002	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_Trl
3L	16083083	3L_16083083_SNP [dm3] 3L_16089983_SNP [dm6]	C	T	6.399e^-7	0.002	SYNONYMOUS_CODING CG5235 UPSTREAM ClC-c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7484216	3L_7484216_SNP [dm3] 3L_7491116_SNP [dm6]	C	A	6.399e^-7	0.002	UPSTREAM Cyp316a1 INTERGENIC
3R	12563560	3R_12563560_SNP [dm3] 3R_16737838_SNP [dm6]	T	C	6.399e^-7	0.002	INTERGENIC
3R	12736249	3R_12736249_SNP [dm3] 3R_16910527_SNP [dm6]	A	G	6.399e^-7	0.002	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	26483198	3R_26483198_SNP [dm3] 3R_30657476_SNP [dm6]	C	G	6.399e^-7	0.002	INTERGENIC
3R	3475135	3R_3475135_SNP [dm3] 3R_7649413_SNP [dm6]	C	T	6.399e^-7	0.002	INTERGENIC
3R	3490470	3R_3490470_SNP [dm3] 3R_7664748_SNP [dm6]	G	T	6.399e^-7	0.002	INTRON Nlg1
3R	3629905	3R_3629905_SNP [dm3] 3R_7804183_SNP [dm6]	C	T	6.399e^-7	0.002	NON_SYNONYMOUS_CODING CG18268 DOWNSTREAM CG2993
3R	3644006	3R_3644006_SNP [dm3] 3R_7818284_SNP [dm6]	G	A	6.399e^-7	0.002	INTRON CG34384
3L	15203160	3L_15203160_SNP [dm3] 3L_15210060_SNP [dm6]	G	A	6.467e^-7	0.002	INTERGENIC
2L	3949300	2L_3949300_SNP [dm3] 2L_3949300_SNP [dm6]	G	C	6.555e^-7	0.002	INTRON fred
3R	6219429	3R_6219429_SNP [dm3] 3R_10393707_SNP [dm6]	C	T	6.594e^-7	0.002	INTRON cwo
3L	14084008	3L_14084008_SNP [dm3] 3L_14090908_SNP [dm6]	C	T	6.623e^-7	0.002	INTERGENIC
2R	14549939	2R_14549939_INS [dm3] 2R_18662434_INS [dm6]	A	AT	6.656e^-7	0.002	UPSTREAM Gint3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14549944	2R_14549944_DEL [dm3] 2R_18662439_DEL [dm6]	GTC	G	6.656e^-7	0.002	UPSTREAM Gint3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19546452	2R_19546452_SNP [dm3] 2R_23658929_SNP [dm6]	A	C	6.656e^-7	0.002	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	3546593	2R_3546593_SNP [dm3] 2R_7659088_SNP [dm6]	A	T	6.656e^-7	0.002	DOWNSTREAM CG1339 & 1 other INTERGENIC
2R	3546611	2R_3546611_SNP [dm3] 2R_7659106_SNP [dm6]	A	G	6.656e^-7	0.002	DOWNSTREAM CG1339 & 1 other INTERGENIC
2R	5217280	2R_5217280_SNP [dm3] 2R_9329775_SNP [dm6]	T	C	6.656e^-7	0.002	INTRON CG13954 & 1 other
X	18996109	X_18996109_INS [dm3] X_19102076_INS [dm6]	C	CTCGAAAAT	6.692e^-7	0.002	INTERGENIC
3L	16095496	3L_16095496_SNP [dm3] 3L_16102396_SNP [dm6]	C	T	6.735e^-7	0.002	NON_SYNONYMOUS_CODING CG5414 SPLICE_SITE_REGION CG5414
3L	16101074	3L_16101074_SNP [dm3] 3L_16107974_SNP [dm6]	G	T	6.750e^-7	0.002	UTR_3_PRIME Zn72D INTRON Zn72D
3L	16145813	3L_16145813_DEL [dm3] 3L_16152713_DEL [dm6]	TT	T	6.750e^-7	0.002	INTRON CG5151	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7072929	3L_7072929_SNP [dm3] 3L_7079829_SNP [dm6]	G	T	6.752e^-7	0.002	INTERGENIC
2R	14169330	2R_14169330_SNP [dm3] 2R_18281825_SNP [dm6]	G	A	6.787e^-7	0.002	NON_SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19548249	2R_19548249_SNP [dm3] 2R_23660726_SNP [dm6]	A	G	6.787e^-7	0.002	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19548250	2R_19548250_SNP [dm3] 2R_23660727_SNP [dm6]	T	C	6.787e^-7	0.002	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8322734	2R_8322734_SNP [dm3] 2R_12435229_SNP [dm6]	G	C	6.844e^-7	0.002	NON_SYNONYMOUS_CODING DUBAI UPSTREAM CG30051	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15169694	3R_15169694_SNP [dm3] 3R_19343972_SNP [dm6]	G	A	6.889e^-7	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7536117	2L_7536117_SNP [dm3] 2L_7536117_SNP [dm6]	A	T	6.925e^-7	0.002	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	23709902	3R_23709902_SNP [dm3] 3R_27884180_SNP [dm6]	C	T	6.972e^-7	0.002	INTRON CG34353
3R	23710776	3R_23710776_SNP [dm3] 3R_27885054_SNP [dm6]	G	A	6.972e^-7	0.002	INTRON CG34353
3R	23710850	3R_23710850_SNP [dm3] 3R_27885128_SNP [dm6]	A	T	6.972e^-7	0.002	INTRON CG34353
3R	23712761	3R_23712761_INS [dm3] 3R_27887039_INS [dm6]	C	CC	6.972e^-7	0.002	INTRON CG34353
3L	8149188	3L_8149188_SNP [dm3] 3L_8156088_SNP [dm6]	G	C	6.978e^-7	0.002	INTRON CG42445
X	15079333	X_15079333_SNP [dm3] X_15185300_SNP [dm6]	C	T	6.993e^-7	0.002	INTRON CG43737
2L	11934124	2L_11934124_SNP [dm3] 2L_11934124_SNP [dm6]	G	C	7.130e^-7	0.002	UPSTREAM Or33a INTERGENIC
2L	11934132	2L_11934132_SNP [dm3] 2L_11934132_SNP [dm6]	G	A	7.130e^-7	0.002	UPSTREAM Or33a INTERGENIC
2L	11934135	2L_11934135_SNP [dm3] 2L_11934135_SNP [dm6]	A	T	7.130e^-7	0.002	UPSTREAM Or33a INTERGENIC
2R	17780984	2R_17780984_SNP [dm3] 2R_21893479_SNP [dm6]	C	T	7.243e^-7	0.003	INTRON Fili
3L	8950427	3L_8950427_SNP [dm3] 3L_8957327_SNP [dm6]	G	A	7.265e^-7	0.003	SYNONYMOUS_CODING mRpL12 DOWNSTREAM GNBP3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	25397066	3R_25397066_SNP [dm3] 3R_29571344_SNP [dm6]	G	A	7.271e^-7	0.003	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8694166	3L_8694166_SNP [dm3] 3L_8701066_SNP [dm6]	A	T	7.286e^-7	0.003	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	18724627	X_18724627_SNP [dm3] X_18830594_SNP [dm6]	C	T	7.330e^-7	0.003	UTR_5_PRIME CG7101 DOWNSTREAM CG42450	TF binding site mE1_TFBS_cad
2R	16599066	2R_16599066_SNP [dm3] 2R_20711561_SNP [dm6]	G	C	7.340e^-7	0.003	INTRON dpr
2R	16599149	2R_16599149_SNP [dm3] 2R_20711644_SNP [dm6]	G	A	7.340e^-7	0.003	INTRON dpr
2R	5017001	2R_5017001_SNP [dm3] 2R_9129496_SNP [dm6]	T	C	7.350e^-7	0.003	INTRON CG18659
3R	26108602	3R_26108602_SNP [dm3] 3R_30282880_SNP [dm6]	C	A	7.350e^-7	0.003	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	2394563	2L_2394563_SNP [dm3] 2L_2394563_SNP [dm6]	C	A	7.388e^-7	0.003	INTRON VGlut
3R	1193486	3R_1193486_SNP [dm3] 3R_5367764_SNP [dm6]	A	G	7.395e^-7	0.003	UPSTREAM CR44103 INTRON Cerk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15718635	3R_15718635_SNP [dm3] 3R_19892913_SNP [dm6]	G	A	7.416e^-7	0.003	SYNONYMOUS_CODING CG4733	TF binding site mE1_TFBS_cad
2R	15945598	2R_15945598_SNP [dm3] 2R_20058093_SNP [dm6]	G	A	7.451e^-7	0.003	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	2971453	2R_2971453_SNP [dm3] 2R_7083948_SNP [dm6]	T	C	7.465e^-7	0.003	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15788937	2R_15788937_SNP [dm3] 2R_19901432_SNP [dm6]	G	C	7.493e^-7	0.003	INTERGENIC
3L	18776525	3L_18776525_SNP [dm3] 3L_18783425_SNP [dm6]	C	A	7.518e^-7	0.003	INTRON ftz-f1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9240675	2R_9240675_SNP [dm3] 2R_13353170_SNP [dm6]	C	T	7.561e^-7	0.003	DOWNSTREAM CG17048 INTRON CR44206
3L	17447197	3L_17447197_SNP [dm3] 3L_17454097_SNP [dm6]	A	G	7.561e^-7	0.003	UTR_3_PRIME CG18265
3R	26136115	3R_26136115_SNP [dm3] 3R_30310393_SNP [dm6]	A	G	7.561e^-7	0.003	INTRON hdc
3R	7520441	3R_7520441_DEL [dm3] 3R_11694719_DEL [dm6]	AAAAATA	A	7.561e^-7	0.003	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	7520451	3R_7520451_SNP [dm3] 3R_11694729_SNP [dm6]	G	T	7.561e^-7	0.003	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	5049118	3R_5049118_INS [dm3] 3R_9223396_INS [dm6]	C	CTC	7.568e^-7	0.003	INTRON pum
X	19627291	X_19627291_SNP [dm3] X_19733258_SNP [dm6]	C	T	7.568e^-7	0.003	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2944703	X_2944703_SNP [dm3] X_3050670_SNP [dm6]	G	T	7.591e^-7	0.003	INTRON kirre
