DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.645e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.0059940
In_3R_Mo	0.0689944

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	5.801	0.055

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1931 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	18076321	3L_18076321_SNP [dm3] 3L_18083221_SNP [dm6]	G	A	6.460e^-7	0.512	INTRON CR43253	TF binding site mE1_TFBS_inv
2L	8371319	2L_8371319_INS [dm3] 2L_8371319_INS [dm6]	A	ATCTA	7.881e^-7	0.512	UPSTREAM CR45341 INTRON CG17292
2L	2025251	2L_2025251_SNP [dm3] 2L_2025251_SNP [dm6]	G	A	1.205e^-6	0.512	INTRON CG4238
X	13768849	X_13768849_SNP [dm3] X_13874816_SNP [dm6]	T	A	1.535e^-6	0.512	INTRON mamo
3L	10157038	3L_10157038_SNP [dm3] 3L_10163938_SNP [dm6]	T	C	1.543e^-6	0.512	INTRON dpr10
3L	9965563	3L_9965563_SNP [dm3] 3L_9972463_SNP [dm6]	G	T	1.705e^-6	0.512	UPSTREAM vnc & 2 others INTRON vnc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14475365	2R_14475365_SNP [dm3] 2R_18587860_SNP [dm6]	A	T	2.026e^-6	0.512	INTRON GEFmeso
3L	12306884	3L_12306884_SNP [dm3] 3L_12313784_SNP [dm6]	C	T	2.491e^-6	0.512	INTERGENIC
2R	11472329	2R_11472329_SNP [dm3] 2R_15584824_SNP [dm6]	T	A	2.519e^-6	0.512	INTERGENIC
X	10989728	X_10989728_SNP [dm3] X_11095695_SNP [dm6]	T	C	3.542e^-6	0.512	UPSTREAM CR45604 & 1 other DOWNSTREAM CG2061 INTERGENIC
2R	13383094	2R_13383094_SNP [dm3] 2R_17495589_SNP [dm6]	C	T	4.495e^-6	0.512	SYNONYMOUS_CODING CG30103	TF binding site mE1_TFBS_cad
3R	25378986	3R_25378986_SNP [dm3] 3R_29553264_SNP [dm6]	G	A	4.625e^-6	0.512	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	14475362	2R_14475362_INS [dm3] 2R_18587857_INS [dm6]	T	TA	4.630e^-6	0.512	INTRON GEFmeso
2R	14475380	2R_14475380_SNP [dm3] 2R_18587875_SNP [dm6]	A	T	4.674e^-6	0.512	INTRON GEFmeso
2R	14475381	2R_14475381_SNP [dm3] 2R_18587876_SNP [dm6]	G	T	4.674e^-6	0.512	INTRON GEFmeso
2R	14475386	2R_14475386_DEL [dm3] 2R_18587881_DEL [dm6]	AG	A	4.674e^-6	0.512	INTRON GEFmeso
2L	14082661	2L_14082661_SNP [dm3] 2L_14082661_SNP [dm6]	C	G	5.319e^-6	0.512	INTRON nAChRalpha5	TF binding site mE1_TFBS_zfh1
2R	13384470	2R_13384470_SNP [dm3] 2R_17496965_SNP [dm6]	G	C	5.470e^-6	0.512	DOWNSTREAM CG30103 INTERGENIC
3R	5911956	3R_5911956_SNP [dm3] 3R_10086234_SNP [dm6]	C	T	5.471e^-6	0.512	INTRON CR45054	TF binding site mE1_TFBS_Trl
2R	14345171	2R_14345171_SNP [dm3] 2R_18457666_SNP [dm6]	C	G	5.503e^-6	0.512	DOWNSTREAM CG30116 INTRON CG30116	TF binding site mE1_TFBS_HSA
2R	13385678	2R_13385678_SNP [dm3] 2R_17498173_SNP [dm6]	G	A	6.328e^-6	0.552	INTERGENIC
3L	13105164	3L_13105164_INS [dm3] 3L_13112064_INS [dm6]	T	TGTTCTCCAG	7.609e^-6	0.552	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	13105167	3L_13105167_SNP [dm3] 3L_13112067_SNP [dm6]	T	C	7.609e^-6	0.552	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	12090463	2L_12090463_INS [dm3] 2L_12090463_INS [dm6]	C	CCATCAGC	7.741e^-6	0.552	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2L	12167556	2L_12167556_SNP [dm3] 2L_12167556_SNP [dm6]	T	A	7.760e^-6	0.552	DOWNSTREAM ZnT33D INTRON CG31760
2L	8373705	2L_8373705_SNP [dm3] 2L_8373705_SNP [dm6]	G	A	8.156e^-6	0.552	SYNONYMOUS_CODING CG17292 UPSTREAM Wdr82	TF binding site mE1_TFBS_HSA
2L	18091693	2L_18091693_SNP [dm3] 2L_18091693_SNP [dm6]	G	A	9.114e^-6	0.552	SYNONYMOUS_CODING CG15153	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18036428	3R_18036428_DEL [dm3] 3R_22210706_DEL [dm6]	GAGAAGGATG	G	9.561e^-6	0.552	INTRON SKIP
3R	18036473	3R_18036473_SNP [dm3] 3R_22210751_SNP [dm6]	G	A	9.561e^-6	0.552	INTRON SKIP
3R	18036501	3R_18036501_SNP [dm3] 3R_22210779_SNP [dm6]	T	C	9.561e^-6	0.552	INTRON SKIP
2L	15759696	2L_15759696_SNP [dm3] 2L_15759696_SNP [dm6]	G	A	9.747e^-6	0.552	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16641946	3R_16641946_SNP [dm3] 3R_20816224_SNP [dm6]	G	T	9.885e^-6	0.552	UPSTREAM Fancd2 DOWNSTREAM CG17270 INTERGENIC	TF binding site mE1_TFBS_jumu
3L	3849290	3L_3849290_SNP [dm3] 3L_3849290_SNP [dm6]	G	T	1.001e^-5	0.552	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10260588	3L_10260588_INS [dm3] 3L_10267488_INS [dm6]	C	AA	1.064e^-5	0.552	UPSTREAM can INTERGENIC	regulatory region REDfly_CRMs
2L	21748597	2L_21748597_SNP [dm3] 2L_21748597_SNP [dm6]	G	T	1.101e^-5	0.552	INTRON step	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10332220	2R_10332220_SNP [dm3] 2R_14444715_SNP [dm6]	T	C	1.129e^-5	0.552	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	22605766	2L_22605766_DEL [dm3] 2L_22713034_DEL [dm6]	TGCTACTA	T	1.161e^-5	0.552	INTRON CG40006
3L	3103557	3L_3103557_SNP [dm3] 3L_3103557_SNP [dm6]	G	T	1.220e^-5	0.552	INTRON Cht7
2R	13383753	2R_13383753_SNP [dm3] 2R_17496248_SNP [dm6]	A	T	1.242e^-5	0.552	DOWNSTREAM CG30103 INTERGENIC
2R	13384063	2R_13384063_SNP [dm3] 2R_17496558_SNP [dm6]	T	C	1.242e^-5	0.552	DOWNSTREAM CG30103 INTERGENIC
X	4614645	X_4614645_SNP [dm3] X_4720612_SNP [dm6]	T	A	1.264e^-5	0.552	INTRON Proc-R
2L	2553667	2L_2553667_SNP [dm3] 2L_2553667_SNP [dm6]	C	G	1.308e^-5	0.552	UPSTREAM CG3515 INTERGENIC
3L	5229784	3L_5229784_SNP [dm3] 3L_5236684_SNP [dm6]	A	T	1.334e^-5	0.552	DOWNSTREAM CG4669 INTRON shep
2L	3458744	2L_3458744_SNP [dm3] 2L_3458744_SNP [dm6]	C	G	1.358e^-5	0.552	SYNONYMOUS_CODING Sec5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13382078	2R_13382078_SNP [dm3] 2R_17494573_SNP [dm6]	G	A	1.391e^-5	0.552	NON_SYNONYMOUS_CODING CG30103
2R	13382079	2R_13382079_SNP [dm3] 2R_17494574_SNP [dm6]	G	A	1.391e^-5	0.552	NON_SYNONYMOUS_CODING CG30103
2R	14475376	2R_14475376_SNP [dm3] 2R_18587871_SNP [dm6]	T	A	1.394e^-5	0.552	INTRON GEFmeso
2L	3458525	2L_3458525_SNP [dm3] 2L_3458525_SNP [dm6]	A	G	1.532e^-5	0.594	SYNONYMOUS_CODING Sec5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2929604	2L_2929604_SNP [dm3] 2L_2929604_SNP [dm6]	G	A	1.644e^-5	0.601	INTRON lilli
X	4196608	X_4196608_SNP [dm3] X_4302575_SNP [dm6]	T	C	1.660e^-5	0.601	UPSTREAM CG12692 INTERGENIC
2R	14475357	2R_14475357_SNP [dm3] 2R_18587852_SNP [dm6]	T	A	1.677e^-5	0.601	INTRON GEFmeso
2L	4727566	2L_4727566_SNP [dm3] 2L_4727566_SNP [dm6]	C	T	1.815e^-5	0.601	INTERGENIC
2R	13381925	2R_13381925_SNP [dm3] 2R_17494420_SNP [dm6]	C	T	1.845e^-5	0.601	SYNONYMOUS_CODING CG30103
2R	13383774	2R_13383774_SNP [dm3] 2R_17496269_SNP [dm6]	C	T	1.845e^-5	0.601	DOWNSTREAM CG30103 INTERGENIC
2R	13383776	2R_13383776_SNP [dm3] 2R_17496271_SNP [dm6]	A	T	1.845e^-5	0.601	DOWNSTREAM CG30103 INTERGENIC
2R	13384238	2R_13384238_SNP [dm3] 2R_17496733_SNP [dm6]	G	T	1.845e^-5	0.601	DOWNSTREAM CG30103 INTERGENIC
2R	10271378	2R_10271378_SNP [dm3] 2R_14383873_SNP [dm6]	G	A	1.928e^-5	0.601	INTRON Dh44-R1	TF binding site BDTNP1_TFBS_da
2R	11472294	2R_11472294_SNP [dm3] 2R_15584789_SNP [dm6]	A	C	1.951e^-5	0.601	INTERGENIC
3L	13105160	3L_13105160_SNP [dm3] 3L_13112060_SNP [dm6]	A	T	1.972e^-5	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	14244503	2L_14244503_SNP [dm3] 2L_14244503_SNP [dm6]	G	A	1.974e^-5	0.601	INTERGENIC
3L	3823388	3L_3823388_SNP [dm3] 3L_3823388_SNP [dm6]	T	C	2.027e^-5	0.601	INTRON enc	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	9968683	3L_9968683_SNP [dm3] 3L_9975583_SNP [dm6]	A	C	2.047e^-5	0.601	UTR_5_PRIME dpr6
2L	14082673	2L_14082673_SNP [dm3] 2L_14082673_SNP [dm6]	G	T	2.064e^-5	0.601	INTRON nAChRalpha5	TF binding site mE1_TFBS_zfh1
X	4196610	X_4196610_SNP [dm3] X_4302577_SNP [dm6]	T	C	2.086e^-5	0.601	UPSTREAM CG12692 INTERGENIC
3L	14281118	3L_14281118_SNP [dm3] 3L_14288018_SNP [dm6]	C	A	2.108e^-5	0.601	INTRON fz	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	13381847	2R_13381847_SNP [dm3] 2R_17494342_SNP [dm6]	T	A	2.130e^-5	0.601	SYNONYMOUS_CODING CG30103
2L	12551106	2L_12551106_SNP [dm3] 2L_12551106_SNP [dm6]	A	C	2.180e^-5	0.605	INTERGENIC
2R	13114236	2R_13114236_SNP [dm3] 2R_17226731_SNP [dm6]	T	A	2.410e^-5	0.626	INTRON mbl
2L	3606086	2L_3606086_SNP [dm3] 2L_3606086_SNP [dm6]	C	G	2.510e^-5	0.626	NON_SYNONYMOUS_CODING odd	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	4196619	X_4196619_SNP [dm3] X_4302586_SNP [dm6]	T	C	2.530e^-5	0.626	UPSTREAM CG12692 INTERGENIC
2R	20209542	2R_20209542_SNP [dm3] 2R_24322019_SNP [dm6]	G	C	2.575e^-5	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13045781	2L_13045781_SNP [dm3] 2L_13045781_SNP [dm6]	T	C	2.612e^-5	0.626	INTRON CG9932
2L	8372336	2L_8372336_SNP [dm3] 2L_8372336_SNP [dm6]	C	A	2.637e^-5	0.626	UPSTREAM CG17292 INTRON CG17292
2L	6046439	2L_6046439_SNP [dm3] 2L_6046439_SNP [dm6]	A	G	2.638e^-5	0.626	UPSTREAM ade2 & 1 other DOWNSTREAM slmo & 1 other INTERGENIC
2L	10552126	2L_10552126_SNP [dm3] 2L_10552126_SNP [dm6]	A	G	2.655e^-5	0.626	INTRON Trim9	TF binding site mE1_TFBS_cad
3L	1780035	3L_1780035_SNP [dm3] 3L_1780035_SNP [dm6]	C	A	2.723e^-5	0.626	INTRON alpha-Spec	TF binding site mE1_TFBS_sens
3R	10785015	3R_10785015_DEL [dm3] 3R_14959293_DEL [dm6]	TA	T	2.746e^-5	0.626	INTERGENIC
2L	6041094	2L_6041094_SNP [dm3] 2L_6041094_SNP [dm6]	C	T	2.799e^-5	0.626	NON_SYNONYMOUS_CODING CG31643 DOWNSTREAM ade2
2L	9101403	2L_9101403_SNP [dm3] 2L_9101403_SNP [dm6]	G	T	2.861e^-5	0.626	INTERGENIC
2R	14471647	2R_14471647_SNP [dm3] 2R_18584142_SNP [dm6]	C	T	2.869e^-5	0.626	UPSTREAM GEFmeso INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3823377	3L_3823377_SNP [dm3] 3L_3823377_SNP [dm6]	T	C	3.045e^-5	0.626	INTRON enc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	11993048	2R_11993048_SNP [dm3] 2R_16105543_SNP [dm6]	A	T	3.065e^-5	0.626	INTRON Rho1
3R	21910770	3R_21910770_SNP [dm3] 3R_26085048_SNP [dm6]	G	A	3.127e^-5	0.626	INTRON dys	TF binding site mE1_TFBS_HSA
2R	17408739	2R_17408739_SNP [dm3] 2R_21521234_SNP [dm6]	A	G	3.149e^-5	0.626	NON_SYNONYMOUS_CODING CG30289 UPSTREAM CG30288
3L	6817532	3L_6817532_SNP [dm3] 3L_6824432_SNP [dm6]	G	C	3.239e^-5	0.626	INTERGENIC	regulatory region REDfly_CRMs
3L	10116256	3L_10116256_SNP [dm3] 3L_10123156_SNP [dm6]	C	T	3.241e^-5	0.626	INTRON dpr6
X	4651773	X_4651773_SNP [dm3] X_4757740_SNP [dm6]	T	C	3.283e^-5	0.626	INTERGENIC
2R	14471645	2R_14471645_INS [dm3] 2R_18584140_INS [dm6]	A	AT	3.325e^-5	0.626	UPSTREAM GEFmeso INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2553644	2L_2553644_SNP [dm3] 2L_2553644_SNP [dm6]	T	A	3.379e^-5	0.626	UPSTREAM CG3515 INTERGENIC
3R	7810943	3R_7810943_SNP [dm3] 3R_11985221_SNP [dm6]	G	A	3.388e^-5	0.626	SYNONYMOUS_CODING mfas UPSTREAM CG3397	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	1375477	2R_1375477_SNP [dm3] 2R_5487972_SNP [dm6]	C	T	3.404e^-5	0.626	INTRON CG30440
2L	8501820	2L_8501820_DEL [dm3] 2L_8501820_DEL [dm6]	CCCAC	C	3.433e^-5	0.626	INTRON Dh31
2L	2025882	2L_2025882_SNP [dm3] 2L_2025882_SNP [dm6]	T	A	3.453e^-5	0.626	INTRON CG4238
2R	10332217	2R_10332217_SNP [dm3] 2R_14444712_SNP [dm6]	T	G	3.466e^-5	0.626	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	10332219	2R_10332219_SNP [dm3] 2R_14444714_SNP [dm6]	C	G	3.466e^-5	0.626	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	9426473	2L_9426473_SNP [dm3] 2L_9426473_SNP [dm6]	A	T	3.523e^-5	0.626	UPSTREAM Fbp2 DOWNSTREAM Mco1 INTERGENIC
2L	973086	2L_973086_SNP [dm3] 2L_973086_SNP [dm6]	A	G	3.531e^-5	0.626	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16764707	2R_16764707_SNP [dm3] 2R_20877202_SNP [dm6]	A	T	3.546e^-5	0.626	INTRON Ipk1
3L	10123911	3L_10123911_SNP [dm3] 3L_10130811_SNP [dm6]	T	C	3.562e^-5	0.626	INTRON dpr6
2R	19976557	2R_19976557_SNP [dm3] 2R_24089034_SNP [dm6]	A	T	3.580e^-5	0.626	SYNONYMOUS_CODING snama
2R	19976578	2R_19976578_SNP [dm3] 2R_24089055_SNP [dm6]	C	T	3.580e^-5	0.626	SYNONYMOUS_CODING snama
2R	7130793	2R_7130793_SNP [dm3] 2R_11243288_SNP [dm6]	G	T	3.621e^-5	0.626	UPSTREAM CG13226 INTERGENIC
X	8423318	X_8423318_SNP [dm3] X_8529285_SNP [dm6]	G	A	3.657e^-5	0.626	INTRON Nrg & 1 other	TF binding site mE1_TFBS_cad
3L	1524714	3L_1524714_SNP [dm3] 3L_1524714_SNP [dm6]	T	C	3.677e^-5	0.626	SYNONYMOUS_CODING CG12090
2L	22249055	2L_22249055_SNP [dm3] 2L_22249055_SNP [dm6]	A	C	3.706e^-5	0.626	UPSTREAM Tif-IA INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16641691	3R_16641691_SNP [dm3] 3R_20815969_SNP [dm6]	G	C	3.713e^-5	0.626	DOWNSTREAM CG17270 INTRON Fancd2	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	3500874	2L_3500874_SNP [dm3] 2L_3500874_SNP [dm6]	A	T	3.737e^-5	0.626	DOWNSTREAM tim INTRON tim
2L	18510730	2L_18510730_SNP [dm3] 2L_18510730_SNP [dm6]	G	T	3.810e^-5	0.626	INTRON CG10178
2R	13380619	2R_13380619_SNP [dm3] 2R_17493114_SNP [dm6]	C	T	3.826e^-5	0.626	UTR_3_PRIME NT5E-2 UPSTREAM CG30103	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	14714295	2R_14714295_SNP [dm3] 2R_18826790_SNP [dm6]	T	C	3.831e^-5	0.626	INTRON CG15097
2R	14714296	2R_14714296_DEL [dm3] 2R_18826791_DEL [dm6]	AATATTTTG	A	3.831e^-5	0.626	INTRON CG15097
3R	21919465	3R_21919465_SNP [dm3] 3R_26093743_SNP [dm6]	A	G	3.853e^-5	0.626	UPSTREAM CR44319 INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd
2L	12776115	2L_12776115_SNP [dm3] 2L_12776115_SNP [dm6]	T	G	3.878e^-5	0.626	INTERGENIC
X	5347122	X_5347122_SNP [dm3] X_5453089_SNP [dm6]	G	A	3.915e^-5	0.626	INTRON SPR
2L	12776114	2L_12776114_SNP [dm3] 2L_12776114_SNP [dm6]	T	A	3.949e^-5	0.626	INTERGENIC
X	6443030	X_6443030_SNP [dm3] X_6548997_SNP [dm6]	T	C	3.951e^-5	0.626	INTRON CG34417
3R	8488651	3R_8488651_SNP [dm3] 3R_12662929_SNP [dm6]	G	A	3.955e^-5	0.626	UTR_5_PRIME CG14395 UPSTREAM CR45586
2R	8616111	2R_8616111_SNP [dm3] 2R_12728606_SNP [dm6]	G	A	4.129e^-5	0.626	INTRON CG42663
2R	8617661	2R_8617661_SNP [dm3] 2R_12730156_SNP [dm6]	T	A	4.156e^-5	0.626	INTRON CG42663	TF binding site BDTNP1_TFBS_dl
X	18294237	X_18294237_SNP [dm3] X_18400204_SNP [dm6]	G	T	4.199e^-5	0.626	UPSTREAM CG34328 INTRON CG32549
2R	1582837	2R_1582837_SNP [dm3] 2R_5695332_SNP [dm6]	A	C	4.260e^-5	0.626	INTERGENIC
X	4196625	X_4196625_SNP [dm3] X_4302592_SNP [dm6]	T	C	4.310e^-5	0.626	UPSTREAM CG12692 INTERGENIC
2L	2554643	2L_2554643_SNP [dm3] 2L_2554643_SNP [dm6]	T	A	4.358e^-5	0.626	INTERGENIC
2R	1780461	2R_1780461_SNP [dm3] 2R_5892956_SNP [dm6]	C	G	4.366e^-5	0.626	UPSTREAM CG43366 INTERGENIC
3L	11624239	3L_11624239_SNP [dm3] 3L_11631139_SNP [dm6]	A	T	4.370e^-5	0.626	UPSTREAM CG32091 DOWNSTREAM CG18815 INTERGENIC
3R	10810457	3R_10810457_SNP [dm3] 3R_14984735_SNP [dm6]	G	C	4.381e^-5	0.626	INTERGENIC
2L	11195139	2L_11195139_SNP [dm3] 2L_11195139_SNP [dm6]	G	T	4.411e^-5	0.626	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_inv
