DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.551e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.04816
In_3R_Mo	0.06657

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2166 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	2287353	3R_2287353_DEL [dm3] 3R_6461631_DEL [dm6]	ACTTAATGCCTAACAACAAC...	A	8.192e^-8	0.13	INTERGENIC
2R	2882279	2R_2882279_SNP [dm3] 2R_6994774_SNP [dm6]	T	C	1.402e^-7	0.13	DOWNSTREAM CG30159 INTRON Tsp42Ea	TF binding site mE1_TFBS_Trl
3R	12210089	3R_12210089_SNP [dm3] 3R_16384367_SNP [dm6]	C	T	8.976e^-7	0.31	INTRON ss	regulatory region REDfly_CRMs
3R	2287402	3R_2287402_INS [dm3] 3R_6461680_INS [dm6]	A	AA	1.016e^-6	0.31	INTERGENIC
2L	2735023	2L_2735023_INS [dm3] 2L_2735023_INS [dm6]	G	TA	1.146e^-6	0.31	UPSTREAM CG31689 INTRON CG31689
X	19877188	X_19877188_SNP [dm3] X_19983155_SNP [dm6]	C	G	1.324e^-6	0.31	INTERGENIC
3L	7221082	3L_7221082_SNP [dm3] 3L_7227982_SNP [dm6]	T	A	1.442e^-6	0.31	INTERGENIC
3R	11341833	3R_11341833_SNP [dm3] 3R_15516111_SNP [dm6]	T	C	1.456e^-6	0.31	INTERGENIC
3R	10849873	3R_10849873_SNP [dm3] 3R_15024151_SNP [dm6]	T	G	1.554e^-6	0.31	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12896174	3R_12896174_SNP [dm3] 3R_17070452_SNP [dm6]	A	G	1.664e^-6	0.31	DOWNSTREAM Ns1 & 1 other INTERGENIC
2L	13998264	2L_13998264_INS [dm3] 2L_13998264_INS [dm6]	T	TTAGAAAGT	2.151e^-6	0.333	INTRON rk
2L	21009759	2L_21009759_SNP [dm3] 2L_21009759_SNP [dm6]	C	G	2.186e^-6	0.333	INTRON CG42238	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	11342771	3R_11342771_DEL [dm3] 3R_15517049_DEL [dm6]	TCTCCACAGACT...	T	2.717e^-6	0.333	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	2285727	3R_2285727_SNP [dm3] 3R_6460005_SNP [dm6]	T	C	2.880e^-6	0.333	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	17937590	2L_17937590_SNP [dm3] 2L_17937590_SNP [dm6]	T	C	2.929e^-6	0.333	INTERGENIC
2L	12779647	2L_12779647_SNP [dm3] 2L_12779647_SNP [dm6]	G	A	3.054e^-6	0.333	INTERGENIC
2L	2735028	2L_2735028_SNP [dm3] 2L_2735028_SNP [dm6]	C	G	3.237e^-6	0.333	UPSTREAM CG31689 INTRON CG31689
2L	16063746	2L_16063746_SNP [dm3] 2L_16063746_SNP [dm6]	G	C	3.345e^-6	0.333	INTRON beat-Ia	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	5444829	3L_5444829_SNP [dm3] 3L_5451729_SNP [dm6]	T	C	3.540e^-6	0.333	INTERGENIC
X	6624836	X_6624836_DEL [dm3] X_6730803_DEL [dm6]	CATTTTTCCTC...	C	3.834e^-6	0.333	UPSTREAM CG3168 INTRON CG3168
2L	17937581	2L_17937581_SNP [dm3] 2L_17937581_SNP [dm6]	A	C	3.839e^-6	0.333	INTERGENIC
3L	15790682	3L_15790682_DEL [dm3] 3L_15797582_DEL [dm6]	TA	T	3.978e^-6	0.333	INTERGENIC
X	12823916	X_12823916_SNP [dm3] X_12929883_SNP [dm6]	T	C	4.180e^-6	0.333	INTRON fne	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25451499	3R_25451499_SNP [dm3] 3R_29625777_SNP [dm6]	A	G	4.298e^-6	0.333	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	16063742	2L_16063742_SNP [dm3] 2L_16063742_SNP [dm6]	T	C	4.898e^-6	0.35	INTRON beat-Ia	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	19877187	X_19877187_SNP [dm3] X_19983154_SNP [dm6]	C	T	5.280e^-6	0.35	INTERGENIC
3R	11342215	3R_11342215_SNP [dm3] 3R_15516493_SNP [dm6]	C	T	5.613e^-6	0.35	INTERGENIC
2L	20359648	2L_20359648_SNP [dm3] 2L_20359648_SNP [dm6]	G	A	5.646e^-6	0.35	DOWNSTREAM RtGEF INTRON RtGEF
3R	11342729	3R_11342729_SNP [dm3] 3R_15517007_SNP [dm6]	A	C	5.690e^-6	0.35	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	11342118	3R_11342118_SNP [dm3] 3R_15516396_SNP [dm6]	C	A	5.848e^-6	0.35	INTERGENIC
2L	16063704	2L_16063704_SNP [dm3] 2L_16063704_SNP [dm6]	A	G	6.436e^-6	0.35	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
2L	16063710	2L_16063710_SNP [dm3] 2L_16063710_SNP [dm6]	A	G	6.507e^-6	0.35	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
2L	20331677	2L_20331677_SNP [dm3] 2L_20331677_SNP [dm6]	A	G	6.556e^-6	0.35	INTRON spir
2L	16063744	2L_16063744_SNP [dm3] 2L_16063744_SNP [dm6]	T	C	6.669e^-6	0.35	INTRON beat-Ia	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	14943493	3R_14943493_SNP [dm3] 3R_19117771_SNP [dm6]	T	C	6.727e^-6	0.35	INTRON CG6040
2R	4682739	2R_4682739_SNP [dm3] 2R_8795234_SNP [dm6]	G	A	6.920e^-6	0.35	INTERGENIC
2L	17937597	2L_17937597_SNP [dm3] 2L_17937597_SNP [dm6]	C	A	7.367e^-6	0.35	INTERGENIC
2L	16063671	2L_16063671_SNP [dm3] 2L_16063671_SNP [dm6]	G	A	7.497e^-6	0.35	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
2L	16063676	2L_16063676_INS [dm3] 2L_16063676_INS [dm6]	C	AT	7.497e^-6	0.35	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
3L	8895277	3L_8895277_SNP [dm3] 3L_8902177_SNP [dm6]	G	A	7.534e^-6	0.35	UPSTREAM TrpA1 INTRON TrpA1
3R	12896178	3R_12896178_SNP [dm3] 3R_17070456_SNP [dm6]	G	A	7.867e^-6	0.357	DOWNSTREAM Ns1 & 1 other INTERGENIC
3R	25451580	3R_25451580_SNP [dm3] 3R_29625858_SNP [dm6]	C	A	8.451e^-6	0.365	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25451581	3R_25451581_SNP [dm3] 3R_29625859_SNP [dm6]	C	A	8.451e^-6	0.365	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12169749	2L_12169749_SNP [dm3] 2L_12169749_SNP [dm6]	T	C	8.637e^-6	0.365	UTR_3_PRIME CG31760 UPSTREAM CG17217	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12210079	3R_12210079_SNP [dm3] 3R_16384357_SNP [dm6]	T	A	1.001e^-5	0.414	INTRON ss	regulatory region REDfly_CRMs
2L	20075713	2L_20075713_SNP [dm3] 2L_20075713_SNP [dm6]	C	G	1.078e^-5	0.436	UPSTREAM neb & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	12724112	2L_12724112_SNP [dm3] 2L_12724112_SNP [dm6]	T	C	1.159e^-5	0.449	INTRON MRP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	12724133	2L_12724133_SNP [dm3] 2L_12724133_SNP [dm6]	T	C	1.159e^-5	0.449	INTRON MRP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	15051899	3R_15051899_SNP [dm3] 3R_19226177_SNP [dm6]	T	G	1.268e^-5	0.474	DOWNSTREAM CG11703 INTRON vib	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	7395815	3L_7395815_SNP [dm3] 3L_7402715_SNP [dm6]	C	A	1.274e^-5	0.474	INTRON CG8560	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20334426	2L_20334426_SNP [dm3] 2L_20334426_SNP [dm6]	G	T	1.331e^-5	0.476	INTRON spir
X	3528653	X_3528653_SNP [dm3] X_3634620_SNP [dm6]	A	G	1.345e^-5	0.476	INTRON AstA-R1
3R	11342086	3R_11342086_SNP [dm3] 3R_15516364_SNP [dm6]	A	T	1.356e^-5	0.476	INTERGENIC
3R	14896155	3R_14896155_DEL [dm3] 3R_19070433_DEL [dm6]	CC	C	1.442e^-5	0.497	INTRON cdi
2L	10478277	2L_10478277_SNP [dm3] 2L_10478277_SNP [dm6]	T	A	1.470e^-5	0.497	INTRON RluA-2
X	5493581	X_5493581_SNP [dm3] X_5599548_SNP [dm6]	G	A	1.513e^-5	0.503	INTRON Vsx1
3R	2282359	3R_2282359_SNP [dm3] 3R_6456637_SNP [dm6]	C	T	1.599e^-5	0.522	UTR_5_PRIME CG9727 UPSTREAM Zif & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2L	17937588	2L_17937588_SNP [dm3] 2L_17937588_SNP [dm6]	C	T	1.762e^-5	0.557	INTERGENIC
2R	15058720	2R_15058720_SNP [dm3] 2R_19171215_SNP [dm6]	T	G	1.767e^-5	0.557	INTRON CG10737
2L	12779642	2L_12779642_SNP [dm3] 2L_12779642_SNP [dm6]	G	A	1.940e^-5	0.602	INTERGENIC
2L	8000295	2L_8000295_SNP [dm3] 2L_8000295_SNP [dm6]	A	G	1.990e^-5	0.607	DOWNSTREAM Sirup INTRON Wwox	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18209327	3L_18209327_SNP [dm3] 3L_18216227_SNP [dm6]	T	A	2.083e^-5	0.625	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20336420	2L_20336420_SNP [dm3] 2L_20336420_SNP [dm6]	G	A	2.185e^-5	0.633	INTRON spir
3R	9855212	3R_9855212_SNP [dm3] 3R_14029490_SNP [dm6]	T	A	2.266e^-5	0.633	SYNONYMOUS_CODING Cyp6d5 INTRON rdx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3R	26074742	3R_26074742_SNP [dm3] 3R_30249020_SNP [dm6]	G	A	2.280e^-5	0.633	UPSTREAM tRNA:CR31383 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	18995624	2L_18995624_SNP [dm3] 2L_18995624_SNP [dm6]	T	C	2.300e^-5	0.633	SYNONYMOUS_CODING CG10650
3L	8901978	3L_8901978_SNP [dm3] 3L_8908878_SNP [dm6]	G	T	2.318e^-5	0.633	SYNONYMOUS_CODING mfr UTR_5_PRIME mfr UTR_3_PRIME mfr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19398092	X_19398092_SNP [dm3] X_19504059_SNP [dm6]	G	T	2.324e^-5	0.633	UPSTREAM Pfrx INTRON Pfrx & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	736383	2L_736383_SNP [dm3] 2L_736383_SNP [dm6]	G	A	2.349e^-5	0.633	DOWNSTREAM Eaat2 INTERGENIC
3R	14853539	3R_14853539_SNP [dm3] 3R_19027817_SNP [dm6]	T	C	2.439e^-5	0.645	SYNONYMOUS_CODING NP15.6 INTRON gatA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16136747	2L_16136747_DEL [dm3] 2L_16136747_DEL [dm6]	TT	T	2.487e^-5	0.645	UPSTREAM CR44871 INTERGENIC
2L	21725536	2L_21725536_SNP [dm3] 2L_21725536_SNP [dm6]	A	G	2.574e^-5	0.645	INTRON CG31619	transposable element FlyBase
2L	5669821	2L_5669821_SNP [dm3] 2L_5669821_SNP [dm6]	A	G	2.574e^-5	0.645	SYNONYMOUS_CODING Hsp60C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13433604	2L_13433604_SNP [dm3] 2L_13433604_SNP [dm6]	G	C	2.605e^-5	0.645	INTRON CG42784
2L	20324587	2L_20324587_SNP [dm3] 2L_20324587_SNP [dm6]	C	T	2.609e^-5	0.645	INTRON spir
2L	9465933	2L_9465933_SNP [dm3] 2L_9465933_SNP [dm6]	A	G	2.650e^-5	0.645	INTERGENIC
2L	16063726	2L_16063726_SNP [dm3] 2L_16063726_SNP [dm6]	T	C	2.670e^-5	0.645	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
2L	19724017	2L_19724017_SNP [dm3] 2L_19724017_SNP [dm6]	A	T	2.808e^-5	0.651	INTRON Lar
3L	7395804	3L_7395804_SNP [dm3] 3L_7402704_SNP [dm6]	C	A	2.865e^-5	0.651	INTRON CG8560	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21882791	2L_21882791_SNP [dm3] 2L_21882791_SNP [dm6]	G	C	2.867e^-5	0.651	INTERGENIC
3R	10849828	3R_10849828_SNP [dm3] 3R_15024106_SNP [dm6]	G	A	2.938e^-5	0.651	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10849852	3R_10849852_SNP [dm3] 3R_15024130_SNP [dm6]	T	C	2.938e^-5	0.651	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10849874	3R_10849874_SNP [dm3] 3R_15024152_SNP [dm6]	T	A	2.938e^-5	0.651	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16063667	2L_16063667_SNP [dm3] 2L_16063667_SNP [dm6]	A	C	3.018e^-5	0.651	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
X	11186139	X_11186139_SNP [dm3] X_11292106_SNP [dm6]	G	A	3.055e^-5	0.651	INTRON CG44422
3L	1463180	3L_1463180_SNP [dm3] 3L_1463180_SNP [dm6]	C	T	3.095e^-5	0.651	UPSTREAM CR44842 & 1 other INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	10254359	2R_10254359_DEL [dm3] 2R_14366854_DEL [dm6]	TT	T	3.117e^-5	0.651	UTR_5_PRIME CG34442 DOWNSTREAM CG34184
X	17313287	X_17313287_SNP [dm3] X_17419254_SNP [dm6]	C	G	3.195e^-5	0.651	INTRON CG8611
3L	7220792	3L_7220792_SNP [dm3] 3L_7227692_SNP [dm6]	A	T	3.197e^-5	0.651	INTERGENIC
3L	8724603	3L_8724603_SNP [dm3] 3L_8731503_SNP [dm6]	C	T	3.209e^-5	0.651	UPSTREAM Cp16 DOWNSTREAM Cp19 INTERGENIC
2L	1082268	2L_1082268_SNP [dm3] 2L_1082268_SNP [dm6]	A	G	3.214e^-5	0.651	SYNONYMOUS_CODING Atg4a DOWNSTREAM CG4629	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	1868790	3L_1868790_SNP [dm3] 3L_1868790_SNP [dm6]	A	C	3.298e^-5	0.651	UTR_3_PRIME CG12025 DOWNSTREAM CG12025
2L	16042709	2L_16042709_SNP [dm3] 2L_16042709_SNP [dm6]	G	A	3.346e^-5	0.651	UPSTREAM BicC & 1 other INTRON BicC & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5444814	3L_5444814_SNP [dm3] 3L_5451714_SNP [dm6]	C	T	3.367e^-5	0.651	INTERGENIC
3R	9749922	3R_9749922_INS [dm3] 3R_13924200_INS [dm6]	A	AA	3.377e^-5	0.651	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13433592	2L_13433592_SNP [dm3] 2L_13433592_SNP [dm6]	A	C	3.377e^-5	0.651	INTRON CG42784
2L	10895326	2L_10895326_SNP [dm3] 2L_10895326_SNP [dm6]	A	C	3.392e^-5	0.651	EXON CR44491
2L	10487588	2L_10487588_SNP [dm3] 2L_10487588_SNP [dm6]	T	C	3.526e^-5	0.655	INTRON CG7456	TF binding site mE1_TFBS_inv
2L	8098939	2L_8098939_SNP [dm3] 2L_8098939_SNP [dm6]	T	C	3.584e^-5	0.655	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	18450177	3R_18450177_SNP [dm3] 3R_22624455_SNP [dm6]	T	G	3.614e^-5	0.655	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	10215150	3R_10215150_INS [dm3] 3R_14389428_INS [dm6]	T	TTTAGGTTTGGTAAAATGTC...	3.671e^-5	0.655	INTERGENIC
2L	3238057	2L_3238057_SNP [dm3] 2L_3238057_SNP [dm6]	C	T	3.780e^-5	0.655	INTERGENIC
2L	6488827	2L_6488827_SNP [dm3] 2L_6488827_SNP [dm6]	A	C	3.794e^-5	0.655	UPSTREAM epsilonCOP & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2835602	3L_2835602_SNP [dm3] 3L_2835602_SNP [dm6]	C	A	3.830e^-5	0.655	INTRON CG43444
2R	2910095	2R_2910095_SNP [dm3] 2R_7022590_SNP [dm6]	T	G	3.860e^-5	0.655	DOWNSTREAM CR44172 INTERGENIC
2L	10725067	2L_10725067_SNP [dm3] 2L_10725067_SNP [dm6]	A	G	3.874e^-5	0.655	UPSTREAM CG6431 INTRON CG6431
3R	6343070	3R_6343070_SNP [dm3] 3R_10517348_SNP [dm6]	C	T	3.880e^-5	0.655	INTRON hth	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	3544258	2L_3544258_SNP [dm3] 2L_3544258_SNP [dm6]	T	C	3.930e^-5	0.655	INTRON drm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17797068	2L_17797068_SNP [dm3] 2L_17797068_SNP [dm6]	T	A	3.946e^-5	0.655	INTRON CadN2
2R	10611643	2R_10611643_SNP [dm3] 2R_14724138_SNP [dm6]	G	C	4.012e^-5	0.655	INTERGENIC
X	15537928	X_15537928_SNP [dm3] X_15643895_SNP [dm6]	T	C	4.016e^-5	0.655	UPSTREAM CG8117 INTERGENIC
3R	18450175	3R_18450175_SNP [dm3] 3R_22624453_SNP [dm6]	T	G	4.070e^-5	0.655	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	10810457	3R_10810457_SNP [dm3] 3R_14984735_SNP [dm6]	G	C	4.086e^-5	0.655	INTERGENIC
2L	10725295	2L_10725295_SNP [dm3] 2L_10725295_SNP [dm6]	A	T	4.183e^-5	0.655	UPSTREAM CG6431 INTRON CG6431
2R	10332220	2R_10332220_SNP [dm3] 2R_14444715_SNP [dm6]	T	C	4.192e^-5	0.655	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	14898999	3R_14898999_SNP [dm3] 3R_19073277_SNP [dm6]	G	T	4.220e^-5	0.655	INTRON cdi
3L	7485253	3L_7485253_SNP [dm3] 3L_7492153_SNP [dm6]	C	T	4.226e^-5	0.655	SYNONYMOUS_CODING Cyp316a1
3L	5444828	3L_5444828_SNP [dm3] 3L_5451728_SNP [dm6]	A	T	4.271e^-5	0.655	INTERGENIC
X	13133369	X_13133369_SNP [dm3] X_13239336_SNP [dm6]	A	G	4.290e^-5	0.655	INTRON mew	TF binding site BDTNP1_TFBS_dl