3L	12041112	3L_12041112_SNP [dm3] 3L_12048012_SNP [dm6]	T	A	7.626e^-7	0.003	INTRON rols
3L	12041120	3L_12041120_SNP [dm3] 3L_12048020_SNP [dm6]	A	T	7.626e^-7	0.003	INTRON rols
3L	8961436	3L_8961436_SNP [dm3] 3L_8968336_SNP [dm6]	A	T	7.626e^-7	0.003	UPSTREAM CG5026 DOWNSTREAM CG5021 INTERGENIC
3R	6056134	3R_6056134_SNP [dm3] 3R_10230412_SNP [dm6]	T	A	7.626e^-7	0.003	INTRON CG42795
3R	6805090	3R_6805090_SNP [dm3] 3R_10979368_SNP [dm6]	A	T	7.626e^-7	0.003	INTRON CG34114
3R	6805101	3R_6805101_SNP [dm3] 3R_10979379_SNP [dm6]	C	A	7.626e^-7	0.003	INTRON CG34114
3L	13297851	3L_13297851_SNP [dm3] 3L_13304751_SNP [dm6]	A	G	7.662e^-7	0.003	DOWNSTREAM CR44555 INTERGENIC
X	14601719	X_14601719_SNP [dm3] X_14707686_SNP [dm6]	G	A	7.672e^-7	0.003	INTRON NetB
3R	17741951	3R_17741951_SNP [dm3] 3R_21916229_SNP [dm6]	T	C	7.689e^-7	0.003	DOWNSTREAM CG17843 INTERGENIC
2R	5053204	2R_5053204_SNP [dm3] 2R_9165699_SNP [dm6]	T	C	7.699e^-7	0.003	UTR_5_PRIME Rad51C UPSTREAM CG8046 DOWNSTREAM CG42382	TF binding site BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	17109729	2R_17109729_SNP [dm3] 2R_21222224_SNP [dm6]	A	G	7.756e^-7	0.003	INTRON ASPP	TF binding site mE1_TFBS_cad
2R	17109742	2R_17109742_SNP [dm3] 2R_21222237_SNP [dm6]	T	G	7.756e^-7	0.003	INTRON ASPP	TF binding site mE1_TFBS_cad
2R	17839441	2R_17839441_SNP [dm3] 2R_21951936_SNP [dm6]	G	A	7.758e^-7	0.003	SYNONYMOUS_CODING CG13488
X	5225166	X_5225166_SNP [dm3] X_5331133_SNP [dm6]	T	C	7.792e^-7	0.003	NON_SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21110752	3R_21110752_SNP [dm3] 3R_25285030_SNP [dm6]	T	A	7.846e^-7	0.003	SYNONYMOUS_CODING CG31300 UPSTREAM CG31104
3L	22856769	3L_22856769_SNP [dm3] 3L_22863669_SNP [dm6]	C	A	7.847e^-7	0.003	UPSTREAM CG33169 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_cad
2R	9095348	2R_9095348_SNP [dm3] 2R_13207843_SNP [dm6]	G	A	7.875e^-7	0.003	NON_SYNONYMOUS_CODING FLASH	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9106290	2R_9106290_SNP [dm3] 2R_13218785_SNP [dm6]	G	T	7.875e^-7	0.003	DOWNSTREAM CG4646 INTRON CG4630	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9108835	2R_9108835_SNP [dm3] 2R_13221330_SNP [dm6]	G	T	7.875e^-7	0.003	SYNONYMOUS_CODING Fsn DOWNSTREAM CG17059	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	26850629	3R_26850629_SNP [dm3] 3R_31024907_SNP [dm6]	A	G	7.908e^-7	0.003	INTERGENIC
2R	19074713	2R_19074713_SNP [dm3] 2R_23187190_SNP [dm6]	G	A	7.918e^-7	0.003	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	9641082	2R_9641082_SNP [dm3] 2R_13753577_SNP [dm6]	C	G	8.021e^-7	0.003	UPSTREAM CG6280 INTERGENIC
3L	16108425	3L_16108425_SNP [dm3] 3L_16115325_SNP [dm6]	T	A	8.021e^-7	0.003	INTRON Taf4	TF binding site BDTNP1_TFBS_dl
3R	21110740	3R_21110740_SNP [dm3] 3R_25285018_SNP [dm6]	G	C	8.021e^-7	0.003	NON_SYNONYMOUS_CODING CG31300 UPSTREAM CG31104
3R	3471465	3R_3471465_SNP [dm3] 3R_7645743_SNP [dm6]	T	G	8.021e^-7	0.003	INTERGENIC
3R	15370151	3R_15370151_SNP [dm3] 3R_19544429_SNP [dm6]	T	A	8.051e^-7	0.003	INTRON Dys
2R	19546308	2R_19546308_SNP [dm3] 2R_23658785_SNP [dm6]	T	C	8.091e^-7	0.003	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19546318	2R_19546318_SNP [dm3] 2R_23658795_SNP [dm6]	T	C	8.091e^-7	0.003	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19548142	2R_19548142_SNP [dm3] 2R_23660619_SNP [dm6]	C	T	8.091e^-7	0.003	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	4748297	2R_4748297_SNP [dm3] 2R_8860792_SNP [dm6]	G	A	8.091e^-7	0.003	INTRON RyR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7086928	2R_7086928_SNP [dm3] 2R_11199423_SNP [dm6]	T	C	8.127e^-7	0.003	INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_zfh1
3R	16899785	3R_16899785_SNP [dm3] 3R_21074063_SNP [dm6]	T	A	8.157e^-7	0.003	SYNONYMOUS_CODING dmrt93B UPSTREAM r-l
2R	19874163	2R_19874163_SNP [dm3] 2R_23986640_SNP [dm6]	C	G	8.183e^-7	0.003	UTR_5_PRIME CG30178 INTRON Phm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	9646821	2R_9646821_SNP [dm3] 2R_13759316_SNP [dm6]	G	A	8.229e^-7	0.003	DOWNSTREAM CG6280 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	9652428	2R_9652428_SNP [dm3] 2R_13764923_SNP [dm6]	G	T	8.229e^-7	0.003	INTERGENIC
2R	9657094	2R_9657094_SNP [dm3] 2R_13769589_SNP [dm6]	C	T	8.229e^-7	0.003	UPSTREAM Cpr50Ca INTERGENIC
3L	12571439	3L_12571439_SNP [dm3] 3L_12578339_SNP [dm6]	A	G	8.229e^-7	0.003	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	19367175	3L_19367175_SNP [dm3] 3L_19374075_SNP [dm6]	G	A	8.229e^-7	0.003	INTRON CG32206
3L	19418740	3L_19418740_SNP [dm3] 3L_19425640_SNP [dm6]	A	G	8.229e^-7	0.003	DOWNSTREAM CR42838 INTERGENIC
3L	3350119	3L_3350119_DEL [dm3] 3L_3350119_DEL [dm6]	CT	C	8.229e^-7	0.003	UTR_5_PRIME kst INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3350128	3L_3350128_SNP [dm3] 3L_3350128_SNP [dm6]	G	C	8.229e^-7	0.003	UTR_5_PRIME kst INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17872781	X_17872781_SNP [dm3] X_17978748_SNP [dm6]	T	C	8.229e^-7	0.003	INTRON Sh
X	17872815	X_17872815_SNP [dm3] X_17978782_SNP [dm6]	G	C	8.229e^-7	0.003	INTRON Sh
3L	9770453	3L_9770453_SNP [dm3] 3L_9777353_SNP [dm6]	T	C	8.252e^-7	0.003	INTRON CG8177
3L	9770485	3L_9770485_SNP [dm3] 3L_9777385_SNP [dm6]	C	G	8.252e^-7	0.003	INTRON CG8177
3L	9770499	3L_9770499_INS [dm3] 3L_9777399_INS [dm6]	A	ACTTTCA	8.252e^-7	0.003	INTRON CG8177
3L	9770551	3L_9770551_SNP [dm3] 3L_9777451_SNP [dm6]	A	C	8.252e^-7	0.003	INTRON CG8177
2R	4470189	2R_4470189_SNP [dm3] 2R_8582684_SNP [dm6]	T	G	8.297e^-7	0.003	INTRON CG42326
3R	3165162	3R_3165162_SNP [dm3] 3R_7339440_SNP [dm6]	G	T	8.377e^-7	0.003	INTERGENIC
3L	4160704	3L_4160704_SNP [dm3] 3L_4160704_SNP [dm6]	A	G	8.411e^-7	0.003	UTR_5_PRIME nab DOWNSTREAM mas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	11934021	2L_11934021_SNP [dm3] 2L_11934021_SNP [dm6]	T	A	8.445e^-7	0.003	UPSTREAM Or33a INTERGENIC
3L	13298766	3L_13298766_SNP [dm3] 3L_13305666_SNP [dm6]	C	T	8.458e^-7	0.003	INTERGENIC
3L	16108248	3L_16108248_SNP [dm3] 3L_16115148_SNP [dm6]	T	C	8.458e^-7	0.003	INTRON Taf4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19626170	X_19626170_SNP [dm3] X_19732137_SNP [dm6]	T	C	8.458e^-7	0.003	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	16273927	2R_16273927_SNP [dm3] 2R_20386422_SNP [dm6]	T	A	8.495e^-7	0.003	INTERGENIC
2R	16273933	2R_16273933_SNP [dm3] 2R_20386428_SNP [dm6]	T	G	8.495e^-7	0.003	INTERGENIC
2R	16273939	2R_16273939_SNP [dm3] 2R_20386434_SNP [dm6]	A	G	8.495e^-7	0.003	INTERGENIC
2R	16273942	2R_16273942_SNP [dm3] 2R_20386437_SNP [dm6]	T	A	8.495e^-7	0.003	INTERGENIC
3R	23711911	3R_23711911_SNP [dm3] 3R_27886189_SNP [dm6]	A	G	8.591e^-7	0.003	INTRON CG34353
2R	8308998	2R_8308998_SNP [dm3] 2R_12421493_SNP [dm6]	A	G	8.673e^-7	0.003	SYNONYMOUS_CODING CG8834	TF binding site mE1_TFBS_cad
2R	11490347	2R_11490347_SNP [dm3] 2R_15602842_SNP [dm6]	T	C	8.732e^-7	0.003	INTERGENIC