3L	1903360	3L_1903360_SNP [dm3] 3L_1903360_SNP [dm6]	A	G	4.446e^-5	0.626	INTRON CG1887
2L	4687126	2L_4687126_SNP [dm3] 2L_4687126_SNP [dm6]	T	A	4.453e^-5	0.626	UTR_3_PRIME CG11929 UPSTREAM Elba3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8371537	2L_8371537_SNP [dm3] 2L_8371537_SNP [dm6]	T	A	4.490e^-5	0.626	UPSTREAM CR45341 & 1 other INTRON CG17292
3R	7811107	3R_7811107_SNP [dm3] 3R_11985385_SNP [dm6]	G	T	4.490e^-5	0.626	NON_SYNONYMOUS_CODING mfas UPSTREAM CG3397	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18175308	2R_18175308_SNP [dm3] 2R_22287803_SNP [dm6]	T	C	4.523e^-5	0.626	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11948189	X_11948189_SNP [dm3] X_12054156_SNP [dm6]	G	T	4.540e^-5	0.626	INTRON CR43960 & 1 other
2L	8372834	2L_8372834_SNP [dm3] 2L_8372834_SNP [dm6]	T	A	4.583e^-5	0.626	INTRON CG17292	TF binding site mE1_TFBS_HSA
2L	8372861	2L_8372861_SNP [dm3] 2L_8372861_SNP [dm6]	G	T	4.583e^-5	0.626	INTRON CG17292	TF binding site mE1_TFBS_HSA
2R	13380321	2R_13380321_SNP [dm3] 2R_17492816_SNP [dm6]	G	A	4.585e^-5	0.626	NON_SYNONYMOUS_CODING NT5E-2 UPSTREAM CG30103	TF binding site mE1_TFBS_HSA
X	9195987	X_9195987_SNP [dm3] X_9301954_SNP [dm6]	A	T	4.681e^-5	0.626	INTRON lz	TF binding site mE1_TFBS_chinmo
3R	7811976	3R_7811976_SNP [dm3] 3R_11986254_SNP [dm6]	A	G	4.739e^-5	0.626	INTRON mfas	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11980007	2L_11980007_SNP [dm3] 2L_11980007_SNP [dm6]	C	T	4.744e^-5	0.626	INTERGENIC
3R	4557567	3R_4557567_DEL [dm3] 3R_8731845_DEL [dm6]	TTATACT	T	4.758e^-5	0.626	UPSTREAM CG8202 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6045969	2L_6045969_SNP [dm3] 2L_6045969_SNP [dm6]	A	G	4.787e^-5	0.626	UTR_5_PRIME ade2 UPSTREAM ade2 & 1 other DOWNSTREAM slmo & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6891371	2R_6891371_SNP [dm3] 2R_11003866_SNP [dm6]	A	G	4.806e^-5	0.626	INTRON luna
2R	12456708	2R_12456708_SNP [dm3] 2R_16569203_SNP [dm6]	C	T	4.848e^-5	0.626	SYNONYMOUS_CODING CG4945 DOWNSTREAM RpS15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6821593	2R_6821593_SNP [dm3] 2R_10934088_SNP [dm6]	G	A	4.852e^-5	0.626	INTERGENIC
3R	22742885	3R_22742885_SNP [dm3] 3R_26917163_SNP [dm6]	A	C	4.878e^-5	0.626	INTRON sda
2R	2491189	2R_2491189_SNP [dm3] 2R_6603684_SNP [dm6]	G	C	5.054e^-5	0.64	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9258515	2R_9258515_SNP [dm3] 2R_13371010_SNP [dm6]	A	T	5.079e^-5	0.64	INTERGENIC
2R	7066710	2R_7066710_SNP [dm3] 2R_11179205_SNP [dm6]	T	A	5.178e^-5	0.64	INTRON shn	TF binding site mE1_TFBS_inv
2L	3458513	2L_3458513_SNP [dm3] 2L_3458513_SNP [dm6]	A	C	5.260e^-5	0.64	SYNONYMOUS_CODING Sec5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1320820	2L_1320820_SNP [dm3] 2L_1320820_SNP [dm6]	C	T	5.278e^-5	0.64	INTERGENIC
X	20801744	X_20801744_SNP [dm3] X_20930717_SNP [dm6]	C	T	5.355e^-5	0.64	DOWNSTREAM CG11227 INTERGENIC	transposable element FlyBase
X	8423326	X_8423326_SNP [dm3] X_8529293_SNP [dm6]	T	C	5.371e^-5	0.64	INTRON Nrg & 1 other	TF binding site mE1_TFBS_cad
2R	6726485	2R_6726485_SNP [dm3] 2R_10838980_SNP [dm6]	A	C	5.380e^-5	0.64	UPSTREAM CG7686 DOWNSTREAM CG30015 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5223693	X_5223693_SNP [dm3] X_5329660_SNP [dm6]	T	C	5.391e^-5	0.64	UPSTREAM XRCC1 & 1 other INTERGENIC
3R	3962357	3R_3962357_SNP [dm3] 3R_8136635_SNP [dm6]	T	A	5.440e^-5	0.64	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	16762226	2R_16762226_SNP [dm3] 2R_20874721_SNP [dm6]	G	A	5.500e^-5	0.64	UTR_5_PRIME Ipk1 INTRON Ipk1
2R	16762272	2R_16762272_SNP [dm3] 2R_20874767_SNP [dm6]	G	T	5.500e^-5	0.64	INTRON Ipk1
2R	16764756	2R_16764756_SNP [dm3] 2R_20877251_SNP [dm6]	C	A	5.500e^-5	0.64	SPLICE_SITE_REGION Ipk1 INTRON Ipk1
2R	7066709	2R_7066709_SNP [dm3] 2R_11179204_SNP [dm6]	G	A	5.506e^-5	0.64	INTRON shn	TF binding site mE1_TFBS_inv
2L	14082667	2L_14082667_SNP [dm3] 2L_14082667_SNP [dm6]	T	A	5.539e^-5	0.64	INTRON nAChRalpha5	TF binding site mE1_TFBS_zfh1
2R	17866839	2R_17866839_SNP [dm3] 2R_21979334_SNP [dm6]	T	C	5.549e^-5	0.64	SYNONYMOUS_CODING Gr58b UPSTREAM Gr58a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5913793	3R_5913793_INS [dm3] 3R_10088071_INS [dm6]	C	CC	5.632e^-5	0.64	INTRON CR45054	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	20701852	3R_20701852_SNP [dm3] 3R_24876130_SNP [dm6]	G	A	5.687e^-5	0.64	UTR_5_PRIME CG3744 UPSTREAM CG11089 & 1 other INTRON CG3744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14475353	2R_14475353_SNP [dm3] 2R_18587848_SNP [dm6]	T	A	5.700e^-5	0.64	INTRON GEFmeso
2L	7912986	2L_7912986_SNP [dm3] 2L_7912986_SNP [dm6]	T	A	5.706e^-5	0.64	INTRON Snoo
3L	13105332	3L_13105332_SNP [dm3] 3L_13112232_SNP [dm6]	G	A	5.737e^-5	0.64	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	12776121	2L_12776121_SNP [dm3] 2L_12776121_SNP [dm6]	A	G	5.813e^-5	0.64	INTERGENIC
3R	18959053	3R_18959053_DEL [dm3] 3R_23133331_DEL [dm6]	GACACGCA	G	5.846e^-5	0.64	INTRON hh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11317009	3L_11317009_SNP [dm3] 3L_11323909_SNP [dm6]	A	C	5.860e^-5	0.64	UPSTREAM CR44721 DOWNSTREAM CR44723 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1903356	3L_1903356_SNP [dm3] 3L_1903356_SNP [dm6]	A	T	5.944e^-5	0.64	INTRON CG1887
X	16226823	X_16226823_SNP [dm3] X_16332790_SNP [dm6]	A	C	5.973e^-5	0.64	UPSTREAM CG9921 & 1 other INTRON CG9921	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16663156	3L_16663156_SNP [dm3] 3L_16670056_SNP [dm6]	A	T	6.000e^-5	0.64	DOWNSTREAM CR45241 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12004064	3R_12004064_SNP [dm3] 3R_16178342_SNP [dm6]	T	C	6.014e^-5	0.64	INTRON CG8925	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3823392	3L_3823392_SNP [dm3] 3L_3823392_SNP [dm6]	G	C	6.042e^-5	0.64	INTRON enc	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	1012789	2L_1012789_SNP [dm3] 2L_1012789_SNP [dm6]	A	G	6.104e^-5	0.64	UTR_3_PRIME IA-2
2R	10852680	2R_10852680_SNP [dm3] 2R_14965175_SNP [dm6]	A	G	6.163e^-5	0.64	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	7921993	2L_7921993_SNP [dm3] 2L_7921993_SNP [dm6]	C	T	6.180e^-5	0.64	INTRON Snoo
2R	14061089	2R_14061089_SNP [dm3] 2R_18173584_SNP [dm6]	C	T	6.231e^-5	0.64	UPSTREAM Dgp-1 & 1 other DOWNSTREAM CR45315 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	992843	2L_992843_SNP [dm3] 2L_992843_SNP [dm6]	C	A	6.333e^-5	0.64	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14475347	2R_14475347_SNP [dm3] 2R_18587842_SNP [dm6]	C	T	6.417e^-5	0.64	INTRON GEFmeso
3L	10580865	3L_10580865_SNP [dm3] 3L_10587765_SNP [dm6]	A	T	6.420e^-5	0.64	INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7497034	3L_7497034_SNP [dm3] 3L_7503934_SNP [dm6]	T	C	6.430e^-5	0.64	INTERGENIC
X	18293570	X_18293570_SNP [dm3] X_18399537_SNP [dm6]	C	G	6.439e^-5	0.64	DOWNSTREAM CG34328 INTRON CG32549
2R	10958181	2R_10958181_DEL [dm3] 2R_15070676_DEL [dm6]	AAA	A	6.451e^-5	0.64	INTERGENIC
2R	14714315	2R_14714315_SNP [dm3] 2R_18826810_SNP [dm6]	T	C	6.488e^-5	0.64	INTRON CG15097
3R	3960496	3R_3960496_SNP [dm3] 3R_8134774_SNP [dm6]	C	T	6.522e^-5	0.64	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3972522	3R_3972522_SNP [dm3] 3R_8146800_SNP [dm6]	C	A	6.584e^-5	0.64	DOWNSTREAM grn INTERGENIC	TF binding site mE1_TFBS_cnc
3R	5911904	3R_5911904_SNP [dm3] 3R_10086182_SNP [dm6]	A	G	6.619e^-5	0.64	INTRON CR45054	TF binding site mE1_TFBS_Trl
X	17112505	X_17112505_SNP [dm3] X_17218472_SNP [dm6]	T	A	6.656e^-5	0.64	UPSTREAM CG12998 INTERGENIC
X	16777484	X_16777484_SNP [dm3] X_16883451_SNP [dm6]	C	G	6.659e^-5	0.64	DOWNSTREAM CG4872 INTRON CG9104	TF binding site mE1_TFBS_chinmo
2R	17408732	2R_17408732_SNP [dm3] 2R_21521227_SNP [dm6]	G	A	6.679e^-5	0.64	SYNONYMOUS_CODING CG30289 UPSTREAM CG30288
2L	4787597	2L_4787597_SNP [dm3] 2L_4787597_SNP [dm6]	T	A	6.681e^-5	0.64	INTRON CG15630
3R	3962355	3R_3962355_SNP [dm3] 3R_8136633_SNP [dm6]	C	T	6.682e^-5	0.64	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	14239769	2L_14239769_SNP [dm3] 2L_14239769_SNP [dm6]	A	T	6.689e^-5	0.64	INTERGENIC
2R	10272887	2R_10272887_SNP [dm3] 2R_14385382_SNP [dm6]	G	C	6.703e^-5	0.64	DOWNSTREAM Dh44-R1 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21180164	X_21180164_SNP [dm3] X_21309137_SNP [dm6]	G	A	6.847e^-5	0.64	SYNONYMOUS_CODING CG1801
3R	11000086	3R_11000086_DEL [dm3] 3R_15174364_DEL [dm6]	AG	A	6.870e^-5	0.64	DOWNSTREAM Mf INTRON Mf & 1 other
3L	8078653	3L_8078653_SNP [dm3] 3L_8085553_SNP [dm6]	T	C	6.935e^-5	0.64	INTRON Ect4
2R	13386642	2R_13386642_SNP [dm3] 2R_17499137_SNP [dm6]	C	T	6.962e^-5	0.64	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	13387452	2R_13387452_DEL [dm3] 2R_17499947_DEL [dm6]	AATAATACAC	A	6.962e^-5	0.64	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
2L	2928826	2L_2928826_SNP [dm3] 2L_2928826_SNP [dm6]	G	A	7.021e^-5	0.64	INTRON lilli
2R	20686725	2R_20686725_SNP [dm3] 2R_24799202_SNP [dm6]	C	T	7.045e^-5	0.64	SYNONYMOUS_CODING CG3611 DOWNSTREAM CG12849	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8398451	2L_8398451_DEL [dm3] 2L_8398451_DEL [dm6]	CAATAC	C	7.075e^-5	0.64	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
2L	5670445	2L_5670445_SNP [dm3] 2L_5670445_SNP [dm6]	T	C	7.088e^-5	0.64	SYNONYMOUS_CODING Hsp60C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9194645	3L_9194645_SNP [dm3] 3L_9201545_SNP [dm6]	C	T	7.112e^-5	0.64	INTERGENIC
2L	18517368	2L_18517368_DEL [dm3] 2L_18517368_DEL [dm6]	CC	C	7.122e^-5	0.64	UPSTREAM CG10211 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	19107323	2R_19107323_SNP [dm3] 2R_23219800_SNP [dm6]	A	T	7.126e^-5	0.64	INTERGENIC
3L	105174	3L_105174_SNP [dm3] 3L_105174_SNP [dm6]	C	T	7.204e^-5	0.641	INTERGENIC
3R	18036448	3R_18036448_INS [dm3] 3R_22210726_INS [dm6]	C	CAGGC	7.264e^-5	0.641	INTRON SKIP
3R	25451580	3R_25451580_SNP [dm3] 3R_29625858_SNP [dm6]	C	A	7.265e^-5	0.641	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25451581	3R_25451581_SNP [dm3] 3R_29625859_SNP [dm6]	C	A	7.265e^-5	0.641	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	22647923	2L_22647923_SNP [dm3] 2L_22755191_SNP [dm6]	T	G	7.377e^-5	0.647	INTRON CG40006
3L	10260623	3L_10260623_SNP [dm3] 3L_10267523_SNP [dm6]	G	A	7.474e^-5	0.652	UPSTREAM can INTERGENIC	regulatory region REDfly_CRMs
2R	6555381	2R_6555381_SNP [dm3] 2R_10667876_SNP [dm6]	C	T	7.500e^-5	0.652	INTERGENIC
3R	25331380	3R_25331380_SNP [dm3] 3R_29505658_SNP [dm6]	G	A	7.541e^-5	0.653	INTERGENIC
2R	18880221	2R_18880221_SNP [dm3] 2R_22992698_SNP [dm6]	T	G	7.618e^-5	0.655	DOWNSTREAM CG9896 INTRON twi
2R	9304463	2R_9304463_SNP [dm3] 2R_13416958_SNP [dm6]	T	A	7.640e^-5	0.655	INTRON CG42321
3L	12269852	3L_12269852_SNP [dm3] 3L_12276752_SNP [dm6]	A	G	7.740e^-5	0.655	UPSTREAM CG10426 INTRON CG4300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	11193478	2L_11193478_SNP [dm3] 2L_11193478_SNP [dm6]	G	T	7.741e^-5	0.655	INTRON Ca-beta
X	771960	X_771960_SNP [dm3] X_877927_SNP [dm6]	T	C	7.743e^-5	0.655	INTRON CG43867
X	4249363	X_4249363_INS [dm3] X_4355330_INS [dm6]	T	TTT	7.911e^-5	0.659	INTRON norpA	TF binding site mE1_TFBS_HSA
3L	8845254	3L_8845254_SNP [dm3] 3L_8852154_SNP [dm6]	T	A	7.918e^-5	0.659	INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	14475390	2R_14475390_SNP [dm3] 2R_18587885_SNP [dm6]	A	T	7.934e^-5	0.659	INTRON GEFmeso
2L	2051124	2L_2051124_SNP [dm3] 2L_2051124_SNP [dm6]	T	G	7.941e^-5	0.659	INTERGENIC
3R	26213822	3R_26213822_DEL [dm3] 3R_30388100_DEL [dm6]	TTACT	T	7.972e^-5	0.659	UTR_5_PRIME Fer1HCH UPSTREAM Fer2LCH & 1 other INTRON Fer2LCH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	13335123	2L_13335123_SNP [dm3] 2L_13335123_SNP [dm6]	T	A	8.051e^-5	0.661	INTERGENIC
2L	6723690	2L_6723690_SNP [dm3] 2L_6723690_SNP [dm6]	G	A	8.059e^-5	0.661	UPSTREAM Liprin-alpha & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	4564347	2L_4564347_SNP [dm3] 2L_4564347_SNP [dm6]	A	G	8.190e^-5	0.668	INTRON dp	TF binding site mE1_TFBS_cad
3R	9375568	3R_9375568_SNP [dm3] 3R_13549846_SNP [dm6]	T	C	8.313e^-5	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2839224	3L_2839224_DEL [dm3] 3L_2839224_DEL [dm6]	TT	T	8.336e^-5	0.673	INTRON CG43444	TF binding site BDTNP1_TFBS_dl
2R	19107618	2R_19107618_DEL [dm3] 2R_23220095_DEL [dm6]	GG	G	8.362e^-5	0.673	INTERGENIC
3R	5911891	3R_5911891_SNP [dm3] 3R_10086169_SNP [dm6]	T	A	8.403e^-5	0.673	INTRON CR45054	TF binding site mE1_TFBS_Trl
X	17112492	X_17112492_SNP [dm3] X_17218459_SNP [dm6]	T	C	8.427e^-5	0.673	UPSTREAM CG12998 INTERGENIC
3R	10199938	3R_10199938_SNP [dm3] 3R_14374216_SNP [dm6]	G	A	8.618e^-5	0.684	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8909570	3L_8909570_SNP [dm3] 3L_8916470_SNP [dm6]	C	G	8.637e^-5	0.684	DOWNSTREAM CR43970 INTRON Tsp66E
3L	16663124	3L_16663124_SNP [dm3] 3L_16670024_SNP [dm6]	T	C	8.722e^-5	0.686	DOWNSTREAM CR45241 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8909545	3L_8909545_SNP [dm3] 3L_8916445_SNP [dm6]	C	A	8.817e^-5	0.686	DOWNSTREAM CR43970 INTRON Tsp66E
3L	5417071	3L_5417071_SNP [dm3] 3L_5423971_SNP [dm6]	A	G	8.827e^-5	0.686	UPSTREAM CG34391 INTERGENIC
2R	10273738	2R_10273738_DEL [dm3] 2R_14386233_DEL [dm6]	ACA	A	8.864e^-5	0.686	DOWNSTREAM Dh44-R1 INTERGENIC
2L	4689963	2L_4689963_SNP [dm3] 2L_4689963_SNP [dm6]	T	A	8.886e^-5	0.686	NON_SYNONYMOUS_CODING CG3251	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17961962	2L_17961962_SNP [dm3] 2L_17961962_SNP [dm6]	G	A	8.945e^-5	0.686	DOWNSTREAM btv INTERGENIC
2L	22081119	2L_22081119_SNP [dm3] 2L_22081119_SNP [dm6]	A	T	8.975e^-5	0.686	DOWNSTREAM ttm3 INTERGENIC	transposable element FlyBase
2R	10273850	2R_10273850_SNP [dm3] 2R_14386345_SNP [dm6]	T	A	9.053e^-5	0.686	DOWNSTREAM Dh44-R1 INTERGENIC
2L	2025837	2L_2025837_SNP [dm3] 2L_2025837_SNP [dm6]	G	A	9.132e^-5	0.686	INTRON CG4238
3R	25451499	3R_25451499_SNP [dm3] 3R_29625777_SNP [dm6]	A	G	9.133e^-5	0.686	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	10552127	2L_10552127_SNP [dm3] 2L_10552127_SNP [dm6]	G	A	9.148e^-5	0.686	INTRON Trim9	TF binding site mE1_TFBS_cad
X	17326237	X_17326237_SNP [dm3] X_17432204_SNP [dm6]	T	C	9.179e^-5	0.686	INTRON CG12994
3L	12956856	3L_12956856_SNP [dm3] 3L_12963756_SNP [dm6]	G	A	9.214e^-5	0.686	DOWNSTREAM Or69a INTERGENIC
