DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.423e^-11)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

4516 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	24161468	3R_24161468_SNP [dm3] 3R_28335746_SNP [dm6]	G	A	6.637e^-15	4.116e^-9	UPSTREAM larp INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	24161496	3R_24161496_SNP [dm3] 3R_28335774_SNP [dm6]	A	T	6.637e^-15	4.116e^-9	UPSTREAM larp INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	24161510	3R_24161510_SNP [dm3] 3R_28335788_SNP [dm6]	T	A	6.637e^-15	4.116e^-9	UPSTREAM larp INTRON larp	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	7701085	3R_7701085_SNP [dm3] 3R_11875363_SNP [dm6]	T	C	1.438e^-9	6.688e^-4	INTERGENIC
3R	25556582	3R_25556582_SNP [dm3] 3R_29730860_SNP [dm6]	T	A	1.883e^-9	7.006e^-4	INTRON Kul	TF binding site mE1_TFBS_cad
2R	11962724	2R_11962724_SNP [dm3] 2R_16075219_SNP [dm6]	C	T	2.497e^-9	7.195e^-4	INTERGENIC
3R	25556580	3R_25556580_SNP [dm3] 3R_29730858_SNP [dm6]	A	T	2.707e^-9	7.195e^-4	INTRON Kul	TF binding site mE1_TFBS_cad
3R	9893615	3R_9893615_SNP [dm3] 3R_14067893_SNP [dm6]	C	A	4.275e^-9	9.943e^-4	INTRON foxo
3R	18155468	3R_18155468_SNP [dm3] 3R_22329746_SNP [dm6]	G	C	5.589e^-9	0.001	NON_SYNONYMOUS_CODING CG7080	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9504445	3R_9504445_SNP [dm3] 3R_13678723_SNP [dm6]	G	A	8.958e^-9	0.002	DOWNSTREAM omd INTRON lkb1
3R	9510594	3R_9510594_SNP [dm3] 3R_13684872_SNP [dm6]	G	A	1.241e^-8	0.002	INTRON omd & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	6345987	X_6345987_SNP [dm3] X_6451954_SNP [dm6]	T	C	2.677e^-8	0.004	INTRON CG42340
X	13041571	X_13041571_INS [dm3] X_13147538_INS [dm6]	A	ATAA	2.766e^-8	0.004	INTRON CG32645
3R	17320929	3R_17320929_SNP [dm3] 3R_21495207_SNP [dm6]	C	A	3.019e^-8	0.004	INTERGENIC	TF binding site mE1_TFBS_cad
3R	17320933	3R_17320933_SNP [dm3] 3R_21495211_SNP [dm6]	A	C	3.019e^-8	0.004	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10728342	3L_10728342_INS [dm3] 3L_10735242_INS [dm6]	T	TTAT	4.077e^-8	0.004	INTERGENIC
3R	18622497	3R_18622497_SNP [dm3] 3R_22796775_SNP [dm6]	A	G	4.190e^-8	0.004	INTERGENIC
3R	17321624	3R_17321624_SNP [dm3] 3R_21495902_SNP [dm6]	T	G	4.202e^-8	0.004	INTERGENIC
3R	24017485	3R_24017485_SNP [dm3] 3R_28191763_SNP [dm6]	A	G	4.421e^-8	0.004	INTRON CG34354
2R	19239985	2R_19239985_SNP [dm3] 2R_23352462_SNP [dm6]	G	C	5.269e^-8	0.005	DOWNSTREAM CG34210 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25980894	3R_25980894_SNP [dm3] 3R_30155172_SNP [dm6]	T	A	5.404e^-8	0.005	SYNONYMOUS_CODING CG11498	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17126971	2R_17126971_SNP [dm3] 2R_21239466_SNP [dm6]	A	T	5.576e^-8	0.005	INTRON ASPP
3L	18677939	3L_18677939_SNP [dm3] 3L_18684839_SNP [dm6]	C	T	5.651e^-8	0.005	SYNONYMOUS_CODING Cyp12c1 UPSTREAM Chmp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	5575311	3L_5575311_SNP [dm3] 3L_5582211_SNP [dm6]	C	T	5.994e^-8	0.005	INTERGENIC
3R	25552867	3R_25552867_SNP [dm3] 3R_29727145_SNP [dm6]	A	G	6.379e^-8	0.005	INTRON Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3R	25552908	3R_25552908_SNP [dm3] 3R_29727186_SNP [dm6]	T	G	6.379e^-8	0.005	INTRON Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3R	24140559	3R_24140559_SNP [dm3] 3R_28314837_SNP [dm6]	C	A	6.816e^-8	0.005	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
X	13690173	X_13690173_SNP [dm3] X_13796140_SNP [dm6]	A	G	7.417e^-8	0.005	DOWNSTREAM CG10996 INTRON inaE
2R	8580322	2R_8580322_SNP [dm3] 2R_12692817_SNP [dm6]	C	T	8.533e^-8	0.005	UPSTREAM CG8768 INTERGENIC	TF binding site BDTNP1_TFBS_Med
2R	16269923	2R_16269923_SNP [dm3] 2R_20382418_SNP [dm6]	G	T	8.611e^-8	0.005	INTERGENIC
3L	10523760	3L_10523760_SNP [dm3] 3L_10530660_SNP [dm6]	G	A	9.479e^-8	0.006	INTRON A2bp1
3R	24145254	3R_24145254_SNP [dm3] 3R_28319532_SNP [dm6]	G	C	1.113e^-7	0.006	UTR_3_PRIME larp
3R	22310669	3R_22310669_SNP [dm3] 3R_26484947_SNP [dm6]	A	T	1.253e^-7	0.007	INTRON plum
2R	18763254	2R_18763254_SNP [dm3] 2R_22875731_SNP [dm6]	T	A	1.363e^-7	0.007	UPSTREAM CR45469 INTRON PIP5K59B	TF binding site mE1_TFBS_HSA
3R	24602274	3R_24602274_SNP [dm3] 3R_28776552_SNP [dm6]	G	A	1.461e^-7	0.008	UPSTREAM CR44952 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25552894	3R_25552894_SNP [dm3] 3R_29727172_SNP [dm6]	A	T	1.477e^-7	0.008	INTRON Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	3384937	2L_3384937_SNP [dm3] 2L_3384937_SNP [dm6]	A	G	1.502e^-7	0.008	INTERGENIC
3R	16108571	3R_16108571_SNP [dm3] 3R_20282849_SNP [dm6]	A	C	1.549e^-7	0.008	INTRON cic	TF binding site mE1_TFBS_inv
3L	7656919	3L_7656919_SNP [dm3] 3L_7663819_SNP [dm6]	G	A	1.840e^-7	0.009	UTR_3_PRIME CG44195 & 1 other INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	2731936	X_2731936_INS [dm3] X_2837903_INS [dm6]	T	TCCAGCT	1.912e^-7	0.009	INTRON kirre
3R	26571950	3R_26571950_SNP [dm3] 3R_30746228_SNP [dm6]	G	A	2.074e^-7	0.009	SYNONYMOUS_CODING Npc2h UPSTREAM Npc2g DOWNSTREAM CR43238	TF binding site mE1_TFBS_cad
3L	1853599	3L_1853599_SNP [dm3] 3L_1853599_SNP [dm6]	C	T	2.149e^-7	0.009	INTRON CG13936
3R	25556602	3R_25556602_SNP [dm3] 3R_29730880_SNP [dm6]	G	A	2.192e^-7	0.009	INTRON Kul	TF binding site mE1_TFBS_cad
3L	18678388	3L_18678388_SNP [dm3] 3L_18685288_SNP [dm6]	T	C	2.377e^-7	0.01	NON_SYNONYMOUS_CODING Cyp12c1	TF binding site mE1_TFBS_sens
2L	6308319	2L_6308319_SNP [dm3] 2L_6308319_SNP [dm6]	T	C	2.592e^-7	0.01	UPSTREAM CG13984 DOWNSTREAM CG43922 INTRON Ddr
3R	16336617	3R_16336617_DEL [dm3] 3R_20510895_DEL [dm6]	TGATGGGAACAAACAAT...	T	2.606e^-7	0.01	UPSTREAM CG4288 INTRON CG4288
2L	10400615	2L_10400615_SNP [dm3] 2L_10400615_SNP [dm6]	A	T	2.635e^-7	0.01	SYNONYMOUS_CODING Cnot4
3R	14209153	3R_14209153_SNP [dm3] 3R_18383431_SNP [dm6]	A	G	2.835e^-7	0.011	SYNONYMOUS_CODING CG14309	TF binding site mE1_TFBS_cad
X	16609516	X_16609516_SNP [dm3] X_16715483_SNP [dm6]	A	G	3.240e^-7	0.012	INTRON CG34325
X	16609522	X_16609522_INS [dm3] X_16715489_INS [dm6]	A	TCGGGC	3.240e^-7	0.012	INTRON CG34325
X	18363135	X_18363135_INS [dm3] X_18469102_INS [dm6]	G	GGG	3.280e^-7	0.012	INTRON CG32547
X	3426860	X_3426860_SNP [dm3] X_3532827_SNP [dm6]	T	G	3.485e^-7	0.012	INTRON CG32791
3R	12081776	3R_12081776_DEL [dm3] 3R_16256054_DEL [dm6]	AA	A	3.735e^-7	0.012	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17333882	X_17333882_SNP [dm3] X_17439849_SNP [dm6]	G	T	3.804e^-7	0.012	INTRON CG12994
3L	18685154	3L_18685154_SNP [dm3] 3L_18692054_SNP [dm6]	A	T	3.903e^-7	0.012	INTERGENIC
3L	12346104	3L_12346104_SNP [dm3] 3L_12353004_SNP [dm6]	G	A	4.003e^-7	0.012	INTERGENIC
3R	2532268	3R_2532268_SNP [dm3] 3R_6706546_SNP [dm6]	C	T	4.017e^-7	0.012	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	11968057	2R_11968057_SNP [dm3] 2R_16080552_SNP [dm6]	A	C	4.019e^-7	0.012	DOWNSTREAM Dg INTERGENIC
3R	3891927	3R_3891927_SNP [dm3] 3R_8066205_SNP [dm6]	A	G	4.163e^-7	0.012	INTRON mAChR-B
3L	10524331	3L_10524331_SNP [dm3] 3L_10531231_SNP [dm6]	C	A	4.245e^-7	0.012	INTRON A2bp1
2L	3111045	2L_3111045_SNP [dm3] 2L_3111045_SNP [dm6]	T	C	4.322e^-7	0.012	DOWNSTREAM PpD6 INTRON toc
X	1684130	X_1684130_SNP [dm3] X_1790097_SNP [dm6]	T	C	4.329e^-7	0.012	NON_SYNONYMOUS_CODING CG32806 INTRON CG42666
X	1685596	X_1685596_SNP [dm3] X_1791563_SNP [dm6]	G	A	4.329e^-7	0.012	INTRON CG42666
X	1687463	X_1687463_SNP [dm3] X_1793430_SNP [dm6]	G	T	4.329e^-7	0.012	INTRON CG42666
3L	2397470	3L_2397470_SNP [dm3] 3L_2397470_SNP [dm6]	T	A	4.358e^-7	0.012	INTRON CG45186	TF binding site mE1_TFBS_inv
3R	9513254	3R_9513254_SNP [dm3] 3R_13687532_SNP [dm6]	G	A	4.539e^-7	0.013	UPSTREAM omd INTRON flfl
2R	19775497	2R_19775497_SNP [dm3] 2R_23887974_SNP [dm6]	G	T	4.562e^-7	0.013	SYNONYMOUS_CODING CG5597 DOWNSTREAM Dcp1	TF binding site mE1_TFBS_cad
3R	9507666	3R_9507666_SNP [dm3] 3R_13681944_SNP [dm6]	A	G	4.740e^-7	0.013	SYNONYMOUS_CODING omd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	3426164	X_3426164_SNP [dm3] X_3532131_SNP [dm6]	G	A	4.740e^-7	0.013	INTRON CG32791
X	19359439	X_19359439_SNP [dm3] X_19465406_SNP [dm6]	G	T	4.986e^-7	0.013	NON_SYNONYMOUS_CODING kek5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17452501	2R_17452501_SNP [dm3] 2R_21564996_SNP [dm6]	G	A	5.000e^-7	0.013	INTRON CG10440
2R	17452521	2R_17452521_SNP [dm3] 2R_21565016_SNP [dm6]	A	T	5.000e^-7	0.013	INTRON CG10440
2R	17452547	2R_17452547_INS [dm3] 2R_21565042_INS [dm6]	A	ACA	5.000e^-7	0.013	INTRON CG10440
3L	12841104	3L_12841104_SNP [dm3] 3L_12848004_SNP [dm6]	C	T	5.281e^-7	0.013	INTRON CG10948
X	4656426	X_4656426_SNP [dm3] X_4762393_SNP [dm6]	A	T	5.314e^-7	0.013	INTERGENIC
3R	13803487	3R_13803487_SNP [dm3] 3R_17977765_SNP [dm6]	G	A	5.332e^-7	0.013	INTRON cpo
3R	12333753	3R_12333753_SNP [dm3] 3R_16508031_SNP [dm6]	C	G	5.338e^-7	0.013	INTRON CG42342	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	22976301	3R_22976301_DEL [dm3] 3R_27150579_DEL [dm6]	CTCAC	C	5.756e^-7	0.014	UTR_5_PRIME CG6051	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7974736	3L_7974736_SNP [dm3] 3L_7981636_SNP [dm6]	G	C	5.902e^-7	0.014	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3R	9460257	3R_9460257_SNP [dm3] 3R_13634535_SNP [dm6]	C	G	6.213e^-7	0.014	NON_SYNONYMOUS_CODING CG10841 DOWNSTREAM sqd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9465250	3R_9465250_SNP [dm3] 3R_13639528_SNP [dm6]	G	A	6.213e^-7	0.014	UTR_3_PRIME sqd INTRON sqd
3R	17320864	3R_17320864_SNP [dm3] 3R_21495142_SNP [dm6]	G	T	6.274e^-7	0.014	INTERGENIC	TF binding site mE1_TFBS_cad
2R	12699685	2R_12699685_SNP [dm3] 2R_16812180_SNP [dm6]	G	A	6.367e^-7	0.014	UPSTREAM CR44379 INTERGENIC
3L	10524222	3L_10524222_SNP [dm3] 3L_10531122_SNP [dm6]	T	C	6.880e^-7	0.015	INTRON A2bp1
2R	8579291	2R_8579291_SNP [dm3] 2R_12691786_SNP [dm6]	T	A	7.056e^-7	0.015	SPLICE_SITE_REGION CG8768 UPSTREAM Obp49a INTRON CG8768	TF binding site mE1_TFBS_sens
2R	8579354	2R_8579354_SNP [dm3] 2R_12691849_SNP [dm6]	C	A	7.056e^-7	0.015	SYNONYMOUS_CODING CG8768 UPSTREAM Obp49a	TF binding site mE1_TFBS_sens
2R	8579489	2R_8579489_SNP [dm3] 2R_12691984_SNP [dm6]	C	A	7.056e^-7	0.015	SYNONYMOUS_CODING CG8768	TF binding site mE1_TFBS_sens
2R	8580365	2R_8580365_SNP [dm3] 2R_12692860_SNP [dm6]	G	A	7.056e^-7	0.015	UPSTREAM CG8768 INTERGENIC	TF binding site BDTNP1_TFBS_Med
2R	8581690	2R_8581690_SNP [dm3] 2R_12694185_SNP [dm6]	T	A	7.056e^-7	0.015	INTERGENIC
2R	17452558	2R_17452558_SNP [dm3] 2R_21565053_SNP [dm6]	A	C	7.355e^-7	0.015	INTRON CG10440
3L	2712407	3L_2712407_SNP [dm3] 3L_2712407_SNP [dm6]	C	A	7.458e^-7	0.015	UPSTREAM Fife INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14955197	2R_14955197_SNP [dm3] 2R_19067692_SNP [dm6]	T	C	7.891e^-7	0.016	INTRON 5-HT1A
3L	13461704	3L_13461704_SNP [dm3] 3L_13468604_SNP [dm6]	C	A	8.077e^-7	0.016	SYNONYMOUS_CODING CG10089
2R	11968117	2R_11968117_SNP [dm3] 2R_16080612_SNP [dm6]	G	A	8.307e^-7	0.016	DOWNSTREAM Dg INTERGENIC
3L	12877835	3L_12877835_SNP [dm3] 3L_12884735_SNP [dm6]	A	G	8.565e^-7	0.017	UPSTREAM CG14120 INTERGENIC	TF binding site mE1_TFBS_inv
3L	18668083	3L_18668083_SNP [dm3] 3L_18674983_SNP [dm6]	T	G	8.868e^-7	0.017	SPLICE_SITE_REGION GNBP2 UPSTREAM GNBP1 INTRON GNBP2	TF binding site mE1_TFBS_cad
X	3427167	X_3427167_SNP [dm3] X_3533134_SNP [dm6]	T	A	9.055e^-7	0.017	INTRON CG32791
3R	9440527	3R_9440527_SNP [dm3] 3R_13614805_SNP [dm6]	C	T	9.268e^-7	0.018	INTERGENIC
3L	11465323	3L_11465323_SNP [dm3] 3L_11472223_SNP [dm6]	G	T	9.505e^-7	0.018	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
3R	13296070	3R_13296070_SNP [dm3] 3R_17470348_SNP [dm6]	T	C	9.877e^-7	0.018	INTERGENIC
3L	16659871	3L_16659871_SNP [dm3] 3L_16666771_SNP [dm6]	T	C	1.013e^-6	0.019	INTRON Galphaf	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11968131	2R_11968131_SNP [dm3] 2R_16080626_SNP [dm6]	A	T	1.016e^-6	0.019	DOWNSTREAM Dg INTERGENIC
2R	11968130	2R_11968130_SNP [dm3] 2R_16080625_SNP [dm6]	T	A	1.044e^-6	0.019	DOWNSTREAM Dg INTERGENIC
3R	26138938	3R_26138938_SNP [dm3] 3R_30313216_SNP [dm6]	C	T	1.045e^-6	0.019	INTRON hdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25556595	3R_25556595_SNP [dm3] 3R_29730873_SNP [dm6]	A	C	1.059e^-6	0.019	INTRON Kul	TF binding site mE1_TFBS_cad
3L	13188204	3L_13188204_SNP [dm3] 3L_13195104_SNP [dm6]	C	G	1.074e^-6	0.019	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25980903	3R_25980903_SNP [dm3] 3R_30155181_SNP [dm6]	G	C	1.133e^-6	0.02	SYNONYMOUS_CODING CG11498	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25555984	3R_25555984_SNP [dm3] 3R_29730262_SNP [dm6]	A	G	1.165e^-6	0.02	SYNONYMOUS_CODING Kul	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	4656434	X_4656434_SNP [dm3] X_4762401_SNP [dm6]	A	T	1.198e^-6	0.02	INTERGENIC
3L	9432178	3L_9432178_SNP [dm3] 3L_9439078_SNP [dm6]	G	A	1.258e^-6	0.021	UTR_3_PRIME MTF-1 DOWNSTREAM MTF-1 & 1 other INTRON Bet3
3R	13447421	3R_13447421_SNP [dm3] 3R_17621699_SNP [dm6]	C	G	1.266e^-6	0.021	NON_SYNONYMOUS_CODING CG14323 UPSTREAM tRNA:CR33534
3R	13447422	3R_13447422_SNP [dm3] 3R_17621700_SNP [dm6]	A	G	1.266e^-6	0.021	NON_SYNONYMOUS_CODING CG14323 UPSTREAM tRNA:CR33534
3L	11465468	3L_11465468_SNP [dm3] 3L_11472368_SNP [dm6]	A	T	1.280e^-6	0.021	UPSTREAM Vha16-3 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3R	26042927	3R_26042927_SNP [dm3] 3R_30217205_SNP [dm6]	G	A	1.286e^-6	0.021	DOWNSTREAM CecC INTERGENIC
X	16940893	X_16940893_SNP [dm3] X_17046860_SNP [dm6]	T	A	1.301e^-6	0.021	INTRON CG45002
3R	9517283	3R_9517283_SNP [dm3] 3R_13691561_SNP [dm6]	A	T	1.372e^-6	0.022	INTRON flfl
3R	14784435	3R_14784435_SNP [dm3] 3R_18958713_SNP [dm6]	A	G	1.392e^-6	0.022	UTR_5_PRIME CG42613 UTR_3_PRIME CG43732 INTRON CG42613
3R	9764145	3R_9764145_SNP [dm3] 3R_13938423_SNP [dm6]	T	C	1.406e^-6	0.022	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	11465298	3L_11465298_SNP [dm3] 3L_11472198_SNP [dm6]	T	A	1.412e^-6	0.022	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
3R	26453681	3R_26453681_SNP [dm3] 3R_30627959_SNP [dm6]	C	T	1.421e^-6	0.022	SYNONYMOUS_CODING CG2267
3L	8542576	3L_8542576_SNP [dm3] 3L_8549476_SNP [dm6]	C	T	1.459e^-6	0.022	INTRON rhea	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13446022	3R_13446022_SNP [dm3] 3R_17620300_SNP [dm6]	G	T	1.535e^-6	0.023	UPSTREAM tRNA:A:90C DOWNSTREAM CG14326 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	10902380	3R_10902380_DEL [dm3] 3R_15076658_DEL [dm6]	ACAA	A	1.607e^-6	0.024	INTRON dpr9