2R	19546440	2R_19546440_INS [dm3] 2R_23658917_INS [dm6]	A	AGTTGAG	8.787e^-7	0.003	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19546444	2R_19546444_INS [dm3] 2R_23658921_INS [dm6]	A	AGTACTTTCCATGTGAGCCC...	8.787e^-7	0.003	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	12015393	3L_12015393_SNP [dm3] 3L_12022293_SNP [dm6]	C	T	8.812e^-7	0.003	INTRON rols
X	11819397	X_11819397_SNP [dm3] X_11925364_SNP [dm6]	A	C	8.882e^-7	0.003	UPSTREAM Sclp INTERGENIC
X	11819447	X_11819447_SNP [dm3] X_11925414_SNP [dm6]	A	G	8.882e^-7	0.003	UPSTREAM Sclp INTERGENIC
X	11819454	X_11819454_SNP [dm3] X_11925421_SNP [dm6]	T	C	8.882e^-7	0.003	UPSTREAM Sclp INTERGENIC
3R	20117717	3R_20117717_SNP [dm3] 3R_24291995_SNP [dm6]	C	G	8.894e^-7	0.003	UTR_3_PRIME CG6364 INTRON CG6364
3L	15228802	3L_15228802_SNP [dm3] 3L_15235702_SNP [dm6]	G	A	8.960e^-7	0.003	UTR_5_PRIME Tollo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	11934229	2L_11934229_SNP [dm3] 2L_11934229_SNP [dm6]	G	T	8.960e^-7	0.003	UPSTREAM Or33a INTERGENIC
2L	10986023	2L_10986023_SNP [dm3] 2L_10986023_SNP [dm6]	C	A	8.983e^-7	0.003	NON_SYNONYMOUS_CODING piwi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	18192544	X_18192544_SNP [dm3] X_18298511_SNP [dm6]	T	C	9.017e^-7	0.003	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	8373758	3R_8373758_SNP [dm3] 3R_12548036_SNP [dm6]	A	T	9.018e^-7	0.003	UTR_5_PRIME Octbeta3R
3R	25307798	3R_25307798_SNP [dm3] 3R_29482076_SNP [dm6]	C	G	9.021e^-7	0.003	SYNONYMOUS_CODING Ptp99A
X	13185802	X_13185802_SNP [dm3] X_13291769_SNP [dm6]	A	G	9.105e^-7	0.003	SYNONYMOUS_CODING CG15744	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18523354	3R_18523354_SNP [dm3] 3R_22697632_SNP [dm6]	A	T	9.132e^-7	0.003	UPSTREAM Cyp6d4 INTRON cd
2R	8717885	2R_8717885_SNP [dm3] 2R_12830380_SNP [dm6]	C	A	9.194e^-7	0.003	INTERGENIC
3R	22587173	3R_22587173_SNP [dm3] 3R_26761451_SNP [dm6]	A	G	9.226e^-7	0.003	INTERGENIC
2R	12848157	2R_12848157_SNP [dm3] 2R_16960652_SNP [dm6]	T	C	9.277e^-7	0.003	UPSTREAM CG9010 INTERGENIC
3R	22215973	3R_22215973_SNP [dm3] 3R_26390251_SNP [dm6]	C	G	9.285e^-7	0.003	INTERGENIC
3R	8373686	3R_8373686_SNP [dm3] 3R_12547964_SNP [dm6]	C	T	9.285e^-7	0.003	UTR_5_PRIME Octbeta3R
3R	12715000	3R_12715000_SNP [dm3] 3R_16889278_SNP [dm6]	G	A	9.411e^-7	0.003	INTRON iab-8
3R	17810430	3R_17810430_SNP [dm3] 3R_21984708_SNP [dm6]	G	A	9.411e^-7	0.003	INTRON Eip93F
3R	19997107	3R_19997107_SNP [dm3] 3R_24171385_SNP [dm6]	A	G	9.411e^-7	0.003	INTERGENIC
3R	19997245	3R_19997245_SNP [dm3] 3R_24171523_SNP [dm6]	G	A	9.411e^-7	0.003	INTERGENIC
3R	19997253	3R_19997253_SNP [dm3] 3R_24171531_SNP [dm6]	T	C	9.411e^-7	0.003	INTERGENIC
2R	17845852	2R_17845852_SNP [dm3] 2R_21958347_SNP [dm6]	C	T	9.437e^-7	0.003	INTERGENIC
3R	3234256	3R_3234256_SNP [dm3] 3R_7408534_SNP [dm6]	C	T	9.478e^-7	0.003	NON_SYNONYMOUS_CODING Ir84a
2R	12296156	2R_12296156_SNP [dm3] 2R_16408651_SNP [dm6]	C	T	9.521e^-7	0.003	INTRON Sema-2b
3R	6064668	3R_6064668_SNP [dm3] 3R_10238946_SNP [dm6]	G	A	9.546e^-7	0.003	INTRON CG42795
3R	23887295	3R_23887295_SNP [dm3] 3R_28061573_SNP [dm6]	T	A	9.546e^-7	0.003	INTRON CG34362
3R	13552046	3R_13552046_SNP [dm3] 3R_17726324_SNP [dm6]	A	G	9.556e^-7	0.003	INTRON Lgr1	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
2R	10954445	2R_10954445_SNP [dm3] 2R_15066940_SNP [dm6]	G	A	9.623e^-7	0.003	INTERGENIC
X	2944731	X_2944731_SNP [dm3] X_3050698_SNP [dm6]	C	G	9.650e^-7	0.003	INTRON kirre
3L	8174557	3L_8174557_SNP [dm3] 3L_8181457_SNP [dm6]	G	A	9.658e^-7	0.003	SYNONYMOUS_CODING CG7979 UPSTREAM mthl7
2R	8928961	2R_8928961_SNP [dm3] 2R_13041456_SNP [dm6]	T	A	9.700e^-7	0.003	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	5562385	2L_5562385_SNP [dm3] 2L_5562385_SNP [dm6]	T	C	9.725e^-7	0.003	INTRON GluRIIB	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	6863742	3R_6863742_DEL [dm3] 3R_11038020_DEL [dm6]	TGCC	T	9.826e^-7	0.003	INTRON CG34114
2R	15740067	2R_15740067_SNP [dm3] 2R_19852562_SNP [dm6]	G	A	9.866e^-7	0.003	INTERGENIC
4	824977	4_824977_SNP [dm3] 4_804351_SNP [dm6]	G	C	9.901e^-7	0.003	UPSTREAM Sox102F INTRON Sox102F	transposable element FlyBase
2R	9651132	2R_9651132_SNP [dm3] 2R_13763627_SNP [dm6]	C	T	9.913e^-7	0.003	INTERGENIC
3L	19368104	3L_19368104_SNP [dm3] 3L_19375004_SNP [dm6]	G	T	9.935e^-7	0.003	INTRON CG32206
3L	5845188	3L_5845188_SNP [dm3] 3L_5852088_SNP [dm6]	G	A	9.940e^-7	0.003	INTERGENIC
3R	6056140	3R_6056140_SNP [dm3] 3R_10230418_SNP [dm6]	G	A	1.002e^-6	0.003	INTRON CG42795
2R	12674935	2R_12674935_SNP [dm3] 2R_16787430_SNP [dm6]	G	A	1.012e^-6	0.003	UTR_5_PRIME CG5522 INTRON CG5522
2R	4335604	2R_4335604_SNP [dm3] 2R_8448099_SNP [dm6]	G	A	1.012e^-6	0.003	SPLICE_SITE_REGION Cyp4e1 DOWNSTREAM Cyp4e2 INTRON Cyp4e1
3R	11108464	3R_11108464_SNP [dm3] 3R_15282742_SNP [dm6]	C	G	1.015e^-6	0.003	INTRON Tm1	TF binding site mE1_TFBS_Trl
3L	10847464	3L_10847464_SNP [dm3] 3L_10854364_SNP [dm6]	C	T	1.020e^-6	0.003	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18016082	3L_18016082_SNP [dm3] 3L_18022982_SNP [dm6]	T	C	1.020e^-6	0.003	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3R	10286588	3R_10286588_SNP [dm3] 3R_14460866_SNP [dm6]	A	T	1.021e^-6	0.003	INTRON cv-c
X	18213998	X_18213998_SNP [dm3] X_18319965_SNP [dm6]	A	T	1.021e^-6	0.003	INTRON CG6023
3L	9770556	3L_9770556_INS [dm3] 3L_9777456_INS [dm6]	T	TGTTT	1.031e^-6	0.003	INTRON CG8177
3L	9822875	3L_9822875_SNP [dm3] 3L_9829775_SNP [dm6]	C	A	1.031e^-6	0.003	UTR_5_PRIME CG43897 INTRON CG43897
2R	16274016	2R_16274016_SNP [dm3] 2R_20386511_SNP [dm6]	T	C	1.038e^-6	0.003	INTERGENIC
2R	15830064	2R_15830064_SNP [dm3] 2R_19942559_SNP [dm6]	G	C	1.038e^-6	0.003	INTERGENIC
3L	22820713	3L_22820713_SNP [dm3] 3L_22827613_SNP [dm6]	T	C	1.044e^-6	0.003	INTRON jim
X	17081713	X_17081713_SNP [dm3] X_17187680_SNP [dm6]	C	T	1.047e^-6	0.003	INTRON baz
3R	26281856	3R_26281856_SNP [dm3] 3R_30456134_SNP [dm6]	G	T	1.050e^-6	0.003	UPSTREAM aralar1 DOWNSTREAM CG2224 INTERGENIC
3L	19370107	3L_19370107_SNP [dm3] 3L_19377007_SNP [dm6]	G	A	1.050e^-6	0.003	INTRON CG32206
3L	5844025	3L_5844025_INS [dm3] 3L_5850925_INS [dm6]	C	CTGGC	1.050e^-6	0.003	INTERGENIC
X	10913424	X_10913424_DEL [dm3] X_11019391_DEL [dm6]	CC	C	1.054e^-6	0.003	INTRON CG42339
X	21982954	X_21982954_SNP [dm3] X_22581118_SNP [dm6]	A	G	1.054e^-6	0.003	INTERGENIC
X	19738957	X_19738957_SNP [dm3] X_19844924_SNP [dm6]	C	T	1.061e^-6	0.003	INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3481711	3R_3481711_SNP [dm3] 3R_7655989_SNP [dm6]	C	A	1.061e^-6	0.003	INTERGENIC
2L	11934215	2L_11934215_SNP [dm3] 2L_11934215_SNP [dm6]	T	A	1.062e^-6	0.003	UPSTREAM Or33a INTERGENIC
3L	22860784	3L_22860784_SNP [dm3] 3L_22867684_SNP [dm6]	G	A	1.068e^-6	0.003	SYNONYMOUS_CODING CG11137 DOWNSTREAM Arf79F & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	17158188	2R_17158188_SNP [dm3] 2R_21270683_SNP [dm6]	C	T	1.068e^-6	0.003	INTRON Rgk3