3R	17009847	3R_17009847_SNP [dm3] 3R_21184125_SNP [dm6]	A	T	9.232e^-5	0.686	INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14061077	2R_14061077_SNP [dm3] 2R_18173572_SNP [dm6]	A	C	9.252e^-5	0.686	UPSTREAM Dgp-1 & 1 other DOWNSTREAM CR45315 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10785012	3R_10785012_SNP [dm3] 3R_14959290_SNP [dm6]	T	C	9.349e^-5	0.686	INTERGENIC
2L	10134008	2L_10134008_SNP [dm3] 2L_10134008_SNP [dm6]	T	A	9.366e^-5	0.686	INTRON CG44153
3R	11817193	3R_11817193_DEL [dm3] 3R_15991471_DEL [dm6]	GG	G	9.373e^-5	0.686	UPSTREAM srp INTRON srp & 1 other
2R	13381513	2R_13381513_SNP [dm3] 2R_17494008_SNP [dm6]	C	G	9.511e^-5	0.686	DOWNSTREAM NT5E-2 INTRON CG30103	TF binding site mE1_TFBS_HSA
2R	13382908	2R_13382908_SNP [dm3] 2R_17495403_SNP [dm6]	G	C	9.511e^-5	0.686	NON_SYNONYMOUS_CODING CG30103	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16065419	2R_16065419_SNP [dm3] 2R_20177914_SNP [dm6]	A	C	9.524e^-5	0.686	INTERGENIC
3R	10784976	3R_10784976_DEL [dm3] 3R_14959254_DEL [dm6]	AACTATATACTTT...	A	9.599e^-5	0.686	INTERGENIC
2R	13382052	2R_13382052_SNP [dm3] 2R_17494547_SNP [dm6]	G	A	9.646e^-5	0.686	SPLICE_SITE_REGION CG30103 INTRON CG30103
3L	14281145	3L_14281145_SNP [dm3] 3L_14288045_SNP [dm6]	A	T	9.664e^-5	0.686	INTRON fz	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	14318216	3L_14318216_SNP [dm3] 3L_14325116_SNP [dm6]	G	T	9.682e^-5	0.686	INTRON fz & 1 other
3L	9608222	3L_9608222_SNP [dm3] 3L_9615122_SNP [dm6]	T	G	9.719e^-5	0.686	UPSTREAM LanB2 INTRON LanB2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	9968763	3L_9968763_SNP [dm3] 3L_9975663_SNP [dm6]	T	G	9.734e^-5	0.686	START_GAINED dpr6 UTR_5_PRIME dpr6
2R	14061078	2R_14061078_INS [dm3] 2R_18173573_INS [dm6]	T	TT	9.735e^-5	0.686	UPSTREAM Dgp-1 & 1 other DOWNSTREAM CR45315 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10785019	3R_10785019_SNP [dm3] 3R_14959297_SNP [dm6]	T	A	9.738e^-5	0.686	INTERGENIC
2L	1234371	2L_1234371_SNP [dm3] 2L_1234371_SNP [dm6]	G	A	9.781e^-5	0.687	INTERGENIC
3L	10164724	3L_10164724_SNP [dm3] 3L_10171624_SNP [dm6]	G	A	9.856e^-5	0.689	INTRON dpr10
2L	683478	2L_683478_DEL [dm3] 2L_683478_DEL [dm6]	ACGGAT	A	9.920e^-5	0.691	INTRON ds
2R	13380480	2R_13380480_SNP [dm3] 2R_17492975_SNP [dm6]	C	T	1.005e^-4	0.691	NON_SYNONYMOUS_CODING NT5E-2 UPSTREAM CG30103	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	13380482	2R_13380482_SNP [dm3] 2R_17492977_SNP [dm6]	T	C	1.005e^-4	0.691	SYNONYMOUS_CODING NT5E-2 UPSTREAM CG30103	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3L	10232499	3L_10232499_SNP [dm3] 3L_10239399_SNP [dm6]	A	G	1.006e^-4	0.691	UPSTREAM CR45403 INTERGENIC
2L	15508234	2L_15508234_SNP [dm3] 2L_15508234_SNP [dm6]	G	A	1.007e^-4	0.691	INTERGENIC
2L	8835547	2L_8835547_SNP [dm3] 2L_8835547_SNP [dm6]	T	C	1.017e^-4	0.691	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	10092221	3R_10092221_SNP [dm3] 3R_14266499_SNP [dm6]	C	A	1.022e^-4	0.691	SYNONYMOUS_CODING trx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15794118	X_15794118_SNP [dm3] X_15900085_SNP [dm6]	C	T	1.045e^-4	0.691	INTRON shi
2R	14475392	2R_14475392_SNP [dm3] 2R_18587887_SNP [dm6]	C	A	1.047e^-4	0.691	INTRON GEFmeso
2R	14475393	2R_14475393_SNP [dm3] 2R_18587888_SNP [dm6]	T	A	1.047e^-4	0.691	INTRON GEFmeso
2R	14475396	2R_14475396_SNP [dm3] 2R_18587891_SNP [dm6]	C	T	1.047e^-4	0.691	INTRON GEFmeso
3L	4734342	3L_4734342_SNP [dm3] 3L_4734342_SNP [dm6]	C	T	1.048e^-4	0.691	INTRON RhoGEF64C
2R	12344195	2R_12344195_SNP [dm3] 2R_16456690_SNP [dm6]	A	C	1.048e^-4	0.691	INTERGENIC
3R	4038473	3R_4038473_SNP [dm3] 3R_8212751_SNP [dm6]	C	T	1.053e^-4	0.691	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20794541	2L_20794541_SNP [dm3] 2L_20794541_SNP [dm6]	T	A	1.054e^-4	0.691	UPSTREAM CR44146 & 1 other INTRON vari	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	7534217	2R_7534217_SNP [dm3] 2R_11646712_SNP [dm6]	T	A	1.054e^-4	0.691	UPSTREAM CG9003 INTRON CG9003	TF binding site BDTNP1_TFBS_dl
2R	7534226	2R_7534226_SNP [dm3] 2R_11646721_SNP [dm6]	G	A	1.054e^-4	0.691	UPSTREAM CG9003 INTRON CG9003	TF binding site BDTNP1_TFBS_dl
2R	14475346	2R_14475346_SNP [dm3] 2R_18587841_SNP [dm6]	T	A	1.054e^-4	0.691	INTRON GEFmeso
2L	5891784	2L_5891784_SNP [dm3] 2L_5891784_SNP [dm6]	C	A	1.059e^-4	0.691	DOWNSTREAM Acp26Ab INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	12240977	3R_12240977_SNP [dm3] 3R_16415255_SNP [dm6]	G	C	1.062e^-4	0.691	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z
3R	12646932	3R_12646932_SNP [dm3] 3R_16821210_SNP [dm6]	G	A	1.075e^-4	0.691	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	987576	2L_987576_SNP [dm3] 2L_987576_SNP [dm6]	G	A	1.076e^-4	0.691	DOWNSTREAM CR44801 INTERGENIC
3L	8909543	3L_8909543_SNP [dm3] 3L_8916443_SNP [dm6]	G	T	1.076e^-4	0.691	DOWNSTREAM CR43970 INTRON Tsp66E
X	4196620	X_4196620_SNP [dm3] X_4302587_SNP [dm6]	C	A	1.076e^-4	0.691	UPSTREAM CG12692 INTERGENIC
2L	9043145	2L_9043145_SNP [dm3] 2L_9043145_SNP [dm6]	T	C	1.083e^-4	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4045231	3R_4045231_SNP [dm3] 3R_8219509_SNP [dm6]	G	A	1.093e^-4	0.696	NON_SYNONYMOUS_CODING CG7800 UPSTREAM CG18249
X	4914282	X_4914282_SNP [dm3] X_5020249_SNP [dm6]	A	T	1.100e^-4	0.699	INTRON CR44833	regulatory region REDfly_CRMs
2L	9101433	2L_9101433_SNP [dm3] 2L_9101433_SNP [dm6]	G	A	1.114e^-4	0.705	INTERGENIC
3R	26199432	3R_26199432_SNP [dm3] 3R_30373710_SNP [dm6]	G	A	1.119e^-4	0.705	INTERGENIC
2L	12752178	2L_12752178_SNP [dm3] 2L_12752178_SNP [dm6]	A	G	1.134e^-4	0.713	INTERGENIC
3R	5448614	3R_5448614_SNP [dm3] 3R_9622892_SNP [dm6]	C	T	1.156e^-4	0.716	UPSTREAM CG8312 INTRON CG8312	TF binding site mE1_TFBS_cad
2R	17408631	2R_17408631_SNP [dm3] 2R_21521126_SNP [dm6]	C	G	1.171e^-4	0.716	UPSTREAM CG30288 INTRON CG30289
2R	13380795	2R_13380795_SNP [dm3] 2R_17493290_SNP [dm6]	C	A	1.172e^-4	0.716	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3R	12646904	3R_12646904_INS [dm3] 3R_16821182_INS [dm6]	A	AA	1.174e^-4	0.716	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12646910	3R_12646910_SNP [dm3] 3R_16821188_SNP [dm6]	G	A	1.174e^-4	0.716	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12646938	3R_12646938_SNP [dm3] 3R_16821216_SNP [dm6]	C	G	1.174e^-4	0.716	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12646945	3R_12646945_SNP [dm3] 3R_16821223_SNP [dm6]	A	G	1.174e^-4	0.716	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12646956	3R_12646956_SNP [dm3] 3R_16821234_SNP [dm6]	G	T	1.174e^-4	0.716	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12646958	3R_12646958_DEL [dm3] 3R_16821236_DEL [dm6]	TAATA	T	1.174e^-4	0.716	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	3882513	2R_3882513_SNP [dm3] 2R_7995008_SNP [dm6]	T	C	1.188e^-4	0.719	UPSTREAM Dic3 DOWNSTREAM Hey INTERGENIC	TF binding site mE1_TFBS_cad
2R	14742947	2R_14742947_SNP [dm3] 2R_18855442_SNP [dm6]	A	T	1.192e^-4	0.719	UPSTREAM Jheh1 DOWNSTREAM Jheh2 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2R	13380760	2R_13380760_SNP [dm3] 2R_17493255_SNP [dm6]	T	A	1.194e^-4	0.719	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3R	19048309	3R_19048309_SNP [dm3] 3R_23222587_SNP [dm6]	T	A	1.194e^-4	0.719	UPSTREAM cnc INTRON cnc
3L	22430883	3L_22430883_SNP [dm3] 3L_22437783_SNP [dm6]	T	C	1.203e^-4	0.719	INTERGENIC
2R	2572319	2R_2572319_SNP [dm3] 2R_6684814_SNP [dm6]	T	C	1.209e^-4	0.719	UTR_3_PRIME Tdc2 DOWNSTREAM CG15909 INTRON CG9422
2L	1752679	2L_1752679_SNP [dm3] 2L_1752679_SNP [dm6]	G	A	1.210e^-4	0.719	SYNONYMOUS_CODING CG17648 UPSTREAM CG17712	TF binding site BDTNP1_TFBS_twi
2R	10275626	2R_10275626_SNP [dm3] 2R_14388121_SNP [dm6]	G	A	1.220e^-4	0.719	INTERGENIC
2L	2025262	2L_2025262_SNP [dm3] 2L_2025262_SNP [dm6]	G	A	1.224e^-4	0.719	INTRON CG4238
2L	12776371	2L_12776371_SNP [dm3] 2L_12776371_SNP [dm6]	G	T	1.232e^-4	0.719	INTERGENIC
2L	12776433	2L_12776433_SNP [dm3] 2L_12776433_SNP [dm6]	C	T	1.232e^-4	0.719	INTERGENIC
2R	12109170	2R_12109170_DEL [dm3] 2R_16221665_DEL [dm6]	ATTA	A	1.241e^-4	0.719	SPLICE_SITE_DONOR mrj DOWNSTREAM CG7798 INTRON mrj EXON CR43898	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
2L	1321708	2L_1321708_SNP [dm3] 2L_1321708_SNP [dm6]	A	C	1.243e^-4	0.719	INTERGENIC
3L	16874699	3L_16874699_SNP [dm3] 3L_16881599_SNP [dm6]	T	A	1.244e^-4	0.719	INTRON Lmpt
2L	9045032	2L_9045032_SNP [dm3] 2L_9045032_SNP [dm6]	C	T	1.250e^-4	0.719	INTERGENIC
2R	8435428	2R_8435428_SNP [dm3] 2R_12547923_SNP [dm6]	G	C	1.253e^-4	0.719	INTRON fra	TF binding site mE1_TFBS_cad
X	19908565	X_19908565_SNP [dm3] X_20014532_SNP [dm6]	A	T	1.253e^-4	0.719	UPSTREAM Dop2R INTRON Dop2R
3R	25329855	3R_25329855_SNP [dm3] 3R_29504133_SNP [dm6]	C	G	1.256e^-4	0.719	UPSTREAM Trc8 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	25329865	3R_25329865_SNP [dm3] 3R_29504143_SNP [dm6]	A	T	1.256e^-4	0.719	UPSTREAM Trc8 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	18824957	3L_18824957_SNP [dm3] 3L_18831857_SNP [dm6]	T	C	1.270e^-4	0.719	INTRON Indy
3L	2879726	3L_2879726_SNP [dm3] 3L_2879726_SNP [dm6]	T	C	1.276e^-4	0.719	UPSTREAM CG43444 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8617430	X_8617430_SNP [dm3] X_8723397_SNP [dm6]	A	C	1.277e^-4	0.719	INTERGENIC
3R	14127764	3R_14127764_SNP [dm3] 3R_18302042_SNP [dm6]	T	A	1.284e^-4	0.719	UPSTREAM CG18600 DOWNSTREAM CG7126 INTERGENIC	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4077078	3R_4077078_INS [dm3] 3R_8251356_INS [dm6]	G	GCCTTCAATTAAATTCTTGC...	1.286e^-4	0.719	INTRON mtg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	721573	2R_721573_SNP [dm3] 2R_4834068_SNP [dm6]	C	A	1.290e^-4	0.719	INTERGENIC	transposable element FlyBase
2L	1024350	2L_1024350_SNP [dm3] 2L_1024350_SNP [dm6]	A	C	1.291e^-4	0.719	INTRON IA-2
2L	18819176	2L_18819176_SNP [dm3] 2L_18819176_SNP [dm6]	G	A	1.296e^-4	0.719	UPSTREAM CG17324 INTERGENIC
3R	17003310	3R_17003310_SNP [dm3] 3R_21177588_SNP [dm6]	A	T	1.314e^-4	0.719	INTRON SNF4Agamma
3R	24134287	3R_24134287_SNP [dm3] 3R_28308565_SNP [dm6]	T	C	1.316e^-4	0.719	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24134306	3R_24134306_SNP [dm3] 3R_28308584_SNP [dm6]	G	T	1.316e^-4	0.719	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9194643	3L_9194643_SNP [dm3] 3L_9201543_SNP [dm6]	G	C	1.317e^-4	0.719	INTERGENIC
3L	1259092	3L_1259092_SNP [dm3] 3L_1259092_SNP [dm6]	C	G	1.319e^-4	0.719	INTRON CG9134
3R	4531599	3R_4531599_SNP [dm3] 3R_8705877_SNP [dm6]	T	C	1.321e^-4	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	17726552	2R_17726552_SNP [dm3] 2R_21839047_SNP [dm6]	T	A	1.322e^-4	0.719	UPSTREAM CG4372 INTERGENIC
2R	17726556	2R_17726556_SNP [dm3] 2R_21839051_SNP [dm6]	G	A	1.322e^-4	0.719	UPSTREAM CG4372 INTERGENIC
X	17326229	X_17326229_SNP [dm3] X_17432196_SNP [dm6]	A	G	1.328e^-4	0.719	INTRON CG12994
2R	17063779	2R_17063779_SNP [dm3] 2R_21176274_SNP [dm6]	T	G	1.329e^-4	0.719	INTRON Pu
2L	12776476	2L_12776476_SNP [dm3] 2L_12776476_SNP [dm6]	A	C	1.332e^-4	0.719	INTERGENIC
X	14228198	X_14228198_SNP [dm3] X_14334165_SNP [dm6]	A	G	1.333e^-4	0.719	INTRON dpr8	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11192334	2L_11192334_SNP [dm3] 2L_11192334_SNP [dm6]	T	A	1.338e^-4	0.719	INTRON Ca-beta
3L	2648837	3L_2648837_SNP [dm3] 3L_2648837_SNP [dm6]	T	C	1.346e^-4	0.719	INTRON CG1246
3L	8909566	3L_8909566_SNP [dm3] 3L_8916466_SNP [dm6]	T	A	1.354e^-4	0.719	DOWNSTREAM CR43970 INTRON Tsp66E
3L	13125599	3L_13125599_SNP [dm3] 3L_13132499_SNP [dm6]	G	C	1.361e^-4	0.719	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	8682543	3L_8682543_SNP [dm3] 3L_8689443_SNP [dm6]	A	T	1.361e^-4	0.719	INTERGENIC
X	3985722	X_3985722_SNP [dm3] X_4091689_SNP [dm6]	G	A	1.361e^-4	0.719	UTR_3_PRIME CG43689 DOWNSTREAM CG43689
X	15524687	X_15524687_SNP [dm3] X_15630654_SNP [dm6]	C	T	1.367e^-4	0.719	INTRON sog
2R	13380794	2R_13380794_SNP [dm3] 2R_17493289_SNP [dm6]	G	T	1.370e^-4	0.719	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3L	17332761	3L_17332761_SNP [dm3] 3L_17339661_SNP [dm6]	G	A	1.374e^-4	0.719	UPSTREAM CG6479 DOWNSTREAM tRNA:CR32173 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
2L	973081	2L_973081_DEL [dm3] 2L_973081_DEL [dm6]	CC	C	1.374e^-4	0.719	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	12646964	3R_12646964_SNP [dm3] 3R_16821242_SNP [dm6]	A	G	1.378e^-4	0.719	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14475398	2R_14475398_SNP [dm3] 2R_18587893_SNP [dm6]	C	T	1.383e^-4	0.719	INTRON GEFmeso
2R	13380754	2R_13380754_SNP [dm3] 2R_17493249_SNP [dm6]	G	C	1.383e^-4	0.719	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
X	15358594	X_15358594_SNP [dm3] X_15464561_SNP [dm6]	G	A	1.385e^-4	0.719	UTR_3_PRIME CG6294 UPSTREAM CG6299 INTRON CG6299 & 1 other	TF binding site mE1_TFBS_chinmo
X	17372373	X_17372373_SNP [dm3] X_17478340_SNP [dm6]	C	A	1.392e^-4	0.719	INTRON CG43658
3R	14127767	3R_14127767_SNP [dm3] 3R_18302045_SNP [dm6]	T	G	1.392e^-4	0.719	UPSTREAM CG18600 DOWNSTREAM CG7126 INTERGENIC	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1651854	2L_1651854_INS [dm3] 2L_1651854_INS [dm6]	T	TATGT	1.394e^-4	0.719	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4587466	2L_4587466_DEL [dm3] 2L_4587466_DEL [dm6]	ATGTTTA	A	1.400e^-4	0.72	INTRON dp
2L	10808760	2L_10808760_SNP [dm3] 2L_10808760_SNP [dm6]	G	T	1.407e^-4	0.721	INTRON Nos
X	21325126	X_21325126_SNP [dm3] X_21454099_SNP [dm6]	A	C	1.428e^-4	0.727	INTRON CG42343
2R	14475411	2R_14475411_SNP [dm3] 2R_18587906_SNP [dm6]	G	T	1.430e^-4	0.727	INTRON GEFmeso
2L	16328013	2L_16328013_SNP [dm3] 2L_16328013_SNP [dm6]	T	A	1.430e^-4	0.727	NON_SYNONYMOUS_CODING CG4278 DOWNSTREAM mRpL4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10091164	2L_10091164_SNP [dm3] 2L_10091164_SNP [dm6]	T	C	1.435e^-4	0.727	DOWNSTREAM CG13133 INTRON CG44153
2R	4321471	2R_4321471_SNP [dm3] 2R_8433966_SNP [dm6]	A	G	1.442e^-4	0.729	UTR_3_PRIME Lcp2 UPSTREAM Lcp1Psi DOWNSTREAM Lcp2
X	6024431	X_6024431_SNP [dm3] X_6130398_SNP [dm6]	T	C	1.452e^-4	0.732	INTRON Ca-alpha1T
3R	5970395	3R_5970395_SNP [dm3] 3R_10144673_SNP [dm6]	C	T	1.465e^-4	0.735	UTR_5_PRIME Invadolysin UPSTREAM TAF1B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
X	16622845	X_16622845_SNP [dm3] X_16728812_SNP [dm6]	T	C	1.466e^-4	0.735	SYNONYMOUS_CODING CG9634
3R	17010742	3R_17010742_SNP [dm3] 3R_21185020_SNP [dm6]	T	G	1.483e^-4	0.735	UTR_5_PRIME SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3L	10164742	3L_10164742_SNP [dm3] 3L_10171642_SNP [dm6]	G	A	1.488e^-4	0.735	INTRON dpr10