3L	5444807	3L_5444807_SNP [dm3] 3L_5451707_SNP [dm6]	T	A	4.307e^-5	0.655	INTERGENIC
2L	16927298	2L_16927298_SNP [dm3] 2L_16927298_SNP [dm6]	T	A	4.324e^-5	0.655	INTERGENIC
X	13133375	X_13133375_SNP [dm3] X_13239342_SNP [dm6]	C	T	4.336e^-5	0.655	INTRON mew	TF binding site BDTNP1_TFBS_dl
2L	14376425	2L_14376425_SNP [dm3] 2L_14376425_SNP [dm6]	C	T	4.349e^-5	0.655	INTERGENIC
3L	5444810	3L_5444810_SNP [dm3] 3L_5451710_SNP [dm6]	G	T	4.375e^-5	0.655	INTERGENIC
X	13544957	X_13544957_SNP [dm3] X_13650924_SNP [dm6]	T	A	4.402e^-5	0.655	INTRON NFAT	TF binding site mE1_TFBS_HSA
3L	16673296	3L_16673296_DEL [dm3] 3L_16680196_DEL [dm6]	AA	A	4.528e^-5	0.662	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_dl
3L	16666928	3L_16666928_SNP [dm3] 3L_16673828_SNP [dm6]	C	A	4.547e^-5	0.662	UPSTREAM CG13032 & 1 other INTERGENIC	regulatory region REDfly_CRMs
3L	16814722	3L_16814722_SNP [dm3] 3L_16821622_SNP [dm6]	G	A	4.584e^-5	0.662	INTRON CG13024
3L	10287406	3L_10287406_SNP [dm3] 3L_10294306_SNP [dm6]	C	G	4.593e^-5	0.662	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11342082	3R_11342082_SNP [dm3] 3R_15516360_SNP [dm6]	C	T	4.746e^-5	0.679	INTERGENIC
2R	11440746	2R_11440746_SNP [dm3] 2R_15553241_SNP [dm6]	C	G	4.846e^-5	0.685	INTERGENIC
3L	7386768	3L_7386768_SNP [dm3] 3L_7393668_SNP [dm6]	G	A	4.886e^-5	0.685	SYNONYMOUS_CODING CG8563	TF binding site mE1_TFBS_cad
2R	10332217	2R_10332217_SNP [dm3] 2R_14444712_SNP [dm6]	T	G	4.982e^-5	0.685	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	10332219	2R_10332219_SNP [dm3] 2R_14444714_SNP [dm6]	C	G	4.982e^-5	0.685	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	10419451	3R_10419451_SNP [dm3] 3R_14593729_SNP [dm6]	T	C	5.010e^-5	0.685	INTRON stumps
3R	14899000	3R_14899000_SNP [dm3] 3R_19073278_SNP [dm6]	T	G	5.016e^-5	0.685	INTRON cdi
3L	5235579	3L_5235579_SNP [dm3] 3L_5242479_SNP [dm6]	G	T	5.098e^-5	0.685	INTRON shep
2L	21852896	2L_21852896_DEL [dm3] 2L_21852896_DEL [dm6]	ATGAACTT	A	5.121e^-5	0.685	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11343650	3R_11343650_SNP [dm3] 3R_15517928_SNP [dm6]	T	G	5.121e^-5	0.685	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7388971	3L_7388971_SNP [dm3] 3L_7395871_SNP [dm6]	C	T	5.178e^-5	0.688	SYNONYMOUS_CODING CG8563 UPSTREAM CG32379
3L	9052079	3L_9052079_SNP [dm3] 3L_9058979_SNP [dm6]	G	T	5.308e^-5	0.7	INTRON Argk
2L	1510210	2L_1510210_SNP [dm3] 2L_1510210_SNP [dm6]	T	C	5.344e^-5	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	7389348	3L_7389348_SNP [dm3] 3L_7396248_SNP [dm6]	C	G	5.460e^-5	0.701	UPSTREAM CG32379 DOWNSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	11917250	2L_11917250_SNP [dm3] 2L_11917250_SNP [dm6]	G	A	5.465e^-5	0.701	INTRON Pde1c
2L	14374948	2L_14374948_SNP [dm3] 2L_14374948_SNP [dm6]	A	G	5.489e^-5	0.701	INTERGENIC
3R	2279962	3R_2279962_SNP [dm3] 3R_6454240_SNP [dm6]	T	C	5.502e^-5	0.701	SYNONYMOUS_CODING CG9727
2L	10085352	2L_10085352_INS [dm3] 2L_10085352_INS [dm6]	G	GGG	5.577e^-5	0.703	INTRON CG44153
3L	5444803	3L_5444803_INS [dm3] 3L_5451703_INS [dm6]	C	AT	5.622e^-5	0.703	INTERGENIC
3L	3027371	3L_3027371_SNP [dm3] 3L_3027371_SNP [dm6]	T	C	5.658e^-5	0.703	UPSTREAM aly INTERGENIC
2R	11440754	2R_11440754_SNP [dm3] 2R_15553249_SNP [dm6]	C	G	5.667e^-5	0.703	INTERGENIC
3L	3795593	3L_3795593_SNP [dm3] 3L_3795593_SNP [dm6]	A	G	5.795e^-5	0.714	UPSTREAM CG32264 INTRON CG32264
3R	9768947	3R_9768947_SNP [dm3] 3R_13943225_SNP [dm6]	G	A	5.845e^-5	0.715	SYNONYMOUS_CODING Art9
3R	11343597	3R_11343597_SNP [dm3] 3R_15517875_SNP [dm6]	G	T	5.895e^-5	0.715	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20032572	2L_20032572_SNP [dm3] 2L_20032572_SNP [dm6]	A	T	5.923e^-5	0.715	INTRON sNPF
2R	17757444	2R_17757444_SNP [dm3] 2R_21869939_SNP [dm6]	G	A	5.958e^-5	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2612461	2L_2612461_SNP [dm3] 2L_2612461_SNP [dm6]	G	A	6.045e^-5	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8002571	2L_8002571_SNP [dm3] 2L_8002571_SNP [dm6]	T	A	6.070e^-5	0.716	INTRON Wwox
2R	12766168	2R_12766168_SNP [dm3] 2R_16878663_SNP [dm6]	A	C	6.144e^-5	0.716	INTRON CG8910
3R	24290214	3R_24290214_SNP [dm3] 3R_28464492_SNP [dm6]	G	A	6.149e^-5	0.716	INTRON beat-VI
2R	10006596	2R_10006596_SNP [dm3] 2R_14119091_SNP [dm6]	G	A	6.154e^-5	0.716	INTRON Prosap
2L	17805717	2L_17805717_SNP [dm3] 2L_17805717_SNP [dm6]	T	A	6.303e^-5	0.719	INTRON CadN2
3L	9852419	3L_9852419_SNP [dm3] 3L_9859319_SNP [dm6]	C	T	6.329e^-5	0.719	SYNONYMOUS_CODING CG10809 DOWNSTREAM iPLA2-VIA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7389325	3L_7389325_SNP [dm3] 3L_7396225_SNP [dm6]	T	G	6.336e^-5	0.719	UPSTREAM CG32379 DOWNSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7389330	3L_7389330_SNP [dm3] 3L_7396230_SNP [dm6]	T	A	6.336e^-5	0.719	UPSTREAM CG32379 DOWNSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10849822	3R_10849822_SNP [dm3] 3R_15024100_SNP [dm6]	C	A	6.462e^-5	0.729	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	20128985	2L_20128985_SNP [dm3] 2L_20128985_SNP [dm6]	A	T	6.577e^-5	0.732	INTERGENIC
2L	2735115	2L_2735115_SNP [dm3] 2L_2735115_SNP [dm6]	G	A	6.599e^-5	0.732	UPSTREAM CG31689 INTRON CG31689
X	592176	X_592176_SNP [dm3] X_698143_SNP [dm6]	A	G	6.623e^-5	0.732	INTRON sdk
2R	11385113	2R_11385113_SNP [dm3] 2R_15497608_SNP [dm6]	T	A	6.684e^-5	0.732	UPSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	25600038	3R_25600038_SNP [dm3] 3R_29774316_SNP [dm6]	G	A	6.689e^-5	0.732	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1055671	3L_1055671_SNP [dm3] 3L_1055671_SNP [dm6]	A	G	6.818e^-5	0.742	INTRON bab1
2R	11385114	2R_11385114_SNP [dm3] 2R_15497609_SNP [dm6]	G	T	6.873e^-5	0.743	UPSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	16758247	2R_16758247_SNP [dm3] 2R_20870742_SNP [dm6]	C	T	6.963e^-5	0.743	UPSTREAM Ipk1 DOWNSTREAM IM14 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	480288	X_480288_SNP [dm3] X_586255_SNP [dm6]	A	G	7.127e^-5	0.743	INTRON vnd & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11303552	3L_11303552_SNP [dm3] 3L_11310452_SNP [dm6]	T	C	7.128e^-5	0.743	INTERGENIC
3R	11772345	3R_11772345_SNP [dm3] 3R_15946623_SNP [dm6]	T	C	7.150e^-5	0.743	INTRON Sap47
2L	8174752	2L_8174752_INS [dm3] 2L_8174752_INS [dm6]	T	TTTAGAGCAACT...	7.172e^-5	0.743	INTRON Piezo	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	12478303	3L_12478303_SNP [dm3] 3L_12485203_SNP [dm6]	G	T	7.223e^-5	0.743	UPSTREAM CG33725 & 1 other INTRON CG33725	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14943709	3R_14943709_SNP [dm3] 3R_19117987_SNP [dm6]	T	C	7.300e^-5	0.743	INTRON CG6040
3L	10402767	3L_10402767_SNP [dm3] 3L_10409667_SNP [dm6]	C	T	7.316e^-5	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21852304	2L_21852304_SNP [dm3] 2L_21852304_SNP [dm6]	G	C	7.357e^-5	0.743	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2851701	2R_2851701_SNP [dm3] 2R_6964196_SNP [dm6]	T	G	7.413e^-5	0.743	INTRON mim & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9051840	3L_9051840_SNP [dm3] 3L_9058740_SNP [dm6]	C	A	7.636e^-5	0.743	INTRON Argk	TF binding site mE1_TFBS_Trl
2L	10085357	2L_10085357_SNP [dm3] 2L_10085357_SNP [dm6]	G	C	7.748e^-5	0.743	INTRON CG44153
3R	17010742	3R_17010742_SNP [dm3] 3R_21185020_SNP [dm6]	T	G	7.762e^-5	0.743	UTR_5_PRIME SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
X	18358953	X_18358953_SNP [dm3] X_18464920_SNP [dm6]	C	G	7.796e^-5	0.743	INTRON CG32547	TF binding site mE1_TFBS_chinmo
3L	16666725	3L_16666725_SNP [dm3] 3L_16673625_SNP [dm6]	T	G	7.880e^-5	0.743	UPSTREAM CG13032 & 1 other INTERGENIC	regulatory region REDfly_CRMs
3R	25455291	3R_25455291_SNP [dm3] 3R_29629569_SNP [dm6]	C	T	7.887e^-5	0.743	DOWNSTREAM Dop1R2 INTERGENIC
3R	24131797	3R_24131797_SNP [dm3] 3R_28306075_SNP [dm6]	A	G	7.908e^-5	0.743	INTERGENIC
3L	7390673	3L_7390673_SNP [dm3] 3L_7397573_SNP [dm6]	T	G	7.955e^-5	0.743	UPSTREAM CG8562 INTRON CG32379
3R	10215330	3R_10215330_SNP [dm3] 3R_14389608_SNP [dm6]	T	C	8.006e^-5	0.743	INTERGENIC
2L	20230716	2L_20230716_SNP [dm3] 2L_20230716_SNP [dm6]	A	G	8.016e^-5	0.743	INTERGENIC
2R	15058709	2R_15058709_DEL [dm3] 2R_19171204_DEL [dm6]	ACTGATATA	A	8.040e^-5	0.743	INTRON CG10737
3L	18082775	3L_18082775_SNP [dm3] 3L_18089675_SNP [dm6]	T	G	8.101e^-5	0.743	INTRON CG13698
3L	938513	3L_938513_SNP [dm3] 3L_938513_SNP [dm6]	C	T	8.180e^-5	0.743	INTRON Glut1
2L	2734988	2L_2734988_SNP [dm3] 2L_2734988_SNP [dm6]	A	G	8.184e^-5	0.743	UPSTREAM CG31689 INTRON CG31689
2L	19039382	2L_19039382_SNP [dm3] 2L_19039382_SNP [dm6]	G	T	8.203e^-5	0.743	SYNONYMOUS_CODING mib2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6441238	X_6441238_SNP [dm3] X_6547205_SNP [dm6]	C	T	8.260e^-5	0.743	INTRON CG34417	TF binding site mE1_TFBS_HSA
3R	10314647	3R_10314647_SNP [dm3] 3R_14488925_SNP [dm6]	T	G	8.342e^-5	0.743	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18359933	2R_18359933_SNP [dm3] 2R_22472428_SNP [dm6]	C	T	8.353e^-5	0.743	UTR_3_PRIME CG10384 DOWNSTREAM CG10384 & 1 other
2L	7913860	2L_7913860_SNP [dm3] 2L_7913860_SNP [dm6]	G	A	8.411e^-5	0.743	INTRON Snoo
2L	12727816	2L_12727816_SNP [dm3] 2L_12727816_SNP [dm6]	T	A	8.427e^-5	0.743	INTRON MRP
2L	16138180	2L_16138180_SNP [dm3] 2L_16138180_SNP [dm6]	A	G	8.470e^-5	0.743	INTERGENIC
3L	7392890	3L_7392890_SNP [dm3] 3L_7399790_SNP [dm6]	C	T	8.538e^-5	0.743	UTR_3_PRIME CG8562 UPSTREAM CG18417
2L	10896778	2L_10896778_SNP [dm3] 2L_10896778_SNP [dm6]	T	G	8.571e^-5	0.743	INTERGENIC
2R	16638684	2R_16638684_SNP [dm3] 2R_20751179_SNP [dm6]	G	C	8.573e^-5	0.743	NON_SYNONYMOUS_CODING CG34201 DOWNSTREAM dpr
2L	20294252	2L_20294252_SNP [dm3] 2L_20294252_SNP [dm6]	A	T	8.612e^-5	0.743	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	20328752	2L_20328752_DEL [dm3] 2L_20328752_DEL [dm6]	ACATG	A	8.676e^-5	0.743	INTRON spir	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	608490	X_608490_SNP [dm3] X_714457_SNP [dm6]	G	C	8.746e^-5	0.743	INTRON sdk
2R	7302842	2R_7302842_SNP [dm3] 2R_11415337_SNP [dm6]	G	T	8.754e^-5	0.743	UTR_3_PRIME CG7763 INTRON Drip
3L	7395670	3L_7395670_SNP [dm3] 3L_7402570_SNP [dm6]	C	A	8.849e^-5	0.743	SYNONYMOUS_CODING CG8560 DOWNSTREAM CG18417	TF binding site mE1_TFBS_HSA
X	13418559	X_13418559_SNP [dm3] X_13524526_SNP [dm6]	T	A	8.850e^-5	0.743	UTR_3_PRIME Neto
2L	8174810	2L_8174810_SNP [dm3] 2L_8174810_SNP [dm6]	A	T	8.903e^-5	0.743	INTRON Piezo	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8174814	2L_8174814_SNP [dm3] 2L_8174814_SNP [dm6]	T	A	8.903e^-5	0.743	INTRON Piezo	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8174831	2L_8174831_SNP [dm3] 2L_8174831_SNP [dm6]	C	A	8.903e^-5	0.743	INTRON Piezo	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	836391	2L_836391_SNP [dm3] 2L_836391_SNP [dm6]	T	C	8.936e^-5	0.743	INTRON drongo	TF binding site mE1_TFBS_chinmo
3L	10934361	3L_10934361_SNP [dm3] 3L_10941261_SNP [dm6]	G	A	8.957e^-5	0.743	INTERGENIC
3L	7904226	3L_7904226_SNP [dm3] 3L_7911126_SNP [dm6]	G	T	8.958e^-5	0.743	INTRON pbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7397462	3L_7397462_SNP [dm3] 3L_7404362_SNP [dm6]	A	C	9.039e^-5	0.743	UPSTREAM CG8560 INTERGENIC
3R	12909071	3R_12909071_SNP [dm3] 3R_17083349_SNP [dm6]	C	A	9.089e^-5	0.743	NON_SYNONYMOUS_CODING kuk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2801545	2L_2801545_SNP [dm3] 2L_2801545_SNP [dm6]	C	T	9.164e^-5	0.743	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16339125	2L_16339125_SNP [dm3] 2L_16339125_SNP [dm6]	C	A	9.168e^-5	0.743	INTRON CG42266
3R	2287287	3R_2287287_SNP [dm3] 3R_6461565_SNP [dm6]	A	T	9.285e^-5	0.743	INTERGENIC
2L	2125229	2L_2125229_SNP [dm3] 2L_2125229_SNP [dm6]	A	G	9.337e^-5	0.743	INTERGENIC
2L	5866581	2L_5866581_SNP [dm3] 2L_5866581_SNP [dm6]	G	C	9.375e^-5	0.743	INTRON rau	TF binding site BDTNP1_TFBS_da
2R	14237170	2R_14237170_SNP [dm3] 2R_18349665_SNP [dm6]	A	G	9.394e^-5	0.743	INTRON sbb
3L	7389138	3L_7389138_SNP [dm3] 3L_7396038_SNP [dm6]	T	A	9.446e^-5	0.743	UPSTREAM CG32379 DOWNSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14899036	3R_14899036_INS [dm3] 3R_19073314_INS [dm6]	TG	GTATAA	9.483e^-5	0.743	INTRON cdi
X	4651773	X_4651773_SNP [dm3] X_4757740_SNP [dm6]	T	C	9.512e^-5	0.743	INTERGENIC
2R	17242289	2R_17242289_SNP [dm3] 2R_21354784_SNP [dm6]	G	C	9.573e^-5	0.743	DOWNSTREAM cv-2 INTERGENIC
2L	15756527	2L_15756527_DEL [dm3] 2L_15756527_DEL [dm6]	TA	T	9.678e^-5	0.743	UTR_3_PRIME Gli DOWNSTREAM l_2_35Df
2L	15756533	2L_15756533_SNP [dm3] 2L_15756533_SNP [dm6]	C	A	9.678e^-5	0.743	UTR_3_PRIME Gli DOWNSTREAM l_2_35Df
X	3875217	X_3875217_SNP [dm3] X_3981184_SNP [dm6]	G	C	9.706e^-5	0.743	INTERGENIC
X	12730128	X_12730128_SNP [dm3] X_12836095_SNP [dm6]	T	A	9.720e^-5	0.743	INTRON Pde9
3L	7386979	3L_7386979_SNP [dm3] 3L_7393879_SNP [dm6]	G	C	9.836e^-5	0.743	NON_SYNONYMOUS_CODING CG8563	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11743909	3L_11743909_SNP [dm3] 3L_11750809_SNP [dm6]	A	T	9.844e^-5	0.743	UPSTREAM Gr68a INTRON CG6024
3L	7387267	3L_7387267_SNP [dm3] 3L_7394167_SNP [dm6]	C	T	9.849e^-5	0.743	SYNONYMOUS_CODING CG8563	TF binding site mE1_TFBS_cad
2R	11999642	2R_11999642_SNP [dm3] 2R_16112137_SNP [dm6]	C	G	9.889e^-5	0.743	NON_SYNONYMOUS_CODING Asph
3L	1055666	3L_1055666_SNP [dm3] 3L_1055666_SNP [dm6]	A	G	1.001e^-4	0.743	INTRON bab1
2R	10611584	2R_10611584_SNP [dm3] 2R_14724079_SNP [dm6]	A	T	1.004e^-4	0.743	INTERGENIC
2L	8371319	2L_8371319_INS [dm3] 2L_8371319_INS [dm6]	A	ATCTA	1.016e^-4	0.743	UPSTREAM CR45341 INTRON CG17292
3L	18214335	3L_18214335_SNP [dm3] 3L_18221235_SNP [dm6]	A	C	1.018e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21852904	2L_21852904_INS [dm3] 2L_21852904_INS [dm6]	G	GTCGTCGTATTA...	1.024e^-4	0.743	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2293179	3L_2293179_SNP [dm3] 3L_2293179_SNP [dm6]	A	C	1.025e^-4	0.743	INTRON MsR2