3R	10902406	3R_10902406_SNP [dm3] 3R_15076684_SNP [dm6]	C	T	1.607e^-6	0.024	INTRON dpr9
3L	8409074	3L_8409074_SNP [dm3] 3L_8415974_SNP [dm6]	T	A	1.657e^-6	0.025	UTR_3_PRIME CG32354 DOWNSTREAM Exo70
3R	18915770	3R_18915770_SNP [dm3] 3R_23090048_SNP [dm6]	A	T	1.680e^-6	0.025	INTRON CG13830
3L	18686706	3L_18686706_SNP [dm3] 3L_18693606_SNP [dm6]	C	T	1.747e^-6	0.026	UPSTREAM CG6893 EXON CR43987
2L	13670794	2L_13670794_SNP [dm3] 2L_13670794_SNP [dm6]	T	C	1.760e^-6	0.026	UTR_3_PRIME CG18507 DOWNSTREAM CG18507 INTRON CG18507
3R	5224050	3R_5224050_SNP [dm3] 3R_9398328_SNP [dm6]	C	G	1.778e^-6	0.026	NON_SYNONYMOUS_CODING Or85f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	3111048	2L_3111048_SNP [dm3] 2L_3111048_SNP [dm6]	A	C	1.815e^-6	0.026	DOWNSTREAM PpD6 INTRON toc
3R	26559217	3R_26559217_SNP [dm3] 3R_30733495_SNP [dm6]	A	G	1.829e^-6	0.026	INTERGENIC
3R	14162501	3R_14162501_SNP [dm3] 3R_18336779_SNP [dm6]	G	T	1.939e^-6	0.027	INTRON CG15803
2L	6021544	2L_6021544_SNP [dm3] 2L_6021544_SNP [dm6]	C	A	1.954e^-6	0.027	SYNONYMOUS_CODING CG13996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4448073	3L_4448073_SNP [dm3] 3L_4448073_SNP [dm6]	G	T	1.982e^-6	0.028	DOWNSTREAM CG12607 INTERGENIC
3R	24156543	3R_24156543_SNP [dm3] 3R_28330821_SNP [dm6]	C	A	2.080e^-6	0.029	UTR_5_PRIME larp INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	19803611	3R_19803611_SNP [dm3] 3R_23977889_SNP [dm6]	T	C	2.155e^-6	0.029	INTRON CG31140
3L	10394230	3L_10394230_INS [dm3] 3L_10401130_INS [dm6]	T	TT	2.209e^-6	0.03	INTERGENIC
3R	4380778	3R_4380778_SNP [dm3] 3R_8555056_SNP [dm6]	T	A	2.242e^-6	0.03	INTERGENIC
3R	4380779	3R_4380779_SNP [dm3] 3R_8555057_SNP [dm6]	T	A	2.242e^-6	0.03	INTERGENIC
3R	17259468	3R_17259468_SNP [dm3] 3R_21433746_SNP [dm6]	C	T	2.260e^-6	0.03	SYNONYMOUS_CODING lbl	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24140242	3R_24140242_SNP [dm3] 3R_28314520_SNP [dm6]	A	G	2.268e^-6	0.03	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	5975701	3R_5975701_SNP [dm3] 3R_10149979_SNP [dm6]	T	C	2.403e^-6	0.031	INTRON Invadolysin
3L	5607775	3L_5607775_SNP [dm3] 3L_5614675_SNP [dm6]	A	T	2.408e^-6	0.031	INTERGENIC
3R	19540565	3R_19540565_SNP [dm3] 3R_23714843_SNP [dm6]	G	A	2.524e^-6	0.032	INTRON nau
3R	27167001	3R_27167001_SNP [dm3] 3R_31341279_SNP [dm6]	C	T	2.527e^-6	0.032	INTRON CG34347
2L	3132259	2L_3132259_SNP [dm3] 2L_3132259_SNP [dm6]	T	G	2.564e^-6	0.033	INTRON toc
3L	12877840	3L_12877840_SNP [dm3] 3L_12884740_SNP [dm6]	T	C	2.605e^-6	0.033	UPSTREAM CG14120 INTERGENIC	TF binding site mE1_TFBS_inv
X	14906384	X_14906384_SNP [dm3] X_15012351_SNP [dm6]	G	A	2.664e^-6	0.033	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
3L	13461716	3L_13461716_SNP [dm3] 3L_13468616_SNP [dm6]	C	T	2.714e^-6	0.033	SYNONYMOUS_CODING CG10089
2R	16540541	2R_16540541_SNP [dm3] 2R_20653036_SNP [dm6]	C	T	2.718e^-6	0.033	UTR_3_PRIME CG16799 DOWNSTREAM CG16799 INTRON Lrt	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3R	17259498	3R_17259498_SNP [dm3] 3R_21433776_SNP [dm6]	C	G	2.745e^-6	0.033	SYNONYMOUS_CODING lbl	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17235270	3R_17235270_SNP [dm3] 3R_21409548_SNP [dm6]	G	A	2.749e^-6	0.033	SYNONYMOUS_CODING CheB93b DOWNSTREAM lbl
3R	18854222	3R_18854222_SNP [dm3] 3R_23028500_SNP [dm6]	C	T	2.752e^-6	0.033	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12382316	2R_12382316_SNP [dm3] 2R_16494811_SNP [dm6]	C	T	2.763e^-6	0.033	INTERGENIC
X	17807982	X_17807982_SNP [dm3] X_17913949_SNP [dm6]	C	T	2.838e^-6	0.034	INTRON CG6847
X	17808001	X_17808001_SNP [dm3] X_17913968_SNP [dm6]	C	G	2.838e^-6	0.034	INTRON CG6847
3R	25110299	3R_25110299_SNP [dm3] 3R_29284577_SNP [dm6]	A	G	2.846e^-6	0.034	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3L	10523025	3L_10523025_SNP [dm3] 3L_10529925_SNP [dm6]	A	G	2.878e^-6	0.034	INTRON A2bp1
3L	14159657	3L_14159657_SNP [dm3] 3L_14166557_SNP [dm6]	C	T	2.946e^-6	0.034	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15141023	3R_15141023_SNP [dm3] 3R_19315301_SNP [dm6]	A	T	2.999e^-6	0.035	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	1690645	X_1690645_SNP [dm3] X_1796612_SNP [dm6]	A	C	3.021e^-6	0.035	INTRON CG42666
X	20289704	X_20289704_SNP [dm3] X_20418677_SNP [dm6]	G	T	3.028e^-6	0.035	NON_SYNONYMOUS_CODING Obp19c UPSTREAM Obp19d DOWNSTREAM Obp19b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24152082	3R_24152082_SNP [dm3] 3R_28326360_SNP [dm6]	C	T	3.029e^-6	0.035	UPSTREAM larp INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3132248	2L_3132248_SNP [dm3] 2L_3132248_SNP [dm6]	A	G	3.189e^-6	0.036	INTRON toc
2L	3008288	2L_3008288_SNP [dm3] 2L_3008288_SNP [dm6]	G	A	3.192e^-6	0.036	INTRON CG17265
3R	17881528	3R_17881528_SNP [dm3] 3R_22055806_SNP [dm6]	C	T	3.225e^-6	0.036	INTRON how
3R	18895579	3R_18895579_SNP [dm3] 3R_23069857_SNP [dm6]	C	G	3.290e^-6	0.037	DOWNSTREAM CG13830 INTERGENIC
3R	17259624	3R_17259624_SNP [dm3] 3R_21433902_SNP [dm6]	A	G	3.310e^-6	0.037	SYNONYMOUS_CODING lbl	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14629671	3L_14629671_SNP [dm3] 3L_14636571_SNP [dm6]	A	G	3.379e^-6	0.037	INTRON dlp	TF binding site BDTNP1_TFBS_dl
3R	13971706	3R_13971706_SNP [dm3] 3R_18145984_SNP [dm6]	A	T	3.408e^-6	0.037	INTERGENIC
3R	22727511	3R_22727511_SNP [dm3] 3R_26901789_SNP [dm6]	T	C	3.471e^-6	0.038	INTRON T48	regulatory region REDfly_CRMs
3R	14150494	3R_14150494_SNP [dm3] 3R_18324772_SNP [dm6]	C	A	3.492e^-6	0.038	INTRON CG31235
3R	25110300	3R_25110300_SNP [dm3] 3R_29284578_SNP [dm6]	A	G	3.493e^-6	0.038	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2R	17586565	2R_17586565_SNP [dm3] 2R_21699060_SNP [dm6]	G	C	3.543e^-6	0.038	INTRON HmgZ
3R	24145769	3R_24145769_SNP [dm3] 3R_28320047_SNP [dm6]	T	A	3.628e^-6	0.039	UTR_3_PRIME larp
3R	21988292	3R_21988292_SNP [dm3] 3R_26162570_SNP [dm6]	C	T	3.685e^-6	0.039	INTERGENIC
3R	4391033	3R_4391033_SNP [dm3] 3R_8565311_SNP [dm6]	G	A	3.727e^-6	0.039	SYNONYMOUS_CODING Cenp-C	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	6911600	3L_6911600_SNP [dm3] 3L_6918500_SNP [dm6]	A	T	3.756e^-6	0.039	INTERGENIC
3R	15141028	3R_15141028_SNP [dm3] 3R_19315306_SNP [dm6]	A	C	3.798e^-6	0.039	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	8472625	X_8472625_SNP [dm3] X_8578592_SNP [dm6]	A	C	3.860e^-6	0.04	INTRON CG12065
3L	6366567	3L_6366567_SNP [dm3] 3L_6373467_SNP [dm6]	A	G	3.876e^-6	0.04	INTERGENIC
2L	9205736	2L_9205736_DEL [dm3] 2L_9205736_DEL [dm6]	TACAT	A	3.937e^-6	0.04	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8579363	2R_8579363_SNP [dm3] 2R_12691858_SNP [dm6]	C	T	3.971e^-6	0.04	SYNONYMOUS_CODING CG8768 UPSTREAM Obp49a	TF binding site mE1_TFBS_sens
2R	8580343	2R_8580343_SNP [dm3] 2R_12692838_SNP [dm6]	C	G	3.971e^-6	0.04	UPSTREAM CG8768 INTERGENIC	TF binding site BDTNP1_TFBS_Med
X	16940899	X_16940899_SNP [dm3] X_17046866_SNP [dm6]	G	A	3.974e^-6	0.04	INTRON CG45002
3L	16693124	3L_16693124_SNP [dm3] 3L_16700024_SNP [dm6]	C	G	3.976e^-6	0.04	INTRON Lasp & 1 other
3L	16188562	3L_16188562_DEL [dm3] 3L_16195462_DEL [dm6]	TAAGG	A	3.976e^-6	0.04	INTERGENIC
3R	16716238	3R_16716238_SNP [dm3] 3R_20890516_SNP [dm6]	A	G	4.064e^-6	0.04	UPSTREAM tRNA:CR31480 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12947033	3R_12947033_SNP [dm3] 3R_17121311_SNP [dm6]	C	A	4.097e^-6	0.04	UPSTREAM CG42779 DOWNSTREAM CG34278 INTRON cher
3R	17064679	3R_17064679_SNP [dm3] 3R_21238957_SNP [dm6]	A	C	4.106e^-6	0.04	INTERGENIC	regulatory region REDfly_CRMs
X	17335722	X_17335722_SNP [dm3] X_17441689_SNP [dm6]	T	G	4.143e^-6	0.04	INTRON CG12994
3R	24154705	3R_24154705_SNP [dm3] 3R_28328983_SNP [dm6]	A	T	4.153e^-6	0.04	UPSTREAM larp INTRON larp	TF binding site mE1_TFBS_GATAe
3R	24154708	3R_24154708_SNP [dm3] 3R_28328986_SNP [dm6]	A	G	4.153e^-6	0.04	UPSTREAM larp INTRON larp	TF binding site mE1_TFBS_GATAe
2L	8340642	2L_8340642_SNP [dm3] 2L_8340642_SNP [dm6]	C	T	4.164e^-6	0.04	INTRON CG14274
2L	14353951	2L_14353951_SNP [dm3] 2L_14353951_SNP [dm6]	G	A	4.195e^-6	0.04	SYNONYMOUS_CODING l_2_34Fd	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	24145235	3R_24145235_SNP [dm3] 3R_28319513_SNP [dm6]	G	T	4.237e^-6	0.04	UTR_3_PRIME larp
3L	10728877	3L_10728877_SNP [dm3] 3L_10735777_SNP [dm6]	T	A	4.270e^-6	0.04	INTERGENIC
3L	7616317	3L_7616317_SNP [dm3] 3L_7623217_SNP [dm6]	A	C	4.325e^-6	0.041	INTRON CG33275	TF binding site BDTNP1_TFBS_dl
3R	496472	3R_496472_SNP [dm3] 3R_4670750_SNP [dm6]	C	A	4.381e^-6	0.041	INTRON CG43427
3R	25556466	3R_25556466_SNP [dm3] 3R_29730744_SNP [dm6]	T	G	4.456e^-6	0.041	INTRON Kul	TF binding site mE1_TFBS_cad
2R	12106599	2R_12106599_SNP [dm3] 2R_16219094_SNP [dm6]	T	C	4.517e^-6	0.042	UPSTREAM tRNA:CR30239 & 1 other DOWNSTREAM tRNA:CR30238 INTRON mrj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1788207	3L_1788207_SNP [dm3] 3L_1788207_SNP [dm6]	G	T	4.533e^-6	0.042	SYNONYMOUS_CODING alpha-Spec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	1797360	3L_1797360_SNP [dm3] 3L_1797360_SNP [dm6]	A	G	4.533e^-6	0.042	UTR_5_PRIME CG12020 DOWNSTREAM Cdc37	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	5938000	3L_5938000_SNP [dm3] 3L_5944900_SNP [dm6]	A	G	4.607e^-6	0.042	INTRON CG33993
3L	5938009	3L_5938009_SNP [dm3] 3L_5944909_SNP [dm6]	C	T	4.607e^-6	0.042	INTRON CG33993
3L	3529547	3L_3529547_SNP [dm3] 3L_3529547_SNP [dm6]	T	C	4.613e^-6	0.042	INTRON Eip63E
X	16940904	X_16940904_SNP [dm3] X_17046871_SNP [dm6]	G	T	4.759e^-6	0.043	INTRON CG45002
X	14283524	X_14283524_SNP [dm3] X_14389491_SNP [dm6]	C	T	4.806e^-6	0.043	INTRON dpr8
3R	20472769	3R_20472769_SNP [dm3] 3R_24647047_SNP [dm6]	C	T	4.883e^-6	0.043	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25556597	3R_25556597_SNP [dm3] 3R_29730875_SNP [dm6]	G	C	4.928e^-6	0.044	INTRON Kul	TF binding site mE1_TFBS_cad
3R	18560301	3R_18560301_SNP [dm3] 3R_22734579_SNP [dm6]	A	T	4.949e^-6	0.044	SPLICE_SITE_REGION Dcr-1 UPSTREAM Takl2 INTRON Dcr-1	TF binding site mE1_TFBS_cad
3L	9289014	3L_9289014_SNP [dm3] 3L_9295914_SNP [dm6]	C	G	4.984e^-6	0.044	INTERGENIC
3L	16718796	3L_16718796_SNP [dm3] 3L_16725696_SNP [dm6]	T	C	4.994e^-6	0.044	UTR_3_PRIME CG13026 UPSTREAM PGRP-SB2 DOWNSTREAM CG13031
3R	24154699	3R_24154699_SNP [dm3] 3R_28328977_SNP [dm6]	G	T	5.017e^-6	0.044	UPSTREAM larp INTRON larp	TF binding site mE1_TFBS_GATAe
2L	3007369	2L_3007369_SNP [dm3] 2L_3007369_SNP [dm6]	G	A	5.128e^-6	0.044	INTRON CG17265	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3007490	2L_3007490_SNP [dm3] 2L_3007490_SNP [dm6]	T	A	5.128e^-6	0.044	INTRON CG17265	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3008350	2L_3008350_SNP [dm3] 2L_3008350_SNP [dm6]	A	G	5.128e^-6	0.044	INTRON CG17265
3R	21064992	3R_21064992_SNP [dm3] 3R_25239270_SNP [dm6]	A	T	5.166e^-6	0.044	UPSTREAM to DOWNSTREAM CG11852 INTERGENIC
X	17808225	X_17808225_SNP [dm3] X_17914192_SNP [dm6]	A	C	5.185e^-6	0.044	INTRON CG6847
3R	16716264	3R_16716264_SNP [dm3] 3R_20890542_SNP [dm6]	A	G	5.197e^-6	0.044	UPSTREAM tRNA:CR31480 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3640584	2L_3640584_SNP [dm3] 2L_3640584_SNP [dm6]	T	A	5.243e^-6	0.044	INTRON for	TF binding site mE1_TFBS_cad
3R	17232733	3R_17232733_SNP [dm3] 3R_21407011_SNP [dm6]	G	A	5.377e^-6	0.045	UPSTREAM CheB93a DOWNSTREAM CG7907 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1
3R	18594965	3R_18594965_SNP [dm3] 3R_22769243_SNP [dm6]	A	G	5.381e^-6	0.045	SYNONYMOUS_CODING CG43092 UPSTREAM CG43091 DOWNSTREAM CG43093 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17146169	3L_17146169_SNP [dm3] 3L_17153069_SNP [dm6]	C	T	5.455e^-6	0.045	INTRON Rbp6
2L	3789258	2L_3789258_SNP [dm3] 2L_3789258_SNP [dm6]	T	C	5.471e^-6	0.045	UPSTREAM CG3921 INTRON CG3921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11070698	2R_11070698_SNP [dm3] 2R_15183193_SNP [dm6]	T	C	5.509e^-6	0.045	INTRON igl
3R	19293304	3R_19293304_SNP [dm3] 3R_23467582_SNP [dm6]	G	A	5.699e^-6	0.047	INTRON CG4374
2R	13104521	2R_13104521_SNP [dm3] 2R_17217016_SNP [dm6]	G	T	5.779e^-6	0.047	UTR_5_PRIME mbl
3R	12875597	3R_12875597_SNP [dm3] 3R_17049875_SNP [dm6]	T	G	5.786e^-6	0.047	INTERGENIC
3R	13445270	3R_13445270_SNP [dm3] 3R_17619548_SNP [dm6]	A	T	5.841e^-6	0.047	SYNONYMOUS_CODING CG14326 UPSTREAM tRNA:CR31570 & 2 others DOWNSTREAM tRNA:A:90C	TF binding site mE1_TFBS_inv
3R	19500901	3R_19500901_SNP [dm3] 3R_23675179_SNP [dm6]	G	A	5.924e^-6	0.047	INTERGENIC
X	11118597	X_11118597_SNP [dm3] X_11224564_SNP [dm6]	G	A	5.928e^-6	0.047	SYNONYMOUS_CODING CG44422 UTR_3_PRIME CG44422 INTRON CG44422	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16623004	3R_16623004_SNP [dm3] 3R_20797282_SNP [dm6]	G	T	5.983e^-6	0.047	SPLICE_SITE_REGION Syp INTRON Syp
3R	16623007	3R_16623007_SNP [dm3] 3R_20797285_SNP [dm6]	C	A	5.983e^-6	0.047	SPLICE_SITE_REGION Syp INTRON Syp
3R	16623014	3R_16623014_SNP [dm3] 3R_20797292_SNP [dm6]	G	T	5.983e^-6	0.047	INTRON Syp
3R	16623016	3R_16623016_SNP [dm3] 3R_20797294_SNP [dm6]	A	G	5.983e^-6	0.047	INTRON Syp
3R	16623017	3R_16623017_SNP [dm3] 3R_20797295_SNP [dm6]	A	T	5.983e^-6	0.047	INTRON Syp
3R	27089497	3R_27089497_SNP [dm3] 3R_31263775_SNP [dm6]	G	A	6.006e^-6	0.047	SYNONYMOUS_CODING CG18673
3R	9960955	3R_9960955_SNP [dm3] 3R_14135233_SNP [dm6]	A	G	6.118e^-6	0.048	INTERGENIC
X	14906374	X_14906374_SNP [dm3] X_15012341_SNP [dm6]	G	A	6.238e^-6	0.048	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
3R	19292978	3R_19292978_SNP [dm3] 3R_23467256_SNP [dm6]	C	T	6.271e^-6	0.048	INTRON CG4374
2R	8579411	2R_8579411_SNP [dm3] 2R_12691906_SNP [dm6]	T	C	6.372e^-6	0.049	SYNONYMOUS_CODING CG8768 UPSTREAM Obp49a	TF binding site mE1_TFBS_sens
3R	4099793	3R_4099793_SNP [dm3] 3R_8274071_SNP [dm6]	C	T	6.375e^-6	0.049	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
3R	17232720	3R_17232720_SNP [dm3] 3R_21406998_SNP [dm6]	A	T	6.410e^-6	0.049	UPSTREAM CheB93a DOWNSTREAM CG7907 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1
2L	10122068	2L_10122068_SNP [dm3] 2L_10122068_SNP [dm6]	C	T	6.416e^-6	0.049	DOWNSTREAM CG13135 INTRON CG44153 & 1 other
3R	26453660	3R_26453660_SNP [dm3] 3R_30627938_SNP [dm6]	C	T	6.474e^-6	0.049	SYNONYMOUS_CODING CG2267