3R	10417140	3R_10417140_DEL [dm3] 3R_14591418_DEL [dm6]	TGGGATTTTTCGGT...	T	1.491e^-4	0.735	UPSTREAM stumps INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10785035	3R_10785035_SNP [dm3] 3R_14959313_SNP [dm6]	T	A	1.494e^-4	0.735	INTERGENIC
2R	1582484	2R_1582484_SNP [dm3] 2R_5694979_SNP [dm6]	C	A	1.501e^-4	0.735	INTERGENIC
2R	7534251	2R_7534251_SNP [dm3] 2R_11646746_SNP [dm6]	A	G	1.503e^-4	0.735	UPSTREAM CG9003 INTRON CG9003	TF binding site BDTNP1_TFBS_dl
3L	16874700	3L_16874700_SNP [dm3] 3L_16881600_SNP [dm6]	A	T	1.505e^-4	0.735	INTRON Lmpt
2L	3458969	2L_3458969_SNP [dm3] 2L_3458969_SNP [dm6]	T	C	1.508e^-4	0.735	SYNONYMOUS_CODING Sec5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5244812	3L_5244812_SNP [dm3] 3L_5251712_SNP [dm6]	T	C	1.509e^-4	0.735	INTRON shep	TF binding site mE1_TFBS_inv
3L	1880751	3L_1880751_SNP [dm3] 3L_1880751_SNP [dm6]	C	A	1.513e^-4	0.735	INTRON CG13937	TF binding site mE1_TFBS_chinmo
2R	13380407	2R_13380407_SNP [dm3] 2R_17492902_SNP [dm6]	C	T	1.525e^-4	0.735	SYNONYMOUS_CODING NT5E-2 UPSTREAM CG30103	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	5135898	3L_5135898_SNP [dm3] 3L_5142798_SNP [dm6]	C	T	1.525e^-4	0.735	INTRON CG4623
2L	8415297	2L_8415297_SNP [dm3] 2L_8415297_SNP [dm6]	A	G	1.528e^-4	0.735	UPSTREAM Akap200 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3R	10785094	3R_10785094_SNP [dm3] 3R_14959372_SNP [dm6]	T	G	1.530e^-4	0.735	INTERGENIC
3R	26200591	3R_26200591_SNP [dm3] 3R_30374869_SNP [dm6]	G	T	1.546e^-4	0.735	INTERGENIC
X	14228207	X_14228207_SNP [dm3] X_14334174_SNP [dm6]	T	A	1.546e^-4	0.735	INTRON dpr8	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5136061	3L_5136061_SNP [dm3] 3L_5142961_SNP [dm6]	T	C	1.557e^-4	0.735	INTRON CG4623
3L	7700697	3L_7700697_SNP [dm3] 3L_7707597_SNP [dm6]	C	G	1.559e^-4	0.735	INTRON CG32373 & 1 other	TF binding site mE1_TFBS_chinmo
2R	20099191	2R_20099191_SNP [dm3] 2R_24211668_SNP [dm6]	C	A	1.563e^-4	0.735	DOWNSTREAM CG30419 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	17439432	2R_17439432_SNP [dm3] 2R_21551927_SNP [dm6]	C	T	1.564e^-4	0.735	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9614760	3L_9614760_SNP [dm3] 3L_9621660_SNP [dm6]	C	T	1.564e^-4	0.735	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17183671	2R_17183671_DEL [dm3] 2R_21296166_DEL [dm6]	CC	C	1.572e^-4	0.735	UTR_5_PRIME CG42672 UPSTREAM CG9752	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
2L	11980011	2L_11980011_SNP [dm3] 2L_11980011_SNP [dm6]	C	T	1.574e^-4	0.735	INTERGENIC
2L	5147461	2L_5147461_SNP [dm3] 2L_5147461_SNP [dm6]	C	A	1.580e^-4	0.735	INTRON Msp300
3R	17141370	3R_17141370_DEL [dm3] 3R_21315648_DEL [dm6]	AGACA	A	1.585e^-4	0.735	EXON Hsromega	TF binding site mE1_TFBS_zfh1
2R	9907744	2R_9907744_SNP [dm3] 2R_14020239_SNP [dm6]	G	A	1.601e^-4	0.735	INTRON mam
3R	26655797	3R_26655797_SNP [dm3] 3R_30830075_SNP [dm6]	A	G	1.602e^-4	0.735	INTRON CG15544
3R	12072259	3R_12072259_SNP [dm3] 3R_16246537_SNP [dm6]	C	T	1.605e^-4	0.735	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
3R	12072270	3R_12072270_DEL [dm3] 3R_16246548_DEL [dm6]	TACCTGACTGTACGAAGTAT...	CACCTGACTGTACGAAGTAA...	1.605e^-4	0.735	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
3R	5911965	3R_5911965_SNP [dm3] 3R_10086243_SNP [dm6]	G	C	1.606e^-4	0.735	INTRON CR45054	TF binding site mE1_TFBS_Trl
2L	2564201	2L_2564201_SNP [dm3] 2L_2564201_SNP [dm6]	T	C	1.614e^-4	0.735	SYNONYMOUS_CODING Cyp309a1 DOWNSTREAM Cyp309a2
2R	9905410	2R_9905410_INS [dm3] 2R_14017905_INS [dm6]	AAG	TGCC	1.618e^-4	0.735	INTRON mam
2L	3824241	2L_3824241_SNP [dm3] 2L_3824241_SNP [dm6]	G	A	1.622e^-4	0.735	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	14061096	2R_14061096_INS [dm3] 2R_18173591_INS [dm6]	A	AGAA	1.624e^-4	0.735	UPSTREAM Dgp-1 & 1 other DOWNSTREAM CR45315 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16482801	3L_16482801_INS [dm3] 3L_16489701_INS [dm6]	G	GATTTGG	1.625e^-4	0.735	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	17408810	2R_17408810_SNP [dm3] 2R_21521305_SNP [dm6]	G	A	1.628e^-4	0.735	SYNONYMOUS_CODING CG30289 UPSTREAM CG30288	TF binding site BDTNP1_TFBS_dl
2L	6496303	2L_6496303_SNP [dm3] 2L_6496303_SNP [dm6]	T	A	1.630e^-4	0.735	UTR_3_PRIME CG31638 UPSTREAM CG9550
3R	25794942	3R_25794942_SNP [dm3] 3R_29969220_SNP [dm6]	T	C	1.636e^-4	0.735	UTR_5_PRIME TkR99D
X	8686298	X_8686298_SNP [dm3] X_8792265_SNP [dm6]	T	G	1.638e^-4	0.735	INTRON Lim1
2L	9207760	2L_9207760_SNP [dm3] 2L_9207760_SNP [dm6]	C	T	1.644e^-4	0.735	INTRON tai
2R	1584116	2R_1584116_SNP [dm3] 2R_5696611_SNP [dm6]	A	G	1.648e^-4	0.735	INTERGENIC	transposable element FlyBase
2R	7146853	2R_7146853_SNP [dm3] 2R_11259348_SNP [dm6]	A	G	1.657e^-4	0.735	NON_SYNONYMOUS_CODING Cpr47Ec DOWNSTREAM CG13223
2R	13382623	2R_13382623_SNP [dm3] 2R_17495118_SNP [dm6]	A	C	1.667e^-4	0.735	SYNONYMOUS_CODING CG30103	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13381144	2R_13381144_SNP [dm3] 2R_17493639_SNP [dm6]	C	G	1.669e^-4	0.735	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2L	2554124	2L_2554124_SNP [dm3] 2L_2554124_SNP [dm6]	C	G	1.673e^-4	0.735	INTERGENIC
3R	15888154	3R_15888154_SNP [dm3] 3R_20062432_SNP [dm6]	G	A	1.674e^-4	0.735	INTERGENIC
2L	5261010	2L_5261010_SNP [dm3] 2L_5261010_SNP [dm6]	G	A	1.679e^-4	0.735	INTRON tkv
2R	15037508	2R_15037508_SNP [dm3] 2R_19150003_SNP [dm6]	T	G	1.680e^-4	0.735	INTRON ena
2L	2929619	2L_2929619_SNP [dm3] 2L_2929619_SNP [dm6]	G	C	1.683e^-4	0.735	INTRON lilli
3R	7739054	3R_7739054_SNP [dm3] 3R_11913332_SNP [dm6]	G	T	1.684e^-4	0.735	INTRON Cad87A
2L	1008947	2L_1008947_SNP [dm3] 2L_1008947_SNP [dm6]	T	G	1.685e^-4	0.735	UTR_3_PRIME IA-2
X	4914182	X_4914182_SNP [dm3] X_5020149_SNP [dm6]	T	C	1.686e^-4	0.735	INTRON CR44833	regulatory region REDfly_CRMs
X	4914256	X_4914256_DEL [dm3] X_5020223_DEL [dm6]	TCAATTAATAAATCATTATT...	T	1.686e^-4	0.735	INTRON CR44833	regulatory region REDfly_CRMs
2R	20474725	2R_20474725_SNP [dm3] 2R_24587202_SNP [dm6]	A	T	1.689e^-4	0.735	UPSTREAM pio INTRON pio
3L	14291822	3L_14291822_SNP [dm3] 3L_14298722_SNP [dm6]	T	A	1.693e^-4	0.735	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	8074733	2L_8074733_SNP [dm3] 2L_8074733_SNP [dm6]	A	G	1.697e^-4	0.735	UTR_3_PRIME Mcr DOWNSTREAM Trf
3R	5914025	3R_5914025_SNP [dm3] 3R_10088303_SNP [dm6]	C	T	1.702e^-4	0.735	INTRON CR45054
2L	7193289	2L_7193289_SNP [dm3] 2L_7193289_SNP [dm6]	C	T	1.707e^-4	0.735	SYNONYMOUS_CODING CG4497
2R	10332268	2R_10332268_SNP [dm3] 2R_14444763_SNP [dm6]	A	T	1.713e^-4	0.735	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	1733081	2L_1733081_SNP [dm3] 2L_1733081_SNP [dm6]	T	A	1.714e^-4	0.735	UPSTREAM CG17652 INTRON CG17646	TF binding site BDTNP1_TFBS_dl
3R	6375937	3R_6375937_SNP [dm3] 3R_10550215_SNP [dm6]	A	T	1.721e^-4	0.735	INTRON hth
3L	1903361	3L_1903361_SNP [dm3] 3L_1903361_SNP [dm6]	A	C	1.726e^-4	0.735	INTRON CG1887
3R	16905317	3R_16905317_SNP [dm3] 3R_21079595_SNP [dm6]	C	G	1.734e^-4	0.735	INTRON HHEX
3L	1903336	3L_1903336_SNP [dm3] 3L_1903336_SNP [dm6]	G	A	1.740e^-4	0.735	INTRON CG1887
2L	8401970	2L_8401970_SNP [dm3] 2L_8401970_SNP [dm6]	T	A	1.741e^-4	0.735	NON_SYNONYMOUS_CODING fy DOWNSTREAM CG31898
2R	16634197	2R_16634197_SNP [dm3] 2R_20746692_SNP [dm6]	C	T	1.749e^-4	0.735	INTRON dpr
2R	13113334	2R_13113334_SNP [dm3] 2R_17225829_SNP [dm6]	G	A	1.750e^-4	0.735	INTRON mbl
2L	16046550	2L_16046550_SNP [dm3] 2L_16046550_SNP [dm6]	G	A	1.752e^-4	0.735	INTRON BicC & 1 other
3L	18655191	3L_18655191_SNP [dm3] 3L_18662091_SNP [dm6]	C	G	1.758e^-4	0.735	INTRON MYPT-75D
X	8881103	X_8881103_SNP [dm3] X_8987070_SNP [dm6]	A	C	1.762e^-4	0.735	INTRON rdgA & 1 other
2L	9425935	2L_9425935_SNP [dm3] 2L_9425935_SNP [dm6]	C	A	1.763e^-4	0.735	SYNONYMOUS_CODING Mco1 UPSTREAM Fbp2
3R	2917573	3R_2917573_SNP [dm3] 3R_7091851_SNP [dm6]	G	A	1.765e^-4	0.735	DOWNSTREAM CR43685 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	4491103	3R_4491103_SNP [dm3] 3R_8665381_SNP [dm6]	G	C	1.766e^-4	0.735	INTRON CG8032	TF binding site BDTNP1_TFBS_twi
2R	10274648	2R_10274648_DEL [dm3] 2R_14387143_DEL [dm6]	TT	T	1.766e^-4	0.735	INTERGENIC
3L	10125117	3L_10125117_SNP [dm3] 3L_10132017_SNP [dm6]	G	A	1.767e^-4	0.735	INTRON dpr6
2L	18517215	2L_18517215_SNP [dm3] 2L_18517215_SNP [dm6]	G	A	1.767e^-4	0.735	UPSTREAM CG10211 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	22420626	2L_22420626_SNP [dm3] 2L_22527894_SNP [dm6]	A	C	1.782e^-4	0.735	INTERGENIC
3R	20162311	3R_20162311_SNP [dm3] 3R_24336589_SNP [dm6]	A	G	1.787e^-4	0.735	NON_SYNONYMOUS_CODING Dis3 UPSTREAM CG6432	TF binding site mE1_TFBS_cad
2L	8246892	2L_8246892_SNP [dm3] 2L_8246892_SNP [dm6]	C	T	1.791e^-4	0.735	SYNONYMOUS_CODING CG8086 INTRON CG8086
2L	1707752	2L_1707752_SNP [dm3] 2L_1707752_SNP [dm6]	G	A	1.793e^-4	0.735	UTR_3_PRIME CG17660 UPSTREAM CR44976 DOWNSTREAM cpb	TF binding site mE1_TFBS_cad
2L	1707753	2L_1707753_SNP [dm3] 2L_1707753_SNP [dm6]	G	A	1.793e^-4	0.735	UTR_3_PRIME CG17660 UPSTREAM CR44976 DOWNSTREAM cpb	TF binding site mE1_TFBS_cad
2L	16060682	2L_16060682_SNP [dm3] 2L_16060682_SNP [dm6]	A	T	1.796e^-4	0.735	INTRON beat-Ia
2R	9907300	2R_9907300_SNP [dm3] 2R_14019795_SNP [dm6]	C	T	1.798e^-4	0.735	INTRON mam
2L	15128780	2L_15128780_SNP [dm3] 2L_15128780_SNP [dm6]	C	A	1.798e^-4	0.735	UPSTREAM CR43854 EXON CR44706
3L	13179664	3L_13179664_SNP [dm3] 3L_13186564_SNP [dm6]	C	T	1.808e^-4	0.737	INTERGENIC
3L	16685683	3L_16685683_DEL [dm3] 3L_16692583_DEL [dm6]	TCCATGT	T	1.809e^-4	0.737	INTRON Lasp & 2 others	TF binding site mE1_TFBS_cad
2R	13380680	2R_13380680_SNP [dm3] 2R_17493175_SNP [dm6]	G	T	1.820e^-4	0.738	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
X	8858828	X_8858828_SNP [dm3] X_8964795_SNP [dm6]	C	A	1.820e^-4	0.738	INTRON rdgA
X	21460428	X_21460428_SNP [dm3] X_21589401_SNP [dm6]	C	T	1.831e^-4	0.74	INTERGENIC
2L	2025794	2L_2025794_SNP [dm3] 2L_2025794_SNP [dm6]	A	T	1.839e^-4	0.741	INTRON CG4238
2L	13099103	2L_13099103_INS [dm3] 2L_13099103_INS [dm6]	A	AATCGACA	1.842e^-4	0.741	INTERGENIC
3L	2159176	3L_2159176_SNP [dm3] 3L_2159176_SNP [dm6]	G	C	1.848e^-4	0.741	INTRON CG15822	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11591899	2L_11591899_SNP [dm3] 2L_11591899_SNP [dm6]	C	T	1.851e^-4	0.741	UPSTREAM Acp33A INTRON kek2
X	13026116	X_13026116_SNP [dm3] X_13132083_SNP [dm6]	T	C	1.859e^-4	0.741	INTRON MFS10 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	12288804	3L_12288804_SNP [dm3] 3L_12295704_SNP [dm6]	T	A	1.859e^-4	0.741	INTRON CG4328
X	771965	X_771965_INS [dm3] X_877932_INS [dm6]	T	TG	1.866e^-4	0.741	INTRON CG43867
3R	23327794	3R_23327794_DEL [dm3] 3R_27502072_DEL [dm6]	TA	T	1.867e^-4	0.741	UPSTREAM CG43139 DOWNSTREAM CG5402 INTERGENIC
3L	15957004	3L_15957004_SNP [dm3] 3L_15963904_SNP [dm6]	G	A	1.868e^-4	0.741	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11867833	3L_11867833_SNP [dm3] 3L_11874733_SNP [dm6]	T	C	1.875e^-4	0.741	INTRON CG44837
X	578361	X_578361_SNP [dm3] X_684328_SNP [dm6]	T	C	1.877e^-4	0.741	INTERGENIC
3R	3960591	3R_3960591_SNP [dm3] 3R_8134869_SNP [dm6]	T	A	1.891e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11333169	X_11333169_SNP [dm3] X_11439136_SNP [dm6]	G	A	1.892e^-4	0.743	INTRON Evi5
2R	9907136	2R_9907136_SNP [dm3] 2R_14019631_SNP [dm6]	T	G	1.898e^-4	0.743	INTRON mam	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9806910	3R_9806910_DEL [dm3] 3R_13981188_DEL [dm6]	GG	G	1.901e^-4	0.743	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	9806930	3R_9806930_SNP [dm3] 3R_13981208_SNP [dm6]	T	G	1.901e^-4	0.743	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	10347101	2L_10347101_SNP [dm3] 2L_10347101_SNP [dm6]	G	A	1.905e^-4	0.743	SYNONYMOUS_CODING CG5022 DOWNSTREAM CG34367	TF binding site mE1_TFBS_cad
3R	10784969	3R_10784969_DEL [dm3] 3R_14959247_DEL [dm6]	TTT	T	1.939e^-4	0.751	INTERGENIC
3R	11000450	3R_11000450_SNP [dm3] 3R_15174728_SNP [dm6]	T	C	1.942e^-4	0.751	DOWNSTREAM Mf INTRON Mf & 1 other
2R	13383613	2R_13383613_SNP [dm3] 2R_17496108_SNP [dm6]	G	T	1.942e^-4	0.751	DOWNSTREAM CG30103 INTERGENIC
2R	7539475	2R_7539475_SNP [dm3] 2R_11651970_SNP [dm6]	G	A	1.949e^-4	0.751	NON_SYNONYMOUS_CODING CG34228 UPSTREAM CG9003 & 1 other DOWNSTREAM tRNA:CR30254 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	5109712	2L_5109712_SNP [dm3] 2L_5109712_SNP [dm6]	G	T	1.950e^-4	0.751	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10271082	2R_10271082_SNP [dm3] 2R_14383577_SNP [dm6]	A	T	1.963e^-4	0.751	INTRON Dh44-R1
2R	10274140	2R_10274140_SNP [dm3] 2R_14386635_SNP [dm6]	T	C	1.963e^-4	0.751	INTERGENIC
2R	14475412	2R_14475412_SNP [dm3] 2R_18587907_SNP [dm6]	T	A	1.972e^-4	0.751	INTRON GEFmeso
2R	14061082	2R_14061082_SNP [dm3] 2R_18173577_SNP [dm6]	A	C	1.973e^-4	0.751	UPSTREAM Dgp-1 & 1 other DOWNSTREAM CR45315 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14061083	2R_14061083_SNP [dm3] 2R_18173578_SNP [dm6]	A	T	1.973e^-4	0.751	UPSTREAM Dgp-1 & 1 other DOWNSTREAM CR45315 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10785102	3R_10785102_DEL [dm3] 3R_14959380_DEL [dm6]	TGATC	A	1.978e^-4	0.751	INTERGENIC
X	18014551	X_18014551_SNP [dm3] X_18120518_SNP [dm6]	G	C	1.995e^-4	0.751	DOWNSTREAM CR45605 INTERGENIC
X	8164547	X_8164547_SNP [dm3] X_8270514_SNP [dm6]	G	A	1.997e^-4	0.751	SYNONYMOUS_CODING Corp INTRON CG1632	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	1877233	3L_1877233_SNP [dm3] 3L_1877233_SNP [dm6]	G	A	2.001e^-4	0.751	UPSTREAM dre4 INTRON CG13937	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	13099102	2L_13099102_SNP [dm3] 2L_13099102_SNP [dm6]	A	G	2.001e^-4	0.751	INTERGENIC
X	6911147	X_6911147_SNP [dm3] X_7017114_SNP [dm6]	G	C	2.002e^-4	0.751	INTERGENIC
3R	4535962	3R_4535962_SNP [dm3] 3R_8710240_SNP [dm6]	G	A	2.003e^-4	0.751	INTERGENIC	TF binding site mE1_TFBS_cad
X	16770414	X_16770414_SNP [dm3] X_16876381_SNP [dm6]	T	C	2.003e^-4	0.751	START_GAINED CG13003 UTR_5_PRIME CG13003
2R	20198156	2R_20198156_SNP [dm3] 2R_24310633_SNP [dm6]	G	A	2.007e^-4	0.751	INTRON betaTub60D	TF binding site mE1_TFBS_chinmo
3R	19036123	3R_19036123_SNP [dm3] 3R_23210401_SNP [dm6]	A	T	2.009e^-4	0.751	INTRON cnc	TF binding site mE1_TFBS_Trl
3L	19616117	3L_19616117_SNP [dm3] 3L_19623017_SNP [dm6]	G	T	2.009e^-4	0.751	NON_SYNONYMOUS_CODING ms_3_76Cc