2L	10379770	2L_10379770_SNP [dm3] 2L_10379770_SNP [dm6]	C	T	1.073e^-6	0.003	UTR_3_PRIME dpr19 UPSTREAM gny	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	9152039	2R_9152039_SNP [dm3] 2R_13264534_SNP [dm6]	G	A	1.082e^-6	0.003	NON_SYNONYMOUS_CODING CG42319 DOWNSTREAM CG42319
3L	15214237	3L_15214237_SNP [dm3] 3L_15221137_SNP [dm6]	A	T	1.082e^-6	0.003	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22907692	3R_22907692_SNP [dm3] 3R_27081970_SNP [dm6]	G	C	1.083e^-6	0.003	NON_SYNONYMOUS_CODING CG14257 INTRON CG14257	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22148351	3R_22148351_INS [dm3] 3R_26322629_INS [dm6]	C	CACC	1.085e^-6	0.003	INTRON CG33970	TF binding site mE1_TFBS_inv
2L	5574038	2L_5574038_SNP [dm3] 2L_5574038_SNP [dm6]	C	T	1.092e^-6	0.003	INTERGENIC
3R	10628528	3R_10628528_SNP [dm3] 3R_14802806_SNP [dm6]	G	C	1.093e^-6	0.003	SYNONYMOUS_CODING CG14857
X	16510565	X_16510565_SNP [dm3] X_16616532_SNP [dm6]	A	G	1.099e^-6	0.003	INTRON CG9782	TF binding site BDTNP1_TFBS_twi
3R	26941213	3R_26941213_SNP [dm3] 3R_31115491_SNP [dm6]	C	A	1.099e^-6	0.003	INTERGENIC
3R	15169488	3R_15169488_SNP [dm3] 3R_19343766_SNP [dm6]	A	T	1.099e^-6	0.003	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19997176	3R_19997176_SNP [dm3] 3R_24171454_SNP [dm6]	G	A	1.102e^-6	0.003	INTERGENIC
3R	14335077	3R_14335077_DEL [dm3] 3R_18509355_DEL [dm6]	ATTTGCCTCACTTGCACTA...	A	1.110e^-6	0.003	INTRON fru
3R	23710799	3R_23710799_SNP [dm3] 3R_27885077_SNP [dm6]	C	A	1.112e^-6	0.003	INTRON CG34353
3R	3471120	3R_3471120_SNP [dm3] 3R_7645398_SNP [dm6]	A	C	1.119e^-6	0.003	INTERGENIC
3R	23873666	3R_23873666_SNP [dm3] 3R_28047944_SNP [dm6]	C	A	1.125e^-6	0.003	INTRON CG34362
X	20318815	X_20318815_SNP [dm3] X_20447788_SNP [dm6]	G	A	1.125e^-6	0.003	INTERGENIC
3R	9726313	3R_9726313_SNP [dm3] 3R_13900591_SNP [dm6]	G	T	1.127e^-6	0.003	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7316569	3L_7316569_SNP [dm3] 3L_7323469_SNP [dm6]	A	G	1.130e^-6	0.003	UPSTREAM Rint1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
X	11704952	X_11704952_SNP [dm3] X_11810919_SNP [dm6]	T	C	1.144e^-6	0.003	INTRON CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11705577	X_11705577_SNP [dm3] X_11811544_SNP [dm6]	A	T	1.144e^-6	0.003	INTRON CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
X	11706731	X_11706731_SNP [dm3] X_11812698_SNP [dm6]	G	C	1.144e^-6	0.003	INTRON CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	22898178	3R_22898178_SNP [dm3] 3R_27072456_SNP [dm6]	C	G	1.145e^-6	0.003	INTERGENIC	TF binding site mE1_TFBS_cad
3L	19334498	3L_19334498_SNP [dm3] 3L_19341398_SNP [dm6]	A	G	1.148e^-6	0.003	UTR_3_PRIME CG32206
3R	3513428	3R_3513428_SNP [dm3] 3R_7687706_SNP [dm6]	C	T	1.151e^-6	0.003	INTRON Nlg1
3R	16797140	3R_16797140_SNP [dm3] 3R_20971418_SNP [dm6]	C	A	1.162e^-6	0.003	INTRON Atpalpha
3L	10852964	3L_10852964_DEL [dm3] 3L_10859864_DEL [dm6]	GATACTG	G	1.164e^-6	0.003	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12870782	3L_12870782_INS [dm3] 3L_12877682_INS [dm6]	T	TATT	1.166e^-6	0.003	INTERGENIC
X	2659263	X_2659263_SNP [dm3] X_2765230_SNP [dm6]	C	T	1.167e^-6	0.003	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	20028022	2R_20028022_SNP [dm3] 2R_24140499_SNP [dm6]	G	A	1.168e^-6	0.003	INTRON Dat
2R	20028633	2R_20028633_SNP [dm3] 2R_24141110_SNP [dm6]	T	C	1.168e^-6	0.003	INTRON Dat
X	2944732	X_2944732_SNP [dm3] X_3050699_SNP [dm6]	A	T	1.173e^-6	0.003	INTRON kirre
3R	13926543	3R_13926543_SNP [dm3] 3R_18100821_SNP [dm6]	G	A	1.175e^-6	0.003	INTRON sr
3R	26284007	3R_26284007_SNP [dm3] 3R_30458285_SNP [dm6]	G	A	1.176e^-6	0.003	SYNONYMOUS_CODING CG2224	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11324236	3R_11324236_INS [dm3] 3R_15498514_INS [dm6]	T	TT	1.178e^-6	0.003	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	12563167	3R_12563167_SNP [dm3] 3R_16737445_SNP [dm6]	G	T	1.178e^-6	0.003	INTERGENIC	regulatory region REDfly_CRMs
3R	17104259	3R_17104259_SNP [dm3] 3R_21278537_SNP [dm6]	G	T	1.182e^-6	0.003	UTR_3_PRIME SIFaR
2L	22057672	2L_22057672_INS [dm3] 2L_22057672_INS [dm6]	T	CTAGCC	1.184e^-6	0.003	INTERGENIC
3R	23515341	3R_23515341_SNP [dm3] 3R_27689619_SNP [dm6]	C	G	1.189e^-6	0.003	INTRON CG12880	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19665397	3L_19665397_SNP [dm3] 3L_19672297_SNP [dm6]	A	G	1.190e^-6	0.003	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13816701	3L_13816701_SNP [dm3] 3L_13823601_SNP [dm6]	G	C	1.197e^-6	0.003	INTERGENIC
X	11704092	X_11704092_SNP [dm3] X_11810059_SNP [dm6]	G	T	1.198e^-6	0.003	NON_SYNONYMOUS_CODING CG1578	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	11705641	X_11705641_SNP [dm3] X_11811608_SNP [dm6]	A	T	1.198e^-6	0.003	INTRON CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
X	11706935	X_11706935_SNP [dm3] X_11812902_SNP [dm6]	T	G	1.198e^-6	0.003	INTRON CG1578	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	4181210	2R_4181210_SNP [dm3] 2R_8293705_SNP [dm6]	A	C	1.201e^-6	0.003	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	19997391	3R_19997391_SNP [dm3] 3R_24171669_SNP [dm6]	A	C	1.208e^-6	0.003	UPSTREAM CG13606 INTERGENIC
3R	7382528	3R_7382528_SNP [dm3] 3R_11556806_SNP [dm6]	A	G	1.210e^-6	0.003	UPSTREAM CG10898 INTERGENIC
X	18196837	X_18196837_SNP [dm3] X_18302804_SNP [dm6]	G	A	1.221e^-6	0.003	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
X	21297288	X_21297288_SNP [dm3] X_21426261_SNP [dm6]	G	T	1.226e^-6	0.003	INTRON CG42343
2L	11933795	2L_11933795_DEL [dm3] 2L_11933795_DEL [dm6]	TTTTAGAGT	T	1.226e^-6	0.003	UPSTREAM Or33a INTERGENIC
2L	11933809	2L_11933809_MNP [dm3] 2L_11933809_MNP [dm6]	TGA	AAG	1.226e^-6	0.003	UPSTREAM Or33a INTERGENIC
3R	19530873	3R_19530873_SNP [dm3] 3R_23705151_SNP [dm6]	T	C	1.230e^-6	0.003	DOWNSTREAM CG31413 INTRON CG31414	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	13213233	2R_13213233_DEL [dm3] 2R_17325728_DEL [dm6]	GC	A	1.230e^-6	0.003	INTRON mbl
2R	13213406	2R_13213406_SNP [dm3] 2R_17325901_SNP [dm6]	C	T	1.230e^-6	0.003	INTRON mbl
3R	25921522	3R_25921522_SNP [dm3] 3R_30095800_SNP [dm6]	A	T	1.230e^-6	0.003	INTRON sima
3L	5844858	3L_5844858_SNP [dm3] 3L_5851758_SNP [dm6]	G	A	1.233e^-6	0.003	INTERGENIC
3R	15169468	3R_15169468_SNP [dm3] 3R_19343746_SNP [dm6]	T	G	1.233e^-6	0.003	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9791235	3L_9791235_SNP [dm3] 3L_9798135_SNP [dm6]	A	T	1.243e^-6	0.003	UPSTREAM Ilp1 & 2 others INTERGENIC
X	8803328	X_8803328_SNP [dm3] X_8909295_SNP [dm6]	T	G	1.259e^-6	0.003	INTRON rdgA
2R	8440174	2R_8440174_SNP [dm3] 2R_12552669_SNP [dm6]	T	C	1.260e^-6	0.003	INTRON fra
2R	9178834	2R_9178834_SNP [dm3] 2R_13291329_SNP [dm6]	T	C	1.260e^-6	0.003	INTRON Dh31-R	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3123493	3L_3123493_DEL [dm3] 3L_3123493_DEL [dm6]	GA	G	1.260e^-6	0.003	UPSTREAM prominin-like INTRON prominin-like
3R	4283522	3R_4283522_SNP [dm3] 3R_8457800_SNP [dm6]	G	A	1.260e^-6	0.003	INTRON CG45263
X	5225377	X_5225377_SNP [dm3] X_5331344_SNP [dm6]	A	T	1.263e^-6	0.003	SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_sens