3L	15792903	3L_15792903_SNP [dm3] 3L_15799803_SNP [dm6]	G	A	1.032e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13231950	X_13231950_SNP [dm3] X_13337917_SNP [dm6]	A	T	1.035e^-4	0.743	UPSTREAM CG15747 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
X	15538071	X_15538071_SNP [dm3] X_15644038_SNP [dm6]	C	T	1.035e^-4	0.743	UPSTREAM CG8117 INTERGENIC
2L	6489970	2L_6489970_SNP [dm3] 2L_6489970_SNP [dm6]	G	T	1.037e^-4	0.743	SYNONYMOUS_CODING epsilonCOP DOWNSTREAM CG9548	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15994676	2L_15994676_SNP [dm3] 2L_15994676_SNP [dm6]	C	T	1.042e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22553271	3R_22553271_SNP [dm3] 3R_26727549_SNP [dm6]	C	G	1.043e^-4	0.743	UTR_5_PRIME CG14246 UPSTREAM CG14246 DOWNSTREAM CG14244 INTRON CG14246
2L	1457329	2L_1457329_SNP [dm3] 2L_1457329_SNP [dm6]	A	G	1.045e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25451217	3R_25451217_SNP [dm3] 3R_29625495_SNP [dm6]	G	A	1.046e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	22899207	3L_22899207_SNP [dm3] 3L_22906107_SNP [dm6]	T	C	1.048e^-4	0.743	DOWNSTREAM BoYb INTERGENIC	transposable element FlyBase
3L	7392852	3L_7392852_SNP [dm3] 3L_7399752_SNP [dm6]	A	T	1.058e^-4	0.743	UTR_3_PRIME CG8562 UPSTREAM CG18417
3L	7389328	3L_7389328_SNP [dm3] 3L_7396228_SNP [dm6]	T	C	1.069e^-4	0.743	UPSTREAM CG32379 DOWNSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9702490	3R_9702490_SNP [dm3] 3R_13876768_SNP [dm6]	C	T	1.073e^-4	0.743	INTRON E5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	12282905	2L_12282905_SNP [dm3] 2L_12282905_SNP [dm6]	T	A	1.077e^-4	0.743	INTRON aret
3L	7387526	3L_7387526_SNP [dm3] 3L_7394426_SNP [dm6]	T	C	1.082e^-4	0.743	INTRON CG8563
3L	7388435	3L_7388435_SNP [dm3] 3L_7395335_SNP [dm6]	A	T	1.082e^-4	0.743	INTRON CG8563
3L	12306884	3L_12306884_SNP [dm3] 3L_12313784_SNP [dm6]	C	T	1.084e^-4	0.743	INTERGENIC
2L	1633011	2L_1633011_SNP [dm3] 2L_1633011_SNP [dm6]	G	A	1.085e^-4	0.743	INTERGENIC
2L	11288345	2L_11288345_SNP [dm3] 2L_11288345_SNP [dm6]	T	A	1.094e^-4	0.743	INTERGENIC
3L	1527925	3L_1527925_SNP [dm3] 3L_1527925_SNP [dm6]	C	A	1.115e^-4	0.743	SYNONYMOUS_CODING CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6635756	2R_6635756_SNP [dm3] 2R_10748251_SNP [dm6]	A	G	1.120e^-4	0.743	INTRON CG33144
2L	3544271	2L_3544271_SNP [dm3] 2L_3544271_SNP [dm6]	G	T	1.128e^-4	0.743	INTRON drm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2498298	2L_2498298_SNP [dm3] 2L_2498298_SNP [dm6]	C	T	1.133e^-4	0.743	UTR_3_PRIME oaf DOWNSTREAM oaf
3L	16078609	3L_16078609_SNP [dm3] 3L_16085509_SNP [dm6]	A	G	1.134e^-4	0.743	UTR_3_PRIME Taspase1 DOWNSTREAM Taspase1 & 1 other
3R	17555389	3R_17555389_SNP [dm3] 3R_21729667_SNP [dm6]	T	C	1.140e^-4	0.743	EXON CR43096
3R	14287653	3R_14287653_SNP [dm3] 3R_18461931_SNP [dm6]	T	A	1.150e^-4	0.743	INTRON fru
3L	7390683	3L_7390683_SNP [dm3] 3L_7397583_SNP [dm6]	G	C	1.152e^-4	0.743	UPSTREAM CG8562 INTRON CG32379
3L	7390686	3L_7390686_SNP [dm3] 3L_7397586_SNP [dm6]	A	G	1.152e^-4	0.743	UPSTREAM CG8562 INTRON CG32379
3L	7390694	3L_7390694_SNP [dm3] 3L_7397594_SNP [dm6]	G	A	1.152e^-4	0.743	UPSTREAM CG8562 INTRON CG32379
3L	15506290	3L_15506290_DEL [dm3] 3L_15513190_DEL [dm6]	AA	A	1.165e^-4	0.743	UTR_3_PRIME Eip71CD
3L	12173728	3L_12173728_SNP [dm3] 3L_12180628_SNP [dm6]	T	C	1.165e^-4	0.743	INTRON CAH2
3R	25461254	3R_25461254_SNP [dm3] 3R_29635532_SNP [dm6]	T	C	1.170e^-4	0.743	INTRON Dop1R2
2R	17391346	2R_17391346_SNP [dm3] 2R_21503841_SNP [dm6]	G	A	1.178e^-4	0.743	INTRON MESK2	TF binding site mE1_TFBS_inv
3R	12622247	3R_12622247_SNP [dm3] 3R_16796525_SNP [dm6]	G	T	1.179e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10813788	3L_10813788_SNP [dm3] 3L_10820688_SNP [dm6]	C	T	1.182e^-4	0.743	INTERGENIC
2R	9253612	2R_9253612_SNP [dm3] 2R_13366107_SNP [dm6]	C	T	1.189e^-4	0.743	INTERGENIC
3R	14041209	3R_14041209_SNP [dm3] 3R_18215487_SNP [dm6]	A	G	1.190e^-4	0.743	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC
3R	14041211	3R_14041211_SNP [dm3] 3R_18215489_SNP [dm6]	T	G	1.190e^-4	0.743	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC
3L	15506299	3L_15506299_SNP [dm3] 3L_15513199_SNP [dm6]	A	C	1.193e^-4	0.743	UTR_3_PRIME Eip71CD
3R	12203234	3R_12203234_SNP [dm3] 3R_16377512_SNP [dm6]	G	A	1.199e^-4	0.743	SYNONYMOUS_CODING ss	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
4	121889	4_121889_SNP [dm3] 4_101263_SNP [dm6]	C	A	1.205e^-4	0.743	UTR_3_PRIME pan INTRON pan	transposable element FlyBase
3R	2324575	3R_2324575_SNP [dm3] 3R_6498853_SNP [dm6]	T	A	1.208e^-4	0.743	INTERGENIC
3L	7613878	3L_7613878_SNP [dm3] 3L_7620778_SNP [dm6]	A	T	1.214e^-4	0.743	INTRON CG33275
2L	1077929	2L_1077929_SNP [dm3] 2L_1077929_SNP [dm6]	A	T	1.222e^-4	0.743	UPSTREAM ast & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
3L	7387484	3L_7387484_SNP [dm3] 3L_7394384_SNP [dm6]	A	T	1.222e^-4	0.743	INTRON CG8563	TF binding site mE1_TFBS_cad
3L	7388568	3L_7388568_SNP [dm3] 3L_7395468_SNP [dm6]	A	G	1.222e^-4	0.743	UPSTREAM CG32379 INTRON CG8563
2R	6226803	2R_6226803_SNP [dm3] 2R_10339298_SNP [dm6]	T	C	1.233e^-4	0.743	SPLICE_SITE_REGION CG42732 INTRON CG42732
2L	6525314	2L_6525314_SNP [dm3] 2L_6525314_SNP [dm6]	A	C	1.243e^-4	0.743	INTRON CG31637
3L	20587062	3L_20587062_SNP [dm3] 3L_20593962_SNP [dm6]	T	C	1.245e^-4	0.743	INTERGENIC
2L	8373331	2L_8373331_SNP [dm3] 2L_8373331_SNP [dm6]	C	T	1.250e^-4	0.743	INTRON CG17292	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3L	16874599	3L_16874599_SNP [dm3] 3L_16881499_SNP [dm6]	A	T	1.251e^-4	0.743	INTRON Lmpt
3L	7388559	3L_7388559_SNP [dm3] 3L_7395459_SNP [dm6]	A	C	1.252e^-4	0.743	UPSTREAM CG32379 INTRON CG8563
2R	5110371	2R_5110371_SNP [dm3] 2R_9222866_SNP [dm6]	T	A	1.257e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9738792	3R_9738792_SNP [dm3] 3R_13913070_SNP [dm6]	G	C	1.268e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9642883	2L_9642883_SNP [dm3] 2L_9642883_SNP [dm6]	C	A	1.268e^-4	0.743	SPLICE_SITE_REGION Apoltp INTRON Apoltp	TF binding site mE1_TFBS_chinmo
3R	9868203	3R_9868203_SNP [dm3] 3R_14042481_SNP [dm6]	G	C	1.269e^-4	0.743	INTERGENIC
2R	19181656	2R_19181656_SNP [dm3] 2R_23294133_SNP [dm6]	C	G	1.269e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	607103	X_607103_SNP [dm3] X_713070_SNP [dm6]	T	C	1.270e^-4	0.743	INTRON sdk
4	86109	4_86109_SNP [dm3] 4_65483_SNP [dm6]	T	A	1.271e^-4	0.743	UTR_3_PRIME RpS3A DOWNSTREAM snoRNA:CD-24 & 1 other
2L	13433876	2L_13433876_INS [dm3] 2L_13433876_INS [dm6]	T	TTTAAAGCTTTTAGTAACCA...	1.275e^-4	0.743	INTRON CG42784	TF binding site mE1_TFBS_cad
2R	18542590	2R_18542590_SNP [dm3] 2R_22655085_SNP [dm6]	G	A	1.288e^-4	0.743	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20331357	2L_20331357_SNP [dm3] 2L_20331357_SNP [dm6]	T	G	1.292e^-4	0.743	INTRON spir
3R	11341821	3R_11341821_SNP [dm3] 3R_15516099_SNP [dm6]	C	T	1.296e^-4	0.743	INTERGENIC
3L	3989944	3L_3989944_INS [dm3] 3L_3989944_INS [dm6]	A	ACCTTACTTCA...	1.297e^-4	0.743	UTR_3_PRIME scrt
3L	3989960	3L_3989960_SNP [dm3] 3L_3989960_SNP [dm6]	C	T	1.297e^-4	0.743	UTR_3_PRIME scrt
3L	7830609	3L_7830609_SNP [dm3] 3L_7837509_SNP [dm6]	A	G	1.303e^-4	0.743	INTRON Pdp1	regulatory region REDfly_CRMs
3R	2281801	3R_2281801_SNP [dm3] 3R_6456079_SNP [dm6]	T	C	1.312e^-4	0.743	UTR_5_PRIME CG9727	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	14287649	3R_14287649_SNP [dm3] 3R_18461927_SNP [dm6]	C	A	1.317e^-4	0.743	INTRON fru
3R	14287651	3R_14287651_SNP [dm3] 3R_18461929_SNP [dm6]	G	A	1.317e^-4	0.743	INTRON fru
2L	5147461	2L_5147461_SNP [dm3] 2L_5147461_SNP [dm6]	C	A	1.318e^-4	0.743	INTRON Msp300
2L	16930700	2L_16930700_SNP [dm3] 2L_16930700_SNP [dm6]	C	T	1.323e^-4	0.743	INTERGENIC
2L	14374736	2L_14374736_SNP [dm3] 2L_14374736_SNP [dm6]	G	A	1.334e^-4	0.743	INTERGENIC
3L	18068631	3L_18068631_SNP [dm3] 3L_18075531_SNP [dm6]	G	A	1.343e^-4	0.743	UPSTREAM CR45391 INTERGENIC
X	596281	X_596281_SNP [dm3] X_702248_SNP [dm6]	C	T	1.346e^-4	0.743	INTRON sdk	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	10419458	3R_10419458_INS [dm3] 3R_14593736_INS [dm6]	C	CGCC	1.350e^-4	0.743	INTRON stumps
3R	12908911	3R_12908911_SNP [dm3] 3R_17083189_SNP [dm6]	G	C	1.355e^-4	0.743	NON_SYNONYMOUS_CODING kuk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11343678	3R_11343678_SNP [dm3] 3R_15517956_SNP [dm6]	G	A	1.363e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11288289	2L_11288289_SNP [dm3] 2L_11288289_SNP [dm6]	A	C	1.364e^-4	0.743	INTERGENIC
2L	20331596	2L_20331596_SNP [dm3] 2L_20331596_SNP [dm6]	G	C	1.366e^-4	0.743	INTRON spir
2L	12487807	2L_12487807_SNP [dm3] 2L_12487807_SNP [dm6]	A	T	1.368e^-4	0.743	INTRON bun
3L	13182162	3L_13182162_SNP [dm3] 3L_13189062_SNP [dm6]	A	T	1.369e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13877013	3L_13877013_SNP [dm3] 3L_13883913_SNP [dm6]	C	T	1.371e^-4	0.743	DOWNSTREAM CG13737 INTRON dysc
2L	9816550	2L_9816550_SNP [dm3] 2L_9816550_SNP [dm6]	A	C	1.387e^-4	0.743	INTRON nAChRalpha6
X	704481	X_704481_SNP [dm3] X_810448_SNP [dm6]	T	C	1.388e^-4	0.743	SYNONYMOUS_CODING CG43867	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3027312	3L_3027312_DEL [dm3] 3L_3027312_DEL [dm6]	AA	A	1.406e^-4	0.743	UPSTREAM aly INTERGENIC
2L	3238065	2L_3238065_INS [dm3] 2L_3238065_INS [dm6]	T	TTTT	1.409e^-4	0.743	INTERGENIC
2R	10449412	2R_10449412_SNP [dm3] 2R_14561907_SNP [dm6]	C	G	1.410e^-4	0.743	INTRON ttv
3R	2335120	3R_2335120_INS [dm3] 3R_6509398_INS [dm6]	A	AA	1.412e^-4	0.743	INTERGENIC
2L	1428587	2L_1428587_SNP [dm3] 2L_1428587_SNP [dm6]	T	C	1.414e^-4	0.743	UTR_5_PRIME CG43401
2L	11288236	2L_11288236_DEL [dm3] 2L_11288236_DEL [dm6]	GG	A	1.430e^-4	0.743	INTERGENIC
2L	11288293	2L_11288293_SNP [dm3] 2L_11288293_SNP [dm6]	A	G	1.430e^-4	0.743	INTERGENIC
2L	11288294	2L_11288294_SNP [dm3] 2L_11288294_SNP [dm6]	T	G	1.430e^-4	0.743	INTERGENIC
3R	10849884	3R_10849884_SNP [dm3] 3R_15024162_SNP [dm6]	C	A	1.432e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	848591	2L_848591_SNP [dm3] 2L_848591_SNP [dm6]	T	C	1.433e^-4	0.743	INTRON drongo	TF binding site mE1_TFBS_sens
2L	1428555	2L_1428555_SNP [dm3] 2L_1428555_SNP [dm6]	C	G	1.436e^-4	0.743	UTR_5_PRIME CG43401	TF binding site mE1_TFBS_cad
3R	2276781	3R_2276781_SNP [dm3] 3R_6451059_SNP [dm6]	G	A	1.437e^-4	0.743	UTR_3_PRIME CG9727 DOWNSTREAM CG9727	TF binding site mE1_TFBS_cad
2L	20336415	2L_20336415_SNP [dm3] 2L_20336415_SNP [dm6]	C	G	1.440e^-4	0.743	INTRON spir
2L	20294295	2L_20294295_SNP [dm3] 2L_20294295_SNP [dm6]	G	C	1.443e^-4	0.743	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	1428571	2L_1428571_SNP [dm3] 2L_1428571_SNP [dm6]	A	T	1.443e^-4	0.743	UTR_5_PRIME CG43401	TF binding site mE1_TFBS_cad
2R	13212307	2R_13212307_SNP [dm3] 2R_17324802_SNP [dm6]	T	A	1.450e^-4	0.743	INTRON mbl
2L	20317865	2L_20317865_SNP [dm3] 2L_20317865_SNP [dm6]	A	G	1.453e^-4	0.743	UPSTREAM CR43606 INTRON spir
2L	1159550	2L_1159550_SNP [dm3] 2L_1159550_SNP [dm6]	T	C	1.462e^-4	0.743	UPSTREAM CR43767 DOWNSTREAM CG5080 INTRON Tango14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16666710	3L_16666710_SNP [dm3] 3L_16673610_SNP [dm6]	A	T	1.462e^-4	0.743	UPSTREAM CG13032 & 1 other INTERGENIC	regulatory region REDfly_CRMs
3L	16668713	3L_16668713_SNP [dm3] 3L_16675613_SNP [dm6]	G	T	1.462e^-4	0.743	SYNONYMOUS_CODING CG13032 DOWNSTREAM Lasp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20032602	2L_20032602_SNP [dm3] 2L_20032602_SNP [dm6]	G	T	1.463e^-4	0.743	INTRON sNPF
2L	20139699	2L_20139699_SNP [dm3] 2L_20139699_SNP [dm6]	T	C	1.471e^-4	0.743	INTERGENIC
3R	12363223	3R_12363223_DEL [dm3] 3R_16537501_DEL [dm6]	TT	T	1.477e^-4	0.743	INTRON CG42342
2L	9440882	2L_9440882_SNP [dm3] 2L_9440882_SNP [dm6]	G	A	1.482e^-4	0.743	UPSTREAM CG33723 INTRON numb
3L	16674389	3L_16674389_SNP [dm3] 3L_16681289_SNP [dm6]	G	A	1.490e^-4	0.743	SYNONYMOUS_CODING Lasp UTR_5_PRIME CG43954	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25451604	3R_25451604_SNP [dm3] 3R_29625882_SNP [dm6]	G	A	1.497e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	4651672	X_4651672_SNP [dm3] X_4757639_SNP [dm6]	T	C	1.501e^-4	0.743	INTERGENIC
X	5475941	X_5475941_SNP [dm3] X_5581908_SNP [dm6]	T	A	1.502e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10006851	2R_10006851_SNP [dm3] 2R_14119346_SNP [dm6]	A	T	1.503e^-4	0.743	INTRON Prosap
3L	18820962	3L_18820962_SNP [dm3] 3L_18827862_SNP [dm6]	C	T	1.519e^-4	0.743	SYNONYMOUS_CODING Cat DOWNSTREAM Indy	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	16929848	2L_16929848_SNP [dm3] 2L_16929848_SNP [dm6]	C	G	1.529e^-4	0.743	INTERGENIC
2R	18542583	2R_18542583_SNP [dm3] 2R_22655078_SNP [dm6]	A	G	1.535e^-4	0.743	SYNONYMOUS_CODING CG30196 UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6980550	2L_6980550_SNP [dm3] 2L_6980550_SNP [dm6]	T	A	1.538e^-4	0.743	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16888721	X_16888721_SNP [dm3] X_16994688_SNP [dm6]	G	A	1.541e^-4	0.743	INTRON CG45002
3L	6744585	3L_6744585_SNP [dm3] 3L_6751485_SNP [dm6]	T	C	1.542e^-4	0.743	INTRON velo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	20117607	2L_20117607_SNP [dm3] 2L_20117607_SNP [dm6]	G	A	1.542e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3R	9772605	3R_9772605_SNP [dm3] 3R_13946883_SNP [dm6]	G	A	1.543e^-4	0.743	INTERGENIC
X	3529509	X_3529509_SNP [dm3] X_3635476_SNP [dm6]	C	T	1.554e^-4	0.743	INTRON AstA-R1
2R	9514048	2R_9514048_SNP [dm3] 2R_13626543_SNP [dm6]	A	G	1.555e^-4	0.743	INTRON fas
3L	18220346	3L_18220346_SNP [dm3] 3L_18227246_SNP [dm6]	A	T	1.566e^-4	0.743	INTERGENIC
3L	18218476	3L_18218476_SNP [dm3] 3L_18225376_SNP [dm6]	T	G	1.571e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med
2L	11881231	2L_11881231_SNP [dm3] 2L_11881231_SNP [dm6]	T	C	1.576e^-4	0.743	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16888802	X_16888802_SNP [dm3] X_16994769_SNP [dm6]	G	C	1.588e^-4	0.743	INTRON CG45002