2R	14225624	2R_14225624_SNP [dm3] 2R_18338119_SNP [dm6]	T	C	2.024e^-4	0.754	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13380698	2R_13380698_SNP [dm3] 2R_17493193_SNP [dm6]	T	C	2.025e^-4	0.754	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2L	9098857	2L_9098857_SNP [dm3] 2L_9098857_SNP [dm6]	C	T	2.039e^-4	0.755	UPSTREAM CR44482 DOWNSTREAM CG31609 INTERGENIC
3R	22582005	3R_22582005_SNP [dm3] 3R_26756283_SNP [dm6]	A	G	2.041e^-4	0.755	DOWNSTREAM CR45562 INTERGENIC
2L	22427385	2L_22427385_DEL [dm3] 2L_22534653_DEL [dm6]	ATACCGATTCAGTTCATTCC...	A	2.042e^-4	0.755	UTR_3_PRIME RpL5 DOWNSTREAM RpL5 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8835548	2L_8835548_SNP [dm3] 2L_8835548_SNP [dm6]	G	A	2.047e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	15205023	2R_15205023_SNP [dm3] 2R_19317518_SNP [dm6]	C	T	2.050e^-4	0.755	INTRON Rgk1
2L	904740	2L_904740_SNP [dm3] 2L_904740_SNP [dm6]	T	G	2.057e^-4	0.756	DOWNSTREAM CR45261 INTERGENIC
3R	17661098	3R_17661098_SNP [dm3] 3R_21835376_SNP [dm6]	T	C	2.060e^-4	0.756	INTERGENIC
2L	11181766	2L_11181766_SNP [dm3] 2L_11181766_SNP [dm6]	C	A	2.065e^-4	0.756	INTRON Ca-beta	TF binding site mE1_TFBS_cad
3L	2659255	3L_2659255_SNP [dm3] 3L_2659255_SNP [dm6]	C	G	2.074e^-4	0.757	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2659364	3L_2659364_DEL [dm3] 3L_2659364_DEL [dm6]	GCC	AA	2.074e^-4	0.757	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_chinmo
2R	20198159	2R_20198159_SNP [dm3] 2R_24310636_SNP [dm6]	T	G	2.084e^-4	0.759	INTRON betaTub60D	TF binding site mE1_TFBS_chinmo
3R	25264539	3R_25264539_SNP [dm3] 3R_29438817_SNP [dm6]	T	A	2.096e^-4	0.762	INTRON Ptp99A
3R	18637144	3R_18637144_SNP [dm3] 3R_22811422_SNP [dm6]	T	A	2.102e^-4	0.762	INTERGENIC
X	16757862	X_16757862_SNP [dm3] X_16863829_SNP [dm6]	T	G	2.110e^-4	0.762	INTRON CG13003
3L	20277252	3L_20277252_SNP [dm3] 3L_20284152_SNP [dm6]	A	G	2.110e^-4	0.762	INTRON gogo
2L	14461944	2L_14461944_SNP [dm3] 2L_14461944_SNP [dm6]	T	C	2.113e^-4	0.762	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10785139	3R_10785139_SNP [dm3] 3R_14959417_SNP [dm6]	A	T	2.127e^-4	0.765	INTERGENIC
3L	12896993	3L_12896993_SNP [dm3] 3L_12903893_SNP [dm6]	T	A	2.141e^-4	0.765	UPSTREAM CG32117 INTERGENIC
X	20799882	X_20799882_SNP [dm3] X_20928855_SNP [dm6]	G	A	2.149e^-4	0.765	INTERGENIC
2R	6393924	2R_6393924_SNP [dm3] 2R_10506419_SNP [dm6]	G	T	2.149e^-4	0.765	DOWNSTREAM lola INTRON lola
3R	17148819	3R_17148819_DEL [dm3] 3R_21323097_DEL [dm6]	AA	A	2.151e^-4	0.765	INTRON CG16791
2L	13204600	2L_13204600_SNP [dm3] 2L_13204600_SNP [dm6]	T	C	2.152e^-4	0.765	INTRON Pect	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	5109844	2L_5109844_SNP [dm3] 2L_5109844_SNP [dm6]	A	G	2.153e^-4	0.765	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22899207	3L_22899207_SNP [dm3] 3L_22906107_SNP [dm6]	T	C	2.155e^-4	0.765	DOWNSTREAM BoYb INTERGENIC	transposable element FlyBase
X	11023792	X_11023792_SNP [dm3] X_11129759_SNP [dm6]	T	G	2.163e^-4	0.766	UTR_3_PRIME Klp10A UPSTREAM Gtp-bp DOWNSTREAM Klp10A	regulatory region REDfly_CRMs
2L	14247404	2L_14247404_SNP [dm3] 2L_14247404_SNP [dm6]	C	T	2.165e^-4	0.766	INTERGENIC
3R	12704787	3R_12704787_SNP [dm3] 3R_16879065_SNP [dm6]	A	T	2.176e^-4	0.768	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	10785021	3R_10785021_SNP [dm3] 3R_14959299_SNP [dm6]	A	G	2.195e^-4	0.773	INTERGENIC
2L	8377243	2L_8377243_SNP [dm3] 2L_8377243_SNP [dm6]	A	G	2.201e^-4	0.773	SYNONYMOUS_CODING CG17294 UPSTREAM CG13390	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16770437	X_16770437_SNP [dm3] X_16876404_SNP [dm6]	T	A	2.203e^-4	0.773	UTR_5_PRIME CG13003
X	13474436	X_13474436_SNP [dm3] X_13580403_SNP [dm6]	T	C	2.210e^-4	0.774	INTRON Tango13
2R	14061188	2R_14061188_SNP [dm3] 2R_18173683_SNP [dm6]	T	C	2.214e^-4	0.774	UTR_5_PRIME CG10916 DOWNSTREAM CR45315	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb
X	13474422	X_13474422_DEL [dm3] X_13580389_DEL [dm6]	CCTTT	C	2.219e^-4	0.774	INTRON Tango13
3L	7738015	3L_7738015_SNP [dm3] 3L_7744915_SNP [dm6]	A	C	2.237e^-4	0.774	INTRON CG32373
3L	7738020	3L_7738020_SNP [dm3] 3L_7744920_SNP [dm6]	G	T	2.237e^-4	0.774	INTRON CG32373
2L	16935926	2L_16935926_SNP [dm3] 2L_16935926_SNP [dm6]	G	T	2.243e^-4	0.774	INTERGENIC
X	21308171	X_21308171_SNP [dm3] X_21437144_SNP [dm6]	A	G	2.246e^-4	0.774	INTRON CG42343	TF binding site BDTNP1_TFBS_dl
2L	4338861	2L_4338861_SNP [dm3] 2L_4338861_SNP [dm6]	T	C	2.246e^-4	0.774	UTR_5_PRIME Atet INTRON Atet	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	14475342	2R_14475342_SNP [dm3] 2R_18587837_SNP [dm6]	T	A	2.250e^-4	0.774	INTRON GEFmeso
3L	14291829	3L_14291829_SNP [dm3] 3L_14298729_SNP [dm6]	A	C	2.254e^-4	0.774	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	6045886	2L_6045886_SNP [dm3] 2L_6045886_SNP [dm6]	C	T	2.254e^-4	0.774	UPSTREAM ade2 & 1 other DOWNSTREAM slmo & 1 other INTRON ade2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13381158	2R_13381158_SNP [dm3] 2R_17493653_SNP [dm6]	G	T	2.255e^-4	0.774	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2L	12987459	2L_12987459_SNP [dm3] 2L_12987459_SNP [dm6]	C	T	2.259e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2635836	2L_2635836_SNP [dm3] 2L_2635836_SNP [dm6]	G	A	2.270e^-4	0.776	INTERGENIC
2R	10275647	2R_10275647_SNP [dm3] 2R_14388142_SNP [dm6]	T	A	2.276e^-4	0.776	INTERGENIC
3R	2917621	3R_2917621_SNP [dm3] 3R_7091899_SNP [dm6]	C	T	2.278e^-4	0.776	DOWNSTREAM CR43685 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12508429	3L_12508429_SNP [dm3] 3L_12515329_SNP [dm6]	T	C	2.291e^-4	0.779	UTR_5_PRIME tral UPSTREAM sti & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2L	11192164	2L_11192164_SNP [dm3] 2L_11192164_SNP [dm6]	A	G	2.300e^-4	0.781	INTRON Ca-beta
2R	14475360	2R_14475360_SNP [dm3] 2R_18587855_SNP [dm6]	T	G	2.305e^-4	0.781	INTRON GEFmeso
2L	2498298	2L_2498298_SNP [dm3] 2L_2498298_SNP [dm6]	C	T	2.313e^-4	0.781	UTR_3_PRIME oaf DOWNSTREAM oaf
3L	13058364	3L_13058364_SNP [dm3] 3L_13065264_SNP [dm6]	G	T	2.315e^-4	0.781	INTERGENIC
3L	11316831	3L_11316831_SNP [dm3] 3L_11323731_SNP [dm6]	G	A	2.316e^-4	0.781	DOWNSTREAM CR44723 EXON CR44721 & 1 other
3R	3935467	3R_3935467_SNP [dm3] 3R_8109745_SNP [dm6]	T	G	2.323e^-4	0.781	INTRON puc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14979468	2R_14979468_SNP [dm3] 2R_19091963_SNP [dm6]	T	C	2.325e^-4	0.781	INTRON 5-HT1A
X	11024053	X_11024053_SNP [dm3] X_11130020_SNP [dm6]	C	T	2.364e^-4	0.791	UTR_3_PRIME Klp10A UPSTREAM Gtp-bp DOWNSTREAM Klp10A	regulatory region REDfly_CRMs
2L	15033071	2L_15033071_SNP [dm3] 2L_15033071_SNP [dm6]	G	A	2.369e^-4	0.791	UTR_3_PRIME GABA-B-R1
2L	8398762	2L_8398762_INS [dm3] 2L_8398762_INS [dm6]	T	TA	2.382e^-4	0.791	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
2R	16440109	2R_16440109_SNP [dm3] 2R_20552604_SNP [dm6]	C	T	2.383e^-4	0.791	UPSTREAM CG13430 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10271919	2R_10271919_DEL [dm3] 2R_14384414_DEL [dm6]	TTATATAGGAAACAACT...	T	2.386e^-4	0.791	INTRON Dh44-R1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	3985693	X_3985693_SNP [dm3] X_4091660_SNP [dm6]	G	A	2.394e^-4	0.791	UTR_3_PRIME CG43689 DOWNSTREAM CG43689
2R	13380673	2R_13380673_SNP [dm3] 2R_17493168_SNP [dm6]	G	A	2.396e^-4	0.791	UTR_3_PRIME NT5E-2 UPSTREAM CG30103	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	13380674	2R_13380674_SNP [dm3] 2R_17493169_SNP [dm6]	T	A	2.396e^-4	0.791	UTR_3_PRIME NT5E-2 UPSTREAM CG30103	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3R	5913843	3R_5913843_SNP [dm3] 3R_10088121_SNP [dm6]	G	C	2.399e^-4	0.791	INTRON CR45054	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	20851748	3R_20851748_SNP [dm3] 3R_25026026_SNP [dm6]	G	A	2.400e^-4	0.791	SYNONYMOUS_CODING Hr96	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2L	14447249	2L_14447249_SNP [dm3] 2L_14447249_SNP [dm6]	C	T	2.403e^-4	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4580409	2L_4580409_SNP [dm3] 2L_4580409_SNP [dm6]	A	G	2.408e^-4	0.791	INTRON dp
3L	9646792	3L_9646792_SNP [dm3] 3L_9653692_SNP [dm6]	T	C	2.409e^-4	0.791	INTRON fry & 1 other
3R	6901922	3R_6901922_SNP [dm3] 3R_11076200_SNP [dm6]	A	G	2.417e^-4	0.792	INTERGENIC
2R	14709468	2R_14709468_DEL [dm3] 2R_18821963_DEL [dm6]	CC	C	2.426e^-4	0.792	DOWNSTREAM CG15097 & 1 other INTRON Phb2	TF binding site mE1_TFBS_cad
2L	11184069	2L_11184069_SNP [dm3] 2L_11184069_SNP [dm6]	A	T	2.428e^-4	0.792	INTRON Ca-beta
2R	13257000	2R_13257000_SNP [dm3] 2R_17369495_SNP [dm6]	T	A	2.438e^-4	0.793	INTRON mbl
2L	7003228	2L_7003228_SNP [dm3] 2L_7003228_SNP [dm6]	A	G	2.439e^-4	0.793	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13310987	3L_13310987_SNP [dm3] 3L_13317887_SNP [dm6]	G	A	2.446e^-4	0.794	INTERGENIC
2R	10271942	2R_10271942_SNP [dm3] 2R_14384437_SNP [dm6]	T	G	2.467e^-4	0.799	INTRON Dh44-R1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10194230	3L_10194230_SNP [dm3] 3L_10201130_SNP [dm6]	A	C	2.486e^-4	0.804	INTRON ect
2L	7193313	2L_7193313_SNP [dm3] 2L_7193313_SNP [dm6]	G	T	2.499e^-4	0.806	SYNONYMOUS_CODING CG4497
2R	13381114	2R_13381114_SNP [dm3] 2R_17493609_SNP [dm6]	A	T	2.504e^-4	0.806	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3L	9609172	3L_9609172_SNP [dm3] 3L_9616072_SNP [dm6]	G	A	2.504e^-4	0.806	UTR_5_PRIME LanB2 INTRON LanB2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	20799653	X_20799653_SNP [dm3] X_20928626_SNP [dm6]	G	A	2.512e^-4	0.806	INTERGENIC
X	15358598	X_15358598_SNP [dm3] X_15464565_SNP [dm6]	T	C	2.514e^-4	0.806	UTR_3_PRIME CG6294 UPSTREAM CG6299 INTRON CG6299 & 1 other	TF binding site mE1_TFBS_chinmo
2L	10136460	2L_10136460_SNP [dm3] 2L_10136460_SNP [dm6]	G	A	2.525e^-4	0.809	INTRON CG44153
2L	8372849	2L_8372849_SNP [dm3] 2L_8372849_SNP [dm6]	T	A	2.532e^-4	0.809	INTRON CG17292	TF binding site mE1_TFBS_HSA
2R	19248973	2R_19248973_SNP [dm3] 2R_23361450_SNP [dm6]	C	T	2.550e^-4	0.811	SYNONYMOUS_CODING vir	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2553451	2L_2553451_SNP [dm3] 2L_2553451_SNP [dm6]	G	A	2.555e^-4	0.811	UPSTREAM CG3515 INTERGENIC
2L	2553452	2L_2553452_SNP [dm3] 2L_2553452_SNP [dm6]	T	A	2.555e^-4	0.811	UPSTREAM CG3515 INTERGENIC
3L	15582582	3L_15582582_SNP [dm3] 3L_15589482_SNP [dm6]	C	G	2.557e^-4	0.811	UTR_5_PRIME RhoGAP71E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5801867	2R_5801867_SNP [dm3] 2R_9914362_SNP [dm6]	G	A	2.560e^-4	0.811	UTR_3_PRIME Mef2 DOWNSTREAM Etf-QO
2L	9425970	2L_9425970_SNP [dm3] 2L_9425970_SNP [dm6]	C	T	2.581e^-4	0.814	NON_SYNONYMOUS_CODING Mco1 UPSTREAM Fbp2
3L	3695292	3L_3695292_SNP [dm3] 3L_3695292_SNP [dm6]	C	T	2.583e^-4	0.814	INTERGENIC
3L	10456560	3L_10456560_SNP [dm3] 3L_10463460_SNP [dm6]	A	G	2.585e^-4	0.814	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	6340225	2R_6340225_SNP [dm3] 2R_10452720_SNP [dm6]	C	A	2.589e^-4	0.814	UPSTREAM Cyp49a1 INTRON Galphao & 1 other
3R	10810458	3R_10810458_SNP [dm3] 3R_14984736_SNP [dm6]	C	T	2.592e^-4	0.814	INTERGENIC
3L	9368564	3L_9368564_SNP [dm3] 3L_9375464_SNP [dm6]	T	A	2.595e^-4	0.814	UTR_5_PRIME CG4461 DOWNSTREAM Hsp22 & 2 others	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2130675	3L_2130675_SNP [dm3] 3L_2130675_SNP [dm6]	G	A	2.603e^-4	0.815	INTRON zormin	TF binding site mE1_TFBS_cad
2L	683477	2L_683477_SNP [dm3] 2L_683477_SNP [dm6]	A	T	2.613e^-4	0.817	INTRON ds
3R	4056534	3R_4056534_SNP [dm3] 3R_8230812_SNP [dm6]	C	T	2.617e^-4	0.817	EXON CR45551
2R	17351007	2R_17351007_SNP [dm3] 2R_21463502_SNP [dm6]	A	G	2.627e^-4	0.817	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8380960	3R_8380960_SNP [dm3] 3R_12555238_SNP [dm6]	A	G	2.628e^-4	0.817	INTRON Octbeta2R
2L	9491076	2L_9491076_SNP [dm3] 2L_9491076_SNP [dm6]	A	C	2.630e^-4	0.817	DOWNSTREAM Gdi INTERGENIC
3L	12947040	3L_12947040_SNP [dm3] 3L_12953940_SNP [dm6]	G	C	2.645e^-4	0.818	NON_SYNONYMOUS_CODING CG10752
2L	1467056	2L_1467056_SNP [dm3] 2L_1467056_SNP [dm6]	A	G	2.650e^-4	0.818	INTERGENIC
2L	1009050	2L_1009050_SNP [dm3] 2L_1009050_SNP [dm6]	A	G	2.655e^-4	0.818	UTR_3_PRIME IA-2
2L	1009053	2L_1009053_SNP [dm3] 2L_1009053_SNP [dm6]	A	G	2.655e^-4	0.818	UTR_3_PRIME IA-2
X	5214674	X_5214674_SNP [dm3] X_5320641_SNP [dm6]	C	T	2.655e^-4	0.818	SYNONYMOUS_CODING Rnp4F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1345084	3L_1345084_SNP [dm3] 3L_1345084_SNP [dm6]	C	T	2.660e^-4	0.818	SYNONYMOUS_CODING Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10784944	3R_10784944_SNP [dm3] 3R_14959222_SNP [dm6]	A	C	2.678e^-4	0.822	INTERGENIC
2L	15508244	2L_15508244_SNP [dm3] 2L_15508244_SNP [dm6]	G	A	2.685e^-4	0.822	INTERGENIC
2L	15508267	2L_15508267_SNP [dm3] 2L_15508267_SNP [dm6]	T	C	2.685e^-4	0.822	INTERGENIC
3L	6982751	3L_6982751_SNP [dm3] 3L_6989651_SNP [dm6]	A	G	2.702e^-4	0.823	UPSTREAM bin INTERGENIC	TF binding site mE1_TFBS_bab1
3L	6982752	3L_6982752_SNP [dm3] 3L_6989652_SNP [dm6]	C	G	2.702e^-4	0.823	UPSTREAM bin INTERGENIC	TF binding site mE1_TFBS_bab1
2R	14475427	2R_14475427_SNP [dm3] 2R_18587922_SNP [dm6]	A	C	2.707e^-4	0.823	INTRON GEFmeso
2L	15508219	2L_15508219_SNP [dm3] 2L_15508219_SNP [dm6]	T	C	2.720e^-4	0.823	INTERGENIC
2L	2752116	2L_2752116_SNP [dm3] 2L_2752116_SNP [dm6]	C	A	2.723e^-4	0.823	UPSTREAM Bacc INTRON Pgk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
X	15086279	X_15086279_SNP [dm3] X_15192246_SNP [dm6]	T	A	2.725e^-4	0.823	INTERGENIC
X	20799700	X_20799700_SNP [dm3] X_20928673_SNP [dm6]	T	A	2.733e^-4	0.823	INTERGENIC
X	14553524	X_14553524_SNP [dm3] X_14659491_SNP [dm6]	G	A	2.740e^-4	0.823	INTERGENIC
3R	8576854	3R_8576854_SNP [dm3] 3R_12751132_SNP [dm6]	A	G	2.756e^-4	0.823	INTRON beat-Vc
3R	16641949	3R_16641949_SNP [dm3] 3R_20816227_SNP [dm6]	G	A	2.758e^-4	0.823	UPSTREAM Fancd2 DOWNSTREAM CG17270 INTERGENIC	TF binding site mE1_TFBS_jumu
2L	8373684	2L_8373684_SNP [dm3] 2L_8373684_SNP [dm6]	A	C	2.763e^-4	0.823	SYNONYMOUS_CODING CG17292 UPSTREAM Wdr82	TF binding site mE1_TFBS_HSA
2L	8398789	2L_8398789_SNP [dm3] 2L_8398789_SNP [dm6]	A	T	2.766e^-4	0.823	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
2L	8398798	2L_8398798_SNP [dm3] 2L_8398798_SNP [dm6]	A	G	2.766e^-4	0.823	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
2L	8398803	2L_8398803_SNP [dm3] 2L_8398803_SNP [dm6]	C	A	2.766e^-4	0.823	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
2L	8398815	2L_8398815_SNP [dm3] 2L_8398815_SNP [dm6]	G	C	2.766e^-4	0.823	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
3L	14371968	3L_14371968_SNP [dm3] 3L_14378868_SNP [dm6]	T	C	2.777e^-4	0.823	INTERGENIC