3R	18895636	3R_18895636_SNP [dm3] 3R_23069914_SNP [dm6]	T	C	6.496e^-6	0.049	DOWNSTREAM CG13830 INTERGENIC
3L	6374059	3L_6374059_SNP [dm3] 3L_6380959_SNP [dm6]	C	A	6.501e^-6	0.049	INTERGENIC
3L	14757631	3L_14757631_SNP [dm3] 3L_14764531_SNP [dm6]	C	T	6.531e^-6	0.049	SYNONYMOUS_CODING CG9384	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	17808005	X_17808005_DEL [dm3] X_17913972_DEL [dm6]	CGTGCCTTAGACAC...	C	6.648e^-6	0.049	INTRON CG6847
3R	24154691	3R_24154691_SNP [dm3] 3R_28328969_SNP [dm6]	A	T	6.700e^-6	0.05	UPSTREAM larp INTRON larp	TF binding site mE1_TFBS_GATAe
3R	16227333	3R_16227333_SNP [dm3] 3R_20401611_SNP [dm6]	C	T	6.705e^-6	0.05	INTRON Gfrl
2R	17894173	2R_17894173_DEL [dm3] 2R_22006668_DEL [dm6]	AGA	A	6.800e^-6	0.05	INTRON CG34370
3L	9342999	3L_9342999_SNP [dm3] 3L_9349899_SNP [dm6]	T	A	6.840e^-6	0.05	NON_SYNONYMOUS_CODING PGRP-LF DOWNSTREAM UGP
2L	3434764	2L_3434764_SNP [dm3] 2L_3434764_SNP [dm6]	C	A	6.846e^-6	0.05	INTERGENIC
2L	3789250	2L_3789250_INS [dm3] 2L_3789250_INS [dm6]	A	AA	6.884e^-6	0.05	UPSTREAM CG3921 INTRON CG3921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15187763	3R_15187763_SNP [dm3] 3R_19362041_SNP [dm6]	A	C	6.991e^-6	0.051	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9764170	3R_9764170_SNP [dm3] 3R_13938448_SNP [dm6]	G	T	7.135e^-6	0.051	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	16718121	3L_16718121_SNP [dm3] 3L_16725021_SNP [dm6]	C	T	7.271e^-6	0.052	SYNONYMOUS_CODING CG13031 UTR_3_PRIME CG13026 DOWNSTREAM Dab & 1 other
2R	18763272	2R_18763272_SNP [dm3] 2R_22875749_SNP [dm6]	C	G	7.282e^-6	0.052	UPSTREAM CR45469 INTRON PIP5K59B	TF binding site mE1_TFBS_HSA
2R	18763275	2R_18763275_SNP [dm3] 2R_22875752_SNP [dm6]	G	A	7.282e^-6	0.052	UPSTREAM CR45469 INTRON PIP5K59B	TF binding site mE1_TFBS_HSA
2R	18763283	2R_18763283_SNP [dm3] 2R_22875760_SNP [dm6]	T	C	7.282e^-6	0.052	UPSTREAM CR45469 INTRON PIP5K59B	TF binding site mE1_TFBS_HSA
X	10601667	X_10601667_DEL [dm3] X_10707634_DEL [dm6]	AA	A	7.355e^-6	0.052	INTRON X11Lbeta
3L	9288928	3L_9288928_SNP [dm3] 3L_9295828_SNP [dm6]	C	T	7.525e^-6	0.052	INTERGENIC
3R	23304019	3R_23304019_SNP [dm3] 3R_27478297_SNP [dm6]	C	T	7.545e^-6	0.052	UPSTREAM Cyp6a18 INTERGENIC
X	1674533	X_1674533_SNP [dm3] X_1780500_SNP [dm6]	G	A	7.545e^-6	0.052	SYNONYMOUS_CODING Adar UTR_3_PRIME Adar INTRON CG42666
X	1674542	X_1674542_SNP [dm3] X_1780509_SNP [dm6]	A	G	7.545e^-6	0.052	SYNONYMOUS_CODING Adar UTR_3_PRIME Adar INTRON CG42666
X	1680786	X_1680786_SNP [dm3] X_1786753_SNP [dm6]	C	A	7.545e^-6	0.052	UTR_3_PRIME Adar INTRON CG42666
X	1683723	X_1683723_SNP [dm3] X_1789690_SNP [dm6]	A	C	7.545e^-6	0.052	UPSTREAM mir-981 INTRON CG42666 & 1 other
X	4331387	X_4331387_SNP [dm3] X_4437354_SNP [dm6]	A	G	7.581e^-6	0.052	INTRON CR32773 & 1 other
3L	13142762	3L_13142762_SNP [dm3] 3L_13149662_SNP [dm6]	C	T	7.659e^-6	0.053	INTERGENIC
3L	20026763	3L_20026763_SNP [dm3] 3L_20033663_SNP [dm6]	T	G	7.827e^-6	0.053	INTERGENIC
3R	25557173	3R_25557173_SNP [dm3] 3R_29731451_SNP [dm6]	G	A	7.829e^-6	0.053	SYNONYMOUS_CODING Kul UTR_3_PRIME Kul	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	25112938	3R_25112938_SNP [dm3] 3R_29287216_SNP [dm6]	T	G	7.836e^-6	0.053	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
X	20289703	X_20289703_SNP [dm3] X_20418676_SNP [dm6]	G	A	7.951e^-6	0.054	SYNONYMOUS_CODING Obp19c UPSTREAM Obp19d DOWNSTREAM Obp19b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15634082	3L_15634082_SNP [dm3] 3L_15640982_SNP [dm6]	A	G	7.990e^-6	0.054	INTRON comm3
3R	25938589	3R_25938589_SNP [dm3] 3R_30112867_SNP [dm6]	C	T	8.003e^-6	0.054	INTRON sima
3L	1853070	3L_1853070_SNP [dm3] 3L_1853070_SNP [dm6]	T	C	8.204e^-6	0.054	INTRON CG13936
3L	1853283	3L_1853283_SNP [dm3] 3L_1853283_SNP [dm6]	A	G	8.204e^-6	0.054	INTRON CG13936
3L	1853289	3L_1853289_SNP [dm3] 3L_1853289_SNP [dm6]	T	G	8.204e^-6	0.054	INTRON CG13936
3R	15856543	3R_15856543_SNP [dm3] 3R_20030821_SNP [dm6]	C	G	8.224e^-6	0.054	SYNONYMOUS_CODING trem	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8799442	2R_8799442_DEL [dm3] 2R_12911937_DEL [dm6]	CT	C	8.253e^-6	0.054	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	4057044	2L_4057044_SNP [dm3] 2L_4057044_SNP [dm6]	T	C	8.289e^-6	0.054	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7645704	3L_7645704_SNP [dm3] 3L_7652604_SNP [dm6]	A	G	8.338e^-6	0.055	SYNONYMOUS_CODING CG7492 DOWNSTREAM PGRP-SD INTRON CG32373
2L	6297018	2L_6297018_SNP [dm3] 2L_6297018_SNP [dm6]	T	C	8.446e^-6	0.055	SPLICE_SITE_REGION Ddr INTRON Ddr
3L	9512284	3L_9512284_SNP [dm3] 3L_9519184_SNP [dm6]	G	T	8.447e^-6	0.055	INTRON CG33700
3L	8712586	3L_8712586_SNP [dm3] 3L_8719486_SNP [dm6]	A	T	8.553e^-6	0.055	SYNONYMOUS_CODING SrpRbeta DOWNSTREAM CG32022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_ttk
3R	17232703	3R_17232703_SNP [dm3] 3R_21406981_SNP [dm6]	G	T	8.688e^-6	0.056	UPSTREAM CheB93a DOWNSTREAM CG7907 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1
3L	16746672	3L_16746672_SNP [dm3] 3L_16753572_SNP [dm6]	C	G	8.723e^-6	0.056	INTERGENIC	TF binding site mE1_TFBS_cad
3L	7105101	3L_7105101_SNP [dm3] 3L_7112001_SNP [dm6]	G	A	8.772e^-6	0.056	INTRON form3
3L	7105102	3L_7105102_SNP [dm3] 3L_7112002_SNP [dm6]	G	A	8.772e^-6	0.056	INTRON form3
X	1683602	X_1683602_SNP [dm3] X_1789569_SNP [dm6]	A	G	8.880e^-6	0.056	UTR_5_PRIME CG32806 UPSTREAM mir-981 INTRON CG42666
3R	24854219	3R_24854219_SNP [dm3] 3R_29028497_SNP [dm6]	G	A	8.882e^-6	0.056	SYNONYMOUS_CODING CG1951
3R	9623277	3R_9623277_SNP [dm3] 3R_13797555_SNP [dm6]	A	C	8.882e^-6	0.056	UPSTREAM tRNA:CR31588 DOWNSTREAM tRNA:CR31331 INTERGENIC	silencer mE1_HDAC_PRE
2R	17752790	2R_17752790_SNP [dm3] 2R_21865285_SNP [dm6]	A	C	8.886e^-6	0.056	SYNONYMOUS_CODING comr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	389486	3R_389486_SNP [dm3] 3R_4563764_SNP [dm6]	C	T	8.911e^-6	0.056	INTERGENIC	transposable element FlyBase
3R	17321314	3R_17321314_SNP [dm3] 3R_21495592_SNP [dm6]	G	C	8.952e^-6	0.056	INTERGENIC
X	9800251	X_9800251_SNP [dm3] X_9906218_SNP [dm6]	C	T	9.047e^-6	0.056	INTERGENIC
2R	14192913	2R_14192913_SNP [dm3] 2R_18305408_SNP [dm6]	C	T	9.091e^-6	0.056	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	9499388	3L_9499388_DEL [dm3] 3L_9506288_DEL [dm6]	AGA	G	9.114e^-6	0.056	UPSTREAM path DOWNSTREAM CG3408 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
X	8389314	X_8389314_DEL [dm3] X_8495281_DEL [dm6]	CATTC	C	9.161e^-6	0.056	INTRON CG33181
3R	24806674	3R_24806674_DEL [dm3] 3R_28980952_DEL [dm6]	TAC	T	9.225e^-6	0.056	INTERGENIC
3R	24806678	3R_24806678_SNP [dm3] 3R_28980956_SNP [dm6]	C	T	9.225e^-6	0.056	INTERGENIC
3R	22175129	3R_22175129_SNP [dm3] 3R_26349407_SNP [dm6]	C	A	9.227e^-6	0.056	INTRON CG33970
3R	22175139	3R_22175139_SNP [dm3] 3R_26349417_SNP [dm6]	A	G	9.227e^-6	0.056	INTRON CG33970
2R	3671000	2R_3671000_SNP [dm3] 2R_7783495_SNP [dm6]	G	A	9.260e^-6	0.056	SYNONYMOUS_CODING cn UPSTREAM CG30497 & 1 other EXON CR45108	TF binding site BDTNP1_TFBS_dl
3R	5215559	3R_5215559_DEL [dm3] 3R_9389837_DEL [dm6]	ATAAAG	A	9.270e^-6	0.056	INTRON FER
2R	14876472	2R_14876472_DEL [dm3] 2R_18988967_DEL [dm6]	ACTTGTTTTAAGTCA...	A	9.325e^-6	0.056	INTRON tn
2L	3434765	2L_3434765_SNP [dm3] 2L_3434765_SNP [dm6]	T	C	9.352e^-6	0.056	INTERGENIC
2L	3435322	2L_3435322_SNP [dm3] 2L_3435322_SNP [dm6]	G	A	9.381e^-6	0.056	INTERGENIC
3L	10268887	3L_10268887_SNP [dm3] 3L_10275787_SNP [dm6]	T	G	9.549e^-6	0.057	INTERGENIC
2R	14055255	2R_14055255_SNP [dm3] 2R_18167750_SNP [dm6]	A	T	9.580e^-6	0.057	UPSTREAM Nup75 DOWNSTREAM Dgp-1 INTRON CG42518 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	6553745	2L_6553745_SNP [dm3] 2L_6553745_SNP [dm6]	T	A	9.621e^-6	0.057	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8259626	2L_8259626_SNP [dm3] 2L_8259626_SNP [dm6]	G	A	9.625e^-6	0.057	UTR_3_PRIME Btk29A UPSTREAM mir-2b-1 DOWNSTREAM Btk29A
3L	9481073	3L_9481073_SNP [dm3] 3L_9487973_SNP [dm6]	A	G	9.684e^-6	0.057	UPSTREAM pall DOWNSTREAM CG32036 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_zfh1
2R	16165485	2R_16165485_SNP [dm3] 2R_20277980_SNP [dm6]	C	G	9.790e^-6	0.057	SYNONYMOUS_CODING CG9143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16165494	2R_16165494_SNP [dm3] 2R_20277989_SNP [dm6]	G	A	9.790e^-6	0.057	SYNONYMOUS_CODING CG9143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25553474	3R_25553474_SNP [dm3] 3R_29727752_SNP [dm6]	G	T	9.850e^-6	0.058	SYNONYMOUS_CODING Kul	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8387290	3L_8387290_SNP [dm3] 3L_8394190_SNP [dm6]	C	T	1.017e^-5	0.059	UPSTREAM Jon66Cii INTERGENIC
3L	8387299	3L_8387299_SNP [dm3] 3L_8394199_SNP [dm6]	A	G	1.017e^-5	0.059	UPSTREAM Jon66Cii INTERGENIC
3L	8387301	3L_8387301_SNP [dm3] 3L_8394201_SNP [dm6]	A	C	1.017e^-5	0.059	UPSTREAM Jon66Cii INTERGENIC
3L	3529604	3L_3529604_SNP [dm3] 3L_3529604_SNP [dm6]	G	A	1.018e^-5	0.059	INTRON Eip63E
3L	3558276	3L_3558276_INS [dm3] 3L_3558276_INS [dm6]	AA	TTGTCC	1.020e^-5	0.059	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16174421	3L_16174421_SNP [dm3] 3L_16181321_SNP [dm6]	A	G	1.033e^-5	0.059	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	5278188	X_5278188_SNP [dm3] X_5384155_SNP [dm6]	C	A	1.044e^-5	0.059	INTRON SK
3R	8975983	3R_8975983_SNP [dm3] 3R_13150261_SNP [dm6]	A	C	1.045e^-5	0.059	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
X	1680433	X_1680433_SNP [dm3] X_1786400_SNP [dm6]	G	C	1.045e^-5	0.059	UTR_3_PRIME Adar INTRON CG42666
X	1680466	X_1680466_SNP [dm3] X_1786433_SNP [dm6]	A	G	1.045e^-5	0.059	UTR_3_PRIME Adar INTRON CG42666
3R	24914960	3R_24914960_INS [dm3] 3R_29089238_INS [dm6]	T	TT	1.049e^-5	0.059	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	26625672	3R_26625672_SNP [dm3] 3R_30799950_SNP [dm6]	T	C	1.052e^-5	0.059	INTRON wts
3L	12841189	3L_12841189_SNP [dm3] 3L_12848089_SNP [dm6]	T	G	1.052e^-5	0.059	INTRON CG10948
3L	12842470	3L_12842470_SNP [dm3] 3L_12849370_SNP [dm6]	C	T	1.052e^-5	0.059	NON_SYNONYMOUS_CODING CG10948 UPSTREAM Wbp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13461638	3L_13461638_SNP [dm3] 3L_13468538_SNP [dm6]	A	T	1.054e^-5	0.059	SYNONYMOUS_CODING CG10089
2L	2910029	2L_2910029_SNP [dm3] 2L_2910029_SNP [dm6]	A	T	1.059e^-5	0.059	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	5243497	3R_5243497_SNP [dm3] 3R_9417775_SNP [dm6]	G	T	1.064e^-5	0.059	UPSTREAM ps DOWNSTREAM alpha-Man-II INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
3R	12875576	3R_12875576_SNP [dm3] 3R_17049854_SNP [dm6]	A	C	1.074e^-5	0.059	INTERGENIC
3R	12875577	3R_12875577_SNP [dm3] 3R_17049855_SNP [dm6]	T	A	1.074e^-5	0.059	INTERGENIC
3R	12875582	3R_12875582_MNP [dm3] 3R_17049860_MNP [dm6]	ATT	GAA	1.074e^-5	0.059	INTERGENIC
3L	2617611	3L_2617611_SNP [dm3] 3L_2617611_SNP [dm6]	A	G	1.090e^-5	0.06	INTRON Pxn
2R	10443389	2R_10443389_SNP [dm3] 2R_14555884_SNP [dm6]	T	C	1.094e^-5	0.06	INTRON ttv
3R	17320963	3R_17320963_SNP [dm3] 3R_21495241_SNP [dm6]	A	G	1.106e^-5	0.06	INTERGENIC	TF binding site mE1_TFBS_cad
3R	5224718	3R_5224718_SNP [dm3] 3R_9398996_SNP [dm6]	G	T	1.106e^-5	0.06	DOWNSTREAM CG34117 INTRON Or85f	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10122066	2L_10122066_SNP [dm3] 2L_10122066_SNP [dm6]	T	C	1.114e^-5	0.06	DOWNSTREAM CG13135 INTRON CG44153 & 1 other
X	16940770	X_16940770_SNP [dm3] X_17046737_SNP [dm6]	A	T	1.121e^-5	0.06	INTRON CG45002
2R	7983251	2R_7983251_SNP [dm3] 2R_12095746_SNP [dm6]	A	C	1.126e^-5	0.06	INTRON jeb
3L	5537329	3L_5537329_SNP [dm3] 3L_5544229_SNP [dm6]	G	A	1.136e^-5	0.06	DOWNSTREAM CG10625 INTRON CG10625
2R	11968206	2R_11968206_SNP [dm3] 2R_16080701_SNP [dm6]	G	A	1.138e^-5	0.06	DOWNSTREAM Dg INTERGENIC
2R	11968216	2R_11968216_SNP [dm3] 2R_16080711_SNP [dm6]	C	A	1.138e^-5	0.06	DOWNSTREAM Dg INTERGENIC
2R	11968220	2R_11968220_SNP [dm3] 2R_16080715_SNP [dm6]	T	C	1.138e^-5	0.06	DOWNSTREAM Dg INTERGENIC
3L	7647667	3L_7647667_SNP [dm3] 3L_7654567_SNP [dm6]	T	G	1.140e^-5	0.06	UTR_5_PRIME CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl
2L	10847150	2L_10847150_SNP [dm3] 2L_10847150_SNP [dm6]	T	C	1.140e^-5	0.06	UPSTREAM Porin2 DOWNSTREAM porin INTERGENIC
X	2731953	X_2731953_SNP [dm3] X_2837920_SNP [dm6]	A	G	1.148e^-5	0.061	INTRON kirre
2L	3111014	2L_3111014_SNP [dm3] 2L_3111014_SNP [dm6]	T	A	1.160e^-5	0.061	DOWNSTREAM PpD6 INTRON toc
3L	14159631	3L_14159631_SNP [dm3] 3L_14166531_SNP [dm6]	A	G	1.160e^-5	0.061	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10706371	3L_10706371_SNP [dm3] 3L_10713271_SNP [dm6]	T	G	1.162e^-5	0.061	INTERGENIC
3R	24782400	3R_24782400_SNP [dm3] 3R_28956678_SNP [dm6]	T	C	1.166e^-5	0.061	INTRON CG14521
X	2788384	X_2788384_SNP [dm3] X_2894351_SNP [dm6]	G	C	1.167e^-5	0.061	DOWNSTREAM CG3526 INTRON kirre
X	2788571	X_2788571_SNP [dm3] X_2894538_SNP [dm6]	C	T	1.167e^-5	0.061	DOWNSTREAM CG3526 INTRON kirre
2R	16165428	2R_16165428_SNP [dm3] 2R_20277923_SNP [dm6]	C	T	1.168e^-5	0.061	SYNONYMOUS_CODING CG9143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8553358	2R_8553358_SNP [dm3] 2R_12665853_SNP [dm6]	A	G	1.184e^-5	0.061	UPSTREAM nemy INTRON nemy	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1
3L	12669593	3L_12669593_SNP [dm3] 3L_12676493_SNP [dm6]	A	C	1.189e^-5	0.061	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18896263	3R_18896263_SNP [dm3] 3R_23070541_SNP [dm6]	A	T	1.191e^-5	0.061	UTR_3_PRIME CG13830
3R	20472730	3R_20472730_SNP [dm3] 3R_24647008_SNP [dm6]	C	T	1.196e^-5	0.061	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20472751	3R_20472751_SNP [dm3] 3R_24647029_SNP [dm6]	G	A	1.196e^-5	0.061	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18919808	3L_18919808_SNP [dm3] 3L_18926708_SNP [dm6]	A	T	1.205e^-5	0.061	DOWNSTREAM CG43049 INTRON CG32204	TF binding site mE1_TFBS_inv
3R	421088	3R_421088_SNP [dm3] 3R_4595366_SNP [dm6]	C	T	1.216e^-5	0.062	DOWNSTREAM CR44317 INTERGENIC
3R	9943032	3R_9943032_SNP [dm3] 3R_14117310_SNP [dm6]	T	A	1.222e^-5	0.062	INTRON Kif19A
X	17460820	X_17460820_SNP [dm3] X_17566787_SNP [dm6]	A	G	1.224e^-5	0.062	UTR_3_PRIME ppk23 DOWNSTREAM ppk23
3R	23303945	3R_23303945_SNP [dm3] 3R_27478223_SNP [dm6]	C	G	1.236e^-5	0.062	UPSTREAM Cyp6a18 INTERGENIC