2L	1712706	2L_1712706_SNP [dm3] 2L_1712706_SNP [dm6]	C	A	1.598e^-4	0.743	SYNONYMOUS_CODING frtz	TF binding site mE1_TFBS_chinmo
X	13849736	X_13849736_SNP [dm3] X_13955703_SNP [dm6]	C	T	1.611e^-4	0.743	INTRON mamo & 1 other
2R	16040583	2R_16040583_SNP [dm3] 2R_20153078_SNP [dm6]	C	A	1.615e^-4	0.743	INTERGENIC
2R	16040762	2R_16040762_SNP [dm3] 2R_20153257_SNP [dm6]	T	C	1.615e^-4	0.743	INTERGENIC
2R	10475447	2R_10475447_SNP [dm3] 2R_14587942_SNP [dm6]	A	G	1.617e^-4	0.743	DOWNSTREAM ttv INTERGENIC
3L	9864719	3L_9864719_SNP [dm3] 3L_9871619_SNP [dm6]	A	G	1.618e^-4	0.743	DOWNSTREAM CG8108 INTERGENIC
3L	22863813	3L_22863813_SNP [dm3] 3L_22870713_SNP [dm6]	T	C	1.638e^-4	0.743	INTRON Arf79F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	22863814	3L_22863814_SNP [dm3] 3L_22870714_SNP [dm6]	G	T	1.638e^-4	0.743	INTRON Arf79F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	1803397	3L_1803397_SNP [dm3] 3L_1803397_SNP [dm6]	A	G	1.638e^-4	0.743	UPSTREAM JTBR INTRON CG42676	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20294103	2L_20294103_SNP [dm3] 2L_20294103_SNP [dm6]	T	C	1.640e^-4	0.743	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	13849737	X_13849737_SNP [dm3] X_13955704_SNP [dm6]	C	A	1.661e^-4	0.743	INTRON mamo & 1 other
3L	16874520	3L_16874520_SNP [dm3] 3L_16881420_SNP [dm6]	A	T	1.662e^-4	0.743	INTRON Lmpt
3R	12897186	3R_12897186_SNP [dm3] 3R_17071464_SNP [dm6]	T	A	1.667e^-4	0.743	SYNONYMOUS_CODING Ns1
3R	12897210	3R_12897210_SNP [dm3] 3R_17071488_SNP [dm6]	G	A	1.667e^-4	0.743	SYNONYMOUS_CODING Ns1
2R	9257161	2R_9257161_SNP [dm3] 2R_13369656_SNP [dm6]	C	A	1.668e^-4	0.743	INTERGENIC
2L	6835762	2L_6835762_SNP [dm3] 2L_6835762_SNP [dm6]	C	A	1.668e^-4	0.743	INTRON sens-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15048116	3R_15048116_SNP [dm3] 3R_19222394_SNP [dm6]	T	C	1.671e^-4	0.743	INTRON vib
2L	16138006	2L_16138006_SNP [dm3] 2L_16138006_SNP [dm6]	C	A	1.676e^-4	0.743	INTERGENIC
2R	2570058	2R_2570058_SNP [dm3] 2R_6682553_SNP [dm6]	C	T	1.680e^-4	0.743	UPSTREAM CG15909 DOWNSTREAM CR44164 INTRON CG9422 EXON CR44165
3L	10444654	3L_10444654_SNP [dm3] 3L_10451554_SNP [dm6]	A	C	1.680e^-4	0.743	INTERGENIC
X	5221672	X_5221672_SNP [dm3] X_5327639_SNP [dm6]	C	A	1.688e^-4	0.743	SYNONYMOUS_CODING CG3309 DOWNSTREAM Mcm3	TF binding site mE1_TFBS_chinmo
2R	11448981	2R_11448981_SNP [dm3] 2R_15561476_SNP [dm6]	A	T	1.692e^-4	0.743	INTRON CG12963
2L	11288275	2L_11288275_SNP [dm3] 2L_11288275_SNP [dm6]	T	C	1.707e^-4	0.743	INTERGENIC
2R	18358299	2R_18358299_SNP [dm3] 2R_22470794_SNP [dm6]	T	C	1.710e^-4	0.743	SYNONYMOUS_CODING CG10384	TF binding site mE1_TFBS_chinmo
2R	15169065	2R_15169065_SNP [dm3] 2R_19281560_SNP [dm6]	C	A	1.710e^-4	0.743	UTR_3_PRIME CG11906 DOWNSTREAM rib
2R	16040804	2R_16040804_DEL [dm3] 2R_20153299_DEL [dm6]	GGT	G	1.717e^-4	0.743	INTERGENIC
X	11023792	X_11023792_SNP [dm3] X_11129759_SNP [dm6]	T	G	1.721e^-4	0.743	UTR_3_PRIME Klp10A UPSTREAM Gtp-bp DOWNSTREAM Klp10A	regulatory region REDfly_CRMs
3L	13450676	3L_13450676_SNP [dm3] 3L_13457576_SNP [dm6]	T	C	1.733e^-4	0.743	UPSTREAM CG10116 INTRON CG10738	TF binding site mE1_TFBS_cad
2R	7302852	2R_7302852_SNP [dm3] 2R_11415347_SNP [dm6]	T	G	1.742e^-4	0.743	UTR_3_PRIME CG7763 DOWNSTREAM CG7763 INTRON Drip
3R	9702874	3R_9702874_SNP [dm3] 3R_13877152_SNP [dm6]	T	C	1.743e^-4	0.743	UTR_5_PRIME E5	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	480598	X_480598_SNP [dm3] X_586565_SNP [dm6]	T	G	1.749e^-4	0.743	INTRON vnd & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12723854	2L_12723854_SNP [dm3] 2L_12723854_SNP [dm6]	A	G	1.754e^-4	0.743	SYNONYMOUS_CODING MRP	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_sens
2R	20686725	2R_20686725_SNP [dm3] 2R_24799202_SNP [dm6]	C	T	1.755e^-4	0.743	SYNONYMOUS_CODING CG3611 DOWNSTREAM CG12849	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11295014	2L_11295014_SNP [dm3] 2L_11295014_SNP [dm6]	T	A	1.771e^-4	0.743	INTERGENIC
2L	10892618	2L_10892618_SNP [dm3] 2L_10892618_SNP [dm6]	G	C	1.773e^-4	0.743	INTERGENIC
3L	16666709	3L_16666709_SNP [dm3] 3L_16673609_SNP [dm6]	G	T	1.782e^-4	0.743	UPSTREAM CG13032 & 1 other INTERGENIC	regulatory region REDfly_CRMs
2L	20327389	2L_20327389_SNP [dm3] 2L_20327389_SNP [dm6]	A	C	1.785e^-4	0.743	INTRON spir
2L	20328771	2L_20328771_SNP [dm3] 2L_20328771_SNP [dm6]	G	A	1.785e^-4	0.743	INTRON spir	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	20336245	2L_20336245_SNP [dm3] 2L_20336245_SNP [dm6]	G	A	1.790e^-4	0.743	INTRON spir
3R	9701896	3R_9701896_SNP [dm3] 3R_13876174_SNP [dm6]	T	C	1.796e^-4	0.743	INTRON E5	TF binding site BDTNP1_TFBS_dl
2L	11295577	2L_11295577_SNP [dm3] 2L_11295577_SNP [dm6]	A	G	1.797e^-4	0.743	INTERGENIC
3R	2264922	3R_2264922_SNP [dm3] 3R_6439200_SNP [dm6]	C	T	1.800e^-4	0.743	INTRON gpp
3R	2273966	3R_2273966_SNP [dm3] 3R_6448244_SNP [dm6]	A	T	1.800e^-4	0.743	UTR_3_PRIME gpp DOWNSTREAM gpp	TF binding site mE1_TFBS_zfh1
3R	2282737	3R_2282737_SNP [dm3] 3R_6457015_SNP [dm6]	G	T	1.800e^-4	0.743	UPSTREAM Zif & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	2288776	3R_2288776_SNP [dm3] 3R_6463054_SNP [dm6]	C	A	1.800e^-4	0.743	INTERGENIC
2L	16026815	2L_16026815_SNP [dm3] 2L_16026815_SNP [dm6]	C	T	1.803e^-4	0.743	INTRON beat-Ic
2L	16026818	2L_16026818_SNP [dm3] 2L_16026818_SNP [dm6]	C	A	1.803e^-4	0.743	INTRON beat-Ic
2L	16026820	2L_16026820_SNP [dm3] 2L_16026820_SNP [dm6]	T	A	1.803e^-4	0.743	INTRON beat-Ic
2L	16026821	2L_16026821_SNP [dm3] 2L_16026821_SNP [dm6]	G	A	1.803e^-4	0.743	INTRON beat-Ic
2L	16026823	2L_16026823_SNP [dm3] 2L_16026823_SNP [dm6]	C	G	1.803e^-4	0.743	INTRON beat-Ic
2L	16026846	2L_16026846_SNP [dm3] 2L_16026846_SNP [dm6]	T	C	1.803e^-4	0.743	INTRON beat-Ic
3L	12851713	3L_12851713_SNP [dm3] 3L_12858613_SNP [dm6]	T	G	1.806e^-4	0.743	SYNONYMOUS_CODING CG32107
3R	18466880	3R_18466880_SNP [dm3] 3R_22641158_SNP [dm6]	C	T	1.809e^-4	0.743	INTRON CG45058
2L	12768826	2L_12768826_SNP [dm3] 2L_12768826_SNP [dm6]	T	C	1.809e^-4	0.743	INTERGENIC
2R	14262132	2R_14262132_SNP [dm3] 2R_18374627_SNP [dm6]	G	T	1.810e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3730590	2R_3730590_SNP [dm3] 2R_7843085_SNP [dm6]	G	A	1.811e^-4	0.743	SYNONYMOUS_CODING Dgk	TF binding site mE1_TFBS_chinmo
X	596041	X_596041_SNP [dm3] X_702008_SNP [dm6]	T	C	1.813e^-4	0.743	INTRON sdk
2L	17995135	2L_17995135_SNP [dm3] 2L_17995135_SNP [dm6]	A	C	1.814e^-4	0.743	UPSTREAM CR44767 INTERGENIC
3R	14177682	3R_14177682_INS [dm3] 3R_18351960_INS [dm6]	T	TT	1.817e^-4	0.743	INTRON CG15803
2L	11296706	2L_11296706_SNP [dm3] 2L_11296706_SNP [dm6]	A	C	1.821e^-4	0.743	INTERGENIC
3R	10323870	3R_10323870_SNP [dm3] 3R_14498148_SNP [dm6]	C	T	1.822e^-4	0.743	INTRON CR44177	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	15538023	X_15538023_SNP [dm3] X_15643990_SNP [dm6]	C	A	1.839e^-4	0.743	UPSTREAM CG8117 INTERGENIC
3L	7390249	3L_7390249_SNP [dm3] 3L_7397149_SNP [dm6]	A	C	1.849e^-4	0.743	NON_SYNONYMOUS_CODING CG32379
3L	7390266	3L_7390266_SNP [dm3] 3L_7397166_SNP [dm6]	A	G	1.849e^-4	0.743	NON_SYNONYMOUS_CODING CG32379
2R	6460935	2R_6460935_SNP [dm3] 2R_10573430_SNP [dm6]	A	T	1.850e^-4	0.743	INTRON psq
X	13968698	X_13968698_INS [dm3] X_14074665_INS [dm6]	G	GCTG	1.851e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6624865	X_6624865_SNP [dm3] X_6730832_SNP [dm6]	G	C	1.853e^-4	0.743	UPSTREAM CG3168 INTRON CG3168
2L	11288248	2L_11288248_SNP [dm3] 2L_11288248_SNP [dm6]	T	C	1.856e^-4	0.743	INTERGENIC
2L	11288249	2L_11288249_SNP [dm3] 2L_11288249_SNP [dm6]	T	A	1.856e^-4	0.743	INTERGENIC
X	9008631	X_9008631_SNP [dm3] X_9114598_SNP [dm6]	T	C	1.856e^-4	0.743	INTRON AP-1gamma	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20709612	2L_20709612_SNP [dm3] 2L_20709612_SNP [dm6]	G	T	1.857e^-4	0.743	UPSTREAM CR44187 INTRON Hr38
2R	10197115	2R_10197115_SNP [dm3] 2R_14309610_SNP [dm6]	A	T	1.858e^-4	0.743	INTRON Shroom	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
2L	20964233	2L_20964233_SNP [dm3] 2L_20964233_SNP [dm6]	T	A	1.859e^-4	0.743	INTERGENIC
2L	14082127	2L_14082127_SNP [dm3] 2L_14082127_SNP [dm6]	G	T	1.859e^-4	0.743	INTRON nAChRalpha5	TF binding site mE1_TFBS_zfh1
2R	15169040	2R_15169040_SNP [dm3] 2R_19281535_SNP [dm6]	T	A	1.859e^-4	0.743	UTR_3_PRIME CG11906 DOWNSTREAM rib
2R	15169042	2R_15169042_SNP [dm3] 2R_19281537_SNP [dm6]	A	T	1.859e^-4	0.743	UTR_3_PRIME CG11906 DOWNSTREAM rib
3R	14287646	3R_14287646_INS [dm3] 3R_18461924_INS [dm6]	C	TA	1.860e^-4	0.743	INTRON fru
X	13447037	X_13447037_SNP [dm3] X_13553004_SNP [dm6]	A	C	1.862e^-4	0.743	UTR_3_PRIME CG11816 INTRON CG11816
3L	14875583	3L_14875583_SNP [dm3] 3L_14882483_SNP [dm6]	T	C	1.870e^-4	0.743	DOWNSTREAM CG17839 INTERGENIC
3L	16874510	3L_16874510_SNP [dm3] 3L_16881410_SNP [dm6]	T	A	1.883e^-4	0.743	INTRON Lmpt
3R	9702496	3R_9702496_SNP [dm3] 3R_13876774_SNP [dm6]	C	A	1.890e^-4	0.743	INTRON E5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	11925889	3L_11925889_SNP [dm3] 3L_11932789_SNP [dm6]	A	C	1.892e^-4	0.743	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13433764	2L_13433764_SNP [dm3] 2L_13433764_SNP [dm6]	A	T	1.893e^-4	0.743	INTRON CG42784
3R	14943798	3R_14943798_SNP [dm3] 3R_19118076_SNP [dm6]	T	C	1.894e^-4	0.743	INTRON CG6040
2L	20327422	2L_20327422_SNP [dm3] 2L_20327422_SNP [dm6]	T	C	1.898e^-4	0.743	INTRON spir
2R	4240290	2R_4240290_SNP [dm3] 2R_8352785_SNP [dm6]	C	A	1.912e^-4	0.743	INTRON pdm3
2R	18272025	2R_18272025_SNP [dm3] 2R_22384520_SNP [dm6]	T	A	1.913e^-4	0.743	INTRON CG13506	TF binding site mE1_TFBS_Trl
2R	9257134	2R_9257134_SNP [dm3] 2R_13369629_SNP [dm6]	A	T	1.914e^-4	0.743	INTERGENIC
3R	12909192	3R_12909192_SNP [dm3] 3R_17083470_SNP [dm6]	A	T	1.915e^-4	0.743	SYNONYMOUS_CODING kuk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16811228	3R_16811228_SNP [dm3] 3R_20985506_SNP [dm6]	A	G	1.920e^-4	0.743	UPSTREAM Calx DOWNSTREAM CG43446 INTRON Calx
3R	2486350	3R_2486350_DEL [dm3] 3R_6660628_DEL [dm6]	TT	T	1.925e^-4	0.743	UPSTREAM agt DOWNSTREAM lab INTERGENIC
2L	7380345	2L_7380345_SNP [dm3] 2L_7380345_SNP [dm6]	T	C	1.928e^-4	0.743	SYNONYMOUS_CODING ninaC
X	8471036	X_8471036_SNP [dm3] X_8577003_SNP [dm6]	G	T	1.930e^-4	0.743	INTRON CG12065
2L	17797240	2L_17797240_SNP [dm3] 2L_17797240_SNP [dm6]	C	A	1.931e^-4	0.743	INTRON CadN2
2L	8742387	2L_8742387_SNP [dm3] 2L_8742387_SNP [dm6]	C	A	1.937e^-4	0.743	INTERGENIC
X	5493644	X_5493644_SNP [dm3] X_5599611_SNP [dm6]	C	G	1.938e^-4	0.743	INTRON Vsx1
X	5493645	X_5493645_SNP [dm3] X_5599612_SNP [dm6]	T	G	1.938e^-4	0.743	INTRON Vsx1
3L	7700697	3L_7700697_SNP [dm3] 3L_7707597_SNP [dm6]	C	G	1.943e^-4	0.743	INTRON CG32373 & 1 other	TF binding site mE1_TFBS_chinmo
2L	13879991	2L_13879991_SNP [dm3] 2L_13879991_SNP [dm6]	T	A	1.946e^-4	0.743	INTRON CenG1A	TF binding site mE1_TFBS_HSA
X	12730125	X_12730125_SNP [dm3] X_12836092_SNP [dm6]	T	A	1.949e^-4	0.743	INTRON Pde9
3L	10813802	3L_10813802_SNP [dm3] 3L_10820702_SNP [dm6]	G	A	1.962e^-4	0.743	INTERGENIC
2R	11437594	2R_11437594_SNP [dm3] 2R_15550089_SNP [dm6]	G	A	1.963e^-4	0.743	UPSTREAM CG8192 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	20959262	2L_20959262_SNP [dm3] 2L_20959262_SNP [dm6]	A	T	1.965e^-4	0.743	INTERGENIC
3R	14177667	3R_14177667_SNP [dm3] 3R_18351945_SNP [dm6]	A	C	1.968e^-4	0.743	INTRON CG15803
2L	17778802	2L_17778802_DEL [dm3] 2L_17778802_DEL [dm6]	TATGCA	T	1.969e^-4	0.743	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
3R	14287661	3R_14287661_SNP [dm3] 3R_18461939_SNP [dm6]	A	C	1.970e^-4	0.743	INTRON fru
2L	18992771	2L_18992771_SNP [dm3] 2L_18992771_SNP [dm6]	T	A	1.976e^-4	0.743	DOWNSTREAM CG10650 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2R	16040582	2R_16040582_SNP [dm3] 2R_20153077_SNP [dm6]	C	A	1.978e^-4	0.743	INTERGENIC
X	4232834	X_4232834_SNP [dm3] X_4338801_SNP [dm6]	G	T	2.002e^-4	0.743	INTRON norpA	TF binding site mE1_TFBS_inv
3R	2364638	3R_2364638_SNP [dm3] 3R_6538916_SNP [dm6]	C	G	2.002e^-4	0.743	INTRON dpr11
2R	13299206	2R_13299206_SNP [dm3] 2R_17411701_SNP [dm6]	C	A	2.010e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20329874	2L_20329874_SNP [dm3] 2L_20329874_SNP [dm6]	T	C	2.012e^-4	0.743	INTRON spir
2L	16953178	2L_16953178_SNP [dm3] 2L_16953178_SNP [dm6]	C	G	2.015e^-4	0.743	INTERGENIC
2L	20959263	2L_20959263_SNP [dm3] 2L_20959263_SNP [dm6]	G	C	2.016e^-4	0.743	INTERGENIC
2L	20959264	2L_20959264_INS [dm3] 2L_20959264_INS [dm6]	A	AA	2.016e^-4	0.743	INTERGENIC
3R	17010695	3R_17010695_SNP [dm3] 3R_21184973_SNP [dm6]	C	G	2.017e^-4	0.743	INTRON SNF4Agamma	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3L	18484529	3L_18484529_SNP [dm3] 3L_18491429_SNP [dm6]	C	T	2.020e^-4	0.743	INTRON AstC-R2
X	20761669	X_20761669_SNP [dm3] X_20890642_SNP [dm6]	T	A	2.020e^-4	0.743	INTRON shakB
2L	7967180	2L_7967180_SNP [dm3] 2L_7967180_SNP [dm6]	C	A	2.021e^-4	0.743	INTRON Snoo	TF binding site BDTNP1_TFBS_dl
3R	9418221	3R_9418221_SNP [dm3] 3R_13592499_SNP [dm6]	G	A	2.023e^-4	0.743	NON_SYNONYMOUS_CODING CG14369
3L	16078538	3L_16078538_DEL [dm3] 3L_16085438_DEL [dm6]	GTG	G	2.024e^-4	0.743	UTR_3_PRIME Taspase1 DOWNSTREAM Taspase1 & 1 other
3L	8772489	3L_8772489_SNP [dm3] 3L_8779389_SNP [dm6]	C	T	2.026e^-4	0.743	INTRON Fhos	TF binding site mE1_TFBS_cad
3R	15015286	3R_15015286_INS [dm3] 3R_19189564_INS [dm6]	G	GAGG	2.030e^-4	0.743	UTR_5_PRIME CG31475	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20294354	2L_20294354_DEL [dm3] 2L_20294354_DEL [dm6]	TGTTTGTTTTCTAACTTATA...	T	2.031e^-4	0.743	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	9774739	3R_9774739_SNP [dm3] 3R_13949017_SNP [dm6]	G	A	2.033e^-4	0.743	INTRON CG31517	TF binding site BDTNP1_TFBS_twi
2R	2719293	2R_2719293_SNP [dm3] 2R_6831788_SNP [dm6]	C	G	2.033e^-4	0.743	UTR_5_PRIME CG34215 INTRON CG15236