3R	20218453	3R_20218453_SNP [dm3] 3R_24392731_SNP [dm6]	A	T	1.268e^-6	0.003	UPSTREAM CG13616 DOWNSTREAM CG13615 INTERGENIC	TF binding site mE1_TFBS_cad
2L	3698295	2L_3698295_SNP [dm3] 2L_3698295_SNP [dm6]	C	T	1.282e^-6	0.003	UPSTREAM CG3604 DOWNSTREAM CG10031 INTERGENIC
3L	12569371	3L_12569371_SNP [dm3] 3L_12576271_SNP [dm6]	A	C	1.290e^-6	0.003	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
3L	10852977	3L_10852977_SNP [dm3] 3L_10859877_SNP [dm6]	A	C	1.299e^-6	0.003	INTRON tna	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11933459	2L_11933459_SNP [dm3] 2L_11933459_SNP [dm6]	C	A	1.300e^-6	0.003	INTERGENIC
3R	5486969	3R_5486969_SNP [dm3] 3R_9661247_SNP [dm6]	T	G	1.302e^-6	0.003	INTRON CG9492
3L	22858413	3L_22858413_SNP [dm3] 3L_22865313_SNP [dm6]	T	A	1.304e^-6	0.003	UPSTREAM CG33170 DOWNSTREAM CG33169 INTRON CG33170	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16273974	2R_16273974_SNP [dm3] 2R_20386469_SNP [dm6]	T	A	1.308e^-6	0.003	INTERGENIC
2R	16273934	2R_16273934_SNP [dm3] 2R_20386429_SNP [dm6]	T	A	1.326e^-6	0.003	INTERGENIC
3R	27069334	3R_27069334_SNP [dm3] 3R_31243612_SNP [dm6]	T	C	1.336e^-6	0.003	INTRON qless
3L	15217285	3L_15217285_SNP [dm3] 3L_15224185_SNP [dm6]	A	G	1.350e^-6	0.003	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	2680086	3L_2680086_SNP [dm3] 3L_2680086_SNP [dm6]	T	A	1.352e^-6	0.003	INTRON Fife	TF binding site mE1_TFBS_chinmo
3L	2681750	3L_2681750_SNP [dm3] 3L_2681750_SNP [dm6]	C	T	1.352e^-6	0.003	INTRON Fife
X	11705517	X_11705517_SNP [dm3] X_11811484_SNP [dm6]	T	A	1.379e^-6	0.003	INTRON CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	6805610	3L_6805610_SNP [dm3] 3L_6812510_SNP [dm6]	C	T	1.382e^-6	0.003	INTERGENIC
3R	7520555	3R_7520555_SNP [dm3] 3R_11694833_SNP [dm6]	A	T	1.384e^-6	0.003	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	11819472	X_11819472_SNP [dm3] X_11925439_SNP [dm6]	C	T	1.388e^-6	0.003	UPSTREAM Sclp DOWNSTREAM CG10362 INTERGENIC
3L	20312583	3L_20312583_SNP [dm3] 3L_20319483_SNP [dm6]	G	A	1.404e^-6	0.003	NON_SYNONYMOUS_CODING Spn77Ba	TF binding site mE1_TFBS_HSA
3R	23879302	3R_23879302_SNP [dm3] 3R_28053580_SNP [dm6]	A	G	1.412e^-6	0.003	INTRON CG34362
X	8803275	X_8803275_SNP [dm3] X_8909242_SNP [dm6]	A	G	1.420e^-6	0.003	INTRON rdgA
X	19738959	X_19738959_SNP [dm3] X_19844926_SNP [dm6]	G	C	1.421e^-6	0.003	INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19738960	X_19738960_SNP [dm3] X_19844927_SNP [dm6]	T	G	1.421e^-6	0.003	INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17876921	X_17876921_SNP [dm3] X_17982888_SNP [dm6]	G	A	1.426e^-6	0.003	INTRON Sh
X	11705389	X_11705389_SNP [dm3] X_11811356_SNP [dm6]	G	A	1.430e^-6	0.003	INTRON CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	11706866	X_11706866_SNP [dm3] X_11812833_SNP [dm6]	T	G	1.430e^-6	0.003	INTRON CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
3L	10229648	3L_10229648_SNP [dm3] 3L_10236548_SNP [dm6]	G	T	1.451e^-6	0.003	UPSTREAM CR44542 INTERGENIC
3R	3554648	3R_3554648_SNP [dm3] 3R_7728926_SNP [dm6]	A	T	1.457e^-6	0.004	INTERGENIC
2R	4470492	2R_4470492_SNP [dm3] 2R_8582987_SNP [dm6]	C	T	1.462e^-6	0.004	INTRON CG42326
X	5019268	X_5019268_SNP [dm3] X_5125235_SNP [dm6]	T	C	1.471e^-6	0.004	INTRON rg & 1 other
X	11706869	X_11706869_SNP [dm3] X_11812836_SNP [dm6]	C	A	1.493e^-6	0.004	INTRON CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
2R	15856765	2R_15856765_SNP [dm3] 2R_19969260_SNP [dm6]	C	T	1.505e^-6	0.004	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	9427577	3R_9427577_SNP [dm3] 3R_13601855_SNP [dm6]	C	T	1.513e^-6	0.004	INTERGENIC
X	10925222	X_10925222_SNP [dm3] X_11031189_SNP [dm6]	T	A	1.523e^-6	0.004	INTRON CG42339
3R	26070389	3R_26070389_SNP [dm3] 3R_30244667_SNP [dm6]	G	A	1.526e^-6	0.004	SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26070407	3R_26070407_SNP [dm3] 3R_30244685_SNP [dm6]	C	A	1.526e^-6	0.004	SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26070415	3R_26070415_SNP [dm3] 3R_30244693_SNP [dm6]	C	A	1.526e^-6	0.004	NON_SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26070678	3R_26070678_SNP [dm3] 3R_30244956_SNP [dm6]	T	A	1.526e^-6	0.004	INTRON CG9733
3R	26071939	3R_26071939_SNP [dm3] 3R_30246217_SNP [dm6]	G	A	1.526e^-6	0.004	INTRON CG9733
3R	26071941	3R_26071941_SNP [dm3] 3R_30246219_SNP [dm6]	T	C	1.526e^-6	0.004	INTRON CG9733
3R	26071956	3R_26071956_SNP [dm3] 3R_30246234_SNP [dm6]	C	T	1.526e^-6	0.004	INTRON CG9733
X	13194093	X_13194093_SNP [dm3] X_13300060_SNP [dm6]	A	G	1.531e^-6	0.004	DOWNSTREAM CG1622 INTRON CG1764
3R	10169706	3R_10169706_SNP [dm3] 3R_14343984_SNP [dm6]	C	G	1.533e^-6	0.004	INTRON NK7.1
3L	19354139	3L_19354139_SNP [dm3] 3L_19361039_SNP [dm6]	C	T	1.543e^-6	0.004	INTRON CG32206
3L	5882279	3L_5882279_SNP [dm3] 3L_5889179_SNP [dm6]	T	A	1.543e^-6	0.004	INTERGENIC
X	8804100	X_8804100_INS [dm3] X_8910067_INS [dm6]	A	AC	1.547e^-6	0.004	INTRON rdgA
2R	3230464	2R_3230464_SNP [dm3] 2R_7342959_SNP [dm6]	G	A	1.548e^-6	0.004	SPLICE_SITE_REGION Dscam1 UPSTREAM CR44071 INTRON Dscam1	TF binding site mE1_TFBS_chinmo
3L	22855146	3L_22855146_SNP [dm3] 3L_22862046_SNP [dm6]	A	G	1.559e^-6	0.004	DOWNSTREAM CG13239 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	22855291	3L_22855291_SNP [dm3] 3L_22862191_SNP [dm6]	G	C	1.559e^-6	0.004	DOWNSTREAM CG13239 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	22076556	3R_22076556_SNP [dm3] 3R_26250834_SNP [dm6]	C	T	1.573e^-6	0.004	INTRON CR42745
3L	5238072	3L_5238072_SNP [dm3] 3L_5244972_SNP [dm6]	G	A	1.575e^-6	0.004	INTRON shep
X	16539637	X_16539637_SNP [dm3] X_16645604_SNP [dm6]	C	T	1.577e^-6	0.004	INTRON mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9724300	3R_9724300_SNP [dm3] 3R_13898578_SNP [dm6]	C	G	1.579e^-6	0.004	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	16150252	2R_16150252_SNP [dm3] 2R_20262747_SNP [dm6]	A	T	1.601e^-6	0.004	UTR_5_PRIME PCNA DOWNSTREAM plu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	9700179	3R_9700179_SNP [dm3] 3R_13874457_SNP [dm6]	A	T	1.603e^-6	0.004	INTRON E5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8784837	2R_8784837_SNP [dm3] 2R_12897332_SNP [dm6]	G	A	1.604e^-6	0.004	INTRON vg
3L	22752911	3L_22752911_INS [dm3] 3L_22759811_INS [dm6]	G	GTCTCTGTCT	1.615e^-6	0.004	UPSTREAM SPoCk INTRON SPoCk
2R	4199798	2R_4199798_SNP [dm3] 2R_8312293_SNP [dm6]	T	A	1.619e^-6	0.004	DOWNSTREAM CR44450 INTERGENIC
X	18196194	X_18196194_SNP [dm3] X_18302161_SNP [dm6]	C	T	1.623e^-6	0.004	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	26236311	3R_26236311_SNP [dm3] 3R_30410589_SNP [dm6]	C	T	1.624e^-6	0.004	INTERGENIC
X	11705112	X_11705112_SNP [dm3] X_11811079_SNP [dm6]	C	T	1.642e^-6	0.004	SYNONYMOUS_CODING CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11468550	3L_11468550_SNP [dm3] 3L_11475450_SNP [dm6]	C	A	1.645e^-6	0.004	SYNONYMOUS_CODING Vha16-2
3R	20452608	3R_20452608_SNP [dm3] 3R_24626886_SNP [dm6]	T	G	1.653e^-6	0.004	DOWNSTREAM Wsck INTRON atl