3R	16904967	3R_16904967_SNP [dm3] 3R_21079245_SNP [dm6]	G	A	2.779e^-4	0.823	INTRON HHEX
2R	13382622	2R_13382622_SNP [dm3] 2R_17495117_SNP [dm6]	G	C	2.790e^-4	0.823	SYNONYMOUS_CODING CG30103	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14057272	2L_14057272_DEL [dm3] 2L_14057272_DEL [dm6]	TT	T	2.791e^-4	0.823	INTRON nAChRalpha5
3L	6349009	3L_6349009_SNP [dm3] 3L_6355909_SNP [dm6]	A	C	2.797e^-4	0.823	INTERGENIC
3R	16998241	3R_16998241_SNP [dm3] 3R_21172519_SNP [dm6]	C	G	2.801e^-4	0.823	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10267370	2R_10267370_SNP [dm3] 2R_14379865_SNP [dm6]	A	T	2.813e^-4	0.823	INTRON Dh44-R1
2L	6045890	2L_6045890_SNP [dm3] 2L_6045890_SNP [dm6]	A	G	2.815e^-4	0.823	UPSTREAM ade2 & 1 other DOWNSTREAM slmo & 1 other INTRON ade2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11592185	2L_11592185_SNP [dm3] 2L_11592185_SNP [dm6]	G	T	2.819e^-4	0.823	UPSTREAM Acp33A INTRON kek2	TF binding site mE1_TFBS_inv
2L	8742387	2L_8742387_SNP [dm3] 2L_8742387_SNP [dm6]	C	A	2.822e^-4	0.823	INTERGENIC
3L	8237797	3L_8237797_DEL [dm3] 3L_8244697_DEL [dm6]	ATGCCAGGGAAA...	A	2.826e^-4	0.823	INTRON Dscam4
X	6178554	X_6178554_SNP [dm3] X_6284521_SNP [dm6]	G	A	2.826e^-4	0.823	UTR_3_PRIME Top3beta UPSTREAM CG11700
3L	1877638	3L_1877638_SNP [dm3] 3L_1877638_SNP [dm6]	T	G	2.830e^-4	0.823	SYNONYMOUS_CODING CG13937
2L	13691200	2L_13691200_SNP [dm3] 2L_13691200_SNP [dm6]	T	G	2.833e^-4	0.823	INTRON CG31814
X	6443042	X_6443042_SNP [dm3] X_6549009_SNP [dm6]	C	A	2.835e^-4	0.823	INTRON CG34417
X	21862056	X_21862056_SNP [dm3] X_22460220_SNP [dm6]	G	A	2.836e^-4	0.823	INTRON CG14619
X	10932677	X_10932677_SNP [dm3] X_11038644_SNP [dm6]	T	C	2.838e^-4	0.823	UPSTREAM CG42339 INTRON CG42339
X	18294239	X_18294239_SNP [dm3] X_18400206_SNP [dm6]	A	G	2.838e^-4	0.823	UPSTREAM CG34328 INTRON CG32549
2L	15400253	2L_15400253_SNP [dm3] 2L_15400253_SNP [dm6]	G	A	2.844e^-4	0.823	UPSTREAM CR44860 EXON CR45374
2L	8000295	2L_8000295_SNP [dm3] 2L_8000295_SNP [dm6]	A	G	2.845e^-4	0.823	DOWNSTREAM Sirup INTRON Wwox	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3888073	2R_3888073_DEL [dm3] 2R_8000568_DEL [dm6]	GG	G	2.854e^-4	0.825	UTR_3_PRIME CG11191 DOWNSTREAM CG11191	TF binding site mE1_TFBS_chinmo
3L	12955778	3L_12955778_SNP [dm3] 3L_12962678_SNP [dm6]	G	A	2.864e^-4	0.826	INTERGENIC
3L	10260421	3L_10260421_INS [dm3] 3L_10267321_INS [dm6]	A	AT	2.868e^-4	0.826	UPSTREAM can INTERGENIC	regulatory region REDfly_CRMs
2L	8399403	2L_8399403_SNP [dm3] 2L_8399403_SNP [dm6]	T	C	2.875e^-4	0.827	INTRON CG13386
3L	1903351	3L_1903351_SNP [dm3] 3L_1903351_SNP [dm6]	A	G	2.880e^-4	0.827	INTRON CG1887
X	6688885	X_6688885_SNP [dm3] X_6794852_SNP [dm6]	C	T	2.885e^-4	0.827	INTRON C3G	TF binding site mE1_TFBS_Kr
X	9407589	X_9407589_SNP [dm3] X_9513556_SNP [dm6]	C	A	2.893e^-4	0.827	INTRON CG32700
X	4914313	X_4914313_SNP [dm3] X_5020280_SNP [dm6]	A	C	2.902e^-4	0.827	INTRON CR44833	regulatory region REDfly_CRMs
3R	18044067	3R_18044067_SNP [dm3] 3R_22218345_SNP [dm6]	C	A	2.904e^-4	0.827	DOWNSTREAM Gld2 INTRON SKIP
2R	10790949	2R_10790949_SNP [dm3] 2R_14903444_SNP [dm6]	C	A	2.905e^-4	0.827	NON_SYNONYMOUS_CODING CG10249 DOWNSTREAM Cyp317a1
3L	12569577	3L_12569577_SNP [dm3] 3L_12576477_SNP [dm6]	G	A	2.911e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
2L	9043154	2L_9043154_SNP [dm3] 2L_9043154_SNP [dm6]	A	G	2.912e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13311039	3L_13311039_SNP [dm3] 3L_13317939_SNP [dm6]	A	T	2.921e^-4	0.828	INTERGENIC
3L	13310996	3L_13310996_DEL [dm3] 3L_13317896_DEL [dm6]	GTTTAAAG	T	2.927e^-4	0.828	INTERGENIC
2L	1747500	2L_1747500_SNP [dm3] 2L_1747500_SNP [dm6]	A	C	2.939e^-4	0.828	INTRON CG17646	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7737983	3L_7737983_SNP [dm3] 3L_7744883_SNP [dm6]	A	T	2.944e^-4	0.828	INTRON CG32373
3L	2710978	3L_2710978_SNP [dm3] 3L_2710978_SNP [dm6]	T	C	2.950e^-4	0.828	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20794666	2L_20794666_SNP [dm3] 2L_20794666_SNP [dm6]	A	T	2.953e^-4	0.828	UPSTREAM CR44146 & 1 other INTRON vari
2L	4073253	2L_4073253_SNP [dm3] 2L_4073253_SNP [dm6]	C	G	2.955e^-4	0.828	INTRON ed
X	7139663	X_7139663_SNP [dm3] X_7245630_SNP [dm6]	A	T	2.958e^-4	0.828	INTRON CR44357	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7139667	X_7139667_SNP [dm3] X_7245634_SNP [dm6]	G	A	2.958e^-4	0.828	INTRON CR44357	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9552808	3R_9552808_SNP [dm3] 3R_13727086_SNP [dm6]	T	A	2.960e^-4	0.828	INTRON CG34383
2L	14050935	2L_14050935_SNP [dm3] 2L_14050935_SNP [dm6]	A	T	2.979e^-4	0.829	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4442768	3R_4442768_SNP [dm3] 3R_8617046_SNP [dm6]	C	T	2.981e^-4	0.829	INTRON 5-HT2B	TF binding site mE1_TFBS_inv
2L	4351154	2L_4351154_SNP [dm3] 2L_4351154_SNP [dm6]	C	A	2.982e^-4	0.829	EXON CR44700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10588750	2R_10588750_SNP [dm3] 2R_14701245_SNP [dm6]	A	T	2.985e^-4	0.829	INTRON mspo
3L	1874268	3L_1874268_SNP [dm3] 3L_1874268_SNP [dm6]	C	T	2.987e^-4	0.829	SYNONYMOUS_CODING dre4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10123786	3L_10123786_SNP [dm3] 3L_10130686_SNP [dm6]	A	T	2.991e^-4	0.829	INTRON dpr6
2L	3755318	2L_3755318_SNP [dm3] 2L_3755318_SNP [dm6]	G	A	3.002e^-4	0.829	DOWNSTREAM CG10019 INTERGENIC
2R	3882539	2R_3882539_SNP [dm3] 2R_7995034_SNP [dm6]	T	A	3.002e^-4	0.829	UPSTREAM Dic3 DOWNSTREAM Hey INTERGENIC	TF binding site mE1_TFBS_cad
3L	12269967	3L_12269967_SNP [dm3] 3L_12276867_SNP [dm6]	T	C	3.010e^-4	0.829	UPSTREAM CG10426 INTRON CG4300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	14475419	2R_14475419_SNP [dm3] 2R_18587914_SNP [dm6]	G	A	3.012e^-4	0.829	INTRON GEFmeso
3R	26118026	3R_26118026_SNP [dm3] 3R_30292304_SNP [dm6]	C	A	3.015e^-4	0.829	INTRON hdc
3R	20873151	3R_20873151_SNP [dm3] 3R_25047429_SNP [dm6]	A	T	3.019e^-4	0.829	UPSTREAM CG11790 DOWNSTREAM CG11786 INTERGENIC
3L	16663202	3L_16663202_SNP [dm3] 3L_16670102_SNP [dm6]	A	G	3.024e^-4	0.829	DOWNSTREAM CR45241 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16663211	3L_16663211_SNP [dm3] 3L_16670111_SNP [dm6]	T	A	3.024e^-4	0.829	DOWNSTREAM CR45241 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12072243	3R_12072243_SNP [dm3] 3R_16246521_SNP [dm6]	C	A	3.036e^-4	0.829	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
2L	2724578	2L_2724578_SNP [dm3] 2L_2724578_SNP [dm6]	T	G	3.036e^-4	0.829	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	13256993	2R_13256993_DEL [dm3] 2R_17369488_DEL [dm6]	ACA	A	3.051e^-4	0.829	INTRON mbl
3L	3745212	3L_3745212_SNP [dm3] 3L_3745212_SNP [dm6]	C	T	3.051e^-4	0.829	INTRON CG32264
3R	18036508	3R_18036508_SNP [dm3] 3R_22210786_SNP [dm6]	A	G	3.061e^-4	0.829	INTRON SKIP
2L	16449778	2L_16449778_SNP [dm3] 2L_16449778_SNP [dm6]	T	G	3.069e^-4	0.829	INTRON Idgf2
3R	11324566	3R_11324566_SNP [dm3] 3R_15498844_SNP [dm6]	C	A	3.070e^-4	0.829	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2025896	2L_2025896_SNP [dm3] 2L_2025896_SNP [dm6]	G	A	3.072e^-4	0.829	INTRON CG4238
3R	10784993	3R_10784993_SNP [dm3] 3R_14959271_SNP [dm6]	C	T	3.074e^-4	0.829	INTERGENIC
3R	10784995	3R_10784995_SNP [dm3] 3R_14959273_SNP [dm6]	T	A	3.074e^-4	0.829	INTERGENIC
3R	10784996	3R_10784996_SNP [dm3] 3R_14959274_SNP [dm6]	T	A	3.074e^-4	0.829	INTERGENIC
X	9118120	X_9118120_SNP [dm3] X_9224087_SNP [dm6]	G	A	3.084e^-4	0.83	UPSTREAM t INTERGENIC
2R	1686074	2R_1686074_SNP [dm3] 2R_5798569_SNP [dm6]	C	T	3.092e^-4	0.831	UPSTREAM Or42b INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11477810	3L_11477810_SNP [dm3] 3L_11484710_SNP [dm6]	G	C	3.108e^-4	0.834	INTERGENIC
2L	22445075	2L_22445075_SNP [dm3] 2L_22552343_SNP [dm6]	T	G	3.123e^-4	0.835	UTR_3_PRIME CG17493 DOWNSTREAM CG17493
2R	14475354	2R_14475354_SNP [dm3] 2R_18587849_SNP [dm6]	T	C	3.133e^-4	0.835	INTRON GEFmeso
2R	17002624	2R_17002624_DEL [dm3] 2R_21115119_DEL [dm6]	GCCAGG	G	3.140e^-4	0.835	INTRON ktub
2L	2644323	2L_2644323_SNP [dm3] 2L_2644323_SNP [dm6]	T	C	3.143e^-4	0.835	INTERGENIC
2L	1732302	2L_1732302_SNP [dm3] 2L_1732302_SNP [dm6]	A	G	3.144e^-4	0.835	UTR_5_PRIME CG17652 UPSTREAM CG17646	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	12456228	2R_12456228_SNP [dm3] 2R_16568723_SNP [dm6]	T	C	3.145e^-4	0.835	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
3R	14370557	3R_14370557_SNP [dm3] 3R_18544835_SNP [dm6]	A	T	3.155e^-4	0.835	INTRON fru
2L	8744246	2L_8744246_DEL [dm3] 2L_8744246_DEL [dm6]	ATAA	A	3.166e^-4	0.835	INTERGENIC
2R	13381095	2R_13381095_SNP [dm3] 2R_17493590_SNP [dm6]	T	A	3.167e^-4	0.835	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3R	11464539	3R_11464539_SNP [dm3] 3R_15638817_SNP [dm6]	C	A	3.167e^-4	0.835	DOWNSTREAM CG43336 INTERGENIC
2L	8398727	2L_8398727_SNP [dm3] 2L_8398727_SNP [dm6]	T	C	3.172e^-4	0.835	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
X	18293137	X_18293137_SNP [dm3] X_18399104_SNP [dm6]	T	A	3.172e^-4	0.835	DOWNSTREAM CG34328 INTRON CG32549	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	18293357	X_18293357_SNP [dm3] X_18399324_SNP [dm6]	A	G	3.172e^-4	0.835	DOWNSTREAM CG34328 INTRON CG32549	TF binding site BDTNP1_TFBS_sna
3L	1881744	3L_1881744_SNP [dm3] 3L_1881744_SNP [dm6]	C	A	3.175e^-4	0.835	INTRON CG13937
3L	8909547	3L_8909547_SNP [dm3] 3L_8916447_SNP [dm6]	G	A	3.181e^-4	0.836	DOWNSTREAM CR43970 INTRON Tsp66E
3L	3763169	3L_3763169_SNP [dm3] 3L_3763169_SNP [dm6]	A	G	3.184e^-4	0.836	INTRON CG32264	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	6534635	X_6534635_SNP [dm3] X_6640602_SNP [dm6]	C	G	3.205e^-4	0.838	INTRON pigs
2R	13381080	2R_13381080_SNP [dm3] 2R_17493575_SNP [dm6]	A	T	3.205e^-4	0.838	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3R	16642109	3R_16642109_SNP [dm3] 3R_20816387_SNP [dm6]	A	T	3.212e^-4	0.838	UPSTREAM Fancd2 DOWNSTREAM CG17270 INTERGENIC
3R	26133797	3R_26133797_SNP [dm3] 3R_30308075_SNP [dm6]	C	T	3.212e^-4	0.838	INTRON hdc
3L	5798371	3L_5798371_SNP [dm3] 3L_5805271_SNP [dm6]	C	T	3.226e^-4	0.84	SYNONYMOUS_CODING CG42272 INTRON S6k	TF binding site mE1_TFBS_cad
3L	12288778	3L_12288778_SNP [dm3] 3L_12295678_SNP [dm6]	G	C	3.227e^-4	0.84	INTRON CG4328
3L	11306170	3L_11306170_SNP [dm3] 3L_11313070_SNP [dm6]	G	T	3.235e^-4	0.84	SYNONYMOUS_CODING CG7573	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10125195	3L_10125195_SNP [dm3] 3L_10132095_SNP [dm6]	C	T	3.238e^-4	0.84	INTRON dpr6
2R	1580818	2R_1580818_INS [dm3] 2R_5693313_INS [dm6]	A	AA	3.252e^-4	0.841	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3L	13310988	3L_13310988_SNP [dm3] 3L_13317888_SNP [dm6]	T	G	3.253e^-4	0.841	INTERGENIC
3L	12509202	3L_12509202_SNP [dm3] 3L_12516102_SNP [dm6]	T	C	3.259e^-4	0.841	INTRON tral	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	3594373	3L_3594373_SNP [dm3] 3L_3594373_SNP [dm6]	C	T	3.268e^-4	0.841	DOWNSTREAM snRNA:U7 INTRON Eip63E	TF binding site mE1_TFBS_HSA
2R	13381093	2R_13381093_SNP [dm3] 2R_17493588_SNP [dm6]	C	A	3.273e^-4	0.841	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3R	21338369	3R_21338369_SNP [dm3] 3R_25512647_SNP [dm6]	C	T	3.275e^-4	0.841	INTERGENIC	TF binding site mE1_TFBS_cad
2L	1586379	2L_1586379_SNP [dm3] 2L_1586379_SNP [dm6]	C	A	3.276e^-4	0.841	SYNONYMOUS_CODING CG10869 INTRON haf	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	9609343	3L_9609343_SNP [dm3] 3L_9616243_SNP [dm6]	G	T	3.281e^-4	0.841	INTRON LanB2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7913008	2L_7913008_SNP [dm3] 2L_7913008_SNP [dm6]	A	T	3.287e^-4	0.841	INTRON Snoo
2R	20481771	2R_20481771_SNP [dm3] 2R_24594248_SNP [dm6]	A	G	3.301e^-4	0.841	INTRON pio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4752668	2R_4752668_SNP [dm3] 2R_8865163_SNP [dm6]	G	T	3.303e^-4	0.841	INTRON RyR
3L	12896570	3L_12896570_SNP [dm3] 3L_12903470_SNP [dm6]	T	A	3.310e^-4	0.841	NON_SYNONYMOUS_CODING CG32117 UPSTREAM CG12520
2R	7130028	2R_7130028_SNP [dm3] 2R_11242523_SNP [dm6]	T	C	3.319e^-4	0.841	UPSTREAM Listericin INTERGENIC
3R	17137907	3R_17137907_SNP [dm3] 3R_21312185_SNP [dm6]	G	A	3.320e^-4	0.841	EXON Hsromega
2R	12493303	2R_12493303_SNP [dm3] 2R_16605798_SNP [dm6]	G	A	3.325e^-4	0.841	INTERGENIC
2L	12551073	2L_12551073_SNP [dm3] 2L_12551073_SNP [dm6]	T	G	3.332e^-4	0.841	INTERGENIC
3R	15189733	3R_15189733_SNP [dm3] 3R_19364011_SNP [dm6]	G	A	3.332e^-4	0.841	INTERGENIC
3L	6208931	3L_6208931_SNP [dm3] 3L_6215831_SNP [dm6]	T	G	3.336e^-4	0.841	INTRON LanA	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe
3L	1877602	3L_1877602_SNP [dm3] 3L_1877602_SNP [dm6]	A	G	3.341e^-4	0.841	SYNONYMOUS_CODING CG13937
3L	16949891	3L_16949891_SNP [dm3] 3L_16956791_SNP [dm6]	T	C	3.349e^-4	0.841	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl
3L	9247360	3L_9247360_SNP [dm3] 3L_9254260_SNP [dm6]	G	T	3.365e^-4	0.841	INTRON GluRIB
2L	11700685	2L_11700685_SNP [dm3] 2L_11700685_SNP [dm6]	A	G	3.366e^-4	0.841	INTERGENIC
2R	18450250	2R_18450250_SNP [dm3] 2R_22562745_SNP [dm6]	T	G	3.372e^-4	0.841	NON_SYNONYMOUS_CODING CG11362 UPSTREAM px DOWNSTREAM dnr1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15400331	2L_15400331_SNP [dm3] 2L_15400331_SNP [dm6]	C	G	3.379e^-4	0.841	UPSTREAM CR44860 EXON CR45374
2R	8448392	2R_8448392_SNP [dm3] 2R_12560887_SNP [dm6]	C	A	3.388e^-4	0.841	SYNONYMOUS_CODING fra	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14558309	2R_14558309_SNP [dm3] 2R_18670804_SNP [dm6]	C	A	3.400e^-4	0.841	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	21725536	2L_21725536_SNP [dm3] 2L_21725536_SNP [dm6]	A	G	3.403e^-4	0.841	INTRON CG31619	transposable element FlyBase
2R	13383618	2R_13383618_SNP [dm3] 2R_17496113_SNP [dm6]	G	T	3.404e^-4	0.841	DOWNSTREAM CG30103 INTERGENIC
2L	4187058	2L_4187058_SNP [dm3] 2L_4187058_SNP [dm6]	C	T	3.406e^-4	0.841	SYNONYMOUS_CODING CG31961 DOWNSTREAM CR44057	TF binding site mE1_TFBS_sens
3L	2559730	3L_2559730_SNP [dm3] 3L_2559730_SNP [dm6]	C	T	3.407e^-4	0.841	INTRON msn
2L	2448934	2L_2448934_SNP [dm3] 2L_2448934_SNP [dm6]	C	T	3.413e^-4	0.841	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	1024651	2L_1024651_SNP [dm3] 2L_1024651_SNP [dm6]	G	T	3.414e^-4	0.841	INTRON IA-2
3R	13835421	3R_13835421_SNP [dm3] 3R_18009699_SNP [dm6]	G	T	3.417e^-4	0.841	INTRON cpo
3L	4722391	3L_4722391_SNP [dm3] 3L_4722391_SNP [dm6]	C	T	3.423e^-4	0.841	INTRON RhoGEF64C
X	4914290	X_4914290_SNP [dm3] X_5020257_SNP [dm6]	A	G	3.423e^-4	0.841	INTRON CR44833	regulatory region REDfly_CRMs