3R	17667419	3R_17667419_SNP [dm3] 3R_21841697_SNP [dm6]	G	A	1.237e^-5	0.062	DOWNSTREAM Gr93b INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	19031863	3R_19031863_SNP [dm3] 3R_23206141_SNP [dm6]	C	T	1.239e^-5	0.062	INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	13101847	3R_13101847_SNP [dm3] 3R_17276125_SNP [dm6]	T	A	1.245e^-5	0.062	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	17677090	X_17677090_SNP [dm3] X_17783057_SNP [dm6]	C	A	1.246e^-5	0.062	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6296704	2L_6296704_SNP [dm3] 2L_6296704_SNP [dm6]	T	A	1.254e^-5	0.062	SYNONYMOUS_CODING Ddr
3R	23651089	3R_23651089_SNP [dm3] 3R_27825367_SNP [dm6]	C	T	1.254e^-5	0.062	INTRON CG34353
3R	18862378	3R_18862378_SNP [dm3] 3R_23036656_SNP [dm6]	A	T	1.262e^-5	0.062	INTERGENIC
2R	15533323	2R_15533323_SNP [dm3] 2R_19645818_SNP [dm6]	C	T	1.265e^-5	0.062	DOWNSTREAM CG15905 INTERGENIC
3R	17287766	3R_17287766_SNP [dm3] 3R_21462044_SNP [dm6]	A	G	1.266e^-5	0.062	INTERGENIC	TF binding site mE1_TFBS_cad
2R	11968059	2R_11968059_SNP [dm3] 2R_16080554_SNP [dm6]	C	T	1.267e^-5	0.062	DOWNSTREAM Dg INTERGENIC
3R	5238697	3R_5238697_SNP [dm3] 3R_9412975_SNP [dm6]	G	A	1.270e^-5	0.062	NON_SYNONYMOUS_CODING alpha-Man-II UPSTREAM Task7	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3R	430264	3R_430264_SNP [dm3] 3R_4604542_SNP [dm6]	T	C	1.271e^-5	0.062	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	5725042	X_5725042_SNP [dm3] X_5831009_SNP [dm6]	T	A	1.273e^-5	0.062	DOWNSTREAM CR43264 INTRON CG15765
X	5725046	X_5725046_SNP [dm3] X_5831013_SNP [dm6]	A	T	1.273e^-5	0.062	DOWNSTREAM CR43264 INTRON CG15765
X	5725128	X_5725128_SNP [dm3] X_5831095_SNP [dm6]	G	C	1.273e^-5	0.062	DOWNSTREAM CR43264 INTRON CG15765
3L	17145925	3L_17145925_SNP [dm3] 3L_17152825_SNP [dm6]	A	G	1.280e^-5	0.062	INTRON Rbp6
2R	6105495	2R_6105495_SNP [dm3] 2R_10217990_SNP [dm6]	A	G	1.287e^-5	0.062	INTRON Hr46 & 1 other	TF binding site mE1_TFBS_zfh1
2R	17142348	2R_17142348_SNP [dm3] 2R_21254843_SNP [dm6]	T	G	1.295e^-5	0.062	UPSTREAM Rgk3 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
X	19263021	X_19263021_DEL [dm3] X_19368988_DEL [dm6]	TT	T	1.297e^-5	0.062	INTRON kek5
3L	12298838	3L_12298838_SNP [dm3] 3L_12305738_SNP [dm6]	G	A	1.312e^-5	0.062	INTERGENIC
3L	12298847	3L_12298847_SNP [dm3] 3L_12305747_SNP [dm6]	C	G	1.312e^-5	0.062	INTERGENIC
X	14938359	X_14938359_SNP [dm3] X_15044326_SNP [dm6]	C	A	1.312e^-5	0.062	INTRON hiw & 1 other
X	14938368	X_14938368_SNP [dm3] X_15044335_SNP [dm6]	A	G	1.312e^-5	0.062	INTRON hiw & 1 other
3L	18668082	3L_18668082_SNP [dm3] 3L_18674982_SNP [dm6]	A	G	1.316e^-5	0.062	SPLICE_SITE_REGION GNBP2 UPSTREAM GNBP1 INTRON GNBP2	TF binding site mE1_TFBS_cad
3L	19175144	3L_19175144_SNP [dm3] 3L_19182044_SNP [dm6]	C	T	1.317e^-5	0.062	INTRON fz2	TF binding site mE1_TFBS_cad
3R	13314306	3R_13314306_SNP [dm3] 3R_17488584_SNP [dm6]	G	C	1.318e^-5	0.062	INTRON Dscam3
X	1680304	X_1680304_SNP [dm3] X_1786271_SNP [dm6]	C	A	1.321e^-5	0.062	UTR_3_PRIME Adar INTRON CG42666
3L	14159611	3L_14159611_DEL [dm3] 3L_14166511_DEL [dm6]	GGTAGAAGAACT...	G	1.324e^-5	0.062	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16108674	3R_16108674_SNP [dm3] 3R_20282952_SNP [dm6]	G	A	1.333e^-5	0.062	INTRON cic	TF binding site mE1_TFBS_inv
3L	4796640	3L_4796640_SNP [dm3] 3L_4796640_SNP [dm6]	G	C	1.336e^-5	0.062	DOWNSTREAM RhoGEF64C INTERGENIC
3L	4796650	3L_4796650_SNP [dm3] 3L_4796650_SNP [dm6]	C	G	1.336e^-5	0.062	DOWNSTREAM RhoGEF64C INTERGENIC
2L	7627297	2L_7627297_SNP [dm3] 2L_7627297_SNP [dm6]	T	G	1.339e^-5	0.062	INTERGENIC
3L	16689179	3L_16689179_SNP [dm3] 3L_16696079_SNP [dm6]	T	C	1.348e^-5	0.062	INTRON CR45179 & 2 others
3L	3730640	3L_3730640_SNP [dm3] 3L_3730640_SNP [dm6]	C	T	1.363e^-5	0.063	INTRON CG32264
3L	12932810	3L_12932810_SNP [dm3] 3L_12939710_SNP [dm6]	A	G	1.393e^-5	0.064	INTERGENIC
2L	5529201	2L_5529201_SNP [dm3] 2L_5529201_SNP [dm6]	C	T	1.405e^-5	0.065	SYNONYMOUS_CODING CG31915 INTRON Cap-D3	TF binding site mE1_TFBS_sens
X	9922290	X_9922290_SNP [dm3] X_10028257_SNP [dm6]	T	C	1.408e^-5	0.065	INTRON Cht6
2L	3640576	2L_3640576_SNP [dm3] 2L_3640576_SNP [dm6]	A	G	1.415e^-5	0.065	INTRON for	TF binding site mE1_TFBS_cad
3R	24160342	3R_24160342_SNP [dm3] 3R_28334620_SNP [dm6]	C	A	1.434e^-5	0.065	UTR_5_PRIME larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18718684	3L_18718684_SNP [dm3] 3L_18725584_SNP [dm6]	G	C	1.438e^-5	0.065	INTERGENIC
3R	20137603	3R_20137603_SNP [dm3] 3R_24311881_SNP [dm6]	G	C	1.454e^-5	0.066	SYNONYMOUS_CODING crb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7634255	3L_7634255_SNP [dm3] 3L_7641155_SNP [dm6]	C	T	1.459e^-5	0.066	SYNONYMOUS_CODING CG7506 UPSTREAM CG33276	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3R	20263372	3R_20263372_SNP [dm3] 3R_24437650_SNP [dm6]	A	G	1.474e^-5	0.066	INTRON nAChRalpha1	TF binding site BDTNP1_TFBS_hb
3L	10728361	3L_10728361_SNP [dm3] 3L_10735261_SNP [dm6]	A	T	1.482e^-5	0.066	INTERGENIC
3L	10728362	3L_10728362_SNP [dm3] 3L_10735262_SNP [dm6]	T	A	1.482e^-5	0.066	INTERGENIC
3L	10728364	3L_10728364_SNP [dm3] 3L_10735264_SNP [dm6]	G	A	1.482e^-5	0.066	INTERGENIC
3L	10728366	3L_10728366_MNP [dm3] 3L_10735266_MNP [dm6]	CTA	GCC	1.482e^-5	0.066	INTERGENIC
3L	10728379	3L_10728379_SNP [dm3] 3L_10735279_SNP [dm6]	C	A	1.482e^-5	0.066	INTERGENIC
3R	6401845	3R_6401845_SNP [dm3] 3R_10576123_SNP [dm6]	G	A	1.486e^-5	0.066	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18136427	3R_18136427_SNP [dm3] 3R_22310705_SNP [dm6]	G	T	1.490e^-5	0.066	UTR_3_PRIME CG34377
X	1678785	X_1678785_SNP [dm3] X_1784752_SNP [dm6]	T	C	1.498e^-5	0.066	UTR_3_PRIME Adar DOWNSTREAM Adar INTRON CG42666
3L	12890394	3L_12890394_SNP [dm3] 3L_12897294_SNP [dm6]	G	A	1.504e^-5	0.066	INTERGENIC
2R	14636168	2R_14636168_SNP [dm3] 2R_18748663_SNP [dm6]	G	A	1.507e^-5	0.066	INTRON Hs3st-A
3L	16777838	3L_16777838_SNP [dm3] 3L_16784738_SNP [dm6]	A	C	1.531e^-5	0.067	DOWNSTREAM Int6 INTRON CG9706	TF binding site mE1_TFBS_cad
3L	15642128	3L_15642128_SNP [dm3] 3L_15649028_SNP [dm6]	G	T	1.540e^-5	0.068	NON_SYNONYMOUS_CODING CG43083 UPSTREAM Eig71Eb DOWNSTREAM Eig71Ea
2L	9106827	2L_9106827_SNP [dm3] 2L_9106827_SNP [dm6]	G	A	1.558e^-5	0.068	INTERGENIC
2R	19965344	2R_19965344_SNP [dm3] 2R_24077821_SNP [dm6]	A	T	1.561e^-5	0.068	UTR_3_PRIME Mlp60A DOWNSTREAM CG10339	TF binding site mE1_TFBS_cad
3L	7651575	3L_7651575_SNP [dm3] 3L_7658475_SNP [dm6]	G	A	1.562e^-5	0.068	SYNONYMOUS_CODING Ank2 UTR_3_PRIME CG44195 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7651818	3L_7651818_SNP [dm3] 3L_7658718_SNP [dm6]	T	G	1.562e^-5	0.068	SYNONYMOUS_CODING Ank2 UTR_3_PRIME CG44195 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad
3L	7651830	3L_7651830_SNP [dm3] 3L_7658730_SNP [dm6]	C	T	1.562e^-5	0.068	SYNONYMOUS_CODING Ank2 UTR_3_PRIME CG44195 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad
3L	7651848	3L_7651848_SNP [dm3] 3L_7658748_SNP [dm6]	C	T	1.562e^-5	0.068	SYNONYMOUS_CODING Ank2 UTR_3_PRIME CG44195 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad
3R	16188342	3R_16188342_SNP [dm3] 3R_20362620_SNP [dm6]	T	G	1.565e^-5	0.068	INTERGENIC
3L	10293926	3L_10293926_SNP [dm3] 3L_10300826_SNP [dm6]	T	A	1.579e^-5	0.068	INTERGENIC
3R	25556321	3R_25556321_SNP [dm3] 3R_29730599_SNP [dm6]	T	C	1.584e^-5	0.068	INTRON Kul	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25556337	3R_25556337_SNP [dm3] 3R_29730615_SNP [dm6]	C	A	1.584e^-5	0.068	INTRON Kul	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3892266	2L_3892266_SNP [dm3] 2L_3892266_SNP [dm6]	A	G	1.585e^-5	0.068	INTRON capu
2R	6185552	2R_6185552_SNP [dm3] 2R_10298047_SNP [dm6]	A	G	1.593e^-5	0.068	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	7900858	X_7900858_DEL [dm3] X_8006825_DEL [dm6]	ACCCATCAAGATA...	A	1.600e^-5	0.068	INTRON Tbh	TF binding site mE1_TFBS_inv
3L	14063897	3L_14063897_SNP [dm3] 3L_14070797_SNP [dm6]	T	A	1.616e^-5	0.068	UTR_3_PRIME CG32138 DOWNSTREAM CG32138
3R	12875544	3R_12875544_SNP [dm3] 3R_17049822_SNP [dm6]	G	T	1.618e^-5	0.068	INTERGENIC
3R	12875692	3R_12875692_SNP [dm3] 3R_17049970_SNP [dm6]	A	G	1.618e^-5	0.068	INTERGENIC
2R	8580284	2R_8580284_SNP [dm3] 2R_12692779_SNP [dm6]	A	C	1.621e^-5	0.068	UPSTREAM CG8768 INTERGENIC	TF binding site BDTNP1_TFBS_Med
2R	8580319	2R_8580319_SNP [dm3] 2R_12692814_SNP [dm6]	C	T	1.621e^-5	0.068	UPSTREAM CG8768 INTERGENIC	TF binding site BDTNP1_TFBS_Med
2R	12106623	2R_12106623_SNP [dm3] 2R_16219118_SNP [dm6]	G	A	1.624e^-5	0.068	UPSTREAM tRNA:CR30239 & 1 other DOWNSTREAM tRNA:CR30238 INTRON mrj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12106633	2R_12106633_INS [dm3] 2R_16219128_INS [dm6]	G	GAG	1.624e^-5	0.068	UPSTREAM tRNA:CR30239 & 1 other DOWNSTREAM tRNA:CR30238 INTRON mrj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17395685	2L_17395685_DEL [dm3] 2L_17395685_DEL [dm6]	TA	T	1.628e^-5	0.068	INTRON CLIP-190	TF binding site mE1_TFBS_zfh1
2R	10747095	2R_10747095_SNP [dm3] 2R_14859590_SNP [dm6]	A	G	1.647e^-5	0.069	SYNONYMOUS_CODING U3-55K UPSTREAM CG33506	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	10728405	3L_10728405_MNP [dm3] 3L_10735305_MNP [dm6]	TGT	AAG	1.677e^-5	0.069	INTERGENIC
3R	12875592	3R_12875592_SNP [dm3] 3R_17049870_SNP [dm6]	A	G	1.677e^-5	0.069	INTERGENIC
3R	17064715	3R_17064715_SNP [dm3] 3R_21238993_SNP [dm6]	A	G	1.678e^-5	0.069	INTERGENIC	regulatory region REDfly_CRMs
2R	11968146	2R_11968146_SNP [dm3] 2R_16080641_SNP [dm6]	T	A	1.681e^-5	0.069	DOWNSTREAM Dg INTERGENIC
2R	4484491	2R_4484491_SNP [dm3] 2R_8596986_SNP [dm6]	A	C	1.692e^-5	0.07	UTR_3_PRIME CG8735 DOWNSTREAM CG8735
2R	12292025	2R_12292025_SNP [dm3] 2R_16404520_SNP [dm6]	T	G	1.704e^-5	0.07	INTRON Sema-2b
2R	6646610	2R_6646610_SNP [dm3] 2R_10759105_SNP [dm6]	T	C	1.714e^-5	0.07	INTRON CG33144
3R	15124640	3R_15124640_SNP [dm3] 3R_19298918_SNP [dm6]	G	T	1.716e^-5	0.07	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	13441226	3R_13441226_SNP [dm3] 3R_17615504_SNP [dm6]	T	A	1.725e^-5	0.071	DOWNSTREAM CG14327 INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	7649593	3L_7649593_SNP [dm3] 3L_7656493_SNP [dm6]	T	C	1.734e^-5	0.071	UTR_3_PRIME Ank2 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad
3L	7651608	3L_7651608_SNP [dm3] 3L_7658508_SNP [dm6]	T	A	1.734e^-5	0.071	SYNONYMOUS_CODING Ank2 UTR_3_PRIME CG44195 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17064690	3R_17064690_SNP [dm3] 3R_21238968_SNP [dm6]	C	T	1.741e^-5	0.071	INTERGENIC	regulatory region REDfly_CRMs
3R	6562026	3R_6562026_SNP [dm3] 3R_10736304_SNP [dm6]	T	C	1.744e^-5	0.071	UPSTREAM tomboy20 INTERGENIC
3L	16534707	3L_16534707_SNP [dm3] 3L_16541607_SNP [dm6]	C	A	1.749e^-5	0.071	INTRON CG43373
3R	13101771	3R_13101771_SNP [dm3] 3R_17276049_SNP [dm6]	G	T	1.750e^-5	0.071	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10911488	3L_10911488_SNP [dm3] 3L_10918388_SNP [dm6]	G	A	1.752e^-5	0.071	INTERGENIC
2R	9839787	2R_9839787_DEL [dm3] 2R_13952282_DEL [dm6]	ATCTTTAAACCA...	A	1.761e^-5	0.071	INTRON AGO1	TF binding site BDTNP1_TFBS_dl
2L	10847145	2L_10847145_SNP [dm3] 2L_10847145_SNP [dm6]	T	C	1.769e^-5	0.071	UPSTREAM Porin2 DOWNSTREAM porin INTERGENIC
3L	8400894	3L_8400894_SNP [dm3] 3L_8407794_SNP [dm6]	G	A	1.772e^-5	0.071	SYNONYMOUS_CODING Oseg1 DOWNSTREAM CG13667
3R	15141106	3R_15141106_SNP [dm3] 3R_19315384_SNP [dm6]	T	C	1.773e^-5	0.071	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14876489	2R_14876489_SNP [dm3] 2R_18988984_SNP [dm6]	T	G	1.778e^-5	0.071	INTRON tn
3L	2712421	3L_2712421_SNP [dm3] 3L_2712421_SNP [dm6]	A	C	1.787e^-5	0.071	UPSTREAM Fife INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10728411	3L_10728411_SNP [dm3] 3L_10735311_SNP [dm6]	T	A	1.818e^-5	0.072	INTERGENIC
3R	18862210	3R_18862210_INS [dm3] 3R_23036488_INS [dm6]	A	AAAATATGTATG...	1.827e^-5	0.072	UPSTREAM CG13833 INTERGENIC
3L	7651752	3L_7651752_SNP [dm3] 3L_7658652_SNP [dm6]	T	G	1.847e^-5	0.073	SYNONYMOUS_CODING Ank2 UTR_3_PRIME CG44195 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad
2R	10443388	2R_10443388_SNP [dm3] 2R_14555883_SNP [dm6]	C	T	1.854e^-5	0.073	INTRON ttv
3R	17321541	3R_17321541_SNP [dm3] 3R_21495819_SNP [dm6]	G	C	1.856e^-5	0.073	INTERGENIC
3R	22843682	3R_22843682_SNP [dm3] 3R_27017960_SNP [dm6]	A	T	1.860e^-5	0.073	SYNONYMOUS_CODING CG17192 DOWNSTREAM CG17191 INTRON RYa-R	TF binding site mE1_TFBS_cad
3R	24142946	3R_24142946_INS [dm3] 3R_28317224_INS [dm6]	C	CC	1.867e^-5	0.073	DOWNSTREAM larp INTERGENIC
X	3187794	X_3187794_SNP [dm3] X_3293761_SNP [dm6]	C	A	1.879e^-5	0.073	UTR_5_PRIME dnc INTRON dnc	TF binding site BDTNP1_TFBS_dl
3L	10946183	3L_10946183_DEL [dm3] 3L_10953083_DEL [dm6]	AG	A	1.882e^-5	0.073	INTERGENIC
3R	13024024	3R_13024024_SNP [dm3] 3R_17198302_SNP [dm6]	A	G	1.885e^-5	0.073	INTRON Mur89F
3L	8398060	3L_8398060_SNP [dm3] 3L_8404960_SNP [dm6]	T	C	1.893e^-5	0.073	NON_SYNONYMOUS_CODING CG33057 UTR_5_PRIME mkg-p UPSTREAM CG13667 & 1 other INTRON mkg-p	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8577966	2R_8577966_SNP [dm3] 2R_12690461_SNP [dm6]	C	T	1.897e^-5	0.073	NON_SYNONYMOUS_CODING Obp49a UPSTREAM CG30053 DOWNSTREAM CG8768
3L	10728374	3L_10728374_SNP [dm3] 3L_10735274_SNP [dm6]	T	A	1.900e^-5	0.073	INTERGENIC
2R	8580285	2R_8580285_SNP [dm3] 2R_12692780_SNP [dm6]	A	T	1.902e^-5	0.073	UPSTREAM CG8768 INTERGENIC	TF binding site BDTNP1_TFBS_Med
3L	10525093	3L_10525093_SNP [dm3] 3L_10531993_SNP [dm6]	C	A	1.908e^-5	0.073	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7651616	3L_7651616_SNP [dm3] 3L_7658516_SNP [dm6]	G	A	1.909e^-5	0.073	SYNONYMOUS_CODING Ank2 UTR_3_PRIME CG44195 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10688524	3L_10688524_SNP [dm3] 3L_10695424_SNP [dm6]	G	A	1.913e^-5	0.073	INTRON NijA
3L	16777840	3L_16777840_SNP [dm3] 3L_16784740_SNP [dm6]	C	G	1.928e^-5	0.074	DOWNSTREAM Int6 INTRON CG9706	TF binding site mE1_TFBS_cad
3R	12875546	3R_12875546_DEL [dm3] 3R_17049824_DEL [dm6]	ATTAGA	T	1.932e^-5	0.074	INTERGENIC
3L	11708724	3L_11708724_SNP [dm3] 3L_11715624_SNP [dm6]	C	G	1.932e^-5	0.074	UPSTREAM CG14132 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	8580329	2R_8580329_SNP [dm3] 2R_12692824_SNP [dm6]	T	A	1.958e^-5	0.075	UPSTREAM CG8768 INTERGENIC	TF binding site BDTNP1_TFBS_Med