3R	25460827	3R_25460827_SNP [dm3] 3R_29635105_SNP [dm6]	C	T	2.035e^-4	0.743	INTRON Dop1R2
3L	16665315	3L_16665315_DEL [dm3] 3L_16672215_DEL [dm6]	CTTGT	C	2.036e^-4	0.743	UTR_3_PRIME zetaCOP INTRON zetaCOP
3L	16665323	3L_16665323_SNP [dm3] 3L_16672223_SNP [dm6]	C	T	2.036e^-4	0.743	UTR_3_PRIME zetaCOP INTRON zetaCOP
3L	16667156	3L_16667156_SNP [dm3] 3L_16674056_SNP [dm6]	A	T	2.069e^-4	0.743	UTR_5_PRIME CG13032 UPSTREAM zetaCOP	regulatory region REDfly_CRMs
3L	16670236	3L_16670236_SNP [dm3] 3L_16677136_SNP [dm6]	G	A	2.069e^-4	0.743	UTR_3_PRIME Lasp DOWNSTREAM CG13032 & 2 others
3L	16674247	3L_16674247_SNP [dm3] 3L_16681147_SNP [dm6]	C	A	2.069e^-4	0.743	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6872459	2R_6872459_SNP [dm3] 2R_10984954_SNP [dm6]	G	A	2.078e^-4	0.743	INTRON luna
3R	9397218	3R_9397218_SNP [dm3] 3R_13571496_SNP [dm6]	T	C	2.082e^-4	0.743	INTERGENIC
3L	7392849	3L_7392849_DEL [dm3] 3L_7399749_DEL [dm6]	CAC	C	2.083e^-4	0.743	UTR_3_PRIME CG8562 UPSTREAM CG18417
3R	11284533	3R_11284533_SNP [dm3] 3R_15458811_SNP [dm6]	A	C	2.090e^-4	0.743	INTRON AdamTS-A
2L	18655867	2L_18655867_SNP [dm3] 2L_18655867_SNP [dm6]	T	A	2.096e^-4	0.743	INTRON MESR3
2L	2794748	2L_2794748_SNP [dm3] 2L_2794748_SNP [dm6]	T	C	2.110e^-4	0.743	INTRON Syt1
3R	9774726	3R_9774726_SNP [dm3] 3R_13949004_SNP [dm6]	T	C	2.114e^-4	0.743	INTRON CG31517	TF binding site BDTNP1_TFBS_twi
2L	6489041	2L_6489041_SNP [dm3] 2L_6489041_SNP [dm6]	A	T	2.115e^-4	0.743	UPSTREAM epsilonCOP & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	17778234	2L_17778234_SNP [dm3] 2L_17778234_SNP [dm6]	C	T	2.121e^-4	0.743	UTR_5_PRIME CadN	TF binding site mE1_TFBS_Trl
2R	20596108	2R_20596108_SNP [dm3] 2R_24708585_SNP [dm6]	T	C	2.125e^-4	0.743	INTRON Mid1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9527546	2L_9527546_SNP [dm3] 2L_9527546_SNP [dm6]	G	T	2.128e^-4	0.743	UPSTREAM CG31883 INTRON Oatp30B
2L	6525313	2L_6525313_SNP [dm3] 2L_6525313_SNP [dm6]	G	C	2.133e^-4	0.743	INTRON CG31637
2R	14262204	2R_14262204_SNP [dm3] 2R_18374699_SNP [dm6]	A	G	2.138e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15794609	X_15794609_SNP [dm3] X_15900576_SNP [dm6]	A	C	2.156e^-4	0.743	INTRON shi
3L	21460609	3L_21460609_SNP [dm3] 3L_21467509_SNP [dm6]	G	A	2.159e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10256294	2R_10256294_SNP [dm3] 2R_14368789_SNP [dm6]	C	T	2.159e^-4	0.743	SYNONYMOUS_CODING CG34443 UPSTREAM CG34444 DOWNSTREAM CG34442
3R	14041208	3R_14041208_SNP [dm3] 3R_18215486_SNP [dm6]	T	C	2.160e^-4	0.743	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC
2R	10607645	2R_10607645_SNP [dm3] 2R_14720140_SNP [dm6]	A	C	2.162e^-4	0.743	INTERGENIC
2L	9816554	2L_9816554_SNP [dm3] 2L_9816554_SNP [dm6]	T	C	2.177e^-4	0.743	INTRON nAChRalpha6
2L	2406545	2L_2406545_SNP [dm3] 2L_2406545_SNP [dm6]	A	G	2.179e^-4	0.743	SYNONYMOUS_CODING VGlut	TF binding site mE1_TFBS_inv
X	17112505	X_17112505_SNP [dm3] X_17218472_SNP [dm6]	T	A	2.184e^-4	0.743	UPSTREAM CG12998 INTERGENIC
2R	10607652	2R_10607652_SNP [dm3] 2R_14720147_SNP [dm6]	G	A	2.189e^-4	0.743	INTERGENIC
2L	7521877	2L_7521877_SNP [dm3] 2L_7521877_SNP [dm6]	A	T	2.201e^-4	0.743	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	16672187	3L_16672187_SNP [dm3] 3L_16679087_SNP [dm6]	C	T	2.207e^-4	0.743	NON_SYNONYMOUS_CODING Lasp START_GAINED CG43954 UTR_5_PRIME CG43954 INTRON Lasp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	836503	2L_836503_SNP [dm3] 2L_836503_SNP [dm6]	G	A	2.214e^-4	0.743	INTRON drongo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10197103	2R_10197103_SNP [dm3] 2R_14309598_SNP [dm6]	C	T	2.218e^-4	0.743	INTRON Shroom	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
3L	21638768	3L_21638768_SNP [dm3] 3L_21645668_SNP [dm6]	A	G	2.221e^-4	0.743	INTRON CG43980	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18583668	3L_18583668_SNP [dm3] 3L_18590568_SNP [dm6]	T	A	2.226e^-4	0.743	DOWNSTREAM CG7271 INTERGENIC
X	17239548	X_17239548_SNP [dm3] X_17345515_SNP [dm6]	A	G	2.228e^-4	0.743	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	9008626	X_9008626_SNP [dm3] X_9114593_SNP [dm6]	T	G	2.235e^-4	0.743	INTRON AP-1gamma	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17934735	2L_17934735_SNP [dm3] 2L_17934735_SNP [dm6]	C	G	2.236e^-4	0.743	INTERGENIC
3L	7389955	3L_7389955_SNP [dm3] 3L_7396855_SNP [dm6]	C	A	2.241e^-4	0.743	SYNONYMOUS_CODING CG32379 DOWNSTREAM CG8563
3L	7389982	3L_7389982_SNP [dm3] 3L_7396882_SNP [dm6]	G	A	2.241e^-4	0.743	NON_SYNONYMOUS_CODING CG32379 DOWNSTREAM CG8563
2L	13433880	2L_13433880_DEL [dm3] 2L_13433880_DEL [dm6]	CATCAAAATCG...	C	2.245e^-4	0.743	INTRON CG42784	TF binding site mE1_TFBS_cad
3R	10215204	3R_10215204_SNP [dm3] 3R_14389482_SNP [dm6]	A	C	2.254e^-4	0.743	INTERGENIC
3R	10215212	3R_10215212_SNP [dm3] 3R_14389490_SNP [dm6]	A	T	2.254e^-4	0.743	INTERGENIC
2L	11291686	2L_11291686_SNP [dm3] 2L_11291686_SNP [dm6]	C	G	2.255e^-4	0.743	UPSTREAM CR43409 INTERGENIC
2L	7491272	2L_7491272_SNP [dm3] 2L_7491272_SNP [dm6]	T	C	2.261e^-4	0.743	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	9703239	3R_9703239_SNP [dm3] 3R_13877517_SNP [dm6]	C	A	2.271e^-4	0.743	UPSTREAM E5 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14330325	2L_14330325_SNP [dm3] 2L_14330325_SNP [dm6]	T	A	2.272e^-4	0.743	INTRON ms_2_34Fe	TF binding site mE1_TFBS_cad
2L	20914880	2L_20914880_SNP [dm3] 2L_20914880_SNP [dm6]	G	T	2.272e^-4	0.743	INTRON sky & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_HSA transposable element FlyBase
3L	8900494	3L_8900494_SNP [dm3] 3L_8907394_SNP [dm6]	A	G	2.279e^-4	0.743	INTRON mfr
2L	16041397	2L_16041397_SNP [dm3] 2L_16041397_SNP [dm6]	G	A	2.283e^-4	0.743	UTR_3_PRIME beat-Ic UPSTREAM BicC & 1 other DOWNSTREAM beat-Ic
2L	16930691	2L_16930691_SNP [dm3] 2L_16930691_SNP [dm6]	C	G	2.285e^-4	0.743	INTERGENIC
2L	10464537	2L_10464537_SNP [dm3] 2L_10464537_SNP [dm6]	G	A	2.286e^-4	0.743	SYNONYMOUS_CODING RluA-1 UTR_3_PRIME RluA-1
2R	9256442	2R_9256442_SNP [dm3] 2R_13368937_SNP [dm6]	T	A	2.289e^-4	0.743	INTERGENIC
3L	10618702	3L_10618702_SNP [dm3] 3L_10625602_SNP [dm6]	G	T	2.297e^-4	0.743	UPSTREAM CG34238 & 1 other INTERGENIC
2R	17238601	2R_17238601_SNP [dm3] 2R_21351096_SNP [dm6]	C	A	2.304e^-4	0.743	UPSTREAM CG17974 INTERGENIC
3L	5835238	3L_5835238_SNP [dm3] 3L_5842138_SNP [dm6]	C	G	2.323e^-4	0.743	INTRON vn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	7830614	3L_7830614_SNP [dm3] 3L_7837514_SNP [dm6]	A	T	2.326e^-4	0.743	INTRON Pdp1	regulatory region REDfly_CRMs
2L	16541527	2L_16541527_SNP [dm3] 2L_16541527_SNP [dm6]	T	C	2.326e^-4	0.743	INTERGENIC
3R	2296994	3R_2296994_SNP [dm3] 3R_6471272_SNP [dm6]	A	G	2.329e^-4	0.743	DOWNSTREAM Neurochondrin INTERGENIC
3R	9835286	3R_9835286_SNP [dm3] 3R_14009564_SNP [dm6]	G	A	2.338e^-4	0.743	INTRON rdx
3L	15724286	3L_15724286_SNP [dm3] 3L_15731186_SNP [dm6]	A	C	2.342e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	859029	X_859029_SNP [dm3] X_964996_SNP [dm6]	T	A	2.349e^-4	0.743	INTERGENIC
3L	1868973	3L_1868973_SNP [dm3] 3L_1868973_SNP [dm6]	A	G	2.352e^-4	0.743	UTR_3_PRIME CG12025 DOWNSTREAM CG12025
3L	1869030	3L_1869030_SNP [dm3] 3L_1869030_SNP [dm6]	A	T	2.352e^-4	0.743	UTR_3_PRIME CG12025 UPSTREAM CG13924 DOWNSTREAM CG12025
2L	2794753	2L_2794753_SNP [dm3] 2L_2794753_SNP [dm6]	G	T	2.355e^-4	0.743	INTRON Syt1
3L	16670731	3L_16670731_SNP [dm3] 3L_16677631_SNP [dm6]	A	T	2.360e^-4	0.743	UTR_3_PRIME Lasp & 1 other
X	3531016	X_3531016_SNP [dm3] X_3636983_SNP [dm6]	T	A	2.361e^-4	0.743	INTRON AstA-R1
3R	2500888	3R_2500888_SNP [dm3] 3R_6675166_SNP [dm6]	A	G	2.363e^-4	0.743	INTRON lab	regulatory region FlyBase REDfly_CRMs
2R	4807317	2R_4807317_SNP [dm3] 2R_8919812_SNP [dm6]	G	T	2.369e^-4	0.743	SYNONYMOUS_CODING CG8248 UPSTREAM CG34219 DOWNSTREAM Spt
2L	2800248	2L_2800248_SNP [dm3] 2L_2800248_SNP [dm6]	C	T	2.371e^-4	0.743	UPSTREAM Syt1 INTERGENIC
2L	18909681	2L_18909681_SNP [dm3] 2L_18909681_SNP [dm6]	C	T	2.375e^-4	0.743	INTERGENIC
2R	2909965	2R_2909965_SNP [dm3] 2R_7022460_SNP [dm6]	T	G	2.376e^-4	0.743	DOWNSTREAM CR44172 INTERGENIC
2L	14374806	2L_14374806_SNP [dm3] 2L_14374806_SNP [dm6]	A	T	2.377e^-4	0.743	INTERGENIC
3L	4640025	3L_4640025_SNP [dm3] 3L_4640025_SNP [dm6]	T	A	2.378e^-4	0.743	INTRON axo
3L	10813531	3L_10813531_SNP [dm3] 3L_10820431_SNP [dm6]	A	G	2.384e^-4	0.743	INTERGENIC
3R	10279669	3R_10279669_SNP [dm3] 3R_14453947_SNP [dm6]	G	A	2.386e^-4	0.743	INTRON cv-c
2L	11288243	2L_11288243_SNP [dm3] 2L_11288243_SNP [dm6]	G	T	2.389e^-4	0.743	INTERGENIC
2L	18165923	2L_18165923_SNP [dm3] 2L_18165923_SNP [dm6]	A	G	2.393e^-4	0.743	INTRON CG42750
2L	14619830	2L_14619830_SNP [dm3] 2L_14619830_SNP [dm6]	A	G	2.396e^-4	0.743	DOWNSTREAM Adhr & 1 other INTRON osp
2L	14619849	2L_14619849_SNP [dm3] 2L_14619849_SNP [dm6]	T	G	2.396e^-4	0.743	DOWNSTREAM Adhr & 1 other INTRON osp
2L	20963026	2L_20963026_SNP [dm3] 2L_20963026_SNP [dm6]	A	T	2.397e^-4	0.743	INTERGENIC
X	484066	X_484066_SNP [dm3] X_590033_SNP [dm6]	G	A	2.403e^-4	0.743	INTRON vnd & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	584024	X_584024_SNP [dm3] X_689991_SNP [dm6]	G	C	2.409e^-4	0.743	INTRON sdk	TF binding site BDTNP1_TFBS_da
3L	14947114	3L_14947114_SNP [dm3] 3L_14954014_SNP [dm6]	A	T	2.413e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14947133	3L_14947133_SNP [dm3] 3L_14954033_SNP [dm6]	A	T	2.413e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	891901	2L_891901_DEL [dm3] 2L_891901_DEL [dm6]	GGGATCTG	G	2.415e^-4	0.743	INTERGENIC
3L	5090879	3L_5090879_SNP [dm3] 3L_5090879_SNP [dm6]	G	A	2.418e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9774780	3R_9774780_SNP [dm3] 3R_13949058_SNP [dm6]	C	A	2.418e^-4	0.743	INTRON CG31517	TF binding site BDTNP1_TFBS_twi
X	3529524	X_3529524_SNP [dm3] X_3635491_SNP [dm6]	T	C	2.421e^-4	0.743	INTRON AstA-R1
2L	1533793	2L_1533793_DEL [dm3] 2L_1533793_DEL [dm6]	GCTCTCTT	CA	2.424e^-4	0.743	INTERGENIC
2L	9711386	2L_9711386_SNP [dm3] 2L_9711386_SNP [dm6]	G	A	2.432e^-4	0.743	UPSTREAM CG4364 DOWNSTREAM Nckx30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	16118375	2R_16118375_SNP [dm3] 2R_20230870_SNP [dm6]	C	T	2.438e^-4	0.743	UPSTREAM CG11044 INTERGENIC
X	8086288	X_8086288_SNP [dm3] X_8192255_SNP [dm6]	T	A	2.444e^-4	0.743	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	836453	2L_836453_SNP [dm3] 2L_836453_SNP [dm6]	C	G	2.451e^-4	0.743	INTRON drongo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2531104	2L_2531104_SNP [dm3] 2L_2531104_SNP [dm6]	T	C	2.455e^-4	0.743	INTERGENIC
2L	19855328	2L_19855328_SNP [dm3] 2L_19855328_SNP [dm6]	T	G	2.460e^-4	0.743	INTRON sick
3R	14287655	3R_14287655_INS [dm3] 3R_18461933_INS [dm6]	A	ATATAG	2.461e^-4	0.743	INTRON fru
2L	20331580	2L_20331580_SNP [dm3] 2L_20331580_SNP [dm6]	T	G	2.462e^-4	0.743	INTRON spir
3L	7120186	3L_7120186_SNP [dm3] 3L_7127086_SNP [dm6]	G	A	2.464e^-4	0.743	SYNONYMOUS_CODING BBS1 DOWNSTREAM CG8629	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18655865	2L_18655865_SNP [dm3] 2L_18655865_SNP [dm6]	T	A	2.477e^-4	0.743	INTRON MESR3
2L	17995691	2L_17995691_SNP [dm3] 2L_17995691_SNP [dm6]	G	A	2.477e^-4	0.743	INTERGENIC
3R	16873142	3R_16873142_SNP [dm3] 3R_21047420_SNP [dm6]	A	G	2.478e^-4	0.743	UPSTREAM CG31207 DOWNSTREAM CG7079 INTERGENIC
2L	7966093	2L_7966093_SNP [dm3] 2L_7966093_SNP [dm6]	C	T	2.481e^-4	0.743	INTRON Snoo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18486936	3L_18486936_SNP [dm3] 3L_18493836_SNP [dm6]	A	C	2.482e^-4	0.743	INTRON AstC-R2
X	22197517	X_22197517_SNP [dm3] X_22795681_SNP [dm6]	T	A	2.489e^-4	0.743	INTRON CR44997
2R	10478664	2R_10478664_SNP [dm3] 2R_14591159_SNP [dm6]	G	T	2.493e^-4	0.743	UPSTREAM CG12869 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10802983	2L_10802983_SNP [dm3] 2L_10802983_SNP [dm6]	T	A	2.497e^-4	0.743	UPSTREAM CR44581 INTERGENIC	TF binding site mE1_TFBS_inv
3L	16670741	3L_16670741_SNP [dm3] 3L_16677641_SNP [dm6]	A	G	2.497e^-4	0.743	UTR_3_PRIME Lasp & 1 other
2R	4961415	2R_4961415_SNP [dm3] 2R_9073910_SNP [dm6]	T	C	2.505e^-4	0.743	INTRON ana
X	19288278	X_19288278_SNP [dm3] X_19394245_SNP [dm6]	G	A	2.510e^-4	0.743	INTRON kek5
2L	11296751	2L_11296751_SNP [dm3] 2L_11296751_SNP [dm6]	T	A	2.518e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	20124924	2L_20124924_SNP [dm3] 2L_20124924_SNP [dm6]	A	G	2.519e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1712712	2L_1712712_SNP [dm3] 2L_1712712_SNP [dm6]	C	T	2.526e^-4	0.743	SYNONYMOUS_CODING frtz	TF binding site mE1_TFBS_chinmo
2L	4090811	2L_4090811_SNP [dm3] 2L_4090811_SNP [dm6]	C	T	2.530e^-4	0.743	INTRON ed
2L	16087023	2L_16087023_SNP [dm3] 2L_16087023_SNP [dm6]	A	C	2.531e^-4	0.743	INTERGENIC
3R	11360743	3R_11360743_SNP [dm3] 3R_15535021_SNP [dm6]	A	T	2.532e^-4	0.743	SYNONYMOUS_CODING CG18522	TF binding site mE1_TFBS_chinmo
2L	1035016	2L_1035016_SNP [dm3] 2L_1035016_SNP [dm6]	G	C	2.534e^-4	0.743	UPSTREAM IA-2 INTRON IA-2
2L	16027156	2L_16027156_SNP [dm3] 2L_16027156_SNP [dm6]	C	A	2.541e^-4	0.743	INTRON beat-Ic
2L	16027202	2L_16027202_SNP [dm3] 2L_16027202_SNP [dm6]	G	T	2.541e^-4	0.743	INTRON beat-Ic
2L	16027205	2L_16027205_SNP [dm3] 2L_16027205_SNP [dm6]	A	T	2.541e^-4	0.743	INTRON beat-Ic
3L	15775774	3L_15775774_SNP [dm3] 3L_15782674_SNP [dm6]	G	A	2.544e^-4	0.743	INTERGENIC
3L	8860683	3L_8860683_SNP [dm3] 3L_8867583_SNP [dm6]	G	T	2.546e^-4	0.743	INTRON dally
3R	25453609	3R_25453609_SNP [dm3] 3R_29627887_SNP [dm6]	C	T	2.561e^-4	0.743	INTERGENIC
2R	16478565	2R_16478565_INS [dm3] 2R_20591060_INS [dm6]	C	CC	2.561e^-4	0.743	INTRON bl
2L	1457531	2L_1457531_SNP [dm3] 2L_1457531_SNP [dm6]	A	T	2.568e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17778800	2L_17778800_SNP [dm3] 2L_17778800_SNP [dm6]	A	G	2.570e^-4	0.743	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
2R	13159178	2R_13159178_SNP [dm3] 2R_17271673_SNP [dm6]	C	G	2.574e^-4	0.743	INTRON mbl