3L	6573545	3L_6573545_SNP [dm3] 3L_6580445_SNP [dm6]	G	C	1.658e^-6	0.004	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19997556	3R_19997556_DEL [dm3] 3R_24171834_DEL [dm6]	TGTAT	T	1.660e^-6	0.004	UPSTREAM CG13606 INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	16273977	2R_16273977_SNP [dm3] 2R_20386472_SNP [dm6]	A	G	1.664e^-6	0.004	INTERGENIC
2R	17499913	2R_17499913_SNP [dm3] 2R_21612408_SNP [dm6]	A	C	1.665e^-6	0.004	INTRON CG15673
3L	7385075	3L_7385075_SNP [dm3] 3L_7391975_SNP [dm6]	A	T	1.666e^-6	0.004	INTRON CG8563
3R	6229779	3R_6229779_SNP [dm3] 3R_10404057_SNP [dm6]	A	G	1.680e^-6	0.004	NON_SYNONYMOUS_CODING CG6325	TF binding site mE1_TFBS_cad
3R	26487676	3R_26487676_DEL [dm3] 3R_30661954_DEL [dm6]	AA	A	1.683e^-6	0.004	INTERGENIC
3R	26487682	3R_26487682_SNP [dm3] 3R_30661960_SNP [dm6]	G	T	1.683e^-6	0.004	INTERGENIC
X	17081368	X_17081368_SNP [dm3] X_17187335_SNP [dm6]	T	A	1.689e^-6	0.004	INTRON baz
2R	4223432	2R_4223432_SNP [dm3] 2R_8335927_SNP [dm6]	A	T	1.699e^-6	0.004	INTRON pdm3
2R	8412930	2R_8412930_SNP [dm3] 2R_12525425_SNP [dm6]	C	T	1.706e^-6	0.004	INTERGENIC
3L	15163134	3L_15163134_SNP [dm3] 3L_15170034_SNP [dm6]	C	T	1.707e^-6	0.004	INTERGENIC
3R	23714322	3R_23714322_SNP [dm3] 3R_27888600_SNP [dm6]	A	T	1.708e^-6	0.004	INTRON CG34353
3R	23296091	3R_23296091_SNP [dm3] 3R_27470369_SNP [dm6]	T	A	1.711e^-6	0.004	INTERGENIC
2R	8936461	2R_8936461_SNP [dm3] 2R_13048956_SNP [dm6]	A	T	1.719e^-6	0.004	DOWNSTREAM CG13324 INTERGENIC
2L	7894943	2L_7894943_SNP [dm3] 2L_7894943_SNP [dm6]	G	A	1.722e^-6	0.004	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8803288	X_8803288_SNP [dm3] X_8909255_SNP [dm6]	A	C	1.747e^-6	0.004	INTRON rdgA
2L	8194117	2L_8194117_SNP [dm3] 2L_8194117_SNP [dm6]	T	A	1.748e^-6	0.004	UTR_3_PRIME CG8475 UPSTREAM CR44116 INTRON CG8475
3R	22590083	3R_22590083_SNP [dm3] 3R_26764361_SNP [dm6]	T	C	1.750e^-6	0.004	INTERGENIC
2L	11933940	2L_11933940_SNP [dm3] 2L_11933940_SNP [dm6]	T	C	1.750e^-6	0.004	UPSTREAM Or33a INTERGENIC
2R	14371096	2R_14371096_SNP [dm3] 2R_18483591_SNP [dm6]	T	C	1.755e^-6	0.004	INTRON CG30116
2L	11934280	2L_11934280_SNP [dm3] 2L_11934280_SNP [dm6]	G	T	1.756e^-6	0.004	UPSTREAM Or33a INTERGENIC
2R	8414963	2R_8414963_SNP [dm3] 2R_12527458_SNP [dm6]	T	C	1.762e^-6	0.004	INTERGENIC
2R	16072736	2R_16072736_SNP [dm3] 2R_20185231_SNP [dm6]	A	T	1.765e^-6	0.004	INTERGENIC
2L	10375506	2L_10375506_SNP [dm3] 2L_10375506_SNP [dm6]	A	G	1.766e^-6	0.004	SYNONYMOUS_CODING CG33303 UPSTREAM dpr19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4074892	3R_4074892_SNP [dm3] 3R_8249170_SNP [dm6]	C	A	1.776e^-6	0.004	SYNONYMOUS_CODING CG15864
X	11706875	X_11706875_SNP [dm3] X_11812842_SNP [dm6]	G	T	1.785e^-6	0.004	INTRON CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
3L	2680162	3L_2680162_SNP [dm3] 3L_2680162_SNP [dm6]	A	G	1.786e^-6	0.004	INTRON Fife	TF binding site mE1_TFBS_chinmo
2R	17739988	2R_17739988_SNP [dm3] 2R_21852483_SNP [dm6]	A	C	1.789e^-6	0.004	INTERGENIC	TF binding site mE1_TFBS_cad
3L	7088884	3L_7088884_INS [dm3] 3L_7095784_INS [dm6]	T	TAAATATAT	1.795e^-6	0.004	INTRON form3	TF binding site BDTNP1_TFBS_da
X	8803281	X_8803281_SNP [dm3] X_8909248_SNP [dm6]	A	G	1.807e^-6	0.004	INTRON rdgA
3L	7088751	3L_7088751_SNP [dm3] 3L_7095651_SNP [dm6]	G	T	1.817e^-6	0.004	INTRON form3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	18685457	3R_18685457_SNP [dm3] 3R_22859735_SNP [dm6]	T	C	1.817e^-6	0.004	INTERGENIC
3L	5881084	3L_5881084_SNP [dm3] 3L_5887984_SNP [dm6]	G	C	1.827e^-6	0.004	INTERGENIC
3L	5882278	3L_5882278_SNP [dm3] 3L_5889178_SNP [dm6]	A	T	1.827e^-6	0.004	INTERGENIC
3R	9772878	3R_9772878_SNP [dm3] 3R_13947156_SNP [dm6]	A	C	1.857e^-6	0.004	INTERGENIC
2L	5152085	2L_5152085_DEL [dm3] 2L_5152085_DEL [dm6]	CAGCAAC	C	1.861e^-6	0.004	UTR_5_PRIME Msp300 INTRON Msp300	TF binding site mE1_TFBS_inv
3R	14054537	3R_14054537_SNP [dm3] 3R_18228815_SNP [dm6]	T	C	1.874e^-6	0.004	DOWNSTREAM Mdh2 INTERGENIC
2L	4499671	2L_4499671_SNP [dm3] 2L_4499671_SNP [dm6]	A	G	1.878e^-6	0.004	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	18597730	X_18597730_SNP [dm3] X_18703697_SNP [dm6]	A	T	1.880e^-6	0.004	INTERGENIC
X	18597731	X_18597731_SNP [dm3] X_18703698_SNP [dm6]	T	A	1.880e^-6	0.004	INTERGENIC
3L	4964999	3L_4964999_SNP [dm3] 3L_4964999_SNP [dm6]	C	T	1.894e^-6	0.004	INTRON Con
3L	22855081	3L_22855081_SNP [dm3] 3L_22861981_SNP [dm6]	G	T	1.908e^-6	0.004	DOWNSTREAM CG13239 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	20447475	3R_20447475_SNP [dm3] 3R_24621753_SNP [dm6]	A	G	1.911e^-6	0.004	INTRON mld
2R	14262132	2R_14262132_SNP [dm3] 2R_18374627_SNP [dm6]	G	T	1.922e^-6	0.004	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14298997	2R_14298997_SNP [dm3] 2R_18411492_SNP [dm6]	T	A	1.933e^-6	0.004	UTR_5_PRIME imd UPSTREAM Dp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	20586267	2R_20586267_SNP [dm3] 2R_24698744_SNP [dm6]	A	T	1.937e^-6	0.004	UTR_3_PRIME Mid1 DOWNSTREAM Mid1
3L	9160316	3L_9160316_SNP [dm3] 3L_9167216_SNP [dm6]	A	G	1.953e^-6	0.004	INTRON Rdl
X	19738940	X_19738940_SNP [dm3] X_19844907_SNP [dm6]	T	A	1.961e^-6	0.004	INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19890339	X_19890339_SNP [dm3] X_19996306_SNP [dm6]	G	A	1.964e^-6	0.004	INTERGENIC
2L	11933852	2L_11933852_SNP [dm3] 2L_11933852_SNP [dm6]	G	T	1.997e^-6	0.004	UPSTREAM Or33a INTERGENIC
3L	735923	3L_735923_SNP [dm3] 3L_735923_SNP [dm6]	T	G	1.999e^-6	0.004	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	20441106	X_20441106_SNP [dm3] X_20570079_SNP [dm6]	A	C	2.009e^-6	0.004	INTERGENIC
3L	22861312	3L_22861312_SNP [dm3] 3L_22868212_SNP [dm6]	T	C	2.048e^-6	0.004	UTR_5_PRIME CG11137 DOWNSTREAM Arf79F & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	5209291	2L_5209291_SNP [dm3] 2L_5209291_SNP [dm6]	C	T	2.065e^-6	0.004	UTR_3_PRIME Cyp28d2
3L	17607652	3L_17607652_SNP [dm3] 3L_17614552_SNP [dm6]	G	A	2.087e^-6	0.004	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	994042	X_994042_SNP [dm3] X_1100009_SNP [dm6]	G	T	2.089e^-6	0.004	INTRON CG3655	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15147363	3L_15147363_SNP [dm3] 3L_15154263_SNP [dm6]	G	A	2.098e^-6	0.004	UTR_3_PRIME FucTA & 1 other
3L	16655338	3L_16655338_SNP [dm3] 3L_16662238_SNP [dm6]	G	A	2.098e^-6	0.004	UPSTREAM Baldspot DOWNSTREAM Galphaf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	16073650	2R_16073650_SNP [dm3] 2R_20186145_SNP [dm6]	T	C	2.100e^-6	0.004	INTERGENIC
3R	13529871	3R_13529871_SNP [dm3] 3R_17704149_SNP [dm6]	C	G	2.100e^-6	0.004	INTRON osa	TF binding site BDTNP1_TFBS_z
3R	23723542	3R_23723542_SNP [dm3] 3R_27897820_SNP [dm6]	A	G	2.141e^-6	0.005	INTRON CG34353
2L	11933974	2L_11933974_SNP [dm3] 2L_11933974_SNP [dm6]	A	T	2.166e^-6	0.005	UPSTREAM Or33a INTERGENIC
3L	13573518	3L_13573518_SNP [dm3] 3L_13580418_SNP [dm6]	A	T	2.177e^-6	0.005	INTRON bru-3
3R	6046662	3R_6046662_SNP [dm3] 3R_10220940_SNP [dm6]	A	G	2.181e^-6	0.005	UTR_3_PRIME Syn