3R	17219792	3R_17219792_SNP [dm3] 3R_21394070_SNP [dm6]	G	A	1.967e^-5	0.075	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	8316807	3L_8316807_DEL [dm3] 3L_8323707_DEL [dm6]	CG	A	1.972e^-5	0.075	INTERGENIC
2R	6185498	2R_6185498_SNP [dm3] 2R_10297993_SNP [dm6]	G	A	1.984e^-5	0.075	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	9722434	3R_9722434_SNP [dm3] 3R_13896712_SNP [dm6]	G	A	1.997e^-5	0.075	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18700592	3L_18700592_SNP [dm3] 3L_18707492_SNP [dm6]	A	T	1.997e^-5	0.075	UPSTREAM CR44674 INTERGENIC
3L	2015377	3L_2015377_SNP [dm3] 3L_2015377_SNP [dm6]	C	A	2.014e^-5	0.076	INTERGENIC	TF binding site mE1_TFBS_inv
2L	15254063	2L_15254063_SNP [dm3] 2L_15254063_SNP [dm6]	A	G	2.045e^-5	0.077	UTR_3_PRIME dao DOWNSTREAM dao & 1 other
2L	7479565	2L_7479565_SNP [dm3] 2L_7479565_SNP [dm6]	G	T	2.046e^-5	0.077	SYNONYMOUS_CODING Ziz	TF binding site mE1_TFBS_cad
3R	9943048	3R_9943048_SNP [dm3] 3R_14117326_SNP [dm6]	A	G	2.048e^-5	0.077	INTRON Kif19A
2R	17720474	2R_17720474_SNP [dm3] 2R_21832969_SNP [dm6]	A	G	2.066e^-5	0.077	SYNONYMOUS_CODING CG34040	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17807934	X_17807934_SNP [dm3] X_17913901_SNP [dm6]	T	C	2.076e^-5	0.077	INTRON CG6847
3L	14517438	3L_14517438_SNP [dm3] 3L_14524338_SNP [dm6]	A	C	2.083e^-5	0.077	INTRON bbg
3L	18712462	3L_18712462_SNP [dm3] 3L_18719362_SNP [dm6]	A	G	2.095e^-5	0.077	INTERGENIC
3L	18713437	3L_18713437_SNP [dm3] 3L_18720337_SNP [dm6]	G	A	2.095e^-5	0.077	INTERGENIC
3L	18715389	3L_18715389_SNP [dm3] 3L_18722289_SNP [dm6]	A	G	2.095e^-5	0.077	UTR_3_PRIME CG12477	TF binding site mE1_TFBS_cad
3R	21051539	3R_21051539_SNP [dm3] 3R_25225817_SNP [dm6]	A	G	2.112e^-5	0.078	SYNONYMOUS_CODING Cad96Cb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18020320	3R_18020320_SNP [dm3] 3R_22194598_SNP [dm6]	C	G	2.119e^-5	0.078	DOWNSTREAM CR45224 INTRON SKIP	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
3L	10394825	3L_10394825_SNP [dm3] 3L_10401725_SNP [dm6]	T	A	2.134e^-5	0.078	INTERGENIC
2L	13848172	2L_13848172_SNP [dm3] 2L_13848172_SNP [dm6]	C	T	2.140e^-5	0.078	DOWNSTREAM CG7916 INTRON CenG1A & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13189000	3L_13189000_SNP [dm3] 3L_13195900_SNP [dm6]	C	A	2.149e^-5	0.078	INTERGENIC
3L	14517426	3L_14517426_SNP [dm3] 3L_14524326_SNP [dm6]	T	G	2.160e^-5	0.078	INTRON bbg
3R	20469731	3R_20469731_SNP [dm3] 3R_24644009_SNP [dm6]	A	G	2.161e^-5	0.078	NON_SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6076531	2R_6076531_SNP [dm3] 2R_10189026_SNP [dm6]	A	G	2.168e^-5	0.078	INTRON KCNQ
2L	7989227	2L_7989227_DEL [dm3] 2L_7989227_DEL [dm6]	TGT	T	2.176e^-5	0.078	INTRON pes
3L	4801831	3L_4801831_INS [dm3] 3L_4801831_INS [dm6]	C	CC	2.176e^-5	0.078	UPSTREAM CR44528 INTERGENIC
3R	13745005	3R_13745005_SNP [dm3] 3R_17919283_SNP [dm6]	C	A	2.182e^-5	0.078	UPSTREAM cpo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	1705851	3R_1705851_SNP [dm3] 3R_5880129_SNP [dm6]	G	A	2.182e^-5	0.078	INTRON CG34113
3R	23315858	3R_23315858_SNP [dm3] 3R_27490136_SNP [dm6]	C	A	2.182e^-5	0.078	DOWNSTREAM Gr98a INTERGENIC
3R	23315867	3R_23315867_SNP [dm3] 3R_27490145_SNP [dm6]	G	A	2.182e^-5	0.078	DOWNSTREAM Gr98a INTERGENIC
2L	7272053	2L_7272053_SNP [dm3] 2L_7272053_SNP [dm6]	T	A	2.215e^-5	0.079	INTRON Wnt4
3R	23748159	3R_23748159_INS [dm3] 3R_27922437_INS [dm6]	T	TT	2.225e^-5	0.08	UPSTREAM RpL4 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	5824340	2L_5824340_SNP [dm3] 2L_5824340_SNP [dm6]	G	A	2.238e^-5	0.08	UTR_5_PRIME TrissinR UPSTREAM TrissinR
3R	18844576	3R_18844576_SNP [dm3] 3R_23018854_SNP [dm6]	T	G	2.243e^-5	0.08	INTERGENIC
3R	18844578	3R_18844578_INS [dm3] 3R_23018856_INS [dm6]	C	GT	2.243e^-5	0.08	INTERGENIC
3L	1090222	3L_1090222_SNP [dm3] 3L_1090222_SNP [dm6]	A	G	2.248e^-5	0.08	INTRON bab1	regulatory region REDfly_CRMs
3L	5575742	3L_5575742_SNP [dm3] 3L_5582642_SNP [dm6]	G	A	2.330e^-5	0.083	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7657119	3L_7657119_SNP [dm3] 3L_7664019_SNP [dm6]	G	C	2.344e^-5	0.083	NON_SYNONYMOUS_CODING CG44195 UTR_3_PRIME Ank2 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	10599310	3R_10599310_DEL [dm3] 3R_14773588_DEL [dm6]	ATATTAA	A	2.349e^-5	0.083	INTRON jvl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17219419	3R_17219419_SNP [dm3] 3R_21393697_SNP [dm6]	G	A	2.390e^-5	0.084	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3L	14844503	3L_14844503_SNP [dm3] 3L_14851403_SNP [dm6]	C	T	2.395e^-5	0.084	INTRON CG17839
2L	7994340	2L_7994340_SNP [dm3] 2L_7994340_SNP [dm6]	A	G	2.399e^-5	0.084	UPSTREAM pes & 1 other DOWNSTREAM CG7227 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_Trl
X	17807963	X_17807963_DEL [dm3] X_17913930_DEL [dm6]	TAGGTTT	T	2.422e^-5	0.085	INTRON CG6847
3R	10778496	3R_10778496_SNP [dm3] 3R_14952774_SNP [dm6]	G	A	2.447e^-5	0.086	INTERGENIC
3L	18715036	3L_18715036_SNP [dm3] 3L_18721936_SNP [dm6]	A	T	2.452e^-5	0.086	UTR_3_PRIME CG12477
X	6555875	X_6555875_SNP [dm3] X_6661842_SNP [dm6]	T	A	2.458e^-5	0.086	UPSTREAM CG3224 INTRON Ctr1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21051986	3R_21051986_SNP [dm3] 3R_25226264_SNP [dm6]	A	G	2.466e^-5	0.086	SYNONYMOUS_CODING Cad96Cb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6829669	3L_6829669_SNP [dm3] 3L_6836569_SNP [dm6]	G	A	2.488e^-5	0.086	INTERGENIC	TF binding site mE1_TFBS_inv
3L	13231450	3L_13231450_SNP [dm3] 3L_13238350_SNP [dm6]	G	A	2.502e^-5	0.087	INTRON caps
3L	531973	3L_531973_SNP [dm3] 3L_531973_SNP [dm6]	T	A	2.547e^-5	0.087	INTRON klar
3R	25552559	3R_25552559_SNP [dm3] 3R_29726837_SNP [dm6]	T	A	2.557e^-5	0.087	UTR_5_PRIME Kul INTRON Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25552761	3R_25552761_SNP [dm3] 3R_29727039_SNP [dm6]	G	A	2.557e^-5	0.087	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_Trl
X	4751927	X_4751927_SNP [dm3] X_4857894_SNP [dm6]	C	T	2.565e^-5	0.087	INTRON CG42594
3L	17690254	3L_17690254_SNP [dm3] 3L_17697154_SNP [dm6]	G	A	2.573e^-5	0.087	INTRON Ccn
3L	17690357	3L_17690357_SNP [dm3] 3L_17697257_SNP [dm6]	T	A	2.573e^-5	0.087	INTRON Ccn
3R	13641332	3R_13641332_SNP [dm3] 3R_17815610_SNP [dm6]	A	G	2.573e^-5	0.087	INTRON tinc
2L	12010473	2L_12010473_INS [dm3] 2L_12010473_INS [dm6]	A	AT	2.574e^-5	0.087	DOWNSTREAM Rh5 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	17046591	2L_17046591_DEL [dm3] 2L_17046591_DEL [dm6]	TT	T	2.575e^-5	0.087	DOWNSTREAM CG15136 INTERGENIC
2L	17046601	2L_17046601_SNP [dm3] 2L_17046601_SNP [dm6]	A	C	2.575e^-5	0.087	DOWNSTREAM CG15136 INTERGENIC
2L	17046615	2L_17046615_SNP [dm3] 2L_17046615_SNP [dm6]	G	C	2.575e^-5	0.087	DOWNSTREAM CG15136 INTERGENIC
X	7900879	X_7900879_SNP [dm3] X_8006846_SNP [dm6]	T	G	2.579e^-5	0.087	INTRON Tbh	TF binding site mE1_TFBS_inv
X	7900888	X_7900888_SNP [dm3] X_8006855_SNP [dm6]	G	T	2.579e^-5	0.087	INTRON Tbh	TF binding site mE1_TFBS_inv
3R	24247685	3R_24247685_SNP [dm3] 3R_28421963_SNP [dm6]	T	A	2.593e^-5	0.088	INTRON beat-VI
3R	23515354	3R_23515354_SNP [dm3] 3R_27689632_SNP [dm6]	C	G	2.601e^-5	0.088	INTRON CG12880	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4802254	3L_4802254_SNP [dm3] 3L_4802254_SNP [dm6]	G	A	2.604e^-5	0.088	DOWNSTREAM CG7509 EXON CR44528
3L	11204531	3L_11204531_SNP [dm3] 3L_11211431_SNP [dm6]	T	C	2.611e^-5	0.088	SYNONYMOUS_CODING CG7600 UPSTREAM Ube3a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	10728372	3L_10728372_SNP [dm3] 3L_10735272_SNP [dm6]	T	C	2.625e^-5	0.088	INTERGENIC
2R	18319894	2R_18319894_SNP [dm3] 2R_22432389_SNP [dm6]	T	C	2.635e^-5	0.088	INTERGENIC
3L	3368970	3L_3368970_SNP [dm3] 3L_3368970_SNP [dm6]	T	C	2.635e^-5	0.088	UPSTREAM Drs DOWNSTREAM kst INTERGENIC	regulatory region REDfly_CRMs
2R	8547317	2R_8547317_SNP [dm3] 2R_12659812_SNP [dm6]	T	A	2.638e^-5	0.088	UTR_3_PRIME nemy DOWNSTREAM CG8646
3L	5575367	3L_5575367_SNP [dm3] 3L_5582267_SNP [dm6]	G	T	2.646e^-5	0.088	INTERGENIC
3R	25990371	3R_25990371_SNP [dm3] 3R_30164649_SNP [dm6]	G	C	2.651e^-5	0.088	DOWNSTREAM CG31030 INTERGENIC
3R	22231526	3R_22231526_SNP [dm3] 3R_26405804_SNP [dm6]	T	A	2.665e^-5	0.088	INTERGENIC
2L	6296873	2L_6296873_SNP [dm3] 2L_6296873_SNP [dm6]	A	T	2.665e^-5	0.088	INTRON Ddr
X	17460743	X_17460743_DEL [dm3] X_17566710_DEL [dm6]	AA	A	2.675e^-5	0.088	UTR_3_PRIME ppk23 DOWNSTREAM ppk23
3R	16172146	3R_16172146_SNP [dm3] 3R_20346424_SNP [dm6]	G	A	2.682e^-5	0.088	INTERGENIC
X	16140001	X_16140001_SNP [dm3] X_16245968_SNP [dm6]	A	T	2.682e^-5	0.088	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	7994285	2L_7994285_SNP [dm3] 2L_7994285_SNP [dm6]	C	A	2.683e^-5	0.088	UPSTREAM pes & 1 other DOWNSTREAM CG7227 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_Trl
3L	10706873	3L_10706873_INS [dm3] 3L_10713773_INS [dm6]	C	TT	2.699e^-5	0.088	INTERGENIC
3L	18211806	3L_18211806_SNP [dm3] 3L_18218706_SNP [dm6]	C	T	2.701e^-5	0.088	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	5876508	3L_5876508_SNP [dm3] 3L_5883408_SNP [dm6]	C	T	2.721e^-5	0.088	SYNONYMOUS_CODING CG13287	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17027150	2L_17027150_SNP [dm3] 2L_17027150_SNP [dm6]	A	G	2.727e^-5	0.088	INTERGENIC
3R	496471	3R_496471_SNP [dm3] 3R_4670749_SNP [dm6]	C	G	2.756e^-5	0.088	INTRON CG43427
3L	12141929	3L_12141929_SNP [dm3] 3L_12148829_SNP [dm6]	C	T	2.757e^-5	0.088	SYNONYMOUS_CODING Nrx-IV UPSTREAM eap
3R	10594936	3R_10594936_SNP [dm3] 3R_14769214_SNP [dm6]	C	T	2.757e^-5	0.088	INTRON jvl
3R	25231352	3R_25231352_SNP [dm3] 3R_29405630_SNP [dm6]	G	A	2.757e^-5	0.088	INTRON Ptp99A
3R	27061416	3R_27061416_SNP [dm3] 3R_31235694_SNP [dm6]	T	C	2.757e^-5	0.088	UPSTREAM CG15564 DOWNSTREAM qless INTERGENIC
3R	27061746	3R_27061746_SNP [dm3] 3R_31236024_SNP [dm6]	C	T	2.757e^-5	0.088	UPSTREAM CG15564 DOWNSTREAM qless INTERGENIC
3R	27063523	3R_27063523_DEL [dm3] 3R_31237801_DEL [dm6]	ACGTAGG	A	2.757e^-5	0.088	INTRON qless
3R	27063580	3R_27063580_SNP [dm3] 3R_31237858_SNP [dm6]	T	G	2.757e^-5	0.088	INTRON qless
3R	27063582	3R_27063582_SNP [dm3] 3R_31237860_SNP [dm6]	C	A	2.757e^-5	0.088	INTRON qless
3R	27064011	3R_27064011_SNP [dm3] 3R_31238289_SNP [dm6]	T	A	2.757e^-5	0.088	INTRON qless
3R	27064754	3R_27064754_SNP [dm3] 3R_31239032_SNP [dm6]	T	A	2.757e^-5	0.088	INTRON qless
3R	27065129	3R_27065129_SNP [dm3] 3R_31239407_SNP [dm6]	G	C	2.757e^-5	0.088	INTRON qless
3R	27068968	3R_27068968_SNP [dm3] 3R_31243246_SNP [dm6]	T	C	2.757e^-5	0.088	INTRON qless
3R	27069016	3R_27069016_SNP [dm3] 3R_31243294_SNP [dm6]	C	T	2.757e^-5	0.088	INTRON qless
3R	27069731	3R_27069731_SNP [dm3] 3R_31244009_SNP [dm6]	A	G	2.757e^-5	0.088	INTRON qless
3L	8699361	3L_8699361_SNP [dm3] 3L_8706261_SNP [dm6]	T	C	2.789e^-5	0.089	INTERGENIC	TF binding site mE1_TFBS_cad
3R	10781901	3R_10781901_SNP [dm3] 3R_14956179_SNP [dm6]	T	C	2.800e^-5	0.089	INTERGENIC
3R	17064157	3R_17064157_SNP [dm3] 3R_21238435_SNP [dm6]	T	C	2.802e^-5	0.089	INTERGENIC	regulatory region REDfly_CRMs
3R	7112998	3R_7112998_SNP [dm3] 3R_11287276_SNP [dm6]	C	T	2.803e^-5	0.089	EXON CR31386
3R	17219664	3R_17219664_SNP [dm3] 3R_21393942_SNP [dm6]	A	C	2.810e^-5	0.089	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	2153030	3L_2153030_SNP [dm3] 3L_2153030_SNP [dm6]	A	T	2.818e^-5	0.089	DOWNSTREAM CG15822 INTERGENIC
3R	10601245	3R_10601245_SNP [dm3] 3R_14775523_SNP [dm6]	A	C	2.827e^-5	0.089	INTRON jvl
3L	5416309	3L_5416309_SNP [dm3] 3L_5423209_SNP [dm6]	G	A	2.840e^-5	0.089	UPSTREAM CG34391 INTERGENIC
2L	15118501	2L_15118501_SNP [dm3] 2L_15118501_SNP [dm6]	G	T	2.841e^-5	0.089	DOWNSTREAM stc INTERGENIC
3R	18573741	3R_18573741_SNP [dm3] 3R_22748019_SNP [dm6]	T	C	2.843e^-5	0.089	SYNONYMOUS_CODING CG31139 UPSTREAM CG17141 DOWNSTREAM rumi	TF binding site BDTNP1_TFBS_gt mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo
3L	18715035	3L_18715035_SNP [dm3] 3L_18721935_SNP [dm6]	T	A	2.851e^-5	0.089	UTR_3_PRIME CG12477
3R	18680217	3R_18680217_DEL [dm3] 3R_22854495_DEL [dm6]	GTGCTGG	G	2.859e^-5	0.089	INTERGENIC
3L	10728652	3L_10728652_SNP [dm3] 3L_10735552_SNP [dm6]	G	T	2.861e^-5	0.089	INTERGENIC
3R	12947026	3R_12947026_SNP [dm3] 3R_17121304_SNP [dm6]	T	A	2.877e^-5	0.089	UPSTREAM CG42779 DOWNSTREAM CG34278 INTRON cher
3R	26320899	3R_26320899_SNP [dm3] 3R_30495177_SNP [dm6]	G	A	2.879e^-5	0.089	INTRON PH4alphaMP	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	17931447	3L_17931447_SNP [dm3] 3L_17938347_SNP [dm6]	G	A	2.882e^-5	0.089	INTRON CG43174
3L	9603095	3L_9603095_SNP [dm3] 3L_9609995_SNP [dm6]	G	T	2.909e^-5	0.09	INTRON CG3280
3L	16925756	3L_16925756_SNP [dm3] 3L_16932656_SNP [dm6]	T	A	2.938e^-5	0.091	NON_SYNONYMOUS_CODING CG11905 INTRON CG11905	TF binding site mE1_TFBS_chinmo
3R	23007229	3R_23007229_SNP [dm3] 3R_27181507_SNP [dm6]	T	G	2.944e^-5	0.091	INTRON Ser	TF binding site mE1_TFBS_chinmo
2L	11158375	2L_11158375_SNP [dm3] 2L_11158375_SNP [dm6]	G	A	2.958e^-5	0.091	UTR_3_PRIME Ca-beta DOWNSTREAM Ca-beta
3R	25425487	3R_25425487_SNP [dm3] 3R_29599765_SNP [dm6]	T	C	2.965e^-5	0.091	SYNONYMOUS_CODING CG7568 DOWNSTREAM alph INTRON alph
2L	14928958	2L_14928958_SNP [dm3] 2L_14928958_SNP [dm6]	C	A	2.972e^-5	0.091	SYNONYMOUS_CODING CG3491 INTRON CG42313	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18696282	3L_18696282_SNP [dm3] 3L_18703182_SNP [dm6]	T	C	2.974e^-5	0.091	INTERGENIC
3R	26008311	3R_26008311_SNP [dm3] 3R_30182589_SNP [dm6]	G	A	2.975e^-5	0.091	INTERGENIC
2R	17400019	2R_17400019_INS [dm3] 2R_21512514_INS [dm6]	T	TCAGCTCAGTT...	2.988e^-5	0.091	UTR_3_PRIME MESK2 INTRON MESK2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	23838545	3L_23838545_SNP [dm3] 3L_23845445_SNP [dm6]	T	C	3.008e^-5	0.092	INTRON CG40470
2L	6296972	2L_6296972_SNP [dm3] 2L_6296972_SNP [dm6]	G	A	3.022e^-5	0.092	INTRON Ddr
X	15996156	X_15996156_SNP [dm3] X_16102123_SNP [dm6]	T	G	3.023e^-5	0.092	INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26442961	3R_26442961_SNP [dm3] 3R_30617239_SNP [dm6]	C	A	3.040e^-5	0.092	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8979664	2R_8979664_INS [dm3] 2R_13092159_INS [dm6]	T	TAT	3.044e^-5	0.092	INTERGENIC
X	7900873	X_7900873_SNP [dm3] X_8006840_SNP [dm6]	T	C	3.065e^-5	0.092	INTRON Tbh	TF binding site mE1_TFBS_inv
2L	3327202	2L_3327202_SNP [dm3] 2L_3327202_SNP [dm6]	A	G	3.067e^-5	0.092	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