2L	5669803	2L_5669803_SNP [dm3] 2L_5669803_SNP [dm6]	T	C	2.574e^-4	0.743	SYNONYMOUS_CODING Hsp60C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8174903	2L_8174903_DEL [dm3] 2L_8174903_DEL [dm6]	TT	T	2.575e^-4	0.743	INTRON Piezo	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	18358287	2R_18358287_SNP [dm3] 2R_22470782_SNP [dm6]	T	C	2.583e^-4	0.743	SYNONYMOUS_CODING CG10384	TF binding site mE1_TFBS_chinmo
3L	7415528	3L_7415528_SNP [dm3] 3L_7422428_SNP [dm6]	G	A	2.586e^-4	0.743	INTERGENIC
2R	14262217	2R_14262217_SNP [dm3] 2R_18374712_SNP [dm6]	G	T	2.589e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26174433	3R_26174433_DEL [dm3] 3R_30348711_DEL [dm6]	CGGCGGGAGTTTGC...	C	2.593e^-4	0.743	INTRON hdc
2L	16063611	2L_16063611_SNP [dm3] 2L_16063611_SNP [dm6]	T	G	2.598e^-4	0.743	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
X	17112492	X_17112492_SNP [dm3] X_17218459_SNP [dm6]	T	C	2.599e^-4	0.743	UPSTREAM CG12998 INTERGENIC
2L	701024	2L_701024_SNP [dm3] 2L_701024_SNP [dm6]	T	G	2.602e^-4	0.743	INTRON ds	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	517208	X_517208_SNP [dm3] X_623175_SNP [dm6]	A	C	2.612e^-4	0.743	UPSTREAM CG13369 DOWNSTREAM mod_r_ INTERGENIC
2L	15741180	2L_15741180_SNP [dm3] 2L_15741180_SNP [dm6]	A	T	2.620e^-4	0.743	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13544927	X_13544927_SNP [dm3] X_13650894_SNP [dm6]	A	T	2.626e^-4	0.743	INTRON NFAT	TF binding site mE1_TFBS_HSA
X	13544934	X_13544934_SNP [dm3] X_13650901_SNP [dm6]	T	C	2.626e^-4	0.743	INTRON NFAT	TF binding site mE1_TFBS_HSA
X	13544936	X_13544936_SNP [dm3] X_13650903_SNP [dm6]	T	C	2.626e^-4	0.743	INTRON NFAT	TF binding site mE1_TFBS_HSA
2L	21852951	2L_21852951_SNP [dm3] 2L_21852951_SNP [dm6]	C	A	2.627e^-4	0.743	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19183459	2R_19183459_SNP [dm3] 2R_23295936_SNP [dm6]	T	A	2.632e^-4	0.743	INTERGENIC
2R	16765870	2R_16765870_SNP [dm3] 2R_20878365_SNP [dm6]	T	A	2.637e^-4	0.743	UTR_3_PRIME Ipk1 INTRON Ipk1
3L	15506318	3L_15506318_SNP [dm3] 3L_15513218_SNP [dm6]	G	C	2.639e^-4	0.743	DOWNSTREAM Eip71CD INTERGENIC
3L	11806452	3L_11806452_SNP [dm3] 3L_11813352_SNP [dm6]	G	A	2.642e^-4	0.743	SYNONYMOUS_CODING CG42255	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	21289872	3R_21289872_SNP [dm3] 3R_25464150_SNP [dm6]	A	G	2.643e^-4	0.743	INTRON Fur1
2L	9527549	2L_9527549_SNP [dm3] 2L_9527549_SNP [dm6]	G	C	2.645e^-4	0.743	UPSTREAM CG31883 INTRON Oatp30B
3L	7220779	3L_7220779_SNP [dm3] 3L_7227679_SNP [dm6]	T	G	2.658e^-4	0.743	INTERGENIC
3L	8696117	3L_8696117_SNP [dm3] 3L_8703017_SNP [dm6]	C	G	2.664e^-4	0.743	INTERGENIC
X	8471071	X_8471071_SNP [dm3] X_8577038_SNP [dm6]	C	A	2.667e^-4	0.743	INTRON CG12065
3L	8115095	3L_8115095_SNP [dm3] 3L_8121995_SNP [dm6]	T	A	2.669e^-4	0.743	NON_SYNONYMOUS_CODING ldbr DOWNSTREAM msk	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14861531	2R_14861531_SNP [dm3] 2R_18974026_SNP [dm6]	T	C	2.672e^-4	0.743	NON_SYNONYMOUS_CODING Topors	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9704688	3R_9704688_SNP [dm3] 3R_13878966_SNP [dm6]	C	A	2.673e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25599792	3R_25599792_SNP [dm3] 3R_29774070_SNP [dm6]	A	G	2.676e^-4	0.743	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4328560	X_4328560_SNP [dm3] X_4434527_SNP [dm6]	A	T	2.680e^-4	0.743	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl
X	596110	X_596110_SNP [dm3] X_702077_SNP [dm6]	T	A	2.683e^-4	0.743	INTRON sdk
3R	14847165	3R_14847165_SNP [dm3] 3R_19021443_SNP [dm6]	A	G	2.688e^-4	0.743	SYNONYMOUS_CODING gukh UTR_3_PRIME gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19183380	2R_19183380_SNP [dm3] 2R_23295857_SNP [dm6]	T	A	2.690e^-4	0.743	INTERGENIC
2R	19183564	2R_19183564_SNP [dm3] 2R_23296041_SNP [dm6]	G	A	2.690e^-4	0.743	INTERGENIC
2L	20317123	2L_20317123_INS [dm3] 2L_20317123_INS [dm6]	G	GTGG	2.697e^-4	0.743	INTRON spir & 1 other
2L	22077415	2L_22077415_SNP [dm3] 2L_22077415_SNP [dm6]	A	G	2.699e^-4	0.743	INTERGENIC
3L	11691844	3L_11691844_SNP [dm3] 3L_11698744_SNP [dm6]	C	T	2.704e^-4	0.743	SYNONYMOUS_CODING CG6053 DOWNSTREAM CG11658	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11871717	2L_11871717_SNP [dm3] 2L_11871717_SNP [dm6]	G	C	2.708e^-4	0.743	INTRON Pde1c
2R	5613542	2R_5613542_SNP [dm3] 2R_9726037_SNP [dm6]	G	T	2.720e^-4	0.743	INTRON sqa
2L	14373681	2L_14373681_SNP [dm3] 2L_14373681_SNP [dm6]	G	T	2.726e^-4	0.743	INTERGENIC
3R	23854920	3R_23854920_SNP [dm3] 3R_28029198_SNP [dm6]	T	G	2.726e^-4	0.743	INTRON CG34362
3R	10810458	3R_10810458_SNP [dm3] 3R_14984736_SNP [dm6]	C	T	2.727e^-4	0.743	INTERGENIC
3R	12015564	3R_12015564_SNP [dm3] 3R_16189842_SNP [dm6]	T	A	2.734e^-4	0.743	INTRON sra
3L	16874516	3L_16874516_SNP [dm3] 3L_16881416_SNP [dm6]	A	C	2.737e^-4	0.743	INTRON Lmpt
3R	14895635	3R_14895635_SNP [dm3] 3R_19069913_SNP [dm6]	T	A	2.738e^-4	0.743	INTRON cdi
3R	14895645	3R_14895645_SNP [dm3] 3R_19069923_SNP [dm6]	T	A	2.738e^-4	0.743	INTRON cdi
3R	14895648	3R_14895648_SNP [dm3] 3R_19069926_SNP [dm6]	T	A	2.738e^-4	0.743	INTRON cdi
3R	14895649	3R_14895649_INS [dm3] 3R_19069927_INS [dm6]	A	AAAACTT	2.738e^-4	0.743	INTRON cdi
3R	14895652	3R_14895652_SNP [dm3] 3R_19069930_SNP [dm6]	A	C	2.738e^-4	0.743	INTRON cdi
3R	14895656	3R_14895656_DEL [dm3] 3R_19069934_DEL [dm6]	TT	T	2.738e^-4	0.743	INTRON cdi
3R	14895716	3R_14895716_SNP [dm3] 3R_19069994_SNP [dm6]	T	C	2.738e^-4	0.743	INTRON cdi
3R	14898459	3R_14898459_SNP [dm3] 3R_19072737_SNP [dm6]	T	G	2.738e^-4	0.743	INTRON cdi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	17797212	2L_17797212_SNP [dm3] 2L_17797212_SNP [dm6]	T	A	2.738e^-4	0.743	INTRON CadN2
3R	9373673	3R_9373673_DEL [dm3] 3R_13547951_DEL [dm6]	TAT	T	2.739e^-4	0.743	INTERGENIC
3L	14420578	3L_14420578_SNP [dm3] 3L_14427478_SNP [dm6]	G	A	2.741e^-4	0.743	UPSTREAM bbg INTRON bbg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8142458	2L_8142458_SNP [dm3] 2L_8142458_SNP [dm6]	G	T	2.748e^-4	0.743	UPSTREAM mir-4984 DOWNSTREAM CG42762 INTRON CG8552
2L	16461933	2L_16461933_SNP [dm3] 2L_16461933_SNP [dm6]	T	C	2.750e^-4	0.743	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	14178007	3R_14178007_SNP [dm3] 3R_18352285_SNP [dm6]	A	T	2.753e^-4	0.743	INTRON CG15803
X	597450	X_597450_SNP [dm3] X_703417_SNP [dm6]	C	G	2.754e^-4	0.743	INTRON sdk
3L	16152166	3L_16152166_SNP [dm3] 3L_16159066_SNP [dm6]	T	G	2.757e^-4	0.743	INTRON CG5151
2L	16541487	2L_16541487_DEL [dm3] 2L_16541487_DEL [dm6]	TAC	T	2.765e^-4	0.743	INTERGENIC
3R	26045650	3R_26045650_SNP [dm3] 3R_30219928_SNP [dm6]	A	G	2.767e^-4	0.743	INTERGENIC
3L	1868972	3L_1868972_SNP [dm3] 3L_1868972_SNP [dm6]	A	C	2.769e^-4	0.743	UTR_3_PRIME CG12025 DOWNSTREAM CG12025
X	16889570	X_16889570_SNP [dm3] X_16995537_SNP [dm6]	C	G	2.770e^-4	0.743	INTRON CG45002	TF binding site mE1_TFBS_HSA
2R	16389758	2R_16389758_SNP [dm3] 2R_20502253_SNP [dm6]	G	A	2.772e^-4	0.743	INTERGENIC	regulatory region REDfly_CRMs
2R	16389759	2R_16389759_SNP [dm3] 2R_20502254_SNP [dm6]	A	G	2.772e^-4	0.743	INTERGENIC	regulatory region REDfly_CRMs
3L	15190988	3L_15190988_DEL [dm3] 3L_15197888_DEL [dm6]	GT	G	2.775e^-4	0.743	INTERGENIC
3R	26045641	3R_26045641_SNP [dm3] 3R_30219919_SNP [dm6]	A	T	2.776e^-4	0.743	INTERGENIC
3R	26045647	3R_26045647_SNP [dm3] 3R_30219925_SNP [dm6]	C	T	2.776e^-4	0.743	INTERGENIC
3R	26045651	3R_26045651_SNP [dm3] 3R_30219929_SNP [dm6]	G	A	2.776e^-4	0.743	INTERGENIC
3R	10215265	3R_10215265_SNP [dm3] 3R_14389543_SNP [dm6]	A	T	2.783e^-4	0.743	INTERGENIC
2L	848462	2L_848462_SNP [dm3] 2L_848462_SNP [dm6]	T	C	2.789e^-4	0.743	INTRON drongo	TF binding site mE1_TFBS_sens
3R	13818882	3R_13818882_SNP [dm3] 3R_17993160_SNP [dm6]	C	T	2.792e^-4	0.743	INTRON cpo	TF binding site mE1_TFBS_inv
X	12730119	X_12730119_SNP [dm3] X_12836086_SNP [dm6]	C	G	2.793e^-4	0.743	INTRON Pde9
2R	10251028	2R_10251028_SNP [dm3] 2R_14363523_SNP [dm6]	T	C	2.797e^-4	0.743	DOWNSTREAM Arc2 INTRON Tfb1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	12730122	X_12730122_SNP [dm3] X_12836089_SNP [dm6]	C	T	2.800e^-4	0.743	INTRON Pde9
2L	1509860	2L_1509860_DEL [dm3] 2L_1509860_DEL [dm6]	TT	T	2.801e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3R	13919189	3R_13919189_DEL [dm3] 3R_18093467_DEL [dm6]	GTATT	CC	2.802e^-4	0.743	INTRON sr
3L	5090834	3L_5090834_SNP [dm3] 3L_5090834_SNP [dm6]	A	G	2.804e^-4	0.743	INTERGENIC
2L	9881141	2L_9881141_SNP [dm3] 2L_9881141_SNP [dm6]	T	C	2.806e^-4	0.743	INTRON nAChRalpha6
2R	12766288	2R_12766288_SNP [dm3] 2R_16878783_SNP [dm6]	T	C	2.806e^-4	0.743	INTRON CG8910
2R	16759500	2R_16759500_SNP [dm3] 2R_20871995_SNP [dm6]	A	G	2.809e^-4	0.743	SYNONYMOUS_CODING Ipk1	TF binding site mE1_TFBS_chinmo
X	17239304	X_17239304_SNP [dm3] X_17345271_SNP [dm6]	A	T	2.815e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16597803	X_16597803_SNP [dm3] X_16703770_SNP [dm6]	G	A	2.823e^-4	0.744	SYNONYMOUS_CODING CG9673 UPSTREAM CG4653 INTRON CG4678	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26045653	3R_26045653_SNP [dm3] 3R_30219931_SNP [dm6]	A	T	2.825e^-4	0.744	INTERGENIC
2R	9253631	2R_9253631_SNP [dm3] 2R_13366126_SNP [dm6]	T	G	2.828e^-4	0.744	INTERGENIC
3R	14287672	3R_14287672_SNP [dm3] 3R_18461950_SNP [dm6]	C	T	2.840e^-4	0.744	INTRON fru
3R	14287685	3R_14287685_SNP [dm3] 3R_18461963_SNP [dm6]	G	C	2.840e^-4	0.744	INTRON fru
2R	6682224	2R_6682224_SNP [dm3] 2R_10794719_SNP [dm6]	C	T	2.840e^-4	0.744	INTRON CG33144
3R	20002832	3R_20002832_DEL [dm3] 3R_24177110_DEL [dm6]	ATT	A	2.846e^-4	0.744	INTRON CG13606
2R	10006840	2R_10006840_SNP [dm3] 2R_14119335_SNP [dm6]	T	A	2.847e^-4	0.744	INTRON Prosap
2R	13607814	2R_13607814_SNP [dm3] 2R_17720309_SNP [dm6]	T	C	2.859e^-4	0.746	UPSTREAM CG6424 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	10006869	2R_10006869_SNP [dm3] 2R_14119364_SNP [dm6]	C	G	2.867e^-4	0.746	INTRON Prosap
2L	10896688	2L_10896688_SNP [dm3] 2L_10896688_SNP [dm6]	G	T	2.870e^-4	0.746	INTERGENIC
X	11186197	X_11186197_SNP [dm3] X_11292164_SNP [dm6]	G	A	2.879e^-4	0.746	INTRON CG44422
2L	15401074	2L_15401074_SNP [dm3] 2L_15401074_SNP [dm6]	T	A	2.882e^-4	0.746	UPSTREAM CR45374 INTERGENIC
3R	13974089	3R_13974089_SNP [dm3] 3R_18148367_SNP [dm6]	T	A	2.885e^-4	0.746	INTERGENIC
3L	7830608	3L_7830608_SNP [dm3] 3L_7837508_SNP [dm6]	A	G	2.891e^-4	0.746	INTRON Pdp1	regulatory region REDfly_CRMs
3L	1538284	3L_1538284_SNP [dm3] 3L_1538284_SNP [dm6]	C	A	2.892e^-4	0.746	INTRON CG7852	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7456313	2L_7456313_SNP [dm3] 2L_7456313_SNP [dm6]	G	A	2.895e^-4	0.746	SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA
2L	8390940	2L_8390940_SNP [dm3] 2L_8390940_SNP [dm6]	C	T	2.899e^-4	0.746	SYNONYMOUS_CODING CG42820	TF binding site mE1_TFBS_HSA
2L	16953065	2L_16953065_SNP [dm3] 2L_16953065_SNP [dm6]	A	G	2.901e^-4	0.746	INTERGENIC
3R	10312397	3R_10312397_SNP [dm3] 3R_14486675_SNP [dm6]	G	A	2.909e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	12896165	3R_12896165_SNP [dm3] 3R_17070443_SNP [dm6]	G	T	2.911e^-4	0.746	DOWNSTREAM Ns1 & 1 other INTERGENIC
2R	10251106	2R_10251106_SNP [dm3] 2R_14363601_SNP [dm6]	G	A	2.913e^-4	0.746	SYNONYMOUS_CODING Tfb1 DOWNSTREAM Arc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	17796996	2L_17796996_SNP [dm3] 2L_17796996_SNP [dm6]	T	G	2.919e^-4	0.746	INTRON CadN2
2L	8360301	2L_8360301_SNP [dm3] 2L_8360301_SNP [dm6]	T	C	2.924e^-4	0.746	SYNONYMOUS_CODING CG7627	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10256052	2R_10256052_SNP [dm3] 2R_14368547_SNP [dm6]	G	A	2.926e^-4	0.746	SYNONYMOUS_CODING CG34443 UPSTREAM CG34444 DOWNSTREAM CG34442
2R	10256201	2R_10256201_SNP [dm3] 2R_14368696_SNP [dm6]	G	A	2.926e^-4	0.746	UPSTREAM CG34444 DOWNSTREAM CG34442 INTRON CG34443
2L	13045781	2L_13045781_SNP [dm3] 2L_13045781_SNP [dm6]	T	C	2.930e^-4	0.746	INTRON CG9932
X	22187737	X_22187737_SNP [dm3] X_22785901_SNP [dm6]	T	A	2.952e^-4	0.75	INTRON CR44997
3R	20127222	3R_20127222_SNP [dm3] 3R_24301500_SNP [dm6]	A	T	2.953e^-4	0.75	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	3981249	2R_3981249_SNP [dm3] 2R_8093744_SNP [dm6]	C	T	2.957e^-4	0.75	INTRON CG8713
2L	17995164	2L_17995164_SNP [dm3] 2L_17995164_SNP [dm6]	A	G	2.963e^-4	0.75	UPSTREAM CR44767 INTERGENIC
2L	6489061	2L_6489061_SNP [dm3] 2L_6489061_SNP [dm6]	T	A	2.976e^-4	0.752	UPSTREAM epsilonCOP & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	6282323	X_6282323_SNP [dm3] X_6388290_SNP [dm6]	A	G	3.007e^-4	0.759	INTERGENIC
2L	20327414	2L_20327414_SNP [dm3] 2L_20327414_SNP [dm6]	A	C	3.011e^-4	0.759	INTRON spir
2L	20057729	2L_20057729_SNP [dm3] 2L_20057729_SNP [dm6]	C	T	3.022e^-4	0.76	DOWNSTREAM barr INTERGENIC
3L	16874529	3L_16874529_SNP [dm3] 3L_16881429_SNP [dm6]	A	T	3.023e^-4	0.76	INTRON Lmpt
4	428402	4_428402_SNP [dm3] 4_407776_SNP [dm6]	C	T	3.033e^-4	0.761	INTERGENIC	transposable element FlyBase
3R	26181799	3R_26181799_SNP [dm3] 3R_30356077_SNP [dm6]	G	T	3.037e^-4	0.761	INTRON hdc
2R	6635754	2R_6635754_SNP [dm3] 2R_10748249_SNP [dm6]	T	A	3.041e^-4	0.761	INTRON CG33144
2L	3753396	2L_3753396_SNP [dm3] 2L_3753396_SNP [dm6]	G	T	3.042e^-4	0.761	UTR_3_PRIME CG10019
2R	18140496	2R_18140496_SNP [dm3] 2R_22252991_SNP [dm6]	G	A	3.047e^-4	0.761	INTRON dve
2L	2334145	2L_2334145_SNP [dm3] 2L_2334145_SNP [dm6]	T	A	3.056e^-4	0.761	INTRON CG9967 & 1 other
3L	18930896	3L_18930896_SNP [dm3] 3L_18937796_SNP [dm6]	T	C	3.060e^-4	0.761	INTRON CG32204
3L	4775381	3L_4775381_SNP [dm3] 3L_4775381_SNP [dm6]	A	G	3.065e^-4	0.761	INTRON RhoGEF64C
3L	4775412	3L_4775412_SNP [dm3] 3L_4775412_SNP [dm6]	A	G	3.065e^-4	0.761	INTRON RhoGEF64C
3L	3275378	3L_3275378_SNP [dm3] 3L_3275378_SNP [dm6]	T	G	3.083e^-4	0.765	INTRON CG14960
2L	7490743	2L_7490743_SNP [dm3] 2L_7490743_SNP [dm6]	G	A	3.095e^-4	0.765	INTRON Ziz	TF binding site BDTNP1_TFBS_dl