2L	7116086	2L_7116086_SNP [dm3] 2L_7116086_SNP [dm6]	T	C	3.439e^-4	0.841	INTRON Pvf3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10785029	3R_10785029_SNP [dm3] 3R_14959307_SNP [dm6]	A	T	3.446e^-4	0.841	INTERGENIC
3R	10785038	3R_10785038_DEL [dm3] 3R_14959316_DEL [dm6]	ATT	G	3.446e^-4	0.841	INTERGENIC
3L	8697792	3L_8697792_SNP [dm3] 3L_8704692_SNP [dm6]	G	T	3.456e^-4	0.841	INTERGENIC	TF binding site mE1_TFBS_cad
3L	8697940	3L_8697940_SNP [dm3] 3L_8704840_SNP [dm6]	A	G	3.456e^-4	0.841	INTERGENIC	TF binding site mE1_TFBS_cad
3R	7804864	3R_7804864_SNP [dm3] 3R_11979142_SNP [dm6]	T	C	3.456e^-4	0.841	SPLICE_SITE_REGION CG18547 UPSTREAM CR44135 INTRON CG18547	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	7130378	3L_7130378_SNP [dm3] 3L_7137278_SNP [dm6]	A	G	3.460e^-4	0.841	INTRON melt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
X	3483183	X_3483183_SNP [dm3] X_3589150_SNP [dm6]	G	A	3.479e^-4	0.841	INTRON AstA-R1
3R	16998278	3R_16998278_SNP [dm3] 3R_21172556_SNP [dm6]	A	G	3.483e^-4	0.841	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20908467	X_20908467_DEL [dm3] X_21037440_DEL [dm6]	CACTTA	C	3.483e^-4	0.841	INTRON Ntf-2
2L	9527191	2L_9527191_DEL [dm3] 2L_9527191_DEL [dm6]	TCCTTGGCTT	T	3.486e^-4	0.841	INTRON Oatp30B
2L	9527205	2L_9527205_SNP [dm3] 2L_9527205_SNP [dm6]	T	A	3.486e^-4	0.841	INTRON Oatp30B
3R	24329223	3R_24329223_SNP [dm3] 3R_28503501_SNP [dm6]	G	T	3.488e^-4	0.841	SPLICE_SITE_REGION Dhc98D INTRON Dhc98D	TF binding site mE1_TFBS_cad
3R	24329225	3R_24329225_SNP [dm3] 3R_28503503_SNP [dm6]	A	G	3.488e^-4	0.841	SPLICE_SITE_REGION Dhc98D INTRON Dhc98D	TF binding site mE1_TFBS_cad
2R	1584899	2R_1584899_SNP [dm3] 2R_5697394_SNP [dm6]	A	T	3.491e^-4	0.841	UPSTREAM CG17337 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	2553493	2L_2553493_SNP [dm3] 2L_2553493_SNP [dm6]	T	A	3.499e^-4	0.841	UPSTREAM CG3515 INTERGENIC
3L	5123864	3L_5123864_SNP [dm3] 3L_5130764_SNP [dm6]	A	G	3.501e^-4	0.841	UPSTREAM CG15212 DOWNSTREAM CG4597 INTERGENIC
3R	10785211	3R_10785211_SNP [dm3] 3R_14959489_SNP [dm6]	A	T	3.502e^-4	0.841	INTERGENIC
3R	10370500	3R_10370500_SNP [dm3] 3R_14544778_SNP [dm6]	G	A	3.504e^-4	0.841	INTRON Pde6
2L	9489217	2L_9489217_SNP [dm3] 2L_9489217_SNP [dm6]	C	T	3.504e^-4	0.841	INTERGENIC
2R	17064497	2R_17064497_SNP [dm3] 2R_21176992_SNP [dm6]	A	C	3.505e^-4	0.841	DOWNSTREAM CG4286 INTRON Pu
3R	10683112	3R_10683112_SNP [dm3] 3R_14857390_SNP [dm6]	C	T	3.506e^-4	0.841	INTRON btsz
2L	5900518	2L_5900518_SNP [dm3] 2L_5900518_SNP [dm6]	T	C	3.513e^-4	0.841	UPSTREAM CR44579 INTERGENIC
2L	8630434	2L_8630434_SNP [dm3] 2L_8630434_SNP [dm6]	T	A	3.517e^-4	0.841	INTRON Sema-1a
2R	8431229	2R_8431229_SNP [dm3] 2R_12543724_SNP [dm6]	C	A	3.519e^-4	0.841	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14321900	2R_14321900_SNP [dm3] 2R_18434395_SNP [dm6]	T	G	3.521e^-4	0.841	INTRON CG30118
3R	20845534	3R_20845534_SNP [dm3] 3R_25019812_SNP [dm6]	A	C	3.525e^-4	0.841	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18410980	3L_18410980_SNP [dm3] 3L_18417880_SNP [dm6]	A	G	3.527e^-4	0.841	INTERGENIC
3L	18176892	3L_18176892_SNP [dm3] 3L_18183792_SNP [dm6]	T	C	3.535e^-4	0.842	INTRON W
2L	3702516	2L_3702516_SNP [dm3] 2L_3702516_SNP [dm6]	G	A	3.538e^-4	0.842	UPSTREAM CR44311 DOWNSTREAM CG42467 & 1 other INTERGENIC
2L	8370140	2L_8370140_SNP [dm3] 2L_8370140_SNP [dm6]	C	T	3.543e^-4	0.842	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
X	20893443	X_20893443_SNP [dm3] X_21022416_SNP [dm6]	C	T	3.570e^-4	0.844	DOWNSTREAM r-cup INTERGENIC
3R	8040427	3R_8040427_SNP [dm3] 3R_12214705_SNP [dm6]	G	T	3.578e^-4	0.844	UTR_5_PRIME CG14742 UTR_3_PRIME CG4848 DOWNSTREAM CG4848
2L	8300251	2L_8300251_SNP [dm3] 2L_8300251_SNP [dm6]	T	G	3.582e^-4	0.844	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Trl
3L	12955777	3L_12955777_SNP [dm3] 3L_12962677_SNP [dm6]	A	G	3.584e^-4	0.844	INTERGENIC
2L	1450149	2L_1450149_INS [dm3] 2L_1450149_INS [dm6]	A	ATCCGCTGGAAACTA...	3.585e^-4	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	3800871	2L_3800871_SNP [dm3] 2L_3800871_SNP [dm6]	A	T	3.586e^-4	0.844	INTRON CG3921
2R	3882662	2R_3882662_SNP [dm3] 2R_7995157_SNP [dm6]	A	G	3.591e^-4	0.844	UPSTREAM Dic3 DOWNSTREAM Hey INTERGENIC
2L	12127728	2L_12127728_SNP [dm3] 2L_12127728_SNP [dm6]	C	T	3.600e^-4	0.844	SYNONYMOUS_CODING CG17211
2R	1148695	2R_1148695_INS [dm3] 2R_5261190_INS [dm6]	C	CA	3.607e^-4	0.844	INTRON d4	transposable element FlyBase
2R	19246038	2R_19246038_SNP [dm3] 2R_23358515_SNP [dm6]	G	T	3.613e^-4	0.844	UPSTREAM CG3500 & 2 others DOWNSTREAM CG9875 EXON CR44168
X	13529395	X_13529395_SNP [dm3] X_13635362_SNP [dm6]	T	C	3.620e^-4	0.844	INTRON NFAT	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	13529402	X_13529402_SNP [dm3] X_13635369_SNP [dm6]	T	C	3.620e^-4	0.844	INTRON NFAT	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8420763	2L_8420763_SNP [dm3] 2L_8420763_SNP [dm6]	G	A	3.635e^-4	0.844	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9247415	3L_9247415_SNP [dm3] 3L_9254315_SNP [dm6]	G	C	3.643e^-4	0.844	INTRON GluRIB
2R	9253631	2R_9253631_SNP [dm3] 2R_13366126_SNP [dm6]	T	G	3.647e^-4	0.844	INTERGENIC
2L	2724567	2L_2724567_SNP [dm3] 2L_2724567_SNP [dm6]	T	A	3.650e^-4	0.844	INTERGENIC	TF binding site mE1_TFBS_bab1
X	13244547	X_13244547_SNP [dm3] X_13350514_SNP [dm6]	G	T	3.651e^-4	0.844	INTERGENIC
2L	15554591	2L_15554591_SNP [dm3] 2L_15554591_SNP [dm6]	T	G	3.658e^-4	0.844	UTR_5_PRIME kek3
3L	13199067	3L_13199067_SNP [dm3] 3L_13205967_SNP [dm6]	A	G	3.666e^-4	0.844	INTERGENIC
3L	16663190	3L_16663190_SNP [dm3] 3L_16670090_SNP [dm6]	T	C	3.668e^-4	0.844	DOWNSTREAM CR45241 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4914236	X_4914236_SNP [dm3] X_5020203_SNP [dm6]	A	G	3.672e^-4	0.844	INTRON CR44833	regulatory region REDfly_CRMs
2L	4773273	2L_4773273_SNP [dm3] 2L_4773273_SNP [dm6]	A	G	3.674e^-4	0.844	INTRON CG15630
2L	3573113	2L_3573113_SNP [dm3] 2L_3573113_SNP [dm6]	A	T	3.677e^-4	0.844	INTERGENIC	TF binding site mE1_TFBS_cad
2R	8397689	2R_8397689_SNP [dm3] 2R_12510184_SNP [dm6]	T	G	3.681e^-4	0.844	NON_SYNONYMOUS_CODING vis	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	3615748	X_3615748_SNP [dm3] X_3721715_SNP [dm6]	T	G	3.682e^-4	0.844	INTRON tlk
2L	9425941	2L_9425941_SNP [dm3] 2L_9425941_SNP [dm6]	T	C	3.688e^-4	0.844	SYNONYMOUS_CODING Mco1 UPSTREAM Fbp2
2R	9924063	2R_9924063_SNP [dm3] 2R_14036558_SNP [dm6]	A	G	3.689e^-4	0.844	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9924071	2R_9924071_SNP [dm3] 2R_14036566_SNP [dm6]	G	A	3.689e^-4	0.844	INTRON mam	TF binding site BDTNP1_TFBS_dl
3R	3953578	3R_3953578_SNP [dm3] 3R_8127856_SNP [dm6]	A	C	3.693e^-4	0.844	INTRON Gie	TF binding site mE1_TFBS_HSA
2R	12493850	2R_12493850_SNP [dm3] 2R_16606345_SNP [dm6]	G	C	3.699e^-4	0.844	INTERGENIC
2L	1709513	2L_1709513_SNP [dm3] 2L_1709513_SNP [dm6]	G	A	3.710e^-4	0.844	UPSTREAM mRpL48 DOWNSTREAM CR44976 INTRON CG17660	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	23581875	3R_23581875_SNP [dm3] 3R_27756153_SNP [dm6]	C	T	3.715e^-4	0.844	INTERGENIC
2L	9431131	2L_9431131_SNP [dm3] 2L_9431131_SNP [dm6]	G	A	3.728e^-4	0.844	UPSTREAM scat & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9431140	2L_9431140_DEL [dm3] 2L_9431140_DEL [dm6]	TGTATA	T	3.728e^-4	0.844	UPSTREAM scat & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9431185	2L_9431185_SNP [dm3] 2L_9431185_SNP [dm6]	G	A	3.728e^-4	0.844	UPSTREAM scat & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9431204	2L_9431204_SNP [dm3] 2L_9431204_SNP [dm6]	T	G	3.728e^-4	0.844	UPSTREAM scat & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1114375	2L_1114375_SNP [dm3] 2L_1114375_SNP [dm6]	C	T	3.728e^-4	0.844	DOWNSTREAM Pino & 1 other INTERGENIC
2R	9549310	2R_9549310_SNP [dm3] 2R_13661805_SNP [dm6]	G	T	3.732e^-4	0.844	NON_SYNONYMOUS_CODING CG6209 INTRON fas	TF binding site BDTNP1_TFBS_hb
2L	20138723	2L_20138723_INS [dm3] 2L_20138723_INS [dm6]	G	GA	3.745e^-4	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	989005	3L_989005_SNP [dm3] 3L_989005_SNP [dm6]	T	C	3.749e^-4	0.844	SYNONYMOUS_CODING Glut1 UTR_3_PRIME Glut1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	10267324	2R_10267324_SNP [dm3] 2R_14379819_SNP [dm6]	C	T	3.754e^-4	0.844	INTRON Dh44-R1
3L	14329285	3L_14329285_SNP [dm3] 3L_14336185_SNP [dm6]	C	T	3.762e^-4	0.844	INTRON fz
3R	10785078	3R_10785078_SNP [dm3] 3R_14959356_SNP [dm6]	A	G	3.771e^-4	0.844	INTERGENIC
2L	13534575	2L_13534575_SNP [dm3] 2L_13534575_SNP [dm6]	A	G	3.782e^-4	0.844	DOWNSTREAM CG15638 INTRON B4	TF binding site BDTNP1_TFBS_dl
2L	15400380	2L_15400380_SNP [dm3] 2L_15400380_SNP [dm6]	G	T	3.783e^-4	0.844	UPSTREAM CR44860 EXON CR45374
2R	7866429	2R_7866429_SNP [dm3] 2R_11978924_SNP [dm6]	A	C	3.785e^-4	0.844	NON_SYNONYMOUS_CODING CG30036 DOWNSTREAM CG30037	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18176906	3L_18176906_SNP [dm3] 3L_18183806_SNP [dm6]	A	C	3.785e^-4	0.844	INTRON W
X	18294109	X_18294109_SNP [dm3] X_18400076_SNP [dm6]	A	G	3.795e^-4	0.844	UPSTREAM CG34328 INTRON CG32549
X	17123373	X_17123373_SNP [dm3] X_17229340_SNP [dm6]	C	T	3.796e^-4	0.844	DOWNSTREAM CG10597 INTERGENIC
2R	9892461	2R_9892461_SNP [dm3] 2R_14004956_SNP [dm6]	T	A	3.806e^-4	0.844	DOWNSTREAM mir-4978 INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9892462	2R_9892462_SNP [dm3] 2R_14004957_SNP [dm6]	A	T	3.806e^-4	0.844	DOWNSTREAM mir-4978 INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9892463	2R_9892463_DEL [dm3] 2R_14004958_DEL [dm6]	TACTTG	T	3.806e^-4	0.844	DOWNSTREAM mir-4978 INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13182029	3L_13182029_SNP [dm3] 3L_13188929_SNP [dm6]	C	T	3.806e^-4	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	17894409	3R_17894409_SNP [dm3] 3R_22068687_SNP [dm6]	G	A	3.806e^-4	0.844	INTRON how
3R	18901080	3R_18901080_SNP [dm3] 3R_23075358_SNP [dm6]	C	T	3.806e^-4	0.844	SYNONYMOUS_CODING CG13830
2R	10275466	2R_10275466_SNP [dm3] 2R_14387961_SNP [dm6]	A	G	3.808e^-4	0.844	INTERGENIC
2L	7772942	2L_7772942_SNP [dm3] 2L_7772942_SNP [dm6]	A	T	3.813e^-4	0.844	INTRON CG7191
3R	3898261	3R_3898261_SNP [dm3] 3R_8072539_SNP [dm6]	G	A	3.813e^-4	0.844	INTRON mAChR-B	TF binding site BDTNP1_TFBS_dl
X	7140089	X_7140089_SNP [dm3] X_7246056_SNP [dm6]	A	G	3.829e^-4	0.846	INTRON CR44357	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3942561	3R_3942561_SNP [dm3] 3R_8116839_SNP [dm6]	G	A	3.835e^-4	0.846	INTRON puc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	8773254	X_8773254_SNP [dm3] X_8879221_SNP [dm6]	G	T	3.838e^-4	0.846	UPSTREAM Moe INTRON Moe
X	21857748	X_21857748_DEL [dm3] X_22455912_DEL [dm6]	AA	A	3.849e^-4	0.847	UTR_5_PRIME CG14619 UPSTREAM wap & 1 other INTRON CG14619	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	20794408	2L_20794408_SNP [dm3] 2L_20794408_SNP [dm6]	G	A	3.873e^-4	0.85	UPSTREAM CR44146 & 1 other INTRON vari	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14127766	3R_14127766_SNP [dm3] 3R_18302044_SNP [dm6]	G	A	3.879e^-4	0.85	UPSTREAM CG18600 DOWNSTREAM CG7126 INTERGENIC	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9530518	3R_9530518_SNP [dm3] 3R_13704796_SNP [dm6]	T	C	3.883e^-4	0.85	SYNONYMOUS_CODING Adgf-D
3R	10785048	3R_10785048_DEL [dm3] 3R_14959326_DEL [dm6]	GATC	G	3.888e^-4	0.85	INTERGENIC
2L	9431196	2L_9431196_SNP [dm3] 2L_9431196_SNP [dm6]	T	A	3.897e^-4	0.85	UPSTREAM scat & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5285574	3L_5285574_SNP [dm3] 3L_5292474_SNP [dm6]	A	T	3.903e^-4	0.85	INTERGENIC
2L	19181737	2L_19181737_SNP [dm3] 2L_19181737_SNP [dm6]	C	T	3.908e^-4	0.85	UPSTREAM CG17568 DOWNSTREAM CG42688 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21924728	3R_21924728_SNP [dm3] 3R_26099006_SNP [dm6]	A	G	3.912e^-4	0.85	UPSTREAM dys INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9374307	3L_9374307_SNP [dm3] 3L_9381207_SNP [dm6]	T	C	3.913e^-4	0.85	UPSTREAM Hsp23 DOWNSTREAM CR43481 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15204956	2R_15204956_SNP [dm3] 2R_19317451_SNP [dm6]	T	C	3.914e^-4	0.85	INTRON Rgk1
3R	17302250	3R_17302250_SNP [dm3] 3R_21476528_SNP [dm6]	G	T	3.914e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad
3R	9537735	3R_9537735_SNP [dm3] 3R_13712013_SNP [dm6]	C	T	3.918e^-4	0.85	UPSTREAM primo-2 & 1 other DOWNSTREAM CR34044 INTERGENIC
2R	3864842	2R_3864842_SNP [dm3] 2R_7977337_SNP [dm6]	G	A	3.926e^-4	0.85	INTRON ACC	TF binding site mE1_TFBS_cad
2L	12987461	2L_12987461_SNP [dm3] 2L_12987461_SNP [dm6]	A	C	3.926e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	3419522	3R_3419522_SNP [dm3] 3R_7593800_SNP [dm6]	T	G	3.928e^-4	0.85	INTRON CG34127
3R	14914770	3R_14914770_SNP [dm3] 3R_19089048_SNP [dm6]	T	A	3.943e^-4	0.851	INTRON cdi
2L	13115522	2L_13115522_SNP [dm3] 2L_13115522_SNP [dm6]	C	T	3.945e^-4	0.851	INTERGENIC
2L	3627973	2L_3627973_SNP [dm3] 2L_3627973_SNP [dm6]	T	C	3.961e^-4	0.854	INTRON for
3L	18070142	3L_18070142_SNP [dm3] 3L_18077042_SNP [dm6]	T	A	3.967e^-4	0.854	UPSTREAM CR45392 INTERGENIC
2R	16496175	2R_16496175_SNP [dm3] 2R_20608670_SNP [dm6]	C	T	3.986e^-4	0.857	INTRON Hil	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18903459	3L_18903459_SNP [dm3] 3L_18910359_SNP [dm6]	C	T	3.995e^-4	0.857	NON_SYNONYMOUS_CODING Ir75d UTR_3_PRIME CG14077
3R	12126603	3R_12126603_SNP [dm3] 3R_16300881_SNP [dm6]	C	G	3.998e^-4	0.857	INTRON gish	TF binding site BDTNP1_TFBS_dl
2L	8372798	2L_8372798_SNP [dm3] 2L_8372798_SNP [dm6]	C	T	4.004e^-4	0.857	INTRON CG17292	TF binding site mE1_TFBS_HSA
X	10817698	X_10817698_DEL [dm3] X_10923665_DEL [dm6]	CT	C	4.030e^-4	0.857	UPSTREAM v DOWNSTREAM CG43901 INTERGENIC
3L	5285558	3L_5285558_SNP [dm3] 3L_5292458_SNP [dm6]	A	T	4.032e^-4	0.857	INTERGENIC
3R	12924426	3R_12924426_SNP [dm3] 3R_17098704_SNP [dm6]	T	C	4.033e^-4	0.857	UTR_5_PRIME cher INTRON cher
3L	14371915	3L_14371915_SNP [dm3] 3L_14378815_SNP [dm6]	T	C	4.036e^-4	0.857	INTERGENIC
3R	10849581	3R_10849581_SNP [dm3] 3R_15023859_SNP [dm6]	T	C	4.038e^-4	0.857	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	20101862	3L_20101862_SNP [dm3] 3L_20108762_SNP [dm6]	G	A	4.048e^-4	0.857	UTR_3_PRIME Ir76b	TF binding site mE1_TFBS_cad
2L	9686079	2L_9686079_SNP [dm3] 2L_9686079_SNP [dm6]	G	A	4.050e^-4	0.857	INTRON Pka-C1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	12695810	2L_12695810_SNP [dm3] 2L_12695810_SNP [dm6]	T	G	4.056e^-4	0.857	UPSTREAM PICK1 & 1 other DOWNSTREAM CG5781 INTRON PICK1