3L	13220343	3L_13220343_SNP [dm3] 3L_13227243_SNP [dm6]	G	A	3.069e^-5	0.092	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
2R	20783579	2R_20783579_SNP [dm3] 2R_24896056_SNP [dm6]	A	T	3.079e^-5	0.092	INTRON NaCP60E	TF binding site mE1_TFBS_chinmo
X	5639728	X_5639728_SNP [dm3] X_5745695_SNP [dm6]	T	G	3.092e^-5	0.092	INTRON IntS6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3R	18862374	3R_18862374_SNP [dm3] 3R_23036652_SNP [dm6]	T	A	3.099e^-5	0.092	INTERGENIC
2L	11969981	2L_11969981_SNP [dm3] 2L_11969981_SNP [dm6]	C	T	3.103e^-5	0.092	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6009253	3R_6009253_SNP [dm3] 3R_10183531_SNP [dm6]	T	C	3.106e^-5	0.092	INTRON CG12814
3R	6009263	3R_6009263_SNP [dm3] 3R_10183541_SNP [dm6]	A	T	3.106e^-5	0.092	INTRON CG12814
3L	17689547	3L_17689547_SNP [dm3] 3L_17696447_SNP [dm6]	A	T	3.109e^-5	0.092	INTRON Ccn
X	19257004	X_19257004_SNP [dm3] X_19362971_SNP [dm6]	T	C	3.113e^-5	0.092	UTR_5_PRIME kek5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8546999	2R_8546999_SNP [dm3] 2R_12659494_SNP [dm6]	C	T	3.117e^-5	0.092	DOWNSTREAM nemy & 1 other INTERGENIC
2L	7330039	2L_7330039_SNP [dm3] 2L_7330039_SNP [dm6]	C	T	3.117e^-5	0.092	UPSTREAM CR45304 INTERGENIC
2L	7330113	2L_7330113_SNP [dm3] 2L_7330113_SNP [dm6]	A	T	3.117e^-5	0.092	UPSTREAM CR45304 INTERGENIC
3R	4017887	3R_4017887_SNP [dm3] 3R_8192165_SNP [dm6]	C	T	3.123e^-5	0.092	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
3L	9310841	3L_9310841_INS [dm3] 3L_9317741_INS [dm6]	G	TA	3.126e^-5	0.092	INTERGENIC
3L	13971325	3L_13971325_SNP [dm3] 3L_13978225_SNP [dm6]	C	T	3.151e^-5	0.093	UTR_3_PRIME CG17364 DOWNSTREAM Hsc70-1
3R	14166376	3R_14166376_SNP [dm3] 3R_18340654_SNP [dm6]	G	A	3.158e^-5	0.093	INTRON CG15803
3R	26138939	3R_26138939_SNP [dm3] 3R_30313217_SNP [dm6]	C	T	3.162e^-5	0.093	INTRON hdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14741289	2R_14741289_SNP [dm3] 2R_18853784_SNP [dm6]	G	T	3.188e^-5	0.093	NON_SYNONYMOUS_CODING Jheh1 UPSTREAM CG18190	TF binding site mE1_TFBS_cad
3L	8717007	3L_8717007_SNP [dm3] 3L_8723907_SNP [dm6]	C	A	3.195e^-5	0.093	SYNONYMOUS_CODING CG6511
3R	27063583	3R_27063583_INS [dm3] 3R_31237861_INS [dm6]	G	GGTATATTGATT...	3.195e^-5	0.093	INTRON qless
2L	17046321	2L_17046321_SNP [dm3] 2L_17046321_SNP [dm6]	A	G	3.212e^-5	0.094	DOWNSTREAM CG15136 INTERGENIC
3R	16108579	3R_16108579_SNP [dm3] 3R_20282857_SNP [dm6]	G	A	3.213e^-5	0.094	INTRON cic	TF binding site mE1_TFBS_inv
3R	26559016	3R_26559016_SNP [dm3] 3R_30733294_SNP [dm6]	T	C	3.219e^-5	0.094	INTERGENIC
3R	24156376	3R_24156376_SNP [dm3] 3R_28330654_SNP [dm6]	G	T	3.223e^-5	0.094	INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13629254	2L_13629254_SNP [dm3] 2L_13629254_SNP [dm6]	T	A	3.230e^-5	0.094	INTRON kuz
3R	27063533	3R_27063533_SNP [dm3] 3R_31237811_SNP [dm6]	G	A	3.264e^-5	0.094	INTRON qless
3R	27067323	3R_27067323_SNP [dm3] 3R_31241601_SNP [dm6]	C	T	3.264e^-5	0.094	INTRON qless
3R	27067324	3R_27067324_SNP [dm3] 3R_31241602_SNP [dm6]	C	T	3.264e^-5	0.094	INTRON qless
3R	27070001	3R_27070001_SNP [dm3] 3R_31244279_SNP [dm6]	G	T	3.264e^-5	0.094	INTRON qless
3R	26442708	3R_26442708_SNP [dm3] 3R_30616986_SNP [dm6]	G	T	3.280e^-5	0.094	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16428034	3L_16428034_SNP [dm3] 3L_16434934_SNP [dm6]	A	T	3.281e^-5	0.094	INTRON CG33158 & 1 other
3R	10012471	3R_10012471_SNP [dm3] 3R_14186749_SNP [dm6]	T	C	3.296e^-5	0.094	INTRON Dop1R1
3R	17210050	3R_17210050_SNP [dm3] 3R_21384328_SNP [dm6]	T	C	3.300e^-5	0.094	INTERGENIC	regulatory region REDfly_CRMs
3R	10777507	3R_10777507_SNP [dm3] 3R_14951785_SNP [dm6]	A	T	3.304e^-5	0.094	INTERGENIC
3R	24166604	3R_24166604_INS [dm3] 3R_28340882_INS [dm6]	T	TCG	3.330e^-5	0.095	INTRON Moca-cyp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
3R	24166607	3R_24166607_SNP [dm3] 3R_28340885_SNP [dm6]	A	T	3.330e^-5	0.095	INTRON Moca-cyp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
2L	3131988	2L_3131988_SNP [dm3] 2L_3131988_SNP [dm6]	A	C	3.368e^-5	0.096	INTRON toc
3L	18215343	3L_18215343_SNP [dm3] 3L_18222243_SNP [dm6]	T	C	3.373e^-5	0.096	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18319933	2R_18319933_DEL [dm3] 2R_22432428_DEL [dm6]	CAACGTGC	C	3.392e^-5	0.096	INTERGENIC
3R	24247668	3R_24247668_SNP [dm3] 3R_28421946_SNP [dm6]	C	T	3.396e^-5	0.096	INTRON beat-VI
3L	3158641	3L_3158641_SNP [dm3] 3L_3158641_SNP [dm6]	C	T	3.397e^-5	0.096	SYNONYMOUS_CODING NDUFS3 DOWNSTREAM BtbVII	TF binding site mE1_TFBS_sens
3R	17210010	3R_17210010_SNP [dm3] 3R_21384288_SNP [dm6]	T	C	3.408e^-5	0.096	INTERGENIC	regulatory region REDfly_CRMs
3R	17210011	3R_17210011_SNP [dm3] 3R_21384289_SNP [dm6]	C	G	3.408e^-5	0.096	INTERGENIC	regulatory region REDfly_CRMs
3L	14962323	3L_14962323_SNP [dm3] 3L_14969223_SNP [dm6]	T	G	3.423e^-5	0.096	UPSTREAM Tom INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	6646602	2R_6646602_SNP [dm3] 2R_10759097_SNP [dm6]	A	G	3.448e^-5	0.096	INTRON CG33144
2R	6646607	2R_6646607_SNP [dm3] 2R_10759102_SNP [dm6]	T	C	3.448e^-5	0.096	INTRON CG33144
2R	6646619	2R_6646619_SNP [dm3] 2R_10759114_SNP [dm6]	G	C	3.448e^-5	0.096	INTRON CG33144
2L	7020876	2L_7020876_SNP [dm3] 2L_7020876_SNP [dm6]	A	T	3.451e^-5	0.096	UPSTREAM Pcp INTRON ade3
X	13041608	X_13041608_SNP [dm3] X_13147575_SNP [dm6]	T	C	3.454e^-5	0.096	INTRON CG32645
3R	24160333	3R_24160333_SNP [dm3] 3R_28334611_SNP [dm6]	C	T	3.460e^-5	0.096	UTR_5_PRIME larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3392445	3R_3392445_SNP [dm3] 3R_7566723_SNP [dm6]	C	A	3.471e^-5	0.096	INTERGENIC
X	3467907	X_3467907_SNP [dm3] X_3573874_SNP [dm6]	T	A	3.472e^-5	0.096	UPSTREAM AstA-R1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	25556316	3R_25556316_SNP [dm3] 3R_29730594_SNP [dm6]	G	A	3.475e^-5	0.096	INTRON Kul	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9507985	3R_9507985_SNP [dm3] 3R_13682263_SNP [dm6]	A	G	3.479e^-5	0.096	SYNONYMOUS_CODING omd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	6098451	2R_6098451_SNP [dm3] 2R_10210946_SNP [dm6]	A	G	3.504e^-5	0.097	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	19025619	3R_19025619_SNP [dm3] 3R_23199897_SNP [dm6]	A	G	3.527e^-5	0.097	INTRON cnc	TF binding site mE1_TFBS_HSA
3L	11179436	3L_11179436_SNP [dm3] 3L_11186336_SNP [dm6]	C	T	3.529e^-5	0.097	INTRON GlcAT-P
2R	8989985	2R_8989985_SNP [dm3] 2R_13102480_SNP [dm6]	G	A	3.540e^-5	0.097	INTERGENIC
3R	19031843	3R_19031843_SNP [dm3] 3R_23206121_SNP [dm6]	A	G	3.545e^-5	0.097	INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	19031859	3R_19031859_SNP [dm3] 3R_23206137_SNP [dm6]	T	A	3.545e^-5	0.097	INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	6297020	2L_6297020_SNP [dm3] 2L_6297020_SNP [dm6]	T	C	3.559e^-5	0.097	SPLICE_SITE_REGION Ddr INTRON Ddr
3L	12308891	3L_12308891_SNP [dm3] 3L_12315791_SNP [dm6]	C	A	3.568e^-5	0.097	INTERGENIC
3R	23011064	3R_23011064_SNP [dm3] 3R_27185342_SNP [dm6]	A	G	3.569e^-5	0.097	INTRON Ser	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2291794	X_2291794_SNP [dm3] X_2397761_SNP [dm6]	A	T	3.577e^-5	0.097	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	2291941	X_2291941_SNP [dm3] X_2397908_SNP [dm6]	C	T	3.577e^-5	0.097	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
X	2292077	X_2292077_SNP [dm3] X_2398044_SNP [dm6]	A	G	3.577e^-5	0.097	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	13228164	3L_13228164_SNP [dm3] 3L_13235064_SNP [dm6]	T	C	3.586e^-5	0.098	INTRON caps
X	12999903	X_12999903_SNP [dm3] X_13105870_SNP [dm6]	T	A	3.594e^-5	0.098	INTRON CG43313
3L	15642274	3L_15642274_SNP [dm3] 3L_15649174_SNP [dm6]	A	C	3.606e^-5	0.098	UTR_3_PRIME Eig71Ea UPSTREAM Eig71Eb DOWNSTREAM CG43083
3R	21066137	3R_21066137_SNP [dm3] 3R_25240415_SNP [dm6]	G	A	3.615e^-5	0.098	SYNONYMOUS_CODING to	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12296588	3L_12296588_SNP [dm3] 3L_12303488_SNP [dm6]	T	A	3.632e^-5	0.098	UPSTREAM CR44551 INTERGENIC
3L	12693093	3L_12693093_SNP [dm3] 3L_12699993_SNP [dm6]	A	G	3.637e^-5	0.098	INTRON mirr	TF binding site BDTNP1_TFBS_twi
X	9738614	X_9738614_SNP [dm3] X_9844581_SNP [dm6]	A	T	3.665e^-5	0.099	INTRON CG32698
3R	4017888	3R_4017888_SNP [dm3] 3R_8192166_SNP [dm6]	C	T	3.672e^-5	0.099	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
X	21452030	X_21452030_SNP [dm3] X_21581003_SNP [dm6]	G	C	3.704e^-5	0.099	INTERGENIC
2L	5544585	2L_5544585_SNP [dm3] 2L_5544585_SNP [dm6]	C	T	3.707e^-5	0.099	SYNONYMOUS_CODING Lam	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	5544588	2L_5544588_SNP [dm3] 2L_5544588_SNP [dm6]	C	T	3.707e^-5	0.099	SYNONYMOUS_CODING Lam	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	10700263	2R_10700263_SNP [dm3] 2R_14812758_SNP [dm6]	A	G	3.709e^-5	0.099	INTERGENIC	regulatory region REDfly_CRMs
2R	10700307	2R_10700307_SNP [dm3] 2R_14812802_SNP [dm6]	T	C	3.709e^-5	0.099	INTERGENIC	regulatory region REDfly_CRMs
2R	10700329	2R_10700329_SNP [dm3] 2R_14812824_SNP [dm6]	C	G	3.709e^-5	0.099	INTERGENIC	regulatory region REDfly_CRMs
2R	8577619	2R_8577619_SNP [dm3] 2R_12690114_SNP [dm6]	G	A	3.709e^-5	0.099	UTR_3_PRIME Obp49a UPSTREAM CG30053
2R	8577620	2R_8577620_SNP [dm3] 2R_12690115_SNP [dm6]	A	C	3.709e^-5	0.099	UTR_3_PRIME Obp49a UPSTREAM CG30053
3R	6561940	3R_6561940_SNP [dm3] 3R_10736218_SNP [dm6]	T	C	3.735e^-5	0.099	UPSTREAM tomboy20 INTERGENIC
3L	8896499	3L_8896499_SNP [dm3] 3L_8903399_SNP [dm6]	T	C	3.741e^-5	0.099	INTRON TrpA1 EXON tRNA:T:Psi
3R	24107259	3R_24107259_SNP [dm3] 3R_28281537_SNP [dm6]	T	G	3.742e^-5	0.099	INTERGENIC
2R	8803231	2R_8803231_SNP [dm3] 2R_12915726_SNP [dm6]	G	A	3.768e^-5	0.1	UPSTREAM NAT1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1385954	2L_1385954_SNP [dm3] 2L_1385954_SNP [dm6]	C	G	3.773e^-5	0.1	INTRON lea
3L	8999947	3L_8999947_SNP [dm3] 3L_9006847_SNP [dm6]	C	T	3.777e^-5	0.1	NON_SYNONYMOUS_CODING Doc3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	18599784	3R_18599784_SNP [dm3] 3R_22774062_SNP [dm6]	T	C	3.781e^-5	0.1	UPSTREAM mir-4953 INTRON Usp12-46 & 1 other
3R	18599785	3R_18599785_SNP [dm3] 3R_22774063_SNP [dm6]	C	T	3.781e^-5	0.1	UPSTREAM mir-4953 INTRON Usp12-46 & 1 other
3R	14166393	3R_14166393_SNP [dm3] 3R_18340671_SNP [dm6]	C	A	3.794e^-5	0.1	INTRON CG15803
3L	8896461	3L_8896461_SNP [dm3] 3L_8903361_SNP [dm6]	T	A	3.832e^-5	0.1	INTRON TrpA1 EXON tRNA:T:Psi
3R	9791655	3R_9791655_SNP [dm3] 3R_13965933_SNP [dm6]	G	A	3.832e^-5	0.1	SYNONYMOUS_CODING Orc2
3R	17064755	3R_17064755_SNP [dm3] 3R_21239033_SNP [dm6]	T	C	3.840e^-5	0.1	INTERGENIC	regulatory region REDfly_CRMs
3R	17064758	3R_17064758_SNP [dm3] 3R_21239036_SNP [dm6]	C	T	3.840e^-5	0.1	INTERGENIC	regulatory region REDfly_CRMs
X	19701577	X_19701577_SNP [dm3] X_19807544_SNP [dm6]	G	A	3.858e^-5	0.101	INTERGENIC
3L	18672275	3L_18672275_SNP [dm3] 3L_18679175_SNP [dm6]	G	C	3.888e^-5	0.101	INTERGENIC
2R	10138716	2R_10138716_SNP [dm3] 2R_14251211_SNP [dm6]	G	C	3.898e^-5	0.101	NON_SYNONYMOUS_CODING Mdr50	TF binding site mE1_TFBS_cad
3R	21051359	3R_21051359_SNP [dm3] 3R_25225637_SNP [dm6]	T	C	3.910e^-5	0.101	SYNONYMOUS_CODING Cad96Cb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7254150	2L_7254150_SNP [dm3] 2L_7254150_SNP [dm6]	T	G	3.911e^-5	0.101	INTERGENIC
2R	11582907	2R_11582907_SNP [dm3] 2R_15695402_SNP [dm6]	T	C	3.925e^-5	0.102	NON_SYNONYMOUS_CODING CG33461 DOWNSTREAM CG33460
3R	22843793	3R_22843793_SNP [dm3] 3R_27018071_SNP [dm6]	G	C	3.945e^-5	0.102	NON_SYNONYMOUS_CODING CG17192 DOWNSTREAM CG17191 INTRON RYa-R	TF binding site mE1_TFBS_cad
2R	14973937	2R_14973937_SNP [dm3] 2R_19086432_SNP [dm6]	C	T	3.961e^-5	0.102	INTRON 5-HT1A
3R	19293033	3R_19293033_SNP [dm3] 3R_23467311_SNP [dm6]	T	C	3.977e^-5	0.102	INTRON CG4374
3R	19293539	3R_19293539_SNP [dm3] 3R_23467817_SNP [dm6]	T	C	3.977e^-5	0.102	INTRON CG4374
3R	19293998	3R_19293998_SNP [dm3] 3R_23468276_SNP [dm6]	T	G	3.977e^-5	0.102	INTRON CG4374
2L	11969989	2L_11969989_SNP [dm3] 2L_11969989_SNP [dm6]	A	T	3.995e^-5	0.103	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24166601	3R_24166601_SNP [dm3] 3R_28340879_SNP [dm6]	A	T	4.009e^-5	0.103	INTRON Moca-cyp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
3R	24166608	3R_24166608_SNP [dm3] 3R_28340886_SNP [dm6]	G	T	4.009e^-5	0.103	INTRON Moca-cyp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
3R	17093531	3R_17093531_SNP [dm3] 3R_21267809_SNP [dm6]	A	T	4.018e^-5	0.103	INTRON Rab1	TF binding site BDTNP1_TFBS_dl
X	2292093	X_2292093_INS [dm3] X_2398060_INS [dm6]	A	ATACGTACTATGCATCCTAG...	4.019e^-5	0.103	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	14119833	2R_14119833_SNP [dm3] 2R_18232328_SNP [dm6]	A	G	4.041e^-5	0.103	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	14120040	2R_14120040_SNP [dm3] 2R_18232535_SNP [dm6]	A	T	4.041e^-5	0.103	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	1544073	2L_1544073_SNP [dm3] 2L_1544073_SNP [dm6]	C	T	4.041e^-5	0.103	INTERGENIC
3R	16736979	3R_16736979_SNP [dm3] 3R_20911257_SNP [dm6]	A	T	4.094e^-5	0.104	UTR_3_PRIME CG31191 UPSTREAM CR44106	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3709582	3L_3709582_SNP [dm3] 3L_3709582_SNP [dm6]	C	T	4.100e^-5	0.104	DOWNSTREAM CR45675 INTERGENIC
3L	10250740	3L_10250740_SNP [dm3] 3L_10257640_SNP [dm6]	A	G	4.105e^-5	0.104	INTERGENIC
2R	18763061	2R_18763061_SNP [dm3] 2R_22875538_SNP [dm6]	A	C	4.108e^-5	0.104	UPSTREAM CR45469 INTRON PIP5K59B	TF binding site mE1_TFBS_HSA
3L	5563771	3L_5563771_SNP [dm3] 3L_5570671_SNP [dm6]	T	C	4.114e^-5	0.104	INTRON Msr-110
2R	14743486	2R_14743486_SNP [dm3] 2R_18855981_SNP [dm6]	G	A	4.130e^-5	0.104	SYNONYMOUS_CODING Jheh2 UPSTREAM Jheh1
3R	23012273	3R_23012273_SNP [dm3] 3R_27186551_SNP [dm6]	C	T	4.138e^-5	0.104	INTRON Ser	regulatory region REDfly_CRMs
3L	836335	3L_836335_SNP [dm3] 3L_836335_SNP [dm6]	C	A	4.177e^-5	0.105	NON_SYNONYMOUS_CODING CG42554 DOWNSTREAM CG42553 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1739857	2L_1739857_SNP [dm3] 2L_1739857_SNP [dm6]	C	A	4.199e^-5	0.105	INTRON CG17646
3R	17318142	3R_17318142_SNP [dm3] 3R_21492420_SNP [dm6]	A	C	4.202e^-5	0.105	INTERGENIC
3R	10594960	3R_10594960_SNP [dm3] 3R_14769238_SNP [dm6]	T	C	4.205e^-5	0.105	INTRON jvl