2R	9530019	2R_9530019_SNP [dm3] 2R_13642514_SNP [dm6]	T	A	3.098e^-4	0.765	INTRON fas
2L	20143400	2L_20143400_SNP [dm3] 2L_20143400_SNP [dm6]	T	C	3.100e^-4	0.765	INTERGENIC
2L	17961962	2L_17961962_SNP [dm3] 2L_17961962_SNP [dm6]	G	A	3.108e^-4	0.765	DOWNSTREAM btv INTERGENIC
2L	6489197	2L_6489197_SNP [dm3] 2L_6489197_SNP [dm6]	C	A	3.109e^-4	0.765	SYNONYMOUS_CODING epsilonCOP UPSTREAM KFase DOWNSTREAM CG9548	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	20019782	2R_20019782_SNP [dm3] 2R_24132259_SNP [dm6]	C	A	3.113e^-4	0.765	UPSTREAM tamo INTRON tamo
2L	20298560	2L_20298560_DEL [dm3] 2L_20298560_DEL [dm6]	TGA	T	3.133e^-4	0.765	INTERGENIC	TF binding site mE1_TFBS_sens
2L	9147069	2L_9147069_SNP [dm3] 2L_9147069_SNP [dm6]	C	T	3.136e^-4	0.765	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18880271	2L_18880271_SNP [dm3] 2L_18880271_SNP [dm6]	A	C	3.142e^-4	0.765	INTRON tup	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	16655848	2R_16655848_SNP [dm3] 2R_20768343_SNP [dm6]	C	G	3.143e^-4	0.765	DOWNSTREAM CR44665 INTERGENIC
X	3003606	X_3003606_SNP [dm3] X_3109573_SNP [dm6]	T	C	3.144e^-4	0.765	INTRON kirre
3L	16647416	3L_16647416_DEL [dm3] 3L_16654316_DEL [dm6]	CGA	T	3.145e^-4	0.765	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
3R	26179062	3R_26179062_SNP [dm3] 3R_30353340_SNP [dm6]	G	A	3.147e^-4	0.765	INTRON hdc
3R	26181387	3R_26181387_SNP [dm3] 3R_30355665_SNP [dm6]	C	T	3.147e^-4	0.765	INTRON hdc
3R	26181391	3R_26181391_SNP [dm3] 3R_30355669_SNP [dm6]	G	T	3.147e^-4	0.765	INTRON hdc
3L	10618667	3L_10618667_SNP [dm3] 3L_10625567_SNP [dm6]	C	G	3.167e^-4	0.768	UTR_5_PRIME CG43127 UPSTREAM CG34238
X	11743848	X_11743848_SNP [dm3] X_11849815_SNP [dm6]	T	C	3.173e^-4	0.768	EXON CR45619
3R	9702625	3R_9702625_SNP [dm3] 3R_13876903_SNP [dm6]	A	T	3.174e^-4	0.768	INTRON E5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21725660	2L_21725660_SNP [dm3] 2L_21725660_SNP [dm6]	G	C	3.175e^-4	0.768	INTRON CG31619	transposable element FlyBase
3L	5835136	3L_5835136_SNP [dm3] 3L_5842036_SNP [dm6]	G	C	3.189e^-4	0.769	INTRON vn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	608471	3L_608471_SNP [dm3] 3L_608471_SNP [dm6]	A	C	3.199e^-4	0.769	DOWNSTREAM CR44513 INTERGENIC
2L	6892322	2L_6892322_SNP [dm3] 2L_6892322_SNP [dm6]	C	T	3.200e^-4	0.769	INTRON Nlg2
2L	1534104	2L_1534104_SNP [dm3] 2L_1534104_SNP [dm6]	A	G	3.201e^-4	0.769	INTERGENIC
2R	1375477	2R_1375477_SNP [dm3] 2R_5487972_SNP [dm6]	C	T	3.205e^-4	0.769	INTRON CG30440
3L	16292948	3L_16292948_SNP [dm3] 3L_16299848_SNP [dm6]	C	T	3.216e^-4	0.769	INTERGENIC
2R	1496137	2R_1496137_SNP [dm3] 2R_5608632_SNP [dm6]	A	T	3.222e^-4	0.769	UPSTREAM CG17508 INTERGENIC
2L	8098931	2L_8098931_SNP [dm3] 2L_8098931_SNP [dm6]	T	A	3.225e^-4	0.769	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3627973	2L_3627973_SNP [dm3] 2L_3627973_SNP [dm6]	T	C	3.227e^-4	0.769	INTRON for
3L	11053675	3L_11053675_SNP [dm3] 3L_11060575_SNP [dm6]	A	T	3.235e^-4	0.769	NON_SYNONYMOUS_CODING CG6321 UPSTREAM Blos2 DOWNSTREAM CG7888
3R	1897277	3R_1897277_SNP [dm3] 3R_6071555_SNP [dm6]	G	A	3.237e^-4	0.769	INTERGENIC
3L	16668673	3L_16668673_SNP [dm3] 3L_16675573_SNP [dm6]	C	T	3.237e^-4	0.769	DOWNSTREAM Lasp INTRON CG13032	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8482627	2R_8482627_SNP [dm3] 2R_12595122_SNP [dm6]	T	A	3.243e^-4	0.769	INTRON Amph EXON CR43909
2L	1712694	2L_1712694_SNP [dm3] 2L_1712694_SNP [dm6]	C	T	3.244e^-4	0.769	SYNONYMOUS_CODING frtz	TF binding site mE1_TFBS_chinmo
3L	11925887	3L_11925887_SNP [dm3] 3L_11932787_SNP [dm6]	T	C	3.244e^-4	0.769	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	701810	2L_701810_SNP [dm3] 2L_701810_SNP [dm6]	T	C	3.248e^-4	0.769	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
4	503111	4_503111_SNP [dm3] 4_482485_SNP [dm6]	T	C	3.251e^-4	0.769	SPLICE_SITE_REGION Asator START_GAINED Asator UTR_5_PRIME Asator UPSTREAM Asator INTRON Asator	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	16647365	3L_16647365_DEL [dm3] 3L_16654265_DEL [dm6]	CGTA	G	3.255e^-4	0.769	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
3L	12305245	3L_12305245_SNP [dm3] 3L_12312145_SNP [dm6]	G	A	3.264e^-4	0.769	DOWNSTREAM CG44355 INTERGENIC
X	16359483	X_16359483_SNP [dm3] X_16465450_SNP [dm6]	A	G	3.270e^-4	0.769	INTRON para
3R	10833625	3R_10833625_SNP [dm3] 3R_15007903_SNP [dm6]	A	C	3.272e^-4	0.769	INTERGENIC
2R	11999790	2R_11999790_SNP [dm3] 2R_16112285_SNP [dm6]	T	G	3.273e^-4	0.769	NON_SYNONYMOUS_CODING Asph
2R	13212344	2R_13212344_SNP [dm3] 2R_17324839_SNP [dm6]	T	G	3.283e^-4	0.769	INTRON mbl
2R	13212357	2R_13212357_SNP [dm3] 2R_17324852_SNP [dm6]	A	G	3.283e^-4	0.769	INTRON mbl
3R	18172105	3R_18172105_SNP [dm3] 3R_22346383_SNP [dm6]	G	A	3.287e^-4	0.769	INTERGENIC
3R	26174116	3R_26174116_DEL [dm3] 3R_30348394_DEL [dm6]	CTATGATGGATCCC...	C	3.290e^-4	0.769	INTRON hdc
3L	11351539	3L_11351539_SNP [dm3] 3L_11358439_SNP [dm6]	G	A	3.296e^-4	0.769	INTERGENIC	TF binding site mE1_TFBS_cad
2L	17797168	2L_17797168_SNP [dm3] 2L_17797168_SNP [dm6]	C	G	3.297e^-4	0.769	INTRON CadN2
2L	16541455	2L_16541455_SNP [dm3] 2L_16541455_SNP [dm6]	A	G	3.302e^-4	0.769	INTERGENIC
X	21952338	X_21952338_SNP [dm3] X_22550502_SNP [dm6]	T	C	3.304e^-4	0.769	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13433731	2L_13433731_SNP [dm3] 2L_13433731_SNP [dm6]	T	A	3.314e^-4	0.771	INTRON CG42784
X	600621	X_600621_SNP [dm3] X_706588_SNP [dm6]	C	T	3.335e^-4	0.772	INTRON sdk
2R	9964048	2R_9964048_SNP [dm3] 2R_14076543_SNP [dm6]	A	G	3.336e^-4	0.772	INTRON Prosap
3R	8617915	3R_8617915_SNP [dm3] 3R_12792193_SNP [dm6]	G	A	3.337e^-4	0.772	INTERGENIC
3R	8618577	3R_8618577_SNP [dm3] 3R_12792855_SNP [dm6]	G	A	3.337e^-4	0.772	INTERGENIC
2R	20699815	2R_20699815_SNP [dm3] 2R_24812292_SNP [dm6]	A	T	3.346e^-4	0.773	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	22651456	3L_22651456_SNP [dm3] 3L_22658356_SNP [dm6]	G	A	3.370e^-4	0.777	INTERGENIC
2L	10030169	2L_10030169_SNP [dm3] 2L_10030169_SNP [dm6]	C	T	3.373e^-4	0.777	DOWNSTREAM CG13127 INTERGENIC
X	19297391	X_19297391_SNP [dm3] X_19403358_SNP [dm6]	A	T	3.373e^-4	0.777	INTRON kek5
3R	1719197	3R_1719197_DEL [dm3] 3R_5893475_DEL [dm6]	AA	A	3.390e^-4	0.779	INTRON CG34113
X	669799	X_669799_SNP [dm3] X_775766_SNP [dm6]	A	G	3.402e^-4	0.779	INTRON fz3
2R	10252809	2R_10252809_SNP [dm3] 2R_14365304_SNP [dm6]	C	T	3.404e^-4	0.779	SYNONYMOUS_CODING Tfb1 UPSTREAM CG34184
3R	11718998	3R_11718998_SNP [dm3] 3R_15893276_SNP [dm6]	G	A	3.406e^-4	0.779	INTRON CG14877
2L	7251413	2L_7251413_SNP [dm3] 2L_7251413_SNP [dm6]	T	G	3.407e^-4	0.779	INTRON CG13786
X	9231421	X_9231421_DEL [dm3] X_9337388_DEL [dm6]	AATAATA	A	3.408e^-4	0.779	INTRON CG34449	TF binding site mE1_TFBS_HSA
3R	10050590	3R_10050590_SNP [dm3] 3R_14224868_SNP [dm6]	C	G	3.416e^-4	0.779	UPSTREAM Sp212 DOWNSTREAM CG9631 INTERGENIC
2L	1619460	2L_1619460_SNP [dm3] 2L_1619460_SNP [dm6]	T	C	3.425e^-4	0.779	EXON CR44603
2L	20063526	2L_20063526_SNP [dm3] 2L_20063526_SNP [dm6]	G	T	3.443e^-4	0.779	SYNONYMOUS_CODING lok UTR_3_PRIME lok DOWNSTREAM vls	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2L	4280558	2L_4280558_SNP [dm3] 2L_4280558_SNP [dm6]	T	A	3.443e^-4	0.779	INTRON Art2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2293169	3L_2293169_SNP [dm3] 3L_2293169_SNP [dm6]	A	G	3.453e^-4	0.779	INTRON MsR2
3R	14856001	3R_14856001_SNP [dm3] 3R_19030279_SNP [dm6]	T	C	3.454e^-4	0.779	SYNONYMOUS_CODING Prp18 DOWNSTREAM P5cr	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9771512	3R_9771512_SNP [dm3] 3R_13945790_SNP [dm6]	A	G	3.456e^-4	0.779	UTR_5_PRIME Art6
3L	15506317	3L_15506317_SNP [dm3] 3L_15513217_SNP [dm6]	T	C	3.469e^-4	0.779	DOWNSTREAM Eip71CD INTERGENIC
2L	13433914	2L_13433914_SNP [dm3] 2L_13433914_SNP [dm6]	C	G	3.473e^-4	0.779	INTRON CG42784	TF binding site mE1_TFBS_cad
3L	15789611	3L_15789611_SNP [dm3] 3L_15796511_SNP [dm6]	A	C	3.475e^-4	0.779	INTERGENIC
2L	19810581	2L_19810581_SNP [dm3] 2L_19810581_SNP [dm6]	T	A	3.479e^-4	0.779	UPSTREAM snRNA:U4:38AB INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	16872533	3L_16872533_SNP [dm3] 3L_16879433_SNP [dm6]	C	T	3.491e^-4	0.779	DOWNSTREAM CG32170 INTRON Lmpt
2R	15460518	2R_15460518_SNP [dm3] 2R_19573013_SNP [dm6]	A	G	3.496e^-4	0.779	INTRON sm	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	17096481	3L_17096481_SNP [dm3] 3L_17103381_SNP [dm6]	G	A	3.500e^-4	0.779	INTRON Rbp6
X	15794685	X_15794685_SNP [dm3] X_15900652_SNP [dm6]	A	G	3.501e^-4	0.779	INTRON shi
2L	7536931	2L_7536931_SNP [dm3] 2L_7536931_SNP [dm6]	C	A	3.502e^-4	0.779	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5661400	2L_5661400_SNP [dm3] 2L_5661400_SNP [dm6]	G	A	3.514e^-4	0.779	DOWNSTREAM CR44821 INTERGENIC
2L	16930009	2L_16930009_SNP [dm3] 2L_16930009_SNP [dm6]	C	T	3.514e^-4	0.779	INTERGENIC
2L	8174528	2L_8174528_SNP [dm3] 2L_8174528_SNP [dm6]	T	C	3.515e^-4	0.779	SPLICE_SITE_REGION Piezo INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9837215	2L_9837215_SNP [dm3] 2L_9837215_SNP [dm6]	T	C	3.517e^-4	0.779	INTRON nAChRalpha6
X	6538262	X_6538262_SNP [dm3] X_6644229_SNP [dm6]	G	C	3.518e^-4	0.779	INTRON pigs	TF binding site mE1_TFBS_HSA
3L	3991271	3L_3991271_SNP [dm3] 3L_3991271_SNP [dm6]	G	A	3.521e^-4	0.779	UTR_3_PRIME scrt
2L	20044978	2L_20044978_DEL [dm3] 2L_20044978_DEL [dm6]	TT	T	3.522e^-4	0.779	INTRON sNPF
2L	20044981	2L_20044981_MNP [dm3] 2L_20044981_MNP [dm6]	GAA	TGC	3.522e^-4	0.779	INTRON sNPF
2L	20044988	2L_20044988_SNP [dm3] 2L_20044988_SNP [dm6]	A	C	3.522e^-4	0.779	INTRON sNPF
2L	20044998	2L_20044998_SNP [dm3] 2L_20044998_SNP [dm6]	A	T	3.522e^-4	0.779	INTRON sNPF
2L	20045000	2L_20045000_SNP [dm3] 2L_20045000_SNP [dm6]	C	T	3.522e^-4	0.779	INTRON sNPF
2R	10250859	2R_10250859_SNP [dm3] 2R_14363354_SNP [dm6]	A	G	3.526e^-4	0.779	UTR_5_PRIME Tfb1 DOWNSTREAM Arc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	15207048	2R_15207048_SNP [dm3] 2R_19319543_SNP [dm6]	G	A	3.531e^-4	0.779	SYNONYMOUS_CODING Rgk1
3L	15746754	3L_15746754_SNP [dm3] 3L_15753654_SNP [dm6]	C	A	3.547e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17797268	2L_17797268_SNP [dm3] 2L_17797268_SNP [dm6]	C	G	3.548e^-4	0.781	INTRON CadN2
2L	2690611	2L_2690611_SNP [dm3] 2L_2690611_SNP [dm6]	C	T	3.556e^-4	0.782	INTRON CG31690
2L	20139737	2L_20139737_SNP [dm3] 2L_20139737_SNP [dm6]	A	C	3.563e^-4	0.782	INTERGENIC
2L	5559779	2L_5559779_SNP [dm3] 2L_5559779_SNP [dm6]	A	T	3.566e^-4	0.782	DOWNSTREAM GluRIIA INTRON GluRIIB	TF binding site mE1_TFBS_inv
3L	1045299	3L_1045299_SNP [dm3] 3L_1045299_SNP [dm6]	T	C	3.578e^-4	0.783	INTRON bab1
2L	19855337	2L_19855337_DEL [dm3] 2L_19855337_DEL [dm6]	AT	A	3.582e^-4	0.783	INTRON sick
3R	11786351	3R_11786351_SNP [dm3] 3R_15960629_SNP [dm6]	C	T	3.583e^-4	0.783	UTR_3_PRIME Sap47 DOWNSTREAM Sap47
3L	1869032	3L_1869032_SNP [dm3] 3L_1869032_SNP [dm6]	T	A	3.589e^-4	0.784	UTR_3_PRIME CG12025 UPSTREAM CG13924 DOWNSTREAM CG12025
3L	19439473	3L_19439473_DEL [dm3] 3L_19446373_DEL [dm6]	AA	A	3.598e^-4	0.784	UTR_5_PRIME CG33062 UPSTREAM Chd3 INTRON CG33062	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	13212313	2R_13212313_SNP [dm3] 2R_17324808_SNP [dm6]	T	C	3.600e^-4	0.784	INTRON mbl
3R	9735857	3R_9735857_SNP [dm3] 3R_13910135_SNP [dm6]	G	A	3.614e^-4	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2L	20117852	2L_20117852_SNP [dm3] 2L_20117852_SNP [dm6]	C	A	3.632e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3R	11407487	3R_11407487_SNP [dm3] 3R_15581765_SNP [dm6]	C	T	3.632e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	2794747	2L_2794747_SNP [dm3] 2L_2794747_SNP [dm6]	A	T	3.635e^-4	0.787	INTRON Syt1
3L	16666850	3L_16666850_SNP [dm3] 3L_16673750_SNP [dm6]	G	A	3.635e^-4	0.787	UPSTREAM CG13032 & 1 other INTERGENIC	regulatory region REDfly_CRMs
2L	21029742	2L_21029742_SNP [dm3] 2L_21029742_SNP [dm6]	A	G	3.642e^-4	0.787	INTRON CG42238
3R	9703079	3R_9703079_SNP [dm3] 3R_13877357_SNP [dm6]	G	A	3.645e^-4	0.787	UPSTREAM E5 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	1042117	X_1042117_SNP [dm3] X_1148084_SNP [dm6]	G	T	3.647e^-4	0.787	INTERGENIC
3R	14041228	3R_14041228_SNP [dm3] 3R_18215506_SNP [dm6]	C	A	3.653e^-4	0.787	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC
3R	13918674	3R_13918674_SNP [dm3] 3R_18092952_SNP [dm6]	T	C	3.660e^-4	0.787	INTRON sr	TF binding site BDTNP1_TFBS_twi
3L	11134116	3L_11134116_SNP [dm3] 3L_11141016_SNP [dm6]	G	T	3.661e^-4	0.787	INTRON CG32082
3L	3733334	3L_3733334_SNP [dm3] 3L_3733334_SNP [dm6]	G	C	3.664e^-4	0.787	INTRON CG32264
2R	13212486	2R_13212486_SNP [dm3] 2R_17324981_SNP [dm6]	G	T	3.669e^-4	0.787	INTRON mbl
2L	8098984	2L_8098984_SNP [dm3] 2L_8098984_SNP [dm6]	C	T	3.673e^-4	0.787	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3766716	2L_3766716_DEL [dm3] 2L_3766716_DEL [dm6]	AA	A	3.705e^-4	0.79	UPSTREAM mir-1004 DOWNSTREAM CG43703 INTRON CG43707	TF binding site mE1_TFBS_Trl
X	19197180	X_19197180_SNP [dm3] X_19303147_SNP [dm6]	A	T	3.705e^-4	0.79	INTRON CG8051
X	19197185	X_19197185_SNP [dm3] X_19303152_SNP [dm6]	G	C	3.705e^-4	0.79	INTRON CG8051
X	19197275	X_19197275_DEL [dm3] X_19303242_DEL [dm6]	GTAA	G	3.705e^-4	0.79	INTRON CG8051
2L	20125022	2L_20125022_SNP [dm3] 2L_20125022_SNP [dm6]	C	T	3.706e^-4	0.79	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18824273	3L_18824273_SNP [dm3] 3L_18831173_SNP [dm6]	G	A	3.709e^-4	0.79	SYNONYMOUS_CODING Indy	TF binding site mE1_TFBS_cad
X	8048252	X_8048252_SNP [dm3] X_8154219_SNP [dm6]	A	G	3.739e^-4	0.792	SYNONYMOUS_CODING CG18262 DOWNSTREAM Traf6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1699420	3L_1699420_SNP [dm3] 3L_1699420_SNP [dm6]	C	T	3.745e^-4	0.792	INTRON CG7991	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	9255501	2R_9255501_SNP [dm3] 2R_13367996_SNP [dm6]	C	A	3.746e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	9255503	2R_9255503_SNP [dm3] 2R_13367998_SNP [dm6]	C	A	3.746e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10738347	3L_10738347_SNP [dm3] 3L_10745247_SNP [dm6]	G	C	3.753e^-4	0.792	INTERGENIC