3L	20279585	3L_20279585_SNP [dm3] 3L_20286485_SNP [dm6]	G	C	4.061e^-4	0.857	INTRON gogo
3L	20279587	3L_20279587_INS [dm3] 3L_20286487_INS [dm6]	T	TCAC	4.061e^-4	0.857	INTRON gogo
3L	18176897	3L_18176897_SNP [dm3] 3L_18183797_SNP [dm6]	T	C	4.066e^-4	0.857	INTRON W
3R	5805701	3R_5805701_SNP [dm3] 3R_9979979_SNP [dm6]	G	T	4.086e^-4	0.857	INTRON Glut4EF	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	10911905	X_10911905_DEL [dm3] X_11017872_DEL [dm6]	TATGT	T	4.088e^-4	0.857	INTRON CG42339	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	21292600	X_21292600_SNP [dm3] X_21421573_SNP [dm6]	A	T	4.090e^-4	0.857	DOWNSTREAM CG42343 INTERGENIC	transposable element FlyBase
2R	5801871	2R_5801871_SNP [dm3] 2R_9914366_SNP [dm6]	T	C	4.094e^-4	0.857	UTR_3_PRIME Mef2 DOWNSTREAM Etf-QO
2L	13232959	2L_13232959_SNP [dm3] 2L_13232959_SNP [dm6]	C	T	4.095e^-4	0.857	SYNONYMOUS_CODING Prosalpha6T DOWNSTREAM CG15479	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	9892181	2R_9892181_SNP [dm3] 2R_14004676_SNP [dm6]	C	T	4.097e^-4	0.857	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	10118548	2R_10118548_SNP [dm3] 2R_14231043_SNP [dm6]	T	C	4.098e^-4	0.857	SYNONYMOUS_CODING Opa1 UTR_3_PRIME Opa1 DOWNSTREAM CG8468	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3238774	2L_3238774_SNP [dm3] 2L_3238774_SNP [dm6]	G	T	4.106e^-4	0.857	INTERGENIC
3L	2177183	3L_2177183_SNP [dm3] 3L_2177183_SNP [dm6]	A	G	4.108e^-4	0.857	INTERGENIC
X	4914301	X_4914301_SNP [dm3] X_5020268_SNP [dm6]	T	C	4.111e^-4	0.857	INTRON CR44833	regulatory region REDfly_CRMs
3L	18646229	3L_18646229_SNP [dm3] 3L_18653129_SNP [dm6]	T	A	4.115e^-4	0.857	INTRON MYPT-75D
3L	18646230	3L_18646230_SNP [dm3] 3L_18653130_SNP [dm6]	C	T	4.115e^-4	0.857	INTRON MYPT-75D
3L	18646232	3L_18646232_SNP [dm3] 3L_18653132_SNP [dm6]	T	A	4.115e^-4	0.857	INTRON MYPT-75D
2R	10115308	2R_10115308_SNP [dm3] 2R_14227803_SNP [dm6]	C	T	4.120e^-4	0.857	SYNONYMOUS_CODING CG8468	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10597476	3L_10597476_SNP [dm3] 3L_10604376_SNP [dm6]	G	T	4.145e^-4	0.857	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12444539	X_12444539_SNP [dm3] X_12550506_SNP [dm6]	G	C	4.150e^-4	0.857	INTRON CG43921
X	19906355	X_19906355_INS [dm3] X_20012322_INS [dm6]	G	GG	4.150e^-4	0.857	INTRON Dop2R
2R	9711267	2R_9711267_SNP [dm3] 2R_13823762_SNP [dm6]	T	G	4.152e^-4	0.857	INTRON fl_2_d	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9977193	2R_9977193_SNP [dm3] 2R_14089688_SNP [dm6]	C	A	4.173e^-4	0.857	UPSTREAM CG42287 INTRON Prosap
2R	14299225	2R_14299225_SNP [dm3] 2R_18411720_SNP [dm6]	T	C	4.183e^-4	0.857	UPSTREAM Dp1 & 1 other INTRON imd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	2192669	3L_2192669_SNP [dm3] 3L_2192669_SNP [dm6]	C	A	4.183e^-4	0.857	UPSTREAM CG5707 INTERGENIC
2R	11992818	2R_11992818_SNP [dm3] 2R_16105313_SNP [dm6]	C	T	4.186e^-4	0.857	INTRON Rho1	TF binding site BDTNP1_TFBS_dl
2R	4414760	2R_4414760_SNP [dm3] 2R_8527255_SNP [dm6]	A	C	4.187e^-4	0.857	INTRON mtt
3R	6331681	3R_6331681_SNP [dm3] 3R_10505959_SNP [dm6]	A	G	4.187e^-4	0.857	INTERGENIC
3R	3416388	3R_3416388_SNP [dm3] 3R_7590666_SNP [dm6]	C	T	4.196e^-4	0.857	INTRON CG34127
2L	21283556	2L_21283556_SNP [dm3] 2L_21283556_SNP [dm6]	A	G	4.200e^-4	0.857	DOWNSTREAM CG8671 EXON Cyp6t2Psi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6443018	X_6443018_DEL [dm3] X_6548985_DEL [dm6]	TGCATT	A	4.209e^-4	0.857	INTRON CG34417
X	6443028	X_6443028_SNP [dm3] X_6548995_SNP [dm6]	T	A	4.209e^-4	0.857	INTRON CG34417
X	6443032	X_6443032_DEL [dm3] X_6548999_DEL [dm6]	AGTACATC	A	4.209e^-4	0.857	INTRON CG34417
3L	7497052	3L_7497052_SNP [dm3] 3L_7503952_SNP [dm6]	A	T	4.213e^-4	0.857	INTERGENIC
3R	17136760	3R_17136760_SNP [dm3] 3R_21311038_SNP [dm6]	T	C	4.214e^-4	0.857	DOWNSTREAM Hsromega EXON Hsromega
X	12513594	X_12513594_SNP [dm3] X_12619561_SNP [dm6]	A	T	4.216e^-4	0.857	INTRON CG11085
2R	14547343	2R_14547343_SNP [dm3] 2R_18659838_SNP [dm6]	C	T	4.221e^-4	0.857	SYNONYMOUS_CODING Gint3 UTR_3_PRIME CG42306	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18517597	2L_18517597_SNP [dm3] 2L_18517597_SNP [dm6]	C	T	4.221e^-4	0.857	UTR_5_PRIME CG10211	TF binding site mE1_TFBS_Trl
3L	9613062	3L_9613062_SNP [dm3] 3L_9619962_SNP [dm6]	C	T	4.234e^-4	0.857	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12484591	X_12484591_SNP [dm3] X_12590558_SNP [dm6]	A	T	4.239e^-4	0.857	UPSTREAM LIMK1 INTRON LIMK1	TF binding site BDTNP1_TFBS_dl
3R	19627613	3R_19627613_SNP [dm3] 3R_23801891_SNP [dm6]	A	G	4.239e^-4	0.857	UTR_3_PRIME CG33111 DOWNSTREAM mbc
3L	291809	3L_291809_SNP [dm3] 3L_291809_SNP [dm6]	G	A	4.239e^-4	0.857	UPSTREAM RhoGEF3 INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	17760875	2L_17760875_DEL [dm3] 2L_17760875_DEL [dm6]	GT	G	4.243e^-4	0.857	INTRON CadN
2R	10273964	2R_10273964_SNP [dm3] 2R_14386459_SNP [dm6]	C	A	4.246e^-4	0.857	INTERGENIC
2L	6108791	2L_6108791_SNP [dm3] 2L_6108791_SNP [dm6]	A	G	4.246e^-4	0.857	UPSTREAM stai INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3L	15946808	3L_15946808_INS [dm3] 3L_15953708_INS [dm6]	T	ACCCTGA	4.248e^-4	0.857	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	994897	2L_994897_SNP [dm3] 2L_994897_SNP [dm6]	T	G	4.257e^-4	0.857	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14758362	2R_14758362_SNP [dm3] 2R_18870857_SNP [dm6]	C	A	4.257e^-4	0.857	INTERGENIC
3L	18177096	3L_18177096_INS [dm3] 3L_18183996_INS [dm6]	T	TT	4.258e^-4	0.857	INTRON W
2L	12702958	2L_12702958_SNP [dm3] 2L_12702958_SNP [dm6]	C	T	4.259e^-4	0.857	SYNONYMOUS_CODING CG5776	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7700618	3L_7700618_SNP [dm3] 3L_7707518_SNP [dm6]	A	G	4.267e^-4	0.857	INTRON CG32373 & 1 other	TF binding site mE1_TFBS_chinmo
3R	6331716	3R_6331716_SNP [dm3] 3R_10505994_SNP [dm6]	A	T	4.272e^-4	0.857	INTERGENIC
2R	11484627	2R_11484627_SNP [dm3] 2R_15597122_SNP [dm6]	T	C	4.275e^-4	0.857	INTERGENIC
2R	12495931	2R_12495931_SNP [dm3] 2R_16608426_SNP [dm6]	A	C	4.289e^-4	0.858	UPSTREAM CG5065 INTRON CG5065	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13134402	2L_13134402_SNP [dm3] 2L_13134402_SNP [dm6]	A	C	4.309e^-4	0.858	SYNONYMOUS_CODING CG5122
2L	12377919	2L_12377919_DEL [dm3] 2L_12377919_DEL [dm6]	GGCTG	G	4.316e^-4	0.858	INTRON bru-2
3R	23182231	3R_23182231_SNP [dm3] 3R_27356509_SNP [dm6]	C	T	4.319e^-4	0.858	INTRON CG42534
2L	13080118	2L_13080118_SNP [dm3] 2L_13080118_SNP [dm6]	C	T	4.326e^-4	0.858	INTERGENIC
2L	7000501	2L_7000501_SNP [dm3] 2L_7000501_SNP [dm6]	A	G	4.327e^-4	0.858	INTRON uif
2R	14475421	2R_14475421_SNP [dm3] 2R_18587916_SNP [dm6]	G	A	4.327e^-4	0.858	INTRON GEFmeso
2R	14475422	2R_14475422_SNP [dm3] 2R_18587917_SNP [dm6]	G	A	4.327e^-4	0.858	INTRON GEFmeso
2R	14475428	2R_14475428_SNP [dm3] 2R_18587923_SNP [dm6]	G	C	4.327e^-4	0.858	INTRON GEFmeso
3L	18485460	3L_18485460_SNP [dm3] 3L_18492360_SNP [dm6]	G	T	4.328e^-4	0.858	INTRON AstC-R2
X	17411888	X_17411888_SNP [dm3] X_17517855_SNP [dm6]	C	T	4.333e^-4	0.858	INTRON CG43658
3R	17137902	3R_17137902_SNP [dm3] 3R_21312180_SNP [dm6]	T	A	4.336e^-4	0.858	EXON Hsromega
2R	19774928	2R_19774928_SNP [dm3] 2R_23887405_SNP [dm6]	T	C	4.345e^-4	0.859	INTRON CG5597
X	22240982	X_22240982_SNP [dm3] X_22839146_SNP [dm6]	G	C	4.350e^-4	0.859	INTRON fog & 1 other
3L	3826101	3L_3826101_SNP [dm3] 3L_3826101_SNP [dm6]	T	A	4.355e^-4	0.859	INTRON enc & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2943250	2L_2943250_SNP [dm3] 2L_2943250_SNP [dm6]	A	G	4.367e^-4	0.861	INTRON lilli
2L	9527215	2L_9527215_SNP [dm3] 2L_9527215_SNP [dm6]	G	A	4.372e^-4	0.861	INTRON Oatp30B
X	15875675	X_15875675_SNP [dm3] X_15981642_SNP [dm6]	G	A	4.386e^-4	0.862	SYNONYMOUS_CODING CG9170	TF binding site mE1_TFBS_cad
3R	23595760	3R_23595760_SNP [dm3] 3R_27770038_SNP [dm6]	A	G	4.395e^-4	0.862	SYNONYMOUS_CODING CG34353	TF binding site BDTNP1_TFBS_dl
2L	7193520	2L_7193520_SNP [dm3] 2L_7193520_SNP [dm6]	C	G	4.395e^-4	0.862	INTRON CG4497	TF binding site BDTNP1_TFBS_dl
X	8617467	X_8617467_SNP [dm3] X_8723434_SNP [dm6]	T	C	4.398e^-4	0.862	INTERGENIC
X	7139596	X_7139596_SNP [dm3] X_7245563_SNP [dm6]	C	T	4.425e^-4	0.866	INTRON CR44357	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7139600	X_7139600_SNP [dm3] X_7245567_SNP [dm6]	C	T	4.425e^-4	0.866	INTRON CR44357	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19072143	3L_19072143_SNP [dm3] 3L_19079043_SNP [dm6]	C	A	4.436e^-4	0.867	INTRON Mkp3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	2888388	X_2888388_SNP [dm3] X_2994355_SNP [dm6]	T	C	4.452e^-4	0.868	INTRON kirre	TF binding site mE1_TFBS_HSA
X	18293679	X_18293679_SNP [dm3] X_18399646_SNP [dm6]	T	C	4.456e^-4	0.868	NON_SYNONYMOUS_CODING CG34328 INTRON CG32549
X	18293795	X_18293795_SNP [dm3] X_18399762_SNP [dm6]	A	G	4.456e^-4	0.868	SYNONYMOUS_CODING CG34328 INTRON CG32549
3L	3643966	3L_3643966_SNP [dm3] 3L_3643966_SNP [dm6]	A	C	4.461e^-4	0.868	INTRON dar1	TF binding site mE1_TFBS_cad
2R	10723672	2R_10723672_SNP [dm3] 2R_14836167_SNP [dm6]	C	T	4.466e^-4	0.868	INTERGENIC
X	5441251	X_5441251_SNP [dm3] X_5547218_SNP [dm6]	C	G	4.469e^-4	0.868	INTRON Vsx2	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	18802068	2L_18802068_SNP [dm3] 2L_18802068_SNP [dm6]	T	A	4.480e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21292604	X_21292604_SNP [dm3] X_21421577_SNP [dm6]	T	A	4.496e^-4	0.868	DOWNSTREAM CG42343 INTERGENIC	transposable element FlyBase
2L	6723597	2L_6723597_SNP [dm3] 2L_6723597_SNP [dm6]	G	A	4.505e^-4	0.868	UPSTREAM Liprin-alpha & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	8498280	3R_8498280_SNP [dm3] 3R_12672558_SNP [dm6]	G	A	4.511e^-4	0.868	INTRON CG14395	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1893216	2R_1893216_SNP [dm3] 2R_6005711_SNP [dm6]	A	C	4.514e^-4	0.868	INTRON Src42A
3L	9964797	3L_9964797_SNP [dm3] 3L_9971697_SNP [dm6]	G	T	4.519e^-4	0.868	SYNONYMOUS_CODING CG6674 UPSTREAM vnc & 1 other DOWNSTREAM Nc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	10809308	2R_10809308_SNP [dm3] 2R_14921803_SNP [dm6]	T	A	4.529e^-4	0.868	INTRON CG10249
2R	18448928	2R_18448928_SNP [dm3] 2R_22561423_SNP [dm6]	G	A	4.550e^-4	0.868	UPSTREAM CG11362 INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn
2L	8501920	2L_8501920_SNP [dm3] 2L_8501920_SNP [dm6]	G	A	4.551e^-4	0.868	INTRON Dh31
2R	4414929	2R_4414929_SNP [dm3] 2R_8527424_SNP [dm6]	C	A	4.559e^-4	0.868	INTRON mtt
3R	17141225	3R_17141225_SNP [dm3] 3R_21315503_SNP [dm6]	T	G	4.563e^-4	0.868	EXON Hsromega	TF binding site mE1_TFBS_zfh1
2L	16520287	2L_16520287_SNP [dm3] 2L_16520287_SNP [dm6]	C	G	4.570e^-4	0.868	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2L	12702918	2L_12702918_SNP [dm3] 2L_12702918_SNP [dm6]	C	G	4.574e^-4	0.868	NON_SYNONYMOUS_CODING CG5776	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6723677	2L_6723677_SNP [dm3] 2L_6723677_SNP [dm6]	G	A	4.590e^-4	0.868	UPSTREAM Liprin-alpha & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	15859899	2R_15859899_SNP [dm3] 2R_19972394_SNP [dm6]	G	A	4.591e^-4	0.868	INTERGENIC
3R	20601113	3R_20601113_SNP [dm3] 3R_24775391_SNP [dm6]	G	C	4.604e^-4	0.868	INTRON CG42331
2R	15942434	2R_15942434_SNP [dm3] 2R_20054929_SNP [dm6]	T	G	4.608e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	19614238	3R_19614238_SNP [dm3] 3R_23788516_SNP [dm6]	A	C	4.608e^-4	0.868	INTRON mbc	TF binding site BDTNP1_TFBS_dl
3L	1356053	3L_1356053_SNP [dm3] 3L_1356053_SNP [dm6]	A	C	4.611e^-4	0.868	INTRON Ptp61F	TF binding site mE1_TFBS_inv
2L	2819382	2L_2819382_SNP [dm3] 2L_2819382_SNP [dm6]	A	G	4.616e^-4	0.868	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1704287	2R_1704287_SNP [dm3] 2R_5816782_SNP [dm6]	G	T	4.627e^-4	0.868	INTRON dpr12
2R	19775119	2R_19775119_SNP [dm3] 2R_23887596_SNP [dm6]	A	T	4.627e^-4	0.868	INTRON CG5597
3R	9854753	3R_9854753_SNP [dm3] 3R_14029031_SNP [dm6]	T	C	4.630e^-4	0.868	UPSTREAM Cyp6d5 INTRON rdx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2L	16198338	2L_16198338_SNP [dm3] 2L_16198338_SNP [dm6]	C	T	4.632e^-4	0.868	INTERGENIC
X	4914235	X_4914235_SNP [dm3] X_5020202_SNP [dm6]	A	T	4.633e^-4	0.868	INTRON CR44833	regulatory region REDfly_CRMs
3R	19042829	3R_19042829_INS [dm3] 3R_23217107_INS [dm6]	A	AA	4.633e^-4	0.868	INTRON cnc
2R	9928153	2R_9928153_SNP [dm3] 2R_14040648_SNP [dm6]	G	A	4.635e^-4	0.868	NON_SYNONYMOUS_CODING mam INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	18046427	3R_18046427_SNP [dm3] 3R_22220705_SNP [dm6]	C	T	4.640e^-4	0.868	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6116465	2L_6116465_SNP [dm3] 2L_6116465_SNP [dm6]	G	A	4.641e^-4	0.868	INTRON stai
2L	10867312	2L_10867312_SNP [dm3] 2L_10867312_SNP [dm6]	C	G	4.643e^-4	0.868	INTERGENIC
2L	1732310	2L_1732310_INS [dm3] 2L_1732310_INS [dm6]	A	ACAAA	4.649e^-4	0.868	UTR_5_PRIME CG17652 UPSTREAM CG17646	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	10785046	3R_10785046_SNP [dm3] 3R_14959324_SNP [dm6]	A	T	4.654e^-4	0.868	INTERGENIC
3R	13688623	3R_13688623_SNP [dm3] 3R_17862901_SNP [dm6]	G	T	4.655e^-4	0.868	INTRON tinc
2R	8995804	2R_8995804_SNP [dm3] 2R_13108299_SNP [dm6]	A	T	4.655e^-4	0.868	INTERGENIC
2R	12693938	2R_12693938_SNP [dm3] 2R_16806433_SNP [dm6]	G	C	4.660e^-4	0.868	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16647428	3L_16647428_SNP [dm3] 3L_16654328_SNP [dm6]	C	G	4.660e^-4	0.868	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
2L	3458621	2L_3458621_SNP [dm3] 2L_3458621_SNP [dm6]	T	C	4.662e^-4	0.868	SYNONYMOUS_CODING Sec5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2554157	2L_2554157_SNP [dm3] 2L_2554157_SNP [dm6]	C	A	4.669e^-4	0.868	INTERGENIC
3L	3628418	3L_3628418_SNP [dm3] 3L_3628418_SNP [dm6]	T	C	4.680e^-4	0.868	INTRON dar1
X	10159173	X_10159173_SNP [dm3] X_10265140_SNP [dm6]	A	C	4.680e^-4	0.868	UTR_5_PRIME CG12643	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12702892	2L_12702892_SNP [dm3] 2L_12702892_SNP [dm6]	C	A	4.682e^-4	0.868	NON_SYNONYMOUS_CODING CG5776	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12702903	2L_12702903_SNP [dm3] 2L_12702903_SNP [dm6]	T	G	4.682e^-4	0.868	NON_SYNONYMOUS_CODING CG5776	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens

By genomic position
Variant impact
Gene name

Microbiota_OTU014 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results