2L	13646574	2L_13646574_SNP [dm3] 2L_13646574_SNP [dm6]	T	C	4.209e^-5	0.105	INTERGENIC
3R	24156358	3R_24156358_SNP [dm3] 3R_28330636_SNP [dm6]	C	T	4.212e^-5	0.105	INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11435680	3L_11435680_INS [dm3] 3L_11442580_INS [dm6]	A	ACAAAA	4.232e^-5	0.106	INTERGENIC
3R	10082647	3R_10082647_SNP [dm3] 3R_14256925_SNP [dm6]	A	G	4.241e^-5	0.106	UTR_3_PRIME CG43179 INTRON Aats-met
2L	14291262	2L_14291262_SNP [dm3] 2L_14291262_SNP [dm6]	T	A	4.253e^-5	0.106	INTRON wb & 1 other EXON CR43639
3R	9722384	3R_9722384_SNP [dm3] 3R_13896662_SNP [dm6]	G	T	4.261e^-5	0.106	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9440623	3R_9440623_SNP [dm3] 3R_13614901_SNP [dm6]	G	T	4.263e^-5	0.106	INTERGENIC
3R	16578164	3R_16578164_SNP [dm3] 3R_20752442_SNP [dm6]	A	C	4.263e^-5	0.106	INTRON CG42322	TF binding site BDTNP1_TFBS_dl
2R	8577610	2R_8577610_SNP [dm3] 2R_12690105_SNP [dm6]	G	T	4.267e^-5	0.106	UTR_3_PRIME Obp49a UPSTREAM CG30053
2R	6646579	2R_6646579_SNP [dm3] 2R_10759074_SNP [dm6]	A	T	4.275e^-5	0.106	INTRON CG33144
3R	15081739	3R_15081739_SNP [dm3] 3R_19256017_SNP [dm6]	T	C	4.279e^-5	0.106	UPSTREAM CG14280 INTERGENIC
3R	9283189	3R_9283189_SNP [dm3] 3R_13457467_SNP [dm6]	G	A	4.281e^-5	0.106	SYNONYMOUS_CODING CG14372 INTRON CR17025
X	14905570	X_14905570_SNP [dm3] X_15011537_SNP [dm6]	G	A	4.306e^-5	0.106	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
X	14905595	X_14905595_SNP [dm3] X_15011562_SNP [dm6]	G	A	4.306e^-5	0.106	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
3R	12875557	3R_12875557_SNP [dm3] 3R_17049835_SNP [dm6]	T	A	4.307e^-5	0.106	INTERGENIC
3R	24107171	3R_24107171_SNP [dm3] 3R_28281449_SNP [dm6]	C	T	4.307e^-5	0.106	INTERGENIC
3R	16986854	3R_16986854_SNP [dm3] 3R_21161132_SNP [dm6]	C	G	4.325e^-5	0.106	UPSTREAM CG10824 INTRON SNF4Agamma
2L	15798310	2L_15798310_SNP [dm3] 2L_15798310_SNP [dm6]	A	G	4.342e^-5	0.106	INTERGENIC
3L	13228163	3L_13228163_SNP [dm3] 3L_13235063_SNP [dm6]	T	G	4.350e^-5	0.106	INTRON caps
2L	15798662	2L_15798662_SNP [dm3] 2L_15798662_SNP [dm6]	T	A	4.350e^-5	0.106	INTERGENIC
3R	13447339	3R_13447339_SNP [dm3] 3R_17621617_SNP [dm6]	T	A	4.364e^-5	0.106	NON_SYNONYMOUS_CODING CG14323 UPSTREAM tRNA:CR33534
3R	13447342	3R_13447342_SNP [dm3] 3R_17621620_SNP [dm6]	G	A	4.364e^-5	0.106	NON_SYNONYMOUS_CODING CG14323 UPSTREAM tRNA:CR33534
3L	15663606	3L_15663606_SNP [dm3] 3L_15670506_SNP [dm6]	G	C	4.381e^-5	0.106	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med
X	6554046	X_6554046_SNP [dm3] X_6660013_SNP [dm6]	C	T	4.384e^-5	0.106	DOWNSTREAM CG3224 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7646956	3L_7646956_SNP [dm3] 3L_7653856_SNP [dm6]	A	G	4.398e^-5	0.107	NON_SYNONYMOUS_CODING CG7492 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	17331991	X_17331991_SNP [dm3] X_17437958_SNP [dm6]	T	C	4.402e^-5	0.107	INTRON CG12994
3R	19050716	3R_19050716_SNP [dm3] 3R_23224994_SNP [dm6]	G	C	4.409e^-5	0.107	INTRON cnc	TF binding site BDTNP1_TFBS_dl
X	17256789	X_17256789_SNP [dm3] X_17362756_SNP [dm6]	T	G	4.425e^-5	0.107	INTERGENIC
2R	10700322	2R_10700322_SNP [dm3] 2R_14812817_SNP [dm6]	C	A	4.434e^-5	0.107	INTERGENIC	regulatory region REDfly_CRMs
2R	8577667	2R_8577667_SNP [dm3] 2R_12690162_SNP [dm6]	G	T	4.434e^-5	0.107	UTR_3_PRIME Obp49a UPSTREAM CG30053
X	12329498	X_12329498_SNP [dm3] X_12435465_SNP [dm6]	T	A	4.445e^-5	0.107	INTRON Pkcdelta
2R	13998581	2R_13998581_SNP [dm3] 2R_18111076_SNP [dm6]	C	T	4.457e^-5	0.107	DOWNSTREAM CG34196 INTERGENIC
3R	8730871	3R_8730871_SNP [dm3] 3R_12905149_SNP [dm6]	C	A	4.469e^-5	0.107	INTERGENIC
3R	8733006	3R_8733006_SNP [dm3] 3R_12907284_SNP [dm6]	A	G	4.469e^-5	0.107	INTERGENIC
2R	8545162	2R_8545162_SNP [dm3] 2R_12657657_SNP [dm6]	T	C	4.480e^-5	0.107	INTRON CG8646	TF binding site mE1_TFBS_cad
2R	15430624	2R_15430624_SNP [dm3] 2R_19543119_SNP [dm6]	G	A	4.501e^-5	0.108	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	16336744	3R_16336744_SNP [dm3] 3R_20511022_SNP [dm6]	G	A	4.502e^-5	0.108	UPSTREAM CG4288 INTRON CG4288
X	21839966	X_21839966_SNP [dm3] X_22438131_SNP [dm6]	A	T	4.514e^-5	0.108	INTERGENIC	transposable element FlyBase
3R	18548151	3R_18548151_SNP [dm3] 3R_22722429_SNP [dm6]	A	C	4.571e^-5	0.109	NON_SYNONYMOUS_CODING Irp-1A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19796196	2R_19796196_SNP [dm3] 2R_23908673_SNP [dm6]	C	T	4.573e^-5	0.109	INTRON kcc EXON CR44806	TF binding site BDTNP1_TFBS_da
X	7051651	X_7051651_SNP [dm3] X_7157618_SNP [dm6]	T	A	4.577e^-5	0.109	INTRON CG9650	TF binding site BDTNP1_TFBS_dl
2L	12400749	2L_12400749_SNP [dm3] 2L_12400749_SNP [dm6]	A	C	4.580e^-5	0.109	SPLICE_SITE_REGION Pkd2 SYNONYMOUS_CODING Pkd2
3R	8966294	3R_8966294_DEL [dm3] 3R_13140572_DEL [dm6]	ACCAA	A	4.583e^-5	0.109	INTRON timeout & 2 others
2L	3640514	2L_3640514_SNP [dm3] 2L_3640514_SNP [dm6]	A	T	4.647e^-5	0.11	UTR_5_PRIME for	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8986803	3R_8986803_SNP [dm3] 3R_13161081_SNP [dm6]	G	A	4.654e^-5	0.11	INTRON timeout
3R	23589606	3R_23589606_SNP [dm3] 3R_27763884_SNP [dm6]	G	A	4.663e^-5	0.11	INTERGENIC
X	3187793	X_3187793_SNP [dm3] X_3293760_SNP [dm6]	A	C	4.671e^-5	0.11	UTR_5_PRIME dnc INTRON dnc	TF binding site BDTNP1_TFBS_dl
3R	27124410	3R_27124410_SNP [dm3] 3R_31298688_SNP [dm6]	G	T	4.685e^-5	0.11	INTERGENIC
3R	24020800	3R_24020800_SNP [dm3] 3R_28195078_SNP [dm6]	G	C	4.689e^-5	0.11	INTRON CG34354
2L	8583445	2L_8583445_SNP [dm3] 2L_8583445_SNP [dm6]	A	T	4.700e^-5	0.11	INTRON Sema-1a
3R	12875706	3R_12875706_SNP [dm3] 3R_17049984_SNP [dm6]	T	C	4.706e^-5	0.11	INTERGENIC
2L	13277963	2L_13277963_SNP [dm3] 2L_13277963_SNP [dm6]	A	G	4.737e^-5	0.111	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9531921	3R_9531921_SNP [dm3] 3R_13706199_SNP [dm6]	C	T	4.747e^-5	0.111	UPSTREAM Adgf-D & 1 other INTERGENIC
2R	14876459	2R_14876459_SNP [dm3] 2R_18988954_SNP [dm6]	A	C	4.760e^-5	0.111	INTRON tn
3L	10946186	3L_10946186_SNP [dm3] 3L_10953086_SNP [dm6]	A	G	4.777e^-5	0.111	INTERGENIC
3L	17111235	3L_17111235_SNP [dm3] 3L_17118135_SNP [dm6]	C	T	4.781e^-5	0.111	INTRON Rbp6
3R	18906988	3R_18906988_SNP [dm3] 3R_23081266_SNP [dm6]	A	G	4.783e^-5	0.111	INTRON CG13830	TF binding site mE1_TFBS_cad
3R	9517586	3R_9517586_SNP [dm3] 3R_13691864_SNP [dm6]	A	T	4.784e^-5	0.111	UTR_3_PRIME flfl
2R	8577638	2R_8577638_SNP [dm3] 2R_12690133_SNP [dm6]	T	G	4.796e^-5	0.111	UTR_3_PRIME Obp49a UPSTREAM CG30053
3R	13441815	3R_13441815_INS [dm3] 3R_17616093_INS [dm6]	A	AA	4.827e^-5	0.112	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	7789037	2L_7789037_SNP [dm3] 2L_7789037_SNP [dm6]	C	T	4.832e^-5	0.112	INTRON CG7149
X	12448927	X_12448927_SNP [dm3] X_12554894_SNP [dm6]	T	G	4.857e^-5	0.112	DOWNSTREAM Cpr11B INTRON CG43921
3L	4530304	3L_4530304_SNP [dm3] 3L_4530304_SNP [dm6]	T	C	4.861e^-5	0.112	INTRON Tie	TF binding site mE1_TFBS_inv
3L	2713337	3L_2713337_SNP [dm3] 3L_2713337_SNP [dm6]	G	A	4.866e^-5	0.112	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	16172145	3R_16172145_SNP [dm3] 3R_20346423_SNP [dm6]	A	G	4.867e^-5	0.112	INTERGENIC
3R	24107257	3R_24107257_SNP [dm3] 3R_28281535_SNP [dm6]	T	G	4.880e^-5	0.112	INTERGENIC
3R	22113177	3R_22113177_SNP [dm3] 3R_26287455_SNP [dm6]	T	A	4.926e^-5	0.113	INTERGENIC
3R	19293560	3R_19293560_SNP [dm3] 3R_23467838_SNP [dm6]	C	A	5.021e^-5	0.115	INTRON CG4374
2L	3577446	2L_3577446_SNP [dm3] 2L_3577446_SNP [dm6]	G	T	5.038e^-5	0.116	DOWNSTREAM CG43815 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17216525	3R_17216525_SNP [dm3] 3R_21390803_SNP [dm6]	A	G	5.047e^-5	0.116	DOWNSTREAM bap INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	2595660	3L_2595660_SNP [dm3] 3L_2595660_SNP [dm6]	T	C	5.068e^-5	0.116	UPSTREAM CG16984 DOWNSTREAM CG12182 & 1 other INTERGENIC
3L	2595661	3L_2595661_SNP [dm3] 3L_2595661_SNP [dm6]	T	A	5.068e^-5	0.116	UPSTREAM CG16984 DOWNSTREAM CG12182 & 1 other INTERGENIC
3R	23304018	3R_23304018_SNP [dm3] 3R_27478296_SNP [dm6]	G	A	5.070e^-5	0.116	UPSTREAM Cyp6a18 INTERGENIC
2R	8551761	2R_8551761_SNP [dm3] 2R_12664256_SNP [dm6]	C	A	5.103e^-5	0.116	INTRON nemy
3L	15663598	3L_15663598_SNP [dm3] 3L_15670498_SNP [dm6]	A	G	5.108e^-5	0.116	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	6555614	X_6555614_SNP [dm3] X_6661581_SNP [dm6]	G	T	5.125e^-5	0.117	UPSTREAM Ctr1A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
2R	19237572	2R_19237572_SNP [dm3] 2R_23350049_SNP [dm6]	T	G	5.152e^-5	0.117	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16737970	3R_16737970_SNP [dm3] 3R_20912248_SNP [dm6]	G	C	5.160e^-5	0.117	SYNONYMOUS_CODING CG31191 DOWNSTREAM snoRNA:CG31191-a EXON CR44106
3R	9707859	3R_9707859_SNP [dm3] 3R_13882137_SNP [dm6]	T	A	5.166e^-5	0.117	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14631591	2L_14631591_SNP [dm3] 2L_14631591_SNP [dm6]	T	C	5.172e^-5	0.117	INTRON osp
3R	17286912	3R_17286912_SNP [dm3] 3R_21461190_SNP [dm6]	G	T	5.173e^-5	0.117	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	2291795	X_2291795_SNP [dm3] X_2397762_SNP [dm6]	A	G	5.181e^-5	0.117	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	3477419	2L_3477419_SNP [dm3] 2L_3477419_SNP [dm6]	C	A	5.213e^-5	0.117	EXON CR43928	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11435978	3L_11435978_SNP [dm3] 3L_11442878_SNP [dm6]	A	G	5.216e^-5	0.117	INTERGENIC
3R	18862122	3R_18862122_DEL [dm3] 3R_23036400_DEL [dm6]	ATATA	A	5.222e^-5	0.117	UPSTREAM CG13833 INTERGENIC
3R	12875553	3R_12875553_SNP [dm3] 3R_17049831_SNP [dm6]	A	G	5.242e^-5	0.118	INTERGENIC
3R	16864518	3R_16864518_SNP [dm3] 3R_21038796_SNP [dm6]	C	T	5.262e^-5	0.118	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad
3L	10277235	3L_10277235_SNP [dm3] 3L_10284135_SNP [dm6]	A	C	5.263e^-5	0.118	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	3428419	X_3428419_SNP [dm3] X_3534386_SNP [dm6]	T	C	5.266e^-5	0.118	INTRON CG32791	TF binding site mE1_TFBS_inv
2R	8800125	2R_8800125_SNP [dm3] 2R_12912620_SNP [dm6]	C	G	5.268e^-5	0.118	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	8472668	X_8472668_SNP [dm3] X_8578635_SNP [dm6]	T	C	5.283e^-5	0.118	INTRON CG12065
3L	1394538	3L_1394538_SNP [dm3] 3L_1394538_SNP [dm6]	C	A	5.286e^-5	0.118	INTRON Ptp61F
3L	17938460	3L_17938460_SNP [dm3] 3L_17945360_SNP [dm6]	T	A	5.315e^-5	0.118	UTR_5_PRIME CG43174
3L	4420445	3L_4420445_SNP [dm3] 3L_4420445_SNP [dm6]	C	T	5.321e^-5	0.118	UTR_3_PRIME DOR DOWNSTREAM DOR
3R	19770605	3R_19770605_SNP [dm3] 3R_23944883_SNP [dm6]	C	T	5.335e^-5	0.118	INTRON CG12268	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6790523	3R_6790523_SNP [dm3] 3R_10964801_SNP [dm6]	G	C	5.335e^-5	0.118	INTERGENIC	transposable element FlyBase
3R	9942991	3R_9942991_SNP [dm3] 3R_14117269_SNP [dm6]	T	G	5.336e^-5	0.118	INTRON Kif19A
2R	5853954	2R_5853954_SNP [dm3] 2R_9966449_SNP [dm6]	G	A	5.340e^-5	0.118	UPSTREAM CG12133 INTERGENIC
3R	16737985	3R_16737985_SNP [dm3] 3R_20912263_SNP [dm6]	A	G	5.342e^-5	0.118	SYNONYMOUS_CODING CG31191 DOWNSTREAM snoRNA:CG31191-a EXON CR44106
2R	17452546	2R_17452546_SNP [dm3] 2R_21565041_SNP [dm6]	T	C	5.344e^-5	0.118	INTRON CG10440
2R	17452557	2R_17452557_SNP [dm3] 2R_21565052_SNP [dm6]	A	C	5.344e^-5	0.118	INTRON CG10440
3L	3558961	3L_3558961_SNP [dm3] 3L_3558961_SNP [dm6]	G	C	5.350e^-5	0.118	INTRON Eip63E
3R	12950198	3R_12950198_SNP [dm3] 3R_17124476_SNP [dm6]	A	G	5.354e^-5	0.118	UPSTREAM CG45079 INTRON cher
3L	738577	3L_738577_SNP [dm3] 3L_738577_SNP [dm6]	A	G	5.370e^-5	0.118	NON_SYNONYMOUS_CODING hng3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	17093580	3R_17093580_SNP [dm3] 3R_21267858_SNP [dm6]	A	G	5.400e^-5	0.118	INTRON Rab1	TF binding site BDTNP1_TFBS_dl
3L	8712373	3L_8712373_SNP [dm3] 3L_8719273_SNP [dm6]	C	T	5.408e^-5	0.118	SYNONYMOUS_CODING SrpRbeta	TF binding site BDTNP1_TFBS_dl
3L	8712403	3L_8712403_SNP [dm3] 3L_8719303_SNP [dm6]	A	T	5.408e^-5	0.118	SYNONYMOUS_CODING SrpRbeta DOWNSTREAM CG32022	TF binding site BDTNP1_TFBS_dl
3R	23627698	3R_23627698_SNP [dm3] 3R_27801976_SNP [dm6]	G	C	5.412e^-5	0.118	INTRON CG34353
3R	8863667	3R_8863667_SNP [dm3] 3R_13037945_SNP [dm6]	T	G	5.417e^-5	0.118	UTR_3_PRIME ry UPSTREAM CG11668
3R	14338345	3R_14338345_SNP [dm3] 3R_18512623_SNP [dm6]	A	T	5.453e^-5	0.119	INTRON fru
3R	16343129	3R_16343129_SNP [dm3] 3R_20517407_SNP [dm6]	G	C	5.453e^-5	0.119	INTERGENIC
3R	16345131	3R_16345131_SNP [dm3] 3R_20519409_SNP [dm6]	C	G	5.453e^-5	0.119	INTERGENIC
3R	13825561	3R_13825561_SNP [dm3] 3R_17999839_SNP [dm6]	G	A	5.473e^-5	0.119	INTRON cpo
2L	3892276	2L_3892276_SNP [dm3] 2L_3892276_SNP [dm6]	G	T	5.474e^-5	0.119	INTRON capu
X	16945423	X_16945423_SNP [dm3] X_17051390_SNP [dm6]	C	A	5.498e^-5	0.119	INTRON CG45002
3L	18695922	3L_18695922_INS [dm3] 3L_18702822_INS [dm6]	T	TGTAAAAGCAGAAACACACT...	5.507e^-5	0.119	INTERGENIC
3R	24154286	3R_24154286_SNP [dm3] 3R_28328564_SNP [dm6]	C	T	5.507e^-5	0.119	UPSTREAM larp INTRON larp	TF binding site BDTNP1_TFBS_twi
3L	9191706	3L_9191706_SNP [dm3] 3L_9198606_SNP [dm6]	G	A	5.523e^-5	0.119	INTERGENIC
3R	20271070	3R_20271070_DEL [dm3] 3R_24445348_DEL [dm6]	CG	C	5.540e^-5	0.12	INTRON nAChRalpha1
3R	26565498	3R_26565498_SNP [dm3] 3R_30739776_SNP [dm6]	G	T	5.544e^-5	0.12	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	17318092	3R_17318092_SNP [dm3] 3R_21492370_SNP [dm6]	A	G	5.559e^-5	0.12	INTERGENIC
2L	5824420	2L_5824420_SNP [dm3] 2L_5824420_SNP [dm6]	A	G	5.567e^-5	0.12	UTR_5_PRIME TrissinR UPSTREAM TrissinR
X	20442881	X_20442881_SNP [dm3] X_20571854_SNP [dm6]	C	T	5.573e^-5	0.12	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	23299307	3R_23299307_SNP [dm3] 3R_27473585_SNP [dm6]	C	A	5.593e^-5	0.12	INTERGENIC
3L	15663585	3L_15663585_DEL [dm3] 3L_15670485_DEL [dm6]	ATAAATAAGAAA...	A	5.597e^-5	0.12	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	14283527	X_14283527_SNP [dm3] X_14389494_SNP [dm6]	C	A	5.598e^-5	0.12	INTRON dpr8
X	14283537	X_14283537_SNP [dm3] X_14389504_SNP [dm6]	C	G	5.598e^-5	0.12	INTRON dpr8
2L	5074039	2L_5074039_SNP [dm3] 2L_5074039_SNP [dm6]	A	T	5.616e^-5	0.12	INTRON pgant5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26058014	3R_26058014_SNP [dm3] 3R_30232292_SNP [dm6]	A	G	5.678e^-5	0.121	INTERGENIC
2R	17769420	2R_17769420_SNP [dm3] 2R_21881915_SNP [dm6]	G	A	5.679e^-5	0.121	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_sens