3L	10738354	3L_10738354_SNP [dm3] 3L_10745254_SNP [dm6]	A	T	3.753e^-4	0.792	INTERGENIC
3R	10215282	3R_10215282_SNP [dm3] 3R_14389560_SNP [dm6]	A	C	3.753e^-4	0.792	INTERGENIC
2R	4519067	2R_4519067_SNP [dm3] 2R_8631562_SNP [dm6]	T	G	3.764e^-4	0.792	INTRON CG8635	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	21177512	3L_21177512_SNP [dm3] 3L_21184412_SNP [dm6]	G	T	3.766e^-4	0.792	UTR_3_PRIME CG42337 DOWNSTREAM CG42337
X	604704	X_604704_SNP [dm3] X_710671_SNP [dm6]	A	G	3.767e^-4	0.792	INTRON sdk	transposable element FlyBase
2R	20698085	2R_20698085_SNP [dm3] 2R_24810562_SNP [dm6]	G	T	3.778e^-4	0.792	DOWNSTREAM CG42851 INTERGENIC	regulatory region FlyBase REDfly_CRMs
2L	8098983	2L_8098983_SNP [dm3] 2L_8098983_SNP [dm6]	T	A	3.783e^-4	0.792	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	7493888	2L_7493888_SNP [dm3] 2L_7493888_SNP [dm6]	C	G	3.790e^-4	0.792	INTRON Ziz
3R	4298458	3R_4298458_SNP [dm3] 3R_8472736_SNP [dm6]	G	A	3.795e^-4	0.792	INTRON CG45263	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	9687975	3R_9687975_SNP [dm3] 3R_13862253_SNP [dm6]	C	A	3.799e^-4	0.792	INTERGENIC
2L	13433767	2L_13433767_INS [dm3] 2L_13433767_INS [dm6]	A	ATTTAATTTA	3.800e^-4	0.792	INTRON CG42784
2L	18198109	2L_18198109_INS [dm3] 2L_18198109_INS [dm6]	T	TT	3.801e^-4	0.792	INTRON CG42750
2L	7458611	2L_7458611_SNP [dm3] 2L_7458611_SNP [dm6]	C	G	3.805e^-4	0.792	SYNONYMOUS_CODING Gr28b INTRON Gr28b
2R	3181156	2R_3181156_SNP [dm3] 2R_7293651_SNP [dm6]	C	T	3.807e^-4	0.792	INTRON pwn
4	216261	4_216261_SNP [dm3] 4_195635_SNP [dm6]	C	G	3.810e^-4	0.792	EXON CR44441
X	6023338	X_6023338_SNP [dm3] X_6129305_SNP [dm6]	T	C	3.821e^-4	0.792	INTRON Ca-alpha1T
2L	6493301	2L_6493301_SNP [dm3] 2L_6493301_SNP [dm6]	C	T	3.825e^-4	0.792	SYNONYMOUS_CODING CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12897264	3R_12897264_SNP [dm3] 3R_17071542_SNP [dm6]	C	T	3.827e^-4	0.792	SYNONYMOUS_CODING Ns1
2L	17765854	2L_17765854_SNP [dm3] 2L_17765854_SNP [dm6]	C	T	3.829e^-4	0.792	INTRON CadN
2L	5934641	2L_5934641_SNP [dm3] 2L_5934641_SNP [dm6]	C	G	3.831e^-4	0.792	INTRON dsf	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	4775403	3L_4775403_SNP [dm3] 3L_4775403_SNP [dm6]	G	T	3.833e^-4	0.792	INTRON RhoGEF64C
3R	10215275	3R_10215275_SNP [dm3] 3R_14389553_SNP [dm6]	A	T	3.850e^-4	0.794	INTERGENIC
2L	16927535	2L_16927535_SNP [dm3] 2L_16927535_SNP [dm6]	C	T	3.851e^-4	0.794	INTERGENIC
3L	938400	3L_938400_SNP [dm3] 3L_938400_SNP [dm6]	A	C	3.867e^-4	0.795	INTRON Glut1
2L	8445883	2L_8445883_SNP [dm3] 2L_8445883_SNP [dm6]	G	A	3.882e^-4	0.795	UTR_3_PRIME U26 DOWNSTREAM U26 & 1 other
2L	8445885	2L_8445885_SNP [dm3] 2L_8445885_SNP [dm6]	A	C	3.882e^-4	0.795	UTR_3_PRIME U26 DOWNSTREAM U26 & 1 other
2L	8398451	2L_8398451_DEL [dm3] 2L_8398451_DEL [dm6]	CAATAC	C	3.890e^-4	0.795	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
3L	12303919	3L_12303919_SNP [dm3] 3L_12310819_SNP [dm6]	A	G	3.897e^-4	0.795	UTR_5_PRIME CG44355
2L	2797180	2L_2797180_SNP [dm3] 2L_2797180_SNP [dm6]	G	A	3.897e^-4	0.795	UPSTREAM CR43821 INTRON Syt1	TF binding site mE1_TFBS_Trl
2L	11917403	2L_11917403_SNP [dm3] 2L_11917403_SNP [dm6]	C	T	3.905e^-4	0.795	INTRON Pde1c
3L	18068630	3L_18068630_SNP [dm3] 3L_18075530_SNP [dm6]	C	T	3.918e^-4	0.795	UPSTREAM CR45391 INTERGENIC
3R	13891198	3R_13891198_SNP [dm3] 3R_18065476_SNP [dm6]	C	A	3.921e^-4	0.795	INTERGENIC
3L	6904448	3L_6904448_INS [dm3] 3L_6911348_INS [dm6]	C	CC	3.934e^-4	0.795	DOWNSTREAM Prat2 INTERGENIC
2L	5625086	2L_5625086_SNP [dm3] 2L_5625086_SNP [dm6]	C	T	3.943e^-4	0.795	INTERGENIC
3R	9854753	3R_9854753_SNP [dm3] 3R_14029031_SNP [dm6]	T	C	3.944e^-4	0.795	UPSTREAM Cyp6d5 INTRON rdx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2L	3298766	2L_3298766_SNP [dm3] 2L_3298766_SNP [dm6]	C	T	3.956e^-4	0.795	INTRON CG9663	TF binding site BDTNP1_TFBS_da
2L	4195375	2L_4195375_SNP [dm3] 2L_4195375_SNP [dm6]	G	A	3.959e^-4	0.795	INTRON CG3714	TF binding site mE1_TFBS_Kr
2R	13607815	2R_13607815_SNP [dm3] 2R_17720310_SNP [dm6]	C	A	3.962e^-4	0.795	UPSTREAM CG6424 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26174152	3R_26174152_DEL [dm3] 3R_30348430_DEL [dm6]	CC	C	3.972e^-4	0.795	INTRON hdc
2R	12793279	2R_12793279_SNP [dm3] 2R_16905774_SNP [dm6]	T	G	3.984e^-4	0.795	INTERGENIC
2L	5860939	2L_5860939_SNP [dm3] 2L_5860939_SNP [dm6]	C	T	3.986e^-4	0.795	SYNONYMOUS_CODING rau	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16811214	3R_16811214_SNP [dm3] 3R_20985492_SNP [dm6]	A	T	3.987e^-4	0.795	UPSTREAM Calx INTRON Calx
3R	18233677	3R_18233677_SNP [dm3] 3R_22407955_SNP [dm6]	T	A	3.997e^-4	0.795	SPLICE_SITE_REGION CG13855 DOWNSTREAM CG13850 INTRON CG13855
3L	16647393	3L_16647393_SNP [dm3] 3L_16654293_SNP [dm6]	T	G	4.000e^-4	0.795	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
3L	16647411	3L_16647411_INS [dm3] 3L_16654311_INS [dm6]	A	TCG	4.000e^-4	0.795	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
3L	18209302	3L_18209302_INS [dm3] 3L_18216202_INS [dm6]	G	GG	4.007e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8377077	2L_8377077_SNP [dm3] 2L_8377077_SNP [dm6]	G	C	4.008e^-4	0.795	UTR_5_PRIME CG17294 UPSTREAM CG13390	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10221419	3L_10221419_SNP [dm3] 3L_10228319_SNP [dm6]	G	A	4.010e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	11691859	3L_11691859_SNP [dm3] 3L_11698759_SNP [dm6]	G	C	4.015e^-4	0.795	SYNONYMOUS_CODING CG6053 DOWNSTREAM CG11658	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8064497	2L_8064497_SNP [dm3] 2L_8064497_SNP [dm6]	A	G	4.036e^-4	0.795	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10050640	3R_10050640_SNP [dm3] 3R_14224918_SNP [dm6]	A	G	4.047e^-4	0.795	UPSTREAM Sp212 DOWNSTREAM CG9631 INTERGENIC
X	16359522	X_16359522_SNP [dm3] X_16465489_SNP [dm6]	G	A	4.048e^-4	0.795	INTRON para
X	20362505	X_20362505_SNP [dm3] X_20491478_SNP [dm6]	T	G	4.051e^-4	0.795	UPSTREAM RhoGAP19D INTRON RhoGAP19D
2L	5861449	2L_5861449_SNP [dm3] 2L_5861449_SNP [dm6]	G	A	4.052e^-4	0.795	SYNONYMOUS_CODING rau	TF binding site mE1_TFBS_cad
2L	10174896	2L_10174896_SNP [dm3] 2L_10174896_SNP [dm6]	G	A	4.055e^-4	0.795	DOWNSTREAM CG13137 INTRON CG44153
2L	10635555	2L_10635555_SNP [dm3] 2L_10635555_SNP [dm6]	T	G	4.057e^-4	0.795	INTRON CG7329
2L	3296816	2L_3296816_SNP [dm3] 2L_3296816_SNP [dm6]	A	G	4.061e^-4	0.795	SYNONYMOUS_CODING CG9663
2R	13216606	2R_13216606_SNP [dm3] 2R_17329101_SNP [dm6]	T	C	4.068e^-4	0.795	INTRON mbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13216612	2R_13216612_SNP [dm3] 2R_17329107_SNP [dm6]	A	C	4.068e^-4	0.795	INTRON mbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4755403	2L_4755403_SNP [dm3] 2L_4755403_SNP [dm6]	C	T	4.068e^-4	0.795	INTRON CG15630
3R	17363633	3R_17363633_SNP [dm3] 3R_21537911_SNP [dm6]	G	A	4.072e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	14982684	3R_14982684_SNP [dm3] 3R_19156962_SNP [dm6]	T	C	4.081e^-4	0.795	UTR_5_PRIME CG11779 UPSTREAM nos & 1 other INTRON CG11779	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	4087258	2L_4087258_SNP [dm3] 2L_4087258_SNP [dm6]	A	T	4.093e^-4	0.795	INTRON ed
2R	13212339	2R_13212339_DEL [dm3] 2R_17324834_DEL [dm6]	AGATA	A	4.097e^-4	0.795	INTRON mbl
2R	4185215	2R_4185215_INS [dm3] 2R_8297710_INS [dm6]	A	ACCC	4.102e^-4	0.795	UPSTREAM mir-280 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8902029	3L_8902029_SNP [dm3] 3L_8908929_SNP [dm6]	C	T	4.111e^-4	0.795	NON_SYNONYMOUS_CODING mfr SPLICE_SITE_REGION mfr SYNONYMOUS_CODING mfr INTRON mfr	TF binding site mE1_TFBS_sens
3R	14287621	3R_14287621_SNP [dm3] 3R_18461899_SNP [dm6]	A	G	4.114e^-4	0.795	INTRON fru
3R	18450134	3R_18450134_SNP [dm3] 3R_22624412_SNP [dm6]	T	G	4.115e^-4	0.795	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	7922344	X_7922344_SNP [dm3] X_8028311_SNP [dm6]	T	C	4.116e^-4	0.795	DOWNSTREAM Tbh INTERGENIC
3R	9754383	3R_9754383_SNP [dm3] 3R_13928661_SNP [dm6]	T	C	4.118e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9754386	3R_9754386_SNP [dm3] 3R_13928664_SNP [dm6]	A	G	4.118e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10030079	2L_10030079_SNP [dm3] 2L_10030079_SNP [dm6]	T	C	4.119e^-4	0.795	DOWNSTREAM CG13127 INTERGENIC
2L	3071552	2L_3071552_SNP [dm3] 2L_3071552_SNP [dm6]	A	G	4.131e^-4	0.795	INTRON toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13433835	2L_13433835_SNP [dm3] 2L_13433835_SNP [dm6]	A	C	4.134e^-4	0.795	INTRON CG42784	TF binding site mE1_TFBS_cad
2L	6041094	2L_6041094_SNP [dm3] 2L_6041094_SNP [dm6]	C	T	4.135e^-4	0.795	NON_SYNONYMOUS_CODING CG31643 DOWNSTREAM ade2
3R	10215259	3R_10215259_SNP [dm3] 3R_14389537_SNP [dm6]	A	G	4.138e^-4	0.795	INTERGENIC
3R	10215278	3R_10215278_DEL [dm3] 3R_14389556_DEL [dm6]	TC	T	4.138e^-4	0.795	INTERGENIC
3R	10215302	3R_10215302_SNP [dm3] 3R_14389580_SNP [dm6]	T	C	4.138e^-4	0.795	INTERGENIC
2L	15612408	2L_15612408_SNP [dm3] 2L_15612408_SNP [dm6]	C	A	4.160e^-4	0.795	UPSTREAM CG15255 DOWNSTREAM CG11864 INTERGENIC
3R	2363676	3R_2363676_SNP [dm3] 3R_6537954_SNP [dm6]	C	T	4.164e^-4	0.795	INTRON dpr11
2R	6726485	2R_6726485_SNP [dm3] 2R_10838980_SNP [dm6]	A	C	4.183e^-4	0.795	UPSTREAM CG7686 DOWNSTREAM CG30015 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9732925	3L_9732925_SNP [dm3] 3L_9739825_SNP [dm6]	A	T	4.188e^-4	0.795	UPSTREAM CG42268 INTRON CG42268	TF binding site mE1_TFBS_cad
3L	9732928	3L_9732928_SNP [dm3] 3L_9739828_SNP [dm6]	C	T	4.188e^-4	0.795	UPSTREAM CG42268 INTRON CG42268	TF binding site mE1_TFBS_cad
3L	9732936	3L_9732936_SNP [dm3] 3L_9739836_SNP [dm6]	T	A	4.188e^-4	0.795	UPSTREAM CG42268 INTRON CG42268	TF binding site mE1_TFBS_cad
3L	8142306	3L_8142306_SNP [dm3] 3L_8149206_SNP [dm6]	A	C	4.196e^-4	0.795	INTRON CG13676
X	596102	X_596102_SNP [dm3] X_702069_SNP [dm6]	T	A	4.200e^-4	0.795	INTRON sdk
3R	17555413	3R_17555413_SNP [dm3] 3R_21729691_SNP [dm6]	G	C	4.201e^-4	0.795	EXON CR43096
3L	16821480	3L_16821480_SNP [dm3] 3L_16828380_SNP [dm6]	G	A	4.202e^-4	0.795	INTRON CG13024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15401201	2L_15401201_SNP [dm3] 2L_15401201_SNP [dm6]	G	A	4.210e^-4	0.795	UPSTREAM CR45374 INTERGENIC
3L	6998628	3L_6998628_SNP [dm3] 3L_7005528_SNP [dm6]	T	C	4.212e^-4	0.795	INTRON Mp
X	17927883	X_17927883_SNP [dm3] X_18033850_SNP [dm6]	G	A	4.216e^-4	0.795	INTRON Sh
2L	18500228	2L_18500228_SNP [dm3] 2L_18500228_SNP [dm6]	T	A	4.216e^-4	0.795	INTRON kon
2L	20042613	2L_20042613_SNP [dm3] 2L_20042613_SNP [dm6]	C	A	4.219e^-4	0.795	INTRON sNPF
2R	7043284	2R_7043284_DEL [dm3] 2R_11155779_DEL [dm6]	ACA	C	4.222e^-4	0.795	DOWNSTREAM CG13230 INTRON CG13229
3L	12303370	3L_12303370_SNP [dm3] 3L_12310270_SNP [dm6]	C	A	4.223e^-4	0.795	UPSTREAM CG44355 INTERGENIC
3R	14287616	3R_14287616_SNP [dm3] 3R_18461894_SNP [dm6]	T	A	4.223e^-4	0.795	INTRON fru
2L	9473306	2L_9473306_SNP [dm3] 2L_9473306_SNP [dm6]	A	G	4.230e^-4	0.795	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	11743719	3L_11743719_SNP [dm3] 3L_11750619_SNP [dm6]	A	C	4.232e^-4	0.795	UPSTREAM Gr68a INTRON CG6024
3L	19997324	3L_19997324_SNP [dm3] 3L_20004224_SNP [dm6]	G	A	4.232e^-4	0.795	NON_SYNONYMOUS_CODING CG7668	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	6966716	2R_6966716_SNP [dm3] 2R_11079211_SNP [dm6]	G	A	4.238e^-4	0.795	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20103770	2L_20103770_SNP [dm3] 2L_20103770_SNP [dm6]	A	G	4.240e^-4	0.795	SYNONYMOUS_CODING CG13970 DOWNSTREAM Kua
X	15486296	X_15486296_INS [dm3] X_15592263_INS [dm6]	G	GAGG	4.246e^-4	0.795	INTRON CG9220	TF binding site BDTNP1_TFBS_dl
2R	8837368	2R_8837368_SNP [dm3] 2R_12949863_SNP [dm6]	C	T	4.247e^-4	0.795	SYNONYMOUS_CODING CG44251 DOWNSTREAM CG44250	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1633013	2L_1633013_SNP [dm3] 2L_1633013_SNP [dm6]	A	T	4.250e^-4	0.795	INTERGENIC
2L	13464023	2L_13464023_SNP [dm3] 2L_13464023_SNP [dm6]	A	T	4.251e^-4	0.795	INTRON CG42784
2L	4807215	2L_4807215_SNP [dm3] 2L_4807215_SNP [dm6]	G	A	4.260e^-4	0.795	INTERGENIC
3R	14083054	3R_14083054_SNP [dm3] 3R_18257332_SNP [dm6]	G	C	4.261e^-4	0.795	SYNONYMOUS_CODING Tgs1 UTR_3_PRIME moi
3L	18626730	3L_18626730_SNP [dm3] 3L_18633630_SNP [dm6]	T	G	4.263e^-4	0.795	INTRON MYPT-75D
2R	13212309	2R_13212309_SNP [dm3] 2R_17324804_SNP [dm6]	T	C	4.268e^-4	0.795	INTRON mbl
2R	13212331	2R_13212331_DEL [dm3] 2R_17324826_DEL [dm6]	CG	A	4.268e^-4	0.795	INTRON mbl
2R	13212335	2R_13212335_SNP [dm3] 2R_17324830_SNP [dm6]	G	C	4.268e^-4	0.795	INTRON mbl
2R	13212336	2R_13212336_DEL [dm3] 2R_17324831_DEL [dm6]	AG	A	4.268e^-4	0.795	INTRON mbl
2L	16541814	2L_16541814_SNP [dm3] 2L_16541814_SNP [dm6]	G	T	4.270e^-4	0.795	UPSTREAM CG31816 INTERGENIC
X	19878860	X_19878860_SNP [dm3] X_19984827_SNP [dm6]	G	T	4.301e^-4	0.795	INTERGENIC
2R	9963539	2R_9963539_SNP [dm3] 2R_14076034_SNP [dm6]	G	A	4.305e^-4	0.795	INTRON Prosap
2L	16623279	2L_16623279_SNP [dm3] 2L_16623279_SNP [dm6]	A	T	4.305e^-4	0.795	INTRON CG42389
3L	6295170	3L_6295170_SNP [dm3] 3L_6302070_SNP [dm6]	G	A	4.308e^-4	0.795	DOWNSTREAM CR45420 INTERGENIC
2L	8373034	2L_8373034_SNP [dm3] 2L_8373034_SNP [dm6]	C	G	4.308e^-4	0.795	SYNONYMOUS_CODING CG17292	TF binding site mE1_TFBS_HSA
X	584100	X_584100_SNP [dm3] X_690067_SNP [dm6]	C	G	4.308e^-4	0.795	INTRON sdk	TF binding site BDTNP1_TFBS_da
2R	11774108	2R_11774108_SNP [dm3] 2R_15886603_SNP [dm6]	A	C	4.309e^-4	0.795	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	17281440	2R_17281440_SNP [dm3] 2R_21393935_SNP [dm6]	T	A	4.313e^-4	0.795	UTR_3_PRIME Sdc DOWNSTREAM Sdc

By genomic position
Variant impact
Gene name

Microbiota_OTU013 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results