3R	7511546	3R_7511546_SNP [dm3] 3R_11685824_SNP [dm6]	T	C	2.181e^-6	0.005	NON_SYNONYMOUS_CODING CG6834	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16136851	3R_16136851_SNP [dm3] 3R_20311129_SNP [dm6]	C	A	2.199e^-6	0.005	INTRON CG42668	TF binding site mE1_TFBS_sbb
3R	26069915	3R_26069915_SNP [dm3] 3R_30244193_SNP [dm6]	G	A	2.220e^-6	0.005	SYNONYMOUS_CODING CG9733 UPSTREAM CG9737
3R	14027134	3R_14027134_SNP [dm3] 3R_18201412_SNP [dm6]	T	A	2.239e^-6	0.005	INTRON CG7985
X	14779407	X_14779407_SNP [dm3] X_14885374_SNP [dm6]	A	G	2.245e^-6	0.005	DOWNSTREAM CG9514 INTRON Flo2
3L	19451914	3L_19451914_SNP [dm3] 3L_19458814_SNP [dm6]	T	A	2.257e^-6	0.005	INTERGENIC
2R	7388089	2R_7388089_SNP [dm3] 2R_11500584_SNP [dm6]	G	A	2.267e^-6	0.005	INTRON inv
X	14778559	X_14778559_SNP [dm3] X_14884526_SNP [dm6]	T	C	2.275e^-6	0.005	INTRON Flo2
X	14778597	X_14778597_SNP [dm3] X_14884564_SNP [dm6]	G	C	2.275e^-6	0.005	INTRON Flo2
2R	16587489	2R_16587489_SNP [dm3] 2R_20699984_SNP [dm6]	A	G	2.283e^-6	0.005	INTRON dpr
3L	12037514	3L_12037514_SNP [dm3] 3L_12044414_SNP [dm6]	T	C	2.291e^-6	0.005	UPSTREAM CG43638 DOWNSTREAM CG6793 INTRON rols
3R	25802741	3R_25802741_SNP [dm3] 3R_29977019_SNP [dm6]	G	A	2.305e^-6	0.005	INTERGENIC
3R	25030053	3R_25030053_SNP [dm3] 3R_29204331_SNP [dm6]	T	A	2.325e^-6	0.005	UPSTREAM CG14508 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	5301332	2R_5301332_SNP [dm3] 2R_9413827_SNP [dm6]	G	T	2.335e^-6	0.005	UPSTREAM wun2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5652853	2R_5652853_SNP [dm3] 2R_9765348_SNP [dm6]	T	C	2.347e^-6	0.005	NON_SYNONYMOUS_CODING trpl UPSTREAM CR44205	TF binding site mE1_TFBS_inv
2R	16609194	2R_16609194_SNP [dm3] 2R_20721689_SNP [dm6]	A	T	2.352e^-6	0.005	UPSTREAM CR44660 INTRON dpr
X	17875658	X_17875658_SNP [dm3] X_17981625_SNP [dm6]	T	G	2.353e^-6	0.005	INTRON Sh
2R	11689729	2R_11689729_SNP [dm3] 2R_15802224_SNP [dm6]	T	C	2.354e^-6	0.005	INTRON Zasp52 & 1 other
3R	26138439	3R_26138439_SNP [dm3] 3R_30312717_SNP [dm6]	G	A	2.361e^-6	0.005	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	14262204	2R_14262204_SNP [dm3] 2R_18374699_SNP [dm6]	A	G	2.376e^-6	0.005	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6877633	3R_6877633_SNP [dm3] 3R_11051911_SNP [dm6]	C	T	2.397e^-6	0.005	INTERGENIC
X	18608638	X_18608638_SNP [dm3] X_18714605_SNP [dm6]	T	A	2.399e^-6	0.005	INTRON CCKLR-17D1
2R	3192174	2R_3192174_SNP [dm3] 2R_7304669_SNP [dm6]	G	A	2.401e^-6	0.005	INTERGENIC
3L	5882212	3L_5882212_SNP [dm3] 3L_5889112_SNP [dm6]	G	C	2.409e^-6	0.005	INTERGENIC
2R	7420355	2R_7420355_DEL [dm3] 2R_11532850_DEL [dm6]	ATCGAGA	A	2.413e^-6	0.005	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3170682	3R_3170682_SNP [dm3] 3R_7344960_SNP [dm6]	A	G	2.420e^-6	0.005	UPSTREAM CG31496 INTERGENIC
X	6130995	X_6130995_SNP [dm3] X_6236962_SNP [dm6]	T	A	2.436e^-6	0.005	UPSTREAM CG14445 DOWNSTREAM CG14446 INTERGENIC
2R	3229325	2R_3229325_SNP [dm3] 2R_7341820_SNP [dm6]	G	A	2.485e^-6	0.005	SYNONYMOUS_CODING Dscam1 INTRON Dscam1	TF binding site mE1_TFBS_HSA
2R	13787683	2R_13787683_SNP [dm3] 2R_17900178_SNP [dm6]	G	T	2.489e^-6	0.005	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10233932	3L_10233932_SNP [dm3] 3L_10240832_SNP [dm6]	C	G	2.501e^-6	0.005	DOWNSTREAM CR45403 INTERGENIC
3L	20217140	3L_20217140_SNP [dm3] 3L_20224040_SNP [dm6]	T	C	2.516e^-6	0.005	DOWNSTREAM CG17145 INTRON CG17147
3R	18460867	3R_18460867_SNP [dm3] 3R_22635145_SNP [dm6]	C	T	2.522e^-6	0.005	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	11934046	3R_11934046_SNP [dm3] 3R_16108324_SNP [dm6]	A	C	2.536e^-6	0.005	INTERGENIC
3R	11934084	3R_11934084_SNP [dm3] 3R_16108362_SNP [dm6]	A	T	2.536e^-6	0.005	INTERGENIC
3R	11934302	3R_11934302_SNP [dm3] 3R_16108580_SNP [dm6]	A	G	2.536e^-6	0.005	INTERGENIC
3R	11934329	3R_11934329_SNP [dm3] 3R_16108607_SNP [dm6]	C	T	2.536e^-6	0.005	INTERGENIC
3R	11934341	3R_11934341_SNP [dm3] 3R_16108619_SNP [dm6]	C	A	2.536e^-6	0.005	INTERGENIC
3R	11935308	3R_11935308_INS [dm3] 3R_16109586_INS [dm6]	GG	CATCTATGCC	2.536e^-6	0.005	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11935321	3R_11935321_SNP [dm3] 3R_16109599_SNP [dm6]	G	A	2.536e^-6	0.005	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13882346	3L_13882346_SNP [dm3] 3L_13889246_SNP [dm6]	G	A	2.542e^-6	0.005	INTRON dysc
2R	14708959	2R_14708959_SNP [dm3] 2R_18821454_SNP [dm6]	C	T	2.544e^-6	0.005	UTR_3_PRIME Phb2 DOWNSTREAM CG15097 INTRON Phb2	TF binding site mE1_TFBS_cad
X	20535806	X_20535806_SNP [dm3] X_20664779_SNP [dm6]	C	T	2.544e^-6	0.005	INTRON CG1835	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26070102	3R_26070102_SNP [dm3] 3R_30244380_SNP [dm6]	A	G	2.552e^-6	0.005	NON_SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo
2R	16958702	2R_16958702_SNP [dm3] 2R_21071197_SNP [dm6]	G	T	2.563e^-6	0.005	INTRON CG10527 EXON CR44704	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3571036	3R_3571036_SNP [dm3] 3R_7745314_SNP [dm6]	C	G	2.576e^-6	0.005	INTERGENIC
3R	3577382	3R_3577382_SNP [dm3] 3R_7751660_SNP [dm6]	C	G	2.576e^-6	0.005	INTERGENIC
3R	3592765	3R_3592765_SNP [dm3] 3R_7767043_SNP [dm6]	G	A	2.576e^-6	0.005	INTERGENIC
3R	3617311	3R_3617311_SNP [dm3] 3R_7791589_SNP [dm6]	G	A	2.576e^-6	0.005	INTRON CG10086	TF binding site mE1_TFBS_cad
3R	3617347	3R_3617347_SNP [dm3] 3R_7791625_SNP [dm6]	T	G	2.576e^-6	0.005	INTRON CG10086	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3618931	3R_3618931_SNP [dm3] 3R_7793209_SNP [dm6]	G	A	2.576e^-6	0.005	UTR_3_PRIME CG10086 UPSTREAM CG2641
X	18885484	X_18885484_SNP [dm3] X_18991451_SNP [dm6]	C	A	2.578e^-6	0.005	INTRON CG43759
3R	11109371	3R_11109371_SNP [dm3] 3R_15283649_SNP [dm6]	A	C	2.592e^-6	0.005	INTRON Tm1
2R	8514390	2R_8514390_SNP [dm3] 2R_12626885_SNP [dm6]	A	T	2.598e^-6	0.005	NON_SYNONYMOUS_CODING CG17760
3R	9743913	3R_9743913_SNP [dm3] 3R_13918191_SNP [dm6]	T	G	2.598e^-6	0.005	INTERGENIC
3R	3156135	3R_3156135_SNP [dm3] 3R_7330413_SNP [dm6]	A	G	2.605e^-6	0.005	INTERGENIC
3L	5237909	3L_5237909_SNP [dm3] 3L_5244809_SNP [dm6]	G	T	2.617e^-6	0.005	INTRON shep
X	18603170	X_18603170_SNP [dm3] X_18709137_SNP [dm6]	A	C	2.617e^-6	0.005	UPSTREAM Cyp308a1 INTRON CCKLR-17D1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18608086	X_18608086_INS [dm3] X_18714053_INS [dm6]	T	TTTGTGTAAGTACAC...	2.617e^-6	0.005	INTRON CCKLR-17D1
2L	6588649	2L_6588649_SNP [dm3] 2L_6588649_SNP [dm6]	G	A	2.688e^-6	0.005	INTRON CG11319
2R	18940698	2R_18940698_SNP [dm3] 2R_23053175_SNP [dm6]	T	A	2.695e^-6	0.005	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	20586215	2R_20586215_SNP [dm3] 2R_24698692_SNP [dm6]	C	T	2.706e^-6	0.005	UTR_3_PRIME Mid1 DOWNSTREAM Mid1
2R	5301189	2R_5301189_SNP [dm3] 2R_9413684_SNP [dm6]	A	T	2.712e^-6	0.005	UPSTREAM wun2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5302622	2R_5302622_SNP [dm3] 2R_9415117_SNP [dm6]	G	A	2.712e^-6	0.005	SYNONYMOUS_CODING wun2 UTR_5_PRIME wun2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	356524	3R_356524_INS [dm3] 3R_4530802_INS [dm6]	T	TT	2.729e^-6	0.005	INTRON CG34357