3R	17064732	3R_17064732_SNP [dm3] 3R_21239010_SNP [dm6]	G	A	5.696e^-5	0.121	INTERGENIC	regulatory region REDfly_CRMs
X	20442095	X_20442095_SNP [dm3] X_20571068_SNP [dm6]	C	A	5.697e^-5	0.121	INTERGENIC
X	17334331	X_17334331_SNP [dm3] X_17440298_SNP [dm6]	C	T	5.742e^-5	0.122	INTRON CG12994
X	5465738	X_5465738_SNP [dm3] X_5571705_SNP [dm6]	C	A	5.756e^-5	0.122	INTERGENIC
2L	7994662	2L_7994662_SNP [dm3] 2L_7994662_SNP [dm6]	T	G	5.764e^-5	0.122	UTR_3_PRIME CG7227 UPSTREAM CR44996 & 1 other DOWNSTREAM CG7227	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
2R	8803110	2R_8803110_SNP [dm3] 2R_12915605_SNP [dm6]	T	C	5.766e^-5	0.122	UPSTREAM NAT1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
3R	4414343	3R_4414343_SNP [dm3] 3R_8588621_SNP [dm6]	C	G	5.776e^-5	0.122	INTRON 5-HT2B	TF binding site mE1_TFBS_sbb
3R	26008351	3R_26008351_SNP [dm3] 3R_30182629_SNP [dm6]	C	A	5.781e^-5	0.122	INTERGENIC
3R	23622412	3R_23622412_SNP [dm3] 3R_27796690_SNP [dm6]	G	T	5.792e^-5	0.122	INTRON CG34353
3R	23622808	3R_23622808_SNP [dm3] 3R_27797086_SNP [dm6]	T	A	5.792e^-5	0.122	INTRON CG34353
2R	16918170	2R_16918170_SNP [dm3] 2R_21030665_SNP [dm6]	G	T	5.800e^-5	0.122	UPSTREAM CR45148 INTERGENIC
3R	21228155	3R_21228155_SNP [dm3] 3R_25402433_SNP [dm6]	G	T	5.805e^-5	0.122	INTRON Fur1
2R	6104850	2R_6104850_SNP [dm3] 2R_10217345_SNP [dm6]	T	G	5.818e^-5	0.122	INTRON Hr46 & 1 other
3R	24105119	3R_24105119_SNP [dm3] 3R_28279397_SNP [dm6]	T	A	5.840e^-5	0.123	INTERGENIC
2R	5853801	2R_5853801_SNP [dm3] 2R_9966296_SNP [dm6]	T	A	5.869e^-5	0.123	UPSTREAM CG12133 INTERGENIC
2R	5853802	2R_5853802_DEL [dm3] 2R_9966297_DEL [dm6]	TTTTGTT	T	5.869e^-5	0.123	UPSTREAM CG12133 INTERGENIC
3R	18862224	3R_18862224_SNP [dm3] 3R_23036502_SNP [dm6]	G	A	5.893e^-5	0.123	UPSTREAM CG13833 INTERGENIC
2L	7994487	2L_7994487_SNP [dm3] 2L_7994487_SNP [dm6]	T	C	5.912e^-5	0.124	UTR_3_PRIME CG7227 UPSTREAM pes & 1 other DOWNSTREAM CG7227	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	3909195	3L_3909195_SNP [dm3] 3L_3909195_SNP [dm6]	C	G	5.929e^-5	0.124	DOWNSTREAM Eip63F-1 INTRON mge	TF binding site mE1_TFBS_HSA
2R	14688314	2R_14688314_SNP [dm3] 2R_18800809_SNP [dm6]	G	T	5.934e^-5	0.124	INTRON l_2_08717	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	18992933	3R_18992933_INS [dm3] 3R_23167211_INS [dm6]	G	GGT	5.959e^-5	0.124	INTERGENIC
3R	21653898	3R_21653898_SNP [dm3] 3R_25828176_SNP [dm6]	C	A	5.969e^-5	0.124	INTERGENIC
X	2755136	X_2755136_SNP [dm3] X_2861103_SNP [dm6]	A	T	5.983e^-5	0.124	INTRON kirre
3R	25780669	3R_25780669_SNP [dm3] 3R_29954947_SNP [dm6]	T	C	5.992e^-5	0.124	INTRON TkR99D
3R	25780674	3R_25780674_SNP [dm3] 3R_29954952_SNP [dm6]	G	A	5.992e^-5	0.124	INTRON TkR99D
3R	24107296	3R_24107296_SNP [dm3] 3R_28281574_SNP [dm6]	C	T	5.993e^-5	0.124	INTERGENIC
2R	17858418	2R_17858418_SNP [dm3] 2R_21970913_SNP [dm6]	C	G	6.003e^-5	0.124	NON_SYNONYMOUS_CODING CG34029 DOWNSTREAM ppk9
2R	19074356	2R_19074356_SNP [dm3] 2R_23186833_SNP [dm6]	C	A	6.011e^-5	0.124	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	15678017	X_15678017_INS [dm3] X_15783984_INS [dm6]	A	ACAA	6.043e^-5	0.125	UPSTREAM Efhc1.1 DOWNSTREAM Paf-AHalpha INTERGENIC
3R	19130983	3R_19130983_SNP [dm3] 3R_23305261_SNP [dm6]	T	G	6.054e^-5	0.125	INTRON pnt
3L	5916665	3L_5916665_SNP [dm3] 3L_5923565_SNP [dm6]	C	A	6.058e^-5	0.125	UTR_3_PRIME CG32407 UPSTREAM Vap-33B	TF binding site mE1_TFBS_cad
3R	17262787	3R_17262787_SNP [dm3] 3R_21437065_SNP [dm6]	A	C	6.060e^-5	0.125	UPSTREAM CR44089 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	17262809	3R_17262809_SNP [dm3] 3R_21437087_SNP [dm6]	A	G	6.060e^-5	0.125	UPSTREAM CR44089 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	12329486	X_12329486_SNP [dm3] X_12435453_SNP [dm6]	T	G	6.068e^-5	0.125	INTRON Pkcdelta
3L	10294001	3L_10294001_SNP [dm3] 3L_10300901_SNP [dm6]	C	T	6.100e^-5	0.125	INTERGENIC
3L	10294006	3L_10294006_SNP [dm3] 3L_10300906_SNP [dm6]	A	T	6.100e^-5	0.125	INTERGENIC
3L	10294010	3L_10294010_DEL [dm3] 3L_10300910_DEL [dm6]	TA	T	6.100e^-5	0.125	INTERGENIC
3L	10294028	3L_10294028_INS [dm3] 3L_10300928_INS [dm6]	A	AT	6.100e^-5	0.125	INTERGENIC
3L	10294030	3L_10294030_SNP [dm3] 3L_10300930_SNP [dm6]	A	G	6.100e^-5	0.125	INTERGENIC
2L	10847162	2L_10847162_SNP [dm3] 2L_10847162_SNP [dm6]	A	G	6.108e^-5	0.125	UPSTREAM Porin2 DOWNSTREAM porin INTERGENIC
3L	9523849	3L_9523849_SNP [dm3] 3L_9530749_SNP [dm6]	T	A	6.127e^-5	0.125	INTRON Or67a
3R	9960996	3R_9960996_SNP [dm3] 3R_14135274_SNP [dm6]	A	C	6.140e^-5	0.125	INTERGENIC
3R	9961017	3R_9961017_SNP [dm3] 3R_14135295_SNP [dm6]	T	G	6.140e^-5	0.125	INTERGENIC
3R	17708838	3R_17708838_SNP [dm3] 3R_21883116_SNP [dm6]	G	T	6.164e^-5	0.125	SYNONYMOUS_CODING CG31465 UTR_3_PRIME CG31465 DOWNSTREAM fit EXON CR45046
3R	13441780	3R_13441780_SNP [dm3] 3R_17616058_SNP [dm6]	G	A	6.182e^-5	0.125	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	18129123	2R_18129123_SNP [dm3] 2R_22241618_SNP [dm6]	T	A	6.192e^-5	0.125	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	27321614	3R_27321614_SNP [dm3] 3R_31495892_SNP [dm6]	A	C	6.210e^-5	0.126	INTERGENIC
2R	13104346	2R_13104346_DEL [dm3] 2R_17216841_DEL [dm6]	CCTGTTCGC	C	6.242e^-5	0.126	UTR_5_PRIME mbl
X	7377924	X_7377924_DEL [dm3] X_7483891_DEL [dm6]	AG	A	6.265e^-5	0.127	INTERGENIC
3R	18974318	3R_18974318_SNP [dm3] 3R_23148596_SNP [dm6]	A	G	6.282e^-5	0.127	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	26045726	3R_26045726_SNP [dm3] 3R_30220004_SNP [dm6]	C	T	6.282e^-5	0.127	INTERGENIC
2R	11961356	2R_11961356_SNP [dm3] 2R_16073851_SNP [dm6]	T	C	6.291e^-5	0.127	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27121534	3R_27121534_SNP [dm3] 3R_31295812_SNP [dm6]	C	T	6.296e^-5	0.127	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	27121545	3R_27121545_SNP [dm3] 3R_31295823_SNP [dm6]	T	C	6.296e^-5	0.127	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16347395	3R_16347395_SNP [dm3] 3R_20521673_SNP [dm6]	C	T	6.304e^-5	0.127	INTERGENIC
2L	14631590	2L_14631590_SNP [dm3] 2L_14631590_SNP [dm6]	G	T	6.340e^-5	0.127	INTRON osp
3L	6838645	3L_6838645_SNP [dm3] 3L_6845545_SNP [dm6]	C	G	6.357e^-5	0.127	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	10523020	3L_10523020_DEL [dm3] 3L_10529920_DEL [dm6]	TACT	T	6.371e^-5	0.127	INTRON A2bp1
X	3351292	X_3351292_SNP [dm3] X_3457259_SNP [dm6]	T	C	6.375e^-5	0.127	INTRON CR44999
X	3351322	X_3351322_SNP [dm3] X_3457289_SNP [dm6]	T	A	6.375e^-5	0.127	INTRON CR44999
X	3351323	X_3351323_SNP [dm3] X_3457290_SNP [dm6]	G	T	6.375e^-5	0.127	INTRON CR44999
3L	10523562	3L_10523562_SNP [dm3] 3L_10530462_SNP [dm6]	C	T	6.401e^-5	0.127	INTRON A2bp1
2L	8340657	2L_8340657_SNP [dm3] 2L_8340657_SNP [dm6]	T	A	6.417e^-5	0.128	INTRON CG14274
3L	4155017	3L_4155017_SNP [dm3] 3L_4155017_SNP [dm6]	T	G	6.446e^-5	0.128	INTRON nab	TF binding site mE1_TFBS_cad
3L	7203779	3L_7203779_SNP [dm3] 3L_7210679_SNP [dm6]	T	C	6.480e^-5	0.129	INTERGENIC	TF binding site mE1_TFBS_inv
3L	6911519	3L_6911519_SNP [dm3] 3L_6918419_SNP [dm6]	T	C	6.510e^-5	0.129	INTERGENIC
3L	1394291	3L_1394291_INS [dm3] 3L_1394291_INS [dm6]	T	TGGCATT	6.522e^-5	0.129	INTRON Ptp61F
3R	17881161	3R_17881161_SNP [dm3] 3R_22055439_SNP [dm6]	C	G	6.533e^-5	0.129	INTRON how
3R	24779844	3R_24779844_SNP [dm3] 3R_28954122_SNP [dm6]	C	T	6.582e^-5	0.13	INTRON CG14521
3R	18859927	3R_18859927_SNP [dm3] 3R_23034205_SNP [dm6]	T	G	6.593e^-5	0.13	INTRON CG13833
3L	18276780	3L_18276780_SNP [dm3] 3L_18283680_SNP [dm6]	C	T	6.635e^-5	0.131	INTERGENIC
3R	22198473	3R_22198473_SNP [dm3] 3R_26372751_SNP [dm6]	G	T	6.652e^-5	0.131	INTERGENIC
2L	8240245	2L_8240245_SNP [dm3] 2L_8240245_SNP [dm6]	T	A	6.654e^-5	0.131	UPSTREAM Pvr DOWNSTREAM Spn28F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	12999825	X_12999825_SNP [dm3] X_13105792_SNP [dm6]	T	A	6.659e^-5	0.131	INTRON CG43313
2L	3477398	2L_3477398_SNP [dm3] 2L_3477398_SNP [dm6]	G	A	6.682e^-5	0.131	EXON CR43928	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3477417	2L_3477417_SNP [dm3] 2L_3477417_SNP [dm6]	C	T	6.682e^-5	0.131	EXON CR43928	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18482294	3R_18482294_SNP [dm3] 3R_22656572_SNP [dm6]	C	T	6.684e^-5	0.131	INTRON CG45058
3R	10863926	3R_10863926_SNP [dm3] 3R_15038204_SNP [dm6]	T	C	6.691e^-5	0.131	UPSTREAM CR44944 DOWNSTREAM RpL10Aa INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	21904716	3R_21904716_SNP [dm3] 3R_26078994_SNP [dm6]	G	T	6.698e^-5	0.131	INTRON dys
3R	16338455	3R_16338455_SNP [dm3] 3R_20512733_SNP [dm6]	G	A	6.700e^-5	0.131	UPSTREAM CG4288 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	18274717	3R_18274717_SNP [dm3] 3R_22448995_SNP [dm6]	G	C	6.707e^-5	0.131	INTRON CG34376	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16716000	3R_16716000_SNP [dm3] 3R_20890278_SNP [dm6]	A	G	6.721e^-5	0.131	UPSTREAM tRNA:CR31480 & 1 other INTERGENIC
3R	15187710	3R_15187710_SNP [dm3] 3R_19361988_SNP [dm6]	T	C	6.748e^-5	0.131	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14200422	2R_14200422_SNP [dm3] 2R_18312917_SNP [dm6]	C	G	6.789e^-5	0.132	DOWNSTREAM Tango8 INTRON sbb
3L	6246393	3L_6246393_SNP [dm3] 3L_6253293_SNP [dm6]	C	T	6.815e^-5	0.132	INTRON Best2	TF binding site BDTNP1_TFBS_dl
3R	9722392	3R_9722392_SNP [dm3] 3R_13896670_SNP [dm6]	G	A	6.816e^-5	0.132	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18245863	3L_18245863_SNP [dm3] 3L_18252763_SNP [dm6]	T	C	6.817e^-5	0.132	UTR_3_PRIME CheA75a
2L	1484407	2L_1484407_SNP [dm3] 2L_1484407_SNP [dm6]	C	G	6.817e^-5	0.132	INTERGENIC
3L	11180641	3L_11180641_SNP [dm3] 3L_11187541_SNP [dm6]	A	T	6.817e^-5	0.132	INTRON GlcAT-P
3R	26040101	3R_26040101_SNP [dm3] 3R_30214379_SNP [dm6]	T	C	6.828e^-5	0.132	UPSTREAM CecB INTERGENIC
X	7900918	X_7900918_SNP [dm3] X_8006885_SNP [dm6]	T	C	6.843e^-5	0.132	INTRON Tbh	TF binding site mE1_TFBS_inv
3L	7087094	3L_7087094_SNP [dm3] 3L_7093994_SNP [dm6]	T	A	6.861e^-5	0.132	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14291260	2L_14291260_SNP [dm3] 2L_14291260_SNP [dm6]	C	G	6.880e^-5	0.133	INTRON wb & 1 other EXON CR43639
2R	12516230	2R_12516230_SNP [dm3] 2R_16628725_SNP [dm6]	A	C	6.882e^-5	0.133	UTR_3_PRIME Alk
2L	16712429	2L_16712429_SNP [dm3] 2L_16712429_SNP [dm6]	T	G	6.902e^-5	0.133	INTRON CG31808
2R	18884108	2R_18884108_SNP [dm3] 2R_22996585_SNP [dm6]	A	C	6.929e^-5	0.133	INTRON twi & 1 other
2R	8546812	2R_8546812_SNP [dm3] 2R_12659307_SNP [dm6]	A	G	6.932e^-5	0.133	SYNONYMOUS_CODING CG8646 DOWNSTREAM nemy	TF binding site mE1_TFBS_cad
2R	5843623	2R_5843623_DEL [dm3] 2R_9956118_DEL [dm6]	AGCATTCTTAAAGGCGGATT...	A	6.941e^-5	0.133	INTRON Mef2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13445455	3R_13445455_SNP [dm3] 3R_17619733_SNP [dm6]	T	C	6.941e^-5	0.133	UPSTREAM tRNA:CR31570 & 2 others DOWNSTREAM tRNA:A:90C & 1 other INTERGENIC
2L	15563044	2L_15563044_SNP [dm3] 2L_15563044_SNP [dm6]	G	C	6.952e^-5	0.133	INTRON kek3
3L	10294032	3L_10294032_INS [dm3] 3L_10300932_INS [dm6]	A	AG	6.974e^-5	0.133	INTERGENIC
2L	3794027	2L_3794027_SNP [dm3] 2L_3794027_SNP [dm6]	C	G	6.979e^-5	0.133	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_sens
3R	17881060	3R_17881060_SNP [dm3] 3R_22055338_SNP [dm6]	G	A	6.980e^-5	0.133	INTRON how
3L	13171608	3L_13171608_SNP [dm3] 3L_13178508_SNP [dm6]	G	A	7.036e^-5	0.134	INTERGENIC
3L	13171639	3L_13171639_SNP [dm3] 3L_13178539_SNP [dm6]	A	T	7.036e^-5	0.134	INTERGENIC
3L	13171640	3L_13171640_SNP [dm3] 3L_13178540_SNP [dm6]	C	T	7.036e^-5	0.134	INTERGENIC
3L	18219231	3L_18219231_SNP [dm3] 3L_18226131_SNP [dm6]	A	G	7.039e^-5	0.134	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	18213961	3L_18213961_SNP [dm3] 3L_18220861_SNP [dm6]	A	C	7.064e^-5	0.134	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
3L	9412062	3L_9412062_SNP [dm3] 3L_9418962_SNP [dm6]	G	A	7.090e^-5	0.134	SYNONYMOUS_CODING CG3967	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
X	12596706	X_12596706_DEL [dm3] X_12702673_DEL [dm6]	AATCCTTAAAACAAATAG...	T	7.094e^-5	0.134	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14629526	3L_14629526_SNP [dm3] 3L_14636426_SNP [dm6]	A	T	7.119e^-5	0.134	INTRON dlp	TF binding site BDTNP1_TFBS_dl
3L	540056	3L_540056_SNP [dm3] 3L_540056_SNP [dm6]	T	A	7.121e^-5	0.134	UTR_5_PRIME klar UPSTREAM CG17180	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	4101139	3R_4101139_SNP [dm3] 3R_8275417_SNP [dm6]	G	C	7.127e^-5	0.134	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12420995	2R_12420995_SNP [dm3] 2R_16533490_SNP [dm6]	A	T	7.129e^-5	0.134	DOWNSTREAM Sema-2a INTERGENIC
2R	20222370	2R_20222370_SNP [dm3] 2R_24334847_SNP [dm6]	G	T	7.133e^-5	0.134	UPSTREAM slbo EXON CR44282	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	19052550	3R_19052550_SNP [dm3] 3R_23226828_SNP [dm6]	A	G	7.140e^-5	0.134	UPSTREAM cnc DOWNSTREAM CG4467 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3315448	2L_3315448_SNP [dm3] 2L_3315448_SNP [dm6]	C	T	7.145e^-5	0.134	INTRON CG3277
3L	14097948	3L_14097948_SNP [dm3] 3L_14104848_SNP [dm6]	T	C	7.173e^-5	0.135	SYNONYMOUS_CODING Sox21a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9438604	3L_9438604_SNP [dm3] 3L_9445504_SNP [dm6]	T	A	7.184e^-5	0.135	INTRON CG33926	transposable element FlyBase
3R	16346784	3R_16346784_INS [dm3] 3R_20521062_INS [dm6]	G	GG	7.195e^-5	0.135	INTERGENIC
3R	16346831	3R_16346831_SNP [dm3] 3R_20521109_SNP [dm6]	A	G	7.195e^-5	0.135	INTERGENIC
3R	16346909	3R_16346909_SNP [dm3] 3R_20521187_SNP [dm6]	T	A	7.195e^-5	0.135	INTERGENIC
3L	16175058	3L_16175058_SNP [dm3] 3L_16181958_SNP [dm6]	G	T	7.216e^-5	0.135	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16346175	3R_16346175_SNP [dm3] 3R_20520453_SNP [dm6]	C	G	7.232e^-5	0.135	INTERGENIC
3R	11304086	3R_11304086_SNP [dm3] 3R_15478364_SNP [dm6]	G	T	7.263e^-5	0.135	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2707657	3L_2707657_SNP [dm3] 3L_2707657_SNP [dm6]	G	A	7.272e^-5	0.135	INTRON Fife
3L	2707884	3L_2707884_SNP [dm3] 3L_2707884_SNP [dm6]	T	A	7.272e^-5	0.135	INTRON Fife
3L	2709533	3L_2709533_SNP [dm3] 3L_2709533_SNP [dm6]	T	C	7.272e^-5	0.135	INTRON Fife

By genomic position
Variant impact
Gene name

Microbiota_OTU011 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results