3L	12584264	3L_12584264_SNP [dm3] 3L_12591164_SNP [dm6]	G	A	2.729e^-6	0.005	INTRON ara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14710863	3L_14710863_SNP [dm3] 3L_14717763_SNP [dm6]	T	C	2.732e^-6	0.005	INTRON ome
X	11707224	X_11707224_SNP [dm3] X_11813191_SNP [dm6]	T	C	2.734e^-6	0.005	INTRON CG1578	TF binding site mE1_TFBS_inv
3L	1800694	3L_1800694_SNP [dm3] 3L_1800694_SNP [dm6]	A	T	2.757e^-6	0.005	NON_SYNONYMOUS_CODING Patj	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4735440	3L_4735440_SNP [dm3] 3L_4735440_SNP [dm6]	C	A	2.762e^-6	0.005	INTRON RhoGEF64C
2L	15903533	2L_15903533_SNP [dm3] 2L_15903533_SNP [dm6]	G	C	2.763e^-6	0.005	INTERGENIC
X	11309531	X_11309531_SNP [dm3] X_11415498_SNP [dm6]	C	G	2.771e^-6	0.005	SYNONYMOUS_CODING Gr10a DOWNSTREAM Or10a	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16587462	2R_16587462_SNP [dm3] 2R_20699957_SNP [dm6]	T	G	2.783e^-6	0.005	INTRON dpr
2R	16587481	2R_16587481_SNP [dm3] 2R_20699976_SNP [dm6]	T	A	2.783e^-6	0.005	INTRON dpr
2R	3465546	2R_3465546_SNP [dm3] 2R_7578041_SNP [dm6]	C	T	2.821e^-6	0.006	SYNONYMOUS_CODING Vps13 DOWNSTREAM CR45130
X	15538435	X_15538435_SNP [dm3] X_15644402_SNP [dm6]	G	A	2.842e^-6	0.006	NON_SYNONYMOUS_CODING CG8117	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	19708137	X_19708137_SNP [dm3] X_19814104_SNP [dm6]	C	T	2.843e^-6	0.006	DOWNSTREAM skpD INTERGENIC
3R	26233621	3R_26233621_SNP [dm3] 3R_30407899_SNP [dm6]	C	T	2.851e^-6	0.006	INTERGENIC
3R	27201619	3R_27201619_SNP [dm3] 3R_31375897_SNP [dm6]	G	A	2.853e^-6	0.006	INTERGENIC
X	19742004	X_19742004_SNP [dm3] X_19847971_SNP [dm6]	G	A	2.879e^-6	0.006	INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	22430444	3L_22430444_SNP [dm3] 3L_22437344_SNP [dm6]	C	A	2.884e^-6	0.006	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21649723	3R_21649723_SNP [dm3] 3R_25824001_SNP [dm6]	G	C	2.903e^-6	0.006	EXON CR44949
2L	10049363	2L_10049363_SNP [dm3] 2L_10049363_SNP [dm6]	C	T	2.920e^-6	0.006	UPSTREAM CG33301 INTERGENIC
X	21931691	X_21931691_SNP [dm3] X_22529855_SNP [dm6]	G	T	2.931e^-6	0.006	UPSTREAM S6kII INTRON CG17600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	4423585	3R_4423585_DEL [dm3] 3R_8597863_DEL [dm6]	GG	G	2.951e^-6	0.006	INTRON 5-HT2B
X	14873087	X_14873087_SNP [dm3] X_14979054_SNP [dm6]	A	G	2.967e^-6	0.006	INTRON eag
3L	14706669	3L_14706669_SNP [dm3] 3L_14713569_SNP [dm6]	C	T	2.969e^-6	0.006	INTRON ome
2R	14262217	2R_14262217_SNP [dm3] 2R_18374712_SNP [dm6]	G	T	2.978e^-6	0.006	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10507503	2R_10507503_SNP [dm3] 2R_14619998_SNP [dm6]	G	A	3.018e^-6	0.006	SYNONYMOUS_CODING CG12863 DOWNSTREAM Sec61beta	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3167185	3R_3167185_SNP [dm3] 3R_7341463_SNP [dm6]	A	G	3.019e^-6	0.006	INTERGENIC
3R	26482461	3R_26482461_SNP [dm3] 3R_30656739_SNP [dm6]	T	C	3.024e^-6	0.006	INTERGENIC
3R	13461897	3R_13461897_SNP [dm3] 3R_17636175_SNP [dm6]	C	A	3.038e^-6	0.006	INTRON CG43175
X	21966608	X_21966608_SNP [dm3] X_22564772_SNP [dm6]	A	G	3.039e^-6	0.006	INTERGENIC
3R	11935161	3R_11935161_SNP [dm3] 3R_16109439_SNP [dm6]	G	A	3.042e^-6	0.006	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16073538	2R_16073538_SNP [dm3] 2R_20186033_SNP [dm6]	C	G	3.049e^-6	0.006	INTERGENIC
2R	16848641	2R_16848641_SNP [dm3] 2R_20961136_SNP [dm6]	A	G	3.057e^-6	0.006	UPSTREAM hbn INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	4727315	2R_4727315_SNP [dm3] 2R_8839810_SNP [dm6]	G	C	3.058e^-6	0.006	INTRON sns
3R	15820346	3R_15820346_SNP [dm3] 3R_19994624_SNP [dm6]	A	C	3.060e^-6	0.006	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3R	4559793	3R_4559793_SNP [dm3] 3R_8734071_SNP [dm6]	A	G	3.090e^-6	0.006	SYNONYMOUS_CODING CG8202
X	19351431	X_19351431_SNP [dm3] X_19457398_SNP [dm6]	G	A	3.092e^-6	0.006	INTRON kek5
3R	11104227	3R_11104227_SNP [dm3] 3R_15278505_SNP [dm6]	G	A	3.105e^-6	0.006	SPLICE_SITE_REGION l_3_neo43 SYNONYMOUS_CODING l_3_neo43 UPSTREAM MRG15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11106913	3R_11106913_SNP [dm3] 3R_15281191_SNP [dm6]	A	C	3.105e^-6	0.006	UPSTREAM Tm1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	11106929	3R_11106929_SNP [dm3] 3R_15281207_SNP [dm6]	G	A	3.105e^-6	0.006	UPSTREAM Tm1 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	11106930	3R_11106930_SNP [dm3] 3R_15281208_SNP [dm6]	T	A	3.105e^-6	0.006	UPSTREAM Tm1 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	16814754	3L_16814754_SNP [dm3] 3L_16821654_SNP [dm6]	T	A	3.108e^-6	0.006	INTRON CG13024
X	13181927	X_13181927_SNP [dm3] X_13287894_SNP [dm6]	T	C	3.109e^-6	0.006	UPSTREAM CG15744 DOWNSTREAM CG15743 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	7087899	3L_7087899_SNP [dm3] 3L_7094799_SNP [dm6]	C	A	3.165e^-6	0.006	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18597721	X_18597721_SNP [dm3] X_18703688_SNP [dm6]	T	A	3.174e^-6	0.006	INTERGENIC
X	16539995	X_16539995_INS [dm3] X_16645962_INS [dm6]	A	AACTGCA	3.193e^-6	0.006	INTRON mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5974113	3L_5974113_SNP [dm3] 3L_5981013_SNP [dm6]	G	A	3.193e^-6	0.006	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	7507782	3R_7507782_SNP [dm3] 3R_11682060_SNP [dm6]	C	T	3.196e^-6	0.006	SYNONYMOUS_CODING CG6830
2R	17781611	2R_17781611_DEL [dm3] 2R_21894106_DEL [dm6]	CA	C	3.199e^-6	0.006	INTRON Fili
3R	18685806	3R_18685806_SNP [dm3] 3R_22860084_SNP [dm6]	G	T	3.204e^-6	0.006	INTERGENIC
3R	18685810	3R_18685810_SNP [dm3] 3R_22860088_SNP [dm6]	A	G	3.204e^-6	0.006	INTERGENIC
3R	18685816	3R_18685816_SNP [dm3] 3R_22860094_SNP [dm6]	C	G	3.204e^-6	0.006	INTERGENIC
3R	18685827	3R_18685827_SNP [dm3] 3R_22860105_SNP [dm6]	C	G	3.204e^-6	0.006	INTERGENIC
3R	18685828	3R_18685828_SNP [dm3] 3R_22860106_SNP [dm6]	C	G	3.204e^-6	0.006	INTERGENIC
3R	18685833	3R_18685833_SNP [dm3] 3R_22860111_SNP [dm6]	G	T	3.204e^-6	0.006	INTERGENIC
3R	18685835	3R_18685835_SNP [dm3] 3R_22860113_SNP [dm6]	G	A	3.204e^-6	0.006	INTERGENIC
3R	18685838	3R_18685838_SNP [dm3] 3R_22860116_SNP [dm6]	C	A	3.204e^-6	0.006	INTERGENIC
3R	18685842	3R_18685842_SNP [dm3] 3R_22860120_SNP [dm6]	C	T	3.204e^-6	0.006	INTERGENIC
3R	18685865	3R_18685865_DEL [dm3] 3R_22860143_DEL [dm6]	TTG	CC	3.204e^-6	0.006	INTERGENIC
3R	18685875	3R_18685875_SNP [dm3] 3R_22860153_SNP [dm6]	G	A	3.204e^-6	0.006	INTERGENIC
3L	21472492	3L_21472492_INS [dm3] 3L_21479392_INS [dm6]	C	CATCCAAAGTAGTCAGCAGT...	3.213e^-6	0.006	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
X	11096273	X_11096273_SNP [dm3] X_11202240_SNP [dm6]	A	G	3.225e^-6	0.006	UPSTREAM CG11106 INTERGENIC
3L	12569575	3L_12569575_DEL [dm3] 3L_12576475_DEL [dm6]	AA	A	3.236e^-6	0.006	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
3L	18017319	3L_18017319_SNP [dm3] 3L_18024219_SNP [dm6]	T	C	3.237e^-6	0.006	INTRON Eip75B

By genomic position
Variant impact
Gene name

Microbiota_OTU015 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results